Query 011959
Match_columns 474
No_of_seqs 438 out of 2590
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 18:48:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011959.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011959hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ao9_A Beta-phenylalanine amin 100.0 3.8E-81 1.3E-85 629.9 42.9 406 48-473 39-445 (454)
2 4atq_A 4-aminobutyrate transam 100.0 4.2E-74 1.4E-78 581.4 48.3 401 47-473 21-454 (456)
3 4e3q_A Pyruvate transaminase; 100.0 7.8E-72 2.7E-76 566.8 38.5 413 54-473 25-467 (473)
4 3k28_A Glutamate-1-semialdehyd 100.0 3E-68 1E-72 540.9 42.5 425 49-474 3-427 (429)
5 3l44_A Glutamate-1-semialdehyd 100.0 5.4E-68 1.9E-72 539.9 44.1 426 48-473 3-429 (434)
6 4e77_A Glutamate-1-semialdehyd 100.0 2.2E-67 7.6E-72 534.5 47.1 425 50-474 4-429 (429)
7 3fq8_A Glutamate-1-semialdehyd 100.0 1E-66 3.4E-71 529.4 44.4 426 49-474 2-427 (427)
8 2yky_A Beta-transaminase; tran 100.0 1.3E-70 4.4E-75 557.3 0.0 404 50-473 54-459 (465)
9 2e7u_A Glutamate-1-semialdehyd 100.0 1.4E-63 4.9E-68 505.8 40.8 422 49-471 2-424 (424)
10 3oks_A 4-aminobutyrate transam 100.0 4.1E-62 1.4E-66 498.5 47.6 402 47-473 18-450 (451)
11 2epj_A Glutamate-1-semialdehyd 100.0 1E-62 3.5E-67 501.0 41.5 422 50-473 9-430 (434)
12 4ffc_A 4-aminobutyrate aminotr 100.0 6.3E-62 2.2E-66 497.2 47.3 400 47-473 21-448 (453)
13 3hmu_A Aminotransferase, class 100.0 1.6E-61 5.4E-66 496.0 39.5 407 53-473 12-451 (472)
14 3i5t_A Aminotransferase; pyrid 100.0 4.6E-61 1.6E-65 493.3 42.4 407 54-473 12-453 (476)
15 3n5m_A Adenosylmethionine-8-am 100.0 6.8E-60 2.3E-64 482.7 43.8 413 51-474 7-452 (452)
16 3tfu_A Adenosylmethionine-8-am 100.0 1.2E-59 4.2E-64 480.3 39.7 395 53-474 30-453 (457)
17 3gju_A Putative aminotransfera 100.0 2.5E-59 8.5E-64 479.4 41.3 409 56-473 9-455 (460)
18 2cy8_A D-phgat, D-phenylglycin 100.0 9.3E-60 3.2E-64 481.8 38.0 415 50-473 11-434 (453)
19 3dod_A Adenosylmethionine-8-am 100.0 2.2E-59 7.4E-64 478.3 36.4 403 55-473 4-442 (448)
20 4a6r_A Omega transaminase; tra 100.0 1E-58 3.4E-63 474.8 40.0 384 81-473 32-448 (459)
21 4a0g_A Adenosylmethionine-8-am 100.0 6.3E-60 2.2E-64 509.2 31.6 411 55-474 333-828 (831)
22 1z7d_A Ornithine aminotransfer 100.0 9E-57 3.1E-61 456.6 42.1 389 50-473 26-428 (433)
23 2oat_A Ornithine aminotransfer 100.0 1.9E-56 6.5E-61 454.9 42.0 388 50-474 37-439 (439)
24 3dxv_A Alpha-amino-epsilon-cap 100.0 1.5E-56 5.1E-61 456.3 39.8 395 53-473 6-424 (439)
25 1zod_A DGD, 2,2-dialkylglycine 100.0 3.5E-55 1.2E-59 445.3 39.2 408 51-473 4-431 (433)
26 1ohv_A 4-aminobutyrate aminotr 100.0 1.2E-55 4.2E-60 452.6 35.1 394 49-474 23-471 (472)
27 3nx3_A Acoat, acetylornithine 100.0 5.8E-55 2E-59 438.3 39.3 368 80-474 17-395 (395)
28 3i4j_A Aminotransferase, class 100.0 1.5E-54 5E-59 440.4 38.4 382 80-473 10-427 (430)
29 2pb2_A Acetylornithine/succiny 100.0 6.1E-54 2.1E-58 434.3 38.6 367 81-473 39-417 (420)
30 2cjg_A L-lysine-epsilon aminot 100.0 4.7E-54 1.6E-58 438.7 34.8 364 85-473 39-447 (449)
31 3a8u_X Omega-amino acid--pyruv 100.0 1.3E-51 4.5E-56 421.0 38.6 378 81-474 32-447 (449)
32 2eo5_A 419AA long hypothetical 100.0 1.5E-50 5E-55 409.5 42.5 379 53-474 3-418 (419)
33 1sff_A 4-aminobutyrate aminotr 100.0 6.7E-50 2.3E-54 405.4 43.3 398 52-473 3-423 (426)
34 1s0a_A Adenosylmethionine-8-am 100.0 8.2E-50 2.8E-54 405.3 42.6 371 82-473 25-423 (429)
35 3ruy_A Ornithine aminotransfer 100.0 3.6E-50 1.2E-54 403.0 39.4 361 81-472 18-392 (392)
36 4adb_A Succinylornithine trans 100.0 5E-50 1.7E-54 403.6 40.5 368 81-473 21-399 (406)
37 2ord_A Acoat, acetylornithine 100.0 3.6E-47 1.2E-51 381.9 40.1 365 81-474 22-397 (397)
38 1vef_A Acetylornithine/acetyl- 100.0 4.9E-46 1.7E-50 373.3 36.8 361 81-472 27-395 (395)
39 2eh6_A Acoat, acetylornithine 100.0 1.5E-43 5.1E-48 352.6 39.5 355 81-471 10-375 (375)
40 2w8t_A SPT, serine palmitoyltr 100.0 3.6E-40 1.2E-44 334.2 35.3 365 49-473 23-414 (427)
41 3l8a_A METC, putative aminotra 100.0 5.8E-40 2E-44 332.1 23.8 356 79-473 39-421 (421)
42 3tqx_A 2-amino-3-ketobutyrate 100.0 8.3E-37 2.8E-41 306.2 32.6 342 82-474 27-396 (399)
43 1fc4_A 2-amino-3-ketobutyrate 100.0 1.2E-35 4E-40 298.4 32.6 343 81-474 27-397 (401)
44 3dzz_A Putative pyridoxal 5'-p 100.0 1.2E-35 4.2E-40 296.9 27.6 356 83-474 11-389 (391)
45 3fdb_A Beta C-S lyase, putativ 100.0 6.7E-36 2.3E-40 297.4 24.2 343 84-474 8-376 (377)
46 3a2b_A Serine palmitoyltransfe 100.0 6.6E-34 2.2E-38 285.4 34.3 340 81-474 26-392 (398)
47 3kax_A Aminotransferase, class 100.0 5.8E-35 2E-39 291.2 25.9 353 82-472 6-383 (383)
48 3kki_A CAI-1 autoinducer synth 100.0 2.2E-35 7.6E-40 297.2 22.5 333 86-473 46-403 (409)
49 1bs0_A Protein (8-amino-7-oxon 100.0 4.1E-34 1.4E-38 285.3 31.1 337 81-470 22-383 (384)
50 1d2f_A MALY protein; aminotran 100.0 4.1E-33 1.4E-37 278.8 33.0 352 83-473 7-388 (390)
51 4dq6_A Putative pyridoxal phos 100.0 3.8E-34 1.3E-38 286.0 23.1 352 82-472 10-391 (391)
52 1yiz_A Kynurenine aminotransfe 100.0 1.8E-32 6.2E-37 277.6 30.7 354 100-473 38-428 (429)
53 1c7n_A Cystalysin; transferase 100.0 1.6E-33 5.3E-38 282.6 21.4 353 83-473 8-392 (399)
54 3ftb_A Histidinol-phosphate am 100.0 2.4E-32 8.1E-37 270.1 29.5 339 82-474 8-361 (361)
55 3jtx_A Aminotransferase; NP_28 100.0 4.8E-33 1.6E-37 278.7 21.4 347 82-471 13-395 (396)
56 3nra_A Aspartate aminotransfer 100.0 5.5E-33 1.9E-37 279.2 21.2 356 83-473 20-404 (407)
57 3ly1_A Putative histidinol-pho 100.0 7.1E-32 2.4E-36 266.1 26.6 334 88-473 5-351 (354)
58 3b46_A Aminotransferase BNA3; 100.0 7.1E-32 2.4E-36 274.8 27.0 352 97-470 55-443 (447)
59 2zc0_A Alanine glyoxylate tran 100.0 1.4E-31 4.8E-36 269.1 28.7 333 98-473 33-403 (407)
60 3h14_A Aminotransferase, class 100.0 5.3E-32 1.8E-36 270.8 24.5 327 96-473 28-381 (391)
61 3euc_A Histidinol-phosphate am 100.0 1.5E-31 5.1E-36 265.2 27.2 326 98-472 29-366 (367)
62 2dou_A Probable N-succinyldiam 100.0 4.6E-32 1.6E-36 269.8 23.5 332 96-471 22-375 (376)
63 2z61_A Probable aspartate amin 100.0 4.5E-32 1.5E-36 269.3 23.3 321 97-473 27-370 (370)
64 3ezs_A Aminotransferase ASPB; 100.0 5.8E-32 2E-36 268.9 23.9 328 96-473 21-374 (376)
65 3b1d_A Betac-S lyase; HET: PLP 100.0 3E-35 1E-39 294.6 0.0 354 82-473 12-392 (392)
66 2x5d_A Probable aminotransfera 100.0 1.2E-31 4E-36 270.3 23.2 338 96-473 34-397 (412)
67 3aow_A Putative uncharacterize 100.0 3.9E-31 1.3E-35 269.2 27.3 334 98-473 75-444 (448)
68 3fvs_A Kynurenine--oxoglutarat 100.0 1.3E-30 4.5E-35 263.3 31.0 357 99-474 28-422 (422)
69 3ele_A Amino transferase; RER0 100.0 6.7E-31 2.3E-35 263.4 27.6 329 98-473 34-395 (398)
70 1lc5_A COBD, L-threonine-O-3-p 100.0 9.3E-32 3.2E-36 266.5 21.0 328 94-473 19-359 (364)
71 1o4s_A Aspartate aminotransfer 100.0 5E-31 1.7E-35 263.7 25.8 331 97-473 39-388 (389)
72 1j32_A Aspartate aminotransfer 100.0 5.6E-31 1.9E-35 263.0 26.1 337 97-473 28-386 (388)
73 3dyd_A Tyrosine aminotransfera 100.0 7.7E-31 2.6E-35 265.6 27.4 337 94-473 49-423 (427)
74 1gd9_A Aspartate aminotransfer 100.0 6.3E-31 2.1E-35 262.8 26.4 333 99-473 26-385 (389)
75 1v2d_A Glutamine aminotransfer 100.0 6.5E-31 2.2E-35 262.0 25.9 326 101-473 27-370 (381)
76 2zyj_A Alpha-aminodipate amino 100.0 1.1E-31 3.7E-36 269.1 20.3 332 98-473 31-392 (397)
77 1vp4_A Aminotransferase, putat 100.0 2.1E-31 7.3E-36 269.5 22.6 336 98-473 42-417 (425)
78 2o1b_A Aminotransferase, class 100.0 2.2E-31 7.6E-36 267.6 21.9 335 96-473 44-402 (404)
79 1u08_A Hypothetical aminotrans 100.0 1.4E-30 4.7E-35 260.1 26.9 329 100-469 31-385 (386)
80 2q7w_A Aspartate aminotransfer 100.0 8.9E-32 3.1E-36 269.5 17.4 335 92-471 19-396 (396)
81 3e2y_A Kynurenine-oxoglutarate 100.0 2.8E-30 9.6E-35 259.8 28.0 351 99-469 23-408 (410)
82 2o0r_A RV0858C (N-succinyldiam 100.0 2.4E-30 8.1E-35 260.6 27.3 334 101-473 27-395 (411)
83 3ffh_A Histidinol-phosphate am 100.0 3.3E-30 1.1E-34 255.1 27.5 321 98-471 31-363 (363)
84 3g0t_A Putative aminotransfera 100.0 1.7E-30 5.7E-35 263.8 25.5 346 87-473 32-436 (437)
85 3op7_A Aminotransferase class 100.0 1.3E-30 4.6E-35 259.1 22.6 308 122-473 46-370 (375)
86 3hdo_A Histidinol-phosphate am 100.0 1.9E-30 6.5E-35 256.6 22.4 321 96-472 23-353 (360)
87 2gb3_A Aspartate aminotransfer 100.0 3.8E-30 1.3E-34 259.0 24.5 330 96-473 40-401 (409)
88 3cq5_A Histidinol-phosphate am 100.0 3E-29 1E-33 249.0 30.5 319 102-472 33-366 (369)
89 3fkd_A L-threonine-O-3-phospha 100.0 1.1E-29 3.6E-34 250.2 27.1 324 86-473 2-341 (350)
90 1xi9_A Putative transaminase; 100.0 7.6E-30 2.6E-34 256.5 26.3 339 96-474 35-403 (406)
91 3piu_A 1-aminocyclopropane-1-c 100.0 6.3E-30 2.1E-34 259.5 25.8 340 94-473 31-431 (435)
92 3qgu_A LL-diaminopimelate amin 100.0 1.9E-30 6.5E-35 264.4 21.8 339 96-473 66-439 (449)
93 1ajs_A Aspartate aminotransfer 100.0 1.5E-30 5E-35 262.1 20.5 343 97-474 28-411 (412)
94 2x5f_A Aspartate_tyrosine_phen 100.0 2.9E-31 9.8E-36 269.0 14.4 339 99-473 47-428 (430)
95 2ay1_A Aroat, aromatic amino a 100.0 1.8E-30 6.1E-35 259.9 19.3 339 97-470 24-392 (394)
96 2bwn_A 5-aminolevulinate synth 100.0 9.6E-29 3.3E-33 248.0 31.5 326 97-473 44-399 (401)
97 4f4e_A Aromatic-amino-acid ami 100.0 8.8E-30 3E-34 257.2 23.8 332 99-472 49-420 (420)
98 1iay_A ACC synthase 2, 1-amino 100.0 5.2E-29 1.8E-33 252.2 27.8 338 100-473 37-426 (428)
99 3get_A Histidinol-phosphate am 100.0 2.7E-29 9.4E-34 248.6 24.2 322 99-472 30-365 (365)
100 1b5p_A Protein (aspartate amin 100.0 4.8E-29 1.6E-33 248.9 25.9 335 98-473 30-384 (385)
101 3fsl_A Aromatic-amino-acid ami 100.0 1.3E-29 4.4E-34 253.9 21.2 331 99-471 26-397 (397)
102 3ei9_A LL-diaminopimelate amin 100.0 6.6E-29 2.3E-33 251.7 23.6 339 96-471 53-425 (432)
103 1bw0_A TAT, protein (tyrosine 100.0 7.7E-29 2.6E-33 249.9 22.1 343 99-473 33-412 (416)
104 1fg7_A Histidinol phosphate am 100.0 4E-29 1.4E-33 246.8 19.6 313 98-470 28-354 (356)
105 3rq1_A Aminotransferase class 100.0 1.5E-28 5.2E-33 248.0 23.3 338 98-474 37-415 (418)
106 3asa_A LL-diaminopimelate amin 100.0 2.8E-28 9.7E-33 244.6 24.7 328 98-473 32-392 (400)
107 1yaa_A Aspartate aminotransfer 100.0 9.5E-29 3.3E-33 248.9 19.6 339 97-473 27-410 (412)
108 3p1t_A Putative histidinol-pho 100.0 1.5E-27 5.2E-32 233.3 25.8 314 97-472 14-335 (337)
109 2r2n_A Kynurenine/alpha-aminoa 100.0 4.8E-27 1.6E-31 237.6 28.8 300 137-473 80-423 (425)
110 3g7q_A Valine-pyruvate aminotr 100.0 1E-27 3.5E-32 241.6 23.1 335 99-473 31-412 (417)
111 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 3.1E-28 1.1E-32 241.4 18.5 324 100-474 10-370 (371)
112 3f9t_A TDC, L-tyrosine decarbo 100.0 2.2E-27 7.6E-32 236.9 24.7 315 116-472 42-396 (397)
113 3if2_A Aminotransferase; YP_26 100.0 1.7E-27 6E-32 242.1 23.8 303 138-473 86-439 (444)
114 1kmj_A Selenocysteine lyase; p 100.0 4.3E-26 1.5E-30 228.5 32.8 328 97-473 20-404 (406)
115 3t18_A Aminotransferase class 100.0 2.3E-27 7.9E-32 238.9 22.7 335 98-473 36-409 (413)
116 3ez1_A Aminotransferase MOCR f 100.0 3.7E-28 1.3E-32 245.5 16.0 338 101-473 27-414 (423)
117 1qz9_A Kynureninase; kynurenin 100.0 2E-26 6.7E-31 232.1 27.9 323 97-473 27-401 (416)
118 1uu1_A Histidinol-phosphate am 99.9 2.9E-27 9.8E-32 231.5 18.7 308 99-470 19-334 (335)
119 1elu_A L-cysteine/L-cystine C- 99.9 8.9E-27 3E-31 232.4 22.2 318 113-470 25-388 (390)
120 2dr1_A PH1308 protein, 386AA l 99.9 1.4E-26 4.9E-31 230.5 23.4 327 99-473 20-378 (386)
121 3d6k_A Putative aminotransfera 99.9 1.1E-27 3.7E-32 242.0 15.2 336 101-473 34-417 (422)
122 3ppl_A Aspartate aminotransfer 99.9 1.5E-27 5E-32 241.5 15.9 296 142-473 81-419 (427)
123 1t3i_A Probable cysteine desul 99.9 3.8E-25 1.3E-29 222.8 33.2 331 96-473 24-412 (420)
124 1eg5_A Aminotransferase; PLP-d 99.9 2.7E-25 9.3E-30 221.0 28.7 323 100-474 3-376 (384)
125 1vjo_A Alanine--glyoxylate ami 99.9 2.3E-26 7.9E-31 229.9 21.0 324 98-472 33-393 (393)
126 3kgw_A Alanine-glyoxylate amin 99.9 8.6E-27 2.9E-31 232.6 17.8 317 116-473 34-387 (393)
127 3meb_A Aspartate aminotransfer 99.9 1.4E-26 4.7E-31 235.7 18.9 333 101-473 51-443 (448)
128 4eu1_A Mitochondrial aspartate 99.9 4.3E-27 1.5E-31 236.6 14.5 332 99-472 41-409 (409)
129 2z9v_A Aspartate aminotransfer 99.9 8E-26 2.7E-30 225.8 22.6 327 99-473 9-370 (392)
130 1m32_A 2-aminoethylphosphonate 99.9 3.2E-25 1.1E-29 218.9 25.0 329 101-474 5-365 (366)
131 1v72_A Aldolase; PLP-dependent 99.9 4.3E-25 1.5E-29 217.3 25.6 321 99-473 7-352 (356)
132 3zrp_A Serine-pyruvate aminotr 99.9 5E-26 1.7E-30 226.3 18.8 314 116-473 13-362 (384)
133 1ax4_A Tryptophanase; tryptoph 99.9 1E-25 3.6E-30 230.5 21.6 349 97-473 41-440 (467)
134 3f6t_A Aspartate aminotransfer 99.9 3.8E-26 1.3E-30 237.0 18.4 353 98-473 98-524 (533)
135 3f0h_A Aminotransferase; RER07 99.9 1.2E-25 4.2E-30 223.1 21.2 316 116-473 30-373 (376)
136 3cai_A Possible aminotransfera 99.9 4.6E-24 1.6E-28 214.1 32.8 322 98-469 26-404 (406)
137 3ke3_A Putative serine-pyruvat 99.9 2.6E-25 9E-30 221.3 23.5 332 92-473 5-375 (379)
138 1svv_A Threonine aldolase; str 99.9 3.5E-25 1.2E-29 218.2 23.2 323 101-473 15-357 (359)
139 2dkj_A Serine hydroxymethyltra 99.9 1.5E-25 5E-30 225.0 20.2 326 99-473 23-387 (407)
140 3nnk_A Ureidoglycine-glyoxylat 99.9 2.1E-25 7.1E-30 224.1 21.1 316 116-473 24-389 (411)
141 3isl_A Purine catabolism prote 99.9 4.9E-25 1.7E-29 221.8 23.8 321 112-473 14-389 (416)
142 3lvm_A Cysteine desulfurase; s 99.9 1.6E-24 5.4E-29 218.7 27.1 326 96-473 20-398 (423)
143 7aat_A Aspartate aminotransfer 99.9 2.5E-25 8.7E-30 223.0 20.4 334 101-472 30-401 (401)
144 2yrr_A Aminotransferase, class 99.9 4.3E-25 1.5E-29 216.9 18.8 310 116-473 11-352 (353)
145 3k7y_A Aspartate aminotransfer 99.9 9.9E-25 3.4E-29 218.3 20.6 336 100-474 30-405 (405)
146 2oqx_A Tryptophanase; lyase, p 99.9 3.4E-25 1.2E-29 226.6 16.6 345 98-473 40-441 (467)
147 2ez2_A Beta-tyrosinase, tyrosi 99.9 1.8E-24 6.2E-29 220.6 21.7 345 97-473 40-430 (456)
148 1jg8_A L-ALLO-threonine aldola 99.9 2.3E-24 7.8E-29 211.7 21.6 329 99-473 3-345 (347)
149 2huf_A Alanine glyoxylate amin 99.9 1.2E-24 4.2E-29 217.3 19.9 328 96-473 16-382 (393)
150 3e9k_A Kynureninase; kynurenin 99.9 1.6E-24 5.6E-29 221.5 20.3 335 98-473 67-460 (465)
151 3tcm_A Alanine aminotransferas 99.9 8.8E-24 3E-28 217.8 25.4 332 116-473 107-493 (500)
152 1iug_A Putative aspartate amin 99.9 5.4E-24 1.8E-28 209.1 20.5 308 116-473 12-347 (352)
153 2rfv_A Methionine gamma-lyase; 99.9 2.2E-23 7.7E-28 208.8 25.3 286 136-470 61-396 (398)
154 2oga_A Transaminase; PLP-depen 99.9 1.4E-23 4.7E-28 210.4 23.6 318 99-474 30-396 (399)
155 3ihj_A Alanine aminotransferas 99.9 1E-23 3.4E-28 217.1 23.1 331 116-473 102-492 (498)
156 4hvk_A Probable cysteine desul 99.9 2E-23 6.8E-28 207.1 23.7 320 101-473 3-372 (382)
157 4eb5_A Probable cysteine desul 99.9 7.7E-23 2.6E-27 203.2 27.5 320 101-473 3-372 (382)
158 2aeu_A Hypothetical protein MJ 99.9 1.9E-23 6.3E-28 207.5 22.5 318 100-473 29-370 (374)
159 3mad_A Sphingosine-1-phosphate 99.9 3.4E-23 1.1E-27 214.5 25.3 318 116-473 108-468 (514)
160 2vi8_A Serine hydroxymethyltra 99.9 2.5E-23 8.6E-28 208.5 22.3 320 99-473 24-386 (405)
161 3lws_A Aromatic amino acid bet 99.9 1.9E-24 6.6E-29 213.1 12.8 327 99-471 3-356 (357)
162 1cs1_A CGS, protein (cystathio 99.9 8.3E-23 2.8E-27 203.8 24.5 285 136-470 49-383 (386)
163 3vax_A Putative uncharacterize 99.9 4.5E-24 1.5E-28 213.7 15.1 330 92-473 14-399 (400)
164 3ecd_A Serine hydroxymethyltra 99.9 1.7E-22 5.7E-27 203.8 26.4 313 117-473 45-396 (425)
165 2ch1_A 3-hydroxykynurenine tra 99.9 1.4E-23 4.9E-28 209.7 18.3 314 116-473 29-382 (396)
166 3a9z_A Selenocysteine lyase; P 99.9 1.1E-22 3.9E-27 205.8 24.8 333 97-473 17-427 (432)
167 1mdo_A ARNB aminotransferase; 99.9 2E-22 6.8E-27 201.2 25.2 310 117-473 19-385 (393)
168 2bkw_A Alanine-glyoxylate amin 99.9 4.2E-23 1.4E-27 205.3 20.1 313 116-474 16-384 (385)
169 3qhx_A Cystathionine gamma-syn 99.9 4.4E-22 1.5E-26 198.8 26.6 257 136-444 63-342 (392)
170 3pj0_A LMO0305 protein; struct 99.9 3.8E-23 1.3E-27 203.9 18.2 317 111-470 23-358 (359)
171 3n0l_A Serine hydroxymethyltra 99.9 3.2E-22 1.1E-26 201.3 25.0 308 116-473 37-388 (417)
172 1wyu_B Glycine dehydrogenase s 99.9 3.7E-22 1.3E-26 204.4 25.6 316 113-472 75-439 (474)
173 2zy4_A L-aspartate beta-decarb 99.9 2.8E-23 9.4E-28 215.7 17.1 344 111-473 112-521 (546)
174 3acz_A Methionine gamma-lyase; 99.9 5.6E-22 1.9E-26 197.9 25.7 306 112-474 31-389 (389)
175 3ndn_A O-succinylhomoserine su 99.9 1.4E-22 4.6E-27 203.6 21.2 288 136-471 78-413 (414)
176 1e5e_A MGL, methionine gamma-l 99.9 2.5E-22 8.7E-27 201.4 23.1 281 138-473 61-394 (404)
177 4h51_A Aspartate aminotransfer 99.9 1.4E-22 4.7E-27 203.0 20.9 322 117-474 64-417 (420)
178 1b9h_A AHBA synthase, protein 99.9 1.8E-21 6.1E-26 194.1 27.7 311 117-473 16-387 (388)
179 3gbx_A Serine hydroxymethyltra 99.9 1.4E-22 4.9E-27 204.0 19.7 308 116-473 42-395 (420)
180 3uwc_A Nucleotide-sugar aminot 99.9 9.4E-23 3.2E-27 202.2 17.9 300 120-473 21-370 (374)
181 3h7f_A Serine hydroxymethyltra 99.9 1E-21 3.5E-26 199.7 25.8 316 116-473 57-413 (447)
182 1gc0_A Methionine gamma-lyase; 99.9 1.6E-21 5.6E-26 195.2 26.7 286 136-470 62-397 (398)
183 2po3_A 4-dehydrase; external a 99.9 4.5E-21 1.5E-25 193.6 29.6 317 103-473 20-385 (424)
184 2cb1_A O-acetyl homoserine sul 99.9 2.4E-21 8.1E-26 194.9 26.7 301 111-469 28-411 (412)
185 3mc6_A Sphingosine-1-phosphate 99.9 2.7E-22 9.3E-27 206.8 19.8 319 116-473 76-436 (497)
186 1ibj_A CBL, cystathionine beta 99.9 1.6E-22 5.4E-27 205.8 17.7 311 111-473 99-461 (464)
187 3frk_A QDTB; aminotransferase, 99.9 3.7E-22 1.3E-26 198.0 18.9 305 118-472 17-366 (373)
188 3nmy_A Xometc, cystathionine g 99.9 6.2E-22 2.1E-26 197.9 20.2 232 136-409 64-321 (400)
189 2fnu_A Aminotransferase; prote 99.9 8.1E-22 2.8E-26 195.4 20.8 307 116-473 11-371 (375)
190 2qma_A Diaminobutyrate-pyruvat 99.9 4.3E-21 1.5E-25 197.8 26.5 340 97-474 99-496 (497)
191 1pff_A Methionine gamma-lyase; 99.9 1.8E-21 6.3E-26 189.7 21.6 275 143-470 2-330 (331)
192 3nyt_A Aminotransferase WBPE; 99.9 6.1E-22 2.1E-26 196.1 18.1 301 118-470 16-360 (367)
193 1o69_A Aminotransferase; struc 99.9 4.9E-21 1.7E-25 191.5 24.3 322 117-472 11-385 (394)
194 3dr4_A Putative perosamine syn 99.9 1.7E-21 5.8E-26 194.5 19.8 307 117-471 35-390 (391)
195 3ffr_A Phosphoserine aminotran 99.9 5.4E-21 1.9E-25 188.3 21.6 304 116-471 15-361 (362)
196 1qgn_A Protein (cystathionine 99.9 4E-20 1.4E-24 186.7 26.6 284 137-474 112-445 (445)
197 2ctz_A O-acetyl-L-homoserine s 99.9 2.1E-20 7.3E-25 188.4 23.1 281 137-471 56-420 (421)
198 1n8p_A Cystathionine gamma-lya 99.9 5.7E-20 1.9E-24 183.5 22.9 211 137-386 53-273 (393)
199 3cog_A Cystathionine gamma-lya 99.8 4.9E-20 1.7E-24 184.6 20.7 213 137-386 65-283 (403)
200 3b8x_A WBDK, pyridoxamine 5-ph 99.8 2.7E-19 9.3E-24 178.4 26.0 303 116-467 13-389 (390)
201 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.8 4.3E-19 1.5E-23 179.8 26.6 320 98-472 30-434 (437)
202 3bwn_A AT1G70560, L-tryptophan 99.8 2.8E-21 9.7E-26 193.0 10.4 276 138-472 71-385 (391)
203 2c81_A Glutamine-2-deoxy-scyll 99.8 3.7E-19 1.3E-23 179.2 25.0 190 116-336 14-214 (418)
204 2jis_A Cysteine sulfinic acid 99.8 1.4E-18 4.7E-23 179.8 29.6 311 139-474 148-515 (515)
205 2okj_A Glutamate decarboxylase 99.8 1.2E-18 4.1E-23 179.7 26.4 315 139-474 132-502 (504)
206 1w23_A Phosphoserine aminotran 99.8 1.2E-19 4.3E-24 178.6 15.5 308 115-473 13-359 (360)
207 2x3l_A ORN/Lys/Arg decarboxyla 99.8 1.1E-19 3.7E-24 184.5 15.4 287 137-473 55-352 (446)
208 2z67_A O-phosphoseryl-tRNA(SEC 99.8 9.7E-19 3.3E-23 178.1 21.2 296 139-471 133-455 (456)
209 3ri6_A O-acetylhomoserine sulf 99.8 1.8E-18 6.2E-23 174.0 22.7 282 136-472 79-430 (430)
210 3ht4_A Aluminum resistance pro 99.8 1.7E-18 5.9E-23 174.2 22.5 287 116-437 36-344 (431)
211 2c0r_A PSAT, phosphoserine ami 99.8 1.3E-18 4.5E-23 171.6 20.5 303 116-473 15-360 (362)
212 2dgk_A GAD-beta, GADB, glutama 99.8 1.3E-17 4.4E-22 169.7 26.6 321 116-473 54-433 (452)
213 1rv3_A Serine hydroxymethyltra 99.8 2.7E-18 9.2E-23 176.0 21.3 312 116-472 56-429 (483)
214 2hox_A ALLIIN lyase 1; cystein 99.8 5.7E-19 2E-23 178.2 16.0 320 96-473 53-424 (427)
215 2a7v_A Serine hydroxymethyltra 99.8 1.3E-17 4.5E-22 169.7 24.2 311 116-472 66-439 (490)
216 2fq6_A Cystathionine beta-lyas 99.8 1.3E-17 4.5E-22 167.2 23.4 216 136-387 79-300 (415)
217 3ju7_A Putative PLP-dependent 99.8 4.9E-17 1.7E-21 161.2 23.7 313 116-472 14-373 (377)
218 4e1o_A HDC, histidine decarbox 99.8 1.2E-16 4E-21 163.8 26.7 302 138-473 117-477 (481)
219 2fyf_A PSAT, phosphoserine ami 99.8 1.3E-17 4.3E-22 166.8 18.6 303 116-474 51-398 (398)
220 3jzl_A Putative cystathionine 99.8 2.7E-17 9.3E-22 164.2 19.6 281 116-438 30-339 (409)
221 1js3_A DDC;, DOPA decarboxylas 99.8 2E-16 6.8E-21 162.4 26.4 322 119-473 89-473 (486)
222 3hbx_A GAD 1, glutamate decarb 99.8 1.2E-16 4.1E-21 164.5 24.2 320 116-473 68-443 (502)
223 3vp6_A Glutamate decarboxylase 99.8 4.6E-16 1.6E-20 160.4 28.6 334 117-473 108-504 (511)
224 3k40_A Aromatic-L-amino-acid d 99.8 1.7E-16 6E-21 162.1 25.2 301 138-473 112-470 (475)
225 3hvy_A Cystathionine beta-lyas 99.7 3.5E-16 1.2E-20 156.8 23.6 279 116-437 45-355 (427)
226 3i16_A Aluminum resistance pro 99.7 9.3E-16 3.2E-20 153.6 24.0 277 117-437 45-355 (427)
227 1c4k_A Protein (ornithine deca 99.6 5.7E-15 2E-19 156.9 19.5 310 137-472 171-564 (730)
228 2vyc_A Biodegradative arginine 99.6 1.3E-14 4.4E-19 155.5 19.6 235 137-388 203-465 (755)
229 3n75_A LDC, lysine decarboxyla 99.6 1.1E-14 3.6E-19 153.6 18.4 308 137-471 193-557 (715)
230 1wyu_A Glycine dehydrogenase ( 99.6 2.9E-14 1E-18 144.2 20.4 281 139-471 108-437 (438)
231 3e77_A Phosphoserine aminotran 99.5 9.6E-14 3.3E-18 136.5 16.0 317 113-473 21-374 (377)
232 3bc8_A O-phosphoseryl-tRNA(SEC 99.5 2E-12 7E-17 128.7 18.6 233 139-392 98-342 (450)
233 3hl2_A O-phosphoseryl-tRNA(SEC 99.5 4.2E-12 1.4E-16 124.9 20.0 289 154-473 133-460 (501)
234 3qm2_A Phosphoserine aminotran 99.4 3.9E-13 1.3E-17 132.9 12.0 315 99-473 27-384 (386)
235 3m5u_A Phosphoserine aminotran 99.4 1.8E-12 6.1E-17 127.0 16.3 303 116-473 16-359 (361)
236 3ou5_A Serine hydroxymethyltra 98.9 1.2E-07 4E-12 93.1 19.2 314 116-472 66-439 (490)
237 1vhx_A Putative holliday junct 64.6 11 0.00036 31.0 5.4 57 232-290 43-101 (150)
238 1tks_A 3,4-dihydroxy-2-butanon 56.1 11 0.00039 32.4 4.2 36 246-285 159-194 (204)
239 3mio_A DHBP synthase, 3,4-dihy 51.4 19 0.00066 31.1 4.9 36 246-285 158-194 (206)
240 1g57_A DHBP synthase, 3,4-dihy 43.0 29 0.00099 30.3 4.8 35 246-285 167-201 (217)
241 1snn_A DHBP synthase, 3,4-dihy 42.3 28 0.00096 30.5 4.6 35 246-285 178-212 (227)
242 3r0u_A Enzyme of enolase super 34.8 2.1E+02 0.0073 27.1 10.1 146 117-286 143-296 (379)
243 3p8k_A Hydrolase, carbon-nitro 33.9 43 0.0015 30.4 4.8 53 233-285 39-100 (281)
244 3bzy_B ESCU; auto cleavage pro 33.7 23 0.0008 25.7 2.3 22 269-290 29-50 (83)
245 3u9i_A Mandelate racemase/muco 32.7 2.3E+02 0.0078 27.0 10.0 145 116-286 165-326 (393)
246 3ik4_A Mandelate racemase/muco 32.4 2.8E+02 0.0096 26.0 10.5 145 116-286 143-296 (365)
247 1x7f_A Outer surface protein; 31.6 59 0.002 31.1 5.3 60 267-334 74-134 (385)
248 3q45_A Mandelate racemase/muco 31.4 1.6E+02 0.0056 27.7 8.7 146 116-286 140-292 (368)
249 1iv0_A Hypothetical protein; r 30.9 55 0.0019 24.5 4.1 52 232-290 39-96 (98)
250 3s5s_A Mandelate racemase/muco 30.9 2.3E+02 0.0079 26.9 9.7 146 116-287 144-298 (389)
251 3jva_A Dipeptide epimerase; en 30.6 2.2E+02 0.0074 26.6 9.3 146 116-286 139-291 (354)
252 1gff_3 Bacteriophage G4 capsid 29.4 22 0.00077 18.7 1.1 16 86-101 10-25 (26)
253 2vt1_B Surface presentation of 28.0 33 0.0011 25.5 2.3 23 268-290 28-50 (93)
254 3t7y_A YOP proteins translocat 27.9 32 0.0011 25.7 2.3 24 267-290 42-65 (97)
255 3pzt_A Endoglucanase; alpha/be 27.8 1.4E+02 0.0048 27.6 7.4 53 232-287 70-125 (327)
256 1k4i_A 3,4-dihydroxy-2-butanon 27.4 1E+02 0.0035 27.1 5.7 37 245-285 166-212 (233)
257 2ps2_A Putative mandelate race 27.3 2.6E+02 0.0087 26.3 9.3 144 116-285 146-295 (371)
258 3io5_A Recombination and repai 27.2 2.3E+02 0.008 26.3 8.5 45 245-289 110-172 (333)
259 3rcm_A TATD family hydrolase; 27.1 2E+02 0.0068 26.1 8.1 101 154-286 30-133 (287)
260 1k7c_A Rhamnogalacturonan acet 27.0 1.4E+02 0.0046 25.9 6.8 38 247-284 126-167 (233)
261 3c01_E Surface presentation of 26.8 35 0.0012 25.6 2.3 23 268-290 28-50 (98)
262 3fv9_G Mandelate racemase/muco 26.5 2.3E+02 0.008 26.8 8.8 145 116-286 145-300 (386)
263 3ivz_A Nitrilase; alpha-beta s 24.9 49 0.0017 29.5 3.5 53 233-285 20-85 (262)
264 2p0o_A Hypothetical protein DU 23.7 59 0.002 30.9 3.8 59 267-333 50-109 (372)
265 2rdx_A Mandelate racemase/muco 23.5 4.6E+02 0.016 24.5 12.2 144 116-286 145-294 (379)
266 3o63_A Probable thiamine-phosp 23.4 57 0.002 29.0 3.5 98 233-336 46-153 (243)
267 3v7e_A Ribosome-associated pro 23.4 2E+02 0.0069 20.3 6.3 45 233-287 16-60 (82)
268 2dt9_A Aspartokinase; protein- 22.9 2.4E+02 0.0082 22.9 7.2 47 425-471 110-156 (167)
269 2qdd_A Mandelate racemase/muco 22.7 4.2E+02 0.014 24.8 9.9 142 117-286 146-294 (378)
270 3i4k_A Muconate lactonizing en 21.7 3.4E+02 0.012 25.6 8.9 142 116-285 148-301 (383)
271 2lbw_A H/ACA ribonucleoprotein 21.4 1.5E+02 0.0053 22.8 5.3 45 233-286 25-69 (121)
272 2e11_A Hydrolase; dimethylarse 20.9 1.3E+02 0.0044 26.7 5.5 52 233-285 22-81 (266)
273 3bh0_A DNAB-like replicative h 20.9 1.7E+02 0.0058 26.8 6.4 52 232-285 163-226 (315)
274 3tj4_A Mandelate racemase; eno 20.5 4.8E+02 0.016 24.4 9.7 144 116-284 151-303 (372)
275 3eez_A Putative mandelate race 20.2 2.8E+02 0.0097 26.1 8.0 144 116-286 145-294 (378)
276 2v2f_A Penicillin binding prot 20.2 69 0.0024 17.1 2.1 15 90-104 6-20 (26)
277 3vup_A Beta-1,4-mannanase; TIM 20.1 61 0.0021 29.4 3.2 21 269-289 92-112 (351)
278 4a35_A Mitochondrial enolase s 20.0 1.6E+02 0.0056 28.6 6.3 150 113-284 198-354 (441)
No 1
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=100.00 E-value=3.8e-81 Score=629.85 Aligned_cols=406 Identities=33% Similarity=0.547 Sum_probs=373.7
Q ss_pred CCchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHH
Q 011959 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGET 127 (474)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~ 127 (474)
...++|+++++++++++|+|+++++|.|.++ |+++++|+|+|+||.|||+||||+++||++++||+||+|++|+++|
T Consensus 39 ~~~p~s~~~~~~a~~~~pgg~~~~~~~~~~~---P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q 115 (454)
T 4ao9_A 39 DANPASQRQFEAQARYMPGANSRSVLFYAPF---PLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEA 115 (454)
T ss_dssp HHCHHHHHHHHHHTTTSGGGCSSGGGCCSSC---CCEEEEEETTEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHH
T ss_pred hcCcHhHHHHHHHhhhCCCCCCCCccccCCC---CccEEEeecCEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHH
Confidence 3467899999999999999999999988764 9999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCc
Q 011959 128 MKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVA 207 (474)
Q Consensus 128 ~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~ 207 (474)
++++..++.++..+.+|+++|++++|+.++|+|+|||+|||+.|||+||.+++|++||.|+++|||+++.+....+.
T Consensus 116 ~~~~~~~~~~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~--- 192 (454)
T 4ao9_A 116 MQGGINLTGHNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSP--- 192 (454)
T ss_dssp HHTCSCCCSEESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCT---
T ss_pred HhcCCCccCCcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccC---
Confidence 99988787788888999999999999999999999999999999999999999999999999999988765433221
Q ss_pred cCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 011959 208 TLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287 (474)
Q Consensus 208 ~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DE 287 (474)
.. ...+...+||||++.+++.++++++++++||+||+++++|+++|+++||++|+++|++||++||+||
T Consensus 193 -------~~----~~~~~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DE 261 (454)
T 4ao9_A 193 -------TT----VPFDFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDE 261 (454)
T ss_dssp -------TS----CCSEEEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEEC
T ss_pred -------cc----CCCCcccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEEC
Confidence 11 2235788999999999999998888999999999999999999999999999999999999999999
Q ss_pred cccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcC-CCCcccccCCCCChHHHHHHHHHHHHhcC
Q 011959 288 VMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP-AGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366 (474)
Q Consensus 288 v~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~-~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 366 (474)
|||| |+|.+++++++|+.||++|++|+++||+|+|++++++++++.+.+ .+..+|++||++||++|+|++++|+++++
T Consensus 262 V~tG-R~G~~~a~e~~gv~PDi~t~gK~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~ 340 (454)
T 4ao9_A 262 VMTS-RLAPHGLANKLGIRSDLTTLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT 340 (454)
T ss_dssp TTGG-GGSTTCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC
T ss_pred CCcC-CCccccchhccCCCCcEEEeccccCCCCcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc
Confidence 9998 999999999999999999999999999999999999999999975 34677899999999999999999999998
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC
Q 011959 367 PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF 446 (474)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~ 446 (474)
+++++++++++++|+++|+++..+++++.++++.|+|++++|.+.++.++.+....+......+...|+++||++.|.+
T Consensus 341 ~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~~- 419 (454)
T 4ao9_A 341 PEAAGALAERGEALRARLNALCANEGVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPRG- 419 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTTC-
T ss_pred cChhHHHHHHHHHHHHHHHHHHhhCCCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCCC-
Confidence 9999999999999999999999999999999999999999998887788777777777888889999999999999876
Q ss_pred cceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 447 EAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 447 ~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+++++.||++|||+++++|++++.+
T Consensus 420 -~~~~s~~~T~~dId~~l~al~~~l~~ 445 (454)
T 4ao9_A 420 -FVVLSLPLTDADIDRYVAAIGSFIGG 445 (454)
T ss_dssp -EEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 35678899999999999999999976
No 2
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=100.00 E-value=4.2e-74 Score=581.44 Aligned_cols=401 Identities=25% Similarity=0.366 Sum_probs=347.4
Q ss_pred CCCchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHH
Q 011959 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (474)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (474)
..+.++|+++++++++++++|+.++ +|+++++++|+|+||.|||+||||.++++++++||+||+|++|+++
T Consensus 21 ~iPGP~s~~l~~r~~~~~~~~~~~~---------~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ 91 (456)
T 4atq_A 21 AFPGPKSQALAERRSAVVAAGVASG---------VPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQE 91 (456)
T ss_dssp SSSCHHHHHHHHHHHHHBCTTCCCS---------CSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCCCCCC---------CCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHH
Confidence 4667899999999999999988654 4999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC---CCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHh
Q 011959 127 TMKKGTS---FGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 201 (474)
Q Consensus 127 ~~~~~~~---~~~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~ 201 (474)
|+++..+ +..+++...+|+++|.+..| ..++++|+|||+|||+.|||+||.+++|.+||.|+++|||+++++++.
T Consensus 92 q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~ 171 (456)
T 4atq_A 92 AAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMAL 171 (456)
T ss_dssp HHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHH
T ss_pred HHhhccCcccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCcccccccc
Confidence 9998542 34568889999999999998 368999999999999999999999999999999999999999999998
Q ss_pred cCCCCc-cCCC-CCCCCCCCCCCCceEEccC-----------CCHHHHHHHHhc-----CCCCeEEEEEccccCCCCccc
Q 011959 202 AGSGVA-TLGL-PDSPGVPKGATYETLTAPF-----------NDVSALENLFEN-----NKGEIAAIILEPVVGNSGFIA 263 (474)
Q Consensus 202 ~g~~~~-~~~~-~~~~g~~~~~~~~~~~~~~-----------~d~~~le~~l~~-----~~~~~a~vi~ep~~~~~G~i~ 263 (474)
++.... .... |..+ .+..+|+ ++.+.+++.++. +++++++||+||+++++|.+.
T Consensus 172 t~~~~~~~~~~~p~~~--------~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~ 243 (456)
T 4atq_A 172 TAKAMPYKTNFGPFAP--------EVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIV 243 (456)
T ss_dssp CCCCTTTTTTSCSCCS--------SEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBC
T ss_pred ccCccccccCCCCccc--------cceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccc
Confidence 876431 1111 1111 2334433 234444443321 356899999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcc
Q 011959 264 PKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY 342 (474)
Q Consensus 264 ~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~ 342 (474)
|+++||++|+++|++||++||+||||||| |+|.+|+++++|+.||++|++|+++||+|+|++++++++++.+. +..
T Consensus 244 p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggg~P~~av~~~~~i~~~~~---~~~ 320 (456)
T 4atq_A 244 PAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAGGLPLSAITGRADLLDAVH---PGG 320 (456)
T ss_dssp CCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSC---TTS
T ss_pred cchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhhhcccCcCCceeeEecHHHHhccc---ccC
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999887 456
Q ss_pred cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc-----CCeeEEeeeceeEEEEEecCCCcCcc
Q 011959 343 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-----GHAICGGYISGMFGFFFTEGPVYNFE 417 (474)
Q Consensus 343 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-----~~~~~v~~~g~~~~i~~~~~~~~~~~ 417 (474)
|++||++||++|++++++|++++++++.+++++.+++++++|+++..++ +++.+|||.|+|++++|.++.
T Consensus 321 ~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~----- 395 (456)
T 4atq_A 321 LGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPG----- 395 (456)
T ss_dssp SCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTT-----
T ss_pred CCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCC-----
Confidence 8899999999999999999999999999999999999999999998775 568899999999999997642
Q ss_pred cccccchHHHHHHHHHHHHCCeEecccCC--cceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 418 DAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
...++.+....+.+.|+++|+++.+.+. +.+++ ++++|+++||+++++|+++++.
T Consensus 396 -~~~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 396 -SKEPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp -SCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -CCCcCHHHHHHHHHHHHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 1235667778899999999999987653 34554 6999999999999999999975
No 3
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=100.00 E-value=7.8e-72 Score=566.82 Aligned_cols=413 Identities=17% Similarity=0.210 Sum_probs=336.9
Q ss_pred HHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC
Q 011959 54 EEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS 133 (474)
Q Consensus 54 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~ 133 (474)
+.+.++++++...+.+ +++.+... .|++|++|+|+|+||.|||+||||.++||++++||+||+|++|+++|+++...
T Consensus 25 ~~~~~~~~~~~~h~~t-~~~~~~~~--~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~ 101 (473)
T 4e3q_A 25 QSWEARAETYSLYGFT-DMPSLHQR--GTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPG 101 (473)
T ss_dssp CSHHHHHHHHBCCSSC-CHHHHHHH--CCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCC
T ss_pred ccHHHHHhhhcCCCCC-ChhhhccC--CCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhccc
Confidence 3466677777765543 44444433 39999999999999999999999999999999999999999999999998542
Q ss_pred ----CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhc
Q 011959 134 ----FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKA 202 (474)
Q Consensus 134 ----~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~ 202 (474)
++.+++...+|+++|++..| +.++|+|+|||+|||+.|||+||.+ +++.+||.++++|||.+.++++.+
T Consensus 102 ~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~t 181 (473)
T 4e3q_A 102 YHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMT 181 (473)
T ss_dssp CCCCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHS
T ss_pred ccccccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCcccccccc
Confidence 34467889999999999998 6899999999999999999999876 678899999999999999999998
Q ss_pred CCCCccCCCCCCCCCCCCCCCceEEccCC----------CHHHHHHHHhc-CCCCeEEEEEccccCCCCcccCCHHHHHH
Q 011959 203 GSGVATLGLPDSPGVPKGATYETLTAPFN----------DVSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKPDFLNA 271 (474)
Q Consensus 203 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------d~~~le~~l~~-~~~~~a~vi~ep~~~~~G~i~~~~~~l~~ 271 (474)
+........+..+++........+..... ..+++++.+.+ +++++++||+||+++++|++.|+++||++
T Consensus 182 g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~ 261 (473)
T 4e3q_A 182 GKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQA 261 (473)
T ss_dssp CCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHH
T ss_pred ccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHH
Confidence 86433221122222111000000000000 13456665553 55689999999999999999999999999
Q ss_pred HHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcC----CCCccccc
Q 011959 272 IRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP----AGPMYQAG 345 (474)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~----~~~~~~~~ 345 (474)
|+++|++||++||+|||+||| |+|.+|+++++|+.||++|++|++++| +|+|++++++++++.+.. .....|++
T Consensus 262 lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~ 341 (473)
T 4e3q_A 262 ILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGF 341 (473)
T ss_dssp HHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHHhccccccccccccCC
Confidence 999999999999999999999 999999999999999999999999988 899999999999988753 13567899
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchH
Q 011959 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 425 (474)
Q Consensus 346 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 425 (474)
||++||++|++++++|++++++++++++++++++|+++|+++. +++.+.++|+.|+|+++++..+..... ...++..
T Consensus 342 T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~-~~~~v~~vRG~Gl~~gielv~~~~~~~--~~~~~~~ 418 (473)
T 4e3q_A 342 TASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIA-ERPNIGEYRGIGFMWALEAVKDKASKT--PFDGNLS 418 (473)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHT-TSTTEEEEEEETTEEEEEECSBTTTTB--CCCGGGC
T ss_pred CCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHh-cCCCeeEEeecceEEEEEEecCccccc--cccccHH
Confidence 9999999999999999999999999999999999999999875 456788999999999999975432110 1112334
Q ss_pred HHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 426 KFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 426 ~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
....+.+.|+++|+++.+.+ +.+++ ++++|++++|+++++|++++++
T Consensus 419 ~~~~~~~~~~~~Gll~~~~g-~~i~l~PPL~it~~eid~~~~~l~~al~~ 467 (473)
T 4e3q_A 419 VSERIANTCTDLGLICRPLG-QSVVLCPPFILTEAQMDEMFDKLEKALDK 467 (473)
T ss_dssp HHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCcEEEecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 55788999999999999876 34444 6999999999999999998875
No 4
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=100.00 E-value=3e-68 Score=540.90 Aligned_cols=425 Identities=57% Similarity=0.968 Sum_probs=377.6
Q ss_pred CchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHH
Q 011959 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~ 128 (474)
.+++|+++++++++++|+|+++++|.|..++.+|+++++++|+++||.|||+||||++++++++|||+||+|++|+.+++
T Consensus 3 ~~~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~ 82 (429)
T 3k28_A 3 KFDKSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVA 82 (429)
T ss_dssp CCHHHHHHHHHHTTTSGGGSSSGGGGCGGGTCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCChhhcccCCCCHHHHHHHHHHH
Confidence 46789999999999999999999999987777899999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCcc
Q 011959 129 KKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT 208 (474)
Q Consensus 129 ~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~ 208 (474)
+++..++++++...+|++++++++++.++++|+|||+||++.|+++++.++++++||.++++|||++..++...+.+...
T Consensus 83 ~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~ 162 (429)
T 3k28_A 83 ERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVAT 162 (429)
T ss_dssp HHCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC--
T ss_pred hhCcCcCCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccc
Confidence 98766778899999999999999987899999999999999999999988999999999999999999888777765544
Q ss_pred CCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011959 209 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (474)
Q Consensus 209 ~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (474)
...|...+++.....+++.+|++|+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv 242 (429)
T 3k28_A 163 LGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEV 242 (429)
T ss_dssp ---CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECT
T ss_pred cCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 44454555544334568889999999999999866567999999999999999999999999999999999999999999
Q ss_pred ccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCC
Q 011959 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368 (474)
Q Consensus 289 ~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 368 (474)
|+||++|.+++.+++++.||++||||++++|+|+||+++++++++.+.+.+...+.+|+++|++++++++++|+.++ ++
T Consensus 243 ~~g~~~g~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~-~~ 321 (429)
T 3k28_A 243 MTGFRVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT-PE 321 (429)
T ss_dssp TTTTTSSTTHHHHHHTCCCSEEEECGGGGTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC-HH
T ss_pred ccccccCcchHHHHhCCCCceehhhhhhcCCCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH-HH
Confidence 99997777788889999999999999999999999999999999988754456678899999999999999999876 78
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcc
Q 011959 369 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA 448 (474)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~ 448 (474)
++++++++++++++.|+++...++.+..+++.|+++++++...+..++.....++......+.+.|+++||++.+++...
T Consensus 322 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~ 401 (429)
T 3k28_A 322 SYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEG 401 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCCCCC
Confidence 89999999999999999988888888899999999999987665556655555666777889999999999999987777
Q ss_pred eEEecCCcHHHHHHHHHHHHHHHhhC
Q 011959 449 GFTSLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 449 ~~~~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+++++.+|++++++++++|+++++++
T Consensus 402 ~r~~~~~t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 402 LFLSTVHSDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp BCCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999998764
No 5
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=5.4e-68 Score=539.85 Aligned_cols=426 Identities=47% Similarity=0.871 Sum_probs=373.9
Q ss_pred CCchhHHHHHHHHhhhCCCCCCCccccccccC-CCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHH
Q 011959 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVG-GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (474)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (474)
.+.++|+++++++++++|+|+++++|.|..++ ..|+++++++|+|+||.||++||||.++++++++||+||+|++|+.+
T Consensus 3 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~ 82 (434)
T 3l44_A 3 VKFTKSEALHKEALEHIVGGVNSPSRSFKAVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITT 82 (434)
T ss_dssp SCCHHHHHHHHHHHHHBGGGCSSGGGSSGGGTCSCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCBTCHHHHHHHHH
T ss_pred CCChhHHHHHHHHHhhCCCCcCccccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHH
Confidence 34678999999999999999999999887665 57999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCC
Q 011959 127 TMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV 206 (474)
Q Consensus 127 ~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (474)
+++++..++++++...+|++++++.+++.++++|+|||+||++.|+++++.++++++||+++++|||++..++...+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~ 162 (434)
T 3l44_A 83 AAENGVLYGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGP 162 (434)
T ss_dssp HHHHCSCCSSCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-----
T ss_pred HHHhCcCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcc
Confidence 99987667788999999999999999878999999999999999999999889999999999999999998888777655
Q ss_pred ccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 011959 207 ATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286 (474)
Q Consensus 207 ~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D 286 (474)
.....|...+++.....+++.+|++|+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~D 242 (434)
T 3l44_A 163 STLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYD 242 (434)
T ss_dssp --CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEE
T ss_pred cccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 44444545555443445688999999999999998655679999999999999999999999999999999999999999
Q ss_pred ccccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC
Q 011959 287 EVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366 (474)
Q Consensus 287 Ev~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 366 (474)
|||+|||+|.+++.+++++.||++||||++++|+|+||+++++++++.+.+.+...+++|+++|++++++++++|+.+++
T Consensus 243 Ev~~g~~~g~~~~~~~~~~~~di~t~sK~~~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~ 322 (434)
T 3l44_A 243 EVITAFRFMYGGAQDLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ 322 (434)
T ss_dssp CTTTTTTSSSSCHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS
T ss_pred ccccceeccccHHHHHcCCCCCeeehhhhhcCCcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc
Confidence 99999988888888999999999999999999999999999999999887544567888999999999999999999888
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC
Q 011959 367 PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF 446 (474)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~ 446 (474)
++++++++++++++++.|+++...++....+++.|+|+++++......++.....++......+.+.|+++||++.+++.
T Consensus 323 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~ 402 (434)
T 3l44_A 323 EGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKY 402 (434)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCC
Confidence 89999999999999999999887788888899999999999965444443333334555667889999999999999887
Q ss_pred cceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 447 EAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 447 ~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+.+++++.+|++++++++++|++++++
T Consensus 403 ~~~rl~~~~t~e~i~~~l~~l~~~l~~ 429 (434)
T 3l44_A 403 EAWFLTTEHTKEDIEYTIEAVGRAFAA 429 (434)
T ss_dssp CCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEecccCHHHHHHHHHHHHHHHHH
Confidence 788889999999999999999999864
No 6
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=100.00 E-value=2.2e-67 Score=534.53 Aligned_cols=425 Identities=53% Similarity=0.952 Sum_probs=367.5
Q ss_pred chhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHH
Q 011959 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (474)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~ 129 (474)
+++|+++++++++++|+|+++++|.|..++..|+++++++|+|+||.||++||||.++++++++||+||+|++|+.++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~ 83 (429)
T 4e77_A 4 MSKSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVE 83 (429)
T ss_dssp CCHHHHHHHHHHHHSGGGCSSGGGGTTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHT
T ss_pred chhhHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHH
Confidence 34789999999999999999998988877778999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccC
Q 011959 130 KGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL 209 (474)
Q Consensus 130 ~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~ 209 (474)
++..++++++...+|++++++.+++.++++|+|||+||++.|+++++.++++++||+++++|||.+...+...+.+....
T Consensus 84 ~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~ 163 (429)
T 4e77_A 84 RGLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTL 163 (429)
T ss_dssp TCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC----------------
T ss_pred hCcccCCCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCccccc
Confidence 87667788999999999999999878999999999999999999999999999999999999999987776666544333
Q ss_pred CCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011959 210 GLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (474)
Q Consensus 210 ~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (474)
..+...+++......++.++++|+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~ 243 (429)
T 4e77_A 164 GQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVM 243 (429)
T ss_dssp --CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETT
T ss_pred CCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 33445566555566788999999999999998766689999999999999999999999999999999999999999999
Q ss_pred cCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCH
Q 011959 290 TGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (474)
Q Consensus 290 ~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (474)
+|||+|..+..+++++.||++||||++++|+|+||+++++++++.+...+...+.+||++|+++++++.++|+.++++++
T Consensus 244 ~g~r~g~~~~~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 323 (429)
T 4e77_A 244 TGFRVALAGAQDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGV 323 (429)
T ss_dssp TBTTTBTTCHHHHTTCCCSEEEEEGGGGTTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTH
T ss_pred cCcccCcchHHHhcCCCCCeeeecccccCCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCH
Confidence 99988888888999999999999999999999999999999999887544556788999999999999999999977899
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecC-CCcCcccccccchHHHHHHHHHHHHCCeEecccCCcc
Q 011959 370 YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG-PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA 448 (474)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~ 448 (474)
.++++++++++++.|+++...++....+++.|+|+++++.+. +..++.....++.....++.+.|+++||++.+++.+.
T Consensus 324 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~ 403 (429)
T 4e77_A 324 YETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAFEA 403 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecCCCC
Confidence 999999999999999998888888888999999999999764 3455555555666677889999999999999988777
Q ss_pred eEEecCCcHHHHHHHHHHHHHHHhhC
Q 011959 449 GFTSLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 449 ~~~~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+++++.+|++++++++++|+++++++
T Consensus 404 ~~~~~~~t~e~i~~~l~~l~~~l~~~ 429 (429)
T 4e77_A 404 GFMSLAHSNEDIQKTVNAARRCFAKL 429 (429)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred EEEeccCCHHHHHHHHHHHHHHHHhC
Confidence 88899999999999999999998764
No 7
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=100.00 E-value=1e-66 Score=529.40 Aligned_cols=426 Identities=72% Similarity=1.206 Sum_probs=379.6
Q ss_pred CchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHH
Q 011959 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~ 128 (474)
.+++|+++++++++++|+|+++++|.|..++..|+++++|+|+++||.||++||||.++++++++||+||+|++|+.+++
T Consensus 2 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~ 81 (427)
T 3fq8_A 2 KTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAM 81 (427)
T ss_dssp CCHHHHHHHHHHTTTSGGGSSSGGGGCTTTTSCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhhcCCCcccccccccccCCCCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHHHHHHHHHH
Confidence 46789999999999999999999998877777799999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCcc
Q 011959 129 KKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT 208 (474)
Q Consensus 129 ~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~ 208 (474)
+++..++++++...+|++++++.+++.++++|+|||+||++.|+++++.++++++||+++++|||++..++...+.+...
T Consensus 82 ~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 161 (427)
T 3fq8_A 82 EKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVAT 161 (427)
T ss_dssp TTCSCCSSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHH
T ss_pred HhCCCcCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccc
Confidence 88766677899999999999999987899999999999999999999999999999999999999998887776665443
Q ss_pred CCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011959 209 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (474)
Q Consensus 209 ~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (474)
...|...+++.....+++.+|++|+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv 241 (427)
T 3fq8_A 162 LGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEV 241 (427)
T ss_dssp HTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECT
T ss_pred cCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 33455555554444568899999999999999887778999999999999999999999999999999999999999999
Q ss_pred ccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCC
Q 011959 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368 (474)
Q Consensus 289 ~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 368 (474)
|+|||+|..+..+++++.||++||||++++|+|+||+++++++++.+.+.+...+.+|+++|+++++++.++|+.+++++
T Consensus 242 ~~g~~~g~~~~~~~~~~~~di~t~sK~~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~ 321 (427)
T 3fq8_A 242 ITGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPG 321 (427)
T ss_dssp TTBTTTBTTHHHHHTTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTT
T ss_pred ccccccCcchhhHhcCCCCChhhhhhhhhCCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 99997777788889999999999999999999999999999999988754455678899999999999999999988889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcc
Q 011959 369 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA 448 (474)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~ 448 (474)
+.++++++++++++.|+++...++.+..+++.|+++++++...+..++.....++......+.+.|+++||++.+++...
T Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~~r 401 (427)
T 3fq8_A 322 TYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEA 401 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCCCC
Confidence 99999999999999999988778877888999999999987655454544455666667789999999999999988777
Q ss_pred eEEecCCcHHHHHHHHHHHHHHHhhC
Q 011959 449 GFTSLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 449 ~~~~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+++++.+|++++++++++|+++++++
T Consensus 402 ~~~~~~~t~e~i~~~l~~l~~~l~~~ 427 (427)
T 3fq8_A 402 GFTSLAHTEEDIDATLAAARTVMSAL 427 (427)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEeeCcCCHHHHHHHHHHHHHHHHhC
Confidence 88899999999999999999998764
No 8
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=100.00 E-value=1.3e-70 Score=557.30 Aligned_cols=404 Identities=32% Similarity=0.532 Sum_probs=356.3
Q ss_pred chhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHH
Q 011959 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (474)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~ 129 (474)
+++|+++++++++++|+|+++++|.|.+ .|+++++++|+|+||.|||+||||++++++.++||+||+|++|+.+|++
T Consensus 54 ~~~s~~l~~~~~~~~~~g~~~~~~~~~~---~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~ 130 (465)
T 2yky_A 54 NPVSAGHHERARRSMPGGNTRSILFHRP---FPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALA 130 (465)
Confidence 6678999999999999999999988765 3999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccC
Q 011959 130 KGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL 209 (474)
Q Consensus 130 ~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~ 209 (474)
++..++++++...+|+++|++++|+.++++|+|||+||++.|+++||.++++++||+++++|||+++.++ +|
T Consensus 131 ~~~~~~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~--sg------ 202 (465)
T 2yky_A 131 VGLNLSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFA--SG------ 202 (465)
Confidence 8766677889999999999999987789999999999999999999999999999999999999998877 22
Q ss_pred CCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011959 210 GLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (474)
Q Consensus 210 ~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (474)
|...+++. +++.+||||+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|
T Consensus 203 --~~~~g~~~----~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~ 276 (465)
T 2yky_A 203 --HAPTNAPY----HVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVM 276 (465)
Confidence 11223322 467788999999999998655689999999999999999999999999999999999999999999
Q ss_pred cCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcC--CCCcccccCCCCChHHHHHHHHHHHHhcCC
Q 011959 290 TGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 367 (474)
Q Consensus 290 ~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~--~~~~~~~~t~~~~~~~~aaa~aal~~~~~~ 367 (474)
+ ||+|.+++++++|+.||++||||++++|+|+||+++++++++.+.+ .+..++++||++||++|++++++|+.++++
T Consensus 277 ~-~r~g~~~a~~~~gv~pDi~t~sK~lg~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~ 355 (465)
T 2yky_A 277 T-SRLSGGGAQEMLGISADLTTLGKYIGGGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTR 355 (465)
Confidence 9 8888888899999999999999999999999999999999999875 233567889999999999999999999888
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCc
Q 011959 368 GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE 447 (474)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~ 447 (474)
++++++++++++++++|+++..+++++.++++.|+|++++|.+++..++.+.+.++......+.+.|+++||++.|+++.
T Consensus 356 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~~ 435 (465)
T 2yky_A 356 QAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGMY 435 (465)
Confidence 89999999999999999998877887788999999999998753333443333444455678899999999999987644
Q ss_pred ceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 448 AGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 448 ~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
. +++.+|++||++++++|++++++
T Consensus 436 ~--~s~~~t~edid~~l~~l~~~l~~ 459 (465)
T 2yky_A 436 A--LSLEIADAGRDAFAEALADFIGE 459 (465)
Confidence 3 78899999999999999998865
No 9
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=1.4e-63 Score=505.78 Aligned_cols=422 Identities=54% Similarity=0.919 Sum_probs=357.1
Q ss_pred CchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHH
Q 011959 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~ 128 (474)
.+++|+++++++++++|+|+++++|.|..++..|+++++++|+++||.||++||||.++++++++||+||+|++|+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~ 81 (424)
T 2e7u_A 2 ERPISEAYFQEAKRHIPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETL 81 (424)
T ss_dssp CCHHHHHHHHHHHHHSGGGSSSGGGGCTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcCCCcCCcceeccccCCCCeeEEeeecCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHH
Confidence 45678999999999999999999998876655699999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCcc
Q 011959 129 KKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVAT 208 (474)
Q Consensus 129 ~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~ 208 (474)
+++..++++.+...+|++++++++|+.++|+|++||+||++.|+++||.++++++||+++++|||++..++...+.+...
T Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~ 161 (424)
T 2e7u_A 82 ERGLTFGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALT 161 (424)
T ss_dssp HTCSCCSSCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCC
T ss_pred HhCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccc
Confidence 88766678899999999999999977789999999999999999999999999999999999999988777655543221
Q ss_pred CCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecc
Q 011959 209 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288 (474)
Q Consensus 209 ~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv 288 (474)
...|...+++.....+++.+|++|+++|++.++++++++++|++||+++++|.+.++++|+++|+++ ++||++||+||+
T Consensus 162 ~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv 240 (424)
T 2e7u_A 162 LGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEV 240 (424)
T ss_dssp BCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECT
T ss_pred cCCCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecC
Confidence 1112223332111235778899999999999975434789999999999999999999999999999 999999999999
Q ss_pred ccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-C
Q 011959 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-P 367 (474)
Q Consensus 289 ~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~ 367 (474)
|+||++|..+..+++++.||++||||++++|+|+||+++++++++.+......++.+||++||++++++.++|+.+++ +
T Consensus 241 ~~g~~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~ 320 (424)
T 2e7u_A 241 MTGFRLAFGGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENP 320 (424)
T ss_dssp TTTTTSSTTHHHHHHTCCCSEEEECGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCT
T ss_pred ccccccchhHHHHHhCCCcchhhhhhhhhCCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 999977777778889999999999999999999999999999999887533445778999999999999999998877 8
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCc
Q 011959 368 GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE 447 (474)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~ 447 (474)
++.++++++++++++.|+++..++++...+++.|+|+++++......++.....++.....++.+.|+++||++.+++..
T Consensus 321 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~ 400 (424)
T 2e7u_A 321 GYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNFE 400 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCCC
Confidence 89999999999999999988766777667889999999988542222222222233345567889999999999998766
Q ss_pred ceEEecCCcHHHHHHHHHHHHHHH
Q 011959 448 AGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 448 ~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
.+++++.+|++++++++++|++++
T Consensus 401 ~~~~~~~~t~~~i~~~l~~l~~~l 424 (424)
T 2e7u_A 401 AAFLSVAHREEDVEKTLEALRKAL 424 (424)
T ss_dssp CEECCTTCCHHHHHHHHHHHHHHC
T ss_pred ceEeeccCCHHHHHHHHHHHHHhC
Confidence 778889999999999999998763
No 10
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=100.00 E-value=4.1e-62 Score=498.49 Aligned_cols=402 Identities=23% Similarity=0.312 Sum_probs=343.0
Q ss_pred CCCchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHH
Q 011959 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (474)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (474)
..+.+++++++++++++++.++.+. .|+++++|+|+|+||.||++||||.++++++++||+||+|++|+.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~ 88 (451)
T 3oks_A 18 AIPGPRSQALIDRKGTAVARGVGTT---------MPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRS 88 (451)
T ss_dssp CSSCHHHHHHHHHHHHHBCTTBCCS---------CSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHhhccCCcCCC---------CCceEEEeecCEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHH
Confidence 3456789999999999998876532 4899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC---CCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHh
Q 011959 127 TMKKGTSF---GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 201 (474)
Q Consensus 127 ~~~~~~~~---~~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~ 201 (474)
+++++.++ .++++...+|+++|++.+| ..++|+|+|||+||++.|+++++.++++++||+++++|||++..++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~ 168 (451)
T 3oks_A 89 QVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMAL 168 (451)
T ss_dssp HHTTCSCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHH
T ss_pred HHHhcccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHh
Confidence 99886443 3578899999999999997 357999999999999999999999999999999999999999999988
Q ss_pred cCCC-CccCCCCCCCCCCCCCCCceEEccCC------------------CHHHHHHHHhc--CCCCeEEEEEccccCCCC
Q 011959 202 AGSG-VATLGLPDSPGVPKGATYETLTAPFN------------------DVSALENLFEN--NKGEIAAIILEPVVGNSG 260 (474)
Q Consensus 202 ~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~------------------d~~~le~~l~~--~~~~~a~vi~ep~~~~~G 260 (474)
++.. .+...+. .....+..+|++ +++.+++.+++ .++++++||+||+++++|
T Consensus 169 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG 241 (451)
T 3oks_A 169 TAKVMPYKDGFG-------PFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGG 241 (451)
T ss_dssp CCCCTTTTTTCC-------SCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTT
T ss_pred cCCCcccccCCC-------CCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCC
Confidence 7753 2211110 111234445544 24445555543 335799999999999999
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCC
Q 011959 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG 339 (474)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~ 339 (474)
.+.++++|+++|+++|++||++||+||||+|| |+|.+++.+++++.||++||||++++|||+||+++++++++.+.
T Consensus 242 ~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G~~iG~v~~~~~~~~~~~--- 318 (451)
T 3oks_A 242 FIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPH--- 318 (451)
T ss_dssp CBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCEEEEEEHHHHTCSC---
T ss_pred ccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhhCCcceEEEEECHHHHhhhc---
Confidence 99999999999999999999999999999999 99988899999999999999999999999999999999999887
Q ss_pred CcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccc
Q 011959 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDA 419 (474)
Q Consensus 340 ~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~ 419 (474)
+..+.+|+++||++|++++++|+.+++++++++++++++++++.|+++..+++.+..+++.|+|+++++.+.. .
T Consensus 319 ~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~~~~~~------~ 392 (451)
T 3oks_A 319 VSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAG------T 392 (451)
T ss_dssp TTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEBSTT------S
T ss_pred CCCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEeeEEEEEEEecCc------c
Confidence 3457889999999999999999988778999999999999999999998888888899999999999986411 1
Q ss_pred cccchHHHHHHHHHHHHCCeEecccCC--cceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 420 KKSETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 420 ~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
..++......+.+.|+++||++.+++. ..+|+ ++.+|+++|++++++|++++++
T Consensus 393 ~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 393 TEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp CCBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 224555667899999999999998764 45565 6789999999999999999875
No 11
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=100.00 E-value=1e-62 Score=501.00 Aligned_cols=422 Identities=41% Similarity=0.726 Sum_probs=353.1
Q ss_pred chhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHH
Q 011959 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (474)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~ 129 (474)
.++++++++++++++++|+.+++|.|.. .+|+++++++|+|+||.||++||||.++++++++||+||+|++|+.++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~ 86 (434)
T 2epj_A 9 GEKSRMLFERTKELFPGGVNSPVRAAVK--PYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALA 86 (434)
T ss_dssp CHHHHHHHHHHTTTSGGGSSSGGGGGCS--SSCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHhhcCCCcCcccccccC--CCCeeEEeeecCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999888776621 24899999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccC
Q 011959 130 KGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL 209 (474)
Q Consensus 130 ~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~ 209 (474)
++..++++.+...+++++|++++|+.++|+|++||+||++.|+++||.++++++||+++++|||++..++...+......
T Consensus 87 ~~~~~~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~ 166 (434)
T 2epj_A 87 RGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHY 166 (434)
T ss_dssp TCSCCSSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------
T ss_pred hCCCCCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCcccc
Confidence 86556778899999999999998778899999999999999999998899999999999999999887765554322111
Q ss_pred CCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011959 210 GLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (474)
Q Consensus 210 ~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (474)
..|...+++.....+++.++++|+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|
T Consensus 167 ~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~ 246 (434)
T 2epj_A 167 GVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVV 246 (434)
T ss_dssp CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETT
T ss_pred CCCCCCCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcch
Confidence 11222233211123477888999999999998544478999999999999999999999999999999999999999999
Q ss_pred cCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCH
Q 011959 290 TGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (474)
Q Consensus 290 ~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (474)
+||++|..+..+++++.||++||||++++|+|+||+++++++++.+......++.+||++||++++++.++|+.++++++
T Consensus 247 ~g~~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~ 326 (434)
T 2epj_A 247 TGFRLGLEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPV 326 (434)
T ss_dssp TTTTSSTTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCH
T ss_pred hceeCCcchhhHHhCCCCCeeeecchhcCCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCH
Confidence 99977777778889999999999999999999999999999999887433445678999999999999999998877889
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcce
Q 011959 370 YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG 449 (474)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~ 449 (474)
.++++++++++++.|+++..++++...+++.|+|+++++.+.+..++.....++.....++.+.|+++||++.+++...+
T Consensus 327 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~ 406 (434)
T 2epj_A 327 YSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNLEAV 406 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTTSCE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCCCcE
Confidence 99999999999999998866667766788999999999864222222222222334456789999999999999876677
Q ss_pred EEecCCcHHHHHHHHHHHHHHHhh
Q 011959 450 FTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 450 ~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
++++.+|++++++++++|++++++
T Consensus 407 ~~~~~~t~e~i~~~l~~l~~~l~~ 430 (434)
T 2epj_A 407 FTGLPHQGEALEIAVEGLRSSLKT 430 (434)
T ss_dssp ECCTTCSHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCHHHHHHHHHHHHHHHHH
Confidence 888999999999999999998865
No 12
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=6.3e-62 Score=497.24 Aligned_cols=400 Identities=25% Similarity=0.349 Sum_probs=340.8
Q ss_pred CCCchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHH
Q 011959 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGE 126 (474)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~ 126 (474)
..+.+++++++++.++++++++.+. .|+++++++|+|+||.||++||||+++++++++||+||+|++|+.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~ 91 (453)
T 4ffc_A 21 PLPGPRSGALAERRRAAVSAGVGST---------APVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIAD 91 (453)
T ss_dssp CSSCHHHHHHHHHHHHHBCTTTCCS---------CSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhcCCCcCCC---------CCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHH
Confidence 3456788999999999999887532 4899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC---CCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHh
Q 011959 127 TMKKGTSF---GAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 201 (474)
Q Consensus 127 ~~~~~~~~---~~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~ 201 (474)
+++++.++ .++.+...+|+++|++.+| ..++|+|+|||+||++.|+++++.++++++||+++++|||++..++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~ 171 (453)
T 4ffc_A 92 QATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMAL 171 (453)
T ss_dssp HHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHH
T ss_pred HHHhccccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhh
Confidence 99886543 3578899999999999997 368999999999999999999999999999999999999999999988
Q ss_pred cCCC-CccCCCCCCCCCCCCCCCceEEccCC----C-------------HHHHHHHHhcCCCCeEEEEEccccCCCCccc
Q 011959 202 AGSG-VATLGLPDSPGVPKGATYETLTAPFN----D-------------VSALENLFENNKGEIAAIILEPVVGNSGFIA 263 (474)
Q Consensus 202 ~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~----d-------------~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~ 263 (474)
++.. .....+. .....+..+|++ | ++.|++.+. ++++++||+||+++++|.+.
T Consensus 172 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~--~~~~aavi~ep~~~~gG~~~ 242 (453)
T 4ffc_A 172 TAKSMPYKSQFG-------PFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIG--AQSLAAIIIEPIQGEGGFIV 242 (453)
T ss_dssp CCCCTTTTTTSC-------SCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTC--GGGEEEEEECSSBTTTTSBC
T ss_pred cCCCcccccCCC-------CCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcC--CCCEEEEEEcCCCCCCCccc
Confidence 7753 2211110 011123344433 3 244444442 34799999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcc
Q 011959 264 PKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY 342 (474)
Q Consensus 264 ~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~ 342 (474)
++++|+++|+++|++||++||+||||+|| |+|.+++.+++++.||++||||++++|+|+||+++++++++.+. +..
T Consensus 243 ~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~G~~~G~~~~~~~i~~~~~---~~~ 319 (453)
T 4ffc_A 243 PAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVY---AGG 319 (453)
T ss_dssp CCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCEEEEEEHHHHTTSC---TTS
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcCCcCeEEEEECHHHHhhhc---ccC
Confidence 99999999999999999999999999999 99988889999999999999999999999999999999999887 345
Q ss_pred cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCccccccc
Q 011959 343 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 422 (474)
Q Consensus 343 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~ 422 (474)
+.+|+++||++|++++++|+.++++++.++++++++++++.|+++..+++.+..+++.|+|+++++.+.. ...+
T Consensus 320 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~ 393 (453)
T 4ffc_A 320 LGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIVKPG------TLEP 393 (453)
T ss_dssp SCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEEETTEEEEEEBCTT------SCCB
T ss_pred cCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeceEEEEEEecCc------ccCC
Confidence 7789999999999999999988778999999999999999999998888888899999999999986421 1234
Q ss_pred chHHHHHHHHHHHHCCeEecccCC--cceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 423 ETTKFARFYRGMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 423 ~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+......+.+.|+++||++.+++. ..+|+ ++.+|+++|++++++|++++++
T Consensus 394 ~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 448 (453)
T 4ffc_A 394 DAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIRA 448 (453)
T ss_dssp CHHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 555677899999999999998764 45555 6889999999999999999875
No 13
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=100.00 E-value=1.6e-61 Score=496.05 Aligned_cols=407 Identities=20% Similarity=0.243 Sum_probs=331.7
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC
Q 011959 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT 132 (474)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~ 132 (474)
+.++.++.++++..... .++.+.. ..|+++++++|+|+||.|||+||||++|+++++|||+||+|++|+.++++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~-~~~~~~~--~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~ 88 (472)
T 3hmu_A 12 TAELQALDAAHHLHPFS-ANNALGE--EGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELP 88 (472)
T ss_dssp HHHHHHHHHHHEECTTE-EHHHHHH--HCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhhccCCcc-ccccccc--CCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc
Confidence 45666666666543322 1111111 14899999999999999999999999999999999999999999999998853
Q ss_pred ----CCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHh
Q 011959 133 ----SFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVK 201 (474)
Q Consensus 133 ----~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~ 201 (474)
.++++++...+|+++|++.+| +.++|+|+|||+||++.|+++++.+ +++++||+++++|||++..++..
T Consensus 89 ~~~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~ 168 (472)
T 3hmu_A 89 YYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSAL 168 (472)
T ss_dssp CCCSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhc
Confidence 124578899999999999998 5789999999999999999999887 47899999999999999999888
Q ss_pred cCCCCccCCCCCCCCCCCCCCCceEEccC----CC-----------HHHHHHHHhcC-CCCeEEEEEccccCCCCcccCC
Q 011959 202 AGSGVATLGLPDSPGVPKGATYETLTAPF----ND-----------VSALENLFENN-KGEIAAIILEPVVGNSGFIAPK 265 (474)
Q Consensus 202 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~----~d-----------~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~ 265 (474)
++.......+...+++ ..+..|+ ++ +++|++++++. ++++++||+||+++++|.+.++
T Consensus 169 ~~~~~~~~~~~~~~~~------~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~ 242 (472)
T 3hmu_A 169 GGMAGMHAQSGLIPDV------HHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAP 242 (472)
T ss_dssp SCCHHHHHTTCCCSSE------EEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCC
T ss_pred cCChhhccccCCCCCc------EEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCC
Confidence 7764322111111111 1222222 22 78899988743 3579999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCCCCccc
Q 011959 266 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQ 343 (474)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~~~~~ 343 (474)
++||++|+++|++||++||+||||+|| |+|.+++.+++++.||++||||++++| +|+|++++++++++.+. ...+.+
T Consensus 243 ~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~sK~l~gg~~plG~v~~~~~i~~~~~-~~~~~~ 321 (472)
T 3hmu_A 243 DSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIG-KDEFNH 321 (472)
T ss_dssp TTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHT-TSCBCC
T ss_pred HHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceeeechhhhcCCcceEEEEECHHHHHhcc-cCCccc
Confidence 999999999999999999999999999 999888899999999999999999976 89999999999999984 235568
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCccccccc
Q 011959 344 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN-KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 422 (474)
Q Consensus 344 ~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~-~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~ 422 (474)
++||++||++|+|++++|+.+++++++++++ ++++++++.|+++ .+++.+.++++.|+|+++++..+.... .+ ..+
T Consensus 322 ~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~v~~vr~~G~~~~i~~~~~~~~~-~~-~~~ 398 (472)
T 3hmu_A 322 GYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEAL-TDHPLVGEAKIVGMMASIALTPNKASR-AK-FAS 398 (472)
T ss_dssp CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGG-GGSTTEEEEEEETTEEEEEECSCGGGT-CC-BSS
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hcCCCeEEEEecCceEEEEEecCcccc-cc-ccc
Confidence 8899999999999999999987789999999 9999999999765 457888899999999999986431100 00 001
Q ss_pred c-hHHHHHHHHHHHHCCeEecccCCcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 423 E-TTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 423 ~-~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+ ......+.+.|+++||++.+.+ ..+|++ +++|+++|++++++|++++++
T Consensus 399 ~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~~~~t~e~i~~~l~~l~~~l~~ 451 (472)
T 3hmu_A 399 EPGTIGYICRERCFANNLIMRHVG-DRMIISPPLVITPAEIDEMFVRIRKSLDE 451 (472)
T ss_dssp CTTHHHHHHHHHHHHTTBCCEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCcEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 3345678899999999999887 677775 899999999999999998864
No 14
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=100.00 E-value=4.6e-61 Score=493.31 Aligned_cols=407 Identities=18% Similarity=0.241 Sum_probs=332.3
Q ss_pred HHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC
Q 011959 54 EEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS 133 (474)
Q Consensus 54 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~ 133 (474)
..+.++.++++....+ .++.+. ...|+++++++|+|+||.||++||||++|++++++||+||+|++|+.+++++...
T Consensus 12 ~~~~~~~~~~~~~~~~-~~~~~~--~~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~ 88 (476)
T 3i5t_A 12 GAVGAAMRDHILLPAQ-EMAKLG--KSAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPY 88 (476)
T ss_dssp -CHHHHHHHHBCCTTE-EGGGTT--TCCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCC
T ss_pred hHHHhhcccccccCcc-cccccc--cCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccC
Confidence 3455555555443221 222221 1248999999999999999999999999999999999999999999999988432
Q ss_pred ---CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcC
Q 011959 134 ---FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAG 203 (474)
Q Consensus 134 ---~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g 203 (474)
+.++++...+|+++|++++| +.++|+|+|||+||++.|+++++.+ +++++||+++++|||++..++..++
T Consensus 89 ~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~ 168 (476)
T 3i5t_A 89 ASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTG 168 (476)
T ss_dssp CCTTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCC
T ss_pred cccCccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccC
Confidence 24678999999999999998 6889999999999999999999988 8899999999999999999998887
Q ss_pred CCCccCCC-CCCCCCCCCCCCceEEccC-----CC---------HHHHHHHHhcC-CCCeEEEEEccccCCCCcccCCHH
Q 011959 204 SGVATLGL-PDSPGVPKGATYETLTAPF-----ND---------VSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPD 267 (474)
Q Consensus 204 ~~~~~~~~-~~~~g~~~~~~~~~~~~~~-----~d---------~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~~~ 267 (474)
.......+ +...++ ..+.+|+ ++ +++||+++++. ++++++||+||+++++|.+.++++
T Consensus 169 ~~~~~~~~~~~~~~~------~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~ 242 (476)
T 3i5t_A 169 RTGNWPNFDIAQDRI------SFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAG 242 (476)
T ss_dssp CGGGCTTSCCCCTTE------EEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTT
T ss_pred ChhhccccCCCCCCc------EEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHH
Confidence 65433211 111111 1223333 22 78999988753 357999999999999999999999
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCc-ccCCCcccc-ccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCC----CC
Q 011959 268 FLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQE-YFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GP 340 (474)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~-~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~----~~ 340 (474)
||++|+++|++||++||+||||+|| |+|.+++.+ ++++.||++||||++++| +|+|++++++++++.+.+. +.
T Consensus 243 ~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~ 322 (476)
T 3i5t_A 243 YHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSW 322 (476)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCE
T ss_pred HHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcchhhhhhhhcCCCcCeEEEEECHHHHHHHhcCCccccc
Confidence 9999999999999999999999999 999888888 999999999999999999 8999999999999998742 22
Q ss_pred cccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCccccc
Q 011959 341 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420 (474)
Q Consensus 341 ~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~ 420 (474)
+.+++||++||++|+|++++|+.+++++++++++++++++++.|+++ .+++.+.++++.|+|+++++.+...... ..
T Consensus 323 ~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~~v~~v~~~G~~~~i~~~~~~~~~~--~~ 399 (476)
T 3i5t_A 323 FTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASL-RDLPGVAETRSVGLVGCVQCLLDPTRAD--GT 399 (476)
T ss_dssp ECCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTT-TTSTTEEEEEEETTEEEEEECCC-------CC
T ss_pred ccccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hcCCCeEEEEecCceeEEEEecCccccc--cc
Confidence 46778999999999999999999887899999999999999999965 4678888999999999999865321000 00
Q ss_pred ccchHHHHHHHHHHHHCCeEecccCCcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 421 ~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.++......+.+.|+++||++.+.+ ..+|++ +++|+++|++++++|++++++
T Consensus 400 ~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~~ 453 (476)
T 3i5t_A 400 AEDKAFTLKIDERCFELGLIVRPLG-DLCVISPPLIISRAQIDEMVAIMRQAITE 453 (476)
T ss_dssp HHHHHHHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHCCCEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 0112235678899999999999876 677875 899999999999999999864
No 15
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=100.00 E-value=6.8e-60 Score=482.69 Aligned_cols=413 Identities=21% Similarity=0.275 Sum_probs=340.1
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHh
Q 011959 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (474)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 130 (474)
.+++++.++.++++.... +.+.. ..|+++++|+|+|+||.||++||||+++++++++||+||+|++|+.+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~----~~~~~--~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~ 80 (452)
T 3n5m_A 7 KQTDELLAKDEQYVWHGM----RPFSP--NSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQT 80 (452)
T ss_dssp HHHHHHHHHHHHHBCCTT----SCSCG--GGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTT
T ss_pred ccHHHHHHHhhhhccccc----ccccc--CCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHh
Confidence 346778888888776532 11211 248999999999999999999999999999999999999999999999988
Q ss_pred cCC--CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhh---c---CCcEEEEEeCCCCCCchhHHHhc
Q 011959 131 GTS--FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF---T---GRERIIKFEGCYHGHADPFLVKA 202 (474)
Q Consensus 131 ~~~--~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~---~---~~~~ii~~~~~yhg~~~~~~~~~ 202 (474)
+.. .+++++...+|+++|+++++....|+|++||+||++.|+++++.+ + ++++||+++++|||++..++..+
T Consensus 81 ~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~ 160 (452)
T 3n5m_A 81 LSYFPMSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAAT 160 (452)
T ss_dssp CCCCCTTSEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSC
T ss_pred cCCcccccCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcC
Confidence 532 346788999999999999873323999999999999999998866 6 78999999999999999888887
Q ss_pred CCCCccCCC-CCCCCCCCCCCCceEEccCCC---------HHHHHHHHh-cCCCCeEEEEEccc-cCCCCcccCCHHHHH
Q 011959 203 GSGVATLGL-PDSPGVPKGATYETLTAPFND---------VSALENLFE-NNKGEIAAIILEPV-VGNSGFIAPKPDFLN 270 (474)
Q Consensus 203 g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~d---------~~~le~~l~-~~~~~~a~vi~ep~-~~~~G~i~~~~~~l~ 270 (474)
+.......+ |...++......+.+.+++|| +++||++++ .+++++++||+||+ +| +|.+.|+++|++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~ 239 (452)
T 3n5m_A 161 GQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMK 239 (452)
T ss_dssp CCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHH
T ss_pred CchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHH
Confidence 765432211 222222111122233456677 999999997 44457999999999 89 999999999999
Q ss_pred HHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcC---CCCccccc
Q 011959 271 AIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP---AGPMYQAG 345 (474)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~---~~~~~~~~ 345 (474)
+|+++|++||++||+||||+|| |+|.+++.+++++.||++||||++++| +|+|++++++++++.+.. .+.+.+++
T Consensus 240 ~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~ 319 (452)
T 3n5m_A 240 AVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHIN 319 (452)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCC
T ss_pred HHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEeecccccCCCcceEEEEECHHHHHHHhhccCCCCccccC
Confidence 9999999999999999999999 999888899999999999999999999 999999999999999864 34556788
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchH
Q 011959 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 425 (474)
Q Consensus 346 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 425 (474)
|+++||+++++++++|+.++++++.++++++++++++.|+++..+++.+..+++.|+|+++++..+.... . .-+..
T Consensus 320 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~-~---~~~~~ 395 (452)
T 3n5m_A 320 TFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETK-E---PIDND 395 (452)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSSCEEEEEEEETTTT-E---ECCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCCccc-C---CCCHH
Confidence 9999999999999999988778999999999999999999988888888899999999999986432110 0 00123
Q ss_pred HHHHHHHHHHHCCeEecccC------CcceEE--ecCCcHHHHHHHHHHHHHHHhhC
Q 011959 426 KFARFYRGMLEEGVYFAPSQ------FEAGFT--SLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 426 ~~~~~~~~l~~~Gv~v~~~~------~~~~~~--~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
....+.+.|+++||++.+.+ ...+|+ ++.+|+++|++++++|+++++++
T Consensus 396 ~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 452 (452)
T 3n5m_A 396 KIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMERI 452 (452)
T ss_dssp HHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhC
Confidence 44678899999999999876 356777 58999999999999999998764
No 16
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=100.00 E-value=1.2e-59 Score=480.27 Aligned_cols=395 Identities=24% Similarity=0.346 Sum_probs=328.7
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEc-CCC--EEEeccCChhhccCCCCCHHHHHHHHHHHH
Q 011959 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDI-DGN--EYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (474)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~-dG~--~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~ 129 (474)
++++.++.++++...... +......|+++++++|+|+||. ||| +||||+++|+++++||+||+|++|+.++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~ 105 (457)
T 3tfu_A 30 PEQIIAVDGAHLWHPYSS----IGREAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLR 105 (457)
T ss_dssp HHHHHHHHHHHBCCTTCC----SSCCSSCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCccccc----ccccCCCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHH
Confidence 456777777776543321 1001124899999999999999 999 999999999999999999999999999998
Q ss_pred hcCC---CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHH
Q 011959 130 KGTS---FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFL 199 (474)
Q Consensus 130 ~~~~---~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~ 199 (474)
+... ..++++...+|+++|++++| +.++|+|+|||+||++.|+++++.+ +++++||.++++|||.+..++
T Consensus 106 ~~~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~ 185 (457)
T 3tfu_A 106 VMNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAM 185 (457)
T ss_dssp HCSCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHH
T ss_pred hccCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhh
Confidence 8533 23578889999999999998 6789999999999999999999887 788999999999999999888
Q ss_pred HhcCC-CCccCCC-CCCCCCCCCCCCceEEcc-------CCCHHHHHHHHhcCCCCeEEEEEcc-ccCCCCcccCCHHHH
Q 011959 200 VKAGS-GVATLGL-PDSPGVPKGATYETLTAP-------FNDVSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFL 269 (474)
Q Consensus 200 ~~~g~-~~~~~~~-~~~~g~~~~~~~~~~~~~-------~~d~~~le~~l~~~~~~~a~vi~ep-~~~~~G~i~~~~~~l 269 (474)
..++. ......+ +...+ ...++ ++|+++|+++++++++++++||+|| ++|++|.+.++++|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~--------~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l 257 (457)
T 3tfu_A 186 SICDPHGGMHSLWTDVLAA--------QVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYL 257 (457)
T ss_dssp TTSCCC----------CCC--------CEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHH
T ss_pred cccCCcccccccccCCCCC--------ceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHH
Confidence 77542 1111101 11111 22222 2589999999986556899999999 999999999999999
Q ss_pred HHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhc--CCCCccccc
Q 011959 270 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVA--PAGPMYQAG 345 (474)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~--~~~~~~~~~ 345 (474)
++|+++|++||++||+||||+|| |+|.+++.+++++.||++||||+++|| +|+||+++++++++.+. +.+.+.+++
T Consensus 258 ~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~ 337 (457)
T 3tfu_A 258 HDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGP 337 (457)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCC
T ss_pred HHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeEec
Confidence 99999999999999999999999 999989999999999999999999988 69999999999999985 223456888
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchH
Q 011959 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETT 425 (474)
Q Consensus 346 t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 425 (474)
||++||++|++++++|+.++++++.++++++++++++.|+++. +++.+.++++.|+|+++++.+.. +
T Consensus 338 t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~~v~~vr~~G~~~~i~l~~~~----------~-- 404 (457)
T 3tfu_A 338 TFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTAR-ALPAVTDVRVCGAIGVIECDRPV----------D-- 404 (457)
T ss_dssp TTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGG-GSTTEEEEEECSSCEEEEESSCC----------C--
T ss_pred CCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-cCCCeeeeecCCeEEEEEECCcc----------c--
Confidence 9999999999999999999888999999999999999998865 56777889999999999985421 1
Q ss_pred HHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHhhC
Q 011959 426 KFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 426 ~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
..++.+.|+++||++.+.+ ..+|+ ++++|++++++++++|+++++++
T Consensus 405 -~~~~~~~l~~~Gv~v~~~~-~~lRi~p~~~~t~eei~~~l~~L~~~l~~~ 453 (457)
T 3tfu_A 405 -LAVATPAALDRGVWLRPFR-NLVYAMPPYICTPAEITQITSAMVEVARLV 453 (457)
T ss_dssp -HHHHHHHHHHTTEECCCBT-TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHCCeEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3578899999999999865 45676 47899999999999999998763
No 17
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=100.00 E-value=2.5e-59 Score=479.39 Aligned_cols=409 Identities=18% Similarity=0.217 Sum_probs=333.1
Q ss_pred HHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC---
Q 011959 56 AFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--- 132 (474)
Q Consensus 56 ~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--- 132 (474)
+.++.++++..... .++.+...+.+|+++++++|+|+||.||++||||++|++++++||+||+|++|+.++++++.
T Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~ 87 (460)
T 3gju_A 9 LNAWDRDHFFHPST-HMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYH 87 (460)
T ss_dssp HHHHHHHHCCCTTS-CHHHHHHTCSCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHhhhcccccCcc-ccccccccCCCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccc
Confidence 44444455433322 23333333334699999999999999999999999999999999999999999999998743
Q ss_pred -CCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCC
Q 011959 133 -SFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGS 204 (474)
Q Consensus 133 -~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~ 204 (474)
.++++++...+|+++|+++++ +.++|+|+|||+||++.|+++++.+ +++++||+++++|||++..++..++.
T Consensus 88 ~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~ 167 (460)
T 3gju_A 88 AYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGL 167 (460)
T ss_dssp CCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCC
T ss_pred cccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCC
Confidence 234678899999999999987 6789999999999999999998876 67899999999999999999988876
Q ss_pred CCccCCC-CCCCCCCCCCCCceEEccC----CC------------HHHHHHHHhc-CCCCeEEEEEccccCCCCcccCCH
Q 011959 205 GVATLGL-PDSPGVPKGATYETLTAPF----ND------------VSALENLFEN-NKGEIAAIILEPVVGNSGFIAPKP 266 (474)
Q Consensus 205 ~~~~~~~-~~~~g~~~~~~~~~~~~~~----~d------------~~~le~~l~~-~~~~~a~vi~ep~~~~~G~i~~~~ 266 (474)
......+ +...++ ..+.+|+ +| +++|++++++ .++++++||+||+++++|.+.+++
T Consensus 168 ~~~~~~~~~~~~~~------~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~ 241 (460)
T 3gju_A 168 DLFHNAFDLPRAPV------LHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPA 241 (460)
T ss_dssp GGGTTTTTCSCTTE------EEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCT
T ss_pred cccccccCCCCCCC------EEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCH
Confidence 5432211 111111 1122222 43 6899998874 235799999999999999999999
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCC----CC
Q 011959 267 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA----GP 340 (474)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~----~~ 340 (474)
+||++|+++|++||++||+||||+|| |+|.+++.+++++.||++||||++++| +|+||+++++++++.+... ..
T Consensus 242 ~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~ 321 (460)
T 3gju_A 242 GYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGS 321 (460)
T ss_dssp THHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeeeehhhcCCCCCeEEEEECHHHHHHHhcccccccc
Confidence 99999999999999999999999999 999888889999999999999999988 7999999999999988521 24
Q ss_pred cccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCccccc
Q 011959 341 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420 (474)
Q Consensus 341 ~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~ 420 (474)
..+.+||++||++|++++++|+.+++++++++++++.+++++.|.+.+.+++.+.++++.|+|+++++..+.... ...
T Consensus 322 ~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~ 399 (460)
T 3gju_A 322 LGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGMLAAVEFVADKDDR--VFF 399 (460)
T ss_dssp CSCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTT--BCC
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeeeEEEEEEEccCcccc--ccc
Confidence 567889999999999999999998778999999999999999998888888888899999999999986432110 001
Q ss_pred ccchHHHHHHHHHHHHCCeEecccCC-cceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 421 KSETTKFARFYRGMLEEGVYFAPSQF-EAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 421 ~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.++......+.+.|+++||++.+.+. ..+|++ +++|+++|++++++|++++++
T Consensus 400 ~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 455 (460)
T 3gju_A 400 DASQKIGPQVATALAASGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVKS 455 (460)
T ss_dssp CGGGCHHHHHHHHHHHTTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHCCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 12233456789999999999998763 567775 899999999999999999865
No 18
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=100.00 E-value=9.3e-60 Score=481.79 Aligned_cols=415 Identities=31% Similarity=0.490 Sum_probs=323.7
Q ss_pred chhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHH
Q 011959 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (474)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~ 129 (474)
+++++++++++++++|+|+++++|.|.+ +|+++++++|+++||.||++||||.++++++++||+||+|++|+.++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~ 87 (453)
T 2cy8_A 11 TEGSVFWAQRARSVMPDGVTADTRAFDP---HGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALS 87 (453)
T ss_dssp CHHHHHHHHHHHHHSCCC------CCSS---CCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHhhcCCCCCccccccCC---CCceEEEeecCEEEECCCCEEEECcccHhhcccCCCCHHHHHHHHHHHH
Confidence 5678999999999999999888777653 4899999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccC
Q 011959 130 KGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATL 209 (474)
Q Consensus 130 ~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~ 209 (474)
++..++++.+++.++++++++++++.++|+|++||+||++.|+++||.++++++||+++++|||++...+...+...
T Consensus 88 ~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~--- 164 (453)
T 2cy8_A 88 HGVQYAASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHF--- 164 (453)
T ss_dssp TTCSSCSSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHHCCCEEEEECC--------------------
T ss_pred hCCCCCCCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCcc---
Confidence 86666788999999999999998778899999999999999999988899999999999999999887765444310
Q ss_pred CCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc
Q 011959 210 GLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM 289 (474)
Q Consensus 210 ~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~ 289 (474)
..+...+++.....+++.++++|+++|+++++++++++++|++||+++++|.+.++++|+++|+++|++||++||+||+|
T Consensus 165 ~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~ 244 (453)
T 2cy8_A 165 DGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVI 244 (453)
T ss_dssp -----------CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCcCCCCCccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCc
Confidence 00111233222233577888999999999998544578999999999889999999999999999999999999999999
Q ss_pred cCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCC--CCcccccCCCCChHHHHHHHHHHHH-hcC
Q 011959 290 TGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKR-LKE 366 (474)
Q Consensus 290 ~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~--~~~~~~~t~~~~~~~~aaa~aal~~-~~~ 366 (474)
+||+.|..+..+++++.||++||||++++|+|+||+++++++++.+... ....+.+|+++||++++++.++|+. + .
T Consensus 245 ~g~~~g~~~~~~~~~~~~di~s~sK~l~~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~-~ 323 (453)
T 2cy8_A 245 SGFRVGNHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL-E 323 (453)
T ss_dssp TTTTTCTTHHHHHHTCCCSEEEEEGGGGTTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH-H
T ss_pred cccccCchhhhHHhCCCCcEEEEChhhhCCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh-h
Confidence 9997677777788899999999999999999999999999999988641 2234667999999999999999998 7 6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEec-----C-CCcCcccccccchHHHHHHHHHHHHCCeE
Q 011959 367 PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE-----G-PVYNFEDAKKSETTKFARFYRGMLEEGVY 440 (474)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 440 (474)
+++.++++++++++++.|+++..++++...+++.|+|+++++.. . ...++.....++.....++.+.|+++||+
T Consensus 324 ~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~ 403 (453)
T 2cy8_A 324 DDVCAKINDLGQFAREAMNHLFARKGLNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVD 403 (453)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEEeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeE
Confidence 78999999999999999998866677767788999999999853 1 00011111112233456788999999999
Q ss_pred ecccCCcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 441 FAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 441 v~~~~~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+.+.+ .+++++.+|++++++++++|++++++
T Consensus 404 v~~~~--~~~l~~~~t~~~i~~~l~~l~~~l~~ 434 (453)
T 2cy8_A 404 IGGRG--SVFLSAQHEREHVEHLVTTFDRVLDR 434 (453)
T ss_dssp CBTTT--EEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeCCC--CEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 97653 36778999999999999999998864
No 19
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=100.00 E-value=2.2e-59 Score=478.29 Aligned_cols=403 Identities=23% Similarity=0.298 Sum_probs=314.3
Q ss_pred HHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC-
Q 011959 55 EAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS- 133 (474)
Q Consensus 55 ~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~- 133 (474)
++.++.++++..... .++.+ ...|+++++|+|+|+||.||++||||.++++++++||+||+|++|+.++++++..
T Consensus 4 ~~~~~~~~~~~~~~~-~~~~~---~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~ 79 (448)
T 3dod_A 4 DLIEKSKKHLWLPFT-QMKDY---DENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHS 79 (448)
T ss_dssp HHHHHHHHHBCCTTC-CHHHH---HHSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCC
T ss_pred HHHHhhhhccccccc-ccccc---cCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCc
Confidence 355566666544322 22222 2248999999999999999999999999999999999999999999999988532
Q ss_pred --CCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh---cC---CcEEEEEeCCCCCCchhHHHhcCC
Q 011959 134 --FGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---TG---RERIIKFEGCYHGHADPFLVKAGS 204 (474)
Q Consensus 134 --~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~---~~---~~~ii~~~~~yhg~~~~~~~~~g~ 204 (474)
.+++++...+|+++|++++| +.++|+|+|||+||++.|+++++.+ ++ +++||+++++|||++..++..++.
T Consensus 80 ~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~ 159 (448)
T 3dod_A 80 TLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSI 159 (448)
T ss_dssp CCSSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC----------------
T ss_pred cccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCC
Confidence 34677889999999999998 6789999999999999999999887 77 899999999999999888877765
Q ss_pred CCccCCC-CCCCCCCCCCCCceEEccC----------------CCHHHHHHHHhcCCCCeEEEEEcccc-CCCCcccCCH
Q 011959 205 GVATLGL-PDSPGVPKGATYETLTAPF----------------NDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKP 266 (474)
Q Consensus 205 ~~~~~~~-~~~~g~~~~~~~~~~~~~~----------------~d~~~le~~l~~~~~~~a~vi~ep~~-~~~G~i~~~~ 266 (474)
......+ |...+ +..+|+ +|+++||++++++++++++||+||++ +++|.+.+++
T Consensus 160 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~ 231 (448)
T 3dod_A 160 ELFHHVYGPLMFE--------SYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPE 231 (448)
T ss_dssp ---------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCT
T ss_pred ccccccccCCCCC--------ceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCH
Confidence 4322111 11111 222222 35899999998544579999999999 9999999999
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcC----CCC
Q 011959 267 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP----AGP 340 (474)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~----~~~ 340 (474)
+|+++|+++|++||++||+||||+|| ++|.+++.+++++.||++||||++++| +|+|++++++++++.+.. ...
T Consensus 232 ~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~ 311 (448)
T 3dod_A 232 GYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKT 311 (448)
T ss_dssp THHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCC
T ss_pred HHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhhccccCCc
Confidence 99999999999999999999999999 999888889999999999999999999 599999999999999873 122
Q ss_pred cccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCccccc
Q 011959 341 MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420 (474)
Q Consensus 341 ~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~ 420 (474)
..+++|+++||+++++++++|+.++++++.++++++++++++.|++ +..++.+..+++.|.++++++..+..... . .
T Consensus 312 ~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~-~ 388 (448)
T 3dod_A 312 FFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQLGFMCGAELVRSKETKE-P-Y 388 (448)
T ss_dssp CCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEEETTEEEEEECSBTTTTB-C-C
T ss_pred ccccCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEeeeEEEEEEEccCccccc-c-c
Confidence 5677899999999999999999887789999999999999999998 66778888899999999999864321000 0 0
Q ss_pred ccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 421 KSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 421 ~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.........+++.|+++||++.|.+ ..+|+ ++.+|+++|++++++|++++++
T Consensus 389 ~~~~~~~~~~~~~l~~~Gv~~~~~~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 442 (448)
T 3dod_A 389 PADRRIGYKVSLKMRELGMLTRPLG-DVIAFLPPLASTAEELSEMVAIMKQAIHE 442 (448)
T ss_dssp CGGGCHHHHHHHHHHHTTEECCEET-TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHCCcEEeccC-CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 0011123578899999999999876 66777 7899999999999999999865
No 20
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=100.00 E-value=1e-58 Score=474.77 Aligned_cols=384 Identities=20% Similarity=0.277 Sum_probs=320.6
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHhhCC-CC
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAPCLLENVLAEMVISAVP-SI 155 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~~~~~~~~~la~~l~~~~~-~~ 155 (474)
.|+++++|+|+|+||.||++||||+++++++++||+||+|++|+.++++++. .++++++...+|+++|++++| +.
T Consensus 32 ~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~ 111 (459)
T 4a6r_A 32 GARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGF 111 (459)
T ss_dssp --CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTC
T ss_pred CCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCC
Confidence 4899999999999999999999999999999999999999999999998743 224678999999999999998 58
Q ss_pred CeEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEc
Q 011959 156 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA 228 (474)
Q Consensus 156 ~~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~ 228 (474)
++|+|+|||+||++.|+++++.+ +++++||+++++|||++..++..++.......+ +...+ ...+.+
T Consensus 112 ~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 185 (459)
T 4a6r_A 112 DRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPG------MAHIEQ 185 (459)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSS------EEEECC
T ss_pred CEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCC------CEEeCC
Confidence 89999999999999999998876 478999999999999999999888765432111 11111 112222
Q ss_pred cC----C---C--------HHHHHHHHhcC-CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011959 229 PF----N---D--------VSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (474)
Q Consensus 229 ~~----~---d--------~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (474)
|+ + | +++|++++++. ++++++|++||+++++|.+.++++||++|+++|++||++||+||||+||
T Consensus 186 p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~ 265 (459)
T 4a6r_A 186 PWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGF 265 (459)
T ss_dssp CCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTT
T ss_pred CccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCC
Confidence 22 2 2 78899988742 3578999999999999999999999999999999999999999999999
Q ss_pred -ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHH
Q 011959 293 -RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (474)
Q Consensus 293 -r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (474)
|+|.+++.+++++.||++||||++++| +|+|++++++++++.+.......+++||++||++|++++++|+.++++++.
T Consensus 266 gr~G~~~~~~~~~~~pdi~t~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 345 (459)
T 4a6r_A 266 GRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIV 345 (459)
T ss_dssp TTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHH
T ss_pred CcccccchHhhcCCCCCeeehhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHH
Confidence 999888889999999999999999976 899999999999998863224557789999999999999999988778999
Q ss_pred HHHH-HHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcce
Q 011959 371 EYLN-KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG 449 (474)
Q Consensus 371 ~~~~-~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~ 449 (474)
++++ ++++++++.|.+.+.+++.+.++++.|+|+++++..+.... ....++......+.+.|+++||++.+.+ ..+
T Consensus 346 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~i 422 (459)
T 4a6r_A 346 QRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFTLVKNKAKR--ELFPDFGEIGTLCRDIFFRNNLIMRACG-DHI 422 (459)
T ss_dssp HHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECSBTTTT--BCCSSTTHHHHHHHHHHHHTTEECEEET-TEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEecCcccc--ccccchHHHHHHHHHHHHHCCeEEecCC-CEE
Confidence 9999 99999999995555667888899999999999986432110 0111334456788999999999999976 677
Q ss_pred EEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 450 FTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 450 ~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
|++ +++|++++++++++|++++++
T Consensus 423 Ri~~~~~~t~e~i~~~l~~l~~~l~~ 448 (459)
T 4a6r_A 423 VSAPPLVMTRAEVDEMLAVAERCLEE 448 (459)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 775 899999999999999998864
No 21
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=100.00 E-value=6.3e-60 Score=509.25 Aligned_cols=411 Identities=18% Similarity=0.262 Sum_probs=320.7
Q ss_pred HHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccC--EEEEcCCC----EEEeccCChhhccCCCC-CHHHHHHHHHH
Q 011959 55 EAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGS--HMWDIDGN----EYIDYVGSWGPAIIGHA-DDQVLAALGET 127 (474)
Q Consensus 55 ~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~--~~~d~dG~----~~iD~~~~~~~~~lG~~-~p~v~~a~~~~ 127 (474)
++.++.++++....+ .++.+.. ..|++|++|+|. |+||.||| +|||++++||++++||+ ||+|++|+++|
T Consensus 333 ~~~~~~~~~~whp~t-~~~~~~~--~~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q 409 (831)
T 4a0g_A 333 GMAKLAGEVFWWPFT-QHKLVHQ--ETVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYT 409 (831)
T ss_dssp HHHHHHHHHBCCTTC-CGGGCCG--GGCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccCCcc-CcccccC--CCCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHH
Confidence 344555566554332 2222222 138899999995 99999999 99999999999999999 99999999999
Q ss_pred HHhcCCC---CCCCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHHHHHHHHh-Hhhc--------------CCcEEEEE
Q 011959 128 MKKGTSF---GAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLA-RAFT--------------GRERIIKF 187 (474)
Q Consensus 128 ~~~~~~~---~~~~~~~~~la~~l~~~~~-~-~~~v~~~~sGseA~~~al~~a-r~~~--------------~~~~ii~~ 187 (474)
+++..+. ++.++...+|+++|++..| + .++|+|+|||+||||.|||+| |.++ +|.+||.+
T Consensus 410 ~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~ 489 (831)
T 4a0g_A 410 AARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIAL 489 (831)
T ss_dssp HHHHSSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEE
T ss_pred HhhcccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEe
Confidence 9985332 3568889999999999998 4 689999999999999999999 5553 46799999
Q ss_pred eCCCCCCchhHHHhcCCCCccCC--CCCCCCC------CCC---CCCceEEcc------------CCCH-----------
Q 011959 188 EGCYHGHADPFLVKAGSGVATLG--LPDSPGV------PKG---ATYETLTAP------------FNDV----------- 233 (474)
Q Consensus 188 ~~~yhg~~~~~~~~~g~~~~~~~--~~~~~g~------~~~---~~~~~~~~~------------~~d~----------- 233 (474)
+++|||.+.++++.++...+... .+...+. |.. .....+.+| |+|.
T Consensus 490 ~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 569 (831)
T 4a0g_A 490 RGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDAS 569 (831)
T ss_dssp TTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGS
T ss_pred cCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccch
Confidence 99999999999999886543220 0111010 000 000011222 3332
Q ss_pred -------HHHHHHHh-----cCCCCeEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc
Q 011959 234 -------SALENLFE-----NNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA 299 (474)
Q Consensus 234 -------~~le~~l~-----~~~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~ 299 (474)
+.|++.|+ .+++++++||+||+ ++++|.+.++++||++|+++|++||++||+||||+|| |+|.+|+
T Consensus 570 ~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa 649 (831)
T 4a0g_A 570 TLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETT 649 (831)
T ss_dssp HHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSST
T ss_pred hhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchh
Confidence 56777776 34568999999997 9999999999999999999999999999999999999 9999999
Q ss_pred ccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCCC---CcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHH
Q 011959 300 QEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAG---PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNK 375 (474)
Q Consensus 300 ~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~---~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 375 (474)
++++|+.||++||||++++| +|+|++++++++++.+.... .+.|++||++||++|++++++|+.++++++.+++++
T Consensus 650 ~e~~gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~ 729 (831)
T 4a0g_A 650 TELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITS 729 (831)
T ss_dssp HHHHSSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCT
T ss_pred hHhcCCCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999998 79999999999999987432 356889999999999999999999988778888777
Q ss_pred HHHHHHH----HHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE
Q 011959 376 ITGELTQ----GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT 451 (474)
Q Consensus 376 ~~~~l~~----~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~ 451 (474)
+++++++ .+.+.+.+++.+.++++.|+|+++++..+... ..++......+.+.|+++||++.|.+ +.+++
T Consensus 730 ~~~~l~~~l~~~l~~~l~~~~~v~~vrg~Gl~~~iel~~~~~~-----~~~~~~~a~~~~~~l~e~Gv~v~p~g-~~lrl 803 (831)
T 4a0g_A 730 QGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADASN-----SGYASLYAKSLLIMLREDGIFTRPLG-NVIYL 803 (831)
T ss_dssp TSSBBCCCSCHHHHHHHHHSTTEEEEEEETTEEEEEEC--------------CHHHHHHHHHHHHTTEECCCBT-TEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCceeEeecccEEEEEEecCccc-----cccchHHHHHHHHHHHHCCcEEEecC-CEEEE
Confidence 6666543 45455567888999999999999999753211 01223445678999999999999876 45665
Q ss_pred --ecCCcHHHHHHHHHHHHHHHhhC
Q 011959 452 --SLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 452 --~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
++.+|+++|++++++|+++++++
T Consensus 804 ~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 804 MCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999998764
No 22
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=100.00 E-value=9e-57 Score=456.64 Aligned_cols=389 Identities=21% Similarity=0.321 Sum_probs=313.9
Q ss_pred chhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHH
Q 011959 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (474)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~ 129 (474)
+.++++++++.++++.++.. ..|+++++++|+|+||.||++||||.+|++++++||+||+|++|+.++++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~ 95 (433)
T 1z7d_A 26 LKTPEDYINNELKYGAHNYD----------PIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAK 95 (433)
T ss_dssp -CCHHHHHHHHHHHBCCCCC----------CEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHhcccccC----------CCCceEEeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHH
Confidence 34577888888887755321 13889999999999999999999999999889999999999999999998
Q ss_pred hcCC--CCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhh--------cCCcEEEEEeCCCCCCchhHH
Q 011959 130 KGTS--FGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFL 199 (474)
Q Consensus 130 ~~~~--~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~--------~~~~~ii~~~~~yhg~~~~~~ 199 (474)
+... ..++.+...+|+++|++++ +.++|+|++||+||++.|+++++.+ +++++||+++++|||++..++
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~la~~~-g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~ 174 (433)
T 1z7d_A 96 NLTICSRAFFSVPLGICERYLTNLL-GYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCI 174 (433)
T ss_dssp TCSCCCTTSEEHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC---------
T ss_pred hCCCccCCcCCHHHHHHHHHHHhhc-CCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhh
Confidence 7532 2356788899999999988 5789999999999999999998754 256899999999999988777
Q ss_pred HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHh
Q 011959 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 279 (474)
Q Consensus 200 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~ 279 (474)
..++.......+ .+ ....+..+|++|+++|+++++. +++++|++||+++++|.+.++++++++|+++|++|
T Consensus 175 ~~~g~~~~~~~~--~p-----~~~~v~~~~~~d~~~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~ 245 (433)
T 1z7d_A 175 SASTTKKCTSNF--GP-----FAPQFSKVPYDDLEALEEELKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY 245 (433)
T ss_dssp ------------------------CEEEECTTCHHHHHHHHTS--TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT
T ss_pred cccCCccccccC--CC-----CCCCeEEeCCCCHHHHHHHhCC--CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHc
Confidence 665532211100 00 1124677889999999999962 47899999999999999988899999999999999
Q ss_pred CCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHH
Q 011959 280 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAG 357 (474)
Q Consensus 280 g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa 357 (474)
|++||+||+|+|| ++|.+++++++++.||++||||++++| +|+||+++++++++.+.. ..+.+||++||++++++
T Consensus 246 g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~~~G~v~~~~~~~~~l~~---~~~~~t~~~~~~~~aaa 322 (433)
T 1z7d_A 246 NVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKP---GEHGSTYGGNPLAASIC 322 (433)
T ss_dssp TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCT---TCCCCTTTTCHHHHHHH
T ss_pred CCEEEEecCccCCCcCCcchhhHhcCCCCCEEEECccccCCCCCeEEEEECHHHHhhhcc---ccccccCCCCHHHHHHH
Confidence 9999999999999 989888888999999999999999999 899999999999988763 34678999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC
Q 011959 358 IHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 437 (474)
Q Consensus 358 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 437 (474)
.++|+.++++++.++++++++++++.|+++...++.+..+++.|+|+++++.... ....++.+.|+++
T Consensus 323 ~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~------------~~~~~~~~~l~~~ 390 (433)
T 1z7d_A 323 VEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL------------VNVLDICLKLKEN 390 (433)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT------------CCHHHHHHHHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh------------hHHHHHHHHHHHC
Confidence 9999988777899999999999999999876567777788999999999885320 0125788899999
Q ss_pred CeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 438 GVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 438 Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
||++.+.+...+|+ ++.+|++++++++++|++++++
T Consensus 391 Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 428 (433)
T 1z7d_A 391 GLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKF 428 (433)
T ss_dssp TEECCEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEecCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 99999876567777 5688999999999999998864
No 23
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=100.00 E-value=1.9e-56 Score=454.93 Aligned_cols=388 Identities=23% Similarity=0.349 Sum_probs=324.4
Q ss_pred chhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHH
Q 011959 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129 (474)
Q Consensus 50 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~ 129 (474)
..++++++++.++++..... ..|+++++++|+|+||.||++||||.+|+++.++||+||+|++|+.++++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~ 106 (439)
T 2oat_A 37 PPTSDDIFEREYKYGAHNYH----------PLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVD 106 (439)
T ss_dssp CCCHHHHHHHHHHHBCCCCC----------CCSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcccccC----------CCCeeEEeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHH
Confidence 44577888888777654321 14889999999999999999999999999989999999999999999998
Q ss_pred hcCCC--CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhh--------cCCcEEEEEeCCCCCCchhHH
Q 011959 130 KGTSF--GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFL 199 (474)
Q Consensus 130 ~~~~~--~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~--------~~~~~ii~~~~~yhg~~~~~~ 199 (474)
+...+ .++.+...+|++++++++ +.++++|++||+||++.|+++++.+ .++++||+++++|||++..++
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~la~~~-g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~ 185 (439)
T 2oat_A 107 KLTLTSRAFYNNVLGEYEEYITKLF-NYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAI 185 (439)
T ss_dssp TCSCCCTTSEESSHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHH
T ss_pred hcCcccCccCCHHHHHHHHHHHHhc-CCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHh
Confidence 75322 245667789999999888 5789999999999999999998754 245899999999999988887
Q ss_pred HhcCCCCccCCC-CCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHH
Q 011959 200 VKAGSGVATLGL-PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE 278 (474)
Q Consensus 200 ~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~ 278 (474)
..++.......+ |. ..++..+|++|+++|++.++. +++++|++||+++++|.+.++++++++|+++|++
T Consensus 186 ~~~g~~~~~~~~~p~--------~~~v~~~~~~d~~~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~ 255 (439)
T 2oat_A 186 SSSTDPTSYDGFGPF--------MPGFDIIPYNDLPALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTR 255 (439)
T ss_dssp TTCCCHHHHTTSCSC--------CTTEEEECSSCHHHHHHHTTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH
T ss_pred hcCCChhcccCCCCC--------CCCeEEeCCCCHHHHHHHhCC--CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 766532211111 11 124678889999999999962 4789999999999999999899999999999999
Q ss_pred hCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHH
Q 011959 279 NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 356 (474)
Q Consensus 279 ~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aa 356 (474)
||++||+||+|+|| ++|.+++++++++.||++||||++++| +|+||+++++++++.+. ...+.+||++||+++++
T Consensus 256 ~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~t~sK~l~~G~~~~G~v~~~~~~~~~l~---~~~~~~t~~~~~~~~aa 332 (439)
T 2oat_A 256 HQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIK---PGEHGSTYGGNPLGCRV 332 (439)
T ss_dssp TTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSC---TTSSCCSSTTCHHHHHH
T ss_pred cCCEEEEeccccCCccCCcchhHHHhCCCCcEEEecccccCCCCCeEEEEECHHHHhccC---CCCcccCCCcCHHHHHH
Confidence 99999999999999 989888888999999999999999999 89999999999998876 34467799999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH
Q 011959 357 GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 436 (474)
Q Consensus 357 a~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 436 (474)
+.++|+.++++++.++++++++++++.|+++ .++.+..+++.|+++++++.... . ....++.+.|++
T Consensus 333 a~aal~~~~~~~~~~~~~~~~~~l~~~L~~l--~~~~~~~~~~~g~~~~v~l~~~~--~---------~~~~~l~~~l~~ 399 (439)
T 2oat_A 333 AIAALEVLEEENLAENADKLGIILRNELMKL--PSDVVTAVRGKGLLNAIVIKETK--D---------WDAWKVCLRLRD 399 (439)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHTTS--CTTTEEEEEEETTEEEEEECCCS--S---------CCHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh--cCCCcEEEEeeeeEEEEEEecCc--c---------HHHHHHHHHHHH
Confidence 9999998877889999999999999999876 35566678899999999885321 0 012578889999
Q ss_pred CCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHhhC
Q 011959 437 EGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 437 ~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+||++.+.+...+|+ ++.+|++++++++++|+++++++
T Consensus 400 ~Gv~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 439 (439)
T 2oat_A 400 NGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILSF 439 (439)
T ss_dssp TTEECCBSSSSEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCeEEecCCCCEEEEECccCCCHHHHHHHHHHHHHHHHhC
Confidence 999999876667777 57899999999999999998764
No 24
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=100.00 E-value=1.5e-56 Score=456.29 Aligned_cols=395 Identities=21% Similarity=0.299 Sum_probs=333.1
Q ss_pred HHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC
Q 011959 53 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT 132 (474)
Q Consensus 53 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~ 132 (474)
.+++++++++++++++.++ +|+++++++|+|+||.||++||||.++++++++||+||+|++++.+++++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~ 76 (439)
T 3dxv_A 6 KALYDRDGAAIGNLQKLRF---------FPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPA 76 (439)
T ss_dssp CCHHHHHHHHBCGGGCCCS---------SCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHhccCccCCC---------CCceEEEeeeCEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcc
Confidence 4678899999998877542 4899999999999999999999999999999999999999999999998864
Q ss_pred CC---CCCCHHHHHHHHHHHhhCC-CC-CeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCC-
Q 011959 133 SF---GAPCLLENVLAEMVISAVP-SI-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV- 206 (474)
Q Consensus 133 ~~---~~~~~~~~~la~~l~~~~~-~~-~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~- 206 (474)
.+ .++.+...+|+++|+++++ +. ++++|++||++|++.++++++.++++++||+++++|||.+..++..++...
T Consensus 77 ~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 156 (439)
T 3dxv_A 77 GATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQ 156 (439)
T ss_dssp CSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC------
T ss_pred CccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCch
Confidence 33 3468899999999999997 55 799999999999999999988888999999999999999998887766532
Q ss_pred -ccCCC-CCCCCCCCCCCCceEEccCC----------CHHHHHHHHh-cCCCCeEEEEEccccCCCCcccCCHHHHHHHH
Q 011959 207 -ATLGL-PDSPGVPKGATYETLTAPFN----------DVSALENLFE-NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 273 (474)
Q Consensus 207 -~~~~~-~~~~g~~~~~~~~~~~~~~~----------d~~~le~~l~-~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~ 273 (474)
....+ +.. ..+..+|++ |+++|+++++ .+++++++|++||+++++|.+.++++|+++|+
T Consensus 157 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~ 228 (439)
T 3dxv_A 157 ADAAKADGLI--------LLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFA 228 (439)
T ss_dssp -------CEE--------EECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHH
T ss_pred hhccccCCCC--------CCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHH
Confidence 11110 100 112333444 6899999994 44568999999999999999999999999999
Q ss_pred HHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChH
Q 011959 274 RITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 352 (474)
Q Consensus 274 ~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~ 352 (474)
++|++||++||+||+|+|| ++|.++..+++++.||++||||++++|+|+||+++++++++.+.+ ..+.+|+ +|++
T Consensus 229 ~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~s~sK~~~~G~riG~~~~~~~~~~~~~~---~~~~~t~-~~~~ 304 (439)
T 3dxv_A 229 DICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASA---FAMQTLH-GNPI 304 (439)
T ss_dssp HHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEEEECGGGGTTSCCEEEEEEHHHHTSCSS---SSCCTTT-TCHH
T ss_pred HHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEEEEcchhcCCcceEEEEECHHHHhhhcC---CCcCCCc-ccHH
Confidence 9999999999999999999 888888889999999999999999999999999999999998873 3467788 9999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHH
Q 011959 353 AMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 432 (474)
Q Consensus 353 ~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (474)
++++++++|+.++++++.++++++++++++.|+++...++....+++.|+|+++++..... ...++......+.+
T Consensus 305 ~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 379 (439)
T 3dxv_A 305 SAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQ-----SREPARAETAKLIY 379 (439)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETT-----TTEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCcc-----ccCCCHHHHHHHHH
Confidence 9999999999887788999999999999999999888888888899999999999864321 11234455678899
Q ss_pred HHHHCCeEecccCC--cceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 433 GMLEEGVYFAPSQF--EAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 433 ~l~~~Gv~v~~~~~--~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.|+++||++.+++. ..+|+ ++.+|++++++++++|++++++
T Consensus 380 ~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 424 (439)
T 3dxv_A 380 RAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSE 424 (439)
T ss_dssp HHHHHTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCcEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999998864 56677 5788999999999999999875
No 25
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=100.00 E-value=3.5e-55 Score=445.30 Aligned_cols=408 Identities=22% Similarity=0.301 Sum_probs=328.5
Q ss_pred hhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHh
Q 011959 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130 (474)
Q Consensus 51 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 130 (474)
.++++++++++++++.+... + .|+++.+++|+++||.||++||||.+++++.++||+||+|++|+.+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~ 74 (433)
T 1zod_A 4 NDDATFWRNARHHLVRYGGT----F-----EPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGK 74 (433)
T ss_dssp TTCHHHHHHHHHHCCCCSSC----C-----CSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhhcccccc----c-----CCceEEEeecCEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHh
Confidence 45688899988888754321 1 38889999999999999999999999999899999999999999999987
Q ss_pred cC--CCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCc
Q 011959 131 GT--SFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVA 207 (474)
Q Consensus 131 ~~--~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~ 207 (474)
+. ..+++.+...+|+++++++++ +.++|+|++||+||++.++++++.++++++||+++++|||.+..++..++....
T Consensus 75 ~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 154 (433)
T 1zod_A 75 LDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGR 154 (433)
T ss_dssp CCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCC
T ss_pred CcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccc
Confidence 52 245678889999999999997 678999999999999999998877788889999999999999988877654321
Q ss_pred cCCCCCCCCCCCCCCCceEEccCC---------CHHHHHHHHhcC-CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH
Q 011959 208 TLGLPDSPGVPKGATYETLTAPFN---------DVSALENLFENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277 (474)
Q Consensus 208 ~~~~~~~~g~~~~~~~~~~~~~~~---------d~~~le~~l~~~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~ 277 (474)
....+...++........+..+|+ |+++|++.++++ ++++++|++||+++++|.+.++++|+++|+++|+
T Consensus 155 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~ 234 (433)
T 1zod_A 155 KGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCE 234 (433)
T ss_dssp SSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHH
T ss_pred cccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH
Confidence 110011112100000001112344 389999988752 2478999999999999988889999999999999
Q ss_pred HhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHH
Q 011959 278 ENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 356 (474)
Q Consensus 278 ~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aa 356 (474)
+||++||+||+|+|| ++|..+..+++++.||++||||++++|+|+||+++++++++.+... ...+.+|+++|++++++
T Consensus 235 ~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~~G~~ig~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~~a 313 (433)
T 1zod_A 235 ARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHEL-GYLFYTTHVSDPLPAAV 313 (433)
T ss_dssp HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTTSSCEEEEECHHHHHHHHHT-TCCCCCTTTTCHHHHHH
T ss_pred HhCCEEEEeccccCCCcCchHhHHhhcCCCCCEEEecccccCCCCeeEEEEhHHHHHhhccC-CCCCCCCCCcCHHHHHH
Confidence 999999999999999 8887777788899999999999999999999999999999888642 23345789999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH
Q 011959 357 GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE 436 (474)
Q Consensus 357 a~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 436 (474)
+.++|+.++++++.+++++++++++++|+++...++.+..+++.|+|+++++..... ...++.....++.+.|++
T Consensus 314 ~~aal~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~g~~~~i~~~~~~~-----~~~~~~~~~~~~~~~l~~ 388 (433)
T 1zod_A 314 GLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRR-----TKEPADGLGAKITRECMN 388 (433)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEEEETT-----TTEECTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCcc-----ccCCChHHHHHHHHHHHH
Confidence 999999887788999999999999999998766677777788999999998864210 001112234678889999
Q ss_pred CCeEecccCC----cceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 437 EGVYFAPSQF----EAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 437 ~Gv~v~~~~~----~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+||++.+++. ..+|+ ++.+|++++++++++|++++++
T Consensus 389 ~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~ 431 (433)
T 1zod_A 389 LGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 431 (433)
T ss_dssp TTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 9999998752 45777 5689999999999999999875
No 26
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=100.00 E-value=1.2e-55 Score=452.57 Aligned_cols=394 Identities=17% Similarity=0.232 Sum_probs=311.1
Q ss_pred CchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHH
Q 011959 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETM 128 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~ 128 (474)
..+++++++++++++++.. ..+ .|+++++++|+|+||.|||+||||++|++++++||+||+|++|+.+++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~ 92 (472)
T 1ohv_A 23 PGPRSRELMKQLNIIQNAE---AVH-------FFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQ 92 (472)
T ss_dssp SCHHHHHHHHHHHHHSCCT---TCC-------CCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGG
T ss_pred CCccHHHHHHHHHhhhccc---ccc-------CCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHH
Confidence 3457888999999887542 111 366789999999999999999999999999999999999999999986
Q ss_pred Hh-----cCCCCC--CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh-----------c----------
Q 011959 129 KK-----GTSFGA--PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-----------T---------- 179 (474)
Q Consensus 129 ~~-----~~~~~~--~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~-----------~---------- 179 (474)
.. ...++. ..+++.+|+++|++.+| +.++|+|+|||+|||+.|+++++.+ |
T Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~ 172 (472)
T 1ohv_A 93 NVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMIN 172 (472)
T ss_dssp GHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTT
T ss_pred hhcccccccccccccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCccccccccccccccc
Confidence 43 122332 35778888888888876 6889999999999999999999744 1
Q ss_pred ---C--CcEEEEEeCCCCCCchhHHHhcCCCCc-cCCCCCCC----CCCCCCCCceEEccCC------CHHHHHHHHhcC
Q 011959 180 ---G--RERIIKFEGCYHGHADPFLVKAGSGVA-TLGLPDSP----GVPKGATYETLTAPFN------DVSALENLFENN 243 (474)
Q Consensus 180 ---~--~~~ii~~~~~yhg~~~~~~~~~g~~~~-~~~~~~~~----g~~~~~~~~~~~~~~~------d~~~le~~l~~~ 243 (474)
+ +++||+++++|||++..++..++.... ....+... .++.........+++| |+++|+++|+++
T Consensus 173 ~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~ 252 (472)
T 1ohv_A 173 QAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKY 252 (472)
T ss_dssp CTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhc
Confidence 3 589999999999999999988875422 11111110 0110000000011233 688999998753
Q ss_pred CC---CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCC--Cceeehhhh-c
Q 011959 244 KG---EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVT--PDLTTLGKI-I 316 (474)
Q Consensus 244 ~~---~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~--pdi~t~sK~-l 316 (474)
.+ ++++|++||+++++|.+.|+++|+++|+++|++||++||+||||+|| ++|.+++.+++|+. ||++||||+ +
T Consensus 253 ~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~l 332 (472)
T 1ohv_A 253 RKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMM 332 (472)
T ss_dssp HHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGGS
T ss_pred CCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEccccc
Confidence 22 78999999999999999999999999999999999999999999999 88887888899987 999999999 6
Q ss_pred CCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC-Cee
Q 011959 317 GGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG-HAI 395 (474)
Q Consensus 317 ~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~ 395 (474)
+||+ ++ ++++. .+ ....+++|+++||+++++++++|+.++++++.+++++++++++++|+++..+++ .+.
T Consensus 333 ~GG~----~~-~~~~~-~~---~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~ 403 (472)
T 1ohv_A 333 TGGF----FH-KEEFR-PN---APYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFIS 403 (472)
T ss_dssp SEEE----EE-CGGGS-CS---SSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCE
T ss_pred cCCc----cC-chhhc-cc---ccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEE
Confidence 7544 34 65552 12 255678899999999999999999887788999999999999999998766666 466
Q ss_pred EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 396 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+++.|+|+++++.+ ......+.+.|+++||++.+.+...+|+ ++.+|+++|++++++|++++++
T Consensus 404 ~~~~~g~~~~~~~~~-------------~~~~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 404 RVRGRGTFCSFDTPD-------------ESIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp EEEEETTEEEEECSS-------------HHHHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred eecCCceEEEEEeCC-------------hhHHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 788999999987632 1234678899999999999876567777 7899999999999999999876
Q ss_pred C
Q 011959 474 I 474 (474)
Q Consensus 474 ~ 474 (474)
+
T Consensus 471 ~ 471 (472)
T 1ohv_A 471 F 471 (472)
T ss_dssp C
T ss_pred c
Confidence 4
No 27
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=100.00 E-value=5.8e-55 Score=438.34 Aligned_cols=368 Identities=24% Similarity=0.282 Sum_probs=321.4
Q ss_pred CCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCCCCe
Q 011959 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEM 157 (474)
Q Consensus 80 ~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~~~ 157 (474)
..|+++++++|+++||.||++||||.++++++++||+||+|++|+.+++++... ..++.+...+++++++++++ .++
T Consensus 17 ~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~~~ 95 (395)
T 3nx3_A 17 RFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASA-LER 95 (395)
T ss_dssp SCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHHT-CSE
T ss_pred CCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC-CCe
Confidence 358999999999999999999999999999999999999999999999987532 22568889999999999984 789
Q ss_pred EEEeCCHHHHHHHHHHHhHhh-----cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCC
Q 011959 158 VRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~-----~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d 232 (474)
++|++||+||++.|+++++.. +++++||+++++|||.+..++..++.......+. ....++..++++|
T Consensus 96 v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d 168 (395)
T 3nx3_A 96 VFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFK-------PLISGVKFAKYND 168 (395)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGC-------SCCSCEEEECTTC
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccC-------CCCCCcEEeCCCC
Confidence 999999999999999998877 6789999999999999988887766433221110 1123477889999
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceee
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t 311 (474)
+++|++.++ +++++|++||+++++|.+.++++++++|+++|++||++||+||+|+|| ++|..+..+++++.||++|
T Consensus 169 ~~~l~~~l~---~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t 245 (395)
T 3nx3_A 169 ISSVEKLVN---EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMT 245 (395)
T ss_dssp HHHHHTTCC---TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE
T ss_pred HHHHHHhcc---CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEE
Confidence 999999886 478999999999999999999999999999999999999999999999 8888888899999999999
Q ss_pred hhhhcCCCcceEEEEecHHH-HHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 312 LGKIIGGGLPVGAYGGRRDI-MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 312 ~sK~l~~G~~iG~~~~~~~i-~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
|||++++|+|+|++++++++ ++.+. +..+.+|+++|+++++++.++|+.++++++.++++++.+++++.|.++..+
T Consensus 246 ~sK~~~~G~~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (395)
T 3nx3_A 246 SAKALGCGLSVGAFVINQKVASNSLE---AGDHGSTYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINE 322 (395)
T ss_dssp ECGGGTTTSCCEEEEECHHHHHHHSC---TTCCSSCBSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccCCCceEEEEEchhhhhhhcC---CcccCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999 88886 345678999999999999999998877889999999999999999998877
Q ss_pred cCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHH
Q 011959 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAE 468 (474)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~ 468 (474)
++....+++.|+++++++.+.. ....+.+.|+++||++.+++...+|+ ++.+|++++++++++|+
T Consensus 323 ~~~~~~~~~~g~~~~~~~~~~~-------------~~~~~~~~l~~~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l~ 389 (395)
T 3nx3_A 323 FDFCKKRKGLGFMQGLSLDKSV-------------KVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLR 389 (395)
T ss_dssp CTTEEEEEEETTEEEEEECTTS-------------CHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCCeEEEEeEEEEEEEEeCCcc-------------hHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 8878888999999999885421 12578889999999999987777887 57889999999999999
Q ss_pred HHHhhC
Q 011959 469 KVLRQI 474 (474)
Q Consensus 469 ~~~~~~ 474 (474)
++++++
T Consensus 390 ~~l~~~ 395 (395)
T 3nx3_A 390 KALKSF 395 (395)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 998763
No 28
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=100.00 E-value=1.5e-54 Score=440.40 Aligned_cols=382 Identities=22% Similarity=0.280 Sum_probs=302.3
Q ss_pred CCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHhhCC-CC
Q 011959 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SI 155 (474)
Q Consensus 80 ~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~-~~ 155 (474)
..|+++++++|+|+||.||++||||.++++++++||+||+|++|+.+++++... ..++.+...+|+++++++++ +.
T Consensus 10 ~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~ 89 (430)
T 3i4j_A 10 KPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPT 89 (430)
T ss_dssp SCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCTT
T ss_pred CCCceEEeeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCC
Confidence 358999999999999999999999999999999999999999999999988542 24678899999999999997 57
Q ss_pred CeEEEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEc
Q 011959 156 EMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTA 228 (474)
Q Consensus 156 ~~v~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~ 228 (474)
++|+|+|||+||++.++++++.+ +++++||+++++|||++..++..++........ +..+ ..++..+
T Consensus 90 ~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 163 (430)
T 3i4j_A 90 FRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMR------PEAWPKL 163 (430)
T ss_dssp CEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------C------GGGSCEE
T ss_pred CEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCC------CCCceEc
Confidence 89999999999999999998777 788999999999999988877766653322111 1111 0023444
Q ss_pred cCC--------CHHHHHHHHhcCC-CCeEEEEEccccC-CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC
Q 011959 229 PFN--------DVSALENLFENNK-GEIAAIILEPVVG-NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG 297 (474)
Q Consensus 229 ~~~--------d~~~le~~l~~~~-~~~a~vi~ep~~~-~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~ 297 (474)
|++ |+++|++++++.. +++++|++||++| ++|.+.++++|+++|+++|++||++||+||+|+|| ++|.+
T Consensus 164 ~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~ 243 (430)
T 3i4j_A 164 PKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSP 243 (430)
T ss_dssp CCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred CCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccch
Confidence 544 4589999987532 5789999999999 99999999999999999999999999999999999 99988
Q ss_pred cccccc-CCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCC-CCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHH
Q 011959 298 GAQEYF-GVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 374 (474)
Q Consensus 298 ~~~~~~-g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~-~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 374 (474)
++.+++ ++.||++||||++++| +|+||+++++++++.+.+. +.+.+.+|+++|++++++++++|+.++++++.++++
T Consensus 244 ~~~~~~~~~~~di~t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 323 (430)
T 3i4j_A 244 LALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAK 323 (430)
T ss_dssp SGGGGTTTCCCSEEEECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hhhhhhcCCCCcEEEEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHH
Confidence 888999 9999999999999999 9999999999999988742 124567899999999999999999887788999999
Q ss_pred HHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccc--hHHHHHHHHHHHHCCeEeccc-------C
Q 011959 375 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSE--TTKFARFYRGMLEEGVYFAPS-------Q 445 (474)
Q Consensus 375 ~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~Gv~v~~~-------~ 445 (474)
++++++++.|+++..+++.+..+++.|+|+++++.+.... .+. .....++.+.|+++||++.+. +
T Consensus 324 ~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~ 397 (430)
T 3i4j_A 324 ERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATG------QAFETPGIASRIGAAALKRGLITYPGSGAEPNGR 397 (430)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEEC------------------CHHHHHHHHHHTTEECC----------
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEecccccc------CCCccHHHHHHHHHHHHhCCCEEEecccccCCCC
Confidence 9999999999998878888888999999999998532100 000 112357889999999999987 2
Q ss_pred CcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 446 FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 446 ~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
...+|++ +.+|++++++++++|++++++
T Consensus 398 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 398 GDHLLLGPPLSITAAEVDGLLALLAGALED 427 (430)
T ss_dssp -CEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 3456764 568999999999999999875
No 29
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=100.00 E-value=6.1e-54 Score=434.32 Aligned_cols=367 Identities=26% Similarity=0.364 Sum_probs=311.0
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHhhCCCCCeE
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMV 158 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~~~~~v 158 (474)
.|+++++++|+++||.||++||||.++++++++||+||+|++++.+++++.... .++.+...+|+++|++++ +.+++
T Consensus 39 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~v 117 (420)
T 2pb2_A 39 ADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDAT-FAERV 117 (420)
T ss_dssp CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSCCHHHHHHHHHHHHHS-SCSEE
T ss_pred CCceEEeeecCEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhC-CCCeE
Confidence 488999999999999999999999999999999999999999999999875322 256788999999999998 47899
Q ss_pred EEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEccCC
Q 011959 159 RFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFN 231 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~ 231 (474)
+|++||+||++.++++++.+ +++++||+++++|||.+..++..+|......++ |. ..++..+|++
T Consensus 118 ~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~--------~~~~~~~~~~ 189 (420)
T 2pb2_A 118 LFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPK--------PADIIHVPFN 189 (420)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSC--------CSCEEEECTT
T ss_pred EEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCC--------CCCeEEecCC
Confidence 99999999999999988765 577799999999999998888776653221111 11 1236778888
Q ss_pred CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee
Q 011959 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT 310 (474)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~ 310 (474)
|+++|++.++ +++++|++||++|++|.+.++.+++++|+++|++||++||+||+|+|| ++|.+++.+++++.||++
T Consensus 190 d~~~le~~i~---~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii 266 (420)
T 2pb2_A 190 DLHAVKAVMD---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL 266 (420)
T ss_dssp CHHHHHHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE
T ss_pred CHHHHHHHhc---cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE
Confidence 9999999986 378999999999988888888899999999999999999999999999 888877778889999999
Q ss_pred ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 311 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 311 t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
||||++++|+|+||+++++++++.+.. ..+..|+++|+++++++.++|+.++++++.++++++++++++.|+++...
T Consensus 267 t~sK~l~~G~~iG~~~~~~~l~~~l~~---~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 343 (420)
T 2pb2_A 267 TSAKALGGGFPVSAMLTTQEIASAFHV---GSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQ 343 (420)
T ss_dssp EECGGGGTTSCCEEEEECHHHHTTCC-------CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccccCCCceEEEEEhHHHHHhhcC---CCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998887763 34667889999999999999999877788999999999999999887555
Q ss_pred cCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEe--cCCcHHHHHHHHHHHH
Q 011959 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAE 468 (474)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~ 468 (474)
++.+..+++.|+++++++.... .....++.+.|+++||++.+++.+.+|++ +.+|++++++++++|+
T Consensus 344 ~~~~~~~~~~g~~~~v~~~~~~-----------~~~~~~l~~~l~~~Gi~v~~~~~~~iRl~~~~~~t~eei~~~~~~l~ 412 (420)
T 2pb2_A 344 FDIFSDIRGMGLLIGAELKPKY-----------KGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFA 412 (420)
T ss_dssp HCCEEEEEEETTEEEEEECGGG-----------TTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCCeEEEEecceEEEEEECCCc-----------hHHHHHHHHHHHHCCCEEEeCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 6766678899999999885320 00125788899999999998876677875 7899999999999999
Q ss_pred HHHhh
Q 011959 469 KVLRQ 473 (474)
Q Consensus 469 ~~~~~ 473 (474)
+++++
T Consensus 413 ~~l~~ 417 (420)
T 2pb2_A 413 QAVGK 417 (420)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 30
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=100.00 E-value=4.7e-54 Score=438.67 Aligned_cols=364 Identities=21% Similarity=0.279 Sum_probs=306.8
Q ss_pred EEeeccCEEEE-cCCCEEEeccCChhhccCCCCCHHHH-H-HHHH---HHHhcCCCC--CCCHHHHHHHHHHHhhCC--C
Q 011959 85 FDSVKGSHMWD-IDGNEYIDYVGSWGPAIIGHADDQVL-A-ALGE---TMKKGTSFG--APCLLENVLAEMVISAVP--S 154 (474)
Q Consensus 85 ~~~~~G~~~~d-~dG~~~iD~~~~~~~~~lG~~~p~v~-~-a~~~---~~~~~~~~~--~~~~~~~~la~~l~~~~~--~ 154 (474)
+.+++|+|+|| .||++||||.++++++++||+||+|+ + |+.+ +++++..++ ++.+...+++++|+++++ +
T Consensus 39 ~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~la~~~~~~~ 118 (449)
T 2cjg_A 39 LTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPA 118 (449)
T ss_dssp TTTCBBTEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCTTTCCCHHHHHHHHHHHHHHCCTT
T ss_pred EeeeeeCEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHHhcCCCC
Confidence 46999999999 99999999999999999999999999 9 9999 888764333 678889999999999985 6
Q ss_pred CCeEEEeCCHHHHHHHHHHHhHhhcC------------CcEEEEEeCCCCCCchhHHHhcCC-CCccCCC-CCCCCCCCC
Q 011959 155 IEMVRFVNSGTEACMGVLRLARAFTG------------RERIIKFEGCYHGHADPFLVKAGS-GVATLGL-PDSPGVPKG 220 (474)
Q Consensus 155 ~~~v~~~~sGseA~~~al~~ar~~~~------------~~~ii~~~~~yhg~~~~~~~~~g~-~~~~~~~-~~~~g~~~~ 220 (474)
.++|+|++||+||++.|+++++.+++ +++||+++++|||++..++..++. ......+ |.
T Consensus 119 ~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~------- 191 (449)
T 2cjg_A 119 LPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKF------- 191 (449)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCC-------
T ss_pred CCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCC-------
Confidence 78999999999999999999887765 789999999999999988877764 1111111 11
Q ss_pred CCCceEEccCCC--H-------------HHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 011959 221 ATYETLTAPFND--V-------------SALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 285 (474)
Q Consensus 221 ~~~~~~~~~~~d--~-------------~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~ 285 (474)
..++..+|++| . ++|+++++++++++++|++||++|++|.+.++++|+++|+++|++||++||+
T Consensus 192 -~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~ 270 (449)
T 2cjg_A 192 -DWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIF 270 (449)
T ss_dssp -CCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEE
T ss_pred -CCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEE
Confidence 12356666666 3 3488888755468999999999999999999999999999999999999999
Q ss_pred eccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcC--CCCcccccCCCCChHHHHHHHHHHH
Q 011959 286 DEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLK 362 (474)
Q Consensus 286 DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~--~~~~~~~~t~~~~~~~~aaa~aal~ 362 (474)
||+|+|| ++|.+++.+++++.||++||||++ |+||+++++++++.+.+ .....+.+|+++|+++++++.++|+
T Consensus 271 DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l----~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~ 346 (449)
T 2cjg_A 271 DEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT----QVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILE 346 (449)
T ss_dssp ECTTTTTTTTSSSSTHHHHTCCCSEEEECGGG----SSEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHH
T ss_pred eccccCCCccCcceeecccCCCceEEEecCcc----cEEEEEECHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHH
Confidence 9999999 988888888899999999999999 89999999999886432 1134566899999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHhhhcCC-eeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEe
Q 011959 363 RLKEPGTYEYLNKITGELTQGIIDAGKKAGH-AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF 441 (474)
Q Consensus 363 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v 441 (474)
.++++++.+++++++++++++|+++...++. +..+++.|+|+++++.. ......+.+.|+++||++
T Consensus 347 ~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~~~-------------~~~~~~~~~~l~~~Gv~v 413 (449)
T 2cjg_A 347 VIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSLPT-------------TADRDELIRQLWQRAVIV 413 (449)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEECSS-------------HHHHHHHHHHHHHTTEEC
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEECC-------------hHHHHHHHHHHHHCCeEE
Confidence 8877789999999999999999988666775 67788999999987742 112357889999999999
Q ss_pred cccCCcceEE--ecCCcHHHHHHHHHHHHHHHhh
Q 011959 442 APSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 442 ~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+++...+|+ ++.+|+++|++++++|++++++
T Consensus 414 ~~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 414 LPAGADTVRFRPPLTVSTAEIDAAIAAVRSALPV 447 (449)
T ss_dssp EEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 9987677787 6789999999999999999875
No 31
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=100.00 E-value=1.3e-51 Score=421.01 Aligned_cols=378 Identities=22% Similarity=0.294 Sum_probs=308.8
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC--CC-CCCCHHHHHHHHHHHhhCC-CCC
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SF-GAPCLLENVLAEMVISAVP-SIE 156 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~-~~~~~~~~~la~~l~~~~~-~~~ 156 (474)
.|+++.+++|+++||.||++|||+.++++++++||+||+|++|+.+++++.. .+ +++.+...+|+++++++++ +.+
T Consensus 32 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~ 111 (449)
T 3a8u_X 32 DPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLN 111 (449)
T ss_dssp SCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTEE
T ss_pred CCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 3889999999999999999999999999999999999999999999997742 23 5678889999999999997 678
Q ss_pred eEEEeCCHHHHHHHHHHHhHhhc------CCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEcc
Q 011959 157 MVRFVNSGTEACMGVLRLARAFT------GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAP 229 (474)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~------~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~ 229 (474)
+|+|++||++|++.|+++++.++ ++++||+++++|||.+...+..++.......+ |...++ ..+.+|
T Consensus 112 ~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~------~~v~~~ 185 (449)
T 3a8u_X 112 HVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDV------DHLPHT 185 (449)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSE------EEECCC
T ss_pred EEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCC------eEecCC
Confidence 99999999999999999887655 67899999999999988887776642211110 111111 111111
Q ss_pred ----CC----C--------HHHHHHHHhcCC-CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011959 230 ----FN----D--------VSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (474)
Q Consensus 230 ----~~----d--------~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (474)
++ | +++|++.+++++ +++++|++||+++++|.+.++++|+++|+++|++||++||+||+|+||
T Consensus 186 ~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~ 265 (449)
T 3a8u_X 186 LLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGF 265 (449)
T ss_dssp CCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred ccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Confidence 11 4 899999987532 478999999999999999999999999999999999999999999999
Q ss_pred -ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCC------CCcccccCCCCChHHHHHHHHHHHHh
Q 011959 293 -RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA------GPMYQAGTLSGNPLAMTAGIHTLKRL 364 (474)
Q Consensus 293 -r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~------~~~~~~~t~~~~~~~~aaa~aal~~~ 364 (474)
++|..+..+++++.||++|+||+|++| +|+|++++++++++.+... ....+.+|+++|+++++++.++|+.+
T Consensus 266 g~~g~~~~~~~~~~~~di~s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~ 345 (449)
T 3a8u_X 266 GRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLL 345 (449)
T ss_dssp TTTSSSSHHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhcCCCCCEEEEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHH
Confidence 888777778889999999999999988 9999999999999988742 12245678999999999999999988
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc
Q 011959 365 KEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS 444 (474)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~ 444 (474)
+++++.++++++++++++.|+++ ..++....+++.|+++++++...... .......+.+.|+++||++.++
T Consensus 346 ~~~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~~~~~g~~~~i~~~~~~~~--------~~~~~~~~~~~l~~~Gv~v~~~ 416 (449)
T 3a8u_X 346 QKENLVQSVAEVAPHFEKALHGI-KGAKNVIDIRNFGLAGAIQIAPRDGD--------AIVRPFEAGMALWKAGFYVRFG 416 (449)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHTT-TTSTTEEEEEEETTEEEEEECCBTTB--------SSHHHHHHHHHHHHHTEECEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHH-hcCCCeEEEeeeEEEEEEEEecCccc--------ccccHHHHHHHHHHCCcEEecC
Confidence 77789999999999999999873 34666667889999999998542100 0001135788888999999987
Q ss_pred CCcceEEe--cCCcHHHHHHHHHHHHHHHhhC
Q 011959 445 QFEAGFTS--LAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 445 ~~~~~~~~--~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+ ..+|++ +.+|++++++++++|+++++++
T Consensus 417 g-~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 417 G-DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp T-TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred C-CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 6 678886 7899999999999999998753
No 32
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.5e-50 Score=409.52 Aligned_cols=379 Identities=26% Similarity=0.384 Sum_probs=303.0
Q ss_pred HHHHHHHHhhh-CCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCC-CHHHHHHHHHHHHh
Q 011959 53 SEEAFNVAKEL-MPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHA-DDQVLAALGETMKK 130 (474)
Q Consensus 53 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~-~p~v~~a~~~~~~~ 130 (474)
++++.++..++ +..+... | ..|+++.+++|+++||.+|++|||+.++.+++++||+ ||+|++|+.+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~ 74 (419)
T 2eo5_A 3 SRKIIEESDIYLATSTRDP----E----LFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQK 74 (419)
T ss_dssp HHHHHHHHHHHSCCCCCSS----C----CCCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTT
T ss_pred hHHHHHHHHhhhccccccc----c----CCCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhh
Confidence 45677776666 5443221 1 1488899999999999999999999999999999999 99999999999987
Q ss_pred cCCC---CCCCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCC
Q 011959 131 GTSF---GAPCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG 205 (474)
Q Consensus 131 ~~~~---~~~~~~~~~la~~l~~~~~-~-~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~ 205 (474)
...+ .++.+...+|+++++++++ + .++|+|++||+||++.++++++.++ +++||+++++|||.+...+..++..
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~-~~~vi~~~p~yh~~~~~~~~~~~~~ 153 (419)
T 2eo5_A 75 LAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTG-RKYIIAFLGGFHGRTFGSISLTASK 153 (419)
T ss_dssp SCCCSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTS-CCEEEEETTCCCCSSHHHHHHCCSC
T ss_pred CccccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhh-CCcEEEECCCcCCCCHhhHhhcCCc
Confidence 5332 3678889999999999997 3 5799999999999999999887666 7899999999999999888776642
Q ss_pred -CccCCC-CCCCCCCCCCCCceEEccCC---------------------CHHHHH-HHHhcCC--CCeEEEEEccccCCC
Q 011959 206 -VATLGL-PDSPGVPKGATYETLTAPFN---------------------DVSALE-NLFENNK--GEIAAIILEPVVGNS 259 (474)
Q Consensus 206 -~~~~~~-~~~~g~~~~~~~~~~~~~~~---------------------d~~~le-~~l~~~~--~~~a~vi~ep~~~~~ 259 (474)
.....+ +. ...+..+|++ |+++|+ +.++++. +++++|++||+++++
T Consensus 154 ~~~~~~~~~~--------~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~t 225 (419)
T 2eo5_A 154 AVQRSIVGPF--------MPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEG 225 (419)
T ss_dssp GGGGCSSCCC--------CTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTT
T ss_pred cccccccCCC--------CCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCC
Confidence 111111 10 0123333332 367888 8887421 468999999998889
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcC
Q 011959 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP 337 (474)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~ 337 (474)
|.+.++++++++|+++|++||++||+||+|+|| ++|..+..+++++.||++||||++++| +|+||++++++++ .+ .
T Consensus 226 G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~~riG~~~~~~~~~-~~-~ 303 (419)
T 2eo5_A 226 GYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLD-FK-P 303 (419)
T ss_dssp TSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTSCCEEEEEEGGGC-CC--
T ss_pred CCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEecccccCCccceEEEEEchHhh-cC-C
Confidence 988889999999999999999999999999999 888777778889999999999999999 9999999999887 55 2
Q ss_pred CCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcc
Q 011959 338 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFE 417 (474)
Q Consensus 338 ~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~ 417 (474)
..+.+|+++|+++++++.++|+.+++ +.++++++++++++.|+++ ...+++.|+|+++++..
T Consensus 304 ---~~~~~t~~~n~~~~~aa~aal~~~~~--~~~~~~~~~~~l~~~L~~~------~~~~~~~g~~~~i~~~~------- 365 (419)
T 2eo5_A 304 ---GMHSNTFGGNALACAIGSKVIDIVKD--LLPHVNEIGKIFAEELQGL------ADDVRGIGLAWGLEYNE------- 365 (419)
T ss_dssp --------CCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTS------SSEEEEETTEEEEECSC-------
T ss_pred ---cccCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh------hhheEeeeEEEEEEEec-------
Confidence 23567999999999999999998764 8888889999998888654 34568889999887731
Q ss_pred cccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHHHHhhC
Q 011959 418 DAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+..... +.+.|+++||++.+.+...+|+ ++.+|++++++++++|+++++++
T Consensus 366 -----~~~~~~-~~~~l~~~Gv~v~~~~~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~ 418 (419)
T 2eo5_A 366 -----KKVRDR-IIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKKVIKVV 418 (419)
T ss_dssp -----HHHHHH-HHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred -----CccHHH-HHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 112235 8888999999999976667788 56889999999999999998763
No 33
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=100.00 E-value=6.7e-50 Score=405.41 Aligned_cols=398 Identities=28% Similarity=0.444 Sum_probs=321.2
Q ss_pred hHHHHHHHHhhhCCCCCCCccccccccCCCCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc
Q 011959 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG 131 (474)
Q Consensus 52 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~ 131 (474)
+++++.++.+++++.+.... +|+++.+++|+++||.+|++||||.++.++.++||++|+|++++.+++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~ 73 (426)
T 1sff_A 3 SNKELMQRRSQAIPRGVGQI---------HPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKL 73 (426)
T ss_dssp CHHHHHHHHHHHSCTTBCCS---------EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHhcCcccccc---------CCceEEecccCEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhC
Confidence 56788889899988766432 388999999999999999999999999888899999999999999998764
Q ss_pred CC---CCCCCHHHHHHHHHHHhhCCC-C-CeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCC
Q 011959 132 TS---FGAPCLLENVLAEMVISAVPS-I-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV 206 (474)
Q Consensus 132 ~~---~~~~~~~~~~la~~l~~~~~~-~-~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (474)
.. ..++.+...+|++.|++++++ . ++|+|++||++|++.++++++.++++++||+++++||+.....+...|...
T Consensus 74 ~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~~vi~~~p~y~~~~~~~~~~~g~~~ 153 (426)
T 1sff_A 74 SHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVN 153 (426)
T ss_dssp SCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCT
T ss_pred CCccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCchHhhhhcCCcc
Confidence 22 234678889999999999953 4 899999999999999999888888878999999999999887777665421
Q ss_pred -ccCCCCCCCCCCCCCCCceEEccC-----C-----CHHHHHHHHhc--CCCCeEEEEEccccCCCCcccCCHHHHHHHH
Q 011959 207 -ATLGLPDSPGVPKGATYETLTAPF-----N-----DVSALENLFEN--NKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 273 (474)
Q Consensus 207 -~~~~~~~~~g~~~~~~~~~~~~~~-----~-----d~~~le~~l~~--~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~ 273 (474)
....+ .+. ...+..+|+ + |+++|++.+++ +++++++|+++|+++|+|.+.++++++++|+
T Consensus 154 ~~~~~~--~~~-----~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~ 226 (426)
T 1sff_A 154 PYSAGM--GLM-----PGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLR 226 (426)
T ss_dssp TTTTTS--CCC-----CSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHH
T ss_pred cccccc--CCC-----CCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHH
Confidence 00000 000 001222332 2 68899998874 2247899999999888998889999999999
Q ss_pred HHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChH
Q 011959 274 RITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 352 (474)
Q Consensus 274 ~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~ 352 (474)
++|++||++||+||+|+|| +.|..+..+.+++.||++||||++++|+|+||+++++++++.+.. ..+..|++.|++
T Consensus 227 ~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~GlriG~~~~~~~~~~~l~~---~~~~~~~~~~~~ 303 (426)
T 1sff_A 227 ALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAP---GGLGGTYAGNPI 303 (426)
T ss_dssp HHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTSSCCEEEEEEHHHHTTSCT---TSBCCSSSSCHH
T ss_pred HHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEEEEcccccCCCceEEEEEcHHHHhhhcc---CCcCcCCCCCHH
Confidence 9999999999999999999 878767777888899999999999999999999999999888763 335678899999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHH
Q 011959 353 AMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 432 (474)
Q Consensus 353 ~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (474)
+++++.++|+.++++++.+++++++++++++|+++...++....+++.|+++++++.... ....|+.....++.+
T Consensus 304 ~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~l~~ 378 (426)
T 1sff_A 304 ACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIELFEDG-----DHNKPDAKLTAEIVA 378 (426)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEETTEEEEEEBGGG-----CTTSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEEEEEEEecCc-----cccCCChHHHHHHHH
Confidence 999999999988777899999999999999999876556666667788999999885311 001122334567889
Q ss_pred HHHHCCeEecccC--CcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 433 GMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 433 ~l~~~Gv~v~~~~--~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.|+++||++.++. ...+|++ +.++++++++++++|++++++
T Consensus 379 ~l~~~gi~v~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~ 423 (426)
T 1sff_A 379 RARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDE 423 (426)
T ss_dssp HHHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCcEEecCCCCCCEEEEECCccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999876 3567775 478999999999999998865
No 34
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=100.00 E-value=8.2e-50 Score=405.31 Aligned_cols=371 Identities=25% Similarity=0.339 Sum_probs=302.1
Q ss_pred CeE-EEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC---CCCCCHHHHHHHHHHHhhCC-CCC
Q 011959 82 PIV-FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS---FGAPCLLENVLAEMVISAVP-SIE 156 (474)
Q Consensus 82 p~~-~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~---~~~~~~~~~~la~~l~~~~~-~~~ 156 (474)
|++ +.+++|+++||.+|++|||+.++++++++||++|+|++|+.+++++... .+++.+...+++++++++++ +.+
T Consensus 25 ~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~ 104 (429)
T 1s0a_A 25 PVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLE 104 (429)
T ss_dssp CCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTCC
T ss_pred CceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCC
Confidence 555 9999999999999999999999999999999999999999999987432 24567788999999999997 788
Q ss_pred eEEEeCCHHHHHHHHHHHhHhhcC-----CcEEEEEeCCCCCCchhHHHhcCCCC-ccCCC-CCCCCCCCCCCCceEEcc
Q 011959 157 MVRFVNSGTEACMGVLRLARAFTG-----RERIIKFEGCYHGHADPFLVKAGSGV-ATLGL-PDSPGVPKGATYETLTAP 229 (474)
Q Consensus 157 ~v~~~~sGseA~~~al~~ar~~~~-----~~~ii~~~~~yhg~~~~~~~~~g~~~-~~~~~-~~~~g~~~~~~~~~~~~~ 229 (474)
+|+|++||+||++.++++++.+++ +++||+++++||++....+..++... ....+ +...++ ..+.++
T Consensus 105 ~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 178 (429)
T 1s0a_A 105 CVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPEN------LFAPAP 178 (429)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCC------EEECCC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCc------eEeCCC
Confidence 999999999999999998776654 78999999999999887776655321 00000 000110 112221
Q ss_pred ---------CCCHHHHHHHHhcCCCCeEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc
Q 011959 230 ---------FNDVSALENLFENNKGEIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG 298 (474)
Q Consensus 230 ---------~~d~~~le~~l~~~~~~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~ 298 (474)
.+|+++|++.++++++++++|++||+ +|++|.+.++++++++|+++|++||++||+||+|+|| ++|..+
T Consensus 179 ~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~ 258 (429)
T 1s0a_A 179 QSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF 258 (429)
T ss_dssp CSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred cccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHH
Confidence 24799999998754457899999999 8999998999999999999999999999999999999 888767
Q ss_pred cccccCCCCceeehhhhcCCC-cceEEEEecHHHHHhhcCC--CCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHH
Q 011959 299 AQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNK 375 (474)
Q Consensus 299 ~~~~~g~~pdi~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~--~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 375 (474)
..+++++.||++||||+|++| +|+||+++++++++.+... ....+.+|+++|+++++++.++|+.++++++.+++++
T Consensus 259 ~~~~~~~~~d~~t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~~ 338 (429)
T 1s0a_A 259 ACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVAD 338 (429)
T ss_dssp GGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhhhcCCCCCEEEecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 778889999999999999999 9999999999999888742 1123557899999999999999998877788899999
Q ss_pred HHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEe--c
Q 011959 376 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--L 453 (474)
Q Consensus 376 ~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~ 453 (474)
++++++++|+++.. ++....+++.|+++++++... . + ...+.+.|+++||++.+.+ ..+|++ +
T Consensus 339 ~~~~l~~~L~~l~~-~~~~~~~~~~g~~~~~~~~~~-~---------~---~~~l~~~l~~~Gi~v~~~~-~~iRis~~~ 403 (429)
T 1s0a_A 339 IEVQLREQLAPARD-AEMVADVRVLGAIGVVETTHP-V---------N---MAALQKFFVEQGVWIRPFG-KLIYLMPPY 403 (429)
T ss_dssp HHHHHHHHHGGGGG-CTTEEEEEEETTEEEEEESSC-B---------C---HHHHHHHHHHTTEECCCBT-TEEEECCCT
T ss_pred HHHHHHHHHHHHhc-CCCEEEEEEeeEEEEEEECCc-c---------c---HHHHHHHHHHCCCEEeccC-CEEEEECCC
Confidence 99999999987532 454556788899999887431 0 1 2467888899999999864 567876 7
Q ss_pred CCcHHHHHHHHHHHHHHHhh
Q 011959 454 AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 454 ~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+|++++++++++|++++++
T Consensus 404 ~~t~e~i~~~~~~l~~~~~~ 423 (429)
T 1s0a_A 404 IILPQQLQRLTAAVNRAVQD 423 (429)
T ss_dssp TCCHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 89999999999999998754
No 35
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=100.00 E-value=3.6e-50 Score=403.00 Aligned_cols=361 Identities=25% Similarity=0.362 Sum_probs=308.8
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHhhCCCCCeE
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMV 158 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~~~~~v 158 (474)
.|+++++++|+++||.||++||||.+++++.++||+||+|.+++.+++++.... .++.+...++++++++++ +.+++
T Consensus 18 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~v 96 (392)
T 3ruy_A 18 LPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLT-NKEMV 96 (392)
T ss_dssp CSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHH-TCSEE
T ss_pred CCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhc-CCCEE
Confidence 489999999999999999999999999999999999999999999999874321 245677889999999988 48899
Q ss_pred EEeCCHHHHHHHHHHHhHhh--------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC
Q 011959 159 RFVNSGTEACMGVLRLARAF--------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~--------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 230 (474)
+|++||++|++.++++++.. +++++||+.+++|||....++..++.......+ .+ ...++..+++
T Consensus 97 ~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~ 169 (392)
T 3ruy_A 97 LPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGF--GP-----MLPGIIVIPY 169 (392)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTC--CS-----CCSSEEEECT
T ss_pred EEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhcccc--CC-----CCCCCeeeCc
Confidence 99999999999999987766 567899999999999999888876653322111 11 1123677889
Q ss_pred CCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCce
Q 011959 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDL 309 (474)
Q Consensus 231 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi 309 (474)
+|+++|+++++ +++++|++++++|++|.+.++++|+++|+++|++||++||+||+|+|| +.|..+..+.+++.||+
T Consensus 170 ~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~ 246 (392)
T 3ruy_A 170 GDLEALKAAIT---PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDM 246 (392)
T ss_dssp TCHHHHHHHCC---TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSE
T ss_pred ccHHHHHHHhc---cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCE
Confidence 99999999987 479999999999999999999999999999999999999999999999 88888888888999999
Q ss_pred eehhhhcCCC-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Q 011959 310 TTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 388 (474)
Q Consensus 310 ~t~sK~l~~G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~ 388 (474)
+||||+++|| +|+||+++++++++.+. ...+.++++.|+++++++.++|+.++++++.++++++.+++++.|+++.
T Consensus 247 ~~~SK~l~gG~~~~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~ 323 (392)
T 3ruy_A 247 YILGKALGGGVFPISCAAANRDILGVFE---PGSHGSTFGGNPLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKEID 323 (392)
T ss_dssp EEECGGGGTTTSCCEEEEECHHHHTTCC---TTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEchhhhCChhhhEEEEECHHHHhhhc---cCCcCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999 99999999999998876 3446678999999999999999988768899999999999999987652
Q ss_pred hhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEe--cCCcHHHHHHHHHH
Q 011959 389 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITA 466 (474)
Q Consensus 389 ~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~ 466 (474)
.+....+++.|.++++.+... ..++.+.|.++||++.+++...+|++ +.+|++++++++++
T Consensus 324 --~~~~~~~~~~g~~~~~~~~~~---------------~~~l~~~l~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~ 386 (392)
T 3ruy_A 324 --NPMITEVRGKGLFIGIELNEP---------------ARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQK 386 (392)
T ss_dssp --CTTEEEEEEETTEEEEEESSC---------------SHHHHHHHHTTTEECCCBTTTEEEECCCTTCCHHHHHHHHHH
T ss_pred --CCCceEEEeeeeEEEEEEcch---------------HHHHHHHHHHCCcEEecCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 245667788899999887431 15788899999999999877778886 78899999999999
Q ss_pred HHHHHh
Q 011959 467 AEKVLR 472 (474)
Q Consensus 467 l~~~~~ 472 (474)
|+++++
T Consensus 387 l~~~l~ 392 (392)
T 3ruy_A 387 IKAVLS 392 (392)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998863
No 36
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=100.00 E-value=5e-50 Score=403.64 Aligned_cols=368 Identities=26% Similarity=0.365 Sum_probs=316.9
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCC--CCCCCHHHHHHHHHHHhhCCCCCeE
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTS--FGAPCLLENVLAEMVISAVPSIEMV 158 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~~~~~~~~~la~~l~~~~~~~~~v 158 (474)
.|+++++++|+++||.+|++||||.++++++++||+||++.+++.+++++... ..++.+...++++++++++ +.+++
T Consensus 21 ~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~~~~v 99 (406)
T 4adb_A 21 APFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDAT-FADRV 99 (406)
T ss_dssp CSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHS-SCSEE
T ss_pred CCceEEeeccCEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhC-CCCeE
Confidence 48899999999999999999999999999999999999999999999987432 3357788999999999999 56799
Q ss_pred EEeCCHHHHHHHHHHHhHhh------cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCC
Q 011959 159 RFVNSGTEACMGVLRLARAF------TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~------~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d 232 (474)
+|++||++|++.++++++.+ +++++||+.+++||+....+....+.......+. ....++..+|++|
T Consensus 100 ~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~d 172 (406)
T 4adb_A 100 FFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFA-------PLPADIRHAAYND 172 (406)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGC-------SCCSSEEEECTTC
T ss_pred EEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCC-------CCCCCceEeCCCc
Confidence 99999999999999987655 7789999999999999988888777543321111 1123577888999
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceee
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t 311 (474)
+++|++.++ +++++|+++|+++++|.+.++.+++++|+++|++||++||+||+|+|| +.|..+..+.+++.||++|
T Consensus 173 ~~~l~~~l~---~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~t 249 (406)
T 4adb_A 173 INSASALID---DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLT 249 (406)
T ss_dssp HHHHHTTCS---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE
T ss_pred HHHHHHHhc---CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEEE
Confidence 999999886 478999999988888888778888999999999999999999999999 8888777788899999999
Q ss_pred hhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011959 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 312 ~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (474)
|||++++|+|+||+++++++++.+. ...+..+++.|+++++++.++|+.++++++.++++++++++++.|+++...+
T Consensus 250 ~sK~~~~G~r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 326 (406)
T 4adb_A 250 TAKALGGGFPVGALLATEECARVMT---VGTHGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRY 326 (406)
T ss_dssp ECGGGGTTSCCEEEEECHHHHHTCC---TTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred echhhcCCCCeEEEEEcHHHHhhhc---cCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999887 3446678999999999999999988778889999999999999999887767
Q ss_pred CCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--ecCCcHHHHHHHHHHHHH
Q 011959 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--SLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~ 469 (474)
....++++.|.++++++..... ....++.+.|+++||++.+.+...+|+ ++.+|++++++++++|++
T Consensus 327 ~~~~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~~l~~~gi~v~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~ 395 (406)
T 4adb_A 327 GLFSEVRGLGLLIGCVLNADYA-----------GQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDRFAA 395 (406)
T ss_dssp CCEEEEEEETTEEEEEECTTTT-----------TCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CCceEEEEEEEEEEEEEeCCcH-----------HHHHHHHHHHHHCCcEEeecCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 7777888999999999864210 113578899999999999987778888 688999999999999999
Q ss_pred HHhh
Q 011959 470 VLRQ 473 (474)
Q Consensus 470 ~~~~ 473 (474)
++++
T Consensus 396 ~l~~ 399 (406)
T 4adb_A 396 ACEH 399 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 37
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=100.00 E-value=3.6e-47 Score=381.89 Aligned_cols=365 Identities=26% Similarity=0.364 Sum_probs=302.9
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHhhCCCCCeE
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVPSIEMV 158 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~~~~~v 158 (474)
+|+++.+++|+++||.+|++||||.++++++++||++|++++++.+++++.... .++.+...++++++++++ +.+++
T Consensus 22 ~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~~v 100 (397)
T 2ord_A 22 FPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNT-FGGKV 100 (397)
T ss_dssp CSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTT-TSCEE
T ss_pred CCceEEeeecCEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhc-CCCeE
Confidence 589999999999999999999999999999999999999999999999874321 245688899999999998 57899
Q ss_pred EEeCCHHHHHHHHHHHhHhh-----cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEccCCC
Q 011959 159 RFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~-----~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~d 232 (474)
++++||++|++.+++.++.+ +++++||+++++||+.....+...|......++ |.. .++..+|++|
T Consensus 101 ~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~--------~~~~~~~~~d 172 (397)
T 2ord_A 101 FFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLV--------PGFEYFEFNN 172 (397)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCC--------TTEEEECTTC
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCC--------CCeeEecCCC
Confidence 99999999999999976544 467789999999999988766665542111000 111 2367778889
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceee
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t 311 (474)
+++|++.++ +++++|++++++|++|.+.++.+++++|+++|++||++||+||+|+|| +.|..+..+.+++.||++|
T Consensus 173 ~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~s 249 (397)
T 2ord_A 173 VEDLRRKMS---EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLT 249 (397)
T ss_dssp HHHHHHHCC---TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE
T ss_pred HHHHHHHhh---cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCeee
Confidence 999999886 378999999999999986667777999999999999999999999999 7776666667788899999
Q ss_pred hhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011959 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 312 ~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (474)
|||++++|+|+||++++++++ .+. ...+..+++.|+++++++.++|+.++++++.++++++++++++.|+++...+
T Consensus 250 ~sK~~~~G~r~G~~~~~~~~~-~l~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 325 (397)
T 2ord_A 250 TAKGLGGGVPIGAVIVNERAN-VLE---PGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEY 325 (397)
T ss_dssp ECGGGGTTSCCEEEEECSTTC-CCC---TTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eccccCCCcCeEEEEEchHhc-ccC---CCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999998876 554 2345668899999999999999988777899999999999999998875455
Q ss_pred CCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEe--cCCcHHHHHHHHHHHHH
Q 011959 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEK 469 (474)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~~ 469 (474)
+....+++.|.++++.+.... ...++.+.|+++||++.+++...+|++ +.++++++++++++|++
T Consensus 326 ~~~~~~~~~g~~~~~~~~~~~-------------~~~~l~~~l~~~gi~v~~~~~~~iRis~~~~~~~e~i~~~~~~l~~ 392 (397)
T 2ord_A 326 DVVADVRGMGLMIGIQFREEV-------------SNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKK 392 (397)
T ss_dssp TTEEEEEEETTEEEEEECTTS-------------CHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CceEEEEEEeEEEEEEECChH-------------HHHHHHHHHHHCCCEEccCCCCEEEEECCcCCCHHHHHHHHHHHHH
Confidence 655567788999998874310 125788899999999998866678886 67899999999999999
Q ss_pred HHhhC
Q 011959 470 VLRQI 474 (474)
Q Consensus 470 ~~~~~ 474 (474)
+++++
T Consensus 393 ~l~~~ 397 (397)
T 2ord_A 393 VLQGI 397 (397)
T ss_dssp HHHTC
T ss_pred HHhhC
Confidence 98764
No 38
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=100.00 E-value=4.9e-46 Score=373.31 Aligned_cols=361 Identities=30% Similarity=0.433 Sum_probs=298.7
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHHhhCC-CCCe
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF--GAPCLLENVLAEMVISAVP-SIEM 157 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~-~~~~ 157 (474)
.|+++.+++|+++||.+|++||||.++.+++++||.+|.+++++.+++++.... .++.+...+++++++++++ +.++
T Consensus 27 ~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~ 106 (395)
T 1vef_A 27 HDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNR 106 (395)
T ss_dssp CSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCTTEEE
T ss_pred CCccEEecccCEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHHHhcCCCcCE
Confidence 488899999999999999999999999988999999999999999999874321 2467889999999999986 5789
Q ss_pred EEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCC-CCCCCCCCCCCCCceEEccCCCHHHH
Q 011959 158 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLG-LPDSPGVPKGATYETLTAPFNDVSAL 236 (474)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~-~~~~~g~~~~~~~~~~~~~~~d~~~l 236 (474)
+++++||++|++.+++.++.++++++||+++++||+.....+...|....... .|. ..++..++++|+++|
T Consensus 107 v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~--------~~~~~~~~~~d~~~l 178 (395)
T 1vef_A 107 VFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPL--------VEPVEFIPYNDVEAL 178 (395)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSC--------SSCEEEECTTCHHHH
T ss_pred EEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCC--------CCCeeEeCCCcHHHH
Confidence 99999999999999997665577889999999999988777666554321100 011 123566777899999
Q ss_pred HHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhh
Q 011959 237 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKI 315 (474)
Q Consensus 237 e~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~ 315 (474)
++.++ +++++|+++|+++++|.+.++++++++|.++|++||++||+||+|+|| +.|..+..+.+++.+|+++|||+
T Consensus 179 ~~~i~---~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~ 255 (395)
T 1vef_A 179 KRAVD---EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKA 255 (395)
T ss_dssp HHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGG
T ss_pred HHHhc---cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEEEEccc
Confidence 99986 368999999999999999999999999999999999999999999999 77766666777888999999999
Q ss_pred cCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCee
Q 011959 316 IGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (474)
Q Consensus 316 l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (474)
+++|+|+||+++++++++.+.. ..+..+++.|+++++++.++|+.+.++++.++++++++++++.|+++.. +...
T Consensus 256 ~~~g~~~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~ 330 (395)
T 1vef_A 256 LGGGVPLGVAVMREEVARSMPK---GGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAIPS--PKIR 330 (395)
T ss_dssp GGTTSSCEEEEEEHHHHHTSCT---TSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTSCC--TTEE
T ss_pred ccCCCceEEEEehHHHHhhhcc---CCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc--CceE
Confidence 9999999999999998887763 2345678899999999999999876667888999999999998876532 3344
Q ss_pred EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccCCcceEEe--cCCcHHHHHHHHHHHHHHHh
Q 011959 396 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~~~~~ 472 (474)
.+++.|.++++.+..+ ...+.+.|+ ++||++.+.+...+|++ +.++++++++++++|+++++
T Consensus 331 ~~~~~g~~~~~~~~~~---------------~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 395 (395)
T 1vef_A 331 EVRGMGLMVGLELKEK---------------AAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVLA 395 (395)
T ss_dssp EEEEETTEEEEEESSC---------------SHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred EEEEEEEEEEEEEcCh---------------HHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence 5677888999887421 156888888 99999998766678884 57899999999999998863
No 39
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=100.00 E-value=1.5e-43 Score=352.56 Aligned_cols=355 Identities=28% Similarity=0.390 Sum_probs=289.7
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHHHhhCCCCCeE
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPCLLENVLAEMVISAVPSIEMV 158 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~~~~~~~~~la~~l~~~~~~~~~v 158 (474)
.|+++.+++|+++||.+|+.||||.++.+.+++||.+|.+.+++.+++++.. ...++.....+++++++++++-.+++
T Consensus 10 ~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~~~v 89 (375)
T 2eh6_A 10 LPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTEGKV 89 (375)
T ss_dssp EEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTSSSCEEE
T ss_pred CCccEEeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhcCCCCeE
Confidence 4889999999999999999999999998878999999999999999997642 12356777889999999988423899
Q ss_pred EEeCCHHHHHHHHHHHhHhhc-----CCcEEEEEeCCCCCCchhHHHhcCCCCccCCC-CCCCCCCCCCCCceEEccCCC
Q 011959 159 RFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYHGHADPFLVKAGSGVATLGL-PDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~-----~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~~~~~~~~d 232 (474)
++++||++|++.++++++.++ ++++|++.+++||+....+....+..+..... +. ..++..++++|
T Consensus 90 ~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~d 161 (375)
T 2eh6_A 90 FFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPL--------VPGFSYAKLND 161 (375)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSC--------CSSEEEECTTC
T ss_pred EEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCC--------CCCceeCCCch
Confidence 999999999999999766554 45899999999999988777665543211111 11 12366777789
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceee
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT 311 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t 311 (474)
+++|++.++ +++++|+++|+++++|.+.++++++++|.++|++||++||+||+|+|| +.+..+..+.++..+|+++
T Consensus 162 ~~~l~~~l~---~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s 238 (375)
T 2eh6_A 162 IDSVYKLLD---EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIA 238 (375)
T ss_dssp HHHHHTTCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE
T ss_pred HHHHHHHhc---CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEE
Confidence 999998886 368999999999999999899999999999999999999999999999 6665555667788899999
Q ss_pred hhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc
Q 011959 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 312 ~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (474)
|||.+++|+|+||+++++++++.+.. ..+..+++.++++++++.++|+.+. ++.++++++++++++.|+++.
T Consensus 239 ~SK~~~~g~~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~--- 310 (375)
T 2eh6_A 239 LAKGLGGGVPIGAILAREEVAQSFTP---GSHGSTFGGNPLACRAGTVVVDEVE--KLLPHVREVGNYFKEKLKELG--- 310 (375)
T ss_dssp ECGGGGTTSCCEEEEEEHHHHTTCCT---TSCCCSSTTCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTT---
T ss_pred EcccccCCCCeEEEEEcHHHHhhhcC---CCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh---
Confidence 99999999999999999998887763 2345678889999999999998775 678888888888888887642
Q ss_pred CCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEe--cCCcHHHHHHHHHHHHH
Q 011959 392 GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEK 469 (474)
Q Consensus 392 ~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~~ 469 (474)
. ..+++.|.++++++..+ ..++.+.|+++||.+.+.+...+|++ ..++++++++++++|++
T Consensus 311 -~-~~~~~~g~~~~~~~~~~---------------~~~~~~~l~~~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 373 (375)
T 2eh6_A 311 -K-GKVKGRGLMLGLELERE---------------CKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLRE 373 (375)
T ss_dssp -S-SEEEEETTEEEEECSSC---------------CHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred -c-CCceEEEEEEEEEEcCc---------------HHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2 34567889988877421 14678888999999998766678886 57899999999999987
Q ss_pred HH
Q 011959 470 VL 471 (474)
Q Consensus 470 ~~ 471 (474)
++
T Consensus 374 ~l 375 (375)
T 2eh6_A 374 IL 375 (375)
T ss_dssp HC
T ss_pred hC
Confidence 63
No 40
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=100.00 E-value=3.6e-40 Score=334.17 Aligned_cols=365 Identities=19% Similarity=0.201 Sum_probs=283.9
Q ss_pred CchhHHHHHHHHhhhCCCCCCCccccccccCCCCeEEE-eeccCEEEEcCCCEEEeccCChhhccCC-CCCHHHHHHHHH
Q 011959 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFD-SVKGSHMWDIDGNEYIDYVGSWGPAIIG-HADDQVLAALGE 126 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~-~~~G~~~~d~dG~~~iD~~~~~~~~~lG-~~~p~v~~a~~~ 126 (474)
.+.+++++.++.+++.+.|+. +|. +.++. +++|+++|| ||++||||.+| +++| +.+|++++++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~g~~--~r~-------~~~~~~~~~g~~~~~-~g~~~id~~~~---~~lg~~~~~~v~~a~~~ 89 (427)
T 2w8t_A 23 LLSKFDGLIAERQKLLDSGVT--DPF-------AIVMEQVKSPTEAVI-RGKDTILLGTY---NYMGMTFDPDVIAAGKE 89 (427)
T ss_dssp TTGGGHHHHHHHHHHHHTTCC--CTT-------CCCCSEEEETTEEEE-TTEEEEECSCC---CTTCGGGCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCc--cee-------eeeccccCCCceEee-CCceEEEEECc---ccccCCCCHHHHHHHHH
Confidence 455788899999998888843 232 34567 999999999 99999999999 6899 589999999999
Q ss_pred HHHh-cCCCC------CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHH
Q 011959 127 TMKK-GTSFG------APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 199 (474)
Q Consensus 127 ~~~~-~~~~~------~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~ 199 (474)
++.+ +..++ +..+...+|++.+++++ +.+++++++||++|+..+++ .++++++.|+++..+|+.....+
T Consensus 90 ~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~-g~~~~i~~~sGs~a~~~al~---~l~~~gd~vl~~~~~h~~~~~~~ 165 (427)
T 2w8t_A 90 ALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFY-GTTGAIVFSTGYMANLGIIS---TLAGKGEYVILDADSHASIYDGC 165 (427)
T ss_dssp HHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHH---HHSCTTCEEEEETTCCHHHHHHH
T ss_pred HHHHhCCCCcccccccCCcHHHHHHHHHHHHHh-CCCceEEecCcHHHHHHHHH---HhcCCCCEEEECCcccHHHHHHH
Confidence 9987 43222 24678889999999988 56788999999999999998 45666666667777777665555
Q ss_pred HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCC-CeEEEEEccccCCCCcccCCHHHHHHHHHHHHH
Q 011959 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG-EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE 278 (474)
Q Consensus 200 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~-~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~ 278 (474)
...|. +++.++++|+++|+++++++++ ++++|++++++|++|.+.+ +++|+++|++
T Consensus 166 ~~~g~-------------------~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~ 222 (427)
T 2w8t_A 166 QQGNA-------------------EIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKK 222 (427)
T ss_dssp HHSCS-------------------EEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHHHHHHH
T ss_pred HHcCC-------------------eeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHHHHHHH
Confidence 44332 3567778899999999986543 6899999999999999998 9999999999
Q ss_pred hCCEEEEeccccCcccC--CCccccccCCCCc----eeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChH
Q 011959 279 NGALLIFDEVMTGFRLA--YGGAQEYFGVTPD----LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 352 (474)
Q Consensus 279 ~g~llI~DEv~~g~r~g--~~~~~~~~g~~pd----i~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~ 352 (474)
||++||+||+|+++..+ ..+..+++++.+| +.||||+++ ++.||+++++++++.+......+. .+++.|++
T Consensus 223 ~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~g--~~gG~v~~~~~l~~~l~~~~~~~~-~~~~~~~~ 299 (427)
T 2w8t_A 223 HGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSVG--TVGGFVVSNHPKFEAVRLACRPYI-FTASLPPS 299 (427)
T ss_dssp TTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTC--SCCEEEEECCTTGGGGGGTCHHHH-SSCCCCHH
T ss_pred cCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhhc--cCCCEEEeCHHHHHHHHHhccccc-ccCCCCHH
Confidence 99999999999876222 2334566777666 568999996 456999999999998874322222 35678999
Q ss_pred HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee-eceeEEEEEecCCCcCcccccccchHHHHHH
Q 011959 353 AMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARF 430 (474)
Q Consensus 353 ~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 430 (474)
.++++.++|+.+++ ++++++++++++++++.|+++ ++.....+ .|.++++.+.+ .....++
T Consensus 300 ~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~-------------~~~~~~l 362 (427)
T 2w8t_A 300 VVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM----GFRLGTETCDSAIVAVMLED-------------QEQAAMM 362 (427)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH----TCEESCSSCCSSEEEEEESS-------------HHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc----CCcccCCCCCCCEEEEEECC-------------HHHHHHH
Confidence 99999999998876 678899999999999999876 22221133 67788887732 2334678
Q ss_pred HHHHHHCCeEecccCC-------cceEEecC--CcHHHHHHHHHHHHHHHhh
Q 011959 431 YRGMLEEGVYFAPSQF-------EAGFTSLA--HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 431 ~~~l~~~Gv~v~~~~~-------~~~~~~~~--~t~e~i~~~l~~l~~~~~~ 473 (474)
.+.|+++||++.++.. ..+|+++. +|++++++++++|++++++
T Consensus 363 ~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~ 414 (427)
T 2w8t_A 363 WQALLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRA 414 (427)
T ss_dssp HHHHHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999987642 35677644 6999999999999998864
No 41
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=5.8e-40 Score=332.07 Aligned_cols=356 Identities=11% Similarity=0.019 Sum_probs=257.7
Q ss_pred CCCCeEEEeeccCEEEEcC--CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC-CCCHHHHHHHHHHHhhCC-
Q 011959 79 GGQPIVFDSVKGSHMWDID--GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG-APCLLENVLAEMVISAVP- 153 (474)
Q Consensus 79 ~~~p~~~~~~~G~~~~d~d--G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~-~~~~~~~~la~~l~~~~~- 153 (474)
+..+++..+++|+++||.+ |++||||..+ ++..+.+|+|++++.++++++. .|+ ...+++.++++++.+.++
T Consensus 39 ~~~~~~~~~g~g~~~~d~~~~g~~~i~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~g~ 115 (421)
T 3l8a_A 39 DFTTRPDRLNQFTYKWKTSENNPELLQMWVA---DMDFLPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEHDY 115 (421)
T ss_dssp CCSCCCCCTTTTBTTTGGGTTCTTCEECCSS---CCCSCCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHHCC
T ss_pred cCCcccccCCCCCccccccCCCCCeeecccC---CCCCCCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhCC
Confidence 3347788999999999999 8999999777 5556689999999999998743 232 236778899999988764
Q ss_pred --CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC
Q 011959 154 --SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231 (474)
Q Consensus 154 --~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 231 (474)
..++|+|++||++|++.+++.+ ...+++||+.+++||+....+.. .|..+...++....+ .+. .
T Consensus 116 ~~~~~~v~~~~g~~ea~~~a~~~~--~~~gd~Vi~~~~~y~~~~~~~~~-~g~~~~~~~~~~~~~--------~~~---~ 181 (421)
T 3l8a_A 116 AVVKEDILFIDGVVPAISIALQAF--SEKGDAVLINSPVYYPFARTIRL-NDHRLVENSLQIING--------RFE---I 181 (421)
T ss_dssp CCCGGGEEEESCHHHHHHHHHHHH--SCTEEEEEEEESCCHHHHHHHHH-TTEEEEEEECEEETT--------EEE---C
T ss_pred CCCHHHEEEcCCHHHHHHHHHHHh--cCCCCEEEECCCCcHHHHHHHHH-CCCEEEeccccccCC--------Cee---e
Confidence 4678999999999999999953 33457899999999996554433 333221111100000 111 1
Q ss_pred CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-cc-----cccC
Q 011959 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQ-----EYFG 304 (474)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~-----~~~g 304 (474)
|+++|++.+++ +++++|++++++|++|.+++ ++++++|+++|++||++||+||+|++| ++|... .. ++.+
T Consensus 182 d~~~le~~i~~--~~~~~vil~~p~nptG~~~~-~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~ 258 (421)
T 3l8a_A 182 DFEQLEKDIID--NNVKIYLLCSPHNPGGRVWD-NDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKD 258 (421)
T ss_dssp CHHHHHHHHHH--TTEEEEEEESSBTTTTBCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGG
T ss_pred CHHHHHHHhhc--cCCeEEEECCCCCCCCCcCC-HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcC
Confidence 89999999974 26899999999999996655 555999999999999999999999999 776422 11 1234
Q ss_pred CCCceeehhhhcC-CCcceEEEEec-HHHHHhhcCCCCcc-cccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHH
Q 011959 305 VTPDLTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMY-QAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGE 379 (474)
Q Consensus 305 ~~pdi~t~sK~l~-~G~~iG~~~~~-~~i~~~~~~~~~~~-~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~ 379 (474)
..+++.++||+++ +|+|+||++++ +++++.+.. .. ..+++++|+++++++.++|+..++ ++..++++++.++
T Consensus 259 ~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~~~~~~---~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~ 335 (421)
T 3l8a_A 259 FTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQY---RQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKL 335 (421)
T ss_dssp TEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHH---HHHHTTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeChhhccCchhheEeEEcCCHHHHHHHHH---HHHhcccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4466779999998 89999999998 899888763 22 334568999999999999985332 3445555555666
Q ss_pred HHHHHHHHhhhcCCeeEEeeeceeEE-EEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC------CcceEE
Q 011959 380 LTQGIIDAGKKAGHAICGGYISGMFG-FFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFT 451 (474)
Q Consensus 380 l~~~L~~~~~~~~~~~~v~~~g~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~~~ 451 (474)
+++.|++. +.+..+++.|.++. +++..... ...++.+.|++ +||++.++. ...+|+
T Consensus 336 l~~~L~~~----~~i~~~~~~~~~~~~v~~~~~~~------------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi 399 (421)
T 3l8a_A 336 VIKELEAK----TKIKVMEPEGTYLVWLDFSAYAI------------AQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARL 399 (421)
T ss_dssp HHHHHHHH----CSCEEECCSBSSEEEEECGGGTC------------CTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEE
T ss_pred HHHHHHhC----CCceEeCCCeeEEEEEeccccCC------------CHHHHHHHHHHhCCEEEECchhhCCCCCCEEEE
Confidence 66655543 33445666777665 66643110 01467788875 599998742 356799
Q ss_pred ecCCcHHHHHHHHHHHHHHHhh
Q 011959 452 SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 452 ~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
++.+++++|++++++|++++++
T Consensus 400 ~~~~~~~~i~~~l~~l~~~l~~ 421 (421)
T 3l8a_A 400 NVATPKNTVQEALSRIISVFGK 421 (421)
T ss_dssp ECCSCHHHHHHHHHHHHHHC--
T ss_pred EecCCHHHHHHHHHHHHHHHhC
Confidence 8889999999999999998753
No 42
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=100.00 E-value=8.3e-37 Score=306.21 Aligned_cols=342 Identities=18% Similarity=0.250 Sum_probs=263.5
Q ss_pred CeEEEeeccCEEEEcCCCEEEeccCChhhccCC-CCCHHHHHHHHHHHHhcC-C-----C-CCCCHHHHHHHHHHHhhCC
Q 011959 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG-HADDQVLAALGETMKKGT-S-----F-GAPCLLENVLAEMVISAVP 153 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~-~-----~-~~~~~~~~~la~~l~~~~~ 153 (474)
+..+++++|+++|| +|++||||.++ +++| +++|++.+++.+++.+.. . + .+..+...+++++++++++
T Consensus 27 ~~~~~~~~g~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~ 102 (399)
T 3tqx_A 27 ERIITSPQNAEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLG 102 (399)
T ss_dssp CCCBCSCSSSEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHT
T ss_pred cccccCCCCceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHC
Confidence 66789999999999 99999999999 8899 689999999999997721 1 1 1245678899999998884
Q ss_pred CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCH
Q 011959 154 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 233 (474)
Q Consensus 154 ~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~ 233 (474)
.++.++++||++|+..+++ .+.++++.|+++..+|+.+...+...|. +++.+|++|+
T Consensus 103 -~~~~i~~~sGt~a~~~~l~---~~~~~gd~v~~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d~ 159 (399)
T 3tqx_A 103 -TDDTILYSSCFDANGGLFE---TLLGPEDAIISDELNHASIIDGIRLCKA-------------------QRYRYKNNAM 159 (399)
T ss_dssp -CSEEEEESCHHHHHHTTHH---HHCCTTCEEEEETTCCHHHHHHHHSCCS-------------------EEEEECTTCT
T ss_pred -CCcEEEECchHHHHHHHHH---HhcCCCCEEEECCcccHHHHHHHHHcCC-------------------ceeEeCCCCH
Confidence 4567778889999999998 4556555566666666655554443332 3566677789
Q ss_pred HHHHHHHhcCCC---CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCC--C
Q 011959 234 SALENLFENNKG---EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGV--T 306 (474)
Q Consensus 234 ~~le~~l~~~~~---~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~--~ 306 (474)
++|++.++++.+ ++++|++++++|++|.+.+ +++|.++|++||++||+||+| .|+ ........+.+++ .
T Consensus 160 ~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 235 (399)
T 3tqx_A 160 GDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADR 235 (399)
T ss_dssp THHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTC
T ss_pred HHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCC
Confidence 999998876332 6899999999999999998 999999999999999999999 576 3222234566676 7
Q ss_pred Ccee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHH
Q 011959 307 PDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-KE-PGTYEYLNKITGELTQ 382 (474)
Q Consensus 307 pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~-~~-~~~~~~~~~~~~~l~~ 382 (474)
+|++ ++||+++ |++.||+++++++++.+......+. .+.+.+++.++++.++++.+ +. ++..++++++.+++.+
T Consensus 236 ~di~~~s~sK~~~-g~~gG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 313 (399)
T 3tqx_A 236 VDILTGTLGKALG-GASGGYTSGHKEIIEWLRNRSRPYL-FSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRA 313 (399)
T ss_dssp CSEEEEESSSSSC-SSCCEEEEECHHHHHHHHHHCHHHH-SSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CcEEEecchHhcc-cCceEEEEcCHHHHHHHHHhCccee-ccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 7887 8999998 7788999999999988864211122 24477899999999999987 43 6788888899999999
Q ss_pred HHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-------cceEEec--
Q 011959 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSL-- 453 (474)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~~~~~~-- 453 (474)
.|+++. ..+ .++.|.++++.+.. .....++.+.|+++||++.++.+ ..+|+++
T Consensus 314 ~L~~~g--~~~---~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~ 375 (399)
T 3tqx_A 314 GMEKLG--FQL---VPGNHPIIPVMLGD-------------AQLATNMADHLLQEGIYVVGFSYPVVPMGKARIRVQMSA 375 (399)
T ss_dssp HHHHHT--CCB---CCCSSSEEEEEEEC-------------HHHHHHHHHHHHHTTEECCEECTTTSCTTCEEEEEECCT
T ss_pred HHHHcC--CCc---CCCCCCEEEEEeCC-------------HHHHHHHHHHHHHCCCEEeeeCCCCCCCCCceEEEEeec
Confidence 988762 222 25678888887742 23346889999999999986532 3567765
Q ss_pred CCcHHHHHHHHHHHHHHHhhC
Q 011959 454 AHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 454 ~~t~e~i~~~l~~l~~~~~~~ 474 (474)
.+|++++++++++|+++++++
T Consensus 376 ~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 376 VHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 589999999999999998764
No 43
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=100.00 E-value=1.2e-35 Score=298.35 Aligned_cols=343 Identities=19% Similarity=0.262 Sum_probs=260.0
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHh-cCCCCC------CCHHHHHHHHHHHhhC
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTSFGA------PCLLENVLAEMVISAV 152 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~-~~~~~~------~~~~~~~la~~l~~~~ 152 (474)
.|..+.+++|+++||.+|++||||.++ +++|+ ++|++++++.+++.+ +..++. ......+|.+.+++++
T Consensus 27 ~~~~~~~~~g~~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~ 103 (401)
T 1fc4_A 27 EERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL 103 (401)
T ss_dssp CCCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH
T ss_pred eeeeeccCCCceEEeeCCccEEEeecc---CcccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh
Confidence 378889999999999999999999999 78997 899999999999876 332211 2566788999999888
Q ss_pred CCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCC
Q 011959 153 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 153 ~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d 232 (474)
+ .++.+++++|++|++.+++. +.++++.|++...+|+.....+...|. +++.++.+|
T Consensus 104 g-~~~~i~~~sGs~a~~~~~~~---~~~~gd~v~~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d 160 (401)
T 1fc4_A 104 G-MEDAILYSSCFDANGGLFET---LLGAEDAIISDALNHASIIDGVRLCKA-------------------KRYRYANND 160 (401)
T ss_dssp T-CSEEEEESCHHHHHHTTHHH---HCCTTCEEEEETTCCHHHHHHHHTSCS-------------------EEEEECTTC
T ss_pred C-CCcEEEeCChHHHHHHHHHH---HcCCCCEEEEcchhHHHHHHHHHHcCC-------------------ceEEECCCC
Confidence 4 34677888899999999884 455555666666667654444333222 355666779
Q ss_pred HHHHHHHHhcCCC---CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-c-cCCCccccccCCC
Q 011959 233 VSALENLFENNKG---EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-R-LAYGGAQEYFGVT 306 (474)
Q Consensus 233 ~~~le~~l~~~~~---~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r-~g~~~~~~~~g~~ 306 (474)
+++|++.+++.++ ++++|++++++|++|.+.+ +++|.++|++||++||+||+| .|+ . .+..+ .+++++.
T Consensus 161 ~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~-~~~~~~~ 235 (401)
T 1fc4_A 161 MQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS-HEYCDVM 235 (401)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH-HHHTTCT
T ss_pred HHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCCcc-HHHcCCC
Confidence 9999999875221 5789999999999999998 999999999999999999999 588 3 44432 3445554
Q ss_pred C--cee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 011959 307 P--DLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELT 381 (474)
Q Consensus 307 p--di~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~ 381 (474)
+ |++ ++||+++++. .||+++++++++.+...... ...+++.|+++++++.++|+.+++ +++.++++++++++.
T Consensus 236 ~~~di~~~s~sK~~~~~~-gG~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~ 313 (401)
T 1fc4_A 236 GRVDIITGTLGKALGGAS-GGYTAARKEVVEWLRQRSRP-YLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFR 313 (401)
T ss_dssp TCCSEEEEESSSTTCSSS-CEEEEECHHHHHHHHHHCHH-HHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCcEEEecchhhccCCC-CEEEEcCHHHHHHHHHhCcC-ceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 4 666 8999996554 59999999999888632111 223668899999999999998765 577888888999999
Q ss_pred HHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-------cceEEecC
Q 011959 382 QGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSLA 454 (474)
Q Consensus 382 ~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~~~~~~~ 454 (474)
+.|++. ...+ .++.|.++++.+.+ .....++.+.|.++||++.++.. ..+|+++.
T Consensus 314 ~~L~~~--g~~~---~~~~~~~~~~~~~~-------------~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~ 375 (401)
T 1fc4_A 314 EQMSAA--GFTL---AGADHAIIPVMLGD-------------AVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMS 375 (401)
T ss_dssp HHHHHT--TCCB---CCSSSSEEEEEEEC-------------HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECC
T ss_pred HHHHHc--CCcc---cCCCCCEEEEEcCC-------------hHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeC
Confidence 888875 2222 24678888887742 12346788899999999987642 24777654
Q ss_pred --CcHHHHHHHHHHHHHHHhhC
Q 011959 455 --HSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 455 --~t~e~i~~~l~~l~~~~~~~ 474 (474)
+|++++++++++|+++++++
T Consensus 376 ~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 376 AAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHh
Confidence 79999999999999998763
No 44
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=1.2e-35 Score=296.87 Aligned_cols=356 Identities=12% Similarity=0.084 Sum_probs=255.2
Q ss_pred eEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCCC-CCHHHHHHHHHHHhhCC---CCCe
Q 011959 83 IVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA-PCLLENVLAEMVISAVP---SIEM 157 (474)
Q Consensus 83 ~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~-~~~~~~~la~~l~~~~~---~~~~ 157 (474)
++..+++|+++||.+|++||||..+ ++..+.+|.|++++.+++.++. .|+. ..+++.++++++.+.++ ..++
T Consensus 11 ~~~~~~~g~~~~d~~g~~~i~~~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~ 87 (391)
T 3dzz_A 11 HVPKRQGNSIKWGVLKEKELPMWIA---EMDFKIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDW 87 (391)
T ss_dssp SCCCCCTTBTTTTTCCTTCEECCSS---CCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGG
T ss_pred hhccCCCCccceeccCCCceecccc---CCCCCCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence 6678999999999999999999987 5555589999999999998742 2322 45678889999988764 4689
Q ss_pred EEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHH
Q 011959 158 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237 (474)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le 237 (474)
|++++||++|++.+++.. ..++++|++.+++||+....+ ...|..+..++.....+ .+. .|+++|+
T Consensus 88 i~~~~g~~~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~--------~~~---~d~~~l~ 153 (391)
T 3dzz_A 88 CVFASGVVPAISAMVRQF--TSPGDQILVQEPVYNMFYSVI-EGNGRRVISSDLIYENS--------KYS---VNWADLE 153 (391)
T ss_dssp EEEESCHHHHHHHHHHHH--SCTTCEEEECSSCCHHHHHHH-HHTTCEEEECCCEEETT--------EEE---CCHHHHH
T ss_pred EEECCCHHHHHHHHHHHh--CCCCCeEEECCCCcHHHHHHH-HHcCCEEEEeeeeecCC--------cee---ecHHHHH
Confidence 999999999999999953 345678999899998855443 33343322211100011 011 2899999
Q ss_pred HHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC-CccccccCC-CCc----ee
Q 011959 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGV-TPD----LT 310 (474)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~g~-~pd----i~ 310 (474)
+.+++. ++++|+++.++|++|.+.+..+ +++|+++|++||++||+||+|++| +.|. ......++. .+| +.
T Consensus 154 ~~l~~~--~~~~v~i~~p~nptG~~~~~~~-l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~ 230 (391)
T 3dzz_A 154 EKLATP--SVRMMVFCNPHNPIGYAWSEEE-VKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLI 230 (391)
T ss_dssp HHHTST--TEEEEEEESSBTTTTBCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEE
T ss_pred HHHhcc--CceEEEEECCCCCCCcccCHHH-HHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEE
Confidence 999742 6788888888888998876555 999999999999999999999988 6653 333333332 267 45
Q ss_pred ehhhhcC-CCcceEEEEec-HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHH
Q 011959 311 TLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIID 386 (474)
Q Consensus 311 t~sK~l~-~G~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~ 386 (474)
++||+++ +|+|+||++++ +++++.+... ....++++.|+++++++.++|+...+ ++..++++++.+++.+.|++
T Consensus 231 s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 308 (391)
T 3dzz_A 231 SPSKTFNLAALHAACAIIPNPDLRARAEES--FFLAGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAK 308 (391)
T ss_dssp CSHHHHTCTTTCCEEEECCSHHHHHHHHHH--HHHHTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eChhhccccchhheEEEECCHHHHHHHHHH--HHhhccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999998 89999999997 8898887631 12244678899999999999986322 44555666666666666665
Q ss_pred HhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHH
Q 011959 387 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDD 459 (474)
Q Consensus 387 ~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~ 459 (474)
... ++....+..+.++++.+.... ....++.+.|+ ++||++.++. ...+|+++.+++++
T Consensus 309 ~~~--~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~~~~~ 374 (391)
T 3dzz_A 309 EVP--EVKVLDSNASYLAWVDISALG------------MNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLACPKEL 374 (391)
T ss_dssp HCT--TSEECCCCBSSEEEEECGGGC------------SCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCSCHHH
T ss_pred hCC--CcEEeccCceEEEEEehhhcC------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecCCHHH
Confidence 321 222222233444556653210 01257888886 8899998753 24578988899999
Q ss_pred HHHHHHHHHHHHhhC
Q 011959 460 IQHTITAAEKVLRQI 474 (474)
Q Consensus 460 i~~~l~~l~~~~~~~ 474 (474)
+++++++|+++++++
T Consensus 375 i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 375 VIDGMQRLKQGVLNL 389 (391)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
No 45
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=6.7e-36 Score=297.43 Aligned_cols=343 Identities=13% Similarity=0.053 Sum_probs=245.6
Q ss_pred EEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCC-CCCHHHHHHHHHHHhhCC---CCCeE
Q 011959 84 VFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG-APCLLENVLAEMVISAVP---SIEMV 158 (474)
Q Consensus 84 ~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~-~~~~~~~~la~~l~~~~~---~~~~v 158 (474)
...+++|+++||.+|++||||.++. +.+ ..+|+|++++.+++.++ ..|+ ...+++.++++++.+.++ ..+++
T Consensus 8 ~~~~~~g~~~~d~~g~~~idl~~~~--~~~-~~~~~v~~a~~~~~~~~~~~y~~~~~~lr~~la~~~~~~~~~~~~~~~i 84 (377)
T 3fdb_A 8 EDLRARNTMKWTRYGQGVLPLWVAE--SDF-STCPAVLQAITDAVQREAFGYQPDGSLLSQATAEFYADRYGYQARPEWI 84 (377)
T ss_dssp HHHHHTCCHHHHSSCTTSEECCSSC--CCS-CCCHHHHHHHHHHHHTTCCSSCCSSCCHHHHHHHHHHHHHCCCCCGGGE
T ss_pred HHhcCCCCceeeccCCCeeeecccC--CCC-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHE
Confidence 3458999999999999999999883 334 48999999999999873 2232 126778888888876543 46799
Q ss_pred EEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC---CHHH
Q 011959 159 RFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN---DVSA 235 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~---d~~~ 235 (474)
++++||++|++.+++.. ..++++|++..++||++...+. ..|..+ ..+|.+ |+++
T Consensus 85 ~~t~g~~~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~-~~g~~~-------------------~~~~~~~~~d~~~ 142 (377)
T 3fdb_A 85 FPIPDVVRGLYIAIDHF--TPAQSKVIVPTPAYPPFFHLLS-ATQREG-------------------IFIDATGGINLHD 142 (377)
T ss_dssp EEESCHHHHHHHHHHHH--SCTTCCEEEEESCCTHHHHHHH-HHTCCE-------------------EEEECTTSCCHHH
T ss_pred EEeCChHHHHHHHHHHh--cCCCCEEEEcCCCcHhHHHHHH-HcCCEE-------------------EEccCCCCCCHHH
Confidence 99999999999999952 3356789999999998654433 334322 222222 8999
Q ss_pred HHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC-C-Ccc---ccccCCCCce
Q 011959 236 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-Y-GGA---QEYFGVTPDL 309 (474)
Q Consensus 236 le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g-~-~~~---~~~~g~~pdi 309 (474)
|++.++++ +++++++.++|++|.+.+.++ +++|+++|++||++||+||+|++| +.+ . ... ....+..+++
T Consensus 143 l~~~l~~~---~~~v~i~~p~nptG~~~~~~~-l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 218 (377)
T 3fdb_A 143 VEKGFQAG---ARSILLCNPYNPLGMVFAPEW-LNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITI 218 (377)
T ss_dssp HHHHHHTT---CCEEEEESSBTTTTBCCCHHH-HHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEE
T ss_pred HHHHhccC---CCEEEEeCCCCCCCCCCCHHH-HHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEE
Confidence 99999853 456666555888898876555 999999999999999999999988 655 2 111 1112233456
Q ss_pred eehhhhcC-CCcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHH
Q 011959 310 TTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGII 385 (474)
Q Consensus 310 ~t~sK~l~-~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~ 385 (474)
.++||++| +|+|+||++. ++++++.+.. .....+++.|+++++++.++|+..++ ++..++++++.+++.+.|+
T Consensus 219 ~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 295 (377)
T 3fdb_A 219 TAPSKAWNIAGLKCAQIIFSNPSDAEHWQQ---LSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIP 295 (377)
T ss_dssp ECSTTTTTCGGGCCEEEECCSHHHHHHHHH---SCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeChHhccCcchhheEEEeCCHHHHHHHHH---HHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999997 7999998865 7888888863 33445678899999999999986432 4455666666666766666
Q ss_pred HHhhhcCCeeEEeeecee-EEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC------CcceEEecCCcH
Q 011959 386 DAGKKAGHAICGGYISGM-FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFTSLAHSS 457 (474)
Q Consensus 386 ~~~~~~~~~~~v~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~------~~~~~~~~~~t~ 457 (474)
+... ++ ....+.+.+ +++.+...... .++.+.|+++ ||++.++. ...+|+++..++
T Consensus 296 ~~~~--~~-~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~~~ 359 (377)
T 3fdb_A 296 KRIP--GA-KITPMQATYLMWIDFRDTTIE-------------GSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFATSR 359 (377)
T ss_dssp HHST--TC-EECCCSBCSEEEEECTTSCCC-------------SCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCH
T ss_pred hhCC--Cc-eEecCCeeEEEEEECcccCCC-------------HHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCCCH
Confidence 5321 22 223344444 46666431110 2456677765 99998763 346789888899
Q ss_pred HHHHHHHHHHHHHHhhC
Q 011959 458 DDIQHTITAAEKVLRQI 474 (474)
Q Consensus 458 e~i~~~l~~l~~~~~~~ 474 (474)
+++++++++|+++++++
T Consensus 360 e~i~~~l~~l~~~l~~~ 376 (377)
T 3fdb_A 360 EVLEEAIDRMAKAVSHH 376 (377)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999998763
No 46
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=6.6e-34 Score=285.35 Aligned_cols=340 Identities=19% Similarity=0.234 Sum_probs=255.8
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHhcC-CC------CCCCHHHHHHHHHHHhhC
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT-SF------GAPCLLENVLAEMVISAV 152 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~-~~------~~~~~~~~~la~~l~~~~ 152 (474)
.|+++++++|+++| .+|+++|||.++ +++|+ .+|.+.+++.+++++.. .+ .+..++..++++++++++
T Consensus 26 ~~~~~~~~~g~~~~-~~g~~~idl~~~---~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~ 101 (398)
T 3a2b_A 26 YFRPIQSKQDTEVK-IDGRRVLMFGSN---SYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYV 101 (398)
T ss_dssp SSCCBCSCSSSEEE-ETTEEEEECSCS---CTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH
T ss_pred ceeeecCCCCceEE-ECCceEEEeecc---cccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHh
Confidence 37889999999999 999999999998 55888 79999999999987632 11 124688899999999988
Q ss_pred CCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCC
Q 011959 153 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 153 ~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d 232 (474)
+.+++++++||++|++.+++. +.++++.|++...+|+.+...+...|. +++.+|..|
T Consensus 102 -g~~~v~~~~ggt~a~~~~~~~---~~~~gd~V~~~~p~~~~~~~~~~~~g~-------------------~~~~v~~~d 158 (398)
T 3a2b_A 102 -GKEAAILFSTGFQSNLGPLSC---LMGRNDYILLDERDHASIIDGSRLSFS-------------------KVIKYGHNN 158 (398)
T ss_dssp -TCSEEEEESSHHHHHHHHHHH---SSCTTCEEEEETTCCHHHHHHHHHSSS-------------------EEEEECTTC
T ss_pred -CCCcEEEECCHHHHHHHHHHH---HhCCCCEEEECCccCHHHHHHHHHcCC-------------------ceEEeCCCC
Confidence 457999999999999999994 445555555555556655555554443 245566679
Q ss_pred HHHHHHHHhcCCC-CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc---ccCCCccccccCCC--
Q 011959 233 VSALENLFENNKG-EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF---RLAYGGAQEYFGVT-- 306 (474)
Q Consensus 233 ~~~le~~l~~~~~-~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~---r~g~~~~~~~~g~~-- 306 (474)
+++|++.++++.+ ++++|++++++|++|.+.+ +++|.++|++||++||+||+|..+ +.+.. ..+.+++.
T Consensus 159 ~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~ 233 (398)
T 3a2b_A 159 MEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGAG-TASHFGLNDD 233 (398)
T ss_dssp HHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCC-HHHHHTCGGG
T ss_pred HHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCCCc-hHhhcCCCcC
Confidence 9999999986432 6789999999999999988 999999999999999999999644 22222 23445553
Q ss_pred Ccee--ehhhhcCC-CcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHH
Q 011959 307 PDLT--TLGKIIGG-GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQ 382 (474)
Q Consensus 307 pdi~--t~sK~l~~-G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~ 382 (474)
+|++ ++||.++. | ||+++++++++.+..... .+..+...++..++++.++|+.++. ++..++++++++++.+
T Consensus 234 ~di~~~s~sK~~~~~G---G~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 309 (398)
T 3a2b_A 234 VDLIMGTFSKSLASLG---GFVAGDADVIDFLKHNAR-SVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKA 309 (398)
T ss_dssp CSEEEEESSSTTCSSC---EEEEECHHHHHHHHHHCH-HHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred CeEEEecccccccCCC---cEEEeCHHHHHHHHHhcc-cceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 5777 89999983 5 999999999888763111 1233445667666677788887644 5788888899999999
Q ss_pred HHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-------cceEEecC-
Q 011959 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSLA- 454 (474)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~~~~~~~- 454 (474)
.|+++ ...+ .++.|.++++.+.. .....++.+.|+++||++.++.. ..+|+++.
T Consensus 310 ~L~~~--g~~~---~~~~g~~~~~~~~~-------------~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRis~~~ 371 (398)
T 3a2b_A 310 QLLDH--GFDL---GATESPILPIFIRS-------------NEKTFWVTKMLQDDGVFVNPVVSPAVPAEESLIRFSLMA 371 (398)
T ss_dssp HHHHT--TCCB---CSCCSSEEEEECCC-------------HHHHHHHHHHHHHTTEECEEECTTTSCGGGCEEEEECCT
T ss_pred HHHhc--CCCc---CCCCCCEEEEEcCC-------------HHHHHHHHHHHHHCCcEEEeeCCCCCCCCCceEEEEEeC
Confidence 98875 2222 23457888877631 22346788999999999988642 35788766
Q ss_pred -CcHHHHHHHHHHHHHHHhhC
Q 011959 455 -HSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 455 -~t~e~i~~~l~~l~~~~~~~ 474 (474)
++++++++++++|+++++++
T Consensus 372 ~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 372 THTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp TCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHh
Confidence 59999999999999998753
No 47
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=5.8e-35 Score=291.17 Aligned_cols=353 Identities=12% Similarity=0.060 Sum_probs=236.8
Q ss_pred CeEEEeeccCEEEEcC-CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCC-CCCHHHHHHHHHHHhhCC---CC
Q 011959 82 PIVFDSVKGSHMWDID-GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG-APCLLENVLAEMVISAVP---SI 155 (474)
Q Consensus 82 p~~~~~~~G~~~~d~d-G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~-~~~~~~~~la~~l~~~~~---~~ 155 (474)
+++..+++|+++||.+ |+++|||..+ .+..+.+|+|.+++.+++.++ ..|+ ...+++.++++++++.++ +.
T Consensus 6 ~~~~~~~~g~~~~d~~~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~ 82 (383)
T 3kax_A 6 KTVNRRGTHSIKWDTYKNEELIHAWIA---DMDFEVPQPIQTALKKRIEHPIFGYTLPPENIGDIICNWTKKQYNWDIQK 82 (383)
T ss_dssp -------------CCCSSSCCEECCCS---SCSSCCCHHHHHHHHHHHHSCCCCCCCCCTTHHHHHHHHHHHHHCCCCCG
T ss_pred ceeeccCCCceeeeccCCCCeeecccc---cCCCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCh
Confidence 5678899999999954 6899999988 444448999999999999874 2232 257889999999998865 56
Q ss_pred CeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHH
Q 011959 156 EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSA 235 (474)
Q Consensus 156 ~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~ 235 (474)
+++++++||++|++.+++.. ..++++|++.+++||+....+ ...|..+..++.....+ .+. -|+++
T Consensus 83 ~~v~~~~g~~~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~--------~~~---~d~~~ 148 (383)
T 3kax_A 83 EWIVFSAGIVPALSTSIQAF--TKENESVLVQPPIYPPFFEMV-TTNNRQLCVSPLQKQND--------TYA---IDFEH 148 (383)
T ss_dssp GGEEEESCHHHHHHHHHHHH--CCTTCEEEECSSCCHHHHHHH-HHTTCEEEECCCEEETT--------EEE---CCHHH
T ss_pred hhEEEcCCHHHHHHHHHHHh--CCCCCEEEEcCCCcHHHHHHH-HHcCCEEEeccceecCC--------cEE---EcHHH
Confidence 89999999999999999953 345678999999998865443 33343322211100000 011 18999
Q ss_pred HHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-cccc-----cCCCCc
Q 011959 236 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEY-----FGVTPD 308 (474)
Q Consensus 236 le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~-----~g~~pd 308 (474)
|++.+. +++++|+++.++|++|.+.+.++ +++|+++|++||++||+||+|++| +.|... .... .+..+.
T Consensus 149 l~~~l~---~~~~~v~i~~p~nptG~~~~~~~-l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~ 224 (383)
T 3kax_A 149 LEKQFQ---QGVKLMLLCSPHNPIGRVWKKEE-LTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTIT 224 (383)
T ss_dssp HHHHHT---TTCCEEEEESSBTTTTBCCCHHH-HHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEE
T ss_pred HHHHhC---cCCeEEEEeCCCCCCCcCcCHHH-HHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCcEEE
Confidence 999984 35677777777888998776554 999999999999999999999988 665321 1111 233344
Q ss_pred eeehhhhcC-CCcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHH
Q 011959 309 LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGI 384 (474)
Q Consensus 309 i~t~sK~l~-~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L 384 (474)
+.++||.++ +|+|+||+++ ++++++.+... ....++++.|+++++++.++|+..++ ++..++++++.+++.+.|
T Consensus 225 ~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 302 (383)
T 3kax_A 225 CMAPSKTFNIAGLQASIIIIPNEKLRQAFTSI--QYRQGFHGLNIFAYTAMQSAYTECNDWLNEIRFYIEDNAKFACEYI 302 (383)
T ss_dssp EECSHHHHTCGGGCCEEEECCCHHHHHHHHHH--HHHTTCCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEChhhccCcchhheEEEeCCHHHHHHHHHH--HhhcccCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 668999999 8999999988 68888877631 11233457899999999988864321 344555556666666666
Q ss_pred HHHhhhcCCeeEEeeecee-EEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCc
Q 011959 385 IDAGKKAGHAICGGYISGM-FGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHS 456 (474)
Q Consensus 385 ~~~~~~~~~~~~v~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t 456 (474)
++. .+.....++.+.+ +++.+.... ....++.+.|+ ++||++.++. ...+|+++..+
T Consensus 303 ~~~---~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~ 367 (383)
T 3kax_A 303 KDH---IPTLSVMKPEGSFLLWIDCSALN------------LSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIGCP 367 (383)
T ss_dssp HHH---CTTCEECCCSBSSEEEEECGGGC------------CCHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECSSC
T ss_pred Hhh---CCCceEecCCceEEEEEEccccC------------CCHHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEEcCC
Confidence 553 2222233444444 446664210 01257888888 6899998752 24679998899
Q ss_pred HHHHHHHHHHHHHHHh
Q 011959 457 SDDIQHTITAAEKVLR 472 (474)
Q Consensus 457 ~e~i~~~l~~l~~~~~ 472 (474)
++++++++++|++++.
T Consensus 368 ~~~i~~~l~~l~~~l~ 383 (383)
T 3kax_A 368 RSVLEEILNRLRHTFS 383 (383)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999998863
No 48
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=100.00 E-value=2.2e-35 Score=297.24 Aligned_cols=333 Identities=15% Similarity=0.109 Sum_probs=250.8
Q ss_pred EeeccCEEEEcCCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHhc-CCC------CCCCHHHHHHHHHHHhhCCCCCe
Q 011959 86 DSVKGSHMWDIDGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKKG-TSF------GAPCLLENVLAEMVISAVPSIEM 157 (474)
Q Consensus 86 ~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~-~~~------~~~~~~~~~la~~l~~~~~~~~~ 157 (474)
.++.+.+++|.+|++||||.++ +++|+ .||+|++++.+++++. ..+ .+..+...++++++++++ +.+.
T Consensus 46 ~~~~~~~~~~~~g~~~ld~~s~---~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g~~~ 121 (409)
T 3kki_A 46 KNGKHLVLGKQASPDDIILQSN---DYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT-GFDE 121 (409)
T ss_dssp TTSSCTTCCCCCCTTSEECCCS---CTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHH-TCSE
T ss_pred cCCCeeeeCCCCCCceEEeecc---CccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHh-CCCe
Confidence 3567778888999999999988 88888 6999999999999872 111 122344566777777777 5567
Q ss_pred EEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHH
Q 011959 158 VRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237 (474)
Q Consensus 158 v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le 237 (474)
.++++||++|+..+++ ++.++++.|+++..+|+.+...+...|. +++.++.+|+++|+
T Consensus 122 ~i~~~sGt~a~~~~l~---~~~~~gd~Vl~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d~~~le 179 (409)
T 3kki_A 122 CLLSQSGWNANVGLLQ---TICQPNTNVYIDFFAHMSLWEGARYANA-------------------QAHPFMHNNCDHLR 179 (409)
T ss_dssp EEEESCHHHHHHHHHH---HHCCTTCEEEEETTSCHHHHHHHHHTTC-------------------EEEEECTTCHHHHH
T ss_pred EEEecchHHHHHHHHH---HhcCCCCEEEECCCcCHHHHHHHHHcCC-------------------eEEEecCCCHHHHH
Confidence 7888999999999998 5566666666777777766655554443 34556667999999
Q ss_pred HHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC--c-ccCCCccccccCC--CCce--e
Q 011959 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG--F-RLAYGGAQEYFGV--TPDL--T 310 (474)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~-r~g~~~~~~~~g~--~pdi--~ 310 (474)
++++++ ++++|++++++|++|.+.+ +++|+++|++||++||+||+|++ + +.|..+. +.+++ .+|+ .
T Consensus 180 ~~l~~~--~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~-~~~~~~~~~di~~~ 252 (409)
T 3kki_A 180 MLIQRH--GPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGAGLL-AELGLTREVHFMTA 252 (409)
T ss_dssp HHHHHH--CSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHH-HHHTCGGGCSEEEE
T ss_pred HHHHhc--CCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCCcch-hhcCCCCCCCEEEe
Confidence 999853 3589999999999999998 99999999999999999999987 5 4554433 45666 4566 5
Q ss_pred ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhh
Q 011959 311 TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGK 389 (474)
Q Consensus 311 t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~ 389 (474)
|+||++++| .|++++++++++.+......+.. +.+.++++++++.++++.+++ +++.++++++++++++.|+++
T Consensus 253 s~sK~~~~~--gg~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 327 (409)
T 3kki_A 253 SLAKTFAYR--AGAIWCNNEVNRCVPFISYPAIF-SSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQL-- 327 (409)
T ss_dssp ESSSTTCSS--CEEEEESSSGGGTHHHHCHHHHH-SBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT--
T ss_pred ecchhhCCC--ceEEEECHHHHHHHHHhCcCccc-cCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc--
Confidence 899999965 69999999988877532112222 234788999999999998765 567788888888888888765
Q ss_pred hcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-------CcceEEec--CCcHHHH
Q 011959 390 KAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTSL--AHSSDDI 460 (474)
Q Consensus 390 ~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~~~~--~~t~e~i 460 (474)
++. +.+.+.++++.+.. .....++.+.|+++||++.+.. ...+|+++ .+|+++|
T Consensus 328 --g~~--~~~~~~~~~~~~~~-------------~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i 390 (409)
T 3kki_A 328 --GLT--IRSESQIIGLETGD-------------ERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQI 390 (409)
T ss_dssp --TCC--CCCSSSEEEEEEES-------------HHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHH
T ss_pred --CCc--cCCCCCEEEEEeCC-------------HHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHH
Confidence 221 23578888887742 1234578899999999986532 34567754 5799999
Q ss_pred HHHHHHHHHHHhh
Q 011959 461 QHTITAAEKVLRQ 473 (474)
Q Consensus 461 ~~~l~~l~~~~~~ 473 (474)
++++++|+++++.
T Consensus 391 ~~~~~~l~~~l~~ 403 (409)
T 3kki_A 391 AKIIEVCSDAVNY 403 (409)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999864
No 49
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=100.00 E-value=4.1e-34 Score=285.34 Aligned_cols=337 Identities=17% Similarity=0.199 Sum_probs=252.8
Q ss_pred CCeEEEeeccCEEEEcCCCEEEeccCChhhccCC-CCCHHHHHHHHHHHHh-cCC-----CC-CCCHHHHHHHHHHHhhC
Q 011959 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG-HADDQVLAALGETMKK-GTS-----FG-APCLLENVLAEMVISAV 152 (474)
Q Consensus 81 ~p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~~~~-~~~-----~~-~~~~~~~~la~~l~~~~ 152 (474)
.|+++.+++|+++| .+|++||||.++ .++| +.+|++++++.+++++ +.. +. +......++++.+++++
T Consensus 22 ~~~~~~~~~g~~~~-~~g~~~id~~~~---~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~ 97 (384)
T 1bs0_A 22 RRYPVAQGAGRWLV-ADDRQYLNFSSN---DYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL 97 (384)
T ss_dssp CCCCCSBCSSSEEE-ETTEEEEECSCC---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH
T ss_pred ccccccCCCCceEE-ECCceEEEeecc---CccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh
Confidence 37888999999999 799999999998 5588 5899999999999876 321 11 24577889999999988
Q ss_pred CCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCC
Q 011959 153 PSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232 (474)
Q Consensus 153 ~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d 232 (474)
+.++.++++||++|+..+++ .+.++++.|+++..+|+.+...+...|. +++.+|++|
T Consensus 98 -g~~~~i~~~sGt~a~~~~~~---~~~~~gd~v~~~~~~~~~~~~~~~~~g~-------------------~~~~~~~~d 154 (384)
T 1bs0_A 98 -GYSRALLFISGFAANQAVIA---AMMAKEDRIAADRLSHASLLEAASLSPS-------------------QLRRFAHND 154 (384)
T ss_dssp -TCSEEEEESCHHHHHHHHHH---HHCCTTCEEEEETTCCHHHHHHHHTSSS-------------------EEEEECTTC
T ss_pred -CCCcEEEeCCcHHHHHHHHH---HhCCCCcEEEEcccccHHHHHHHHHcCC-------------------CEEEeCCCC
Confidence 44578888899999999998 4566666677777778766555544332 355667779
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--ccCCCccccccCCCCce
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGVTPDL 309 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~~pdi 309 (474)
+++|++.+++.++++++|++++++|++|.+.+ +++|.++|++||++||+||+|. |+ +.+... .+.++..+|+
T Consensus 155 ~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~di 229 (384)
T 1bs0_A 155 VTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGS-CWLQKVKPEL 229 (384)
T ss_dssp HHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCH-HHHTTCCCSE
T ss_pred HHHHHHHHHhcCCCCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCCch-HHhcCCCCcE
Confidence 99999999865445789999999999999998 9999999999999999999995 43 233332 2456667888
Q ss_pred e--ehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Q 011959 310 T--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGI 384 (474)
Q Consensus 310 ~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L 384 (474)
+ ++||.++. +.||+++++++++.+...... ...+.+.|++.++++.++|+.+.+ ++..++++++++++.+.|
T Consensus 230 ~~~s~sK~~~~--~GG~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 306 (384)
T 1bs0_A 230 LVVTFGKGFGV--SGAAVLCSSTVADYLLQFARH-LIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGV 306 (384)
T ss_dssp EEEESSSTTSS--CCEEEEECHHHHHHHHHHCHH-HHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeccchhhc--cCcEEEeCHHHHHHHHHhchh-hhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 7 89999983 349999999998887632111 223447899999999999988763 456677777777777777
Q ss_pred HHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-------cceEEec--CC
Q 011959 385 IDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTSL--AH 455 (474)
Q Consensus 385 ~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~~~~~~--~~ 455 (474)
+++ ++.. .++.|.++++.+.. .....++.+.|.++||.+.++.. ..+|+++ .+
T Consensus 307 ~~~----g~~~-~~~~~~~~~~~~~~-------------~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~ 368 (384)
T 1bs0_A 307 QDL----PFTL-ADSCSAIQPLIVGD-------------NSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAH 368 (384)
T ss_dssp TTS----SCEE-CSCCSSBCCEEEES-------------HHHHHHHHHHHHHTTEECCEECTTSSCTTCEEECCBCCTTC
T ss_pred Hhc----CCcc-cCCCCCEEEEEeCC-------------HHHHHHHHHHHHHCCcEEEeecCCCCCCCCceEEEEEcCCC
Confidence 653 3221 13567777777631 12346788999999999987642 3466654 45
Q ss_pred cHHHHHHHHHHHHHH
Q 011959 456 SSDDIQHTITAAEKV 470 (474)
Q Consensus 456 t~e~i~~~l~~l~~~ 470 (474)
|++++++++++|+++
T Consensus 369 ~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 369 EMQDIDRLLEVLHGN 383 (384)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999875
No 50
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=4.1e-33 Score=278.77 Aligned_cols=352 Identities=13% Similarity=0.071 Sum_probs=229.6
Q ss_pred eEEEeeccCEEEEcCCC-----EEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCCC-CCH-HHHHHHHHHHhhCC-
Q 011959 83 IVFDSVKGSHMWDIDGN-----EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGA-PCL-LENVLAEMVISAVP- 153 (474)
Q Consensus 83 ~~~~~~~G~~~~d~dG~-----~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~-~~~-~~~~la~~l~~~~~- 153 (474)
++-.+++|+++||.+|+ ++|||..+. +.++ .+|+|.+++.+++++. ..|+. ..+ ++.++++++.+.++
T Consensus 7 ~~~~~~~~~~~~d~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~~lr~~la~~l~~~~g~ 83 (390)
T 1d2f_A 7 VVDRHGTWCTQWDYVADRFGTADLLPFTISD--MDFA-TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYT 83 (390)
T ss_dssp -----------------------CEECCSSS--CSSC-CCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCC
T ss_pred cccccCCCccchhhhccccCCCCeeEeeecC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHhcCC
Confidence 44578999999999998 789998774 3466 7899999999998753 22321 456 88888888877653
Q ss_pred --CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC
Q 011959 154 --SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231 (474)
Q Consensus 154 --~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 231 (474)
..++|++++||++|++.+++.. ..++++|++.+++||++...+. ..|..+..++.....+ .+. .
T Consensus 84 ~~~~~~v~~t~g~~~al~~~~~~l--~~~gd~vl~~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~--------~~~---~ 149 (390)
T 1d2f_A 84 AIDSQTVVYGPSVIYMVSELIRQW--SETGEGVVIHTPAYDAFYKAIE-GNQRTVMPVALEKQAD--------GWF---C 149 (390)
T ss_dssp CCCGGGEEEESCHHHHHHHHHHHS--SCTTCEEEEEESCCHHHHHHHH-HTTCEEEEEECEECSS--------SEE---C
T ss_pred CCCHHHEEEcCCHHHHHHHHHHHh--cCCCCEEEEcCCCcHHHHHHHH-HCCCEEEEeecccCCC--------ccc---c
Confidence 4678999999999999999952 2345789999999999655443 3343222211100000 000 3
Q ss_pred CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCC---
Q 011959 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP--- 307 (474)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~p--- 307 (474)
|+++|++.+++. ++++|+++.++|++|.+.+. +++++|.++|++||++||+||+|++| +.|.... ...++.+
T Consensus 150 d~~~l~~~l~~~--~~~~v~l~~p~nptG~~~~~-~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~-~~~~~~~~~~ 225 (390)
T 1d2f_A 150 DMGKLEAVLAKP--ECKIMLLCSPQNPTGKVWTC-DELEIMADLCERHGVRVISDEIHMDMVWGEQPHI-PWSNVARGDW 225 (390)
T ss_dssp CHHHHHHHHTST--TEEEEEEESSCTTTCCCCCT-THHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCC-CGGGTCCSSE
T ss_pred CHHHHHHHhccC--CCeEEEEeCCCCCCCcCcCH-HHHHHHHHHHHHcCCEEEEEccccccccCCCCCc-CHHHcchhhH
Confidence 899999999743 57777776667888988765 45999999999999999999999988 6554221 1122222
Q ss_pred c-eeehhhhcC-CCcceEEEEec-HHHHHhhcCCCCccc-ccCC-CCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHH
Q 011959 308 D-LTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQ-AGTL-SGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGEL 380 (474)
Q Consensus 308 d-i~t~sK~l~-~G~~iG~~~~~-~~i~~~~~~~~~~~~-~~t~-~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l 380 (474)
| +.++||.++ +|+|+||++++ +++++.+.. ... ..++ +.|+++++++.++|+..++ +...++++++.+++
T Consensus 226 d~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l 302 (390)
T 1d2f_A 226 ALLTSGSKSFNIPALTGAYGIIENSSSRDAYLS---ALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYI 302 (390)
T ss_dssp EEEECSHHHHTCGGGCCEEEEECSHHHHHHHHH---HHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hhccCccHhhcccChhheEEEECCHHHHHHHHH---HHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 3 779999999 89999999885 788887762 223 3455 7799999999999875322 33444555555666
Q ss_pred HHHHHHHhhhcCCeeEEeeece-eEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEe
Q 011959 381 TQGIIDAGKKAGHAICGGYISG-MFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTS 452 (474)
Q Consensus 381 ~~~L~~~~~~~~~~~~v~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~ 452 (474)
.+.|++. ++....+++.|. ++++.+.... ....++.+.|+ ++||++.++. ...+|++
T Consensus 303 ~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris 367 (390)
T 1d2f_A 303 ADKMNAA---FPELNWQIPQSTYLAWLDLRPLN------------IDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLN 367 (390)
T ss_dssp HHHHHHH---CSSCCCCCCSBCSEEEEECGGGC------------CCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEE
T ss_pred HHHHHhh---CCCCEEecCCccEEEEEEccccC------------CCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEE
Confidence 6665542 221222344454 4466663210 01256888888 6899998763 2467998
Q ss_pred cCCcHHHHHHHHHHHHHHHhh
Q 011959 453 LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 453 ~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+..+++++++++++|++++++
T Consensus 368 ~~~~~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 368 AGCPRSKLEKGVAGLINAIRA 388 (390)
T ss_dssp CCSCHHHHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHHHHHh
Confidence 888999999999999999875
No 51
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=3.8e-34 Score=286.03 Aligned_cols=352 Identities=12% Similarity=0.065 Sum_probs=247.1
Q ss_pred CeEEEeeccCEEEEcCCCEE-----EeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC-CCCHHHHHHHHHHHhhCC-
Q 011959 82 PIVFDSVKGSHMWDIDGNEY-----IDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG-APCLLENVLAEMVISAVP- 153 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~-----iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~-~~~~~~~~la~~l~~~~~- 153 (474)
.++..+++|+++||.+|++| |||..+ .+..+.+|+|++++.+++.+.. .|+ +..+++.++++++++.++
T Consensus 10 ~~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~ 86 (391)
T 4dq6_A 10 EIVDRSNNFSSKWSEMEKKYGTNDLLPMWVA---DMDFKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNW 86 (391)
T ss_dssp SCCCCTTTTBHHHHCHHHHHSCSCSEECCSS---SCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCC
T ss_pred cccccccCCceeeeecccccCCCCceecccc---CCCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 45567899999999987555 999887 5555679999999999997642 222 356788999999998764
Q ss_pred --CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCC-CCCCCCCCCCCceEEccC
Q 011959 154 --SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLP-DSPGVPKGATYETLTAPF 230 (474)
Q Consensus 154 --~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~-~~~g~~~~~~~~~~~~~~ 230 (474)
+.+++++++||++|++.+++.. ..++++|++.+++||+....+. ..|..+..++.. ...+ .+.+
T Consensus 87 ~~~~~~v~~~~g~~~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~--------~~~~-- 153 (391)
T 4dq6_A 87 KIKSEWLIYSPGVIPAISLLINEL--TKANDKIMIQEPVYSPFNSVVK-NNNRELIISPLQKLENG--------NYIM-- 153 (391)
T ss_dssp CCCGGGEEEESCHHHHHHHHHHHH--SCTTCEEEECSSCCTHHHHHHH-HTTCEEEECCCEECTTS--------CEEC--
T ss_pred CCcHHHeEEcCChHHHHHHHHHHh--CCCCCEEEEcCCCCHHHHHHHH-HcCCeEEeeeeeecCCC--------ceEe--
Confidence 4679999999999999999953 3456789999999998654433 334333222111 0011 1111
Q ss_pred CCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-ccccc-----
Q 011959 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYF----- 303 (474)
Q Consensus 231 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~----- 303 (474)
|+++|++.+++ +++|+++.++|++|.+.+..+ +++|+++|++||++||+||+|++| +.|... ....+
T Consensus 154 -d~~~l~~~l~~----~~~v~i~~p~nptG~~~~~~~-l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 227 (391)
T 4dq6_A 154 -DYEDIENKIKD----VKLFILCNPHNPVGRVWTKDE-LKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFE 227 (391)
T ss_dssp -CHHHHHHHCTT----EEEEEEESSBTTTTBCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred -eHHHHHHHhhc----CCEEEEECCCCCCCcCcCHHH-HHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCcccc
Confidence 89999999873 777888777888998876555 999999999999999999999988 655321 22111
Q ss_pred CCCCceeehhhhcC-CCcceEEEEecH-HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHH
Q 011959 304 GVTPDLTTLGKIIG-GGLPVGAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGE 379 (474)
Q Consensus 304 g~~pdi~t~sK~l~-~G~~iG~~~~~~-~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~ 379 (474)
+....+.++||.++ +|+|+||+++++ ++++.+... ....++++.|+++++++.++|+..++ +...++++++.++
T Consensus 228 ~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 305 (391)
T 4dq6_A 228 KNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDA--FTRIDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDF 305 (391)
T ss_dssp HTEEEEECSHHHHTCGGGCCEEEECCSHHHHHHHHHH--HHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEechhhccCcccceEEEEeCCHHHHHHHHHH--HHhhcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 11233458999998 799999998875 888877631 12334668899999999999886321 3344555555556
Q ss_pred HHHHHHHHhhhcCCeeEEeeeceeE-EEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC------CcceEE
Q 011959 380 LTQGIIDAGKKAGHAICGGYISGMF-GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFT 451 (474)
Q Consensus 380 l~~~L~~~~~~~~~~~~v~~~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~------~~~~~~ 451 (474)
+.+.|++. .+....+++.+.++ ++.+.... ....++.+.|+++ ||++.++. ...+|+
T Consensus 306 l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi 370 (391)
T 4dq6_A 306 AIKYINEN---MPKLKVRKPEGTYLLWVDFSALG------------LSDEELESILVQKGKVALNQGNSFGIGGSGYQRI 370 (391)
T ss_dssp HHHHHHHH---CTTSEECCCSBSSEEEEECGGGC------------CCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEE
T ss_pred HHHHHHhh---CCCCEecCCCccEEEEEEhhhcC------------CCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEE
Confidence 66555543 22223334455544 46664211 0125788899988 99998752 246889
Q ss_pred ecCCcHHHHHHHHHHHHHHHh
Q 011959 452 SLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 452 ~~~~t~e~i~~~l~~l~~~~~ 472 (474)
++.++++++++++++|+++++
T Consensus 371 s~~~~~~~i~~~l~~l~~~l~ 391 (391)
T 4dq6_A 371 NLACPRSMLEEALIRIKNAIN 391 (391)
T ss_dssp ECCSCHHHHHHHHHHHHHHHC
T ss_pred EEcCCHHHHHHHHHHHHHHhC
Confidence 888999999999999999873
No 52
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=100.00 E-value=1.8e-32 Score=277.64 Aligned_cols=354 Identities=13% Similarity=0.058 Sum_probs=240.3
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHh----cCCCCC---CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKK----GTSFGA---PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEAC 168 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~----~~~~~~---~~~~~~~la~~l~~~~~---~~~-~v~~~~sGseA~ 168 (474)
.+|||..+. ..+| .+|.+++++.+++++ ...|+. ..+++.++++++.+.++ +.+ +|++++||++|+
T Consensus 38 ~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~ 114 (429)
T 1yiz_A 38 KPLNLGQGF--PDYH-APKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEAL 114 (429)
T ss_dssp CCEECCSSS--CSSC-CCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHH
T ss_pred CEEEecCCC--CCCC-CCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHH
Confidence 578888875 3556 689999999999875 123322 34677788888876543 467 999999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC-CCHHHHHHHHhcCCCCe
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNKGEI 247 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~ 247 (474)
+.+++.. ...+++|++.+++||+....+ ...|..+..++....... .......+ .|+++|++.++ +++
T Consensus 115 ~~~~~~~--~~~gd~Vl~~~p~y~~~~~~~-~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~l~~~l~---~~~ 183 (429)
T 1yiz_A 115 YATIQGH--VDEGDEVIIIEPFFDCYEPMV-KAAGGIPRFIPLKPNKTG-----GTISSADWVLDNNELEALFN---EKT 183 (429)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCTTHHHHH-HHTTCEEEEEECBCCCSS-----SSEEGGGCBCCHHHHHHHCC---TTE
T ss_pred HHHHHHh--cCCCCEEEEcCCCchhHHHHH-HHcCCEEEEEeCCccccc-----ccccccCcccCHHHHHHHhc---cCc
Confidence 9999953 334678999999999965543 334443322211110000 00000111 38999999885 368
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-cccc----ccCCCCceeehhhhcC-CCc
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQE----YFGVTPDLTTLGKIIG-GGL 320 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~----~~g~~pdi~t~sK~l~-~G~ 320 (474)
++|++++++|++|.+.+ ++++++|+++|++||++||+||+|++| +.|.. .... ..+..+++.++||.++ +|+
T Consensus 184 ~~v~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~ 262 (429)
T 1yiz_A 184 KMIIINTPHNPLGKVMD-RAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGW 262 (429)
T ss_dssp EEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGG
T ss_pred eEEEECCCCCCCCccCC-HHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCc
Confidence 88888888888998775 566999999999999999999999988 65531 1111 2334455678999999 799
Q ss_pred ceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHhhhcCCee
Q 011959 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-----LKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (474)
|+||+++++++++.+. ......+++.|+++++++.++|+. ...+++.+++++..+..++.|.+.+.++++..
T Consensus 263 r~G~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 339 (429)
T 1yiz_A 263 KIGWAYGPEALLKNLQ---MVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAEVGMNP 339 (429)
T ss_dssp CCEEEESCHHHHHHHH---HHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred ceEEEEeCHHHHHHHH---HHHhhcccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 9999999999998886 333456788999999999999987 43345555555444444444444433345444
Q ss_pred EEeeeceeEEEEEecCCCc-CcccccccchHHHHHHHHHHH-HCCeEecccC-----------CcceEEecCCcHHHHHH
Q 011959 396 CGGYISGMFGFFFTEGPVY-NFEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------FEAGFTSLAHSSDDIQH 462 (474)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~-----------~~~~~~~~~~t~e~i~~ 462 (474)
..+..|.++++.+...... .+.. ........++.+.|+ ++||++.++. ...+|+++..++++|++
T Consensus 340 ~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i~~ 417 (429)
T 1yiz_A 340 TVPQGGYFMVADWSSLDSKVDLTQ--ETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFFKKDENLQK 417 (429)
T ss_dssp EECSBSSEEEEECCSSCTTTTCCS--SSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEEEEECCSCHHHHHH
T ss_pred cCCCcceEEEEEcccccccccccc--cccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeEEEEecCCHHHHHH
Confidence 3444577888887532000 0000 000012356778776 7899998752 34678888889999999
Q ss_pred HHHHHHHHHhh
Q 011959 463 TITAAEKVLRQ 473 (474)
Q Consensus 463 ~l~~l~~~~~~ 473 (474)
++++|++++++
T Consensus 418 ~l~~l~~~l~~ 428 (429)
T 1yiz_A 418 AAEILRKWKGS 428 (429)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHHhccC
Confidence 99999998764
No 53
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=100.00 E-value=1.6e-33 Score=282.65 Aligned_cols=353 Identities=14% Similarity=0.089 Sum_probs=240.5
Q ss_pred eEEEeeccCEEEEcCCC-------EEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCCC-CCHHHHHHHHHHHhhCC
Q 011959 83 IVFDSVKGSHMWDIDGN-------EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGA-PCLLENVLAEMVISAVP 153 (474)
Q Consensus 83 ~~~~~~~G~~~~d~dG~-------~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~-~~~~~~~la~~l~~~~~ 153 (474)
++..+++|+++||.+|+ ++|||..+. +.++ .+|.|.+++.+++.+. ..|+. ..+++.++++++.+.++
T Consensus 8 ~~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g 84 (399)
T 1c7n_A 8 KISRKNLGSLKWDLMYSQNPEVGNEVVPLSVAD--MEFK-NPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQ 84 (399)
T ss_dssp CCCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSS--CSSC-CCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHC
T ss_pred cccccCCCccccccchhhccccCCCceeeeecC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHhC
Confidence 44568999999998884 789998774 3344 6899999999998763 22321 34667777777766543
Q ss_pred ---CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC
Q 011959 154 ---SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230 (474)
Q Consensus 154 ---~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~ 230 (474)
..++|++++||++|++.+++.. ..++++|++.+++||++...+. ..|..+..++.....+ .+.
T Consensus 85 ~~~~~~~v~~t~g~~~a~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~g--------~~~--- 150 (399)
T 1c7n_A 85 WDIQTDWIINTAGVVPAVFNAVREF--TKPGDGVIIITPVYYPFFMAIK-NQERKIIECELLEKDG--------YYT--- 150 (399)
T ss_dssp CCCCGGGEEEESSHHHHHHHHHHHH--CCTTCEEEECSSCCTHHHHHHH-TTTCEEEECCCEEETT--------EEE---
T ss_pred CCCChhhEEEcCCHHHHHHHHHHHh--cCCCCEEEEcCCCcHhHHHHHH-HcCCEEEecccccCCC--------CEE---
Confidence 4678999999999999999942 2345789999999999654433 3343222211100000 111
Q ss_pred CCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-cccccc-----
Q 011959 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF----- 303 (474)
Q Consensus 231 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~----- 303 (474)
.|+++|++.+++. ++++|+++.++|++|.+.+ .+++++|+++|++||++||+||+|++| +.+.. .....+
T Consensus 151 ~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 227 (399)
T 1c7n_A 151 IDFQKLEKLSKDK--NNKALLFCSPHNPVGRVWK-KDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLA 227 (399)
T ss_dssp CCHHHHHHHHTCT--TEEEEEEESSBTTTTBCCC-HHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHH
T ss_pred EcHHHHHHHhccC--CCcEEEEcCCCCCCCcCcC-HHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCcccc
Confidence 2899999999742 5788888777788888765 556999999999999999999999988 65532 222221
Q ss_pred CCCCceeehhhhcC-CCcceEEEEec-HHHHHhhcCCCCcccccCC-CCChHHHHHHHHHHHHhcC--CCHHHHHHHHHH
Q 011959 304 GVTPDLTTLGKIIG-GGLPVGAYGGR-RDIMEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLKE--PGTYEYLNKITG 378 (474)
Q Consensus 304 g~~pdi~t~sK~l~-~G~~iG~~~~~-~~i~~~~~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~ 378 (474)
+....+.++||.++ +|+|+||++++ +++++.+.. .....++ +.|+++++++.++|+...+ +...++++++.+
T Consensus 228 ~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 304 (399)
T 1c7n_A 228 DKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTK---SRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQR 304 (399)
T ss_dssp TTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHH---HHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeChhhccccchheEEEEECCHHHHHHHHH---HHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 22233558999999 89999999986 678887763 2222333 5789999999999875321 334444555555
Q ss_pred HHHHHHHHHhhhcCCeeEEeeecee-EEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceE
Q 011959 379 ELTQGIIDAGKKAGHAICGGYISGM-FGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGF 450 (474)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~g~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~ 450 (474)
++.+.|++. ++....+++.|.+ +++.+.... ....++.+.|+ ++||++.++. ...+|
T Consensus 305 ~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iR 369 (399)
T 1c7n_A 305 IVKDFFEVN---HPEIKAPLIEGTYLQWIDFRALK------------MDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFER 369 (399)
T ss_dssp HHHHHHHHH---CTTSBCCCCSBSSEEEEECGGGC------------CCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEE
T ss_pred HHHHHHHhh---CCCCeEecCCceEEEEEEcccCC------------CCHHHHHHHHHHhCCEEEeCccccCCCCCCeEE
Confidence 555555542 2212223445554 456664210 01256888887 6899998763 24678
Q ss_pred EecCCcHHHHHHHHHHHHHHHhh
Q 011959 451 TSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 451 ~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+++..+++++++++++|++++++
T Consensus 370 is~~~~~~~l~~~l~~l~~~l~~ 392 (399)
T 1c7n_A 370 INLAAPSSVIQESLERLNKALKD 392 (399)
T ss_dssp EECCSCHHHHHHHHHHHHHHHHH
T ss_pred EEeccCHHHHHHHHHHHHHHHHH
Confidence 98888899999999999998865
No 54
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=100.00 E-value=2.4e-32 Score=270.13 Aligned_cols=339 Identities=15% Similarity=0.108 Sum_probs=228.3
Q ss_pred CeEEEeeccCEEEE-cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEE
Q 011959 82 PIVFDSVKGSHMWD-IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVR 159 (474)
Q Consensus 82 p~~~~~~~G~~~~d-~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~ 159 (474)
++++.+|.+.+.++ .+|+++|||.+|. ++++ .+|+|++++.+++++...| +.....++.++++++++ ..++++
T Consensus 8 ~~~~~~g~~~~~~~~~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~l~~~la~~~~~~~~~i~ 82 (361)
T 3ftb_A 8 GDLMIHGGDIYTEGVFKGRELLDYSSNI--NPLG-IPKSFLNNIDEGIKNLGVY--PDVNYRRLNKSIENYLKLKDIGIV 82 (361)
T ss_dssp --------------------CEETTCCC--CTTC-SCHHHHTTHHHHHHGGGSC--CCTTCHHHHHHHHHHHTCCSCEEE
T ss_pred CccccCCCCHHHHhhcCCCCEEEecCCC--CCCC-CCHHHHHHHHHHHHHhcCC--CCccHHHHHHHHHHHhCCCcceEE
Confidence 45555555555444 4899999999986 4555 6899999999999875433 44445677777777776 578999
Q ss_pred EeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHH
Q 011959 160 FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239 (474)
Q Consensus 160 ~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~ 239 (474)
+++||++|++.+++. + ++|++.+++||+....+. ..|..+...+.....++ +++++++.
T Consensus 83 ~~~g~t~al~~~~~~---~---d~vi~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~--------------~~~~l~~~ 141 (361)
T 3ftb_A 83 LGNGASEIIELSISL---F---EKILIIVPSYAEYEINAK-KHGVSVVFSYLDENMCI--------------DYEDIISK 141 (361)
T ss_dssp EESSHHHHHHHHHTT---C---SEEEEEESCCTHHHHHHH-HTTCEEEEEECCTTSCC--------------CHHHHHHH
T ss_pred EcCCHHHHHHHHHHH---c---CcEEEecCChHHHHHHHH-HcCCeEEEeecCcccCC--------------CHHHHHHh
Confidence 999999999999984 3 899999999998654433 33432222111111111 67899988
Q ss_pred HhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee---ehhhh
Q 011959 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT---TLGKI 315 (474)
Q Consensus 240 l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~---t~sK~ 315 (474)
+++ +++|+++.++|++|.+.+.++ +++|+++|++||++||+||+|++| +..........+..++++ ++||.
T Consensus 142 l~~----~~~v~i~~p~nptG~~~~~~~-l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 216 (361)
T 3ftb_A 142 IDD----VDSVIIGNPNNPNGGLINKEK-FIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKF 216 (361)
T ss_dssp TTT----CSEEEEETTBTTTTBCCCHHH-HHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSST
T ss_pred ccC----CCEEEEeCCCCCCCCCCCHHH-HHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhh
Confidence 873 566666666788888876555 999999999999999999999988 542223333334334433 79999
Q ss_pred cC-CCcceEEEE-ecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011959 316 IG-GGLPVGAYG-GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGH 393 (474)
Q Consensus 316 l~-~G~~iG~~~-~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (474)
++ +|+|+||++ +++++++.+... ..+++.|+++++++.++|+. .+..++.++..+..++.|.+.+.+++.
T Consensus 217 ~~~~G~r~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~ 288 (361)
T 3ftb_A 217 FAMPGIRFGYGITNNKEIAAKIKAK-----QNPWNINCFAEMAAINCLKD---TNYIEESLLWIKKERKRFIEELNKIGF 288 (361)
T ss_dssp TSCGGGCCEEEEESCHHHHHHHHTT-----SCTTCSCHHHHHHHHHTSSC---HHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred cCCCCcceeEEEeCCHHHHHHHHhh-----CCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99 799999998 999999988742 23578899999999888863 233444444444444445444444554
Q ss_pred ee-EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC------CcceEEecCCcHHHHHHHHHH
Q 011959 394 AI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITA 466 (474)
Q Consensus 394 ~~-~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~ 466 (474)
.. ..++.|.++++.+... ...++.+.|.++||++.++. ...+|+++. ++++++++++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~ 353 (361)
T 3ftb_A 289 IKRVFSPHANFVLCRLENI--------------SGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK-DEKKNTKFLRA 353 (361)
T ss_dssp EEEEECCSSSEEEEEESSS--------------CHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHH
T ss_pred CceecCCCCeEEEEEcCCC--------------CHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC-CHHHHHHHHHH
Confidence 44 5677888888877431 12578899999999998863 245788765 88889999999
Q ss_pred HHHHHhhC
Q 011959 467 AEKVLRQI 474 (474)
Q Consensus 467 l~~~~~~~ 474 (474)
|+++.+.+
T Consensus 354 l~~~~~~l 361 (361)
T 3ftb_A 354 LKGVENNL 361 (361)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhcC
Confidence 98887653
No 55
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=100.00 E-value=4.8e-33 Score=278.71 Aligned_cols=347 Identities=11% Similarity=0.007 Sum_probs=242.1
Q ss_pred CeEEEeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHHhhCC----C
Q 011959 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVISAVP----S 154 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~---~~~~~~~~la~~l~~~~~----~ 154 (474)
|+....+.+.+++|.+|+++|||.+|. ..++ .+|.|++++.++++....|+ +..+++.++++++.+.++ .
T Consensus 13 ~~~~~~~~~~~~~~~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~ 89 (396)
T 3jtx_A 13 PFARLHEAMQGISAPEGMEAVPLHIGE--PKHP-TPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVD 89 (396)
T ss_dssp HHHHHHHHTTTCCCCTTCCCEECSCCS--CCSC-CCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHHTTTCCCC
T ss_pred hHHHHHHHHHhhhhccCCCeEEeCCcC--CCCC-CCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHhcCCCCCC
Confidence 444456677778899999999999985 3444 68999999999886544443 245788899999988764 2
Q ss_pred CC-eEEEeCCHHHHHHHHHHHhHhhcCC----cEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEcc
Q 011959 155 IE-MVRFVNSGTEACMGVLRLARAFTGR----ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229 (474)
Q Consensus 155 ~~-~v~~~~sGseA~~~al~~ar~~~~~----~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~ 229 (474)
.+ ++++++||++|++.+++.... .++ +.|++.+++||++...+ ...|..+..++. ...++.
T Consensus 90 ~~~~i~~t~g~~~al~~~~~~~~~-~g~~~~~d~vl~~~p~~~~~~~~~-~~~g~~~~~v~~-~~~g~~----------- 155 (396)
T 3jtx_A 90 ADNEILPVLGSREALFSFVQTVLN-PVSDGIKPAIVSPNPFYQIYEGAT-LLGGGEIHFANC-PAPSFN----------- 155 (396)
T ss_dssp TTTSEEEESSHHHHHHHHHHHHCC-C---CCCCEEEEEESCCHHHHHHH-HHTTCEEEEEEC-CTTTCC-----------
T ss_pred CCCeEEEcCCcHHHHHHHHHHHhC-CCCccCCCEEEEcCCCcHhHHHHH-HHcCCEEEEeec-CCCCCc-----------
Confidence 67 999999999999999995321 222 68999999999865533 334443322211 111110
Q ss_pred CCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC-CCcccc------
Q 011959 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-YGGAQE------ 301 (474)
Q Consensus 230 ~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g-~~~~~~------ 301 (474)
-|+++|++.+++ ++++|+++.++|++|.+.+.++ +++|.++|++||++||+||+|++| +.+ ......
T Consensus 156 -~d~~~l~~~~~~---~~~~v~l~~p~nptG~~~~~~~-l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 230 (396)
T 3jtx_A 156 -PDWRSISEEVWK---RTKLVFVCSPNNPSGSVLDLDG-WKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQL 230 (396)
T ss_dssp -CCGGGSCHHHHH---TEEEEEEESSCTTTCCCCCHHH-HHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHT
T ss_pred -cCHHHHHHhhcc---CcEEEEEECCCCCCCCcCCHHH-HHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhc
Confidence 167888888874 5778887777888998887666 999999999999999999999988 655 232221
Q ss_pred --ccCCCCceeehhhhcC-CCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 011959 302 --YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITG 378 (474)
Q Consensus 302 --~~g~~pdi~t~sK~l~-~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~ 378 (474)
..+..+++.+|||+++ +|+|+||+++++++++.+. ......+++.|+++++++.++|+. ++..++.++..+
T Consensus 231 ~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~ 304 (396)
T 3jtx_A 231 GRSRQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFL---LYRTYHGSAMSIPVQRASIAAWDD---EQHVIDNRRLYQ 304 (396)
T ss_dssp TCCCTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHH---HHHHHHTCCCCHHHHHHHHHHHHC---CHHHHHHHHHHH
T ss_pred ccccCcEEEEeccccccCCcccceEEEEeCHHHHHHHH---HHHhhcccCCCHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 1344455668999987 6999999999999998886 333455778899999999998873 333333333333
Q ss_pred HHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------------
Q 011959 379 ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------------ 445 (474)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------------ 445 (474)
..++.+.+.+.++ .....+..|.++++.+... ....+.+.|+ ++||++.++.
T Consensus 305 ~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~ 369 (396)
T 3jtx_A 305 EKFERVIPILQQV-FDVKLPDASFYIWLKVPDG--------------DDLAFARNLWQKAAIQVLPGRFLARDTEQGNPG 369 (396)
T ss_dssp HHHHHHHHHHTTT-SCCCCCSSSSEEEEECTTS--------------CHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTT
T ss_pred HHHHHHHHHHHhc-CCccCCCeeEEEEEECCCC--------------CHHHHHHHHHHHCCEEEeCChHhCCcccccCCC
Confidence 3333333333332 1122234567777776421 1246777775 5699997752
Q ss_pred CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 446 FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 446 ~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
...+|+++..+++++++++++|++++
T Consensus 370 ~~~iRis~~~~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 370 EGYVRIALVADVATCVKAAEDIVSLY 395 (396)
T ss_dssp TTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 24678888889999999999999875
No 56
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=5.5e-33 Score=279.21 Aligned_cols=356 Identities=10% Similarity=0.081 Sum_probs=234.7
Q ss_pred eEEEeeccCEEEEcCCC---EEEeccCChhhccCCC-CCHHHHHHHHHHHHhcC--CC---CCCCHHHHHHHHHHHhhCC
Q 011959 83 IVFDSVKGSHMWDIDGN---EYIDYVGSWGPAIIGH-ADDQVLAALGETMKKGT--SF---GAPCLLENVLAEMVISAVP 153 (474)
Q Consensus 83 ~~~~~~~G~~~~d~dG~---~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~--~~---~~~~~~~~~la~~l~~~~~ 153 (474)
.++..++|.++++.+++ ++|||.+| ++.+. .+|+|++|+.+++++.. .| .+..+++.++++++++.++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~id~~~g---~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g 96 (407)
T 3nra_A 20 EVRQSAAGLEALIRGAPIEGRPVDFSHG---DVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTG 96 (407)
T ss_dssp -------CCTTTCCSCCCCSCCEETTSC---CTTTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhHHHhhcCCCCCceeeecCc---CCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhC
Confidence 34677888887755555 59999987 55543 68999999999987531 12 2346788999999998875
Q ss_pred C---C-CeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEcc
Q 011959 154 S---I-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229 (474)
Q Consensus 154 ~---~-~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~ 229 (474)
. . +++++++||++|++.+++. ...+++.|++.+++|+++... +...|..+..++......- .+..
T Consensus 97 ~~~~~~~~i~~~~g~~~a~~~~~~~--l~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-----~~~~--- 165 (407)
T 3nra_A 97 APVDARDGLIITPGTQGALFLAVAA--TVARGDKVAIVQPDYFANRKL-VEFFEGEMVPVQLDYVSAD-----ETRA--- 165 (407)
T ss_dssp SCCCTTTSEEEESHHHHHHHHHHHT--TCCTTCEEEEEESCCTHHHHH-HHHTTCEEEEEEBCCCSSC-----CSSC---
T ss_pred CCCCCCCcEEEeCCcHHHHHHHHHH--hCCCCCEEEEcCCcccchHHH-HHHcCCEEEEeeccccccc-----CcCC---
Confidence 2 3 7999999999999999984 234567888889998875433 3334433222111000000 0000
Q ss_pred CCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccccccC---
Q 011959 230 FNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFG--- 304 (474)
Q Consensus 230 ~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g--- 304 (474)
.-|+++|++.+++ ++++|+++.++|++|.+.+. +++++|.++|++||++||+||+|++| +.+.. .....++
T Consensus 166 ~~d~~~l~~~l~~---~~~~v~~~~p~nptG~~~~~-~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~ 241 (407)
T 3nra_A 166 GLDLTGLEEAFKA---GARVFLFSNPNNPAGVVYSA-EEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVD 241 (407)
T ss_dssp CBCHHHHHHHHHT---TCCEEEEESSCTTTCCCCCH-HHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSC
T ss_pred CcCHHHHHHHHhh---CCcEEEEcCCCCCCCcccCH-HHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCccc
Confidence 0189999999985 45666666667888887754 45999999999999999999999988 65532 2222222
Q ss_pred --CCCceeehhhhcC-CCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 011959 305 --VTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELT 381 (474)
Q Consensus 305 --~~pdi~t~sK~l~-~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~ 381 (474)
...++.++||+++ +|+|+||+++++++++.+. ......+++.++++++++.++|+. ..+..++..+..+.++
T Consensus 242 ~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~ 316 (407)
T 3nra_A 242 AENVVTIMGPSKTESLSGYRLGVAFGSRAIIARME---KLQAIVSLRAAGYSQAVLRGWFDE--APGWMEDRIARHQAIR 316 (407)
T ss_dssp GGGEEEEECSSSTTCCGGGCCEEEEECHHHHHHHH---HHHHHHTSSSCHHHHGGGGGTTCC--CTTHHHHHHHHHHHHH
T ss_pred CCcEEEEeCcccccCCCeeeEEEEEcCHHHHHHHH---HHHhhhccCCChHHHHHHHHHHhc--cchHHHHHHHHHHHHH
Confidence 2234558999999 8999999999999998886 333445677788888887777652 1344444444444444
Q ss_pred HHHHHHhhhcCCeeEEe-eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC------CcceEEec
Q 011959 382 QGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSL 453 (474)
Q Consensus 382 ~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~~~~~ 453 (474)
+.|.+.+.+++....+. ..|.++++.+.... ....++.+.|++ +||++.++. ...+|+++
T Consensus 317 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~ 384 (407)
T 3nra_A 317 DELLHVLRGCEGVFARTPQAGSYLFPRLPKLA------------VAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNF 384 (407)
T ss_dssp HHHHHHHHTSTTCBCCCCSBSSEECCBCCCBS------------SCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEEC
T ss_pred HHHHHHHhcCCCceeccCCeeEEEEEeCCCCC------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEe
Confidence 44444444443222223 33466666553211 112567788875 599998753 34678988
Q ss_pred CCcHHHHHHHHHHHHHHHhh
Q 011959 454 AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 454 ~~t~e~i~~~l~~l~~~~~~ 473 (474)
..++++|++++++|++++++
T Consensus 385 ~~~~~~i~~~~~~l~~~~~~ 404 (407)
T 3nra_A 385 SQDHEAAVAAARRIVTLVER 404 (407)
T ss_dssp CSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999999875
No 57
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=100.00 E-value=7.1e-32 Score=266.05 Aligned_cols=334 Identities=12% Similarity=0.040 Sum_probs=238.4
Q ss_pred eccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHH
Q 011959 88 VKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTE 166 (474)
Q Consensus 88 ~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGse 166 (474)
.+|.++++.+|+++|||.+|. ++++ .+|+|++++.+++++. ..++.....+|.++++++++ ..+++++++||++
T Consensus 5 ~~~~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~--~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~ 79 (354)
T 3ly1_A 5 PESAAFTAPSTDNPIRINFNE--NPLG-MSPKAQAAARDAVVKA--NRYAKNEILMLGNKLAAHHQVEAPSILLTAGSSE 79 (354)
T ss_dssp ----CCCCCCSSSCEECSSCC--CSSC-CCHHHHHHHHHTGGGT--TSCCHHHHHHHHHHHHHHTTSCGGGEEEESHHHH
T ss_pred cccccccCCCCCceEEccCCC--CCCC-CCHHHHHHHHHHHhhC--cCCCCCchHHHHHHHHHHhCCChHHEEEeCChHH
Confidence 456778889999999999885 4555 7899999999988763 33466677899999999986 4689999999999
Q ss_pred HHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCC
Q 011959 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (474)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (474)
|++.+++.. ...+++|++.+++|+++...+ ...|..+..++.....++ |+++|++.++++ ++
T Consensus 80 a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~--------------d~~~l~~~l~~~-~~ 141 (354)
T 3ly1_A 80 GIRAAIEAY--ASLEAQLVIPELTYGDGEHFA-KIAGMKVTKVKMLDNWAF--------------DIEGLKAAVAAY-SG 141 (354)
T ss_dssp HHHHHHHHH--CCTTCEEEEESSSCTHHHHHH-HHTTCEEEEECCCTTSCC--------------CHHHHHHHHHTC-SS
T ss_pred HHHHHHHHH--hCCCCeEEECCCCchHHHHHH-HHcCCEEEEecCCCCCCC--------------CHHHHHHHhccC-CC
Confidence 999999952 245678999999998854433 333432222111111111 899999999853 25
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccccc---c-CCCCceeehhhhcC-CC
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEY---F-GVTPDLTTLGKIIG-GG 319 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~---~-g~~pdi~t~sK~l~-~G 319 (474)
+++|+++.++|++|.+.+.++ +.+|+++| +||++||+||+|.+| +.+.. ..... + +....+.++||.++ +|
T Consensus 142 ~~~v~l~~p~nptG~~~~~~~-l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G 219 (354)
T 3ly1_A 142 PSIVYLVNPNNPTGTITPADV-IEPWIASK-PANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAG 219 (354)
T ss_dssp CEEEEEESSCTTTCCCCCHHH-HHHHHHTC-CTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGG
T ss_pred CCEEEEeCCCCCcCCCcCHHH-HHHHHHhC-CCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChh
Confidence 788888777888998887544 67777777 699999999999988 55432 11111 1 33334458999999 89
Q ss_pred cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe
Q 011959 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (474)
Q Consensus 320 ~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (474)
+|+||+++++++++.+.... ..++.|+++++++.++|+..+. ++..++++++.+++.+.|++. ++. ..+
T Consensus 220 ~r~G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~-~~~ 289 (354)
T 3ly1_A 220 MRVGYAVAHPTVIALMGRYV-----AGEKINFSGVDAALASMNDSAFITYSKKSNDVSRQILLKALEDL----KLP-YLP 289 (354)
T ss_dssp GCCEEEECCHHHHHHHGGGT-----TCSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH----TCC-BCC
T ss_pred hhheeeecCHHHHHHHHHhc-----CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----CCe-ECC
Confidence 99999999999999887421 2368899999999988864321 344555666666666666654 322 235
Q ss_pred eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+.|.++++.+.. ....+.+.|.++||++. +. ...+|+++. +++++++++++|++++++
T Consensus 290 ~~~~~~~~~~~~---------------~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 290 SEGNFVFHQLVV---------------PLKDYQTHMADAGVLIG-RAFPPADNWCRISLG-TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp CCSSEEEEECSS---------------CHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC-CHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEECCC---------------CHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 678888777642 12578888999999988 32 345788865 899999999999998864
No 58
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-32 Score=274.83 Aligned_cols=352 Identities=13% Similarity=0.089 Sum_probs=240.2
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHh-c-CCCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-G-TSFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 168 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~-~~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~ 168 (474)
.|+++|||..|.. .++ .++.+.+++.+++++ + ..|+. ..+++.++++++.+.++ +.++|++++||++|+
T Consensus 55 ~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al 131 (447)
T 3b46_A 55 QGRELINLGQGFF--SYS-PPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGI 131 (447)
T ss_dssp TTSCCEECCCCSC--SSC-CCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHH
T ss_pred cCCCeEEccCCCC--CCC-CCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHH
Confidence 4567899998853 344 689999999999875 2 23322 35778888888877664 346899999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC-CCCCCCCCceEEccC-CCHHHHHHHHhcCCCC
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP-GVPKGATYETLTAPF-NDVSALENLFENNKGE 246 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~-g~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~ 246 (474)
+.+++.. ..++++|++.+++||++... +...|..+..++..... +... ......+ .|+++|++.++ ++
T Consensus 132 ~~~~~~l--~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~v~~~~~~~~~~~----~~~~~~~~~d~~~l~~~l~---~~ 201 (447)
T 3b46_A 132 LSCLMGL--LNAGDEVIVFEPFFDQYIPN-IELCGGKVVYVPINPPKELDQR----NTRGEEWTIDFEQFEKAIT---SK 201 (447)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEEEECCGGGGTS----CBCSTTSEECHHHHHTTCC---TT
T ss_pred HHHHHHH--cCCCCEEEEeCCCchhHHHH-HHHcCCEEEEEeCCCccccccc----cccccCcccCHHHHHHhhc---cC
Confidence 9999953 34568899999999986543 34444433221110000 0000 0000011 28999998886 36
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc---c--cccCCCCceeehhhhcC-CC
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA---Q--EYFGVTPDLTTLGKIIG-GG 319 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~---~--~~~g~~pdi~t~sK~l~-~G 319 (474)
+++|++++++|++|.+.+ .+++++|+++|++||++||+||+|++| +.+.... . +..+..+.+.++||.++ +|
T Consensus 202 ~~~v~l~~p~nptG~~~~-~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 280 (447)
T 3b46_A 202 TKAVIINTPHNPIGKVFT-REELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATG 280 (447)
T ss_dssp EEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTT
T ss_pred CeEEEEeCCCCCCCcccC-HHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcc
Confidence 888888888888998875 566999999999999999999999988 5542111 1 12455566779999999 89
Q ss_pred cceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCe
Q 011959 320 LPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHA 394 (474)
Q Consensus 320 ~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (474)
||+||+++ ++++++.+. ...+..+++.++++++++.++|+.... +++.++++++++++.+.|+++ ++.
T Consensus 281 ~riG~~~~~~~~l~~~l~---~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~ 353 (447)
T 3b46_A 281 WRIGWVLSLNAELLSYAA---KAHTRICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDEL----GLP 353 (447)
T ss_dssp SCCEEEECSCHHHHHHHH---HHHHHHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH----TCC
T ss_pred hhhEEEEeCCHHHHHHHH---HHHhhccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHC----CCe
Confidence 99999999 999998886 333456788899999999999987632 334555666666666666654 444
Q ss_pred eEEeeeceeEEEEEecCCCc-C--cccccccchHHHHHHHHHHH-HCCeEecccC-----------CcceEEecCCcHHH
Q 011959 395 ICGGYISGMFGFFFTEGPVY-N--FEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------FEAGFTSLAHSSDD 459 (474)
Q Consensus 395 ~~v~~~g~~~~i~~~~~~~~-~--~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~-----------~~~~~~~~~~t~e~ 459 (474)
...+..|.++++.+...... . +... ..+.....++.+.|+ ++||++.|+. ...+|+++..++++
T Consensus 354 ~~~~~~g~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~~~e~ 432 (447)
T 3b46_A 354 YTAPEGTYFVLVDFSKVKIPEDYPYPEE-ILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCKDDAY 432 (447)
T ss_dssp EECCSBSSEEEEECTTCCCCTTCCCCGG-GSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCSCHHH
T ss_pred ecCCCeeEEEEEecccccCccccccccc-cccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeCCHHH
Confidence 33455677788877431000 0 0000 000112356787776 5899998763 34679988889999
Q ss_pred HHHHHHHHHHH
Q 011959 460 IQHTITAAEKV 470 (474)
Q Consensus 460 i~~~l~~l~~~ 470 (474)
|++++++|+++
T Consensus 433 l~~~~~~l~~~ 443 (447)
T 3b46_A 433 LENAVERLKLL 443 (447)
T ss_dssp HHHHHHHGGGG
T ss_pred HHHHHHHHHHH
Confidence 99999999873
No 59
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=100.00 E-value=1.4e-31 Score=269.12 Aligned_cols=333 Identities=17% Similarity=0.128 Sum_probs=239.7
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC---CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 168 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~ 168 (474)
|+++|||.+|.. +..+++++.+.+++.+++++.. .|+. ..+++.++++++.+.++ ..+++++++||++|+
T Consensus 33 g~~~idl~~g~~-~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~ 111 (407)
T 2zc0_A 33 GVKLISLAAGDP-DPELIPRAVLGEIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGAL 111 (407)
T ss_dssp SCCCEECCSCCC-CTTTSCHHHHHHHHHHHHHHCGGGGSCCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHH
T ss_pred CCceEeCCCCCC-CchhCCHHHHHHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHH
Confidence 778899988864 3557889999999999987631 1332 34677788888876554 367999999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC----CCHHHHHHHHh---
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFE--- 241 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~----~d~~~le~~l~--- 241 (474)
+.+++.+ ...+++|++.+++||+.... +...|..+ +.+|. .|+++|++.++
T Consensus 112 ~~~~~~~--~~~gd~vl~~~p~~~~~~~~-~~~~g~~~-------------------~~v~~~~~~~d~~~l~~~l~~~~ 169 (407)
T 2zc0_A 112 DLLGRVL--IDPGDVVITENPSYINTLLA-FEQLGAKI-------------------EGVPVDNDGMRVDLLEEKIKELK 169 (407)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCHHHHHH-HHTTTCEE-------------------EEEEEETTEECHHHHHHHHHHHH
T ss_pred HHHHHHh--cCCCCEEEEeCCChHHHHHH-HHHcCCEE-------------------EEcccCCCCCCHHHHHHHHHhhh
Confidence 9999964 23467899999999985433 33333322 22221 28999999987
Q ss_pred -cCCCCeEEEE-EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccccccCC---CCceeehhh
Q 011959 242 -NNKGEIAAII-LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGV---TPDLTTLGK 314 (474)
Q Consensus 242 -~~~~~~a~vi-~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~---~pdi~t~sK 314 (474)
++ .++++|+ ++.++|++|.+.+ .+++++|.++|++||++||+||+|+++ +.+.. .....++. ..++.++||
T Consensus 170 ~~~-~~~~~v~~~~~~~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 247 (407)
T 2zc0_A 170 AKG-QKVKLIYTIPTGQNPMGVTMS-MERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSK 247 (407)
T ss_dssp HTT-CCEEEEEECCSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTT
T ss_pred ccc-CCceEEEECCCCCCCCCcCCC-HHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEccccc
Confidence 42 2577775 5556777888765 566999999999999999999999988 55532 22222322 234568999
Q ss_pred hcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHh----cC-CCHHHHHHHHHHHHHHHHHHHhh
Q 011959 315 IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL----KE-PGTYEYLNKITGELTQGIIDAGK 389 (474)
Q Consensus 315 ~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~----~~-~~~~~~~~~~~~~l~~~L~~~~~ 389 (474)
.+++|+|+||+++++++++.+.. .....+++.+++++.++.++|+.. .. +...++++++.+++.+.|++...
T Consensus 248 ~~~~G~r~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 324 (407)
T 2zc0_A 248 VLGTGFRIGWIIAEGEILKKVLM---QKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLP 324 (407)
T ss_dssp TTCTTSCCEEEECCHHHHHHHHH---HHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccCCCcceEEEecCHHHHHHHHH---HHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999888863 333446778999999999999764 22 56777788888888888876422
Q ss_pred hcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC--------CcceEEecCC-cHHH
Q 011959 390 KAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ--------FEAGFTSLAH-SSDD 459 (474)
Q Consensus 390 ~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~--------~~~~~~~~~~-t~e~ 459 (474)
... ...+..|.++++.+... ....++.+.|.++ ||++.++. ...+|+++.. |+++
T Consensus 325 ~~~--~~~~~~~~~~~~~~~~~-------------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~ 389 (407)
T 2zc0_A 325 NAE--FTKPIAGMFVMFFLPEG-------------ADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEE 389 (407)
T ss_dssp TSC--BCCCSBSSEEEEECSTT-------------CCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTH
T ss_pred CCE--EecCCCcEEEEEEcCCC-------------CCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHH
Confidence 222 11234567777776421 0125688888888 99998752 2457887665 7999
Q ss_pred HHHHHHHHHHHHhh
Q 011959 460 IQHTITAAEKVLRQ 473 (474)
Q Consensus 460 i~~~l~~l~~~~~~ 473 (474)
+++++++|++++++
T Consensus 390 i~~~~~~l~~~l~~ 403 (407)
T 2zc0_A 390 IPIGIKKLAKLYKE 403 (407)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998865
No 60
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=100.00 E-value=5.3e-32 Score=270.81 Aligned_cols=327 Identities=15% Similarity=0.117 Sum_probs=225.4
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 168 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~ 168 (474)
.+|+++|||.+|. +.++ .+|+|++++.+++.+. ..|+ +..+++.++++++.+.++ +.++|++++||++|+
T Consensus 28 ~~g~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al 104 (391)
T 3h14_A 28 EAGRRIIHMEVGQ--PGTG-APRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGF 104 (391)
T ss_dssp HTTCCCEECCCSS--CSSC-SCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred hcCCCeEEccCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHH
Confidence 3688999999886 3444 3889999999988763 2232 134677788888776543 568999999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-------CHHHHHHHHh
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-------DVSALENLFE 241 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------d~~~le~~l~ 241 (474)
+.+++.. ...+++|++.+++|++....+ ...|..+ ..+|++ |+++|++.
T Consensus 105 ~~~~~~l--~~~gd~vl~~~p~~~~~~~~~-~~~g~~~-------------------~~v~~~~~~~~~~d~~~l~~~-- 160 (391)
T 3h14_A 105 LLAFTAL--FDSGDRVGIGAPGYPSYRQIL-RALGLVP-------------------VDLPTAPENRLQPVPADFAGL-- 160 (391)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCHHHHHHH-HHTTCEE-------------------EEEECCGGGTTSCCHHHHTTS--
T ss_pred HHHHHHh--cCCCCEEEEcCCCCccHHHHH-HHcCCEE-------------------EEeecCcccCCCCCHHHHHhc--
Confidence 9999952 345688999999998865433 3333322 222221 67777654
Q ss_pred cCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc-ccccCCCCceeehhhhcC-C
Q 011959 242 NNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFGVTPDLTTLGKIIG-G 318 (474)
Q Consensus 242 ~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~~g~~pdi~t~sK~l~-~ 318 (474)
++++|+++.++|++|.+.+.++ +++|.++|++||++||+||+|++| +.+.... .+..+....+.++||.++ +
T Consensus 161 ----~~~~v~i~~p~nptG~~~~~~~-l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 235 (391)
T 3h14_A 161 ----DLAGLMVASPANPTGTMLDHAA-MGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMT 235 (391)
T ss_dssp ----CCSEEEEESSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCT
T ss_pred ----CCeEEEECCCCCCCCccCCHHH-HHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCc
Confidence 4667777777888998887655 999999999999999999999988 6553322 222122222338999998 8
Q ss_pred CcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE
Q 011959 319 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (474)
Q Consensus 319 G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (474)
|+|+||+++++++++.+. ......+++.|++++.++.++|+..+. ++..++++++.+++.+.|++ ++....+
T Consensus 236 G~r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~~ 308 (391)
T 3h14_A 236 GWRVGWMVVPEDQVRVVE---RIAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLPK----AGFTRIA 308 (391)
T ss_dssp TSCCEEEECCGGGHHHHH---HHHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH----HTCCCBC
T ss_pred cceeEEEEeCHHHHHHHH---HHHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH----cCCCccc
Confidence 999999999999988886 334456778899999999888861111 23344445555555555544 3443333
Q ss_pred eee-ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC-------CcceEEecCCcHHHHHHHHHHHH
Q 011959 398 GYI-SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ-------FEAGFTSLAHSSDDIQHTITAAE 468 (474)
Q Consensus 398 ~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~-------~~~~~~~~~~t~e~i~~~l~~l~ 468 (474)
++. +.++++.+.... ....++.+.|+++ ||++.++. ...+|+++..+++++++++++|+
T Consensus 309 ~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~ 376 (391)
T 3h14_A 309 PPDGAFYVYADVSDLT------------DDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYARATADIEEGLDRLE 376 (391)
T ss_dssp CCCBTTEEEEECTTTC------------SCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCSCHHHHHHHHHHHH
T ss_pred CCCeeEEEEEecCccC------------CCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecCCHHHHHHHHHHHH
Confidence 444 456666663211 0125678888875 99998752 34678998889999999999999
Q ss_pred HHHhh
Q 011959 469 KVLRQ 473 (474)
Q Consensus 469 ~~~~~ 473 (474)
+++++
T Consensus 377 ~~~~~ 381 (391)
T 3h14_A 377 AFMQA 381 (391)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 61
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=100.00 E-value=1.5e-31 Score=265.17 Aligned_cols=326 Identities=13% Similarity=0.084 Sum_probs=231.0
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHh
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLA 175 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~a 175 (474)
.+.+|||.++. ++++ .+|+|++++.+++.+...++++.....++.++++++++ ..+++++++||++|++.+++..
T Consensus 29 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~ 105 (367)
T 3euc_A 29 SHGLVKLDAME--NPYR-LPPALRSELAARLGEVALNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAA 105 (367)
T ss_dssp CTTCEECCSSC--CCCC-CCHHHHHHHHHHHHHHHTTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHT
T ss_pred CCCeeEccCCC--CCCC-CCHHHHHHHHHHhhhhhhhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHH
Confidence 36789999884 4444 78999999999988532233344445677788877774 3479999999999999999952
Q ss_pred HhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011959 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
...+++|++.+++|+++...+. ..|..+..++..... ..|+++|++.++++ ++++|+++.+
T Consensus 106 --~~~gd~Vl~~~~~~~~~~~~~~-~~g~~~~~v~~~~~~--------------~~d~~~l~~~l~~~--~~~~v~~~~~ 166 (367)
T 3euc_A 106 --ARPGAKVMAPVPGFVMYAMSAQ-FAGLEFVGVPLRADF--------------TLDRGAMLAAMAEH--QPAIVYLAYP 166 (367)
T ss_dssp --CCTTCEEEEEESCSCCSCHHHH-TTTCEEEEEECCTTS--------------CCCHHHHHHHHHHH--CCSEEEEESS
T ss_pred --cCCCCEEEEcCCCHHHHHHHHH-HcCCeEEEecCCCCC--------------CCCHHHHHHHhhcc--CCCEEEEcCC
Confidence 3456889999999999765533 233322211111000 12899999999853 4678888777
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHh--CCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHH
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKEN--GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIM 332 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~--g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~ 332 (474)
+|++|.+.+.++ +++|.++|++| |++||+||+|++| +.+........+...++.++||...+|+|+||++++++++
T Consensus 167 ~nptG~~~~~~~-l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~ 245 (367)
T 3euc_A 167 NNPTGNLFDAAD-MEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGDPQWL 245 (367)
T ss_dssp CTTTCCCCCHHH-HHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEECHHHH
T ss_pred CCCCCCCCCHHH-HHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhcccccCceeeeeCHHHH
Confidence 888998886555 99999999999 9999999999988 5443333344444455668999933799999999999999
Q ss_pred HhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecC
Q 011959 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG 411 (474)
Q Consensus 333 ~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~ 411 (474)
+.+... ..+++.|+++++++.++|+..+. ++..++++++.+++.+.|+ +++.....++.|.++++.+. +
T Consensus 246 ~~~~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~----~~~g~~~~~~~~~~~~~~~~-~ 315 (367)
T 3euc_A 246 EQLDKV-----RPPYNVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEGMA----AHGGVTVFPSAANFLLARVP-D 315 (367)
T ss_dssp HHHGGG-----CCSSCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH----TSTTCEECCCSSSEEEEECS-C
T ss_pred HHHHHh-----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH----hCCCcEECCCCCeEEEEECC-C
Confidence 988732 23577899999999999875111 3334444444455554444 44322345667888877663 1
Q ss_pred CCcCcccccccchHHHHHHHHHHHHCCeEecccCC------cceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------EAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~------~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
...+.+.|.++||++.++.. ..+|+++. +++++++++++|+++++
T Consensus 316 ---------------~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 316 ---------------AAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS-TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp ---------------HHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred ---------------HHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC-CHHHHHHHHHHHHHHhc
Confidence 25678889999999987642 46788866 99999999999999875
No 62
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=4.6e-32 Score=269.77 Aligned_cols=332 Identities=15% Similarity=0.090 Sum_probs=224.3
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCC-----HHHHHHHHHHHhhCC---CCC-eEEEeCCHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPC-----LLENVLAEMVISAVP---SIE-MVRFVNSGTE 166 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~-----~~~~~la~~l~~~~~---~~~-~v~~~~sGse 166 (474)
.+|+++|||.+|. ..+| .+|.+.+++.+++++...++++. +++.++++++.+.++ .++ +|++++||++
T Consensus 22 ~~g~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~ 98 (376)
T 2dou_A 22 ERGVGLIDLSIGS--TDLP-PPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQE 98 (376)
T ss_dssp HTTCCCEECSSCC--CCCC-CCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHH
T ss_pred ccCCCEEeccCCC--CCCC-CCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHH
Confidence 3578899999885 3566 58999999999986532233343 334444444444334 235 8999999999
Q ss_pred HHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCC
Q 011959 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (474)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (474)
|++.+++.. ..++++|++.+++||++...+. ..|..+..++. ..++ ..|+++|++.++. +
T Consensus 99 a~~~~~~~l--~~~gd~vl~~~p~y~~~~~~~~-~~g~~~~~~~~--~~~~------------~~d~~~l~~~l~~---~ 158 (376)
T 2dou_A 99 GLAHLLLAL--TEPEDLLLLPEVAYPSYFGAAR-VASLRTFLIPL--REDG------------LADLKAVPEGVWR---E 158 (376)
T ss_dssp HHHHHHHHH--CCTTCEEEEESSCCHHHHHHHH-HTTCEEEEECB--CTTS------------SBCGGGSCHHHHH---H
T ss_pred HHHHHHHHh--cCCCCEEEECCCCcHhHHHHHH-HcCCEEEEeeC--CCCC------------CCCHHHHHHhhcc---C
Confidence 999999952 2345789999999999655443 33433222111 1111 0267888888762 5
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-cccccc---CCCCceeehhhhcC-CCc
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF---GVTPDLTTLGKIIG-GGL 320 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~---g~~pdi~t~sK~l~-~G~ 320 (474)
+++|+++.++|++|.+.+ .+++++|.++|++||++||+||+|++| +.+.. ...+.. +....+.++||.++ +|+
T Consensus 159 ~~~v~l~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 237 (376)
T 2dou_A 159 AKVLLLNYPNNPTGAVAD-WGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGF 237 (376)
T ss_dssp EEEEEECSSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGG
T ss_pred ceEEEECCCCCCcCccCC-HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhh
Confidence 788888766778888765 556999999999999999999999988 55432 122222 23334558999998 799
Q ss_pred ceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee-
Q 011959 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY- 399 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~- 399 (474)
|+||+++++++++.+.. .....+++.|+++++++.++|+.. ++..++.++..+..++.|.+.+.++ +. ..++
T Consensus 238 r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~L~~~-~~-~~~~~ 310 (376)
T 2dou_A 238 RLGFALGSEEALARLER---VKGVIDFNQYAGVLRMGVEALKTP--KEVVRGYARVYRERALGMAEALKGV-LS-LLPPR 310 (376)
T ss_dssp CCEEEEECHHHHHHHHH---HHHHHCCCSCHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHTTT-SE-ECCCC
T ss_pred eeEEEecCHHHHHHHHH---HHHhcccCCCHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHh-cC-ccCCC
Confidence 99999999999988862 334456778999999998888642 2233333333333444444433333 22 2233
Q ss_pred eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
.|.++++.+... ....++.+.|+++||++.++. ...+|+++..+++++++++++|++++
T Consensus 311 ~~~~~~~~~~~~-------------~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~Ris~~~~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 311 ATMYLWGRLPEG-------------VDDLEFGLRLVERGVALAPGRGFGPGGKGFVRIALVRPLEELLEAAKRIREAL 375 (376)
T ss_dssp BSSEEEEECCTT-------------CCHHHHHHHHHHTTEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHHTC
T ss_pred eeEEEEEECCCC-------------CCHHHHHHHHHHCCEEEcCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHh
Confidence 456677776421 012468889999999998763 34678988889999999999998865
No 63
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=100.00 E-value=4.5e-32 Score=269.29 Aligned_cols=321 Identities=14% Similarity=0.140 Sum_probs=233.1
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~ 169 (474)
+|+++|||.++. ..+|+ +|.+.+++.++++++. .|+ +..+++.++++++.+.++ +.+++++++||++|++
T Consensus 27 ~g~~~i~l~~~~--~~~~~-~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 103 (370)
T 2z61_A 27 EGKKVIHLEIGE--PDFNT-PKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLGLF 103 (370)
T ss_dssp TTCCCEECCCCS--CSSCC-CHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHH
T ss_pred cCCCEEEccCCC--CCCCC-CHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHH
Confidence 477889998885 35665 8999999999987642 333 235678888888877553 4679999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEE
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (474)
.+++.. ..++++|++.+++||+....+ ...|. +++.+| .|+++|++.+++ ++++
T Consensus 104 ~~~~~~--~~~gd~vl~~~p~~~~~~~~~-~~~g~-------------------~~~~v~-~d~~~l~~~l~~---~~~~ 157 (370)
T 2z61_A 104 FALSSI--IDDGDEVLIQNPCYPCYKNFI-RFLGA-------------------KPVFCD-FTVESLEEALSD---KTKA 157 (370)
T ss_dssp HHHHHH--CCTTCEEEEESSCCTHHHHHH-HHTTC-------------------EEEEEC-SSHHHHHHHCCS---SEEE
T ss_pred HHHHHh--cCCCCEEEEeCCCchhHHHHH-HHcCC-------------------EEEEeC-CCHHHHHHhccc---CceE
Confidence 999953 344578999999999865443 22232 233344 489999998863 5788
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcccccc-CCC-Cc--eeehhhhcC-CCcceE
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF-GVT-PD--LTTLGKIIG-GGLPVG 323 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~-g~~-pd--i~t~sK~l~-~G~~iG 323 (474)
|++++++|++|.+.+ ++ |.++|++||++||+||+|+++ +.|.......+ +.. .| +.++||.++ +|+|+|
T Consensus 158 v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G 232 (370)
T 2z61_A 158 IIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIG 232 (370)
T ss_dssp EEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCE
T ss_pred EEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEE
Confidence 888888888999988 66 999999999999999999988 55533222222 111 23 448999998 799999
Q ss_pred EEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHH-hcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeee
Q 011959 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-LKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI 400 (474)
Q Consensus 324 ~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~ 400 (474)
|+++++++++.+. ......+++.|+++++++.++|+. .++ ++..++++++.+++.+.|++. ++....+..
T Consensus 233 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~ 305 (370)
T 2z61_A 233 YVISNDEIIEAIL---KLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF----GWEVNNPIG 305 (370)
T ss_dssp EEECCHHHHHHHH---HHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCBCCCCCB
T ss_pred EEEECHHHHHHHH---HHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc----CCeecCCCc
Confidence 9999999998886 333445678899999999888865 222 445666777777777777664 322212233
Q ss_pred ceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 401 g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
|.++++.+.. ...++.+.|+ ++||++.++. ...+|+++.++++++++++++|++++++
T Consensus 306 ~~~~~~~~~~---------------~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~~~~~i~~~~~~l~~~l~~ 370 (370)
T 2z61_A 306 AYYVFPNIGE---------------DGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYANSYENIKEGLERIKEFLNK 370 (370)
T ss_dssp TTEECCBCSS---------------CHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCSCHHHHHHHHHHHHHHHC-
T ss_pred ceEEEEecCC---------------CHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeCCHHHHHHHHHHHHHHHhC
Confidence 5555555421 1256788887 7899998752 3468998889999999999999998753
No 64
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=100.00 E-value=5.8e-32 Score=268.92 Aligned_cols=328 Identities=12% Similarity=0.000 Sum_probs=230.5
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~ 169 (474)
.+| ++|||.+|. +.++ .+|.|++++.+++.....|+. ..+++.++++++.+.++ ..+++++++||++|++
T Consensus 21 ~~g-~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~ 96 (376)
T 3ezs_A 21 PKK-RGLDLGIGE--PQFE-TPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLF 96 (376)
T ss_dssp CSS-CCCBCSSCC--CCSC-CCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHH
T ss_pred ccC-CEEEeCCCC--CCCC-CCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHH
Confidence 367 889999885 4555 689999999998754444432 35788889999887765 4689999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEE
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (474)
.+++....-+++++|++.+++||++...+ ...|..+..++.....++ ++ ++++.+.. ++++
T Consensus 97 ~~~~~~~~~~~gd~vl~~~p~~~~~~~~~-~~~g~~~~~~~~~~~~~~--------------~~-~l~~~~~~---~~~~ 157 (376)
T 3ezs_A 97 NFPSFVLFDYQNPTIAYPNPFYQIYEGAA-KFIKAKSLLMPLTKENDF--------------TP-SLNEKELQ---EVDL 157 (376)
T ss_dssp HHHHHHTTTCSSCEEEEEESCCTHHHHHH-HHTTCEEEEEECCGGGTS--------------CC-CCCHHHHH---HCSE
T ss_pred HHHHHHcCCCCCCEEEEecCCcHhHHHHH-HHcCCEEEEcccCCCCCc--------------ch-hHHhhhcc---CCCE
Confidence 99995322112688999999999865543 333332222111110011 11 44555553 4567
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccc-c--------ccCCCCceeehhhhcC-C
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-E--------YFGVTPDLTTLGKIIG-G 318 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~-~--------~~g~~pdi~t~sK~l~-~ 318 (474)
|+++.++|++|.+.+.++ +++|+++|++||++||+||+|++| +.+..... . ..+....+.++||.+| +
T Consensus 158 v~~~~p~nptG~~~~~~~-l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 236 (376)
T 3ezs_A 158 VILNSPNNPTGRTLSLEE-LISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAP 236 (376)
T ss_dssp EEECSSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCG
T ss_pred EEEcCCCCCcCCCCCHHH-HHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCc
Confidence 777666788898876555 999999999999999999999988 65533222 1 2344455668999997 7
Q ss_pred CcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe
Q 011959 319 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (474)
Q Consensus 319 G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (474)
|+|+||+++++++++.+. ......+++.|+++++++.++|+. .+..++.++..+..++.+.+.+. ++. .+
T Consensus 237 G~r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~--~~~--~~ 306 (376)
T 3ezs_A 237 GLRSGFIAGDSRLLEKYK---AFRAYLGYTSANAIQKASEAAWLD---DRHAEFFRNIYANNLKLARKIFK--NTL--IY 306 (376)
T ss_dssp GGCCEEEEECHHHHHHHH---HHHTTTCCCCCHHHHHHHHHHHHC---SHHHHHHHHHHHHHHHHHHHHST--TCC--CC
T ss_pred cceeEEEeeCHHHHHHHH---HHHhhhcCCCChHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHhc--CCC--CC
Confidence 999999999999998887 333455788999999999999874 33344444444444444444433 322 45
Q ss_pred eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC--------CcceEEecCCcHHHHHHHHHHHHH
Q 011959 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~--------~~~~~~~~~~t~e~i~~~l~~l~~ 469 (474)
..|.++++.+.+ ..++.+.|++ +||++.++. ...+|+++..|++++++++++|++
T Consensus 307 ~~~~~~~~~~~~----------------~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~i~~~l~~l~~ 370 (376)
T 3ezs_A 307 PYSFYVYLPVQN----------------GENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVYDTPLLEKPLEIIET 370 (376)
T ss_dssp SBSSEEEEECSC----------------HHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCSCHHHHHHHHHHHHH
T ss_pred CcceEEEEECCC----------------HHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcCCHHHHHHHHHHHHH
Confidence 677788877631 2567888887 899998752 346788887899999999999999
Q ss_pred HHhh
Q 011959 470 VLRQ 473 (474)
Q Consensus 470 ~~~~ 473 (474)
++++
T Consensus 371 ~l~~ 374 (376)
T 3ezs_A 371 YREN 374 (376)
T ss_dssp HHCC
T ss_pred HHHh
Confidence 9865
No 65
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=100.00 E-value=3e-35 Score=294.62 Aligned_cols=354 Identities=11% Similarity=0.018 Sum_probs=238.7
Q ss_pred CeEEEeeccCEEEEcCCC--EEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC-CCCHHHHHHHHHHHhhCC---C
Q 011959 82 PIVFDSVKGSHMWDIDGN--EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG-APCLLENVLAEMVISAVP---S 154 (474)
Q Consensus 82 p~~~~~~~G~~~~d~dG~--~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~-~~~~~~~~la~~l~~~~~---~ 154 (474)
.++..+++|+++||.+|+ ++|||..+. ..++ .+|++++++.+++.+.. .|. ...+++.++++++.+.++ +
T Consensus 12 ~~~~~~~~g~~~~d~~g~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~ 88 (392)
T 3b1d_A 12 TAPNRLSHHTYKWKETETDPQLLPAWIAD--MDFE-VMPEVKQAIHDYAEQLVYGYTYASDELLQAVLDWEKSEHQYSFD 88 (392)
Confidence 455678999999999999 999998873 2333 68999999999986532 222 134556667776665553 4
Q ss_pred CCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHH
Q 011959 155 IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVS 234 (474)
Q Consensus 155 ~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~ 234 (474)
.++|++++||++|++.+++.. ..++++|++.+++||+....+.. .|..+..++.....+ .+. .|++
T Consensus 89 ~~~v~~~~g~~~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~g--------~~~---~d~~ 154 (392)
T 3b1d_A 89 KEDIVFVEGVVPAISIAIQAF--TKEGEAVLINSPVYPPFARSVRL-NNRKLVSNSLKEENG--------LFQ---IDFE 154 (392)
Confidence 679999999999999999953 34567899999999997654332 222221111100000 000 1678
Q ss_pred HHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC----ccccc--cCCCC
Q 011959 235 ALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG----GAQEY--FGVTP 307 (474)
Q Consensus 235 ~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~----~~~~~--~g~~p 307 (474)
+|++.+++. ++++|+++.++|++|.+.+.+ ++++|+++|++||++||+||+|++| +.+.. ..... .+..+
T Consensus 155 ~l~~~l~~~--~~~~v~~~~~~nptG~~~~~~-~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i 231 (392)
T 3b1d_A 155 QLENDIVEN--DVKLYLLCNPHNPGGRVWERE-VLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFAL 231 (392)
Confidence 888888632 567777777778888876654 5999999999999999999999988 65521 11111 34445
Q ss_pred ceeehhhhcC-CCcceEEEEecH-HHHHhhcCCCCcccccC-CCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHH
Q 011959 308 DLTTLGKIIG-GGLPVGAYGGRR-DIMEMVAPAGPMYQAGT-LSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQ 382 (474)
Q Consensus 308 di~t~sK~l~-~G~~iG~~~~~~-~i~~~~~~~~~~~~~~t-~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~ 382 (474)
++.+|||+++ +|+|+||+++++ ++++.+.. .....+ .+.|+++++++.++|+..++ ++..++++++.+++.+
T Consensus 232 ~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 308 (392)
T 3b1d_A 232 VLSSATKTFNIAGTKNSYAIIENPTLCAQFKH---QQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVE 308 (392)
Confidence 6778999999 899999998865 58887763 222222 35688999999998874322 3444445555555555
Q ss_pred HHHHHhhhcCCeeEEeeeceeE-EEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecC
Q 011959 383 GIIDAGKKAGHAICGGYISGMF-GFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLA 454 (474)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~ 454 (474)
.|++. .+....+++.|.++ ++++... .....++.+.|+ ++||++.++. ...+|+++.
T Consensus 309 ~l~~~---~~~~~~~~~~~~~~~~i~~~~~------------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~ 373 (392)
T 3b1d_A 309 YFAQE---APRLKVMKPQGTYLIWLDFSDY------------GLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIA 373 (392)
Confidence 55441 22222345555554 4665321 011246778887 7899998753 235788888
Q ss_pred CcHHHHHHHHHHHHHHHhh
Q 011959 455 HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 455 ~t~e~i~~~l~~l~~~~~~ 473 (474)
.++++|++++++|++++++
T Consensus 374 ~~~e~i~~~l~~l~~~l~~ 392 (392)
T 3b1d_A 374 APKSLVEEICKRIVCCLPK 392 (392)
Confidence 8999999999999988753
No 66
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.2e-31 Score=270.31 Aligned_cols=338 Identities=13% Similarity=0.108 Sum_probs=229.1
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-C-CCC---CCCHHHHHHHHHHHhhCC---CC-CeEEEeCCHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-T-SFG---APCLLENVLAEMVISAVP---SI-EMVRFVNSGTE 166 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~-~~~---~~~~~~~~la~~l~~~~~---~~-~~v~~~~sGse 166 (474)
.+|+++|||.+|. +.++ .+|.+.+++.+++++. . .|+ +..+++.++++++.+.++ .. ++|++++||++
T Consensus 34 ~~g~~~idl~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~ 110 (412)
T 2x5d_A 34 RRGEDIIDLSMGN--PDGP-TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKE 110 (412)
T ss_dssp HTTCCCEECSSCC--CCSC-CCHHHHHHHHHTC---------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHH
T ss_pred hcCCCEEecCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHH
Confidence 4688899999886 4566 7899999999987653 2 232 134667777777766544 34 69999999999
Q ss_pred HHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCC
Q 011959 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (474)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (474)
|++.+++.. ..++++|++.+++||++...+. ..|..+..++.....++ . .|+++|++.++. +
T Consensus 111 a~~~~~~~~--~~~gd~Vl~~~p~~~~~~~~~~-~~g~~~~~~~~~~~~~~---------~---~d~~~l~~~i~~---~ 172 (412)
T 2x5d_A 111 GLAHLMLAT--LDHGDTILVPNPSYPIHIYGAV-IAGAQVRSVPLVPGIDF---------F---NELERAIRESIP---K 172 (412)
T ss_dssp HHHHHHHHH--CCTTCEEEEEESCCHHHHHHHH-HHTCEEEEEECSTTSCH---------H---HHHHHHHHTEES---C
T ss_pred HHHHHHHHh--CCCCCEEEEcCCCchhHHHHHH-HcCCEEEEeecCCccCC---------C---CCHHHHHHhccc---C
Confidence 999999952 2345789999999998655443 33432221111000000 0 156778877762 4
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-cc-ccc---cCCCCceeehhhhcC-CC
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GA-QEY---FGVTPDLTTLGKIIG-GG 319 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~-~~~---~g~~pdi~t~sK~l~-~G 319 (474)
+++|+++.++|++|.+.+ .+++++|.++|++||++||+||+|+++ +.|.. .. ... .+....+.++||.++ +|
T Consensus 173 ~~~v~l~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 251 (412)
T 2x5d_A 173 PRMMILGFPSNPTAQCVE-LDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAG 251 (412)
T ss_dssp CSEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTT
T ss_pred ceEEEECCCCCCCCCcCC-HHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcc
Confidence 566666555677888765 566999999999999999999999988 55531 11 121 233333558999999 89
Q ss_pred cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE
Q 011959 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (474)
Q Consensus 320 ~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (474)
+|+||+++++++++.+. ......+++.|+++++++.++|+..++ +...++++++.+++.+.|++. ++.. .
T Consensus 252 ~r~G~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~-~ 323 (412)
T 2x5d_A 252 WRIGFMVGNPELVSALA---RIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLREA----GWMV-E 323 (412)
T ss_dssp SCCEEEEECHHHHHHHH---HHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHH----TCCC-C
T ss_pred cceEEEEcCHHHHHHHH---HHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCEe-c
Confidence 99999999999998886 233445788999999999999875422 345566666777777777664 3222 2
Q ss_pred eee-ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC------CcceEEecCCcHHHHHHHHHHHHH
Q 011959 398 GYI-SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 398 ~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~ 469 (474)
++. |.++++.+... .. ......+.+.|++ +||++.++. ...+|+++..+++++++++++|++
T Consensus 324 ~~~~g~~~~~~~~~~-~~---------~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~~~l~~~l~~l~~ 393 (412)
T 2x5d_A 324 NPKASMYVWAKIPEP-YA---------HLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFALIENRDRLRQAVRGIKA 393 (412)
T ss_dssp CCSBSSEEEEECCTT-TG---------GGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHHHHHHHHHH
T ss_pred CCCeeeEEEEEcCCc-cC---------CCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHH
Confidence 333 55677776321 00 0012567888875 699998763 346789888899999999999999
Q ss_pred HHhh
Q 011959 470 VLRQ 473 (474)
Q Consensus 470 ~~~~ 473 (474)
++++
T Consensus 394 ~l~~ 397 (412)
T 2x5d_A 394 MFRA 397 (412)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9865
No 67
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=100.00 E-value=3.9e-31 Score=269.24 Aligned_cols=334 Identities=13% Similarity=0.143 Sum_probs=231.9
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc----CCCC---CCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFG---APCLLENVLAEMVISAVP--SIEMVRFVNSGTEAC 168 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~---~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~ 168 (474)
+..+|||.+|... ..+++++++.+++.+++++. ..|+ +..+++.++++++.+.++ ..++|++++||++|+
T Consensus 75 ~~~~i~l~~g~p~-~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al 153 (448)
T 3aow_A 75 TSDIISLAGGLPN-PKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQAL 153 (448)
T ss_dssp TSSSEECCCCCCC-GGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHH
T ss_pred CCCcEeCCCCCCC-chhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHH
Confidence 4568999988643 34578899999999988752 2333 234677777777755544 368999999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC----CCHHHHHHHHh---
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFE--- 241 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~----~d~~~le~~l~--- 241 (474)
+.+++.. ...++.|++.+++|+++...+ ...|.. ++.+|. .|+++|++.++
T Consensus 154 ~~~~~~l--~~~Gd~Vlv~~p~y~~~~~~~-~~~g~~-------------------~~~v~~~~~g~d~~~L~~~l~~~~ 211 (448)
T 3aow_A 154 DLIGRVF--LNPGDIVVVEAPTYLAALQAF-NFYEPQ-------------------YIQIPLDDEGMKVEILEEKLKELK 211 (448)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCHHHHHHH-HTTCCE-------------------EEEEEEETTEECHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCCEEEEeCCChHHHHHHH-HHcCCE-------------------EEEeccCCCCCCHHHHHHHHhhhh
Confidence 9999952 344688999999999865443 223322 222222 28999999987
Q ss_pred -cCCCCeEEEEEcc-ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC----ccccccCCCCceeehhh
Q 011959 242 -NNKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG----GAQEYFGVTPDLTTLGK 314 (474)
Q Consensus 242 -~~~~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~----~~~~~~g~~pdi~t~sK 314 (474)
+. .++++|++.| .+|++|.+.+ .+++++|.++|++||++||+||+|+++ +.|.. ...+..+..+++.+|||
T Consensus 212 ~~~-~~~k~v~~~~~~~NPtG~~~~-~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK 289 (448)
T 3aow_A 212 SQG-KKVKVVYTVPTFQNPAGVTMN-EDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSK 289 (448)
T ss_dssp HTT-CCEEEEEECCSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTT
T ss_pred ccC-CCCeEEEECCCCCCCcCCCCC-HHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchh
Confidence 42 3678876555 5566887765 566999999999999999999999988 55432 12222233455669999
Q ss_pred hcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHh--cC--CCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 315 IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE--PGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 315 ~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~--~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
.+++|+|+||+++++++++.+.. .....+++.|+++++++.++|+.. .+ +...+.++++.+++.+.|++....
T Consensus 290 ~~~~GlriG~v~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 366 (448)
T 3aow_A 290 ILAPGFRIGWMVGDPGIIRKMEI---AKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPE 366 (448)
T ss_dssp TTCGGGCCEEEEECHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred hccccccEEEEEeCHHHHHHHHH---HHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999988862 334446778999999999888742 11 233444445555555555543110
Q ss_pred cCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--------CcceEEecCC-cHHHHH
Q 011959 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAH-SSDDIQ 461 (474)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~~~~~~-t~e~i~ 461 (474)
++....+..|+++++.+... ....++.+.|+++||++.|+. ...+|+++.. ++++|+
T Consensus 367 -g~~~~~p~~g~~~~v~~~~~-------------~~~~~l~~~l~~~gV~v~pg~~f~~~~~~~~~iRls~~~~~~e~i~ 432 (448)
T 3aow_A 367 -GVKWTKPEGGMFIWVTLPDG-------------IDSKKMLERAIKKGVAYVPGEAFYAHRDVKNTMRLNFTYVDEDKIM 432 (448)
T ss_dssp -TCEECCCSBSSEEEEECSTT-------------CCHHHHHHHHHHTTEECEEGGGGSTTCCCCSEEEEECSSSCTHHHH
T ss_pred -CeEEeCCCccEEEEEEcCCC-------------CCHHHHHHHHHHCCcEEEcchhhcCCCCCCCEEEEEeCCCCHHHHH
Confidence 22222234577788877421 012578889999999998752 2457887665 899999
Q ss_pred HHHHHHHHHHhh
Q 011959 462 HTITAAEKVLRQ 473 (474)
Q Consensus 462 ~~l~~l~~~~~~ 473 (474)
+++++|.+++++
T Consensus 433 ~~~~~L~~~l~~ 444 (448)
T 3aow_A 433 EGIKRLAETIKE 444 (448)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998865
No 68
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=100.00 E-value=1.3e-30 Score=263.29 Aligned_cols=357 Identities=13% Similarity=0.088 Sum_probs=238.2
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC---CCCC---CCHHHHHHHHHHHhhCC---CC-CeEEEeCCHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFGA---PCLLENVLAEMVISAVP---SI-EMVRFVNSGTEAC 168 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~~---~~~~~~~la~~l~~~~~---~~-~~v~~~~sGseA~ 168 (474)
..+|||..|. ..++ .+|.|++++.+++.+.. .|+. ..+++.++++++.+.++ .. ++|++++||++|+
T Consensus 28 ~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~ 104 (422)
T 3fvs_A 28 HDVVNLGQGF--PDFP-PPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGAL 104 (422)
T ss_dssp SCCEECCCSS--CSSC-CCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHH
T ss_pred CCceEeCCCC--CCCC-CCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHH
Confidence 3578888874 2333 78999999999998632 3332 34778888888887654 23 6899999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCC---CCCCCCCCCCceEEccCCCHHHHHHHHhcCCC
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD---SPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~---~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (474)
+.+++.. ..+++.|++.+++||++... +...|..+..++... ..|.... ...+. -|+++|++.++ +
T Consensus 105 ~~~~~~~--~~~gd~vl~~~p~~~~~~~~-~~~~g~~~~~~~~~~~~~~~G~~~~--~~~~~---~d~~~l~~~~~---~ 173 (422)
T 3fvs_A 105 FTAFQAL--VDEGDEVIIIEPFFDCYEPM-TMMAGGRPVFVSLKPGPIQNGELGS--SSNWQ---LDPMELAGKFT---S 173 (422)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEECBCCCCCSSSCCB--GGGSB---CCHHHHHTTCC---T
T ss_pred HHHHHHH--cCCCCEEEEcCCCchhhHHH-HHHcCCEEEEEeccccccccccccc--ccCCC---CCHHHHHhhcC---C
Confidence 9999953 44567899999999996543 333444332221111 0110000 00000 17899988876 3
Q ss_pred CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-cccccc----CCCCceeehhhhcC-C
Q 011959 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYF----GVTPDLTTLGKIIG-G 318 (474)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~----g~~pdi~t~sK~l~-~ 318 (474)
++++|++++++|++|.+.+ .+.+++|+++|++||++||+||+|++| +.+.. .....+ +...++.++||.++ +
T Consensus 174 ~~~~v~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~ 252 (422)
T 3fvs_A 174 RTKALVLNTPNNPLGKVFS-REELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSAT 252 (422)
T ss_dssp TEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCG
T ss_pred CceEEEECCCCCCCCcCCC-HHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCc
Confidence 6888888888888998885 455999999999999999999999988 65532 222222 22234458999999 7
Q ss_pred CcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011959 319 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-----LKEPGTYEYLNKITGELTQGIIDAGKKAGH 393 (474)
Q Consensus 319 G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (474)
|+|+||+++++++++.+. ......+++.|+++++++.++|+. ...++..+++.+..+..++.|.+.+.++++
T Consensus 253 G~r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 329 (422)
T 3fvs_A 253 GWKVGWVLGPDHIMKHLR---TVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSVGL 329 (422)
T ss_dssp GGCCEEEECCHHHHHHHH---HHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cceEEEEEeCHHHHHHHH---HHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999998876 334556788999999999999975 112344444444444444444444444555
Q ss_pred eeEEeeeceeEEEEEecCCCcCcccc-cccchHHHHHHHHHHH-HCCeEecccC-----------CcceEEecCCcHHHH
Q 011959 394 AICGGYISGMFGFFFTEGPVYNFEDA-KKSETTKFARFYRGML-EEGVYFAPSQ-----------FEAGFTSLAHSSDDI 460 (474)
Q Consensus 394 ~~~v~~~g~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~Gv~v~~~~-----------~~~~~~~~~~t~e~i 460 (474)
....+..|.++++.+..... +..+. ...+.....++.+.++ ++||++.++. ...+|+++..++++|
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~i 408 (422)
T 3fvs_A 330 KPIIPQGSYFLITDISDFKR-KMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHFDHYIRFCFVKDEATL 408 (422)
T ss_dssp EEEBCSBSSEEEEECHHHHH-HCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTSCSEEEEECCCCHHHH
T ss_pred eecCCCeeeEEEEechhhcc-cccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCCCCeEEEEecCCHHHH
Confidence 54556667777777643100 00000 0000001245666655 5799998753 245789999999999
Q ss_pred HHHHHHHHHHHhhC
Q 011959 461 QHTITAAEKVLRQI 474 (474)
Q Consensus 461 ~~~l~~l~~~~~~~ 474 (474)
++++++|+++++++
T Consensus 409 ~~~l~~l~~~l~~l 422 (422)
T 3fvs_A 409 QAMDEKLRKWKVEL 422 (422)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999998764
No 69
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.98 E-value=6.7e-31 Score=263.38 Aligned_cols=329 Identities=13% Similarity=0.090 Sum_probs=233.7
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-----CCCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-----TSFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTE 166 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-----~~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGse 166 (474)
|+++|||..+ ++....+|.+.+++.+++++. ..|+ +..+++.++++++.+.++ +.++|++++||++
T Consensus 34 ~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~ 110 (398)
T 3ele_A 34 KENVYDFSIG---NPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAA 110 (398)
T ss_dssp GGGCEECCSC---CCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHH
T ss_pred CCCeEEeecC---CCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHH
Confidence 4678999988 554457999999999998763 2332 225778888888877654 4689999999999
Q ss_pred HHHHHHHHhHhhcCC-cEEEEEeCCCCCCchhHHHhcCCCCccCCCCCC-CCCCCCCCCceEEccCCCHHHHHHHHhcCC
Q 011959 167 ACMGVLRLARAFTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-PGVPKGATYETLTAPFNDVSALENLFENNK 244 (474)
Q Consensus 167 A~~~al~~ar~~~~~-~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~-~g~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (474)
|++.+++.. ...+ ++|++.+++|+++...+ ...|..+..++.... .++ |+++|++.++.
T Consensus 111 al~~~~~~l--~~~g~d~vl~~~p~~~~~~~~~-~~~g~~~~~v~~~~~~~~~--------------d~~~l~~~l~~-- 171 (398)
T 3ele_A 111 SLSICFRAL--TSDAYDEFITIAPYFPEYKVFV-NAAGARLVEVPADTEHFQI--------------DFDALEERINA-- 171 (398)
T ss_dssp HHHHHHHHH--CCSTTCEEEEESSCCTHHHHHH-HHTTCEEEEECCCTTTSSC--------------CHHHHHHTCCT--
T ss_pred HHHHHHHHH--cCCCCCEEEEeCCCchhhHHHH-HHcCCEEEEEecCCcCCcC--------------CHHHHHHHhCc--
Confidence 999999953 3344 78999999998865433 333433322211100 011 79999988863
Q ss_pred CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHH------hCCEEEEeccccCc-ccCCC--ccccccCCCCceeehhhh
Q 011959 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE------NGALLIFDEVMTGF-RLAYG--GAQEYFGVTPDLTTLGKI 315 (474)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~------~g~llI~DEv~~g~-r~g~~--~~~~~~g~~pdi~t~sK~ 315 (474)
++++|+++.++|++|.+.+.++ +++|.++|++ ||++||+||+|++| +.+.. ...+.++....+.++||+
T Consensus 172 -~~~~v~~~~p~nptG~~~~~~~-l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~ 249 (398)
T 3ele_A 172 -HTRGVIINSPNNPSGTVYSEET-IKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKS 249 (398)
T ss_dssp -TEEEEEECSSCTTTCCCCCHHH-HHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTT
T ss_pred -CCCEEEEcCCCCCCCCCCCHHH-HHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhc
Confidence 6788888777888998887666 9999999999 99999999999988 65532 222333333445589999
Q ss_pred cC-CCcceEEEEecHHHHH------hhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh
Q 011959 316 IG-GGLPVGAYGGRRDIME------MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 388 (474)
Q Consensus 316 l~-~G~~iG~~~~~~~i~~------~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~ 388 (474)
++ +|+|+||+++++++++ .+.. .....++++.+++++.++.+.++ +....++++++++++.+.|+++
T Consensus 250 ~~~~G~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~l~~~L~~~- 323 (398)
T 3ele_A 250 LSLPGERIGYVLVPDEVYDKAELYAAVCG--AGRALGYVCAPSLFQKMIVKCQG---ATGDINAYKENRDLLYEGLTRI- 323 (398)
T ss_dssp SSCTTTCCEEEECCTTSTTHHHHHHHHHH--HHHHTTCCCSCHHHHHHHTTCTT---CCCCHHHHHHHHHHHHHHHHHH-
T ss_pred CCCccceeEEEEEcchhhhHHHHHHHHHH--HhhhccccCCCHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHc-
Confidence 99 8999999999887433 2221 01122356677788777666553 4456788899999999999876
Q ss_pred hhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecCCcHHHHHHHH
Q 011959 389 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTI 464 (474)
Q Consensus 389 ~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l 464 (474)
++....+..|.++++.+... ....+.+.|.++||++.++. ...+|+++.+++++|++++
T Consensus 324 ---g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~~~~e~i~~~l 386 (398)
T 3ele_A 324 ---GYHCFKPDGAFYMFVKALED--------------DSNAFCEKAKEEDVLIVAADGFGCPGWVRISYCVDREMIKHSM 386 (398)
T ss_dssp ---TCCEECCSBSSEEEEECSSS--------------CHHHHHHHHHTTTEECEESGGGTCTTEEEEECCSCHHHHHHHH
T ss_pred ---CCeecCCCeeEEEEEEcCCC--------------CHHHHHHHHHHCCEEEeCccccCCCCeEEEEecCCHHHHHHHH
Confidence 33222233445577765321 12567888899999998864 3468898889999999999
Q ss_pred HHHHHHHhh
Q 011959 465 TAAEKVLRQ 473 (474)
Q Consensus 465 ~~l~~~~~~ 473 (474)
++|++++++
T Consensus 387 ~~l~~~l~~ 395 (398)
T 3ele_A 387 PAFEKIYKK 395 (398)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 70
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.98 E-value=9.3e-32 Score=266.46 Aligned_cols=328 Identities=16% Similarity=0.090 Sum_probs=218.5
Q ss_pred EEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHH
Q 011959 94 WDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVL 172 (474)
Q Consensus 94 ~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al 172 (474)
++.+|+++|||.++. +++| .+|++++++.+++++...| +.....++.+.++++++ ..+++++++||++|++.++
T Consensus 19 ~~~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~ 93 (364)
T 1lc5_A 19 LGISPDQLLDFSANI--NPLG-MPVSVKRALIDNLDCIERY--PDADYFHLHQALARHHQVPASWILAGNGETESIFTVA 93 (364)
T ss_dssp HTSCGGGSEECSSCC--CTTC-CCHHHHHHHHHTGGGGGSC--CCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHH
T ss_pred cCCCccceEEecccc--CCCC-CCHHHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHH
Confidence 346788999999886 4577 7899999999988653333 23334667777777665 4579999999999999999
Q ss_pred HHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEE
Q 011959 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (474)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (474)
+.+ .+++|++.+++||++...+. ..|..+...+.....++ +.++++.+.+. +++++|++
T Consensus 94 ~~~----~gd~vl~~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~-------------~~l~~~~~~~~---~~~~~v~i 152 (364)
T 1lc5_A 94 SGL----KPRRAMIVTPGFAEYGRALA-QSGCEIRRWSLREADGW-------------QLTDAILEALT---PDLDCLFL 152 (364)
T ss_dssp HHH----CCSEEEEEESCCTHHHHHHH-HTTCEEEEEECCGGGTT-------------CCCTTHHHHCC---TTCCEEEE
T ss_pred HHc----CCCeEEEeCCCcHHHHHHHH-HcCCeEEEEeCCccccc-------------chhHHHHHhcc---CCCCEEEE
Confidence 954 44899999999999655443 33432221111100011 00232333332 34566665
Q ss_pred ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccc---cCCCCceeehhhhcC-CCcceEEEE-
Q 011959 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY---FGVTPDLTTLGKIIG-GGLPVGAYG- 326 (474)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~---~g~~pdi~t~sK~l~-~G~~iG~~~- 326 (474)
..++|++|.+.+ .+++++|.++|++||++||+||+|++| +.+.. ..+. ++....+.++||.++ +|+|+||++
T Consensus 153 ~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~ 230 (364)
T 1lc5_A 153 CTPNNPTGLLPE-RPLLQAIADRCKSLNINLILDEAFIDFIPHETG-FIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVN 230 (364)
T ss_dssp ESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCC-SGGGCTTCTTEEEEEESTTTTTCTTTCCEEEEC
T ss_pred eCCCCCCCCCCC-HHHHHHHHHHhhhcCcEEEEECcChhhccCccc-hhhHhccCCCEEEEEECchhhcCCccceEEEEE
Confidence 444777887765 566999999999999999999999988 43322 1222 233333458999999 899999999
Q ss_pred ecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEE
Q 011959 327 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (474)
Q Consensus 327 ~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (474)
+++++++.+... ..+++.|+++++++.++|+. .+..++.++..+..++.|.+.+.+++.....++.|.++++
T Consensus 231 ~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~~~~~ 302 (364)
T 1lc5_A 231 SDDAAMARMRRQ-----QMPWSVNALAALAGEVALQD---SAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANYLLL 302 (364)
T ss_dssp CCHHHHHHHHHH-----SCTTCSCHHHHHHHHHGGGC---HHHHHHHHHHHHHHHHHHHHHHHTSTTEEECCCSSSEEEE
T ss_pred CCHHHHHHHHHh-----CCCCCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHhcCCCCEECCCCCeEEEE
Confidence 999999888631 23678899999998888764 2233343333333444444433344323334567888887
Q ss_pred EEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+... ...+.+.|.++||++.++. ...+|+++. +++++++++++|++++++
T Consensus 303 ~~~~~---------------~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~-~~~~~~~l~~~l~~~~~~ 359 (364)
T 1lc5_A 303 RCERE---------------DIDLQRRLLTQRILIRSCANYPGLDSRYYRVAIR-SAAQNERLLAALRNVLTG 359 (364)
T ss_dssp EESCT---------------TCCHHHHHHTTTEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHHHC--
T ss_pred ECCCc---------------HHHHHHHHHHCCcEEeeCcccCCCCCCEEEEEeC-CHHHHHHHHHHHHHHhhc
Confidence 76421 1357788889999998863 245788865 688899999999988754
No 71
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.98 E-value=5e-31 Score=263.68 Aligned_cols=331 Identities=16% Similarity=0.161 Sum_probs=234.8
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~ 169 (474)
.|+++|||.++. ..+++ +|.+.+++.+++++.. .|+ +..+++.++++++.+.++ ..+++++++||++|++
T Consensus 39 ~g~~~i~l~~~~--~~~~~-~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~ 115 (389)
T 1o4s_A 39 KGEDVINLTAGE--PDFPT-PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALF 115 (389)
T ss_dssp TTCCCEECCCSS--CSSCC-CHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEEccCCC--CCCCC-CHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHH
Confidence 477889998885 34664 7999999999987642 332 235677788888876543 4679999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC-CCHHHHHHHHhcCCCCeE
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNKGEIA 248 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~a 248 (474)
.+++.. ..++++|++.+++|+++...+ ...|..+..++.....+ + -|+++|++.++. +++
T Consensus 116 ~~~~~l--~~~gd~Vl~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~-------------~~~d~~~l~~~l~~---~~~ 176 (389)
T 1o4s_A 116 NAFMAL--LDPGDEVIVFSPVWVSYIPQI-ILAGGTVNVVETFMSKN-------------FQPSLEEVEGLLVG---KTK 176 (389)
T ss_dssp HHHHHH--CCTTCEEEEEESCCTTHHHHH-HHTTCEEEEEECCGGGT-------------TCCCHHHHHHTCCT---TEE
T ss_pred HHHHHh--CCCCCEEEEcCCCchhHHHHH-HHcCCEEEEEecCCccC-------------CCCCHHHHHHhccc---Cce
Confidence 999953 344678999999999865443 33443222211110000 1 178999988863 578
Q ss_pred EEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcccccc----CCCCceeehhhhcC-CCcce
Q 011959 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF----GVTPDLTTLGKIIG-GGLPV 322 (474)
Q Consensus 249 ~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~----g~~pdi~t~sK~l~-~G~~i 322 (474)
+|++++++|++|.+.+ .+++++|.++|++||++||+||+|+++ ..+.......+ +....+.++||.++ +|+|+
T Consensus 177 ~v~~~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 255 (389)
T 1o4s_A 177 AVLINSPNNPTGVVYR-REFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRV 255 (389)
T ss_dssp EEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCC
T ss_pred EEEEcCCCCCCCCCCC-HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccce
Confidence 8888877888898765 456999999999999999999999988 54432222222 22222448999998 79999
Q ss_pred EEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeece
Q 011959 323 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 402 (474)
Q Consensus 323 G~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~ 402 (474)
||+++++++++.+. ......+++.+++++.++.++|+.. .+++.++++++.+++.+.|+++ ...+. .+..|.
T Consensus 256 G~l~~~~~~~~~l~---~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~~~~~ 327 (389)
T 1o4s_A 256 GYLISSEKVATAVS---KIQSHTTSCINTVAQYAALKALEVD-NSYMVQTFKERKNFVVERLKKM--GVKFV--EPEGAF 327 (389)
T ss_dssp EEEECCHHHHHHHH---HHHHHHTCSCCHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHT--TCCCC--CCSBSS
T ss_pred EEEEeCHHHHHHHH---HHhhhcccCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHhc--CCeee--cCCcce
Confidence 99999999988876 3334457788999998888877532 2456777788888888888775 22221 123355
Q ss_pred eEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
++++.+. . + ..++.+.|+ ++||++.++. .+.+|+++..+++++++++++|++++++
T Consensus 328 ~~~~~~~-~-----------~---~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~~~~~l~~~l~~l~~~l~~ 388 (389)
T 1o4s_A 328 YLFFKVR-G-----------D---DVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLNS 388 (389)
T ss_dssp EEEEECS-S-----------C---HHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHHHHHHHHHHHHTC
T ss_pred EEEEeCC-C-----------C---HHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 5666652 0 0 256788887 8899998763 2467888888999999999999998864
No 72
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.98 E-value=5.6e-31 Score=263.01 Aligned_cols=337 Identities=12% Similarity=0.114 Sum_probs=234.3
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEACM 169 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~ 169 (474)
+|+++|||.+|. ..++ .+|.+.+++.++++++. .|+. ..+++.++++++.+.++ +.+++++++||++|++
T Consensus 28 ~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~ 104 (388)
T 1j32_A 28 EGIDVCSFSAGE--PDFN-TPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF 104 (388)
T ss_dssp TTCCCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred cCCCEEECCCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHH
Confidence 678899999885 3455 68999999999987642 3322 35677888888876543 4678999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEE
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA 249 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~ 249 (474)
.+++.. ..++++|++.+++||++... +...|..+..++.....+. ..|+++|++.++. ++++
T Consensus 105 ~~~~~~--~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~l~~---~~~~ 166 (388)
T 1j32_A 105 NLMLAM--IEPGDEVIIPAPFWVSYPEM-VKLAEGTPVILPTTVETQF------------KVSPEQIRQAITP---KTKL 166 (388)
T ss_dssp HHHHHH--CCTTCEEEEESSCCTHHHHH-HHHTTCEEEEECCCGGGTT------------CCCHHHHHHHCCT---TEEE
T ss_pred HHHHHh--cCCCCEEEEcCCCChhHHHH-HHHcCCEEEEecCCcccCC------------CCCHHHHHHhcCc---CceE
Confidence 999963 34567899999999985543 3344443322111100000 0179999998863 5788
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccccc-----cCCCCceeehhhhcC-CCcc
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEY-----FGVTPDLTTLGKIIG-GGLP 321 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~-----~g~~pdi~t~sK~l~-~G~~ 321 (474)
|++++++|++|.+.+ .+.+++|.++|++||++||+||+|++| +.+.. ..... .+..+++.++||.++ +|+|
T Consensus 167 v~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r 245 (388)
T 1j32_A 167 LVFNTPSNPTGMVYT-PDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWR 245 (388)
T ss_dssp EEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTC
T ss_pred EEEeCCCCCCCcCCC-HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccc
Confidence 888888888998875 455999999999999999999999988 54432 11111 334455668999998 7999
Q ss_pred eEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee
Q 011959 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (474)
Q Consensus 322 iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (474)
+||+++++++++.+. .....++++.+++++.++.++|+...+ ++..++++++++++.+.|+++ . ++....+.
T Consensus 246 ~G~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~--g~~~~~~~ 319 (388)
T 1j32_A 246 VGFLAGPVPLVKAAT---KIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNAM-P--GLECPKPD 319 (388)
T ss_dssp CEEEECCHHHHHHHH---HHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHTC-T--TCBCCCCC
T ss_pred eEEEEeCHHHHHHHH---HHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhhC-C--CCcccCCC
Confidence 999999999988876 333455788899999999888874321 334555666666666666542 1 22211122
Q ss_pred eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.|.++++.+... .....++.+.|++ +||++.++. ...+|+++.++++++++++++|++++++
T Consensus 320 ~~~~~~~~~~~~------------~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~i~~~~~~l~~~l~~ 386 (388)
T 1j32_A 320 GAFYMFPSIAKT------------GRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYATDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp BTTEECCBCGGG------------TCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEEecCCC------------CCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 344444443210 0012567888886 799998763 3568998889999999999999999875
No 73
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.98 E-value=7.7e-31 Score=265.57 Aligned_cols=337 Identities=13% Similarity=0.034 Sum_probs=231.3
Q ss_pred EEcCCCEEEeccCChhhcc--CCCCCHHHHHHHHHHHHhcCCCCC-C----CHHHHHHHHHHHhhC-C-CCCeEEEeCCH
Q 011959 94 WDIDGNEYIDYVGSWGPAI--IGHADDQVLAALGETMKKGTSFGA-P----CLLENVLAEMVISAV-P-SIEMVRFVNSG 164 (474)
Q Consensus 94 ~d~dG~~~iD~~~~~~~~~--lG~~~p~v~~a~~~~~~~~~~~~~-~----~~~~~~la~~l~~~~-~-~~~~v~~~~sG 164 (474)
.+.+|+.+|||..|.. .. -...+|.|++++.+++++....+| + .+++.++++++...- + ..++|++++||
T Consensus 49 ~~~~~~~~i~l~~g~~-~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~ 127 (427)
T 3dyd_A 49 KPNPNKTMISLSIGDP-TVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGC 127 (427)
T ss_dssp CCCTTSCCEECCCSCT-TTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSH
T ss_pred cccCCCCEEeCCCcCC-CccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCc
Confidence 4456889999998852 22 234789999999999987432222 2 344445555443220 0 36799999999
Q ss_pred HHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-------CHHHHH
Q 011959 165 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-------DVSALE 237 (474)
Q Consensus 165 seA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------d~~~le 237 (474)
++|++.+++.. ..++++|++.+++|+++...+ ...|..+ ..++++ |+++|+
T Consensus 128 t~al~~~~~~l--~~~gd~vl~~~p~~~~~~~~~-~~~g~~~-------------------~~~~~~~~~~~~~d~~~l~ 185 (427)
T 3dyd_A 128 SQAIDLCLAVL--ANPGQNILVPRPGFSLYKTLA-ESMGIEV-------------------KLYNLLPEKSWEIDLKQLE 185 (427)
T ss_dssp HHHHHHHHHHH--CCTTCEEEEEESCCTHHHHHH-HHTTCEE-------------------EEEEEEGGGTTEECHHHHH
T ss_pred HHHHHHHHHHh--cCCCCEEEEcCCCchhHHHHH-HHcCCEE-------------------EEEecccccCCCCCHHHHH
Confidence 99999999963 345688999999998855433 3333322 222211 789998
Q ss_pred HHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccccccCCCCcee---eh
Q 011959 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTPDLT---TL 312 (474)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~pdi~---t~ 312 (474)
+.+++ ++++|+++.++|++|.+.+ .+++++|+++|++||+++|+||+|.+| +.+.. .....++..++++ +|
T Consensus 186 ~~l~~---~~~~v~i~~p~nptG~~~~-~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~ 261 (427)
T 3dyd_A 186 YLIDE---KTACLIVNNPSNPCGSVFS-KRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGL 261 (427)
T ss_dssp SSCCT---TEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEES
T ss_pred HHhcc---CCCEEEEECCCCCCCCCCC-HHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeec
Confidence 88763 4667777666888888765 555999999999999999999999999 66643 2444555556665 89
Q ss_pred hhhcC-CCcceEEEEec-------HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHH
Q 011959 313 GKIIG-GGLPVGAYGGR-------RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELT 381 (474)
Q Consensus 313 sK~l~-~G~~iG~~~~~-------~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~ 381 (474)
||.++ +|+|+||++++ +++++.+.. . ...+++.|+++++++.++|+.... ++..++++++.+++.
T Consensus 262 sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~---~-~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~ 337 (427)
T 3dyd_A 262 AKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVK---L-SQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCY 337 (427)
T ss_dssp TTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHH---H-HHHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcCcceEEEEecCcchhhHHHHHHHHHH---H-HhccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 99987 69999999887 567776652 1 223678899999999999985322 344555555666666
Q ss_pred HHHHHHhhhcCCeeEE-eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC----CcceEEecCC
Q 011959 382 QGIIDAGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAH 455 (474)
Q Consensus 382 ~~L~~~~~~~~~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~----~~~~~~~~~~ 455 (474)
+.|++ ++....+ +..|+++++.+..... ++.....++.+.|+ ++||++.++. ...+|+++.+
T Consensus 338 ~~L~~----~~g~~~~~p~~g~~~~~~l~~~~~--------~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~~~ 405 (427)
T 3dyd_A 338 GALAA----IPGLRPVRPSGAMYLMVGIEMEHF--------PEFENDVEFTERLVAEQSVHCLPATCFEYPNFIRVVITV 405 (427)
T ss_dssp HHHHH----STTEEEECCSBTTEEEEEECGGGC--------TTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEESCS
T ss_pred HHHhc----CCCceecCCCeeEEEEEecCHhhc--------CCCCCHHHHHHHHHHHCCEEEECCcccCCCCeEEEEECC
Confidence 66654 3323333 4456677777642110 11111246777775 7899998863 3467999999
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 011959 456 SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 456 t~e~i~~~l~~l~~~~~~ 473 (474)
++++|++++++|++++++
T Consensus 406 ~~e~i~~~l~~l~~~l~~ 423 (427)
T 3dyd_A 406 PEVMMLEACSRIQEFCEQ 423 (427)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999999865
No 74
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.98 E-value=6.3e-31 Score=262.76 Aligned_cols=333 Identities=15% Similarity=0.134 Sum_probs=232.0
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCe-EEEeCCHHHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEM-VRFVNSGTEACMG 170 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~la~~l~~~~~---~~~~-v~~~~sGseA~~~ 170 (474)
.++|||..+. ..++ .+|++.+++.+++++.. .|+ +..+++.++++++.+.++ ..++ +++++||++|++.
T Consensus 26 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~ 102 (389)
T 1gd9_A 26 KDVISLGIGE--PDFD-TPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLM 102 (389)
T ss_dssp SSCEECCCCS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHH
T ss_pred cCeEecCCCC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHH
Confidence 3578888875 3455 68999999999997642 333 235677888888876543 4678 9999999999999
Q ss_pred HHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-CHHHHHHHHhcCCCCeEE
Q 011959 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-DVSALENLFENNKGEIAA 249 (474)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-d~~~le~~l~~~~~~~a~ 249 (474)
+++.. ..++++|++.+++||+.... +...|..+..++.....+ +. |+++|++.++. ++++
T Consensus 103 ~~~~~--~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~-------------~~~d~~~l~~~l~~---~~~~ 163 (389)
T 1gd9_A 103 GLSAF--LKDGEEVLIPTPAFVSYAPA-VILAGGKPVEVPTYEEDE-------------FRLNVDELKKYVTD---KTRA 163 (389)
T ss_dssp HHTTT--CCTTCEEEEEESCCTTHHHH-HHHHTCEEEEEECCGGGT-------------TCCCHHHHHHHCCT---TEEE
T ss_pred HHHHh--CCCCCEEEEcCCCchhHHHH-HHHCCCEEEEeccCCccC-------------CCCCHHHHHHhcCc---CceE
Confidence 99842 33467899999999996543 334444332211110000 11 79999998863 5788
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC-Ccccccc-CC-CCc--eeehhhhcC-CCcce
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYF-GV-TPD--LTTLGKIIG-GGLPV 322 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~-g~-~pd--i~t~sK~l~-~G~~i 322 (474)
|++++++|++|.+.+ .+.+++|.++|++||++||+||+|+++ +.+. ......+ +. ..| +.++||.++ +|+|+
T Consensus 164 v~~~~~~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~ 242 (389)
T 1gd9_A 164 LIINSPCNPTGAVLT-KKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRL 242 (389)
T ss_dssp EEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCC
T ss_pred EEEECCCCCCCcCCC-HHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccce
Confidence 888777888898765 556999999999999999999999988 5543 2222222 21 234 448999998 79999
Q ss_pred EEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe
Q 011959 323 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (474)
Q Consensus 323 G~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (474)
||+++++++++.+.. .....+++.|++++.++.++|+...+ ++..++++++.+++.+.|++. ++....+
T Consensus 243 G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~ 315 (389)
T 1gd9_A 243 GFVAAPSWIIERMVK---FQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM----GLPTVKP 315 (389)
T ss_dssp EEEECCHHHHHHHHH---HHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCCCC
T ss_pred EEEEECHHHHHHHHH---HHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHc----CCeecCC
Confidence 999999999988862 33445678899999999888874322 334455556666666666653 3222223
Q ss_pred eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
..|.++++.+.... ....++.+.|+ ++||++.++. ...+|+++..+++++++++++|++++
T Consensus 316 ~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~~ 383 (389)
T 1gd9_A 316 KGAFYIFPRIRDTG------------LTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYATAYEKLEEAMDRMERVL 383 (389)
T ss_dssp CBTTEECCBCGGGT------------CCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHHHHHHHH
T ss_pred CeeeEEEEeccCCC------------CCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence 33555555553200 01256888888 8999998763 34689988889999999999999998
Q ss_pred hh
Q 011959 472 RQ 473 (474)
Q Consensus 472 ~~ 473 (474)
++
T Consensus 384 ~~ 385 (389)
T 1gd9_A 384 KE 385 (389)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 75
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.98 E-value=6.5e-31 Score=261.97 Aligned_cols=326 Identities=17% Similarity=0.148 Sum_probs=229.1
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhc
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT 179 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~ 179 (474)
+|||.++. ..++ .+|.+.+++.+++++...|+. .....+|.+.++++++ +.+++++++||++|++.+++.+ ..
T Consensus 27 ~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y~~-~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~--~~ 100 (381)
T 1v2d_A 27 AVNLGQGF--PSNP-PPPFLLEAVRRALGRQDQYAP-PAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSL--VG 100 (381)
T ss_dssp CEECCCCS--CSSC-CCHHHHHHHHHHTTTSCSCCC-TTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH--CC
T ss_pred eEEecCCC--CCCC-CCHHHHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHh--CC
Confidence 68888875 3455 689999999999876333322 2234567777777665 4578999999999999999963 45
Q ss_pred CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCC
Q 011959 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259 (474)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~ 259 (474)
++++|++.+++||++.. .+...|..+..++....+ +.. ..|+++|++.++ +++++|++++++|++
T Consensus 101 ~gd~Vl~~~~~~~~~~~-~~~~~g~~~~~v~~~~~~--------~~~---~~d~~~l~~~l~---~~~~~v~~~~~~npt 165 (381)
T 1v2d_A 101 PGDEVVVLEPFFDVYLP-DAFLAGAKARLVRLDLTP--------EGF---RLDLSALEKALT---PRTRALLLNTPMNPT 165 (381)
T ss_dssp TTCEEEEEESCCTTHHH-HHHHTTCEEEEEECEEET--------TEE---ECCHHHHHTTCC---TTEEEEEEESSCTTT
T ss_pred CCCEEEEcCCCchhHHH-HHHHcCCEEEEEeCCCCC--------ccC---CcCHHHHHHhcC---cCCEEEEECCCCCCC
Confidence 66889999999998654 333344322211110000 000 127999988875 367888888888889
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccc-c-ccCCCCceeehhhhcC-CCcceEEEEecHHHHHh
Q 011959 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQ-E-YFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEM 334 (474)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~-~-~~g~~pdi~t~sK~l~-~G~~iG~~~~~~~i~~~ 334 (474)
|.+.+ .+++++|.++|++||++||+||+|++| . |.. ... . ..+..+++.++||.++ +|+|+||+++++++++.
T Consensus 166 G~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~ 243 (381)
T 1v2d_A 166 GLVFG-ERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPR 243 (381)
T ss_dssp CCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHH
T ss_pred CCccC-HHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHHHHHH
Confidence 98765 456999999999999999999999988 4 421 111 1 2455666779999998 79999999999999888
Q ss_pred hcCCCCcccccCCCCChHHHHHHHHHHHHh--cC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEec
Q 011959 335 VAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410 (474)
Q Consensus 335 ~~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~ 410 (474)
+. ......+++.++++++++.++|+.. ++ ++..++++++.+++.+.|++. ++....+..|.++++.+..
T Consensus 244 ~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~ 316 (381)
T 1v2d_A 244 LA---GMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAM----GLRVYVPEGTYFLMAELPG 316 (381)
T ss_dssp HH---HHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT----TCCEECCSBSSEEEEECTT
T ss_pred HH---HHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHC----CCEecCCCcceEEEEecCh
Confidence 76 2334457788999999999999865 33 445666677777777777663 3332223335666666531
Q ss_pred CCCcCcccccccchHHHHHHHHHHHHCCeEecccC--------CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
. + +.+.+.++||++.++. ...+|+++..+++++++++++|++++++
T Consensus 317 ~----------------~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~~~~~i~~~~~~l~~~l~~ 370 (381)
T 1v2d_A 317 W----------------D-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCKTEEELHLALERLGRVVNS 370 (381)
T ss_dssp C----------------C-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCSCHHHHHHHHHHHHHHC--
T ss_pred H----------------h-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 1 1 5566779999998752 3467888877999999999999988754
No 76
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.98 E-value=1.1e-31 Score=269.14 Aligned_cols=332 Identities=15% Similarity=0.125 Sum_probs=224.8
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVL 172 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al 172 (474)
++++|||.++.. ++.|++++.+.+++.+++++. ..|+. .....+|.+.++++++ ..++|++++||++|++.++
T Consensus 31 ~~~~i~l~~g~~-~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~-~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~ 108 (397)
T 2zyj_A 31 RPGILSFAGGLP-APELFPKEEAAEAAARILREKGEVALQYSP-TEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVG 108 (397)
T ss_dssp STTCEEESSCCC-CGGGCCHHHHHHHHHHHHHHHHHHHTSCCC-TTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHH
T ss_pred CCCceecCCCCC-CchhCCHHHHHHHHHHHHHhcchhhhCCCC-CCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHH
Confidence 456899988764 456788999999999988752 23322 1223445555555543 4579999999999999999
Q ss_pred HHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC----CCHHHHHHHHhcCCCCeE
Q 011959 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFENNKGEIA 248 (474)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~----~d~~~le~~l~~~~~~~a 248 (474)
+.. ..++++|++.+++||+....+. ..|..+ +.+|. .|+++|++.++++ +++
T Consensus 109 ~~~--~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~-------------------~~~~~~~~~~d~~~l~~~l~~~--~~~ 164 (397)
T 2zyj_A 109 KVF--LDEGSPVLLEAPSYMGAIQAFR-LQGPRF-------------------LTVPAGEEGPDLDALEEVLKRE--RPR 164 (397)
T ss_dssp HHH--CCTTCEEEEEESCCHHHHHHHH-TTCCEE-------------------EEEEEETTEECHHHHHHHHHHC--CCS
T ss_pred HHh--CCCCCEEEEeCCCcHHHHHHHH-HcCCEE-------------------EecCcCCCCCCHHHHHHHHhhc--CCe
Confidence 953 2345789999999998654432 233322 22221 2899999999753 456
Q ss_pred EE-EEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccccccCCC------CceeehhhhcCCC
Q 011959 249 AI-ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVT------PDLTTLGKIIGGG 319 (474)
Q Consensus 249 ~v-i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~------pdi~t~sK~l~~G 319 (474)
+| +++.++|++|.+.+ .+++++|.++|++||++||+||+|++| +.|.. .....++.. ..+.++||++++|
T Consensus 165 ~v~~~~~~~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G 243 (397)
T 2zyj_A 165 FLYLIPSFQNPTGGLTP-LPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPG 243 (397)
T ss_dssp CEEECCBSCTTTCCBCC-HHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGG
T ss_pred EEEECCCCcCCCCCcCC-HHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccccc
Confidence 66 45556777888765 556999999999999999999999988 65542 222223222 2345899999988
Q ss_pred cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeE
Q 011959 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-E--PGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (474)
Q Consensus 320 ~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (474)
+|+||+++++++++.+.. .....+++.|++++.++.++|+... + +...++++++.+++.+.|++.... ++...
T Consensus 244 ~r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-g~~~~ 319 (397)
T 2zyj_A 244 LRVAFAVAHPEALQKLVQ---AKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPK-EVRYT 319 (397)
T ss_dssp GCCEEEECCHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCT-TSEEC
T ss_pred ceeEEEecCHHHHHHHHH---HHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CeEEc
Confidence 999999999999888762 2334456779999999888886321 0 223344444555555555443110 22222
Q ss_pred EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--------CcceEEecCC-cHHHHHHHHHHH
Q 011959 397 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAH-SSDDIQHTITAA 467 (474)
Q Consensus 397 v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~~~~~~-t~e~i~~~l~~l 467 (474)
.+..|.++++.+... ....++.+.|.++||++.++. ...+|+++.. +++++++++++|
T Consensus 320 ~~~~g~~~~~~~~~~-------------~~~~~~~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l 386 (397)
T 2zyj_A 320 RPKGGMFVWMELPKG-------------LSAEGLFRRALEENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRL 386 (397)
T ss_dssp CCSBSSEEEEECSTT-------------CCHHHHHHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHH
T ss_pred cCCccEEEEEEcCCC-------------CCHHHHHHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHH
Confidence 245577788777421 012578889999999998752 2457887665 799999999999
Q ss_pred HHHHhh
Q 011959 468 EKVLRQ 473 (474)
Q Consensus 468 ~~~~~~ 473 (474)
++++++
T Consensus 387 ~~~l~~ 392 (397)
T 2zyj_A 387 GRALKG 392 (397)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998865
No 77
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.98 E-value=2.1e-31 Score=269.51 Aligned_cols=336 Identities=13% Similarity=0.160 Sum_probs=236.2
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc----CCCCC---CCHHHHHHHHHHHhhCC----CCCeEEEeCCHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGA---PCLLENVLAEMVISAVP----SIEMVRFVNSGTE 166 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~---~~~~~~~la~~l~~~~~----~~~~v~~~~sGse 166 (474)
++++|||.+|.. ++.|++++.+.+++.+++++. ..|+. ..+++.++++++.++++ +.++|++++||++
T Consensus 42 ~~~~idl~~g~~-~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~ 120 (425)
T 1vp4_A 42 DKDAISFGGGVP-DPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQ 120 (425)
T ss_dssp STTCEECCCCSC-CGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHH
T ss_pred CCCceeCCCCCC-CcccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHH
Confidence 557899998864 456889999999999998752 33432 35778888888866533 3578999999999
Q ss_pred HHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC----CCHHHHHHHHhc
Q 011959 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFEN 242 (474)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~----~d~~~le~~l~~ 242 (474)
|++.+++.. ..++++|++.+++||++...+. ..|..+ +.+|. .|+++|++.+++
T Consensus 121 al~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~-~~g~~~-------------------~~v~~~~~~~d~~~l~~~l~~ 178 (425)
T 1vp4_A 121 ALDLIGKLF--LDDESYCVLDDPAYLGAINAFR-QYLANF-------------------VVVPLEDDGMDLNVLERKLSE 178 (425)
T ss_dssp HHHHHHHHH--CCTTCEEEEEESCCHHHHHHHH-TTTCEE-------------------EEEEEETTEECHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCCEEEEeCCCcHHHHHHHH-HcCCEE-------------------EEeccCCCCCCHHHHHHHHHh
Confidence 999999942 2345789999999998654432 233322 22221 289999998874
Q ss_pred C-----CCCeEEEE-EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccccccCCCC---ceee
Q 011959 243 N-----KGEIAAII-LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFGVTP---DLTT 311 (474)
Q Consensus 243 ~-----~~~~a~vi-~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g~~p---di~t 311 (474)
. +.++++|+ +..++|++|.+.+ .+++++|.++|++||++||+||+|++| +.+.. .....++..+ .+.+
T Consensus 179 ~~~~~~~~~~~~v~~~~~~~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s 257 (425)
T 1vp4_A 179 FDKNGKIKQVKFIYVVSNFHNPAGVTTS-LEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNT 257 (425)
T ss_dssp HHHTTCGGGEEEEEEECSSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEE
T ss_pred hhhcccCCCceEEEECCCCCCCCCCcCC-HHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEec
Confidence 1 12577774 5556677888765 556999999999999999999999988 55532 2222222222 2458
Q ss_pred hhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHh--cC--CCHHHHHHHHHHHHHHHHHHH
Q 011959 312 LGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL--KE--PGTYEYLNKITGELTQGIIDA 387 (474)
Q Consensus 312 ~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~--~~--~~~~~~~~~~~~~l~~~L~~~ 387 (474)
+||++++|+|+||+++++++++.+.. .....+++.|+++++++.++|+.. ++ +...++++++.+++.+.|++.
T Consensus 258 ~sK~~~~G~r~G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 334 (425)
T 1vp4_A 258 FSKVLAPGLRIGMVAGSKEFIRKIVQ---AKQSADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEY 334 (425)
T ss_dssp STTTTCGGGCEEEEECCHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccceEEEeeCHHHHHHHHH---HhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999989999999999999888762 233445677999999999999864 11 345556667777777777665
Q ss_pred hhhc-CCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--------CcceEEecCC-cH
Q 011959 388 GKKA-GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--------FEAGFTSLAH-SS 457 (474)
Q Consensus 388 ~~~~-~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------~~~~~~~~~~-t~ 457 (474)
...+ ++....+..|.++++.+.... + ..++.+.|+++||++.++. ...+|+++.. ++
T Consensus 335 ~~~~~g~~~~~~~~g~~~~~~~~~~~----------~---~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~ 401 (425)
T 1vp4_A 335 FSDIPGVKWVKSEGGLFIWLTLPEGF----------D---TWEMFEYAKRKKVFYVPGRVFKVYDEPSPSMRLSFCLPPD 401 (425)
T ss_dssp STTSTTCEECCCSBSSEEEEECCTTC----------C---TTTTHHHHHHHTEECEEGGGGCTTCCCCSEEEEECSSSCH
T ss_pred CCCCCceEEecCCccEEEEEEcCCCC----------C---HHHHHHHHHHCCCEEECchhhcCCCCCCCeEEEEeCCCCH
Confidence 2211 222222455778888774310 0 1357788888899998752 2457887665 79
Q ss_pred HHHHHHHHHHHHHHhh
Q 011959 458 DDIQHTITAAEKVLRQ 473 (474)
Q Consensus 458 e~i~~~l~~l~~~~~~ 473 (474)
+++++++++|++++++
T Consensus 402 e~i~~~l~~l~~~l~~ 417 (425)
T 1vp4_A 402 EKIVEGIKRLREVVLE 417 (425)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998864
No 78
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.98 E-value=2.2e-31 Score=267.61 Aligned_cols=335 Identities=12% Similarity=0.082 Sum_probs=232.3
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc--CCCC---CCCHHHHHHHHHHHhhCC---CC-CeEEEeCCHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG---APCLLENVLAEMVISAVP---SI-EMVRFVNSGTE 166 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~---~~~~~~~~la~~l~~~~~---~~-~~v~~~~sGse 166 (474)
..|+++|||.+|. +.+| .+|.+.+++.+++++. ..|+ ...+++.++++++.+.++ .+ ++|++++||++
T Consensus 44 ~~g~~~idl~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~ 120 (404)
T 2o1b_A 44 HGPLPLINMAVGI--PDGP-TPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKN 120 (404)
T ss_dssp CCSSCCEECCCCS--CSSC-CCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHH
T ss_pred cCCCCEEecCCcC--CCCC-CCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHH
Confidence 3578899999886 3566 6899999999987542 1232 235677777777766555 22 68999999999
Q ss_pred HHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCC
Q 011959 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (474)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (474)
|++.+++.. ..++++|++.+++||++...+ ...|..+..++... .++ ..|+++|++.++. +
T Consensus 121 al~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~-~~~g~~~~~v~~~~-~~~------------~~d~~~l~~~l~~---~ 181 (404)
T 2o1b_A 121 GLVAVPTCV--INPGDYVLLPDPGYTDYLAGV-LLADGKPVPLNLEP-PHY------------LPDWSKVDSQIID---K 181 (404)
T ss_dssp HHHHHHHHH--CCTTCEEEEEESCCSSHHHHH-HHTTCEEEEEECCT-TTC------------CCCGGGSCHHHHH---H
T ss_pred HHHHHHHHh--cCCCCEEEEcCCCchhHHHHH-HHCCCEEEEeccCc-ccC------------cCCHHHHHHhhcc---C
Confidence 999999952 234578999999999966544 33444332221111 111 0267888888862 5
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc-ccc---cCCCCceeehhhhcC-CCc
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEY---FGVTPDLTTLGKIIG-GGL 320 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~---~g~~pdi~t~sK~l~-~G~ 320 (474)
+++|+++.++|++|.+.+ .+++++|.++|++||++||+||+|++| +.+.... ... .+....+.++||+++ +|+
T Consensus 182 ~~~v~l~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~ 260 (404)
T 2o1b_A 182 TKLIYLTYPNNPTGSTAT-KEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGF 260 (404)
T ss_dssp EEEEEECSSCTTTCCCCC-HHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGG
T ss_pred ceEEEEcCCCCCCCccCC-HHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchh
Confidence 788888766777888765 556999999999999999999999988 5443211 111 122234558999998 899
Q ss_pred ceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe
Q 011959 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (474)
|+||+++++++++.+. ......+++.|+++++++.++|+..++ +...++++++.+++.+.|++. ++....+
T Consensus 261 r~G~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~ 333 (404)
T 2o1b_A 261 RVGFAVGNKDMIQALK---KYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAKA----DLPFVHA 333 (404)
T ss_dssp CCEEEEECHHHHHHHH---HHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT----TCCEECC
T ss_pred heEeEecCHHHHHHHH---HHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc----CCeecCC
Confidence 9999999999998886 233445678899999999999876321 334455555666666666553 4332222
Q ss_pred eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
..|.++++.+... . ...++.+.|+ ++||++.++. ...+|+++..+++++++++++|++++
T Consensus 334 ~~g~~~~~~~~~~-~------------~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~~~e~l~~~l~~l~~~l 400 (404)
T 2o1b_A 334 KGGIYVWLETPPG-Y------------DSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLALDDQKLDEAAIRLTELA 400 (404)
T ss_dssp CBSSEEEEECCTT-C------------CHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCSCTTHHHHHHHHHHGGG
T ss_pred CcceEEEEeCCCC-C------------CHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence 3355677776421 0 1246778877 5799998763 34678988889999999999999887
Q ss_pred hh
Q 011959 472 RQ 473 (474)
Q Consensus 472 ~~ 473 (474)
++
T Consensus 401 ~~ 402 (404)
T 2o1b_A 401 YL 402 (404)
T ss_dssp GG
T ss_pred Hh
Confidence 65
No 79
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.98 E-value=1.4e-30 Score=260.09 Aligned_cols=329 Identities=15% Similarity=0.113 Sum_probs=227.9
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCCC---CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGA---PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGV 171 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~---~~~~~~~la~~l~~~~~---~~~-~v~~~~sGseA~~~a 171 (474)
.+|||..+. ..++ .+|.+.+++.++++++ ..|+. ..+++.++++++.+.++ +.+ ++++++||++|++.+
T Consensus 31 ~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~ 107 (386)
T 1u08_A 31 QAINLSQGF--PDFD-GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAA 107 (386)
T ss_dssp TCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHH
T ss_pred CeEEecCCC--CCCC-CCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHH
Confidence 468888775 3455 6899999999998763 23322 35677788888776543 466 999999999999999
Q ss_pred HHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEE
Q 011959 172 LRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (474)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (474)
++.. ..++++|++.+++||+... .+...|..+..++.....+ ..|+++|++.++ +++++|+
T Consensus 108 ~~~~--~~~gd~vl~~~p~~~~~~~-~~~~~g~~~~~v~~~~~~~-------------~~d~~~l~~~l~---~~~~~v~ 168 (386)
T 1u08_A 108 ITAL--VRNGDEVICFDPSYDSYAP-AIALSGGIVKRMALQPPHF-------------RVDWQEFAALLS---ERTRLVI 168 (386)
T ss_dssp HHHH--CCTTCEEEEEESCCTTHHH-HHHHTTCEEEEEECCTTTC-------------CCCHHHHHHHCC---TTEEEEE
T ss_pred HHHh--CCCCCEEEEeCCCchhHHH-HHHHcCCEEEEeecCcccC-------------cCCHHHHHHhhc---ccCEEEE
Confidence 9953 3446789999999998554 3333444322211110000 028999999885 3678888
Q ss_pred EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc----ccc-ccCCCCceeehhhhcC-CCcceEE
Q 011959 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG----AQE-YFGVTPDLTTLGKIIG-GGLPVGA 324 (474)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~----~~~-~~g~~pdi~t~sK~l~-~G~~iG~ 324 (474)
+++++|++|.+.+ .+++++|.++|++||++||+||+|++| +.|... ... ..+....+.++||.++ +|+|+||
T Consensus 169 l~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 247 (386)
T 1u08_A 169 LNTPHNPSATVWQ-QADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGY 247 (386)
T ss_dssp EESSCTTTCCCCC-HHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEE
T ss_pred EeCCCCCCCccCC-HHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEE
Confidence 8888888898775 556999999999999999999999988 554311 111 2344455668999999 7999999
Q ss_pred EEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeece
Q 011959 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG 402 (474)
Q Consensus 325 ~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~ 402 (474)
+++++++++.+. ......+++.++++++++.++|+..++ ++..++++++.+++.+.|+ +.++....+..|.
T Consensus 248 ~~~~~~~~~~l~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~----~~g~~~~~~~~g~ 320 (386)
T 1u08_A 248 CVAPAPISAEIR---KVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALN----ESRLEILPCEGTY 320 (386)
T ss_dssp EECCHHHHHHHH---HHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTT----SSSCEECCCCBSS
T ss_pred EEcCHHHHHHHH---HHHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH----HCCCeecCCCceE
Confidence 999999998886 233445788899999999999986421 3444555555555555544 3344332233466
Q ss_pred eEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC--------CcceEEecCCcHHHHHHHHHHHHH
Q 011959 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ--------FEAGFTSLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~--------~~~~~~~~~~t~e~i~~~l~~l~~ 469 (474)
++++.+.... . ....++.+.|+ ++||++.++. ...+|+++..++++|++++++|++
T Consensus 321 ~~~~~~~~~~--~---------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 321 FLLVDYSAVS--T---------LDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQ 385 (386)
T ss_dssp EEEEECTTTC--C---------SCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCSCHHHHHHHHHHHTT
T ss_pred EEEEecCCCC--C---------CCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcCCHHHHHHHHHHHhh
Confidence 7777764210 0 01246777776 6899998752 245788888899999999999864
No 80
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.97 E-value=8.9e-32 Score=269.48 Aligned_cols=335 Identities=15% Similarity=0.082 Sum_probs=215.5
Q ss_pred EEEEcCCCEEEeccCChhhccCC--CCCHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC---CCCeEEE-
Q 011959 92 HMWDIDGNEYIDYVGSWGPAIIG--HADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP---SIEMVRF- 160 (474)
Q Consensus 92 ~~~d~dG~~~iD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~---~~~~v~~- 160 (474)
.+.+..|+++|||.+|.+.++.+ +.+|.+.+++.+++++...++| ..++++++++++..... ..++|++
T Consensus 19 ~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~ 98 (396)
T 2q7w_A 19 LFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTA 98 (396)
T ss_dssp ---------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred HHhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEE
Confidence 33444577899999997655666 4679999999998875322222 23555666666543321 2678988
Q ss_pred -eCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC---C----C
Q 011959 161 -VNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF---N----D 232 (474)
Q Consensus 161 -~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~---~----d 232 (474)
++||++|++.++++++.+.++++|++.+++||++...+.. .|.. +..+|. + |
T Consensus 99 ~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~-~g~~-------------------~~~~~~~~~~~~~~d 158 (396)
T 2q7w_A 99 QTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNS-AGLE-------------------VREYAYYDAENHTLD 158 (396)
T ss_dssp EESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHH-TTCE-------------------EEEEECEETTTTEEC
T ss_pred ecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHH-cCCc-------------------eEEEecccCCCCCcC
Confidence 9999999999998765556778999999999996544433 3332 222222 1 7
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC--CCccccccCCC-Cc
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQEYFGVT-PD 308 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g--~~~~~~~~g~~-pd 308 (474)
+++|++.+++++.+++++++..++|++|.+.+ .+++++|+++|++||++||+||+|++| +.+ .......+... ++
T Consensus 159 ~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (396)
T 2q7w_A 159 FDALINSLNEAQAGDVVLFHGCCHNPTGIDPT-LEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKE 237 (396)
T ss_dssp HHHHHHHHTTCCTTCEEEEECSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSC
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCc
Confidence 99999999765334677777777788887665 555999999999999999999999988 543 22222222211 22
Q ss_pred ---eeehhhhcC-CCcceEEEEe---cHH----HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHh------cC--CCH
Q 011959 309 ---LTTLGKIIG-GGLPVGAYGG---RRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGT 369 (474)
Q Consensus 309 ---i~t~sK~l~-~G~~iG~~~~---~~~----i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~ 369 (474)
+.++||+++ +|+|+||+++ +++ +++.+. ......+.+.|+++++++.++|+.. .+ ++.
T Consensus 238 ~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~ 314 (396)
T 2q7w_A 238 LIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMK---AAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDM 314 (396)
T ss_dssp EEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHH---HHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC
T ss_pred EEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHH---HHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 348999999 7999999986 563 444443 1112222344899999988888643 11 334
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcce
Q 011959 370 YEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG 449 (474)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~ 449 (474)
.++++++.+++.+.|++.....++....+..|.++++.+. ...+.+.+.++||++.++ +
T Consensus 315 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gv~v~~~----~ 373 (396)
T 2q7w_A 315 RQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLT-----------------KEQVLRLREEFGVYAVAS----G 373 (396)
T ss_dssp -CHHHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEECCTT----C
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecCC-----------------HHHHHHHHHhcCeeecCC----c
Confidence 5556666777777776643110122112233455444321 034556667889999874 5
Q ss_pred EEecCC-cHHHHHHHHHHHHHHH
Q 011959 450 FTSLAH-SSDDIQHTITAAEKVL 471 (474)
Q Consensus 450 ~~~~~~-t~e~i~~~l~~l~~~~ 471 (474)
|+++.. |++++++++++|++++
T Consensus 374 Ris~~~~~~e~i~~~~~~l~~~l 396 (396)
T 2q7w_A 374 RVNVAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp EEEGGGCCTTTHHHHHHHHHHHC
T ss_pred eEEEeecCHHHHHHHHHHHHhcC
Confidence 777654 9999999999998763
No 81
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.97 E-value=2.8e-30 Score=259.80 Aligned_cols=351 Identities=13% Similarity=0.048 Sum_probs=233.7
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhc--CCCCC---CCHHHHHHHHHHHhhCC---CC-CeEEEeCCHHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFGA---PCLLENVLAEMVISAVP---SI-EMVRFVNSGTEACM 169 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~~---~~~~~~~la~~l~~~~~---~~-~~v~~~~sGseA~~ 169 (474)
..+|||..|. ..++ .+|.|++++.+++.+. ..|+. ..+++.++++++.+.++ .. ++|++++||++|++
T Consensus 23 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~ 99 (410)
T 3e2y_A 23 PSVVNLGQGF--PDIS-PPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLF 99 (410)
T ss_dssp TTSEECSSCC--CCSC-CCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred CCeEEecCCC--CCCC-CCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 4568888774 2233 6899999999998753 22332 34778888888876553 34 79999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCC--CCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~--~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
.+++.. ..+++.|++.+++|+++... +...|..+..++... ..+.. ....... -|+++|++.++ +++
T Consensus 100 ~~~~~~--~~~gd~vl~~~p~~~~~~~~-~~~~g~~~~~~~~~~~~~~g~~--~~~~~~~---~d~~~l~~~~~---~~~ 168 (410)
T 3e2y_A 100 NSIQGL--VDPGDEVIIMVPFYDCYEPM-VRMAGAVPVFIPLRSKPTDGMK--WTSSDWT---FDPRELESKFS---SKT 168 (410)
T ss_dssp HHHHHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEECEECCCCSSC--CBGGGEE---CCHHHHHTTCC---TTE
T ss_pred HHHHHh--cCCCCEEEEeCCCchhhHHH-HHHcCCEEEEEecccccccccc--ccccCCc---CCHHHHHhhcC---CCc
Confidence 999953 34567899999999886543 333444322211110 00000 0000111 17899988875 368
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccccccC----CCCceeehhhhcC-CCc
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEYFG----VTPDLTTLGKIIG-GGL 320 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~~g----~~pdi~t~sK~l~-~G~ 320 (474)
++|++++++|++|.+.+..+ +++|+++|++||++||+||+|++| +.+.. .....+. ...++.++||.++ +|+
T Consensus 169 ~~v~~~~p~nptG~~~~~~~-l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~ 247 (410)
T 3e2y_A 169 KAIILNTPHNPLGKVYTRQE-LQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGW 247 (410)
T ss_dssp EEEEEESSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGG
T ss_pred eEEEEeCCCCCCCcCcCHHH-HHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCc
Confidence 88899888888998875444 999999999999999999999988 66532 2222222 2233458999999 899
Q ss_pred ceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHHHHHHHhhhcCCee
Q 011959 321 PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-----LKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (474)
Q Consensus 321 ~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (474)
|+||+++++++++.+. ......+++.++++++++.++|+. ....+..+++.+..+..++.|.+.+.++++..
T Consensus 248 r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~ 324 (410)
T 3e2y_A 248 KLGWSIGPAHLIKHLQ---TVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKP 324 (410)
T ss_dssp CCEEEECCHHHHHHHH---HHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred eEEEEEECHHHHHHHH---HHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCee
Confidence 9999999999998886 344556888999999999999974 11244455555555555555555444456555
Q ss_pred EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC-----------CcceEEecCCcHHHHHHH
Q 011959 396 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------FEAGFTSLAHSSDDIQHT 463 (474)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~-----------~~~~~~~~~~t~e~i~~~ 463 (474)
..+..|.++++.+..... .+.. ...+.....++.+.++ ++||++.++. ...+|+++.+++++|+++
T Consensus 325 ~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~~~e~l~~~ 402 (410)
T 3e2y_A 325 IVPDGGYFIIADVSSLGA-DLSD-MNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIKKDSTLDAA 402 (410)
T ss_dssp EBCSBSSEEEEECGGGCC-CCTT-CCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCCCHHHHHHH
T ss_pred cCCCccEEEEEEchhhhc-cccc-ccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcCCHHHHHHH
Confidence 556677788877753210 0000 0000111235566554 6799998753 145789999999999999
Q ss_pred HHHHHH
Q 011959 464 ITAAEK 469 (474)
Q Consensus 464 l~~l~~ 469 (474)
+++|++
T Consensus 403 l~~l~~ 408 (410)
T 3e2y_A 403 EEIFRA 408 (410)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999975
No 82
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.97 E-value=2.4e-30 Score=260.64 Aligned_cols=334 Identities=16% Similarity=0.118 Sum_probs=231.8
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHHHhc-CCCCC---CCHHHHHHHHHHHhhCC---CCC-eEEEeCCHHHHHHHHH
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKG-TSFGA---PCLLENVLAEMVISAVP---SIE-MVRFVNSGTEACMGVL 172 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~---~~~~~~~la~~l~~~~~---~~~-~v~~~~sGseA~~~al 172 (474)
+|||..+. ..++ .+|.+.+++.+++++. ..|+. ..+++.++++++.+.++ ..+ +|++++||++|++.++
T Consensus 27 ~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~ 103 (411)
T 2o0r_A 27 AVNLGQGF--PDED-GPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAV 103 (411)
T ss_dssp CEESSCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHH
T ss_pred eeeccCcC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHH
Confidence 68888875 3455 6899999999999763 33332 34677888888876653 356 9999999999999999
Q ss_pred HHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEE
Q 011959 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (474)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (474)
+.. ..++++|++.+++||+.... +...|..+..++.... ..... .|+++|++.++. ++++|++
T Consensus 104 ~~~--~~~gd~Vl~~~~~y~~~~~~-~~~~g~~~~~v~~~~~--------~~~~~---~d~~~l~~~l~~---~~~~v~l 166 (411)
T 2o0r_A 104 LGL--VEPGSEVLLIEPFYDSYSPV-VAMAGAHRVTVPLVPD--------GRGFA---LDADALRRAVTP---RTRALII 166 (411)
T ss_dssp HHH--CCTTCEEEEEESCCTTHHHH-HHHTTCEEEEEECEEE--------TTEEE---CCHHHHHHHCCT---TEEEEEE
T ss_pred HHh--cCCCCEEEEeCCCcHhHHHH-HHHcCCEEEEeecccc--------ccCCC---CCHHHHHHhhcc---CceEEEE
Confidence 953 34467899999999996443 3344432221111000 00011 289999998863 6788888
Q ss_pred ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC-ccccc----cCCCCceeehhhhcC-CCcceEEE
Q 011959 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG-GAQEY----FGVTPDLTTLGKIIG-GGLPVGAY 325 (474)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~-~~~~~----~g~~pdi~t~sK~l~-~G~~iG~~ 325 (474)
++++|++|.+.+ .+++++|+++|++||++||+||+|+++ +.|.. ..... .+....+.++||.++ +|+|+||+
T Consensus 167 ~~~~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~ 245 (411)
T 2o0r_A 167 NSPHNPTGAVLS-ATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWA 245 (411)
T ss_dssp ESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEE
T ss_pred eCCCCCCCCCCC-HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEE
Confidence 888888998765 556999999999999999999999988 55432 12211 223334558999998 89999999
Q ss_pred EecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeecee
Q 011959 326 GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGM 403 (474)
Q Consensus 326 ~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~ 403 (474)
++++++++.+. ......+++.++++++++.++|+..++ ++..++++++.+++.+.|++. ++....+..|.+
T Consensus 246 ~~~~~~~~~l~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~g~~ 318 (411)
T 2o0r_A 246 CGPAELIAGVR---AAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTEI----GFAVHDSYGTYF 318 (411)
T ss_dssp ECCHHHHHHHH---HHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH----TCEECCCCBSSE
T ss_pred eeCHHHHHHHH---HHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHc----CCEecCCCeeEE
Confidence 99999988876 233445677888999999999975422 345566666677777777654 333222334667
Q ss_pred EEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC-----------------CcceEEecCCcHHHHHHHHH
Q 011959 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ-----------------FEAGFTSLAHSSDDIQHTIT 465 (474)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~-----------------~~~~~~~~~~t~e~i~~~l~ 465 (474)
+++.+.... . ....++.+.|+ ++||++.++. ...+|+++..++++++++++
T Consensus 319 ~~~~~~~~~--~---------~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~~~ 387 (411)
T 2o0r_A 319 LCADPRPLG--Y---------DDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCKRDDTLDEAIR 387 (411)
T ss_dssp EEEECGGGT--C---------CCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCSCHHHHHHHHH
T ss_pred EEEecCCCC--C---------CCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecCCHHHHHHHHH
Confidence 777774210 0 01246777776 6799997641 24578988889999999999
Q ss_pred HHHHHHhh
Q 011959 466 AAEKVLRQ 473 (474)
Q Consensus 466 ~l~~~~~~ 473 (474)
+|++++++
T Consensus 388 ~l~~~~~~ 395 (411)
T 2o0r_A 388 RLSVLAER 395 (411)
T ss_dssp HHGGGGC-
T ss_pred HHHHHHhc
Confidence 99887653
No 83
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.97 E-value=3.3e-30 Score=255.08 Aligned_cols=321 Identities=12% Similarity=0.057 Sum_probs=221.4
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 176 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar 176 (474)
++++|||.+|. ++++ .+|+|++++.++++... +++.....++.++++++++ ..+++++++||++|++.+++..
T Consensus 31 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~--~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~- 104 (363)
T 3ffh_A 31 LTKITKLSSNE--NPLG-TSKKVAAIQANSSVETE--IYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVL- 104 (363)
T ss_dssp CSCCEECSSCS--CTTC-CCHHHHHHHHTCBSCCC--BC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH-
T ss_pred CCceEEccCCC--CCCC-CCHHHHHHHHHHHHHhh--cCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHH-
Confidence 35789999884 4555 78999999998765432 3355555777788877775 4689999999999999999952
Q ss_pred hhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcccc
Q 011959 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (474)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (474)
..++++|++.+++|+++...+ ...|..+..++...... -|++++++.++. ++++|+++.++
T Consensus 105 -~~~gd~vl~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~--------------~d~~~l~~~i~~---~~~~v~~~~p~ 165 (363)
T 3ffh_A 105 -LDTTTNTVMATPTFVQYRQNA-LIEGAEVREIPLLQDGE--------------HDLEGMLNAIDE---KTTIVWICNPN 165 (363)
T ss_dssp -CSTTCEEEEEESSCHHHHHHH-HHHTCEEEEEECCTTSC--------------CCHHHHHHHCCT---TEEEEEEESSC
T ss_pred -ccCCCEEEEcCCChHHHHHHH-HHcCCEEEEecCCCCCC--------------cCHHHHHHhccc---CCCEEEEeCCC
Confidence 345688999999998854433 33343222211111001 189999998863 68888888888
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccc-cccCCCCc---eeehhhhcC-CCcceEEEEecHH
Q 011959 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-EYFGVTPD---LTTLGKIIG-GGLPVGAYGGRRD 330 (474)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~-~~~g~~pd---i~t~sK~l~-~G~~iG~~~~~~~ 330 (474)
|++|.+.+.++ +.+|+++|++ |++||+||+|++| + +..... ...+..++ +.++||.++ +|+|+||++++++
T Consensus 166 nptG~~~~~~~-l~~l~~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 242 (363)
T 3ffh_A 166 NPTGNYIELAD-IQAFLDRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKE 242 (363)
T ss_dssp TTTCCCCCHHH-HHHHHTTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHH
T ss_pred CCcCCCcCHHH-HHHHHHhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHH
Confidence 88999888333 5555555554 9999999999988 6 543222 22222222 448999999 8999999999999
Q ss_pred HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEe
Q 011959 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (474)
Q Consensus 331 i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (474)
+++.+... ..+++.|+++++++.++|+..+. ++..++++++.+++.+.|++. .+ ....++.|.++++.+.
T Consensus 243 ~~~~l~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~---~g-~~~~~~~~~~~~~~~~ 313 (363)
T 3ffh_A 243 IIRQLNIV-----RPPFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRF---EK-VKLYPANGNFVLIDLG 313 (363)
T ss_dssp HHHHHHHT-----CCSCCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC---TT-CEECCCCSSEEEEECS
T ss_pred HHHHHHHh-----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhhC---CC-ceECCCCCeEEEEECC
Confidence 99988742 13678899999999999973211 233444445555555555441 23 2234667888877763
Q ss_pred cCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
. ...++.+.|.++||++.++. ...+|+++. +++++++++++|++++
T Consensus 314 ~---------------~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~-~~~~i~~~~~~l~~~l 363 (363)
T 3ffh_A 314 I---------------EAGTIFSYLEKNGYITRSGAALGFPTAVRITIG-KEEDNSAVIALLEKLL 363 (363)
T ss_dssp S---------------CHHHHHHHHHHTTEECEETTTTTCTTEEEEECC-CHHHHHHHHHHHHHHC
T ss_pred C---------------CHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC-CHHHHHHHHHHHHHhC
Confidence 2 12578889999999998864 346788866 9999999999998763
No 84
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.97 E-value=1.7e-30 Score=263.75 Aligned_cols=346 Identities=10% Similarity=0.010 Sum_probs=240.2
Q ss_pred eeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc--CCCCC---CCHHHHHHHHHHHhhCC---CCCeE
Q 011959 87 SVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFGA---PCLLENVLAEMVISAVP---SIEMV 158 (474)
Q Consensus 87 ~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~~---~~~~~~~la~~l~~~~~---~~~~v 158 (474)
......++|.+|+++|||.+|. ++++ .+|+|++++.+++.+. ..|+. ..+++.++++++.+.++ ..+++
T Consensus 32 ~~~~~~~~~~~g~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i 108 (437)
T 3g0t_A 32 VALVTNLEKATGTKFCRMEMGV--PGLP-APQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARAC 108 (437)
T ss_dssp HHHHHHHHHHHTCCCEECCCCS--CCSC-CCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGE
T ss_pred HHHHHHHHHhcCCCEEeccCcC--CCCC-CCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccE
Confidence 3444556777899999999986 3444 7899999999999853 23332 24677788888876543 46799
Q ss_pred EEeCCHHHHHHHHHHHhHhhcCCc--EEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHH
Q 011959 159 RFVNSGTEACMGVLRLARAFTGRE--RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 236 (474)
Q Consensus 159 ~~~~sGseA~~~al~~ar~~~~~~--~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l 236 (474)
++++||++|++.+++....+..++ +|++.+++|+++...+. ..|..+..++.. ..+. .-|+++|
T Consensus 109 ~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~-~~g~~~~~v~~~-~~~~------------~~d~~~l 174 (437)
T 3g0t_A 109 VPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCR-ILGQKFESFDLF-EYRG------------EKLREKL 174 (437)
T ss_dssp EEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHHH-HHTCCCEEEEGG-GGCT------------THHHHHH
T ss_pred EEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHHH-HcCCEEEEEeec-CCCC------------ccCHHHH
Confidence 999999999999999532114556 89999999998655443 334322211110 0000 0178999
Q ss_pred HHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc-------ccc---cCC
Q 011959 237 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-------QEY---FGV 305 (474)
Q Consensus 237 e~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-------~~~---~g~ 305 (474)
++.++.. ++++|+++.++|++|.+.+.++ +++|.++|++||++||+||+|++| ..+.... ... .+.
T Consensus 175 ~~~l~~~--~~~~v~l~~p~nptG~~~~~~~-l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (437)
T 3g0t_A 175 ESYLQTG--QFCSIIYSNPNNPTWQCMTDEE-LRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDN 251 (437)
T ss_dssp HHHHTTT--CCCEEEEESSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSC
T ss_pred HHHHhcC--CceEEEEeCCCCCCCCcCCHHH-HHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCc
Confidence 9999432 4666666555788898876555 999999999999999999999887 4432111 111 222
Q ss_pred CCceeehhhhcC-CCcceEEEEecHHHHH-h-----------------hcCCCCcccccCCCCChHHHHHHHHHHHHhcC
Q 011959 306 TPDLTTLGKIIG-GGLPVGAYGGRRDIME-M-----------------VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366 (474)
Q Consensus 306 ~pdi~t~sK~l~-~G~~iG~~~~~~~i~~-~-----------------~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 366 (474)
...+.++||.++ +|+|+||+++++++++ . +. ......+++.|+++++++.++|+....
T Consensus 252 ~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~ 328 (437)
T 3g0t_A 252 YILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSS---SALYALSSGATHSAQWGMAAMLKACND 328 (437)
T ss_dssp EEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHT---THHHHHHSSSCHHHHHHHHHHHHHHHT
T ss_pred EEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHH---HHHhhhcCCCCHHHHHHHHHHHhCcHh
Confidence 223458999999 8999999999999998 7 65 333445678899999999999987642
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHhhhcCCeeE------Ee-eeceeEEEEEecCCCcCcccccccchHHHHHHHHHH
Q 011959 367 -----PGTYEYLNKITGELTQGIIDAGKKAGHAIC------GG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 434 (474)
Q Consensus 367 -----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~------v~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 434 (474)
+...++++++.+++.+.|+++ ++... .+ ..|.++++.+... ....+.+.|
T Consensus 329 ~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~L 390 (437)
T 3g0t_A 329 GEYNFRDSVIEYGRKARIMKKMFLDN----GFNIVYDKDGNEPLADGFYFTVGYKGM--------------DSSKLIEKF 390 (437)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHTT----TEEESSCEETTEECCSSSEEEEEETTC--------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc----CCEEeccccCCCCCceeEEEEEecCCC--------------CHHHHHHHH
Confidence 344555566666666666543 33222 24 5677777777411 125788999
Q ss_pred HHCCeEecccCC------cceEEecCC-cHHHHHHHHHHHHHHHhh
Q 011959 435 LEEGVYFAPSQF------EAGFTSLAH-SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 435 ~~~Gv~v~~~~~------~~~~~~~~~-t~e~i~~~l~~l~~~~~~ 473 (474)
.++||++.++.. ..+|+++.. +++++++++++|++++++
T Consensus 391 ~~~gi~v~~~~~~~~~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 391 VRYGMCAITLKTTGSKRNEAMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp HHTTEECEESTTTTCCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred HHcCeEEeeccccCCCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 999999988742 457887655 999999999999998764
No 85
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.97 E-value=1.3e-30 Score=259.06 Aligned_cols=308 Identities=14% Similarity=0.103 Sum_probs=215.9
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHH
Q 011959 122 AALGETMKKGTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 199 (474)
Q Consensus 122 ~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~ 199 (474)
+++.+++..+....++.....+|.+.+++++. +.+++++++||++|++.+++.. ..++++|++.+++|++.... .
T Consensus 46 ~~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l--~~~gd~Vl~~~~~~~~~~~~-~ 122 (375)
T 3op7_A 46 EDFYKKLQGTKLNYGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSL--IEPGDHVISLYPTYQQLYDI-P 122 (375)
T ss_dssp HHHHHHHHTSCCSSCCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHH--CCTTCEEEEEESSCTHHHHH-H
T ss_pred HHHHHHHhcCCcCCCCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHh--cCCCCEEEEeCCCchhHHHH-H
Confidence 45555555543222233334677777877762 5689999999999999999952 34567899999999885543 3
Q ss_pred HhcCCCCccCCCCCCCCCCCCCCCceEEccCC-------CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHH
Q 011959 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFN-------DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272 (474)
Q Consensus 200 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-------d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l 272 (474)
...|..+ +.++.+ |+++|++.++. ++++|++++++|++|.+.+ .+++++|
T Consensus 123 ~~~g~~~-------------------~~v~~~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~nptG~~~~-~~~l~~i 179 (375)
T 3op7_A 123 KSLGAEV-------------------DLWQIEEENGWLPDLEKLRQLIRP---TTKMICINNANNPTGAVMD-RTYLEEL 179 (375)
T ss_dssp HHTTCEE-------------------EEEEEEGGGTTEECHHHHHHHCCT---TCCEEEEESSCTTTCCCCC-HHHHHHH
T ss_pred HHcCCEE-------------------EEEeccccCCCCCCHHHHHHhhcc---CCeEEEEcCCCCCCCCCCC-HHHHHHH
Confidence 3333322 222211 89999998863 6788889988888998775 4559999
Q ss_pred HHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcC-CCcceEEEEecHHHHHhhcCCCCcccccCCCCC
Q 011959 273 RRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 350 (474)
Q Consensus 273 ~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~-~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~ 350 (474)
.++|++||++||+||+|+++ +.+.....+.++..+++.+|||+++ +|+|+||+++++++++.+.. .....+++.+
T Consensus 180 ~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~---~~~~~~~~~~ 256 (375)
T 3op7_A 180 VEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVTDILRD---YRDYTMICAG 256 (375)
T ss_dssp HHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHHHHHTT---TGGGTTSCCC
T ss_pred HHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHHHHHHH---HHhhhccCCC
Confidence 99999999999999999988 5433333455666677789999999 79999999999999999873 4455678889
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeee-ceeEEEEEecCCCcCcccccccchHHHHH
Q 011959 351 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI-SGMFGFFFTEGPVYNFEDAKKSETTKFAR 429 (474)
Q Consensus 351 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 429 (474)
++.++++.++|+..+ +..++.++..+..++.|.+.+.+++....+.+. |.+.++.+.... ...+
T Consensus 257 ~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 321 (375)
T 3op7_A 257 VFDDLVAQLALAHYQ--EILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM-------------PMED 321 (375)
T ss_dssp HHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS-------------CHHH
T ss_pred cHHHHHHHHHHhccH--HHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC-------------CHHH
Confidence 999999998887542 233444333333344444433334433333343 445555553210 1245
Q ss_pred HHHHH-HHCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 430 FYRGM-LEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 430 ~~~~l-~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+.+.+ .++||++.++. ...+|+++..+++++++++++|++++++
T Consensus 322 ~~~~ll~~~gi~v~~g~~~~~~~~iRi~~~~~~~~i~~~l~~l~~~l~~ 370 (375)
T 3op7_A 322 FCLQLLQEHGVLLVPGNRFERDGYVRLGFACEQETLIKGLEKLSQFLRR 370 (375)
T ss_dssp HHHHHHHHHCEECEEGGGGTCTTEEEECCCSCHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhCCEEEeChhhhCCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 66776 47899998864 3568899988899999999999999875
No 86
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.97 E-value=1.9e-30 Score=256.64 Aligned_cols=321 Identities=15% Similarity=0.087 Sum_probs=221.8
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc--CCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVL 172 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al 172 (474)
.+|+.+|||.++. ++++ .+|+|++++.++++++ ..++++.....+|.++++++++ ..+++++++||++|++.++
T Consensus 23 ~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~ 99 (360)
T 3hdo_A 23 PDIASWIKLNTNE--NPYP-PSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLI 99 (360)
T ss_dssp SCCTTSEECSSCC--CSSC-CCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred ccccceeeccCCC--CCCC-CCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHH
Confidence 4678999999884 3343 7899999999998773 1123333333567777777665 4689999999999999999
Q ss_pred HHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEE
Q 011959 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (474)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (474)
+.. ...+++|++.+++|++....+ ...|..+. .++.++-..++++++.. +++++++
T Consensus 100 ~~l--~~~gd~Vl~~~p~~~~~~~~~-~~~g~~~~-------------------~v~~~~~~~~~~l~~~~--~~~~v~i 155 (360)
T 3hdo_A 100 RAF--AAEGEEIGYVHPSYSYYGTLA-EVQGARVR-------------------TFGLTGDFRIAGFPERY--EGKVFFL 155 (360)
T ss_dssp HHH--CCTTCEEEEESSSCTHHHHHH-HHHTCEEE-------------------EECBCTTSSBTTCCSSB--CSSEEEE
T ss_pred HHH--hCCCCEEEEcCCChHHHHHHH-HHCCCEEE-------------------EeeCCCCCCHHHHHhhc--CCCEEEE
Confidence 942 334578999999998865433 33343222 22221100112222222 2346777
Q ss_pred ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcC-CCcceEEEEecHH
Q 011959 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRD 330 (474)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~-~G~~iG~~~~~~~ 330 (474)
+.++|++|.+.+ +++|.++|+++|++||+||+|++| ..+.....+..+....+.++||.++ +|+|+||++++++
T Consensus 156 ~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 231 (360)
T 3hdo_A 156 TTPNAPLGPSFP----LEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPE 231 (360)
T ss_dssp ESSCTTTCCCCC----HHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHH
T ss_pred eCCCCCCCCCcC----HHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHH
Confidence 777888999999 888999999999999999999987 3322222223333344558999998 7999999999999
Q ss_pred HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEe
Q 011959 331 IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409 (474)
Q Consensus 331 i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~ 409 (474)
+++.+.. ...+++.|+++++++.++|+..+. ++..++++++.+++.+.|++. ++. ..++.|.++++.+.
T Consensus 232 ~~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~-~~~~~~~~~~~~~~ 301 (360)
T 3hdo_A 232 VIAALDK-----IRDHYNLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI----GYD-VIPSQGNYLFATPP 301 (360)
T ss_dssp HHHHHHH-----HSCSCCSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT----TCE-ECCCSSSEEEEECT
T ss_pred HHHHHHH-----hCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC----CCE-EcCCCccEEEEECC
Confidence 9988863 123578899999999999984221 344555555666666666543 332 34667888777653
Q ss_pred cCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC----cceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----EAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
.. ...++.+.|.++||++.++.. ..+|+++. +++++++++++|+++.+
T Consensus 302 ~~--------------~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~-~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 302 DR--------------DGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG-TREEMEQTLAALKEIGE 353 (360)
T ss_dssp TC--------------CHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC-CHHHHHHHHHHHHHHHC
T ss_pred CC--------------CHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC-CHHHHHHHHHHHHHHhc
Confidence 21 125778889999999988642 56788876 99999999999998764
No 87
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.97 E-value=3.8e-30 Score=259.01 Aligned_cols=330 Identities=15% Similarity=0.087 Sum_probs=228.8
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEAC 168 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~ 168 (474)
.+|+++|||.++. ..++ .+|.+.+++ ++++++. .|+. ..+++.++++++.+.++ +.+++++++||++|+
T Consensus 40 ~~g~~~i~l~~~~--~~~~-~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~ 115 (409)
T 2gb3_A 40 KRGVRIHHLNIGQ--PDLK-TPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAI 115 (409)
T ss_dssp HTTCEEEECSSCC--CCSC-CCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHH
T ss_pred hcCCCEEeccCCC--CCCC-CCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHH
Confidence 3588999998885 2445 578999999 8886532 2322 35678888888877553 457999999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCC-HHHHHHHHhcCCCCe
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND-VSALENLFENNKGEI 247 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d-~~~le~~l~~~~~~~ 247 (474)
+.+++.. ..++++|++.+++||++... +...|..+..++.....++ + +++|++.+++ ++
T Consensus 116 ~~~~~~~--~~~gd~Vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~--------------~~~~~l~~~l~~---~~ 175 (409)
T 2gb3_A 116 LFSFAVI--ANPGDEILVLEPFYANYNAF-AKIAGVKLIPVTRRMEEGF--------------AIPQNLESFINE---RT 175 (409)
T ss_dssp HHHHHHH--CCTTCEEEEEESCCTHHHHH-HHHHTCEEEEEECCGGGTS--------------CCCTTGGGGCCT---TE
T ss_pred HHHHHHh--CCCCCEEEEcCCCchhHHHH-HHHcCCEEEEeccCCCCCC--------------ccHHHHHHhhCc---CC
Confidence 9999953 34567899999999986543 3334432221111000010 1 4566666652 67
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCC-CCcee--ehhhhcC-CCcce
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIG-GGLPV 322 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pdi~--t~sK~l~-~G~~i 322 (474)
++|++++++|++|.+.+ .+++++|+++|++||++||+||+|+++ +.+..... ..++ ..|++ ++||.++ +|+|+
T Consensus 176 ~~v~~~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G~r~ 253 (409)
T 2gb3_A 176 KGIVLSNPCNPTGVVYG-KDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSACGARV 253 (409)
T ss_dssp EEEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTCGGGCC
T ss_pred eEEEECCCCCCCCCCcC-HHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc-cccCCCCEEEEecchhccCCccceE
Confidence 88888888888898765 456999999999999999999999988 55533222 1223 23554 7999998 79999
Q ss_pred EEEEecH-HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCee-EEe
Q 011959 323 GAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAI-CGG 398 (474)
Q Consensus 323 G~~~~~~-~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~ 398 (474)
||+++++ ++++.+.. .....+ +.|+++++++.++|+...+ +.+.++++++.+++.+.|++. ++.. ..+
T Consensus 254 G~~~~~~~~l~~~l~~---~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~ 325 (409)
T 2gb3_A 254 GCLITRNEELISHAMK---LAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEEH----GLKRFTKP 325 (409)
T ss_dssp EEEECSCHHHHHHHHH---HHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCBCCC
T ss_pred EEEEECcHHHHHHHHH---HHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHc----CceeeeCC
Confidence 9999998 89888762 223344 7899999999888854211 344556666677777777654 3222 223
Q ss_pred eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC------CeEecccC---------CcceEEecCCcHHHHHHH
Q 011959 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE------GVYFAPSQ---------FEAGFTSLAHSSDDIQHT 463 (474)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------Gv~v~~~~---------~~~~~~~~~~t~e~i~~~ 463 (474)
..|.++++.+... ...++.+.|+++ ||++.++. ...+|+++.+++++++++
T Consensus 326 ~~~~~~~~~~~~~--------------~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~~~~e~i~~~ 391 (409)
T 2gb3_A 326 SGAFYITAELPVE--------------DAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACVLEKDLLSRA 391 (409)
T ss_dssp SBSSEEEEECSSS--------------CHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECCSCHHHHHHH
T ss_pred CeeEEEEEEeCCC--------------CHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeCCCHHHHHHH
Confidence 3466666665310 125688888887 99998752 346788888999999999
Q ss_pred HHHHHHHHhh
Q 011959 464 ITAAEKVLRQ 473 (474)
Q Consensus 464 l~~l~~~~~~ 473 (474)
+++|++++++
T Consensus 392 ~~~l~~~l~~ 401 (409)
T 2gb3_A 392 IDVLMEGLKM 401 (409)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 88
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.97 E-value=3e-29 Score=248.95 Aligned_cols=319 Identities=15% Similarity=0.129 Sum_probs=227.2
Q ss_pred EeccCChhhccCCCCCHHHHHHHHHHHHhc----CCCCCC--CHHHHHHHHHHHhh--CC-CCCeEEEeCCHHHHHHHHH
Q 011959 102 IDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGAP--CLLENVLAEMVISA--VP-SIEMVRFVNSGTEACMGVL 172 (474)
Q Consensus 102 iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~~--~~~~~~la~~l~~~--~~-~~~~v~~~~sGseA~~~al 172 (474)
|||.+|. ++++ .+|++.+++.+++++. ..|+.. .+++.++++++.+. ++ ..++|++++|++++++.++
T Consensus 33 idl~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~ 109 (369)
T 3cq5_A 33 IRLNTNE--NPYP-PSEALVADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLL 109 (369)
T ss_dssp EECSSCC--CCSC-CCHHHHHHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHH
T ss_pred eeccCCC--CCCC-CCHHHHHHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHH
Confidence 8998885 3566 7899999999998762 223211 24455555555443 33 4678999999999999999
Q ss_pred HHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEE
Q 011959 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (474)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (474)
+.. ..++++|++.+++||++...+ ...|..+..++.. ... ..|+++|++.++++ ++++|++
T Consensus 110 ~~l--~~~gd~Vl~~~~~y~~~~~~~-~~~g~~~~~v~~~--~~~------------~~d~~~l~~~i~~~--~~~~v~~ 170 (369)
T 3cq5_A 110 QAF--GGPGRTALGFQPSYSMHPILA-KGTHTEFIAVSRG--ADF------------RIDMDVALEEIRAK--QPDIVFV 170 (369)
T ss_dssp HHH--CSTTCEEEEEESSCTHHHHHH-HHTTCEEEEEECC--TTS------------SCCHHHHHHHHHHH--CCSEEEE
T ss_pred HHh--cCCCCEEEEcCCChHHHHHHH-HHcCCEEEEecCC--cCC------------CCCHHHHHHHhhcc--CCCEEEE
Confidence 853 234678999999999865533 3334332221111 100 11799999998742 4678888
Q ss_pred ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc-ccccC-CCCceeehhhhcC-CCcceEEEEec
Q 011959 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFG-VTPDLTTLGKIIG-GGLPVGAYGGR 328 (474)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~~g-~~pdi~t~sK~l~-~G~~iG~~~~~ 328 (474)
++++|++|.+.+ ++++.++|+.++++||+||+|++| +...... .+.++ ..+++.++||+++ +|+|+||++++
T Consensus 171 ~~~~nptG~~~~----~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 246 (369)
T 3cq5_A 171 TTPNNPTGDVTS----LDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVAN 246 (369)
T ss_dssp ESSCTTTCCCCC----HHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEEC
T ss_pred eCCCCCCCCCCC----HHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeC
Confidence 888889999998 778888999999999999999988 4322121 12233 3345668999998 79999999999
Q ss_pred HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEE
Q 011959 329 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407 (474)
Q Consensus 329 ~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~ 407 (474)
+++++.+... ..+++.|+++++++.++|+..+. ++..++++++.+++.+.|++. ++. ..++.|.++++.
T Consensus 247 ~~~~~~l~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~-~~~~~~~~~~~~ 316 (369)
T 3cq5_A 247 PAFIDAVMLV-----RLPYHLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL----GYA-VVPSESNFVFFG 316 (369)
T ss_dssp THHHHHHHTT-----SCTTCSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH----TCE-EECCSSSEEEEE
T ss_pred HHHHHHHHHc-----CCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC----CCE-ECCCCCeEEEEE
Confidence 9999888742 22567899999999999975322 456677777777777777763 332 235677888776
Q ss_pred EecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-CcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
+.. + ..++.+.|.++||++.+++ ...+|+++. +++++++++++|+++++
T Consensus 317 ~~~------------~---~~~l~~~l~~~gi~v~~~~~~~~iRis~~-~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 317 DFS------------D---QHAAWQAFLDRGVLIRDVGIAGHLRTTIG-VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp CCS------------S---HHHHHHHHHHTTEECBCCSCTTEEEEECC-CHHHHHHHHHHHHHHHT
T ss_pred CCC------------C---HHHHHHHHHHCCEEEEECCCCCeEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 631 0 2567888899999999874 346788876 89999999999999875
No 89
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.97 E-value=1.1e-29 Score=250.21 Aligned_cols=324 Identities=15% Similarity=0.098 Sum_probs=215.8
Q ss_pred EeeccCEEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCH
Q 011959 86 DSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSG 164 (474)
Q Consensus 86 ~~~~G~~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sG 164 (474)
.+++|.+++|.+|+++|||.++. ++++ .+|++++++.+++.....| +.....+|.++++++++ ..+++++++||
T Consensus 2 ~~~~g~~~~~~~g~~~id~~~~~--~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~lr~~la~~~~~~~~~i~~t~g~ 76 (350)
T 3fkd_A 2 IFGHGDEGITPLSSEIVNFSTTV--WTDG-DKDHLEKHLVENLNCIRHY--PEPDAGTLRQMLAKRNSVDNNAILVTNGP 76 (350)
T ss_dssp --------------CCEECSCCS--CCCS-CCHHHHHHHHHTGGGGGSC--CCTTCHHHHHHHHHHTTCCGGGEEEESHH
T ss_pred cccccchHhhhccccEEEccCCC--CCCC-CCHHHHHHHHHhHhHHhcC--CCCcHHHHHHHHHHHhCcCHHHEEEcCCH
Confidence 46889999999999999999885 5555 7899999999988543333 32223678888888886 46799999999
Q ss_pred HHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC-CCHHHHHHHHhcC
Q 011959 165 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENN 243 (474)
Q Consensus 165 seA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~d~~~le~~l~~~ 243 (474)
++|++.+++. +. +++|++.+++|++.... +...|. +++.++. ++.+.+.
T Consensus 77 ~~al~~~~~~---l~-gd~Vi~~~p~~~~~~~~-~~~~g~-------------------~~~~v~~~~~~~~~~------ 126 (350)
T 3fkd_A 77 TAAFYQIAQA---FR-GSRSLIAIPSFAEYEDA-CRMYEH-------------------EVCFYPSNEDIGEAD------ 126 (350)
T ss_dssp HHHHHHHHHH---TT-TCEEEEEESCCHHHHHH-HHHTTC-------------------EEEEEETTSCGGGSC------
T ss_pred HHHHHHHHHH---HC-CCEEEEeCCCcHHHHHH-HHHcCC-------------------eEEEEecCCccccCc------
Confidence 9999999995 33 78999999999885533 333333 2333333 2211111
Q ss_pred CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhC-CEEEEeccccCc-ccCCCccccccCCC---CceeehhhhcC-
Q 011959 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG-ALLIFDEVMTGF-RLAYGGAQEYFGVT---PDLTTLGKIIG- 317 (474)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g-~llI~DEv~~g~-r~g~~~~~~~~g~~---pdi~t~sK~l~- 317 (474)
.+++++|+++.++|++|.+.+ ++++.++++.++ .+||+||+|.+| ..+.... ...+.. ..+.+|||.++
T Consensus 127 ~~~~~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~-~~~~~~~~~i~~~S~sK~~~~ 201 (350)
T 3fkd_A 127 FSNMDFCWLCNPNNPDGRLLQ----RTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRP-ADIKGRKNLVMVYSFSHAYGI 201 (350)
T ss_dssp CTTCSEEEEESSCTTTCCCCC----HHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCG-GGGTTCSSEEEEEESHHHHSC
T ss_pred cCCCCEEEEeCCCCCcCCCCC----HHHHHHHHHhCCCCEEEEECchhhhccCcchhh-HHhhcCCCEEEEecCchhccC
Confidence 035677777777888999998 444555555544 599999999888 5543222 222222 33448999999
Q ss_pred CCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeE
Q 011959 318 GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (474)
Q Consensus 318 ~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (474)
+|+|+||+++++++++.+... ..+++.|+++++++.++|+...+ .+..++..++.+++.+.|+++ +....
T Consensus 202 ~G~r~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~ 272 (350)
T 3fkd_A 202 PGLRIGYIVANKDFMKRVAAF-----STPWAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRL----DGVEV 272 (350)
T ss_dssp GGGCCEEEECCHHHHHHHHTT-----CCTTCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHS----TTEEE
T ss_pred cchheEeEEeCHHHHHHHHHh-----CCCCCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC----CCcEE
Confidence 899999999999999988742 23567899999999999986542 222333336677777777653 32333
Q ss_pred EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC------CcceEEecCCcHHHHHHHHHHHHH
Q 011959 397 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTITAAEK 469 (474)
Q Consensus 397 v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~~l~~ 469 (474)
.++.|.++++.+... ...++.+.|.+ +||.+.++. ...+|+++. +++++++++++|++
T Consensus 273 ~~~~~~~~~~~~~~~--------------~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~-~~~~~~~l~~al~~ 337 (350)
T 3fkd_A 273 HPSGTTFFLLRLKKG--------------TAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ-RPAQNQLFIKALET 337 (350)
T ss_dssp CCCSSSEEEEEESSS--------------CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC-CHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCC--------------CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC-CHHHHHHHHHHHHH
Confidence 456778877776431 12578888998 999998763 345788765 88899999999998
Q ss_pred HHhh
Q 011959 470 VLRQ 473 (474)
Q Consensus 470 ~~~~ 473 (474)
+.++
T Consensus 338 ~~~~ 341 (350)
T 3fkd_A 338 FLEK 341 (350)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 8754
No 90
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.97 E-value=7.6e-30 Score=256.53 Aligned_cols=339 Identities=14% Similarity=0.061 Sum_probs=232.3
Q ss_pred cCCCEEEeccCChhhc-cCCCCCHHHHHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHH
Q 011959 96 IDGNEYIDYVGSWGPA-IIGHADDQVLAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP---SIEMVRFVNSGTEA 167 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~-~lG~~~p~v~~a~~~~~~~~~-~~~~---~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA 167 (474)
.+|+++|||..+.... .++ .+|++.+++.+++.+.. .|+. ..+++.++++++.+.++ +.+++++++||++|
T Consensus 35 ~~g~~~i~l~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a 113 (406)
T 1xi9_A 35 KKGIKVIRLNIGDPVKFDFQ-PPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEA 113 (406)
T ss_dssp HTTCCCEECCCCCGGGTTCC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred HcCCCEEEecCCCCCcCCCC-CCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHH
Confidence 4688999999885422 455 57999999999987643 3332 24677888888876542 46799999999999
Q ss_pred HHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC-CCHHHHHHHHhcCCCC
Q 011959 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNKGE 246 (474)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~ 246 (474)
++.+++.+ ..++++|++.+++||++...+ ...|..+..++..... .+ -|+++|++.+++ +
T Consensus 114 l~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~-------------~~~~d~~~l~~~l~~---~ 174 (406)
T 1xi9_A 114 LQLIFGAL--LDPGDEILVPGPSYPPYTGLV-KFYGGKPVEYRTIEEE-------------DWQPDIDDIRKKITD---R 174 (406)
T ss_dssp HHHHHHHH--CCTTCEEEEEESCCHHHHHHH-HHTTCEEEEEEEEGGG-------------TSEECHHHHHHHCCT---T
T ss_pred HHHHHHHh--CCCCCEEEEcCCCCccHHHHH-HHcCCEEEEeecCCCc-------------CCcCCHHHHHHhhCc---C
Confidence 99999953 345678999999999855433 3333322111100000 01 179999998863 5
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCC-cee--ehhhhcC-CCcc
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP-DLT--TLGKIIG-GGLP 321 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~p-di~--t~sK~l~-~G~~ 321 (474)
+++|++++++|++|.+.+ ++++++|.++|++||++||+||+|++| +.+.......++... +++ ++||.++ +|+|
T Consensus 175 ~~~v~i~~p~nptG~~~~-~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r 253 (406)
T 1xi9_A 175 TKAIAVINPNNPTGALYD-KKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWR 253 (406)
T ss_dssp EEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGC
T ss_pred ceEEEEECCCCCCCCCcC-HHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccE
Confidence 788888888888998765 455999999999999999999999988 533333333333111 333 7899998 7999
Q ss_pred eEEEE--ecH----HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011959 322 VGAYG--GRR----DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGH 393 (474)
Q Consensus 322 iG~~~--~~~----~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (474)
+||++ +++ ++++.+.. ..... ++.|+++++++.++|+...+ +++.++++++++++.+.|++ .+.
T Consensus 254 ~G~~~~~~~~~~~~~l~~~l~~---~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~ 325 (406)
T 1xi9_A 254 LGYMYFVDPENKLSEVREAIDR---LARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNE----IPG 325 (406)
T ss_dssp CEEEEEECTTCTTHHHHHHHHH---HHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHT----STT
T ss_pred EEEEEEecCchhHHHHHHHHHH---HHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh----CCC
Confidence 99998 999 99888762 22222 67889999999999864322 33455556666666666654 321
Q ss_pred eeEEeee-ceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC------CcceEEecCCcHHHHHHHHH
Q 011959 394 AICGGYI-SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ------FEAGFTSLAHSSDDIQHTIT 465 (474)
Q Consensus 394 ~~~v~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l~ 465 (474)
...+++. |.++++.+.... .....++.+.|+ ++||++.++. ...+|+++.+++++++++++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~~~~~~i~~~~~ 394 (406)
T 1xi9_A 326 ISTTKPQGAFYIFPKIEVGP-----------WKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFLPPIEILEEAMD 394 (406)
T ss_dssp EECCCCCBSSEECCEECSCS-----------CSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECCSCHHHHHHHHH
T ss_pred CeeecCCeeEEEEEecCccC-----------CCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEecCCHHHHHHHHH
Confidence 1112333 445555553200 001256788887 8899998763 34688988899999999999
Q ss_pred HHHHHHhhC
Q 011959 466 AAEKVLRQI 474 (474)
Q Consensus 466 ~l~~~~~~~ 474 (474)
+|+++++++
T Consensus 395 ~l~~~l~~~ 403 (406)
T 1xi9_A 395 RFEKFMKER 403 (406)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998753
No 91
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.97 E-value=6.3e-30 Score=259.52 Aligned_cols=340 Identities=11% Similarity=0.060 Sum_probs=227.0
Q ss_pred EEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-------------CCCC---CCCHHHHHHHHHHHhhCC----
Q 011959 94 WDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-------------TSFG---APCLLENVLAEMVISAVP---- 153 (474)
Q Consensus 94 ~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-------------~~~~---~~~~~~~~la~~l~~~~~---- 153 (474)
||.++|.+.++..|...++++ ++.+.+++.++.... ..|+ +..+++.++++++.+..+
T Consensus 31 y~~~~~p~~~i~lg~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~ 108 (435)
T 3piu_A 31 YHEVHNTNGIIQMGLAENQLC--FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVT 108 (435)
T ss_dssp CBTTTBTTSBEECSSCCCCSS--HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSC
T ss_pred CCcccCCCCeEEecccccccc--HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCC
Confidence 778888766666665556555 788888888765421 1122 234677788887765432
Q ss_pred -CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-
Q 011959 154 -SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN- 231 (474)
Q Consensus 154 -~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 231 (474)
..+++++++||++|++.+++.. ...++.|++.+++|++....+....|.. ++.++++
T Consensus 109 ~~~~~v~~~~gg~~a~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~~g~~-------------------~~~~~~~~ 167 (435)
T 3piu_A 109 FDPNHLVLTAGATSANETFIFCL--ADPGEAVLIPTPYYPGFDRDLKWRTGVE-------------------IVPIHCTS 167 (435)
T ss_dssp CCGGGEEEEEHHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHTTTTTCCE-------------------EEEEECCG
T ss_pred CCHHHEEEcCChHHHHHHHHHHh--cCCCCeEEECCCccccHHHHHHHhcCCE-------------------EEEeeCCC
Confidence 3689999999999999999953 2345788888888877543322123332 2333321
Q ss_pred ------CHHHHHHHHhc---CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc-c
Q 011959 232 ------DVSALENLFEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-Q 300 (474)
Q Consensus 232 ------d~~~le~~l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~ 300 (474)
|+++|++.+++ ...++++|++++++|++|.+.+.++ +++|+++|++||++||+||+|+++ +.+..+. .
T Consensus 168 ~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~-l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~ 246 (435)
T 3piu_A 168 SNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNE-LYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISV 246 (435)
T ss_dssp GGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCH
T ss_pred ccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHH-HHHHHHHHHHcCCEEEEeccccccccCCCCCcCH
Confidence 89999998875 2236788888888888998776555 999999999999999999999987 5554322 1
Q ss_pred cccC----CC-----Cc----eeehhhhcC-CCcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc
Q 011959 301 EYFG----VT-----PD----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK 365 (474)
Q Consensus 301 ~~~g----~~-----pd----i~t~sK~l~-~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~ 365 (474)
..++ +. +| +.||||++| +|+|+||+++ ++++++.+.. ...++..++++++++.++|+...
T Consensus 247 ~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~ 321 (435)
T 3piu_A 247 MEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATK-----MSSFGLVSSQTQHLLSAMLSDKK 321 (435)
T ss_dssp HHHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHH-----HGGGSCCCHHHHHHHHHHHHCHH
T ss_pred HHhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHH-----HhhcCCCCHHHHHHHHHHhcChH
Confidence 1111 11 34 458999999 8999999988 5677777652 22345678888888888876322
Q ss_pred C-----CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-Ce
Q 011959 366 E-----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GV 439 (474)
Q Consensus 366 ~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv 439 (474)
. ++..++++++.+++++.|++ .++....+..|+++++.+..... .+......++.+.|+++ ||
T Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~L~~----~g~~~~~~~~g~~~~~~l~~~~~-------~~~~~~~~~~~~~l~~~~gi 390 (435)
T 3piu_A 322 LTKNYIAENHKRLKQRQKKLVSGLQK----SGISCLNGNAGLFCWVDMRHLLR-------SNTFEAEMELWKKIVYEVHL 390 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----TTCEECCCCSSSEEEEECGGGSS-------SSSHHHHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCCcccCCCeeEEEEEEcccccc-------cCCchhHHHHHHHHHHHCCE
Confidence 1 22334444455555555543 34332223345788888753210 01122345778888877 99
Q ss_pred EecccC------CcceEEecCC-cHHHHHHHHHHHHHHHhh
Q 011959 440 YFAPSQ------FEAGFTSLAH-SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 440 ~v~~~~------~~~~~~~~~~-t~e~i~~~l~~l~~~~~~ 473 (474)
++.++. ...+|+++.. |+++|++++++|++++++
T Consensus 391 ~v~~g~~~~~~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~~ 431 (435)
T 3piu_A 391 NISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLKAFVGE 431 (435)
T ss_dssp ECEEGGGGTCSSTTEEEEECSSSCHHHHHHHHHHHHHHHHH
T ss_pred EEeCCcccCCCCCCEEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence 998753 3457888766 999999999999999865
No 92
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.97 E-value=1.9e-30 Score=264.39 Aligned_cols=339 Identities=11% Similarity=0.076 Sum_probs=224.6
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc----CCCCC-C----CHHHHHHHHHHHhhCC-CCCeEEEeCCHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----TSFGA-P----CLLENVLAEMVISAVP-SIEMVRFVNSGT 165 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~~~~~-~----~~~~~~la~~l~~~~~-~~~~v~~~~sGs 165 (474)
.+|+++|||.+|. ..+. .+|.|++++.+++++. ..++| + .++++++++++..-.+ ..+++++++|++
T Consensus 66 ~~~~~~i~l~~g~--~~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~ 142 (449)
T 3qgu_A 66 NPDAKIISLGIGD--TTEP-LPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSK 142 (449)
T ss_dssp CTTCCCEECSSCC--CCCC-CCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred CCCCCEEEeeCCC--CCCC-CCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHH
Confidence 4688999999883 2233 6899999999999841 11222 2 2445555555430002 467999999999
Q ss_pred HHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCC
Q 011959 166 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (474)
Q Consensus 166 eA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (474)
+++..+.. ...+++.|++.+++|+++...+......+... . ....++..+|+++.+.+...+.+. +
T Consensus 143 ~al~~~~~---l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~-~ 208 (449)
T 3qgu_A 143 CDIARIQM---MFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHN------G----TGFDGIEYMVCNPDNHFFPDLSKA-K 208 (449)
T ss_dssp HHHHHHHH---HHCSSSCEEEEESCCTHHHHHHHHHTCSCCBC------S----SSBTTEEEEECCGGGTTCCCGGGC-C
T ss_pred HHHHHHHH---HhCCCCEEEEcCCCChhHHHHHHHcCCccccc------c----cccceeEEEecccccCCcCChhHc-C
Confidence 99998833 34567889999999999765554443321110 0 001124445544221221112221 3
Q ss_pred CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC-Ccccccc----CCCCceeehhhhcC-C
Q 011959 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYF----GVTPDLTTLGKIIG-G 318 (474)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~----g~~pdi~t~sK~l~-~ 318 (474)
++++|+++.++|++|.+.+.+ .+++|+++|++||++||+||+|++| +.+. ......+ +....+.+|||++| +
T Consensus 209 ~~~~v~l~~p~NPtG~~~~~~-~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 287 (449)
T 3qgu_A 209 RTDIIFFCSPNNPTGAAATRA-QLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFT 287 (449)
T ss_dssp CCSEEEEESSCTTTCCCCCHH-HHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCT
T ss_pred CCCEEEEeCCCCCCCCcCCHH-HHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCc
Confidence 567777777788888877644 5999999999999999999999988 5542 2222222 22334568999999 8
Q ss_pred CcceEEEEecHHHHHh--------hcCCCCcccccCCCCChHHHHHHHHHHHHhc--C-CCHHHHHHHHHHHHHHHHHHH
Q 011959 319 GLPVGAYGGRRDIMEM--------VAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK--E-PGTYEYLNKITGELTQGIIDA 387 (474)
Q Consensus 319 G~~iG~~~~~~~i~~~--------~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~--~-~~~~~~~~~~~~~l~~~L~~~ 387 (474)
|+|+||+++++++++. +. ......+++.++++++++.++|+... . +++.++++++.+++++.|+++
T Consensus 288 G~r~G~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 364 (449)
T 3qgu_A 288 GVRLGWTVVPKALKYANGEPVHADWN---RVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM 364 (449)
T ss_dssp TCCCEEEECCTTCBCTTSCBHHHHHH---HHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cceeEEEecCHHHHhhhhhhHHHHHH---HHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999887652 22 12234455789999999998886421 1 456667777777777777664
Q ss_pred hhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC------CcceEEecCCcHHHH
Q 011959 388 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEAGFTSLAHSSDDI 460 (474)
Q Consensus 388 ~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~------~~~~~~~~~~t~e~i 460 (474)
++....+..|.++++.+. . . ...++.+.|+++ ||++.|+. ...+|+++..++++|
T Consensus 365 ----g~~~~~~~~~~~~~~~~~-~-~------------~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~~~e~i 426 (449)
T 3qgu_A 365 ----GFSVYGGDDAPYIWVGFP-G-K------------PSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFGSRENI 426 (449)
T ss_dssp ----TCCEEESSSSSEEEEECT-T-S------------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHH
T ss_pred ----CCeeeCCCCeeEEEEECC-C-C------------CHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecCCHHHH
Confidence 433333345777777763 1 0 125677788875 99998763 356789988899999
Q ss_pred HHHHHHHHHHHhh
Q 011959 461 QHTITAAEKVLRQ 473 (474)
Q Consensus 461 ~~~l~~l~~~~~~ 473 (474)
++++++|++++++
T Consensus 427 ~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 427 LEAVRRFKEAYGK 439 (449)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 93
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.97 E-value=1.5e-30 Score=262.15 Aligned_cols=343 Identities=13% Similarity=0.026 Sum_probs=222.7
Q ss_pred CCCEEEeccCChhhccCCC--CCHHHHHHHHHHHHh--cC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEE--eCC
Q 011959 97 DGNEYIDYVGSWGPAIIGH--ADDQVLAALGETMKK--GT-SFG---APCLLENVLAEMVISAVP---SIEMVRF--VNS 163 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~--~~-~~~---~~~~~~~~la~~l~~~~~---~~~~v~~--~~s 163 (474)
+|+.+|||..|...++.|+ .+|.+.+++.+++.+ .. .|+ +..++++++++++...++ ..++|++ ++|
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~g 107 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLG 107 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCC
Confidence 3677899998854445554 458999999998732 11 222 123455566666543322 3579999 999
Q ss_pred HHHHHHHHHHHhHhhcCC-----cEEEEEeCCCCCCchhHHHhcCCC-CccCCCCCCCCCCCCCCCceEEccCCCHHHHH
Q 011959 164 GTEACMGVLRLARAFTGR-----ERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSALE 237 (474)
Q Consensus 164 GseA~~~al~~ar~~~~~-----~~ii~~~~~yhg~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le 237 (474)
|++|++.++++++.+.++ ++|++.+++||++...+. ..|.. +..++.....+ .. .|+++|+
T Consensus 108 g~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~-~~g~~~~~~~~~~~~~~---------~~---~d~~~l~ 174 (412)
T 1ajs_A 108 GTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFT-TAGFKDIRSYRYWDTEK---------RG---LDLQGFL 174 (412)
T ss_dssp HHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHH-HTTCSCEEEEECEETTT---------TE---ECHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHH-HcCCceeEEEeeecCCC---------Cc---cCHHHHH
Confidence 999999998866555566 899999999999654433 33432 22211100000 00 1799999
Q ss_pred HHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC---CCccccccCCCCc----e
Q 011959 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA---YGGAQEYFGVTPD----L 309 (474)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g---~~~~~~~~g~~pd----i 309 (474)
+.+++++.++++++++.++|++|.+.+ .+++++|+++|++||++||+||+|.+| +.+ .......+...+| +
T Consensus 175 ~~l~~~~~~~~~v~~~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (412)
T 1ajs_A 175 SDLENAPEFSIFVLHACAHNPTGTDPT-PEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCA 253 (412)
T ss_dssp HHHHHSCTTCEEEEESSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEE
T ss_pred HHHHhCCCCcEEEEECCCCCCCCCCCC-HHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEE
Confidence 998765445677766777777887654 566999999999999999999999998 654 2323332221233 4
Q ss_pred eehhhhcCC-CcceEEEEe---cHHHHHhhcCCCCcccccCCC-CChHHHHHHHHHHHHhc------C--CCHHHHHHHH
Q 011959 310 TTLGKIIGG-GLPVGAYGG---RRDIMEMVAPAGPMYQAGTLS-GNPLAMTAGIHTLKRLK------E--PGTYEYLNKI 376 (474)
Q Consensus 310 ~t~sK~l~~-G~~iG~~~~---~~~i~~~~~~~~~~~~~~t~~-~~~~~~aaa~aal~~~~------~--~~~~~~~~~~ 376 (474)
.++||+++. |+|+||+++ ++++++.+...-...+..+++ .|+++++++.++|+... + ++..++++++
T Consensus 254 ~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (412)
T 1ajs_A 254 QSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSM 333 (412)
T ss_dssp EECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHH
Confidence 489999996 999999998 887444322100011223455 58999999999997542 1 4566677777
Q ss_pred HHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecC-C
Q 011959 377 TGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-H 455 (474)
Q Consensus 377 ~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~-~ 455 (474)
++++.+.|+++....++....+..|.++++.+. ...+.+.+.++||++.++ +|+++. +
T Consensus 334 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gv~v~~~----~Ris~~~~ 392 (412)
T 1ajs_A 334 RSELRARLEALKTPGTWNHITDQIGMFSFTGLN-----------------PKQVEYLINQKHIYLLPS----GRINMCGL 392 (412)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCC-----------------HHHHHHHHHTTCEECCTT----SEEEGGGC
T ss_pred HHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCC-----------------HHHHHHHHHhCCEEecCC----cEEEeeeC
Confidence 777777777652000122112233444443221 134455566889999874 588766 4
Q ss_pred cHHHHHHHHHHHHHHHhhC
Q 011959 456 SSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 456 t~e~i~~~l~~l~~~~~~~ 474 (474)
+++++++++++|+++++++
T Consensus 393 ~~~~i~~~~~~l~~~l~~~ 411 (412)
T 1ajs_A 393 TTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp CTTTHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 94
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.97 E-value=2.9e-31 Score=268.96 Aligned_cols=339 Identities=13% Similarity=0.087 Sum_probs=227.4
Q ss_pred CEEEeccCChhhccCCCCCHHH--HHHHHHHHHh-c-CCCCC---CCHHHHHHHHHHHhhC-C-CCCe---EEEeCCHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQV--LAALGETMKK-G-TSFGA---PCLLENVLAEMVISAV-P-SIEM---VRFVNSGTE 166 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v--~~a~~~~~~~-~-~~~~~---~~~~~~~la~~l~~~~-~-~~~~---v~~~~sGse 166 (474)
+++|||..|... .+|+ +|.+ ++++.+++.+ . ..|+. ..++++++++++.+.. + ..++ +++++||++
T Consensus 47 ~~~i~l~~g~~~-~~~~-~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~ 124 (430)
T 2x5f_A 47 STTYNATIGMAT-NKDG-KMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTH 124 (430)
T ss_dssp TCSEECCCSSCE-ETTE-ECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHH
T ss_pred CCcEEeeeeecc-CCCC-chhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchH
Confidence 568999998532 5774 5666 7777776644 2 22321 3456666666665543 3 4567 999999999
Q ss_pred HHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCC
Q 011959 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (474)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (474)
|++.+++.. ...+++|++.+++||++...+....|..+..++.....+ ..|+++|++.+++++.+
T Consensus 125 al~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~-------------~~d~~~l~~~l~~~~~~ 189 (430)
T 2x5f_A 125 GLSLVGDLF--VNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDG-------------HYTTDSLVEALQSYNKD 189 (430)
T ss_dssp HHHHHHHHH--CCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTTS-------------CBCSHHHHHHHHHCCSS
T ss_pred HHHHHHHHH--hCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCccC-------------CcCHHHHHHHHHhcCCC
Confidence 999999952 234578999999999865433220333222211110000 01789999999864446
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHH-----hCCEEEEeccccCc-ccCCCc-c-c-cccCCCCc------eee
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-----NGALLIFDEVMTGF-RLAYGG-A-Q-EYFGVTPD------LTT 311 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~-----~g~llI~DEv~~g~-r~g~~~-~-~-~~~g~~pd------i~t 311 (474)
++++++..++|++|.+.+ .+++++|.++|++ ||++||+||+|++| +.+..+ . . ...+..++ +.+
T Consensus 190 ~~~v~i~~p~nptG~~~~-~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 268 (430)
T 2x5f_A 190 KVIMILNYPNNPTGYTPT-HKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDG 268 (430)
T ss_dssp EEEEEECSSCTTTCCCCC-HHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEE
T ss_pred CEEEEEcCCCCCCCCcCC-HHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEe
Confidence 677666555788887764 5569999999999 99999999999988 555321 2 1 22233444 348
Q ss_pred hhhhcC-CCcceEEEEe---cHHHHHhhcCCCCcccc----cCCCCChHHHHHHHHHHH-Hh---cC-CCHHHHHHHHHH
Q 011959 312 LGKIIG-GGLPVGAYGG---RRDIMEMVAPAGPMYQA----GTLSGNPLAMTAGIHTLK-RL---KE-PGTYEYLNKITG 378 (474)
Q Consensus 312 ~sK~l~-~G~~iG~~~~---~~~i~~~~~~~~~~~~~----~t~~~~~~~~aaa~aal~-~~---~~-~~~~~~~~~~~~ 378 (474)
+||.++ +|+|+||+++ ++++++.+.. .... .+++.|+++++++.++|+ .. +. +...++++++.+
T Consensus 269 ~sK~~~~~G~riG~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 345 (430)
T 2x5f_A 269 ATKEFFAWGFRVGFMTFGTSDQTTKEVLEA---KVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYE 345 (430)
T ss_dssp HHHHTTCGGGCCEEEEEBCCCHHHHHHHHH---HHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCeEEEEEecCCHHHHHHHHH---HHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHH
Confidence 999998 7999999999 9999888762 2222 577899999999999997 42 11 224455555555
Q ss_pred HHHHHHHHHhhhcCCeeEEeee-ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccCCcceEEecC-C
Q 011959 379 ELTQGIIDAGKKAGHAICGGYI-SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQFEAGFTSLA-H 455 (474)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~~~~~-~ 455 (474)
++.+.|++.....++. ..++. |.++++.+. . . ...++.+.|++ +||++.+++...+|+++. .
T Consensus 346 ~l~~~L~~~~~~~g~~-~~~~~~g~~~~~~~~-~-~------------~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~~ 410 (430)
T 2x5f_A 346 VTKEVVYADQYHSHWQ-AYDFNSGYFMAIKVH-D-V------------DPEALRKHLIDKYSIGVIALNATDIRIAFSCV 410 (430)
T ss_dssp HHHHHHTCGGGTTTEE-ECCCCBSSEEEEEES-S-S------------CHHHHHHHHHHHHCEECEECSSSEEEEEGGGS
T ss_pred HHHHHHHhhCCCCCce-eeCCCceEEEEeCCC-C-C------------CHHHHHHHHHHhCCEEEecCCCCeEEEEEecC
Confidence 5555554321123332 22333 456777774 1 0 12568888887 999999975567899877 7
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 011959 456 SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 456 t~e~i~~~l~~l~~~~~~ 473 (474)
+++++++++++|++++++
T Consensus 411 ~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 411 EKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp CGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999999875
No 95
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.97 E-value=1.8e-30 Score=259.93 Aligned_cols=339 Identities=16% Similarity=0.076 Sum_probs=221.8
Q ss_pred CCCEEEeccCChhhccCC--CCCHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCCCCCeEEE--eCCHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIG--HADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVPSIEMVRF--VNSGTEA 167 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~~~~~v~~--~~sGseA 167 (474)
.|+.+|||..|...++.+ +.+|.+.+++.+++++...++| ..++++++++++.......++|++ ++||++|
T Consensus 24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a 103 (394)
T 2ay1_A 24 PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGA 103 (394)
T ss_dssp CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHH
T ss_pred CCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhH
Confidence 356689999986555555 5689999999998865322222 245556666665332114578999 9999999
Q ss_pred HHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
++.++++.+.+.++++|++.+++||++...+.. .|..+...+....... . .|++++++.++++++.+
T Consensus 104 ~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~-~g~~~~~~~~~~~~~~---------~---~d~~~l~~~l~~~~~~~ 170 (394)
T 2ay1_A 104 LRQALELARMANPDLRVFVSDPTWPNHVSIMNF-MGLPVQTYRYFDAETR---------G---VDFEGMKADLAAAKKGD 170 (394)
T ss_dssp HHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHH-HTCCEEEEECEETTTT---------E---ECHHHHHHHHHTCCTTC
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHH-cCCceEEEecccccCC---------c---cCHHHHHHHHHhCCCCC
Confidence 999999766555778899999999996554433 3432221111000000 0 17999999998653346
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC--CCcccccc-CCCCce---eehhhhcC-CC
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQEYF-GVTPDL---TTLGKIIG-GG 319 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g--~~~~~~~~-g~~pdi---~t~sK~l~-~G 319 (474)
++++++.++|++|.+.+ .+++++|.++|++||++||+||+|++| +.+ .......+ ...+++ .++||+++ +|
T Consensus 171 ~~~~~~~~~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 249 (394)
T 2ay1_A 171 MVLLHGCCHNPTGANLT-LDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYR 249 (394)
T ss_dssp EEEEESSSCTTTCCCCC-HHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGG
T ss_pred EEEEeCCCCCCCCCCCC-HHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcC
Confidence 77777888888888765 555999999999999999999999988 542 11122211 123443 37999999 89
Q ss_pred cceEEEEe---cHHHHHhhcCCCCcccccCC-CCChHHHHHHHHHHHHh------cC--CCHHHHHHHHHHHHHHHHHHH
Q 011959 320 LPVGAYGG---RRDIMEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGELTQGIIDA 387 (474)
Q Consensus 320 ~~iG~~~~---~~~i~~~~~~~~~~~~~~t~-~~~~~~~aaa~aal~~~------~~--~~~~~~~~~~~~~l~~~L~~~ 387 (474)
+|+||+++ ++++++.+...-...+..++ +.|+++++++.++|+.. .+ ++..++++++++++.+.|+++
T Consensus 250 ~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 329 (394)
T 2ay1_A 250 ERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDL 329 (394)
T ss_dssp GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999987 67655443210000112233 34899999999888754 11 456667777777777777765
Q ss_pred hhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecC-CcHHHHHHHHHH
Q 011959 388 GKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQHTITA 466 (474)
Q Consensus 388 ~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~-~t~e~i~~~l~~ 466 (474)
....++....+..|.++++.+. . ..+.+.+.++||++.++ +|+++. ++++++++++++
T Consensus 330 ~~~~~~~~~~~~~g~~~~~~~~-------------~----~~~~~~l~~~gi~v~~~----~Ris~~~~~~~~i~~~~~~ 388 (394)
T 2ay1_A 330 SGSDRFGFVAEHRGMFSRLGAT-------------P----EQVKRIKEEFGIYMVGD----SRINIAGLNDNTIPILARA 388 (394)
T ss_dssp HTSSTTTHHHHCCSSEEECCCC-------------H----HHHHHHHHHHCEECCTT----CEEEGGGCCTTTHHHHHHH
T ss_pred CCCCCeeEEcCCceEEEeeCCC-------------H----HHHHHHHHhCCEEecCC----CeEEeecCCHhhHHHHHHH
Confidence 3211121112234556554331 0 34566777899999874 577654 599999999999
Q ss_pred HHHH
Q 011959 467 AEKV 470 (474)
Q Consensus 467 l~~~ 470 (474)
|+++
T Consensus 389 l~~~ 392 (394)
T 2ay1_A 389 IIEV 392 (394)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 9876
No 96
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.97 E-value=9.6e-29 Score=247.98 Aligned_cols=326 Identities=20% Similarity=0.181 Sum_probs=229.9
Q ss_pred CCCEEEeccCChhhccCCC-CCHHHHHHHHHHHHh-cCC-----C-CCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGH-ADDQVLAALGETMKK-GTS-----F-GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~-~~~-----~-~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~ 168 (474)
||++|+||.++ +++|+ .+|++++++.+++++ +.. . ....+...++++.++++++. +..+++++|++++
T Consensus 44 ~g~~~i~~~~~---~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~i~~~sG~~a~ 119 (401)
T 2bwn_A 44 GKQDITVWCGN---DYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQK-EAALVFSSAYNAN 119 (401)
T ss_dssp CEEEEEECSCS---CTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTC-SEEEEESCHHHHH
T ss_pred CCCcEEEeeCC---CcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCC-CcEEEECCcHHHH
Confidence 78999999987 66676 488999999999986 221 1 12456788999999999864 4444557788899
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC-CCe
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK-GEI 247 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~ 247 (474)
..++++.....+++.|++.++.|++ ....+...|. ++..+|++|+++|++++++.. +++
T Consensus 120 ~~~~~~l~~~~~gd~Vl~~~~~~~~-~~~~~~~~g~-------------------~~~~v~~~d~~~le~~l~~~~~~~~ 179 (401)
T 2bwn_A 120 DATLSTLRVLFPGLIIYSDSLNHAS-MIEGIKRNAG-------------------PKRIFRHNDVAHLRELIAADDPAAP 179 (401)
T ss_dssp HHHHHHHHHHSTTCEEEEETTCCHH-HHHHHHHSCC-------------------CEEEECTTCHHHHHHHHHHSCTTSC
T ss_pred HHHHHHHhcCCCCCEEEECchhhHH-HHHHHHHcCC-------------------eEEEEcCCCHHHHHHHHHhhccCCc
Confidence 9988853222244566666555544 3333332222 356677779999999997543 368
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--ccCCCccccccCC--CCce--eehhhhcC-CC
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGV--TPDL--TTLGKIIG-GG 319 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~--~pdi--~t~sK~l~-~G 319 (474)
++|++++++|++|.+.+ +++|.++|++||++||+||+|+ |+ +.|..+. ..+++ .+|+ .+|||+++ .|
T Consensus 180 ~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~~~~~i~~~s~sK~~~~~G 254 (401)
T 2bwn_A 180 KLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGVFG 254 (401)
T ss_dssp EEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCSCC
T ss_pred eEEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCceee-eccCccccCcEEEeechhhccCCC
Confidence 89999999999999998 9999999999999999999997 43 3443333 44454 2344 48999998 34
Q ss_pred cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeE
Q 011959 320 LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (474)
Q Consensus 320 ~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (474)
||+++++++++.+......+.. +.+.++++++++.++++.+++ ++..++++++.+++.+.|+++ ...+.
T Consensus 255 ---G~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~-- 326 (401)
T 2bwn_A 255 ---GYIAASARMVDAVRSYAPGFIF-STSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL--GMPII-- 326 (401)
T ss_dssp ---EEEEECHHHHHHHHHHCHHHHT-SBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH--TCCBC--
T ss_pred ---CEEecCHHHHHHHHHhCcCcee-cCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC--CCccc--
Confidence 8999999988877531112222 224567889999999998865 367888888899999988875 22222
Q ss_pred EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccCC-------cceEEecC--CcHHHHHHHHHH
Q 011959 397 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQF-------EAGFTSLA--HSSDDIQHTITA 466 (474)
Q Consensus 397 v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~-------~~~~~~~~--~t~e~i~~~l~~ 466 (474)
...+.++++.+.. .....++.+.|+ ++||++.++.. ..+|+++. +|++++++++++
T Consensus 327 -~~~~~~~~~~~~~-------------~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~ 392 (401)
T 2bwn_A 327 -DHGSHIVPVVIGD-------------PVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHA 392 (401)
T ss_dssp -CCSSSCEEEECCC-------------HHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHH
T ss_pred -CCCCCeEEEEeCC-------------hHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHH
Confidence 2345577776631 123457888886 78999987531 25777654 699999999999
Q ss_pred HHHHHhh
Q 011959 467 AEKVLRQ 473 (474)
Q Consensus 467 l~~~~~~ 473 (474)
|++++++
T Consensus 393 l~~~~~~ 399 (401)
T 2bwn_A 393 MDLLWAR 399 (401)
T ss_dssp HHHHC--
T ss_pred HHHHHHh
Confidence 9998765
No 97
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.97 E-value=8.8e-30 Score=257.24 Aligned_cols=332 Identities=12% Similarity=0.093 Sum_probs=226.1
Q ss_pred CEEEeccCChhhccCCCCC--HHHHHHHHHHHHhcCC--CC---CCCHHHHHHHHHHHhhCC---CCC--eEEEeCCHHH
Q 011959 99 NEYIDYVGSWGPAIIGHAD--DQVLAALGETMKKGTS--FG---APCLLENVLAEMVISAVP---SIE--MVRFVNSGTE 166 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~--p~v~~a~~~~~~~~~~--~~---~~~~~~~~la~~l~~~~~---~~~--~v~~~~sGse 166 (474)
..+|||..|++.++.|+.+ |.|++++.+++++... |+ +..++++++++++..... ..+ ++++|+||++
T Consensus 49 ~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~ 128 (420)
T 4f4e_A 49 PTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTG 128 (420)
T ss_dssp SSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred CCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHH
Confidence 4578999987667777765 9999999999887322 22 234677788888766543 356 8999999999
Q ss_pred HHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC----C---CHHHHHHH
Q 011959 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----N---DVSALENL 239 (474)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~----~---d~~~le~~ 239 (474)
|+..++++...+.++++|++.+++|+++...+ ...|.. ++.+|+ + |+++|++.
T Consensus 129 al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~-~~~g~~-------------------~~~v~~~~~~~~~~d~~~l~~~ 188 (420)
T 4f4e_A 129 ALKIGADFLRTLNPKAKVAISDPSWENHRALF-DMAGFE-------------------VVAYPYYDAKTNGVNFDGMLAA 188 (420)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEESCCHHHHHHH-HHTTCC-------------------EEEEECEETTTTEECHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHH-HHcCCe-------------------EEEeeeeccccCccCHHHHHHH
Confidence 99999876545667789999999998854433 333332 222222 2 89999999
Q ss_pred HhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC--Cccc-cccCCCCc---eeeh
Q 011959 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGAQ-EYFGVTPD---LTTL 312 (474)
Q Consensus 240 l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~--~~~~-~~~g~~pd---i~t~ 312 (474)
+++++++++++++++++|++|.+.+.++ +++|.++|++||+++|+||+|.+| ..+. .... ...+..++ +.+|
T Consensus 189 l~~~~~~~~~v~i~~p~NPtG~~~~~~~-l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~ 267 (420)
T 4f4e_A 189 LNGYEPGTIVVLHACCHNPTGVDLNDAQ-WAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSF 267 (420)
T ss_dssp HTTCCTTCEEEEECSSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEEC
T ss_pred HHhCCCCCEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeC
Confidence 9876567889999989999998776554 999999999999999999999988 5431 1111 11122233 2379
Q ss_pred hhhcC-CCcceEEEEe---cHHHHHhhcC-CCCcccccCCCCChHHHHHHHHHHHHh------cC--CCHHHHHHHHHHH
Q 011959 313 GKIIG-GGLPVGAYGG---RRDIMEMVAP-AGPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITGE 379 (474)
Q Consensus 313 sK~l~-~G~~iG~~~~---~~~i~~~~~~-~~~~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~~~~~~~~~~~ 379 (474)
||.++ .|+|+||+++ ++++++.+.. ........+.+.+++++.++.+.|+.. ++ +++++++++++++
T Consensus 268 SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (420)
T 4f4e_A 268 SKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNG 347 (420)
T ss_dssp TTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 7999999853 5665554321 001112334456777887777766532 11 4556667777777
Q ss_pred HHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecCC-cHH
Q 011959 380 LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAH-SSD 458 (474)
Q Consensus 380 l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~-t~e 458 (474)
+.+.|+++....++....+..|.++++.+. ...+.+.+.++||++.+++ |+++.. +++
T Consensus 348 l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~-----------------~~~~~~~l~~~gI~v~~~~----Ris~~~~~~~ 406 (420)
T 4f4e_A 348 LVERLKAAGIERDFSFINAQRGMFSYSGLT-----------------SAQVDRLREEFGIYAVSTG----RICVAALNTR 406 (420)
T ss_dssp HHHHHHHTTCSSCCTHHHHSCSSEEECCCC-----------------HHHHHHHHHHHCEECCTTS----EEEGGGCCTT
T ss_pred HHHHHHhcCCCCCceeECCCccEEEEeCCC-----------------HHHHHHHHHhCCEEecCCC----eEEEecCCHH
Confidence 777777653222332222344555544331 1345666778899999864 776654 889
Q ss_pred HHHHHHHHHHHHHh
Q 011959 459 DIQHTITAAEKVLR 472 (474)
Q Consensus 459 ~i~~~l~~l~~~~~ 472 (474)
++++++++|+++++
T Consensus 407 ~i~~~~~~l~~~l~ 420 (420)
T 4f4e_A 407 NLDVVANAIAAVLK 420 (420)
T ss_dssp THHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998863
No 98
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.97 E-value=5.2e-29 Score=252.20 Aligned_cols=338 Identities=13% Similarity=0.052 Sum_probs=226.1
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHH------------HhcCCCC---CCCHHHHHHHHHHHhhCC-----CCCeEE
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETM------------KKGTSFG---APCLLENVLAEMVISAVP-----SIEMVR 159 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~------------~~~~~~~---~~~~~~~~la~~l~~~~~-----~~~~v~ 159 (474)
.+|||.++. ++++ +|.+.+++.++. .....|+ +..+++.++++++.+.++ ..++++
T Consensus 37 ~~i~l~~~~--~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~ 112 (428)
T 1iay_A 37 GVIQMGLAE--NQLC--LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVV 112 (428)
T ss_dssp SBEECSSCC--CCSS--HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCE
T ss_pred ceeeecccc--chhh--HHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEE
Confidence 467887664 5665 478888887532 1112232 245777888888876542 367899
Q ss_pred EeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHH
Q 011959 160 FVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239 (474)
Q Consensus 160 ~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~ 239 (474)
+++|++++++.+++.. ...+++|++.+++||++........|..+..++.....++ ..|+++|++.
T Consensus 113 ~~~G~~~ai~~~~~~~--~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~ 178 (428)
T 1iay_A 113 MAGGATGANETIIFCL--ADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNF------------KITSKAVKEA 178 (428)
T ss_dssp EEEHHHHHHHHHHHHH--CCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTT------------CCCHHHHHHH
T ss_pred EccChHHHHHHHHHHh--CCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCC------------cCCHHHHHHH
Confidence 9999999999999953 2345789999999988544332233433222211100010 0179999998
Q ss_pred Hhc---CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCc-ccccc-------CCCC
Q 011959 240 FEN---NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGG-AQEYF-------GVTP 307 (474)
Q Consensus 240 l~~---~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~-~~~~~-------g~~p 307 (474)
+++ ...++++|+++.++|++|.+. +.+++++|.++|++||++||+||+|+++ +.+..+ ....+ ++.+
T Consensus 179 l~~~~~~~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (428)
T 1iay_A 179 YENAQKSNIKVKGLILTNPSNPLGTTL-DKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNK 257 (428)
T ss_dssp HHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCT
T ss_pred HHHHHhcCCceEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCC
Confidence 874 223678777776777888876 4566999999999999999999999987 544322 11111 2236
Q ss_pred c----eeehhhhcC-CCcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc---C--CCHHHHHHHH
Q 011959 308 D----LTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK---E--PGTYEYLNKI 376 (474)
Q Consensus 308 d----i~t~sK~l~-~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---~--~~~~~~~~~~ 376 (474)
| +.|+||++| +|+|+||+++ ++++++.+.. ...+++.|+++++++.++|+... + +++.++++++
T Consensus 258 d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 332 (428)
T 1iay_A 258 DLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARK-----MSSFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKR 332 (428)
T ss_dssp TSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHH-----HHTTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHH-----HHhcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 6 458999999 8999999988 6888887762 12346788999999888876421 1 3455566666
Q ss_pred HHHHHHHHHHHhhhcCCeeEEee-eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC------Ccc
Q 011959 377 TGELTQGIIDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ------FEA 448 (474)
Q Consensus 377 ~~~l~~~L~~~~~~~~~~~~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~------~~~ 448 (474)
++++.+.|+++ ++.. .++ .|+++++.+..... .+.......+.+.|+++ ||++.++. ...
T Consensus 333 ~~~l~~~L~~~----g~~~-~~~~~g~~~~~~~~~~~~-------~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~ 400 (428)
T 1iay_A 333 HKHFTNGLEVV----GIKC-LKNNAGLFCWMDLRPLLR-------ESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGW 400 (428)
T ss_dssp HHHHHHHHHHT----TCCB-CCCSSSSEEEEECGGGCS-------SSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSE
T ss_pred HHHHHHHHHhc----CCcc-cCCCeeEEEEEechhhcC-------CCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCE
Confidence 77777777654 3222 233 57788887743110 01112345788888876 99998864 235
Q ss_pred eEEecC-CcHHHHHHHHHHHHHHHhh
Q 011959 449 GFTSLA-HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 449 ~~~~~~-~t~e~i~~~l~~l~~~~~~ 473 (474)
+|+++. ++++++++++++|++++++
T Consensus 401 iRis~~~~~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 401 FRVCFANMDDGTVDIALARIRRFVGV 426 (428)
T ss_dssp EEEECSSSCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 788776 8999999999999999875
No 99
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.97 E-value=2.7e-29 Score=248.64 Aligned_cols=322 Identities=14% Similarity=0.124 Sum_probs=223.8
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHh
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARA 177 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~ 177 (474)
+.+|||.++. ++++ .+|+|++++.++++....| +.....+|.+.++++++ ..+++++++||++|++.+++..
T Consensus 30 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l-- 102 (365)
T 3get_A 30 KEVIKLASNE--NPFG-TPPKAIECLRQNANKAHLY--PDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK-- 102 (365)
T ss_dssp SCCEECSSCC--CTTC-SCHHHHHHHHHHGGGTTSC--CCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH--
T ss_pred CceEEecCCC--CCCC-CCHHHHHHHHHHHHhhccC--CCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH--
Confidence 6789999885 5566 7899999999998764333 22222567777777765 4689999999999999999852
Q ss_pred hcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccC
Q 011959 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 257 (474)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~ 257 (474)
..++++|++.+++|+++... +...|..+..++.. ... . .|+++|++.++ +++++|+++.++|
T Consensus 103 ~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~-~~~---------~----~d~~~l~~~l~---~~~~~v~~~~p~n 164 (365)
T 3get_A 103 LNSKNAFLQAGVTFAMYEIY-AKQCGAKCYKTQSI-THN---------L----DEFKKLYETHK---DEIKLIFLCLPNN 164 (365)
T ss_dssp CCTTCEEEECSSCCTHHHHH-HHHHTCEEEECSSS-SCC---------H----HHHHHHHHHTT---TTEEEEEEESSCT
T ss_pred hCCCCEEEEeCCChHHHHHH-HHHcCCEEEEEecC-CCC---------C----CCHHHHHHHhC---CCCCEEEEcCCCC
Confidence 34567888888888875443 33344433222110 000 0 17888888886 3688888877788
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-c--cCC--Cccccc---cCCCCceeehhhhcC-CCcceEEEEec
Q 011959 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAY--GGAQEY---FGVTPDLTTLGKIIG-GGLPVGAYGGR 328 (474)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r--~g~--~~~~~~---~g~~pdi~t~sK~l~-~G~~iG~~~~~ 328 (474)
++|.+.+.++ +.+|+++| ++|++||+||+|++| . .+. ...... .+....+.++||.++ +|+|+||++++
T Consensus 165 ptG~~~~~~~-l~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 242 (365)
T 3get_A 165 PLGECLDASE-ATEFIKGV-NEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIAN 242 (365)
T ss_dssp TTCCCCCHHH-HHHHHHTS-CTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEEC
T ss_pred CCCCCcCHHH-HHHHHHhC-CCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcC
Confidence 8999887444 66666666 679999999999877 3 432 112222 222233448999998 89999999999
Q ss_pred HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEE
Q 011959 329 RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407 (474)
Q Consensus 329 ~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~ 407 (474)
+++++.+.. ...+++.|+++++++.++|+..+. +...++++++.+++.+.|++. ++. ..++.|.++++.
T Consensus 243 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----g~~-~~~~~~~~~~~~ 312 (365)
T 3get_A 243 ANIISAFYK-----LRAPFNVSNLALKAAVAAMDDDEFTEKTLENNFSQMELYKEFAKKH----NIK-IIDSYTNFITYF 312 (365)
T ss_dssp HHHHHHHHH-----HSCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT----TCE-ECCCSSSEEEEE
T ss_pred HHHHHHHHH-----hcCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhC----CCE-ECCCCCeEEEEE
Confidence 999988863 123467899999999998873211 334455555555555555543 432 345678887777
Q ss_pred EecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC---CcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
+... ...++.+.|.++||++.++. ...+|+++. +++++++++++|+++++
T Consensus 313 ~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~-~~~~i~~l~~~l~~~l~ 365 (365)
T 3get_A 313 FDEK--------------NSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG-TSYENEKFFTEFDKILR 365 (365)
T ss_dssp CSSS--------------CHHHHHHHHHTTTEECEECGGGTCSEEEEECC-CHHHHHHHHHHHHHHHC
T ss_pred CCCC--------------CHHHHHHHHHHCCEEEEECccCCCCEEEEEcC-CHHHHHHHHHHHHHHhC
Confidence 6421 13578889999999998875 456888876 89999999999998863
No 100
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.97 E-value=4.8e-29 Score=248.92 Aligned_cols=335 Identities=16% Similarity=0.179 Sum_probs=226.1
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMG 170 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~ 170 (474)
|+.+|||..+. ..++ .+|.+.+++.+.++... .|. +..+++.++++++.+.++ ..++|++++||++|++.
T Consensus 30 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~ 106 (385)
T 1b5p_A 30 GVDLVALTAGE--PDFD-TPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFN 106 (385)
T ss_dssp TCCCEECCCSS--CSSC-CCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHH
T ss_pred CCCEEEecCCC--CCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHH
Confidence 45567887773 2333 47899999999887632 232 235678888888877654 35799999999999999
Q ss_pred HHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEE
Q 011959 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (474)
Q Consensus 171 al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (474)
+++.. ..+++.|++.+++|+++... +...|..+..++.....++ ..|+++|++.++. ++++|
T Consensus 107 ~~~~l--~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~l~~---~~~~v 168 (385)
T 1b5p_A 107 LFQAI--LDPGDEVIVLSPYWVSYPEM-VRFAGGVVVEVETLPEEGF------------VPDPERVRRAITP---RTKAL 168 (385)
T ss_dssp HHHHH--CCTTCEEEEEESCCTHHHHH-HHHTTCEEEEEECCGGGTT------------CCCHHHHHTTCCT---TEEEE
T ss_pred HHHHh--cCCCCEEEEcCCCchhHHHH-HHHcCCEEEEeecCcccCC------------CCCHHHHHHhcCC---CCEEE
Confidence 99852 34567899999999875433 3334443222111100010 0178899888763 56777
Q ss_pred EEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCc--eeehhhhcC-CCcceEEEE
Q 011959 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD--LTTLGKIIG-GGLPVGAYG 326 (474)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pd--i~t~sK~l~-~G~~iG~~~ 326 (474)
++..++|++|.+.+..+ +++|.++|++||++||+||+|..| ..+.......+.-..+ +.+|||.++ +|+|+||++
T Consensus 169 ~~~~p~NPtG~~~~~~~-l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~ 247 (385)
T 1b5p_A 169 VVNSPNNPTGAVYPKEV-LEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYAC 247 (385)
T ss_dssp EEESSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEE
T ss_pred EEeCCCCCCCCCcCHHH-HHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEEEE
Confidence 77666778888776554 999999999999999999999887 4432222222211112 237999999 799999999
Q ss_pred ecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHH---hcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeec
Q 011959 327 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR---LKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYIS 401 (474)
Q Consensus 327 ~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~---~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g 401 (474)
+++++++.+.. .....+++.+++++.++.++|+. ..+ ++..++++++++++.+.|+++ ++....+..|
T Consensus 248 ~~~~~~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~ 320 (385)
T 1b5p_A 248 GPKEVIKAMAS---VSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL----GLKAVRPSGA 320 (385)
T ss_dssp CCHHHHHHHHH---HHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TCCBCCCSBT
T ss_pred eCHHHHHHHHH---HHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHC----CCeecCCCee
Confidence 99999888762 33345677889999998888864 222 345566667777777777664 3222223334
Q ss_pred eeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.++++.+.... ....++.+.|.++||.+.++. .+.+|+++..+++++++++++|++++++
T Consensus 321 ~~~~~~~~~~~------------~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRis~~~~~~~i~~~l~~l~~~l~~ 384 (385)
T 1b5p_A 321 FYVLMDTSPIA------------PDEVRAAERLLEAGVAVVPGTDFAAFGHVRLSYATSEENLRKALERFARVLGR 384 (385)
T ss_dssp TEEEEECTTTC------------SSHHHHHHHHHHTTEECEESGGGTCTTEEEEECCSCHHHHHHHHHHGGGGC--
T ss_pred EEEEEecCCCC------------CCHHHHHHHHHHCCeEEecccccCCCCeEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 45555552100 012567888889999998863 2468999889999999999999887653
No 101
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.97 E-value=1.3e-29 Score=253.89 Aligned_cols=331 Identities=13% Similarity=0.047 Sum_probs=223.5
Q ss_pred CEEEeccCChhhccCCCCC--HHHHHHHHH-HHHhcC--CCC---CCCHHHHHHHHHHHhhCC---CCC--eEEEeCCHH
Q 011959 99 NEYIDYVGSWGPAIIGHAD--DQVLAALGE-TMKKGT--SFG---APCLLENVLAEMVISAVP---SIE--MVRFVNSGT 165 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~--p~v~~a~~~-~~~~~~--~~~---~~~~~~~~la~~l~~~~~---~~~--~v~~~~sGs 165 (474)
..+|||..|++.++.++.+ |.|++++.+ .+.... .|+ +..+++.++++++..... ..+ ++++++||+
T Consensus 26 ~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~ 105 (397)
T 3fsl_A 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGS 105 (397)
T ss_dssp SCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHH
T ss_pred CCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcH
Confidence 3578999887656677755 999999999 887532 222 224677788888766554 467 899999999
Q ss_pred HHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC----C---CHHHHHH
Q 011959 166 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----N---DVSALEN 238 (474)
Q Consensus 166 eA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~----~---d~~~le~ 238 (474)
+|++.++++.....++++|++.+++|+++...+ ...|..+ +.+++ + |+++|++
T Consensus 106 ~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~-~~~g~~~-------------------~~~~~~~~~~~~~d~~~l~~ 165 (397)
T 3fsl_A 106 GALKVGADFLKRYFPESGVWVSDPTWENHVAIF-AGAGFEV-------------------STYPWYDEATNGVRFNDLLA 165 (397)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHH-HHTTCCE-------------------EEECCEETTTTEECHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHH-HHcCCce-------------------EEEeeeeccCCcCcHHHHHH
Confidence 999999876555667789999999998854433 3334322 22222 2 8999999
Q ss_pred HHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC--CCcccccc-CCCCc---eee
Q 011959 239 LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA--YGGAQEYF-GVTPD---LTT 311 (474)
Q Consensus 239 ~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g--~~~~~~~~-g~~pd---i~t 311 (474)
.++++++++++++++.++|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+ .......+ +..++ +.+
T Consensus 166 ~l~~~~~~~~~v~~~~p~nptG~~~~~~~-l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 244 (397)
T 3fsl_A 166 TLKTLQAGSIVLLHPCCHNPTGADLTNDQ-WDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNS 244 (397)
T ss_dssp HHTTCCTTCEEEECSSSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEE
T ss_pred HHHhCCCCCEEEEeCCCCCCCCcCCCHHH-HHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEec
Confidence 99876556788888888888998876555 999999999999999999999988 432 11111111 22223 347
Q ss_pred hhhhcC-CCcceEEEEe---cHHHHHhhcCC-CCcccccCCCCChHHHHHHHHHHHHh------cC--CCHHHHHHHHHH
Q 011959 312 LGKIIG-GGLPVGAYGG---RRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRL------KE--PGTYEYLNKITG 378 (474)
Q Consensus 312 ~sK~l~-~G~~iG~~~~---~~~i~~~~~~~-~~~~~~~t~~~~~~~~aaa~aal~~~------~~--~~~~~~~~~~~~ 378 (474)
|||.++ +|+|+||+++ ++++++.+... .......+.+.+.+++.++.++|+.. .+ ++..++++++.+
T Consensus 245 ~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (397)
T 3fsl_A 245 FSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQ 324 (397)
T ss_dssp CTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 7999999964 55665543210 01111234455777877777666521 11 456677777788
Q ss_pred HHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecCC-cH
Q 011959 379 ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAH-SS 457 (474)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~-t~ 457 (474)
++.+.|++.....++....+..|.++++.+. ...+.+.+.++||++.+++ |+++.. ++
T Consensus 325 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gi~v~~g~----Ris~~~~~~ 383 (397)
T 3fsl_A 325 ELVKVLSTEMPERNFDYLLNQRGMFSYTGLS-----------------AAQVDRLREEFGVYLIASG----RMCVAGLNT 383 (397)
T ss_dssp HHHHHHHHHCTTSCCTHHHHCCSSEEECCCC-----------------HHHHHHHHHTTCEECCTTC----EEEGGGCCT
T ss_pred HHHHHHHhcCCCCCceeecCCceEEEecCCC-----------------HHHHHHHHHhCCEEECCCC----eEEEEecCH
Confidence 8888887763221222222334555554331 1345667778999999875 776554 88
Q ss_pred HHHHHHHHHHHHHH
Q 011959 458 DDIQHTITAAEKVL 471 (474)
Q Consensus 458 e~i~~~l~~l~~~~ 471 (474)
++|++++++|++++
T Consensus 384 ~~i~~~~~~l~~~l 397 (397)
T 3fsl_A 384 ANVQRVAKAFAAVM 397 (397)
T ss_dssp TTHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHhhC
Confidence 99999999998763
No 102
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.96 E-value=6.6e-29 Score=251.71 Aligned_cols=339 Identities=11% Similarity=0.096 Sum_probs=221.9
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc-----C-CCC---CCCHHHHHHHHHHHhhCC-CCCeEEEeCCHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG-----T-SFG---APCLLENVLAEMVISAVP-SIEMVRFVNSGT 165 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-----~-~~~---~~~~~~~~la~~l~~~~~-~~~~v~~~~sGs 165 (474)
.+|+++|||..| ++....+|.|++++.+++++. . .|+ ...+++.++++++.+.++ ..++|+|++|++
T Consensus 53 ~~~~~~i~l~~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~ 129 (432)
T 3ei9_A 53 YPDAQVISLGIG---DTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAK 129 (432)
T ss_dssp CTTCCCEECSSC---CCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHH
T ss_pred CCCCCeEEccCC---CCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChH
Confidence 357889999998 666568999999999998852 1 122 124556666666654334 568999999999
Q ss_pred HHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCC
Q 011959 166 EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (474)
Q Consensus 166 eA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (474)
+++..+.. ...+++.|++.+++|++....+......+..... . ....++..++.++.+.+...+++. +
T Consensus 130 ~al~~l~~---l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~l~~~-~ 197 (432)
T 3ei9_A 130 CDISRLQV---MFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTD-V-------QKYGNIEYMRCTPENGFFPDLSTV-G 197 (432)
T ss_dssp HHHHHHHH---HHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETT-T-------TEETTCEEEECCGGGTTSCCGGGC-C
T ss_pred HHHHHHHH---HcCCCCEEEEeCCCCHHHHHHHHHcCCccccccc-c-------cccCceEEeccCcccCCcCChhhC-C
Confidence 99987433 3456788999999999976655444332211100 0 000112333332111111112222 3
Q ss_pred CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcccccc-C---CCCceeehhhhcC-CC
Q 011959 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF-G---VTPDLTTLGKIIG-GG 319 (474)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~-g---~~pdi~t~sK~l~-~G 319 (474)
++++|+++.++|++|.+.+.++ +++|+++|++||++||+||+|++| ..+.......+ + ....+.||||++| +|
T Consensus 198 ~~~~v~l~~p~NPtG~~~~~~~-l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 276 (432)
T 3ei9_A 198 RTDIIFFCSPNNPTGAAATREQ-LTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTG 276 (432)
T ss_dssp CCSEEEEESSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTT
T ss_pred CCCEEEEeCCCCCCCCCCCHHH-HHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcc
Confidence 5667777777888898876555 999999999999999999999988 54433222222 1 2223458999999 89
Q ss_pred cceEEEEecHHH--------HHhhcCCCCcccccCCCCChHHHHHHHHHHHH-hcC--CCHHHHHHHHHHHHHHHHHHHh
Q 011959 320 LPVGAYGGRRDI--------MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-LKE--PGTYEYLNKITGELTQGIIDAG 388 (474)
Q Consensus 320 ~~iG~~~~~~~i--------~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-~~~--~~~~~~~~~~~~~l~~~L~~~~ 388 (474)
+|+||+++++++ ++.+. ......+++.++++++++.++++. ..+ ++..++++++.+++++.|++.
T Consensus 277 ~r~G~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 352 (432)
T 3ei9_A 277 VRLGWTVIPKKLLYSDGFPVAKDFN---RIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL- 352 (432)
T ss_dssp TCCEEEECCTTCBCTTSCBHHHHHH---HHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cceEEEEEChHHhhcchHHHHHHHH---HHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 999999999887 56554 222334556889999998888742 111 455666777777777777654
Q ss_pred hhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC------CcceEEecCCcHHHHH
Q 011959 389 KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQ 461 (474)
Q Consensus 389 ~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~~~~~~~t~e~i~ 461 (474)
++....+..|.++++.+... ...++.+.|++ +||++.|+. ...+|+++..++++|+
T Consensus 353 ---g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~l~ 415 (432)
T 3ei9_A 353 ---GYDVYGGKNAPYVWVHFPNQ--------------SSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENIL 415 (432)
T ss_dssp ---TCCEEECSSSSEEEEECTTS--------------CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCSCHHHHH
T ss_pred ---CceecCCCcceEEEEECCCC--------------CHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecCCHHHHH
Confidence 43333234677777776411 12456677765 499998752 3468999999999999
Q ss_pred HHHHHHHHHH
Q 011959 462 HTITAAEKVL 471 (474)
Q Consensus 462 ~~l~~l~~~~ 471 (474)
+++++|++--
T Consensus 416 ~~l~rl~~~~ 425 (432)
T 3ei9_A 416 EACRRFKQLY 425 (432)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998753
No 103
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.96 E-value=7.7e-29 Score=249.89 Aligned_cols=343 Identities=10% Similarity=-0.012 Sum_probs=221.1
Q ss_pred CEEEeccCChhhcc-CCCCCHHHHHHHHHHHHhcC--CCC---CCCHHHHHHHHHHHhh------C---CCCCeEEEeCC
Q 011959 99 NEYIDYVGSWGPAI-IGHADDQVLAALGETMKKGT--SFG---APCLLENVLAEMVISA------V---PSIEMVRFVNS 163 (474)
Q Consensus 99 ~~~iD~~~~~~~~~-lG~~~p~v~~a~~~~~~~~~--~~~---~~~~~~~~la~~l~~~------~---~~~~~v~~~~s 163 (474)
+.+|||..+..... ....+|.+++++.+++.+.. .|+ ...+++.++++++.+. . ...++|++++|
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g 112 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSG 112 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESH
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCC
Confidence 56789888854321 23479999999999987642 232 2346777788887731 1 14679999999
Q ss_pred HHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC-CCHHHHHHHHhc
Q 011959 164 GTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFEN 242 (474)
Q Consensus 164 GseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~d~~~le~~l~~ 242 (474)
|++|++.+++.. ..++++|++.+++||++... +...|..+..++..... .+ .|+++|++.++.
T Consensus 113 ~~~al~~~~~~l--~~~gd~vl~~~p~y~~~~~~-~~~~g~~~~~v~~~~~~-------------~~~~d~~~l~~~l~~ 176 (416)
T 1bw0_A 113 GSHGILMAITAI--CDAGDYALVPQPGFPHYETV-CKAYGIGMHFYNCRPEN-------------DWEADLDEIRRLKDD 176 (416)
T ss_dssp HHHHHHHHHHHH--CCTTCEEEEEESCCTHHHHH-HHHTTCEEEEEEEEGGG-------------TTEECHHHHHHHCCT
T ss_pred hHHHHHHHHHHh--CCCCCEEEEcCCCcHhHHHH-HHHcCcEEEEeecCccc-------------CCCCCHHHHHHHhcc
Confidence 999999999953 33468899999999986543 33334322111100000 01 179999998863
Q ss_pred CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC-----CccccccCCCCc---eeehh
Q 011959 243 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-----GGAQEYFGVTPD---LTTLG 313 (474)
Q Consensus 243 ~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-----~~~~~~~g~~pd---i~t~s 313 (474)
++++|++..++|++|.+.+ ++++++|.++|++||++||+||+|++| +.+. ......++..++ +.++|
T Consensus 177 ---~~~~v~i~~p~nptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~s 252 (416)
T 1bw0_A 177 ---KTKLLIVTNPSNPCGSNFS-RKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTA 252 (416)
T ss_dssp ---TEEEEEEESSCTTTCCCCC-HHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEEST
T ss_pred ---CCeEEEEeCCCCCCCcccC-HHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecch
Confidence 4555555555777888765 566999999999999999999999988 5553 222222222222 23799
Q ss_pred hhcC-CCcceEEEEecHH--HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHH
Q 011959 314 KIIG-GGLPVGAYGGRRD--IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDA 387 (474)
Q Consensus 314 K~l~-~G~~iG~~~~~~~--i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~ 387 (474)
|+++ +|+|+||++++++ +++.+..........+++.|+++++++.++|+...+ ++..++++++.+++.+.|+
T Consensus 253 K~~~~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~-- 330 (416)
T 1bw0_A 253 KNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIG-- 330 (416)
T ss_dssp TTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred hhCCCCCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 9987 6999999988663 433332100011223678899999999999874321 2344445555555555554
Q ss_pred hhhcCCeeEE-eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC----CcceEEecCCcHHHHH
Q 011959 388 GKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ----FEAGFTSLAHSSDDIQ 461 (474)
Q Consensus 388 ~~~~~~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~----~~~~~~~~~~t~e~i~ 461 (474)
+++....+ +..|.++++.+..... ++......+.+.|+ ++||++.++. ...+|+++.+++++++
T Consensus 331 --~~~g~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~~~~e~l~ 400 (416)
T 1bw0_A 331 --ECIGLAPTMPRGAMYLMSRIDLEKY--------RDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTRPVEVYR 400 (416)
T ss_dssp --TSTTEEECCCCBTTEEEEEECGGGB--------SSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCSCHHHHH
T ss_pred --hCCCCcccCCCeeEEEEEeCCHHHc--------CCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEecCCHHHHH
Confidence 33222223 3347777777642100 00001246777775 8899998864 3467998889999999
Q ss_pred HHHHHHHHHHhh
Q 011959 462 HTITAAEKVLRQ 473 (474)
Q Consensus 462 ~~l~~l~~~~~~ 473 (474)
+++++|.+++++
T Consensus 401 ~~l~~l~~~l~~ 412 (416)
T 1bw0_A 401 EAVERIKAFCQR 412 (416)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
No 104
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.96 E-value=4e-29 Score=246.80 Aligned_cols=313 Identities=12% Similarity=0.073 Sum_probs=212.1
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 176 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar 176 (474)
.+++|||.+|. +++|+. |.+ ++ .....| +.....+|.+.++++++ +.++|++++|++++++.+++..
T Consensus 28 ~~~~i~l~~~~--~~~~~~-~~v--a~----~~~~~Y--~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~- 95 (356)
T 1fg7_A 28 GNGDVWLNANE--YPTAVE-FQL--TQ----QTLNRY--PECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAF- 95 (356)
T ss_dssp TTCSEECSSCC--CSSCCC-CCC--CC----CCTTSC--CCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHH-
T ss_pred CCceEEeeCCC--CCCCCC-HhH--hh----hhhccC--CCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHH-
Confidence 35689999886 788874 555 22 222223 33224677777777775 4679999999999999999943
Q ss_pred hhcCC-cEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011959 177 AFTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 177 ~~~~~-~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
..++ ++|++.+++||++...+. ..|..+..++.. .+. ..|++++++.++ ++++|+++++
T Consensus 96 -~~~g~d~Vl~~~p~~~~~~~~~~-~~g~~~~~v~~~--~~~------------~~d~~~l~~~i~----~~~~v~l~~p 155 (356)
T 1fg7_A 96 -CEPGKDAILYCPPTYGMYSVSAE-TIGVECRTVPTL--DNW------------QLDLQGISDKLD----GVKVVYVCSP 155 (356)
T ss_dssp -CCTTTCEEEECSSSCTHHHHHHH-HHTCEEEECCCC--TTS------------CCCHHHHHTSCT----TEEEEEEESS
T ss_pred -hCCCCCEEEEeCCChHHHHHHHH-HcCCEEEEeeCC--CCC------------CCCHHHHHHHhc----CCCEEEEeCC
Confidence 2234 789999999999665443 344433222111 110 017888887775 5677887777
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccc-cccCCCCceeehhhhcC-CCcceEEEEecHHHH
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQ-EYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIM 332 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~-~~~g~~pdi~t~sK~l~-~G~~iG~~~~~~~i~ 332 (474)
+|++|.+.+ .+++++|.++|+ ||++||+||+|++| ........ +.++....+.|+||.+| +|+|+||++++++++
T Consensus 156 ~nptG~~~~-~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~ 233 (356)
T 1fg7_A 156 NNPTGQLIN-PQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVI 233 (356)
T ss_dssp CTTTCCCCC-HHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHH
T ss_pred CCCCCCCCC-HHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHHH
Confidence 888898876 455999999999 99999999999987 32222221 22222233458999999 899999999999999
Q ss_pred HhhcCCCCcccccCCCCChHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHhhhcCC-eeEEeeeceeEEEEE
Q 011959 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK---EPGTYEYLNKITGELTQGIIDAGKKAGH-AICGGYISGMFGFFF 408 (474)
Q Consensus 333 ~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~v~~~g~~~~i~~ 408 (474)
+.+.. ...+++.|+++++++.++|+... -++..++++++++++.+.|++ ++. ....++.|+++++.+
T Consensus 234 ~~l~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~ 304 (356)
T 1fg7_A 234 NLLMK-----VIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKE----IPCVEQVFDSETNYILARF 304 (356)
T ss_dssp HHHHH-----HSCSSCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH----STTEEEECCCSSSEEEEEE
T ss_pred HHHHH-----hcCCCCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHh----CCCceEECCCCCeEEEEEC
Confidence 88863 12356789999999988886422 123344455555556555554 332 223456678887776
Q ss_pred ecCCCcCcccccccchHHHHHHHHHHHHCCeEecc-cC----CcceEEecCCcHHHHHHHHHHHHHH
Q 011959 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP-SQ----FEAGFTSLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~-~~----~~~~~~~~~~t~e~i~~~l~~l~~~ 470 (474)
. + ..++.+.|.++||++.+ +. .+.+|+++. +++++++++++|+++
T Consensus 305 ~-~---------------~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~-~~~e~~~~~~~l~~~ 354 (356)
T 1fg7_A 305 K-A---------------SSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG-TREESQRVIDALRAE 354 (356)
T ss_dssp T-T---------------HHHHHHHHHHTTEECEECTTSTTCTTEEEEECC-CHHHHHHHHHHHHTC
T ss_pred C-C---------------HHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC-CHHHHHHHHHHHHhh
Confidence 3 0 25688888999999998 42 235788765 689999999998753
No 105
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.96 E-value=1.5e-28 Score=247.95 Aligned_cols=338 Identities=10% Similarity=0.019 Sum_probs=223.2
Q ss_pred CCEEEeccCChhhccCCC--CCHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhCCCCC---eEEEeCCHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGH--ADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAVPSIE---MVRFVNSGTEAC 168 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~-~~~~---~~~~~~~~la~~l~~~~~~~~---~v~~~~sGseA~ 168 (474)
|..+|||..|...+.-++ .++.|.+++.+..... ..|+ +..+++.++++++.... +.+ ++++++||++|+
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~i~~t~g~~~al 115 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNF-RPEGHIRSIATAGGTGGI 115 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGG-CCSSEEEEEEESHHHHHH
T ss_pred CCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhccc-CccccccEEECCchHHHH
Confidence 345677776632111222 5778888877644321 1232 24567788888886665 345 999999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC--CCC
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--KGE 246 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~ 246 (474)
..+++. ....++.|++.+++|+++...+ ...|..+..++.....+ ..|+++|++.++++ ++.
T Consensus 116 ~~~~~~--l~~~gd~Vl~~~p~~~~~~~~~-~~~g~~~~~v~~~~~~~-------------~~d~~~l~~~l~~~~~~~~ 179 (418)
T 3rq1_A 116 HHLIHN--YTEPGDEVLTADWYWGAYRVIC-SDTGRTLVTYSLFDEHN-------------NFNHEAFQNRVNELAAKQT 179 (418)
T ss_dssp HHHHHH--HSCTTCEEEEESSCCTHHHHHH-HHTTCEEEEECSBCTTS-------------SBCHHHHHHHHHHHHHHCS
T ss_pred HHHHHH--hcCCCCEEEECCCCchhHHHHH-HHcCCEEEEEeeeCCCC-------------CcCHHHHHHHHHHhhccCC
Confidence 999984 2345688999999998765433 33444332222110010 01799999988742 124
Q ss_pred eEEEEEccc-cCCCCcccCCHHHHHHHHHHHH------HhCCEEEEeccccCc-ccCC---CccccccCCCCc---ee--
Q 011959 247 IAAIILEPV-VGNSGFIAPKPDFLNAIRRITK------ENGALLIFDEVMTGF-RLAY---GGAQEYFGVTPD---LT-- 310 (474)
Q Consensus 247 ~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~------~~g~llI~DEv~~g~-r~g~---~~~~~~~g~~pd---i~-- 310 (474)
.++++++++ +|++|.+.+.++ +++|+++|+ +||++||+||+|.+| +.+. .+.....++.+| ++
T Consensus 180 ~~~vi~~~p~~NPtG~~~~~~~-l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 258 (418)
T 3rq1_A 180 NVVVIFNTPGNNPTGYSIEDKD-WDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCY 258 (418)
T ss_dssp EEEEEEECSSCTTTCCCCCHHH-HHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEE
T ss_pred CEEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEE
Confidence 456777655 888998887666 999999999 899999999999988 6543 222333455566 22
Q ss_pred ehhhhcC-CCcceEEEEe---cHHHHHhhcCCCCccc-ccCCCCChHHHHHHHHHHHHhc------C--CCHHHHHHHHH
Q 011959 311 TLGKIIG-GGLPVGAYGG---RRDIMEMVAPAGPMYQ-AGTLSGNPLAMTAGIHTLKRLK------E--PGTYEYLNKIT 377 (474)
Q Consensus 311 t~sK~l~-~G~~iG~~~~---~~~i~~~~~~~~~~~~-~~t~~~~~~~~aaa~aal~~~~------~--~~~~~~~~~~~ 377 (474)
+|||+++ +|+|+||+++ ++++++.+........ ....+.+.+++.++.++|+... + ..+.++++++.
T Consensus 259 S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 338 (418)
T 3rq1_A 259 SLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRA 338 (418)
T ss_dssp ESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999998 7999999998 8999888763111111 1223578888888887774321 1 23455666777
Q ss_pred HHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecC-Cc
Q 011959 378 GELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HS 456 (474)
Q Consensus 378 ~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~-~t 456 (474)
+++.+.|+++ ++....+..|.++++.+. + ..++.+.|.++||++.|+. ..+|+++. ++
T Consensus 339 ~~l~~~L~~~----g~~~~~~~~~~~~~~~~~-------------~---~~~~~~~l~~~gi~v~~g~-~~iRis~~~~~ 397 (418)
T 3rq1_A 339 DIFKQEAAQV----GLPMLPYRGGFFITIPTD-------------S---ANAICEELKKEHIYVIALA-NGIRIAACGIP 397 (418)
T ss_dssp HHHHHHHHHH----TCCCCCCCSSSEEEEECT-------------T---HHHHHHHHHHTTEECEECS-SEEEEEGGGSC
T ss_pred HHHHHHHHhc----CCCCCCCCceEEEEcCCC-------------C---HHHHHHHHHhCCEEEecCC-CCeEEEEecCC
Confidence 7777777765 222222233444444431 1 2567788899999999874 56899876 69
Q ss_pred HHHHHHHHHHHHHHHhhC
Q 011959 457 SDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 457 ~e~i~~~l~~l~~~~~~~ 474 (474)
++++++++++|+++++++
T Consensus 398 ~~~i~~~~~~l~~~l~~~ 415 (418)
T 3rq1_A 398 KCQMTGLAEKIYNAMKSL 415 (418)
T ss_dssp HHHHTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998763
No 106
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.96 E-value=2.8e-28 Score=244.58 Aligned_cols=328 Identities=13% Similarity=0.107 Sum_probs=217.9
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC----CCCC-CCHHHHHHHHHHHhh--CC--CCCeEEEeCCHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGA-PCLLENVLAEMVISA--VP--SIEMVRFVNSGTEAC 168 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~----~~~~-~~~~~~~la~~l~~~--~~--~~~~v~~~~sGseA~ 168 (474)
|+++|||..+. ..++ .+|.+++++.+++++.. .++| +.....+|.+.++++ ++ ..++|++++|+++++
T Consensus 32 ~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al 108 (400)
T 3asa_A 32 QHTVINLSIGD--TTQP-LNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDL 108 (400)
T ss_dssp TSCCEECSSCC--CCCC-CCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHH
T ss_pred CCceEeccCCC--CCCC-CCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHH
Confidence 67789998874 2233 68999999999887621 1223 233345677777766 33 467999999999999
Q ss_pred HHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCC-CccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 169 ~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
+.+++ .+.++++|++.+++|+++... +...|.. +..++.....++. .|+ ++ . +++
T Consensus 109 ~~~~~---~~~~gd~Vl~~~p~y~~~~~~-~~~~g~~~~~~~~~~~~~~~~------------~~l---~~----~-~~~ 164 (400)
T 3asa_A 109 FRLLS---FFGPNQTVAIQDPSYPAYLDI-ARLTGAKEIIALPCLQENAFF------------PEF---PE----D-THI 164 (400)
T ss_dssp HHHHH---HHCSSCEEEEEESCCHHHHHH-HHHTTCSEEEEEECCGGGTTC------------CCC---CT----T-CCC
T ss_pred HHHHH---HcCCCCEEEECCCCcHHHHHH-HHHcCCcceEecccchhcCcc------------cCh---hh----c-cCc
Confidence 98765 345678999999999986543 3334443 2221111000110 021 11 1 256
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC-CccccccCCCCc----eeehhhhcC-CCc
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY-GGAQEYFGVTPD----LTTLGKIIG-GGL 320 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~-~~~~~~~g~~pd----i~t~sK~l~-~G~ 320 (474)
++|++++++|++|.+.+ .+.+++|.++|++||++||+||+|++| +.+. ......++..+| +.++||.+| +|+
T Consensus 165 ~~v~l~~p~nptG~~~~-~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~Gl 243 (400)
T 3asa_A 165 DILCLCSPNNPTGTVLN-KDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGI 243 (400)
T ss_dssp SEEEEESSCTTTCCCCC-HHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTC
T ss_pred cEEEEeCCCCCCCCcCC-HHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcch
Confidence 77777777788898865 555999999999999999999999988 5443 122222221133 458999998 899
Q ss_pred ceEEEEecHHH-------HHhhcCCCCcccccCC-CCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011959 321 PVGAYGGRRDI-------MEMVAPAGPMYQAGTL-SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAG 392 (474)
Q Consensus 321 ~iG~~~~~~~i-------~~~~~~~~~~~~~~t~-~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (474)
|+||+++++++ ++.+.. .....++ +.|++++.++.++|+....++..++++++++++.+.|++. +
T Consensus 244 riG~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----g 316 (400)
T 3asa_A 244 RLGWTVIPQELTYADGHFVIQDWE---RFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT----G 316 (400)
T ss_dssp CCEEEECCTTCBCTTSCBHHHHHH---HHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT----T
T ss_pred heeEEeeChhhccchhhhHHHHHH---HHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC----C
Confidence 99999999887 554431 1122234 5789999999999986533667888888888888888764 3
Q ss_pred CeeEEeeeceeEEEE-EecCCCcCcccccccchHHHHHHHHHHHH-CCeEecccC------CcceEEecCCcHHHHHHHH
Q 011959 393 HAICGGYISGMFGFF-FTEGPVYNFEDAKKSETTKFARFYRGMLE-EGVYFAPSQ------FEAGFTSLAHSSDDIQHTI 464 (474)
Q Consensus 393 ~~~~v~~~g~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------~~~~~~~~~~t~e~i~~~l 464 (474)
+....+..|+++++. +... . + ..++.+.|++ +||++.++. ...+|+++..+++++++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~-~---------~---~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~~~e~i~~~l 383 (400)
T 3asa_A 317 FEVFGGEHAPYLWVKPTQAN-I---------S---DRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLGKREDILAAC 383 (400)
T ss_dssp CEEEECSSSSEEEEECCCTT-C---------C---TTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCSCHHHHHHHH
T ss_pred CeeeCCCCceEEEEeccCCC-C---------C---HHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeCCHHHHHHHH
Confidence 332222346778877 5321 0 0 1246667765 599998763 3468898888999999999
Q ss_pred HHHHHHHhh
Q 011959 465 TAAEKVLRQ 473 (474)
Q Consensus 465 ~~l~~~~~~ 473 (474)
++|++++++
T Consensus 384 ~~l~~~~~~ 392 (400)
T 3asa_A 384 ERLQMAPAL 392 (400)
T ss_dssp HHHHC----
T ss_pred HHHHHHHHh
Confidence 999988764
No 107
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.96 E-value=9.5e-29 Score=248.95 Aligned_cols=339 Identities=14% Similarity=0.054 Sum_probs=219.5
Q ss_pred CCCEEEeccCChhhccCCC--CCHHHHHHHHH-HHHhcC--CCC---CCCHHHHHHHHHHHhhCC---CCCeEEE--eCC
Q 011959 97 DGNEYIDYVGSWGPAIIGH--ADDQVLAALGE-TMKKGT--SFG---APCLLENVLAEMVISAVP---SIEMVRF--VNS 163 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~--~~p~v~~a~~~-~~~~~~--~~~---~~~~~~~~la~~l~~~~~---~~~~v~~--~~s 163 (474)
+|+.+|||..|...++.|+ .+|.+.+++.+ .+.... .|+ +..+++.++++++....+ ..++|++ ++|
T Consensus 27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g 106 (412)
T 1yaa_A 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLS 106 (412)
T ss_dssp CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEH
T ss_pred CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccc
Confidence 3567889988854333443 46899999998 775422 222 234566677777754432 3679999 999
Q ss_pred HHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC
Q 011959 164 GTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243 (474)
Q Consensus 164 GseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (474)
|++|++.++++.+.+.++++|++.+++|+++...+ ...|..+..++.....+. ..|+++|++.++++
T Consensus 107 ~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~-~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~l~~~ 173 (412)
T 1yaa_A 107 GTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIF-ENQGLKTATYPYWANETK------------SLDLNGFLNAIQKA 173 (412)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHH-HTTTCCEEEEECEETTTT------------EECHHHHHHHHHHS
T ss_pred hHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHH-HHcCceEEEEeeecCCCC------------ccCHHHHHHHHHhC
Confidence 99999999876666667789999999999965433 223332221111000000 01799999998764
Q ss_pred CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC---CCccc-cccCCCC---c---eeeh
Q 011959 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA---YGGAQ-EYFGVTP---D---LTTL 312 (474)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g---~~~~~-~~~g~~p---d---i~t~ 312 (474)
+...+++++..++|++|.+.+.+ .+++|.++|++||++||+||+|.+| +.+ ..... ...+..+ + +.++
T Consensus 174 ~~~~~~~~~~~p~nPtG~~~~~~-~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 252 (412)
T 1yaa_A 174 PEGSIFVLHSCAHNPTGLDPTSE-QWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSF 252 (412)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHH-HHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCCCCCCHH-HHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEecc
Confidence 33345666577777888776644 4999999999999999999999988 443 22122 1111223 2 3379
Q ss_pred hhhcCC-CcceEEEE--e-----cHH----HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc------C--CCHHHH
Q 011959 313 GKIIGG-GLPVGAYG--G-----RRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK------E--PGTYEY 372 (474)
Q Consensus 313 sK~l~~-G~~iG~~~--~-----~~~----i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~------~--~~~~~~ 372 (474)
||.++. |+|+||++ + +++ +++.+.. .....+.+.|++++.++.++|+... + ++..++
T Consensus 253 sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 329 (412)
T 1yaa_A 253 AKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAK---IIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSR 329 (412)
T ss_dssp TTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHH---HHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHH---HHhhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 999996 99999998 7 666 7776652 2223344558899999988887542 1 455666
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEe
Q 011959 373 LNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS 452 (474)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~ 452 (474)
++++++++.+.|+++....++....+..|.++++.+. ...+.+.+.++||++.+ .+|++
T Consensus 330 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~~gi~v~~----~~Ris 388 (412)
T 1yaa_A 330 ITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLT-----------------PQMVKRLEETHAVYLVA----SGRAS 388 (412)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEECCT----TSEEE
T ss_pred HHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCC-----------------HHHHHHHHHhCCEEecc----CcEEE
Confidence 7777777777777653110121111223333332210 13454455578999987 46887
Q ss_pred cCC-cHHHHHHHHHHHHHHHhh
Q 011959 453 LAH-SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 453 ~~~-t~e~i~~~l~~l~~~~~~ 473 (474)
+.. +++++++++++|+++++.
T Consensus 389 ~~~~~~~~i~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 389 IAGLNQGNVEYVAKAIDEVVRF 410 (412)
T ss_dssp GGGCCTTTHHHHHHHHHHHHHH
T ss_pred EccCCHhHHHHHHHHHHHHHHh
Confidence 654 999999999999998865
No 108
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.96 E-value=1.5e-27 Score=233.31 Aligned_cols=314 Identities=13% Similarity=0.120 Sum_probs=219.6
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHh
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLA 175 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~a 175 (474)
+.+++|||.++. +++| .+|.+.+++.++++....| +.....+|.+.++++++ ..+++++++|+++++..+++.
T Consensus 14 ~~~~~i~l~~n~--~~~~-~~~~v~~a~~~~~~~~~~y--~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~- 87 (337)
T 3p1t_A 14 AAAQAVCLAFNE--NPEA-VEPRVQAAIAAAAARINRY--PFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAE- 87 (337)
T ss_dssp CCCCCEECSSCC--CCSC-CCHHHHHHHHHHGGGTTSC--CTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHH-
T ss_pred CCCCceEeeCCC--CCCC-CCHHHHHHHHHhhhhhccC--CCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHh-
Confidence 456789999886 6777 6899999999987764433 56677888888888886 457999999999999999985
Q ss_pred HhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011959 176 RAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
+ +++.|++.+++|+++.. .+...|..+..++.....+ -|+++|++. .++++++++.+
T Consensus 88 --~-~gd~vl~~~p~~~~~~~-~~~~~g~~~~~v~~~~~~~--------------~d~~~l~~~-----~~~~~v~i~~p 144 (337)
T 3p1t_A 88 --F-SSMRFVTAWPGFDGYRA-RIAVSGLRHFEIGLTDDLL--------------LDPNDLAQV-----SRDDCVVLANP 144 (337)
T ss_dssp --S-TTSEEEEESSSCSHHHH-HHTTSCCEEEEECBCTTSS--------------BCHHHHTTC-----CTTEEEEEESS
T ss_pred --c-CCCeEEEeCCCcHHHHH-HHHHcCCEEEEecCCCCCC--------------CCHHHHHhh-----cCCCEEEEeCC
Confidence 4 67889999999987543 2323333222111110001 177877654 14577777777
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcC-CCcceEEEEecHHHHH
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 333 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~-~G~~iG~~~~~~~i~~ 333 (474)
+|++|.+.+ ++++.++|+++++ +|+||+|.+| ..+.. .....+....+.++||.++ +|+|+||+++++++++
T Consensus 145 ~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~~~~~~~-~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~ 218 (337)
T 3p1t_A 145 SNPTGQALS----AGELDQLRQRAGK-LLIDETYVDYSSFRAR-GLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIA 218 (337)
T ss_dssp CTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGGSSCSSS-CCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHH
T ss_pred CCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhhcccccc-ccccCCCEEEEeeCchhccCcchheEEEEeCHHHHH
Confidence 889999999 8889999999997 5569999877 43321 1111122222448999998 8999999999999999
Q ss_pred hhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCC
Q 011959 334 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP 412 (474)
Q Consensus 334 ~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~ 412 (474)
.+... ..+++.+++++.++.++|+.... ++.++++.++++++.+.|+++ ++. ..++.|.++++...+.
T Consensus 219 ~l~~~-----~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~-~~~~~~~~~~~~~~~~- 287 (337)
T 3p1t_A 219 AMKRK-----QWFCNVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL----GYR-VASSEANFVLVENAAG- 287 (337)
T ss_dssp HHHTT-----SCTTCSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT----TCC-BCCCSSSEEEEECTTT-
T ss_pred HHHhh-----cCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----cCE-ECCCCCeEEEEEcCCH-
Confidence 88742 23467788888888888764221 334455555666666666554 322 2345677777654321
Q ss_pred CcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
..+.+.|.++||++.++. ...+|+++. +++++++++++|+++.+
T Consensus 288 ---------------~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~-~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 288 ---------------ERTLRFLRERGIQVKDAGQFGLHHHIRISIG-REEDNDRLLAALAEYSD 335 (337)
T ss_dssp ---------------HHHHHHHHHTTEECEEGGGGTCCSEEEEECC-CHHHHHHHHHHHHHHTC
T ss_pred ---------------HHHHHHHHHCCeEEEECccCCCCCeEEEecC-CHHHHHHHHHHHHHHhh
Confidence 356778889999998874 246788866 89999999999998764
No 109
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.96 E-value=4.8e-27 Score=237.56 Aligned_cols=300 Identities=13% Similarity=0.116 Sum_probs=204.9
Q ss_pred CCHHHHHHHHHHHhhCC-C---------CCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCC
Q 011959 137 PCLLENVLAEMVISAVP-S---------IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGV 206 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~-~---------~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (474)
..+++.++++++.+.++ . .++|++++|+++|+..+++.. ...++.|++.+++|+++... +...|..+
T Consensus 80 ~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~ 156 (425)
T 2r2n_A 80 IPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMI--INPGDNVLLDEPAYSGTLQS-LHPLGCNI 156 (425)
T ss_dssp CHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHH--CCTTCEEEEESSCCHHHHHH-HGGGTCEE
T ss_pred CHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHh--CCCCCEEEEeCCCcHHHHHH-HHHcCCEE
Confidence 35677788888776554 2 258999999999999999952 33467899999999985443 33334322
Q ss_pred ccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC---------CCeEEEEEcc-ccCCCCcccCCHHHHHHHHHHH
Q 011959 207 ATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---------GEIAAIILEP-VVGNSGFIAPKPDFLNAIRRIT 276 (474)
Q Consensus 207 ~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~---------~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~ 276 (474)
..++.. ..+ .|+++|++.+++++ +++++|+++| ++|++|.+.+ .+.+++|.++|
T Consensus 157 ~~v~~~-~~~--------------~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~-~~~l~~l~~~a 220 (425)
T 2r2n_A 157 INVASD-ESG--------------IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLT-SERKKEIYELA 220 (425)
T ss_dssp EEECEE-TTE--------------ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCC-HHHHHHHHHHH
T ss_pred EEeCcC-CCC--------------CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCC-HHHHHHHHHHH
Confidence 221110 001 27999999997422 3567887765 5667888765 45599999999
Q ss_pred HHhCCEEEEeccccCc-ccCCC-cccccc---CCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCCh
Q 011959 277 KENGALLIFDEVMTGF-RLAYG-GAQEYF---GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351 (474)
Q Consensus 277 ~~~g~llI~DEv~~g~-r~g~~-~~~~~~---g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~ 351 (474)
++||++||+||+|++| +.+.. .....+ +....+.+|||++++|+|+||+++++++++.+. ......+++.|+
T Consensus 221 ~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~GlRiG~~~~~~~l~~~l~---~~~~~~~~~~~~ 297 (425)
T 2r2n_A 221 RKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGLRIGFLTGPKPLIERVI---LHIQVSTLHPST 297 (425)
T ss_dssp HHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTTCCEEEEEEHHHHHHHH---HHHHTTTCSSCH
T ss_pred HHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCccceEEEecCHHHHHHHH---HHHHHhcCCCCH
Confidence 9999999999999988 55432 111122 222334589999999999999999999988886 233445678899
Q ss_pred HHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHHHhhhcCCee-EEeeeceeEEEEEecCCCcCcccccccc
Q 011959 352 LAMTAGIHTLKRLKE-------PGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGFFFTEGPVYNFEDAKKSE 423 (474)
Q Consensus 352 ~~~aaa~aal~~~~~-------~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~~~g~~~~i~~~~~~~~~~~~~~~~~ 423 (474)
+++.++.++|+.+.+ +.+.++++++.+++.+.|++... ++.. ..+..|+++++.+.... +
T Consensus 298 ~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~p~~g~~~~~~~~~~~----------~ 365 (425)
T 2r2n_A 298 FNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLT--GLAEWHVPAAGMFLWIKVKGIN----------D 365 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS--SSEEECCCSBSSEEEEEETTCS----------C
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCeEEeCCCceEEEEEEeCCCC----------C
Confidence 999999999986421 22334444555555555554311 2221 23456778888874310 0
Q ss_pred hHHHHH-HHHHHHHCCeEecccC---------CcceEEecC-CcHHHHHHHHHHHHHHHhh
Q 011959 424 TTKFAR-FYRGMLEEGVYFAPSQ---------FEAGFTSLA-HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 424 ~~~~~~-~~~~l~~~Gv~v~~~~---------~~~~~~~~~-~t~e~i~~~l~~l~~~~~~ 473 (474)
. .. +.+.|.++||.+.|+. ...+|+++. .+++++++++++|++++++
T Consensus 366 ~---~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 366 V---KELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp C---HHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 0 23 5677889999998752 245788876 7999999999999999865
No 110
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.96 E-value=1e-27 Score=241.63 Aligned_cols=335 Identities=15% Similarity=0.107 Sum_probs=216.0
Q ss_pred CEEEeccCChhhccCCCC--CHHHHHHHHHHHHhc------CCCCCC---CHHHHHHHHHHHhhCC---CCCeEEEeCCH
Q 011959 99 NEYIDYVGSWGPAIIGHA--DDQVLAALGETMKKG------TSFGAP---CLLENVLAEMVISAVP---SIEMVRFVNSG 164 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~--~p~v~~a~~~~~~~~------~~~~~~---~~~~~~la~~l~~~~~---~~~~v~~~~sG 164 (474)
..++||..| .+.... .+.+.+++.+.+.+. ..|+.+ .++++++++++.+.++ ..++|++|+||
T Consensus 31 ~~~i~l~~g---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~ 107 (417)
T 3g7q_A 31 PGAIMLGGG---NPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGS 107 (417)
T ss_dssp -CCEECSCC---CCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCH
T ss_pred CCceEecCc---CCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCc
Confidence 457788777 322211 134455555544332 133322 3566677777765433 56899999999
Q ss_pred HHHHHHHHHHhHhhcCCc-----EEEEE-eCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC------C
Q 011959 165 TEACMGVLRLARAFTGRE-----RIIKF-EGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN------D 232 (474)
Q Consensus 165 seA~~~al~~ar~~~~~~-----~ii~~-~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~------d 232 (474)
++|++.+++... ..++ +||+. +++||++.......... ......+..++.+ |
T Consensus 108 t~al~~~~~~l~--~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~d 171 (417)
T 3g7q_A 108 QSAFFYLFNLFA--GRRADGSTKKVLFPLAPEYIGYADSGLEDDLF--------------VSARPNIELLPEGQFKYHVD 171 (417)
T ss_dssp HHHHHHHHHHHS--BC----CCBEEEESSCCCHHHHHC-----CCE--------------EECCCEEEEEGGGEEEEECC
T ss_pred HHHHHHHHHHHc--CCCccCCcceEEEeCCCccccchhhccchhhh--------------ccccCcccccCCcccccccC
Confidence 999999999532 2222 78876 88998865433211000 0000112222221 6
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCc-c--ccccCCCCce
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG-A--QEYFGVTPDL 309 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~-~--~~~~g~~pdi 309 (474)
+++|+ +. +++++|+++.++|++|.+.+.++ +++|.++|++||++||+||+|..+..+..+ . ....+....+
T Consensus 172 ~~~l~--~~---~~~~~v~~~~p~NptG~~~~~~~-~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~ 245 (417)
T 3g7q_A 172 FEHLH--IG---EETGMICVSRPTNPTGNVITDEE-LMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILC 245 (417)
T ss_dssp GGGCC--CC---TTEEEEEEESSCTTTCCCCCHHH-HHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEE
T ss_pred HHHhc--cc---cCceEEEECCCCCCCCCccCHHH-HHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCEEEE
Confidence 77776 32 36788888877888998887666 999999999999999999999644211111 0 0112222335
Q ss_pred eehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHH
Q 011959 310 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-----PGTYEYLNKITGELTQGI 384 (474)
Q Consensus 310 ~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~L 384 (474)
.+|||...+|+|+||+++++++++.+. ...+..+++.++++++++.+.|+...- +.+.++++++.+.+.+.|
T Consensus 246 ~s~sK~~~~G~r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (417)
T 3g7q_A 246 MSLSKLGLPGSRCGIIIANDKTITAIA---NMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAII 322 (417)
T ss_dssp EESGGGTCTTSCCEEEECCHHHHHHHH---HHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred EechhccCCCcceEEEEeCHHHHHHHH---HhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689996447999999999999998887 344556778899999999888864221 124455666777777777
Q ss_pred HHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-------------CcceEE
Q 011959 385 IDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------------FEAGFT 451 (474)
Q Consensus 385 ~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------------~~~~~~ 451 (474)
.+.....++....+..|.++++.+..... ...++.+.|.++||++.++. ...+|+
T Consensus 323 ~~~l~~~~~~~~~~~~g~~~~~~~~~~~~------------~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRi 390 (417)
T 3g7q_A 323 RRYLSEERCLIHKPEGAIFLWLWFKDLPI------------TTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRM 390 (417)
T ss_dssp HHHCCTTTCEEECCCBSSEEEEECTTCSS------------CHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEE
T ss_pred HHhcccCCceeeCCCcceEEEEEcCCCCC------------CHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEE
Confidence 76554444444445668888887743110 12567888899999998753 235788
Q ss_pred ecCCcHHHHHHHHHHHHHHHhh
Q 011959 452 SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 452 ~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
++..++++|++++++|.+++++
T Consensus 391 s~~~~~~~i~~~~~~l~~~l~~ 412 (417)
T 3g7q_A 391 NYVPEPDKIEAGVKILAEEIER 412 (417)
T ss_dssp ESCSCHHHHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHHHHHHHH
Confidence 8888999999999999998865
No 111
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.96 E-value=3.1e-28 Score=241.37 Aligned_cols=324 Identities=13% Similarity=0.131 Sum_probs=223.8
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcC--------CC-CCCCHHHHHHHHH-HHhhCCCCCeEEEeCCHHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--------SF-GAPCLLENVLAEM-VISAVPSIEMVRFVNSGTEACM 169 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--------~~-~~~~~~~~~la~~-l~~~~~~~~~v~~~~sGseA~~ 169 (474)
.|+|+. .+.++.+|++++++.+++.... .+ .++.+...++.++ ++++++.. .+++++||++|++
T Consensus 10 i~ld~~-----~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~-~v~~~~g~t~a~~ 83 (371)
T 2e7j_A 10 INIDPL-----QTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD-VARVTNGAREAKF 83 (371)
T ss_dssp EECCHH-----HHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS-EEEEESSHHHHHH
T ss_pred EEeccc-----ccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC-EEEEeCChHHHHH
Confidence 466653 2356679999999999886532 11 1245567889999 99988533 9999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC--CCe
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK--GEI 247 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~--~~~ 247 (474)
.+++.+ ..++++|++.+++||+.... +...|..+..++.+..... .-|+++|++.++++. +++
T Consensus 84 ~~~~~~--~~~gd~vl~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~l~~~~~~~~~ 148 (371)
T 2e7j_A 84 AVMHSL--AKKDAWVVMDENCHYSSYVA-AERAGLNIALVPKTDYPDY------------AITPENFAQTIEETKKRGEV 148 (371)
T ss_dssp HHHHHH--CCTTCEEEEETTCCHHHHHH-HHHTTCEEEEECCCCTTTC------------CCCHHHHHHHHHHHTTTSCE
T ss_pred HHHHHH--hCCCCEEEEccCcchHHHHH-HHHcCCeEEEeecccCCCC------------CcCHHHHHHHHHhhcccCCe
Confidence 999964 44567899999999886555 4444443322220011000 008999999987431 368
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEE
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAY 325 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~ 325 (474)
++|++++++|++|.+.+ +++|.++|++||++||+||+|+.+... .....++ +|++ +++|++++|.|+|++
T Consensus 149 ~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~~~~--~~~~~~~--~di~~~s~sK~~~~~~~~G~~ 220 (371)
T 2e7j_A 149 VLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIGRMP--VSLKEIG--ADFIVGSGHKSMAASGPIGVM 220 (371)
T ss_dssp EEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBTTBC--CCHHHHT--CSEEEEEHHHHSSCCSSCEEE
T ss_pred EEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEEEECccccCCCC--CChhhcC--CCEEEecCCcCCCCCCCcEEE
Confidence 89999999999999998 899999999999999999999754221 1222333 5655 689999987899999
Q ss_pred EecHHHHHh-hcCCCCccccc-----CCCCChHHHHHHHHHHHHhcCCCHHHHH--HHHHHHHHHHHHHHhhhcCCeeEE
Q 011959 326 GGRRDIMEM-VAPAGPMYQAG-----TLSGNPLAMTAGIHTLKRLKEPGTYEYL--NKITGELTQGIIDAGKKAGHAICG 397 (474)
Q Consensus 326 ~~~~~i~~~-~~~~~~~~~~~-----t~~~~~~~~aaa~aal~~~~~~~~~~~~--~~~~~~l~~~L~~~~~~~~~~~~v 397 (474)
++++++++. +...... ... +++.++..++++.++++.+.+ .+.+++ +++.+++.+.|+++ ++....
T Consensus 221 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~~----~~~~~~ 294 (371)
T 2e7j_A 221 GMKEEWAEIVLRRSEKY-KNKEVELLGCTARGATIITLMASFPHVRE-RIKRWDEEVEKARRFAAEMEKL----GIKQLG 294 (371)
T ss_dssp EECTTTTTTTTCBCSSC-TTSBGGGTTCCCCSHHHHHHHHHHHHHHH-HGGGHHHHHHHHHHHHHHHHHT----TCEEES
T ss_pred EEechhhhhhccccccC-cccccccccCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc----CcEEec
Confidence 999998877 6532211 112 456788888888888887765 666777 88888888888765 322211
Q ss_pred ee--eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc-------C--CcceE-EecC---CcHHHHHH
Q 011959 398 GY--ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS-------Q--FEAGF-TSLA---HSSDDIQH 462 (474)
Q Consensus 398 ~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------~--~~~~~-~~~~---~t~e~i~~ 462 (474)
+. .+.++++.+. ...++.+.|.++||.+.+. + ...+| +++. +|++++++
T Consensus 295 ~~~~~~~~~~~~~~----------------~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~ 358 (371)
T 2e7j_A 295 DNPHNHDLMFFHAE----------------VLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDY 358 (371)
T ss_dssp SSSCCSSEEEEECH----------------HHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCHHHHHH
T ss_pred CCCccCceEEEECC----------------CHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCHHHHHH
Confidence 21 4667777652 1256788888899998761 1 23457 6544 79999999
Q ss_pred HHHHHHHHHhhC
Q 011959 463 TITAAEKVLRQI 474 (474)
Q Consensus 463 ~l~~l~~~~~~~ 474 (474)
++++|+++++++
T Consensus 359 ~~~~l~~~~~~~ 370 (371)
T 2e7j_A 359 VLNAFKEIIEKY 370 (371)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 112
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=2.2e-27 Score=236.94 Aligned_cols=315 Identities=14% Similarity=0.059 Sum_probs=213.7
Q ss_pred CCHHHHHHHHHHHHhcCC-C-C--CCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh-----------c
Q 011959 116 ADDQVLAALGETMKKGTS-F-G--APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-----------T 179 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~-~-~--~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~-----------~ 179 (474)
.+|++.+++.+++.+... + . ...+...+++++++++++ ..+++++++||++|++.+++.++.. .
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~ 121 (397)
T 3f9t_A 42 VLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKN 121 (397)
T ss_dssp CCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCC
Confidence 578999999998875321 1 1 124567789999999987 5678999999999999999976543 2
Q ss_pred CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCC
Q 011959 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259 (474)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~ 259 (474)
+++.|++.+++|+++. ..+...|..+..++.... + .-|+++|++.++++ ++++|+++++++++
T Consensus 122 ~gd~vl~~~~~~~~~~-~~~~~~g~~~~~v~~~~~-~-------------~~d~~~l~~~i~~~--~~~~v~~~~~~npt 184 (397)
T 3f9t_A 122 EHPKIIVPITAHFSFE-KGREMMDLEYIYAPIKED-Y-------------TIDEKFVKDAVEDY--DVDGIIGIAGTTEL 184 (397)
T ss_dssp SSCEEEEETTCCTHHH-HHHHHHTCEEEEECBCTT-S-------------SBCHHHHHHHHHHS--CCCEEEEEBSCTTT
T ss_pred CCeEEEECCcchhHHH-HHHHHcCceeEEEeeCCC-C-------------cCCHHHHHHHHhhc--CCeEEEEECCCCCC
Confidence 3678888887777743 334444443222111100 0 01899999999853 56788888888889
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-c--cCC---------CccccccCCCCceeehhhhcCCCcceEEEEe
Q 011959 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAY---------GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGG 327 (474)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r--~g~---------~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~ 327 (474)
|.+.+ +++|.++|++||++||+||+|+++ . .+. .+.... ++...+.+++|.+++|+++|++++
T Consensus 185 G~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~ 259 (397)
T 3f9t_A 185 GTIDN----IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILF 259 (397)
T ss_dssp CCBCC----HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEE
T ss_pred CCCCC----HHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEE
Confidence 99988 999999999999999999999865 2 221 223333 555556689999888889999977
Q ss_pred cHH-HHHhhcCCCCccc--------ccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe
Q 011959 328 RRD-IMEMVAPAGPMYQ--------AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398 (474)
Q Consensus 328 ~~~-i~~~~~~~~~~~~--------~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~ 398 (474)
+++ +.+.+....+... +++.+.+++++.++++.+....-++..++++++.+++.+.|++. .+... ..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~--~~ 335 (397)
T 3f9t_A 260 KDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN--NFKPV--IE 335 (397)
T ss_dssp SSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCCBS--SC
T ss_pred eCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC--CCEEE--cC
Confidence 554 5554432111111 12222355666666665543222567777888888888888876 22211 22
Q ss_pred eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-cceEEec--CCcHHHHHHHHHHHHHHHh
Q 011959 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-EAGFTSL--AHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~~~~~~~--~~t~e~i~~~l~~l~~~~~ 472 (474)
+.+.++++.+.+ ...+.+.|.++||++.++.. ..+|+++ .+|++++++++++|+++++
T Consensus 336 ~~~~~~~~~~~~----------------~~~~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 336 PILNIVAIEDED----------------YKEVCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp CSSSEEEEECTT----------------HHHHHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred CCccEEEEEeCC----------------HHHHHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 455666655421 25788999999999988763 5677764 4699999999999999875
No 113
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.96 E-value=1.7e-27 Score=242.09 Aligned_cols=303 Identities=17% Similarity=0.137 Sum_probs=204.1
Q ss_pred CHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHhHhhcCC-c--------------EEEEE-eCCCCCCchhH
Q 011959 138 CLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAFTGR-E--------------RIIKF-EGCYHGHADPF 198 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~al~~ar~~~~~-~--------------~ii~~-~~~yhg~~~~~ 198 (474)
.+++.++++++.+.++ +.++|+||+||++|++.+++. +.++ + +||+. +++|+++....
T Consensus 86 ~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~---l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~ 162 (444)
T 3if2_A 86 SAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNL---FGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVH 162 (444)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHH---SSEEEECC-------CEEEEEEEESSSSCCGGGTTCC
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHH---HhCCCccccccccccccccceEEEeCCCCccchhhcc
Confidence 4677778877766543 568999999999999999995 3332 2 46664 78888754321
Q ss_pred HHhcCCCCccCCCCCCCCCCCCCCCceEEccC----------CCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHH
Q 011959 199 LVKAGSGVATLGLPDSPGVPKGATYETLTAPF----------NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 268 (474)
Q Consensus 199 ~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~----------~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (474)
... .........++.++. -|+++|++.+++..+++++|+++.++|++|.+.+.++
T Consensus 163 ~~~--------------~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~- 227 (444)
T 3if2_A 163 VEG--------------QHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEE- 227 (444)
T ss_dssp SSS--------------CCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHH-
T ss_pred ccc--------------chhhccCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHH-
Confidence 100 000001112232331 2899999875321236788888766788998876555
Q ss_pred HHHHHHHHHHhCCEEEEeccccCcccCCCc---cccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCccccc
Q 011959 269 LNAIRRITKENGALLIFDEVMTGFRLAYGG---AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG 345 (474)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~r~g~~~---~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~ 345 (474)
+++|.++|++||++||+||+|..+..+..+ .....+...++.++||.+.+|+|+||+++++++++.+. ...+..
T Consensus 228 l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~---~~~~~~ 304 (444)
T 3if2_A 228 MAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVIEAVS---AMNAVV 304 (444)
T ss_dssp HHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHCCCEEEEECCCCCcccccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHHHHHH---HHHHhc
Confidence 999999999999999999999643111111 01112333446689998557999999999999998886 333445
Q ss_pred CCCCChHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCccccc
Q 011959 346 TLSGNPLAMTAGIHTLKRLKE-----PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAK 420 (474)
Q Consensus 346 t~~~~~~~~aaa~aal~~~~~-----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~ 420 (474)
+++.++++++++.+.++.... +.+.++++++.+.+.+.|.+.+...++....+..|.++++.+.....
T Consensus 305 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~------- 377 (444)
T 3if2_A 305 NLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPI------- 377 (444)
T ss_dssp HSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSS-------
T ss_pred cCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCC-------
Confidence 678899999998888864221 12455666677777777776544434333345667888888743111
Q ss_pred ccchHHHHHHHHHHHHCCeEecccCC--------------cceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 421 KSETTKFARFYRGMLEEGVYFAPSQF--------------EAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 421 ~~~~~~~~~~~~~l~~~Gv~v~~~~~--------------~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
....+.+.|.++||++.++.. ..+|+++..++++|++++++|.+++++
T Consensus 378 -----~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~~~e~i~~~l~~l~~~~~~ 439 (444)
T 3if2_A 378 -----STLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAADEQTLIDGIKVIGEVVRE 439 (444)
T ss_dssp -----CHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSSCHHHHHHHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 125678888999999987632 257888878999999999999998865
No 114
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.95 E-value=4.3e-26 Score=228.53 Aligned_cols=328 Identities=15% Similarity=0.132 Sum_probs=222.6
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC---CCC------CCCHHHHHHHHHHHhhCCC--CCeEEEeCCHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---SFG------APCLLENVLAEMVISAVPS--IEMVRFVNSGT 165 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~------~~~~~~~~la~~l~~~~~~--~~~v~~~~sGs 165 (474)
+|+.+++|..+. .++.+|++++++.+++.+.. +.+ .+.....++.+.++++++. .+++++++||+
T Consensus 20 ~g~~~i~l~~~~----~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t 95 (406)
T 1kmj_A 20 NGLPLAYLDSAA----SAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTT 95 (406)
T ss_dssp TTEECEECCTTT----CCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHH
T ss_pred CCCceEEecCCc----cCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChh
Confidence 455544444331 14678999999999998742 111 1245567899999999864 57999999999
Q ss_pred HHHHHHHHHhHh--hcCCcEEEEEeCCCCCCchhH---HHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHH
Q 011959 166 EACMGVLRLARA--FTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF 240 (474)
Q Consensus 166 eA~~~al~~ar~--~~~~~~ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l 240 (474)
+|++.+++.++. ..++++|++.+++||+..... ....|..+...+... .+ ..|+++|++.+
T Consensus 96 ~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~-------------~~d~~~l~~~l 161 (406)
T 1kmj_A 96 EGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP-DG-------------TLQLETLPTLF 161 (406)
T ss_dssp HHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT-TS-------------CBCGGGHHHHC
T ss_pred HHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCC-CC-------------CcCHHHHHHHh
Confidence 999999997532 456789999999999876443 222344332211110 00 01788999888
Q ss_pred hcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCC
Q 011959 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG 318 (474)
Q Consensus 241 ~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~ 318 (474)
++ ++++|++++++|++|.+.+ +++|.++|++||++||+||+|+.... ...... ..+|++ +++|.++.
T Consensus 162 ~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~g~~--~~~~~~--~~~d~~~~s~~K~~g~ 230 (406)
T 1kmj_A 162 DE---KTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQAVMHH--PVDVQA--LDCDFYVFSGHKLYGP 230 (406)
T ss_dssp CT---TEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTS--CCCHHH--HTCSEEEEEGGGTTSC
T ss_pred cc---CCeEEEEeCCCccccCcCC----HHHHHHHHHHcCCEEEEEchhhcCCC--CCcccc--cCCCEEEEEchhccCC
Confidence 63 6899999999999999998 99999999999999999999974321 111222 246765 69999962
Q ss_pred -CcceEEEEecHHHHHhhcCCCCcc------------------cccCCCCChHHHHHHH-HHHHHhcC---CCHHHHHHH
Q 011959 319 -GLPVGAYGGRRDIMEMVAPAGPMY------------------QAGTLSGNPLAMTAGI-HTLKRLKE---PGTYEYLNK 375 (474)
Q Consensus 319 -G~~iG~~~~~~~i~~~~~~~~~~~------------------~~~t~~~~~~~~aaa~-aal~~~~~---~~~~~~~~~ 375 (474)
| +|++++++++++.+.+..... ...+.+.+++.+.+++ ++++.+.+ +.+.+++++
T Consensus 231 ~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 308 (406)
T 1kmj_A 231 TG--IGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQN 308 (406)
T ss_dssp TT--CEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CC--cEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 4 899999999998886421100 0112345666666666 77877653 355666666
Q ss_pred HHHHHHHHHHHHhhhcCCeeEEee--eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--------
Q 011959 376 ITGELTQGIIDAGKKAGHAICGGY--ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------- 445 (474)
Q Consensus 376 ~~~~l~~~L~~~~~~~~~~~~v~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------- 445 (474)
+.+++.+.|+++ +....... .|.++.+.+... + ..++.+.|.++||.+.++.
T Consensus 309 ~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~l~~~gi~v~~g~~~~~~~~~ 370 (406)
T 1kmj_A 309 LMHYALSQLESV----PDLTLYGPQNRLGVIAFNLGKH-----------H---AYDVGSFLDNYGIAVRTGHHCAMPLMA 370 (406)
T ss_dssp HHHHHHHHHTTS----TTEEEESCTTCCSEEEEEETTC-----------C---HHHHHHHHHHTTEECEEECTTCHHHHH
T ss_pred HHHHHHHHHhcC----CCeEEecCCCcCCEEEEEECCC-----------C---HHHHHHHHhhCCcEEEeccccchHHHH
Confidence 777777666543 21222333 577777766310 1 2467788899999998753
Q ss_pred ----CcceEEecC--CcHHHHHHHHHHHHHHHhh
Q 011959 446 ----FEAGFTSLA--HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 446 ----~~~~~~~~~--~t~e~i~~~l~~l~~~~~~ 473 (474)
...+|+++. +|++++++++++|+++++.
T Consensus 371 ~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 404 (406)
T 1kmj_A 371 YYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 404 (406)
T ss_dssp HTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 245787654 4999999999999998764
No 115
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.95 E-value=2.3e-27 Score=238.88 Aligned_cols=335 Identities=12% Similarity=0.077 Sum_probs=215.4
Q ss_pred CCEEEeccCChhhccCCC--CCHHHHHHHHHHHHhc-CCCC---CCCHHHHHHHHHHHhhC-C-CCCeEEEeCCHHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGH--ADDQVLAALGETMKKG-TSFG---APCLLENVLAEMVISAV-P-SIEMVRFVNSGTEACM 169 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~--~~p~v~~a~~~~~~~~-~~~~---~~~~~~~~la~~l~~~~-~-~~~~v~~~~sGseA~~ 169 (474)
|+.+|||..|....+-|+ .++.|.+++.+..... ..|+ +..+++.++++++.... + ..+++++++||++|++
T Consensus 36 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~ 115 (413)
T 3t18_A 36 REAVINAALGTLLDDKGKIIALPSVYDRLDEMDRSHIASYAPIEGEKDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIR 115 (413)
T ss_dssp GGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHH
T ss_pred ccceEeccccCccCCCCCcCChHHHHHHHHhcCcccccCcCCCCCCHHHHHHHHHHHhcccCccccCcEEEcCccHHHHH
Confidence 456788887733222233 5678888876643321 1232 34577888888887665 2 2339999999999999
Q ss_pred HHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC--CCCe
Q 011959 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN--KGEI 247 (474)
Q Consensus 170 ~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~ 247 (474)
.+++. ....++.|++.+++|+++.. .+...|..+..++.....+ ..|+++|++.++++ ++..
T Consensus 116 ~~~~~--~~~~gd~Vl~~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~-------------~~d~~~l~~~l~~~~~~~~~ 179 (413)
T 3t18_A 116 SAIFS--YLDEGDPLICHDYYWAPYRK-ICEEFGRNFKTFEFFTDDF-------------AFNIDVYKEAIDEGIRDSDR 179 (413)
T ss_dssp HHHHH--HCCSSCEEEEESSCCTHHHH-HHHHHTCEEEEECCBCTTS-------------SBCHHHHHHHHHHHHHHCSE
T ss_pred HHHHH--hcCCCCEEEECCCCcccHHH-HHHHhCCeEEEeeccCCCC-------------CcCHHHHHHHHHHHhhcCCC
Confidence 99994 23446788888888877544 3344454333322211110 11899999988742 1234
Q ss_pred EEEEEccc-cCCCCcccCCHHHHHHHHHHHH------HhCCEEEEeccccCc-ccCCC---ccccccCCCCce--e---e
Q 011959 248 AAIILEPV-VGNSGFIAPKPDFLNAIRRITK------ENGALLIFDEVMTGF-RLAYG---GAQEYFGVTPDL--T---T 311 (474)
Q Consensus 248 a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~------~~g~llI~DEv~~g~-r~g~~---~~~~~~g~~pdi--~---t 311 (474)
++++++++ +|++|.+.+.++ +++|+++|+ +||++||+||+|.+| +.+.. +.....++.+|+ + +
T Consensus 180 ~~vi~~~p~~NPtG~~~~~~~-l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 258 (413)
T 3t18_A 180 IASLINSPGNNPTGYSLSDEE-WDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVVAFS 258 (413)
T ss_dssp EEEEEECSSCTTTCCCCCHHH-HHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEEEEE
T ss_pred EEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEEEEEe
Confidence 47777765 788998887666 999999999 899999999999999 66532 222333455552 2 8
Q ss_pred hhhhcC-CCcceEEEEe---cHHHHHhhcCCCCccc-ccCCCCChHHHHHHHHHHHHhc------C-CCHHHHHHHHHHH
Q 011959 312 LGKIIG-GGLPVGAYGG---RRDIMEMVAPAGPMYQ-AGTLSGNPLAMTAGIHTLKRLK------E-PGTYEYLNKITGE 379 (474)
Q Consensus 312 ~sK~l~-~G~~iG~~~~---~~~i~~~~~~~~~~~~-~~t~~~~~~~~aaa~aal~~~~------~-~~~~~~~~~~~~~ 379 (474)
|||.++ +|+|+||+++ ++++++.+........ ..+.+.+++++.++.++|+... . +.+.++++++.++
T Consensus 259 ~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (413)
T 3t18_A 259 MSKSHTAYGLRSGAAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSRADV 338 (413)
T ss_dssp HHHHTTCGGGCCEEEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccCCCcCcCcEEEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 8999999998 8999888763111111 1223578888888877764321 1 2345556666666
Q ss_pred HHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecC-CcHH
Q 011959 380 LTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSD 458 (474)
Q Consensus 380 l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~-~t~e 458 (474)
+.+.|+++ ++....+..|.++++.+.+ ..++.+.|.++||++.|+ ...+|+++. .+++
T Consensus 339 l~~~l~~~----g~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~gv~v~~g-~~~iRis~~~~~~~ 397 (413)
T 3t18_A 339 FVTAAKEN----KLTMIPYFGGFFTFIPTDK----------------AFDIVKDLEKENIFTIPS-AKGIRVAICGVGEE 397 (413)
T ss_dssp HHHHHHHT----TCCCBCCCSSSCEEEECSC----------------HHHHHHHHHHTTEECEEC-SSEEEECTTTSCGG
T ss_pred HHHHHHHc----CCCccCCCceEEEEeCCCC----------------HHHHHHHHHhCCEEEecC-CCceEEEEeeCCHH
Confidence 76666654 3222222334445544311 256778889999999987 356888765 3555
Q ss_pred HHHHHHHHHHHHHhh
Q 011959 459 DIQHTITAAEKVLRQ 473 (474)
Q Consensus 459 ~i~~~l~~l~~~~~~ 473 (474)
++ +++|.+++++
T Consensus 398 ~~---l~~l~~~l~~ 409 (413)
T 3t18_A 398 KI---PKLVQRLAFY 409 (413)
T ss_dssp GH---HHHHHHHHHH
T ss_pred HH---HHHHHHHHHH
Confidence 55 7777766654
No 116
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.95 E-value=3.7e-28 Score=245.52 Aligned_cols=338 Identities=12% Similarity=0.071 Sum_probs=221.7
Q ss_pred EEeccCChhhccCCCCCHHHHHHHH--HHHHhc---CCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHH--HHH
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALG--ETMKKG---TSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACM--GVL 172 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~--~~~~~~---~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~--~al 172 (474)
.|||..|.....+...+|.+.+++. +.+..+ ..|..+.....+|.+.++++++ ..++|++++|+++++. .++
T Consensus 27 ~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~ 106 (423)
T 3ez1_A 27 NLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLT 106 (423)
T ss_dssp CEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHH
T ss_pred eEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHH
Confidence 4677766432222334567877775 433322 2231233334677777777776 5679999999999997 777
Q ss_pred HHhHhh-cC--------CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC
Q 011959 173 RLARAF-TG--------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243 (474)
Q Consensus 173 ~~ar~~-~~--------~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (474)
+..... .+ ++.|++.+++|+++...+ ...|..+..++... .+ -|+++|++.+++.
T Consensus 107 ~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~-~~~g~~~~~v~~~~-~g--------------~d~~~l~~~l~~~ 170 (423)
T 3ez1_A 107 FALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLL-QTLGFELLTVDMQS-DG--------------PDVDAVERLAGTD 170 (423)
T ss_dssp HHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHH-HHHTCEEEEEEEET-TE--------------ECHHHHHHHHHSC
T ss_pred HHHhccCCCccccccCCCCEEEEcCCCcHHHHHHH-HHcCCEEEeccCCC-CC--------------CCHHHHHHHHhhC
Confidence 743221 23 589999999998865443 33343222111100 01 1899999999632
Q ss_pred CCCeEEEEEcc-ccCCCCcccCCHHHHHHHHHHH-HHhCCEEEEeccccCc-ccC--CCcccc---------ccCCCCce
Q 011959 244 KGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRIT-KENGALLIFDEVMTGF-RLA--YGGAQE---------YFGVTPDL 309 (474)
Q Consensus 244 ~~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~-~~~g~llI~DEv~~g~-r~g--~~~~~~---------~~g~~pdi 309 (474)
+++++|+++| ++|++|.+.+.++ +++|.++| ++||++||+||+|..+ ..+ ...... ..+....+
T Consensus 171 -~~~~~v~~~~~~~NPtG~~~~~~~-l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (423)
T 3ez1_A 171 -PSVKGILFVPTYSNPGGETISLEK-ARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVF 248 (423)
T ss_dssp -TTEEEEEECSSSCTTTCCCCCHHH-HHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEE
T ss_pred -CCceEEEECCCCCCCCCcCCCHHH-HHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEE
Confidence 3688888876 4566888887655 99999999 9999999999999854 222 111111 12222335
Q ss_pred eehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHH-hcC-----CCHHHHHHHHHHHHHHH
Q 011959 310 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-LKE-----PGTYEYLNKITGELTQG 383 (474)
Q Consensus 310 ~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-~~~-----~~~~~~~~~~~~~l~~~ 383 (474)
.+|||.+.+|+|+||+++++++++.+. ......+++.+++++.++.++|+. ... ....+.++++.+.+.+.
T Consensus 249 ~S~sK~~~~G~r~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 325 (423)
T 3ez1_A 249 ASTSKITFAGAGLGFVASSEDNIRWLS---KYLGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEV 325 (423)
T ss_dssp EESTTTSCSSSSCEEEEECHHHHHHHH---HHHHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCchhhccCCcceEEEEeCHHHHHHHH---HHHhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999778999999999999998886 344556788899999999988875 111 22333444455555556
Q ss_pred HHHHhhhcC--CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----------CcceEE
Q 011959 384 IIDAGKKAG--HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFT 451 (474)
Q Consensus 384 L~~~~~~~~--~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------~~~~~~ 451 (474)
|.+.+...+ +....+..|+++++.+... ....+.+.|.++||++.+++ ...+|+
T Consensus 326 l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~--------------~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~iRi 391 (423)
T 3ez1_A 326 LRAELGEGGEYATWTLPKGGYFISLDTAEP--------------VADRVVKLAEAAGVSLTPAGATYPAGQDPHNRNLRL 391 (423)
T ss_dssp HHHHHTTTTSSEEECCCSBSSCEEEEESSS--------------CHHHHHHHHHHTTEECCCTTTTSSTTCCSSSCEEEE
T ss_pred HHHhcCcCCCceEEeCCCccEEEEEECCCC--------------cHHHHHHHHHHCCcEEecCcccccCCCCCCCCeEEE
Confidence 655444444 2222345677888887432 12567788899999999832 245788
Q ss_pred ecCC-cHHHHHHHHHHHHHHHhh
Q 011959 452 SLAH-SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 452 ~~~~-t~e~i~~~l~~l~~~~~~ 473 (474)
++.. +++++++++++|++++++
T Consensus 392 s~~~~~~~~i~~~~~~l~~~l~~ 414 (423)
T 3ez1_A 392 APTRPPVEEVRTAMQVVAACIRL 414 (423)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHH
T ss_pred EcCCCCHHHHHHHHHHHHHHHHH
Confidence 7764 999999999999998864
No 117
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.95 E-value=2e-26 Score=232.13 Aligned_cols=323 Identities=13% Similarity=0.053 Sum_probs=227.2
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC--------CCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG--------APCLLENVLAEMVISAVP-SIEMVRFVNSGTEA 167 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~--------~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA 167 (474)
+|..|+|+.+. |+.+|.|++++.+++.+..... ...+...++.++++++++ ..++++|++||+++
T Consensus 27 ~~~~yld~~~~------~~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 100 (416)
T 1qz9_A 27 EGVIYLDGNSL------GARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSIN 100 (416)
T ss_dssp TTCEECCTTTS------CCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHH
T ss_pred CCeEeecCCCc------CCCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhHH
Confidence 46788887543 4678999999999997631111 113556789999999987 45799999999999
Q ss_pred HHHHHHHhHhh----cCCcEEEEEeCCCCCCchhHHHh----c--CCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHH
Q 011959 168 CMGVLRLARAF----TGRERIIKFEGCYHGHADPFLVK----A--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237 (474)
Q Consensus 168 ~~~al~~ar~~----~~~~~ii~~~~~yhg~~~~~~~~----~--g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le 237 (474)
++.+++.++.+ .+++++|+.++.+|+.+...+.. . |. ++..++. +++|+
T Consensus 101 l~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~-------------------~~~~v~~--~~~l~ 159 (416)
T 1qz9_A 101 LFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGY-------------------TLRLVDS--PEELP 159 (416)
T ss_dssp HHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSC-------------------EEEEESS--GGGHH
T ss_pred HHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCc-------------------eEEEeCc--HHHHH
Confidence 99999865433 45566788888888855443211 1 22 2444544 67788
Q ss_pred HHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceee--hhhh
Q 011959 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKI 315 (474)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t--~sK~ 315 (474)
+.++ +++++|++++++|++|.+.+ +++|.++|++||++||+||+|+.-.. ......+ .+|+++ ++|.
T Consensus 160 ~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~g~~--~~~~~~~--~~d~~~~s~~K~ 228 (416)
T 1qz9_A 160 QAID---QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHSAGAV--PVDLHQA--GADYAIGCTYKY 228 (416)
T ss_dssp HHCS---TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTTTTS--CCCHHHH--TCSEEEECSSST
T ss_pred HHhC---CCceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEccccccCc--CCChhhc--CCCEEEecCccc
Confidence 8776 36889999999999999998 99999999999999999999962111 1112223 367764 5799
Q ss_pred cCCCcce-EEEEecHHHHHhhcCCCCc--------------------ccccCCCCChHHHHHHHHHHHHhcC---CCHHH
Q 011959 316 IGGGLPV-GAYGGRRDIMEMVAPAGPM--------------------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYE 371 (474)
Q Consensus 316 l~~G~~i-G~~~~~~~i~~~~~~~~~~--------------------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~ 371 (474)
+++|.++ |++++++++++.+.+.... ......+.|+.+++++.++|+.+.+ +++.+
T Consensus 229 l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~ 308 (416)
T 1qz9_A 229 LNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRR 308 (416)
T ss_dssp TCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CCCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9888888 9999999987766532111 0112234678888888889988764 35677
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeeEEe----eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCc
Q 011959 372 YLNKITGELTQGIIDAGKKAGHAICGG----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE 447 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~~~~~~~~v~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~ 447 (474)
+++++++++.+.|+++....++....+ ..+.++++.+.+ ...+.+.|.++||++...+..
T Consensus 309 ~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------------~~~l~~~l~~~gi~~~~~~~~ 372 (416)
T 1qz9_A 309 KSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE----------------GYAVIQALIDRGVIGDYREPR 372 (416)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT----------------HHHHHHHHHTTTEECEEETTT
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEecCC----------------HHHHHHHHHhCCcEeccCCCC
Confidence 888888888888877522102211111 135666666521 257888899999998765556
Q ss_pred ceEEecC---CcHHHHHHHHHHHHHHHhh
Q 011959 448 AGFTSLA---HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 448 ~~~~~~~---~t~e~i~~~l~~l~~~~~~ 473 (474)
.+|+++. +|++++++++++|++++++
T Consensus 373 ~lRis~~~~~~t~~~i~~~~~~l~~~~~~ 401 (416)
T 1qz9_A 373 IMRFGFTPLYTTFTEVWDAVQILGEILDR 401 (416)
T ss_dssp EEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEeCcccCCCHHHHHHHHHHHHHHHhc
Confidence 7888764 5999999999999998864
No 118
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.95 E-value=2.9e-27 Score=231.46 Aligned_cols=308 Identities=11% Similarity=0.060 Sum_probs=202.4
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC----CCCeEEEeCCHHHHHHHHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMGVLRL 174 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~----~~~~v~~~~sGseA~~~al~~ 174 (474)
.++|||.++. +.++ .+|++++++.+++.+....+++.....++.+.++++++ ..+++++++||++|++.+++.
T Consensus 19 ~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~~~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~ 95 (335)
T 1uu1_A 19 RDKTYLALNE--NPFP-FPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLM 95 (335)
T ss_dssp CCSEEESSCC--CSSC-CCHHHHHHHHHTCCGGGGGSCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHH
T ss_pred CcceECCCCC--CCCC-CCHHHHHHHHHHhhhhhhhcCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHH
Confidence 4678988885 3355 68999999999873211122222223455555555543 457999999999999999995
Q ss_pred hHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcc
Q 011959 175 ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254 (474)
Q Consensus 175 ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep 254 (474)
+ +++|++. ++||++...+ ...|..+...+. .... .+ |+++| +++++|++..
T Consensus 96 ---~--gd~Vl~~-p~y~~~~~~~-~~~g~~~~~v~~--~~~~---------~~---d~~~l--------~~~~~v~l~~ 146 (335)
T 1uu1_A 96 ---F--DRSVFFP-PTYSCYRIFA-KAVGAKFLEVPL--TKDL---------RI---PEVNV--------GEGDVVFIPN 146 (335)
T ss_dssp ---S--SEEEECS-SSCHHHHHHH-HHHTCEEEECCC--CTTS---------CC---CCCCC--------CTTEEEEEES
T ss_pred ---h--CCcEEEC-CCcHHHHHHH-HHcCCeEEEecc--CCCC---------CC---CHHHc--------CCCCEEEEeC
Confidence 3 5788888 9999865443 334443332211 1110 00 33333 1456666444
Q ss_pred ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcc-ccccCCCCceeehhhhcC-CCcceEEEEecHHH
Q 011959 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGA-QEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDI 331 (474)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~-~~~~g~~pdi~t~sK~l~-~G~~iG~~~~~~~i 331 (474)
++|++|.+.+ .+++.++++.+| +||+||+|++| +. .... .+..+....+.++||.+| +|+|+||+++++++
T Consensus 147 p~nptG~~~~----~~~l~~l~~~~~-~li~De~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~ 220 (335)
T 1uu1_A 147 PNNPTGHVFE----REEIERILKTGA-FVALDEAYYEFHGE-SYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKF 220 (335)
T ss_dssp SCTTTCCCCC----HHHHHHHHHTTC-EEEEECTTHHHHCC-CCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHH
T ss_pred CCCCCCCCCC----HHHHHHHHHhCC-EEEEECcchhhcch-hHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHH
Confidence 4778898887 445555555558 99999999877 42 1111 122222334558999999 89999999999999
Q ss_pred HHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEec
Q 011959 332 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410 (474)
Q Consensus 332 ~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~ 410 (474)
++.+... ..+++.|+++++++.++|+..+. ++..++++++++++.+.|++. ++.. .++.|.++++.+..
T Consensus 221 ~~~l~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~-~~~~~~~~~~~~~~ 290 (335)
T 1uu1_A 221 IDAYNRV-----RLPFNVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM----GYRI-TDSRGNFVFVFMEK 290 (335)
T ss_dssp HHHHHHH-----SCTTCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH----TCCB-CCCCSSEEEEECCT
T ss_pred HHHHHHh-----cCCCCcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC----CcEE-cCCCCeEEEEECCC
Confidence 8887631 13468899999999999975321 455666777777777777665 2221 24557777766521
Q ss_pred CCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecCCcHHHHHHHHHHHHHH
Q 011959 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~t~e~i~~~l~~l~~~ 470 (474)
....++.+.|.++||++.+ ....+|+++.. ++++++++++|+++
T Consensus 291 --------------~~~~~~~~~l~~~gi~v~~-~~~~iRis~~~-~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 291 --------------EEKERLLEHLRTKNVAVRS-FREGVRITIGK-REENDMILRELEVF 334 (335)
T ss_dssp --------------HHHHHHHHHHHHHTEEEEE-ETTEEEEECCC-HHHHHHHHHHHHCC
T ss_pred --------------CCHHHHHHHHHHCCEEEEE-CCCeEEEEeCC-HHHHHHHHHHHHhh
Confidence 1235688889999999998 34568888754 67899999998764
No 119
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.95 E-value=8.9e-27 Score=232.37 Aligned_cols=318 Identities=14% Similarity=0.116 Sum_probs=219.4
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CC---CCCC--HHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcCCcE
Q 011959 113 IGHADDQVLAALGETMKKGT---SF---GAPC--LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRER 183 (474)
Q Consensus 113 lG~~~p~v~~a~~~~~~~~~---~~---~~~~--~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~~~~ 183 (474)
.|+.++.|++++.+++.+.. .+ .++. ....++.+.++++++ ..+++++++||++|++.+++..+ ..++++
T Consensus 25 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~-~~~gd~ 103 (390)
T 1elu_A 25 QGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLD-WHQGDE 103 (390)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSC-CCTTCE
T ss_pred cCCCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCC-CCCCCE
Confidence 57788999999999987632 11 1222 567889999999986 45689999999999999999642 356689
Q ss_pred EEEEeCCCCCCchhH---HHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCC
Q 011959 184 IIKFEGCYHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 260 (474)
Q Consensus 184 ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G 260 (474)
|++.+++||+..... ....|..+..++....... ..|+++|++.++ +++++|++++++|++|
T Consensus 104 vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~i~---~~~~~v~~~~~~nptG 168 (390)
T 1elu_A 104 ILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQ------------GDAAAVLANHLG---PKTRLVILSHLLWNTG 168 (390)
T ss_dssp EEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSS------------SCHHHHHHTTCC---TTEEEEEEESBCTTTC
T ss_pred EEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCc------------cchHHHHHHhcC---CCceEEEEeccccCCc
Confidence 999999999865443 2233443322211100000 016888888775 3689999999999999
Q ss_pred cccCCHHHHHHHHHHHH----HhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHh
Q 011959 261 FIAPKPDFLNAIRRITK----ENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEM 334 (474)
Q Consensus 261 ~i~~~~~~l~~l~~l~~----~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~ 334 (474)
.+.+ +++|.++|+ +||++||+||+|+-.... . +.....+|++ +++|.+.+|+++|++++++++++.
T Consensus 169 ~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~--~--~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~ 240 (390)
T 1elu_A 169 QVLP----LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP--L--DFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGE 240 (390)
T ss_dssp CBCC----HHHHHHHHHHCCSSSCCEEEEECTTTBTTBC--C--CTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGG
T ss_pred eecC----HHHHHHHHhhhhhhcCcEEEEEcccccCCcC--C--ChhhcCCCEEEccccccccCCCceEEEEECHHhHhh
Confidence 9999 999999999 999999999999621211 1 1112346776 499977777889999999998887
Q ss_pred hcCCCCc-------------------ccccCCCCChHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHHHhhhc
Q 011959 335 VAPAGPM-------------------YQAGTLSGNPLAMTAGIHTLKRLKEPG----TYEYLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 335 ~~~~~~~-------------------~~~~t~~~~~~~~aaa~aal~~~~~~~----~~~~~~~~~~~l~~~L~~~~~~~ 391 (474)
+.+.... ....+.+.|+++++++.++++.+.+.+ ..++++++.+++.+.|+++ .
T Consensus 241 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~-- 317 (390)
T 1elu_A 241 INPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQL-P-- 317 (390)
T ss_dssp CCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHS-T--
T ss_pred cCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc-C--
Confidence 7632100 012234567788888888888765433 5566666667777766653 1
Q ss_pred CCeeEE--eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-CcceEEec--CCcHHHHHHHHHH
Q 011959 392 GHAICG--GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTSL--AHSSDDIQHTITA 466 (474)
Q Consensus 392 ~~~~~v--~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~~~~--~~t~e~i~~~l~~ 466 (474)
++.... ++.|.++.+.+.... ...++.+.|.++||++.++. ...+|+++ .++++++++++++
T Consensus 318 g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~~ 384 (390)
T 1elu_A 318 HVHCLATSAPQAGLVSFTVDSPL-------------GHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLAR 384 (390)
T ss_dssp TEEESCSSCCSSSEEEEEECSSS-------------CHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHH
T ss_pred CcEEecCccccccEEEEEcCCCC-------------CHHHHHHHHHHCCEEEEecCCCCeEEEecccCCCHHHHHHHHHH
Confidence 211111 356788888763210 12568888899999998874 45678874 5899999999999
Q ss_pred HHHH
Q 011959 467 AEKV 470 (474)
Q Consensus 467 l~~~ 470 (474)
|+++
T Consensus 385 l~~~ 388 (390)
T 1elu_A 385 LADF 388 (390)
T ss_dssp HTTC
T ss_pred HHhh
Confidence 8753
No 120
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.95 E-value=1.4e-26 Score=230.53 Aligned_cols=327 Identities=13% Similarity=0.073 Sum_probs=225.6
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCCC--CCeEEEeCCHHHHHHHHHHHh
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLA 175 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~~--~~~v~~~~sGseA~~~al~~a 175 (474)
+.|+|..+ -++.+|++.+++.+++.. .++ ...+...+++++++++++. .+.+++++||++|++.+++..
T Consensus 20 ~~~l~~~~------~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l 91 (386)
T 2dr1_A 20 KYKLFTAG------PVACFPEVLEIMKVQMFS--HRSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNG 91 (386)
T ss_dssp CSEECCSS------SCCCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHH
T ss_pred cceeecCC------CcCCcHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHh
Confidence 35676543 245689999988776532 221 1246778999999998863 367999999999999999953
Q ss_pred HhhcCCcEEEEEeCCCCCC-chhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcc
Q 011959 176 RAFTGRERIIKFEGCYHGH-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254 (474)
Q Consensus 176 r~~~~~~~ii~~~~~yhg~-~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep 254 (474)
..++++|++.+++||+. ........|..+..++... .+ ..|+++|++.+++. +++++|++++
T Consensus 92 --~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~-~~~~~v~~~~ 154 (386)
T 2dr1_A 92 --VSKGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEP-GK-------------AVKPEDLDDALRKN-PDVEAVTITY 154 (386)
T ss_dssp --SCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TC-------------CCCHHHHHHHHHHC-TTCCEEEEES
T ss_pred --hcCCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCC-CC-------------CCCHHHHHHHHhcC-CCCcEEEEEe
Confidence 34568899999999883 2222233343222211110 00 13899999999643 3578888889
Q ss_pred ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHH
Q 011959 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIM 332 (474)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~ 332 (474)
++|++|.+.+ +++|.++|++||++||+||+|+.+.. ......+ .+|++ +++|+++++.++|+++++++++
T Consensus 155 ~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~~~--~~~~~~~--~~di~~~s~sK~~~~~~g~G~~~~~~~~~ 226 (386)
T 2dr1_A 155 NETSTGVLNP----LPELAKVAKEHDKLVFVDAVSAMGGA--DIKFDKW--GLDVVFSSSQKAFGVPPGLAIGAFSERFL 226 (386)
T ss_dssp EETTTTEECC----HHHHHHHHHHTTCEEEEECTTTBTTB--CCCTTTT--TCSEEEEETTSTTCCCSSCEEEEECHHHH
T ss_pred ecCCcchhCC----HHHHHHHHHHcCCeEEEEccccccCc--ccccccc--CCcEEEEeccccccCCCceEEEEECHHHH
Confidence 8899999988 99999999999999999999974311 1112222 35766 5669999655699999999998
Q ss_pred HhhcCCC-------------Cc--ccccCCCCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011959 333 EMVAPAG-------------PM--YQAGTLSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGH 393 (474)
Q Consensus 333 ~~~~~~~-------------~~--~~~~t~~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (474)
+.+.... .. ....+++.|+++++++.++|+.+.+. +..++++++.+++.+.|+++ ...+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~--g~~~ 304 (386)
T 2dr1_A 227 EIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREI--GLDI 304 (386)
T ss_dssp HHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHT--TCCB
T ss_pred HHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc--CCee
Confidence 8774210 00 12345678889999999999876543 56777888888888888775 2222
Q ss_pred eeE-EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecC--CcHHHHHHHHHH
Q 011959 394 AIC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLA--HSSDDIQHTITA 466 (474)
Q Consensus 394 ~~~-v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~--~t~e~i~~~l~~ 466 (474)
... ....+.++++.+... ....++.+.|.++||.+.++. ...+|+++. +|++++++++++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~ 371 (386)
T 2dr1_A 305 LAEPGHESPTITAVLTPPG-------------IKGDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDN 371 (386)
T ss_dssp SSCTTCBCSSEEEEECCTT-------------CCHHHHHHHHHHTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHH
T ss_pred CcCccccCCceEEEEcCCC-------------CCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 110 001467777776421 012578889999999998863 346788766 799999999999
Q ss_pred HHHHHhh
Q 011959 467 AEKVLRQ 473 (474)
Q Consensus 467 l~~~~~~ 473 (474)
|++++++
T Consensus 372 l~~~~~~ 378 (386)
T 2dr1_A 372 LREVINE 378 (386)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998864
No 121
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.95 E-value=1.1e-27 Score=242.05 Aligned_cols=336 Identities=11% Similarity=0.038 Sum_probs=216.1
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHH--Hhc-CCCCCCC-HHHHHHHHHHHhhCC-CCCeEEEeCCHHHHH--HHHHH
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETM--KKG-TSFGAPC-LLENVLAEMVISAVP-SIEMVRFVNSGTEAC--MGVLR 173 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~--~~~-~~~~~~~-~~~~~la~~l~~~~~-~~~~v~~~~sGseA~--~~al~ 173 (474)
+|||..|.....+...++.+++++.+++ ..+ ..++|+. ....+|.+.++++++ ..++|++|+|+++++ ..+++
T Consensus 34 ~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~ 113 (422)
T 3d6k_A 34 SLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISW 113 (422)
T ss_dssp CEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHH
T ss_pred eEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHH
Confidence 5788877421000124557777776653 122 1122322 213455555555554 567999999999997 55555
Q ss_pred HhHhhc---C--------CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhc
Q 011959 174 LARAFT---G--------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFEN 242 (474)
Q Consensus 174 ~ar~~~---~--------~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~ 242 (474)
... -. + ++.|++.+++|+++...+. ..|..+..++... .+ .|+++|++.++.
T Consensus 114 ~l~-~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~-~~g~~~~~v~~~~-~g--------------~d~~~l~~~l~~ 176 (422)
T 3d6k_A 114 SYT-WGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITE-HFGFEMINVPMTD-EG--------------PDMGVVRELVKD 176 (422)
T ss_dssp HHH-HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHH-HHTCEEEEEEEET-TE--------------ECHHHHHHHHTS
T ss_pred Hhc-CcccccccccccCCCCEEEEeCCccHHHHHHHH-HcCCEEEecCCCC-CC--------------CCHHHHHHHHhc
Confidence 321 11 1 2369999999998654433 3343222111100 01 289999999874
Q ss_pred CCCCeEEEEEcc-ccCCCCcccCCHHHHHHHHHHHH-HhCCEEEEecccc--Cc-ccCCCc-cc-------cccCCCCce
Q 011959 243 NKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRITK-ENGALLIFDEVMT--GF-RLAYGG-AQ-------EYFGVTPDL 309 (474)
Q Consensus 243 ~~~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~~-~~g~llI~DEv~~--g~-r~g~~~-~~-------~~~g~~pdi 309 (474)
. ++++|++.| ++|++|.+.+ .+++++|.++|+ +||++||+||+|. +| +.+... .. +..+...++
T Consensus 177 ~--~~~~v~~~~~~~NPtG~~~~-~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (422)
T 3d6k_A 177 P--QVKGMWTVPVFGNPTGVTFS-EQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFM 253 (422)
T ss_dssp T--TEEEEEECCSSCTTTCCCCC-HHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEE
T ss_pred C--CCeEEEEcCCCCCCCCCCCC-HHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEE
Confidence 2 578888555 5566887765 555999999999 9999999999996 46 443211 11 122334455
Q ss_pred eehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHH
Q 011959 310 TTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK---E--PGTYEYLNKITGELTQGI 384 (474)
Q Consensus 310 ~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---~--~~~~~~~~~~~~~l~~~L 384 (474)
.+|||..++|+|+||+++++++++.+. ......+++.|++++.++.++|+... + +...+.++++.+++.+.|
T Consensus 254 ~S~SK~~~~GlriG~~~~~~~l~~~l~---~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L 330 (422)
T 3d6k_A 254 SSTSKITHAGSGVSFFASSKENIEWYA---SHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEIL 330 (422)
T ss_dssp EESTTTSCTTSSCEEEECCHHHHHHHH---HHHHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhhhcCcccceEEEEeCHHHHHHHH---HHHHhhcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999668999999999999998886 33344567889999999988885311 1 233444555666777777
Q ss_pred HHHhhhcCCeeE-EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----------CcceEEec
Q 011959 385 IDAGKKAGHAIC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTSL 453 (474)
Q Consensus 385 ~~~~~~~~~~~~-v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------~~~~~~~~ 453 (474)
.+.....+.... .+..|+++++.+... + ...+.+.|.++||++.+++ ...+|+++
T Consensus 331 ~~~l~~~~~~~~~~p~~g~~~~~~~~~~-----------~---~~~~~~~l~~~gV~v~~~g~~f~~~~~~~~~~iRis~ 396 (422)
T 3d6k_A 331 DSRLSEYGVAKWTSPTGGYFISVDVVPG-----------T---ASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAP 396 (422)
T ss_dssp HHHHGGGTCEEECCCSBSSCEEEEESTT-----------C---HHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECC
T ss_pred HHhcCcCCceEEeCCCcceEEEEECCCC-----------C---HHHHHHHHHHCCeEEEcCccccCCCCCCCCCeEEEec
Confidence 665444443222 334677888887421 1 2457788889999999832 23578887
Q ss_pred C-CcHHHHHHHHHHHHHHHhh
Q 011959 454 A-HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 454 ~-~t~e~i~~~l~~l~~~~~~ 473 (474)
. .+++++++++++|++++++
T Consensus 397 ~~~~~e~i~~~~~~l~~~l~~ 417 (422)
T 3d6k_A 397 SLPPVAELEVAMDGFATCVLM 417 (422)
T ss_dssp SSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 7 6999999999999998764
No 122
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.95 E-value=1.5e-27 Score=241.46 Aligned_cols=296 Identities=10% Similarity=0.009 Sum_probs=201.2
Q ss_pred HHHHHHHHhhCC-CCCeEEEeCCHHHHH--HHHHHHhHhh-cC---------CcEEEEEeCCCCCCchhHHHhcCCCCcc
Q 011959 142 NVLAEMVISAVP-SIEMVRFVNSGTEAC--MGVLRLARAF-TG---------RERIIKFEGCYHGHADPFLVKAGSGVAT 208 (474)
Q Consensus 142 ~~la~~l~~~~~-~~~~v~~~~sGseA~--~~al~~ar~~-~~---------~~~ii~~~~~yhg~~~~~~~~~g~~~~~ 208 (474)
.+|.+.++++++ ..++|++|+|+++++ +.+++..... .+ ++.|++.+++|+++...+ ...|..+..
T Consensus 81 ~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~-~~~g~~~~~ 159 (427)
T 3ppl_A 81 VDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSIT-ERFGFEMIS 159 (427)
T ss_dssp HHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHH-HHTTCEEEE
T ss_pred HHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHH-HHcCCEEEE
Confidence 455555555544 568999999999999 5777743221 21 688999999998854433 333432221
Q ss_pred CCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcc-ccCCCCcccCCHHHHHHHHHHH-HHhCCEEEEe
Q 011959 209 LGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP-VVGNSGFIAPKPDFLNAIRRIT-KENGALLIFD 286 (474)
Q Consensus 209 ~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep-~~~~~G~i~~~~~~l~~l~~l~-~~~g~llI~D 286 (474)
++... .+ -|+++|++.++. +++++|+++| .+|++|.+.+.++ +++|.++| ++||++||+|
T Consensus 160 v~~~~-~g--------------~d~~~l~~~l~~--~~~~~v~~~p~~~NPtG~~~~~~~-~~~l~~~a~~~~~~~ii~D 221 (427)
T 3ppl_A 160 VPMNE-DG--------------PDMDAVEELVKN--PQVKGMWVVPVFSNPTGFTVTEDV-AKRLSAMETAAPDFRVVWD 221 (427)
T ss_dssp EEEET-TE--------------ECHHHHHHHTTS--TTEEEEEECCSSCTTTCCCCCHHH-HHHHHHCCCSSTTCEEEEE
T ss_pred eCCCC-CC--------------CCHHHHHHHHhc--CCCeEEEECCCCCCCCCccCCHHH-HHHHHHHHhhcCCCEEEEE
Confidence 11100 01 189999999853 3688898886 4566888887666 99999999 9999999999
Q ss_pred ccccCc-ccCCC----cccc------ccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCCcccccCCCCChHHHH
Q 011959 287 EVMTGF-RLAYG----GAQE------YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMT 355 (474)
Q Consensus 287 Ev~~g~-r~g~~----~~~~------~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~a 355 (474)
|+|.++ ..+.. ...+ ..+...++.||||.+++|+|+||+++++++++.+. ......+++.+++.+.
T Consensus 222 e~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~q~ 298 (427)
T 3ppl_A 222 NAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYT---GHAGIRGIGPNKVNQL 298 (427)
T ss_dssp CTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHH---HHHHHHCSCCCHHHHH
T ss_pred CCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHH---HHhhcccCCCCHHHHH
Confidence 999885 33221 1111 22334446689999778999999999999998886 3334557788999999
Q ss_pred HHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHHHHhhhcC-CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHH
Q 011959 356 AGIHTLKRL---KE--PGTYEYLNKITGELTQGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR 429 (474)
Q Consensus 356 aa~aal~~~---~~--~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 429 (474)
++.++|+.. .+ ....+.++++.+.+.+.|.+.+...+ +....+..|+++++.+... ....
T Consensus 299 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~--------------~~~~ 364 (427)
T 3ppl_A 299 AHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG--------------TASR 364 (427)
T ss_dssp HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT--------------CHHH
T ss_pred HHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc--------------hHHH
Confidence 888887531 11 23445555566666666665444333 2223344677888877431 1256
Q ss_pred HHHHHHHCCeEecccC----------CcceEEecCC-cHHHHHHHHHHHHHHHhh
Q 011959 430 FYRGMLEEGVYFAPSQ----------FEAGFTSLAH-SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 430 ~~~~l~~~Gv~v~~~~----------~~~~~~~~~~-t~e~i~~~l~~l~~~~~~ 473 (474)
+.+.|.++||++.+++ ...+|+++.. ++++|++++++|.+++++
T Consensus 365 ~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~~ 419 (427)
T 3ppl_A 365 VAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPPVEELEVAMDGVATCVLL 419 (427)
T ss_dssp HHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 7888899999999832 2457887666 899999999999998864
No 123
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.95 E-value=3.8e-25 Score=222.79 Aligned_cols=331 Identities=14% Similarity=0.136 Sum_probs=226.0
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC---C---CCCC---CHHHHHHHHHHHhhCCC--CCeEEEeCCH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT---S---FGAP---CLLENVLAEMVISAVPS--IEMVRFVNSG 164 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~---~~~~---~~~~~~la~~l~~~~~~--~~~v~~~~sG 164 (474)
.+|+++++|..+. + ++.++.|++++.+++.+.. + +.+. .....++.+.++++++. .+++++++||
T Consensus 24 ~~g~~~i~l~~~~---~-~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~ 99 (420)
T 1t3i_A 24 INGHPLVYLDNAA---T-SQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNA 99 (420)
T ss_dssp ETTEECEECBTTT---C-CCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSH
T ss_pred cCCCceEEecCCc---c-CCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCCh
Confidence 3677888887763 2 3678999999999987631 1 1111 24567889999998853 4789999999
Q ss_pred HHHHHHHHHHhHh--hcCCcEEEEEeCCCCCCchh---HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHH
Q 011959 165 TEACMGVLRLARA--FTGRERIIKFEGCYHGHADP---FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239 (474)
Q Consensus 165 seA~~~al~~ar~--~~~~~~ii~~~~~yhg~~~~---~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~ 239 (474)
++|++.+++.++. ..++++|++.+++||+.... .....|..+..++... .+ ..|+++|++.
T Consensus 100 t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~ 165 (420)
T 1t3i_A 100 TEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDE-QE-------------SFDLEHFKTL 165 (420)
T ss_dssp HHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCT-TS-------------SBCHHHHHHH
T ss_pred HHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCC-CC-------------CcCHHHHHHh
Confidence 9999999997521 45668899999999996422 2223344332211110 00 0289999998
Q ss_pred HhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcC
Q 011959 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIG 317 (474)
Q Consensus 240 l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~ 317 (474)
+++ ++++|++++++|++|.+.+ +++|.++|++||++||+||+|+.... ......++ +|++ +++|.++
T Consensus 166 l~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~~~--~~~~~~~~--~di~~~s~sK~~~ 234 (420)
T 1t3i_A 166 LSE---KTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQSAPHY--PLDVQLID--CDWLVASGHKMCA 234 (420)
T ss_dssp CCT---TEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTTTTS--CCCHHHHT--CSEEEEEGGGTTS
T ss_pred hCC---CceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhccCCc--cCchhhcC--CCEEEEehhhhcC
Confidence 863 6889999999999999998 99999999999999999999963311 11222333 6766 5669776
Q ss_pred CCcceEEEEecHHHHHhhcCCCCcc-----------------cccCCCCChHHHHHHHH-HHHHhcC---CCHHHHHHHH
Q 011959 318 GGLPVGAYGGRRDIMEMVAPAGPMY-----------------QAGTLSGNPLAMTAGIH-TLKRLKE---PGTYEYLNKI 376 (474)
Q Consensus 318 ~G~~iG~~~~~~~i~~~~~~~~~~~-----------------~~~t~~~~~~~~aaa~a-al~~~~~---~~~~~~~~~~ 376 (474)
+ ..+|++++++++++.+....... ...+.+.+++.+.+++. +++.+.+ +.+.++++++
T Consensus 235 ~-~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~ 313 (420)
T 1t3i_A 235 P-TGIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVEL 313 (420)
T ss_dssp C-TTCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred C-CceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3 23999999999998886421110 00123456677776665 6776654 4566677777
Q ss_pred HHHHHHHHHHHhhhcCCeeEEe-----eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc-------
Q 011959 377 TGELTQGIIDAGKKAGHAICGG-----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS------- 444 (474)
Q Consensus 377 ~~~l~~~L~~~~~~~~~~~~v~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~------- 444 (474)
.+++.+.|+++ . ++....+ +.|.++.+.+... + ..++.+.|.++||.+.++
T Consensus 314 ~~~l~~~L~~~-~--g~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~l~~~gi~v~~~~~~~~~~ 376 (420)
T 1t3i_A 314 THYLWQGLGQI-P--QLRLYGPNPKHGDRAALASFNVAGL-----------H---ASDVATMVDQDGIAIRSGHHCTQPL 376 (420)
T ss_dssp HHHHHHHHHTC-T--TEEEESCCGGGSCBCSEEEEEETTB-----------C---HHHHHHHHHTTTEECBCSCTTCHHH
T ss_pred HHHHHHHHHhC-C--CeEEeCCCccccccCCEEEEEECCC-----------C---HHHHHHHHHHCCeEEeeccccchHH
Confidence 77777777653 1 2221112 2377777776310 1 246778888999999886
Q ss_pred ----C-CcceEEecC--CcHHHHHHHHHHHHHHHhh
Q 011959 445 ----Q-FEAGFTSLA--HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 445 ----~-~~~~~~~~~--~t~e~i~~~l~~l~~~~~~ 473 (474)
+ ...+|+++. ++++++++++++|++++++
T Consensus 377 ~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 412 (420)
T 1t3i_A 377 HRLFDASGSARASLYFYNTKEEIDLFLQSLQATIRF 412 (420)
T ss_dssp HHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 2 356788765 5999999999999998865
No 124
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.94 E-value=2.7e-25 Score=221.01 Aligned_cols=323 Identities=18% Similarity=0.209 Sum_probs=218.2
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC-C--C-----CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHH
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF-G--A-----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMG 170 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~--~-----~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~ 170 (474)
.|+|+.++ ++.+|+|++++.+++++.... . + ......++.++++++++ ..+++++++||++|++.
T Consensus 3 ~yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 76 (384)
T 1eg5_A 3 VYFDNNAT------TRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINW 76 (384)
T ss_dssp EECBTTTC------CCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHH
T ss_pred EEEecCcc------CCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHH
Confidence 57776654 468999999999999863111 0 0 12445788888888886 45799999999999999
Q ss_pred HHHHhHh--hcCCcEEEEEeCCCCCCchhHH--HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCC
Q 011959 171 VLRLARA--FTGRERIIKFEGCYHGHADPFL--VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (474)
Q Consensus 171 al~~ar~--~~~~~~ii~~~~~yhg~~~~~~--~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (474)
+++.++. ..++++|++.+++||+...... ...|..+..++... .+ ..|+++|++.+++ +
T Consensus 77 ~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~i~~---~ 139 (384)
T 1eg5_A 77 ILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS-RG-------------VVKLEELEKLVDE---D 139 (384)
T ss_dssp HHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT-TS-------------CBCHHHHHHHCCT---T
T ss_pred HHHhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCC-CC-------------ccCHHHHHHHhCC---C
Confidence 9996542 1456889999989988654442 33344332221110 01 1289999998863 6
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhC--CEEEEeccccCc-ccCCCccccccCCCCceee--hhhhcCC-Cc
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG--ALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT--LGKIIGG-GL 320 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g--~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t--~sK~l~~-G~ 320 (474)
+++|+++++++++|.+.+ +++|.++|++|| ++||+||+|+ | .. ..... ...+|+++ ++|.++. |
T Consensus 140 ~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~--~~~~~--~~~~di~~~s~sK~~g~~G- 209 (384)
T 1eg5_A 140 TFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKI--PFSLE--KLEVDYASFSAHKFHGPKG- 209 (384)
T ss_dssp EEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTS--CCCCT--TTCCSEEEEEGGGGTSCTT-
T ss_pred CeEEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCc--ccCch--hcCCCEEEecHHHhcCCCc-
Confidence 889999999999999999 899999999999 9999999996 4 21 11112 22467764 5698873 5
Q ss_pred ceEEEEecHHH--HHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeE
Q 011959 321 PVGAYGGRRDI--MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (474)
Q Consensus 321 ~iG~~~~~~~i--~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (474)
+|++++++++ ...+..........+++.|+++++++.++|+.+.+ ++..++++++.+++.+.|++. ++...
T Consensus 210 -~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~ 284 (384)
T 1eg5_A 210 -VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNL----GAHII 284 (384)
T ss_dssp -CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT----TCEEC
T ss_pred -eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC----CeEEe
Confidence 7999999876 22221100001124567889999999999987543 456677777777777777652 22211
Q ss_pred Ee---eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----------------------CcceE
Q 011959 397 GG---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGF 450 (474)
Q Consensus 397 v~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~~~ 450 (474)
.. ..+.++.+.+... + ...+.+.|.++||.+.++. ...+|
T Consensus 285 ~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iR 350 (384)
T 1eg5_A 285 TPLEISLPNTLSVSFPNI-----------R---GSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIR 350 (384)
T ss_dssp SCTTSBCTTEEEEECTTC-----------C---HHHHHHHHHHTTEECBC------------CHHHHTTCCHHHHHHEEE
T ss_pred CCcccCCCCEEEEEeCCC-----------C---HHHHHHHHhhCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEE
Confidence 11 1244555554210 1 2567888899999998742 13578
Q ss_pred EecC--CcHHHHHHHHHHHHHHHhhC
Q 011959 451 TSLA--HSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 451 ~~~~--~t~e~i~~~l~~l~~~~~~~ 474 (474)
+++. +|++++++++++|+++++++
T Consensus 351 i~~~~~~~~~~i~~~~~~l~~~~~~~ 376 (384)
T 1eg5_A 351 ISLCKYNTEEEVDYFLKKIEEILSFL 376 (384)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8766 79999999999999998753
No 125
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.94 E-value=2.3e-26 Score=229.85 Aligned_cols=324 Identities=15% Similarity=0.127 Sum_probs=222.5
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCC-CCC-eEEEeCCHHHHHHHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRL 174 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~-~~~-~v~~~~sGseA~~~al~~ 174 (474)
++.|+|..+. ++.+|++++++.+++.. .++. ..+...+++++++++++ ..+ ++++++||++|++.+++.
T Consensus 33 ~~~~l~~~~~------~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~ 104 (393)
T 1vjo_A 33 PSRLLLGPGP------SNAHPSVLQAMNVSPVG--HLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIAN 104 (393)
T ss_dssp CCCEECSSSC------CCCCHHHHHHHSSCCCC--TTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHH
T ss_pred ccceeccCCC------CCCCHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHh
Confidence 4567774432 45789999998876643 2221 23567889999999886 456 899999999999999996
Q ss_pred hHhhcCCcEEEEEeCCCCCCc-hhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEc
Q 011959 175 ARAFTGRERIIKFEGCYHGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253 (474)
Q Consensus 175 ar~~~~~~~ii~~~~~yhg~~-~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~e 253 (474)
+ ..++++|++.+++||+.. ...+...|..+..++... .+ ..|+++|++.++++ ++++|+++
T Consensus 105 ~--~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~--~~~~v~~~ 166 (393)
T 1vjo_A 105 A--VEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPW-GE-------------VFSLEELRTALETH--RPAILALV 166 (393)
T ss_dssp H--CCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TC-------------CCCHHHHHHHHHHH--CCSEEEEE
T ss_pred c--cCCCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCC-CC-------------CCCHHHHHHHHhhC--CceEEEEe
Confidence 3 455678999999998821 122223343222211111 00 13899999999752 46788899
Q ss_pred cccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceee--hhhhcCCCcceEEEEecHH
Q 011959 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRD 330 (474)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~~~ 330 (474)
+++|++|.+.+ +++|.++|++||++||+||+|+ + .. .. ......+|+++ ++|+++++.++|+++++++
T Consensus 167 ~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~--~~--~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~ 237 (393)
T 1vjo_A 167 HAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGV--PI--FLDAWGVDLAYSCSQKGLGCSPGASPFTMSSR 237 (393)
T ss_dssp SEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTS--CC--CTTTTTCSEEECCSSSTTCSCSSCEEEEECHH
T ss_pred ccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCc--CC--cccccCccEEEEcCcccccCCCceEEEEECHH
Confidence 99999999988 8889999999999999999997 4 21 11 12234568775 5699986559999999999
Q ss_pred HHHhhcCC----CCccc------------ccCC-CCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 331 IMEMVAPA----GPMYQ------------AGTL-SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 331 i~~~~~~~----~~~~~------------~~t~-~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
+++.+... ...+. ..++ +.|+++++++.++|+.+.+ ++..++++++.+++.+.|+++ .
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g 315 (393)
T 1vjo_A 238 AIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI--G 315 (393)
T ss_dssp HHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc--C
Confidence 98887421 11111 2234 6788999999999987643 457778888888888888775 2
Q ss_pred cCCeeEEee--eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC----CcceEEe---cCCcHHHH
Q 011959 391 AGHAICGGY--ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTS---LAHSSDDI 460 (474)
Q Consensus 391 ~~~~~~v~~--~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~~~~---~~~t~e~i 460 (474)
..+... .+ .+.++++.+... ....++.+.|.++ ||.+.++. ...+|++ +..+++++
T Consensus 316 ~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i 381 (393)
T 1vjo_A 316 LSLHVE-KEYRLPTLTTVCIPDG-------------VDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESV 381 (393)
T ss_dssp CCBSSC-GGGBCSSEEEEECCTT-------------CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHH
T ss_pred CcccCC-ccccCCcEEEEEcCCC-------------CCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHH
Confidence 222110 11 234555555211 0125688889888 99998764 3467887 44678889
Q ss_pred HHHHHHHHHHHh
Q 011959 461 QHTITAAEKVLR 472 (474)
Q Consensus 461 ~~~l~~l~~~~~ 472 (474)
++++++|+++++
T Consensus 382 ~~~~~~l~~~l~ 393 (393)
T 1vjo_A 382 DQLIPALEQVLR 393 (393)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999998863
No 126
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.94 E-value=8.6e-27 Score=232.61 Aligned_cols=317 Identities=12% Similarity=0.054 Sum_probs=213.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CC-CeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCC
Q 011959 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SI-EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 193 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~-~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg 193 (474)
.+|+|++++.+++... .+....+...+++++++++++ .. +.+++++||++|++.+++.. ..++++|++..++||+
T Consensus 34 ~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~--~~~gd~vl~~~~~~~~ 110 (393)
T 3kgw_A 34 LAPRVLAAGSLRMIGH-MQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL--LEPGDSFLTGTNGIWG 110 (393)
T ss_dssp CCHHHHHHTTCCCCCT-TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH--CCTTCEEEEEESSHHH
T ss_pred CCHHHHHHhcccccCc-ccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc--CCCCCEEEEEeCCchh
Confidence 5788988887643211 111123556788999998886 23 36999999999999999963 5567889998888875
Q ss_pred Cc-hhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHH
Q 011959 194 HA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272 (474)
Q Consensus 194 ~~-~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l 272 (474)
.. .......|..+...+.... + ..|+++|++.++++ ++++|++++++|++|.+.+ +++|
T Consensus 111 ~~~~~~~~~~g~~~~~~~~~~~-~-------------~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i 170 (393)
T 3kgw_A 111 MRAAEIADRIGARVHQMIKKPG-E-------------HYTLQEVEEGLAQH--KPVLLFLVHGESSTGVVQP----LDGF 170 (393)
T ss_dssp HHHHHHHHHTTCEEEEEECCTT-C-------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTTH
T ss_pred HHHHHHHHHcCCceEEEeCCCC-C-------------CCCHHHHHHHHhhC--CCcEEEEeccCCcchhhcc----HHHH
Confidence 33 2223334443322111110 0 12899999999853 5788899999999999998 8889
Q ss_pred HHHHHHhCCEEEEecccc-CcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCcc-------
Q 011959 273 RRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMY------- 342 (474)
Q Consensus 273 ~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~------- 342 (474)
+++|++||++||+||+|+ |. ..+..+.++ +|++ +++|+++++.++|++++++++++.+.......
T Consensus 171 ~~l~~~~~~~li~De~~~~g~---~~~~~~~~~--~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (393)
T 3kgw_A 171 GELCHRYQCLLLVDSVASLGG---VPIYMDQQG--IDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDI 245 (393)
T ss_dssp HHHHHHTTCEEEEECTTTTTT---SCCCTTTTT--CCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCH
T ss_pred HHHHHHcCCEEEEECCccccC---cccchhhcC--CCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecH
Confidence 999999999999999996 21 122223333 4655 56699987777999999999998886421100
Q ss_pred -------------cccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEE
Q 011959 343 -------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (474)
Q Consensus 343 -------------~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (474)
...+++.++.+++++.++++.+.+ +++.++++++++++.+.|+++....-........+.++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 325 (393)
T 3kgw_A 246 TYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITTV 325 (393)
T ss_dssp HHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEEE
T ss_pred HHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEEE
Confidence 112345678888888888887654 5567788888888888887752111000001123455556
Q ss_pred EEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC----CcceEEec-C--CcHHHHHHHHHHHHHHHhh
Q 011959 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL-A--HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~~~~~-~--~t~e~i~~~l~~l~~~~~~ 473 (474)
.+... ....++.+.|+++ ||++.++. ...+|+++ . .|++++++++++|++++++
T Consensus 326 ~~~~~-------------~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~ 387 (393)
T 3kgw_A 326 TVPAG-------------YNWRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQH 387 (393)
T ss_dssp ECCTT-------------BCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred eCCCC-------------CCHHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHh
Confidence 55321 1125788888888 99998753 34577775 3 5999999999999999875
No 127
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.94 E-value=1.4e-26 Score=235.74 Aligned_cols=333 Identities=11% Similarity=0.050 Sum_probs=203.7
Q ss_pred EEeccCChhhccCC-CCCHHHHHHHHHH---HH----hcC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEEE--eCC
Q 011959 101 YIDYVGSWGPAIIG-HADDQVLAALGET---MK----KGT-SFG---APCLLENVLAEMVISAVP---SIEMVRF--VNS 163 (474)
Q Consensus 101 ~iD~~~~~~~~~lG-~~~p~v~~a~~~~---~~----~~~-~~~---~~~~~~~~la~~l~~~~~---~~~~v~~--~~s 163 (474)
.|||..| .++. .++|.+.++++++ +. .+. .|. +..++++++++++..... ..++|++ |+|
T Consensus 51 ~i~l~~g---~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~g 127 (448)
T 3meb_A 51 KVNLGVG---AYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLS 127 (448)
T ss_dssp CEEESSC---CCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESH
T ss_pred eEEeecc---cccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCc
Confidence 5777777 5533 3444444444444 32 111 121 123455556655521110 1479999 999
Q ss_pred HHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHH---hcCCCCccCCCCCCC-CCCCCCCCceEEccCCCHHHHHHH
Q 011959 164 GTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSP-GVPKGATYETLTAPFNDVSALENL 239 (474)
Q Consensus 164 GseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~-g~~~~~~~~~~~~~~~d~~~le~~ 239 (474)
|++|++.++.+...+.+++.|++.+++|+++...+.. ..|..+..+++.... +. . -|+++|++.
T Consensus 128 gt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~---------~---~d~e~l~~~ 195 (448)
T 3meb_A 128 GTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGEL---------E---IDFSNTKKD 195 (448)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCS---------S---BCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCC---------C---cCHHHHHHH
Confidence 9999999766554566778899999998775443331 344433332221111 00 0 089999999
Q ss_pred HhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC---Ccccccc-CCCCc---eee
Q 011959 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQEYF-GVTPD---LTT 311 (474)
Q Consensus 240 l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~---~~~~~~~-g~~pd---i~t 311 (474)
+++.+++.+++++..++|++|.+.+.++ +++|.++|++||+++|+||+|.+| ..+. ......+ +..++ +.+
T Consensus 196 l~~~~~~~~~v~~~~p~NPtG~~~~~~~-l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 274 (448)
T 3meb_A 196 IQSAPEKSIFLFHACAHNPSGIDFTEAQ-WKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQS 274 (448)
T ss_dssp HHHSCTTCEEEEESSSCTTTCCCCCHHH-HHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEE
T ss_pred HHhCCCCcEEEEeCCCCCCCCcCCCHHH-HHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEec
Confidence 9865445677777777888998876555 999999999999999999999988 4331 1122211 23345 347
Q ss_pred hhhhcC-CCcceEEE--Ee--------c-H----HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc-------C-C
Q 011959 312 LGKIIG-GGLPVGAY--GG--------R-R----DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK-------E-P 367 (474)
Q Consensus 312 ~sK~l~-~G~~iG~~--~~--------~-~----~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~-------~-~ 367 (474)
|||.++ .|+|+||+ ++ + + ++++.+. ......+.+.+.+++.++.++|+... . +
T Consensus 275 ~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~ 351 (448)
T 3meb_A 275 FSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMT---LQIRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVK 351 (448)
T ss_dssp CTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHH---HHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred ccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHH---HHHhcccCCccHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999 79999998 65 3 4 5555554 22233455667788888777764321 1 3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhc-----CCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHH-HHCCeEe
Q 011959 368 GTYEYLNKITGELTQGIIDAGKKA-----GHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYF 441 (474)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~-----~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v 441 (474)
...++++++++++.+.|+++.... .+....+..|.+.+..+. .++...+ .++||++
T Consensus 352 ~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------------~~~~~~ll~~~gV~v 413 (448)
T 3meb_A 352 EMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLT------------------PEHVDYLKEKWSIYL 413 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCC------------------HHHHHHHHHHHCEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCC------------------HHHHHHHHHhCCEEE
Confidence 455666666777777766541000 011111223444333221 2344555 5679999
Q ss_pred cccCCcceEEecCC-cHHHHHHHHHHHHHHHhh
Q 011959 442 APSQFEAGFTSLAH-SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 442 ~~~~~~~~~~~~~~-t~e~i~~~l~~l~~~~~~ 473 (474)
.++. .|+++.. ++++|++++++|++++++
T Consensus 414 ~~G~---gRis~a~~~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 414 VKAG---GRMSMCGLTESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp CSGG---GEEEGGGCCTTTHHHHHHHHHHHHHH
T ss_pred eCCC---cEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 9854 3887665 888999999999999875
No 128
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.94 E-value=4.3e-27 Score=236.62 Aligned_cols=332 Identities=12% Similarity=0.101 Sum_probs=210.8
Q ss_pred CEEEeccCChhhccCC-CCCHHHHHHHHHHHHhcC-CCC---CCCHHHHHHHHHHHhhCC---CCCeEE--EeCCHHHHH
Q 011959 99 NEYIDYVGSWGPAIIG-HADDQVLAALGETMKKGT-SFG---APCLLENVLAEMVISAVP---SIEMVR--FVNSGTEAC 168 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG-~~~p~v~~a~~~~~~~~~-~~~---~~~~~~~~la~~l~~~~~---~~~~v~--~~~sGseA~ 168 (474)
..+|||..| ++++ .++|.+.+++.++..... .|+ +..++++++++++..... ..+++. .+++|++|+
T Consensus 41 ~~~i~l~~g---~~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~ 117 (409)
T 4eu1_A 41 KRKVNLSIG---VYRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGAL 117 (409)
T ss_dssp SSCEECCCS---SCCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHH
T ss_pred cCceeeeee---EEECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHH
Confidence 357888888 6644 367888888888733222 222 124556666666532221 146774 499999999
Q ss_pred HHHHHHhHhhcCC-cEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 169 MGVLRLARAFTGR-ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 169 ~~al~~ar~~~~~-~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
+.+..+++.+.++ +.|++.+++|+++.. .+...|..+..++.....+. ..|+++|++.++++++..
T Consensus 118 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~-~~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~l~~~~~~~ 184 (409)
T 4eu1_A 118 RIGGDLLNRFVANCNRIYGPDVGYPNHES-IFAKAGMELTPYSYYDPATK------------GLNLAGMLECLDKAPEGS 184 (409)
T ss_dssp HHHHHHGGGTSSSCCEEEEESSCCTHHHH-HHHHTTCEEEEECCEETTTT------------EECHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCcHhHHH-HHHHcCCeEEEEEeecCcCC------------cCcHHHHHHHHHhCCCCc
Confidence 9998877777665 888888888877543 33334443222111000000 018999999997654456
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC---Ccc-ccccCCCCcee---ehhhhcC-C
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGA-QEYFGVTPDLT---TLGKIIG-G 318 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~---~~~-~~~~g~~pdi~---t~sK~l~-~ 318 (474)
++++++.++|++|.+.+.++ +++|.++|++||++||+||+|.+| ..+. ... ....+..++++ +|||.++ .
T Consensus 185 ~~i~~~~p~NPtG~~~~~~~-l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 263 (409)
T 4eu1_A 185 VILVHACAHNPTGVDPTHDD-WRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLY 263 (409)
T ss_dssp EEEEESSSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCG
T ss_pred EEEEECCCCCCCCCCCCHHH-HHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCc
Confidence 77776666788898876555 999999999999999999999988 4431 122 22234555654 7999999 7
Q ss_pred CcceEEE---EecHH----HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHh-------cC-CCHHHHHHHHHHHHHHH
Q 011959 319 GLPVGAY---GGRRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-------KE-PGTYEYLNKITGELTQG 383 (474)
Q Consensus 319 G~~iG~~---~~~~~----i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~-------~~-~~~~~~~~~~~~~l~~~ 383 (474)
|+|+||+ +++++ +++.+. ......+++.+++++.++.++|+.. +. ++.+++++++.+++.+.
T Consensus 264 G~riG~~~~v~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 340 (409)
T 4eu1_A 264 GHRCGALHISTASAEEAKRLVSQLA---LLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSE 340 (409)
T ss_dssp GGCCEEEEEECSSHHHHHHHHHHHH---HHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEEeCCHHHHHHHHHHHH---HHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 56777 555554 2223345667788998888888732 11 44566677777777777
Q ss_pred HHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccCCcceEEec-CCcHHHHH
Q 011959 384 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQFEAGFTSL-AHSSDDIQ 461 (474)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~~~~-~~t~e~i~ 461 (474)
|++......+....+..|.++++.+ + .++...++ ++||++.|++ |+++ .+++++++
T Consensus 341 L~~~g~~~~~~~~~~~~~~~~~~~~-------------~-----~~~~~~ll~~~gv~v~p~~----Ri~~~~~~~~~i~ 398 (409)
T 4eu1_A 341 LKACGSVHDWSHIERQVGMMAYTGL-------------T-----REQVELLRSEYHIYMTLNG----RAAVSGLNSTNVE 398 (409)
T ss_dssp HHHTTCCSCCHHHHHSCSSEEECCC-------------C-----HHHHHHHHHHHCEECCTTC----EEEGGGCCTTTHH
T ss_pred HHhcCCCCCcceecCCceEEEEeCC-------------C-----HHHHHHHHHcCCEEEcCCC----EEEEEecCHhhHH
Confidence 7664200001111122333333221 0 23445555 6799999864 5653 46888899
Q ss_pred HHHHHHHHHHh
Q 011959 462 HTITAAEKVLR 472 (474)
Q Consensus 462 ~~l~~l~~~~~ 472 (474)
+++++|+++++
T Consensus 399 ~~~~~l~~~l~ 409 (409)
T 4eu1_A 399 YVSQAIHNVTK 409 (409)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998863
No 129
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.94 E-value=8e-26 Score=225.76 Aligned_cols=327 Identities=14% Similarity=0.080 Sum_probs=220.3
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLAR 176 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar 176 (474)
..|+|..+ .++.+|.+++++.+++.. ..+ .......++.++++++++ ..+++++++||++|++.+++.+
T Consensus 9 ~~yl~~~~------~~~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~- 79 (392)
T 2z9v_A 9 PVITLTAG------PVNAYPEVLRGLGRTVLY--DYDPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASL- 79 (392)
T ss_dssp CSEECSSS------CCCCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHH-
T ss_pred cceeecCC------CcCCCHHHHHHHhccccc--cccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHh-
Confidence 35777543 235789999998877643 121 123456788999999886 4579999999999999999963
Q ss_pred hhcCCcEEEEEeCCCCCCchh-HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011959 177 AFTGRERIIKFEGCYHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~-~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
..++++|++.+++||+.... .....|..+..++... .+ ..|+++|++.+++. +++++|+++++
T Consensus 80 -~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~-~~~~~v~~~~~ 143 (392)
T 2z9v_A 80 -ISPDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPY-NE-------------AIDPQAVADMLKAH-PEITVVSVCHH 143 (392)
T ss_dssp -CCTTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCT-TS-------------CCCHHHHHHHHHHC-TTCCEEEEESE
T ss_pred -cCCCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCC-CC-------------CCCHHHHHHHHhcC-CCCcEEEEecc
Confidence 45567899999999886311 1122344332211110 01 12899999999643 25788999999
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHH
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIME 333 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~ 333 (474)
+|++|.+.+ +++|.++|++||++||+||+|+.-.. ......+ .+|++ +++|+++++.++|++++++++++
T Consensus 144 ~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~g~~--~~~~~~~--~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~ 215 (392)
T 2z9v_A 144 DTPSGTINP----IDAIGALVSAHGAYLIVDAVSSFGGM--KTHPEDC--KADIYVTGPNKCLGAPPGLTMMGVSERAWA 215 (392)
T ss_dssp EGGGTEECC----HHHHHHHHHHTTCEEEEECTTTBTTB--SCCGGGG--TCSEEEECSSSTTCCCSCCEEEEECHHHHH
T ss_pred CCCCceecc----HHHHHHHHHHcCCeEEEEcccccCCc--ccccccc--cceEEEecCcccccCCCceeEEEECHHHHH
Confidence 999999998 99999999999999999999962111 1112222 35665 57898886566799999999988
Q ss_pred hhcCCC--C--c-------------ccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011959 334 MVAPAG--P--M-------------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGH 393 (474)
Q Consensus 334 ~~~~~~--~--~-------------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~ 393 (474)
.+.... . . ......+.++.+++++.++++.+.+ ++..++++++.+++++.|+++ ...+
T Consensus 216 ~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~~~ 293 (392)
T 2z9v_A 216 KMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM--GLSV 293 (392)
T ss_dssp HHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCB
T ss_pred HhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc--CCee
Confidence 775311 0 0 0112334567777777788877644 346777788888888888764 2222
Q ss_pred ee-E-EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC----CcceEEec---CCcHHHHHHH
Q 011959 394 AI-C-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSSDDIQHT 463 (474)
Q Consensus 394 ~~-~-v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~~~~~---~~t~e~i~~~ 463 (474)
.. . ....+.++++.+... ....++.+.|.++ ||.+.++. ...+|+++ .+|+++++++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~ 360 (392)
T 2z9v_A 294 WAASDSIASPTTTAVRTPDG-------------VDEKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAA 360 (392)
T ss_dssp SSSSGGGBCTTEEEEECCTT-------------CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHH
T ss_pred ccCCccccCCceEEEECCCC-------------CCHHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHH
Confidence 11 0 011456667765311 0125688888887 99998763 34678874 5799999999
Q ss_pred HHHHHHHHhh
Q 011959 464 ITAAEKVLRQ 473 (474)
Q Consensus 464 l~~l~~~~~~ 473 (474)
+++|++++++
T Consensus 361 ~~~l~~~~~~ 370 (392)
T 2z9v_A 361 LTALGGAMNA 370 (392)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 130
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.94 E-value=3.2e-25 Score=218.90 Aligned_cols=329 Identities=15% Similarity=0.128 Sum_probs=219.1
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCCC---CCeEEEeCCHHHHHHHHHHHhH
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVPS---IEMVRFVNSGTEACMGVLRLAR 176 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~~---~~~v~~~~sGseA~~~al~~ar 176 (474)
++||..| +++ .+|+|++++.+++. ..++. ......++.++++++++. .+++++++||++|++.+++.+
T Consensus 5 ~~~~~~g----p~~-~~~~v~~a~~~~~~--~~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~- 76 (366)
T 1m32_A 5 YLLLTPG----PLT-TSRTVKEAMLFDSC--TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA- 76 (366)
T ss_dssp CEECSSS----SCC-CCHHHHHTTCCCCC--TTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS-
T ss_pred cccccCC----CcC-CCHHHHHHHhhhhc--CCCHHHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHh-
Confidence 5676666 333 78999999887531 11110 114456777777777752 247999999999999999964
Q ss_pred hhcCCcEEEEEeCCCCCCc-hhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011959 177 AFTGRERIIKFEGCYHGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~-~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
..++++||++++.||+.. .......|..+...+... . ...|+++|++.+++++ ++++|++..+
T Consensus 77 -~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~-------------~~~d~~~l~~~l~~~~-~~~~v~~~~~ 140 (366)
T 1m32_A 77 -LGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE-V-------------ARPDVQAIDAILNADP-TISHIAMVHS 140 (366)
T ss_dssp -CCTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCT-T-------------SCCCHHHHHHHHHHCT-TCCEEEEESE
T ss_pred -cCCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCC-C-------------CCCCHHHHHHHHhcCC-CeEEEEEecc
Confidence 235567888888888753 233333454332221110 0 1238999999998642 4567777777
Q ss_pred cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHH
Q 011959 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIME 333 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~ 333 (474)
++++|.+.+ +++|.++|++||++||+||+|+..... ..... ..+|++ +++|+++++.++|++++++++++
T Consensus 141 ~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~~~--~~~~~--~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~ 212 (366)
T 1m32_A 141 ETTTGMLNP----IDEVGALAHRYGKTYIVDAMSSFGGIP--MDIAA--LHIDYLISSANKCIQGVPGFAFVIAREQKLA 212 (366)
T ss_dssp ETTTTEECC----HHHHHHHHHHHTCEEEEECTTTTTTSC--CCTTT--TTCSEEEEESSSTTCCCSSEEEEEEEHHHHT
T ss_pred cCCcceecC----HHHHHHHHHHcCCEEEEECCccccCcC--ccccc--cCccEEEecCcccccCCCceEEEEECHHHHH
Confidence 778999998 999999999999999999999632211 11111 236766 68899976667899999999988
Q ss_pred hhcCCCCccc---------------ccCCCCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCe
Q 011959 334 MVAPAGPMYQ---------------AGTLSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHA 394 (474)
Q Consensus 334 ~~~~~~~~~~---------------~~t~~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (474)
.+......+. ...++.|+++++++.++|+.+.+. ...++++++.+++.+.|+++ ...+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~--~~~~~ 290 (366)
T 1m32_A 213 ACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL--GFNTL 290 (366)
T ss_dssp TCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT--TCCBS
T ss_pred hhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC--CCeec
Confidence 7764211110 013577888888888999876543 36777788888888888765 22221
Q ss_pred eEE-eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC---CcceEEecC--CcHHHHHHHHHHHH
Q 011959 395 ICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---FEAGFTSLA--HSSDDIQHTITAAE 468 (474)
Q Consensus 395 ~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---~~~~~~~~~--~t~e~i~~~l~~l~ 468 (474)
... ...+.++++.+.... .....++.+.|.++||++.++. ...+|+++. ++++++++++++|+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 359 (366)
T 1m32_A 291 LDDELHSPIITAFYSPEDP-----------QYRFSEFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIR 359 (366)
T ss_dssp SCGGGBCSSEEEEECCCCT-----------TCCHHHHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHH
T ss_pred cCchhcCceEEEEEcCccC-----------CCCHHHHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHH
Confidence 110 124557777764200 0012578889999999998763 346777644 58999999999999
Q ss_pred HHHhhC
Q 011959 469 KVLRQI 474 (474)
Q Consensus 469 ~~~~~~ 474 (474)
++++++
T Consensus 360 ~~~~~~ 365 (366)
T 1m32_A 360 TAMYWT 365 (366)
T ss_dssp HHCTTC
T ss_pred HHHHhc
Confidence 987653
No 131
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.94 E-value=4.3e-25 Score=217.33 Aligned_cols=321 Identities=17% Similarity=0.087 Sum_probs=199.0
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhh
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~ 178 (474)
..+|||.++ +.++.+|+|++++.+++........+.+...+++++++++++..+.+++++||++|++.+++. +
T Consensus 7 ~~~id~~~~----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~---~ 79 (356)
T 1v72_A 7 PPALGFSSD----NIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSA---M 79 (356)
T ss_dssp CCCCBCSCG----GGCCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHT---S
T ss_pred CceEeeccC----CccCCCHHHHHHHHhhccCcccccccchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHH---h
Confidence 468898875 346789999999998863211112246788999999999886333589999999999999995 3
Q ss_pred cCCcEEEEEeCCCCCCchhH--HHhc--CCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHH-HHhcC----CCCeEE
Q 011959 179 TGRERIIKFEGCYHGHADPF--LVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN-LFENN----KGEIAA 249 (474)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~--~~~~--g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~-~l~~~----~~~~a~ 249 (474)
.++++.|+....+|+..... +... |..+..++.. .+ .-|+++|++ .+++. ++++++
T Consensus 80 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~-------------~~d~~~l~~~~i~~~~~~~~~~~~~ 144 (356)
T 1v72_A 80 TPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP--AA-------------KLDIVRLRERTREKVGDVHTTQPAC 144 (356)
T ss_dssp CCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG--GG-------------CCCHHHHHHHTTSSTTCTTSCEEEE
T ss_pred cCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC--CC-------------eEcHHHHHHHhhhcchhhccCCceE
Confidence 34444444445555433322 3333 4432221110 00 118999999 88742 236889
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-c--cCCCccccccC--CCCcee--ehhhhcCCCcce
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R--LAYGGAQEYFG--VTPDLT--TLGKIIGGGLPV 322 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r--~g~~~~~~~~g--~~pdi~--t~sK~l~~G~~i 322 (474)
|++++++ ++|.+. +.+++++|+++|++||++||+||+|..+ . .+.. ...++ ...|++ +++|+ |.|+
T Consensus 145 v~~~~~~-~tG~~~-~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~---g~~~ 217 (356)
T 1v72_A 145 VSITQAT-EVGSIY-TLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCS--PAEMTWKAGVDALSFGATKN---GVLA 217 (356)
T ss_dssp EEEESSC-TTSCCC-CHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC--TTTTTGGGTCCEEEECCGGG---TCSS
T ss_pred EEEEcCC-CCCccC-CHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCC--HHHhhhhhcCCEEEEecccC---CCcC
Confidence 9999865 588765 4566999999999999999999999643 1 1211 11121 134554 58898 3366
Q ss_pred E--EEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHhhhcCCeeEE
Q 011959 323 G--AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP---GTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (474)
Q Consensus 323 G--~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~---~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (474)
| ++++++++++.+.... ...++... .++.++.++++.++++ ++.++++++.+++++.|+++ .++....
T Consensus 218 G~g~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~---~g~~~~~ 290 (356)
T 1v72_A 218 AEAIVLFNTSLATEMSYRR--KRAGHLSS--KMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGL---GGVEVLG 290 (356)
T ss_dssp CEEEEESSGGGHHHHHHHH--HHTTCCCS--STHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTTC---TTEEEES
T ss_pred ccEEEEECHHHHhhHHHHh--hccCchhh--hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhC---CCcEEcc
Confidence 6 7778999887765210 11122111 1233344455555542 23445555566666555432 1222222
Q ss_pred eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--CcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 398 GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 398 ~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+..+.++++.+. .++.+.|.++||.+.++. ...+|++ ..+|++++++++++|++++++
T Consensus 291 ~~~~~~~~~~~~------------------~~~~~~l~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 291 GTEANILFCRLD------------------SAMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp CCCSSEEEEEEC------------------HHHHHHHHHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred CCCccEEEEEcC------------------HHHHHHHHhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 344556665541 257888899999998654 2457775 567999999999999987654
No 132
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.94 E-value=5e-26 Score=226.35 Aligned_cols=314 Identities=14% Similarity=0.108 Sum_probs=212.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CC--CeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCC
Q 011959 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 192 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~--~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yh 192 (474)
.+|++++++.+++.... .....+...++.++++++++ .. +++++++||++|++ +++. ...++++|++.+++||
T Consensus 13 ~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~--~~~~gd~vi~~~~~~~ 88 (384)
T 3zrp_A 13 IKEDVLVAGLENNVGFT-SKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTS--LLKPNDKILVVSNGVF 88 (384)
T ss_dssp CCHHHHHHTTCCSCCTT-SHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGG--GCCTTCEEEEECSSHH
T ss_pred CCHHHHHHhhccccccc-cHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHh--hcCCCCEEEEecCCcc
Confidence 47889888877653211 11124567788888988886 34 78999999999999 8874 3456788999999998
Q ss_pred CCchhHH-HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHH
Q 011959 193 GHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 271 (474)
Q Consensus 193 g~~~~~~-~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~ 271 (474)
+.....+ ...|..+..++.... + ..|+++|++.++++ ++++|++++++|++|.+.+ +++
T Consensus 89 ~~~~~~~~~~~g~~~~~v~~~~~-~-------------~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~ 148 (384)
T 3zrp_A 89 GDRWEQIFKRYPVNVKVLRPSPG-D-------------YVKPGEVEEEVRKS--EYKLVALTHVETSTGVREP----VKD 148 (384)
T ss_dssp HHHHHHHHTTSSCEEEEECCSTT-C-------------CCCHHHHHHHHHHS--CEEEEEEESEETTTTEECC----HHH
T ss_pred hHHHHHHHHHcCCcEEEecCCCC-C-------------CCCHHHHHHHHHhC--CCcEEEEeCCCCCCceECc----HHH
Confidence 8432222 222332222111110 0 01899999999863 5889999999999999998 999
Q ss_pred HHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhh-cCCC---------
Q 011959 272 IRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMV-APAG--------- 339 (474)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~-~~~~--------- 339 (474)
|.++|++||++||+||+|+.... ......+ .+|++ +++|+++++.++|++++++++++.+ .+..
T Consensus 149 i~~l~~~~~~~li~D~a~~~~~~--~~~~~~~--~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (384)
T 3zrp_A 149 VINKIRKYVELIVVDGVSSVGAE--EVKAEEW--NVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLR 224 (384)
T ss_dssp HHHHHGGGEEEEEEECTTTTTTS--CCCTTTT--TCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHH
T ss_pred HHHHHHhcCCEEEEECcccccCc--ccccccc--CCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHH
Confidence 99999999999999999962211 1111222 35665 5779998777799999999998877 2100
Q ss_pred Ccc---------cccCC-CCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeE--EeeeceeE
Q 011959 340 PMY---------QAGTL-SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAIC--GGYISGMF 404 (474)
Q Consensus 340 ~~~---------~~~t~-~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--v~~~g~~~ 404 (474)
... ....+ +.+...+++..++++.+.+ +++.++++++.+++.+.|+++ ...+... ....+.++
T Consensus 225 ~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~ 302 (384)
T 3zrp_A 225 NWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEAL--GLEIVARRPESYSNTVT 302 (384)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCCBSCSSGGGBCSSEE
T ss_pred HHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHC--CCeEccCcccccCccEE
Confidence 000 11122 4566677777788877654 467777888888888888775 2221111 11235566
Q ss_pred EEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC---cceEEec--CCcHHHHHHHHHHHHHHHhh
Q 011959 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAGFTSL--AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~~~~~~~--~~t~e~i~~~l~~l~~~~~~ 473 (474)
++.+... ...++.+.|.++||.+.++.. ..+|+++ .+|++++++++++|++++++
T Consensus 303 ~~~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~ 362 (384)
T 3zrp_A 303 GVILKVA--------------DPQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRK 362 (384)
T ss_dssp EEECSSS--------------CHHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCC--------------CHHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHH
Confidence 6665321 125788999999999987652 4577764 47999999999999998864
No 133
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.94 E-value=1e-25 Score=230.46 Aligned_cols=349 Identities=13% Similarity=0.051 Sum_probs=212.0
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 176 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar 176 (474)
.|+.||||.+++++ +.|.+++.+++..+.....+.....+|++++++++ +.++++|++||++|++.+++.++
T Consensus 41 ~g~~ylD~~~~~~~-------~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~-~~~~v~~t~ggt~A~~~al~~~~ 112 (467)
T 1ax4_A 41 SSAVYIDLLTDSGT-------NAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKELF-NYDYIIPAHQGRGAENILFPVLL 112 (467)
T ss_dssp GGGCSEECSCSSSC-------CCEEHHHHHHHHTCCCCSSSCHHHHHHHHHHHHHH-CCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCceeeecccCcCC-------HHHHHHHHHHHhhcccccccCccHHHHHHHHHHHc-CCCcEEEcCCcHHHHHHHHHHHH
Confidence 36789999887543 78888888887765432234566778888888888 56899999999999999999875
Q ss_pred hh---cCCcE---EEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC---CCHHHHHHHHhcCC-CC
Q 011959 177 AF---TGRER---IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF---NDVSALENLFENNK-GE 246 (474)
Q Consensus 177 ~~---~~~~~---ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~---~d~~~le~~l~~~~-~~ 246 (474)
.+ ++ +. ||+. ..+|+.+...+...|..+....... .++. ....++ .|+++|++++++++ ++
T Consensus 113 ~~~~~~G-d~~~~viv~-~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~-----~~~~~~~~~~d~~~le~~i~~~~~~~ 183 (467)
T 1ax4_A 113 KYKQKEG-KAKNPVFIS-NFHFDTTAAHVELNGCKAINIVTEK--AFDS-----ETYDDWKGDFDIKKLKENIAQHGADN 183 (467)
T ss_dssp HHHHHTT-CCSSCEEEE-SSCCHHHHHHHHHTTCEEEECBCGG--GGCT-----TSCCTTTTCBCHHHHHHHHHHHCGGG
T ss_pred HhhccCC-CccceEEEe-ccccchhhHHHhccCCceecccccc--cccc-----cccCCcccccCHHHHHHHHHhcCCCC
Confidence 43 44 33 6655 3333544555555554332211100 0000 000112 28999999997532 36
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC--cc------cCCCc-cccccC----CCCcee--e
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG--FR------LAYGG-AQEYFG----VTPDLT--T 311 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~r------~g~~~-~~~~~g----~~pdi~--t 311 (474)
+++|++++++|++|...++.+++++|+++|++||++||+||++.. .. .+..+ ....++ ..+|++ +
T Consensus 184 ~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s 263 (467)
T 1ax4_A 184 IVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMS 263 (467)
T ss_dssp EEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEE
T ss_pred eeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEe
Confidence 899999999998855566677799999999999999999998742 10 01110 000000 124554 6
Q ss_pred hhhhcCCCcceE-EEEec-H-HHHHhhcCCCCc-ccccCCCCChHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 011959 312 LGKIIGGGLPVG-AYGGR-R-DIMEMVAPAGPM-YQAGTLSGNPLAMTAGI-HTLKRLKEPGTYEYLNKITGELTQGIID 386 (474)
Q Consensus 312 ~sK~l~~G~~iG-~~~~~-~-~i~~~~~~~~~~-~~~~t~~~~~~~~aaa~-aal~~~~~~~~~~~~~~~~~~l~~~L~~ 386 (474)
++|+++ +|+| +++++ + ++++.+...... ....++++++..+.++. ++|+.+.+++..++..++++++++.|++
T Consensus 264 ~sK~~g--~~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~ 341 (467)
T 1ax4_A 264 AKKDPL--LNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLRE 341 (467)
T ss_dssp TTSTTC--CSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCC--CCcceEEEeCCHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 788775 4655 45566 6 787766421111 11224555555444333 3566554334566666778888888876
Q ss_pred HhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHH-HHCCeEeccc-----------C------Ccc
Q 011959 387 AGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPS-----------Q------FEA 448 (474)
Q Consensus 387 ~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~-----------~------~~~ 448 (474)
. .+.+. .+..|.++++.+.. -..++. .......++.+.| .++||.+.+. + ...
T Consensus 342 ~--~~~~~--~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~ 412 (467)
T 1ax4_A 342 A--GIPIQ--YPTGGHAVFVDCKK-LVPQIP----GDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEF 412 (467)
T ss_dssp T--TCCBC--SSCCSSEEEEESTT-TCTTSC----GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCE
T ss_pred C--CCCcc--cCCCceEEEEehhh-hccccc----cCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccce
Confidence 2 23222 23345555655211 000000 0111235688888 7899999872 1 135
Q ss_pred eEEecC---CcHHHHHHHHHHHHHHHhh
Q 011959 449 GFTSLA---HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 449 ~~~~~~---~t~e~i~~~l~~l~~~~~~ 473 (474)
+|+++. +|++++++++++|++++++
T Consensus 413 iRls~~~~~~t~e~i~~~~~~l~~~~~~ 440 (467)
T 1ax4_A 413 MRLTIARRVYTNDHMDYIADALIGLKEK 440 (467)
T ss_dssp EEEECCTTSSCHHHHHHHHHHHHTTHHH
T ss_pred EEEecccccCCHHHHHHHHHHHHHHHHh
Confidence 677654 7999999999999987753
No 134
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.94 E-value=3.8e-26 Score=237.02 Aligned_cols=353 Identities=12% Similarity=0.027 Sum_probs=212.0
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHhh----CC--CCCeEEEeCCHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSF---GAPCLLENVLAEMVISA----VP--SIEMVRFVNSGTEAC 168 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~---~~~~~~~~~la~~l~~~----~~--~~~~v~~~~sGseA~ 168 (474)
|.+|++...+++.+..++.+|++++++.+++.....+ .+..+++.++++++.+. .+ ..+++++|+||++|+
T Consensus 98 g~~~~~~~i~l~~g~~~~~~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al 177 (533)
T 3f6t_A 98 EDKFLIDAVNYCHTELGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAI 177 (533)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHH
T ss_pred cccccHhheeccCCCCCcCCcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHH
Confidence 3355554445555666777899999988888653211 23457888899988766 22 147999999999999
Q ss_pred HHHHHHh--Hhhc-CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCC--CCCCCCCCCCceEEccCCCHHHHHHHHhcC
Q 011959 169 MGVLRLA--RAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENN 243 (474)
Q Consensus 169 ~~al~~a--r~~~-~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~--~~g~~~~~~~~~~~~~~~d~~~le~~l~~~ 243 (474)
..+++.. +.+. .++.|++.+++|+++...+. ..|..+...+... ... ..+ |+++|++.++
T Consensus 178 ~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~-~~g~~~~~v~~~~~~~~~---------~~~---d~~~l~~~l~-- 242 (533)
T 3f6t_A 178 VYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPE-LKDYELVEVDLHSYEKND---------WEI---EPNEIEKLKD-- 242 (533)
T ss_dssp HHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGG-GGGSEEEEECCCEETTTT---------SEE---CHHHHHHHSC--
T ss_pred HHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHH-HcCCeEEEEEecCCcccC---------CCC---CHHHHHHHhC--
Confidence 9999841 1133 45788888888887543332 2232222111110 000 000 7899999885
Q ss_pred CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH-HhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcC-CCc
Q 011959 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK-ENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIG-GGL 320 (474)
Q Consensus 244 ~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~-~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~-~G~ 320 (474)
+++++|+++.++|++|.+.+.++ +++|.++|+ +||++||+||+|.+| ...........+....+.||||.+| .|+
T Consensus 243 -~~~k~v~l~~p~NPtG~~~~~~~-l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~ 320 (533)
T 3f6t_A 243 -PSIKALIVVNPTNPTSKEFDTNA-LNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGW 320 (533)
T ss_dssp -TTEEEEEEESSCTTTCBCCCHHH-HHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGG
T ss_pred -CCCeEEEEeCCCCCCccccCHHH-HHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCccc
Confidence 36788887777788898876555 999999999 589999999999988 4322211111222344558999998 799
Q ss_pred ceEEEEecHH-----HHHhhcC-----------------------------CCCcccccCCCCChHHHHH----HHHHHH
Q 011959 321 PVGAYGGRRD-----IMEMVAP-----------------------------AGPMYQAGTLSGNPLAMTA----GIHTLK 362 (474)
Q Consensus 321 ~iG~~~~~~~-----i~~~~~~-----------------------------~~~~~~~~t~~~~~~~~aa----a~aal~ 362 (474)
|+||++++++ +++.+.+ ........+.+.+++.+.+ ++++|.
T Consensus 321 RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~ 400 (533)
T 3f6t_A 321 RLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLL 400 (533)
T ss_dssp CEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHh
Confidence 9999998876 4443210 0122234455667777766 344442
Q ss_pred ------HhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCC----CcCcccccccchHHHHHH
Q 011959 363 ------RLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGP----VYNFEDAKKSETTKFARF 430 (474)
Q Consensus 363 ------~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~ 430 (474)
...+ +...++++++.+.+.+.|. .++....+..|.++++.+.... ...+..... ......++
T Consensus 401 ~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-----~~~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~-~~~~~~~~ 474 (533)
T 3f6t_A 401 TSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-----APKDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLT-NNFEQVDF 474 (533)
T ss_dssp TCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-----CCCCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHH-HHCCHHHH
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHHhcC-----CCccccCCCceEEEEEehHhhhhhccchHHHHHhh-ccCCHHHH
Confidence 0100 2334444444555544442 3333223345566666553100 000000000 00011244
Q ss_pred HHHH-HHCCeEecccC-----CcceEEecC-CcHHHHHHHHHHHHHHHhh
Q 011959 431 YRGM-LEEGVYFAPSQ-----FEAGFTSLA-HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 431 ~~~l-~~~Gv~v~~~~-----~~~~~~~~~-~t~e~i~~~l~~l~~~~~~ 473 (474)
...+ .++||++.|+. .+.+|+++. ++++++++++++|.+++++
T Consensus 475 ~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~~~~e~i~~~i~~L~~~l~~ 524 (533)
T 3f6t_A 475 LLKLAEKNGVVLVDGVGFGAKPGELRVSQANLPTEDYALIGKQVLELLKE 524 (533)
T ss_dssp HHHHHHHTTSSSCTTEEECSSTTEEEEESSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEeCCcccCCCCCEEEEEEeeCCHHHHHHHHHHHHHHHHH
Confidence 4444 47899998863 346789887 5999999999999998865
No 135
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.94 E-value=1.2e-25 Score=223.11 Aligned_cols=316 Identities=12% Similarity=0.047 Sum_probs=205.2
Q ss_pred CCHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCC-CC--CeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCC
Q 011959 116 ADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SI--EMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 191 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~-~~--~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~y 191 (474)
.+|+|++++.+++.. .++ ...+...+++++++++++ .. +.+++++||++|++.+++.. ..++++||+.+++|
T Consensus 30 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~--~~~gd~vi~~~~~~ 105 (376)
T 3f0h_A 30 SSEEVRAIGAEQVPY--FRTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNC--FTKKDKVLVIDGGS 105 (376)
T ss_dssp CCHHHHHHHTSCCCC--CSSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHH--CCTTCCEEEEESSH
T ss_pred CcHHHHHHhcCCCCC--CCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhc--cCCCCeEEEEeCCh
Confidence 478888888775522 111 112556788888888875 22 34555899999999999953 35678899999888
Q ss_pred CCCchh-HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHH
Q 011959 192 HGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (474)
Q Consensus 192 hg~~~~-~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (474)
|+.... .....|..+..++.+.... .|+++|++.+. +++++|++++++|++|.+.+ ++
T Consensus 106 ~~~~~~~~~~~~g~~~~~v~~~~~~~--------------~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~----l~ 164 (376)
T 3f0h_A 106 FGHRFVQLCEIHEIPYVALKLEHGKK--------------LTKEKLYEYDN---QNFTGLLVNVDETSTAVLYD----TM 164 (376)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTCC--------------CCHHHHHTTTT---SCCCEEEEESEETTTTEECC----HH
T ss_pred hhHHHHHHHHHcCCceEEEeCCCCCC--------------CCHHHHHHhhc---cCceEEEEecccCCcceecC----HH
Confidence 884432 1222343322211111111 17899988664 36788999988899999998 99
Q ss_pred HHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCCC-cc------
Q 011959 271 AIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGP-MY------ 342 (474)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~-~~------ 342 (474)
+|+++|++||++||+||+|+.+ +. +..+.+++...+.+++|+++++.++|++++++++++.+..... .+
T Consensus 165 ~i~~l~~~~~~~li~D~~~~~~~~~---~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (376)
T 3f0h_A 165 MIGEFCKKNNMFFVCDCVSAFLADP---FNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKD 241 (376)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTSC---CCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHH
T ss_pred HHHHHHHHcCCEEEEEcCccccCcc---ccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHH
Confidence 9999999999999999999754 32 2334456555556788999866678999999999888764211 00
Q ss_pred -------cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe-eeceeEEEEEecCCCc
Q 011959 343 -------QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVY 414 (474)
Q Consensus 343 -------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~~ 414 (474)
....++.+..+++++.++++.+.+.+..+++.++.+.+++.|.+.+.+.++..... ....++.+.. .
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~-~---- 316 (376)
T 3f0h_A 242 ALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVHP-T---- 316 (376)
T ss_dssp HHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEEE-S----
T ss_pred HHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEeC-C----
Confidence 01233445555577778888766543445555555555555555544444221111 1222222221 1
Q ss_pred CcccccccchHHHHHHHHHHHHC-CeEecccC----CcceEEec--CCcHHHHHHHHHHHHHHHhh
Q 011959 415 NFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL--AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~~~~~--~~t~e~i~~~l~~l~~~~~~ 473 (474)
.....++.+.|.++ ||.+.++. ...+|+++ .+|++++++++++|++++++
T Consensus 317 ---------~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 317 ---------TANAYDIFLKLKDEYGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp ---------SSCHHHHHHHHHHHSSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred ---------CCCHHHHHHHHHHhCCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 01135788889988 99998763 34578864 67999999999999998864
No 136
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.94 E-value=4.6e-24 Score=214.08 Aligned_cols=322 Identities=13% Similarity=0.076 Sum_probs=213.0
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC--CCC-C-----CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFG-A-----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEAC 168 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~-~-----~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~ 168 (474)
+..|+|+.++. ..+|+|++++.+++.+.. ..+ + ..+...++.++++++++ ..++++|++||++++
T Consensus 26 ~~~~ld~~~~~------~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al 99 (406)
T 3cai_A 26 GWVHFDAPAGM------LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLL 99 (406)
T ss_dssp SCEECBGGGCC------CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHH
T ss_pred CeEEEeCCCcC------CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHH
Confidence 46788877651 478999999999997632 111 1 13556788888888886 357899999999999
Q ss_pred HHHHHHh-HhhcCCcEEEEEeCCCCCCchhHHHh---cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC
Q 011959 169 MGVLRLA-RAFTGRERIIKFEGCYHGHADPFLVK---AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK 244 (474)
Q Consensus 169 ~~al~~a-r~~~~~~~ii~~~~~yhg~~~~~~~~---~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~ 244 (474)
+.+++.. +...++++||+.+++|++........ .|..+..++.....+. -|+++|++.++
T Consensus 100 ~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~-------------~d~~~l~~~l~--- 163 (406)
T 3cai_A 100 SLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGE-------------LPTWQWESLIS--- 163 (406)
T ss_dssp HHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCC-------------CCGGGHHHHCC---
T ss_pred HHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCC-------------cCHHHHHHHhC---
Confidence 9998842 12456678999888888765544332 3433322211100110 17889998886
Q ss_pred CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcce
Q 011959 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPV 322 (474)
Q Consensus 245 ~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~i 322 (474)
+++++|++++++|++|.+.+ +++|.++|++||++||+||+|+.-.. ......++ +|++ +++|.+|++ +
T Consensus 164 ~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~g~~--~~~~~~~~--~d~~~~s~~K~~g~~--~ 233 (406)
T 3cai_A 164 KSTRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAAAPYR--LLDIRETD--ADVVTVNAHAWGGPP--I 233 (406)
T ss_dssp TTEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTTTTTC--CCCHHHHC--CSEEEEEGGGGTSCS--C
T ss_pred CCceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccccCCC--CCCchhcC--CCEEEeehhhhcCCC--c
Confidence 36889999999999999998 88999999999999999999962111 12222334 5665 688987654 9
Q ss_pred E-EEEecHHHHHhhcCCCCcc------cccCCCCChHHHHHHHHHHHHhcCC-----------------CHHHHHHHHHH
Q 011959 323 G-AYGGRRDIMEMVAPAGPMY------QAGTLSGNPLAMTAGIHTLKRLKEP-----------------GTYEYLNKITG 378 (474)
Q Consensus 323 G-~~~~~~~i~~~~~~~~~~~------~~~t~~~~~~~~aaa~aal~~~~~~-----------------~~~~~~~~~~~ 378 (474)
| ++++++++++.+.+....+ .....+.|+.+++++.++++.+.+. ++.++++++.+
T Consensus 234 G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (406)
T 3cai_A 234 GAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFD 313 (406)
T ss_dssp EEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 9 9999999988776421100 0113346777887888888877642 23344445555
Q ss_pred HHHHHHHHHhhhcCCeeEEe---eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----------
Q 011959 379 ELTQGIIDAGKKAGHAICGG---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------- 445 (474)
Q Consensus 379 ~l~~~L~~~~~~~~~~~~v~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------- 445 (474)
++.+.|++ .+...... ..+.++++.+... ...++.+.|.++||.+.++.
T Consensus 314 ~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~ 375 (406)
T 3cai_A 314 YLMVSLRS----LPLVMLIGRPEAQIPVVSFAVHKV--------------PADRVVQRLADNGILAIANTGSRVLDVLGV 375 (406)
T ss_dssp HHHHHHHT----CTTEEECCCCSSBCSEEEEEETTB--------------CHHHHHHHHHHTTEECEECCSCHHHHHHTT
T ss_pred HHHHHHhc----CCCeEEcCCccccCCEEEEEECCc--------------CHHHHHHHHHHCCcEEecCChHHHHHHcCC
Confidence 55555544 32111111 1344666665311 12567888889999998753
Q ss_pred ---CcceEEecC--CcHHHHHHHHHHHHH
Q 011959 446 ---FEAGFTSLA--HSSDDIQHTITAAEK 469 (474)
Q Consensus 446 ---~~~~~~~~~--~t~e~i~~~l~~l~~ 469 (474)
...+|+++. .|++++++++++|++
T Consensus 376 ~~~~~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 376 NDVGGAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp TTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence 246788654 489999999999875
No 137
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.94 E-value=2.6e-25 Score=221.34 Aligned_cols=332 Identities=15% Similarity=0.131 Sum_probs=218.1
Q ss_pred EEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHH
Q 011959 92 HMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGV 171 (474)
Q Consensus 92 ~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~a 171 (474)
.++|.+++.+.++...++...++|..++..+.+. ++++++++.++..+.++|++||++|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~-----------------~~~~~l~~~~~~~~~v~~~~sgt~a~~~~ 67 (379)
T 3ke3_A 5 LRQDIDPNGLLEYSVVYTDRALNHMSKAFQEVMN-----------------DLLSNLKTVYNAEAAVIIPGSGTYGMEAV 67 (379)
T ss_dssp ---CCSTTSCCCCCSSCCTTSCCTTSHHHHHHHH-----------------HHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred hhccCCHHHHHHHHHhccCCCCCCCCHHHHHHHH-----------------HHHHHHHHHhCCCCEEEEcCChhHHHHHH
Confidence 4678999999998877766677887776654332 34444555554336788999999999999
Q ss_pred HHHhHhhcCCcEEEEEeCCCCCCchhHHHh-cCCC--CccCCCCCC--CCCCCCCCCceEEccCCCHHHHHHHHhcCCCC
Q 011959 172 LRLARAFTGRERIIKFEGCYHGHADPFLVK-AGSG--VATLGLPDS--PGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (474)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~~~~~-~g~~--~~~~~~~~~--~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (474)
++ .+.++++||+++++||+.....+.. .|.+ +..++.+.. .... ..+...|++++++.++++ +
T Consensus 68 ~~---~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~-------~~~~~~d~~~l~~~i~~~--~ 135 (379)
T 3ke3_A 68 AR---QLTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAP-------KPFAPVDIETAVAKIKED--K 135 (379)
T ss_dssp HH---HHCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSSC-------CCEECCCHHHHHHHHHHH--T
T ss_pred HH---hCCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEecccccccccc-------CCCCCCCHHHHHHHHhhc--C
Confidence 87 4567889999999999865433322 2321 111111000 0000 001124899999999642 4
Q ss_pred eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhhcCCCcceEEEE
Q 011959 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYG 326 (474)
Q Consensus 247 ~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~ 326 (474)
+++|++..+++++|.+.| .+++++|+++|++||++||+||+++| +..+..+.++++..+.+++|+++++.++|+++
T Consensus 136 ~~~v~~~~~~~~~G~~~~-~~~l~~i~~~~~~~~~~li~D~~~~g---~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~ 211 (379)
T 3ke3_A 136 SAIVYAPHVETSSGIILS-EEYIKALSEAVHSVGGLLVIDCIASG---CVWLDMKELGIDVLISAPQKGWSSTPCAGLVM 211 (379)
T ss_dssp CSEEEEESEETTTTEECC-HHHHHHHHHHHHHTTCEEEEECTTCT---TCCCCHHHHTCSEEEECTTTTTCSCCCEEEEE
T ss_pred CcEEEEEeecCCCceeCC-HHHHHHHHHHHHHcCCEEEEEecccC---CccccccccCCCEEEecchhhcCCCCceEEEE
Confidence 677888888888887765 56799999999999999999999972 33445556677666667889998766799999
Q ss_pred ecHHHHHhhcCCC--Cccc-----------------ccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHH
Q 011959 327 GRRDIMEMVAPAG--PMYQ-----------------AGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGI 384 (474)
Q Consensus 327 ~~~~i~~~~~~~~--~~~~-----------------~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L 384 (474)
+++++++.+.+.. ..+. ..+++.|+.++++..++|+.+.+ ++..++.+++.+++++.|
T Consensus 212 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l 291 (379)
T 3ke3_A 212 LSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVL 291 (379)
T ss_dssp ECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 9999988886421 1111 01236678888888899988765 356677777888888888
Q ss_pred HHHhhhcCCeeEEee-eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC---------CcceEEec-
Q 011959 385 IDAGKKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFTSL- 453 (474)
Q Consensus 385 ~~~~~~~~~~~~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------~~~~~~~~- 453 (474)
+++. ..+...... .+.+..+... +. . ..+.+.|.++||++.++. ...+|+++
T Consensus 292 ~~~g--~~~~~~~~~~~~~i~~~~~~-------------~~-~-~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~ 354 (379)
T 3ke3_A 292 TDKG--IESVAAEGFEAPGVVVSYTE-------------RD-D-MHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLF 354 (379)
T ss_dssp HHTT--CCBSBCTTCBCSSEEEEECS-------------CH-H-HHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECC
T ss_pred HHcC--CEecCCccccCceEEEEccC-------------Cc-c-hHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCC
Confidence 7652 111111000 1112222211 11 1 123567889999988764 34567754
Q ss_pred -CCcHHHHHHHHHHHHHHHhh
Q 011959 454 -AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 454 -~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+|++||++++++|++++++
T Consensus 355 ~~~t~~di~~~~~~l~~~l~~ 375 (379)
T 3ke3_A 355 GLDKLTDIDGTVERFEKALDE 375 (379)
T ss_dssp SHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 57999999999999998875
No 138
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.94 E-value=3.5e-25 Score=218.18 Aligned_cols=323 Identities=13% Similarity=0.037 Sum_probs=205.9
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhc
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFT 179 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~ 179 (474)
+++|.++ ..|+.+|++++++.+++.......+..+.+.+++++++++++ ..+++++++||++|++.+++.+ ..
T Consensus 15 ~i~l~~~----~~~~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~--~~ 88 (359)
T 1svv_A 15 PYSFVND----YSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLA--LR 88 (359)
T ss_dssp CEECSCS----CSSCCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHH--CC
T ss_pred eEEecCC----CcCCCCHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHH--hC
Confidence 5566543 456789999999999886532233467889999999999886 5678999999999999999964 23
Q ss_pred CCcEEEEEeCCCCCCchh-HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC----CCCeEEEEEcc
Q 011959 180 GRERIIKFEGCYHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN----KGEIAAIILEP 254 (474)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~-~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~----~~~~a~vi~ep 254 (474)
++++|++.+++||+.... .+...|..+..++.. .+. -|+++|++.++++ +.++++|++++
T Consensus 89 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~-------------~d~~~l~~~l~~~~~~~~~~~~~v~~~~ 153 (359)
T 1svv_A 89 PWEAVIATQLGHISTHETGAIEATGHKVVTAPCP--DGK-------------LRVADIESALHENRSEHMVIPKLVYISN 153 (359)
T ss_dssp TTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT--TSC-------------CCHHHHHHHHHHSCSTTSCEEEEEEEES
T ss_pred CCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC--CCe-------------ecHHHHHHHHHHHHhccCCCceEEEEEc
Confidence 567888889999886553 233334332221111 000 1699999998753 12478888887
Q ss_pred ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC-CccccccC--CCCceee--hhhhcCCCcceEEEEecH
Q 011959 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFG--VTPDLTT--LGKIIGGGLPVGAYGGRR 329 (474)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~-~~~~~~~g--~~pdi~t--~sK~l~~G~~iG~~~~~~ 329 (474)
+ +++|.+.+ .+++++|+++|++||++||+||+|.+|..+. ......++ ..+|+++ .+|. ++...+|++++++
T Consensus 154 ~-~ptG~~~~-~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~-g~~~~~g~l~~~~ 230 (359)
T 1svv_A 154 T-TEVGTQYT-KQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA-GGMFGEALIILND 230 (359)
T ss_dssp S-CTTSCCCC-HHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT-TCSSCEEEEECSG
T ss_pred C-CCCceecC-HHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC-CCCCceEEEEEcc
Confidence 7 57888776 5679999999999999999999996651111 11111111 2356654 5785 3335679999999
Q ss_pred HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEE
Q 011959 330 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (474)
Q Consensus 330 ~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (474)
++++.+.... .....+++.+....++..+. +++ +++.++++++++++.+.| +. ....+. .+..+.++++
T Consensus 231 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~l~~~L-~~-~~~~~~--~~~~~~~~~~ 302 (359)
T 1svv_A 231 ALKPNARHLI-KQRGALMAKGWLLGIQFEVL---MKDNLFFELGAHSNKMAAILKAGL-EA-CGIRLA--WPSASNQLFP 302 (359)
T ss_dssp GGCTTHHHHH-HHTTCCCTTTHHHHHHHHHH---TSTTHHHHHHHHHHHHHHHHHHHH-HH-TTCCBS--SCCSSSEECB
T ss_pred cHHHHHHHHH-hcCCcccccchhhHHHHHHH---HhhhhHHHHHHHHHHHHHHHHHHh-cc-CCeEEc--cCCccceEEE
Confidence 8877665210 01222333233333332222 333 345666777777777777 32 122211 1223444443
Q ss_pred EEecCCCcCcccccccchHHHHHHHHHHHHC-CeEeccc---CCcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPS---QFEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~---~~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+. .++.+.|+++ ||++.+. +...+|++ +.++++++++++++|++++++
T Consensus 303 ~~~------------------~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 303 ILE------------------NTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp EEE------------------HHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred EcC------------------HHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence 331 3678889998 9988432 23456774 567999999999999998765
No 139
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.94 E-value=1.5e-25 Score=225.00 Aligned_cols=326 Identities=12% Similarity=0.093 Sum_probs=210.9
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHh--cCCCC---C--CCH---HHHHH-HHHHHhhCCCCCeEEEeCCHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTSFG---A--PCL---LENVL-AEMVISAVPSIEMVRFVNSGTEA 167 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~--~~~~~---~--~~~---~~~~l-a~~l~~~~~~~~~v~~~~sGseA 167 (474)
++|||+.++. +++ +|+|++++.+++.+ ...+. + ... ..+++ .++++++++.....++++||++|
T Consensus 23 ~~~i~~~~~~--~~~---~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a 97 (407)
T 2dkj_A 23 REGLELIASE--NFV---SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQA 97 (407)
T ss_dssp HTSEECCTTC--CCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred hcceeeccCC--CCC---CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcceEEecchHHH
Confidence 4678888875 344 89999999999864 22121 0 111 22222 24777777432333667789999
Q ss_pred HHHHHHHhHhhcCCcEEEEEeCCCCCCc--hhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCC
Q 011959 168 CMGVLRLARAFTGRERIIKFEGCYHGHA--DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG 245 (474)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~--~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 245 (474)
++.+++.+ ..++++|++.+++|++.. ...+...|..+.....+..+. ....|+++|++.+++.
T Consensus 98 ~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~d~~~l~~~l~~~-- 162 (407)
T 2dkj_A 98 NMAVYMAL--MEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPD-----------TELIDLEEVRRLALEH-- 162 (407)
T ss_dssp HHHHHHHH--CCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTT-----------TSSCCHHHHHHHHHHH--
T ss_pred HHHHHHHh--cCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcc-----------cCccCHHHHHHHHhhc--
Confidence 99999964 456678999999988763 122222222111110100000 0013899999998742
Q ss_pred CeEEEEE-ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC-c-ccCCCccccccCCCCcee--ehhhhcCCCc
Q 011959 246 EIAAIIL-EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG-F-RLAYGGAQEYFGVTPDLT--TLGKIIGGGL 320 (474)
Q Consensus 246 ~~a~vi~-ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g-~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~ 320 (474)
++++|++ +|+++ .+.+ +++|.++|++||++||+||+|++ + ..+.... .++ .+|++ ++||+++ |+
T Consensus 163 ~~~~v~~~~p~~~---~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l~-g~ 231 (407)
T 2dkj_A 163 RPKVIVAGASAYP---RFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--PLP-YAHVVTSTTHKTLR-GP 231 (407)
T ss_dssp CCSEEEECCSSCC---SCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--CTT-TCSEEEEESSGGGC-CC
T ss_pred CCeEEEEeccccC---CCCC----HHHHHHHHHHcCCEEEEEccccccccccCccCC--ccc-cccEEEEeccccCC-CC
Confidence 4567777 56553 4555 99999999999999999999975 6 4443221 112 26776 7999887 66
Q ss_pred ceEEEEec-HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeE
Q 011959 321 PVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (474)
Q Consensus 321 ~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (474)
++|+++++ +++++.+... ...+.+.+.++..++++.++|+.+.+ +++.++++++.+++.+.|++. ++...
T Consensus 232 ~~G~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~ 305 (407)
T 2dkj_A 232 RGGLILSNDPELGKRIDKL--IFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARR----GYRIV 305 (407)
T ss_dssp SCEEEEESCHHHHHHHHHH--HTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEG
T ss_pred CceEEEECCHHHHHHHHhh--hcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhC----Cceee
Confidence 88999999 8998877631 11233445567777777888887643 566777788888888888764 32211
Q ss_pred E-eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----------CcceEEec------CCcHHH
Q 011959 397 G-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTSL------AHSSDD 459 (474)
Q Consensus 397 v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------~~~~~~~~------~~t~e~ 459 (474)
. ++.|.++++.+.... .....+.+.|.++||++.++. ...+|+++ .+|+++
T Consensus 306 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~ 373 (407)
T 2dkj_A 306 TGGTDNHLFLVDLRPKG------------LTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEE 373 (407)
T ss_dssp GGSCSSSEEEEECGGGT------------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGG
T ss_pred cCCCCceEEEEECcccC------------CCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHH
Confidence 1 346788888774210 012567888899999998753 23467765 389999
Q ss_pred HHHHHHHHHHHHhh
Q 011959 460 IQHTITAAEKVLRQ 473 (474)
Q Consensus 460 i~~~l~~l~~~~~~ 473 (474)
+++++++|++++++
T Consensus 374 i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 374 MPLVAELIDRALLE 387 (407)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998764
No 140
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.93 E-value=2.1e-25 Score=224.13 Aligned_cols=316 Identities=14% Similarity=0.082 Sum_probs=212.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHhhCC-CCC-eEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCC
Q 011959 116 ADDQVLAALGETMKKGTSFGA--PCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 191 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~--~~~~~~~la~~l~~~~~-~~~-~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~y 191 (474)
.+|+|++++.+++. .+.. ..+...+++++++++++ ..+ .+++++||++|++.+++.. ..++++|++.+++|
T Consensus 24 ~~~~v~~a~~~~~~---~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~--~~~gd~Vl~~~~~~ 98 (411)
T 3nnk_A 24 ADPRVLRAMSSQLI---GQYDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSA--IRPGDKVLVPVFGR 98 (411)
T ss_dssp CCHHHHHHHTSCCC---CTTCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEEECSH
T ss_pred CCHHHHHHhhcccc---ccccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHh--cCCCCEEEEecCCc
Confidence 47888888876531 1111 12456788888988886 333 4889999999999999963 56678999999999
Q ss_pred CCCc-hhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHH
Q 011959 192 HGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (474)
Q Consensus 192 hg~~-~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (474)
|+.. ...+...|..+..++.... + .-|+++|++.++++ ++++|++++++|++|.+.+ ++
T Consensus 99 ~~~~~~~~~~~~g~~~~~v~~~~~-~-------------~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~ 158 (411)
T 3nnk_A 99 FGHLLCEIARRCRAEVHTIEVPWG-E-------------VFTPDQVEDAVKRI--RPRLLLTVQGDTSTTMLQP----LA 158 (411)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCTT-C-------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CT
T ss_pred hHHHHHHHHHHcCCeEEEEecCCC-C-------------CCCHHHHHHHHhhC--CCeEEEEeCCCCCcceecc----HH
Confidence 8842 2222333432222111100 0 01899999999753 5788999999999999988 88
Q ss_pred HHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhcCCC---Cc------
Q 011959 271 AIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG---PM------ 341 (474)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~~~~---~~------ 341 (474)
+|+++|++||++||+||+|+.-. .......+++...+.+++|+++++.++|++++++++++.+.+.. +.
T Consensus 159 ~i~~l~~~~~~~li~Dea~~~~~--~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~ 236 (411)
T 3nnk_A 159 ELGEICRRYDALFYTDATASLGG--NPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTDAH 236 (411)
T ss_dssp THHHHHHHHTCEEEEECTTTBTT--BCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCTTC
T ss_pred HHHHHHHHcCCEEEEECCcccCC--cccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhccccccccccccc
Confidence 89999999999999999985211 11222333433334467799887778999999999988776422 00
Q ss_pred ------------------------ccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCe
Q 011959 342 ------------------------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHA 394 (474)
Q Consensus 342 ------------------------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (474)
......+.|..+++++.++++.+.+ ++..++++++.+++.+.|+++. ..+.
T Consensus 237 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~~~~ 314 (411)
T 3nnk_A 237 RDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAMG--LETF 314 (411)
T ss_dssp CCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--CCBC
T ss_pred ccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC--CEeC
Confidence 0112235577888888888887654 3567778888888888887752 1111
Q ss_pred eE-EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC----CcceEEec---CCcHHHHHHHHH
Q 011959 395 IC-GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSSDDIQHTIT 465 (474)
Q Consensus 395 ~~-v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~~~~~---~~t~e~i~~~l~ 465 (474)
.. ....+.++++.+.+. ....++.+.|+++ ||.+.++. ...+|+++ ..|+++++++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~-------------~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~ 381 (411)
T 3nnk_A 315 GDLKHKMNNVLGVVIPQG-------------INGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLS 381 (411)
T ss_dssp SCGGGBCSSEEEEECCTT-------------CCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHH
T ss_pred CCcccccccEEEEECCCC-------------CCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHH
Confidence 10 112356666665321 1125778888876 99998752 23577765 458999999999
Q ss_pred HHHHHHhh
Q 011959 466 AAEKVLRQ 473 (474)
Q Consensus 466 ~l~~~~~~ 473 (474)
+|++++++
T Consensus 382 ~l~~~l~~ 389 (411)
T 3nnk_A 382 ALEAVLNY 389 (411)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 141
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.93 E-value=4.9e-25 Score=221.78 Aligned_cols=321 Identities=13% Similarity=0.020 Sum_probs=209.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHHhhCC-CCCeEE-EeCCHHHHHHHHHHHhHhhcCCcEEEE
Q 011959 112 IIGHADDQVLAALGETMKKGTSFGA---PCLLENVLAEMVISAVP-SIEMVR-FVNSGTEACMGVLRLARAFTGRERIIK 186 (474)
Q Consensus 112 ~lG~~~p~v~~a~~~~~~~~~~~~~---~~~~~~~la~~l~~~~~-~~~~v~-~~~sGseA~~~al~~ar~~~~~~~ii~ 186 (474)
+++++++.+.+++.+++.+.....+ ..+...+++++++++++ ..+.++ +++||++|++.+++.. ..++++|++
T Consensus 14 ~~~p~p~~~~~~v~~a~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l--~~~gd~Vl~ 91 (416)
T 3isl_A 14 IMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV--IEPEDDVLI 91 (416)
T ss_dssp ECSSSSCCCCHHHHHHTTSCCCCTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH--CCTTCEEEE
T ss_pred eecCCCcCcCHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh--cCCCCEEEE
Confidence 3444444444555555544221122 23457889999999997 345554 8999999999999853 556789999
Q ss_pred EeCCCCCCch-hHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCC
Q 011959 187 FEGCYHGHAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 265 (474)
Q Consensus 187 ~~~~yhg~~~-~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~ 265 (474)
.+++||+... ..+...|..+..++.... + .-|+++|++.+++. ++++|++++++|++|.+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~-------------~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~- 154 (416)
T 3isl_A 92 PIYGRFGYLLTEIAERYGANVHMLECEWG-T-------------VFDPEDIIREIKKV--KPKIVAMVHGETSTGRIHP- 154 (416)
T ss_dssp EESSHHHHHHHHHHHHTTCEEEEEECCTT-C-------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC-
T ss_pred ecCCcccHHHHHHHHhcCCeeEEEecCCC-C-------------CCCHHHHHHHHhhC--CCcEEEEEccCCCCceecC-
Confidence 9999987332 223333443222111100 0 01899999999742 4688999999999999998
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCCC----
Q 011959 266 PDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAG---- 339 (474)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~---- 339 (474)
+++|.++|++||++||+||+|+.... ......++ +|++ +++|++.++.++|++++++++++.+.+.+
T Consensus 155 ---l~~i~~l~~~~~~~li~D~a~~~~~~--~~~~~~~~--~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~ 227 (416)
T 3isl_A 155 ---LKAIGEACRTEDALFIVDAVATIGGC--EVKVDEWK--IDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVER 227 (416)
T ss_dssp ---CHHHHHHHHHTTCEEEEECTTTTTTS--CCCTTTTT--CSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC-----
T ss_pred ---HHHHHHHHHHcCCEEEEECCccccCC--CcchhhcC--CCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccc
Confidence 88999999999999999999951110 11122223 5655 57799887778999999999988776321
Q ss_pred -------------------------------CcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHH
Q 011959 340 -------------------------------PMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGII 385 (474)
Q Consensus 340 -------------------------------~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~ 385 (474)
........+.|..++++..++++.+.+ ++..++++++.+++.+.|+
T Consensus 228 Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~ 307 (416)
T 3isl_A 228 GIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIK 307 (416)
T ss_dssp -------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 001112335577788888788877654 3677777888888888887
Q ss_pred HHhhhcCCeeEE-eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC----CcceEEec---CCc
Q 011959 386 DAGKKAGHAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHS 456 (474)
Q Consensus 386 ~~~~~~~~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~~~~~---~~t 456 (474)
+. ...+.... ...+.++++.+.+. ....++.+.|.++ ||.+.++. ...+|+++ ..+
T Consensus 308 ~~--g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~ 372 (416)
T 3isl_A 308 AM--GLRLFGDDSCKMPVVTCVEIPGG-------------IDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCR 372 (416)
T ss_dssp HT--TCCBCSCGGGBCTTEEEEECCTT-------------CCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCS
T ss_pred Hc--CCEeccCccccCCcEEEEeCCCC-------------CCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCc
Confidence 74 22211110 11255666665321 1125788888887 99998753 34577765 334
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011959 457 SDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 457 ~e~i~~~l~~l~~~~~~ 473 (474)
++++++++++|++++++
T Consensus 373 ~e~i~~~~~~l~~~~~~ 389 (416)
T 3isl_A 373 KENVLFVLAGLEAVLLR 389 (416)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44499999999999875
No 142
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.93 E-value=1.6e-24 Score=218.67 Aligned_cols=326 Identities=16% Similarity=0.119 Sum_probs=212.1
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHH--hcCCCC---------CCCHHHHHHHHHHHhhCC-CCCeEEEeCC
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK--KGTSFG---------APCLLENVLAEMVISAVP-SIEMVRFVNS 163 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~--~~~~~~---------~~~~~~~~la~~l~~~~~-~~~~v~~~~s 163 (474)
.++.-|+|+.++ ++.+|+|++++.+++. +..... ...+...++.++++++++ ..++++|++|
T Consensus 20 ~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g 93 (423)
T 3lvm_A 20 MKLPIYLDYSAT------TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSG 93 (423)
T ss_dssp CCSSEECBTTTC------CCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESS
T ss_pred cCCCEeecCCCc------CCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCC
Confidence 456678887654 4679999999999887 321110 013455788899998886 4569999999
Q ss_pred HHHHHHHHHHHhH-hhc-CCcEEEEEeCCCCCCchhHHHh--cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHH
Q 011959 164 GTEACMGVLRLAR-AFT-GRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENL 239 (474)
Q Consensus 164 GseA~~~al~~ar-~~~-~~~~ii~~~~~yhg~~~~~~~~--~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~ 239 (474)
|++|++.+++.+. .+. .++.|++.+++|++........ .|..+..++... .+ .-|+++|++.
T Consensus 94 gt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~ 159 (423)
T 3lvm_A 94 ATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR-NG-------------IIDLKELEAA 159 (423)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT-TS-------------CCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC-CC-------------ccCHHHHHHh
Confidence 9999999999543 233 3678888888888865444322 233222211111 00 0189999998
Q ss_pred HhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceee--hhhhcC
Q 011959 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKIIG 317 (474)
Q Consensus 240 l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t--~sK~l~ 317 (474)
+++ ++++|++++++|++|.+.+ +++|+++|++||++||+||+|++-. .........+|+++ ++|.++
T Consensus 160 i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~----~~~~~~~~~~di~~~s~sK~~g 228 (423)
T 3lvm_A 160 MRD---DTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSVGK----LPIDLSQLKVDLMSFSGHKIYG 228 (423)
T ss_dssp CCT---TEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTTTT----SCCCTTTSCCSEEEEESTTTTS
T ss_pred cCC---CcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhcCC----CCcChhhcCCCEEEechHHhcC
Confidence 873 6899999999999999999 9999999999999999999996321 11122233567775 669665
Q ss_pred CCcceEEEEecHHHHHhhcCCCC----cccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhc
Q 011959 318 GGLPVGAYGGRRDIMEMVAPAGP----MYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKA 391 (474)
Q Consensus 318 ~G~~iG~~~~~~~i~~~~~~~~~----~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~ 391 (474)
+.++|++++++++++.+.+... .....+.+.++.+++++.++++.+.+ +++.++++++.+++++.|++ .
T Consensus 229 -~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~----~ 303 (423)
T 3lvm_A 229 -PKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD----I 303 (423)
T ss_dssp -CSSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S
T ss_pred -CCCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C
Confidence 3349999999887666653110 00122445677888888888887654 45555566666666666543 3
Q ss_pred CCeeEEee----eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----------------------
Q 011959 392 GHAICGGY----ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------------------- 445 (474)
Q Consensus 392 ~~~~~v~~----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------------- 445 (474)
+....... .+.++.+.+... + ...+.+.|.+ |.+.++.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~ 367 (423)
T 3lvm_A 304 EEVYLNGDLEHGAPNILNVSFNYV-----------E---GESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDEL 367 (423)
T ss_dssp TTEEEESCSTTBCTTEEEEEETTS-----------C---HHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHH
T ss_pred CCEEEeCCccccCCCeEEEEeCCC-----------C---HHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccc
Confidence 21111111 134555555211 1 1456666655 7776642
Q ss_pred -CcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 446 -FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 446 -~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
...+|++ ..+|++++++++++|++++++
T Consensus 368 ~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~ 398 (423)
T 3lvm_A 368 AHSSIRFSLGRFTTEEEIDYTIELVRKSIGR 398 (423)
T ss_dssp HHTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1346775 456999999999999998864
No 143
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.93 E-value=2.5e-25 Score=223.00 Aligned_cols=334 Identities=13% Similarity=0.061 Sum_probs=204.6
Q ss_pred EEeccCChhhccCCCC--CHHHHHHHHHHHHh-c-CCCC---CCCHHHHHHHHHHHhhCC---CCCeEEE--eCCHHHHH
Q 011959 101 YIDYVGSWGPAIIGHA--DDQVLAALGETMKK-G-TSFG---APCLLENVLAEMVISAVP---SIEMVRF--VNSGTEAC 168 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~--~p~v~~a~~~~~~~-~-~~~~---~~~~~~~~la~~l~~~~~---~~~~v~~--~~sGseA~ 168 (474)
.|||..|...+..++. .+.+.+++.+.+.. + ..|. +..++++++++++...++ ..++|++ |+||++|+
T Consensus 30 ~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al 109 (401)
T 7aat_A 30 KMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSL 109 (401)
T ss_dssp CEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred ceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHH
Confidence 5788777322222322 35788888777653 2 2222 234677788888876553 2788877 99999999
Q ss_pred HHHHHHhHhhcC-CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 169 MGVLRLARAFTG-RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 169 ~~al~~ar~~~~-~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
..+++..+.+.+ ++.|++.+++|+++.. .+...|..+..++...... .. -|++.+++.+++..+++
T Consensus 110 ~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~-~~~~~g~~~~~~~~~~~~~---------~~---~d~~~l~~~l~~~~~~~ 176 (401)
T 7aat_A 110 RVGANFLQRFFKFSRDVYLPKPSWGNHTP-IFRDAGLQLQAYRYYDPKT---------CS---LDFTGAMEDISKIPEKS 176 (401)
T ss_dssp HHHHHHHHHHCTTCCEEEEEESCCTTHHH-HHHHTTCEEEEEECEETTT---------TE---ECHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHhccCCCEEEEcCCCchhHHH-HHHHcCCeeEeeeeecccc---------Cc---cCHHHHHHHHHhCCCCc
Confidence 999986554444 6789999999987543 3344444322211100000 00 07888888887654567
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC---Cccccc-cCCCCce---eehhhhcC-C
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQEY-FGVTPDL---TTLGKIIG-G 318 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~---~~~~~~-~g~~pdi---~t~sK~l~-~ 318 (474)
++|+++.++|++|.+.+..+ +++|.++|++||+++|+||+|.+| ..+. ...... .+..+++ .+|||.++ .
T Consensus 177 ~~v~i~~p~NPtG~~~~~~~-l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~ 255 (401)
T 7aat_A 177 IILLHACAHNPTGVDPRQEQ-WKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLY 255 (401)
T ss_dssp EEEEESSSCTTTCCCCCHHH-HHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCG
T ss_pred EEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccc
Confidence 88888888899998876555 999999999999999999999888 4321 111111 1233343 48999999 7
Q ss_pred CcceEEEEe---cHH----HHHhhcCCCCcccccCCCCChHHHHHHHHHHHH-------hcC-CCHHHHHHHHHHHHHHH
Q 011959 319 GLPVGAYGG---RRD----IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-------LKE-PGTYEYLNKITGELTQG 383 (474)
Q Consensus 319 G~~iG~~~~---~~~----i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-------~~~-~~~~~~~~~~~~~l~~~ 383 (474)
|+|+||+++ +++ +.+.+. ......+.+.+.+++.++...++. .+. ++..++++++++++.+.
T Consensus 256 G~RiG~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~ 332 (401)
T 7aat_A 256 GERAGAFTVICRDAEEAKRVESQLK---ILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSN 332 (401)
T ss_dssp GGCEEEEEEECSSHHHHHHHHHHHH---HHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEEEeCCHHHHHHHHHHHH---HHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999875 666 333333 122223344455555555555531 111 34556666777777777
Q ss_pred HHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecC-CcHHHHHH
Q 011959 384 IIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQH 462 (474)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~-~t~e~i~~ 462 (474)
|+++....++....+..|.++++.+. .+.+...+.++||++.++ +|+++. +++++|++
T Consensus 333 L~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ll~~~gi~v~~~----~Ris~~~~~~~~i~~ 391 (401)
T 7aat_A 333 LKKEGSSHNWQHITDQIGMFCFTGLK-----------------PEQVERLTKEFSIYMTKD----GRISVAGVASSNVGY 391 (401)
T ss_dssp HHHTTCCSCCHHHHHCCSSEEECCCC-----------------HHHHHHHHHHHCEECCTT----CEEEGGGCCTTTHHH
T ss_pred HHhcCCCCCCceecCCcceEEecCCC-----------------HHHHHHHHHhCCEeccCC----CeEEeccCChhhHHH
Confidence 76642111111112233444333221 123334445779999865 577654 57777999
Q ss_pred HHHHHHHHHh
Q 011959 463 TITAAEKVLR 472 (474)
Q Consensus 463 ~l~~l~~~~~ 472 (474)
++++|+++++
T Consensus 392 ~~~~l~~~~~ 401 (401)
T 7aat_A 392 LAHAIHQVTK 401 (401)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998763
No 144
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.93 E-value=4.3e-25 Score=216.86 Aligned_cols=310 Identities=15% Similarity=0.119 Sum_probs=211.0
Q ss_pred CCHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCCC---CCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCC
Q 011959 116 ADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVPS---IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCY 191 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~~---~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~y 191 (474)
.+|+|++++.+++.. +++ ...+...++.++++++++. .+++++++||++|++.+++. +.+ ++|++.+++|
T Consensus 11 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~---~~~-d~vl~~~~~~ 84 (353)
T 2yrr_A 11 IPERVQKALLRPMRG--HLDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLAN---LDR-GPVLVLVNGA 84 (353)
T ss_dssp CCHHHHGGGGSCCCC--TTCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHT---CSC-CCEEEEECSH
T ss_pred CCHHHHHHHhccccc--ccCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHH---hcC-CcEEEEcCCC
Confidence 579999998877654 121 1234578899999998862 46899999999999999984 444 7899999999
Q ss_pred CCCc-hhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHH
Q 011959 192 HGHA-DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (474)
Q Consensus 192 hg~~-~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (474)
|+.. .......|..+..++... .+ ..|+++|++.++++ ++++|++++++|++|.+.+ ++
T Consensus 85 ~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----~~ 144 (353)
T 2yrr_A 85 FSQRVAEMAALHGLDPEVLDFPP-GE-------------PVDPEAVARALKRR--RYRMVALVHGETSTGVLNP----AE 144 (353)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCT-TS-------------CCCHHHHHHHHHHS--CCSEEEEESEETTTTEECC----HH
T ss_pred chHHHHHHHHHcCCceEEEeCCC-CC-------------CCCHHHHHHHHHhC--CCCEEEEEccCCCcceecC----HH
Confidence 8851 112223343322211110 00 12899999999853 5678888899999999998 89
Q ss_pred HHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCc------
Q 011959 271 AIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPM------ 341 (474)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~------ 341 (474)
+|.++|++||++||+||+|. + .. ......++ +|++ +++|+++++..+|++++++++++.+......
T Consensus 145 ~i~~l~~~~~~~li~D~a~~-~~~~--~~~~~~~~--~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~ 219 (353)
T 2yrr_A 145 AIGALAKEAGALFFLDAVTT-LGML--PFSMRAMG--VDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLAR 219 (353)
T ss_dssp HHHHHHHHHTCEEEEECTTT-TTTS--CCCHHHHT--CSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHH
T ss_pred HHHHHHHHcCCeEEEEcCcc-cccc--cccccccC--ceEEEecCcccccCCCceEEEEECHHHHHHhccCCCccccHHH
Confidence 99999999999999999994 4 22 12222233 5665 4679887655589999999998877510000
Q ss_pred ------ccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe--eeceeEEEEEec
Q 011959 342 ------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG--YISGMFGFFFTE 410 (474)
Q Consensus 342 ------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~--~~g~~~~i~~~~ 410 (474)
.....++.|+.+++++.++++.+.+ ++..++++++.+++++.|+++ ++..... ..+.++++.+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~ 295 (353)
T 2yrr_A 220 VAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR----GFRPYPKASPLPTVLVVRPPE 295 (353)
T ss_dssp HHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT----TCEESCSSSBCTTEEEEECCT
T ss_pred HhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC----CCccccCccCCCeEEEEECCC
Confidence 0112335677788888888887644 356677778888888888764 2211111 135555666531
Q ss_pred CCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEec--CCcHHHHH-HHHHHHHHHHhh
Q 011959 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSL--AHSSDDIQ-HTITAAEKVLRQ 473 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~--~~t~e~i~-~~l~~l~~~~~~ 473 (474)
. ....++.+.|.++||.+.++. ...+|+++ ..++++++ +++++|++++++
T Consensus 296 ~-------------~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 296 G-------------VDADRLVRALYAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp T-------------CCHHHHHHHHHHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred C-------------CCHHHHHHHHHHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 1 012578889999999998753 34678875 46889998 999999998865
No 145
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.93 E-value=9.9e-25 Score=218.34 Aligned_cols=336 Identities=12% Similarity=0.032 Sum_probs=206.7
Q ss_pred EEEeccCChhhccCCC--CCHHHHHHHHHHH-Hhc-C-CCC---CCCHHHHHHHHHHHhhCC---CCC--eEEEeCCHHH
Q 011959 100 EYIDYVGSWGPAIIGH--ADDQVLAALGETM-KKG-T-SFG---APCLLENVLAEMVISAVP---SIE--MVRFVNSGTE 166 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~--~~p~v~~a~~~~~-~~~-~-~~~---~~~~~~~~la~~l~~~~~---~~~--~v~~~~sGse 166 (474)
..|||..|...++-|. ..+.|.+|.. .+ +.. . .|+ +..++++++++++..... ..+ .+++|+||++
T Consensus 30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~ 108 (405)
T 3k7y_A 30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTG 108 (405)
T ss_dssp SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHH
T ss_pred CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHH
Confidence 4578887743334443 4688888876 43 332 2 232 345778888888866543 234 3689999999
Q ss_pred HHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCC
Q 011959 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE 246 (474)
Q Consensus 167 A~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~ 246 (474)
|+..++++...+.+ +.|++.+|+|.++.. .....|..+..+++....+ ..+ |+++|++.+++.+ +
T Consensus 109 al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~-~~~~~g~~~~~v~~~~~~~---------~~~---d~~~l~~~l~~~~-~ 173 (405)
T 3k7y_A 109 AIFVLLEFLKMLNV-ETLYVTNPPYINHVN-MIESRGFNLKYINFFDYNL---------IDI---NYDLFLNDLRNIP-N 173 (405)
T ss_dssp HHHHHHHHHHTTTC-CEEEEESSCCHHHHH-HHHTTTCEEEEECCEETTT---------TEE---CHHHHHHHHHHSC-S
T ss_pred HHHHHHHHHHhcCC-CEEEEeCCCCHhHHH-HHHHcCCeEEEEecccccc---------CCc---CHHHHHHHHHhCC-C
Confidence 99999985433335 999999999988543 3334444332222100000 000 7999999987532 3
Q ss_pred eEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCC---ccccc-cCCCCcee---ehhhhcC
Q 011959 247 IAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYG---GAQEY-FGVTPDLT---TLGKIIG 317 (474)
Q Consensus 247 ~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~---~~~~~-~g~~pdi~---t~sK~l~ 317 (474)
.++++++|. +|++|.+.+.++ +++|.++|++||+++|+||+|.+| ..+.. ..... ....+.++ +|||.|+
T Consensus 174 ~~~i~l~~~~~NPTG~~~s~~~-~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 252 (405)
T 3k7y_A 174 GSSVILQISCYNPCSVNIEEKY-FDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMS 252 (405)
T ss_dssp SCEEEECCSSCTTTCCCCCHHH-HHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSC
T ss_pred CeEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCC
Confidence 567777765 788998887666 999999999999999999999988 43211 11111 12223433 7999999
Q ss_pred -CCcceEEEEe---cHHHHHhhcCC-CCcccccCCCCChHHHHHHHHHHHHh-------cC-CCHHHHHHHHHHHHHHHH
Q 011959 318 -GGLPVGAYGG---RRDIMEMVAPA-GPMYQAGTLSGNPLAMTAGIHTLKRL-------KE-PGTYEYLNKITGELTQGI 384 (474)
Q Consensus 318 -~G~~iG~~~~---~~~i~~~~~~~-~~~~~~~t~~~~~~~~aaa~aal~~~-------~~-~~~~~~~~~~~~~l~~~L 384 (474)
+|||+||+++ ++++++.+... .........+.+.+++.++.++|+.- ++ ..++++++++++.+.+.|
T Consensus 253 l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L 332 (405)
T 3k7y_A 253 LYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKL 332 (405)
T ss_dssp CTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999853 66666544310 01111122234567777777777531 11 233445666666677766
Q ss_pred H----HHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecC-CcHHH
Q 011959 385 I----DAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDD 459 (474)
Q Consensus 385 ~----~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~-~t~e~ 459 (474)
+ ++.....+....+..|+++++.+.. ++++.|.++||++.|++ |++++ .++++
T Consensus 333 ~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~------------------~~~~~L~~~gV~v~p~~----Ris~a~~~~~~ 390 (405)
T 3k7y_A 333 ETYQKKYNLNYDWNVYKKQRGLFSFVPLLA------------------KIAEHLKTHHIYIINNG----RINVSGITKNN 390 (405)
T ss_dssp HHHGGGGTCCCCGGGGSSCCSSEEECGGGG------------------GGTTTTTTTTEECCTTS----EEEGGGCCTTH
T ss_pred HhhhhhcCCCCCCccccCCceEEEecCCCH------------------HHHHHHHHCCEeecCCC----eEEEeccCHHH
Confidence 6 4321000111123344444432210 22345578899999975 88875 68999
Q ss_pred HHHHHHHHHHHHhhC
Q 011959 460 IQHTITAAEKVLRQI 474 (474)
Q Consensus 460 i~~~l~~l~~~~~~~ 474 (474)
|++++++|+++++++
T Consensus 391 i~~~~~~i~~~~~~~ 405 (405)
T 3k7y_A 391 VDYIADKICLSLSQI 405 (405)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999998764
No 146
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.93 E-value=3.4e-25 Score=226.62 Aligned_cols=345 Identities=13% Similarity=0.030 Sum_probs=204.7
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHh
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA 177 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~ 177 (474)
|+.||||.+++++ |+|++++.+++..+.....+.....+|++++++++ +.++++|++||++|++.|++.++.
T Consensus 40 ~~~ylD~~~~~~~-------~~v~~a~~~~l~~~~~~y~~~~~~~~l~~~la~~~-~~~~v~~t~~gt~A~~~al~~~~~ 111 (467)
T 2oqx_A 40 EDVFIDLLTDSGT-------GAVTQSMQAAMMRGDEAYSGSRSYYALAESVKNIF-GYQYTIPTHQGRGAEQIYIPVLIK 111 (467)
T ss_dssp GGCSEECSCCSSC-------SCCCHHHHHHTTSCCCCSSSCHHHHHHHHHHHHHH-CCSEEEEEC--CCSHHHHHHHHHH
T ss_pred CCeeEecccCCCc-------HHHHHHHHHHhccCcceeccCchhHHHHHHHHHHh-CcCcEEEcCCcHHHHHHHHHHHhc
Confidence 5679999887543 88999998887665332234566678888888888 568999999999999999998765
Q ss_pred hc----C--C-cEEEEEeCCCCCCchhHHHh-cCCCCccCCCCCCCCCCCCCCCceEEccC-CCHHHHHHHHhcCC-CCe
Q 011959 178 FT----G--R-ERIIKFEGCYHGHADPFLVK-AGSGVATLGLPDSPGVPKGATYETLTAPF-NDVSALENLFENNK-GEI 247 (474)
Q Consensus 178 ~~----~--~-~~ii~~~~~yhg~~~~~~~~-~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~d~~~le~~l~~~~-~~~ 247 (474)
.+ | + ++||.. .||+.+...... .+........+ ..++.. ......+ .|+++|++.+++++ +++
T Consensus 112 ~~~~~~G~~~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~d~~~Le~~i~~~~~~~~ 184 (467)
T 2oqx_A 112 KREQEKGLDRSKMVAFS--NYFFDTTQGHSQINGCTVRNVYIK--EAFDTG---VRYDFKGNFDLEGLERGIEEVGPNNV 184 (467)
T ss_dssp HHHHHHCCCTTTCEEEE--SSCCHHHHHHHHHTTCEEEECBCT--TTTCTT---SCCTTTTCBCHHHHHHHHHHHCGGGC
T ss_pred cccccCCCCccceEEec--ccccccchhhhhccCcceeecccc--ccccCC---CCCCccCCcCHHHHHHHHHhcCCCce
Confidence 42 4 2 556654 578654333322 22211110000 000000 0000111 18999999997532 368
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC----------c-ccCCCccccccC----CCCc--ee
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG----------F-RLAYGGAQEYFG----VTPD--LT 310 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g----------~-r~g~~~~~~~~g----~~pd--i~ 310 (474)
++|++++++|++|...++.+++++|+++|++||++||+|++|.. . ..|... ..++ ..+| +.
T Consensus 185 ~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~--~~~~~~~~~~~d~~~~ 262 (467)
T 2oqx_A 185 PYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTI--EQITRETYKYADMLAM 262 (467)
T ss_dssp CCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCH--HHHHHHHGGGCSEEEE
T ss_pred eEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccH--HHHhhhhhccCCeEEE
Confidence 99999999888644566677799999999999999999966532 1 112111 0111 1134 35
Q ss_pred ehhhhcCCCcce-EEEEecHH-HHHhhcCCCCc---c-cccCCCCChHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHH
Q 011959 311 TLGKIIGGGLPV-GAYGGRRD-IMEMVAPAGPM---Y-QAGTLSGNPLAMTAGI-HTLKRLKEPGTYEYLNKITGELTQG 383 (474)
Q Consensus 311 t~sK~l~~G~~i-G~~~~~~~-i~~~~~~~~~~---~-~~~t~~~~~~~~aaa~-aal~~~~~~~~~~~~~~~~~~l~~~ 383 (474)
+++|+++. |+ |+++++++ +++.+...... . ...+++.......+++ ..++...+++.+++..++++++++.
T Consensus 263 s~sK~~g~--~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~ 340 (467)
T 2oqx_A 263 SAKKDAMV--PMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDG 340 (467)
T ss_dssp ESSSTTCC--SSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ecccccCC--CCceEEEecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHH
Confidence 78999863 44 56677766 44433210011 0 1112333333222222 2233222224566777888889988
Q ss_pred HHHHhhhcCCeeEEeeeceeEEEEEec--CCCcCcccccccchHHHHHHHHHH-HHCCeEecccCC--------------
Q 011959 384 IIDAGKKAGHAICGGYISGMFGFFFTE--GPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQF-------------- 446 (474)
Q Consensus 384 L~~~~~~~~~~~~v~~~g~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~-------------- 446 (474)
|++. .+. .. +..|.++++.+.. .... ........+.+.| .++||.+.+++.
T Consensus 341 L~~~--~~~--~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~ 408 (467)
T 2oqx_A 341 LEEI--GVV--CQ-QAGGHAAFVDAGKLLPHIP-------ADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLP 408 (467)
T ss_dssp HHHT--TCC--EE-EECSSCEEEEHHHHSTTSC-------GGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCC
T ss_pred HHHC--CCe--ee-cCCceEEEEechhhcccCC-------cccccHHHHHHHHHHhcCceeccccccccccccccccccc
Confidence 8875 233 22 4456677776632 1000 0000135678888 789999987431
Q ss_pred ---cceEEecC---CcHHHHHHHHHHHHHHHhh
Q 011959 447 ---EAGFTSLA---HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 447 ---~~~~~~~~---~t~e~i~~~l~~l~~~~~~ 473 (474)
..+|+++. +|+++|++++++|++++++
T Consensus 409 ~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~ 441 (467)
T 2oqx_A 409 CPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_dssp CSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHS
T ss_pred CccCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence 45677654 8999999999999998864
No 147
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.92 E-value=1.8e-24 Score=220.60 Aligned_cols=345 Identities=15% Similarity=0.048 Sum_probs=210.2
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR 176 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar 176 (474)
.|+.|+||.++.++.. -.+++.+++. .+.....+.....+|.+.+++++ +.+++++++||++|++.+++.+
T Consensus 40 ~~~~ylD~~~~~~~~~---~~~~~~~a~~----~~~~~y~~~~~~~~l~~~la~~~-~~~~~~~~~~gt~a~~~al~~l- 110 (456)
T 2ez2_A 40 SKDIYIDLLTDSGTNA---MSDKQWAGMM----MGDEAYAGSENFYHLERTVQELF-GFKHIVPTHQGRGAENLLSQLA- 110 (456)
T ss_dssp GGGCSEECSCSSSCCC---CCHHHHHHHT----TCCCCSSSCHHHHHHHHHHHHHH-CCSEEEEESSHHHHHHHHHHHH-
T ss_pred cccceeeeccccCCcc---CCHHHHHHhh----cchhhcccChhHHHHHHHHHHHh-CCCcEEEeCCcHHHHHHHHHHh-
Confidence 3567999988754332 2466666664 32222235666778888888887 5679999999999999999853
Q ss_pred hhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-CHHHHHHHHhcCC-CCeEEEEEcc
Q 011959 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-DVSALENLFENNK-GEIAAIILEP 254 (474)
Q Consensus 177 ~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-d~~~le~~l~~~~-~~~a~vi~ep 254 (474)
.++++ |+.+++||+.+...+...|..+...+...... + .+...+.++ |+++|++.+++.. ..+++|++++
T Consensus 111 --~~~gd-i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~-~----~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~ 182 (456)
T 2ez2_A 111 --IKPGQ-YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHD-A----GLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAV 182 (456)
T ss_dssp --CCTTC-EEEESSCCHHHHHHHHHTTCEEEECBCGGGGC-T----TCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEES
T ss_pred --CCCCC-EeccccccchhHHHHHHcCCEEEEeccccccc-c----cccccccCCCCHHHHHHHHHhccccceeEEEEec
Confidence 34444 78888888876666666665443322110000 0 000001122 8999999987532 2458888885
Q ss_pred ccC-CCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC----------c-ccCCCcc--ccccCCCCceeehh-hhcC-C
Q 011959 255 VVG-NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG----------F-RLAYGGA--QEYFGVTPDLTTLG-KIIG-G 318 (474)
Q Consensus 255 ~~~-~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g----------~-r~g~~~~--~~~~g~~pdi~t~s-K~l~-~ 318 (474)
++| ++|.+. +.+++++|+++|++||++||+||+|+. + +.+.... .+..+..+|++++| |.++ .
T Consensus 183 p~n~ptG~~~-~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~ 261 (456)
T 2ez2_A 183 TVNLAGGQPV-SMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLV 261 (456)
T ss_dssp SBTTTTSBCC-CHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCC
T ss_pred cCCCCCCccC-CHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCC
Confidence 554 788654 566699999999999999999999964 4 3332211 01223457877653 4444 4
Q ss_pred CcceEEEEe-cHHHHHhhcCCCCccc-ccCC-CCChHHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCe
Q 011959 319 GLPVGAYGG-RRDIMEMVAPAGPMYQ-AGTL-SGNPLAMTA-GIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHA 394 (474)
Q Consensus 319 G~~iG~~~~-~~~i~~~~~~~~~~~~-~~t~-~~~~~~~aa-a~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~ 394 (474)
| ++|++++ ++++++.+.......+ ..++ +.++..+++ +.+.++.++ +++.++.+++.+++++.|.+. ++.
T Consensus 262 ~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~----g~~ 335 (456)
T 2ez2_A 262 N-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQ-YEYIEHRVKQVRYLGDKLKAA----GVP 335 (456)
T ss_dssp S-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHT----TCC
T ss_pred C-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHhcC----CCc
Confidence 5 6899988 6888776642111111 1122 224444444 555555443 356677777778888887763 222
Q ss_pred eEEeeeceeEEEEEec--CCCcCcccccccchHH-HHHHHHHH-HHCCeEecccC-----------------CcceEEec
Q 011959 395 ICGGYISGMFGFFFTE--GPVYNFEDAKKSETTK-FARFYRGM-LEEGVYFAPSQ-----------------FEAGFTSL 453 (474)
Q Consensus 395 ~~v~~~g~~~~i~~~~--~~~~~~~~~~~~~~~~-~~~~~~~l-~~~Gv~v~~~~-----------------~~~~~~~~ 453 (474)
...+..|.++++.+.. .... .... ...+.+.| .++||.+.+.+ ...+|+++
T Consensus 336 ~~~p~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~ 407 (456)
T 2ez2_A 336 IVEPVGGHAVFLDARRFCEHLT--------QDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTI 407 (456)
T ss_dssp BCSSCCSSEEEEEHHHHTTTSC--------GGGCHHHHHHHHHHHHHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEEC
T ss_pred cccCCCceEEEEEhHHhcCCCC--------hhhccHHHHHHHHHHhcCeeeecccccccccCccccccccCCCCeEEEEe
Confidence 2123346666666531 1000 0111 34556777 57899864421 14567765
Q ss_pred C---CcHHHHHHHHHHHHHHHhh
Q 011959 454 A---HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 454 ~---~t~e~i~~~l~~l~~~~~~ 473 (474)
. ++++++++++++|++++++
T Consensus 408 ~~~~~t~e~i~~~~~~l~~~l~~ 430 (456)
T 2ez2_A 408 PRRVYTYAHMDVVADGIIKLYQH 430 (456)
T ss_dssp CTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHhh
Confidence 5 7999999999999998764
No 148
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.92 E-value=2.3e-24 Score=211.66 Aligned_cols=329 Identities=17% Similarity=0.117 Sum_probs=208.4
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhh
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~ 178 (474)
+++|||.++. +.. .+|++++++.+.... ....++.....+|.+++++++ +.+.+++++||++|+..+++.. .
T Consensus 3 ~~~i~~~~~~---~~~-p~~~~~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~-g~~~~~~~~~gt~a~~~~~~~~--~ 74 (347)
T 1jg8_A 3 HMMIDLRSDT---VTK-PTEEMRKAMAQAEVG-DDVYGEDPTINELERLAAETF-GKEAALFVPSGTMGNQVSIMAH--T 74 (347)
T ss_dssp --CEECSCGG---GCC-CCHHHHHHHHTCCCC-CGGGTCCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHH--C
T ss_pred ceEEEecccc---CCC-CCHHHHHHHhcCCCC-CcccCCChHHHHHHHHHHHHh-CCceEEEecCcHHHHHHHHHHh--c
Confidence 4678988874 333 678898888654321 112235666778888888888 5578899999999999998742 2
Q ss_pred cCCcEEEEEeCCCCCCch-h-HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC---CCCeEEEEEc
Q 011959 179 TGRERIIKFEGCYHGHAD-P-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILE 253 (474)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~-~-~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~e 253 (474)
..+++|++.+++|..... . .....|..+..+ .. ..+ .-|+++|++.+++. .+++++|+++
T Consensus 75 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~-~~~-------------~~d~~~l~~~i~~~~~~~~~~~~v~~~ 139 (347)
T 1jg8_A 75 QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG-KNG-------------AMDPDDVRKAIRPRNIHFPRTSLIAIE 139 (347)
T ss_dssp CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE-ETT-------------EECHHHHHHHSCCSCTTSCCEEEEEEE
T ss_pred CCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC-CCC-------------ccCHHHHHHHhccccccccCceEEEEe
Confidence 345677777766543222 1 223333322111 00 000 01899999998742 1268899999
Q ss_pred cccCCC-CcccCCHHHHHHHHHHHHHhCCEEEEeccccC--c-ccCCCccccccCCCCc--eeehhhhcCCCcceEE-EE
Q 011959 254 PVVGNS-GFIAPKPDFLNAIRRITKENGALLIFDEVMTG--F-RLAYGGAQEYFGVTPD--LTTLGKIIGGGLPVGA-YG 326 (474)
Q Consensus 254 p~~~~~-G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g--~-r~g~~~~~~~~g~~pd--i~t~sK~l~~G~~iG~-~~ 326 (474)
+++|++ |.+.+.+ .+++|.++|++||++||+||+|.- + ..+. ....+....| ++++||++++ ++|+ ++
T Consensus 140 ~~~npt~G~~~~~~-~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~--~~~~~~~~~d~~~~s~sK~l~~--~~G~~~~ 214 (347)
T 1jg8_A 140 NTHNRSGGRVVPLE-NIKEICTIAKEHGINVHIDGARIFNASIASGV--PVKEYAGYADSVMFCLSKGLCA--PVGSVVV 214 (347)
T ss_dssp SSBTTTTSBCCCHH-HHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC--CHHHHHHTCSEEEEESSSTTCC--SSCEEEE
T ss_pred ccccccCCccCcHH-HHHHHHHHHHHCCCEEEeehhhhhcchhhcCC--ChHHhcccccEEEEecccccCC--CceEEEE
Confidence 988887 7766544 499999999999999999998741 1 1111 1111111123 3479999975 4675 56
Q ss_pred ecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEE
Q 011959 327 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (474)
Q Consensus 327 ~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (474)
+++++++.+..... ..++++..+.+.++++..+|+... +. .++..++.+++.+.|+++. ..+. ..+..+.++++
T Consensus 215 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~l~~~L~~~~--~~~~-~~~~~~~~~~~ 288 (347)
T 1jg8_A 215 GDRDFIERARKARK-MLGGGMRQAGVLAAAGIIALTKMV-DR-LKEDHENARFLALKLKEIG--YSVN-PEDVKTNMVIL 288 (347)
T ss_dssp ECHHHHHHHHHHHH-HHTCCCSSTHHHHHHHHHHHHHSS-TT-HHHHHHHHHHHHHHHHHHT--CBCC-GGGCCSSEEEE
T ss_pred cCHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHhcC--ceec-cCCCcceEEEE
Confidence 78888776642111 122344456677777777777532 23 3445567788888887752 2111 11345677777
Q ss_pred EEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+.... ....++.+.|.++||.+.+.+...+|++ ..++++++++++++|++++++
T Consensus 289 ~~~~~~------------~~~~~~~~~l~~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 289 RTDNLK------------VNAHGFIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp ECTTSS------------SCHHHHHHHHHHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred Eccccc------------CCHHHHHHHHHHCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 663210 0125788888899999998765668886 456999999999999998764
No 149
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.92 E-value=1.2e-24 Score=217.25 Aligned_cols=328 Identities=12% Similarity=0.070 Sum_probs=214.6
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCC-CCC-eEEEeCCHHHHHHHHH
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVL 172 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~-~~~-~v~~~~sGseA~~~al 172 (474)
.+|+.|+|..+. . ..+|++++++.+++.. .+. .+.....++.++++++++ ..+ ++++++||++|++.++
T Consensus 16 ~~~~~~~~~~g~-----~-~~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~ 87 (393)
T 2huf_A 16 VTPNKLLMGPGP-----S-NAPQRVLDAMSRPILG--HLHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATL 87 (393)
T ss_dssp CCCCCEECSSSC-----C-CCCHHHHHHTTSCCCC--TTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHH
T ss_pred CCCCeEEecCCC-----C-CCCHHHHHHHHhhhcc--CCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHH
Confidence 355666654432 2 2689999998876543 121 123567788999998886 343 7999999999999999
Q ss_pred HHhHhhcCCcEEEEEeCCCCCCchh-HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEE
Q 011959 173 RLARAFTGRERIIKFEGCYHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAII 251 (474)
Q Consensus 173 ~~ar~~~~~~~ii~~~~~yhg~~~~-~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi 251 (474)
+.. ..++++|++.+++||+.... .....|..+..++... .+ ..|+++|++.+++. ++++|+
T Consensus 88 ~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~i~~~--~~~~v~ 149 (393)
T 2huf_A 88 CNL--LEDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKV-GQ-------------SLSLDEIRDALLIH--KPSVLF 149 (393)
T ss_dssp HHH--CCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TC-------------CCCHHHHHHHHHHH--CCSEEE
T ss_pred HHH--hCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCC-CC-------------CCCHHHHHHHHhcc--CCcEEE
Confidence 963 34567899999999884211 1122343222211110 00 12899999999742 467888
Q ss_pred EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEEEec
Q 011959 252 LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGR 328 (474)
Q Consensus 252 ~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~ 328 (474)
+++++|++|.+.+ +++|.++|++||++||+||+|+ + .. ...... ..+|++ +++|+++++..+|+++++
T Consensus 150 ~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~--~~~~~~--~~~d~~~~s~sK~l~g~~G~G~~~~~ 220 (393)
T 2huf_A 150 LTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGA--PMFMDR--WEIDAMYTGSQKVLGAPPGITPVSFS 220 (393)
T ss_dssp EESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTB--CCCTTT--TTCSEEECCSSSTTCCCSSCEEEEEC
T ss_pred EEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCC--Ccchhh--cCccEEEECCCcccccCCCeEEEEEC
Confidence 8888899999998 8889999999999999999985 3 11 111122 235766 567998754445999999
Q ss_pred HHHHHhhcCCC----Ccc---------------cccC-CCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHH
Q 011959 329 RDIMEMVAPAG----PMY---------------QAGT-LSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGII 385 (474)
Q Consensus 329 ~~i~~~~~~~~----~~~---------------~~~t-~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~ 385 (474)
+++++.+...+ +.+ ...+ .+.+..+++++.++|+.+.+ ++..++++++++++.+.|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 300 (393)
T 2huf_A 221 HRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQ 300 (393)
T ss_dssp HHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 99998876421 111 0112 23456666666678877643 4567778888888888887
Q ss_pred HHhhhcCCeeEEe-eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC----CcceEEec-C--Cc
Q 011959 386 DAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL-A--HS 456 (474)
Q Consensus 386 ~~~~~~~~~~~v~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~~~~~-~--~t 456 (474)
++ ...+..... ..+.++++.+... ....++.+.|+++ ||++.++. ...+|+++ . .+
T Consensus 301 ~~--g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~ 365 (393)
T 2huf_A 301 DA--GFELYADPKDRLSTVTTIKVPQG-------------VDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGLMGQNAT 365 (393)
T ss_dssp HT--TCCBSSCGGGBCTTEEEEECCTT-------------CCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCS
T ss_pred Hc--CCeeccCccccCCcEEEEEcCCC-------------CCHHHHHHHHHHhCCEEEecCcccccCCEEEEEcccCcCC
Confidence 75 222211100 1234666665311 0125678888865 99998763 34678876 3 57
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011959 457 SDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 457 ~e~i~~~l~~l~~~~~~ 473 (474)
++++++++++|++++++
T Consensus 366 ~e~i~~~~~~l~~~~~~ 382 (393)
T 2huf_A 366 TERVDRVLQVFQEAVAA 382 (393)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998864
No 150
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.92 E-value=1.6e-24 Score=221.55 Aligned_cols=335 Identities=14% Similarity=0.034 Sum_probs=223.3
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc----C--CC-C--CCCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHH
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG----T--SF-G--APCLLENVLAEMVISAVP-SIEMVRFVNSGTEA 167 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~----~--~~-~--~~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA 167 (474)
+..|+|. +.+|+.++.+.+++.++++.. . .+ + .......++.++++++++ ..++|++++|++++
T Consensus 67 ~~iyld~------~~~g~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a 140 (465)
T 3e9k_A 67 NAIYFLG------NSLGLQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVN 140 (465)
T ss_dssp BCEECBT------TTSCCEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHH
T ss_pred CeEEecC------CccCCChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHH
Confidence 4556662 457877888888887776541 1 11 1 122445677888888876 46799999999999
Q ss_pred HHHHHHHhHhh-cCCcEEEEEeCCCCCCchhHH---HhcCCCCcc--CC-CCCCCCCCCCCCCceEEccCCCHHHHHHHH
Q 011959 168 CMGVLRLARAF-TGRERIIKFEGCYHGHADPFL---VKAGSGVAT--LG-LPDSPGVPKGATYETLTAPFNDVSALENLF 240 (474)
Q Consensus 168 ~~~al~~ar~~-~~~~~ii~~~~~yhg~~~~~~---~~~g~~~~~--~~-~~~~~g~~~~~~~~~~~~~~~d~~~le~~l 240 (474)
+..+++..... ..+++||+.+++||+...... ...|..+.. +. .+..... .-|+++|++.+
T Consensus 141 l~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~------------~~d~~~l~~~i 208 (465)
T 3e9k_A 141 LHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEE------------TLRIEDILEVI 208 (465)
T ss_dssp HHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCS------------SCCHHHHHHHH
T ss_pred HHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCC------------ccCHHHHHHHH
Confidence 99999853111 235679999999988554332 223433210 00 0110000 01799999999
Q ss_pred hcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCC
Q 011959 241 ENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG 318 (474)
Q Consensus 241 ~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~ 318 (474)
+++.+++++|++++++|++|.+.+ +++|.++|++||+++|+|++|+.-. .......++ .|++ +++|.+++
T Consensus 209 ~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~~g~--~~~~~~~~~--~D~~~~s~~K~l~~ 280 (465)
T 3e9k_A 209 EKEGDSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHAVGN--VELYLHDWG--VDFACWCSYKYLNA 280 (465)
T ss_dssp HHHGGGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTTTT--SCCCHHHHT--CCEEEECSSSTTCC
T ss_pred HhcCCCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhhcCC--cCCchhhcC--CCEEEECccccccc
Confidence 754347899999999999999998 9999999999999999999995210 011222233 4554 67899964
Q ss_pred C-cceEEEEecHHHHHhhcCCCCccccc----------------------CCCCChHHHHHHHHHHHHhcC---CCHHHH
Q 011959 319 G-LPVGAYGGRRDIMEMVAPAGPMYQAG----------------------TLSGNPLAMTAGIHTLKRLKE---PGTYEY 372 (474)
Q Consensus 319 G-~~iG~~~~~~~i~~~~~~~~~~~~~~----------------------t~~~~~~~~aaa~aal~~~~~---~~~~~~ 372 (474)
| .++|++++++++.+.+.+....+.++ ..+.|++++++..++++.+.+ +++.++
T Consensus 281 gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~ 360 (465)
T 3e9k_A 281 GAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKK 360 (465)
T ss_dssp CTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 4 47899999998877665321110000 115677888888888887754 567777
Q ss_pred HHHHHHHHHHHHHHHhhh-------cCCee----EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEe
Q 011959 373 LNKITGELTQGIIDAGKK-------AGHAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF 441 (474)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~-------~~~~~----~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v 441 (474)
..++.+++.+.|++.... .++.. +....|.++++.+... ..++.+.|.++||++
T Consensus 361 ~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~~---------------~~~l~~~L~~~Gi~v 425 (465)
T 3e9k_A 361 SVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSVP---------------NKDVFQELEKRGVVC 425 (465)
T ss_dssp HHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECCT---------------TCCHHHHHHTTTEEC
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecCC---------------HHHHHHHHHHCCEEE
Confidence 888888888888775211 12111 1123477888876411 135788899999998
Q ss_pred cccCCcceEEe---cCCcHHHHHHHHHHHHHHHhh
Q 011959 442 APSQFEAGFTS---LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 442 ~~~~~~~~~~~---~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.......+|++ +..|++|+++++++|++++++
T Consensus 426 ~~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~ 460 (465)
T 3e9k_A 426 DKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDS 460 (465)
T ss_dssp EEETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC
T ss_pred ecCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHh
Confidence 86655677874 567999999999999999864
No 151
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.92 E-value=8.8e-24 Score=217.82 Aligned_cols=332 Identities=12% Similarity=0.092 Sum_probs=208.9
Q ss_pred CCHHHHHHHHHHHHhc---C--CCC---CCCHHHHHHHHHHHhhCC---CCCeEEEeCCHHHHHHHHHHHhHhh-cCCcE
Q 011959 116 ADDQVLAALGETMKKG---T--SFG---APCLLENVLAEMVISAVP---SIEMVRFVNSGTEACMGVLRLARAF-TGRER 183 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~---~--~~~---~~~~~~~~la~~l~~~~~---~~~~v~~~~sGseA~~~al~~ar~~-~~~~~ 183 (474)
.++++++++.+.+... . .|+ +..+++.++++++.+..+ ..++|++++||++|+..+++.. . ..++.
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l--~~~~gd~ 184 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLL--IRNEKDG 184 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHH--CCSTTEE
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHH--cCCCCCE
Confidence 4677888888888762 1 122 234678888888876543 4689999999999999999942 2 35678
Q ss_pred EEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC---CCCeEEEEEccccCCCC
Q 011959 184 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSG 260 (474)
Q Consensus 184 ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~G 260 (474)
|++.+++|+++... +...|..+..+++....++ ..|+++|++.+++. ..++++|+++.++|++|
T Consensus 185 Vlv~~p~y~~~~~~-~~~~g~~~~~~~~~~~~~~------------~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG 251 (500)
T 3tcm_A 185 ILVPIPQYPLYSAS-IALHGGALVPYYLNESTGW------------GLETSDVKKQLEDARSRGINVRALVVINPGNPTG 251 (500)
T ss_dssp EEEEESCCTHHHHH-HHHTTCEEEEEECBTTTTS------------BCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTC
T ss_pred EEEeCCCcHhHHHH-HHHcCCEEEEEecccccCC------------CCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCc
Confidence 88889998875443 3334443222111111000 12899999998742 22566776666678889
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC-CCc-cc----cccCC-C--Cc-ee--ehhhhc-C-CCcceEEE
Q 011959 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA-YGG-AQ----EYFGV-T--PD-LT--TLGKII-G-GGLPVGAY 325 (474)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g-~~~-~~----~~~g~-~--pd-i~--t~sK~l-~-~G~~iG~~ 325 (474)
.+.+.++ +++|.++|++||++||+||+|.++ ..+ ..+ .. ..++. . .+ ++ +|||++ | +|+|+||+
T Consensus 252 ~~~s~~~-l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~ 330 (500)
T 3tcm_A 252 QVLAEEN-QYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYF 330 (500)
T ss_dssp CCCCHHH-HHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEE
T ss_pred ccCCHHH-HHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEE
Confidence 8887665 999999999999999999999877 432 111 11 12221 1 22 33 899999 5 69999999
Q ss_pred Ee---cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHH-----------hcC-CCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 326 GG---RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-----------LKE-PGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 326 ~~---~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----------~~~-~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
++ ++++++.+.. . ...+++.++++++++..+|+. .+. +.+.++++++++++.+.|+++
T Consensus 331 ~~~~~~~~~~~~l~~---~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~--- 403 (500)
T 3tcm_A 331 EITGFSAPVREQIYK---I-ASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKL--- 403 (500)
T ss_dssp EEESCCTTHHHHHHH---H-HHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred EEeCCCHHHHHHHHH---H-HhcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 87 8888888763 1 123566788888888877752 111 344555666666666666543
Q ss_pred cCCeeEEeeece-eEEEEEecCCCcCcccc--cccchHHHHHHHHHHHHCCeEecccC-------CcceEEecCCcHHHH
Q 011959 391 AGHAICGGYISG-MFGFFFTEGPVYNFEDA--KKSETTKFARFYRGMLEEGVYFAPSQ-------FEAGFTSLAHSSDDI 460 (474)
Q Consensus 391 ~~~~~~v~~~g~-~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~Gv~v~~~~-------~~~~~~~~~~t~e~i 460 (474)
+........|. ++++.+..+. ...+. ..........+.+.|.++||++.|+. ...+|+++.++++++
T Consensus 404 -~g~~~~~~~g~~~~~~~~~lp~--~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~~~~e~i 480 (500)
T 3tcm_A 404 -EGITCNEAEGAMYVFPQICLPQ--KAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTILPQEDKI 480 (500)
T ss_dssp -TTEECCCCCBTTEECCEECCCH--HHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESCSCTTTH
T ss_pred -CCcEEecCCeEEEEeeeecCch--hhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEECCCHHHH
Confidence 22222334444 4443332110 00000 00000111112355567799998763 235799888999999
Q ss_pred HHHHHHHHHHHhh
Q 011959 461 QHTITAAEKVLRQ 473 (474)
Q Consensus 461 ~~~l~~l~~~~~~ 473 (474)
++++++|.+++++
T Consensus 481 ~~~i~~l~~~~~~ 493 (500)
T 3tcm_A 481 PAVISRFTVFHEA 493 (500)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998764
No 152
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.92 E-value=5.4e-24 Score=209.13 Aligned_cols=308 Identities=17% Similarity=0.081 Sum_probs=205.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCC
Q 011959 116 ADDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG 193 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg 193 (474)
.+|++++++.+++.. .++. ..+...++.++++++++ ..+.+++++||++|++.+++.. ..++++|++.+++|++
T Consensus 12 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~--~~~gd~vl~~~~~~~~ 87 (352)
T 1iug_A 12 LHPKALEALARPQLH--HRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNL--FAPGERVLVPVYGKFS 87 (352)
T ss_dssp CCHHHHHHHHSCCCC--TTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHH--CCTTCEEEEEECSHHH
T ss_pred CCHHHHHHhccCCCC--ccCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhc--cCCCCeEEEEeCCchh
Confidence 579999999887642 1211 22345788888888886 3468999999999999999953 3456789999999988
Q ss_pred Cch-hHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHH
Q 011959 194 HAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272 (474)
Q Consensus 194 ~~~-~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l 272 (474)
... ..+...|..+..++... .+. .|+++|++ +++++|++++++|++|.+.+ +++|
T Consensus 88 ~~~~~~~~~~g~~~~~v~~~~-~~~-------------~d~~~l~~------~~~~~v~~~~~~nptG~~~~----l~~i 143 (352)
T 1iug_A 88 ERFYEIALEAGLVVERLDYPY-GDT-------------PRPEDVAK------EGYAGLLLVHSETSTGALAD----LPAL 143 (352)
T ss_dssp HHHHHHHHHTTCEEEEEECCT-TCC-------------CCTTTSCC------SSCSEEEEESEETTTTEECC----HHHH
T ss_pred HHHHHHHHHcCCceEEEeCCC-CCC-------------CCHHHHhc------cCCcEEEEEEecCCcceecC----HHHH
Confidence 641 11122343322211110 000 14555544 25678888999999999988 9999
Q ss_pred HHHHHHh--CCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCC------C--
Q 011959 273 RRITKEN--GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPA------G-- 339 (474)
Q Consensus 273 ~~l~~~~--g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~------~-- 339 (474)
.++|++| |++||+||+|+ + .. ......+ .+|++ +++|++.++.++|++++++++++.+... .
T Consensus 144 ~~l~~~~~~~~~li~D~a~~-~~~~--~~~~~~~--~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~ 218 (352)
T 1iug_A 144 ARAFKEKNPEGLVGADMVTS-LLVG--EVALEAM--GVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARE 218 (352)
T ss_dssp HHHHHHHCTTCEEEEECTTT-BTTB--CCCSGGG--TCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHH
T ss_pred HHHHHhhCCCCEEEEECCcc-ccCc--ceecccc--CeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHHH
Confidence 9999999 99999999995 3 11 1112222 35665 5789887655689999999987652210 0
Q ss_pred --Cc-ccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe-eeceeEEEEEecCCC
Q 011959 340 --PM-YQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPV 413 (474)
Q Consensus 340 --~~-~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~ 413 (474)
.. ....+++.|+.+++++.++++.+++ ++..++++++++++.+.|+++ ++....+ ..+.++++.+...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~-- 292 (352)
T 1iug_A 219 LKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEEG----GLRPVPKRFSPAVAAFYLPEG-- 292 (352)
T ss_dssp HHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT----TCEESCSSBCTTCEEEECCTT--
T ss_pred HhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCcccccccCCeEEEEEcCCC--
Confidence 00 0122345678888888888987654 356667777777777777764 2221111 1567777776321
Q ss_pred cCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecC--CcHHHHHHHHHHHHHHHhh
Q 011959 414 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLA--HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~--~t~e~i~~~l~~l~~~~~~ 473 (474)
....++.+.|.++||.+.++. ...+|+++. .|++++++++++|++++++
T Consensus 293 -----------~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 347 (352)
T 1iug_A 293 -----------VPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEE 347 (352)
T ss_dssp -----------CCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred -----------CCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHH
Confidence 012568889999999998763 346788654 5899999999999998865
No 153
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.92 E-value=2.2e-23 Score=208.76 Aligned_cols=286 Identities=13% Similarity=0.042 Sum_probs=194.5
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHH---HhcCCCCccCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLP 212 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~---~~~g~~~~~~~~~ 212 (474)
++.+...+++++++++++ .+++++++||++|++.+++.. ..++++|++.++.||+...... ...|.
T Consensus 61 ~~~~~~~~l~~~la~~~g-~~~~i~~~sG~~a~~~~l~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~-------- 129 (398)
T 2rfv_A 61 LGNPTTDALEKKLAVLER-GEAGLATASGISAITTTLLTL--CQQGDHIVSASAIYGCTHAFLSHSMPKFGI-------- 129 (398)
T ss_dssp TCCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHHH--CCTTCEEEEESSSCHHHHHHHHTHHHHTTC--------
T ss_pred CCChHHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCCcccHHHHHHHHHHHcCC--------
Confidence 367888999999999884 458888899999999999953 3456789999998887544331 22222
Q ss_pred CCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011959 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (474)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (474)
++..++.+|++++++.++. ++++|++++++|++|.+.+ +++|.++|++||++||+||+|..+
T Consensus 130 -----------~~~~v~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~ 191 (398)
T 2rfv_A 130 -----------NVRFVDAAKPEEIRAAMRP---ETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFMSP 191 (398)
T ss_dssp -----------EEEEECTTSHHHHHHHCCT---TEEEEEEESSBTTTTBCCC----HHHHHHHHHHTTCEEEEECTTTCT
T ss_pred -----------EEEEeCCCCHHHHHHhcCC---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc
Confidence 3566677799999998863 6899999999999999998 999999999999999999999743
Q ss_pred ccCCCccccccCCCCceeehhhhcC-CCcce-EEEEecHHHHH-hhcCCCCccccc-CCCCChHHHHHHHHHHHHhcCCC
Q 011959 293 RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPV-GAYGGRRDIME-MVAPAGPMYQAG-TLSGNPLAMTAGIHTLKRLKEPG 368 (474)
Q Consensus 293 r~g~~~~~~~~g~~pdi~t~sK~l~-~G~~i-G~~~~~~~i~~-~~~~~~~~~~~~-t~~~~~~~~aaa~aal~~~~~~~ 368 (474)
..+.. ..++....+.+++|.++ +|+|+ |++++++++++ .+. ...... +.+.+++.++++.++|+.+ +.
T Consensus 192 ~~~~~---~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 263 (398)
T 2rfv_A 192 YCQQP---LQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARF---VGLKDITGGCMSPFNAWLTLRGVKTL--GI 263 (398)
T ss_dssp TTCCG---GGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHH---THHHHTTCCCCCHHHHHHHHHHHTTH--HH
T ss_pred ccCCc---hhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHH---HHHHhCCCCCCCHHHHHHHHhhhhhH--HH
Confidence 11111 12343333458999998 58998 99999999887 555 222333 4577899999998888643 23
Q ss_pred HHHHHHHHHHHHHHHHHHHh----------hhcCCee----EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHH
Q 011959 369 TYEYLNKITGELTQGIIDAG----------KKAGHAI----CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 434 (474)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~----------~~~~~~~----~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 434 (474)
..++..++.+.+.+.|++.. ..++... ..++.|.++++++.+. ......+.+.+
T Consensus 264 ~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~------------~~~~~~l~~~~ 331 (398)
T 2rfv_A 264 RMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGG------------LEAGRRMINSV 331 (398)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH------------HHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCC------------HHHHHHHHHhC
Confidence 44555566666666665431 0011000 0124688888877421 12223444444
Q ss_pred HHCCeEecccC---------------------------CcceEEe--cCCcHHHHHHHHHHHHHH
Q 011959 435 LEEGVYFAPSQ---------------------------FEAGFTS--LAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 435 ~~~Gv~v~~~~---------------------------~~~~~~~--~~~t~e~i~~~l~~l~~~ 470 (474)
...|+.+.++. ...+|++ ...+++++++++++|+++
T Consensus 332 ~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~ 396 (398)
T 2rfv_A 332 ELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA 396 (398)
T ss_dssp SSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence 44466654431 2356665 556888888888888764
No 154
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.92 E-value=1.4e-23 Score=210.38 Aligned_cols=318 Identities=14% Similarity=0.097 Sum_probs=209.7
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhh
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF 178 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~ 178 (474)
++||||..+... ++ |++++++.+++..+. |+ +.....++.+.++++++ .+.+++++||++|++.+++.++ .
T Consensus 30 ~~~id~~~~~~~--~~---~~v~~a~~~~~~~~~-y~-~~~~~~~l~~~la~~~~-~~~~v~~~~Gt~a~~~~l~~~~-~ 100 (399)
T 2oga_A 30 VPFLDLKAAYEE--LR---AETDAAIARVLDSGR-YL-LGPELEGFEAEFAAYCE-TDHAVGVNSGMDALQLALRGLG-I 100 (399)
T ss_dssp BCSCCHHHHHHH--TH---HHHHHHHHHHHHHTC-CS-SSHHHHHHHHHHHHHTT-SSEEEEESCHHHHHHHHHHHTT-C
T ss_pred CcccccCcCCCC--CC---HHHHHHHHHHHhcCC-CC-CchhHHHHHHHHHHHHC-CCeEEEecCHHHHHHHHHHHhC-C
Confidence 678999887532 32 999999999987642 32 45667889999999884 4588999999999999999632 3
Q ss_pred cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCC
Q 011959 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (474)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (474)
.++++|++.+++|++.. ..+...|..+..++.....+ ..|+++|++.++. ++++|+++ ++
T Consensus 101 ~~gd~vl~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~-------------~~d~~~l~~~i~~---~~~~v~~~---n~ 160 (399)
T 2oga_A 101 GPGDEVIVPSHTYIASW-LAVSATGATPVPVEPHEDHP-------------TLDPLLVEKAITP---RTRALLPV---HL 160 (399)
T ss_dssp CTTCEEEEESSSCTHHH-HHHHHTTCEEEEECBCSSSS-------------SBCHHHHHHHCCT---TEEEECCB---CG
T ss_pred CCcCEEEECCCccHHHH-HHHHHCCCEEEEEecCCCCC-------------CcCHHHHHHhcCC---CCeEEEEe---CC
Confidence 45678999999998843 34444454332221110000 1289999998863 57777743 45
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-c-cCCCccccccCCCCceeeh----hhhcCC-CcceEEEEec-HH
Q 011959 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R-LAYGGAQEYFGVTPDLTTL----GKIIGG-GLPVGAYGGR-RD 330 (474)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r-~g~~~~~~~~g~~pdi~t~----sK~l~~-G~~iG~~~~~-~~ 330 (474)
+|.+.+ +++|.++|++||++||+||+|+.+ . .+ ..++..+|++++ ||.+++ | ++|+++++ ++
T Consensus 161 tG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~-----~~~~~~~di~~~S~~~sK~~~~~G-~~g~~~~~~~~ 230 (399)
T 2oga_A 161 YGHPAD----MDALRELADRHGLHIVEDAAQAHGARYRG-----RRIGAGSSVAAFSFYPGKNLGCFG-DGGAVVTGDPE 230 (399)
T ss_dssp GGCCCC----HHHHHHHHHHHTCEECEECTTCTTCEETT-----EETTCTTCEEEEECCTTSSSCCSS-CCEEEEESCHH
T ss_pred cCCccC----HHHHHHHHHHcCCEEEEECcccccCccCC-----eecccccCEEEEeCCCCccCCcCC-ceEEEEeCCHH
Confidence 787777 999999999999999999999633 2 22 123333687765 599996 8 99999886 78
Q ss_pred HHHhhcCC---CCc--c----cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeE-Eeee
Q 011959 331 IMEMVAPA---GPM--Y----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYI 400 (474)
Q Consensus 331 i~~~~~~~---~~~--~----~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~~~ 400 (474)
+++.+... +.. + .+.++..+++.++++.++++.++ .+.++.+++.+++++.|.++. ++... .+..
T Consensus 231 ~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~~ 305 (399)
T 2oga_A 231 LAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALAAEYLSGLAGLP---GIGLPVTAPD 305 (399)
T ss_dssp HHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHTTTCT---TCBCCCCCTT
T ss_pred HHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccCC---CccccCCCCC
Confidence 87766421 100 0 12234668899988888887553 345555666666666655421 11111 1111
Q ss_pred ceeE--EEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC---------------------------cceEE
Q 011959 401 SGMF--GFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFT 451 (474)
Q Consensus 401 g~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------------~~~~~ 451 (474)
+..+ .+.+... ...++.+.|.++||.+.+... ..+|+
T Consensus 306 ~~~~~~~~~~~~~--------------~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi 371 (399)
T 2oga_A 306 TDPVWHLFTVRTE--------------RRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSL 371 (399)
T ss_dssp EECCCSSEEEECS--------------SHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEE
T ss_pred CcceeEEEEEECC--------------CHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEc
Confidence 2221 1222111 125788899999999876431 23666
Q ss_pred e--cCCcHHHHHHHHHHHHHHHhhC
Q 011959 452 S--LAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 452 ~--~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+ ..+|++|+++++++|+++++++
T Consensus 372 ~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 372 PIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp CCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 5 4569999999999999998753
No 155
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.92 E-value=1e-23 Score=217.13 Aligned_cols=331 Identities=9% Similarity=0.022 Sum_probs=204.6
Q ss_pred CCHHHHHHHHHHHHhc-----CCCC---CCCHHHHHHHHHHHhhCC----CCCeEEEeCCHHHHHHHHHHHhHhhcCC--
Q 011959 116 ADDQVLAALGETMKKG-----TSFG---APCLLENVLAEMVISAVP----SIEMVRFVNSGTEACMGVLRLARAFTGR-- 181 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~-----~~~~---~~~~~~~~la~~l~~~~~----~~~~v~~~~sGseA~~~al~~ar~~~~~-- 181 (474)
.+.++.+++.+.+.+. ..|+ +..+++.++++++.++.+ ..++|++++|+++|+..++++ +..+
T Consensus 102 ~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~---l~~~gd 178 (498)
T 3ihj_A 102 FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKI---LVSGGG 178 (498)
T ss_dssp SCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHH---HCCCCG
T ss_pred CCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHH---HcCCCC
Confidence 3667778778777752 1122 234788899999987752 468999999999999999984 4332
Q ss_pred ---cEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCC--CeEEEEEcccc
Q 011959 182 ---ERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKG--EIAAIILEPVV 256 (474)
Q Consensus 182 ---~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~--~~a~vi~ep~~ 256 (474)
+.|++..++|..+... +...|..+..++.....++ .-|+++|++.+++... ++++|+++.++
T Consensus 179 ~~~d~Vlv~~p~y~~~~~~-~~~~g~~~v~~~~~~~~~~------------~~d~~~le~~l~~~~~~~~~k~i~l~np~ 245 (498)
T 3ihj_A 179 KSRTGVMIPIPQYPLYSAV-ISELDAIQVNYYLDEENCW------------ALNVNELRRAVQEAKDHCDPKVLCIINPG 245 (498)
T ss_dssp GGSEEEEEEESCCTHHHHH-HHHTTCEEEEEECBGGGTT------------BCCHHHHHHHHHHHTTTSEEEEEEEESSC
T ss_pred CCCCEEEEeCCCchhHHHH-HHHcCCEEEEeeccccccC------------CCCHHHHHHHHHhhhccCCCeEEEEECCC
Confidence 4788888888765433 3333432221111000000 0189999999975322 46777777777
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCC--Ccccccc--CC------CCce---eehhhhc-C-CCc
Q 011959 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAY--GGAQEYF--GV------TPDL---TTLGKII-G-GGL 320 (474)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~--~~~~~~~--g~------~pdi---~t~sK~l-~-~G~ 320 (474)
|++|.+.+.++ +++|.++|++||++||+||+|..+ ..+. ....... +. ..++ .+|||++ | +|+
T Consensus 246 NPTG~v~s~~~-l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~ 324 (498)
T 3ihj_A 246 NPTGQVQSRKC-IEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGY 324 (498)
T ss_dssp TTTCCCCCHHH-HHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSS
T ss_pred CCCCCcCCHHH-HHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCccc
Confidence 88998887666 999999999999999999999877 4321 1111110 01 1112 3799999 5 799
Q ss_pred ceEEEE---ecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHH-----------hcC-CCHHHHHHHHHHHHHHHHH
Q 011959 321 PVGAYG---GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKR-----------LKE-PGTYEYLNKITGELTQGII 385 (474)
Q Consensus 321 ~iG~~~---~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~-----------~~~-~~~~~~~~~~~~~l~~~L~ 385 (474)
|+||++ +++++++.+.. . .....+.+.+++.++.++++. +++ ....++++++.+++.+.|+
T Consensus 325 R~G~~~~~~~~~~l~~~l~~---~-~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~ 400 (498)
T 3ihj_A 325 RGGYMEVINLHPEIKGQLVK---L-LSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFN 400 (498)
T ss_dssp CCEEEEEESCCHHHHHHHHH---H-HHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEecCCHHHHHHHHH---H-HhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999997 68999888863 2 223456678888776666531 111 2334555566666666665
Q ss_pred HHhhhcCCeeEEeeece-eEEEEEecCCCcCccccc-ccchHHHHH-HHHHHHHCCeEecccC-------CcceEEecCC
Q 011959 386 DAGKKAGHAICGGYISG-MFGFFFTEGPVYNFEDAK-KSETTKFAR-FYRGMLEEGVYFAPSQ-------FEAGFTSLAH 455 (474)
Q Consensus 386 ~~~~~~~~~~~v~~~g~-~~~i~~~~~~~~~~~~~~-~~~~~~~~~-~~~~l~~~Gv~v~~~~-------~~~~~~~~~~ 455 (474)
+ ++.+......|. ++++.+..+. ..+.... ..... ... +.+.|.++||++.|+. ..++|+++.+
T Consensus 401 ~----~~g~~~~~p~gg~~~~~~l~~p~-~~~~~~~~~g~~~-~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~~~ 474 (498)
T 3ihj_A 401 Q----VPGIHCNPLQGAMYAFPRIFIPA-KAVEAAQAHQMAP-DMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTILP 474 (498)
T ss_dssp T----STTEECCCCCBSSEECCEECCCH-HHHHHHHHTTSCH-HHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEECCS
T ss_pred c----CCCcEecCCCeEEEEEEeccCch-hhhHHHHhcCCCc-HHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEeCC
Confidence 4 322222334444 4444442110 0000000 00000 122 3455567899998752 2367899889
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 011959 456 SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 456 t~e~i~~~l~~l~~~~~~ 473 (474)
+++++++++++|.+++++
T Consensus 475 ~~e~l~~~i~~L~~~~~~ 492 (498)
T 3ihj_A 475 PVEKLKTVLQKVKDFHIN 492 (498)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999998764
No 156
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.92 E-value=2e-23 Score=207.11 Aligned_cols=320 Identities=16% Similarity=0.129 Sum_probs=205.6
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC---C-----CCHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHH
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---A-----PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGV 171 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~---~-----~~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~a 171 (474)
|+|+.++ +..+|.+++++.+++.+...+. + ..+...++.++++++++ ..+++++++||++|++.+
T Consensus 3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~ 76 (382)
T 4hvk_A 3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHH
T ss_pred eecCCCc------CCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHH
Confidence 6776554 3468999999999997632111 1 13456688999999886 456899999999999999
Q ss_pred HHHhHh-h-cCCcEEEEEeCCCCCCchhHHHh--cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 172 LRLARA-F-TGRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 172 l~~ar~-~-~~~~~ii~~~~~yhg~~~~~~~~--~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
++.... . .+++.|++.++.|++........ .|..+..++... .+ .-|+++|++.+++ ++
T Consensus 77 ~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~i~~---~~ 139 (382)
T 4hvk_A 77 IIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK-YG-------------EVDVSFIDQKLRD---DT 139 (382)
T ss_dssp HHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCT-TS-------------CBCHHHHHHHCCT---TE
T ss_pred HHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCC-CC-------------CcCHHHHHHHhcc---Cc
Confidence 995321 0 45678888887887755443332 233222211110 00 0189999998863 67
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEE
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAY 325 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~ 325 (474)
++|++++++|++|.+.+ +++|.++|++||+ ||+||+|+.-.. ......++ +|++ +++|.+|+ ..+|++
T Consensus 140 ~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~~~~~--~~~~~~~~--~d~~~~s~~K~~g~-~g~g~~ 209 (382)
T 4hvk_A 140 ILVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATASVGQI--EVDVEKIG--ADMLTISSNDIYGP-KGVGAL 209 (382)
T ss_dssp EEEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTTBTTB--CCCHHHHT--CSEEEEESGGGTSC-TTCEEE
T ss_pred eEEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHhcCCC--CCCchhcC--CCEEEEeHHHhcCC-CceEEE
Confidence 89999999999999998 9999999999999 999999951110 11222233 4554 67897652 248888
Q ss_pred EecHHHHHhhcCCC----CcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe-
Q 011959 326 GGRRDIMEMVAPAG----PMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGG- 398 (474)
Q Consensus 326 ~~~~~i~~~~~~~~----~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~- 398 (474)
+++++. .+.+.. ........+.++.++++..++++.+.+ ++..++++++.+++.+.|++ .+......
T Consensus 210 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~ 283 (382)
T 4hvk_A 210 WIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK----IEESYLNGH 283 (382)
T ss_dssp EEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----STTEEECSC
T ss_pred EEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc----CCCeEEeCC
Confidence 877664 222100 001112344577888888888876543 45556666666666666653 22111111
Q ss_pred ---eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----------------------CcceEEe
Q 011959 399 ---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGFTS 452 (474)
Q Consensus 399 ---~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~~~~~ 452 (474)
..+.++.+.+... ....+.+.|.++||.+.++. ...+|++
T Consensus 284 ~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~ 349 (382)
T 4hvk_A 284 PEKRLPNNVNVRFSYI--------------EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLT 349 (382)
T ss_dssp SSSBCTTEEEEEETTC--------------CHHHHHHHHHHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEE
T ss_pred ccccCCCEEEEEECCC--------------CHHHHHHHHHHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEE
Confidence 1123555554211 12567888999999998753 2457776
Q ss_pred c--CCcHHHHHHHHHHHHHHHhh
Q 011959 453 L--AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 453 ~--~~t~e~i~~~l~~l~~~~~~ 473 (474)
+ .+|++++++++++|++++++
T Consensus 350 ~~~~~t~e~i~~~~~~l~~~~~~ 372 (382)
T 4hvk_A 350 LGRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHH
Confidence 4 46899999999999998764
No 157
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.92 E-value=7.7e-23 Score=203.20 Aligned_cols=320 Identities=15% Similarity=0.124 Sum_probs=207.7
Q ss_pred EEeccCChhhccCCCCCHHHHHHHHHHHHhcC--CCC-CC-----CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHH
Q 011959 101 YIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFG-AP-----CLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGV 171 (474)
Q Consensus 101 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~~-~~-----~~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~a 171 (474)
|+|+.++ ++.+|.|++++.+++.+.. ... +. .+...++.++++++++ ..+++++++||++|++.+
T Consensus 3 yld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~ 76 (382)
T 4eb5_A 3 YFDYTSA------KPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLA 76 (382)
T ss_dssp BCBTTTC------CCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHH
T ss_pred eeccCCC------CCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHH
Confidence 6776655 4689999999999987621 111 21 2456788889998886 356899999999999999
Q ss_pred HHHhHh-h-cCCcEEEEEeCCCCCCchhHHHh--cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCe
Q 011959 172 LRLARA-F-TGRERIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247 (474)
Q Consensus 172 l~~ar~-~-~~~~~ii~~~~~yhg~~~~~~~~--~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~ 247 (474)
++.... + .+++.|++.+++|++........ .|..+..++... .+ ..|+++|++.++. ++
T Consensus 77 ~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~i~~---~~ 139 (382)
T 4eb5_A 77 IIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK-YG-------------EVDVSFIDQKLRD---DT 139 (382)
T ss_dssp HHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT-TS-------------CBCHHHHHHHCCT---TE
T ss_pred HHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC-CC-------------ccCHHHHHHHhcC---CC
Confidence 996531 1 45678888888887754444322 232222111100 00 0279999998863 57
Q ss_pred EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEE
Q 011959 248 AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAY 325 (474)
Q Consensus 248 a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~ 325 (474)
++|++++++|++|.+.+ +++|.++|++||++ |+||+|. +.. .......+ .+|++ +++|.++. ..+|++
T Consensus 140 ~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~-~~~~~~~~--~~di~~~s~sK~~g~-~g~G~~ 209 (382)
T 4eb5_A 140 ILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQ-IEVDVEKI--GADMLTISSNDIYGP-KGVGAL 209 (382)
T ss_dssp EEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTT-BCCCHHHH--TCSEEEEETGGGTCC-SSCEEE
T ss_pred eEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCC-cccCcccc--CCCEEEeehHHhcCC-CceEEE
Confidence 88999999999999998 99999999999999 9999996 310 11111222 35665 67898652 137999
Q ss_pred EecHHHHHhhcCCCC----cccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEee
Q 011959 326 GGRRDIMEMVAPAGP----MYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399 (474)
Q Consensus 326 ~~~~~i~~~~~~~~~----~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~ 399 (474)
+++++. .+.+... .......+.++..+.++.++++.+.+ +...++++++.+++.+.|++ .+.......
T Consensus 210 ~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~ 283 (382)
T 4eb5_A 210 WIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK----IEESYLNGH 283 (382)
T ss_dssp EEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----STTEEECSC
T ss_pred EEcccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh----CCCeEEeCC
Confidence 888763 1221000 01122334566777777788877654 34455566666666666654 221111111
Q ss_pred ----eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----------------------CcceEEe
Q 011959 400 ----ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----------------------FEAGFTS 452 (474)
Q Consensus 400 ----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~~~~~ 452 (474)
.+.++++.+... ...++.+.|.++||.+.++. ...+|++
T Consensus 284 ~~~~~~~~~~~~~~~~--------------~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~ 349 (382)
T 4eb5_A 284 PEKRLPNNVNVRFSYI--------------EGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLT 349 (382)
T ss_dssp SSSBCTTEEEEEETTS--------------CHHHHHHHHHHHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEE
T ss_pred cccCCCCEEEEEeCCc--------------CHHHHHHHHHHCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEE
Confidence 255666665310 12567888889999998753 2457887
Q ss_pred cC--CcHHHHHHHHHHHHHHHhh
Q 011959 453 LA--HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 453 ~~--~t~e~i~~~l~~l~~~~~~ 473 (474)
+. .|++++++++++|++++++
T Consensus 350 ~~~~~~~~~i~~~~~~l~~~~~~ 372 (382)
T 4eb5_A 350 LGRYNTDEDVDRLLEVLPGVIER 372 (382)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 65 6999999999999998764
No 158
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.91 E-value=1.9e-23 Score=207.52 Aligned_cols=318 Identities=11% Similarity=0.063 Sum_probs=201.6
Q ss_pred EEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCC--CCeEEEeCCHHHHHHHHHHHhHh
Q 011959 100 EYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPS--IEMVRFVNSGTEACMGVLRLARA 177 (474)
Q Consensus 100 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~--~~~v~~~~sGseA~~~al~~ar~ 177 (474)
.++|+..+ .+-...++++++++. .++.+...+.++++.+++.++. .+++++++||++|++.+++.
T Consensus 29 ~v~~~~~~---~~~~~~~~~v~~a~~-------~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~--- 95 (374)
T 2aeu_A 29 ALYDLSGL---SGGFLIDEKDKALLN-------TYIGSSYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILA--- 95 (374)
T ss_dssp GCEECSSC---CCCCCCCHHHHHHHT-------STTHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH---
T ss_pred ceeeeccc---CCCCCCCHHHHHHHH-------HhcCchHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHh---
Confidence 45576654 211225788888875 2333455567788888777742 27899999999999999994
Q ss_pred hcCCcEEEEEeCCCCCCchh--HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEE-EEEcc
Q 011959 178 FTGRERIIKFEGCYHGHADP--FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAA-IILEP 254 (474)
Q Consensus 178 ~~~~~~ii~~~~~yhg~~~~--~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~-vi~ep 254 (474)
+ ++++|++.+++||++... .+...|. ++..+ .|+++|++. + +++++ |++++
T Consensus 96 ~-~gd~Vl~~~~~y~~~~~~~~~~~~~g~-------------------~~~~v--~d~~~l~~~-~---~~~~~~v~~~~ 149 (374)
T 2aeu_A 96 L-KPKKVIHYLPELPGHPSIERSCKIVNA-------------------KYFES--DKVGEILNK-I---DKDTLVIITGS 149 (374)
T ss_dssp H-CCSEEEEECSSSSCCTHHHHHHHHTTC-------------------EEEEE--SCHHHHHTT-C---CTTEEEEEECB
T ss_pred C-CCCEEEEecCCCCccHHHHHHHHHcCc-------------------EEEEe--CCHHHHHhc-C---CCccEEEEEcc
Confidence 3 778999999999986532 1222222 23333 488988876 3 36788 88888
Q ss_pred ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHH
Q 011959 255 VVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIM 332 (474)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~ 332 (474)
++|++|. ....+++|.++|++||++||+||+|..+..+...........+|++ ++||+++ |+++||++++++++
T Consensus 150 p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~-g~~~G~~~~~~~~~ 225 (374)
T 2aeu_A 150 TMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLME-GPRGGLLAGKKELV 225 (374)
T ss_dssp CTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSS-SCSCEEEEEEHHHH
T ss_pred CCCCCCC---CcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCccccc-CcceEEEEECHHHH
Confidence 8888884 2333999999999999999999999543211110000111235766 6999987 58999999999999
Q ss_pred HhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHH----HHHHHHHhhhc----CCeeEEeeeceeE
Q 011959 333 EMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGEL----TQGIIDAGKKA----GHAICGGYISGMF 404 (474)
Q Consensus 333 ~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l----~~~L~~~~~~~----~~~~~v~~~g~~~ 404 (474)
+.+.. .......+.+++.++++.++|+.+. .+..++..++.+.+ ++.|.+.+... ++....++.|.++
T Consensus 226 ~~l~~---~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~ 301 (374)
T 2aeu_A 226 DKIYI---EGTKFGLEAQPPLLAGIYRALKNFN-LERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVI 301 (374)
T ss_dssp HHHHH---HHHTTTCBCCHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEE
T ss_pred HHHHH---hhccccCCCCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEE
Confidence 88763 1111223578899999999998753 22344555555555 56666544332 2222345566665
Q ss_pred EEEEecCCCcCcccccccchHHHHHHHHHH-HHCCeEecccC-----CcceEEecCC---cHHHHHHHHHHHHHHHhh
Q 011959 405 GFFFTEGPVYNFEDAKKSETTKFARFYRGM-LEEGVYFAPSQ-----FEAGFTSLAH---SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 405 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~-----~~~~~~~~~~---t~e~i~~~l~~l~~~~~~ 473 (474)
++.-. .. . .+.....+++..+ .++||++.|+. ...+|+++.. ++++++++++.|++++++
T Consensus 302 ~~~~~-~~---~-----~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~ 370 (374)
T 2aeu_A 302 KRVYK-DD---T-----INIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVESIKM 370 (374)
T ss_dssp EEEES-SH---H-----HHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHH
T ss_pred Eeecc-cc---c-----ccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHH
Confidence 44310 00 0 0000112355444 46899998863 2357887643 233488999999888875
No 159
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.91 E-value=3.4e-23 Score=214.46 Aligned_cols=318 Identities=15% Similarity=0.089 Sum_probs=201.9
Q ss_pred CCHHHHHHHHHHHHhcCC---CC---C--CCHHHHHHHHHHHhhCCCC---CeE--EEeCCHHHHHHHHHHHhHhhcC--
Q 011959 116 ADDQVLAALGETMKKGTS---FG---A--PCLLENVLAEMVISAVPSI---EMV--RFVNSGTEACMGVLRLARAFTG-- 180 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~---~~---~--~~~~~~~la~~l~~~~~~~---~~v--~~~~sGseA~~~al~~ar~~~~-- 180 (474)
.++.+.+++.+++..... +. + ...++.+++++++++++.. +++ ++++||++|++.+++.++...+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~ 187 (514)
T 3mad_A 108 GDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARAT 187 (514)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhh
Confidence 568888888777764211 11 1 2356678889999988632 677 9999999999999998765431
Q ss_pred ----CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcccc
Q 011959 181 ----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (474)
Q Consensus 181 ----~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (474)
+++||+..++|++. ...+...|..+..++...... -|+++|++.+++ ++++|++++++
T Consensus 188 ~g~~~d~Vi~~~~~~~~~-~~~~~~~G~~v~~v~~~~~~~--------------~d~~~Le~~i~~---~~~~v~~~~~~ 249 (514)
T 3mad_A 188 KGITAPEAVVPVSAHAAF-DKAAQYFGIKLVRTPLDADYR--------------ADVAAMREAITP---NTVVVAGSAPG 249 (514)
T ss_dssp HCCSSCEEEEETTSCTHH-HHHHHHHTCEEEEECBCTTSC--------------BCHHHHHHHCCT---TEEEEEEETTC
T ss_pred cCCCCCeEEEeCccchHH-HHHHHHcCCeeEEeeeCCCCC--------------CCHHHHHHHhcc---CCEEEEEeCCC
Confidence 26788887777763 344444454332221111000 189999999873 68899999999
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-c-----cCC---CccccccCCCCceeehhhhcCCCcceEEEEe
Q 011959 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R-----LAY---GGAQEYFGVTPDLTTLGKIIGGGLPVGAYGG 327 (474)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r-----~g~---~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~ 327 (474)
+++|.+.+ +++|+++|++||++||+||+|++| . .|. .+.....|+...+.+++|.+.+|+++|++++
T Consensus 250 nptG~~~~----l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~ 325 (514)
T 3mad_A 250 YPHGVVDP----IPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILY 325 (514)
T ss_dssp TTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEE
T ss_pred CCCccccC----HHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEE
Confidence 99999988 999999999999999999999876 3 122 2333344553334467899888899999988
Q ss_pred cHHHHHhhcCC-CC-----cccccCC--CCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeE
Q 011959 328 RRDIMEMVAPA-GP-----MYQAGTL--SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAIC 396 (474)
Q Consensus 328 ~~~i~~~~~~~-~~-----~~~~~t~--~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 396 (474)
+++.+...... .. .+...++ +.+.....+..++++.+.. +++.+++.++++++++.|+++ . ++. .
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-~--g~~-~ 401 (514)
T 3mad_A 326 RRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAI-P--SLK-I 401 (514)
T ss_dssp SSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-T--TCE-E
T ss_pred eCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC-C--CeE-E
Confidence 87765443210 00 0000111 1222223344444444332 456777778888888887763 1 111 1
Q ss_pred EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-CcceEEec---CCcHHHHHHHHHHHHHHHh
Q 011959 397 GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-FEAGFTSL---AHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 397 v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-~~~~~~~~---~~t~e~i~~~l~~l~~~~~ 472 (474)
+.....++++..... ...++.+.|.++||++.... .+.++++. ..+++++++++++|+++++
T Consensus 402 ~~~~~~~~~~~~~~~--------------~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~ 467 (514)
T 3mad_A 402 LGDPLWVIAVASDEL--------------NIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVA 467 (514)
T ss_dssp SSCCSSEEEEECSSS--------------CHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHH
T ss_pred eCCCeEEEEEeCCCC--------------CHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 112233545543110 12578899999999884333 23456643 3467999999999999886
Q ss_pred h
Q 011959 473 Q 473 (474)
Q Consensus 473 ~ 473 (474)
+
T Consensus 468 ~ 468 (514)
T 3mad_A 468 Q 468 (514)
T ss_dssp H
T ss_pred H
Confidence 4
No 160
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.91 E-value=2.5e-23 Score=208.55 Aligned_cols=320 Identities=13% Similarity=0.080 Sum_probs=202.1
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHh-c-CCCC----C-CCH----HHHHHHHHHHhhCCCCCeEEEeCCHHHH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKK-G-TSFG----A-PCL----LENVLAEMVISAVPSIEMVRFVNSGTEA 167 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~-~~~~----~-~~~----~~~~la~~l~~~~~~~~~v~~~~sGseA 167 (474)
+.++|+.++ +++ +|+|++++.+++.+ . ..+. + ... ++.+++++++++++.....++++||++|
T Consensus 24 ~~~~~~~~~---~~~---~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a 97 (405)
T 2vi8_A 24 AKIELIASE---NFV---SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQA 97 (405)
T ss_dssp HSEECCTTC---CCC---CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHH
T ss_pred cceeeccCc---ccC---CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHH
Confidence 346777655 555 89999999998853 2 1110 1 112 2333456888887533344556788999
Q ss_pred HHHHHHHhHhhcCCcEEEEEeCCCCCCchhH--HHhcCCCCccCCCCCCCCCCCCCCCceEEcc------CCCHHHHHHH
Q 011959 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAP------FNDVSALENL 239 (474)
Q Consensus 168 ~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~--~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~------~~d~~~le~~ 239 (474)
++.+++.+ ..++++|++.+++|++..... +...|.+. .++.++ ..|+++|++.
T Consensus 98 ~~~a~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~-----------------~~~~~~~~~~~~~~d~~~l~~~ 158 (405)
T 2vi8_A 98 NMAVYFTV--LEHGDTVLGMNLSHGGHLTHGSPVNFSGVQY-----------------NFVAYGVDPETHVIDYDDVREK 158 (405)
T ss_dssp HHHHHHHH--CCTTCEEEEECGGGTCCTTTTCTTSHHHHHS-----------------EEEEECBCTTTCSBCHHHHHHH
T ss_pred HHHHHHHh--cCCCCEEEEecccccchhcccchhhhcccee-----------------EEEecccccccCCcCHHHHHHH
Confidence 99999964 445677888877655542211 11112100 011111 1289999999
Q ss_pred HhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCC-CCcee--ehhhhc
Q 011959 240 FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGV-TPDLT--TLGKII 316 (474)
Q Consensus 240 l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~-~pdi~--t~sK~l 316 (474)
++++ ++++|+++|.+ .|...+ +++|+++|++||++||+||+|+....+.... ..++ .+|++ ++||++
T Consensus 159 i~~~--~~~~v~~~~~~--~~~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~--~~~~~~~di~~~s~sK~~ 228 (405)
T 2vi8_A 159 ARLH--RPKLIVAAAAA--YPRIID----FAKFREIADEVGAYLMVDMAHIAGLVAAGLH--PNPVPYAHFVTTTTHKTL 228 (405)
T ss_dssp HHHH--CCSEEEECCSS--CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSS--CCSTTTCSEEEEESSSTT
T ss_pred HHhc--CCeEEEEeCCC--CCccCC----HHHHHHHHHHcCCEEEEEccccccccccCcC--CCccccCCEEEEeccccC
Confidence 8742 35677775533 243434 9999999999999999999997212211110 1111 46776 799999
Q ss_pred CCCcceEEEEecHHHHHhhcCCCCcccccCCCC-ChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011959 317 GGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG-NPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG 392 (474)
Q Consensus 317 ~~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~-~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (474)
+|+.. |++++++++++.+.. .....++++ ++..++++.++++.+.+ +++.++++++++++.+.|+++ +
T Consensus 229 ~g~~g-G~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g 300 (405)
T 2vi8_A 229 RGPRG-GMILCQEQFAKQIDK---AIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNE----G 300 (405)
T ss_dssp CCCSC-EEEEECHHHHHHHHH---HHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT----T
T ss_pred CCCCC-eEEEEcHHHHHHHHh---hhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC----C
Confidence 85433 999999999887753 111123333 56677777788887654 567778888888888888765 3
Q ss_pred CeeEE-eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----------CcceEEecC------C
Q 011959 393 HAICG-GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----------FEAGFTSLA------H 455 (474)
Q Consensus 393 ~~~~v-~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----------~~~~~~~~~------~ 455 (474)
+.... .+.+.++++.+.... .....+.+.|.++||.+.++. ...+|+++. +
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~ 368 (405)
T 2vi8_A 301 FTLVSGGTDNHLLLVDLRPQQ------------LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGF 368 (405)
T ss_dssp CEEGGGSCSSSEEEEECGGGT------------CCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTC
T ss_pred CeEecCCCCceEEEEEccCCC------------CCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCC
Confidence 22111 135777777764210 012467788889999998742 234677544 6
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 011959 456 SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 456 t~e~i~~~l~~l~~~~~~ 473 (474)
+++++++++++|++++++
T Consensus 369 ~~~~i~~~~~~l~~~~~~ 386 (405)
T 2vi8_A 369 GLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp CHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 899999999999998864
No 161
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.91 E-value=1.9e-24 Score=213.09 Aligned_cols=327 Identities=13% Similarity=0.074 Sum_probs=197.8
Q ss_pred CEEEe-ccCChhhccCCC-CCHHHHHHHHHHHHhc-----CCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHH
Q 011959 99 NEYID-YVGSWGPAIIGH-ADDQVLAALGETMKKG-----TSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGV 171 (474)
Q Consensus 99 ~~~iD-~~~~~~~~~lG~-~~p~v~~a~~~~~~~~-----~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~a 171 (474)
|+|+| |.++ ++||+ .||.+.+++.++++.. .....+.....+|.+++++++ +.+..++++||++|++.+
T Consensus 3 ~~~~~~~~~~---~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~-~~~~~i~~~~G~~a~~~a 78 (357)
T 3lws_A 3 NRLRTSFQQT---TGQISGHGKRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVL-GMDDAVFFPSGTMAQQVA 78 (357)
T ss_dssp CHHHHHHHTC---SEESSBSSCCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHH-TCSEEEEESCHHHHHHHH
T ss_pred chhhhHHHhh---cccccCCCCCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHh-CCCcEEEecCcHHHHHHH
Confidence 34566 3344 78888 4888888888877651 111123355678888888877 456677779999999999
Q ss_pred HHHhHhhcCCcEEEEEeCCCCCCchh---HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeE
Q 011959 172 LRLARAFTGRERIIKFEGCYHGHADP---FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIA 248 (474)
Q Consensus 172 l~~ar~~~~~~~ii~~~~~yhg~~~~---~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 248 (474)
++.... .+++++|+.++.+|..... .....|..+..+ +...+ .-|+++|++. . +++
T Consensus 79 l~~~~~-~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v--~~~~~-------------~~d~~~l~~~----~-~~~ 137 (357)
T 3lws_A 79 LRIWSD-ETDNRTVAYHPLCHLEIHEQDGLKELHPIETILV--GAADR-------------LMTLDEIKAL----P-DIA 137 (357)
T ss_dssp HHHHHH-HHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEEC--SCTTS-------------CCCHHHHHTC----C-SCS
T ss_pred HHHHhh-cCCCcEEEecccceeeeeccchhhhccCcEEEEe--cCCCC-------------CcCHHHHhcC----c-Ccc
Confidence 985322 2222266666766653322 122223322211 11111 1178888765 1 367
Q ss_pred EEEEccccCCC-CcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc--ccCCCccccccCCCCce--eehhhhcCCCcce
Q 011959 249 AIILEPVVGNS-GFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF--RLAYGGAQEYFGVTPDL--TTLGKIIGGGLPV 322 (474)
Q Consensus 249 ~vi~ep~~~~~-G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~--r~g~~~~~~~~g~~pdi--~t~sK~l~~G~~i 322 (474)
+|++++++|++ |.+.+ .+.+++|.++|++||++||+||+|. +. ..+.... . +....|+ .++||++++. ..
T Consensus 138 ~v~~~~p~np~~G~~~~-~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~-~-~~~~~d~~~~s~sK~~~~~-~g 213 (357)
T 3lws_A 138 CLLLELPQREIGGVAPA-FSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAA-E-IAGLFDSIYISFYKGLGGI-AG 213 (357)
T ss_dssp EEEEESSBGGGTSBCCC-HHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHH-H-HHTTSSEEEEESSSTTCCS-SC
T ss_pred eEEEEcccccCCceeCC-HHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChH-H-HHhcCCEEEEeccccCCCC-ce
Confidence 88888887775 66554 5559999999999999999999985 11 1121111 1 1112344 4899999532 22
Q ss_pred EEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeE-Eeeec
Q 011959 323 GAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYIS 401 (474)
Q Consensus 323 G~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~~~g 401 (474)
|++++++++++.+......+..+.+. ....++++.++|+... +..++..++.+++.+.|+++ .++... .+..+
T Consensus 214 g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~ 287 (357)
T 3lws_A 214 AILAGPAAFCQTARIWKRRYGGDLIS-LYPYIVSADYYYELRK--DRMGQYYEQAKQLAEQFNAL---PGVHTTPEVPVS 287 (357)
T ss_dssp EEEEECHHHHHHHHHHHHHTTCCCSC-CHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHTS---TTEEEESSSCSS
T ss_pred EEEEcCHHHHHHHHHHHHHhcCCccc-chHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhC---CCCeeccCCCcc
Confidence 88899999988875211111222222 3334455556776532 23344567777777777653 122221 24567
Q ss_pred eeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC---c--ceEEe-----cCCcHHHHHHHHHHHHHHH
Q 011959 402 GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---E--AGFTS-----LAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 402 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---~--~~~~~-----~~~t~e~i~~~l~~l~~~~ 471 (474)
.++++.+... .......+.+.|.++||++.++.. + .++++ +..+++++++++++|.+++
T Consensus 288 ~~~~~~~~~~-----------~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 288 NMFHLHFDGQ-----------AADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp SEEEEEEESC-----------HHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred eEEEEEecCC-----------hHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 7777777431 112235778889999999988731 2 34553 3468999999999998875
No 162
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.91 E-value=8.3e-23 Score=203.75 Aligned_cols=285 Identities=14% Similarity=0.089 Sum_probs=189.2
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
++++...++++.++++++.. +.++++||++|++.+++.+ ..++++|++.++.||+...........
T Consensus 49 ~~~~~~~~l~~~la~~~~~~-~~i~~~sGt~a~~~~~~~~--~~~g~~vl~~~~~~~~~~~~~~~~~~~----------- 114 (386)
T 1cs1_A 49 RGNPTRDVVQRALAELEGGA-GAVLTNTGMSAIHLVTTVF--LKPGDLLVAPHDCYGGSYRLFDSLAKR----------- 114 (386)
T ss_dssp TCCHHHHHHHHHHHHHHTCS-EEEEESSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHHHTT-----------
T ss_pred CCCccHHHHHHHHHHHhCCC-cEEEeCCHHHHHHHHHHHH--hCCCCEEEEecCCcHhHHHHHHHHHHh-----------
Confidence 35566677778888777533 5566678899999999953 445678999999998743322111110
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~ 294 (474)
.+.++..++.+|+++|++.++. ++++|++++++|++|.+.+ +++|+++|++||++||+||+|+++ ..
T Consensus 115 -----~g~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~ 182 (386)
T 1cs1_A 115 -----GCYRVLFVDQGDEQALRAALAE---KPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPALQ 182 (386)
T ss_dssp -----TSCEEEEECTTCHHHHHHHHHT---CCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTTTC
T ss_pred -----cCCEEEEeCCCCHHHHHHhhcc---CCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 1124566777799999999973 5789999999999999998 999999999999999999999876 32
Q ss_pred CCCccccccCCCCceeehhhhcCC-Ccce-EEEEecH-HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHH
Q 011959 295 AYGGAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGRR-DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (474)
Q Consensus 295 g~~~~~~~~g~~pdi~t~sK~l~~-G~~i-G~~~~~~-~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (474)
.. . .++....+.+++|++++ |.++ |++++++ ++++.+.. .....+.+.++++++++.++++.+ +...+
T Consensus 183 -~~--~-~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 253 (386)
T 1cs1_A 183 -NP--L-ALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAW---WANNIGVTGGAFDSYLLLRGLRTL--VPRME 253 (386)
T ss_dssp -CG--G-GGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH---HHHHHTCBCCHHHHHHHHHHHTTH--HHHHH
T ss_pred -Cc--c-ccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhcccHH--HHHHH
Confidence 11 1 23433334489999984 5676 9998886 78887762 223334567899888877777543 23445
Q ss_pred HHHHHHHHHHHHHHHHhh--h--cCCee----------EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC
Q 011959 372 YLNKITGELTQGIIDAGK--K--AGHAI----------CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 437 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~--~--~~~~~----------~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 437 (474)
++.++.+.+.+.|+++.. + ++... ..++.|.++.+.+.+. ...+.+.|.++
T Consensus 254 ~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~ 318 (386)
T 1cs1_A 254 LAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD---------------EQTLRRFLGGL 318 (386)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC---------------HHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC---------------HHHHHHHHHhC
Confidence 555666666666554210 0 01000 0134588888877421 14566777888
Q ss_pred CeEeccc--C----------------------------CcceEEe--cCCcHHHHHHHHHHHHHH
Q 011959 438 GVYFAPS--Q----------------------------FEAGFTS--LAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 438 Gv~v~~~--~----------------------------~~~~~~~--~~~t~e~i~~~l~~l~~~ 470 (474)
||++.+. + ...+|++ ...++++++.+.+.|+++
T Consensus 319 gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~ 383 (386)
T 1cs1_A 319 SLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAA 383 (386)
T ss_dssp SSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence 9988631 1 2356765 445667777777766654
No 163
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.91 E-value=4.5e-24 Score=213.66 Aligned_cols=330 Identities=15% Similarity=0.080 Sum_probs=188.4
Q ss_pred EEEEcCCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhc--CCCC------CCCHHHHHHHHHHHhhCC-CCCeEEEeC
Q 011959 92 HMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKG--TSFG------APCLLENVLAEMVISAVP-SIEMVRFVN 162 (474)
Q Consensus 92 ~~~d~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~~------~~~~~~~~la~~l~~~~~-~~~~v~~~~ 162 (474)
+.++.++..|+|+.++ +..+|++++++.+++.+. .... ...+...++.++++++++ ..+++++++
T Consensus 14 ~~~~~~~~iyld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ 87 (400)
T 3vax_A 14 LVPRGSHMTYLDAAAT------TRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTS 87 (400)
T ss_dssp --------CCCCCCCC------SSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEES
T ss_pred CCcccCCcEEecCCCC------CCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeC
Confidence 4456677788998765 246899999999998753 1111 123456789999999986 457999999
Q ss_pred CHHHHHHHHHHHhHhh--cCCc-EEEEEeCCCCCCchhHHHh--cCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHH
Q 011959 163 SGTEACMGVLRLARAF--TGRE-RIIKFEGCYHGHADPFLVK--AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237 (474)
Q Consensus 163 sGseA~~~al~~ar~~--~~~~-~ii~~~~~yhg~~~~~~~~--~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le 237 (474)
||++|++.+++....+ .+++ .|++.++.|++........ .|..+..++... .+ .-|+++|+
T Consensus 88 g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~ 153 (400)
T 3vax_A 88 GATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP-SG-------------RISVEGVM 153 (400)
T ss_dssp CHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT-TC-------------CCCHHHHH
T ss_pred CHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC-CC-------------CcCHHHHH
Confidence 9999999999954211 3456 7877777776644433332 232222111110 00 01799999
Q ss_pred HHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhh
Q 011959 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKI 315 (474)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~ 315 (474)
+.+++ ++++|++++++|++|.+.+ +++|.++|++||++||+||+|+.... ..+..+. +|++ +++|.
T Consensus 154 ~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~~~~~----~~~~~~~-~d~~~~s~~K~ 221 (400)
T 3vax_A 154 ERLRP---DTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQGYGKV----PGDLTTP-IDMISISGHKI 221 (400)
T ss_dssp TTCCT---TEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTTTTTS----GGGGGSC-CSEEEEETGGG
T ss_pred HhcCC---CceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhhcCCC----CcChhhc-CcEEEEeHHHh
Confidence 88863 6899999999999999998 99999999999999999999962111 1112233 7776 56795
Q ss_pred cCCCcceEEEE-ecHH-HH---HhhcCC----CCcccccCCCCChHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHH
Q 011959 316 IGGGLPVGAYG-GRRD-IM---EMVAPA----GPMYQAGTLSGNPLAMTAGIHTLKRLKE--PGTYEYLNKITGELTQGI 384 (474)
Q Consensus 316 l~~G~~iG~~~-~~~~-i~---~~~~~~----~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L 384 (474)
++ +.++|+++ ++++ +. ..+.+. .........+.++.++++..++++.+.+ ++..++++++.+++.+.|
T Consensus 222 ~g-~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L 300 (400)
T 3vax_A 222 GA-PKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGL 300 (400)
T ss_dssp TS-CSSCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CCceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 54 33588888 7762 11 112210 0001122345677788877788887654 456666667777777766
Q ss_pred HHHhhhcCCeeEEe---eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----------------
Q 011959 385 IDAGKKAGHAICGG---YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------------- 445 (474)
Q Consensus 385 ~~~~~~~~~~~~v~---~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------- 445 (474)
+ . . ++....+ ..+.++.+.+... ....+.+.|. +||.+.++.
T Consensus 301 ~-~-~--~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~L~-~gi~v~~g~~~~~~~~~~~~~~~~~ 361 (400)
T 3vax_A 301 A-S-T--SFQVNGDQDHVVPHILNLSFEDV--------------DAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAM 361 (400)
T ss_dssp T-T-T--TCEECSCTTSBCTTEEEEECTTC--------------CHHHHHHHHH-HHHHHTTTTEEEEEEECCHHHHHTT
T ss_pred C-C-C--CEEEeCCcccCCCCEEEEEeCCC--------------CHHHHHHHHh-cCcEEEecccccCCCCCccHHHHHc
Confidence 5 2 1 2211111 1234555554311 1256778888 999887642
Q ss_pred -------CcceEEec---CCcHHHHHHHHHHHHHHHhh
Q 011959 446 -------FEAGFTSL---AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 446 -------~~~~~~~~---~~t~e~i~~~l~~l~~~~~~ 473 (474)
...+|+++ ..|++++++++++|++++++
T Consensus 362 g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 362 GLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp TCCHHHHTSEEEEEEEEC--------------------
T ss_pred CCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 24567765 56899999999999998764
No 164
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.91 E-value=1.7e-22 Score=203.83 Aligned_cols=313 Identities=14% Similarity=0.055 Sum_probs=182.1
Q ss_pred CHHHHHHHHHHHHhcCCCCC----------CCHHHHHHH-HHHHhhCCCCCeE-EEeCCHHHHHHHHHHHhHhhcCCcEE
Q 011959 117 DDQVLAALGETMKKGTSFGA----------PCLLENVLA-EMVISAVPSIEMV-RFVNSGTEACMGVLRLARAFTGRERI 184 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~~~~----------~~~~~~~la-~~l~~~~~~~~~v-~~~~sGseA~~~al~~ar~~~~~~~i 184 (474)
+|+|++++.+++.+...+++ ..+...+++ +++++.+ +.+.+ ++++||++|++.+++.+ ..+++.|
T Consensus 45 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~v~~~~Gs~a~~~al~~~--~~~gd~V 121 (425)
T 3ecd_A 45 SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKRLF-NAGHANVQPHSGAQANGAVMLAL--AKPGDTV 121 (425)
T ss_dssp CHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHHHH-TCSEEECCCSSHHHHHHHHHHHH--CCTTCEE
T ss_pred CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHHHh-CCCCceeecCchHHHHHHHHHHc--cCCCCEE
Confidence 99999999998853211111 112345555 6666666 45555 45999999999999963 4567889
Q ss_pred EEEeCCCCCCc-hhHH-HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcc
Q 011959 185 IKFEGCYHGHA-DPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 262 (474)
Q Consensus 185 i~~~~~yhg~~-~~~~-~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i 262 (474)
++.+++|++.. .+.. ...|..+....++..+. . ..-|+++|++.+++. ++++|++++.++ |..
T Consensus 122 i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~---~~~d~~~l~~~i~~~--~~~~v~~~~~~~--~~~ 186 (425)
T 3ecd_A 122 LGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRD--------T---MLIDYDQVEALAQQH--KPSLIIAGFSAY--PRK 186 (425)
T ss_dssp EEECC------------------CEEEEECCCTT--------T---SSCCHHHHHHHHHHH--CCSEEEEECSCC--CSC
T ss_pred EEcccccccceecchhhhhcccceeeeecCCCcc--------c---CccCHHHHHHHHhhc--CCcEEEEccccC--CCc
Confidence 99999988732 2221 12222111101110000 0 011899999999743 467777774322 334
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEEEec-HHHHHhhcC
Q 011959 263 APKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGR-RDIMEMVAP 337 (474)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~-~~i~~~~~~ 337 (474)
.+ +++|+++|++||++||+||+| .|+ +.+..... +. .+|++ ++||++ +|+++||++++ +++.+.+..
T Consensus 187 ~~----l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~--~~-~~di~~~s~sK~l-~g~~~g~~~~~~~~~~~~~~~ 258 (425)
T 3ecd_A 187 LD----FARFRAIADSVGAKLMVDMAHIAGVIAAGRHANP--VE-HAHVVTSTTHKTL-RGPRGGFVLTNDEEIAKKINS 258 (425)
T ss_dssp CC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCG--GG-TCSEEEEESSGGG-CCCSCEEEEESCHHHHHHHHH
T ss_pred CC----HHHHHHHHHHcCCEEEEECcChHhhhhcccccCc--hh-cCcEEEecCCccc-CCCCcEEEEeCCHHHHHHHHh
Confidence 44 899999999999999999996 666 54433221 11 14665 688999 56789999888 567766652
Q ss_pred CCCcccccCCCCChHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE-eeeceeEEEEEecCCC
Q 011959 338 AGPMYQAGTLSGNPLAMTAGIHTLKRLK-E--PGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFFFTEGPV 413 (474)
Q Consensus 338 ~~~~~~~~t~~~~~~~~aaa~aal~~~~-~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-~~~g~~~~i~~~~~~~ 413 (474)
....+.+.+.++..++++.+++.... + +++.++++++.+++++.|.+. ++.... .+.+.++++.+....
T Consensus 259 --~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~~~~~~- 331 (425)
T 3ecd_A 259 --AVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG----GVDLVTGGTDNHLLLVDLRPKG- 331 (425)
T ss_dssp --HHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEECGGGT-
T ss_pred --hhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC----CCeeccCCCCceEEEEEeCCCC-
Confidence 11122122334444444444554332 2 367777888888888888763 322111 135667777664211
Q ss_pred cCcccccccchHHHHHHHHHHHHCCeEec----ccC------CcceEEe------cCCcHHHHHHHHHHHHHHHhh
Q 011959 414 YNFEDAKKSETTKFARFYRGMLEEGVYFA----PSQ------FEAGFTS------LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~------~~~~~~~------~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.....+.+.|.++||++. |+. ...+|++ ..++++++++++++|++++++
T Consensus 332 -----------~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~ 396 (425)
T 3ecd_A 332 -----------LKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEA 396 (425)
T ss_dssp -----------CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred -----------CCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhc
Confidence 112467778889999998 331 1235653 334699999999999998764
No 165
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.91 E-value=1.4e-23 Score=209.68 Aligned_cols=314 Identities=13% Similarity=0.123 Sum_probs=210.0
Q ss_pred CCHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCC-CCC-eEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCC
Q 011959 116 ADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVP-SIE-MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYH 192 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~-~~~-~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yh 192 (474)
.++++++++.+++.. .+. ++.....++.+.++++++ ..+ ++++++||++|++.+++.. ..++++|++.+++|+
T Consensus 29 ~~~~v~~a~~~~~~~--~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~--~~~gd~vl~~~~~~~ 104 (396)
T 2ch1_A 29 CSKRVLTAMTNTVLS--NFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL--LEEGDRVLIAVNGIW 104 (396)
T ss_dssp CCHHHHHHTTSCCCC--TTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH--CCTTCEEEEEESSHH
T ss_pred CCHHHHHHhcccccc--CCChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHh--cCCCCeEEEEcCCcc
Confidence 478888887765422 121 122446788999998886 345 7999999999999999953 445678999999999
Q ss_pred CCch-hHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHH
Q 011959 193 GHAD-PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNA 271 (474)
Q Consensus 193 g~~~-~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~ 271 (474)
+... ......|..+..++... .+ ..|+++|++.++++ ++++|++++++|++|.+.+ +++
T Consensus 105 ~~~~~~~~~~~g~~~~~v~~~~-~~-------------~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----~~~ 164 (396)
T 2ch1_A 105 AERAVEMSERYGADVRTIEGPP-DR-------------PFSLETLARAIELH--QPKCLFLTHGDSSSGLLQP----LEG 164 (396)
T ss_dssp HHHHHHHHHHTTCEEEEEECCT-TS-------------CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTT
T ss_pred cHHHHHHHHHcCCceEEecCCC-CC-------------CCCHHHHHHHHHhC--CCCEEEEECCCCCCceecC----HHH
Confidence 8531 13333444332211110 00 12899999999742 4678888888889999998 888
Q ss_pred HHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCceee--hhhhcCCCcceEEEEecHHHHHhhcCCC----Ccc--
Q 011959 272 IRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRDIMEMVAPAG----PMY-- 342 (474)
Q Consensus 272 l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~~~i~~~~~~~~----~~~-- 342 (474)
|.++|++||++||+||+|. + .. ..... ...+|+++ ++|.++++.++|++++++++++.+...+ ..+
T Consensus 165 i~~l~~~~~~~li~Dea~~-~g~~--~~~~~--~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (396)
T 2ch1_A 165 VGQICHQHDCLLIVDAVAS-LCGV--PFYMD--KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWD 239 (396)
T ss_dssp HHHHHHHTTCEEEEECTTT-BTTB--CCCTT--TTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGC
T ss_pred HHHHHHHcCCEEEEEcccc-ccCC--ccchh--hcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEec
Confidence 9999999999999999996 3 11 11112 22367765 5599987677899999999888775311 000
Q ss_pred --------------cccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe--eecee
Q 011959 343 --------------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG--YISGM 403 (474)
Q Consensus 343 --------------~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~--~~g~~ 403 (474)
....++.+..++.++.++|+.+.+ ++..++++++++++.+.|+++ ...+..... ..+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~ 317 (396)
T 2ch1_A 240 LLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM--GLDIFVKDPRHRLPTV 317 (396)
T ss_dssp HHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH--TCCBSSCSGGGBCTTE
T ss_pred hHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CCeeccCCccccCCce
Confidence 112234577788888888887633 456777888888888888776 222211100 12346
Q ss_pred EEEEEecCCCcCcccccccchHHHHHHHHHHHHC-CeEecccC----CcceEEec---CCcHHHHHHHHHHHHHHHhh
Q 011959 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE-GVYFAPSQ----FEAGFTSL---AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~----~~~~~~~~---~~t~e~i~~~l~~l~~~~~~ 473 (474)
+++.+... ....++.+.|+++ ||.+.++. ...+|+++ ..+++++++++++|++++++
T Consensus 318 ~~~~~~~~-------------~~~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~ 382 (396)
T 2ch1_A 318 TGIMIPKG-------------VDWWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKA 382 (396)
T ss_dssp EEEECCTT-------------CCHHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCC-------------CCHHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHH
Confidence 66665311 0125688888875 99998753 34678876 35899999999999998864
No 166
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.91 E-value=1.1e-22 Score=205.76 Aligned_cols=333 Identities=14% Similarity=0.072 Sum_probs=199.0
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCC---CC-----CHHHHHHHHHHHhhCC-CCCeEEEeCCHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFG---AP-----CLLENVLAEMVISAVP-SIEMVRFVNSGTEA 167 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~---~~-----~~~~~~la~~l~~~~~-~~~~v~~~~sGseA 167 (474)
+|..|||+.++ ++.+|.+++++.+++.+...+. +. .+...++.++++++++ ..++++|++||++|
T Consensus 17 ~~~~~Ld~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a 90 (432)
T 3a9z_A 17 NRKVYMDYNAT------TPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTES 90 (432)
T ss_dssp -CCEECBTTTC------CCCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHH
T ss_pred CCcEEeeCCcc------CCCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHH
Confidence 56788887665 2579999999999987632111 11 1234688888888886 45789999999999
Q ss_pred HHHHHHHhH-hh-----cCCcEEEEEeCCCCCCch---------------hHH-HhcCCCCccCCCCCCCCCCCCCCCce
Q 011959 168 CMGVLRLAR-AF-----TGRERIIKFEGCYHGHAD---------------PFL-VKAGSGVATLGLPDSPGVPKGATYET 225 (474)
Q Consensus 168 ~~~al~~ar-~~-----~~~~~ii~~~~~yhg~~~---------------~~~-~~~g~~~~~~~~~~~~g~~~~~~~~~ 225 (474)
++.+++.+. .+ ..+++|++.+++||++.. ..+ ...|..+..++.....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~--------- 161 (432)
T 3a9z_A 91 NNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNG--------- 161 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTS---------
T ss_pred HHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccC---------
Confidence 999999652 11 256889999999988520 011 11233222211110001
Q ss_pred EEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhC----------CEEEEeccccCcccC
Q 011959 226 LTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG----------ALLIFDEVMTGFRLA 295 (474)
Q Consensus 226 ~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g----------~llI~DEv~~g~r~g 295 (474)
..|+++|++.++ +++++|++++++|++|.+.+ +++|.++|++|| ++||+||+|..+..
T Consensus 162 ----~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~- 229 (432)
T 3a9z_A 162 ----QVEVEDILAAVR---PTTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKR- 229 (432)
T ss_dssp ----SCCHHHHHHTCC---TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS-
T ss_pred ----CcCHHHHHHhcc---CCceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchhhhCCc-
Confidence 027899988876 36889999999999999999 889999999999 99999999953221
Q ss_pred CCccccccCCCCcee--ehhhhcCCCcceEEEEecHHH-HHhhcCCC----CcccccCCCCChHHHHHHHHHHHHhcC--
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDI-MEMVAPAG----PMYQAGTLSGNPLAMTAGIHTLKRLKE-- 366 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i-~~~~~~~~----~~~~~~t~~~~~~~~aaa~aal~~~~~-- 366 (474)
..... ...+|++ +++|.+| +++||+++++++ ...+.+.. ......+++.|+++++++.++|+.+++
T Consensus 230 -~~~~~--~~~~d~~~~s~~K~~g--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~ 304 (432)
T 3a9z_A 230 -RVDVE--DLGVDFLTIVGHKFYG--PRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENC 304 (432)
T ss_dssp -CCCHH--HHCCSEEEEEGGGTTC--CSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred -ccChh--hcCCCEEEEehhHhcC--CcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhH
Confidence 11111 1246765 5799874 579999998775 33332100 001223456788888888888887654
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh-hhcCCee---EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH----HCC
Q 011959 367 PGTYEYLNKITGELTQGIIDAG-KKAGHAI---CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML----EEG 438 (474)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~---~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~G 438 (474)
+++.++++++++++.+.|+++. ....+.. .....+.++.+.+.+... +. ..+.+.+. +.|
T Consensus 305 ~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---~~~~~~l~~i~~~~G 372 (432)
T 3a9z_A 305 ETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQL---------RG---YMVLAQCQTLLASVG 372 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECSTTC---------CH---HHHHHHCSSEECBSS
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCCCCC---------cH---HHHHHHhcCeEEecc
Confidence 5667778888888888887742 1110000 012335566666643110 11 22333221 223
Q ss_pred eEeccc------------C------CcceEEecCC--cHHHHHHHHHHHHHHHhh
Q 011959 439 VYFAPS------------Q------FEAGFTSLAH--SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 439 v~v~~~------------~------~~~~~~~~~~--t~e~i~~~l~~l~~~~~~ 473 (474)
+.+.+. + ...+|+++.. |++++++++++|++++++
T Consensus 373 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~~ 427 (432)
T 3a9z_A 373 ASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQ 427 (432)
T ss_dssp CGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 222221 1 1457887554 899999999999998764
No 167
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.90 E-value=2e-22 Score=201.22 Aligned_cols=310 Identities=14% Similarity=0.059 Sum_probs=203.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCch
Q 011959 117 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~ 196 (474)
++++++++.+++++.. + .+.....++.+.+++++ +.+++++++||++|++.+++..+ ..++++|++.+++|++..
T Consensus 19 ~~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~la~~~-~~~~~~~~~~gt~al~~~~~~~~-~~~gd~Vl~~~~~~~~~~- 93 (393)
T 1mdo_A 19 GAEELAAVKTVLDSGW-I-TTGPKNQELEAAFCRLT-GNQYAVAVSSATAGMHIALMALG-IGEGDEVITPSMTWVSTL- 93 (393)
T ss_dssp CHHHHHHHHHHHHHTC-C-SSSHHHHHHHHHHHHHH-CCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCHHHH-
T ss_pred CHHHHHHHHHHHhcCC-c-CCChHHHHHHHHHHHHh-CCCcEEEecChHHHHHHHHHHcC-CCCCCEEEeCCCccHhHH-
Confidence 5889999999987753 2 24567778888888887 45689999999999999999632 345678999999998854
Q ss_pred hHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHH
Q 011959 197 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (474)
Q Consensus 197 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (474)
..+...|..+..++... .+. ..|+++|++.+++ ++++|++++ ++|.+.+ +++|.++|
T Consensus 94 ~~~~~~g~~~~~v~~~~-~~~------------~~d~~~l~~~l~~---~~~~v~~~~---~~G~~~~----~~~i~~l~ 150 (393)
T 1mdo_A 94 NMIVLLGANPVMVDVDR-DTL------------MVTPEHIEAAITP---QTKAIIPVH---YAGAPAD----LDAIYALG 150 (393)
T ss_dssp HHHHHTTCEEEEECBCT-TTC------------CBCHHHHHHHCCT---TEEEECCBC---GGGCCCC----HHHHHHHH
T ss_pred HHHHHCCCEEEEEeccC-CcC------------CCCHHHHHHhcCC---CceEEEEeC---CCCCcCC----HHHHHHHH
Confidence 34444454332221110 000 1289999998863 578888765 3566666 99999999
Q ss_pred HHhCCEEEEecccc-Cc-ccCCCccccccCCCCceeeh--h--hhcCCCcceEEEEec-HHHHHhhcCCCCc--------
Q 011959 277 KENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTL--G--KIIGGGLPVGAYGGR-RDIMEMVAPAGPM-------- 341 (474)
Q Consensus 277 ~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pdi~t~--s--K~l~~G~~iG~~~~~-~~i~~~~~~~~~~-------- 341 (474)
++||++||+||+|+ |+ ..+. .++. +|++++ + |.+++| ++|+++++ +++++.+......
T Consensus 151 ~~~~~~li~D~a~~~g~~~~~~-----~~~~-~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~ 223 (393)
T 1mdo_A 151 ERYGIPVIEDAAHATGTSYKGR-----HIGA-RGTAIFSFHAIKNITCA-EGGIVVTDNPQFADKLRSLKFHGLGVDAWD 223 (393)
T ss_dssp HHHTCCBCEECTTCTTCEETTE-----ETTS-SSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTEECC---
T ss_pred HHcCCeEEEECccccCCeECCe-----ecCC-CCeEEEeCCCCCccccc-cceEEEeCCHHHHHHHHHHHhcCCcccchh
Confidence 99999999999997 44 3322 2233 787754 4 888765 79999886 7887766421110
Q ss_pred ---------ccccC----CCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCee--EEeeeceeEEE
Q 011959 342 ---------YQAGT----LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI--CGGYISGMFGF 406 (474)
Q Consensus 342 ---------~~~~t----~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~--~v~~~g~~~~i 406 (474)
+...+ +..+++.++++.+.++.+ ++..++.+++.+++++.|.++..+..... ..++.+.++++
T Consensus 224 ~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~v 301 (393)
T 1mdo_A 224 RQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFII 301 (393)
T ss_dssp --------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEE
T ss_pred hhcccccccccccccCccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEEEE
Confidence 00001 345777777777766644 34566666667777777665311110000 12344556777
Q ss_pred EEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCc-------------------------ceEEecC--CcHHH
Q 011959 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-------------------------AGFTSLA--HSSDD 459 (474)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-------------------------~~~~~~~--~t~e~ 459 (474)
.+.... ......++.+.|.++||.+.++..+ .+|+++. +|++|
T Consensus 302 ~~~~~~----------~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~ 371 (393)
T 1mdo_A 302 RVDEAR----------CGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESD 371 (393)
T ss_dssp ECCHHH----------HSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHH
T ss_pred Eecccc----------cccCHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHH
Confidence 764200 0001357888999999998875321 3677654 69999
Q ss_pred HHHHHHHHHHHHhh
Q 011959 460 IQHTITAAEKVLRQ 473 (474)
Q Consensus 460 i~~~l~~l~~~~~~ 473 (474)
+++++++|+++++.
T Consensus 372 i~~~~~~l~~~~~~ 385 (393)
T 1mdo_A 372 FDRVITALHQIAGQ 385 (393)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998754
No 168
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.90 E-value=4.2e-23 Score=205.33 Aligned_cols=313 Identities=12% Similarity=0.078 Sum_probs=201.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHhhCCC-----CCeEEEeCCHHHHHHHHHHHhH-hhcCCcEEEEE
Q 011959 116 ADDQVLAALGETMKKGTSFGAPC--LLENVLAEMVISAVPS-----IEMVRFVNSGTEACMGVLRLAR-AFTGRERIIKF 187 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~~~--~~~~~la~~l~~~~~~-----~~~v~~~~sGseA~~~al~~ar-~~~~~~~ii~~ 187 (474)
.+|++++++.+.+.. ++.+. ....++.+++++++.. .+++++++||++|++.+++... ...++++||+.
T Consensus 16 ~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~ 92 (385)
T 2bkw_A 16 LSGAVQKALDVPSLG---HTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVV 92 (385)
T ss_dssp CCHHHHHTTSCCCCC---TTSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEE
T ss_pred chHHHHHHHhccccc---cCCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEE
Confidence 467777777654322 22221 2345666777776642 4789999999999999999531 11456788788
Q ss_pred eC-CCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCH
Q 011959 188 EG-CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (474)
Q Consensus 188 ~~-~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (474)
+. .||......+...|..+..++.....+ ..|+++|++.+++. ++++|++++++|++|.+.+
T Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-------------~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~-- 155 (385)
T 2bkw_A 93 STGTFSDRFADCLRSYGAQVDVVRPLKIGE-------------SVPLELITEKLSQN--SYGAVTVTHVDTSTAVLSD-- 155 (385)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEECCSSTTS-------------CCCHHHHHHHHHHS--CCSEEEEESEETTTTEECC--
T ss_pred cCCcchHHHHHHHHHcCCceEEEecCCCCC-------------CCCHHHHHHHHhcC--CCCEEEEEccCCCcCeEcC--
Confidence 55 555542233344444332222100011 02899999999752 5788899999999999998
Q ss_pred HHHHHHHHHHHHh--CCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHH-hhcC----
Q 011959 267 DFLNAIRRITKEN--GALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIME-MVAP---- 337 (474)
Q Consensus 267 ~~l~~l~~l~~~~--g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~-~~~~---- 337 (474)
+++|.++|++| |++||+||+|+.... ......+ .+|++ +++|+++++..+|++++++++++ .+.+
T Consensus 156 --l~~i~~~~~~~~~~~~li~D~a~~~~~~--~~~~~~~--~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~ 229 (385)
T 2bkw_A 156 --LKAISQAIKQTSPETFFVVDAVCSIGCE--EFEFDEW--GVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNG 229 (385)
T ss_dssp --HHHHHHHHHHHCTTSEEEEECTTTTTTS--CCCTTTT--TCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHC
T ss_pred --HHHHHHHHHhhCCCCEEEEECccccCCc--ccccccc--CceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCC
Confidence 99999999999 999999999962111 1112222 35665 57898876555799999998877 5420
Q ss_pred -C-C---------C---ccccc----CCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHH-HHHhhhcCCee
Q 011959 338 -A-G---------P---MYQAG----TLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGI-IDAGKKAGHAI 395 (474)
Q Consensus 338 -~-~---------~---~~~~~----t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L-~~~~~~~~~~~ 395 (474)
. . . .+..+ .++.|+.+++++.++|+.+.+ ++..++++++++++.+.| +++ ++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~----g~~~ 305 (385)
T 2bkw_A 230 HVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL----QLTS 305 (385)
T ss_dssp CCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT----CCEE
T ss_pred CCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc----Ccee
Confidence 0 0 0 00101 135677888888888887653 345666777777777777 543 2211
Q ss_pred EEe-----eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----CcceEEe-cC-----CcHHH
Q 011959 396 CGG-----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTS-LA-----HSSDD 459 (474)
Q Consensus 396 ~v~-----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~~~-~~-----~t~e~ 459 (474)
..+ ..+.++++.+. + ..++.+.|.++||.+.++. ...+|++ +. .|+++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~ 369 (385)
T 2bkw_A 306 VSRYPSNMSAHGLTAVYVA-------------D---PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPY 369 (385)
T ss_dssp SSCSSSTTBCSSCEEEECS-------------C---HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTH
T ss_pred cccCcccccCCceEEEecC-------------C---HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHH
Confidence 111 24666676652 1 2578888899999998763 2357877 43 69999
Q ss_pred HHHHHHHHHHHHhhC
Q 011959 460 IQHTITAAEKVLRQI 474 (474)
Q Consensus 460 i~~~l~~l~~~~~~~ 474 (474)
+++++++|+++++++
T Consensus 370 i~~~~~~l~~~~~~~ 384 (385)
T 2bkw_A 370 MKNCFDLIKLALQRK 384 (385)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988653
No 169
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.90 E-value=4.4e-22 Score=198.85 Aligned_cols=257 Identities=14% Similarity=0.107 Sum_probs=181.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
+.++...+|++++++++ +.+.+++++||++|++.+++.+ ...+++||+.++.||+.........
T Consensus 63 ~~~~~~~~l~~~la~~~-g~~~~~~~~sGt~A~~~al~~~--~~~gd~Vi~~~~~y~~~~~~~~~~~------------- 126 (392)
T 3qhx_A 63 TGNPTRTALEAALAAVE-DAAFGRAFSSGMAAADCALRAM--LRPGDHVVIPDDAYGGTFRLIDKVF------------- 126 (392)
T ss_dssp TCCHHHHHHHHHHHHHT-TCSEEEEESSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHTG-------------
T ss_pred CCChHHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEeCCCcchHHHHHHHHH-------------
Confidence 35667788888888888 4568999999999999999953 4566889999999987443321110
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccC
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (474)
...+.++..++.+|+++|++.++ +++++|++|+++|++|.+.+ +++|+++|++||++||+||+|+.+
T Consensus 127 ---~~~g~~~~~v~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~~--- 193 (392)
T 3qhx_A 127 ---TGWNVEYTPVALADLDAVRAAIR---PTTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVLVDNTFASP--- 193 (392)
T ss_dssp ---GGGTCEEEEECTTCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT---
T ss_pred ---HhcCcEEEEeCCCCHHHHHHhhC---CCCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEEEECCCccc---
Confidence 01112466677789999999987 37899999999999999988 999999999999999999999632
Q ss_pred CCccccccCCCCceee--hhhhcCC-C-cceEEEEec-HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHH
Q 011959 296 YGGAQEYFGVTPDLTT--LGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~t--~sK~l~~-G-~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (474)
+.....+..+|+++ ++|.+++ | +++|+++++ +++++.+. ...+..++..+++.+++++..++.+. ...
T Consensus 194 --~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~---~~~~~~g~~~~~~~~~~~~~~l~~l~--~~~ 266 (392)
T 3qhx_A 194 --ALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFA---FLQNGAGAVPGPFDAYLTMRGLKTLV--LRM 266 (392)
T ss_dssp --TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHH---HHHHHHCCCCCHHHHHHHHHHHTTHH--HHH
T ss_pred --ccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHH---HHHHhcCCCCCHHHHHHHHhhhhHHH--HHH
Confidence 11122344567775 9999995 5 789999887 67877775 23334466788998888887775432 334
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCeeEE------------------eeeceeEEEEEecCCCcCcccccccchHHHHHHHH
Q 011959 371 EYLNKITGELTQGIIDAGKKAGHAICG------------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYR 432 (474)
Q Consensus 371 ~~~~~~~~~l~~~L~~~~~~~~~~~~v------------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (474)
++..++.+++.+.|++ ++.+..+ ++.|.++++++..+ ......+.+
T Consensus 267 ~~~~~~~~~l~~~L~~----~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~------------~~~~~~~~~ 330 (392)
T 3qhx_A 267 QRHSENAAAVAEFLAE----HPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAG------------RTAAEQLCA 330 (392)
T ss_dssp HHHHHHHHHHHHHHHT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTC------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----CCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCc------------HHHHHHHHH
Confidence 5556666666666654 3322222 45688999998531 233456666
Q ss_pred HHHHCCeEeccc
Q 011959 433 GMLEEGVYFAPS 444 (474)
Q Consensus 433 ~l~~~Gv~v~~~ 444 (474)
.|...|+.+..+
T Consensus 331 ~l~~~~~~~s~G 342 (392)
T 3qhx_A 331 KTNIFILAESLG 342 (392)
T ss_dssp HCSSSEECSCCC
T ss_pred hCCCceECCCCC
Confidence 666666655443
No 170
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.90 E-value=3.8e-23 Score=203.89 Aligned_cols=317 Identities=16% Similarity=0.113 Sum_probs=193.7
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCC
Q 011959 111 AIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 190 (474)
Q Consensus 111 ~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~ 190 (474)
+++| .+|+|++|+.+.+.. ...++.....+|.+++++++ +.+..++++||++|++.+++.... .+++.+|+.++.
T Consensus 23 ~~~g-~~p~v~~ai~~~~~~--~~~~~~~~~~~l~~~la~~~-~~~~~i~~~~g~~a~~~a~~~~~~-~g~~~vvi~~~~ 97 (359)
T 3pj0_A 23 RNVG-VLTEALQNIDDNLES--DIYGNGAVIEDFETKIAKIL-GKQSAVFFPSGTMAQQIALRIWAD-RKENRRVAYHPL 97 (359)
T ss_dssp CBHH-HHHHHTTTSCTTCBC--CBTTBSHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHHHH-HHTCCEEEECTT
T ss_pred cccC-CCHHHHHHHHhhccc--CcccCCHHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHHHh-cCCCcEEEEecc
Confidence 4444 467888888774322 22235677889999999888 455667779999999999986432 233346666666
Q ss_pred CCCCch--hHH-HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCC-CcccCCH
Q 011959 191 YHGHAD--PFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS-GFIAPKP 266 (474)
Q Consensus 191 yhg~~~--~~~-~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~-G~i~~~~ 266 (474)
+|.... ... ...|..+..++. ..+ .-|+++|++. . +++++|++++++|++ |.+. +.
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~v~~--~~~-------------~~d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~-~~ 157 (359)
T 3pj0_A 98 SHLEIHEQDGLKELQQITPLLLGT--ANQ-------------LLTIDDIKSL-R---EPVSSVLIELPQREIGGQLP-AF 157 (359)
T ss_dssp CHHHHSSTTHHHHHHCCEEEECSC--TTS-------------CCCHHHHHTC-S---SCCSEEEEESSBGGGTSBCC-CH
T ss_pred ceeeehhcchHHHhcCceEEecCC--cCC-------------CcCHHHHHhc-c---CCceEEEEEecccCCCcccC-CH
Confidence 654322 122 233443322111 111 0178888876 2 467888888877765 5555 55
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCCCCccc
Q 011959 267 DFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQ 343 (474)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~~~~ 343 (474)
+++++|.++|++||++||+||+|..+ ..........+....|++ ++||+++++.. |++++++++++.+......+.
T Consensus 158 ~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~~~ 236 (359)
T 3pj0_A 158 EELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRRYG 236 (359)
T ss_dssp HHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHHhC
Confidence 56999999999999999999998532 110000111111233555 89999986533 777899999888762111112
Q ss_pred ccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeE-EeeeceeEEEEEecCCCcCccccccc
Q 011959 344 AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGFFFTEGPVYNFEDAKKS 422 (474)
Q Consensus 344 ~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~~~g~~~~i~~~~~~~~~~~~~~~~ 422 (474)
.++++.++ .++++..+++... +..++..++.+++.+.|+++ .++... .+..+.++++.+...
T Consensus 237 ~~~~~~~~-~~~a~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~---~g~~~~~~~~~~~~~~~~~~~~----------- 299 (359)
T 3pj0_A 237 GDLISLYP-YILSADYYFEKRI--GKMAEYFEAAKGLAERFNSC---SGVKTVPEVPVSNMFHVYFENS----------- 299 (359)
T ss_dssp CCCSCCHH-HHHHHHHHHHHHG--GGHHHHHHHHHHHHHHHHTS---TTEEEESSSCSSSEEEEEESSC-----------
T ss_pred CCcchhHH-HHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHhhC---CCceeeccCCcceEEEEEecCc-----------
Confidence 22333333 3444556665442 44556677777787777653 122221 234566667666321
Q ss_pred chHHHHHHHHHHHHCCeEecccCC------cceEEec-----CCcHHHHHHHHHHHHHH
Q 011959 423 ETTKFARFYRGMLEEGVYFAPSQF------EAGFTSL-----AHSSDDIQHTITAAEKV 470 (474)
Q Consensus 423 ~~~~~~~~~~~l~~~Gv~v~~~~~------~~~~~~~-----~~t~e~i~~~l~~l~~~ 470 (474)
.......+.+.|.++||++.++.. ..++++. ..+.+++++++++|.++
T Consensus 300 ~~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 300 ADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp HHHHHHHHHHHHHHHCEECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhcCcEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 122346788899999999998742 2345533 46899999999999875
No 171
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.90 E-value=3.2e-22 Score=201.32 Aligned_cols=308 Identities=12% Similarity=0.081 Sum_probs=186.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-------C----CHHHHHHHHHHHhhCCC-CCeEEEeCCHHHHHHHHHHHhHhhcCCcE
Q 011959 116 ADDQVLAALGETMKKGTSFGA-------P----CLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRER 183 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~-------~----~~~~~~la~~l~~~~~~-~~~v~~~~sGseA~~~al~~ar~~~~~~~ 183 (474)
.+|+|++++.+++.+....++ . .+++..+.+++++.++. .++ ++++||++|++.+++.. ...++.
T Consensus 37 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~-i~~~sGt~a~~~~~~~~--~~~gd~ 113 (417)
T 3n0l_A 37 TLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFAN-VQPNSGSQANQGVYAAL--INPGDK 113 (417)
T ss_dssp CCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEE-CCCSSHHHHHHHHHHHH--SCTTCE
T ss_pred CCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcc-eEeccHHHHHHHHHHHh--cCCCCE
Confidence 389999999998854211111 1 23444555677777752 233 45577899999999963 455688
Q ss_pred EEEEeCCCCCCchhH--HHhcCCCCccCCCCCCCCCCCCCCCceEEccC-----CCHHHHHHHHhcCCCCeEEEEEcccc
Q 011959 184 IIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEPVV 256 (474)
Q Consensus 184 ii~~~~~yhg~~~~~--~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (474)
|++.+++|++..... ....|.... .+.++. .|+++|++.+++. ++++|++.+.+
T Consensus 114 vl~~~~~~~~~~~~~~~~~~~g~~~~-----------------~~~~~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~ 174 (417)
T 3n0l_A 114 ILGMDLSHGGHLTHGAKVSSSGKMYE-----------------SCFYGVELDGRIDYEKVREIAKKE--KPKLIVCGASA 174 (417)
T ss_dssp EEEECC----------------CCSE-----------------EEEECCCTTSSCCHHHHHHHHHHH--CCSEEEECCSS
T ss_pred EEecccccccccchhhhhhhhcceee-----------------eEeccCCCCCCcCHHHHHHHHHhc--CCeEEEECCcc
Confidence 999999887753311 111222111 111111 3899999999742 45677765543
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCCceee--hhhhcCCCcceEEEEec-HHH
Q 011959 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGR-RDI 331 (474)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~-~~i 331 (474)
.|.+.+ +++|+++|++||++||+||+| .|+ ..+.... .+. ..|+++ +||+| +|+|+|+++++ +++
T Consensus 175 --~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~-~~di~~~s~sK~l-~g~~~G~~~~~~~~~ 244 (417)
T 3n0l_A 175 --YARVID----FAKFREIADEIGAYLFADIAHIAGLVVAGEHPS--PFP-YAHVVSSTTHKTL-RGPRGGIIMTNDEEL 244 (417)
T ss_dssp --CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--CTT-TCSEEEEESSTTT-CSCSCEEEEESCHHH
T ss_pred --cCccCC----HHHHHHHHHHcCCEEEEECccchhhhhcccCCC--ccc-cceEEEeeCcccc-CCCCeeEEEECCHHH
Confidence 377777 999999999999999999997 555 3332111 011 247764 66999 56789999998 788
Q ss_pred HHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE-eeeceeEEEE
Q 011959 332 MEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICG-GYISGMFGFF 407 (474)
Q Consensus 332 ~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-~~~g~~~~i~ 407 (474)
++.+... ...+.+.+.++..+++..+++....+ +++.+++.++.+++.+.|.+. ++.... ...+.++++.
T Consensus 245 ~~~~~~~--~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~~~ 318 (417)
T 3n0l_A 245 AKKINSA--IFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR----KFKLVSDGTDNHLVLMS 318 (417)
T ss_dssp HHHHHHH--HTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEEEE
T ss_pred HHHHhhh--hCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC----CceeccCCCCceEEEEE
Confidence 8877531 11222334456666666667765432 456666777777777777763 221100 1234466666
Q ss_pred EecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC----------cceEEec------CCcHHHHHHHHHHHHHHH
Q 011959 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF----------EAGFTSL------AHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~----------~~~~~~~------~~t~e~i~~~l~~l~~~~ 471 (474)
+.... .....+.+.|.++||++.+... ..+++.. .++++++++++++|++++
T Consensus 319 ~~~~~------------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l 386 (417)
T 3n0l_A 319 FLDRE------------FSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADIL 386 (417)
T ss_dssp CTTSS------------SCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cccCC------------CCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHH
Confidence 53211 0124677788899999875421 2356532 368999999999999988
Q ss_pred hh
Q 011959 472 RQ 473 (474)
Q Consensus 472 ~~ 473 (474)
++
T Consensus 387 ~~ 388 (417)
T 3n0l_A 387 DD 388 (417)
T ss_dssp HT
T ss_pred hc
Confidence 64
No 172
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.90 E-value=3.7e-22 Score=204.44 Aligned_cols=316 Identities=16% Similarity=0.142 Sum_probs=204.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCC------CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhh---c----
Q 011959 113 IGHADDQVLAALGETMKKGTSFGAP------CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF---T---- 179 (474)
Q Consensus 113 lG~~~p~v~~a~~~~~~~~~~~~~~------~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~---~---- 179 (474)
.+|.+|++++++.++....+.+... .++..+++++++++++-...+++++||++|+..++++++.+ .
T Consensus 75 ~~~~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~ 154 (474)
T 1wyu_B 75 TMKYNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGR 154 (474)
T ss_dssp CCCCCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred cccCCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 3467788988888763222222111 15678899999988852234568899999999999887654 1
Q ss_pred CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCC
Q 011959 180 GRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259 (474)
Q Consensus 180 ~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~ 259 (474)
++++||+.+ .+|+.+...+...|..+..++... .+. -|+++|++.++. ++++|+++++ |++
T Consensus 155 ~r~~Vlv~~-~~h~~~~~~~~~~G~~vv~v~~~~-~~~-------------~d~~~L~~~i~~---~t~~v~~~~p-n~~ 215 (474)
T 1wyu_B 155 TRRVVLVPD-SAHGSNPATASMAGYQVREIPSGP-EGE-------------VDLEALKRELGP---HVAALMLTNP-NTL 215 (474)
T ss_dssp TCCEEEEET-TSCTHHHHHHHHTTCEEEEECBCT-TSS-------------BCHHHHHHHCST---TEEEEEECSS-CTT
T ss_pred CCCEEEEeC-CcChhhHHHHHHCCCEEEEecCCC-CCC-------------cCHHHHHHhhCC---CceEEEEECC-CCC
Confidence 233677655 677777766666555333221110 010 189999999863 6888888875 467
Q ss_pred Ccc-cCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceee--hhhhcCC-----CcceEEEEecHHH
Q 011959 260 GFI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTT--LGKIIGG-----GLPVGAYGGRRDI 331 (474)
Q Consensus 260 G~i-~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t--~sK~l~~-----G~~iG~~~~~~~i 331 (474)
|.+ .+ +++|.++|++||++||+||+|..+..+. .....++ +|+++ ++|+|++ |+++|++++++++
T Consensus 216 G~~~~~----l~~i~~l~~~~g~~li~Dea~~~~~~g~-~~~~~~g--~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l 288 (474)
T 1wyu_B 216 GLFERR----ILEISRLCKEAGVQLYYDGANLNAIMGW-ARPGDMG--FDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHL 288 (474)
T ss_dssp SCCCTT----HHHHHHHHHHHTCEEEEEGGGGGGTTTT-CCHHHHT--CSEEECCTTTTTCCCCTTSCCCCCCEEECGGG
T ss_pred cccCCC----HHHHHHHHHHcCCEEEEeCchhhhhccC-CCcccCC--CcEEEEeCccccccCCCCCCCCeEEEEEcHHH
Confidence 877 34 9999999999999999999995432221 1122233 67775 5899862 3699999999998
Q ss_pred HHhhcCC-----CC-c----------ccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011959 332 MEMVAPA-----GP-M----------YQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAG 392 (474)
Q Consensus 332 ~~~~~~~-----~~-~----------~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (474)
++.+... +. + ....++++|+++++++.+.++.+.. .+..+++.++++++.+.|++. .+.
T Consensus 289 ~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~--g~~ 366 (474)
T 1wyu_B 289 APYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK--GYR 366 (474)
T ss_dssp GGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCB
T ss_pred HHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CcE
Confidence 8776410 00 0 0112345788888888888875433 334677788888888888774 222
Q ss_pred CeeEEeeecee--EEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC-----CcceEEecCC--cHHHHHHH
Q 011959 393 HAICGGYISGM--FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLAH--SSDDIQHT 463 (474)
Q Consensus 393 ~~~~v~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~~~~~~--t~e~i~~~ 463 (474)
+.. +.+.+ +++.+. . ......+.+.|.++||++.... ...+|+++.. |+++++++
T Consensus 367 ~~~---~~~~~~~~~~~~~-~------------~~~~~~l~~~L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~ 430 (474)
T 1wyu_B 367 VPY---DGPSMHEFVAQPP-E------------GFRALDLAKGLLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAF 430 (474)
T ss_dssp CSS---CSSCCSCEEEBCS-T------------TCCHHHHHHHHHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHH
T ss_pred ecC---CCCcceEEEEEcC-C------------CCCHHHHHHHHHHCCccccccccccccCCEEEEEeecCCCHHHHHHH
Confidence 211 11122 333331 0 0113578889999999863221 2457886554 99999999
Q ss_pred HHHHHHHHh
Q 011959 464 ITAAEKVLR 472 (474)
Q Consensus 464 l~~l~~~~~ 472 (474)
+++|+++++
T Consensus 431 ~~~L~~~~~ 439 (474)
T 1wyu_B 431 AEAMGALLK 439 (474)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 999998875
No 173
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.90 E-value=2.8e-23 Score=215.68 Aligned_cols=344 Identities=11% Similarity=0.063 Sum_probs=200.2
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCCCC---CCCHHHHHHHHHHH-hhC-----C-CCCeEEEeCCHHHHHHHHHHHh--Hhh
Q 011959 111 AIIGHADDQVLAALGETMKKGTSFG---APCLLENVLAEMVI-SAV-----P-SIEMVRFVNSGTEACMGVLRLA--RAF 178 (474)
Q Consensus 111 ~~lG~~~p~v~~a~~~~~~~~~~~~---~~~~~~~~la~~l~-~~~-----~-~~~~v~~~~sGseA~~~al~~a--r~~ 178 (474)
+..++.+|.+++++.+.+.. ..|+ +..+++.++++.+. +.. + +.++|++++|+++|+..+++.. +.+
T Consensus 112 g~~~~~~~~~~~al~~~~~~-~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~~~l 190 (546)
T 2zy4_A 112 DQLGLDPAAFLHEMVDGILG-CNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGL 190 (546)
T ss_dssp HTSCCCHHHHHHHHHHHHHT-CSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCChHHHHHHHHhhhc-CCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhc
Confidence 44567888899988887753 3343 23467777776553 332 1 2479999999999999999852 334
Q ss_pred c-CCcEEEEEeCCCCCCchhHHHhcCCC--CccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccc
Q 011959 179 T-GRERIIKFEGCYHGHADPFLVKAGSG--VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPV 255 (474)
Q Consensus 179 ~-~~~~ii~~~~~yhg~~~~~~~~~g~~--~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~ 255 (474)
. +++.|++.+++|+++...+. ..+.+ +..++.....++ .-|+++|++.+. .++++|+++.+
T Consensus 191 ~~~Gd~Vlv~~P~y~~~~~~~~-~~~~g~~~~~v~~~~~~~~------------~~d~~~l~~~~~---~~~k~v~l~~p 254 (546)
T 2zy4_A 191 LKAGDKVAIGMPVFTPYIEIPE-LAQYALEEVAINADPSLNW------------QYPDSELDKLKD---PAIKIFFCVNP 254 (546)
T ss_dssp SCTTCEEEEEESCCHHHHHHHH-STTSCCEEEEEECBGGGTT------------BCCHHHHGGGGS---TTEEEEEEESS
T ss_pred CCCCCEEEEeCCCCccHHHHHH-HcCCCcEEEEEecCcccCC------------CCCHHHHHHhhC---CCCeEEEEECC
Confidence 4 46789999999998655432 22211 111111000000 017888887663 36787777777
Q ss_pred cCCCCcccCCHHHHHHHHHHH--HHhCCEEEEeccccCcccCCCcccccc-CCCCceeehhhhcC-CCcceEEEEecHH-
Q 011959 256 VGNSGFIAPKPDFLNAIRRIT--KENGALLIFDEVMTGFRLAYGGAQEYF-GVTPDLTTLGKIIG-GGLPVGAYGGRRD- 330 (474)
Q Consensus 256 ~~~~G~i~~~~~~l~~l~~l~--~~~g~llI~DEv~~g~r~g~~~~~~~~-g~~pdi~t~sK~l~-~G~~iG~~~~~~~- 330 (474)
+|++|.+.+.++ +++|.++| ++||++||+||+|.+|..+.....+.. +....+.+|||.+| +|+|+||++++++
T Consensus 255 ~NPtG~~~~~~~-l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~ 333 (546)
T 2zy4_A 255 SNPPSVKMDQRS-LERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWRLGVVAAHQQN 333 (546)
T ss_dssp CSSSCBCCCHHH-HHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGCEEEEEEESSC
T ss_pred CCCCCccCCHHH-HHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcceEEEEECCHH
Confidence 888998887655 99999999 789999999999998822211111111 11122448999998 7999999998875
Q ss_pred HHHhhcCC---------------------------------CCcccccCCCCChHHHHHHH-H-HHHHhcC-CCHHHHHH
Q 011959 331 IMEMVAPA---------------------------------GPMYQAGTLSGNPLAMTAGI-H-TLKRLKE-PGTYEYLN 374 (474)
Q Consensus 331 i~~~~~~~---------------------------------~~~~~~~t~~~~~~~~aaa~-a-al~~~~~-~~~~~~~~ 374 (474)
+++.+... +......+.+.+.+.+.++. . ....+++ +.+.++++
T Consensus 334 l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~~~r 413 (546)
T 2zy4_A 334 VFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLK 413 (546)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 76665210 00011223455666666532 1 1222333 33333333
Q ss_pred HHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecC----CCcCcccccccchHHHHHHHHHHHHCCeEecccC-----
Q 011959 375 KITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEG----PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----- 445 (474)
Q Consensus 375 ~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----- 445 (474)
+..+.-++.+.+.+. .++....+..|.++++.+..- +...+.............+.+.+.++||.+.|+.
T Consensus 414 ~~~~~r~~~l~~~L~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~~ 492 (546)
T 2zy4_A 414 QLIRRRETTLYRELG-MPPLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSN 492 (546)
T ss_dssp HHHHHHHHHHHGGGT-SSCCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTCS
T ss_pred HHHHHHHHHHHHhcC-CCcccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCCC
Confidence 333322232322221 222212234455667765310 0000000000000012346677788999999863
Q ss_pred CcceEEecCC-cHHHHHHHHHHHHHHHhh
Q 011959 446 FEAGFTSLAH-SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 446 ~~~~~~~~~~-t~e~i~~~l~~l~~~~~~ 473 (474)
.+++|+++.. +++++++++++|++++++
T Consensus 493 ~~~iRis~~~~~~e~i~~~~~~l~~~l~~ 521 (546)
T 2zy4_A 493 RPSGRASLANLNEYEYAAIGRALRKMADE 521 (546)
T ss_dssp SCEEEEESSSSCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHHHHH
Confidence 2357888776 899999999999988764
No 174
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.90 E-value=5.6e-22 Score=197.94 Aligned_cols=306 Identities=15% Similarity=0.094 Sum_probs=201.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCC
Q 011959 112 IIGHADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 190 (474)
Q Consensus 112 ~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~ 190 (474)
.+.+.+++..+++.+....+..|+ ++++...+|+++++++++ .+++++++||++|++.+++.. ..++++|++.++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g-~~~~i~~~sG~~ai~~~~~~~--~~~gd~vl~~~~~ 107 (389)
T 3acz_A 31 TFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEG-AAGSAAFGSGMGAISSSTLAF--LQKGDHLIAGDTL 107 (389)
T ss_dssp BBCCSSHHHHHHHHTTCSSCCCBTTTCCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHTTT--CCTTCEEEEESSC
T ss_pred ceecCChHHHHHhhcCCCCCcccCCCCChHHHHHHHHHHHHhC-CCeEEEeCCHHHHHHHHHHHH--hCCCCEEEEeCCC
Confidence 345555544433322211122222 457778899999999884 458888999999999999842 3456789999999
Q ss_pred CCCCchhH---HHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHH
Q 011959 191 YHGHADPF---LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 267 (474)
Q Consensus 191 yhg~~~~~---~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~ 267 (474)
||+..... +...|. ++..++.+|++++++.+++ ++++|++|+++|++|.+.+
T Consensus 108 y~~~~~~~~~~~~~~g~-------------------~~~~v~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~--- 162 (389)
T 3acz_A 108 YGCTVSLFTHWLPRFGI-------------------EVDLIDTSDVEKVKAAWKP---NTKMVYLESPANPTCKVSD--- 162 (389)
T ss_dssp CHHHHHHHHHHHHHTTC-------------------EEEEECTTCHHHHHHTCCT---TEEEEEEESSCTTTCCCCC---
T ss_pred chHHHHHHHHHHHHcCC-------------------EEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCCeecC---
Confidence 98854433 222222 3556666799999998863 6899999999999999998
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCC-Ccce-EEEEecH-HHHHhhcCCCCcc
Q 011959 268 FLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGRR-DIMEMVAPAGPMY 342 (474)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~-G~~i-G~~~~~~-~i~~~~~~~~~~~ 342 (474)
+++|.++|++||+++|+||+|+++..+. .++..+|++ +++|.+++ |.|+ |++++++ ++++.+.. ..
T Consensus 163 -l~~i~~~~~~~~~~livD~~~~~~~~~~-----~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~---~~ 233 (389)
T 3acz_A 163 -IKGIAVVCHERGARLVVDATFTSPCFLK-----PLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKF---YR 233 (389)
T ss_dssp -HHHHHHHHHHHTCEEEEECTTTCTTTCC-----GGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHH---HH
T ss_pred -HHHHHHHHHHcCCEEEEECCCccccccC-----ccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHH---HH
Confidence 9999999999999999999997552111 123457776 79999995 6898 9999998 88887762 22
Q ss_pred cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHh----------hhcCCe----eEEeeeceeEEEEE
Q 011959 343 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG----------KKAGHA----ICGGYISGMFGFFF 408 (474)
Q Consensus 343 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~----------~~~~~~----~~v~~~g~~~~i~~ 408 (474)
.....+.+++.+.++++.|+.+ +...++..++.+.+.+.|++.. ..++.. ...++.|.++.+++
T Consensus 234 ~~~g~~~~~~~~~~~~~~l~~l--~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l 311 (389)
T 3acz_A 234 KDAGSLMAPMDAFLCARGMKTL--PIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEM 311 (389)
T ss_dssp HHHCCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEE
T ss_pred HhcCCCCCHHHHHHHHcCccHH--HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEE
Confidence 2123346788888777777533 2234555566666666666531 000000 00134577888877
Q ss_pred ecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc--C----------------------------CcceEEecCCcHH
Q 011959 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS--Q----------------------------FEAGFTSLAHSSD 458 (474)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~--~----------------------------~~~~~~~~~~t~e 458 (474)
.. ...+.+.+.+.|+++.+. | ...+|++... +
T Consensus 312 ~~----------------~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--~ 373 (389)
T 3acz_A 312 KS----------------FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGI--E 373 (389)
T ss_dssp SS----------------HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCS--S
T ss_pred CC----------------HHHHHHHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEecc--C
Confidence 32 134455555678766542 1 1245665544 3
Q ss_pred HHHHHHHHHHHHHhhC
Q 011959 459 DIQHTITAAEKVLRQI 474 (474)
Q Consensus 459 ~i~~~l~~l~~~~~~~ 474 (474)
+++++++.|+++++++
T Consensus 374 ~~~~li~~l~~al~~~ 389 (389)
T 3acz_A 374 NVDDIIADLKQALELW 389 (389)
T ss_dssp CHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhhC
Confidence 7888888888887653
No 175
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.90 E-value=1.4e-22 Score=203.61 Aligned_cols=288 Identities=13% Similarity=0.045 Sum_probs=192.7
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
+.++...+|++++++++ +.+.+++++||++|++.+++.. ...++.||+.+++||+..........
T Consensus 78 ~~~p~~~~l~~~la~~~-g~~~~~~~~sG~~Ai~~al~~l--~~~Gd~Vi~~~~~y~~~~~~~~~~~~------------ 142 (414)
T 3ndn_A 78 YGNPTVSVFEERLRLIE-GAPAAFATASGMAAVFTSLGAL--LGAGDRLVAARSLFGSCFVVCSEILP------------ 142 (414)
T ss_dssp TCCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHTT--CCTTCEEEEESCCCHHHHHHHHTHHH------------
T ss_pred CCChHHHHHHHHHHHHH-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCccchHHHHHHHHHH------------
Confidence 46788899999999988 4678999999999999999842 34567899999999884432211000
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccC
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (474)
..+.++..++.+|+++|++.++. ++++|++|+++|++|.+.+ +++|+++|++||++||+||+|+..
T Consensus 143 ----~~g~~~~~v~~~d~~~l~~ai~~---~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~livDe~~~~~--- 208 (414)
T 3ndn_A 143 ----RWGVQTVFVDGDDLSQWERALSV---PTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVVLDNVFATP--- 208 (414)
T ss_dssp ----HTTCEEEEECTTCHHHHHHHTSS---CCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTHH---
T ss_pred ----HcCcEEEEeCCCCHHHHHHhcCC---CCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEEEECCCccc---
Confidence 01124667788899999999873 5789999999999999988 999999999999999999999521
Q ss_pred CCccccccCCCCceeehhhhcCC-C-cceEEEEecHHHHH-hhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHH
Q 011959 296 YGGAQEYFGVTPDLTTLGKIIGG-G-LPVGAYGGRRDIME-MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEY 372 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~t~sK~l~~-G-~~iG~~~~~~~i~~-~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~ 372 (474)
..+....+|....+.+++|.+++ | +++|+++++++.+. .+.. .........++..+++++..++.+ +...++
T Consensus 209 ~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~---~~~~~g~~~~~~~a~~~~~~l~~l--~~r~~~ 283 (414)
T 3ndn_A 209 LLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQK---LMRHTGPAMSAFNAWVLLKGLETL--AIRVQH 283 (414)
T ss_dssp HHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHH---HHHHHCCCCCHHHHHHHHHHGGGH--HHHHHH
T ss_pred ccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHH---HHHHcCCCCCHHHHHHHHHHHHHH--HHHHHH
Confidence 11111244555555679999996 7 89999999988765 4431 111112234677766666555433 234455
Q ss_pred HHHHHHHHHHHHHHHhhhcCCeeE------------------EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHH
Q 011959 373 LNKITGELTQGIIDAGKKAGHAIC------------------GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 434 (474)
Q Consensus 373 ~~~~~~~l~~~L~~~~~~~~~~~~------------------v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 434 (474)
..++.+++.+.|++. +.+.. .++.|.++++++..... ...+...+|.+.|
T Consensus 284 ~~~~a~~l~~~L~~~----p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~--------~~~~~~~~~~~~l 351 (414)
T 3ndn_A 284 SNASAQRIAEFLNGH----PSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPED--------VAKQRAFEVLDKM 351 (414)
T ss_dssp HHHHHHHHHHHHHTC----TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGG--------GHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC----CCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCcc--------ccHHHHHHHHHhC
Confidence 666667777666543 32222 24578999999853100 0023345677777
Q ss_pred HHCCeEecccCC---------------------------cceEEecCCcHHHHHHHHHHHHHHH
Q 011959 435 LEEGVYFAPSQF---------------------------EAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 435 ~~~Gv~v~~~~~---------------------------~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
...++.+..++. +.+|++. ..|+++.+++.|++++
T Consensus 352 ~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsv--G~e~~~dli~dl~~al 413 (414)
T 3ndn_A 352 RLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISV--GLEDTDDLIADIDRAL 413 (414)
T ss_dssp SSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEEC--CSSCHHHHHHHHHHHH
T ss_pred ccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEe--CcCCHHHHHHHHHHhh
Confidence 666655544432 1234444 3467788888888776
No 176
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.90 E-value=2.5e-22 Score=201.37 Aligned_cols=281 Identities=13% Similarity=0.022 Sum_probs=190.5
Q ss_pred CHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchh---HHHhcCCCCccCCCCCC
Q 011959 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP---FLVKAGSGVATLGLPDS 214 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~---~~~~~g~~~~~~~~~~~ 214 (474)
.+...+|.+.+++++ +.+++++++||++|+..+++.. ...++.|++.++.|++.... .+...|.
T Consensus 61 ~~~~~~l~~~ia~~~-g~~~~i~~~~g~~ai~~~~~~l--~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~---------- 127 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLE-KTEACVATSSGMGAIAATVLTI--LKAGDHLISDECLYGCTHALFEHALTKFGI---------- 127 (404)
T ss_dssp CHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHH--CCTTCEEEEESCCCHHHHHHHHTHHHHTTC----------
T ss_pred ChHHHHHHHHHHHHh-CCCcEEEeCChHHHHHHHHHHH--hCCCCEEEEeCCCchhHHHHHHHHHHHcCC----------
Confidence 455668888888877 4468999999999999999842 34567888888888874432 2222222
Q ss_pred CCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHH-hCCEEEEeccccCc-
Q 011959 215 PGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFDEVMTGF- 292 (474)
Q Consensus 215 ~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~-~g~llI~DEv~~g~- 292 (474)
++..++.+|+++|++.++. ++++|++++++|++|.+.+ +++|.++|++ ||++||+||+|.++
T Consensus 128 ---------~~~~v~~~d~~~l~~~i~~---~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~ 191 (404)
T 1e5e_A 128 ---------QVDFINTAIPGEVKKHMKP---NTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPM 191 (404)
T ss_dssp ---------EEEEECTTSTTHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTT
T ss_pred ---------EEEEECCCCHHHHHHhcCC---CCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhh
Confidence 3566677789999998863 6899999999999999997 9999999999 99999999999866
Q ss_pred ccCCCccccccCCCCceeehhhhcC-CCcce-EEEEecHHHHH-hhcCCCCccccc-CCCCChHHHHHHHHHHHHhcCCC
Q 011959 293 RLAYGGAQEYFGVTPDLTTLGKIIG-GGLPV-GAYGGRRDIME-MVAPAGPMYQAG-TLSGNPLAMTAGIHTLKRLKEPG 368 (474)
Q Consensus 293 r~g~~~~~~~~g~~pdi~t~sK~l~-~G~~i-G~~~~~~~i~~-~~~~~~~~~~~~-t~~~~~~~~aaa~aal~~~~~~~ 368 (474)
.. ... .++...-+.++||.++ +|+|+ |++++++++++ .+.+. .... +.+.+++.+.++.++|+.+ +.
T Consensus 192 ~~-~~~---~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~---~~~~~g~~~~~~~~~~~~~~l~~~--~~ 262 (404)
T 1e5e_A 192 IT-NPV---DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVG---IKDITGSVISPHDAWLITRGLSTL--NI 262 (404)
T ss_dssp TC-CGG---GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTC---CCCCCCCCCCHHHHHHHHHHHTTH--HH
T ss_pred hC-Ccc---ccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHH---HHhCCCCCCCHHHHHHHHHhHhHH--HH
Confidence 32 111 2343333347999999 58998 99999999888 77642 2222 3467888988888888633 22
Q ss_pred HHHHHHHHHHHHHHHHHHHh----hhcCCe----------eEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHH
Q 011959 369 TYEYLNKITGELTQGIIDAG----KKAGHA----------ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGM 434 (474)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~----~~~~~~----------~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 434 (474)
..++..++.+.+.+.|++.. ..++.. ...++.|.|+.|++.+. ...+.+.+
T Consensus 263 ~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~---------------~~~~~~~l 327 (404)
T 1e5e_A 263 RMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG---------------FEGAKKLL 327 (404)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH---------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCC---------------HHHHHHHH
Confidence 34445556666655555431 000100 00134588888876320 12344555
Q ss_pred HHCCeEeccc--C----------------------------CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 435 LEEGVYFAPS--Q----------------------------FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 435 ~~~Gv~v~~~--~----------------------------~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+.||++... + ...+|+++.. |+++++++.|+++++.
T Consensus 328 ~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~--e~~~~li~~l~~al~~ 394 (404)
T 1e5e_A 328 DNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI--EDADELIADFKQGLDA 394 (404)
T ss_dssp HTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS--SCHHHHHHHHHHHHHH
T ss_pred HhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC--CCHHHHHHHHHHHHHH
Confidence 6778754331 1 2457888776 8899999999988764
No 177
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.90 E-value=1.4e-22 Score=202.97 Aligned_cols=322 Identities=11% Similarity=0.065 Sum_probs=189.9
Q ss_pred CHHHHHHHHHHHHhcCCCC-----CCCHHHHHHHHHHHhhCCCCC--eEEEeCCHHHHHHHHHHHh-Hhhc-CCcEEEEE
Q 011959 117 DDQVLAALGETMKKGTSFG-----APCLLENVLAEMVISAVPSIE--MVRFVNSGTEACMGVLRLA-RAFT-GRERIIKF 187 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~~~-----~~~~~~~~la~~l~~~~~~~~--~v~~~~sGseA~~~al~~a-r~~~-~~~~ii~~ 187 (474)
-|.|++|.+..++...... +..++++.+++.+.......+ ...-+.+|+.|+..++.+. +.+. +++.|++.
T Consensus 64 l~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip 143 (420)
T 4h51_A 64 LRVVRKAEQLLLDMNLDYEYLPISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLS 143 (420)
T ss_dssp CHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEE
T ss_pred CHHHHHHHHHHhcCCCCCCCCCcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 3788888877776643322 234555666655532221122 3455889999998888754 3443 46789999
Q ss_pred eCCCCCCchhHHHhcCCC-CccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCH
Q 011959 188 EGCYHGHADPFLVKAGSG-VATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (474)
Q Consensus 188 ~~~yhg~~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (474)
+|+|..+. ..+...|.. +....+.... ... .|.+.+.+.++..+++..+++..+.+|++|.....+
T Consensus 144 ~P~w~~y~-~i~~~aG~~~V~~~~~~~~~---------~~~---~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~ 210 (420)
T 4h51_A 144 DPTWPNHY-GVVKAAGWKNICTYAYYDPK---------TVS---LNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQE 210 (420)
T ss_dssp ESCCTHHH-HHHHHTTCCCEEEEECEEGG---------GTE---ECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHH
T ss_pred cCCchhHH-HHHHHcCCeEEEeecccccc---------ccC---CCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHH
Confidence 99996643 334444432 2111000000 000 167888887776556777888888888899877655
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCc-ccCC---Ccccc-ccCCCCce---eehhhhcC-CCcceEEEEecHHHHHhhcC
Q 011959 267 DFLNAIRRITKENGALLIFDEVMTGF-RLAY---GGAQE-YFGVTPDL---TTLGKIIG-GGLPVGAYGGRRDIMEMVAP 337 (474)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~---~~~~~-~~g~~pdi---~t~sK~l~-~G~~iG~~~~~~~i~~~~~~ 337 (474)
+ +++|.++|+++++++|+||+|.|| ..+. .+... ..+..+.+ -+|||.++ .|||+||+++..+..+....
T Consensus 211 ~-~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~ 289 (420)
T 4h51_A 211 Q-WNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRAD 289 (420)
T ss_dssp H-HHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHH
T ss_pred H-HHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecccCHHHHHH
Confidence 5 999999999999999999999998 4321 11111 11122233 37999999 79999999775443322210
Q ss_pred C----CCcccccCCCCChHHHHHHHHHHHHh------c-C-CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEE
Q 011959 338 A----GPMYQAGTLSGNPLAMTAGIHTLKRL------K-E-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 405 (474)
Q Consensus 338 ~----~~~~~~~t~~~~~~~~aaa~aal~~~------~-~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~ 405 (474)
. .........+.+..++.++...|..- + + +.++++++++++.+.+.|+++.....+....+..|+|.+
T Consensus 290 ~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~ 369 (420)
T 4h51_A 290 VKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSF 369 (420)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEE
T ss_pred HHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEe
Confidence 0 01111222233445555555544310 1 1 344555666666666666654321111111234555543
Q ss_pred EEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEEecC-CcHHHHHHHHHHHHHHHhhC
Q 011959 406 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLA-HSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 406 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~-~t~e~i~~~l~~l~~~~~~~ 474 (474)
+-+. .+.++.|.++||++.+++ |++++ .+++.|+.++++|.++++++
T Consensus 370 ~gls------------------~e~v~~L~e~~Vy~~~~g----Ris~Agl~~~ni~~~a~aI~~vvr~i 417 (420)
T 4h51_A 370 LGLS------------------KAQCEYCQNHNIFITVSG----RANMAGLTHETALMLAQTINDAVRNV 417 (420)
T ss_dssp CCCC------------------HHHHHHHHHTTEECCTTC----EEEGGGCCHHHHHHHHHHHHHHHC--
T ss_pred cCcC------------------HHHHHHHHhCCEEEcCCC----EEEeccCCHHHHHHHHHHHHHHHHHh
Confidence 2221 233567789999998875 88765 69999999999999998764
No 178
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.89 E-value=1.8e-21 Score=194.08 Aligned_cols=311 Identities=14% Similarity=0.081 Sum_probs=197.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCch
Q 011959 117 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~ 196 (474)
.|++++++.++++++....++.....++.+.++++++ .+..++++||++|++.+++..+ ..++++|++.+++||+...
T Consensus 16 ~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~la~~~~-~~~~i~~~sGt~al~~~l~~l~-~~~gd~Vi~~~~~~~~~~~ 93 (388)
T 1b9h_A 16 DDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHG-AAHALAVTNGTHALELALQVMG-VGPGTEVIVPAFTFISSSQ 93 (388)
T ss_dssp CHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTT-CSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCTHHHH
T ss_pred CHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHhC-CCeEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCccHHHHH
Confidence 4899999999998753222345667888999998884 4466677778999999999532 3456789999999988654
Q ss_pred hHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHH
Q 011959 197 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (474)
Q Consensus 197 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (474)
. +...|..+..++.....+. -|+++|++.++. ++++|+ | ++++|.+.+ +++|.++|
T Consensus 94 ~-~~~~g~~~~~v~~~~~~~~-------------~d~~~l~~~i~~---~~~~v~--~-~n~tG~~~~----l~~i~~la 149 (388)
T 1b9h_A 94 A-AQRLGAVTVPVDVDAATYN-------------LDPEAVAAAVTP---RTKVIM--P-VHMAGLMAD----MDALAKIS 149 (388)
T ss_dssp H-HHHTTCEEEEECBCTTTCC-------------BCHHHHHHHCCT---TEEEEC--C-BCGGGCCCC----HHHHHHHH
T ss_pred H-HHHcCCEEEEEecCCCcCC-------------CCHHHHHHhcCc---CceEEE--E-eCCccCcCC----HHHHHHHH
Confidence 3 3334443322111100000 189999998863 567666 4 455788877 99999999
Q ss_pred HHhCCEEEEecccc-Cc-ccCCCccccccCCCCceeehh--hhcCCCcceEEEEecHH-H--HHhhcCCCC--------c
Q 011959 277 KENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG--KIIGGGLPVGAYGGRRD-I--MEMVAPAGP--------M 341 (474)
Q Consensus 277 ~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pdi~t~s--K~l~~G~~iG~~~~~~~-i--~~~~~~~~~--------~ 341 (474)
++||++||+||+|+ |+ ..+.. ...++ ..++.+|| |.+++ .++|+++++++ + ++.+..... .
T Consensus 150 ~~~~~~li~D~a~~~g~~~~~~~--~~~~~-~i~~~S~s~~K~l~g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (388)
T 1b9h_A 150 ADTGVPLLQDAAHAHGARWQGKR--VGELD-SIATFSFQNGKLMTA-GEGGAVVFPDGETEKYETAFLRHSCGRPRDDRR 225 (388)
T ss_dssp HHHTCCBCEECTTCTTCEETTEE--GGGSS-SCEEEECCTTSSSCS-SSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSS
T ss_pred HHcCCEEEEecchhcCCccCCee--ccccc-ceEEEEccCCCcccC-CCeEEEEECCHHHHHHHHHHHHHhCCCCccCcc
Confidence 99999999999996 44 33221 12223 23455677 66654 58999998875 6 555421000 0
Q ss_pred c----cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE------eeeceeEEEEEecC
Q 011959 342 Y----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG------GYISGMFGFFFTEG 411 (474)
Q Consensus 342 ~----~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v------~~~g~~~~i~~~~~ 411 (474)
+ .+.++..+++.++++.+.++.+ ++..++.+++.+++.+.|+++ . ++.... +..+.++++.+...
T Consensus 226 ~~~~~~g~~~~~~~~~~a~~~~~~~~l--~~~~~~~~~~~~~l~~~L~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (388)
T 1b9h_A 226 YFHKIAGSNMRLNEFSASVLRAQLARL--DEQIAVRDERWTLLSRLLGAI-D--GVVPQGGDVRADRNSHYMAMFRIPGL 300 (388)
T ss_dssp CCCCSCCCBCBCBHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTS-T--TCEECCCCTTCCBCCCSEEEEECTTC
T ss_pred ceeecccccCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccC-C--CccccCCCcCCCccceEEEEEEeCCc
Confidence 0 0122335666666655555443 335666777777777777653 1 221111 22356777766321
Q ss_pred CCcCcccccccchHHHHHHHHHHHHCCeEecccCCc---------------------------------ceEEe--cCC-
Q 011959 412 PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE---------------------------------AGFTS--LAH- 455 (474)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---------------------------------~~~~~--~~~- 455 (474)
......++.+.|.++||.+.++..+ .++++ ..+
T Consensus 301 -----------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~ 369 (388)
T 1b9h_A 301 -----------TEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLA 369 (388)
T ss_dssp -----------CHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGS
T ss_pred -----------CcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCC
Confidence 0123467889999999998754221 14554 356
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 011959 456 SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 456 t~e~i~~~l~~l~~~~~~ 473 (474)
|++||+++++.|++++++
T Consensus 370 t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 370 GEPELHATAEIIADAVAR 387 (388)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 899999999999998875
No 179
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.89 E-value=1.4e-22 Score=203.99 Aligned_cols=308 Identities=12% Similarity=0.052 Sum_probs=181.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCC----------CCHHHHH-HHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEE
Q 011959 116 ADDQVLAALGETMKKGTSFGA----------PCLLENV-LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERI 184 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~----------~~~~~~~-la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~i 184 (474)
.||+|++|+.+++.+....++ ..+...+ ..+++++.++.....++++||++|++.+++.. ..+++.|
T Consensus 42 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~--~~~gd~v 119 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTAL--LQPGDTV 119 (420)
T ss_dssp CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH--CCTTCEE
T ss_pred CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHh--cCCCCEE
Confidence 699999999998854221111 1123333 33677777752223344678999999999842 3455677
Q ss_pred EEEeCCCCCCchhHH--HhcCCCCccCCCCCCCCCCCCCCCceEEcc-----CCCHHHHHHHHhcCCCCeEEEEEccccC
Q 011959 185 IKFEGCYHGHADPFL--VKAGSGVATLGLPDSPGVPKGATYETLTAP-----FNDVSALENLFENNKGEIAAIILEPVVG 257 (474)
Q Consensus 185 i~~~~~yhg~~~~~~--~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~d~~~le~~l~~~~~~~a~vi~ep~~~ 257 (474)
++.++.|++...... ...|..+. .+.++ ..|+++|++.++++ ++++|++++.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~g~~~~-----------------~~~~~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~~ 180 (420)
T 3gbx_A 120 LGMNLAQGGHLTHGSPVNFSGKLYN-----------------IVPYGIDESGKIDYDEMAKLAKEH--KPKMIIGGFSAY 180 (420)
T ss_dssp EEEEEC------------CHHHHSE-----------------EEEEEECTTCSCCHHHHHHHHHHH--CCSEEEECCTTC
T ss_pred Eecchhhcceeccchhhhhccccee-----------------EEeccCCccCCcCHHHHHHHHHhc--CCeEEEEecCcc
Confidence 777666655221111 11111110 11111 13899999999853 467778754322
Q ss_pred CCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCCceee--hhhhcCCCcceEEEEecH---H
Q 011959 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRR---D 330 (474)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~~---~ 330 (474)
|...+ +++|+++|++||++||+||+| .|+ +.+..... .. .+|+++ +||+++ |.+.|++++++ +
T Consensus 181 --~~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~--~~-~~di~~~s~sK~~~-g~~gg~~~~~~~~~~ 250 (420)
T 3gbx_A 181 --SGVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNP--VP-HAHVVTTTTHKTLA-GPRGGLILAKGGDEE 250 (420)
T ss_dssp --CSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCS--TT-TSSEEEEESSGGGC-SCSCEEEEESSCCHH
T ss_pred --CCccC----HHHHHHHHHHcCCEEEEECCcchhceecccCCcc--cc-cCCEEEeecccCCC-CCCceEEEEcCCcHH
Confidence 33555 999999999999999999998 565 54432211 11 278775 789997 55679999887 7
Q ss_pred HHHhhcCCCCcccccCCCCC-hHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe-eeceeEE
Q 011959 331 IMEMVAPAGPMYQAGTLSGN-PLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFG 405 (474)
Q Consensus 331 i~~~~~~~~~~~~~~t~~~~-~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~ 405 (474)
+++.+.. ....++++.+ ...++++..++....+ +++.+++.++.+++++.|.+. ++..... ..+.+++
T Consensus 251 ~~~~~~~---~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~ 323 (420)
T 3gbx_A 251 LYKKLNS---AVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR----GYKVVSGGTENHLFL 323 (420)
T ss_dssp HHHHHHH---HHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT----TCEEGGGSCSSSEEE
T ss_pred HHHHhhh---hcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc----CCeeccCCCCCeEEE
Confidence 7777652 2222223333 3333343445544322 455777788888888888763 2211111 3466777
Q ss_pred EEEecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc----------CCcceEEec------CCcHHHHHHHHHHHHH
Q 011959 406 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----------QFEAGFTSL------AHSSDDIQHTITAAEK 469 (474)
Q Consensus 406 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----------~~~~~~~~~------~~t~e~i~~~l~~l~~ 469 (474)
+.+.... .....+.+.|.++||++.+. +...+|++. ..+++++++++++|++
T Consensus 324 ~~~~~~~------------~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~ 391 (420)
T 3gbx_A 324 LDLVDKN------------LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCD 391 (420)
T ss_dssp EECGGGT------------CCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHH
T ss_pred EEcCCCC------------CCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHHHHHHHH
Confidence 7664211 01246677888899999872 122367743 2568999999999999
Q ss_pred HHhh
Q 011959 470 VLRQ 473 (474)
Q Consensus 470 ~~~~ 473 (474)
++++
T Consensus 392 ~l~~ 395 (420)
T 3gbx_A 392 VLDN 395 (420)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 8764
No 180
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.89 E-value=9.4e-23 Score=202.22 Aligned_cols=300 Identities=12% Similarity=0.085 Sum_probs=191.4
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHH
Q 011959 120 VLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 199 (474)
Q Consensus 120 v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~ 199 (474)
+.+++.+.+..+. .++.....++.+.+++++ +.+++++++||++|++.+++.++ ..++++|++.+++|++.... +
T Consensus 21 ~~~~~~~~~~~~~--~~~~~~~~~l~~~la~~~-~~~~~~~~~~gt~a~~~~~~~~~-~~~gd~v~~~~~~~~~~~~~-~ 95 (374)
T 3uwc_A 21 YLNDLREFIKTAD--FTLGAELEKFEKRFAALH-NAPHAIGVGTGTDALAMSFKMLN-IGAGDEVITCANTFIASVGA-I 95 (374)
T ss_dssp HHHHHHHHHHHTC--CSSCHHHHHHHHHHHHHT-TCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCHHHHHH-H
T ss_pred HHHHHHHHHHcCC--cccChhHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHcC-CCCCCEEEECCCccHHHHHH-H
Confidence 7778777776642 246777889999999998 45589999999999999999532 44567899999988885443 3
Q ss_pred HhcCCCCccCCCCCCCCCCCCCCCceEEccCC-----CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHH
Q 011959 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 274 (474)
Q Consensus 200 ~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~ 274 (474)
...|..+ ..++.+ |+++|++.+++ ++++|+ +++++|.+.+ +++|.+
T Consensus 96 ~~~g~~~-------------------~~~~~~~~~~~d~~~l~~~~~~---~~~~v~---~~n~~G~~~~----~~~i~~ 146 (374)
T 3uwc_A 96 VQAGATP-------------------VLVDSENGYVIDPEKIEAAITD---KTKAIM---PVHYTGNIAD----MPALAK 146 (374)
T ss_dssp HHTTCEE-------------------EEECBCTTSSBCGGGTGGGCCT---TEEEEC---CBCGGGCCCC----HHHHHH
T ss_pred HHcCCEE-------------------EEEecCCCCCcCHHHHHHhCCC---CceEEE---EeCCcCCcCC----HHHHHH
Confidence 3334322 222222 78888887763 567766 4456788877 999999
Q ss_pred HHHHhCCEEEEeccccCcccCCCccccccCCCCceeehh----hhcCC-CcceEEEEec-HHHHHhhcCCCC------c-
Q 011959 275 ITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG----KIIGG-GLPVGAYGGR-RDIMEMVAPAGP------M- 341 (474)
Q Consensus 275 l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~s----K~l~~-G~~iG~~~~~-~~i~~~~~~~~~------~- 341 (474)
+|++||++||+||+|+.+ ..+.....+..+|++++| |.+++ |. .|+++++ +++++.+..... .
T Consensus 147 ~~~~~~~~li~D~~~~~g---~~~~~~~~~~~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (374)
T 3uwc_A 147 IAKKHNLHIVEDACQTIL---GRINDKFVGSWGQFACFSLHPLKNLNVWSD-AGVIITHSDEYAEKLRLYRNHGLINRDV 222 (374)
T ss_dssp HHHHTTCEEEEECTTCTT---CEETTEETTSSSSEEEEECSSSSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTE
T ss_pred HHHHcCCEEEEeCCCccC---ceeCCeeccccccEEEEeCCCCCcCCccce-eEEEEeCCHHHHHHHHHHHhcCccccCc
Confidence 999999999999999733 112223445556888666 99987 66 8888765 466555542111 0
Q ss_pred --ccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe-eeceeEEEEEecCCCcCccc
Q 011959 342 --YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFED 418 (474)
Q Consensus 342 --~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~~~~~~ 418 (474)
..+.++..+++.++++...++.+ +++.++.+++.+++++.|.++.....++.... ....++.+.+...
T Consensus 223 ~~~~~~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 293 (374)
T 3uwc_A 223 CVEYGINCRMDTIQAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVK------- 293 (374)
T ss_dssp ESSCCCBCBCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEET-------
T ss_pred cccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcC-------
Confidence 01123344666666555544333 34666666777777776665421011110000 1111111111110
Q ss_pred ccccchHHHHHHHHHHHHCCeEecccCC---------------------------cceEEe--cCCcHHHHHHHHHHHHH
Q 011959 419 AKKSETTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFTS--LAHSSDDIQHTITAAEK 469 (474)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------------~~~~~~--~~~t~e~i~~~l~~l~~ 469 (474)
....+.+.|.++||.+.++.. ..++++ ..+|++||++++++|++
T Consensus 294 -------~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~ 366 (374)
T 3uwc_A 294 -------YRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVRE 366 (374)
T ss_dssp -------THHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence 135788899999999887641 234553 45799999999999999
Q ss_pred HHhh
Q 011959 470 VLRQ 473 (474)
Q Consensus 470 ~~~~ 473 (474)
++++
T Consensus 367 ~l~~ 370 (374)
T 3uwc_A 367 FYLE 370 (374)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9865
No 181
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.89 E-value=1e-21 Score=199.65 Aligned_cols=316 Identities=16% Similarity=0.135 Sum_probs=189.0
Q ss_pred CCHHHHHHHHHHHHhcCCCC--------CCCH--HHHHHH-HHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhcCCcE
Q 011959 116 ADDQVLAALGETMKKGTSFG--------APCL--LENVLA-EMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRER 183 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~--------~~~~--~~~~la-~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~~~~~ 183 (474)
.+|+|++|+.+++.+....+ .... ..++++ +++++.+ +.+.+.+ ++||++|++.+++.+ ...+++
T Consensus 57 ~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~~~-g~~~~~v~~~sGs~a~~~a~~~~--~~~Gd~ 133 (447)
T 3h7f_A 57 VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKALF-GAEFANVQPHSGAQANAAVLHAL--MSPGER 133 (447)
T ss_dssp CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH-TCSEEECCCSSHHHHHHHHHHHH--CCTTCE
T ss_pred CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHHHc-CCCceEEEeCCHHHHHHHHHHHh--cCCCCE
Confidence 48999999999886421111 1111 225566 8888887 4556666 999999999999953 345678
Q ss_pred EEEEeCCCCCCchhH--HHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEE-ccccCCCC
Q 011959 184 IIKFEGCYHGHADPF--LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL-EPVVGNSG 260 (474)
Q Consensus 184 ii~~~~~yhg~~~~~--~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~-ep~~~~~G 260 (474)
|++.+++|+++.... +...|.......++.... . -..|+++|++.+++. ++++|++ .|++++++
T Consensus 134 Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~---~~~d~~~l~~~i~~~--~~~~i~~~~~~~~~~~ 200 (447)
T 3h7f_A 134 LLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPA--------T---HLIDMDAVRATALEF--RPKVIIAGWSAYPRVL 200 (447)
T ss_dssp EEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTT--------T---CSCCHHHHHHHHHHH--CCSEEEEECSSCCSCC
T ss_pred EEecCcccccccchhhhhhhcCCeeEEEEcCcCcc--------c---CCcCHHHHHHHHHhc--CCeEEEEcCCCCCCcc
Confidence 888888887732211 111111111100110000 0 013899999998643 3456666 45554332
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhc
Q 011959 261 FIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVA 336 (474)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~ 336 (474)
+ +++|+++|++||++||+||+| .|+ +.+..... +. ..|++ ++||+++ |+|.|++++++++++.+.
T Consensus 201 ---~----l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~--~~-~~di~~~s~sK~l~-G~~gG~i~~~~~~~~~l~ 269 (447)
T 3h7f_A 201 ---D----FAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSP--VP-HADVVSTTVHKTLG-GGRSGLIVGKQQYAKAIN 269 (447)
T ss_dssp ---C----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCS--TT-TCSEEEEESSGGGC-CCSCEEEEECGGGHHHHH
T ss_pred ---C----HHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCC--CC-CCcEEEecCCcCCC-CCCeEEEEECHHHHHHHh
Confidence 3 999999999999999999997 666 54432111 11 23555 7899995 789999999999888775
Q ss_pred CCCCcccccCCCC-ChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhc-CCeeEE-eeeceeEEEEEec
Q 011959 337 PAGPMYQAGTLSG-NPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKA-GHAICG-GYISGMFGFFFTE 410 (474)
Q Consensus 337 ~~~~~~~~~t~~~-~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~v-~~~g~~~~i~~~~ 410 (474)
. ....+++++ +...++++.+++..+.+ +++.+++.++.+++.+.|.+..... ++.... ...+.++++.+..
T Consensus 270 ~---~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 346 (447)
T 3h7f_A 270 S---AVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRD 346 (447)
T ss_dssp H---HHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTT
T ss_pred h---hcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCC
Confidence 3 112223333 33335555566665443 3467777888888888876641111 221100 1234555665532
Q ss_pred CCCcCcccccccchHHHHHHHHHHHHCCeEec----cc------CCcceEEec------CCcHHHHHHHHHHHHHHHhh
Q 011959 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFA----PS------QFEAGFTSL------AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~------~~~~~~~~~------~~t~e~i~~~l~~l~~~~~~ 473 (474)
... ....+.+.|.++||++. +. ....+|+.. .++++++++++++|++++++
T Consensus 347 ~~~------------~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~ 413 (447)
T 3h7f_A 347 SPL------------DGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATALAT 413 (447)
T ss_dssp SSC------------CHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHS
T ss_pred CCC------------CHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhc
Confidence 110 11345566667799988 33 112356632 27899999999999998853
No 182
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.89 E-value=1.6e-21 Score=195.17 Aligned_cols=286 Identities=15% Similarity=0.072 Sum_probs=191.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
++.+...+++++++++++ .+.+++++||++|+..+++.. ..++++|++.++.||+.......... .
T Consensus 62 ~~~~~~~~l~~~la~~~g-~~~~i~~~sG~~a~~~~l~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~----------~- 127 (398)
T 1gc0_A 62 ISNPTLNLLEARMASLEG-GEAGLALASGMGAITSTLWTL--LRPGDEVLLGNTLYGCTFAFLHHGIG----------E- 127 (398)
T ss_dssp -CCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHHH--CCTTCEEEEESSCCSHHHHHHHHTGG----------G-
T ss_pred CCChHHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHHH--hcCCCEEEEeCCCchhHHHHHHHHHH----------H-
Confidence 356778888888888884 458888999999999999953 34567899999999885543321100 0
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccC
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (474)
.+.++..++.+|++++++.+++ ++++|++++++|++|.+.+ +++|+++|++||++||+||+|+.+..+
T Consensus 128 -----~g~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~ 195 (398)
T 1gc0_A 128 -----FGVKLRHVDMADLQALEAAMTP---ATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTPYLQ 195 (398)
T ss_dssp -----GTCEEEEECTTCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHHHHC
T ss_pred -----cCCEEEEECCCCHHHHHHhcCC---CCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence 0113555666799999998863 6899999999999999998 999999999999999999999744211
Q ss_pred CCccccccCCCCceeehhhhcCC-Ccce-EEEEecHHHHH-hhcCCCCcccc-cCCCCChHHHHHHHHHHHHhcCCCHHH
Q 011959 296 YGGAQEYFGVTPDLTTLGKIIGG-GLPV-GAYGGRRDIME-MVAPAGPMYQA-GTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~t~sK~l~~-G~~i-G~~~~~~~i~~-~~~~~~~~~~~-~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (474)
.. ..++....+.+++|.+++ |+|+ |++++++++++ .+. ..... .+.+.+++.++++.++++.+ +...+
T Consensus 196 ~~---~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 267 (398)
T 1gc0_A 196 RP---LELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRL---QGLKDMTGAVLSPHDAALLMRGIKTL--NLRMD 267 (398)
T ss_dssp CG---GGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHH---THHHHHTCCCCCHHHHHHHHHHHTTH--HHHHH
T ss_pred Cc---hhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHH---HHhhccCCCCCCHHHHHHHHhccchH--HHHHH
Confidence 11 123444445589999994 7887 88899988765 454 22222 34567899888888887643 34556
Q ss_pred HHHHHHHHHHHHHHHHhh----hcC---------Cee-EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHC
Q 011959 372 YLNKITGELTQGIIDAGK----KAG---------HAI-CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 437 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~----~~~---------~~~-~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 437 (474)
+..++.+.+.+.|++... .++ +.. ..++.|.++.+++... .....+.+.+.
T Consensus 268 ~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~---------------~~~~~~~l~~~ 332 (398)
T 1gc0_A 268 RHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGG---------------IGAGRRFMNAL 332 (398)
T ss_dssp HHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTH---------------HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCC---------------HHHHHHHHHhC
Confidence 666777777777765210 000 000 0124677878776321 12344556667
Q ss_pred CeEecc---cC---------------------------CcceEEe--cCCcHHHHHHHHHHHHHH
Q 011959 438 GVYFAP---SQ---------------------------FEAGFTS--LAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 438 Gv~v~~---~~---------------------------~~~~~~~--~~~t~e~i~~~l~~l~~~ 470 (474)
|+.... ++ ...+|++ ...++++|+.+.++|+++
T Consensus 333 ~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 333 QLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp SSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred CCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 766533 10 1345665 556788888888888764
No 183
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.89 E-value=4.5e-21 Score=193.62 Aligned_cols=317 Identities=12% Similarity=0.035 Sum_probs=197.4
Q ss_pred eccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCc
Q 011959 103 DYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRE 182 (474)
Q Consensus 103 D~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~ 182 (474)
||..+. ..++ .++++.+++.+.++.+. |+.......+|.+.+++++ +.+++++++||++|++.+++.. ..++
T Consensus 20 ~l~~~~--p~~~-~p~~~~~a~~~~~~~~~-y~~~~~~~~~l~~~la~~~-~~~~v~~~~ggt~al~~~l~~l---~~gd 91 (424)
T 2po3_A 20 PLLVGR--PNRI-DRARLYERLDRALDSQW-LSNGGPLVREFEERVAGLA-GVRHAVATCNATAGLQLLAHAA---GLTG 91 (424)
T ss_dssp CEETTC--CCCC-CHHHHHHHHHHHHHHTC-CSSSCHHHHHHHHHHHHHH-TSSEEEEESCHHHHHHHHHHHH---TCCS
T ss_pred cccccC--CCCC-ChHHHHHHHHHHHhcCC-cccCCHHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHc---CCCC
Confidence 344443 3444 36899999999887642 3221466778888888887 5679999999999999999954 2458
Q ss_pred EEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcc
Q 011959 183 RIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFI 262 (474)
Q Consensus 183 ~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i 262 (474)
+|++.+++|++... .+...|..+..++.....+. -|+++|++.++. ++++|++.+ ++|..
T Consensus 92 ~Vlv~~~~~~~~~~-~~~~~G~~~~~v~~~~~~~~-------------~d~~~l~~~i~~---~~~~v~~~~---~tG~~ 151 (424)
T 2po3_A 92 EVIMPSMTFAATPH-ALRWIGLTPVFADIDPDTGN-------------LDPDQVAAAVTP---RTSAVVGVH---LWGRP 151 (424)
T ss_dssp EEEEESSSCTHHHH-HHHHTTCEEEEECBCTTTSS-------------BCHHHHGGGCCT---TEEEEEEEC---GGGCC
T ss_pred EEEECCCccHHHHH-HHHHcCCEEEEEecCCCcCC-------------cCHHHHHHhhCc---CCcEEEEEC---CCCCc
Confidence 89999999988654 34444443322111100000 178998887763 577777643 46666
Q ss_pred cCCHHHHHHHHHHHHHhCCEEEEecccc-Cc-ccCCCccccccCCCCcee--ehh--hhcCCCcceEEEEec-HHHHHhh
Q 011959 263 APKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT--TLG--KIIGGGLPVGAYGGR-RDIMEMV 335 (474)
Q Consensus 263 ~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pdi~--t~s--K~l~~G~~iG~~~~~-~~i~~~~ 335 (474)
.+ +++|.++|++||++||+||+|+ |+ ..+.. ++..+|++ +|| |.+++ +++|+++++ +++++.+
T Consensus 152 ~~----l~~i~~la~~~~~~li~Dea~~~g~~~~~~~-----~~~~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l~~~l 221 (424)
T 2po3_A 152 CA----ADQLRKVADEHGLRLYFDAAHALGCAVDGRP-----AGSLGDAEVFSFHATKAVNA-FEGGAVVTDDADLAARI 221 (424)
T ss_dssp CC----HHHHHHHHHHTTCEEEEECTTCTTCEETTEE-----TTSSSSEEEEECCTTSSSCC-SSCEEEEESCHHHHHHH
T ss_pred CC----HHHHHHHHHHcCCEEEEECccccCCeECCee-----cccccCEEEEeCCCCCCccC-CCCeEEEeCCHHHHHHH
Confidence 55 9999999999999999999997 77 54321 22225665 565 77765 799999998 7887766
Q ss_pred cCCCCc-----c----cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe-eec----
Q 011959 336 APAGPM-----Y----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YIS---- 401 (474)
Q Consensus 336 ~~~~~~-----~----~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g---- 401 (474)
...... + .+.++..+++.+++++..++.++ .+.++.+++.+++++.|. +.+...... ..|
T Consensus 222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~--~~~~~~~~~~~~l~~~L~----~~~g~~~~~~~~~~~~~ 295 (424)
T 2po3_A 222 RALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFP--EVIDRNRRNHAAYREHLA----DLPGVLVADHDRHGLNN 295 (424)
T ss_dssp HHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTC----SCTTEEECCGGGGSCCC
T ss_pred HHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhc----cCCCccccCCCCCCccc
Confidence 421000 0 11122345667666665554332 344555555555555443 332111111 111
Q ss_pred -eeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-c-----------------c-------eEEe--c
Q 011959 402 -GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-E-----------------A-------GFTS--L 453 (474)
Q Consensus 402 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~-----------------~-------~~~~--~ 453 (474)
.++.+.+.... ......++.+.|.++||.+.+... + . ++++ .
T Consensus 296 ~~~~~i~~~~~~----------~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~ 365 (424)
T 2po3_A 296 HQYVIVEIDEAT----------TGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGT 365 (424)
T ss_dssp CCCEEEEECHHH----------HSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCST
T ss_pred cEEEEEEECCcc----------chhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCC
Confidence 33444442100 000125678888999999876321 1 0 5565 6
Q ss_pred CCcHHHHHHHHHHHHHHHhh
Q 011959 454 AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 454 ~~t~e~i~~~l~~l~~~~~~ 473 (474)
.+|++|+++++++|++++++
T Consensus 366 ~~t~e~i~~~~~~L~~~~~~ 385 (424)
T 2po3_A 366 AIGDDDIRRVADLLRLCATR 385 (424)
T ss_dssp TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhh
Confidence 77999999999999988753
No 184
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.89 E-value=2.4e-21 Score=194.91 Aligned_cols=301 Identities=13% Similarity=0.053 Sum_probs=194.5
Q ss_pred ccCCCCCHHHHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeC
Q 011959 111 AIIGHADDQVLAALGETMKKGTSFG-APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEG 189 (474)
Q Consensus 111 ~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~ 189 (474)
..+++.+|+.++++.+ ...+..|+ ...+...++++++++++ +.+++++++||++|++.+++.+ ..++++|++.++
T Consensus 28 ~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~-g~~~~~~~~~gt~a~~~al~~l--~~~gd~vi~~~~ 103 (412)
T 2cb1_A 28 AAYGFKTLEEGQERFA-TGEGYVYARQKDPTAKALEERLKALE-GALEAVVLASGQAATFAALLAL--LRPGDEVVAAKG 103 (412)
T ss_dssp SBCCCSSHHHHHHHHH-HCCSCSBTTTCCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHTT--CCTTCEEEEETT
T ss_pred ceeecCChHHHHHHhc-cccCcCcCCCCChHHHHHHHHHHHHh-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEeCC
Confidence 4567777766555544 12222233 24577889999999888 4568999999999999999953 345678999888
Q ss_pred CCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHH
Q 011959 190 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 269 (474)
Q Consensus 190 ~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l 269 (474)
.|++.......... ..+.++..++. |+++|++.++. ++++|++++++|++|.+.+ +
T Consensus 104 ~~~~~~~~~~~~~~----------------~~g~~~~~~~~-~~~~l~~~i~~---~~~~v~~~~~~n~~G~~~~----l 159 (412)
T 2cb1_A 104 LFGQTIGLFGQVLS----------------LMGVTVRYVDP-EPEAVREALSA---KTRAVFVETVANPALLVPD----L 159 (412)
T ss_dssp CCHHHHHHHHHTTT----------------TTTCEEEEECS-SHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----H
T ss_pred CchhHHHHHHHHHH----------------HcCCEEEEECC-CHHHHHHHhcc---CCeEEEEeCCCCCCccccc----H
Confidence 88764333221000 01123455555 48999988863 6899999999999999998 9
Q ss_pred HHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcC-CCcceEEEEecH----------------
Q 011959 270 NAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIG-GGLPVGAYGGRR---------------- 329 (474)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~-~G~~iG~~~~~~---------------- 329 (474)
++|+++|++||+++|+||+|+++ ... ...+..+|++ +++|.++ +|.|+|+++..+
T Consensus 160 ~~i~~l~~~~~~~li~D~~~~~~~~~~-----~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 234 (412)
T 2cb1_A 160 EALATLAEEAGVALVVDNTFGAAGALC-----RPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDL 234 (412)
T ss_dssp HHHHHHHHHHTCEEEEECGGGTTTTSC-----CGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC--
T ss_pred HHHHHHHHHcCCEEEEECCCccccccC-----CccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccc
Confidence 99999999999999999999754 211 1122346776 5999998 478999986543
Q ss_pred ------------HHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE
Q 011959 330 ------------DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 397 (474)
Q Consensus 330 ------------~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v 397 (474)
++.+.++.. .........+|..++.+...++.+ +...++..++.+++.+.|.+. +.+..+
T Consensus 235 ~g~~~~~~~~~~~~~~~~r~~--~~~~~g~~~~~~~a~~~~~~l~~l--~~~~~~~~~~~~~l~~~L~~~----~~v~~v 306 (412)
T 2cb1_A 235 KGQIPWEALRARCFPERVRTL--GLSLCGMALSPFNAYLLFQGLETV--ALRVARMSETARFLAERLQGH----PKVKAL 306 (412)
T ss_dssp -----HHHHGGGHHHHHHHHH--HTTTTCCCCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHHHTC----TTCSEE
T ss_pred cccchhhccchHHHHHHHHHH--HHHhcCCCCChHHhHHHHcCCchH--HHHHHHHHHHHHHHHHHHHcC----CCeeEE
Confidence 333333310 001112245777777776666544 234455566777777777643 212112
Q ss_pred ------------------eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--------------
Q 011959 398 ------------------GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ-------------- 445 (474)
Q Consensus 398 ------------------~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-------------- 445 (474)
++.|.++.+.+ .+ .+.+.+.|.+.||++ .+.
T Consensus 307 ~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~~---------------~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~ 369 (412)
T 2cb1_A 307 RYPGLPEDPAHRNARKYLASGGPILTLDL-GD---------------LERASRFLGAIRLLK-AANLGDARTLLVHPWTT 369 (412)
T ss_dssp ECTTSTTCTTHHHHHHHCSSSCSEEEEEC-SS---------------HHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTT
T ss_pred ECCCCCCCccHHHHHHhCCCCceEEEEEe-CC---------------HHHHHHHHHhCCeee-ecccCCCcceeecCccc
Confidence 24677888877 32 134556666789887 431
Q ss_pred ----------------CcceEEe--cCCcHHHHHHHHHHHHH
Q 011959 446 ----------------FEAGFTS--LAHSSDDIQHTITAAEK 469 (474)
Q Consensus 446 ----------------~~~~~~~--~~~t~e~i~~~l~~l~~ 469 (474)
...+|++ ...++++|+.++++|++
T Consensus 370 ~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 370 THSRLKEEARLQAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp TTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred ccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 1234554 55678888888877754
No 185
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.7e-22 Score=206.79 Aligned_cols=319 Identities=13% Similarity=0.087 Sum_probs=204.4
Q ss_pred CCHHHHHHHHHHHHhcCC---CCC-----CCHHHHHHHHHHHhhCC-C--CCeEEEeCCHHHHHHHHHHHhHhhc----C
Q 011959 116 ADDQVLAALGETMKKGTS---FGA-----PCLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAFT----G 180 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~---~~~-----~~~~~~~la~~l~~~~~-~--~~~v~~~~sGseA~~~al~~ar~~~----~ 180 (474)
+++.+.+++.+++..... +.+ ..+++.+++++++++++ . .+.+++++||++|+..+++.++... +
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g 155 (497)
T 3mc6_A 76 GGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRG 155 (497)
T ss_dssp CCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSC
T ss_pred CchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 568999999998877321 111 13567788999999886 2 4689999999999999999876532 2
Q ss_pred --CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCC
Q 011959 181 --RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (474)
Q Consensus 181 --~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (474)
++.|++..++ |......+...|..+..++.....+. -|+++|++.+++ ++++|+++.++++
T Consensus 156 ~~~~~Vi~~~~~-h~~~~~~~~~~G~~~~~v~~~~~~~~-------------~d~~~l~~~i~~---~~~~v~~~~p~np 218 (497)
T 3mc6_A 156 ITEPEIIAPVTA-HAGFDKAAYYFGMKLRHVELDPTTYQ-------------VDLGKVKKFINK---NTVLLVGSAPNFP 218 (497)
T ss_dssp CSSCEEEEETTS-CHHHHHHHHHSCCEEEEECBCTTTCS-------------BCTTTTGGGCCS---SEEEEEEETTCTT
T ss_pred CCCceEEEeCCc-cHHHHHHHHHcCCeEEEEecCcccCc-------------CCHHHHHHHHhh---CCEEEEEECCCCC
Confidence 3556665544 55455555555654333222110010 167888888863 5889999999999
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-cc-----CC----CccccccCCCCcee--ehhhhcCCCcceEEEE
Q 011959 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL-----AY----GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYG 326 (474)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~-----g~----~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~ 326 (474)
+|.+.+ +++|+++|++||++||+||+|+|+ +. +. .+.....|+ |++ +++|.+.+|.++|+++
T Consensus 219 tG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~--d~~~~s~~K~l~~~~~~g~~~ 292 (497)
T 3mc6_A 219 HGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGV--TSISCDTHKYGFAPKGSSVIM 292 (497)
T ss_dssp TCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTC--CEEEEETTTTTCCCSSCEEEE
T ss_pred CCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCC--cEEEECchhhcCCCCCceeEE
Confidence 999988 888999999999999999999876 43 11 122233444 554 5779888888999999
Q ss_pred ecHHHHHhhcCC-CCcccccC-----CCC--ChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCee
Q 011959 327 GRRDIMEMVAPA-GPMYQAGT-----LSG--NPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (474)
Q Consensus 327 ~~~~i~~~~~~~-~~~~~~~t-----~~~--~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (474)
++++.+...... ...+..++ +.+ +....++..++++.+.+ .++.++..++.+++++.|++... ++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~--g~~~ 370 (497)
T 3mc6_A 293 YRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIP--DLDI 370 (497)
T ss_dssp CSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT--TCEE
T ss_pred ecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CEEE
Confidence 887766544211 01111111 111 11223344455554433 45566777778888888776311 2221
Q ss_pred EEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCc-ceEEe-cCCcHHHHHHHHHHHHHHHhh
Q 011959 396 CGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-AGFTS-LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 396 ~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-~~~~~-~~~t~e~i~~~l~~l~~~~~~ 473 (474)
.....+.++.+.... ....++.+.|.++||.+.....+ .++++ ..+|++++++++++|++++++
T Consensus 371 ~~~~~~~~v~~~~~~--------------~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~ 436 (497)
T 3mc6_A 371 MGNPRYSVISFSSKT--------------LNIHELSDRLSKKGWHFNALQKPVALHMAFTRLSAHVVDEICDILRTTVQE 436 (497)
T ss_dssp CSCCCSSEEEEECTT--------------TTHHHHHHHHHTTTCBCEECCSSCCEEEECCTTTTCTHHHHHHHHHHHHHH
T ss_pred ecCCCeeEEEEeCCC--------------CCHHHHHHHHHhCCEEEecCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 112345555544211 11357889999999988776433 34553 256999999999999998864
No 186
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.89 E-value=1.6e-22 Score=205.85 Aligned_cols=311 Identities=10% Similarity=0.076 Sum_probs=200.5
Q ss_pred ccCCCCCHHHHHHHHHH----HHhc-CCCC-CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEE
Q 011959 111 AIIGHADDQVLAALGET----MKKG-TSFG-APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERI 184 (474)
Q Consensus 111 ~~lG~~~p~v~~a~~~~----~~~~-~~~~-~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~i 184 (474)
.+.+-.+|.|.++.... .+.+ ..|+ +..+...++++++++++ +.+++++++||++|+..+++ ...++++|
T Consensus 99 ~~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~~~g~~~~~~l~~~la~~~-g~~~~i~~~sGt~al~~~l~---~~~~Gd~V 174 (464)
T 1ibj_A 99 DPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLD-KADRAFCFTSGMAALSAVTH---LIKNGEEI 174 (464)
T ss_dssp CTTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHT---TSCTTCEE
T ss_pred CCCCCCCccHHhhhhhhhhcccccCCccccCCCCHHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHH---HhCCCCEE
Confidence 34444566677665532 1121 1222 24567889999999988 45688999999999988876 44567889
Q ss_pred EEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccC
Q 011959 185 IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAP 264 (474)
Q Consensus 185 i~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~ 264 (474)
|+.++.||+........ ....+.++..++.+|+++|++.++ +++++|++++++|++|.+.+
T Consensus 175 i~~~~~y~~~~~~~~~~----------------~~~~G~~v~~v~~~d~~~l~~~i~---~~tk~v~l~~p~NptG~v~~ 235 (464)
T 1ibj_A 175 VAGDDVYGGSDRLLSQV----------------VPRSGVVVKRVNTTKLDEVAAAIG---PQTKLVWLESPTNPRQQISD 235 (464)
T ss_dssp EEESSCCHHHHHHHHHT----------------SGGGTCEEEEECTTSHHHHHHHCC---SSEEEEEECSSCTTTCCCCC
T ss_pred EEECCCchhHHHHHHHH----------------HHHcCCEEEEeCCCCHHHHHHHhc---cCceEEEEeCCCCCCCEeec
Confidence 99999998743221000 011122466677779999999886 36899999999999999997
Q ss_pred CHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcCC--CcceEEEEec-HHHHHhhcCCC
Q 011959 265 KPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIGG--GLPVGAYGGR-RDIMEMVAPAG 339 (474)
Q Consensus 265 ~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~~--G~~iG~~~~~-~~i~~~~~~~~ 339 (474)
+++|.++|++||++||+||+|... ..+....+ ..|++ +++|.+++ |+++|+++++ +++++.+..
T Consensus 236 ----l~~i~~la~~~gi~livDea~~~g---~~~~~~~~--~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~-- 304 (464)
T 1ibj_A 236 ----IRKISEMAHAQGALVLVDNSIMSP---VLSRPLEL--GADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYF-- 304 (464)
T ss_dssp ----HHHHHHHHHTTTCEEEEECTTTCT---TTCCGGGT--TCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHH--
T ss_pred ----HHHHHHHHHHcCCEEEEECCCccc---ccCChhhc--CCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHH--
Confidence 999999999999999999999621 11111113 35665 79999985 8999999998 478777752
Q ss_pred CcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH----------hhhcCCe----eEEeeeceeEE
Q 011959 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDA----------GKKAGHA----ICGGYISGMFG 405 (474)
Q Consensus 340 ~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~----------~~~~~~~----~~v~~~g~~~~ 405 (474)
.......+.+++.+.++.++|+.+. ..+++..++...+.+.|++. +.+++.. ...++.|.+++
T Consensus 305 -~~~~~g~~~~~~~~~a~~~al~~~~--~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~ 381 (464)
T 1ibj_A 305 -LQNSEGSGLAPFDCWLCLRGIKTMA--LRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFS 381 (464)
T ss_dssp -HHHHTTCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEE
T ss_pred -HHHhcCCCCCHHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEE
Confidence 2211234567888888887775321 11222223333333333321 1111100 01234577888
Q ss_pred EEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC---------------------------CcceEEecCCcHH
Q 011959 406 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------------------------FEAGFTSLAHSSD 458 (474)
Q Consensus 406 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------------------~~~~~~~~~~t~e 458 (474)
+.+.+ ......+.+.|...||.+..+. ...+|+++.. |
T Consensus 382 ~~l~~-------------~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~--e 446 (464)
T 1ibj_A 382 FITGS-------------VALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI--E 446 (464)
T ss_dssp EECSC-------------HHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS--S
T ss_pred EEECC-------------HHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC--C
Confidence 87621 1122456677666777665442 2356887766 8
Q ss_pred HHHHHHHHHHHHHhh
Q 011959 459 DIQHTITAAEKVLRQ 473 (474)
Q Consensus 459 ~i~~~l~~l~~~~~~ 473 (474)
+++++++.|++++++
T Consensus 447 di~~li~~L~~al~~ 461 (464)
T 1ibj_A 447 DVDDLISDLDIAFKT 461 (464)
T ss_dssp CHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999875
No 187
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.89 E-value=3.7e-22 Score=197.99 Aligned_cols=305 Identities=17% Similarity=0.079 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchh
Q 011959 118 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 197 (474)
Q Consensus 118 p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~ 197 (474)
|++++++.+.+..+. + ++.+...++.+.+++++ +.+++++++||++|++.+++.+. ...+++|++..++|++...
T Consensus 17 ~~~~~a~~~~~~~~~-~-~~~~~~~~l~~~la~~~-~~~~~i~~~sgt~al~~~l~~l~-~~~gd~Vi~~~~~~~~~~~- 91 (373)
T 3frk_A 17 YEIKFKFEEIYKRNW-F-ILGDEDKKFEQEFADYC-NVNYCIGCGNGLDALHLILKGYD-IGFGDEVIVPSNTFIATAL- 91 (373)
T ss_dssp HHHHHHHHHHHHHTC-C-SSSHHHHHHHHHHHHHH-TSSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEETTSCTHHHH-
T ss_pred HHHHHHHHHHHHCCC-c-cCCchHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCCcHHHHH-
Confidence 456666666665542 2 45677788888888887 55699999999999999999531 3456788888888888443
Q ss_pred HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH
Q 011959 198 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277 (474)
Q Consensus 198 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~ 277 (474)
.+...|..+...+.....+ .+ |+++|++.+++ ++++|+ +++++|.+.+ +++|.++|+
T Consensus 92 ~~~~~g~~~~~~~~~~~~~----------~~---d~~~l~~~l~~---~~~~v~---~~n~~G~~~~----l~~i~~l~~ 148 (373)
T 3frk_A 92 AVSYTGAKPIFVEPDIRTY----------NI---DPSLIESAITE---KTKAII---AVHLYGQPAD----MDEIKRIAK 148 (373)
T ss_dssp HHHHHSCEEEEECEETTTT----------EE---CGGGTGGGCCT---TEEEEE---EECCTTCCCC----HHHHHHHHH
T ss_pred HHHHcCCEEEEEecccccc----------Cc---CHHHHHHhcCC---CCeEEE---EECCCcCccc----HHHHHHHHH
Confidence 3444444322111100000 00 78888887763 677777 3456788777 999999999
Q ss_pred HhCCEEEEeccccCcccCCCccccccCCCCceeehh----hhcCC-CcceEEEEec-HHHHHhhcC---CCC------cc
Q 011959 278 ENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLG----KIIGG-GLPVGAYGGR-RDIMEMVAP---AGP------MY 342 (474)
Q Consensus 278 ~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~s----K~l~~-G~~iG~~~~~-~~i~~~~~~---~~~------~~ 342 (474)
+||++||+||+|+.. ..+....++..+|++++| |.+++ |. .|+++++ +++.+.+.. .+. ..
T Consensus 149 ~~~~~li~D~a~~~g---~~~~~~~~~~~~d~~~~S~~~~K~l~~~g~-gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 224 (373)
T 3frk_A 149 KYNLKLIEDAAQAHG---SLYKGMKVGSLGDAAGFSFYPAKNLGSLGD-GGAVVTNDKDLAEKIKALSNYGSEKKYHHIY 224 (373)
T ss_dssp HHTCEEEEECTTCTT---CEETTEETTSSSSEEEEECCTTSSSCCSSS-CEEEEESCHHHHHHHHHHHBTTCSBTTBCCS
T ss_pred HcCCEEEEECCcccC---CEECCEeccccccEEEEeCcCCCccCccce-eEEEEeCCHHHHHHHHHHHhcCcccCCcccc
Confidence 999999999999622 111223445556888766 99987 64 7888775 456555442 110 11
Q ss_pred cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe-eeceeEEEEEecCCCcCcccccc
Q 011959 343 QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-YISGMFGFFFTEGPVYNFEDAKK 421 (474)
Q Consensus 343 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~~~~~~~~~ 421 (474)
.+.++..+++.++.+...++.+ ++..++.+++.+++++.|.++. ..++.... ....+..+.+...
T Consensus 225 ~g~~~~~~~~~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~---------- 290 (373)
T 3frk_A 225 KGFNSRLDELQAGFLRVKLKYL--DKWNEERRKIAQKYIAGINNPN--VIIPVEADYAKHVWYTFVIRSE---------- 290 (373)
T ss_dssp CCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHCCCTT--EECCCCCTTEECCCSSEEEEES----------
T ss_pred ccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCc--eEeccCCCCCceeeEEEEEEeC----------
Confidence 1234456777777766666543 3455666666666666654432 11110000 1111111111110
Q ss_pred cchHHHHHHHHHHHHCCeEecccCC---------------------------cceEEe--cCCcHHHHHHHHHHHHHHHh
Q 011959 422 SETTKFARFYRGMLEEGVYFAPSQF---------------------------EAGFTS--LAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 422 ~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------------~~~~~~--~~~t~e~i~~~l~~l~~~~~ 472 (474)
....+.+.|.++||.+.+... ..++++ ..+|++||++++++|+++..
T Consensus 291 ----~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~ 366 (373)
T 3frk_A 291 ----KRDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKL 366 (373)
T ss_dssp ----SHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC-
T ss_pred ----CHHHHHHHHHHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhh
Confidence 135788999999999875431 124664 56799999999999987654
No 188
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.88 E-value=6.2e-22 Score=197.91 Aligned_cols=232 Identities=15% Similarity=0.123 Sum_probs=164.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHh----cCCCCccCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK----AGSGVATLGL 211 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~----~g~~~~~~~~ 211 (474)
+.++...+|+++++++. +.+.+++++||++|++.++. ....++.||+.++.||+........ .|
T Consensus 64 ~~~p~~~~l~~~la~l~-g~~~~~~~~sG~~Ai~~~~~---l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g-------- 131 (400)
T 3nmy_A 64 THNPTRFAYERCVAALE-GGTRAFAFASGMAATSTVME---LLDAGSHVVAMDDLYGGTFRLFERVRRRTAG-------- 131 (400)
T ss_dssp TCCHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHT---TSCTTCEEEEESSCCHHHHHHHHHTHHHHHC--------
T ss_pred CCCHHHHHHHHHHHHHh-CCCCEEEecCHHHHHHHHHH---HcCCCCEEEEeCCCchHHHHHHHHhhHhhcC--------
Confidence 45677788888888887 45688999999999998544 3445678888888888754433221 12
Q ss_pred CCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccC
Q 011959 212 PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG 291 (474)
Q Consensus 212 ~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g 291 (474)
.++..++++|++++++.++. ++++|++|+++|++|.+.+ +++|+++|++||++||+||+|+.
T Consensus 132 -----------~~~~~v~~~d~~~l~~~i~~---~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~livDe~~~~ 193 (400)
T 3nmy_A 132 -----------LDFSFVDLTDPAAFKAAIRA---DTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLTVVDNTFAS 193 (400)
T ss_dssp -----------CEEEEECTTSHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTH
T ss_pred -----------eEEEEECCCCHHHHHHHhcc---CCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCcc
Confidence 13666777899999999863 6899999999999999998 99999999999999999999952
Q ss_pred cccCCCccccccCCCCceeehhhhcCC-CcceEE--E-EecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCC
Q 011959 292 FRLAYGGAQEYFGVTPDLTTLGKIIGG-GLPVGA--Y-GGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 367 (474)
Q Consensus 292 ~r~g~~~~~~~~g~~pdi~t~sK~l~~-G~~iG~--~-~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~ 367 (474)
.. .+....+|.++.+.+++|.++| |.++|+ + ..++++++.+.. .....+...+|+.+..++..++.+ +
T Consensus 194 ~~---~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~---~~~~~g~~~~~~~a~~~l~~l~~l--~ 265 (400)
T 3nmy_A 194 PM---LQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAF---LQNSIGGVQGPFDSFLALRGLKTL--P 265 (400)
T ss_dssp HH---HCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHH---HHHHHCCBCCHHHHHHHHHHHTTH--H
T ss_pred cc---cCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHH---HHHhcCCCCCHHHHHHHHHhHhHH--H
Confidence 21 1111224555555579999995 566655 4 347778777752 223345677888888877776543 2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCeeEE------------------eeeceeEEEEEe
Q 011959 368 GTYEYLNKITGELTQGIIDAGKKAGHAICG------------------GYISGMFGFFFT 409 (474)
Q Consensus 368 ~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v------------------~~~g~~~~i~~~ 409 (474)
...++..++.+.+.+.|++ ++.+..+ ++.|.|++|++.
T Consensus 266 ~r~~~~~~~a~~l~~~L~~----~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~ 321 (400)
T 3nmy_A 266 LRMRAHCENALALAQWLET----HPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLK 321 (400)
T ss_dssp HHHHHHHHHHHHHHHHHTT----CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHc----CCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeC
Confidence 3445555666666655543 4544444 678999999985
No 189
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.88 E-value=8.1e-22 Score=195.39 Aligned_cols=307 Identities=13% Similarity=0.084 Sum_probs=194.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHh-hcCCcEEEEEeCCCCCC
Q 011959 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARA-FTGRERIIKFEGCYHGH 194 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~-~~~~~~ii~~~~~yhg~ 194 (474)
.+|++++++.++++++. ..+.....++.+.+++++ +.+++++++||++|++.+++.++. ..++++|++.+++||+.
T Consensus 11 ~~~~v~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~-~~~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~ 87 (375)
T 2fnu_A 11 LDKEDKKAVLEVLNSKQ--LTQGKRSLLFEEALCEFL-GVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVAT 87 (375)
T ss_dssp CCHHHHHHHHHHHTSSC--CSSSHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHH
T ss_pred CCHHHHHHHHHHHHcCc--ccCChHHHHHHHHHHHHh-CCCeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhH
Confidence 58999999999987642 234666788888888888 455999999999999999996421 34567888888888885
Q ss_pred chhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHH
Q 011959 195 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 274 (474)
Q Consensus 195 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~ 274 (474)
...+ ...|..+...+... .+ ..|+++|++.+++ ++++|++..+ +|.+.+ +++|.+
T Consensus 88 ~~~~-~~~g~~~~~~~~~~-~~-------------~~d~~~l~~~i~~---~~~~v~~~~~---tG~~~~----l~~i~~ 142 (375)
T 2fnu_A 88 ANML-LESGYTPVFAGIKN-DG-------------NIDELALEKLINE---RTKAIVSVDY---AGKSVE----VESVQK 142 (375)
T ss_dssp HHHH-HHTTCEEEECCBCT-TS-------------SBCGGGSGGGCCT---TEEEEEEECG---GGCCCC----HHHHHH
T ss_pred HHHH-HHCCCEEEEeccCC-CC-------------CCCHHHHHhhcCc---CceEEEEeCC---cCCccC----HHHHHH
Confidence 5443 33443322211100 00 0177888877753 5676665544 788877 999999
Q ss_pred HHHHhCCEEEEeccccCc-ccCCCccccccCCCCc--eeehh--hhcCCCcceEEEEe-c-HHHHHhhcCCCCcc-----
Q 011959 275 ITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD--LTTLG--KIIGGGLPVGAYGG-R-RDIMEMVAPAGPMY----- 342 (474)
Q Consensus 275 l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pd--i~t~s--K~l~~G~~iG~~~~-~-~~i~~~~~~~~~~~----- 342 (474)
+|++||++||+||+|+.+ ... ...++..+| +.++| |.+++| +|++++ + +++++.+.......
T Consensus 143 l~~~~~~~li~D~a~~~~~~~~----~~~~~~~~~i~~~s~s~~K~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (375)
T 2fnu_A 143 LCKKHSLSFLSDSSHALGSEYQ----NKKVGGFALASVFSFHAIKPITTA--EGGAVVTNDSELHEKMKLFRSHGMLKKD 216 (375)
T ss_dssp HHHHHTCEEEEECTTCTTCEET----TEETTSSSSEEEEECCTTSSSCCS--SCEEEEESCHHHHHHHHHHTBTTEEESS
T ss_pred HHHHcCCEEEEECccccCCeEC----CeeccccCCeEEEeCCCCCCcccc--CceEEEeCCHHHHHHHHHHHhcCCcccc
Confidence 999999999999999643 211 112232234 44788 999764 788866 3 67776654211000
Q ss_pred --------cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE-----eeeceeEEEEEe
Q 011959 343 --------QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-----GYISGMFGFFFT 409 (474)
Q Consensus 343 --------~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-----~~~g~~~~i~~~ 409 (474)
...++..+++.++++...++.+ ++..++.+++.+++.+.|+++. ++.... ...+.++++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 291 (375)
T 2fnu_A 217 FFEGEVKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDNP---YFTPLHPLLKDKSSNHLYPILMH 291 (375)
T ss_dssp SSCEEESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTCS---SEEESGGGCSSCCCCSCEEEEEC
T ss_pred ccccccccccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC---CccccCCCCCCCcceEEEEEEeC
Confidence 1112355676666665544322 3566667777777777776531 111100 112334455553
Q ss_pred cCCCcCcccccccchH-HHHHHHHHHHHCCeEecccC-----------------C--------cceEEecC--CcHHHHH
Q 011959 410 EGPVYNFEDAKKSETT-KFARFYRGMLEEGVYFAPSQ-----------------F--------EAGFTSLA--HSSDDIQ 461 (474)
Q Consensus 410 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~Gv~v~~~~-----------------~--------~~~~~~~~--~t~e~i~ 461 (474)
.. .. ....+.+.|.++||.+.... . ..+|+++. +|++|++
T Consensus 292 ~~------------~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~ 359 (375)
T 2fnu_A 292 QK------------FFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQ 359 (375)
T ss_dssp GG------------GGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred cc------------ccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHH
Confidence 21 00 23578888999999987311 0 24677644 5999999
Q ss_pred HHHHHHHHHHhh
Q 011959 462 HTITAAEKVLRQ 473 (474)
Q Consensus 462 ~~l~~l~~~~~~ 473 (474)
+++++|++++++
T Consensus 360 ~~~~~l~~~~~~ 371 (375)
T 2fnu_A 360 NIAHSVLKTFES 371 (375)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 190
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.88 E-value=4.3e-21 Score=197.77 Aligned_cols=340 Identities=14% Similarity=0.058 Sum_probs=205.7
Q ss_pred CCCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCC-----CCHHHHHHHHHHHhhCC-C-CCeEEEeCCHHHHHH
Q 011959 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGA-----PCLLENVLAEMVISAVP-S-IEMVRFVNSGTEACM 169 (474)
Q Consensus 97 dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-----~~~~~~~la~~l~~~~~-~-~~~v~~~~sGseA~~ 169 (474)
.+..|+|+..+ +..++.+++++.....+.....+ ..+++.++.++++++++ + .+.++|++||++|+.
T Consensus 99 ~~~~yl~~~~~------~~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~ 172 (497)
T 2qma_A 99 QHPDCIAHLHT------PPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQ 172 (497)
T ss_dssp TSTTBCSSSCC------CCBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHH
T ss_pred CCCCeeEeCCC------CCcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHH
Confidence 34556665544 33568888887665543221111 23567778888999985 2 378999999999999
Q ss_pred HHHHHhHhh------------cC-----CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-
Q 011959 170 GVLRLARAF------------TG-----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN- 231 (474)
Q Consensus 170 ~al~~ar~~------------~~-----~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 231 (474)
.+++.+|.. .| ++..|+.....|......+...|.+. .++..+|.+
T Consensus 173 ~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~----------------~~v~~v~~~~ 236 (497)
T 2qma_A 173 MGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGE----------------KAVMTVDANA 236 (497)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCG----------------GGEEEECBCT
T ss_pred HHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCc----------------ccEEEEecCC
Confidence 999987632 11 23255555556665555554444321 012333332
Q ss_pred ----CHHHHHHHHhcC---CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCcccccc
Q 011959 232 ----DVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYF 303 (474)
Q Consensus 232 ----d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~ 303 (474)
|+++|++.+++. +..+.+|+++..++++|.+.| +++|.++|++||++|++|++|.++ .... +.....
T Consensus 237 ~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~ 311 (497)
T 2qma_A 237 DGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLK 311 (497)
T ss_dssp TSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGT
T ss_pred CCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhc
Confidence 788999988742 112447777777778899888 999999999999999999999887 5433 332334
Q ss_pred CC-CCceee--hhhhcCCCcceEEEEecHH-HHHhhcCCCCcc-cccCCCCChHHH----------HHHHHHHHHhcC--
Q 011959 304 GV-TPDLTT--LGKIIGGGLPVGAYGGRRD-IMEMVAPAGPMY-QAGTLSGNPLAM----------TAGIHTLKRLKE-- 366 (474)
Q Consensus 304 g~-~pdi~t--~sK~l~~G~~iG~~~~~~~-i~~~~~~~~~~~-~~~t~~~~~~~~----------aaa~aal~~~~~-- 366 (474)
++ .+|+++ ++|++++++++|+++++++ .++.+.....+. ...+...++... .+..++++.+..
T Consensus 312 gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g 391 (497)
T 2qma_A 312 GVERAHSISVDFHKLFYQTISCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKA 391 (497)
T ss_dssp TGGGCSEEEEETTTTTCCCSSCEEEEESCGGGGGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHH
T ss_pred CcccCCEEEEcchhccCCCcceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHH
Confidence 55 678775 5999998789999987644 345443211111 111111122211 122344554432
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc-
Q 011959 367 -PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS- 444 (474)
Q Consensus 367 -~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~- 444 (474)
+++.++..++++++.+.|++.. ++.......+.++.+.+..... ........+.+.|.++|+++.+.
T Consensus 392 ~~~~~~~~~~~a~~l~~~L~~~~---~~~~~~~~~~~~v~f~~~~~~~--------~~~~l~~~l~~~l~~~G~~~~~~~ 460 (497)
T 2qma_A 392 LGDMYDHLLAQTLEVADMIRTND---QFELLAEPSLSTVLFRATHETA--------DLDELNKALRLEALTRGIAVLGET 460 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCT---TEEECSCCSSSEEEEEECCSSS--------CHHHHHHHHHHHHHHHTSCBCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCC---CeEEEcCCCceEEEEEEcCCcc--------CHHHHHHHHHHHHHhCCCEEEEee
Confidence 3456667777777777776531 1111112345566776643210 01122356778889999988653
Q ss_pred ---CCcceEEec---CCcHHHHHHHHHHHHHHHhhC
Q 011959 445 ---QFEAGFTSL---AHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 445 ---~~~~~~~~~---~~t~e~i~~~l~~l~~~~~~~ 474 (474)
+...+|+++ .+|++++++++++|+++++++
T Consensus 461 ~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 496 (497)
T 2qma_A 461 IVDGKTALKFTILNPCLTTSDFESLLSKINMLAVEL 496 (497)
T ss_dssp EETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 223567654 679999999999999998764
No 191
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.88 E-value=1.8e-21 Score=189.69 Aligned_cols=275 Identities=13% Similarity=0.032 Sum_probs=182.1
Q ss_pred HHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHH---hcCCCCccCCCCCCCCCCC
Q 011959 143 VLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV---KAGSGVATLGLPDSPGVPK 219 (474)
Q Consensus 143 ~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~---~~g~~~~~~~~~~~~g~~~ 219 (474)
+|.+.+++++ +.+..++++||++|++.+++.. ..++++|++.++.||+....... ..|.
T Consensus 2 ~l~~~la~~~-g~~~~i~~~sG~~a~~~~~~~~--~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~--------------- 63 (331)
T 1pff_A 2 ALEGKIAKLE-HAEACAATASGMGAIAASVWTF--LKAGDHLISDDCLYGCTHALFEHQLRKFGV--------------- 63 (331)
T ss_dssp HHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHH--CCTTCEEEEESCCCHHHHHHHHTHHHHTTC---------------
T ss_pred hHHHHHHHHh-CCCeEEEeCChHHHHHHHHHHh--cCCCCEEEEcCCCcchHHHHHHHHHHhcCC---------------
Confidence 3455555555 4457788888999999999952 34567899999999885444321 1221
Q ss_pred CCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHH-hCCEEEEeccccCcccCCCc
Q 011959 220 GATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE-NGALLIFDEVMTGFRLAYGG 298 (474)
Q Consensus 220 ~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~-~g~llI~DEv~~g~r~g~~~ 298 (474)
++..++..|++++++.++ +++++|++++++|++|.+.+ +++|.++|++ ||+++|+||+|+.+.....
T Consensus 64 ----~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~~~~~~- 131 (331)
T 1pff_A 64 ----EVDFIDMAVPGNIEKHLK---PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASPILTNP- 131 (331)
T ss_dssp ----EEEEECTTSTTHHHHTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHHHHCCG-
T ss_pred ----EEEEeCCCCHHHHHHhhc---CCCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCcccccCCh-
Confidence 344555668889988886 36899999999999999998 9999999999 9999999999963311111
Q ss_pred cccccCCCCceeehhhhcCC-Ccc-eEEEEecH-HHHHhhcCCCCcccc-cCCCCChHHHHHHHHHHHHhcCCCHHHHHH
Q 011959 299 AQEYFGVTPDLTTLGKIIGG-GLP-VGAYGGRR-DIMEMVAPAGPMYQA-GTLSGNPLAMTAGIHTLKRLKEPGTYEYLN 374 (474)
Q Consensus 299 ~~~~~g~~pdi~t~sK~l~~-G~~-iG~~~~~~-~i~~~~~~~~~~~~~-~t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 374 (474)
. .++....+.+++|.+++ |.| +|++++++ ++++.+.+ .... .+.+.+++++.++.++++.+. ...++..
T Consensus 132 -~-~~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~ 204 (331)
T 1pff_A 132 -L-DLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQ---GIKDITGAIISPHDAWLITRGTLTLD--MRVKRAA 204 (331)
T ss_dssp -G-GGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHT---CCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred -h-hcCCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHH---HHHhhcCCCCCHHHHHHHHcCcchHH--HHHHHHH
Confidence 1 23433334479999984 788 79999998 89888874 2233 345778888888777776542 2334444
Q ss_pred HHHHHHHHHHHHHh----------hhcC-Ce---eEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeE
Q 011959 375 KITGELTQGIIDAG----------KKAG-HA---ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY 440 (474)
Q Consensus 375 ~~~~~l~~~L~~~~----------~~~~-~~---~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 440 (474)
++.+.+.+.|++.. .+.+ +. ...++.|.++.+.+.+ ...+.+.|.++||+
T Consensus 205 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~gI~ 268 (331)
T 1pff_A 205 ENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG----------------LEKAKKVLDNCHVV 268 (331)
T ss_dssp HHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS----------------HHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC----------------HHHHHHHHHhCCCc
Confidence 55555555554321 0011 00 0113457777777631 14566777888997
Q ss_pred ecccC------------------------------CcceEEe--cCCcHHHHHHHHHHHHHH
Q 011959 441 FAPSQ------------------------------FEAGFTS--LAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 441 v~~~~------------------------------~~~~~~~--~~~t~e~i~~~l~~l~~~ 470 (474)
+.+.. ...+|++ ...|+++++.++++|+++
T Consensus 269 ~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 269 SLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp EECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred eeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 64321 2345664 566889999998888754
No 192
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.88 E-value=6.1e-22 Score=196.09 Aligned_cols=301 Identities=14% Similarity=0.049 Sum_probs=193.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchh
Q 011959 118 DQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 197 (474)
Q Consensus 118 p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~ 197 (474)
|++.+++.+.+..+. .++.....++.+.+++++ +.+++++++||++|++.+++.++ ..++++|++..++|++....
T Consensus 16 ~~v~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~-~~~~~~~~~sGt~al~~al~~~~-~~~gd~Vi~~~~~~~~~~~~ 91 (367)
T 3nyt_A 16 DKIDAGIQRVLRHGQ--YILGPEVTELEDRLADFV-GAKYCISCANGTDALQIVQMALG-VGPGDEVITPGFTYVATAET 91 (367)
T ss_dssp HHHHHHHHHHHHHCC--CSSCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCTHHHHH
T ss_pred HHHHHHHHHHHhcCC--ccCChHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHhC-CCCcCEEEECCCccHHHHHH
Confidence 456666666665542 235677788888888887 45699999999999999999642 34567888888888774443
Q ss_pred HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHH
Q 011959 198 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277 (474)
Q Consensus 198 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~ 277 (474)
+...|..+...+.....+ .-|+++|++.++ +++++|+++ +++|...+ +++|+++|+
T Consensus 92 -~~~~G~~~~~~~~~~~~~-------------~~d~~~l~~~i~---~~~~~v~~~---~~~G~~~~----~~~i~~la~ 147 (367)
T 3nyt_A 92 -VALLGAKPVYVDIDPRTY-------------NLDPQLLEAAIT---PRTKAIIPV---SLYGQCAD----FDAINAIAS 147 (367)
T ss_dssp -HHHTTCEEEEECBCTTTC-------------SBCGGGTGGGCC---TTEEEECCB---CGGGCCCC----HHHHHHHHH
T ss_pred -HHHcCCEEEEEecCCccC-------------CcCHHHHHHhcC---cCCcEEEee---CCccChhh----HHHHHHHHH
Confidence 334444322211110000 017888888875 367888743 34576666 999999999
Q ss_pred HhCCEEEEecccc-Cc-ccCCCccccccCCCCceeehh----hhcCC-CcceEEEEe-cHHHHHhhcCCCCc--------
Q 011959 278 ENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG----KIIGG-GLPVGAYGG-RRDIMEMVAPAGPM-------- 341 (474)
Q Consensus 278 ~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pdi~t~s----K~l~~-G~~iG~~~~-~~~i~~~~~~~~~~-------- 341 (474)
+||++||+||+|+ |. ..+. ..+...|++++| |.+++ |. .|+++. ++++++.+......
T Consensus 148 ~~~~~li~D~a~~~g~~~~~~-----~~~~~~di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~~~ 221 (367)
T 3nyt_A 148 KYGIPVIEDAAQSFGASYKGK-----RSCNLSTVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRYHH 221 (367)
T ss_dssp HTTCCBEEECTTTTTCEETTE-----ETTSSSSEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETTEE
T ss_pred HcCCEEEEECccccCCeECCe-----eccCCCCEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCcee
Confidence 9999999999995 44 3322 222233887665 99997 76 888877 56777666421110
Q ss_pred -ccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeE-EeeeceeEEEEEecCCCcCcccc
Q 011959 342 -YQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-GGYISGMFGFFFTEGPVYNFEDA 419 (474)
Q Consensus 342 -~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~~~g~~~~i~~~~~~~~~~~~~ 419 (474)
..+.++..+++.++++++.++.+ ++..++.+++.+++++.|.++....+.... ......++.+.+.
T Consensus 222 ~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 289 (367)
T 3nyt_A 222 IRVGVNSRLDTLQAAILLPKLEIF--EEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD---------- 289 (367)
T ss_dssp CSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS----------
T ss_pred eccCcCCCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC----------
Confidence 11346778899999988888755 456677778888888888776321111100 0111112222221
Q ss_pred cccchHHHHHHHHHHHHCCeEecccCC-c-----------------------ceEEe--cCCcHHHHHHHHHHHHHH
Q 011959 420 KKSETTKFARFYRGMLEEGVYFAPSQF-E-----------------------AGFTS--LAHSSDDIQHTITAAEKV 470 (474)
Q Consensus 420 ~~~~~~~~~~~~~~l~~~Gv~v~~~~~-~-----------------------~~~~~--~~~t~e~i~~~l~~l~~~ 470 (474)
....+.+.|.++||.+.+... + .++++ ...|++|++++++.+.+.
T Consensus 290 ------~~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~ 360 (367)
T 3nyt_A 290 ------NRESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL 360 (367)
T ss_dssp ------SHHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred ------CHHHHHHHHHHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 125788899999998865432 0 12454 466999999999998764
No 193
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.88 E-value=4.9e-21 Score=191.45 Aligned_cols=322 Identities=16% Similarity=0.069 Sum_probs=198.1
Q ss_pred CHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCc
Q 011959 117 DDQVLAALGETMKKGTSFGA-PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 195 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~ 195 (474)
+|++++++.+.++.+ +.. ..+...++.+.+++++ +.+++++++||++|++.+++..+ ..++++|++.+++|++..
T Consensus 11 ~~~v~~a~~~~~~~~--~~~~~g~~~~~l~~~la~~~-~~~~v~~~~ggt~al~~~~~~l~-~~~gd~Vl~~~~~~~~~~ 86 (394)
T 1o69_A 11 GGNELKYIEEVFKSN--YIAPLGEFVNRFEQSVKDYS-KSENALALNSATAALHLALRVAG-VKQDDIVLASSFTFIASV 86 (394)
T ss_dssp -CCHHHHHHHHHHHT--TTSCTTHHHHHHHHHHHHHH-CCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCGGGT
T ss_pred CHHHHHHHHHHHHcC--CccCCChHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHcC-CCCCCEEEECCCccHHHH
Confidence 467888888888763 221 1345677888888777 56899999999999999999532 345678999999998865
Q ss_pred hhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHH
Q 011959 196 DPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRI 275 (474)
Q Consensus 196 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l 275 (474)
..+. ..|..+..++.. ..+ ..|+++|++.+++.++++++|++++ ++|...+ +++|.++
T Consensus 87 ~~~~-~~g~~~~~v~~~-~~~-------------~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~----l~~i~~l 144 (394)
T 1o69_A 87 APIC-YLKAKPVFIDCD-ETY-------------NIDVDLLKLAIKECEKKPKALILTH---LYGNAAK----MDEIVEI 144 (394)
T ss_dssp HHHH-HTTCEEEEECBC-TTS-------------SBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC----HHHHHHH
T ss_pred HHHH-HcCCEEEEEEeC-CCC-------------CcCHHHHHHHHhcccCCceEEEEEC---CCCChhh----HHHHHHH
Confidence 4443 334322221111 000 0189999999975433577888876 3565555 9999999
Q ss_pred HHHhCCEEEEecccc-Cc-ccCCCccccccCCCCceeeh--hhhcCCCcceEEEEec-HHHHHhhcCCCCcc-------c
Q 011959 276 TKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTL--GKIIGGGLPVGAYGGR-RDIMEMVAPAGPMY-------Q 343 (474)
Q Consensus 276 ~~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pdi~t~--sK~l~~G~~iG~~~~~-~~i~~~~~~~~~~~-------~ 343 (474)
|++||++||+||+|+ |+ ..+.... . ++ ..|+.++ +|.++ |.++|+++++ +++++.+....... .
T Consensus 145 ~~~~~~~li~Dea~~~g~~~~~~~~~-~-~~-~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 220 (394)
T 1o69_A 145 CKENDIVLIEDAAEALGSFYKNKALG-T-FG-EFGVYSYNGNKIIT-TSGGGMLIGKNKEKIEKARFYSTQARENCLHYE 220 (394)
T ss_dssp HHHTTCEEEEECTTCTTCEETTEETT-S-SS-SEEEEECCTTSSSC-CSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCC
T ss_pred HHHcCCEEEEECcCcccceeCCcccc-c-cc-CcEEEEEeCCccCC-CCCceEEEECCHHHHHHHHHHHHhccccCcccc
Confidence 999999999999997 77 4432110 1 11 3577788 56665 5689999995 78877765211110 0
Q ss_pred ----ccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeece--eEEEEEecCC-----
Q 011959 344 ----AGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG--MFGFFFTEGP----- 412 (474)
Q Consensus 344 ----~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~--~~~i~~~~~~----- 412 (474)
+..++.+++.+++++..++.++ +..++++++.+++++.|.++ .+...... ...+. ++.+.+....
T Consensus 221 ~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~-~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~ 296 (394)
T 1o69_A 221 HLDYGYNYRLSNVLGAIGVAQMEVLE--QRVLKKREIYEWYKEFLGEY-FSFLDELE-NSRSNRWLSTALINFDKNELNA 296 (394)
T ss_dssp CSSCCCBCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTT-EECCCCCT-TEECCCSSEEEEESCCGGGSCC
T ss_pred ccccCcccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccc-ccccCCCC-CCcceeEEEEEEecchhhcccc
Confidence 1112246677777666555443 36677788888888887664 21110000 00122 3455553110
Q ss_pred CcCccccccc---chHHHHHHHHHHHHCCeEecccCCc------------------------ceEE--ecCCcHHHHHHH
Q 011959 413 VYNFEDAKKS---ETTKFARFYRGMLEEGVYFAPSQFE------------------------AGFT--SLAHSSDDIQHT 463 (474)
Q Consensus 413 ~~~~~~~~~~---~~~~~~~~~~~l~~~Gv~v~~~~~~------------------------~~~~--~~~~t~e~i~~~ 463 (474)
..++...... .......+.+.|.++||.++++..+ .+++ ....|++|++++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~ 376 (394)
T 1o69_A 297 CQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEI 376 (394)
T ss_dssp CCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHH
T ss_pred ccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHH
Confidence 0000000000 0123467889999999999876321 0111 234799999999
Q ss_pred HHHHHHHHh
Q 011959 464 ITAAEKVLR 472 (474)
Q Consensus 464 l~~l~~~~~ 472 (474)
+++|+++++
T Consensus 377 ~~~l~~~~~ 385 (394)
T 1o69_A 377 SKLILKSIK 385 (394)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999998875
No 194
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.88 E-value=1.7e-21 Score=194.49 Aligned_cols=307 Identities=17% Similarity=0.129 Sum_probs=196.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCch
Q 011959 117 DDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHAD 196 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~ 196 (474)
++++.+++.+.+..+. +..+.....+|.+.+++++ +.+++++++||++|++.+++.++ ...+++|++.+++|++...
T Consensus 35 ~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~la~~~-~~~~~i~~~~gt~al~~~l~~~~-~~~gd~vl~~~~~~~~~~~ 111 (391)
T 3dr4_A 35 DGNERDYVLECMDTTW-ISSVGRFIVEFEKAFADYC-GVKHAIACNNGTTALHLALVAMG-IGPGDEVIVPSLTYIASAN 111 (391)
T ss_dssp CSSHHHHHHHHHHHTC-CSSCSHHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHHHT-CCTTCEEEEESSSCTHHHH
T ss_pred CHHHHHHHHHHHHcCC-ccCCChHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCchHHHHH
Confidence 4778888888887643 3235677788888888888 45689999999999999999632 4456789999999988644
Q ss_pred hHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHH
Q 011959 197 PFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (474)
Q Consensus 197 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (474)
.+ ...|..+..++.....+. -|+++|++.++ +++++|+++ +++|.+.+ +++|.++|
T Consensus 112 ~~-~~~g~~~~~~~~~~~~~~-------------~d~~~l~~~~~---~~~~~v~~~---n~tG~~~~----~~~i~~l~ 167 (391)
T 3dr4_A 112 SV-TYCGATPVLVDNDPRTFN-------------LDAAKLEALIT---PRTKAIMPV---HLYGQICD----MDPILEVA 167 (391)
T ss_dssp HH-HHTTCEEEEECBCTTTCS-------------BCGGGSGGGCC---TTEEEECCB---CGGGCCCC----HHHHHHHH
T ss_pred HH-HHCCCEEEEEecCccccC-------------cCHHHHHHhcC---CCceEEEEE---CCCCChhh----HHHHHHHH
Confidence 43 333432222111100000 07788887775 367777743 46787777 99999999
Q ss_pred HHhCCEEEEecccc-Cc-ccCCCccccccCCCCceeehh----hhcCCCcceEEEEec-HHHHHhhcC---CCC------
Q 011959 277 KENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLTTLG----KIIGGGLPVGAYGGR-RDIMEMVAP---AGP------ 340 (474)
Q Consensus 277 ~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pdi~t~s----K~l~~G~~iG~~~~~-~~i~~~~~~---~~~------ 340 (474)
++||++||+||+|+ |. ..+ ...+..+|++++| |++++| +.|+++.+ +++.+.+.. .+.
T Consensus 168 ~~~~~~li~D~a~~~g~~~~~-----~~~~~~~di~~~S~s~~K~l~~g-~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~ 241 (391)
T 3dr4_A 168 RRHNLLVIEDAAEAVGATYRG-----KKSGSLGDCATFSFFGNAIITTG-EGGMITTNDDDLAAKMRLLRGQGMDPNRRY 241 (391)
T ss_dssp HHTTCEEEEECTTCTTCEETT-----EETTSSSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHHBTTCCTTSTT
T ss_pred HHcCCEEEEECcccccceECC-----eeecccCCEEEEECCCCCcCCcC-CeEEEEECCHHHHHHHHHHHhcCCCCCCcc
Confidence 99999999999996 33 222 1233345777655 999764 58888665 456655531 000
Q ss_pred --cccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeE-----EeeeceeEEEEEecCCC
Q 011959 341 --MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAIC-----GGYISGMFGFFFTEGPV 413 (474)
Q Consensus 341 --~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-----v~~~g~~~~i~~~~~~~ 413 (474)
...+..+..+++.+++++..++.+ ++..++.+++.+++++.|.++ ...+... ....+.++.+.+....
T Consensus 242 ~~~~~g~~~~~~~l~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~~~~~~~i~~~~~~- 316 (391)
T 3dr4_A 242 WFPIVGFNYRMTNIQAAIGLAQLERV--DEHLAARERVVGWYEQKLARL--GNRVTKPHVALTGRHVFWMYTVRLGEGL- 316 (391)
T ss_dssp CCSSCCCBCBCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHGGG--TTSEECCCCCTTSCCCCSSEEEEECSSC-
T ss_pred cccccccccCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CccccCcCCCCCCcceeEEEEEEECCcc-
Confidence 001122456677766666655543 446777777888888887765 1211111 1123334566553210
Q ss_pred cCcccccccchHHHHHHHHHHHHCCeEecccCC------------------------cceEEe--cCCcHHHHHHHHHHH
Q 011959 414 YNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF------------------------EAGFTS--LAHSSDDIQHTITAA 467 (474)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~------------------------~~~~~~--~~~t~e~i~~~l~~l 467 (474)
.....++.+.|.++||.+.++.. ..++++ ..+|+|||++++++|
T Consensus 317 ----------~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l 386 (391)
T 3dr4_A 317 ----------STTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAAL 386 (391)
T ss_dssp ----------SSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHH
T ss_pred ----------chhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHH
Confidence 01135788999999999886631 123443 567999999999999
Q ss_pred HHHH
Q 011959 468 EKVL 471 (474)
Q Consensus 468 ~~~~ 471 (474)
++++
T Consensus 387 ~~~l 390 (391)
T 3dr4_A 387 DQVL 390 (391)
T ss_dssp HTTC
T ss_pred HHHh
Confidence 8764
No 195
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.87 E-value=5.4e-21 Score=188.30 Aligned_cols=304 Identities=11% Similarity=0.004 Sum_probs=196.5
Q ss_pred CCHHHHHHHHHHHHhcC-CCC--CC--CHHHHHHHHHHHhhCC--CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEe
Q 011959 116 ADDQVLAALGETMKKGT-SFG--AP--CLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFE 188 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~-~~~--~~--~~~~~~la~~l~~~~~--~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~ 188 (474)
.+|++++++.+.+.+.. .++ ++ .+...++.++++++++ ..+++++++||++|+..+++ .+.++ ++++..
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~---~l~~~-~~i~~~ 90 (362)
T 3ffr_A 15 LYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQ---NCVEK-KSFHCV 90 (362)
T ss_dssp CCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHH---HHCSS-EEEEEE
T ss_pred CCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHH---hccCC-cEEEEc
Confidence 47889999988887643 111 11 2456788888988885 35689999999999999999 45555 777777
Q ss_pred CCCCCCchh-HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHH
Q 011959 189 GCYHGHADP-FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPD 267 (474)
Q Consensus 189 ~~yhg~~~~-~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~ 267 (474)
..+++.... .....|..+..++...... -|+++|+ + .+++++|++++++|++|.+.+
T Consensus 91 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~--------------~d~~~l~--~---~~~~~~v~~~~~~nptG~~~~--- 148 (362)
T 3ffr_A 91 NGSFSKRFYEFAGELGREAYKEEAAFGKG--------------FYPADIT--V---PADAEIICLTHNETSSGVSMP--- 148 (362)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECCTTCC--------------CCGGGCC--C---CTTCCEEEEESEETTTTEECC---
T ss_pred CcHHHHHHHHHHHHhCCCeEEEecCCCCC--------------CCHHHHh--c---cCCccEEEEEcCCCCcceeCC---
Confidence 766663221 2222343222211111001 1677776 2 246788888888899999999
Q ss_pred HHHHHHHHHHHh-CCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCCCC---
Q 011959 268 FLNAIRRITKEN-GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPAGP--- 340 (474)
Q Consensus 268 ~l~~l~~l~~~~-g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~~~--- 340 (474)
+++|.++|++| |++||+||+|... .. . +... .|++ +++|.++++..+|++++++++++.+.+...
T Consensus 149 -l~~i~~la~~~p~~~li~D~a~~~~~~~---~--~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~ 220 (362)
T 3ffr_A 149 -VEDINTFRDKNKDALIFVDAVSSLPYPK---F--DWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRK 220 (362)
T ss_dssp -HHHHTTSGGGSTTSEEEEECTTTTTSSC---C--CTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHhCCCCEEEEecccccCCcc---c--ChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCC
Confidence 99999999999 9999999999632 11 0 1111 5665 578999843347888899998776652100
Q ss_pred ---c-c-----------cccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE----e
Q 011959 341 ---M-Y-----------QAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICG----G 398 (474)
Q Consensus 341 ---~-~-----------~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v----~ 398 (474)
. + ....++.+..++.++.++++.+.+ +...++.+++.+++.+.|+++. ++.... .
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~~~ 297 (362)
T 3ffr_A 221 SIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSK---VFSFGVEDAKL 297 (362)
T ss_dssp CCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCS---SEEESSSCGGG
T ss_pred CCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcc---CceeccCChhh
Confidence 0 0 001345667777777788876544 3455666666666666665530 111100 1
Q ss_pred eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEec--CCcHHHHHHHHHHHHHHH
Q 011959 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSL--AHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 399 ~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~--~~t~e~i~~~l~~l~~~~ 471 (474)
..+.++++.+.+ ...++.+.|.++||.+.++. ...+|+++ ..+++++++++++|++++
T Consensus 298 ~~~~~~~~~~~~---------------~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 298 RSMTTIVANTTM---------------LPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp BCSSEEEEEESS---------------CHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cCCceEEEecCC---------------CHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 124455555532 13678899999999998752 34578864 569999999999998864
No 196
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.87 E-value=4e-20 Score=186.73 Aligned_cols=284 Identities=16% Similarity=0.094 Sum_probs=187.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
.++...+++++++++++ .+..++++||++|+..+++.. ...++.||+.++.|++.........
T Consensus 112 ~~~~~~~l~~~lA~l~g-~~~~v~~~sG~~Ai~~al~~l--~~~Gd~Vi~~~~~y~~~~~~~~~~~-------------- 174 (445)
T 1qgn_A 112 GNPTTVVLEEKISALEG-AESTLLMASGMCASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETIL-------------- 174 (445)
T ss_dssp CCHHHHHHHHHHHHHHT-CSEEEEESCHHHHHHHHHHHH--SCSSCEEEEETTSCHHHHHHHHHTG--------------
T ss_pred CChHHHHHHHHHHHHhC-CCcEEEeCCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHHHHH--------------
Confidence 56777889999988884 457788888999999999842 2345788888888877432211000
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCe-EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEI-AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~-a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (474)
...+.++..++.+|+++|++.++. ++ ++|++|+++|++|.+.+ +++|.++|++||++||+||+|+...
T Consensus 175 --~~~G~~v~~v~~~d~~~l~~ai~~---~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~livD~a~~~~~-- 243 (445)
T 1qgn_A 175 --PKMGITATVIDPADVGALELALNQ---KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFATPL-- 243 (445)
T ss_dssp --GGGTCEEEEECSSCHHHHHHHHHH---SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTT--
T ss_pred --HHcCCEEEEeCCCCHHHHHHHhcc---CCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccc--
Confidence 001124666777899999999984 45 89999999999999998 9999999999999999999996321
Q ss_pred CCccccccCCCCcee--ehhhhcCC-C-cceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHHH
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 371 (474)
. ...+...+|++ +++|.+++ | +++|++++++++++.+.. .........+++.+..++..++.+. ...+
T Consensus 244 -~--~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~---~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~ 315 (445)
T 1qgn_A 244 -N--QKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRN---LHHILGGALNPNAAYLIIRGMKTLH--LRVQ 315 (445)
T ss_dssp -T--CCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHGGGHH--HHHH
T ss_pred -c--CCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHH---HHHHhCCCCCHHHHHHHHHhHHHHH--HHHH
Confidence 1 11233456877 58999995 3 479999999999887752 1111112346777666666665432 2344
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCeeE------------------EeeeceeEEEEEecCCCcCcccccccchHHHHHHHHH
Q 011959 372 YLNKITGELTQGIIDAGKKAGHAIC------------------GGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 433 (474)
Q Consensus 372 ~~~~~~~~l~~~L~~~~~~~~~~~~------------------v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (474)
+..++.+++.+.|++. +.+.. .++.|.++.|++... ......+.+.
T Consensus 316 ~~~~~a~~l~~~L~~~----p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~------------~~~~~~~l~~ 379 (445)
T 1qgn_A 316 QQNSTALRMAEILEAH----PKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD------------LLTTAKFVDA 379 (445)
T ss_dssp HHHHHHHHHHHHHHTC----TTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC----CCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCC------------HHHHHHHHHh
Confidence 5555666677766653 21111 134688889888531 1223445555
Q ss_pred HHHCCeEecccC---------------------------CcceEEecCCcHHHHHHHHHHHHHHHhhC
Q 011959 434 MLEEGVYFAPSQ---------------------------FEAGFTSLAHSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 434 l~~~Gv~v~~~~---------------------------~~~~~~~~~~t~e~i~~~l~~l~~~~~~~ 474 (474)
|...++.+..++ ...+|+++. .||++.+++.|+++++.+
T Consensus 380 l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG--~Edid~li~~L~~al~~~ 445 (445)
T 1qgn_A 380 LKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG--VEDFDDLKADILQALDSI 445 (445)
T ss_dssp CSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC--SSCHHHHHHHHHHHHHHC
T ss_pred CCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec--cCCHHHHHHHHHHHHhhC
Confidence 432333322211 134677765 568999999999998764
No 197
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.86 E-value=2.1e-20 Score=188.39 Aligned_cols=281 Identities=16% Similarity=0.109 Sum_probs=184.3
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHH---HhcCCCCccCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL---VKAGSGVATLGLPD 213 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~---~~~g~~~~~~~~~~ 213 (474)
..+...+++++++++++ .+..++++||++|++.+++.. ..++++||+.++.||+...... ...|.
T Consensus 56 ~~~~~~~l~~~la~~~g-~~~~v~~~sGt~A~~~~l~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~--------- 123 (421)
T 2ctz_A 56 MNPTVDVLEKRLAALEG-GKAALATASGHAAQFLALTTL--AQAGDNIVSTPNLYGGTFNQFKVTLKRLGI--------- 123 (421)
T ss_dssp BCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHHH--CCTTCEEEECSCCCHHHHHHHHTHHHHTTC---------
T ss_pred CChHHHHHHHHHHHHhC-CCceEEecCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHHHHcCC---------
Confidence 45667888888888884 456788888999999999953 4567889999999998655442 22222
Q ss_pred CCCCCCCCCCceEEc-cCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011959 214 SPGVPKGATYETLTA-PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (474)
Q Consensus 214 ~~g~~~~~~~~~~~~-~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (474)
++..+ +.+|++++++.++. ++++|++++++|++|.+.+ +++|+++|++||++||+||+|+++
T Consensus 124 ----------~~~~~~~~~d~~~l~~~i~~---~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~~~ 186 (421)
T 2ctz_A 124 ----------EVRFTSREERPEEFLALTDE---KTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFGMG 186 (421)
T ss_dssp ----------EEEECCTTCCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGGG
T ss_pred ----------EEEEECCCCCHHHHHHhhcc---CCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcccc
Confidence 35556 66789999999863 6899999999999999998 999999999999999999999545
Q ss_pred -ccCCCccccccCCCCcee--ehhhhcCC-CcceEEEEec---HHH----HHhhcCCCCcc-------------------
Q 011959 293 -RLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPVGAYGGR---RDI----MEMVAPAGPMY------------------- 342 (474)
Q Consensus 293 -r~g~~~~~~~~g~~pdi~--t~sK~l~~-G~~iG~~~~~---~~i----~~~~~~~~~~~------------------- 342 (474)
..+.. ++..+|++ +++|.+++ |.|+|++++. .++ ++.+.+....+
T Consensus 187 g~~~~~-----~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r 261 (421)
T 2ctz_A 187 GYLLRP-----LAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKAR 261 (421)
T ss_dssp GTSCCG-----GGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHH
T ss_pred cccCCc-----cccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHH
Confidence 33222 23457877 79999995 7899988664 122 22232110000
Q ss_pred ----cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEE-------------------ee
Q 011959 343 ----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG-------------------GY 399 (474)
Q Consensus 343 ----~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-------------------~~ 399 (474)
.......+++.++++...++.+. ...++..++.+++.+.|.+ ++.+..+ ++
T Consensus 262 ~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~----~p~v~~v~~p~~~~~~~~~~~~~~~~~~ 335 (421)
T 2ctz_A 262 VDGLRDQGQALGPFEAWVVLLGMETLS--LRAERHVENTLHLAHWLLE----QPQVAWVNYPGLPHHPHHDRAQKYFKGK 335 (421)
T ss_dssp HTHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHT----CTTEEEEECTTSTTCTTHHHHHHHHTTC
T ss_pred HHHHHhcCCCCCHHHHHHHHcCcchHH--HHHHHHHHhHHHHHHHHHh----CCCeeEEECCCCCCCCCHHHHHHhccCC
Confidence 01123668888877777775432 2344445566666666654 3322222 46
Q ss_pred eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC---------------------------CcceEEe
Q 011959 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------------------------FEAGFTS 452 (474)
Q Consensus 400 ~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------------------~~~~~~~ 452 (474)
.|.++.|++... ......+.+.+...++.+..++ ...+|++
T Consensus 336 ~g~ivsf~l~~~------------~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS 403 (421)
T 2ctz_A 336 PGAVLTFGLKGG------------YEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLS 403 (421)
T ss_dssp CCSEEEEEETTH------------HHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEE
T ss_pred CceEEEEEeCCC------------HHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEE
Confidence 788999988531 1223344444433333332221 1234555
Q ss_pred cCCcHHHHHHHHHHHHHHH
Q 011959 453 LAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 453 ~~~t~e~i~~~l~~l~~~~ 471 (474)
+ ..|++|++++.|++++
T Consensus 404 ~--g~e~~~~li~~l~~al 420 (421)
T 2ctz_A 404 V--GLEHVEDLKAELKEAL 420 (421)
T ss_dssp C--CSSCHHHHHHHHHHHT
T ss_pred e--CCCCHHHHHHHHHHHh
Confidence 4 4468999999998876
No 198
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.85 E-value=5.7e-20 Score=183.55 Aligned_cols=211 Identities=15% Similarity=0.121 Sum_probs=145.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
+.+...++.+.++++++ .+++++++||++|++.+++ . ...+++||+..+.||+.........
T Consensus 53 ~~~~~~~lr~~la~~~g-~~~~i~~~sGt~a~~~al~-~--~~~gd~Vi~~~~~y~~~~~~~~~~~-------------- 114 (393)
T 1n8p_A 53 QNPNRENLERAVAALEN-AQYGLAFSSGSATTATILQ-S--LPQGSHAVSIGDVYGGTHRYFTKVA-------------- 114 (393)
T ss_dssp CCHHHHHHHHHHHHHTT-CSEEEEESCHHHHHHHHHH-T--SCSSCEEEEESSCCHHHHHHHHHTS--------------
T ss_pred CChhHHHHHHHHHHHhC-CCcEEEECChHHHHHHHHH-H--cCCCCEEEEeCCCchHHHHHHHHHH--------------
Confidence 45666778888888874 4478888899999999998 2 3456789999988887432211000
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHh----CCEEEEeccccCc
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN----GALLIFDEVMTGF 292 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~----g~llI~DEv~~g~ 292 (474)
...+.++..++.+| ++|++.++ +++++|++++++|++|.+.+ +++|.++|++| |++||+||+|+++
T Consensus 115 --~~~G~~v~~v~~~d-~~l~~~i~---~~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~~~~ 184 (393)
T 1n8p_A 115 --NAHGVETSFTNDLL-NDLPQLIK---ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLSP 184 (393)
T ss_dssp --TTTCSCCEEESSHH-HHHHHHSC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTHH
T ss_pred --HHcCcEEEEeCCCh-HHHHHhcc---cCceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCcccc
Confidence 01112356667767 88988886 36899999999999999998 99999999999 9999999999766
Q ss_pred -ccCCCccccccCCCCcee--ehhhhcCC-Ccce-EEEEec-HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC
Q 011959 293 -RLAYGGAQEYFGVTPDLT--TLGKIIGG-GLPV-GAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366 (474)
Q Consensus 293 -r~g~~~~~~~~g~~pdi~--t~sK~l~~-G~~i-G~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 366 (474)
.. ... .++ .|++ +++|.+++ |+|+ |+++++ +++++.+.. .........++..++++..+++.+
T Consensus 185 ~~~-~~~---~~~--~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~---~~~~~g~~~~~~~~~~~~~~l~~~-- 253 (393)
T 1n8p_A 185 YIS-NPL---NFG--ADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQF---LQNAIGAIPSPFDAWLTHRGLKTL-- 253 (393)
T ss_dssp HHC-CGG---GGT--CSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHTTH--
T ss_pred ccC-CHH---HcC--CeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHH---HHHhcCCCCCHHHHHHHHhccchH--
Confidence 42 221 223 5665 79999994 8999 888885 788887762 111112244677777766666533
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q 011959 367 PGTYEYLNKITGELTQGIID 386 (474)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~ 386 (474)
+...++..++.+.+.+.|++
T Consensus 254 ~~~~~~~~~~~~~l~~~L~~ 273 (393)
T 1n8p_A 254 HLRVRQAALSANKIAEFLAA 273 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 22344455555566655544
No 199
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.85 E-value=4.9e-20 Score=184.57 Aligned_cols=213 Identities=15% Similarity=0.137 Sum_probs=148.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
+++...+|.+.++++++ .+..++++||++|+..+++ ....++.|++.++.|++.........
T Consensus 65 ~~p~~~~l~~~la~~~g-~~~~i~~~sG~~ai~~~~~---l~~~gd~Vl~~~~~y~~~~~~~~~~~-------------- 126 (403)
T 3cog_A 65 GNPTRNCLEKAVAALDG-AKYCLAFASGLAATVTITH---LLKAGDQIICMDDVYGGTNRYFRQVA-------------- 126 (403)
T ss_dssp -CHHHHHHHHHHHHHHT-CSEEEEESCHHHHHHHHHT---TSCTTCEEEEESSCCHHHHHHHHHTG--------------
T ss_pred CCchHHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHH---HhCCCCEEEEeCCCcchHHHHHHHHH--------------
Confidence 45666778888888774 3466777789999999987 24566789999999988443221110
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhC-CEEEEeccccCcccC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG-ALLIFDEVMTGFRLA 295 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g-~llI~DEv~~g~r~g 295 (474)
...+.++..++.+|++++++.++ +++++|++++++|++|.+.+ +++|.++|++|| ++||+||+|.++...
T Consensus 127 --~~~G~~v~~v~~~d~~~l~~~i~---~~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~~~~ 197 (403)
T 3cog_A 127 --SEFGLKISFVDCSKIKLLEAAIT---PETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSPYFQ 197 (403)
T ss_dssp --GGGTCEEEEECTTSHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCTTTC
T ss_pred --HHcCCEEEEECCCCHHHHHHhcC---cCCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCcccccC
Confidence 00112466777779999999886 36899999999999999998 999999999999 999999999755211
Q ss_pred CCccccccCCCCcee--ehhhhcCC-C-cceEEEEec-HHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCHH
Q 011959 296 YGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGR-RDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY 370 (474)
Q Consensus 296 ~~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~-~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~ 370 (474)
.. ++...|++ +++|.+++ | +++|+++++ +++++.+.. .....+...+++.+.+++..|+.+ +...
T Consensus 198 ~~-----~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~---~~~~~g~~~~~~~~~~~~~~l~~l--~~r~ 267 (403)
T 3cog_A 198 RP-----LALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRF---LQNSLGAVPSPIDCYLCNRGLKTL--HVRM 267 (403)
T ss_dssp CT-----TTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHH---HHHHHCCCCCHHHHHHHHHHHTTH--HHHH
T ss_pred Cc-----cccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHH---HHHhcCCCCCHHHHHHHHhhhhHH--HHHH
Confidence 11 22346766 79999984 4 589999885 788887762 223234567888888887777543 2234
Q ss_pred HHHHHHHHHHHHHHHH
Q 011959 371 EYLNKITGELTQGIID 386 (474)
Q Consensus 371 ~~~~~~~~~l~~~L~~ 386 (474)
++..++...+.+.|++
T Consensus 268 ~~~~~n~~~l~~~l~~ 283 (403)
T 3cog_A 268 EKHFKNGMAVAQFLES 283 (403)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4444555555555543
No 200
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.85 E-value=2.7e-19 Score=178.44 Aligned_cols=303 Identities=14% Similarity=0.122 Sum_probs=191.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhH-----hhcCCcEEEEEeCC
Q 011959 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR-----AFTGRERIIKFEGC 190 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar-----~~~~~~~ii~~~~~ 190 (474)
-+|++++++.++++++. .++.....++.+.+++++ +.+.+++++||++|++.+++.++ ...++++|++..++
T Consensus 13 ~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~-~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~ 89 (390)
T 3b8x_A 13 WDDLEYKAIQSVLDSKM--FTMGEYVKQYETQFAKTF-GSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVS 89 (390)
T ss_dssp CCHHHHHHHHHHHHHTC--CSSCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSS
T ss_pred CCHHHHHHHHHHHHcCC--CCCChHHHHHHHHHHHHH-CCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCC
Confidence 37999999999987743 235677788888888887 44589999999999999999653 13456789999999
Q ss_pred CCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHH
Q 011959 191 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 269 (474)
Q Consensus 191 yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l 269 (474)
||+....+ ...|..+..++..... ++ |+++|++.+++ ++++|++.+. .|...+ +
T Consensus 90 ~~~~~~~~-~~~g~~~~~~~~~~~~--------------~~~d~~~l~~~i~~---~~~~v~~~~~---~g~~~~----~ 144 (390)
T 3b8x_A 90 WSTTYYPL-QQYGLRVKFVDIDINT--------------LNIDIESLKEAVTD---STKAILTVNL---LGNPNN----F 144 (390)
T ss_dssp CHHHHHHH-HHTTCEEEEECBCTTT--------------CSBCHHHHHHHCCT---TEEEEEEECG---GGCCCC----H
T ss_pred cHHHHHHH-HHcCCEEEEEecCccc--------------cCcCHHHHHHHhCc---CCeEEEEECC---ccChhh----H
Confidence 98865543 3334322221111000 11 89999998863 5777777532 344455 9
Q ss_pred HHHHHHHHHhCCEEEEecccc-CcccCCCccccccCCCCceeehhhhcC----CCcceEEEEecH-HHHHhhc---CCC-
Q 011959 270 NAIRRITKENGALLIFDEVMT-GFRLAYGGAQEYFGVTPDLTTLGKIIG----GGLPVGAYGGRR-DIMEMVA---PAG- 339 (474)
Q Consensus 270 ~~l~~l~~~~g~llI~DEv~~-g~r~g~~~~~~~~g~~pdi~t~sK~l~----~G~~iG~~~~~~-~i~~~~~---~~~- 339 (474)
++|.++|++||++||+||+|+ |... ....+|..+|+.++||..+ +| +.|++++++ ++.+.+. ..+
T Consensus 145 ~~i~~l~~~~~~~li~D~a~~~g~~~----~~~~~g~~~~~~~~s~~~~k~~~~g-~gG~~~~~~~~l~~~~~~~~~~g~ 219 (390)
T 3b8x_A 145 DEINKIIGGRDIILLEDNCESMGATF----NNKCAGTFGLMGTFSSFYSNHIATM-EGGCIVTDDEEIYHILLCIRAHGW 219 (390)
T ss_dssp HHHHHHHTTSCCEEEEECTTCTTCEE----TTEETTSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHHHHTBTTB
T ss_pred HHHHHHHHHcCCEEEEECcCcccCEE----CCcccccccceEEEEccCCCCCccC-CceEEEeCCHHHHHHHHHHHhcCC
Confidence 999999999999999999997 4421 1235677788888776443 33 358888775 6655432 111
Q ss_pred --C------------------cc----cccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCee
Q 011959 340 --P------------------MY----QAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 395 (474)
Q Consensus 340 --~------------------~~----~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 395 (474)
. .+ .+.++..+++.++++++.|+.++ +..++.+++.+++.+.|+++. ++..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~~---~~~~ 294 (390)
T 3b8x_A 220 TRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP--RFISVRRKNAEYFLDKFKDHP---YLDV 294 (390)
T ss_dssp STTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTCS---SEEE
T ss_pred CccccccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCC---Cccc
Confidence 0 00 11233478888888888887653 566677777777777775431 1111
Q ss_pred EEe-eece--eEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC------C-c------------------
Q 011959 396 CGG-YISG--MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ------F-E------------------ 447 (474)
Q Consensus 396 ~v~-~~g~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~------~-~------------------ 447 (474)
... .... .+.+.+.... ......+.+.|.++||.+.+.. . +
T Consensus 295 ~~~~~~~~~~~~~i~~~~~~-----------~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (390)
T 3b8x_A 295 QQETGESSWFGFSFIIKKDS-----------GVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEY 363 (390)
T ss_dssp CCCCSBCCCCEEEEEECTTS-----------CCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHH
T ss_pred CCCCCCcccEEEEEEecCcC-----------cccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHH
Confidence 000 1122 2344443110 0112568888899999887521 1 1
Q ss_pred ----ceEEe--cCCcHHHHHHHHHHH
Q 011959 448 ----AGFTS--LAHSSDDIQHTITAA 467 (474)
Q Consensus 448 ----~~~~~--~~~t~e~i~~~l~~l 467 (474)
.++++ ..+|++|++++++.|
T Consensus 364 ~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 364 LDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp HHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred HhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 13554 467999999999876
No 201
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.84 E-value=4.3e-19 Score=179.84 Aligned_cols=320 Identities=14% Similarity=0.090 Sum_probs=196.1
Q ss_pred CCEEEeccCChhhccCCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhH-
Q 011959 98 GNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLAR- 176 (474)
Q Consensus 98 G~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar- 176 (474)
|+.+|.+... . -++++++++.+++..+. .++.....++.+.+++++ +.+.+++++||++|++.+++..+
T Consensus 30 ~~~~i~~~~~----~---~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~la~~~-g~~~~i~~~sGt~a~~~al~~l~~ 99 (437)
T 3bb8_A 30 GKSVVPPSGK----V---IGTKELQLMVEASLDGW--LTTGRFNDAFEKKLGEYL-GVPYVLTTTSGSSANLLALTALTS 99 (437)
T ss_dssp TTSCBCSCCC----C---CCHHHHHHHHHHHHHCC--CBSCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHTTC
T ss_pred CCccccCCCC----C---CCHHHHHHHHHHHHcCC--cCCChHHHHHHHHHHHHH-CCCcEEEeCCHHHHHHHHHHHhhh
Confidence 5666666432 1 25899999999987643 235667788888888888 45589999999999999999642
Q ss_pred -----h-hcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEE
Q 011959 177 -----A-FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAI 250 (474)
Q Consensus 177 -----~-~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~v 250 (474)
. ...+++|++..++|++....+ ...|..+..++.....+ .+ |+++|++.++. ++++|
T Consensus 100 ~~~~~~~~~~gd~Vi~~~~~~~~~~~~~-~~~g~~~~~v~~~~~~~----------~~---d~~~l~~~i~~---~~~~v 162 (437)
T 3bb8_A 100 PKLGVRALKPGDEVITVAAGFPTTVNPT-IQNGLIPVFVDVDIPTY----------NV---NASLIEAAVSD---KTKAI 162 (437)
T ss_dssp GGGGGGSCCTTCEEEECSSSCHHHHHHH-HHTTCEEEECCEETTTT----------EE---CGGGHHHHCCT---TEEEE
T ss_pred cccccccCCCcCEEEECCCCcHHHHHHH-HHcCCEEEEEeccCccC----------Cc---CHHHHHHhcCC---CCeEE
Confidence 1 344678888888888865443 33343222211100000 00 78889888863 57777
Q ss_pred EEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc-ccCCCccccccCCCCcee--ehhhhcC-CCcceEEE
Q 011959 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYGGAQEYFGVTPDLT--TLGKIIG-GGLPVGAY 325 (474)
Q Consensus 251 i~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~-r~g~~~~~~~~g~~pdi~--t~sK~l~-~G~~iG~~ 325 (474)
++... .|...+ +++|.++|++||++||+||+|+ |. ..+ ..++..+|++ +|+|+.+ +|.++|++
T Consensus 163 ~~~~~---~g~~~~----~~~i~~l~~~~~~~li~D~a~~~g~~~~~-----~~~~~~~d~~~~s~~~~k~l~~g~gg~~ 230 (437)
T 3bb8_A 163 MIAHT---LGNLFD----LAEVRRVADKYNLWLIEDCCDALGSTYDG-----KMAGTFGDIGTVSFYPAKHITMGEGGAV 230 (437)
T ss_dssp EEECG---GGCCCC----HHHHHHHHHHHTCEEEEECTTCTTCEETT-----EETTSSSSEEEEECSTTSSSCCSSCEEE
T ss_pred EEeCC---CCChhc----HHHHHHHHHHcCCEEEEECccccCceECC-----eecccccCEEEEECcCCcCCCCCCeEEE
Confidence 77432 233445 9999999999999999999997 44 311 2344446875 4544444 45678999
Q ss_pred EecHHHHHh----hcCCCCc-------------------------c--------cccCCCCChHHHHHHHHHHHHhcCCC
Q 011959 326 GGRRDIMEM----VAPAGPM-------------------------Y--------QAGTLSGNPLAMTAGIHTLKRLKEPG 368 (474)
Q Consensus 326 ~~~~~i~~~----~~~~~~~-------------------------~--------~~~t~~~~~~~~aaa~aal~~~~~~~ 368 (474)
+++++.+.. +...... + .+..+..+++.+++++++|+.+ ++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~~--~~ 308 (437)
T 3bb8_A 231 FTQSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLERI--EE 308 (437)
T ss_dssp EESCHHHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHHHHH--HH
T ss_pred EeCCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCcccCCCHHHHHHHHHHHHHH--HH
Confidence 988554332 2111000 0 1112234678888888888765 34
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCeeE--E---eeec-eeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEec
Q 011959 369 TYEYLNKITGELTQGIIDAGKKAGHAIC--G---GYIS-GMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA 442 (474)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~--v---~~~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~ 442 (474)
..++.+++.+++++.|.++. +.... . +..+ ..+.+.+... .......+.+.|.++||.++
T Consensus 309 ~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~L~~~GI~v~ 374 (437)
T 3bb8_A 309 FVEKRKANFKYLKDALQSCA---DFIELPEATENSDPSWFGFPITLKED-----------SGVSRIDLVKFLDEAKVGTR 374 (437)
T ss_dssp HHHHHHHHHHHHHHHGGGGT---TTEECCCCCTTEECCCSSEEEEECGG-----------GSSCHHHHHHHHHHTTBCCB
T ss_pred HHHHHHHHHHHHHHHhhccC---CccccCCCCCCCceeeEEEEEEECCc-----------CcCcHHHHHHHHHHCCCcee
Confidence 55666777777777776541 11100 0 0001 1122222210 00113578889999999987
Q ss_pred ccCCc----------------------------ceEEe--cCCcHHHHHHHHHHHHHHHh
Q 011959 443 PSQFE----------------------------AGFTS--LAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 443 ~~~~~----------------------------~~~~~--~~~t~e~i~~~l~~l~~~~~ 472 (474)
+...+ .++++ ..+|++|+++++++|+++++
T Consensus 375 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~i~~~l~~~~~ 434 (437)
T 3bb8_A 375 LLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHDHLDYVVSKFEEFFG 434 (437)
T ss_dssp CCTTSSGGGSGGGSSCCCEECSCCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHTT
T ss_pred ccCCcccccCchhhccCccccCCCcHHHHHhcCEEEecCCCCCCHHHHHHHHHHHHHHHc
Confidence 65321 14554 45699999999999998865
No 202
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.84 E-value=2.8e-21 Score=192.95 Aligned_cols=276 Identities=11% Similarity=0.009 Sum_probs=168.0
Q ss_pred CHHHHHHHHHHHhhCC--CC-CeEEEeCCHHHHHHHHHHHhHhhcCCc----EEEEEeCCCCCCchhHHHhcCCCCccCC
Q 011959 138 CLLENVLAEMVISAVP--SI-EMVRFVNSGTEACMGVLRLARAFTGRE----RIIKFEGCYHGHADPFLVKAGSGVATLG 210 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~--~~-~~v~~~~sGseA~~~al~~ar~~~~~~----~ii~~~~~yhg~~~~~~~~~g~~~~~~~ 210 (474)
.++++++++++..+-. .. ++|++|+|+++++..+++.. ..+++ .|++.+++|.++.. .+...|..+
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l--~~~Gd~~~~~Vlv~~P~y~~~~~-~~~~~g~~~---- 143 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHAL--SSLARSQPVSVVAAAPFYSTYVE-ETTYVRSGM---- 143 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHH--HHTSSSSSEEEEECSSCCTHHHH-HHHTTCBTT----
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHh--cCCCCCCcceEEEcCCCchhHHH-HHHHcCCeE----
Confidence 4566667766653211 24 58999999999999999842 23445 78888888876433 333333221
Q ss_pred CCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhC--CEEEEecc
Q 011959 211 LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG--ALLIFDEV 288 (474)
Q Consensus 211 ~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g--~llI~DEv 288 (474)
+.++. |.+.++ . +++++|+++.++|++|.+.+ + |.+ ++|+ ++||+||+
T Consensus 144 ---------------~~~~~-d~~~l~----~--~~~k~v~l~~p~NPtG~~~~--~----l~~--~~~~~~~~ii~De~ 193 (391)
T 3bwn_A 144 ---------------YKWEG-DAWGFD----K--KGPYIELVTSPNNPDGTIRE--T----VVN--RPDDDEAKVIHDFA 193 (391)
T ss_dssp ---------------EEEEE-ESTTCC----C--CSCEEEEEESSCTTTCCCCC--C----CC-------CCCEEEEECT
T ss_pred ---------------EEecC-CHHHcC----C--CCCEEEEECCCCCCCchhHH--H----HHH--HhhcCCCEEEEeCC
Confidence 12222 112222 1 25677777666788898875 2 333 2266 99999999
Q ss_pred ccCcccCCCccccccCCCCceeehhhhcC-CCcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc-
Q 011959 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK- 365 (474)
Q Consensus 289 ~~g~r~g~~~~~~~~g~~pdi~t~sK~l~-~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~- 365 (474)
|.. ....... ...+....+.+|||.++ .|+|+||+++ ++++++.+.. .....+++.+++++.++.++|+...
T Consensus 194 y~~-~~~~~l~-~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~l~~~~~ 268 (391)
T 3bwn_A 194 YYW-PHYTPIT-RRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKMVE---YIIVNSIGVSKESQVRTAKILNVLKE 268 (391)
T ss_dssp TCS-TTTSCCC-CCBCCSEEEEEHHHHHSCGGGCEEEEEECCHHHHHHHHH---HHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred CCC-CCCCccc-cCCCCeEEEEechhhcCCCccceEEEEecCHHHHHHHHH---HhcccccCCCHHHHHHHHHHHhCcch
Confidence 962 1101111 11222222348999998 7999999987 8899888762 2232346778999999999997642
Q ss_pred ---------C--CCHHHHHHHHHHHHHHHHHHHhhhcCCe---e--------EEeeeceeEEEEEecCCCcCcccccccc
Q 011959 366 ---------E--PGTYEYLNKITGELTQGIIDAGKKAGHA---I--------CGGYISGMFGFFFTEGPVYNFEDAKKSE 423 (474)
Q Consensus 366 ---------~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~---~--------~v~~~g~~~~i~~~~~~~~~~~~~~~~~ 423 (474)
+ +..+++++++.+++.+.|++. ....+. . ..+..|+++++.+...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~------------ 335 (391)
T 3bwn_A 269 TCKSESESENFFKYGREMMKNRWEKLREVVKES-DAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE------------ 335 (391)
T ss_dssp HTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTC-SSEECCCCCCEEETTTTEEECCCCSEEEEEESSS------------
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccccCCccccccccccCCCcceEEEecCCcH------------
Confidence 1 234455555555555555543 101010 0 0123455677776421
Q ss_pred hHHHHHHHHHHHHCCeEecccC-----CcceEEecCCcHHHHHHHHHHHHHHHh
Q 011959 424 TTKFARFYRGMLEEGVYFAPSQ-----FEAGFTSLAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 424 ~~~~~~~~~~l~~~Gv~v~~~~-----~~~~~~~~~~t~e~i~~~l~~l~~~~~ 472 (474)
..+.+.|.++||.+.|+. ...+|+++..+++++++++++|+++++
T Consensus 336 ----~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~~~~e~i~~~~~~L~~~~~ 385 (391)
T 3bwn_A 336 ----TDLVSELRRHKVMSRAGERCGSDKKHVRVSMLSREDVFNVFLERLANMKL 385 (391)
T ss_dssp ----CCHHHHHHHTTEECEEGGGGTCCTTEEEEESCSCHHHHHHHHHHHHSCC-
T ss_pred ----HHHHHHHHHCCEEEccCCCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 235567778999998863 346899988899999999999987764
No 203
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.84 E-value=3.7e-19 Score=179.19 Aligned_cols=190 Identities=16% Similarity=0.158 Sum_probs=130.3
Q ss_pred CCHHHHHHHHHHHHhcC-C-CC---CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCC
Q 011959 116 ADDQVLAALGETMKKGT-S-FG---APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGC 190 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~-~-~~---~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~ 190 (474)
-+|++++++.++++++. . ++ +..++..++++.+++++ +.+.+++++||++|++.+++..+ ...+++|++..++
T Consensus 14 ~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~-g~~~~i~~~~gt~al~~~~~~~~-~~~gd~Vl~~~~~ 91 (418)
T 2c81_A 14 HSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFN-GVPYCVPTTSGSTALMLALEALG-IGEGDEVIVPSLT 91 (418)
T ss_dssp CCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSS
T ss_pred CCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHcC-CCCcCEEEECCCc
Confidence 36999999999998742 1 22 22455788889998887 44578899999999999999532 3456789999999
Q ss_pred CCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHH
Q 011959 191 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270 (474)
Q Consensus 191 yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~ 270 (474)
|++....+ ...|..+..++.....+ .-|+++|++.++. ++++|++++ ++|...+ ++
T Consensus 92 ~~~~~~~~-~~~g~~~~~~~~~~~~~-------------~~d~~~l~~~i~~---~~~~v~~~~---~~G~~~~----~~ 147 (418)
T 2c81_A 92 WIATATAV-LNVNALPVFVDVEADTY-------------CIDPQLIKSAITD---KTKAIIPVH---LFGSMAN----MD 147 (418)
T ss_dssp CTHHHHHH-HHTTCEEEEECBCTTTC-------------SBCHHHHGGGCCT---TEEEECCBC---CTTCCCC----HH
T ss_pred cHhHHHHH-HHcCCEEEEEecCCCCC-------------CcCHHHHHHhhCC---CCeEEEEeC---CcCCccc----HH
Confidence 98865443 33444322211110000 0178999888763 578877653 4677666 99
Q ss_pred HHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCc--eeeh--hhhcCCCcceEEEEec-HHHHHhhc
Q 011959 271 AIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPD--LTTL--GKIIGGGLPVGAYGGR-RDIMEMVA 336 (474)
Q Consensus 271 ~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pd--i~t~--sK~l~~G~~iG~~~~~-~~i~~~~~ 336 (474)
+|.++|++||++||+||+|+.+ .... ..++..+| +.+| +|.+++| ++|+++++ +++++.+.
T Consensus 148 ~i~~~~~~~~~~li~D~a~~~~~~~~~----~~~~~~~~~~~~s~s~~K~~~~g-~~g~~~~~~~~l~~~~~ 214 (418)
T 2c81_A 148 EINEIAQEHNLFVIEDCAQSHGSVWNN----QRAGTIGDIGAFSCQQGKVLTAG-EGGIIVTKNPRLFELIQ 214 (418)
T ss_dssp HHHHHHHHTTCEEEEECTTCTTCEETT----EETTSSSSEEEEECCTTSSSCSS-SCEEEEESCHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEECcccccCccCC----EecccccceEEEeccCCcccCCC-CeEEEEECCHHHHHHHH
Confidence 9999999999999999999765 2211 11222234 4466 9999987 99999984 77766654
No 204
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.84 E-value=1.4e-18 Score=179.78 Aligned_cols=311 Identities=14% Similarity=0.073 Sum_probs=187.2
Q ss_pred HHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhh-------cCC----cEEEEEeCCCCCCchhHHHhcCCCC
Q 011959 139 LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF-------TGR----ERIIKFEGCYHGHADPFLVKAGSGV 206 (474)
Q Consensus 139 ~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~-------~~~----~~ii~~~~~yhg~~~~~~~~~g~~~ 206 (474)
+++.++.++++++++ +.+.++|++|||+|+..+++.+|.. .+. +..|+.....|.....++...|.+.
T Consensus 148 ~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~ 227 (515)
T 2jis_A 148 LMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGT 227 (515)
T ss_dssp HHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcCCCC
Confidence 557788888999886 3568999999999999999988642 121 2144455555666655555544421
Q ss_pred ccCCCCCCCCCCCCCCCceEEccCC-----CHHHHHHHHhcC---CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHH
Q 011959 207 ATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE 278 (474)
Q Consensus 207 ~~~~~~~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~ 278 (474)
. ++..+|.+ |+++|++.+++. +.++++|+++..++++|.+.| +++|.++|++
T Consensus 228 ~----------------~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~ 287 (515)
T 2jis_A 228 D----------------SVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQR 287 (515)
T ss_dssp G----------------GEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHH
T ss_pred C----------------cEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHH
Confidence 0 12222221 799999998742 225788888888888999988 9999999999
Q ss_pred hCCEEEEeccccCc-ccCCCccccccCC-CCceeeh--hhhcCCCcceEEEEecHH--HHHhhcC-CCCcc---------
Q 011959 279 NGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTTL--GKIIGGGLPVGAYGGRRD--IMEMVAP-AGPMY--------- 342 (474)
Q Consensus 279 ~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pdi~t~--sK~l~~G~~iG~~~~~~~--i~~~~~~-~~~~~--------- 342 (474)
||++||+|++|+++ .....+.....++ .+|++++ +|.+++++++|+++++++ +++.... .....
T Consensus 288 ~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~ 367 (515)
T 2jis_A 288 HGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDV 367 (515)
T ss_dssp HTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCG
T ss_pred cCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccc
Confidence 99999999999877 5433232223344 6788764 899987778999988766 6554211 00111
Q ss_pred --cccCC------CCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCc
Q 011959 343 --QAGTL------SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVY 414 (474)
Q Consensus 343 --~~~t~------~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~ 414 (474)
..+++ ....+.+.++++++....-+++.++..++.+++.+.|++. ..+.+.. ......+.+.+......
T Consensus 368 ~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~-~g~~~~~--~~~~~~v~f~~~p~~~~ 444 (515)
T 2jis_A 368 ALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKR-EGFELVM--EPEFVNVCFWFVPPSLR 444 (515)
T ss_dssp GGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-TTEEESS--CCSSSEEEEEECCGGGT
T ss_pred cCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEeC--CCCeeEEEEEEeCcccc
Confidence 01111 1123444444544432111456667777777787777653 1111111 11223333333211000
Q ss_pred Ccccccccc-hH----HHHHHHHHHHHCCeEecc-----cCCcceEEecC---CcHHHHHHHHHHHHHHHhhC
Q 011959 415 NFEDAKKSE-TT----KFARFYRGMLEEGVYFAP-----SQFEAGFTSLA---HSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 415 ~~~~~~~~~-~~----~~~~~~~~l~~~Gv~v~~-----~~~~~~~~~~~---~t~e~i~~~l~~l~~~~~~~ 474 (474)
.... ..+ .. ....+.+.|.++|+++.. .....+|+++. .|++||++++++|+++++++
T Consensus 445 ~~~~--~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~~~ 515 (515)
T 2jis_A 445 GKQE--SPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQDL 515 (515)
T ss_dssp TCTT--STTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHTTC
T ss_pred cccc--chhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 0000 000 01 122467788888975532 11235677653 79999999999999998764
No 205
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.83 E-value=1.2e-18 Score=179.74 Aligned_cols=315 Identities=13% Similarity=0.056 Sum_probs=186.8
Q ss_pred HHHHHHHHHHHhhCC-C--CCeEEEeCCHHHHHHHHHHHhHhh-------cC----CcEEEEEeCCCCCCchhHHHhcCC
Q 011959 139 LLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAF-------TG----RERIIKFEGCYHGHADPFLVKAGS 204 (474)
Q Consensus 139 ~~~~~la~~l~~~~~-~--~~~v~~~~sGseA~~~al~~ar~~-------~~----~~~ii~~~~~yhg~~~~~~~~~g~ 204 (474)
.++.++.++++++++ . .+.++|++|||+|+..+++.+|.. .+ ++.+|+.....|.....++...|.
T Consensus 132 ~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~ 211 (504)
T 2okj_A 132 LMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGF 211 (504)
T ss_dssp HHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCC
Confidence 456778888888886 3 568999999999999999988642 23 132444455556555555544443
Q ss_pred CCccCCCCCCCCCCCCCCCceEEccCC-----CHHHHHHHHhcC---CCCeEEEEEccccCCCCcccCCHHHHHHHHHHH
Q 011959 205 GVATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276 (474)
Q Consensus 205 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~ 276 (474)
+.. +++.+|.+ |+++|++.+++. +.++++|++...++++|.+.| +++|.++|
T Consensus 212 g~~----------------~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la 271 (504)
T 2okj_A 212 GTD----------------NVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADIC 271 (504)
T ss_dssp CGG----------------GEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHH
T ss_pred Ccc----------------cEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHH
Confidence 210 12223322 899999998742 224788888888888999988 99999999
Q ss_pred HHhCCEEEEeccccCc-ccCCCccccccCC-CCceeeh--hhhcCCCcceEEEEecH-HHHHhh-cCCCCcc-cccC---
Q 011959 277 KENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTTL--GKIIGGGLPVGAYGGRR-DIMEMV-APAGPMY-QAGT--- 346 (474)
Q Consensus 277 ~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pdi~t~--sK~l~~G~~iG~~~~~~-~i~~~~-~~~~~~~-~~~t--- 346 (474)
++||++|++|++|.++ .....+.....|+ .+|++++ +|.+++++++|++++++ ++++.. ....... ...+
T Consensus 272 ~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 351 (504)
T 2okj_A 272 EKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYD 351 (504)
T ss_dssp HHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSC
T ss_pred HHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCccccc
Confidence 9999999999999877 4322221222333 5688765 69998778899998876 465542 2111111 1111
Q ss_pred -------------CCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCC
Q 011959 347 -------------LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPV 413 (474)
Q Consensus 347 -------------~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~ 413 (474)
...+.+.+.++++++..-.-++..++..++.+++.+.|++. ..+.+.........++.+.+.....
T Consensus 352 ~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~-~~~~~~~~~~p~~~~v~f~~~~~~~ 430 (504)
T 2okj_A 352 VSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFNGEPEHTNVCFWYIPQSL 430 (504)
T ss_dssp GGGCCGGGSSCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-TTEEESSSSCCSSSCEEEEECCGGG
T ss_pred CcCCcccCCCCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEecCCCCeEEEEEEEeCccc
Confidence 01245666666666542111345566666677777766542 1111110001334444444422110
Q ss_pred cCcccc---cccchHHHHHHHHHHHHCCeE-eccc---CC-cceEEecC---CcHHHHHHHHHHHHHHHhhC
Q 011959 414 YNFEDA---KKSETTKFARFYRGMLEEGVY-FAPS---QF-EAGFTSLA---HSSDDIQHTITAAEKVLRQI 474 (474)
Q Consensus 414 ~~~~~~---~~~~~~~~~~~~~~l~~~Gv~-v~~~---~~-~~~~~~~~---~t~e~i~~~l~~l~~~~~~~ 474 (474)
...... ..........+.+.|.++|++ +.+. +. ..+|+++. +|++||++++++|+++++++
T Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~ 502 (504)
T 2okj_A 431 RGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502 (504)
T ss_dssp SSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 000000 000011235688888999954 4322 21 35677654 79999999999999988653
No 206
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.82 E-value=1.2e-19 Score=178.63 Aligned_cols=308 Identities=9% Similarity=-0.017 Sum_probs=184.6
Q ss_pred CCCHHHHHHHHHHHHhc----C-CCC----C--CCHHHHHHHHHHHhhCCC--CCeEEEeCCH-HHHHHHHHHHhHhhcC
Q 011959 115 HADDQVLAALGETMKKG----T-SFG----A--PCLLENVLAEMVISAVPS--IEMVRFVNSG-TEACMGVLRLARAFTG 180 (474)
Q Consensus 115 ~~~p~v~~a~~~~~~~~----~-~~~----~--~~~~~~~la~~l~~~~~~--~~~v~~~~sG-seA~~~al~~ar~~~~ 180 (474)
..+|.|++++.+.+++. . .++ + ..+...++.++++++++. .+++++++|+ ++|++.++.......+
T Consensus 13 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~ 92 (360)
T 1w23_A 13 ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGT 92 (360)
T ss_dssp CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTC
T ss_pred CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCC
Confidence 36899999999887542 0 010 1 123467888999888862 3589999988 9999999873211112
Q ss_pred CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHH-HHhcCCCCeEEEEEccccCCC
Q 011959 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALEN-LFENNKGEIAAIILEPVVGNS 259 (474)
Q Consensus 181 ~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~-~l~~~~~~~a~vi~ep~~~~~ 259 (474)
+.++|+.....|.. .......| .+..++.....+ +.|+++|++ .++ +++++|++++++|++
T Consensus 93 ~g~~vi~~~~~~~~-~~~~~~~g-~~~~v~~~~~~~-------------~~d~~~l~~~~i~---~~~k~v~~~~~~npt 154 (360)
T 1w23_A 93 IGNYVLTGSWSEKA-LKEAKLLG-ETHIAASTKANS-------------YQSIPDFSEFQLN---ENDAYLHITSNNTIY 154 (360)
T ss_dssp EEEEEECSHHHHHH-HHHHHTTS-EEEEEEECGGGT-------------SCSCCCGGGCCCC---TTEEEEEEESEETTT
T ss_pred cccEEEecchhHHH-HHHHHHhC-CeEEeecccccC-------------cCCccchHhhccC---CCCCEEEEeCCCCCc
Confidence 23344433222221 11122223 222111100000 125666766 553 368889888888899
Q ss_pred CcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhc
Q 011959 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVA 336 (474)
Q Consensus 260 G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~ 336 (474)
|.+.+ + + +++||++||+||+|..+ ..- ....+ |++ +++|.++.+ ++||+++++++++.+.
T Consensus 155 G~~~~--~-i------~~~~~~~li~D~a~~~~~~~~---~~~~~----di~~~s~sK~~~~~-G~G~~~~~~~~~~~~~ 217 (360)
T 1w23_A 155 GTQYQ--N-F------PEINHAPLIADMSSDILSRPL---KVNQF----GMIYAGAQKNLGPS-GVTVVIVKKDLLNTKV 217 (360)
T ss_dssp TEECS--S-C------CCCCSSCEEEECTTTTTSSCC---CGGGC----SEEEEETTTTTSCT-TCEEEEEEHHHHCSCC
T ss_pred ceecc--c-c------cccCCceEEEechhhcCCCCc---CcccC----CEEEEEcccccCCC-CcEEEEEcHHHHhhcc
Confidence 99875 2 2 23899999999999754 221 11111 555 678999831 3999999999887665
Q ss_pred CCCCcc--------cccCC-CCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCeeEE--e-ee
Q 011959 337 PAGPMY--------QAGTL-SGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAICG--G-YI 400 (474)
Q Consensus 337 ~~~~~~--------~~~t~-~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v--~-~~ 400 (474)
+..... ...++ +.+..++.++.++++.+.+. ...++++++.+++.+.|+++. ++.... + ..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~ 294 (360)
T 1w23_A 218 EQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESN---GFYVGHAEKGSR 294 (360)
T ss_dssp TTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTT---TSSEESSCGGGB
T ss_pred cCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcc---CcccccCCchhc
Confidence 321111 11222 34566667777788766432 345566666666666665431 121111 2 12
Q ss_pred -ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--CcceEEecC--CcHHHHHHHHHHHHHHHhh
Q 011959 401 -SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTSLA--HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 401 -g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~~~~~--~t~e~i~~~l~~l~~~~~~ 473 (474)
+.++++.+.. .....++.+.|.++||.+.++. ...+|+++. .+++++++++++|++++++
T Consensus 295 ~~~~~~~~~~~-------------~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 295 SLMNVTFNLRN-------------EELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp CSSEEEEECSS-------------HHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCcEEEEEcCC-------------CccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 3466766521 1234567888899999998763 246788765 6999999999999998865
No 207
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.82 E-value=1.1e-19 Score=184.51 Aligned_cols=287 Identities=11% Similarity=-0.013 Sum_probs=173.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g 216 (474)
+.....++.+++++ ++..+.++++||+++|+..+++.+ ..++++|++..++|++... .+...|..+..++......
T Consensus 55 ~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~--~~~gd~Vlv~~~~h~s~~~-~~~~~G~~~~~v~~~~~~~ 130 (446)
T 2x3l_A 55 PEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSF--SQKKGDILMARNVHKSVLH-ALDISQQEGHFIETHQSPL 130 (446)
T ss_dssp CSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTT--TTSSSCEEECTTCCHHHHH-HHHHHTCCEEECEEEECTT
T ss_pred cchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHh--cCCCCEEEEecCccHHHHH-HHHHcCCeEEEEeCeeccc
Confidence 34455667777777 643367899999999999999952 3456778777777766444 4444554332211100000
Q ss_pred CCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccC
Q 011959 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 295 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g 295 (474)
. .....+ |+++| +. +++++|++++ ++++|.+.+ +++|.++|++||++||+||+|++. +.+
T Consensus 131 ~-----~~~~~~---d~~~l---~~---~~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea~~~~~~f~ 191 (446)
T 2x3l_A 131 T-----NHYNKV---NLSRL---NN---DGHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEAHGAHFGLQ 191 (446)
T ss_dssp T-----SSEEEE---EC-------------CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECTTCTTTTST
T ss_pred c-----CcCCCC---CHHHH---cC---CCceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcchhhhhhccC
Confidence 0 000111 34444 22 2567777777 556899988 999999999999999999999763 222
Q ss_pred C-CccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHH--hhcCCCCcccccCCCCChHHHHHHHHHHHHhcCC--C
Q 011959 296 Y-GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIME--MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP--G 368 (474)
Q Consensus 296 ~-~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~--~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~--~ 368 (474)
. ......+ .+|++ +++|.++++.++|++++++++++ .+.. ......+.+.+...+++..++++.+++. +
T Consensus 192 ~~~~~~~~~--g~Di~~~S~~K~l~~~~g~g~l~~~~~~i~~~~~~~--~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~ 267 (446)
T 2x3l_A 192 GFPDSTLNY--QADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIE--YLSYFQTSSPSYLIMASLESAAQFYKTYDST 267 (446)
T ss_dssp TSCCCGGGG--TCSEEEECHHHHSSSCTTCEEEEEETTCTTHHHHHH--HHHHHSCSSCCHHHHHHHHHHHHHHHHCCCH
T ss_pred CCCCChHHc--CCCEEEECCccccccccccEEEEEcCCcCCHHHHHH--HHHHHcCCCchHHHHHHHHHHHHHHHHhCHH
Confidence 2 2222223 36776 46698887677999999887654 2221 1112234455666666666677766542 2
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCCc
Q 011959 369 -TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE 447 (474)
Q Consensus 369 -~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~ 447 (474)
+.++.+++.+++++. ++.......+..+++.+.. ....++.+.|.++||.+...+..
T Consensus 268 ~~~~~~~~l~~~l~~~--------g~~~~~~~~~~~l~i~~~~--------------~~~~~l~~~L~~~GI~v~~~g~~ 325 (446)
T 2x3l_A 268 LFFAKRAQLIECLENK--------GFEMLQVDDPLKLLIKYEG--------------FTGHDIQNWFMNAHIYLELADDY 325 (446)
T ss_dssp HHHHHHHHHHHHHHHH--------TCEEEECSSTTEEEEECTT--------------SCHHHHHHHHHHTTEEESEECSS
T ss_pred HHHHHHHHHHHHHHHc--------CCEECcCCCCeEEEEEeCC--------------cCHHHHHHHHHHCCCEEEecCCC
Confidence 566666666666554 2221111123344554421 01256788899999999844445
Q ss_pred ceEEecC--CcHHHHHHHHHHHHHHHhh
Q 011959 448 AGFTSLA--HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 448 ~~~~~~~--~t~e~i~~~l~~l~~~~~~ 473 (474)
.+|+++. .|++++ +++++|++++++
T Consensus 326 ~iRi~~~~~~t~e~i-~l~~aL~~~~~~ 352 (446)
T 2x3l_A 326 QALAILPLWHHDDTY-LFDSLLRKIEDM 352 (446)
T ss_dssp CEEEECCCCCTTCCC-CHHHHHHHHHTC
T ss_pred EEEEEeecCCCHHHH-HHHHHHHHHHHh
Confidence 6777654 599999 999999998764
No 208
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.81 E-value=9.7e-19 Score=178.10 Aligned_cols=296 Identities=13% Similarity=0.046 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHhhCCCCCeEEEeCCHH-HHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCC
Q 011959 139 LLENVLAEMVISAVPSIEMVRFVNSGT-EACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGV 217 (474)
Q Consensus 139 ~~~~~la~~l~~~~~~~~~v~~~~sGs-eA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~ 217 (474)
+.+.++.++++++++....++|++||+ .++..++..++...+++.||+.++ .|......+...|..+..++.....
T Consensus 133 ~~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~-~h~s~~~~~~~~G~~~~~v~~~~~~-- 209 (456)
T 2z67_A 133 ALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYA-SHKSPIKAVSFVGMNMRLVETVLDG-- 209 (456)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECC-CCHHHHHHHHHTTCEEEEECCEEET--
T ss_pred HHHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECC-CcHHHHHHHHHcCCCceEEEEeccC--
Confidence 456778899999886222399999999 567767776544334555666666 5554555555555433221110000
Q ss_pred CCCCCCceEEccCCCHHHHHHHH-hcC-CCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccC
Q 011959 218 PKGATYETLTAPFNDVSALENLF-ENN-KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLA 295 (474)
Q Consensus 218 ~~~~~~~~~~~~~~d~~~le~~l-~~~-~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g 295 (474)
+... .|+++|++.+ +.. .+++.+|++...++++|.+.| +++|.++|++||+++|+||+|.++-.|
T Consensus 210 ------~~~~---~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~~g 276 (456)
T 2z67_A 210 ------DRVY---VPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNNY 276 (456)
T ss_dssp ------TEEE---CCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHH
T ss_pred ------CCCC---cCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHHHH
Confidence 0111 2899999999 420 125666766666677899988 999999999999999999999755211
Q ss_pred C-CccccccCCCCcee--ehhhhcCCCcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CC
Q 011959 296 Y-GGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PG 368 (474)
Q Consensus 296 ~-~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~ 368 (474)
. ......+...+|++ +++|.+++++++|++++ ++++++.+.+ .+.+.. ++++ ..++.+++..+.. ++
T Consensus 277 ~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~---~~~g~~-~~~~--~~~~~aal~~l~~~~~~~ 350 (456)
T 2z67_A 277 YLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISL---SYPGRA-SATP--VVNTLVSLLSMGSKNYLE 350 (456)
T ss_dssp HHHHHHHHHTSCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHT---TSCSCB-CSHH--HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhCCCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCc---CCCCCC-CCCH--HHHHHHHHHHHHHHHHHH
Confidence 1 11111111156766 56898887889999998 5778877752 222221 2222 2233334443322 45
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCe---Eec---
Q 011959 369 TYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV---YFA--- 442 (474)
Q Consensus 369 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv---~v~--- 442 (474)
..++..++.+++.+.|+++....+... .... .++.+.+..+. . ..++.+.|.++|+ -+.
T Consensus 351 ~~~~~~~~~~~l~~~L~~~~~~~g~~v-~~~~-~~v~~~~~~~~-----------~--~~~l~~~L~~~gi~~~rv~~~~ 415 (456)
T 2z67_A 351 LVKNQKNSKKLLDELLNDLSKKTGGKF-LDVE-SPIASCISVNS-----------D--PVEIAAKLYNLRVTGPRGIKKT 415 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCB-CCCC-CSSEEEEECSS-----------C--HHHHHHHHHHTTEESCEEECTT
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCEe-cCCC-CeEEEEEeccc-----------H--HHHHHHHHHHcCCCcceEEeec
Confidence 677888888888888887632222211 1112 44455542111 0 2467888888885 232
Q ss_pred ---------ccCCcceEEec--CCcHHHHHHHHHHHHHHH
Q 011959 443 ---------PSQFEAGFTSL--AHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 443 ---------~~~~~~~~~~~--~~t~e~i~~~l~~l~~~~ 471 (474)
......+++++ ..|++++|+++++|++++
T Consensus 416 g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 416 DHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp CHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred CccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 11123456653 469999999999998765
No 209
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.81 E-value=1.8e-18 Score=174.05 Aligned_cols=282 Identities=16% Similarity=0.122 Sum_probs=179.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhH---HHhcCCCCccCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF---LVKAGSGVATLGLP 212 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~---~~~~g~~~~~~~~~ 212 (474)
+.++...+|.+++++++ +.+..++++||++|+..+++.. ...++.||+.++.|++..... +...|
T Consensus 79 ~~~p~~~~le~~lA~l~-g~~~~v~~~sG~~Ai~~al~al--~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G--------- 146 (430)
T 3ri6_A 79 SSNPTVEDLEQRLKNLT-GALGVLALGSGMAAISTAILTL--ARAGDSVVTTDRLFGHTLSLFQKTLPSFG--------- 146 (430)
T ss_dssp -CCHHHHHHHHHHHHHH-TCSEEEEESCHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHTHHHHTT---------
T ss_pred CCCHHHHHHHHHHHHHH-CCCcEEEECCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHHHHHHHcC---------
Confidence 45677889999999888 4566888899999999999842 445678888888887754322 11112
Q ss_pred CCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc
Q 011959 213 DSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292 (474)
Q Consensus 213 ~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~ 292 (474)
.++..++.+|+++|++.++. ++++|++|+++|++|.+.+ +++|.++|++||++||+||+|..
T Consensus 147 ----------~~~~~v~~~d~~~l~~ai~~---~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~livD~a~~~- 208 (430)
T 3ri6_A 147 ----------IEVRFVDVMDSLAVEHACDE---TTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLVVDTTMTP- 208 (430)
T ss_dssp ----------CEEEEECTTCHHHHHHHCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTSC-
T ss_pred ----------CEEEEeCCCCHHHHHHhhCC---CCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcc-
Confidence 24666777799999999863 6899999999999999998 99999999999999999999952
Q ss_pred ccCCCccccccCCCCceeehhhhcCC-CcceEEEEe---cHHH------------------HHhhcCCCCcccccCCCCC
Q 011959 293 RLAYGGAQEYFGVTPDLTTLGKIIGG-GLPVGAYGG---RRDI------------------MEMVAPAGPMYQAGTLSGN 350 (474)
Q Consensus 293 r~g~~~~~~~~g~~pdi~t~sK~l~~-G~~iG~~~~---~~~i------------------~~~~~~~~~~~~~~t~~~~ 350 (474)
+.......+|.+..+.+++|.+++ |..+|+++. +..+ ++.++. ..........+
T Consensus 209 --~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~--~~~~~~g~~~~ 284 (430)
T 3ri6_A 209 --PYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARK--EVFQNLGPSLS 284 (430)
T ss_dssp --TTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHH--THHHHHCCCCC
T ss_pred --cccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHH--HHHHhcCCCCC
Confidence 212222344554445579999986 555555543 2111 122210 01011122346
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEe-----------------eece-eEEEEEecCC
Q 011959 351 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG-----------------YISG-MFGFFFTEGP 412 (474)
Q Consensus 351 ~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-----------------~~g~-~~~i~~~~~~ 412 (474)
|+.+..++..++.+. ...++..++...+.+.|++ ++.+..+. +.|. |++|++.+
T Consensus 285 ~~~a~l~l~~l~~l~--~r~~~~~~na~~la~~L~~----~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~-- 356 (430)
T 3ri6_A 285 PHNAYLQSLGLETMA--LRIERSCQNAQELAHWLLS----IPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELES-- 356 (430)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT----CTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS--
T ss_pred HHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHhC----CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECC--
Confidence 777766666666542 3445556666666666643 34333332 3366 99998852
Q ss_pred CcCcccccccchHHHHHHHHHHHHCCeEecccCCc---------------------------ceEEecCCcHHHHHHHHH
Q 011959 413 VYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFE---------------------------AGFTSLAHSSDDIQHTIT 465 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~---------------------------~~~~~~~~t~e~i~~~l~ 465 (474)
.+...+|.+.+...++.+..++.. .+|++ +..|+.+.+++
T Consensus 357 -----------~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRls--vG~E~~~dl~~ 423 (430)
T 3ri6_A 357 -----------KEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLS--VGIEEIEDLKE 423 (430)
T ss_dssp -----------HHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEE--CCSSCHHHHHH
T ss_pred -----------HHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEE--eccCCHHHHHH
Confidence 233455666555444444333211 13444 34567778888
Q ss_pred HHHHHHh
Q 011959 466 AAEKVLR 472 (474)
Q Consensus 466 ~l~~~~~ 472 (474)
.|+++++
T Consensus 424 dl~~al~ 430 (430)
T 3ri6_A 424 DILQALC 430 (430)
T ss_dssp HHHHHHC
T ss_pred HHHHhhC
Confidence 8887763
No 210
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.81 E-value=1.7e-18 Score=174.25 Aligned_cols=287 Identities=14% Similarity=0.066 Sum_probs=180.9
Q ss_pred CCHHHHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHhhCCCCCeEEE---eCCHHHHHHHHHHHhHhhcCCcEEEE
Q 011959 116 ADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRF---VNSGTEACMGVLRLARAFTGRERIIK 186 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~------~~~~~~~~~~~~~la~~l~~~~~~~~~v~~---~~sGseA~~~al~~ar~~~~~~~ii~ 186 (474)
++++|++++.++... ...+.++...+.+++++++++++ .+...+ ++||++|++.+++. ....++.||+
T Consensus 36 n~~~vl~A~~~~~~~~~~~~~~~g~~y~~~~~~~l~~~la~~~g-~~~~~~~i~~~sGt~Ai~~al~a--l~~~Gd~Vl~ 112 (431)
T 3ht4_A 36 NQFRVLESFGKHKISDSHFIPTTGYGYDDIGRDTLEKVYADVFG-AEAGLVRPQIISGTHAISTALFG--ILRPGDELLY 112 (431)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCCSCHHHHHHHHHHHHHTT-CSEECCBTTSCSHHHHHHHHHHT--TCCTTCEEEE
T ss_pred HHHHHHHHHHHhchhhhhcCCCCCCCCChhhHHHHHHHHHHHhC-CCcccccceeeCHHHHHHHHHHH--hCCCCCEEEE
Confidence 467888888775321 12345677888999999999984 444433 56899999999983 2334567777
Q ss_pred EeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-----CHHHHHHHHhcCCCCeEEEEEcc-ccCCCC
Q 011959 187 FEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENNKGEIAAIILEP-VVGNSG 260 (474)
Q Consensus 187 ~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~a~vi~ep-~~~~~G 260 (474)
.++..|+.+...+..+|.. .......+.++..++++ |+++|++.++. ++++|++++ .+|++|
T Consensus 113 ~~~~~y~~~~~~~~l~g~~---------~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~---~tk~V~i~~sp~np~~ 180 (431)
T 3ht4_A 113 ITGKPYDTLEEIVGVRGKG---------VGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHS---NTKMIGIQRSKGYATR 180 (431)
T ss_dssp CSSSCCTTHHHHTTSSSCS---------SSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCT---TEEEEEEECSCTTSSS
T ss_pred eCCCCchhHHHHHhhcccc---------cchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCC---CCeEEEEECCCCCCCC
Confidence 7745555555444333220 01111222345555553 89999999863 689999995 444555
Q ss_pred cccCCHHHHHHHHHHHHH--hCCEEEEeccccCc-ccCCCccccccCCCCceeehhhhcCCC--cceEEEEecHHHHHhh
Q 011959 261 FIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG--LPVGAYGGRRDIMEMV 335 (474)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~t~sK~l~~G--~~iG~~~~~~~i~~~~ 335 (474)
.... .+.+++|+++|++ ||++||+||+|.++ ...... .+|.+..+.+++|.++|| .+.|++++++++++.+
T Consensus 181 ~~~~-~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~---~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l 256 (431)
T 3ht4_A 181 PSFT-ISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC---HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEAC 256 (431)
T ss_dssp CCCC-HHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG---GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHH
T ss_pred CcCC-HHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc---ccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHH
Confidence 5444 3449999999999 99999999999866 433221 234433344799999864 5679999999998887
Q ss_pred cCCC-CcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhc-CCeeEEeeeceeEEEEEecCCC
Q 011959 336 APAG-PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKA-GHAICGGYISGMFGFFFTEGPV 413 (474)
Q Consensus 336 ~~~~-~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~v~~~g~~~~i~~~~~~~ 413 (474)
.... ....+.+.+.++..+.+++..++.+ +...++..++.+++.+.|+++..+. +. ...++.+.++.+.+.
T Consensus 257 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~~v~p~-~~~~~~~li~~i~l~---- 329 (431)
T 3ht4_A 257 AYRLTSPGIGAEAGASLYSLQEMYQGFFLA--PHVAGQALKGAIFTAAFLEKLGMNTSPA-WNAPRTDLIQSVQFD---- 329 (431)
T ss_dssp HHHHSCTTTTTSCSCCCSCSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCEESC-TTSCCSSSCCEEECC----
T ss_pred HHHhccCCcccccCccHHHHHHHHhHhhhH--HHHHHHHHHHHHHHHHHHHhCcCEecCC-CCCCCccEEEEEEeC----
Confidence 5310 1111222233222234455555543 4567788888999999998874322 11 112344556777663
Q ss_pred cCcccccccchHHHHHHHHHHHHC
Q 011959 414 YNFEDAKKSETTKFARFYRGMLEE 437 (474)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~ 437 (474)
+.+...++++.|.+.
T Consensus 330 ---------~~~~~~~~~~~l~~~ 344 (431)
T 3ht4_A 330 ---------DKDRMIAFCQAIQYA 344 (431)
T ss_dssp ---------CHHHHHHHHHHHHHT
T ss_pred ---------CHHHHHHHHHHHHhc
Confidence 234567888888876
No 211
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.81 E-value=1.3e-18 Score=171.58 Aligned_cols=303 Identities=11% Similarity=0.005 Sum_probs=185.9
Q ss_pred CCHHHHHHHHHHHHhcC---------CCCCC--CHHHHHHHHHHHhhCCC-CC-e-EEEeCCHHHHHHHHHHHhHhhcCC
Q 011959 116 ADDQVLAALGETMKKGT---------SFGAP--CLLENVLAEMVISAVPS-IE-M-VRFVNSGTEACMGVLRLARAFTGR 181 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~---------~~~~~--~~~~~~la~~l~~~~~~-~~-~-v~~~~sGseA~~~al~~ar~~~~~ 181 (474)
.+|+|++++.+.+.+.. .+.++ .+...+++++++++++- .+ + +++++||++|+..+++.. ...+
T Consensus 15 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l--~~~g 92 (362)
T 2c0r_A 15 LPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNF--LKEG 92 (362)
T ss_dssp CCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHH--CCTT
T ss_pred CCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhc--CCCC
Confidence 68999999998875420 11111 23567899999998863 32 5 467799999999999842 3445
Q ss_pred cEEEEEeCCCCCCch-hHHHhcCCCCccCCCCC--CCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCC
Q 011959 182 ERIIKFEGCYHGHAD-PFLVKAGSGVATLGLPD--SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (474)
Q Consensus 182 ~~ii~~~~~yhg~~~-~~~~~~g~~~~~~~~~~--~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (474)
++|++.+.++++... ..+...| .+..++... ..+.. .|.++++ ++ +++++|++.+++|+
T Consensus 93 d~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~------------~~~~~~~--i~---~~t~~v~~~~~~n~ 154 (362)
T 2c0r_A 93 QTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTL------------PKLQEIQ--LQ---DNAAYLHLTSNETI 154 (362)
T ss_dssp CEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSC------------CCGGGCC--CC---TTEEEEEEESEETT
T ss_pred CeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccC------------CCHHHcc--cC---CCcCEEEEeCCcCc
Confidence 778887776655321 2223334 332221110 01100 0333332 32 36888888877888
Q ss_pred CCcc-cCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCcee--ehhhhcC-CCcceEEEEecHHHHHh
Q 011959 259 SGFI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLT--TLGKIIG-GGLPVGAYGGRRDIMEM 334 (474)
Q Consensus 259 ~G~i-~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~--t~sK~l~-~G~~iG~~~~~~~i~~~ 334 (474)
+|.+ .+ +++| ||+++|+||+|.-+.. ..... .. |++ +++|.+| .| +||+++++++++.
T Consensus 155 tG~~~~~----l~~i------~~~~vivD~a~~~~~~--~~~~~--~~--d~~~~s~~K~~g~~G--~G~l~~~~~~~~~ 216 (362)
T 2c0r_A 155 EGAQFKA----FPDT------GSVPLIGDMSSDILSR--PFDLN--QF--GLVYAGAQKNLGPSG--VTVVIVREDLVAE 216 (362)
T ss_dssp TTEECSS----CCCC------TTSCEEEECTTTTTSS--CCCGG--GC--SEEEEETTTTTCCSS--CEEEEEEGGGSSS
T ss_pred cceeccc----cccc------CCCEEEEEChhhccCC--ccchh--HC--cEEEEeccccccCcC--cEEEEEcHHHHhh
Confidence 9985 44 4444 8999999999963211 11111 12 554 7899998 35 8999999998776
Q ss_pred hcCCCCccc---------ccCCCCChHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHHHhhhcC-C-eeEE--
Q 011959 335 VAPAGPMYQ---------AGTLSGNPLAMTAGIHTLKRLKE----PGTYEYLNKITGELTQGIIDAGKKAG-H-AICG-- 397 (474)
Q Consensus 335 ~~~~~~~~~---------~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L~~~~~~~~-~-~~~v-- 397 (474)
+.+..+.+. ...++.|+.++.++.++|+.+.+ +...++++++++++++.|+++ + + ....
T Consensus 217 l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~ 292 (362)
T 2c0r_A 217 SPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQS----GGFYRGCVDV 292 (362)
T ss_dssp CCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTS----TTSSEESSCG
T ss_pred ccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc----CCccccCCCh
Confidence 653111111 22346678888888899987654 344555666666666666543 3 2 1100
Q ss_pred -eeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--CcceEEecC--CcHHHHHHHHHHHHHHHh
Q 011959 398 -GYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTSLA--HSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 398 -~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~~~~~--~t~e~i~~~l~~l~~~~~ 472 (474)
...+.++++.+. +.....++.+.|.++||.+.++. ...+|+++. +++++++++++.|+++++
T Consensus 293 ~~~~~~~~~~~~~-------------~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~~ 359 (362)
T 2c0r_A 293 DSRSDMNITFRLA-------------SEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFMEHFKR 359 (362)
T ss_dssp GGBCSSEEEEECS-------------CHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCcEEEEEcC-------------CcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 112334444432 12234678888999999887653 235788764 489999999999999876
Q ss_pred h
Q 011959 473 Q 473 (474)
Q Consensus 473 ~ 473 (474)
+
T Consensus 360 ~ 360 (362)
T 2c0r_A 360 S 360 (362)
T ss_dssp H
T ss_pred h
Confidence 4
No 212
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.80 E-value=1.3e-17 Score=169.69 Aligned_cols=321 Identities=12% Similarity=0.012 Sum_probs=191.3
Q ss_pred CCHHHHHHHHHHHHhcC-CCC-C--CCHHHHHHHHHHHhhCC-CCC-----eEEEeCCHHHHHHHHHHHhHhh-------
Q 011959 116 ADDQVLAALGETMKKGT-SFG-A--PCLLENVLAEMVISAVP-SIE-----MVRFVNSGTEACMGVLRLARAF------- 178 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~-~~~-~--~~~~~~~la~~l~~~~~-~~~-----~v~~~~sGseA~~~al~~ar~~------- 178 (474)
.+|.+.+++.+.+.... .+. + ..+++.++.++++++++ ..+ .+++++||++|+..+++.++..
T Consensus 54 ~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~ 133 (452)
T 2dgk_A 54 DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEA 133 (452)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999888776421 121 1 23567888999999886 333 4899999999999999876431
Q ss_pred cC----CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcc
Q 011959 179 TG----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254 (474)
Q Consensus 179 ~~----~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep 254 (474)
.| +++||+.+ .|.....++...|..+..++.....+. -|+++|++.+++ ++++|++..
T Consensus 134 ~G~~~~~~~vi~~~--~h~~~~~~~~~~G~~v~~v~~~~~~~~-------------~d~~~l~~~i~~---~t~~v~~~~ 195 (452)
T 2dgk_A 134 AGKPTDKPNLVCGP--VQICWHKFARYWDVELREIPMRPGQLF-------------MDPKRMIEACDE---NTIGVVPTF 195 (452)
T ss_dssp TTCCCSCCEEEESS--CCHHHHHHHHHTTCEEEECCCBTTBCS-------------CCHHHHHHHCCT---TEEEEECBB
T ss_pred cCCCCCCcEEEECC--CcHHHHHHHHHcCceEEEEecCCCCCe-------------ECHHHHHHHHhh---CCEEEEEEc
Confidence 23 34666655 666555555555554333222110010 189999999874 578888887
Q ss_pred ccCCCCcccCCHHHHHHHHHHHHHh------CCEEEEeccccCc-c--cCCCccccccCC-CCceee--hhhhcCCCcce
Q 011959 255 VVGNSGFIAPKPDFLNAIRRITKEN------GALLIFDEVMTGF-R--LAYGGAQEYFGV-TPDLTT--LGKIIGGGLPV 322 (474)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~------g~llI~DEv~~g~-r--~g~~~~~~~~g~-~pdi~t--~sK~l~~G~~i 322 (474)
.++++|.+.+ +++|.++|++| |++|++|++|.++ . ........ +.. ..|+++ ..|.+.+|+++
T Consensus 196 ~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~hK~~~~~~~~ 270 (452)
T 2dgk_A 196 GVTYTGNYEF----PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWD-FRLPRVKSISASGHKFGLAPLGC 270 (452)
T ss_dssp SCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS-TTSTTEEEEEEETTTTTCCCSSC
T ss_pred CCcCCcccCC----HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhh-cCCCCCcEEEECcccccCCCCCe
Confidence 7788999988 99999999996 9999999999875 3 11111111 111 246554 56966678999
Q ss_pred EEEEecHH-HH-HhhcCCCCccccc---C--C--CCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 323 GAYGGRRD-IM-EMVAPAGPMYQAG---T--L--SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 323 G~~~~~~~-i~-~~~~~~~~~~~~~---t--~--~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
|+++++++ ++ +.+... +.+..+ + . +.+.....+..++++.+.. ++..++..++.+++.+.|+++
T Consensus 271 G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~--- 346 (452)
T 2dgk_A 271 GWVIWRDEEALPQELVFN-VDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKL--- 346 (452)
T ss_dssp EEEEESSGGGSCGGGCEE-ECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred EEEEEcCHHHHHHHhccC-ccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 99988643 33 443210 111110 0 1 1111122233334443322 344556666666666666543
Q ss_pred cC-CeeEEe----eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecc----cC---CcceEEec--CCc
Q 011959 391 AG-HAICGG----YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAP----SQ---FEAGFTSL--AHS 456 (474)
Q Consensus 391 ~~-~~~~v~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~----~~---~~~~~~~~--~~t 456 (474)
+ +....+ ....++.+.+...... .....++.+.|.++|+.+.. .. ...+|+++ ..|
T Consensus 347 -~~~~~~~~~~~~~~~~~v~f~~~~~~~~---------~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t 416 (452)
T 2dgk_A 347 -GPYEFICTGRPDEGIPAVCFKLKDGEDP---------GYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFE 416 (452)
T ss_dssp -SSEEEEEECCTTTBSSEEEEEECTTCCC---------SCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCC
T ss_pred -CCeEEecCCCCCCCeEEEEEEecCcccc---------cCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCC
Confidence 3 222112 2445566655321100 00125688899999996542 21 22466653 458
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011959 457 SDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 457 ~e~i~~~l~~l~~~~~~ 473 (474)
+++++++++.|++++++
T Consensus 417 ~e~id~li~~l~~~~~~ 433 (452)
T 2dgk_A 417 MDFAELLLEDYKASLKY 433 (452)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988754
No 213
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.80 E-value=2.7e-18 Score=175.97 Aligned_cols=312 Identities=18% Similarity=0.135 Sum_probs=185.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-------C----CHHHHHHHHHHHhhCC-CCC---eEEEeCCHHHHHHHHHHHhHhhcC
Q 011959 116 ADDQVLAALGETMKKGTSFGA-------P----CLLENVLAEMVISAVP-SIE---MVRFVNSGTEACMGVLRLARAFTG 180 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~-------~----~~~~~~la~~l~~~~~-~~~---~v~~~~sGseA~~~al~~ar~~~~ 180 (474)
.+|.|++|+.+.+.+....++ . .+++..+.++++++++ ..+ ..++.+||++|+..+++. ...+
T Consensus 56 ~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~a--ll~p 133 (483)
T 1rv3_A 56 ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTA--LVEP 133 (483)
T ss_dssp CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH--HTCT
T ss_pred CCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHH--hcCC
Confidence 589999999988865321011 1 2445667788999886 332 225556677999888874 2455
Q ss_pred CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCC--CceEEcc------CCCHHHHHHHHhcCCCCeEEEEE
Q 011959 181 RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGAT--YETLTAP------FNDVSALENLFENNKGEIAAIIL 252 (474)
Q Consensus 181 ~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~--~~~~~~~------~~d~~~le~~l~~~~~~~a~vi~ 252 (474)
+++|++.+..|.++.......... ++ ...+ ...+.++ .-|+++|++.+++. ++++|++
T Consensus 134 GD~Vl~~~~~~~~~~~~~~~~~~~-----------~v-~~~G~~~~~v~~~~~~~~~~iD~d~le~~i~~~--~tklIi~ 199 (483)
T 1rv3_A 134 HGRIMGLDLPDGGHLTHGFMTDKK-----------KI-SATSIFFESMAYKVNPDTGYIDYDRLEENARLF--HPKLIIA 199 (483)
T ss_dssp TCEEEEECGGGTCCGGGCCBCSSC-----------BC-SHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH--CCSEEEE
T ss_pred CCEEEEecCccCcCcchhhhhccc-----------Cc-ccccceEEEEECccccCCCcCCHHHHHHHHhhc--CCcEEEE
Confidence 678888887776643211000000 00 0000 0122221 12899999999742 4677888
Q ss_pred ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-Cc-ccCCC-ccccccCCCCcee--ehhhhcCCCcceEEEEe
Q 011959 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT-GF-RLAYG-GAQEYFGVTPDLT--TLGKIIGGGLPVGAYGG 327 (474)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~-r~g~~-~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~ 327 (474)
...+++ .+.+ +++|+++|++||++||+||+|. |+ ..+.. .... ..|++ +++|+|+ |+|.|++++
T Consensus 200 -~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~----~~div~~s~~K~l~-GprgG~i~~ 268 (483)
T 1rv3_A 200 -GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE----HCHVVTTTTHKTLR-GCRAGMIFY 268 (483)
T ss_dssp -CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG----TCSEEEEESSGGGC-CCSCEEEEE
T ss_pred -eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC----CCcEEEecCcccCC-CCCceEEEE
Confidence 555555 6677 9999999999999999999984 55 33321 1111 24665 5779995 678899988
Q ss_pred cHH---------------HHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhh
Q 011959 328 RRD---------------IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGK 389 (474)
Q Consensus 328 ~~~---------------i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~ 389 (474)
+++ +.+.+.. ..+.+...+.+...+++..++++.+.+ +++.+++.++.+++.+.|.+.
T Consensus 269 ~~~~~~~~~~~g~~~~y~~~~~~~~--~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-- 344 (483)
T 1rv3_A 269 RRGVRSVDPKTGKEILYNLESLINS--AVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVEL-- 344 (483)
T ss_dssp ECSBCC-------CCBCCHHHHHHH--HHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred cchhhhhccccCcchhhHHHHHhhh--hcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhc--
Confidence 874 3333321 001111122344455555667776653 456677777788888877764
Q ss_pred hcCCeeEEeee-ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEec----ccC-----CcceEEecCC--c-
Q 011959 390 KAGHAICGGYI-SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA----PSQ-----FEAGFTSLAH--S- 456 (474)
Q Consensus 390 ~~~~~~~v~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----~~~-----~~~~~~~~~~--t- 456 (474)
++.....+. ..++++.+.... .....+.+.|.+.||.+. |+. ...+|+++.. |
T Consensus 345 --g~~~~~~~~~~~~~~v~~~~~g------------~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~iRis~~~~~t~ 410 (483)
T 1rv3_A 345 --GYKIVTGGSDNHLILVDLRSKG------------TDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSR 410 (483)
T ss_dssp --TCEEGGGSCSSSEEEEEGGGGT------------CCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEEEEECHHHHHT
T ss_pred --CCEeccCCCCCceEEEeccCCC------------CCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceEEeecCCcccC
Confidence 322111111 134455543210 012456777888999998 642 2356776432 5
Q ss_pred ---HHHHHHHHHHHHHHHh
Q 011959 457 ---SDDIQHTITAAEKVLR 472 (474)
Q Consensus 457 ---~e~i~~~l~~l~~~~~ 472 (474)
++|+++++++|+++++
T Consensus 411 g~~~edi~~~~~~l~~~l~ 429 (483)
T 1rv3_A 411 GLLEKDFQKVAHFIHRGIE 429 (483)
T ss_dssp TCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 8999999999998875
No 214
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.80 E-value=5.7e-19 Score=178.17 Aligned_cols=320 Identities=10% Similarity=-0.043 Sum_probs=194.6
Q ss_pred cCCCEEEeccCChhhccCCCCCHHHHHHHHHHHH-hcC-C--CC----C---CCHHHHHHHHHHHhhCC---CCCeEEEe
Q 011959 96 IDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK-KGT-S--FG----A---PCLLENVLAEMVISAVP---SIEMVRFV 161 (474)
Q Consensus 96 ~dG~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~-~--~~----~---~~~~~~~la~~l~~~~~---~~~~v~~~ 161 (474)
...+..|||..+.. .++ .++.+.+++.+.+. .+. . |. + ..+++.++++++.+... ..++|+++
T Consensus 53 ~~~~~~i~l~~g~~--~~~-~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t 129 (427)
T 2hox_A 53 KIQGCSADVASGDG--LFL-EEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFG 129 (427)
T ss_dssp ECTTCCEECCSCCC--GGG-HHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEE
T ss_pred cCCCceEEecCcCC--CCC-CCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEe
Confidence 34556788877732 222 35677778777663 222 1 22 1 34567777777765432 46899999
Q ss_pred CCHHHHHHHHHHHhHh------hcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHH
Q 011959 162 NSGTEACMGVLRLARA------FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSA 235 (474)
Q Consensus 162 ~sGseA~~~al~~ar~------~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~ 235 (474)
+|+++|+..+++.... ...++.|++.+++|.++.. .+...|..+ +.+.. |+++
T Consensus 130 ~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~-~~~~~g~~~-------------------~~~~~-d~~~ 188 (427)
T 2hox_A 130 VGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFRE-QTKYFDKKG-------------------YVWAG-NAAN 188 (427)
T ss_dssp SHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHH-HHHHSCBTT-------------------EEEEE-EGGG
T ss_pred CCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHH-HHHHcCCee-------------------eeecC-CHHH
Confidence 9999999999984200 2345678888888865433 333333311 11111 5677
Q ss_pred HHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhh
Q 011959 236 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKI 315 (474)
Q Consensus 236 le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~ 315 (474)
|++.++. ++++|++..++|++|.+.+ + .+ + ++..|.||.+.+ ......... .+...-+.+|||.
T Consensus 189 l~~~~~~---~~k~v~l~~p~NPtG~~~~-~-~l-------~--~~~~i~d~~~~~-~~~s~~~~~-~~~~i~~~S~SK~ 252 (427)
T 2hox_A 189 YVNVSNP---EQYIEMVTSPNNPEGLLRH-A-VI-------K--GCKSIYDMVYYW-PHYTPIKYK-ADEDILLFTMSKF 252 (427)
T ss_dssp GTTCSCG---GGEEEEEESSCTTTCCCCC-C-SS-------T--TCEEEEECTTCS-TTTSCCCSC-BCCSEEEEEHHHH
T ss_pred HHHhhcC---CceEEEEcCCCCCcccccH-H-HH-------c--CCCEEEeecccC-CCCCccccC-CCceEEEEeChhc
Confidence 7766642 4667777666788898887 3 12 2 566777877632 000011111 1211123389999
Q ss_pred cC-CCcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhc---------CCCH----HHHHHHHHHHH
Q 011959 316 IG-GGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK---------EPGT----YEYLNKITGEL 380 (474)
Q Consensus 316 l~-~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~---------~~~~----~~~~~~~~~~l 380 (474)
++ .|+|+||+++ ++++++.+.. .....+++.+++++.++.++|+... -+++ +++++++.+++
T Consensus 253 ~g~~G~RiG~~~~~~~~l~~~l~~---~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 329 (427)
T 2hox_A 253 TGHSGSRFGWALIKDESVYNNLLN---YMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNI 329 (427)
T ss_dssp TSCGGGCCEEEEECCHHHHHHHHH---HHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEEECCHHHHHHHHH---HHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence 98 7999999999 5899888863 3333456788999998888887532 1333 34455555555
Q ss_pred HHHHHHH-hhhc---C-------CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHH-HCCeEecccC---
Q 011959 381 TQGIIDA-GKKA---G-------HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML-EEGVYFAPSQ--- 445 (474)
Q Consensus 381 ~~~L~~~-~~~~---~-------~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~--- 445 (474)
.+.|++. .... + +....+..|+++++.+..+ ..++++.|+ ++||.+.|+.
T Consensus 330 ~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~---------------~~~~~~~ll~~~gI~v~pg~~f~ 394 (427)
T 2hox_A 330 TALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE---------------EDKDCYQTFQNGRINTQNGVGFE 394 (427)
T ss_dssp HHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG---------------GGCSHHHHHHHTTEECEEGGGGT
T ss_pred HHHHHhCcCccccccccccccccccccCCCCceEEEEECCCc---------------HHHHHHHHHHHCCEEEcCCCccC
Confidence 5555432 1010 0 0112333477778777421 024556665 7899998863
Q ss_pred --CcceEEecCCcHHHHHHHHHHHHHHHhh
Q 011959 446 --FEAGFTSLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 446 --~~~~~~~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
...+|+++..+++++++++++|.+++++
T Consensus 395 ~~~~~~Ris~~~~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 395 ASSRYVRLSLIKTQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp SCTTEEEEECSSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 3468999888999999999999998753
No 215
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.79 E-value=1.3e-17 Score=169.75 Aligned_cols=311 Identities=15% Similarity=0.076 Sum_probs=176.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-----------CCHHHHHHHHHHHhhCCC-CC---eEEEeCCHHHHHHHHHHHhHhhc-
Q 011959 116 ADDQVLAALGETMKKGTSFGA-----------PCLLENVLAEMVISAVPS-IE---MVRFVNSGTEACMGVLRLARAFT- 179 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~-----------~~~~~~~la~~l~~~~~~-~~---~v~~~~sGseA~~~al~~ar~~~- 179 (474)
.+|+|++|+...+.+....|+ ...++....++++++++. .+ ..++++||++||..+++ ++.
T Consensus 66 ~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~---al~~ 142 (490)
T 2a7v_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYT---ALLQ 142 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHH---HHCC
T ss_pred CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHH---HHcC
Confidence 489999999988754211111 134454555888888852 22 24566799999999998 444
Q ss_pred CCcEEEEEeCCCCCCch-h------HHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEE
Q 011959 180 GRERIIKFEGCYHGHAD-P------FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIIL 252 (474)
Q Consensus 180 ~~~~ii~~~~~yhg~~~-~------~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ 252 (474)
.+++||+.+..|.|+.. + .+...|.......++..+. . -..|+++|++.++.+ ++++|++
T Consensus 143 pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~--------~---~~iD~d~le~~l~~~--~~klIi~ 209 (490)
T 2a7v_A 143 PHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK--------T---GLIDYNQLALTARLF--RPRLIIA 209 (490)
T ss_dssp SCEECCC-------------------------------CCBCTT--------T---CSBCHHHHHHHHHHH--CCSEEEE
T ss_pred CCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccc--------c---CCcCHHHHHHHHhhc--CCcEEEE
Confidence 45667766665543221 1 1112222111111110000 0 022899999998743 3456666
Q ss_pred ccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCC-ccccccCCCCcee--ehhhhcCCCcceEEEEe
Q 011959 253 EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYG-GAQEYFGVTPDLT--TLGKIIGGGLPVGAYGG 327 (474)
Q Consensus 253 ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~-~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~ 327 (474)
+...+ |...+ +++|+++|++||++|++|++| .|+ ..|.. ...+ ..|++ |++|+|+ |++.|++++
T Consensus 210 ~~s~~--~~~~d----l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~----~aDiv~~S~hK~l~-Gp~GG~i~~ 278 (490)
T 2a7v_A 210 GTSAY--ARLID----YARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK----HADIVTTTTHKTLR-GARSGLIFY 278 (490)
T ss_dssp CCSSC--CSCCC----HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG----TCSEEEEESSGGGC-SCSCEEEEE
T ss_pred cCCCC--CCccc----HHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC----CCCEEEECCcccCc-cccchheee
Confidence 54322 33455 999999999999999999998 465 43321 1111 24665 6899995 567899888
Q ss_pred cHH---------------HHHhhcCCCCcccccCCC-CChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHh
Q 011959 328 RRD---------------IMEMVAPAGPMYQAGTLS-GNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAG 388 (474)
Q Consensus 328 ~~~---------------i~~~~~~~~~~~~~~t~~-~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~ 388 (474)
+++ +.+.++. ..+. ++.+ .++..+++..++++.+.. +++.+++.++.++|.+.|.+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~i~~--~~~~-g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~- 354 (490)
T 2a7v_A 279 RKGVKAVDPKTGREIPYTFEDRINF--AVFP-SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLER- 354 (490)
T ss_dssp ECSEEEEETTTEEEEECCCHHHHHH--HHTT-TTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred ccchhcccccccchhhHHHHHHHHH--Hhcc-cCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHc-
Confidence 764 3344431 1111 1222 344445555556665543 456778888899999998874
Q ss_pred hhcCCeeEEee-eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc---------CCcceEEe------
Q 011959 389 KKAGHAICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS---------QFEAGFTS------ 452 (474)
Q Consensus 389 ~~~~~~~~v~~-~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~---------~~~~~~~~------ 452 (474)
++.....+ ...++++.+.... .....+.+.|.+.||.+... ....+|+.
T Consensus 355 ---G~~v~~~~t~t~lv~vdl~~~g------------~~~~~~~~~L~~~GI~v~~~~~p~d~~p~~~~~iRig~~a~t~ 419 (490)
T 2a7v_A 355 ---GYSLVSGGTDNHLVLVDLRPKG------------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTS 419 (490)
T ss_dssp ---TCEEGGGSCSSSEEEEECTTTT------------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHH
T ss_pred ---CcEEecCCCCCeEEEEEeCCCC------------CCHHHHHHHHHhCCeEEecCccCCCCCCCCCCceEeccccccc
Confidence 22111111 2245555553211 01245777888899998742 12345662
Q ss_pred cCCcHHHHHHHHHHHHHHHh
Q 011959 453 LAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 453 ~~~t~e~i~~~l~~l~~~~~ 472 (474)
..++++|++++++.|.++++
T Consensus 420 ~g~~~~d~~~~~~~i~~~l~ 439 (490)
T 2a7v_A 420 RQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp TTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 35789999999999998875
No 216
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.79 E-value=1.3e-17 Score=167.17 Aligned_cols=216 Identities=11% Similarity=0.015 Sum_probs=147.3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 136 APCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 136 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
+.++...++.++++++.+ .+.+++++||++|+..+++. ....+++||+.++.|++..........
T Consensus 79 ~~~p~~~~le~~lA~l~g-~~~~i~~ssGt~Ai~~al~~--l~~~Gd~Vi~~~~~y~~~~~~~~~~l~------------ 143 (415)
T 2fq6_A 79 RGTLTHFSLQQAMCELEG-GAGCVLFPCGAAAVANSILA--FIEQGDHVLMTNTAYEPSQDFCSKILS------------ 143 (415)
T ss_dssp TCCHHHHHHHHHHHHHHT-CSEEEEESSHHHHHHHHHHT--TCCTTCEEEEETTSCHHHHHHHHHTGG------------
T ss_pred CCCchHHHHHHHHHHHhC-CCeEEEeCCHHHHHHHHHHH--HhCCCCEEEEeCCCchHHHHHHHHHHH------------
Confidence 356777888888888874 46788889999999999983 123467888888888774322211000
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCcc
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGFR 293 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~r 293 (474)
..+.++..++.+|+++|+++++. ++++|++|.++|++|.+.+ +++|.++|++ ||++||+||+|....
T Consensus 144 ----~~G~~v~~v~~~d~~~le~ai~~---~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~~livD~a~a~~~ 212 (415)
T 2fq6_A 144 ----KLGVTTSWFDPLIGADIVKHLQP---NTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWAAGV 212 (415)
T ss_dssp ----GGTCEEEEECTTCGGGGGGGCCT---TEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTTTTT
T ss_pred ----HcCcEEEEECCCCHHHHHHhhcc---CCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCCEEEEECCCcccc
Confidence 01123555667789999988863 6899999999999999998 9999999999 999999999995221
Q ss_pred cCCCccccccCCCCcee--ehhhhcCC-Cc-ceEEEEecHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcCCCH
Q 011959 294 LAYGGAQEYFGVTPDLT--TLGKIIGG-GL-PVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGT 369 (474)
Q Consensus 294 ~g~~~~~~~~g~~pdi~--t~sK~l~~-G~-~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~ 369 (474)
.... +....|++ +++|.+++ |. .+|++++++++++.+.... ...++ ..++..+..++..++.+ +..
T Consensus 213 ~~~p-----~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~--~~~G~-~~~~~~a~~~~~~l~~l--~~r 282 (415)
T 2fq6_A 213 LFKA-----LDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENA--YLMGQ-MVDADTAYITSRGLRTL--GVR 282 (415)
T ss_dssp SSCG-----GGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHH--HHTTC-CCCHHHHHHHHHHHHHH--HHH
T ss_pred cCCc-----cccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHH--HhcCC-CCCHHHHHHHHhhhhHH--HHH
Confidence 1111 12235666 78999995 44 4799999888877765211 11122 34666666666666644 234
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011959 370 YEYLNKITGELTQGIIDA 387 (474)
Q Consensus 370 ~~~~~~~~~~l~~~L~~~ 387 (474)
.++..++...+.+.|++.
T Consensus 283 ~~~~~~n~~~l~~~L~~~ 300 (415)
T 2fq6_A 283 LRQHHESSLKVAEWLAEH 300 (415)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 455566667777766653
No 217
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.77 E-value=4.9e-17 Score=161.24 Aligned_cols=313 Identities=12% Similarity=0.072 Sum_probs=189.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-HhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCC
Q 011959 116 ADDQVLAALGETMKKGTSFGAPCLLENVLAEMV-ISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 194 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l-~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~ 194 (474)
.+|++++++.+.++.+. ++.......+|.+.+ +++++..+.+++++||++|+..+++.. ....++.||+..+.|.+.
T Consensus 14 ~~~~i~~a~~~~~~~~~-~~~~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l-~~~~Gd~Vi~~~~~~~~~ 91 (377)
T 3ju7_A 14 PVIEYLDELKEIDASHI-YTNYGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLK-KRKKGKYALMPSFTFPAT 91 (377)
T ss_dssp CGGGGHHHHHHHHHHTC-CSSSCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHH-SCTTCCEEEEESSSCTHH
T ss_pred CcHHHHHHHHHHHHcCC-cccCCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHc-CCCCcCEEEECCCCcHHH
Confidence 46789999999998764 322245667888888 888842678999999999999999842 134567888888888764
Q ss_pred chhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHH
Q 011959 195 ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRR 274 (474)
Q Consensus 195 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~ 274 (474)
...+...|..+..++.....+ .-|++++++.+.....++++|+. .+++|...+ +++|.+
T Consensus 92 -~~~~~~~G~~~~~v~~~~~~~-------------~~d~~~l~~~i~~~~~~tk~v~~---~~~~G~~~~----~~~i~~ 150 (377)
T 3ju7_A 92 -PLAAIWCGLEPYFIDISIDDW-------------YMDKTVLWDKIEELKEEVAIVVP---YATFGSWMN----LEEYEE 150 (377)
T ss_dssp -HHHHHHTTCEEEEECBCTTTC-------------SBCHHHHHHHHHHHGGGEEEECC---BCGGGBCCC----CHHHHH
T ss_pred -HHHHHHcCCEEEEEecCCccC-------------CcCHHHHHHHHhcCCCCceEEEE---ECCCCCccC----HHHHHH
Confidence 334444444322211110000 01899999988321112777763 234677777 888999
Q ss_pred HHHHhCCEEEEecccc-CcccCCCcccccc-CCCCceeeh----hhhcCCCcceEEEEe-cHHHHHhhcCCCC-------
Q 011959 275 ITKENGALLIFDEVMT-GFRLAYGGAQEYF-GVTPDLTTL----GKIIGGGLPVGAYGG-RRDIMEMVAPAGP------- 340 (474)
Q Consensus 275 l~~~~g~llI~DEv~~-g~r~g~~~~~~~~-g~~pdi~t~----sK~l~~G~~iG~~~~-~~~i~~~~~~~~~------- 340 (474)
+|+ ||++||+|++|+ |... ..... +...|+.++ +|.+++| ..|+++. ++++.+.++....
T Consensus 151 la~-~~~~vi~D~a~a~g~~~----~~~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l~~~~~~~~~~g~~~~~ 224 (377)
T 3ju7_A 151 LEK-KGVPVVVDAAPGFGLMN----GGMHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEEDIQRIKRMGNFGFDTNR 224 (377)
T ss_dssp HHH-TTCCBEEECTTCTTCEE----TTEETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHHHHHHHHHTBTTBCTTS
T ss_pred HHh-cCCEEEEECCCccCCeE----CCEeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHHHHHHHHHHhcCCCCCC
Confidence 999 999999999995 2211 11122 122355543 4999875 5677755 5666665542111
Q ss_pred --cccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhh-cCCeeEE--eeeceeEEEEEecCCCcC
Q 011959 341 --MYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK-AGHAICG--GYISGMFGFFFTEGPVYN 415 (474)
Q Consensus 341 --~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~v--~~~g~~~~i~~~~~~~~~ 415 (474)
...+..+..+++.++.+++.++.+ +...++.+++.+++.+.|.++..- ....... ...-.++.+.+.+
T Consensus 225 ~~~~~g~~~~~~~~~aa~~~~~l~~l--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 297 (377)
T 3ju7_A 225 ECTMMGFNCKMSEYAAAIGIATMKKW--DDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPE----- 297 (377)
T ss_dssp CBCSSCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCT-----
T ss_pred ceeeccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCC-----
Confidence 011224556778777777777644 456677777888888888765210 1111000 0011122222211
Q ss_pred cccccccchHHHHHHHHHHHHCCeEecccCCc-------------------------ceEEe--cCCcHHHHHHHHHHHH
Q 011959 416 FEDAKKSETTKFARFYRGMLEEGVYFAPSQFE-------------------------AGFTS--LAHSSDDIQHTITAAE 468 (474)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~-------------------------~~~~~--~~~t~e~i~~~l~~l~ 468 (474)
....+.+.+.|.++||.+...... .++++ ...|++|++++++.|+
T Consensus 298 --------~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~ 369 (377)
T 3ju7_A 298 --------EVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLG 369 (377)
T ss_dssp --------TSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHT
T ss_pred --------hhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHH
Confidence 111367889999999987654210 12444 3569999999999998
Q ss_pred HHHh
Q 011959 469 KVLR 472 (474)
Q Consensus 469 ~~~~ 472 (474)
+++.
T Consensus 370 ~~~~ 373 (377)
T 3ju7_A 370 QKVV 373 (377)
T ss_dssp C---
T ss_pred HHHh
Confidence 8764
No 218
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.2e-16 Score=163.77 Aligned_cols=302 Identities=11% Similarity=-0.002 Sum_probs=181.0
Q ss_pred CHHHHHHHHHHHhhCCCC-----------CeEEEeCCHHHHHHHHHHHhHhhc----------------CCcEEEEEeCC
Q 011959 138 CLLENVLAEMVISAVPSI-----------EMVRFVNSGTEACMGVLRLARAFT----------------GRERIIKFEGC 190 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~~-----------~~v~~~~sGseA~~~al~~ar~~~----------------~~~~ii~~~~~ 190 (474)
.+++.++.+++++.++-. ...+|++|||+||..|+..+|... .++.+|+....
T Consensus 117 ~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~ 196 (481)
T 4e1o_A 117 TELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQ 196 (481)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETT
T ss_pred HHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCc
Confidence 467788888888887421 267999999999999999886531 12446666666
Q ss_pred CCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC---CCCeEEEEEccccCCCCcccCCHH
Q 011959 191 YHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPD 267 (474)
Q Consensus 191 yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~ 267 (474)
.|.+...+....|..+..++... .+. -|+++|++.|++. +..+.+|++....+++|.+.|
T Consensus 197 ~H~s~~~~~~~~g~~~~~v~~~~-~~~-------------~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~--- 259 (481)
T 4e1o_A 197 AHSSVEKAGLISLVKMKFLPVDD-NFS-------------LRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC--- 259 (481)
T ss_dssp SCHHHHHHHHHHTCEEEEECCCT-TSC-------------CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC---
T ss_pred chHHHHHHHHhCCCceEEEEcCC-CCc-------------CCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC---
Confidence 67666555555555433322211 110 1899999999742 112566677767777899888
Q ss_pred HHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCC-CCceee--hhhhcCCCcceEEEEecH-HHHH-hhcCCCCc
Q 011959 268 FLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRR-DIME-MVAPAGPM 341 (474)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pdi~t--~sK~l~~G~~iG~~~~~~-~i~~-~~~~~~~~ 341 (474)
+++|.++|++||++|++|++|.+. .....+.....|+ ..|.++ ..|.+++...+|+++.++ +.+. .+.. ...
T Consensus 260 -l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~-~~~ 337 (481)
T 4e1o_A 260 -LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSV-NPI 337 (481)
T ss_dssp -HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCC-CCG
T ss_pred -HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcC-Cch
Confidence 999999999999999999999765 3222111111233 247664 689998666688886654 4332 2221 111
Q ss_pred cccc----------------CCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEE
Q 011959 342 YQAG----------------TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 405 (474)
Q Consensus 342 ~~~~----------------t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~ 405 (474)
+... +.....+.+.+++..+..-.-+++.++..++.+++.+.|+++. ++.........++.
T Consensus 338 yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~---g~~~~~~~~~~~v~ 414 (481)
T 4e1o_A 338 YLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDP---SFEIPAKRHLGLVV 414 (481)
T ss_dssp GGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT---TEECCSCCCSSEEE
T ss_pred hccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEecCCceeEEE
Confidence 1110 1111234444444443211114566777777888887776531 11111122334444
Q ss_pred EEEecCCCcCcccccccchHHHHHHHHHHHHCCeE-eccc---CCcceEEec---CCcHHHHHHHHHHHHHHHhh
Q 011959 406 FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY-FAPS---QFEAGFTSL---AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 406 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~-v~~~---~~~~~~~~~---~~t~e~i~~~l~~l~~~~~~ 473 (474)
+.+.. ......++.+.|.++|++ +.+. +...+|+++ ..|+++|++++++|+++.++
T Consensus 415 f~~~~------------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 477 (481)
T 4e1o_A 415 FRLKG------------PNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATL 477 (481)
T ss_dssp EEESS------------CHHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEeCC------------chHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 44421 123346788889988844 4432 223467753 34899999999999998765
No 219
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.76 E-value=1.3e-17 Score=166.81 Aligned_cols=303 Identities=8% Similarity=-0.066 Sum_probs=182.4
Q ss_pred CCHHHHHHHHHHHHhcCC--CCCC--CHHHHHHHHHHHhhCC-C-CCeEEE-eCCHHHHHHHHHHHhHhhcCCcEEEEEe
Q 011959 116 ADDQVLAALGETMKKGTS--FGAP--CLLENVLAEMVISAVP-S-IEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFE 188 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~--~~~~--~~~~~~la~~l~~~~~-~-~~~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~ 188 (474)
.+|+|++++.+....... ..++ .+...++.++++++++ . .++++| ++||++|++.+++. +.+++ ++...
T Consensus 51 ~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~---l~~~g-v~~v~ 126 (398)
T 2fyf_A 51 VRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFG---LIDKR-SLHLT 126 (398)
T ss_dssp CCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHH---TCSSC-EEEEE
T ss_pred CCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHH---hcCCC-eEEEe
Confidence 578999998773111111 1122 2346789999999986 2 358998 99999999999994 33444 33335
Q ss_pred CCCCCCchh-HHHhc--CCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCC
Q 011959 189 GCYHGHADP-FLVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 265 (474)
Q Consensus 189 ~~yhg~~~~-~~~~~--g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~ 265 (474)
.++|+.... ..... |..+..++.. .+.. .+. .+. +++++|++..++|++|.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~g~~~~~v~~~--~g~~------------~~~-----~i~---~~~~~v~~~~~~nptG~~~~~ 184 (398)
T 2fyf_A 127 YGEFSAKFASAVSKNPFVGEPIIITSD--PGSA------------PEP-----QTD---PSVDVIAWAHNETSTGVAVAV 184 (398)
T ss_dssp CSHHHHHHHHHHHHCTTSCCCEEEECC--TTCC------------CCC-----CCC---TTCSEEEEESEETTTTEECCC
T ss_pred CCHHHHHHHHHHHHhCCCCceEEEecC--CCCC------------CCc-----ccc---CCCCEEEEeCcCCCcceecch
Confidence 566653222 11222 2221111111 1110 011 022 357788888888889999984
Q ss_pred HHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCCCcceEEEEecHHHHHhhcCC----
Q 011959 266 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGGLPVGAYGGRRDIMEMVAPA---- 338 (474)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G~~iG~~~~~~~i~~~~~~~---- 338 (474)
++|.++ ||++||+||+|+.+ .. ...+ .+|++ +++|.++++.++|++++++++++.+...
T Consensus 185 ----~~i~~~---~~~~vivD~a~~~~~~~---~~~~----~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~ 250 (398)
T 2fyf_A 185 ----RRPEGS---DDALVVIDATSGAGGLP---VDIA----ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATG 250 (398)
T ss_dssp ----CCCTTC---C-CEEEEECTTTTTTSC---CCGG----GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTT
T ss_pred ----HHhhhh---cCCeEEEEeccccCCcc---cCcc----cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccC
Confidence 445554 89999999999744 22 1111 25666 5779999543599999999988776310
Q ss_pred ---CCccc----------ccC-CCCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCeeEE--e
Q 011959 339 ---GPMYQ----------AGT-LSGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAICG--G 398 (474)
Q Consensus 339 ---~~~~~----------~~t-~~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v--~ 398 (474)
..... ..+ .+.+..+++++.++|+.+.+. +..++++++.+++.+.|+++ . ++.... +
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~-~--g~~~~~~~~ 327 (398)
T 2fyf_A 251 RWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQER-P--YTTPFVTDP 327 (398)
T ss_dssp CCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHS-T--TEEESCCSG
T ss_pred CCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHc-C--CceeccCCh
Confidence 00000 122 345666777777888765432 34566666677777777654 1 221111 1
Q ss_pred -eece-eEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC----CcceEEecC--CcHHHHHHHHHHHHHH
Q 011959 399 -YISG-MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ----FEAGFTSLA--HSSDDIQHTITAAEKV 470 (474)
Q Consensus 399 -~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----~~~~~~~~~--~t~e~i~~~l~~l~~~ 470 (474)
+.+. ++++.+... ....++.+.|.++||.+.++. ...+|+++. .|++++++++++|+++
T Consensus 328 ~~~~~~~~~~~~~~~-------------~~~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~ 394 (398)
T 2fyf_A 328 GLRSQVVGTIDFVDD-------------VDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWV 394 (398)
T ss_dssp GGBCSSEEEEEECTT-------------SCHHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hhcCCcEEEEECCCC-------------CCHHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 1234 777766321 012578889999999997642 245788765 5999999999999999
Q ss_pred HhhC
Q 011959 471 LRQI 474 (474)
Q Consensus 471 ~~~~ 474 (474)
++++
T Consensus 395 l~~~ 398 (398)
T 2fyf_A 395 VERL 398 (398)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 8764
No 220
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.76 E-value=2.7e-17 Score=164.20 Aligned_cols=281 Identities=15% Similarity=0.146 Sum_probs=173.9
Q ss_pred CCHHHHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHhhCCCCCeEEE---eCCHHHHHHHHHHHhHhhcCCcEEEE
Q 011959 116 ADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRF---VNSGTEACMGVLRLARAFTGRERIIK 186 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~------~~~~~~~~~~~~~la~~l~~~~~~~~~v~~---~~sGseA~~~al~~ar~~~~~~~ii~ 186 (474)
++.+|++++.+.... ...+++......+|.+.+++++ +.+..++ ++||++|+..+++. ....++.||+
T Consensus 30 n~~~vl~a~~~~~~~~~~~~~~~~~~y~~~~~~~Le~~lA~l~-g~e~alv~p~~~sGt~Ai~~al~a--ll~~GD~Vl~ 106 (409)
T 3jzl_A 30 NQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVF-KTEAALVRPQIISGTHAISTVLFG--ILRPDDELLY 106 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGGCCCCTTCTTCHHHHHHHHHHHHHH-TCSEEEEETTSCSHHHHHHHHHHH--HCCTTCEEEE
T ss_pred hHHHHHHHHHHhhhhhhccCCCcCCCCChhHHHHHHHHHHHHh-CCCcEEEECCCccHHHHHHHHHHH--hcCCCCEEEE
Confidence 457788888775421 1234566777888999998888 5566666 89999999999984 2344567777
Q ss_pred Ee-CCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC-----CCHHHHHHHHhcCCCCeEEEEEcc----cc
Q 011959 187 FE-GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEP----VV 256 (474)
Q Consensus 187 ~~-~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~a~vi~ep----~~ 256 (474)
.+ +.|.+. ...+...|... ......+..+..++. .|++++++.++. ++++|++++ ++
T Consensus 107 ~~~~~y~~~-~~~~~~~g~~~---------~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~---~tklV~i~~s~g~p~ 173 (409)
T 3jzl_A 107 ITGQPYDTL-EEIVGIRKQGQ---------GSLKDFHIGYSSVPLLENGDVDFPRIAKKMTP---KTKMIGIQRSRGYAD 173 (409)
T ss_dssp CSSSCCTTH-HHHHTSSSSSS---------SCTGGGTCEEEECCCCTTSCCCHHHHHHHCCT---TEEEEEEECSCTTSS
T ss_pred eCCCCcHhH-HHHHhcccchh---------hHHHHcCCEEEEeCCCCCCCcCHHHHHHhccC---CCeEEEEECCCCCCC
Confidence 76 555553 22221111000 000011122334443 389999998863 689999998 88
Q ss_pred CCCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCCC--cceEEEEecH
Q 011959 257 GNSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGG--LPVGAYGGRR 329 (474)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G--~~iG~~~~~~ 329 (474)
|++|.+.+ +++|.++|++ ||++||+||+|..+ ..... ..+| .|++ +++|.++++ ...|++++++
T Consensus 174 nptg~v~~----l~~I~~la~~~~~~~~livD~a~~~~~~~~~p---~~~g--~Div~~S~sK~lgg~~~~~GG~v~~~~ 244 (409)
T 3jzl_A 174 RPSFTIEK----IKEMIVFVKNINPEVIVFVDNCYGEFVEYQEP---PEVG--ADIIAGSLIKNPGGGLAKTGGYIAGKE 244 (409)
T ss_dssp SCCCCHHH----HHHHHHHHHHHCTTCEEEEECTTCTTTSSCCS---GGGT--CSEEEEETTSGGGTTTCSSCEEEEECH
T ss_pred CCcCcccc----HHHHHHHHHhhCCCCEEEEeCCcccccccCCc---cccC--CeEEEECccccCCccCCceEEEEEeCH
Confidence 88998877 9999999999 99999999999644 22111 1123 4665 799999964 3468889999
Q ss_pred HHHHhhcC--CCCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCee-EEeeeceeEEE
Q 011959 330 DIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI-CGGYISGMFGF 406 (474)
Q Consensus 330 ~i~~~~~~--~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~v~~~g~~~~i 406 (474)
++++.+.. ..+. .+.+.+..+..+.+++..++.+ +..+++..++..++.+.|+++..+. .+. ..++...++.+
T Consensus 245 ~li~~l~~~~~~~~-~g~~~g~~~~~~~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~v-~p~~~~~~~~~i~~i 320 (409)
T 3jzl_A 245 ALVDLCGYRLTTPG-IGREAGASLYSLLEMYQGFFLA--PHVTAQAIKGARFTAAMLAEFGVEA-DPVWDAPRTDLIQSV 320 (409)
T ss_dssp HHHHHHHHHHSCTT-TGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCEE-ESCTTSCCSSSCCEE
T ss_pred HHHHHHHHHhcccc-ccccccccHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhCCCcc-cCCCCCCCccEEEEE
Confidence 99988863 1111 1112222222234444555433 4567778888888888888753211 000 00111225555
Q ss_pred EEecCCCcCcccccccchHHHHHHHHHHHHCC
Q 011959 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 438 (474)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 438 (474)
.+. +.+...+|++.|.+..
T Consensus 321 ~l~-------------~~~~~~~~~~~L~~~~ 339 (409)
T 3jzl_A 321 SFH-------------NKEKMVAFAQAIQAAS 339 (409)
T ss_dssp ECS-------------CHHHHHHHHHHHHHTS
T ss_pred EeC-------------CHHHHHHHHHHHHhcC
Confidence 542 3456678889988874
No 221
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.75 E-value=2e-16 Score=162.41 Aligned_cols=322 Identities=11% Similarity=-0.012 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHhcC-CCC-C--CCHHHHHHHHHHHhhCCCC----------CeEEEeCCHHHHHHHHHHHhHhh--c---
Q 011959 119 QVLAALGETMKKGT-SFG-A--PCLLENVLAEMVISAVPSI----------EMVRFVNSGTEACMGVLRLARAF--T--- 179 (474)
Q Consensus 119 ~v~~a~~~~~~~~~-~~~-~--~~~~~~~la~~l~~~~~~~----------~~v~~~~sGseA~~~al~~ar~~--~--- 179 (474)
.+.+++...+.... .+. . ..+++.+++++++++++-. ..+++++|||+|+..++..+|.. .
T Consensus 89 ~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~ 168 (486)
T 1js3_A 89 MLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQ 168 (486)
T ss_dssp HHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhh
Confidence 36666666654321 111 1 2466778888999888521 35899999999999999877542 1
Q ss_pred ---C--------CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCC---C
Q 011959 180 ---G--------RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNK---G 245 (474)
Q Consensus 180 ---~--------~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~---~ 245 (474)
+ ++.+|+.....|.....++...|..+..++.. ..+. -|+++|++.|++.. .
T Consensus 169 ~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d-~~~~-------------~d~~~L~~~i~~~~~~g~ 234 (486)
T 1js3_A 169 AASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD-GKFA-------------MRASALQEALERDKAAGL 234 (486)
T ss_dssp HHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC-TTSC-------------CCHHHHHHHHHHHHHTTC
T ss_pred ccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecC-CCCC-------------CCHHHHHHHHHHHHhCCC
Confidence 2 12334444444544555555556544332221 1110 18999999997421 1
Q ss_pred CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCC-CCceee--hhhhcCCCcc
Q 011959 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLP 321 (474)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pdi~t--~sK~l~~G~~ 321 (474)
.+.+|++...++++|.+.+ +++|.++|++||++|++|++|.++ .....+.....++ ..|.++ .+|.++..++
T Consensus 235 ~p~~vv~~~~~n~tG~~~~----l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~ 310 (486)
T 1js3_A 235 IPFFVVATLGTTSCCSFDN----LLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFD 310 (486)
T ss_dssp EEEEEEEEBSCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSS
T ss_pred CceEEEEeCCCCCCCCCCC----HHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcc
Confidence 1246666666677898888 999999999999999999999765 3221111111122 246654 6899987688
Q ss_pred eEEEEecHH--HHHhhcCCCCcccc-----------------cCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 011959 322 VGAYGGRRD--IMEMVAPAGPMYQA-----------------GTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 382 (474)
Q Consensus 322 iG~~~~~~~--i~~~~~~~~~~~~~-----------------~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~ 382 (474)
+|+++.+++ +.+.+......... .+.....+++.+++..+..-.-++..++..++.+++.+
T Consensus 311 ~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~ 390 (486)
T 1js3_A 311 CSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEA 390 (486)
T ss_dssp CEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999988654 24444211011000 01112234444444433210014556666777777777
Q ss_pred HHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEeccc----CCcceEEecC---C
Q 011959 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPS----QFEAGFTSLA---H 455 (474)
Q Consensus 383 ~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~----~~~~~~~~~~---~ 455 (474)
.|++. . ++.......+.++.+.+.. ......++.+.|.++|+++... +...+|+++. .
T Consensus 391 ~L~~~-~--~~~~~~~~~~~~v~f~~~~------------~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~ 455 (486)
T 1js3_A 391 FVLQD-P--RFEVCAEVTLGLVCFRLKG------------SDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKV 455 (486)
T ss_dssp HHHHC-T--TEEECSCCCSSEEEEEESS------------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTC
T ss_pred HHhcC-C--CeEEeCCCceeEEEEEecC------------hHHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCC
Confidence 77653 1 1111111234444444421 1122367888888888654322 2235677643 4
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 011959 456 SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 456 t~e~i~~~l~~l~~~~~~ 473 (474)
|+++|++++++|++++++
T Consensus 456 t~~di~~~~~~l~~~~~~ 473 (486)
T 1js3_A 456 ESGHVRLAWEHIRGLAAE 473 (486)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 899999999999988754
No 222
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.75 E-value=1.2e-16 Score=164.47 Aligned_cols=320 Identities=13% Similarity=0.014 Sum_probs=190.1
Q ss_pred CCHHHHHHHHHHHHhcCC-CC-C--CCHHHHHHHHHHHhhCC-C--CC---eEEEeCCHHHHHHHHHHHhHhh-------
Q 011959 116 ADDQVLAALGETMKKGTS-FG-A--PCLLENVLAEMVISAVP-S--IE---MVRFVNSGTEACMGVLRLARAF------- 178 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~-~~-~--~~~~~~~la~~l~~~~~-~--~~---~v~~~~sGseA~~~al~~ar~~------- 178 (474)
.+|.+.+++.+.+..... +. + ..+++.++.++++++++ . .+ ...+++||++|+..++..++.-
T Consensus 68 ~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~ 147 (502)
T 3hbx_A 68 MEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKA 147 (502)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHh
Confidence 589999999887765321 11 1 24566788888999885 2 22 3356999999999998865432
Q ss_pred cC----CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcc
Q 011959 179 TG----RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEP 254 (474)
Q Consensus 179 ~~----~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep 254 (474)
.| +..||+.+.+ |.....++...|..+..++.....+. -|+++|++.+++ ++++|+++.
T Consensus 148 ~G~~~~~~~vi~~~~~-h~s~~~~~~~~G~~~~~v~~~~~~~~-------------~d~~~l~~~i~~---~t~~v~~~~ 210 (502)
T 3hbx_A 148 EGKPVDKPNIVTGANV-QVCWEKFARYFEVELKEVKLSEGYYV-------------MDPQQAVDMVDE---NTICVAAIL 210 (502)
T ss_dssp TTCCCSCCEEEEETTC-CHHHHHHHHHTTCEEEEECCBTTBCS-------------CCHHHHHHHCCT---TEEEEEEEB
T ss_pred cCCCCCCcEEEEcCCc-hHHHHHHHHHcCceeEEEecCCCcCc-------------CCHHHHHHHHhh---CCEEEEEec
Confidence 02 1256655444 55444455555544332221110010 189999998874 577788777
Q ss_pred ccCCCCcccCCHHHHHHHHHHHHHh------CCEEEEeccccCc-c--cCCCccccccC-CCCcee--ehhhhcCCCcce
Q 011959 255 VVGNSGFIAPKPDFLNAIRRITKEN------GALLIFDEVMTGF-R--LAYGGAQEYFG-VTPDLT--TLGKIIGGGLPV 322 (474)
Q Consensus 255 ~~~~~G~i~~~~~~l~~l~~l~~~~------g~llI~DEv~~g~-r--~g~~~~~~~~g-~~pdi~--t~sK~l~~G~~i 322 (474)
+++++|.+.+ +++|.++|++| |++|++|++|.|+ . ........ +. ...|++ +..|.+.++.++
T Consensus 211 ~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~-~~~~~~D~v~~s~hK~l~~p~g~ 285 (502)
T 3hbx_A 211 GSTLNGEFED----VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWD-FRLPLVKSINVSGHKYGLVYAGI 285 (502)
T ss_dssp SCTTTCCBCC----HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCS-TTSTTEEEEEEETTTTTCCCSSC
T ss_pred CCCCCCcccC----HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccc-cCCCCceEEEECcccccCCCCCe
Confidence 7788899988 99999999999 9999999999865 2 11111111 11 123555 456877777889
Q ss_pred EEEEec-HHHH-HhhcCCCCccccc-----C--CCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 323 GAYGGR-RDIM-EMVAPAGPMYQAG-----T--LSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 323 G~~~~~-~~i~-~~~~~~~~~~~~~-----t--~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
|+++.+ ++.+ +.+... ..+..+ + ++.+.....+..++++.+.. ....++..++.+++.+.|+++
T Consensus 286 G~~~~~~~~~l~~~~~~~-~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~--- 361 (502)
T 3hbx_A 286 GWVIWRNKEDLPEELIFH-INYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKT--- 361 (502)
T ss_dssp EEEEESSGGGSCGGGCEE-ECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred EEEEEeCHHHhhHHhccC-cccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 988665 4443 222110 011110 1 22222233444455554432 345566667777777777654
Q ss_pred cCCeeEEe--eeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC-------cceEEe--cCCcHHH
Q 011959 391 AGHAICGG--YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF-------EAGFTS--LAHSSDD 459 (474)
Q Consensus 391 ~~~~~~v~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------~~~~~~--~~~t~e~ 459 (474)
+....+. ....++.+.+..... .....+.+.|.++|+++..... ..+|++ ..+|+++
T Consensus 362 -~~~~~~~~~~~~~~v~f~~~~~~~-----------~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~ed 429 (502)
T 3hbx_A 362 -ERFNIVSKDEGVPLVAFSLKDSSC-----------HTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTL 429 (502)
T ss_dssp -TCEEECSCSSSSSEEEEEESSCSS-----------CCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHH
T ss_pred -CCEEEEeCCCCceEEEEEecCCCc-----------CCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHH
Confidence 3111111 234556666543210 1124788999999998753321 235664 4569999
Q ss_pred HHHHHHHHHHHHhh
Q 011959 460 IQHTITAAEKVLRQ 473 (474)
Q Consensus 460 i~~~l~~l~~~~~~ 473 (474)
++.+++.|++++++
T Consensus 430 id~li~~L~~~l~~ 443 (502)
T 3hbx_A 430 AERLVIDIEKVMRE 443 (502)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 223
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.75 E-value=4.6e-16 Score=160.37 Aligned_cols=334 Identities=13% Similarity=0.025 Sum_probs=192.4
Q ss_pred CHHH-HHHHHHHHHhcC-CCCC---CCHHHHHHHHHHHhhCC-C--CCeEEEeCCHHHHHHHHHHHhHhhc-------C-
Q 011959 117 DDQV-LAALGETMKKGT-SFGA---PCLLENVLAEMVISAVP-S--IEMVRFVNSGTEACMGVLRLARAFT-------G- 180 (474)
Q Consensus 117 ~p~v-~~a~~~~~~~~~-~~~~---~~~~~~~la~~l~~~~~-~--~~~v~~~~sGseA~~~al~~ar~~~-------~- 180 (474)
+|.+ .+++.+.+.... .+.. ..+++.+++++++++++ . .+.++|++||++|+..++..++... |
T Consensus 108 ~~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~ 187 (511)
T 3vp6_A 108 IIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGM 187 (511)
T ss_dssp HHHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCG
T ss_pred HHHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCc
Confidence 3444 355555554422 2211 23567788888888875 2 3589999999999999999876531 1
Q ss_pred ---CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC-----CHHHHHHHHhcC---CCCeEE
Q 011959 181 ---RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN-----DVSALENLFENN---KGEIAA 249 (474)
Q Consensus 181 ---~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~a~ 249 (474)
++.+|+.....|.....++...|.+.. .+..+|.+ |+++|++.|++. +..+++
T Consensus 188 ~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~----------------~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~ 251 (511)
T 3vp6_A 188 AAVPKLVLFTSEQSHYSIKKAGAALGFGTD----------------NVILIKCNERGKIIPADFEAKILEAKQKGYVPFY 251 (511)
T ss_dssp GGSCCEEEEEETTSCTHHHHHHHHTTSCGG----------------GEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCeEEEECCCchHHHHHHHHHcCCCCC----------------cEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEE
Confidence 344556666667666666665554221 12222221 899999999742 223788
Q ss_pred EEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCC-CCcee--ehhhhcCCCcceEEE
Q 011959 250 IILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLT--TLGKIIGGGLPVGAY 325 (474)
Q Consensus 250 vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pdi~--t~sK~l~~G~~iG~~ 325 (474)
|+++.+++++|.+.+ +++|.++|++||++|++|++|.+. .....+.....|+ ..|++ +.+|.+++.+.+|++
T Consensus 252 vv~~~~~~~~G~vd~----l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l 327 (511)
T 3vp6_A 252 VNATAGTTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAI 327 (511)
T ss_dssp EEEEBSCSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEE
T ss_pred EEEecCCCCCccccc----HHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEE
Confidence 888888888999988 999999999999999999999765 3221111111232 34665 478999866678888
Q ss_pred EecH-HHHHhhcCCCCccccc------------------CCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 011959 326 GGRR-DIMEMVAPAGPMYQAG------------------TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIID 386 (474)
Q Consensus 326 ~~~~-~i~~~~~~~~~~~~~~------------------t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~ 386 (474)
+.++ ++++........+... +.....+.+.+++..+..-.-+++.++..++.+++++.|++
T Consensus 328 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~ 407 (511)
T 3vp6_A 328 LVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKN 407 (511)
T ss_dssp EESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred EEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6654 4454432111111100 00122333444443332111145677777788888888765
Q ss_pred HhhhcCCeeEE--eeeceeEEEEEecCCCcCcccc---cccchHHHHHHHHHHHHCCeEeccc---C--CcceEEe---c
Q 011959 387 AGKKAGHAICG--GYISGMFGFFFTEGPVYNFEDA---KKSETTKFARFYRGMLEEGVYFAPS---Q--FEAGFTS---L 453 (474)
Q Consensus 387 ~~~~~~~~~~v--~~~g~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~Gv~v~~~---~--~~~~~~~---~ 453 (474)
. . ++.... .....++.+.+........... .........++.+.|+++|+++... . ...+|++ .
T Consensus 408 ~-p--g~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~ 484 (511)
T 3vp6_A 408 R-E--EFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNP 484 (511)
T ss_dssp C-T--TEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCT
T ss_pred C-C--CEEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCC
Confidence 3 1 111111 1334444544432111100000 0000112346888999999654331 1 1246664 4
Q ss_pred CCcHHHHHHHHHHHHHHHhh
Q 011959 454 AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 454 ~~t~e~i~~~l~~l~~~~~~ 473 (474)
.++++||+.+++.|++.-+.
T Consensus 485 ~~t~~di~~ll~~i~~~~~~ 504 (511)
T 3vp6_A 485 AATQSDIDFLIEEIERLGQD 504 (511)
T ss_dssp TCCHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 56999999999999987654
No 224
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.75 E-value=1.7e-16 Score=162.10 Aligned_cols=301 Identities=11% Similarity=0.041 Sum_probs=179.8
Q ss_pred CHHHHHHHHHHHhhCCCC----------CeEEEeCCHHHHHHHHHHHhHhhc-------C---------CcEEEEEeCCC
Q 011959 138 CLLENVLAEMVISAVPSI----------EMVRFVNSGTEACMGVLRLARAFT-------G---------RERIIKFEGCY 191 (474)
Q Consensus 138 ~~~~~~la~~l~~~~~~~----------~~v~~~~sGseA~~~al~~ar~~~-------~---------~~~ii~~~~~y 191 (474)
.+++.++.+++++.++-. ...+|++|||+||..|+..+|... + ++.+|+.+...
T Consensus 112 ~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~ 191 (475)
T 3k40_A 112 TELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQA 191 (475)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTS
T ss_pred HHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCc
Confidence 467788888999988522 268999999999999999886442 1 23456666666
Q ss_pred CCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcC---CCCeEEEEEccccCCCCcccCCHHH
Q 011959 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN---KGEIAAIILEPVVGNSGFIAPKPDF 268 (474)
Q Consensus 192 hg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (474)
|.....++...|..+..++... .+ -|+++|++.|++. +..+.+|++....+++|.+.|
T Consensus 192 H~s~~~~~~~~g~~~~~v~~d~-~~--------------~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~---- 252 (475)
T 3k40_A 192 HSSVERAGLLGGVKLRSVQSEN-HR--------------MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY---- 252 (475)
T ss_dssp CHHHHHHHHHHTCEEEEECCBT-TB--------------CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----
T ss_pred hHHHHHHHHHcCCceEEEECCC-CC--------------cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC----
Confidence 7666666555565433322211 11 1899999998752 112556666666677899988
Q ss_pred HHHHHHHHHHhCCEEEEeccccCc-ccCCCccccccCC-CCceee--hhhhcCCCcceEEEEecHH-HH-HhhcCCCCcc
Q 011959 269 LNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGGRRD-IM-EMVAPAGPMY 342 (474)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~~g~-~pdi~t--~sK~l~~G~~iG~~~~~~~-i~-~~~~~~~~~~ 342 (474)
+++|.++|++||+++++|++|.+. .....+.....|+ ..|.++ ..|.+++...+|+++.+++ .+ +.+... ..+
T Consensus 253 l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~-~~y 331 (475)
T 3k40_A 253 LDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVD-PLY 331 (475)
T ss_dssp HHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC-----------
T ss_pred HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcCC-ccc
Confidence 999999999999999999999754 3221111111233 347664 6799987677888866543 32 222110 001
Q ss_pred ccc------------CC-CCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEE
Q 011959 343 QAG------------TL-SGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406 (474)
Q Consensus 343 ~~~------------t~-~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i 406 (474)
... +. .+-+.......++|+.+.. +++.++..++.+++.+.|+++. ++....+....++.+
T Consensus 332 l~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~---g~~l~~~~~~~iv~f 408 (475)
T 3k40_A 332 LKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADS---RFELAAEINMGLVCF 408 (475)
T ss_dssp -----------------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST---TEEESSCCBTTEEEE
T ss_pred cCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCC---CEEEecCCceEEEEE
Confidence 000 00 1111222333344443322 4566777778888888887641 111111123344444
Q ss_pred EEecCCCcCcccccccchHHHHHHHHHHHHCCeEe-ccc---CCcceEEecC---CcHHHHHHHHHHHHHHHhh
Q 011959 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYF-APS---QFEAGFTSLA---HSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v-~~~---~~~~~~~~~~---~t~e~i~~~l~~l~~~~~~ 473 (474)
.+.. ......++.+.|.++|.++ .+. +...+|+++. .|++||++++++|+++.++
T Consensus 409 ~~~~------------~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~ 470 (475)
T 3k40_A 409 RLKG------------SNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAADE 470 (475)
T ss_dssp EESS------------CHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeCC------------chHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4421 2233467888898888654 332 2335677643 4899999999999998765
No 225
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.73 E-value=3.5e-16 Score=156.75 Aligned_cols=279 Identities=16% Similarity=0.129 Sum_probs=174.6
Q ss_pred CCHHHHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHhhCCCCCeEEE---eCCHHHHHHHHHHHhHhhcCCcEEEE
Q 011959 116 ADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVPSIEMVRF---VNSGTEACMGVLRLARAFTGRERIIK 186 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~------~~~~~~~~~~~~~la~~l~~~~~~~~~v~~---~~sGseA~~~al~~ar~~~~~~~ii~ 186 (474)
++++|++|+.+.... ...|+++.....+|.+.+++++ +.+..++ ++||++|+..++.. ....++.|++
T Consensus 45 n~~~Vl~a~~~~~~~~~~~~~~~gy~Y~~~g~~~Le~~lA~l~-g~e~alv~p~~~sGt~A~~~al~a--ll~pGD~Vl~ 121 (427)
T 3hvy_A 45 NQLKVLKAFQEERISESHFTNSSGYGYNDIGRDSLDRVYANIF-NTESAFVRPHFVNGTHAIGAALFG--NLRPNDTMMS 121 (427)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHH-TCSEEEEETTCCSHHHHHHHHHHH--TCCTTCEEEE
T ss_pred hHHHHHHHHHHHHHHHHhcccCcCCCCCchhHHHHHHHHHHHh-CCCceEEeCCCCcHHHHHHHHHHH--hcCCCCEEEE
Confidence 357888888775321 1235566667788889998888 5566666 89999999999984 2445677887
Q ss_pred Ee-CCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC----CCHHHHHHHHhcCCCCeEEEEEcc----ccC
Q 011959 187 FE-GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF----NDVSALENLFENNKGEIAAIILEP----VVG 257 (474)
Q Consensus 187 ~~-~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~----~d~~~le~~l~~~~~~~a~vi~ep----~~~ 257 (474)
.+ +.|++.. ... .+... + ........+..+..++. .|+++++++++++ +++++|++++ ++|
T Consensus 122 ~~~~~y~~~~-~~~--g~~~~-----~-~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~-~~tklV~i~~s~gyp~n 191 (427)
T 3hvy_A 122 ICGMPYDTLH-DII--GMDDS-----K-KVGSLREYGVKYKMVDLKDGKVDINTVKEELKKD-DSIKLIHIQRSTGYGWR 191 (427)
T ss_dssp CSSSCCGGGH-HHH--TCCTT-----C-CSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHC-TTEEEEEEESSCCSSSS
T ss_pred eCCCCchhHH-HHh--ccccc-----h-hhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCC-CCCEEEEEECCCCCCCC
Confidence 77 6776642 111 00000 0 00001111223444444 4899999999742 2689999999 778
Q ss_pred CCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCCC--cceEEEEecHH
Q 011959 258 NSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGGG--LPVGAYGGRRD 330 (474)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~G--~~iG~~~~~~~ 330 (474)
++|.+.+ +++|+++|++ ||++||+||+|..+ ...... .+| .|++ |++|.++++ .+.|+++++++
T Consensus 192 ptg~v~d----l~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~---~~g--aDiv~~S~sK~lgg~g~~~GG~i~~~~~ 262 (427)
T 3hvy_A 192 KSLRIAE----IAEIIKSIREVNENVIVFVDNCYGEFVEEKEPT---DVG--ADIIAGSLIKNIGGGIATTGGYIAGKEE 262 (427)
T ss_dssp CCCCHHH----HHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGG---GGT--CSEEEEETTSGGGTTTCCSCEEEEECHH
T ss_pred ccccHHH----HHHHHHHHHHhCCCCEEEEECCccccccCCCCc---ccC--CeEEEECCcccccccccceEEEEEECHH
Confidence 8888876 9999999999 89999999999644 222111 123 3554 799999964 45688899999
Q ss_pred HHHhhcCC--CCcccccCCCCChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeee-----cee
Q 011959 331 IMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYI-----SGM 403 (474)
Q Consensus 331 i~~~~~~~--~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~-----g~~ 403 (474)
+++.++.. .+. .+.+.+.++..+..++..++.+ +...++..++..++.+.|++.. ... .++. ..+
T Consensus 263 li~~l~~~~~~~~-~g~~~~~~~~~a~~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~g----~~V-~p~~~~~~~~li 334 (427)
T 3hvy_A 263 YVTQATFRVTVPG-IGGECGSTFGVMRSLYEGLFMA--PHVTIEAVKGAVFCARIMELAG----FDV-LPKYNDKRTDII 334 (427)
T ss_dssp HHHHHHHHHSCTT-TGGGCCCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTT----CEE-ESCTTSCCSSSE
T ss_pred HHHHHHHHhhcCC-cccccCCCHHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHhCC----Cee-cCCCCCCCceEE
Confidence 99888631 111 1112222222234444444433 4567778888888888887653 211 1222 225
Q ss_pred EEEEEecCCCcCcccccccchHHHHHHHHHHHHC
Q 011959 404 FGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 437 (474)
Q Consensus 404 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 437 (474)
+.+.+. +.+...+|++.|...
T Consensus 335 ~~~~l~-------------~~~~~~~f~~~l~~~ 355 (427)
T 3hvy_A 335 QAIKFN-------------DEKKLIDFIKGIQTA 355 (427)
T ss_dssp EEEECS-------------SHHHHHHHHHHHHHT
T ss_pred EEEeCC-------------CHHHHHHHHHHhccc
Confidence 555553 335567788888775
No 226
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.72 E-value=9.3e-16 Score=153.63 Aligned_cols=277 Identities=17% Similarity=0.154 Sum_probs=172.3
Q ss_pred CHHHHHHHHHHHH--h----cCCCCCCCHHHHHHHHHHHhhCCCCCeEEE---eCCHHHHHHHHHHHhHhhcCCcEEEEE
Q 011959 117 DDQVLAALGETMK--K----GTSFGAPCLLENVLAEMVISAVPSIEMVRF---VNSGTEACMGVLRLARAFTGRERIIKF 187 (474)
Q Consensus 117 ~p~v~~a~~~~~~--~----~~~~~~~~~~~~~la~~l~~~~~~~~~v~~---~~sGseA~~~al~~ar~~~~~~~ii~~ 187 (474)
.++|++|+.+... . ...|++......+|.+.+++++ +.+..++ ++||++|+..++.. ...+++.||+.
T Consensus 45 ~~~Vl~A~~~~~~~~~~~~~~~gy~y~~~~~~~Le~~lA~l~-g~e~alv~p~~~sGt~Ai~~al~a--ll~pGD~Vl~~ 121 (427)
T 3i16_A 45 QLKVLNAFQEERISEAHFTNSSGYGYGDIGRDSLDAVYARVF-NTESALVRPHFVNGTHALGAALFG--NLRPGNTMLSV 121 (427)
T ss_dssp HHHHHHHHHHTTCCGGGSCCCCTTCTTCHHHHHHHHHHHHHH-TCSEEEEETTCCSHHHHHHHHHHH--HCCTTCEEEES
T ss_pred HHHHHHHHHHhchhHHhcCCCCCCCCCHHHHHHHHHHHHHHh-CCcceEEeCCCccHHHHHHHHHHH--HhCCCCEEEEe
Confidence 3678888776421 1 1235566677888889999888 4555566 89999999999984 23455777777
Q ss_pred e-CCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccC-----CCHHHHHHHHhcCCCCeEEEEEcc----ccC
Q 011959 188 E-GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF-----NDVSALENLFENNKGEIAAIILEP----VVG 257 (474)
Q Consensus 188 ~-~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~a~vi~ep----~~~ 257 (474)
+ +.|++... .+...+.. ........+..+..++. .|++++++.++++ +++++|++++ ++|
T Consensus 122 ~~~~y~~~~~-~~g~~~~~--------~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~n 191 (427)
T 3i16_A 122 CGEPYDTLHD-VIGITENS--------NMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWR 191 (427)
T ss_dssp SSSCCGGGHH-HHTCSCCC--------SSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSS
T ss_pred CCCccHHHHH-HHhccccc--------hHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCC
Confidence 7 66665321 11000000 00000111223444444 3899999999842 3689999999 788
Q ss_pred CCCcccCCHHHHHHHHHHHHH--hCCEEEEeccccCc-ccCCCccccccCCCCcee--ehhhhcCC-C-cceEEEEecHH
Q 011959 258 NSGFIAPKPDFLNAIRRITKE--NGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLT--TLGKIIGG-G-LPVGAYGGRRD 330 (474)
Q Consensus 258 ~~G~i~~~~~~l~~l~~l~~~--~g~llI~DEv~~g~-r~g~~~~~~~~g~~pdi~--t~sK~l~~-G-~~iG~~~~~~~ 330 (474)
++|.+.+ +++|.++|++ ||++||+||+|..+ ...... .+| .|++ +++|.+++ | .+.|+++++++
T Consensus 192 ptg~i~d----l~~i~~la~~~~~g~~livD~a~~~~~~~~~p~---~~g--aDiv~~S~sK~lgg~g~~~gG~i~~~~~ 262 (427)
T 3i16_A 192 RALLIED----IKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPT---DVG--ADLIAGSLIKNIGGGIAPTGGYLAGTKD 262 (427)
T ss_dssp CCCCHHH----HHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGG---GGT--CSEEEEETTSGGGTTTCCSCEEEEECHH
T ss_pred CcccHHH----HHHHHHHHHHhCCCCEEEEECCCccccccCCcc---ccC--CeEEEecCcccCCCCCCceEEEEEECHH
Confidence 8888877 9999999999 99999999999644 222111 123 3554 79999996 4 46799999999
Q ss_pred HHHhhcC--CCCcccccCCCCChHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeece-----
Q 011959 331 IMEMVAP--AGPMYQAGTLSGNPLA-MTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG----- 402 (474)
Q Consensus 331 i~~~~~~--~~~~~~~~t~~~~~~~-~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~----- 402 (474)
+++.++. ..+. .+... ++.+. +..++..++.+ +...++..++..++.+.|++.. ... .++...
T Consensus 263 li~~l~~~~~~~~-~g~~~-~~~~~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g----~~V-~p~~~~~~~~~ 333 (427)
T 3i16_A 263 CIEKTSYRLTVPG-IGGEC-GSTFGVVRSMYQGLFLA--PHISMEALKGAILCSRIMELAG----FEV-MPKYDEKRSDI 333 (427)
T ss_dssp HHHHHHHHHSCTT-TGGGC-CCCTTCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTT----CEE-ESCTTSCCSSS
T ss_pred HHHHHHHhcccCc-cCccC-CccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhCC----Cee-cCCCCCCCccE
Confidence 9988863 1111 11111 11122 33344444432 4567778888888888887753 211 122222
Q ss_pred eEEEEEecCCCcCcccccccchHHHHHHHHHHHHC
Q 011959 403 MFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEE 437 (474)
Q Consensus 403 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 437 (474)
++.+.+. +.+...+|++.|...
T Consensus 334 i~~i~l~-------------~~~~~~~f~~~l~~~ 355 (427)
T 3i16_A 334 IQSIKFN-------------DKDKLIEFCKGIQTG 355 (427)
T ss_dssp CEEEECS-------------SHHHHHHHHHHHHHT
T ss_pred EEEEEEC-------------CHHHHHHHHHHHhhc
Confidence 5566553 345567888888876
No 227
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.64 E-value=5.7e-15 Score=156.94 Aligned_cols=310 Identities=10% Similarity=-0.021 Sum_probs=169.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCe-EEEeCCHHHHHHHHHHHhHhhc-CCcEEEEEeCCCCCCchhHHHhcCCCCccCCCC-C
Q 011959 137 PCLLENVLAEMVISAVPSIEM-VRFVNSGTEACMGVLRLARAFT-GRERIIKFEGCYHGHADPFLVKAGSGVATLGLP-D 213 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~-v~~~~sGseA~~~al~~ar~~~-~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~-~ 213 (474)
+.....++.+.+++.++ .+. ++++||+++|+.+++.. +. .+++||+..++|+....+.+...|..+...... .
T Consensus 171 ~~~~i~e~e~~lA~~~g-ae~~i~v~nGtt~an~~ai~a---l~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~~ 246 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVYN-ADKTYFVLGGSSNANNTVTSA---LVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRN 246 (730)
T ss_dssp TBTHHHHHHHHHHHHTT-CSEEEEESSHHHHHHHHHHHH---HCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEEC
T ss_pred ChHHHHHHHHHHHHHHC-CCcEEEECCHHHHHHHHHHHH---hcCCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCcc
Confidence 34456788888888885 444 45555556999999984 44 455666666555443333244444422211100 0
Q ss_pred CCCCCCCCCCceEEccCCCHHHH-----HHHHhcC-CC---C--e-EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCC
Q 011959 214 SPGVPKGATYETLTAPFNDVSAL-----ENLFENN-KG---E--I-AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGA 281 (474)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~d~~~l-----e~~l~~~-~~---~--~-a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~ 281 (474)
..++ ...+ |+++| ++.++++ ++ . . ++|+++.. +.+|.+.+ +++|.++|++||+
T Consensus 247 ~~~i-------~g~i---d~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d----l~~I~~la~~~g~ 311 (730)
T 1c4k_A 247 PYGF-------IGGI---YDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN----AHEVVKRIGHLCD 311 (730)
T ss_dssp TTCC-------EEEE---CGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC----HHHHHHHHGGGBS
T ss_pred ccCc-------cCCC---CHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC----HHHHHHHHHHcCC
Confidence 0000 0011 55555 8888754 11 1 1 45544432 35899988 9999999999999
Q ss_pred EEEEeccccCc-ccCCC------ccccccCCC-Cc-ee--ehhhhcCCCcce-EEEEecHHHH---------HhhcCCCC
Q 011959 282 LLIFDEVMTGF-RLAYG------GAQEYFGVT-PD-LT--TLGKIIGGGLPV-GAYGGRRDIM---------EMVAPAGP 340 (474)
Q Consensus 282 llI~DEv~~g~-r~g~~------~~~~~~g~~-pd-i~--t~sK~l~~G~~i-G~~~~~~~i~---------~~~~~~~~ 340 (474)
+||+||+|.+. ..+.. ...+.+|.. ++ ++ +++|+++ |++. |++..+++.+ ..+.. .
T Consensus 312 ~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~-g~~~gg~I~v~~~~l~g~~~~i~~~~~~~--~ 388 (730)
T 1c4k_A 312 YIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQA-GFSQTSQIHKKDSHIKGQLRYCDHKHFNN--S 388 (730)
T ss_dssp EEEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSS-CCTTCEEEEEECGGGTTSTTCCCHHHHHH--H
T ss_pred eEEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCC-CCCCEEEEEecchhhcCcccccCHHHHHH--H
Confidence 99999999632 22211 111123432 22 33 6899986 4444 4554443321 11110 0
Q ss_pred cccccCCCCChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHH-H-hhhcCCeeEEe-----------------
Q 011959 341 MYQAGTLSGNPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIID-A-GKKAGHAICGG----------------- 398 (474)
Q Consensus 341 ~~~~~t~~~~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~v~----------------- 398 (474)
.....+.+.++..+++..++++.+.. .++++++.++.+++++.|++ + ..+.-.+..+.
T Consensus 389 ~~~~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~ 468 (730)
T 1c4k_A 389 FNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNID 468 (730)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGG
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccch
Confidence 11222445677777777777776653 45678888888889988877 2 11100000000
Q ss_pred --------------e--ece-e-----EEEEEecC--CCcCcccccccchHHHHHHHHHHHHCCeEecccCCcceEE--e
Q 011959 399 --------------Y--ISG-M-----FGFFFTEG--PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFT--S 452 (474)
Q Consensus 399 --------------~--~g~-~-----~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~--~ 452 (474)
+ .+. + +.+....- ....+. ........+.+.|.++||++...+...+++ +
T Consensus 469 ~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~----~~g~~~~~l~~~L~e~GI~v~~~~~~~ir~~~s 544 (730)
T 1c4k_A 469 YWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYE----DFGVPATIVANYLRDHGIIPEKSDLNSILFLMT 544 (730)
T ss_dssp GGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEEC----SSCCCHHHHHHHHHHTTCCCSEECSSEEEEECC
T ss_pred hhccCccchhccccccCCcccccCCeEEEEEeCCccccccccc----ccCCCHHHHHHHHHHCCcEEEECCCCeEEEEeC
Confidence 0 010 0 11111000 000000 001123568889999999998776555655 5
Q ss_pred cCCcHHHHHHHHHHHHHHHh
Q 011959 453 LAHSSDDIQHTITAAEKVLR 472 (474)
Q Consensus 453 ~~~t~e~i~~~l~~l~~~~~ 472 (474)
..+|++++++++++|.++.+
T Consensus 545 ~g~t~e~i~~Ll~aL~~i~~ 564 (730)
T 1c4k_A 545 PAETPAKMNNLITQLLQLQR 564 (730)
T ss_dssp TTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 67799999999999998764
No 228
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.61 E-value=1.3e-14 Score=155.52 Aligned_cols=235 Identities=9% Similarity=0.030 Sum_probs=138.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCC-C
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS-P 215 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~-~ 215 (474)
+.....++.+.+++.++..+.++++||+++|+..++.. ....++.|++..++|+. ....+...|..+...+.... .
T Consensus 203 ~~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~a--l~~~GD~Vlv~~~~h~s-~~~~~~~~G~~~v~v~~~~~~~ 279 (755)
T 2vyc_A 203 HTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQA--CMTDNDVVVVDRNCHKS-IEQGLMLTGAKPVYMVPSRNRY 279 (755)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH--HCCTTCEEEEESSCCHH-HHHHHHHHCCEEEEECCCBCTT
T ss_pred CccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHH--hcCCCCEEEECCCchHH-HHHHHHHcCCEEEEEeCCCCcc
Confidence 34555677777777774333455666667899999984 22345667766666554 33445555654322211100 0
Q ss_pred CCCCCCCCceEEccCCCHHHHHHHHhcCCCC-------e-EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 011959 216 GVPKGATYETLTAPFNDVSALENLFENNKGE-------I-AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~-------~-a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DE 287 (474)
+.. ..+....-|+++|++.++++++. + .+++++| +.+|.+.+ +++|.++|++||++||+||
T Consensus 280 g~~-----g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p--n~~G~v~d----l~~I~~ia~~~~~~livDe 348 (755)
T 2vyc_A 280 GII-----GPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC--TYDGVCYN----AKEAQDLLEKTSDRLHFDE 348 (755)
T ss_dssp SCB-----CCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS--CTTSEEEC----HHHHHHHHTTTCSEEEEEC
T ss_pred ccc-----cccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC--CCCceecC----HHHHHHHHHHcCCEEEEEC
Confidence 100 00000001799999999764322 1 3445554 45899988 9999999999999999999
Q ss_pred cccCc-ccCCCc--cccccC--CC---Cc---eeehhhhcCCCcc-eEEEEecHH--HH--HhhcCCCCcccccCCCCCh
Q 011959 288 VMTGF-RLAYGG--AQEYFG--VT---PD---LTTLGKIIGGGLP-VGAYGGRRD--IM--EMVAPAGPMYQAGTLSGNP 351 (474)
Q Consensus 288 v~~g~-r~g~~~--~~~~~g--~~---pd---i~t~sK~l~~G~~-iG~~~~~~~--i~--~~~~~~~~~~~~~t~~~~~ 351 (474)
+|.+. ..+..+ .....+ .. +. +.+++|+++ |++ .|+++++++ .+ ..+.. ......+.+.+.
T Consensus 349 A~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~-g~~~g~~i~~~~~~~~i~~~~~~~--~~~~~~s~sp~~ 425 (755)
T 2vyc_A 349 AWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLN-ALSQASYIHVREGRGAINFSRFNQ--AYMMHATTSPLY 425 (755)
T ss_dssp TTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSS-CCTTCEEEEEECCBTCCCHHHHHH--HHHHTSCSSCCH
T ss_pred cCchhcccCcccCCcchhcCCcCCccCCCeEEEECcccccc-CcCCeeeeeecCcccccCHHHHHH--HHHHhCCCCHHH
Confidence 99643 322111 011123 11 11 237899986 444 566666543 11 12211 111222446677
Q ss_pred HHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHh
Q 011959 352 LAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAG 388 (474)
Q Consensus 352 ~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~ 388 (474)
+.+++..++++.+.. +++++++.++.++++++|+++.
T Consensus 426 ~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~ 465 (755)
T 2vyc_A 426 AICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLY 465 (755)
T ss_dssp HHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 788887888887765 3578889999999999998863
No 229
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.61 E-value=1.1e-14 Score=153.64 Aligned_cols=308 Identities=8% Similarity=-0.008 Sum_probs=180.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCeEEEeCCH-HHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCC
Q 011959 137 PCLLENVLAEMVISAVPSIEMVRFVNSG-TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP 215 (474)
Q Consensus 137 ~~~~~~~la~~l~~~~~~~~~v~~~~sG-seA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~ 215 (474)
+.....++.+.+++.+ +.++.+|+++| +.||.+++. ++.++++.|+.+...|.+....+..+|..+..+.... .
T Consensus 193 ~~g~i~eaE~~lA~~f-Ga~~a~~v~nGts~An~~ai~---al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~-~ 267 (715)
T 3n75_A 193 HSGPHKEAEQYIARVF-NADRSYMVTNGTSTANKIVGM---YSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTR-N 267 (715)
T ss_dssp TBTHHHHHHHHHHHHH-TCSEEEEESSHHHHHHHHHHH---HHCCTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCB-C
T ss_pred CcHHHHHHHHHHHHHh-CCCCceEECcHHHHHHHHHHH---HhCCCCCEEEECCCccHHHHHHHHHcCCEEEEEeccc-c
Confidence 3444567777787777 56777776666 699999888 5555555555556666666666777665433221110 0
Q ss_pred CCCCCCCCceEEccCC------CHHHHHHHHhcCCCCe---EEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 011959 216 GVPKGATYETLTAPFN------DVSALENLFENNKGEI---AAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286 (474)
Q Consensus 216 g~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~~---a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D 286 (474)
. +.++++ |+++|+++++++++.. ++|+++| +..|.+.+ +++|.++|++++ ||+|
T Consensus 268 ~---------~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p--n~~G~v~d----l~~I~ela~~~~--livD 330 (715)
T 3n75_A 268 A---------YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS--TYDGLLYN----TDFIKKTLDVKS--IHFD 330 (715)
T ss_dssp T---------TCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS--CTTSEEEC----HHHHHHHCCCSE--EEEE
T ss_pred c---------cccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC--CCCCccCC----HHHHHHHhCcCc--EEEc
Confidence 0 011111 7999999998754322 3555566 67899998 999999998764 7999
Q ss_pred ccccCc-ccCCCcc-cc--ccCCCCce-----eehhhhcCCCc-ceEEEEecHHH-HHhhcCCCCcccccCCCCChHHHH
Q 011959 287 EVMTGF-RLAYGGA-QE--YFGVTPDL-----TTLGKIIGGGL-PVGAYGGRRDI-MEMVAPAGPMYQAGTLSGNPLAMT 355 (474)
Q Consensus 287 Ev~~g~-r~g~~~~-~~--~~g~~pdi-----~t~sK~l~~G~-~iG~~~~~~~i-~~~~~~~~~~~~~~t~~~~~~~~a 355 (474)
|+|.+. ..+..+. .. ..+..+|+ .|++|++++ + ..|++.+++++ .+.+.. ......|.+.+++.++
T Consensus 331 EAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~g-ltqgs~i~v~~~i~~~~~~~--~~~~~~STSpsy~~~A 407 (715)
T 3n75_A 331 SAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNE--AYMMHTTTSPHYGIVA 407 (715)
T ss_dssp CTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSC-CTTCEEEEEESCCCHHHHHH--HHHHTSCSSCCHHHHH
T ss_pred cccccccccCCccccccccccCcCCCEEEEEEecccccccC-CCCeeEEEeCchhhHHHHHH--HHHhhcCCCchHHHHH
Confidence 999533 2222111 11 12222564 368999874 3 36777666542 112221 1112335578888999
Q ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhc-CCeeE------EeeeceeEEEE----------------Ee
Q 011959 356 AGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKA-GHAIC------GGYISGMFGFF----------------FT 409 (474)
Q Consensus 356 aa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~------v~~~g~~~~i~----------------~~ 409 (474)
+..++++.++. +++++++.++.+++++.|+++.... +.... +.+... +.++ +.
T Consensus 408 sldaA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~w~gf~~~~~~~~~~ 486 (715)
T 3n75_A 408 STETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTEC-WPLRSDSTWHGFKNIDNEHMYL 486 (715)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSC-EECCTTCCTTCCTTCCSSSEEE
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhh-hccCcccccccccccccCcccC
Confidence 98899988762 5688999999999999998874311 00000 000000 0000 00
Q ss_pred cCCCcCcccccc----c----chHHHHHHHHHHHHCCeEecccCCcceE-E-ecCCcHHHHHHHHHHHHHHH
Q 011959 410 EGPVYNFEDAKK----S----ETTKFARFYRGMLEEGVYFAPSQFEAGF-T-SLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 410 ~~~~~~~~~~~~----~----~~~~~~~~~~~l~~~Gv~v~~~~~~~~~-~-~~~~t~e~i~~~l~~l~~~~ 471 (474)
++.+-...... . ..-....+.+.|.++||.+.-.....+. + +...|++++++++++|.++-
T Consensus 487 -Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~~~ 557 (715)
T 3n75_A 487 -DPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFK 557 (715)
T ss_dssp -CTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred -CCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 11000000000 0 0111245677788899988766544443 3 66779999999999988754
No 230
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.61 E-value=2.9e-14 Score=144.24 Aligned_cols=281 Identities=16% Similarity=0.145 Sum_probs=157.7
Q ss_pred HHHHHHHHHHHhhCC-CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHH----hcCCCCccCCCCC
Q 011959 139 LLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV----KAGSGVATLGLPD 213 (474)
Q Consensus 139 ~~~~~la~~l~~~~~-~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~----~~g~~~~~~~~~~ 213 (474)
+...++.++++++++ +.+.+.+++|++.++++++... ...++++||+.++.|+. +...+. ..|..+..++.
T Consensus 108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~-~~~~gd~Viv~~~~h~s-~~~~~~~~a~~~G~~v~~v~~-- 183 (438)
T 1wyu_A 108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLAL-RETGRMGVLVSQGVHPE-YRAVLRAYLEAVGAKLLTLPL-- 183 (438)
T ss_dssp HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHH-HHHTCCEEEEETTSCHH-HHHHHHHHHHHTTCEEEEECC--
T ss_pred HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHH-hcCCCCEEEEcCccCHh-HHHHHHHHHHHCCCEEEEEcC--
Confidence 456788888988885 3345678998995545444332 23566788877666544 332221 23433322211
Q ss_pred CCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEe--ccccC
Q 011959 214 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD--EVMTG 291 (474)
Q Consensus 214 ~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D--Ev~~g 291 (474)
..+. + |+++ +. +++++|+++.+ |++|.+.+ +++|.++|++||+++|+| +...|
T Consensus 184 ~~~~----------~---d~~~----i~---~~t~~v~i~~p-n~tG~~~~----l~~i~~la~~~g~~vivd~d~~a~g 238 (438)
T 1wyu_A 184 EGGR----------T---PLPE----VG---EEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLSLG 238 (438)
T ss_dssp BTTB----------C---CCCC----CC---TTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTGGG
T ss_pred cCCc----------c---CHHH----hC---CCeEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechhhcc
Confidence 1110 0 2222 32 36788888776 88999987 999999999999999955 23222
Q ss_pred cccCCCccccccCCCCceeeh-hhhcC-----CCcceEEEEecHHHHHhhcCCC----------Cc-------------c
Q 011959 292 FRLAYGGAQEYFGVTPDLTTL-GKIIG-----GGLPVGAYGGRRDIMEMVAPAG----------PM-------------Y 342 (474)
Q Consensus 292 ~r~g~~~~~~~~g~~pdi~t~-sK~l~-----~G~~iG~~~~~~~i~~~~~~~~----------~~-------------~ 342 (474)
.. . ....+ ..|++++ +|.|+ +|.++|++++++++++.+.... .. +
T Consensus 239 ~~-~---~~~~~--g~D~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~ 312 (438)
T 1wyu_A 239 VL-K---PPGAY--GADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRR 312 (438)
T ss_dssp TB-C---CHHHH--TCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHG
T ss_pred Cc-C---CCccC--CCCEEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccch
Confidence 20 0 11122 3577765 46543 3568999999998877653210 00 0
Q ss_pred cccCCCC---ChHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHHHhhhcCCeeEEeeeceeEEEEEecCCCcCc
Q 011959 343 QAGTLSG---NPLAMTAGIHTLKRLKE---PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNF 416 (474)
Q Consensus 343 ~~~t~~~---~~~~~aaa~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~~~~~~ 416 (474)
..+|.+. +.++..++...++.+.+ ++..++..++.+++.+.|+++. ++.. ......+..+.+..+
T Consensus 313 ~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~---g~~~-~~~~~~~~~~~~~~~----- 383 (438)
T 1wyu_A 313 AKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVP---GVRP-FTPKPFFNEFALALP----- 383 (438)
T ss_dssp GGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST---TCEE-CSCSSBCSEEEEECS-----
T ss_pred hcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEE-CCCCCeEEEEEEeCC-----
Confidence 1123332 22222222222443332 3445556666666666665430 2211 111122222222211
Q ss_pred ccccccchHHHHHHHHHHHHCCeEe--cccC---CcceEEecC--CcHHHHHHHHHHHHHHH
Q 011959 417 EDAKKSETTKFARFYRGMLEEGVYF--APSQ---FEAGFTSLA--HSSDDIQHTITAAEKVL 471 (474)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~~Gv~v--~~~~---~~~~~~~~~--~t~e~i~~~l~~l~~~~ 471 (474)
....++.+.|.++||.+ .++. ...+|+++. +|++++++++++|++++
T Consensus 384 --------~~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 384 --------KDPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp --------SCHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred --------CCHHHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 01257889999999998 4432 346788765 79999999999998764
No 231
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.54 E-value=9.6e-14 Score=136.50 Aligned_cols=317 Identities=13% Similarity=0.017 Sum_probs=180.1
Q ss_pred CCCCCHHHHHHHHHHHHhc--CCCC----C-----CCHHHHHHHHHHHhhCCC--CCeEEE-eCCHHHHHHHHHHHhHhh
Q 011959 113 IGHADDQVLAALGETMKKG--TSFG----A-----PCLLENVLAEMVISAVPS--IEMVRF-VNSGTEACMGVLRLARAF 178 (474)
Q Consensus 113 lG~~~p~v~~a~~~~~~~~--~~~~----~-----~~~~~~~la~~l~~~~~~--~~~v~~-~~sGseA~~~al~~ar~~ 178 (474)
-+.-+++|++++.+.+.+. ...+ . ..+...+..+.+++.++. .++|+| +.|||++++.+++.....
T Consensus 21 ~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~ 100 (377)
T 3e77_A 21 QSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGL 100 (377)
T ss_dssp SCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGG
T ss_pred cCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCC
Confidence 3446899999999987541 1111 1 123455667777777752 257888 479999999999843211
Q ss_pred cCCcEEEEEeCCCCCCchhHHHhc--CCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEcccc
Q 011959 179 TGRERIIKFEGCYHGHADPFLVKA--GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVV 256 (474)
Q Consensus 179 ~~~~~ii~~~~~yhg~~~~~~~~~--g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~ 256 (474)
..+++++....+.++.. +...+. |..+..++.+...+. +++.++..+. +++++|.+..+.
T Consensus 101 ~~Gd~v~~~~~g~~~~~-~~~~a~~~G~~~~~~~~~~~~~~--------------~~~~~~~~i~---~~t~lV~~~h~e 162 (377)
T 3e77_A 101 KAGRCADYVVTGAWSAK-AAEEAKKFGTINIVHPKLGSYTK--------------IPDPSTWNLN---PDASYVYYCANE 162 (377)
T ss_dssp STTCEEEECCCSHHHHH-HHHHHTTTSEEEECSCCCSSSCS--------------CCCGGGCCCC---TTCSCEEEESEE
T ss_pred CCCCeEEEEECCHHHHH-HHHHHHHhCCceEEeccCCCcCC--------------CCChHHhccC---CCccEEEEeCcc
Confidence 12467776666666532 221111 211111111111111 2333333332 356777777666
Q ss_pred CCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhhcCCCcceEEEEecHHHHHhhc
Q 011959 257 GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVA 336 (474)
Q Consensus 257 ~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~l~~G~~iG~~~~~~~i~~~~~ 336 (474)
+.+|.+.| + +|+++|+++++|-+|+ + .......+.+++ ...+--|.+| .-.+|+++.++++++.+.
T Consensus 163 t~tG~~~p----i-----i~~~~~~~~~vD~~q~-~-g~~~id~~~~~~--~~~s~~K~~g-p~G~g~l~~~~~~l~~~~ 228 (377)
T 3e77_A 163 TVHGVEFD----F-----IPDVKGAVLVCDMSSN-F-LSKPVDVSKFGV--IFAGAQKNVG-SAGVTVVIVRDDLLGFAL 228 (377)
T ss_dssp TTTTEECS----S-----CCCCTTCCEEEECTTT-T-TSSCCCGGGCSE--EEEEGGGTTS-CTTCEEEEEETTSCSCCC
T ss_pred CchheEch----h-----hhccCCCEEEEEcccc-c-CCCCCchhhcCE--EEEecccccC-CCccEEEEEcHHHHhhcc
Confidence 77899998 4 5889999999999996 1 111233334442 3345669996 233889988888765544
Q ss_pred CCCCcc--------cccCCC-CChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHHHhhhcCCee---EEeee
Q 011959 337 PAGPMY--------QAGTLS-GNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQGIIDAGKKAGHAI---CGGYI 400 (474)
Q Consensus 337 ~~~~~~--------~~~t~~-~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~~~---~v~~~ 400 (474)
+..+.+ ...+++ .|..+..+..++|+.+.+. ...++.+++.++++++|.++. ++.. +....
T Consensus 229 ~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~---g~~~~~~~~~~r 305 (377)
T 3e77_A 229 RECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQ---GFYVCPVEPQNR 305 (377)
T ss_dssp TTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTST---TSEECCSCGGGB
T ss_pred CCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcC---CceecCCCHHHc
Confidence 221111 112333 3455566666888877654 344555556666666665431 2211 00112
Q ss_pred -ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC--CcceEEe--cCCcHHHHHHHHHHHHHHHhh
Q 011959 401 -SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ--FEAGFTS--LAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 401 -g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--~~~~~~~--~~~t~e~i~~~l~~l~~~~~~ 473 (474)
+..+.|.+.+.. ++......+.+.+.++||.+.++. ...+|++ ...|++|||.+++.|++++++
T Consensus 306 s~~ivsf~~~~~~---------~~~~~~~~~l~~l~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 306 SKMNIPFRIGNAK---------GDDALEKRFLDKALELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp CSSEEEEEESSTT---------CCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCC---------CchhHHHHHHHHHHHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 223455543210 111222457777889999987762 2357876 455999999999999998864
No 232
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.46 E-value=2e-12 Score=128.67 Aligned_cols=233 Identities=14% Similarity=0.018 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHhhCC--CCCeEEEeCCHH-HHHHHHHHHhHhhcC-CcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCC
Q 011959 139 LLENVLAEMVISAVP--SIEMVRFVNSGT-EACMGVLRLARAFTG-RERIIKFEGCYHGHADPFLVKAGSGVATLGLPDS 214 (474)
Q Consensus 139 ~~~~~la~~l~~~~~--~~~~v~~~~sGs-eA~~~al~~ar~~~~-~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~ 214 (474)
..++.+..++.+.++ .....+++|++| .++.+++..+|.... .+.||+. ..-|-+...++.+.|.+...+.....
T Consensus 98 ~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~-r~aHkSv~kAl~l~Gl~p~~v~~~~~ 176 (450)
T 3bc8_A 98 KITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWP-RIDQKSCFKSMVTAGFEPVVIENVLE 176 (450)
T ss_dssp HHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEE-CCCCHHHHHHHHHTTCEEEEECCEEE
T ss_pred HHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEE-CCcHHHHHHHHHHcCCeeEEEEeeec
Confidence 345566666666553 345568999997 666667776665332 3555555 55898888888888875432211000
Q ss_pred CCCCCCCCCceEEccCCCHHHHHHHHhcCC-CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-
Q 011959 215 PGVPKGATYETLTAPFNDVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF- 292 (474)
Q Consensus 215 ~g~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~- 292 (474)
. +...+ |++.|+++|++++ +.+++|++.|.+..+|.+.+ +++|.++|++||++|++||+|.+.
T Consensus 177 ~--------~~~~i---d~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~ 241 (450)
T 3bc8_A 177 G--------DELRT---DLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQS 241 (450)
T ss_dssp T--------TEEEC---CHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred C--------ccCCc---CHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchhh
Confidence 0 11122 8999999998765 46788888887766667778 999999999999999999999654
Q ss_pred ccCCCccccccCC-CCceee--hhhhcCCCcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHhcC--
Q 011959 293 RLAYGGAQEYFGV-TPDLTT--LGKIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE-- 366 (474)
Q Consensus 293 r~g~~~~~~~~g~-~pdi~t--~sK~l~~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-- 366 (474)
+.......+.+.. ..|.++ .-|.+......+.+.. +++..+.+.. .+.. +-+.+| +.......+....+
T Consensus 242 ~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~---~~~g-~~s~Sp-sL~l~~~l~~~G~~g~ 316 (450)
T 3bc8_A 242 SKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK---MYPG-RASASP-SLDVLITLLSLGCSGY 316 (450)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH---HSCS-CBCSHH-HHHHHHHHHHHHHHHH
T ss_pred hhhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHH---Hhhc-CCcccH-HHHHHHHHHHHHHHHH
Confidence 3221111111111 347664 4588876556677765 5566655542 2211 112233 22222222222111
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcC
Q 011959 367 PGTYEYLNKITGELTQGIIDAGKKAG 392 (474)
Q Consensus 367 ~~~~~~~~~~~~~l~~~L~~~~~~~~ 392 (474)
.+++++..++.+++++.|+++...++
T Consensus 317 ~~~i~~~~~~a~~l~~~l~~~~~~~g 342 (450)
T 3bc8_A 317 RKLLKERKEMFVYLSTQLKKLAEAHN 342 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcC
Confidence 33445557778899999988875555
No 233
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.45 E-value=4.2e-12 Score=124.85 Aligned_cols=289 Identities=12% Similarity=0.056 Sum_probs=169.5
Q ss_pred CCCeEEEeCCHHHHHHHHHHHhHhh--cCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCC
Q 011959 154 SIEMVRFVNSGTEACMGVLRLARAF--TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN 231 (474)
Q Consensus 154 ~~~~v~~~~sGseA~~~al~~ar~~--~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 231 (474)
.....+++|++|.++.+++..+... .+.++||+ ...-|-+...++.+.|..+..+.. ... .+...+
T Consensus 133 ~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIv-pRn~HKSv~kAliL~Gl~Pv~V~p-~~d-------~~~~~i--- 200 (501)
T 3hl2_A 133 TVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIW-PRIDQKSCFKSMITAGFEPVVIEN-VLE-------GDELRT--- 200 (501)
T ss_dssp TCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEE-ECCCCHHHHHHHHHTTCEEEEECE-EEE-------TTEEEE---
T ss_pred CCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEE-ecchHHHHHHHHHHcCCeEEEEee-eec-------ccccCC---
Confidence 3456888888887777766654222 13366665 677888888888888875432211 000 011222
Q ss_pred CHHHHHHHHhcCC-CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCc-ccCCCccccc--cCCCC
Q 011959 232 DVSALENLFENNK-GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY--FGVTP 307 (474)
Q Consensus 232 d~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~-r~g~~~~~~~--~g~~p 307 (474)
|++.+|++|++++ +.+.+|+..+.+..++.+.+ +++|.++|++||++|++||+|... .....+..+. +| ..
T Consensus 201 d~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~G-rA 275 (501)
T 3hl2_A 201 DLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVG-RI 275 (501)
T ss_dssp CHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHS-CC
T ss_pred CHHHHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcC-CC
Confidence 8999999999864 56777777765554455566 999999999999999999999544 3222111122 24 36
Q ss_pred ceeeh--hhhcCCCcceEEEEe-cHHHHHhhcCCCCcccccCCCCChHHHHHHHHHHHHh-cC--CCHHHHHHHHHHHHH
Q 011959 308 DLTTL--GKIIGGGLPVGAYGG-RRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL-KE--PGTYEYLNKITGELT 381 (474)
Q Consensus 308 di~t~--sK~l~~G~~iG~~~~-~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~-~~--~~~~~~~~~~~~~l~ 381 (474)
|+++. -|.+-.-++.+.+.. ++++++.+.. .+- ++.+++|.. ....++..+ .+ .+++++..++.++|+
T Consensus 276 D~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~---~yP-Gr~S~Spsl--dl~~tLL~lGr~Gy~~ll~e~~ela~~L~ 349 (501)
T 3hl2_A 276 DAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISK---MYP-GRASASPSL--DVLITLLSLGSNGYKKLLKERKEMFSYLS 349 (501)
T ss_dssp CEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHH---TSC-SCBCSHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEecccccceeecCceEEEeCCHHHHHHHHH---hCC-CCCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77754 476542122222323 5667776652 221 233333322 223333322 22 677888889999999
Q ss_pred HHHHHHhhhcC-CeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCe---Ee-cccC-----------
Q 011959 382 QGIIDAGKKAG-HAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV---YF-APSQ----------- 445 (474)
Q Consensus 382 ~~L~~~~~~~~-~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv---~v-~~~~----------- 445 (474)
++|+++...++ ...+.+...--+++.+..... ........+...|..++| -+ .++.
T Consensus 350 ~~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~--------~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~ 421 (501)
T 3hl2_A 350 NQIKKLSEAYNERLLHTPHNPISLAMTLKTLDE--------HRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRG 421 (501)
T ss_dssp HHHHHHHHTTTCCBCCCTTCSSEEEEECTTSCT--------TTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESS
T ss_pred HHHHHHHHhcChhhcCCCCCceeEEEecccccc--------cccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecC
Confidence 99999877555 222333333334454432110 111233567777778765 22 2221
Q ss_pred -------CcceEE----ecCCcHHHHHHHHHHHHHHHhh
Q 011959 446 -------FEAGFT----SLAHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 446 -------~~~~~~----~~~~t~e~i~~~l~~l~~~~~~ 473 (474)
++.-++ ...++++|+|.++++|++++.+
T Consensus 422 ~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~ 460 (501)
T 3hl2_A 422 FMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKA 460 (501)
T ss_dssp TTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 111133 3677999999999999999864
No 234
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.44 E-value=3.9e-13 Score=132.89 Aligned_cols=315 Identities=13% Similarity=0.020 Sum_probs=175.1
Q ss_pred CEEEeccCChhhccCCCCCHHHHHHHHHHHHhcC--CC--------C-CCCHHHHHHHHHHHhhCCC--CCeEEE-eCCH
Q 011959 99 NEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SF--------G-APCLLENVLAEMVISAVPS--IEMVRF-VNSG 164 (474)
Q Consensus 99 ~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~--~~--------~-~~~~~~~~la~~l~~~~~~--~~~v~~-~~sG 164 (474)
+.|+|..+. .+ -+|+|++++.+.+.+.. .. + ...+...+..+.+++.++. .++|+| +.||
T Consensus 27 ~~yl~~agp---t~---~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~ 100 (386)
T 3qm2_A 27 QVFNFSSGP---AM---LPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGG 100 (386)
T ss_dssp CCEECCSSS---CC---CCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCT
T ss_pred cCccccCCC---CC---CCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCc
Confidence 357765443 21 48999999987764311 00 0 0122334556666666642 246888 6899
Q ss_pred HHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCC-CCccCCCCCCCCCCCCCCCceEEcc---CC---CHHHHH
Q 011959 165 TEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGS-GVATLGLPDSPGVPKGATYETLTAP---FN---DVSALE 237 (474)
Q Consensus 165 seA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~-~~~~~~~~~~~g~~~~~~~~~~~~~---~~---d~~~le 237 (474)
|++++.+++.. +..+++++....+.++.. +....... .+. .+.++ +. ++++++
T Consensus 101 T~a~n~ai~~l--~~~gd~v~~~~~~~~~~~-~~~~a~~~G~v~-----------------~v~~~~~~~G~~~~~~~~~ 160 (386)
T 3qm2_A 101 RGQFAGVPLNL--LGDKTTADYVDAGYWAAS-AIKEAKKYCAPQ-----------------IIDAKITVDGKRAVKPMRE 160 (386)
T ss_dssp THHHHHHHHHH--CTTCCEEEEEESSHHHHH-HHHHHTTTSEEE-----------------EEECEEEETTEEEECCGGG
T ss_pred hHHHHHHHHhc--cCCCCeEEEEeCCHHHHH-HHHHHHHhCCeE-----------------EEecCcccCCCCCCchHHH
Confidence 99999999842 334567776666665532 22111111 111 11111 11 344455
Q ss_pred HHHhcCCCCeEEEEEccccCCCCcc-cCCHHHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhhc
Q 011959 238 NLFENNKGEIAAIILEPVVGNSGFI-APKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKII 316 (474)
Q Consensus 238 ~~l~~~~~~~a~vi~ep~~~~~G~i-~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~l 316 (474)
+.+. +++++|.+..+.+.+|.+ .| +++|. +|+++++|-+|+ + .......+.+++ ++.+--|.+
T Consensus 161 ~~l~---~~t~lV~~~h~et~tG~~i~p----i~~i~-----~g~~~~vDa~qs-~-g~~pidv~~~~~--~~~s~hK~l 224 (386)
T 3qm2_A 161 WQLS---DNAAYLHYCPNETIDGIAIDE----TPDFG-----PEVVVTADFSST-I-LSAPLDVSRYGV--IYAGAQKNI 224 (386)
T ss_dssp CCCC---TTCSCEEECSEETTTTEECCC----CCCCC-----TTCCEEEECTTT-T-TSSCCCGGGCSE--EEEETTTTT
T ss_pred hhcC---CCCcEEEEECCcCCcCEecCc----hhhhc-----CCCEEEEEcccc-c-CCCCCCccccCE--EEEeccccc
Confidence 4444 367778877777778985 77 44443 899999999995 1 011233333442 445667999
Q ss_pred CCCcceEEEEecHHHHHhhcCCCCcc--------cccCC-CCChHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHH
Q 011959 317 GGGLPVGAYGGRRDIMEMVAPAGPMY--------QAGTL-SGNPLAMTAGIHTLKRLKEP----GTYEYLNKITGELTQG 383 (474)
Q Consensus 317 ~~G~~iG~~~~~~~i~~~~~~~~~~~--------~~~t~-~~~~~~~aaa~aal~~~~~~----~~~~~~~~~~~~l~~~ 383 (474)
| .--+|++++++++.+.+.+..+.+ ....+ +.|..+..+..++|+.+.+. ...++.+++.++++++
T Consensus 225 G-P~G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~ 303 (386)
T 3qm2_A 225 G-PAGLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGV 303 (386)
T ss_dssp C-CTTEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 6 233999999988865544321111 01111 34556666777888876543 3445555556666666
Q ss_pred HHHHhhhcCCee---EEeee-ceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC--cceEEec--CC
Q 011959 384 IIDAGKKAGHAI---CGGYI-SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFTSL--AH 455 (474)
Q Consensus 384 L~~~~~~~~~~~---~v~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~~~~--~~ 455 (474)
|+++ ++.. +.... ...+.|.+.+. ... ..+...|.++||.+..+.. ..+|+++ ..
T Consensus 304 l~~~----~~~~~~~~~~~rs~~iv~f~~~~~------------~~~-~~~~~~L~~~gI~~~~g~~~~~~iRiS~~~~~ 366 (386)
T 3qm2_A 304 IDNS----DFYRNDVAQANRSRMNVPFQLADN------------TLD-KVFLEESFAAGLHALKGHRVVGGMRASIYNAM 366 (386)
T ss_dssp HHTC----SSEECCBCGGGBCSSEEEEEESSG------------GGH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTS
T ss_pred HHHC----CCcccCCCHHHcCceEEEEECCCc------------ccc-HHHHHHHHHCCCEEeCCCCCcCeEEEEcCCCC
Confidence 6543 3211 10111 23344444210 111 4566678899999876522 3578864 45
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 011959 456 SSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 456 t~e~i~~~l~~l~~~~~~ 473 (474)
|++|||++++.|+++.++
T Consensus 367 t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 367 PIEGVKALTDFMIDFERR 384 (386)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 899999999999998764
No 235
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.44 E-value=1.8e-12 Score=126.97 Aligned_cols=303 Identities=12% Similarity=-0.040 Sum_probs=170.5
Q ss_pred CCHHHHHHHHHHHHhc--CCCC----CC-----CHHHHHHHHHHHhhCCC--CCeEEE-eCCHHHHHHHHHHHhHhhcCC
Q 011959 116 ADDQVLAALGETMKKG--TSFG----AP-----CLLENVLAEMVISAVPS--IEMVRF-VNSGTEACMGVLRLARAFTGR 181 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~--~~~~----~~-----~~~~~~la~~l~~~~~~--~~~v~~-~~sGseA~~~al~~ar~~~~~ 181 (474)
-+|+|++++.+.+.+. ...+ .+ .+...+..+.+++.+.. .++|+| ++|||++++.+++.. ..+
T Consensus 16 ~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~---~~~ 92 (361)
T 3m5u_A 16 LPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNL---ALN 92 (361)
T ss_dssp CCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH---CCS
T ss_pred CcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhc---CCC
Confidence 4899999999877531 1111 11 24456667777777752 347888 999999999999843 244
Q ss_pred cEEEEEeCCCCCCchhHH-HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCC
Q 011959 182 ERIIKFEGCYHGHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSG 260 (474)
Q Consensus 182 ~~ii~~~~~yhg~~~~~~-~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G 260 (474)
+++.....+.+++..... ...|..+..++.+....+ . -+++. + |+ +++++|.+..+.+.+|
T Consensus 93 ~~~~~i~~~~~~~~~~~~a~~~G~~v~~~~~~~~g~~---------~---~~~~~-~--l~---~~t~lv~~~~~e~~tG 154 (361)
T 3m5u_A 93 GVCEYANTGVWTKKAIKEAQILGVNVKTVASSEESNF---------D---HIPRV-E--FS---DNADYAYICSNNTIYG 154 (361)
T ss_dssp SCEEEEECSHHHHHHHHHHHHTTCCEEEEEECTTTTS---------C---SCCCC-C--CC---TTSSEEEEESEETTTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHcCCceEEEecccCcCC---------C---cCChh-h--cC---CCCCEEEEeCCCCCcc
Confidence 555333334444321111 112332222111111000 0 02222 2 43 3567777766666678
Q ss_pred cccCCHHHHHHHHHHHHHhCCEEEEeccccCcccCC-CccccccCCCCceee--hhhhcCCCcceEEEEecHHHHHhhcC
Q 011959 261 FIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAY-GGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRRDIMEMVAP 337 (474)
Q Consensus 261 ~i~~~~~~l~~l~~l~~~~g~llI~DEv~~g~r~g~-~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~~~i~~~~~~ 337 (474)
.+.+. +++ +|+++++|-+|+ + |. ....+ ..|+++ --|.+| .-.+|+++.++++.+.+.+
T Consensus 155 ~~~~~---------i~~-~~~~~~vD~~q~-~--g~~~id~~----~~d~~~~s~~K~~g-p~G~g~l~~~~~~~~~~~~ 216 (361)
T 3m5u_A 155 TQYQN---------YPK-TKTPLIVDASSD-F--FSRKVDFS----NIALFYGGVQKNAG-ISGLSCIFIRKDMLERSKN 216 (361)
T ss_dssp EECSS---------CCC-CSSCEEEECGGG-T--TSSCCCCT----TEEEEEEETTTTSS-CTTCEEEEEEHHHHHHHHT
T ss_pred eeCCc---------ccc-cCCEEEEEcccc-c--CCCCCCcc----cCCEEEEechhccC-CCccEEEEEcHHHHhhhcC
Confidence 88662 333 499999999996 1 11 11111 236664 459996 2238999999999877653
Q ss_pred -CCCcc--------cccCC-CCChHHHHHHHHHHHHhcCC-C---HHHHHHHHHHHHHHHHHHHhhhcC-CeeE-E-e-e
Q 011959 338 -AGPMY--------QAGTL-SGNPLAMTAGIHTLKRLKEP-G---TYEYLNKITGELTQGIIDAGKKAG-HAIC-G-G-Y 399 (474)
Q Consensus 338 -~~~~~--------~~~t~-~~~~~~~aaa~aal~~~~~~-~---~~~~~~~~~~~l~~~L~~~~~~~~-~~~~-v-~-~ 399 (474)
..+.+ ...++ +.|..+..+..++|+.+.+. + ..++.+++.++++++|+++ + +... . + .
T Consensus 217 ~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~----~g~~~~~~~~~~ 292 (361)
T 3m5u_A 217 KQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLS----NGFYKGHADKKD 292 (361)
T ss_dssp CCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTS----TTSEEESSCGGG
T ss_pred CCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHC----CCeeeccCCHHH
Confidence 11111 11222 34556666777889887664 2 3445555556666666543 3 2110 0 0 1
Q ss_pred -eceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccCC--cceEEec--CCcHHHHHHHHHHHHHHHhh
Q 011959 400 -ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF--EAGFTSL--AHSSDDIQHTITAAEKVLRQ 473 (474)
Q Consensus 400 -~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--~~~~~~~--~~t~e~i~~~l~~l~~~~~~ 473 (474)
....+.|.+.+. .... ..+...|.++||.+..+.. ..+|+++ ..|++|||++++.|+++.++
T Consensus 293 rs~~ivsf~~~~~-----------~~~~-~~~~~~L~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 293 RSLMNVSFNIAKN-----------KDLE-PLFVKEAEEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp BCSSEEEEEESSC-----------TTHH-HHHHHHHHHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCc-----------hhhh-HHHHHHHHHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 122344444210 0111 3577888899999876622 3578764 45999999999999998764
No 236
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=98.87 E-value=1.2e-07 Score=93.12 Aligned_cols=314 Identities=15% Similarity=0.094 Sum_probs=160.0
Q ss_pred CCHHHHHHHHHHHHhcC--------CCCCC---CHHHHHHHHHHHhhCC-C-CCe-E-EEeCCHHHHHHHHHHHhHhhcC
Q 011959 116 ADDQVLAALGETMKKGT--------SFGAP---CLLENVLAEMVISAVP-S-IEM-V-RFVNSGTEACMGVLRLARAFTG 180 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~--------~~~~~---~~~~~~la~~l~~~~~-~-~~~-v-~~~~sGseA~~~al~~ar~~~~ 180 (474)
..|.|.+|+-..+.+-- .|++. ++.+.-..++..+.|+ . .++ | +=..||+.||.++... .+.+
T Consensus 66 ~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~A--ll~P 143 (490)
T 3ou5_A 66 CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA--LLQP 143 (490)
T ss_dssp CCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH--HCC-
T ss_pred CCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHH--HcCC
Confidence 45777777665554311 11211 2233333345556674 2 221 1 2345899999999983 3345
Q ss_pred CcEEEEEeCCCCCCchhH-------HHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEc
Q 011959 181 RERIIKFEGCYHGHADPF-------LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILE 253 (474)
Q Consensus 181 ~~~ii~~~~~yhg~~~~~-------~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~e 253 (474)
+++|+.++-..-|+.... ...+|......+++ ...+...+ |.+.++++.+++ ++++||+-
T Consensus 144 GD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~--------vd~~t~~I---Dyd~~~~~A~~~--kPklIi~G 210 (490)
T 3ou5_A 144 HDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYK--------LNPKTGLI---DYNQLALTARLF--RPRLIIAG 210 (490)
T ss_dssp CCCEECBC----------------------------CBC--------EETTTTEE---CHHHHHHHHHHH--CCSEEEEC
T ss_pred CCEEEecccCCCCcccccccCCCcccccccccccccccc--------cCCCCCcc---cHHHHHHHHhhc--CCCeEEEC
Confidence 677777754322221111 01111100000000 00000011 899999988876 56777775
Q ss_pred cccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccc-cCc-ccCCCccccccCCCCceee--hhhhcCCCcceEEEEecH
Q 011959 254 PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVM-TGF-RLAYGGAQEYFGVTPDLTT--LGKIIGGGLPVGAYGGRR 329 (474)
Q Consensus 254 p~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DEv~-~g~-r~g~~~~~~~~g~~pdi~t--~sK~l~~G~~iG~~~~~~ 329 (474)
...- -...+ +++++++|++.|++|++|=+| +|+ -.|. +.. -+.. .|++| .-|+|.| -|-|.++.++
T Consensus 211 ~SaY--~r~id----~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~-~ps-P~~~-ADvVTtTTHKTLrG-PrGG~Il~~~ 280 (490)
T 3ou5_A 211 TSAY--ARLID----YARMREVCDEVKAHLLADMAHISGLVAAKV-IPS-PFKH-ADIVTTTTHKTLRG-ARSGLIFYRK 280 (490)
T ss_dssp CSSC--CSCCC----HHHHHHHHHHHTCEEEEECGGGHHHHHTTS-SCC-GGGT-CSEEEEESSSTTCS-CSCEEEEEEC
T ss_pred CccC--ccccC----HHHHHHHHhhcccEEEechhhhhhhhcccc-cCC-cccc-ceEEeccccccccC-CCceEEEecc
Confidence 4221 22345 999999999999999999999 777 3332 111 1222 47775 5699974 4667777665
Q ss_pred ---------------HHHHhhcCCCCcccccCCCCChHHHHHHHH-HHHH-hcC--CCHHHHHHHHHHHHHHHHHHHhhh
Q 011959 330 ---------------DIMEMVAPAGPMYQAGTLSGNPLAMTAGIH-TLKR-LKE--PGTYEYLNKITGELTQGIIDAGKK 390 (474)
Q Consensus 330 ---------------~i~~~~~~~~~~~~~~t~~~~~~~~aaa~a-al~~-~~~--~~~~~~~~~~~~~l~~~L~~~~~~ 390 (474)
++.+.+.. ..+- +..+++-.-..||.+ ++.. +.. .++.+++.++.+.|.+.|.+.+.+
T Consensus 281 ~~~~~~~k~~~~~~~~~~kkin~--aVFP-g~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~ 357 (490)
T 3ou5_A 281 GVKAVDPKTGREIPYTFEDRINF--AVFP-SLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYS 357 (490)
T ss_dssp SEEEECC--CCEEECCCHHHHHH--HHTT-TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred ccccccccccchhHHHHHHHHHh--hcCc-cccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 23334431 1111 122333333333332 2433 322 456777778888888888765322
Q ss_pred cCCeeEEeeeceeEEEEEecCCCcCcccccccchHHHHHHHHHHHHCCeEecccC---------CcceEE------ecCC
Q 011959 391 AGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQ---------FEAGFT------SLAH 455 (474)
Q Consensus 391 ~~~~~~v~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------~~~~~~------~~~~ 455 (474)
++. -.-.-.++.+++.... .......+.|-+.||.+.... ...+|+ ....
T Consensus 358 --vvs-GgTdnHlvLvDl~~~g------------~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~ 422 (490)
T 3ou5_A 358 --LVS-GGTDNHLVLVDLRPKG------------LDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQF 422 (490)
T ss_dssp --EGG-GSCSSSEEEEECGGGT------------CCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTC
T ss_pred --eec-CCCCceEEEEeccccC------------CCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCC
Confidence 110 0011224455543211 112345566667899885321 124676 2567
Q ss_pred cHHHHHHHHHHHHHHHh
Q 011959 456 SSDDIQHTITAAEKVLR 472 (474)
Q Consensus 456 t~e~i~~~l~~l~~~~~ 472 (474)
.++|++++.+.|.+++.
T Consensus 423 ~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 423 REDDFRRVVDFIDEGVN 439 (490)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 89999999998888763
No 237
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=64.62 E-value=11 Score=31.04 Aligned_cols=57 Identities=19% Similarity=0.323 Sum_probs=36.2
Q ss_pred CHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHH-HHHHHhCCE-EEEecccc
Q 011959 232 DVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR-RITKENGAL-LIFDEVMT 290 (474)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~-~l~~~~g~l-lI~DEv~~ 290 (474)
+.+.|.++++++ ++..|+++-+.++.|...+..+..++.. .++.++++. ..+||-++
T Consensus 43 ~~~~l~~li~~~--~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~T 101 (150)
T 1vhx_A 43 GLSRLSELIKDY--TIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLT 101 (150)
T ss_dssp CHHHHHHHHTTS--EEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSC
T ss_pred HHHHHHHHHHHc--CCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCC
Confidence 689999999976 6778888644555455433322223333 445567875 55799886
No 238
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=56.14 E-value=11 Score=32.44 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=30.3
Q ss_pred CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 011959 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 285 (474)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~ 285 (474)
..++||||-..+..|.... +.++.+++++||+.+|.
T Consensus 159 ~Pa~vicEi~~~~dG~mar----~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 159 QPAGVICELVRDEDGLMMR----LDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp CSBEEEEEBBCTTTCCBCB----HHHHHHHHHHHTCCEEE
T ss_pred CceEEEEEEeECCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 5789999977466688888 88899999999998874
No 239
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=51.43 E-value=19 Score=31.07 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=29.6
Q ss_pred CeEEEEEccc-cCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 011959 246 EIAAIILEPV-VGNSGFIAPKPDFLNAIRRITKENGALLIF 285 (474)
Q Consensus 246 ~~a~vi~ep~-~~~~G~i~~~~~~l~~l~~l~~~~g~llI~ 285 (474)
..++||||-+ .+..|.... +.++.+++++||+.+|.
T Consensus 158 ~Pa~vicEiv~~~~dG~mar----~~~l~~fA~~h~l~~it 194 (206)
T 3mio_A 158 QPAGAICEIVSQKDEGSMAH----TDELRVFADEHGLALIT 194 (206)
T ss_dssp CSBEEEEEBBCSSSTTSBCC----HHHHHHHHHHHTCEEEE
T ss_pred CceEEEEEEeeeCCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 5789999983 345677777 88899999999999884
No 240
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=42.98 E-value=29 Score=30.28 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=28.8
Q ss_pred CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 011959 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 285 (474)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~ 285 (474)
..++||||-. +..|.... +.++.+++++||+.+|.
T Consensus 167 ~Pa~vicEi~-~~dG~mar----~~~l~~fA~~h~l~~it 201 (217)
T 1g57_A 167 KPAGVLCELT-NDDGTMAR----APECIEFANKHNMALVT 201 (217)
T ss_dssp CSCEEEEEBB-CTTSSBCC----HHHHHHHHHHTTCEEEE
T ss_pred CceEEEEEEe-CCCCCccC----HHHHHHHHHHcCCCEEE
Confidence 5788998866 45677777 88899999999999884
No 241
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=42.32 E-value=28 Score=30.52 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=29.4
Q ss_pred CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEE
Q 011959 246 EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIF 285 (474)
Q Consensus 246 ~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~ 285 (474)
..++||||=.+ ..|.... +.++.+++++||+.+|.
T Consensus 178 ~Pa~VicEi~~-ddG~mar----~~~l~~fA~~h~l~~it 212 (227)
T 1snn_A 178 VPITTICEMMG-DDGNAMS----KNETKRYAEKHNLIYLS 212 (227)
T ss_dssp CSEEEEEEEBC-TTSSBCC----HHHHHHHHHHHTCCEEE
T ss_pred CceEEEEEEeC-CCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 57899999874 4577888 88899999999999884
No 242
>3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A*
Probab=34.84 E-value=2.1e+02 Score=27.06 Aligned_cols=146 Identities=11% Similarity=0.071 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHhcCC-----CCCCCHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhcCC-cEEEEEeC
Q 011959 117 DDQVLAALGETMKKGTS-----FGAPCLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGR-ERIIKFEG 189 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~~-----~~~~~~~~~~la~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~~~-~~ii~~~~ 189 (474)
++++.+.+.+.++.|.. .+...+...+..+.+.+.+|..-.+.+ .|++.. ...|+++++.+..- -.+..++.
T Consensus 143 ~e~~~~~a~~~~~~Gf~~~KlK~g~~~~~d~~~v~avR~a~g~~~~L~vDaN~~w~-~~~A~~~~~~l~~~~~~l~~iEe 221 (379)
T 3r0u_A 143 VAETIQNIQNGVEANFTAIKVKTGADFNRDIQLLKALDNEFSKNIKFRFDANQGWN-LAQTKQFIEEINKYSLNVEIIEQ 221 (379)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSSCHHHHHHHHHHHHHHCCTTSEEEEECTTCCC-HHHHHHHHHHHHTSCCCEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEeeecCCCHHHHHHHHHHHHHhcCCCCeEEEeCCCCcC-HHHHHHHHHHHhhcCCCcEEEEC
Confidence 44577777776665421 122223445666777777753234444 455554 66788888777652 24666666
Q ss_pred CCCCCchhHH-HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHH
Q 011959 190 CYHGHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 268 (474)
Q Consensus 190 ~yhg~~~~~~-~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (474)
.........+ ..... ...|...+- ...+..+++++++.. ..-.|.+.+.. .|.+..
T Consensus 222 P~~~~d~~~~~~l~~~----~~iPIa~dE-----------~~~~~~~~~~~i~~~--a~d~v~~k~~~--~GGi~~---- 278 (379)
T 3r0u_A 222 PVKYYDIKAMAEITKF----SNIPVVADE-----------SVFDAKDAERVIDEQ--ACNMINIKLAK--TGGILE---- 278 (379)
T ss_dssp CSCTTCHHHHHHHHHH----CSSCEEEST-----------TCSSHHHHHHHHHTT--CCSEEEECHHH--HTSHHH----
T ss_pred CCCcccHHHHHHHHhc----CCCCEEeCC-----------ccCCHHHHHHHHHcC--CCCEEEECccc--cCCHHH----
Confidence 5544322222 11110 001111000 012688888888753 34566666643 244554
Q ss_pred HHHHHHHHHHhCCEEEEe
Q 011959 269 LNAIRRITKENGALLIFD 286 (474)
Q Consensus 269 l~~l~~l~~~~g~llI~D 286 (474)
..++.++|+++|+.+..-
T Consensus 279 ~~~ia~~A~~~gi~~~~~ 296 (379)
T 3r0u_A 279 AQKIKKLADSAGISCMVG 296 (379)
T ss_dssp HHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHcCCEEEEe
Confidence 788999999999998764
No 243
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=33.86 E-value=43 Score=30.38 Aligned_cols=53 Identities=13% Similarity=0.241 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccC---------CHHHHHHHHHHHHHhCCEEEE
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAP---------KPDFLNAIRRITKENGALLIF 285 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~---------~~~~l~~l~~l~~~~g~llI~ 285 (474)
++.+++++++....-+-+|+-|-...+|.... +..+++.|.++|+++++.+|+
T Consensus 39 l~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~a~~~~~~~~~~l~~la~~~~i~iv~ 100 (281)
T 3p8k_A 39 ETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVA 100 (281)
T ss_dssp HHHHHHHHHHHCCTTCCEEECCSSTTTTTCGGGHHHHSEETTHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCCccCCCChhHHHHhhhccCcHHHHHHHHHHhhCCeEEEE
Confidence 45555666542223345677776665665432 356799999999999998774
No 244
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=33.66 E-value=23 Score=25.68 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCCEEEEecccc
Q 011959 269 LNAIRRITKENGALLIFDEVMT 290 (474)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~~ 290 (474)
-.+|++++++||+.++.|.--.
T Consensus 29 A~~I~~~A~e~~VPi~e~~~LA 50 (83)
T 3bzy_B 29 ALQIIKLAELYDIPVIEDIPLA 50 (83)
T ss_dssp HHHHHHHHHHTTCCEEECHHHH
T ss_pred HHHHHHHHHHcCCCEEeCHHHH
Confidence 6789999999999999998653
No 245
>3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP}
Probab=32.67 E-value=2.3e+02 Score=27.00 Aligned_cols=145 Identities=14% Similarity=0.142 Sum_probs=79.5
Q ss_pred CCHHHHHHHHHHHHhcCC-----CCCC---------CHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhc-
Q 011959 116 ADDQVLAALGETMKKGTS-----FGAP---------CLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFT- 179 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~-----~~~~---------~~~~~~la~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~- 179 (474)
.++++.+.+.+.++.|.. .+.. .+...+..+.+.+.+|+. .+++ .|++.. ...|+++++.+.
T Consensus 165 ~~e~~~~~a~~~~~~Gf~~iKlKvg~~~~~~~~~~~~~~di~~v~avR~a~~d~-~L~vDaN~~w~-~~~A~~~~~~L~~ 242 (393)
T 3u9i_A 165 SVTAAARAAQAIVARGVTTIKIKIGAGDPDATTIRTMEHDLARIVAIRDVAPTA-RLILDGNCGYT-APDALRLLDMLGV 242 (393)
T ss_dssp -CHHHHHHHHHHHTTTCCEEEEECC-------CHHHHHHHHHHHHHHHHHSTTS-EEEEECCSCCC-HHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeCCCcccccccccHHHHHHHHHHHHHHCCCC-eEEEEccCCCC-HHHHHHHHHHHhh
Confidence 567777777777765421 1212 112344555666667643 5555 455554 566788777773
Q ss_pred CCcEEEEEeCCCCCC-chhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCC
Q 011959 180 GRERIIKFEGCYHGH-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGN 258 (474)
Q Consensus 180 ~~~~ii~~~~~yhg~-~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~ 258 (474)
.+-.+..++...... ......+.... +.|...+ . ...+..+++++++.. .+-.|.+.+..
T Consensus 243 ~~~~i~~iEeP~~~~d~~~~~~l~~~~----~iPIa~d------E-----~~~~~~~~~~~i~~~--a~d~i~~k~~~-- 303 (393)
T 3u9i_A 243 HGIVPALFEQPVAKDDEEGLRRLTATR----RVPVAAD------E-----SVASATDAARLARNA--AVDVLNIKLMK-- 303 (393)
T ss_dssp TTCCCSEEECCSCTTCTTHHHHHHHTC----SSCEEES------T-----TCCSHHHHHHHHHTT--CCSEEEECHHH--
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHhhC----CCcEEeC------C-----cCCCHHHHHHHHHcC--CCCEEEecccc--
Confidence 233455665554432 22222221110 0111000 0 012688888888753 45677777766
Q ss_pred CCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 011959 259 SGFIAPKPDFLNAIRRITKENGALLIFD 286 (474)
Q Consensus 259 ~G~i~~~~~~l~~l~~l~~~~g~llI~D 286 (474)
|| +.. ..++.++|+++|+.++.-
T Consensus 304 GG-it~----~~~ia~~A~~~gi~~~~~ 326 (393)
T 3u9i_A 304 CG-IVE----ALDIAAIARTAGLHLMIG 326 (393)
T ss_dssp HC-HHH----HHHHHHHHHHHTCEEEEC
T ss_pred cC-HHH----HHHHHHHHHHcCCeEEec
Confidence 44 444 778999999999998764
No 246
>3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779}
Probab=32.36 E-value=2.8e+02 Score=25.99 Aligned_cols=145 Identities=12% Similarity=0.102 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHHHhcCC-----CCCC-CHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhc-CCcEEEEE
Q 011959 116 ADDQVLAALGETMKKGTS-----FGAP-CLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFT-GRERIIKF 187 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~-----~~~~-~~~~~~la~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~-~~~~ii~~ 187 (474)
.++++.+.+.+.++.|.. .+.. .+...+..+.+.+.+|+. .+++ .|++.. ...|+++++.+. .+-.+..+
T Consensus 143 ~~e~~~~~a~~~~~~G~~~iK~Kvg~~~~~~d~~~v~avr~~~~~~-~l~vDaN~~~~-~~~A~~~~~~L~~~~~~i~~i 220 (365)
T 3ik4_A 143 DEVHAAASAKAILARGIKSIKVKTAGVDVAYDLARLRAIHQAAPTA-PLIVDGNCGYD-VERALAFCAACKAESIPMVLF 220 (365)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECCSSCHHHHHHHHHHHHHHSSSC-CEEEECTTCCC-HHHHHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHHHHHhCCCC-eEEEECCCCCC-HHHHHHHHHHHhhCCCCceEE
Confidence 455677777777666421 1222 233455666677777653 4554 455554 556777777772 23456666
Q ss_pred eCCCCCCchhHH-HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCH
Q 011959 188 EGCYHGHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (474)
Q Consensus 188 ~~~yhg~~~~~~-~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (474)
+..........+ .+... ...|...+ . ...+..+++++++.. ..-.|.+.+.. || +..
T Consensus 221 EeP~~~~d~~~~~~l~~~----~~ipIa~d------E-----~~~~~~~~~~~i~~~--a~d~v~ik~~~--GG-it~-- 278 (365)
T 3ik4_A 221 EQPLPREDWAGMAQVTAQ----SGFAVAAD------E-----SARSAHDVLRIAREG--TASVINIKLMK--AG-VAE-- 278 (365)
T ss_dssp ECCSCTTCHHHHHHHHHH----SSSCEEES------T-----TCSSHHHHHHHHHHT--CCSEEEECHHH--HC-HHH--
T ss_pred ECCCCcccHHHHHHHHhh----CCCCEEEC------C-----CCCCHHHHHHHHHhC--CCCEEEEcCCc--cC-HHH--
Confidence 666544322222 21110 00111000 0 012688888888753 45677777765 44 444
Q ss_pred HHHHHHHHHHHHhCCEEEEe
Q 011959 267 DFLNAIRRITKENGALLIFD 286 (474)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~D 286 (474)
..++.++|+++|+.++.=
T Consensus 279 --~~~i~~~A~~~gi~~~~~ 296 (365)
T 3ik4_A 279 --GLKMIAIAQAAGLGLMIG 296 (365)
T ss_dssp --HHHHHHHHHHHTCEEEEC
T ss_pred --HHHHHHHHHHcCCeEEec
Confidence 778999999999988764
No 247
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=31.59 E-value=59 Score=31.10 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhhcC-CCcceEEEEecHHHHHh
Q 011959 267 DFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIMEM 334 (474)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~l~-~G~~iG~~~~~~~i~~~ 334 (474)
+.+++|.++|+++|.-+|+|=.- -.++.+|+.++-+.+=|-+| .|+|+=+-....++...
T Consensus 74 ~~~~~l~~~a~~~g~~vi~DVsp--------~~~~~Lg~s~~dl~~f~~lGi~gLRLD~Gf~~~eia~l 134 (385)
T 1x7f_A 74 AEFKEIINHAKDNNMEVILDVAP--------AVFDQLGISYSDLSFFAELGADGIRLDVGFDGLTEAKM 134 (385)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECT--------TCC------CCCTHHHHHHTCSEEEESSCCSSHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCH--------HHHHHcCCCHHHHHHHHHcCCCEEEEcCCCCHHHHHHH
Confidence 34899999999999999999433 23456777777666667777 57887665556555443
No 248
>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A
Probab=31.44 E-value=1.6e+02 Score=27.71 Aligned_cols=146 Identities=14% Similarity=0.055 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHhcCC-----CCCCCHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhcCCcEEEEEeC
Q 011959 116 ADDQVLAALGETMKKGTS-----FGAPCLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFEG 189 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~-----~~~~~~~~~~la~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~~ 189 (474)
.++++.+.+.+.++.|.. .|...+...+..+.+.+.++..-.+++ .|+|.. .+.|+++++.+.. -.+..++.
T Consensus 140 ~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~d~~~v~avR~~~g~~~~l~vDaN~~~~-~~~A~~~~~~l~~-~~i~~iEq 217 (368)
T 3q45_A 140 EPHKMAADAVQIKKNGFEIIKVKVGGSKELDVERIRMIREAAGDSITLRIDANQGWS-VETAIETLTLLEP-YNIQHCEE 217 (368)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCSCHHHHHHHHHHHHHHHCSSSEEEEECTTCBC-HHHHHHHHHHHGG-GCCSCEEC
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEecCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCC-hHHHHHHHHHHhh-cCCCEEEC
Confidence 345666667676665421 122223344555666666642223333 455554 4567777666644 23444555
Q ss_pred CCCCC-chhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHH
Q 011959 190 CYHGH-ADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 268 (474)
Q Consensus 190 ~yhg~-~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (474)
.++.. .......... ...|...+ . ...+.++++++++.. ..-.|.+.+. ..|.+..
T Consensus 218 P~~~~~~~~~~~l~~~----~~iPIa~d------E-----~~~~~~~~~~~~~~~--~~d~v~~k~~--~~GGit~---- 274 (368)
T 3q45_A 218 PVSRNLYTALPKIRQA----CRIPIMAD------E-----SCCNSFDAERLIQIQ--ACDSFNLKLS--KSAGITN---- 274 (368)
T ss_dssp CBCGGGGGGHHHHHHT----CSSCEEES------T-----TCCSHHHHHHHHHTT--CCSEEEECTT--TTTSHHH----
T ss_pred CCChhHHHHHHHHHhh----CCCCEEEc------C-----CcCCHHHHHHHHHcC--CCCeEEechh--hcCCHHH----
Confidence 44332 1111111110 00110000 0 012688899998853 4556666664 3344555
Q ss_pred HHHHHHHHHHhCCEEEEe
Q 011959 269 LNAIRRITKENGALLIFD 286 (474)
Q Consensus 269 l~~l~~l~~~~g~llI~D 286 (474)
..++.++|+++|+.++.-
T Consensus 275 ~~~i~~~A~~~gi~~~~~ 292 (368)
T 3q45_A 275 ALNIIRLAEQAHMPVQVG 292 (368)
T ss_dssp HHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHHcCCcEEec
Confidence 788999999999988763
No 249
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=30.95 E-value=55 Score=24.46 Aligned_cols=52 Identities=21% Similarity=0.371 Sum_probs=29.1
Q ss_pred CHHHHHHHHhcCCCCeEEEEE-ccccCCCCcccCCH----HHHHHHHHHHHHhCCE-EEEecccc
Q 011959 232 DVSALENLFENNKGEIAAIIL-EPVVGNSGFIAPKP----DFLNAIRRITKENGAL-LIFDEVMT 290 (474)
Q Consensus 232 d~~~le~~l~~~~~~~a~vi~-ep~~~~~G~i~~~~----~~l~~l~~l~~~~g~l-lI~DEv~~ 290 (474)
+++.|+++++++ ++..|++ .|.+ +.|...+.. .|.+.|.+ + ++. ..+||=+|
T Consensus 39 ~~~~l~~li~e~--~v~~iVvGlP~~-mdGt~~~~~~~~~~f~~~L~~---~-~lpV~~~DERlT 96 (98)
T 1iv0_A 39 DVEALLDFVRRE--GLGKLVVGLPLR-TDLKESAQAGKVLPLVEALRA---R-GVEVELWDERFT 96 (98)
T ss_dssp HHHHHHHHHHHH--TCCEEEEECCCC-CCSSSCCCSSTTHHHHHHHHH---T-TCEEEEECCSCC
T ss_pred HHHHHHHHHHHc--CCCEEEEeeccC-CCCCcCHHHHHHHHHHHHHhc---C-CCCEEEECCCCC
Confidence 577888888875 4555555 5544 333333332 33433333 3 665 45888664
No 250
>3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum}
Probab=30.86 E-value=2.3e+02 Score=26.91 Aligned_cols=146 Identities=12% Similarity=0.084 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHhcCC-----CCCC-CHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhc-CCcEEEEE
Q 011959 116 ADDQVLAALGETMKKGTS-----FGAP-CLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFT-GRERIIKF 187 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~-----~~~~-~~~~~~la~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~-~~~~ii~~ 187 (474)
.+.++.+.+.+.++.|.. .+.. .+...+..+.+.+.+|+. .+++ .|++.. ...|+++++.+. .+-++..+
T Consensus 144 ~~e~~~~~a~~~~~~G~~~iKlKvg~~~~~~d~~~v~avR~~~~~~-~L~vDaN~~w~-~~~A~~~~~~L~~~~~~i~~i 221 (389)
T 3s5s_A 144 SPERAEEAARRAAAMGFRALKVKVGGRLAASDPARIEAIHAAAPGA-SLILDGNGGLT-AGEALALVAHARRLGADVALL 221 (389)
T ss_dssp CSHHHHHHHHHHHHHTCCEEEEECCGGGTTTHHHHHHHHHHHCTTC-EEEEECTTCSC-HHHHHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEecCCChHHHHHHHHHHHHhCCCC-eEEEECCCCCC-HHHHHHHHHHHhhCCCCeEEE
Confidence 567788877777776521 1211 223345556677777643 5555 455544 566777777762 33467777
Q ss_pred eCCCCCCchhHH-HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCH
Q 011959 188 EGCYHGHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (474)
Q Consensus 188 ~~~yhg~~~~~~-~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (474)
+..........+ .+... ...|...+ . ...+..+++++++.. ....|.+.+.. || +..
T Consensus 222 EeP~~~~d~~~~~~l~~~----~~iPIa~d------E-----s~~~~~~~~~~i~~~--a~d~v~~k~~~--GG-it~-- 279 (389)
T 3s5s_A 222 EQPVPRDDWDGMKEVTRR----AGVDVAAD------E-----SAASAEDVLRVAAER--AATVVNIKLMK--GG-IAE-- 279 (389)
T ss_dssp ECCSCTTCHHHHHHHHHH----SSSCEEES------T-----TCSSHHHHHHHHHTT--CCSEEEECHHH--HH-HHH--
T ss_pred ECCCCcccHHHHHHHHhh----CCCCEEEC------C-----CCCCHHHHHHHHHcC--CCCEEEecCCC--CC-HHH--
Confidence 766654322222 22111 00111100 0 012688888888753 45667777765 44 444
Q ss_pred HHHHHHHHHHHHhCCEEEEec
Q 011959 267 DFLNAIRRITKENGALLIFDE 287 (474)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DE 287 (474)
..++.++|+++|+.++.--
T Consensus 280 --~~~i~~~A~~~gi~~~~~~ 298 (389)
T 3s5s_A 280 --ALDIAAVARAAGLGLMIGG 298 (389)
T ss_dssp --HHHHHHHHHHTTCEEEECC
T ss_pred --HHHHHHHHHHcCCeEEecC
Confidence 7789999999999987643
No 251
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=30.57 E-value=2.2e+02 Score=26.62 Aligned_cols=146 Identities=14% Similarity=0.059 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHhcCC-----CCCCCHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhcCCcEEEEEeC
Q 011959 116 ADDQVLAALGETMKKGTS-----FGAPCLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFEG 189 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~-----~~~~~~~~~~la~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~~ 189 (474)
.++++.+.+.+.++.+.. .|...+...+..+.+.+.++..-.+.+ .|+|.. .+.|+++++.+.. -.+..++.
T Consensus 139 ~~~~~~~~a~~~~~~G~~~~K~K~g~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~-~~~a~~~~~~L~~-~~i~~iEq 216 (354)
T 3jva_A 139 EPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWT-PKDAVKAIQALAD-YQIELVEQ 216 (354)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTCSC-HHHHHHHHHHTTT-SCEEEEEC
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCC-HHHHHHHHHHHHh-cCCCEEEC
Confidence 345566667666665421 222223445566666666642223444 455553 5667777777654 45666666
Q ss_pred CCCCCchhHH-HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHH
Q 011959 190 CYHGHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDF 268 (474)
Q Consensus 190 ~yhg~~~~~~-~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~ 268 (474)
.+.......+ ..... ...|...+ -...+.++++++++.. ..-.|.+.+.. .|.+..
T Consensus 217 P~~~~d~~~~~~l~~~----~~iPIa~d-----------E~~~~~~~~~~~l~~~--~~d~v~~k~~~--~GGit~---- 273 (354)
T 3jva_A 217 PVKRRDLEGLKYVTSQ----VNTTIMAD-----------ESCFDAQDALELVKKG--TVDVINIKLMK--CGGIHE---- 273 (354)
T ss_dssp CSCTTCHHHHHHHHHH----CSSEEEES-----------TTCCSHHHHHHHHHHT--CCSEEEECHHH--HTSHHH----
T ss_pred CCChhhHHHHHHHHHh----CCCCEEEc-----------CCcCCHHHHHHHHHcC--CCCEEEECchh--cCCHHH----
Confidence 5543322222 11110 00010000 0012688888888753 34566666643 233444
Q ss_pred HHHHHHHHHHhCCEEEEe
Q 011959 269 LNAIRRITKENGALLIFD 286 (474)
Q Consensus 269 l~~l~~l~~~~g~llI~D 286 (474)
..++.++|+++|+.++.-
T Consensus 274 ~~~i~~~A~~~gi~~~~~ 291 (354)
T 3jva_A 274 ALKINQICETAGIECMIG 291 (354)
T ss_dssp HHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHcCCeEEec
Confidence 788999999999998753
No 252
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=29.37 E-value=22 Score=18.68 Aligned_cols=16 Identities=31% Similarity=0.931 Sum_probs=12.7
Q ss_pred EeeccCEEEEcCCCEE
Q 011959 86 DSVKGSHMWDIDGNEY 101 (474)
Q Consensus 86 ~~~~G~~~~d~dG~~~ 101 (474)
.+.+|+++|-+.|.+|
T Consensus 10 ~r~kgarlwyvggtq~ 25 (26)
T 1gff_3 10 GKSKGARLWYVGGTQY 25 (26)
T ss_pred CCCCceEEEEecceec
Confidence 4678999998877665
No 253
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=27.98 E-value=33 Score=25.50 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhCCEEEEecccc
Q 011959 268 FLNAIRRITKENGALLIFDEVMT 290 (474)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~ 290 (474)
.-.+|+++++++|+.++.|.--.
T Consensus 28 ~A~~I~e~A~e~gVPi~e~~~LA 50 (93)
T 2vt1_B 28 CALAVRKYANEVGIPTVRDVKLA 50 (93)
T ss_dssp HHHHHHHHHHHTTCCEEECHHHH
T ss_pred HHHHHHHHHHHcCCCEEECHHHH
Confidence 36789999999999999997653
No 254
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=27.91 E-value=32 Score=25.75 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhCCEEEEecccc
Q 011959 267 DFLNAIRRITKENGALLIFDEVMT 290 (474)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~ 290 (474)
..-++|++++++||+.++.|.--.
T Consensus 42 ~~A~~I~~~A~e~gVPi~e~~~LA 65 (97)
T 3t7y_A 42 LRAKRIIAEAEKYGVPIMRNVPLA 65 (97)
T ss_dssp HHHHHHHHHHHHHTCCEEECHHHH
T ss_pred HHHHHHHHHHHHcCCeEEECHHHH
Confidence 336789999999999999998653
No 255
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A
Probab=27.77 E-value=1.4e+02 Score=27.60 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=31.6
Q ss_pred CHHHHHHHHhcCC-CCeEEEEEccccCCCCcccCC--HHHHHHHHHHHHHhCCEEEEec
Q 011959 232 DVSALENLFENNK-GEIAAIILEPVVGNSGFIAPK--PDFLNAIRRITKENGALLIFDE 287 (474)
Q Consensus 232 d~~~le~~l~~~~-~~~a~vi~ep~~~~~G~i~~~--~~~l~~l~~l~~~~g~llI~DE 287 (474)
+.++++.+.++.+ .-++.-+- +. .+|....+ -+.++++.++|+++|+.+|+|=
T Consensus 70 ~~~~~~~l~~~~G~N~VRi~~~-~~--~~~~~~~~~~~~~ld~~v~~a~~~Gi~VilD~ 125 (327)
T 3pzt_A 70 NKDSLKWLRDDWGITVFRAAMY-TA--DGGYIDNPSVKNKVKEAVEAAKELGIYVIIDW 125 (327)
T ss_dssp SHHHHHHHHHHTCCSEEEEEEE-SS--TTSTTTCGGGHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHhcCCCEEEEEeE-EC--CCCcccCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4566766654422 34555443 21 22333222 2457888899999999999883
No 256
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=27.42 E-value=1e+02 Score=27.06 Aligned_cols=37 Identities=14% Similarity=-0.016 Sum_probs=29.6
Q ss_pred CCeEEEEEccccCC----------CCcccCCHHHHHHHHHHHHHhCCEEEE
Q 011959 245 GEIAAIILEPVVGN----------SGFIAPKPDFLNAIRRITKENGALLIF 285 (474)
Q Consensus 245 ~~~a~vi~ep~~~~----------~G~i~~~~~~l~~l~~l~~~~g~llI~ 285 (474)
-..++||||-.+-. .|.... +.++.+++++||+.+|.
T Consensus 166 l~PagVicEi~~~~~~~~~~~~~~dG~mar----~~~l~~fA~~h~L~iit 212 (233)
T 1k4i_A 166 KRPVAVISEIVDDGQEVEGRAVRAAPGMLR----GDECVAFARRWGLKVCT 212 (233)
T ss_dssp CCSBEEEEEBEECCEECTTSSCEESCEECC----HHHHHHHHHHTTCEEEE
T ss_pred CCceEEEEEeCCCcccccccccCCCCCcCC----HHHHHHHHHHcCCcEEE
Confidence 35789999876431 577887 88899999999999885
No 257
>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}
Probab=27.26 E-value=2.6e+02 Score=26.25 Aligned_cols=144 Identities=12% Similarity=0.068 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHhcC-----CCCCCCHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhcCCcEEEEEeC
Q 011959 116 ADDQVLAALGETMKKGT-----SFGAPCLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFEG 189 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~-----~~~~~~~~~~~la~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~~ 189 (474)
..+++.+++.+..+.+. ..+...+...+..+.+.+..+..-.+.+ .|+|.. .+.++++++.+..+-.+ .++.
T Consensus 146 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~-~~~a~~~~~~l~~~~~i-~iE~ 223 (371)
T 2ps2_A 146 EPEDMRARVAKYRAKGYKGQSVKISGEPVTDAKRITAALANQQPDEFFIVDANGKLS-VETALRLLRLLPHGLDF-ALEA 223 (371)
T ss_dssp CHHHHHHHHHHHHTTTCCEEEEECCSCHHHHHHHHHHHTTTCCTTCEEEEECTTBCC-HHHHHHHHHHSCTTCCC-EEEC
T ss_pred CHHHHHHHHHHHHHhChheEEeecCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCcC-HHHHHHHHHHHHhhcCC-cCcC
Confidence 34556666666655442 1122223334555566565542223433 455543 56677777777233345 6666
Q ss_pred CCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHH
Q 011959 190 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 269 (474)
Q Consensus 190 ~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l 269 (474)
.++ ............ . .|...+ -...+.++++++++.. ..-.|.+.+.. .|.+.. .
T Consensus 224 P~~-~~~~~~~l~~~~--~--iPI~~d-----------E~~~~~~~~~~~i~~~--~~d~v~ik~~~--~GGit~----~ 279 (371)
T 2ps2_A 224 PCA-TWRECISLRRKT--D--IPIIYD-----------ELATNEMSIVKILADD--AAEGIDLKISK--AGGLTR----G 279 (371)
T ss_dssp CBS-SHHHHHHHHTTC--C--SCEEES-----------TTCCSHHHHHHHHHHT--CCSEEEEEHHH--HTSHHH----H
T ss_pred CcC-CHHHHHHHHhhC--C--CCEEeC-----------CCcCCHHHHHHHHHhC--CCCEEEechhh--cCCHHH----H
Confidence 665 333322222210 0 110000 0122688999998864 35567777643 233444 7
Q ss_pred HHHHHHHHHhCCEEEE
Q 011959 270 NAIRRITKENGALLIF 285 (474)
Q Consensus 270 ~~l~~l~~~~g~llI~ 285 (474)
.++.++|+++|+.++.
T Consensus 280 ~~i~~~A~~~g~~~~~ 295 (371)
T 2ps2_A 280 RRQRDICLAAGYSVSV 295 (371)
T ss_dssp HHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHcCCeEEe
Confidence 7899999999998775
No 258
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=27.23 E-value=2.3e+02 Score=26.31 Aligned_cols=45 Identities=7% Similarity=0.118 Sum_probs=27.7
Q ss_pred CCeEEEEEccccCCCC--cccC---------------CHHHHHHHHHHHHHhCCEEE-Eeccc
Q 011959 245 GEIAAIILEPVVGNSG--FIAP---------------KPDFLNAIRRITKENGALLI-FDEVM 289 (474)
Q Consensus 245 ~~~a~vi~ep~~~~~G--~i~~---------------~~~~l~~l~~l~~~~g~llI-~DEv~ 289 (474)
..+..||+++++.... .+.. -..+|.+|..+++++|+.+| ...|+
T Consensus 110 ~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~ 172 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTY 172 (333)
T ss_dssp TCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred cCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCee
Confidence 4689999999886521 0100 01346667778999999755 55554
No 259
>3rcm_A TATD family hydrolase; HET: CIT; 2.05A {Pseudomonas putida}
Probab=27.15 E-value=2e+02 Score=26.08 Aligned_cols=101 Identities=10% Similarity=0.045 Sum_probs=57.2
Q ss_pred CCCeEEEeCCHHHHHHHHHHHhHhhcCCcEEEEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCH
Q 011959 154 SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDV 233 (474)
Q Consensus 154 ~~~~v~~~~sGseA~~~al~~ar~~~~~~~ii~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~ 233 (474)
+.+.++.+.+.-+....++.+++.+.+.+..|...-+.|.+.... ..-.++
T Consensus 30 gV~~~v~~g~~~~~~~~~~~la~~~~~~~~~v~~~~GiHP~~~~~-----------------------------~~~~~~ 80 (287)
T 3rcm_A 30 GVTQMLLTGTSLAVSEQALELCQQLDASGAHLFATAGVHPHDAKA-----------------------------WDTDSE 80 (287)
T ss_dssp TEEEEEECCCSHHHHHHHHHHHHHHCTTSSSEEEEECCCGGGGGG-----------------------------CCTTHH
T ss_pred CCeEEEEecCCHHHHHHHHHHHHhCCCCCceEEEEEEECcCcccc-----------------------------CCHHHH
Confidence 456677777777778888888877754222233333556532100 001147
Q ss_pred HHHHHHHhcCCCCeEEE--E-EccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 011959 234 SALENLFENNKGEIAAI--I-LEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286 (474)
Q Consensus 234 ~~le~~l~~~~~~~a~v--i-~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D 286 (474)
+.|+++++. +++.+| + ++-.... .......+.+++..++|+++|.+|++=
T Consensus 81 ~~l~~l~~~--~~vvaIGEiGLD~~~~~-~~~~~Q~~~F~~ql~lA~e~~lPv~iH 133 (287)
T 3rcm_A 81 RQLRLLLSE--PRVRAVGECGLDFNRDF-SPRPLQEKALEAQLTLAAQLRLPVFLH 133 (287)
T ss_dssp HHHHHHHTS--TTEEEEEEEEEETTTCS-SCHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHhcC--CCeEEEEEeeeCCCccc-CcHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 788887763 244443 1 2322111 111223567888999999999988863
No 260
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A*
Probab=26.96 E-value=1.4e+02 Score=25.86 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=25.9
Q ss_pred eEEEEEccccCC---CCcc-cCCHHHHHHHHHHHHHhCCEEE
Q 011959 247 IAAIILEPVVGN---SGFI-APKPDFLNAIRRITKENGALLI 284 (474)
Q Consensus 247 ~a~vi~ep~~~~---~G~i-~~~~~~l~~l~~l~~~~g~llI 284 (474)
...|++.|...+ .|.+ ....+|-+.++++|+++|+.+|
T Consensus 126 ~~vil~tp~p~~~~~~~~~~~~~~~y~~~~~~vA~~~~v~~i 167 (233)
T 1k7c_A 126 AKVILSSQTPNNPWETGTFVNSPTRFVEYAELAAEVAGVEYV 167 (233)
T ss_dssp CEEEEECCCCCCTTTTSSCCCCCCHHHHHHHHHHHHHTCEEE
T ss_pred CEEEEECCCCccccCCCccccchHHHHHHHHHHHHHhCCeEE
Confidence 466777775432 2332 3445778899999999998766
No 261
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=26.84 E-value=35 Score=25.64 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhCCEEEEecccc
Q 011959 268 FLNAIRRITKENGALLIFDEVMT 290 (474)
Q Consensus 268 ~l~~l~~l~~~~g~llI~DEv~~ 290 (474)
.-.+|++++++||+.++.|.--.
T Consensus 28 ~A~~I~e~A~e~gVPi~e~~~LA 50 (98)
T 3c01_E 28 RALAVRAYAEKVGVPVIVDIKLA 50 (98)
T ss_dssp HHHHHHHHHHHHTCCEEECHHHH
T ss_pred HHHHHHHHHHHcCCCeecCHHHH
Confidence 36789999999999999997653
No 262
>3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A
Probab=26.47 E-value=2.3e+02 Score=26.82 Aligned_cols=145 Identities=14% Similarity=0.081 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHHhcCC-----CCCC---CHH--HHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhcCCcEE
Q 011959 116 ADDQVLAALGETMKKGTS-----FGAP---CLL--ENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERI 184 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~-----~~~~---~~~--~~~la~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~~~~~i 184 (474)
.++++.+.+.+.++.|.. .+.+ ... ..+..+.+.+.++..-.+++ .|++.. ...|+++++.+...-.+
T Consensus 145 ~~e~~~~~a~~~~~~G~~~~K~Kvg~~~~~~~~~~d~~~v~avR~a~G~~~~L~vDaN~~~~-~~~A~~~~~~l~~~~~i 223 (386)
T 3fv9_G 145 TPEAMRAKVARHRAQGFKGHSIKIGASEAEGGPALDAERITACLADRQPGEWYLADANNGLT-VEHALRMLSLLPPGLDI 223 (386)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCCCTTTTHHHHHHHHHHHHTTTCCTTCEEEEECTTCCC-HHHHHHHHHHSCSSCCC
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCCCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCC-HHHHHHHHHHhhccCCc
Confidence 345677777776665421 1211 222 23444455555532223444 565554 56688888777333445
Q ss_pred EEEeCCCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccC
Q 011959 185 IKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAP 264 (474)
Q Consensus 185 i~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~ 264 (474)
.++.... .......+.... ..|...+ . ...+.++++++++.. ....|.+.+.. .|.+..
T Consensus 224 -~iEeP~~-~~~~~~~l~~~~----~iPIa~d------E-----~~~~~~~~~~~~~~~--a~d~v~~k~~~--~GGit~ 282 (386)
T 3fv9_G 224 -VLEAPCA-SWAETKSLRARC----ALPLLLD------E-----LIQTETDLIAAIRDD--LCDGVGLKVSK--QGGITP 282 (386)
T ss_dssp -EEECCCS-SHHHHHHHHTTC----CSCEEES------T-----TCCSHHHHHHHHHTT--CCSEEEEEHHH--HTSHHH
T ss_pred -EEecCCC-CHHHHHHHHhhC----CCCEEeC------C-----CcCCHHHHHHHHHhC--CCCEEEECccc--cCCHHH
Confidence 6666655 332222222110 0111000 0 012688888888753 45566666643 234554
Q ss_pred CHHHHHHHHHHHHHhCCEEEEe
Q 011959 265 KPDFLNAIRRITKENGALLIFD 286 (474)
Q Consensus 265 ~~~~l~~l~~l~~~~g~llI~D 286 (474)
..++.++|+++|+.+.+=
T Consensus 283 ----~~~i~~~A~~~gi~~~~~ 300 (386)
T 3fv9_G 283 ----MLRQRAIAAAAGMVMSVQ 300 (386)
T ss_dssp ----HHHHHHHHHHTTCEEEEE
T ss_pred ----HHHHHHHHHHcCCEEEeC
Confidence 788999999999998743
No 263
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=24.94 E-value=49 Score=29.52 Aligned_cols=53 Identities=13% Similarity=0.277 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccC-------------CHHHHHHHHHHHHHhCCEEEE
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAP-------------KPDFLNAIRRITKENGALLIF 285 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~-------------~~~~l~~l~~l~~~~g~llI~ 285 (474)
++.+++++++....-+-+|+-|-...+|.... +..+++.|.++++++++.+|+
T Consensus 20 ~~~~~~~i~~A~~~gadlvvfPE~~~~gy~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~~~iv~ 85 (262)
T 3ivz_A 20 YSKAEKLIKEASKQGAQLVVLPELFDTGYNFETREEVFEIAQKIPEGETTTFLMDVARDTGVYIVA 85 (262)
T ss_dssp HHHHHHHHHHHHHTTCSEEECCTTTTTCSCCSCHHHHHHHCBCTTTSHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEeCCCcccCCCCCCHHHHHHhcCccCCCHHHHHHHHHHHHcCcEEEE
Confidence 44555555431112244667676655665432 235689999999999998875
No 264
>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05 2, protein structure initiative, midwest center for structu genomics; 2.15A {Enterococcus faecalis}
Probab=23.69 E-value=59 Score=30.93 Aligned_cols=59 Identities=17% Similarity=0.064 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhCCEEEEeccccCcccCCCccccccCCCCceeehhhhcC-CCcceEEEEecHHHHH
Q 011959 267 DFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIG-GGLPVGAYGGRRDIME 333 (474)
Q Consensus 267 ~~l~~l~~l~~~~g~llI~DEv~~g~r~g~~~~~~~~g~~pdi~t~sK~l~-~G~~iG~~~~~~~i~~ 333 (474)
+.+++|.++|+++|.-+|+|=.-. .++++|+.+|-+.+=|-+| .|+|+=+-...+++..
T Consensus 50 ~~~~~l~~~a~~~g~~vi~DIsp~--------~l~~Lg~s~~dl~~~~~lGi~glRLD~Gf~~~eia~ 109 (372)
T 2p0o_A 50 QRLTDLGAIAKAEKMKIMVDISGE--------ALKRAGFSFDELEPLIELGVTGLRMDYGITIEQMAH 109 (372)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECHH--------HHHTTTCBTTBCHHHHHHTCCEEEECSSCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEECCHH--------HHHHcCCCHHHHHHHHHcCCCEEEEcCCCCHHHHHH
Confidence 448899999999999999994332 3466777777777777777 5888766555555544
No 265
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=23.49 E-value=4.6e+02 Score=24.53 Aligned_cols=144 Identities=13% Similarity=0.072 Sum_probs=78.6
Q ss_pred CCHHHHHHHHHHHHhcCC-----CCCCCHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhcCCcEEEEEeC
Q 011959 116 ADDQVLAALGETMKKGTS-----FGAPCLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFEG 189 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~-----~~~~~~~~~~la~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~~ 189 (474)
...++.+++.+..+.+.. .+...+...+..+.+.+..+..-.+.+ .|+|.. .+.++++++.+..- .+ .++.
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~-~~~a~~~~~~l~~~-~i-~iE~ 221 (379)
T 2rdx_A 145 SEAETRAELARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWR-VDNAIRLARATRDL-DY-ILEQ 221 (379)
T ss_dssp CSHHHHHHHHHHHHTTCCEEEEECCSCHHHHHHHHHHHGGGSCTTCEEEEECTTCSC-HHHHHHHHHHTTTS-CC-EEEC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCC-HHHHHHHHHHHHhC-Ce-EEeC
Confidence 466677777777665421 121223345566666666642223333 455543 45667777666543 35 6676
Q ss_pred CCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHH
Q 011959 190 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 269 (474)
Q Consensus 190 ~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l 269 (474)
.+. ...........- ..|...+ -...+.++++++++.. ..-.|.+.+.. .|.+.. .
T Consensus 222 P~~-~~~~~~~l~~~~----~iPI~~d-----------e~i~~~~~~~~~i~~~--~~d~v~ik~~~--~GGit~----~ 277 (379)
T 2rdx_A 222 PCR-SYEECQQVRRVA----DQPMKLD-----------ECVTGLHMAQRIVADR--GAEICCLKISN--LGGLSK----A 277 (379)
T ss_dssp CSS-SHHHHHHHHTTC----CSCEEEC-----------TTCCSHHHHHHHHHHT--CCSEEEEETTT--TTSHHH----H
T ss_pred CcC-CHHHHHHHHhhC----CCCEEEe-----------CCcCCHHHHHHHHHcC--CCCEEEEeccc--cCCHHH----H
Confidence 665 333332222210 0111000 0123788999998854 35566666643 344554 7
Q ss_pred HHHHHHHHHhCCEEEEe
Q 011959 270 NAIRRITKENGALLIFD 286 (474)
Q Consensus 270 ~~l~~l~~~~g~llI~D 286 (474)
.++.++|+++|+.++.=
T Consensus 278 ~~i~~~A~~~g~~~~~~ 294 (379)
T 2rdx_A 278 RRTRDFLIDNRMPVVAE 294 (379)
T ss_dssp HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCeEEEe
Confidence 78999999999987654
No 266
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=23.44 E-value=57 Score=28.97 Aligned_cols=98 Identities=12% Similarity=0.078 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCCCeEEEEE-ccccC---CCCcccCCHHH---HHHHHHHHHHhCCEEEEec-cccCcccCCCccccccC
Q 011959 233 VSALENLFENNKGEIAAIIL-EPVVG---NSGFIAPKPDF---LNAIRRITKENGALLIFDE-VMTGFRLAYGGAQEYFG 304 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~-ep~~~---~~G~i~~~~~~---l~~l~~l~~~~g~llI~DE-v~~g~r~g~~~~~~~~g 304 (474)
++.++++++. .+..|.+ +...+ -.|. .+..++ .++|+++|++||+.||+++ +..-...|-.+ -|++
T Consensus 46 ~~~~~~al~~---Gv~~vqlR~K~~~~~~~~~~-l~~~~~~~~a~~l~~l~~~~~~~liInd~~~lA~~~gAdG--VHLg 119 (243)
T 3o63_A 46 AQFAEAALAG---GVDIIQLRDKGSPGELRFGP-LQARDELAACEILADAAHRYGALFAVNDRADIARAAGADV--LHLG 119 (243)
T ss_dssp HHHHHHHHHT---TCSEEEECCTTCHHHHHHCS-CCHHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHTCSE--EEEC
T ss_pred HHHHHHHHHC---CCCEEEEccCCCCccccccC-CCHHHHHHHHHHHHHHHHhhCCEEEEeCHHHHHHHhCCCE--EEec
Confidence 5677888873 3566666 44311 0010 123333 3678999999999888754 33211222111 1333
Q ss_pred CCC-ceeehhhhcCCCcceEEEEecH-HHHHhhc
Q 011959 305 VTP-DLTTLGKIIGGGLPVGAYGGRR-DIMEMVA 336 (474)
Q Consensus 305 ~~p-di~t~sK~l~~G~~iG~~~~~~-~i~~~~~ 336 (474)
... .....-+.++.+..+|.-+.+. ++.+...
T Consensus 120 ~~dl~~~~~r~~~~~~~~iG~S~ht~~Ea~~A~~ 153 (243)
T 3o63_A 120 QRDLPVNVARQILAPDTLIGRSTHDPDQVAAAAA 153 (243)
T ss_dssp TTSSCHHHHHHHSCTTCEEEEEECSHHHHHHHHH
T ss_pred CCcCCHHHHHHhhCCCCEEEEeCCCHHHHHHHhh
Confidence 221 1112334455566677766554 4444433
No 267
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=23.37 E-value=2e+02 Score=20.34 Aligned_cols=45 Identities=7% Similarity=0.221 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEec
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~DE 287 (474)
.....+.+++. +...||+-..- +++....+..+|+++++.++.-.
T Consensus 16 ~~~v~kai~~g--kaklViiA~D~--------~~~~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 16 TKQTVKALKRG--SVKEVVVAKDA--------DPILTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHHHTTT--CEEEEEEETTS--------CHHHHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHcC--CeeEEEEeCCC--------CHHHHHHHHHHHHHcCCCEEEEC
Confidence 45566677643 56666664421 22568899999999999988654
No 268
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=22.94 E-value=2.4e+02 Score=22.91 Aligned_cols=47 Identities=9% Similarity=0.099 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHCCeEecccCCcceEEecCCcHHHHHHHHHHHHHHH
Q 011959 425 TKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVL 471 (474)
Q Consensus 425 ~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~t~e~i~~~l~~l~~~~ 471 (474)
....++.+.|.++||-+.-.......+++...+++.++++++|.+.+
T Consensus 110 Gv~a~~f~aL~~~~InI~~is~Se~~is~vv~~~d~~~Av~~Lh~~f 156 (167)
T 2dt9_A 110 EVPAKMFQAVASTGANIEMIATSEVRISVIIPAEYAEAALRAVHQAF 156 (167)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHCCCCEEEEEccCCEEEEEEeHHHHHHHHHHHHHHH
Confidence 34567888899998755322222346777888999999999988764
No 269
>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B
Probab=22.66 E-value=4.2e+02 Score=24.79 Aligned_cols=142 Identities=16% Similarity=0.139 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHhcC-----CCCCCC-HHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhcCCcEEEEEeC
Q 011959 117 DDQVLAALGETMKKGT-----SFGAPC-LLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFEG 189 (474)
Q Consensus 117 ~p~v~~a~~~~~~~~~-----~~~~~~-~~~~~la~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~~ 189 (474)
.+++.+++.+..+.+. ..+.++ +...+..+.+.+..+..-.+.+ .|+|.. .+.++++++.+. -.+ .++.
T Consensus 146 ~e~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~-~~~a~~~~~~l~--~~i-~iEq 221 (378)
T 2qdd_A 146 PDQMLGLIAEAAAQGYRTHSAKIGGSDPAQDIARIEAISAGLPDGHRVTFDVNRAWT-PAIAVEVLNSVR--ARD-WIEQ 221 (378)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCSSCHHHHHHHHHHHHHSCCTTCEEEEECTTCCC-HHHHHHHHTSCC--CCC-EEEC
T ss_pred HHHHHHHHHHHHHHhhhheeecCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCCC-HHHHHHHHHHhC--CCc-EEEc
Confidence 4456666666666542 112212 3345666666666642223333 455544 466778777775 456 6777
Q ss_pred CCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHH
Q 011959 190 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 269 (474)
Q Consensus 190 ~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l 269 (474)
.+. ............ . .|...+ -...+.+++++++++. ..-.|.+.+.. .|.+.. .
T Consensus 222 P~~-d~~~~~~l~~~~--~--iPI~~d-----------E~~~~~~~~~~~i~~~--~~d~v~ik~~~--~GGi~~----~ 277 (378)
T 2qdd_A 222 PCQ-TLDQCAHVARRV--A--NPIMLD-----------ECLHEFSDHLAAWSRG--ACEGVKIKPNR--VGGLTR----A 277 (378)
T ss_dssp CSS-SHHHHHHHHTTC--C--SCEEEC-----------TTCCSHHHHHHHHHHT--CCSEEEECHHH--HTSHHH----H
T ss_pred CCC-CHHHHHHHHHhC--C--CCEEEC-----------CCcCCHHHHHHHHHhC--CCCEEEecccc--cCCHHH----H
Confidence 665 333332222210 0 110000 0122688899988753 45567777643 233444 7
Q ss_pred HHHHHHHHHhCCEEEEe
Q 011959 270 NAIRRITKENGALLIFD 286 (474)
Q Consensus 270 ~~l~~l~~~~g~llI~D 286 (474)
.++.++|+++|+.++.=
T Consensus 278 ~~i~~~A~~~g~~~~~~ 294 (378)
T 2qdd_A 278 RQIRDFGVSVGWQMHIE 294 (378)
T ss_dssp HHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHHHcCCeEEec
Confidence 78999999999987764
No 270
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=21.66 E-value=3.4e+02 Score=25.61 Aligned_cols=142 Identities=14% Similarity=0.090 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHHHHh-cCC-----CCC-CCHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhcCCcEEEEE
Q 011959 116 ADDQVLAALGETMKK-GTS-----FGA-PCLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKF 187 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~-~~~-----~~~-~~~~~~~la~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~ 187 (474)
.++++.+.+.+.++. |.. .|. ..+...+..+.+.+.+|..-.+.+ .|+|.. .+.|+++++.+..-+ +..+
T Consensus 148 ~~~~~~~~a~~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~-~~~A~~~~~~l~~~~-i~~i 225 (383)
T 3i4k_A 148 PLDVAVAEIEERIEEFGNRSFKLKMGAGDPAEDTRRVAELAREVGDRVSLRIDINARWD-RRTALHYLPILAEAG-VELF 225 (383)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCSSCHHHHHHHHHHHHHTTTTTSEEEEECTTCSC-HHHHHHHHHHHHHTT-CCEE
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEeeCCCCHHHHHHHHHHHHHHcCCCCEEEEECCCCCC-HHHHHHHHHHHHhcC-CCEE
Confidence 455667777776665 521 122 223345566677777753223443 465554 566777766664433 4455
Q ss_pred eCCCCCCchhHH-Hhc---CCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCccc
Q 011959 188 EGCYHGHADPFL-VKA---GSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIA 263 (474)
Q Consensus 188 ~~~yhg~~~~~~-~~~---g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~ 263 (474)
+..+.......+ ... +.++.. ... ..+.++++++++.. ..-.|.+.+. ..|.+.
T Consensus 226 EqP~~~~d~~~~~~l~~~~~iPIa~-----dE~-------------~~~~~~~~~~i~~~--~~d~v~~k~~--~~GGit 283 (383)
T 3i4k_A 226 EQPTPADDLETLREITRRTNVSVMA-----DES-------------VWTPAEALAVVKAQ--AADVIALKTT--KHGGLL 283 (383)
T ss_dssp ESCSCTTCHHHHHHHHHHHCCEEEE-----STT-------------CSSHHHHHHHHHHT--CCSEEEECTT--TTTSHH
T ss_pred ECCCChhhHHHHHHHHhhCCCCEEe-----cCc-------------cCCHHHHHHHHHcC--CCCEEEEccc--ccCCHH
Confidence 555543222112 111 111100 000 12688888888753 3456666663 334455
Q ss_pred CCHHHHHHHHHHHHHhCCEEEE
Q 011959 264 PKPDFLNAIRRITKENGALLIF 285 (474)
Q Consensus 264 ~~~~~l~~l~~l~~~~g~llI~ 285 (474)
. ..++.++|+++|+.++.
T Consensus 284 ~----~~~ia~~A~~~gi~~~~ 301 (383)
T 3i4k_A 284 E----SKKIAAIAEAGGLACHG 301 (383)
T ss_dssp H----HHHHHHHHHHTTCEEEE
T ss_pred H----HHHHHHHHHHcCCeEEe
Confidence 5 88899999999998764
No 271
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=21.36 E-value=1.5e+02 Score=22.83 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEe
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l~~l~~l~~~~g~llI~D 286 (474)
.....+.++.. +..+||+-..- ++.++...|..+|+++++.++.-
T Consensus 25 ~~~v~kai~~g--kakLViiA~D~-------~~~~~~~~l~~lc~~~~VP~~~v 69 (121)
T 2lbw_A 25 VKEVVKALRKG--EKGLVVIAGDI-------WPADVISHIPVLCEDHSVPYIFI 69 (121)
T ss_dssp HHHHHHHHHHS--CCCEEEECTTC-------SCTTHHHHHHHHHHHTCCCEEEC
T ss_pred HHHHHHHHHcC--CceEEEEeCCC-------CHHHHHHHHHHHHHhcCCcEEEE
Confidence 45566667653 55666665432 23344778999999999988753
No 272
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=20.95 E-value=1.3e+02 Score=26.69 Aligned_cols=52 Identities=19% Similarity=0.134 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCCeEEEEEccccCCCCccc--------CCHHHHHHHHHHHHHhCCEEEE
Q 011959 233 VSALENLFENNKGEIAAIILEPVVGNSGFIA--------PKPDFLNAIRRITKENGALLIF 285 (474)
Q Consensus 233 ~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~--------~~~~~l~~l~~l~~~~g~llI~ 285 (474)
++.+++++++. ..-+-+|+-|-...+|... ....+++.|.++++++++.+|+
T Consensus 22 ~~~~~~~i~~a-~~gadlvv~PE~~~~gy~~~~~~~a~~~~~~~~~~l~~~a~~~~~~iv~ 81 (266)
T 2e11_A 22 RDYYGALLEPL-AGQSDLVILPETFTSGFSNEAIDKAEDMDGPTVAWIRTQAARLGAAITG 81 (266)
T ss_dssp HHHHHHHHGGG-TTTCSEEECCTTTTTCSCSGGGGGCEETTSHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHh-cCCCCEEECCCCccccCChhHHHhhccCCCHHHHHHHHHHHHhCCEEEE
Confidence 55666666543 2224467767655555421 1235689999999999998874
No 273
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=20.86 E-value=1.7e+02 Score=26.77 Aligned_cols=52 Identities=10% Similarity=0.090 Sum_probs=32.6
Q ss_pred CHHHHHHHH----hcCCCCeE--EEEEccccCCCCccc-CC-----HHHHHHHHHHHHHhCCEEEE
Q 011959 232 DVSALENLF----ENNKGEIA--AIILEPVVGNSGFIA-PK-----PDFLNAIRRITKENGALLIF 285 (474)
Q Consensus 232 d~~~le~~l----~~~~~~~a--~vi~ep~~~~~G~i~-~~-----~~~l~~l~~l~~~~g~llI~ 285 (474)
+++++.+.+ +++ .+. .||+++.+.....-. .. .+++..|..+|+++|+.+|+
T Consensus 163 ~~~~i~~~i~~l~~~~--~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~ 226 (315)
T 3bh0_A 163 SVNYIWSKTRQTKRKN--PGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIA 226 (315)
T ss_dssp BHHHHHHHHHHHHHTS--SSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CHHHHHHHHHHHHHhc--CCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 566654443 333 356 999999876532111 11 24567888999999997664
No 274
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=20.48 E-value=4.8e+02 Score=24.38 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHh-cCC-----CCCCC-HHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhcCCcEEEEE
Q 011959 116 ADDQVLAALGETMKK-GTS-----FGAPC-LLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKF 187 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~-~~~-----~~~~~-~~~~~la~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~ 187 (474)
.++++.+.+.+.++. |.. .+... +...+..+.+.+.++..-.+.+ .|+|.. .+.|+++++.+.. -.+..+
T Consensus 151 ~~~~~~~~a~~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~-~~~a~~~~~~l~~-~~i~~i 228 (372)
T 3tj4_A 151 TLEDLLAGSARAVEEDGFTRLKIKVGHDDPNIDIARLTAVRERVDSAVRIAIDGNGKWD-LPTCQRFCAAAKD-LDIYWF 228 (372)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEEECCCSSHHHHHHHHHHHHHHSCTTCEEEEECTTCCC-HHHHHHHHHHTTT-SCEEEE
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCCCHHHHHHHHHHHHHHcCCCCcEEeeCCCCCC-HHHHHHHHHHHhh-cCCCEE
Confidence 566777777777766 521 12222 3345566667777742223333 465555 5667777776644 356666
Q ss_pred eCCCCCCchhHHH-hcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCH
Q 011959 188 EGCYHGHADPFLV-KAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKP 266 (474)
Q Consensus 188 ~~~yhg~~~~~~~-~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~ 266 (474)
+..++......+. .... ...|...+ -...+.++++++++.. ..-.|.+.+ +..|.+..
T Consensus 229 EqP~~~~d~~~~~~l~~~----~~iPIa~d-----------E~~~~~~~~~~~i~~~--~~d~v~~k~--~~~GGit~-- 287 (372)
T 3tj4_A 229 EEPLWYDDVTSHARLARN----TSIPIALG-----------EQLYTVDAFRSFIDAG--AVAYVQPDV--TRLGGITE-- 287 (372)
T ss_dssp ESCSCTTCHHHHHHHHHH----CSSCEEEC-----------TTCCSHHHHHHHHHTT--CCSEECCCT--TTTTHHHH--
T ss_pred ECCCCchhHHHHHHHHhh----cCCCEEeC-----------CCccCHHHHHHHHHcC--CCCEEEeCc--cccCCHHH--
Confidence 6665543222221 1110 00111000 0012688888888753 233444443 44455655
Q ss_pred HHHHHHHHHHHHhCCEEE
Q 011959 267 DFLNAIRRITKENGALLI 284 (474)
Q Consensus 267 ~~l~~l~~l~~~~g~llI 284 (474)
..++.++|+++|+.+.
T Consensus 288 --~~~ia~~A~~~gi~~~ 303 (372)
T 3tj4_A 288 --YIQVADLALAHRLPVV 303 (372)
T ss_dssp --HHHHHHHHHHTTCCBC
T ss_pred --HHHHHHHHHHcCCEEE
Confidence 8889999999998654
No 275
>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi}
Probab=20.19 E-value=2.8e+02 Score=26.13 Aligned_cols=144 Identities=15% Similarity=0.095 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHHhcCC-----CCCCCHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhcCCcEEEEEeC
Q 011959 116 ADDQVLAALGETMKKGTS-----FGAPCLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIKFEG 189 (474)
Q Consensus 116 ~~p~v~~a~~~~~~~~~~-----~~~~~~~~~~la~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~~~~~ii~~~~ 189 (474)
.++++.+.+.+..+.|.. .+...+...+..+.+.+.++..-.+.+ .|+|.. .+.|+++++.+.+-+ + .++.
T Consensus 145 ~~e~~~~~a~~~~~~G~~~iKiK~G~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~-~~~a~~~~~~l~~~~-i-~iEq 221 (378)
T 3eez_A 145 SVEETRAVIDRYRQRGYVAHSVKIGGDVERDIARIRDVEDIREPGEIVLYDVNRGWT-RQQALRVMRATEDLH-V-MFEQ 221 (378)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCSCHHHHHHHHHHHTTSCCTTCEEEEECTTCCC-HHHHHHHHHHTGGGT-C-CEEC
T ss_pred CHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHHcCCCceEEEECCCCCC-HHHHHHHHHHhccCC-e-EEec
Confidence 445566666666665421 222222334555556666642223333 455554 456777776665433 4 5566
Q ss_pred CCCCCchhHHHhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHH
Q 011959 190 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFL 269 (474)
Q Consensus 190 ~yhg~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~~~~l 269 (474)
.+. ........... ...|...+ -...+.++++++++.. ..-.|.+.+.. .|.+.. .
T Consensus 222 P~~-~~~~~~~l~~~----~~iPIa~d-----------E~~~~~~~~~~~l~~~--~~d~v~ik~~~--~GGit~----~ 277 (378)
T 3eez_A 222 PGE-TLDDIAAIRPL----HSAPVSVD-----------ECLVTLQDAARVARDG--LAEVFGIKLNR--VGGLTR----A 277 (378)
T ss_dssp CSS-SHHHHHHTGGG----CCCCEEEC-----------TTCCSHHHHHHHHHTT--CCSEEEEEHHH--HTSHHH----H
T ss_pred CCC-CHHHHHHHHhh----CCCCEEEC-----------CCCCCHHHHHHHHHcC--CCCEEEeCchh--cCCHHH----H
Confidence 655 22222111111 00111000 0122688899998853 34566666643 233544 7
Q ss_pred HHHHHHHHHhCCEEEEe
Q 011959 270 NAIRRITKENGALLIFD 286 (474)
Q Consensus 270 ~~l~~l~~~~g~llI~D 286 (474)
.++.++|+++|+.+..=
T Consensus 278 ~~ia~~A~~~g~~~~~~ 294 (378)
T 3eez_A 278 ARMRDIALTHGIDMFVM 294 (378)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCEEEcC
Confidence 88999999999988753
No 276
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=20.17 E-value=69 Score=17.07 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=11.8
Q ss_pred cCEEEEcCCCEEEec
Q 011959 90 GSHMWDIDGNEYIDY 104 (474)
Q Consensus 90 G~~~~d~dG~~~iD~ 104 (474)
-+.+||.+|+.+-.+
T Consensus 6 ss~IYD~~g~~i~~l 20 (26)
T 2v2f_A 6 SSKIYDNKNQLIADL 20 (26)
T ss_pred CCEEEeCCCCEeeec
Confidence 467899999887665
No 277
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}
Probab=20.09 E-value=61 Score=29.44 Aligned_cols=21 Identities=10% Similarity=-0.023 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCEEEEeccc
Q 011959 269 LNAIRRITKENGALLIFDEVM 289 (474)
Q Consensus 269 l~~l~~l~~~~g~llI~DEv~ 289 (474)
++.+.++|+++|+.||+|--.
T Consensus 92 ~d~~~~~a~~~Gi~vil~~~~ 112 (351)
T 3vup_A 92 MKDLLDTAKKYNILVFPCLWN 112 (351)
T ss_dssp HHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEecc
Confidence 678899999999999988643
No 278
>4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens}
Probab=20.01 E-value=1.6e+02 Score=28.57 Aligned_cols=150 Identities=10% Similarity=0.098 Sum_probs=73.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCC-----CCCCCHHHHHHHHHHHhhCCCCCeEEE-eCCHHHHHHHHHHHhHhhcCCcEEEE
Q 011959 113 IGHADDQVLAALGETMKKGTS-----FGAPCLLENVLAEMVISAVPSIEMVRF-VNSGTEACMGVLRLARAFTGRERIIK 186 (474)
Q Consensus 113 lG~~~p~v~~a~~~~~~~~~~-----~~~~~~~~~~la~~l~~~~~~~~~v~~-~~sGseA~~~al~~ar~~~~~~~ii~ 186 (474)
+|..++++.+.+.+.++.|.. .|...+...+..+.+.+.++..-.+++ .|++.. ...|+++++.+.+ -.+..
T Consensus 198 ~~~~~e~~~~~a~~~~~~Gf~~~KlKvG~~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~-~~~A~~~~~~L~~-~~~~~ 275 (441)
T 4a35_A 198 LGYSDDTLKQLCAQALKDGWTRFKVKVGADLQDDMRRCQIIRDMIGPEKTLMMDANQRWD-VPEAVEWMSKLAK-FKPLW 275 (441)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCEEEEECSSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCC-HHHHHHHHHHHGG-GCCSE
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCC-HHHHHHHHHhhcc-cCccE
Confidence 455667777777777766421 122222233444455555532224444 455443 4557777766643 23445
Q ss_pred EeCCCCCCchhHH-HhcCCCCccCCCCCCCCCCCCCCCceEEccCCCHHHHHHHHhcCCCCeEEEEEccccCCCCcccCC
Q 011959 187 FEGCYHGHADPFL-VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPK 265 (474)
Q Consensus 187 ~~~~yhg~~~~~~-~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~G~i~~~ 265 (474)
++..........+ .+... ......|...+- ...+..+++++++.. .+-.|.+.+ +..|.+..
T Consensus 276 iEeP~~~~d~~~~~~l~~~-l~~~~iPIa~gE-----------~~~~~~~~~~~l~~~--a~div~~d~--~~~GGit~- 338 (441)
T 4a35_A 276 IEEPTSPDDILGHATISKA-LVPLGIGIATGE-----------QCHNRVIFKQLLQAK--ALQFLQIDS--CRLGSVNE- 338 (441)
T ss_dssp EECCSCTTCHHHHHHHHHH-HGGGTCEEEECT-----------TCCSHHHHHHHHHTT--CCSEECCCT--TTSSHHHH-
T ss_pred EeCCCCcccHHHHHHHHHh-ccCCCCCEEeCC-----------ccccHHHHHHHHHcC--CCCEEEECc--cccCCHHH-
Confidence 5555443221111 11100 000001100000 012678888888743 233333333 44455655
Q ss_pred HHHHHHHHHHHHHhCCEEE
Q 011959 266 PDFLNAIRRITKENGALLI 284 (474)
Q Consensus 266 ~~~l~~l~~l~~~~g~llI 284 (474)
..+|.++|++||+.+.
T Consensus 339 ---~~kia~lA~~~gv~v~ 354 (441)
T 4a35_A 339 ---NLSVLLMAKKFEIPVC 354 (441)
T ss_dssp ---HHHHHHHHHHTTCCBC
T ss_pred ---HHHHHHHHHHcCCEEE
Confidence 7889999999999764
Done!