RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 011959
(474 letters)
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 812 bits (2099), Expect = 0.0
Identities = 306/427 (71%), Positives = 359/427 (84%)
Query: 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGS 107
F KS+E F A++LMPGGV+SPVRAFKSVGGQPIVFD VK ++ WD+DGN YIDYVG+
Sbjct: 1 FKTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGT 60
Query: 108 WGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEA 167
WGPAI GHA +V+ AL M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEA
Sbjct: 61 WGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEA 120
Query: 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT 227
CM VLR+ RA+TGR++IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT
Sbjct: 121 CMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLT 180
Query: 228 APFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287
P+ND+ A++ LF N GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDE
Sbjct: 181 TPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDE 240
Query: 288 VMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 347
V+TGFR+AYGG QE FGVTPDLTTLGKIIGGGLPVGAYGG+R+IM++VAPAGPMYQAGTL
Sbjct: 241 VITGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTL 300
Query: 348 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407
SGNPLAMTAGI TL+ L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFF
Sbjct: 301 SGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFF 360
Query: 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAA 467
FTEGPV+N+EDAKKS+ KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA
Sbjct: 361 FTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAA 420
Query: 468 EKVLRQI 474
V+ +
Sbjct: 421 RTVMSAL 427
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 807 bits (2088), Expect = 0.0
Identities = 226/429 (52%), Positives = 297/429 (69%), Gaps = 1/429 (0%)
Query: 47 NFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVG 106
+ + KSE + A++L+PGGVNSPVRAF VGG P+ + G++++D+DG YIDYVG
Sbjct: 1 SNAMSKSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVG 60
Query: 107 SWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTE 166
SWGP I+GH + A+ E +++G SFGAP +E +A++V VP+++MVR VNSGTE
Sbjct: 61 SWGPMILGHNHPAIRQAVIEAVERGLSFGAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTE 120
Query: 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETL 226
A M +RLAR +TGR++IIKFEGCYHGHAD LVKAGSG TLG P+SPGVP TL
Sbjct: 121 ATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTL 180
Query: 227 TAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFD 286
T +ND++++ FE E+A II+EPV GN I P P+FL +R + E GALLI D
Sbjct: 181 TCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIID 240
Query: 287 EVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGT 346
EVMTGFR+A GAQ+Y+ V PDLT LGKIIGGG+PVGA+GGRR++M +AP GP+YQAGT
Sbjct: 241 EVMTGFRVALAGAQDYYHVIPDLTCLGKIIGGGMPVGAFGGRREVMNALAPTGPVYQAGT 300
Query: 347 LSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGF 406
LSGNP+AM AG L + + G YE L ++T L G+ A K+ + ++ GMFG
Sbjct: 301 LSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVNHVGGMFGL 360
Query: 407 FFTEG-PVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTIT 465
FFT V ++D + +F RF+ MLEEGVY APS FEAGF SLAHS++DIQ T+
Sbjct: 361 FFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAFEAGFMSLAHSNEDIQKTVN 420
Query: 466 AAEKVLRQI 474
AA + ++
Sbjct: 421 AARRCFAKL 429
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 805 bits (2083), Expect = 0.0
Identities = 201/426 (47%), Positives = 285/426 (66%), Gaps = 1/426 (0%)
Query: 50 LKKSEEAFNVAKELMPGGVNSPVRAFKSVGG-QPIVFDSVKGSHMWDIDGNEYIDYVGSW 108
KSE A E + GGVNSP R+FK+VGG PI + KG++ WD+DGN+YIDY+ ++
Sbjct: 5 FTKSEALHKEALEHIVGGVNSPSRSFKAVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAY 64
Query: 109 GPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168
GP I GHA + A+ + G +G P LE A+M+ A+P+++ VRFVNSGTEA
Sbjct: 65 GPIITGHAHPHITKAITTAAENGVLYGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAV 124
Query: 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA 228
M +R+ARA+TGR +I+KF GCYHGH+D LV AGSG +TLG PDS GVP+ E +T
Sbjct: 125 MTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITV 184
Query: 229 PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288
PFN+V L+ + E+AAI++EP+VGN G + PKP FL + + E GAL+I+DEV
Sbjct: 185 PFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEV 244
Query: 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLS 348
+T FR YGGAQ+ GVTPDLT LGK+IGGGLP+GAYGG+++IME VAP GP YQAGT++
Sbjct: 245 ITAFRFMYGGAQDLLGVTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGPAYQAGTMA 304
Query: 349 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 408
GNP +M +GI L+ L++ G YE L+++ L +GI++ K I + G +F
Sbjct: 305 GNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDITLNRLKGALTVYF 364
Query: 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAE 468
T + +++ A+ ++ F +F++ ML+EGV APS++EA F + H+ +DI++TI A
Sbjct: 365 TTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKYEAWFLTTEHTKEDIEYTIEAVG 424
Query: 469 KVLRQI 474
+ +
Sbjct: 425 RAFAAL 430
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 803 bits (2077), Expect = 0.0
Identities = 244/426 (57%), Positives = 302/426 (70%), Gaps = 1/426 (0%)
Query: 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSW 108
KS AF A++LMPGGVNSPVRAFKSVG P+ + KGS ++DIDGNEYIDYV SW
Sbjct: 3 KFDKSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSW 62
Query: 109 GPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168
GP I GHA+D+V+ AL ++GTSFGAP +EN LA++VI VPSIE+VR VNSGTEA
Sbjct: 63 GPLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEAT 122
Query: 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA 228
M LRLAR +TGR +I+KF GCYHGH D L+KAGSGVATLGLPDSPGVP+G T+T
Sbjct: 123 MSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITV 182
Query: 229 PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288
+ND+ +++ FE +IA +I+EPV GN G + P+P FL +R +T++NGALLIFDEV
Sbjct: 183 AYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEV 242
Query: 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLS 348
MTGFR+AY Q Y+GVTPDLT LGK+IGGGLPVGAYGG+ +IM VAP+GP+YQAGTLS
Sbjct: 243 MTGFRVAYNCGQGYYGVTPDLTCLGKVIGGGLPVGAYGGKAEIMRQVAPSGPIYQAGTLS 302
Query: 349 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 408
GNPLAM AG TL +L P +Y + L G+ A +K G M G FF
Sbjct: 303 GNPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHINRAGSMIGIFF 361
Query: 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAE 468
T+ PV N++ AK S FA +YR M+E+GV+ PSQFE F S HS DI+ TI AAE
Sbjct: 362 TDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQFEGLFLSTVHSDADIEATIAAAE 421
Query: 469 KVLRQI 474
+ ++
Sbjct: 422 IAMSKL 427
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 790 bits (2043), Expect = 0.0
Identities = 176/426 (41%), Positives = 251/426 (58%), Gaps = 2/426 (0%)
Query: 49 TLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSW 108
+ +KS F KEL PGGVNSPVRA +V P +G++++ +DG +D V ++
Sbjct: 8 SGEKSRMLFERTKELFPGGVNSPVRA--AVKPYPFYVKRGEGAYLYTVDGARIVDLVLAY 65
Query: 109 GPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEAC 168
GP I+GH +VL A+ E + +G +GAP E +LAE ++ V M+RFVNSGTEA
Sbjct: 66 GPLILGHKHPRVLEAVEEALARGWLYGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEAT 125
Query: 169 MGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTA 228
M +RLAR +TGR+ I+KF+GCYHG D LV AGS A G+P S GVP+ TL
Sbjct: 126 MTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVT 185
Query: 229 PFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV 288
P+NDV ALE +F IA +I+EPV+ N+G I P+ +FL A++R+++E+GALLI DEV
Sbjct: 186 PYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEV 245
Query: 289 MTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLS 348
+TGFRL GAQ YF + D+ LGKIIGGG PVGA G R++M ++ P G ++ AGT +
Sbjct: 246 VTGFRLGLEGAQGYFNIEGDIIVLGKIIGGGFPVGAVAGSREVMSLLTPQGKVFNAGTFN 305
Query: 349 GNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFF 408
+P+ M AG+ TLK L+E Y + L + + + G + M F
Sbjct: 306 AHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYTINRVESMMQLFI 365
Query: 409 TEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAE 468
V N A+K++ + + + ML GV+ APS EA FT L H + ++ +
Sbjct: 366 GVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNLEAVFTGLPHQGEALEIAVEGLR 425
Query: 469 KVLRQI 474
L+ +
Sbjct: 426 SSLKTV 431
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus
thermophilus}
Length = 424
Score = 787 bits (2036), Expect = 0.0
Identities = 228/422 (54%), Positives = 286/422 (67%), Gaps = 2/422 (0%)
Query: 51 KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGP 110
SE F AK +PGGV+SPVRAFK+VGG P +G+++WD DGN Y+DYV SWGP
Sbjct: 4 PISEAYFQEAKRHIPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGP 63
Query: 111 AIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMG 170
I+GHA +VLA + ET+++G +FGAP LE LA+ V A P +++VRFVNSGTEA M
Sbjct: 64 LILGHAHPKVLARVRETLERGLTFGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMS 123
Query: 171 VLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230
LRLAR +TGR I+KF G YHGHAD LV+AGSG TLG+P S GVP+ TL +
Sbjct: 124 ALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY 183
Query: 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMT 290
ND L + + EIAAII EPVVGN+G + P DFL A+ K G LLI DEVMT
Sbjct: 184 NDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIADEVMT 242
Query: 291 GFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 350
GFRLA+GGA E G+ PDL TLGKI+GGGLP AY GRR+IME VAP GP+YQAGTLSGN
Sbjct: 243 GFRLAFGGATELLGLKPDLVTLGKILGGGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGN 302
Query: 351 PLAMTAGIHTLKRLKE-PGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409
PLAM AG+ TL+ L+E PG Y YL + L G+ + K+ G + M FFT
Sbjct: 303 PLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNRVGSMITVFFT 362
Query: 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEK 469
EGPV F+DA++++T F RF+ G+L+ G+Y+ PS FEA F S+AH +D++ T+ A K
Sbjct: 363 EGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNFEAAFLSVAHREEDVEKTLEALRK 422
Query: 470 VL 471
L
Sbjct: 423 AL 424
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 740 bits (1912), Expect = 0.0
Identities = 136/446 (30%), Positives = 206/446 (46%), Gaps = 19/446 (4%)
Query: 37 MSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDI 96
MS+ + +RK + S A+ +MP GV + RAF + +G H D+
Sbjct: 1 MSILNDYKRKT---EGSVFWAQRARSVMPDGVTADTRAFDPH---GLFISDAQGVHKTDV 54
Query: 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIE 156
DGN Y+D+ G G ++GH +V AA+ E + G + A LE AE +++A PSI
Sbjct: 55 DGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQYAASHPLEVRWAERIVAAFPSIR 114
Query: 157 MVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPG 216
+RF SGTE + LR+ARAFTGR I++FEG YHG D +G G P +PG
Sbjct: 115 KLRFTGSGTETTLLALRVARAFTGRRMILRFEGHYHGWHD--FSASGYNSHFDGQP-APG 171
Query: 217 VPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276
V T TL +D+ + +F N+ +IAA I EPV + G FL +
Sbjct: 172 VLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELA 231
Query: 277 KENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVA 336
++ GAL I DEV++GFR+ G Q V PDLT L K GGLP G GGR D+M +++
Sbjct: 232 RQYGALFILDEVISGFRVGNHGMQALLDVQPDLTCLAKASAGGLPGGILGGREDVMGVLS 291
Query: 337 PAG--PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHA 394
+ GT +GNP+ A I + + E +N + + + + G
Sbjct: 292 RGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFARKGLN 351
Query: 395 ICGGYISGMFGFF------FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA 448
F T+ + + + A ++ EGV +
Sbjct: 352 WLAYGRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGRG--S 409
Query: 449 GFTSLAHSSDDIQHTITAAEKVLRQI 474
F S H + ++H +T ++VL ++
Sbjct: 410 VFLSAQHEREHVEHLVTTFDRVLDRL 435
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 723 bits (1868), Expect = 0.0
Identities = 134/452 (29%), Positives = 206/452 (45%), Gaps = 22/452 (4%)
Query: 25 SSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIV 84
S S +++ S A+ MPGG + + P+V
Sbjct: 29 GRSPASDTAEKAQAIAAARNTFARDNPVSAGHHERARRSMPGGNTRSILFHRPF---PLV 85
Query: 85 FDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVL 144
GS D+DG+ Y++++G + + GH+ + AA+ + G + E +
Sbjct: 86 IAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNLSTQTENEALF 145
Query: 145 AEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGS 204
AE V PSI++VRF NSGTEA + L A A TGR+ ++ F+G YHG L+ S
Sbjct: 146 AEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGG----LLNFAS 201
Query: 205 GVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAP 264
G P A Y + +NDV +L + + + AAI++EP++G G +
Sbjct: 202 G----------HAPTNAPYHVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPA 251
Query: 265 KPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGA 324
+ FL+ +R GALLIFDEVMT RL+ GGAQE G++ DLTTLGK IGGG+ GA
Sbjct: 252 ERAFLDLLRAEASRCGALLIFDEVMTS-RLSGGGAQEMLGISADLTTLGKYIGGGMSFGA 310
Query: 325 YGGRRDIMEMVAPA--GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 382
+GGRRD+ME PA G AGT + N L M+AG L ++ L+
Sbjct: 311 FGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRA 370
Query: 383 GIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFA 442
+ + + + + F+ P+ + D + ++ F+ ML +G+Y A
Sbjct: 371 NLNRIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLA 430
Query: 443 PSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
P A +A + A + +
Sbjct: 431 PRGMYALSLEIADA--GRDAFAEALADFIGEQ 460
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 220 bits (564), Expect = 2e-67
Identities = 102/345 (29%), Positives = 154/345 (44%), Gaps = 56/345 (16%)
Query: 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPA 111
++E + +P GV PI D + +WD++G EY+D+ G
Sbjct: 3 SNKELMQRRSQAIPRGVGQI---------HPIFADRAENCRVWDVEGREYLDFAGGIAVL 53
Query: 112 IIGHADDQVLAALGETMKK-----GTSFGAPCLLENVLAEMVISAVP--SIEMVRFVNSG 164
GH +V+AA+ +KK LE L E++ VP + V +G
Sbjct: 54 NTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLE--LCEIMNQKVPGDFAKKTLLVTTG 111
Query: 165 TEACMGVLRLARAFTGRERIIKFEGCYHG----------HADPFLVKAGSGVATLGLPDS 214
+EA +++ARA T R I F G YHG +P+ AG G
Sbjct: 112 SEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPY--SAGMG------LMP 163
Query: 215 PGV---PKGATYETLTAPFNDVSALENLFENNKG--EIAAIILEPVVGNSGFIAPKPDFL 269
V ++ + ++++ +F+N+ +IAAI++EPV G GF A P F+
Sbjct: 164 GHVYRALYPCPLHGIS-EDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFM 222
Query: 270 NAIRRITKENGALLIFDEVMTGFRLAYGG------AQEYFGVTPDLTTLGKIIGGGLPVG 323
+R + E+G +LI DEV +G G A E GV PDLTT K I GG P+
Sbjct: 223 QRLRALCDEHGIMLIADEVQSGA-----GRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLA 277
Query: 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
GR ++M+ VAP G GT +GNP+A A + LK ++
Sbjct: 278 GVTGRAEVMDAVAPGG---LGGTYAGNPIACVAALEVLKVFEQEN 319
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 219 bits (561), Expect = 1e-66
Identities = 87/372 (23%), Positives = 143/372 (38%), Gaps = 69/372 (18%)
Query: 37 MSVSVEEQRKNFTL---KKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHM 93
M E+ R T +S+ + + GV + + P+ G +
Sbjct: 5 MVSHPEQSRHLATAIPGPRSQALIDRKGTAVARGVGTTM---------PVYAVRAGGGIV 55
Query: 94 WDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-----GTSFGAPCLLENVLAEMV 148
D+DGN ID +G++ +V+ A+ + + + E +
Sbjct: 56 EDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVA--VCEQL 113
Query: 149 ISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG----------HAD 196
P + NSG+EA +++AR+ T + ++ F+ YHG
Sbjct: 114 NRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVM 173
Query: 197 PFLVKAGSGVATLGLPDSPGV------------PKGATYETLTAPFNDVSALENLFENNK 244
P+ K G G P +P + G T + +
Sbjct: 174 PY--KDGFG------PFAPEIYRAPLSYPFRDAEFGKELATDGE--LAAKRAITVIDKQI 223
Query: 245 G--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG---- 298
G +AA+++EP+ G GFI P FL + ++N + I DEV TGF
Sbjct: 224 GADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGF-----ARTGA 278
Query: 299 --AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTA 356
A E+ G+ PDL K I GGLP+ A GR +IM+ +G GT GNP+A A
Sbjct: 279 MFACEHEGIDPDLIVTAKGIAGGLPLSAVTGRAEIMDSPHVSG---LGGTYGGNPIACAA 335
Query: 357 GIHTLKRLKEPG 368
+ T++ ++ G
Sbjct: 336 ALATIETIESEG 347
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 218 bits (558), Expect = 2e-66
Identities = 75/315 (23%), Positives = 128/315 (40%), Gaps = 43/315 (13%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P++ + KGS ++D DG +D+ A++GH ++++ +GE K + L
Sbjct: 26 PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSR 85
Query: 142 NV--LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHG----- 193
V LA + + P ++ +++G E+ +R+A+ TG+ I+ F +HG
Sbjct: 86 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAA 145
Query: 194 ----------HADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENN 243
P G + P + + ++ L+ F+
Sbjct: 146 ASATYSAGRKGVGPAA----VGSFAIPAPFTYRPRFERNGAY-----DYLAELDYAFDLI 196
Query: 244 K----GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG- 298
G +AA I EP++ + G I ++ A++R + G LLI DE TG G
Sbjct: 197 DRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGV-----GR 251
Query: 299 -----AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 353
A + GVTPD+ TL K +G GLP+ A I E T +PL
Sbjct: 252 TGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHE-LGYLFYTTHVSDPLP 310
Query: 354 MTAGIHTLKRLKEPG 368
G+ L ++ G
Sbjct: 311 AAVGLRVLDVVQRDG 325
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 219 bits (559), Expect = 3e-66
Identities = 86/315 (27%), Positives = 127/315 (40%), Gaps = 44/315 (13%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK-----GTSFGA 136
P+ G + D DGN +ID +G + V AA+ +
Sbjct: 47 PVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPY 106
Query: 137 PCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 194
++ +AE++ + P + NSG EA +++AR TGR ++ F+ YHG
Sbjct: 107 EQYVQ--VAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGR 164
Query: 195 --------ADPFLVKAG-----SGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFE 241
A K+ V + G T E + E
Sbjct: 165 TNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEA------ARRAISRIE 218
Query: 242 NNKG--EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGG- 298
G +AAII+EP+ G GFI P P FL + ENG + I DEV TGF
Sbjct: 219 TQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGF-----AR 273
Query: 299 -----AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLA 353
A E+ G+ PD+ T+ K I GG+P+ A GR ++M+ V G GT GNP+
Sbjct: 274 TGAWFASEHEGIVPDIVTMAKGIAGGMPLSAVTGRAELMDAVYAGG---LGGTYGGNPVT 330
Query: 354 MTAGIHTLKRLKEPG 368
A + L ++E
Sbjct: 331 CAAAVAALGVMRELD 345
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 212 bits (543), Expect = 4e-64
Identities = 77/317 (24%), Positives = 124/317 (39%), Gaps = 52/317 (16%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-----SFGA 136
P+ +G+ + + +G E ID G+WG A +G+ ++AA+ S
Sbjct: 26 PLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASN 85
Query: 137 PCLLENVLAEMVISAVP--SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 194
+ LAE ++++ P + F +SG++A R TGR +I F G YHG
Sbjct: 86 APAVT--LAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHG- 142
Query: 195 ADPFLVKAGSGVATLGL---------PDSPGV---PKGATYETLTAPFNDVSALENLFEN 242
V ++ + G+ P Y A+ L
Sbjct: 143 ---------CTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRND-PTGDAILTLLTE 192
Query: 243 NK-----GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYG 297
G I A +EP+ + G I P FL I + +G L++ DEV G
Sbjct: 193 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGL----- 247
Query: 298 G------AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351
E+ G PD+ LGK +GGGLP+ A +I++ + TL GNP
Sbjct: 248 ARSGRLHCFEHEGFVPDILVLGKGLGGGLPLSAVIAPAEILDCASAF----AMQTLHGNP 303
Query: 352 LAMTAGIHTLKRLKEPG 368
++ AG+ L+ +
Sbjct: 304 ISAAAGLAVLETIDRDD 320
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 197 bits (504), Expect = 7e-59
Identities = 98/323 (30%), Positives = 150/323 (46%), Gaps = 35/323 (10%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 136
++ +G+ +WD +GNEYID VG +G A +GH + +V+ A+ +
Sbjct: 27 HDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPT 86
Query: 137 PCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHA 195
P E + + +P + V VNSGTEA L+ ARA TGR++ + + G
Sbjct: 87 PMRGE--FYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRT 144
Query: 196 DPFLVKAGSGVATLGLPDSPGV-------PKGATYETLTAPFNDVSALENLFENNKGEIA 248
+ +L + P + + P+NDV AL+ + A
Sbjct: 145 ----------MGSLSVTWEPKYREPFLPLVEPVEF----IPYNDVEALKRAVDEE---TA 187
Query: 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTP 307
A+ILEPV G G P+FL A R IT+E GALLI DE+ TG R A E+FG+ P
Sbjct: 188 AVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVP 247
Query: 308 DLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 367
D+ TL K +GGG+P+G R ++ + G T GNPLAM AG+ ++ L+
Sbjct: 248 DILTLAKALGGGVPLGVAVMREEVARSMPKGG---HGTTFGGNPLAMAAGVAAIRYLERT 304
Query: 368 GTYEYLNKITGELTQGIIDAGKK 390
+E ++ + +
Sbjct: 305 RLWERAAELGPWFMEKLRAIPSP 327
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 193 bits (492), Expect = 6e-57
Identities = 86/340 (25%), Positives = 146/340 (42%), Gaps = 46/340 (13%)
Query: 60 AKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG-HADD 118
+++++ + + P+V D +G ++D+DGN+Y+D+ G +G +
Sbjct: 3 SRKIIEESDIYLATSTRDPELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHP 62
Query: 119 QVLAALGETMKK-----GTSFGAPCLLENVLAEMVISAVPSIEMVR--FVNSGTEACMGV 171
+V+ E M+K F LE LA+ +++ P + F NSGTEA
Sbjct: 63 EVIKIGIEQMQKLAHAAANDFYNIPQLE--LAKKLVTYSPGNFQKKVFFSNSGTEAIEAS 120
Query: 172 LRLARAFTGRERIIKFEGCYHGH--------ADPFLVKAG-----SGVATLGLPDSPGVP 218
+++ + TGR+ II F G +HG A + ++ GV + P+ P
Sbjct: 121 IKVVKN-TGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNP 179
Query: 219 KGATY-----ETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 273
E + + + E+A I EP+ G G++ P +F ++
Sbjct: 180 WHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQ 239
Query: 274 RITKENGALLIFDEVMTGFRLAYGG------AQEYFGVTPDLTTLGKIIGGG-LPVGAYG 326
++ K+ G LL+ DEV G G A E F PD+ TL K +GGG +P+GA
Sbjct: 240 KLAKKYGILLVDDEVQMGL-----GRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATI 294
Query: 327 GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKE 366
R+D+ P + T GN LA G + +K+
Sbjct: 295 FRKDLDF-----KPGMHSNTFGGNALACAIGSKVIDIVKD 329
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 184 bits (469), Expect = 9e-54
Identities = 84/336 (25%), Positives = 139/336 (41%), Gaps = 56/336 (16%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP 137
PIV +G + D +GN Y+D + ++ GH +++ AL + + T +F +
Sbjct: 19 PIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSD 78
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEG 189
L E ++ + + EMV +N+G EA ++ AR + R II E
Sbjct: 79 QLGP--WYEK-VAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCED 135
Query: 190 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNK 244
+HG + + + + +G + + P+ D+ AL+ N
Sbjct: 136 NFHGRT----------MGAVSMSSNEEYKRG--FGPMLPGIIVIPYGDLEALKAAITPN- 182
Query: 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-----RLAYGGA 299
AA ILEP+ G +G P FL + K+ L + DE+ TG A
Sbjct: 183 --TAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFAC--- 237
Query: 300 QEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAM 354
++ VTPD+ LGK +GGG+ P+ RDI+ + P G T GNPLA
Sbjct: 238 -DWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEP-------GSHGSTFGGNPLAC 289
Query: 355 TAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390
I L+ L+E E ++ +L + +
Sbjct: 290 AVSIAALEVLEEEKLTERSLQLGEKLVGQLKEIDNP 325
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 183 bits (468), Expect = 4e-53
Identities = 84/315 (26%), Positives = 135/315 (42%), Gaps = 55/315 (17%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGA 136
P+ + KG ++WD++G +Y D++ S+ GH +++ AL + K T +F
Sbjct: 58 LPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYN 117
Query: 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFE 188
L E E I+ + + V +N+G EA +LAR + + +I+
Sbjct: 118 NVLGE--YEEY-ITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAA 174
Query: 189 GCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENN 243
G + G ++ + P G + P+ND+ ALE ++
Sbjct: 175 GNFWGRT----------LSAISSSTDPTSYDG--FGPFMPGFDIIPYNDLPALERALQDP 222
Query: 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-----RLAYGG 298
+AA ++EP+ G +G + P P +L +R + + L I DE+ TG LA
Sbjct: 223 N--VAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAV-- 278
Query: 299 AQEYFGVTPDLTTLGKIIGGGL-PVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLA 353
+Y V PD+ LGK + GGL PV A DIM + P G T GNPL
Sbjct: 279 --DYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKP-------GEHGSTYGGNPLG 329
Query: 354 MTAGIHTLKRLKEPG 368
I L+ L+E
Sbjct: 330 CRVAIAALEVLEEEN 344
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 182 bits (465), Expect = 8e-53
Identities = 70/314 (22%), Positives = 122/314 (38%), Gaps = 55/314 (17%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT----SFGAP 137
P+V KG ++D++ Y D++ ++ GH +L A+ K T +F +
Sbjct: 48 PVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSV 107
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF--------TGRERIIKFEG 189
L ++ + + V +N+G EA +L R + +I+ +
Sbjct: 108 PLGI--CERY-LTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKN 164
Query: 190 CYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNK 244
+ G + + + + P++D+ ALE ++
Sbjct: 165 NFSGRT----------LGCISASTTKKCTSN--FGPFAPQFSKVPYDDLEALEEELKDP- 211
Query: 245 GEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-----RLAYGGA 299
+ A I+EP+ G +G I P ++L + I K+ L + DEV TG L
Sbjct: 212 -NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCV--- 267
Query: 300 QEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAM 354
++ V PD+ LGK + GG P+ A DIM ++ P G T GNPLA
Sbjct: 268 -HHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKP-------GEHGSTYGGNPLAA 319
Query: 355 TAGIHTLKRLKEPG 368
+ + L L
Sbjct: 320 SICVEALNVLINEK 333
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 178 bits (455), Expect = 6e-52
Identities = 91/309 (29%), Positives = 138/309 (44%), Gaps = 51/309 (16%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 136
P+ F KG +++D +G EY+D+V G +GHA ++ AL E ++K S +
Sbjct: 10 LPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYEN 69
Query: 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCY 191
P E LA ++ + V F NSGTE+ ++LAR + + + I FE +
Sbjct: 70 PWQEE--LAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSF 127
Query: 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGE 246
HG +L P KG +E L A ND+ ++ L +
Sbjct: 128 HGRT----------YGSLSATGQPKFHKG--FEPLVPGFSYAKLNDIDSVYKLLDEE--- 172
Query: 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R----LAYGGAQE 301
A II+E + G G DFL+ ++ I KE LLI DEV TG R AY +
Sbjct: 173 TAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAY----Q 228
Query: 302 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAG 357
+F + PD+ L K +GGG+P+GA + + G T GNPLA AG
Sbjct: 229 HFNLKPDVIALAKGLGGGVPIGA-------ILAREEVAQSFTPGSHGSTFGGNPLACRAG 281
Query: 358 IHTLKRLKE 366
+ +++
Sbjct: 282 TVVVDEVEK 290
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 178 bits (454), Expect = 2e-51
Identities = 90/332 (27%), Positives = 146/332 (43%), Gaps = 45/332 (13%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 136
P F KGS ++D GN Y+D+ ++GH+ +++ A+ + +K S F
Sbjct: 22 FPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWN 81
Query: 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCY 191
+E LAE++ V F N+GTEA +++AR + + RI+ +
Sbjct: 82 RPQME--LAELLSKNTFG-GKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSF 138
Query: 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGE 246
HG + +L P K +E L FN+V L +
Sbjct: 139 HGRT----------LGSLTATGQPKYQKP--FEPLVPGFEYFEFNNVEDLRRKMSED--- 183
Query: 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 305
+ A+ LEP+ G SG + +FL R++ E ALL+FDEV G R A + +GV
Sbjct: 184 VCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGV 243
Query: 306 TPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAGIHTL 361
PD+ T K +GGG+P+GA +V + + G T GNPLA AG+ +
Sbjct: 244 VPDVLTTAKGLGGGVPIGAV--------IVNERANVLEPGDHGTTFGGNPLACRAGVTVI 295
Query: 362 KRLKEPGTYEYLNKITGELTQGIIDAGKKAGH 393
K L + G E + + L + + + ++
Sbjct: 296 KELTKEGFLEEVEEKGNYLMKKLQEMKEEYDV 327
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 178 bits (453), Expect = 2e-51
Identities = 88/333 (26%), Positives = 138/333 (41%), Gaps = 51/333 (15%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGA 136
IV + +G +++D +Y+D+ G +G+ + A + + K TS +
Sbjct: 18 FDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYN 77
Query: 137 PCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF-----TGRERIIKFEGCY 191
+ A+ + A E V F NSGTE+ G ++ AR + + I F+ +
Sbjct: 78 ENIAA--AAKNLAKASAL-ERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSF 134
Query: 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGE 246
HG + L L + K ++ L A +ND+S++E L
Sbjct: 135 HGRT----------LGALSLTANEKYQKP--FKPLISGVKFAKYNDISSVEKLVNEK--- 179
Query: 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R----LAYGGAQE 301
AIILE V G G DF A+R++ E LLI DE+ G R AY E
Sbjct: 180 TCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAY----E 235
Query: 302 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAG 357
+ + PD+ T K +G GL VGA+ + + A +AG T GNPL
Sbjct: 236 HAQILPDIMTSAKALGCGLSVGAFVINQKV------ASNSLEAGDHGSTYGGNPLVCAGV 289
Query: 358 IHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK 390
+ KE E +NK+T L Q + + +
Sbjct: 290 NAVFEIFKEEKILENVNKLTPYLEQSLDELINE 322
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 178 bits (454), Expect = 3e-51
Identities = 92/326 (28%), Positives = 138/326 (42%), Gaps = 53/326 (16%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK--GTS--FGAP 137
+ KGS +WD G EYID+ G +GH ++ AL + TS F
Sbjct: 40 DFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNE 99
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFEGCY 191
L L +I A + E V F+NSGTEA +LAR + + +II F +
Sbjct: 100 PALR--LGRKLIDATFA-ERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAF 156
Query: 192 HGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT-----APFNDVSALENLFENNKGE 246
HG + + T+ + P G + PFND+ A++ + +++
Sbjct: 157 HGRS----------LFTVSVGGQPKYSDG--FGPKPADIIHVPFNDLHAVKAVMDDH--- 201
Query: 247 IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-R----LAYGGAQE 301
A+++EP+ G G A P+FL +R + E+ ALL+FDEV G R AY
Sbjct: 202 TCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAY----M 257
Query: 302 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAG----TLSGNPLAMTAG 357
++GVTPD+ T K +GGG PV A M + G T GNPLA
Sbjct: 258 HYGVTPDILTSAKALGGGFPVSA-------MLTTQEIASAFHVGSHGSTYGGNPLACAVA 310
Query: 358 IHTLKRLKEPGTYEYLNKITGELTQG 383
+ P + ++ + Q
Sbjct: 311 GAAFDIINTPEVLQGIHTKRQQFVQH 336
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 170 bits (433), Expect = 5e-48
Identities = 70/356 (19%), Positives = 112/356 (31%), Gaps = 54/356 (15%)
Query: 59 VAKELMPGGVNSPVRAFKSVG--------GQPIVFDSVKGSHMWD-IDGNEYIDYVGSWG 109
V + G +P R + +G + GS++ D I G Y+D
Sbjct: 5 VKSVALAGRPTTPDRVHEVLGRSMLVDGLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVA 64
Query: 110 PAIIGHADDQVLAALGETMKKGTSFGAPCLLENV-------LAEMVISAVPSIEMVR--F 160
+ +G ++ + + +V E + + F
Sbjct: 65 SSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFF 124
Query: 161 VNSGTEACMGVLRLARAFTGRE------------RIIKFEGCYHG---------HADPFL 199
V G A L+ A + R +++ G +HG + P +
Sbjct: 125 VEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTI 184
Query: 200 VKAGSGVATLGLPDSPGVPKGATYETLT-APFNDVSALENLFENNKGEIAAIILEPVVGN 258
A D+P + G + + FE +IA + EP+ G
Sbjct: 185 -TARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGE 243
Query: 259 SGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF----RL-AYGGAQEYFGVTPDLTTLG 313
G +P+F A+R + E ALLIFDEV TG AY + V PD+ G
Sbjct: 244 GGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAY----QQLDVAPDIVAFG 299
Query: 314 K-IIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
K G+ G A P T GN M L+ ++ G
Sbjct: 300 KKTQVCGVMAGRRVDEVADN---VFAVPSRLNSTWGGNLTDMVRARRILEVIEAEG 352
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 168 bits (428), Expect = 4e-47
Identities = 58/344 (16%), Positives = 107/344 (31%), Gaps = 71/344 (20%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCL-- 139
++ +G+++ D+DGN +D IG++ ++ + + T P L
Sbjct: 46 FCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGI 105
Query: 140 -----LENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAFTGRER---------- 183
L E ++S P + + + G+ + + + +
Sbjct: 106 LPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEE 165
Query: 184 ----------------IIKFEGCYHG---------HADPFLVKAGSGVATLGLPDSPGVP 218
I+ F G +HG H+ K + P +
Sbjct: 166 LETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAI-HKIDIPSFDWPIAPFPRLK 224
Query: 219 KGATYETLTAPFNDVSALENL------FENNKGEIAAIILEPVVGNSGFIAPKPDFLNAI 272
+ LE + + K +A II+EP+ G DF +
Sbjct: 225 YPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKL 284
Query: 273 RRITKENGALLIFDEVMTGFRLAYGG------AQEYFGVT--PDLTTLGKIIGGGLPVGA 324
R I++++G + DEV TG G A E++G+ D+ T K + G
Sbjct: 285 RDISRKHGCAFLVDEVQTGG-----GSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHK 339
Query: 325 YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
E P P T G+P + +K
Sbjct: 340 --------EEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKRED 375
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 160 bits (406), Expect = 3e-44
Identities = 79/359 (22%), Positives = 137/359 (38%), Gaps = 44/359 (12%)
Query: 71 PVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130
+R F V +G + DI G Y+D + G+ ++ A + ++
Sbjct: 23 GMRPFSPNS--TTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQT 80
Query: 131 ----GTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TG 180
S ++ LAE + + ++ F NSG+EA ++AR +
Sbjct: 81 LSYFPMSQSHEPAIK--LAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPH 138
Query: 181 RERIIKFEGCYHG--------------HA--DPFLVKAGSGVATLGLPDSPGVPKGATYE 224
R + + YHG +PF SG + PD +P
Sbjct: 139 RYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFA----SGFLHVTPPDCYRMPGIEREN 194
Query: 225 TLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALL 283
V ++ + E IAA I+EP++ G + D++ A+ +++GALL
Sbjct: 195 IYDVEC--VKEVDRVMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALL 252
Query: 284 IFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGP- 340
I DEV+ GF R + V PD+ T+ K I LP+ A +R+I E G
Sbjct: 253 ISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEY 312
Query: 341 -MYQAG-TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICG 397
++ T GNP A + L+ ++ E ++ L + + + H + G
Sbjct: 313 EFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEE--IGEHPLVG 369
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 153 bits (390), Expect = 6e-42
Identities = 93/450 (20%), Positives = 156/450 (34%), Gaps = 90/450 (20%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P++ +S G + DI+G EY D S + GH ++ A+ + + K +
Sbjct: 27 PLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGK---------IA 77
Query: 142 NV------------LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRE 182
+ LAE +I P + V + +SG EA L++A + ++
Sbjct: 78 HSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQ 137
Query: 183 RIIKFEGCYHG--------------HA--DPFLVKAGSGVATLGLPDSPGVPKGATYETL 226
+ I + YHG H P + +P G E
Sbjct: 138 KFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLM----FESYKAPIPYVYRSESGDPDECR 193
Query: 227 TAPFNDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIF 285
+ L L E + EIAA+ +E +V G SG I +L +R + L+I
Sbjct: 194 DQ---CLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIV 250
Query: 286 DEVMTGF-RLAYGG---AQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGP 340
DEV TGF R G A E+ V PDL GK I GG LP+ DI + A
Sbjct: 251 DEVATGFGRT---GKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYK--AFYDD 305
Query: 341 MYQAGTL------SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHA 394
T +GN L + L + E + + + +L + D
Sbjct: 306 YENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDL---HALP 362
Query: 395 ICGGY-ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGV---------YFAPS 444
G G ++ ++ + M E G+ F P
Sbjct: 363 HVGDIRQLGFMCGAELVRSK-ETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFLP- 420
Query: 445 QFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
LA +++++ + ++ + ++
Sbjct: 421 -------PLASTAEELSEMVAIMKQAIHEV 443
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 151 bits (384), Expect = 3e-41
Identities = 81/324 (25%), Positives = 126/324 (38%), Gaps = 51/324 (15%)
Query: 80 GQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAI--IGHADDQVLAALGETMKK-----GT 132
V +G ++D G Y+D GS G + IGH +V + + G+
Sbjct: 10 KPYPVAVRGEGVFLYDDAGRRYLD--GSSGALVANIGHGRAEVGERMAAQAARLPFVHGS 67
Query: 133 SFGAPCLLENVLAEMVISAVPS-IEMVRFVNSGTEACMGVLRLARAF------TGRERII 185
F + L E A + V V+ G+EA ++LAR + GR ++I
Sbjct: 68 QFSSDVLEE--YAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVI 125
Query: 186 KFEGCYHGHADPFLVKAGSGVATLGL---------------PDSPGVPKGATYETLTAPF 230
YHG + + +L P++ A
Sbjct: 126 TRVPSYHG----------ASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGA-- 173
Query: 231 NDVSALENLFENNKGE-IAAIILEPVVGNS-GFIAPKPDFLNAIRRITKENGALLIFDEV 288
D L L E E +AA + EPVVG S +AP P + +R I E G + I DEV
Sbjct: 174 EDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEV 233
Query: 289 MTGF-RL-AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAG 345
M+G R + + GVTPD+ LGK + G P+ + E V + G
Sbjct: 234 MSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHG 293
Query: 346 -TLSGNPLAMTAGIHTLKRLKEPG 368
T +G+P+++ AG+ L ++
Sbjct: 294 FTYAGHPVSVAAGLSVLDIVERED 317
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 146 bits (371), Expect = 3e-39
Identities = 77/369 (20%), Positives = 132/369 (35%), Gaps = 55/369 (14%)
Query: 70 SPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129
+ + + +G +WD +G + ID +G+ ++ A+ K
Sbjct: 22 THMGTHARGESPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAK 81
Query: 130 K------GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---- 178
G + LA+M+I P + V F SG++A ++L +
Sbjct: 82 NLAYYHAYVGHGTEASIT--LAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVL 139
Query: 179 --TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-----------PDSPGVPK-GATYE 224
+++II YHG SGV T L V A Y
Sbjct: 140 GRPEKKKIISRWRGYHG----------SGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYY 189
Query: 225 TLTAPFND---------VSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRR 274
+ LE + E IAA I EP++G G + P + I+
Sbjct: 190 FRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQA 249
Query: 275 ITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIM 332
+ K+ LL+ DEV+TGF RL +++G+ PDL T+ K + P+ +
Sbjct: 250 VLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVW 309
Query: 333 EMVA----PAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAG 388
+++ G + T S +P+ + AG+ L+ + E + + A
Sbjct: 310 QVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKA- 368
Query: 389 KKAGHAICG 397
GH G
Sbjct: 369 -VGGHKNVG 376
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 145 bits (368), Expect = 9e-39
Identities = 75/334 (22%), Positives = 129/334 (38%), Gaps = 42/334 (12%)
Query: 70 SPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129
+ + G V +G ++WD +GN+ ID + +G+ A M+
Sbjct: 23 TDTASLNQAG--ARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQME 80
Query: 130 K------GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF---- 178
+ P ++E L+ ++ P + V + NSG+E+ ++R+ R +
Sbjct: 81 ELPFYNTFFKTTHPAVVE--LSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQ 138
Query: 179 --TGRERIIKFEGCYHG--------------HA--DPFLVKAGSGVATLGLPDSPGVPKG 220
++ +I YHG H D + G+A + P K
Sbjct: 139 GKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPI----PGMAHIEQPWWYKHGKD 194
Query: 221 ATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKEN 279
T + LE + +AA + EP+ G G I P + I RI ++
Sbjct: 195 MTPDEFGVVA--ARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKY 252
Query: 280 GALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP 337
LL+ DEV+ GF R ++FG PDL T K + G LP+GA + + E +
Sbjct: 253 DVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAEGLIA 312
Query: 338 AGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYE 371
G T SG+P+ + L++ G +
Sbjct: 313 GGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQ 346
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 145 bits (367), Expect = 9e-39
Identities = 77/356 (21%), Positives = 138/356 (38%), Gaps = 54/356 (15%)
Query: 71 PVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK 130
P A ++ P + + +GS + D G + D + GH ++ A+ + +
Sbjct: 22 PYTANRNFLRDPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLST 81
Query: 131 ---GTSFGA--PCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------ 178
F P + LAE + P ++ V F +SG+E + +++ RA+
Sbjct: 82 LDYSPGFQYGHPLSFQ--LAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQ 139
Query: 179 TGRERIIKFEGCYHGHADPFLVKAGSGVATL---GLP----------------DSPGVPK 219
+ ++I YHG +A G+ +
Sbjct: 140 ATKTKMIGRARGYHG----------VNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLAS 189
Query: 220 GATYETLTAPFNDVSA--LENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRIT 276
A + A L L E + IAA+ +EP+ G++G + P +L R I
Sbjct: 190 NAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREIC 249
Query: 277 KENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIMEM 334
++ LL+FDEV+TGF R + FGVTPDL + K + G +P+GA +I +
Sbjct: 250 NQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQT 309
Query: 335 VAPAGPMYQAGTL------SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 384
A S +P+A AG+ L L++ + + ++ + +
Sbjct: 310 FMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKAL 365
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 143 bits (363), Expect = 5e-38
Identities = 62/335 (18%), Positives = 117/335 (34%), Gaps = 36/335 (10%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKK------GTSFG 135
+V +G ++ D++G Y+D + G ++ A ++
Sbjct: 44 TVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRM 103
Query: 136 APCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF------TGRERIIKFE 188
+ + L+E ++ P V + NSG+EA ++++ + +I+
Sbjct: 104 SDQTVM--LSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRW 161
Query: 189 GCYHGHADPFLVKAGSGVA---TLGLP-------DSPGVPKGATYETLTAPFND--VSAL 236
YHG + + +G GLP P + F L
Sbjct: 162 NAYHG--VTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLAREL 219
Query: 237 ENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RL 294
E + + IA EPV+G G I P + AI I ++ +I DEV+ GF R
Sbjct: 220 EETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRT 279
Query: 295 AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVA----PAGPMYQAGTLSG 349
+ TPD K + G P+GA ++ + + T SG
Sbjct: 280 GNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASG 339
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 384
+P+ + + + G E + ++ + +
Sbjct: 340 HPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERL 374
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold
type I, subclass II, homodimer; HET: LLP; 1.71A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A*
1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A*
1dty_A*
Length = 429
Score = 141 bits (359), Expect = 1e-37
Identities = 87/339 (25%), Positives = 138/339 (40%), Gaps = 53/339 (15%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
S +G + DG +D + SW AI G+ Q+ AA+ + +
Sbjct: 26 VYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDA---------MS 76
Query: 142 NV------------LAEMVISAVP-SIEMVRFVNSGTEACMGV---LRLARAF-----TG 180
+V L +++ P +E V +SG+ A V +++A +
Sbjct: 77 HVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVA---VEVAMKMALQYWQAKGEA 133
Query: 181 RERIIKFEGCYHGHADPFLVKAGSGVATL-------GLPDSPGVPKGATYETLTAPFNDV 233
R+R + F YHG D F + LP++ P + D+
Sbjct: 134 RQRFLTFRNGYHG--DTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDM 191
Query: 234 SALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292
L ++ EIAA+I+EP+V G G P++L IR+I G LLI DE+ TGF
Sbjct: 192 VGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGF 251
Query: 293 -RLAYGG---AQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIME--MVAPAGPMYQAG 345
R G A E+ + PD+ LGK + GG + + A R++ E AG
Sbjct: 252 GRT---GKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGP 308
Query: 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 384
T GNPLA A +L L+ + + I +L + +
Sbjct: 309 TFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQL 347
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 141 bits (357), Expect = 3e-37
Identities = 85/345 (24%), Positives = 144/345 (41%), Gaps = 65/345 (18%)
Query: 82 PIVFDSVKGSH---MWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPC 138
P+V + G+ + D E +D + SW AI GH + AL ++
Sbjct: 55 PVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRV-------- 106
Query: 139 LLENV------------LAEMVISAVP-SIEMVRFVNSGTEACMGV---LRLARAF---- 178
+ +V LA++++ P ++ V F +SG+ + V ++A +
Sbjct: 107 -MNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVS---VEVAAKMALQYWRGR 162
Query: 179 --TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP--GVPKGATYETLTAPF---- 230
G+ R++ + G YHG D F ++ P + + AP
Sbjct: 163 GLPGKRRLMTWRGGYHG--DTF------LAMSICDPHGGMHSLWTDVLAAQVFAPQVPRD 214
Query: 231 ---NDVSALENLFENNKGEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFD 286
+A E + GE+AA+++EPVV G G P +L+ +R I + LLIFD
Sbjct: 215 YDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFD 274
Query: 287 EVMTGF-RLAYGG---AQEYFGVTPDLTTLGK-IIGGGLPVGAYGGRRDIME--MVAPAG 339
E+ TGF R G A ++ GV+PD+ +GK + GG L + A D+ AG
Sbjct: 275 EIATGFGRT---GALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAG 331
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGI 384
+ T NPLA + +++ L + ++ LT G+
Sbjct: 332 ALMHGPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGL 376
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 139 bits (352), Expect = 2e-36
Identities = 78/374 (20%), Positives = 130/374 (34%), Gaps = 47/374 (12%)
Query: 55 EAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIG 114
+A + A L P S A G V +G + D +G E +D + IG
Sbjct: 16 QALDAAHHLHP---FSANNALGEEG--TRVITRARGVWLNDSEGEEILDAMAGLWCVNIG 70
Query: 115 HADDQVLAALGETMKK------GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEA 167
+ D++ M++ + LA+ + P + V F G+EA
Sbjct: 71 YGRDELAEVAARQMRELPYYNTFFKTTHVPAIA--LAQKLAELAPGDLNHVFFAGGGSEA 128
Query: 168 CMGVLRLARAF------TGRERIIKFEGCYHG--------------HAD-PFLVKAGSGV 206
+R+ R + + II + YHG HA + V
Sbjct: 129 NDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLI----PDV 184
Query: 207 ATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPK 265
+ P+ E LE +AA I EPV G G I
Sbjct: 185 HHINQPNWWAEGGDMDPEEFGLAR--ARELEEAILELGENRVAAFIAEPVQGAGGVIVAP 242
Query: 266 PDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGGG-LPVG 323
+ I+RI + LLI DEV+ GF R + G+ P + T+ K + G P+G
Sbjct: 243 DSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIG 302
Query: 324 AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQG 383
++ ++ T SG+P+A + L+ L+E +++ + +
Sbjct: 303 GSIVCDEVAHVIG-KDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKE 361
Query: 384 IIDAGKKAGHAICG 397
+A H + G
Sbjct: 362 KWEA--LTDHPLVG 373
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 135 bits (342), Expect = 2e-34
Identities = 78/488 (15%), Positives = 139/488 (28%), Gaps = 111/488 (22%)
Query: 82 PIVFDSVKGSHMWDID------GNEYIDYVGSWGPAIIGHADDQVLAA--------LGET 127
V DS G + ++ D SW LA G
Sbjct: 357 VTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHV 416
Query: 128 MKKGTSFGAPCLLENVLAEMVISAVPSIEMVR--FVNSGTEACMGVLRLARAF------- 178
M L+ AE+++ V R F ++G+ A L++A
Sbjct: 417 MFPE--NVYEPALK--CAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNF 472
Query: 179 --------TGRERIIKFEGCYHG----------------------------HADPFLVKA 202
++I G YHG DP V
Sbjct: 473 CEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFL 532
Query: 203 GSGVATLGLPD--SPGVPKGATYETLTAPFND-----------VSALENLFE-----NNK 244
+G + LP+ S P+ T+ + F+ + L +
Sbjct: 533 SNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQS 592
Query: 245 GEIAAIILEPVV-GNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEY 302
+ A+I+EPV+ G G P F + + +IFDEV TGF RL E
Sbjct: 593 AHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTEL 652
Query: 303 FGVTPDLTTLGKIIGGG-LPVGAYGGRRDIMEMV---APAGPMYQAGTLSGNPLAMTAGI 358
G PD+ K++ GG +P+ + + + + + S + +
Sbjct: 653 LGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAA 712
Query: 359 HTLKRLKEPGTYEYLNKITGELTQGIIDAGKK--AGHAICGGY-ISGMFGFFFTEGPVYN 415
++ K+P T + L + + + + H+ + G +
Sbjct: 713 KAIQWFKDPETNHNITSQGKTLRELWDEELVQQISSHSAVQRVVVIGTLFALELKADA-- 770
Query: 416 FEDAKKSETTKFARFYRGMLEEGV---------YFAPSQFEAGFTSLAHSSDDIQHTITA 466
+ + E+G+ Y S + + +T
Sbjct: 771 --SNSGYASLYAKSLLIMLREDGIFTRPLGNVIYLMC--------GPCTSPEICRRLLTK 820
Query: 467 AEKVLRQI 474
K L +
Sbjct: 821 LYKRLGEF 828
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 133 bits (336), Expect = 3e-34
Identities = 66/343 (19%), Positives = 120/343 (34%), Gaps = 57/343 (16%)
Query: 70 SPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMK 129
+ V +G ++ DG ID A +G+ +++ A+
Sbjct: 27 QEMAKLGKSA--QPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAM 84
Query: 130 K-----GTSFGAPCLLENVLAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAF----- 178
LAE + + P + + F G+ A LR + +
Sbjct: 85 VLPYASPWYMATSPAAR--LAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLG 142
Query: 179 -TGRERIIKFEGCYHGHADPFLVKAGSGVATLGL-----------PDSPGV--------- 217
++RII YHG S T +
Sbjct: 143 RPQKKRIIVRYDGYHG----------STALTAACTGRTGNWPNFDIAQDRISFLSSPNPR 192
Query: 218 -PKGATYETLTAPFNDVSALENLFENNKGE-IAAIILEPVVGNSGFIAPKPDFLNAIRRI 275
+ E V E+ E+ + IAA + EP++ + G I P + + I
Sbjct: 193 HAGNRSQEAFLDDL--VQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAI 250
Query: 276 TKENGALLIFDEVMTGF-RL-AYGGAQEYFGVTPDLTTLGKIIGGG-LPVGAYGGRRDIM 332
+++ L I DEV+TGF R + +++ FGV PD+ T K + G +P+G ++
Sbjct: 251 CEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAISEAVL 310
Query: 333 EMVA---PAGPMYQAG-TLSGNPLAMTAGIHTLKRLKEPGTYE 371
++ G + G T S P+A A + ++ ++ G +
Sbjct: 311 ARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVD 353
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 6e-07
Identities = 62/435 (14%), Positives = 111/435 (25%), Gaps = 136/435 (31%)
Query: 12 LGLSCSSKLTNRFSSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAFNVAKELMPGGVNS- 70
LSC LT RF + +S++ T + + K L
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYL---DCRPQ 316
Query: 71 --PVRAFKSVGGQPIVFDSV-----KGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAA 123
P + P + G WD +V
Sbjct: 317 DLPREV---LTTNPRRLSIIAESIRDGLATWD-----NWKHVNCD--------------K 354
Query: 124 LGETMKKGTSFGAPCLLENVLAEMVI----SAVPSIEMVRF-VNSGTEACMGVL-RLARA 177
L ++ + P + + + + +P+I + + M V+ +L +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 178 FTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALE 237
LV+ +T+ +P Y L + AL
Sbjct: 415 --------------------SLVEKQPKESTISIPS--------IYLELKVKLENEYALH 446
Query: 238 NLFENNKGEIAAIILEPVVGNSGFIAPKPD--FLNAIRR--ITKENGALLIFDEVMTGFR 293
+ + + I P D F + I E+ E MT FR
Sbjct: 447 RSI------VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH------PERMTLFR 494
Query: 294 LAYGGAQEYFGVTPDLTTLG-KIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPL 352
+ + D L KI A G +
Sbjct: 495 MVF----------LDFRFLEQKIRHDSTAWNASGSILN---------------------- 522
Query: 353 AMTAGIHTLKRLKEPGTYE-YLNKITGELTQGIIDAGK---KAG-HAICGGYISGM-FGF 406
TL++LK Y+ Y+ + + + K + IC Y +
Sbjct: 523 -------TLQQLK---FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
Query: 407 FFTEGPVYNFEDAKK 421
+ ++ E+A K
Sbjct: 573 MAEDEAIF--EEAHK 585
Score = 46.0 bits (108), Expect = 3e-05
Identities = 56/386 (14%), Positives = 98/386 (25%), Gaps = 102/386 (26%)
Query: 61 KELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQV 120
K+++ V AF V D K I E ID++ + A
Sbjct: 19 KDILS--VFED--AFVDNFDCKDVQDMPKS-----ILSKEEIDHI-----IMSKDAVSGT 64
Query: 121 LAALGETMKKGTSFGAPCLLENVLA---EMVISAV------PSIEMVRFVNSGTEACMGV 171
L + K +E VL + ++S + PS+ ++
Sbjct: 65 LRLFWTLLSKQEE-MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 172 LRLARAFTGRERIIKF--EGCYHGHADPFLV---KAGSG---VATLGLPDSP---GVPKG 220
A+ R + + ++ GSG VA +
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183
Query: 221 ATYETL---TAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITK 277
+ L +P + L+ L + S +RR+ K
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS----SNIKLRIHSIQAELRRLLK 239
Query: 278 ENG---ALLIFDEV-----MTGFRL---------------AYGGAQEY--------FGVT 306
LL+ V F L A +T
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 307 PD--LTTLGKIIG---GGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 361
PD + L K + LP + L+ NP + + I
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPR--------------------EV--LTTNPRRL-SIIAES 336
Query: 362 KRLKEPGTYEYLNKITGELTQGIIDA 387
R T++ + + II++
Sbjct: 337 IR-DGLATWDNWKHVNCDKLTTIIES 361
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 50.3 bits (121), Expect = 7e-07
Identities = 56/270 (20%), Positives = 93/270 (34%), Gaps = 58/270 (21%)
Query: 231 NDVSALEN-LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV- 288
N V L+ L K ++LE V G IAP L + + K++GA+++ DE
Sbjct: 178 NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAH 233
Query: 289 MTGFRLAYG----GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPAG 339
GF +G G E G+ + T K +G VG + E V A
Sbjct: 234 SMGF---FGPNGRGVYEAQGLEGQIDFVVGTFSKSVGT---VGGFVVSNHPKFEAVRLAC 287
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLK-EPGTYEYLNKITGELTQGIIDAG-----KKAGH 393
Y S P + ++++L E L L G+ G +
Sbjct: 288 RPYIFTA-SLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAMGFRLGTETCDS 346
Query: 394 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA---G- 449
AI V ED +++ A ++ +L+ G+Y ++ A G
Sbjct: 347 AIV---------------AVM-LEDQEQA-----AMMWQALLDGGLYVNMARPPATPAGT 385
Query: 450 ----FT-SLAHSSDDIQHTITAAEKVLRQI 474
+ H+ IQ + + R +
Sbjct: 386 FLLRCSICAEHTPAQIQTVLGMFQAAGRAV 415
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 50.3 bits (121), Expect = 7e-07
Identities = 53/270 (19%), Positives = 87/270 (32%), Gaps = 60/270 (22%)
Query: 231 NDVSALEN-LFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV- 288
N++ L L + I + + G I L + I E A ++ D+
Sbjct: 157 NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAH 212
Query: 289 MTGFRLAYG-GAQEYFGVTPD----LTTLGKIIGGGLPVGAY-GGRRDIMEMVAPAGP-- 340
G G G +FG+ D + T K + +G + G D+++ +
Sbjct: 213 SLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLAS---LGGFVAGDADVIDFLKHNARSV 269
Query: 341 MYQAGTLSGNPLAMTAGIHTLKRLK----EPGTYEYLNKITGELTQGIIDAG---KKAGH 393
M+ A A A TLK L+ EP E L K T ++D G
Sbjct: 270 MFSASM----TPASVAS--TLKALEIIQNEPEHIEKLWKNTDYAKAQLLDHGFDLGATES 323
Query: 394 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEA---GF 450
I P++ +K T + + ++GV+ P A
Sbjct: 324 PIL---------------PIF-IRSNEK--TFWVTK---MLQDDGVFVNPVVSPAVPAEE 362
Query: 451 T------SLAHSSDDIQHTITAAEKVLRQI 474
+ H+ D I I KV +Q
Sbjct: 363 SLIRFSLMATHTYDQIDEAIEKMVKVFKQA 392
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 50.3 bits (121), Expect = 7e-07
Identities = 58/269 (21%), Positives = 81/269 (30%), Gaps = 57/269 (21%)
Query: 231 NDVSALENLFENNKGEIAAIIL-EPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV- 288
NDV+ L L + +I E V G P + I I +E GAL DEV
Sbjct: 162 NDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVH 217
Query: 289 MTGFRLAYG----GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPAG 339
G YG G E G+ + TL K G G Y +++ V
Sbjct: 218 AVGM---YGPRGAGVAERDGLMHRIDIFNGTLAKAYGV---FGGYIAASARMVDAVRSYA 271
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI---TGELTQGIIDAG---KKAGH 393
P + T S P ++ LK + + L + G G
Sbjct: 272 PGFIFST-SLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIIDHGS 330
Query: 394 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAG- 449
I PV D T + + + GVY P F G
Sbjct: 331 HIV---------------PVV-IGDPVH--TKAVSD--MLLSDYGVYVQPINFPTVPRGT 370
Query: 450 ----FT-SLAHSSDDIQHTITAAEKVLRQ 473
FT S H I + A + + +
Sbjct: 371 ERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 49.9 bits (120), Expect = 9e-07
Identities = 40/263 (15%), Positives = 79/263 (30%), Gaps = 50/263 (19%)
Query: 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV-M 289
N+ L L + + I I+++ + G IAP L + I+KE G L+ DE
Sbjct: 173 NNCDHLRMLIQRHGPGI--IVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHS 226
Query: 290 TGFRLAYG-GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPAGPMYQ 343
G G G G+T ++ +L K ++ V
Sbjct: 227 LGTHGPNGAGLLAELGLTREVHFMTASLAKTFAY---RAGAIWCNNEVNRCVPFISYPAI 283
Query: 344 AGTLSGNPLAMTAGIHTLKRLK-EPGTYEYLNKITGELTQGIIDAGKKAG--HAICGGYI 400
+ + P TL+ ++ ++L+++ +L G+ G I
Sbjct: 284 FSS-TLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGLTIRSESQII---- 338
Query: 401 SGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQF---EAG-----FT- 451
+ D + T K + + GV+ + +
Sbjct: 339 -----------GLE-TGDERN--TEKVRDY---LESNGVFGSVFCRPATSKNKNIIRLSL 381
Query: 452 SLAHSSDDIQHTITAAEKVLRQI 474
+ + + I I +
Sbjct: 382 NSDVNDEQIAKIIEVCSDAVNYG 404
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 49.8 bits (120), Expect = 1e-06
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 12/109 (11%)
Query: 231 NDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV-M 289
NDV+ L L + ++ E V G AP L I+++T+++ L+ D+
Sbjct: 153 NDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHG 208
Query: 290 TGFRLAYG-GAQEYFGVTPDLT--TLGKIIGGGLPVGAY-GGRRDIMEM 334
TG G G+ V P+L T GK G GA + +
Sbjct: 209 TGVIGEQGRGSCWLQKVKPELLVVTFGKGFGV---SGAAVLCSSTVADY 254
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 47.2 bits (113), Expect = 7e-06
Identities = 60/270 (22%), Positives = 97/270 (35%), Gaps = 56/270 (20%)
Query: 231 NDVSALENLFENNKGEIAAIILEPVVGNS-----GFIAPKPDFLNAIRRITKENGALLIF 285
N + LE + + A L + + G IA L +I + + AL++
Sbjct: 157 NAMGDLEAKLKEADEKGARFKL--IATDGVFSMDGIIAD----LKSICDLADKYNALVMV 210
Query: 286 DEV-MTGFRLAYG-GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPA 338
D+ GF G G EY GV + TLGK +GG G Y G ++I+E +
Sbjct: 211 DDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGA--SGGYTSGHKEIIEWLRNR 268
Query: 339 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTY--EYLNKITGELTQGIIDAG---KKAGH 393
Y + P+ + + L+ LK G + L + + G+ G H
Sbjct: 269 SRPYLFSN-TVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKLGFQLVPGNH 327
Query: 394 AICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY---FAPSQFEAG- 449
I PV DA+ T A +L+EG+Y F+ G
Sbjct: 328 PII---------------PVM-LGDAQL--ATNMADH---LLQEGIYVVGFSYPVVPMGK 366
Query: 450 ----FT-SLAHSSDDIQHTITAAEKVLRQI 474
S H+ + I A +V +++
Sbjct: 367 ARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 9e-06
Identities = 43/247 (17%), Positives = 69/247 (27%), Gaps = 89/247 (36%)
Query: 223 YETLTAPFNDV--SALENLFENNKGEIAAIILE-PVVGNSGFIAPKPDFLNAIRRITKEN 279
Y+T A DV A + + I I++ PV F K +RI +EN
Sbjct: 1636 YKTSKA-AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG------KRI-REN 1687
Query: 280 GALLIFDEVMTGFRLAYGGAQEYF-GVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA 338
+ +IF+ ++ G ++ F + T+
Sbjct: 1688 YSAMIFETIVDGKLKT----EKIFKEINEHSTSY--TFRS------------------EK 1723
Query: 339 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKK-AGH---- 393
G + T P + LK +G+I A AGH
Sbjct: 1724 GLLSA--TQFTQPALTLMEKAAFEDLKS---------------KGLIPADATFAGHSLGE 1766
Query: 394 --AIC--GGYISGMFGFFFTEGPVYNFEDAKKSETTKFAR--FYRGMLEEGVYFAPSQFE 447
A+ +S E FYRGM + A + E
Sbjct: 1767 YAALASLADVMS--------------IESL--------VEVVFYRGMT---MQVAVPRDE 1801
Query: 448 AGFTSLA 454
G ++
Sbjct: 1802 LGRSNYG 1808
Score = 41.6 bits (97), Expect = 6e-04
Identities = 75/390 (19%), Positives = 116/390 (29%), Gaps = 158/390 (40%)
Query: 12 LGLSCSSKLTNRFSSSAGSSRCSVKMSVSVEEQRKNFTLKKSEEAF--NVAK--ELMPG- 66
LG + +L + + G S+ + +V++ E S E+F +V K ++
Sbjct: 256 LGFT-PGELRSYLKGATGHSQ-GLVTAVAIAET-------DSWESFFVSVRKAITVLFFI 306
Query: 67 GVNSPVRAFKSVGGQP-IVFDSVKG-----SHMWDIDG------NEYIDYVGSWGPAIIG 114
GV A+ + P I+ DS++ S M I +Y++ S PA
Sbjct: 307 GVRC-YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA--- 362
Query: 115 HADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRL 174
QV +L +N +V+S P + + LR
Sbjct: 363 --GKQVEISL---------VNGA---KN----LVVSG-PPQSLYGLNLT--------LRK 395
Query: 175 ARAFTG--------RERIIKFEGC-------YHGHADPFLVKAGSGVAT----------- 208
A+A +G ER +KF +H LV A +
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH---SHLLVPASDLINKDLVKNNVSFNA 452
Query: 209 --LGLPDSPGVPKGATYETLTAPFNDV-----SALENLFENNKGEIAAIILEPVVGNSGF 261
+ +P V Y+T +D+ S E + + II PV
Sbjct: 453 KDIQIP----V-----YDTFDG--SDLRVLSGSISERIVD-------CIIRLPV------ 488
Query: 262 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLP 321
+ + A I D F G G L L G
Sbjct: 489 -----KWETTTQ-----FKATHILD-----F-----GP----GGASGLGVLTHRNKDGT- 523
Query: 322 VGAYGGRRDIMEMVAPAGPMYQAGTLSGNP 351
G R I AGTL NP
Sbjct: 524 -----GVRVI-----------VAGTLDINP 537
Score = 36.2 bits (83), Expect = 0.025
Identities = 45/253 (17%), Positives = 64/253 (25%), Gaps = 95/253 (37%)
Query: 195 ADPFLVKAGSGVATLGLP------DSP-------GVPKG----ATYETLT-APFNDVSA- 235
AD T G ++P G KG Y + D
Sbjct: 1649 ADNHFKD------TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK 1702
Query: 236 LENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN--------------AIRRITKENGA 281
E +F+ + F + K L+ A K G
Sbjct: 1703 TEKIFKEINEHSTSYT---------FRSEK-GLLSATQFTQPALTLMEKAAFEDLKSKG- 1751
Query: 282 LLIFDEVMTGFRLAYGGAQEYF------GVTP--DLTTL----GKIIGGGLPVGAYGGRR 329
L+ D G L G EY V L + G + +P G R
Sbjct: 1752 LIPADATFAGHSL---G--EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELG--R 1804
Query: 330 DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGEL--------- 380
M+A NP + A + + L+ E + K TG L
Sbjct: 1805 SNYGMIA------------INPGRVAASF-SQEALQY--VVERVGKRTGWLVEIVNYNVE 1849
Query: 381 -TQGIIDAGKKAG 392
Q + AG
Sbjct: 1850 NQQYVA-AGDLRA 1861
Score = 35.4 bits (81), Expect = 0.042
Identities = 57/360 (15%), Positives = 94/360 (26%), Gaps = 129/360 (35%)
Query: 24 FSSSAGSSRCSVKMSVSV----EEQRKNF--TLKKSEEAFNVAKELMPGGVNSPVRAFKS 77
+ S GS + + + + ++ F L + E F E P +P
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE--P---TTPA----- 58
Query: 78 VGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWG-PAIIGHADDQVLAALGETMKKGTSFGA 136
+ +++ YV S P+ +G D + L E F
Sbjct: 59 --------------ELV----GKFLGYVSSLVEPSKVGQFDQVLNLCLTE-------FEN 93
Query: 137 PCLLEN----VLAEMVISAVPSIEMVRFVNSGTEACMGVLR---LARAFTGRERIIKFEG 189
L N + A+++ ++ + + ++ AR R
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKEL----------IKNYITARIMAKRPF------ 137
Query: 190 CYHGHADPFLVKAGSGVATL----GLPDSPGVPKG-------------ATYETLTAPFND 232
G G A L G G +G TY L
Sbjct: 138 -DKKSNSALFRAVGEGNAQLVAIFG-----G--QGNTDDYFEELRDLYQTYHVLVGDLIK 189
Query: 233 VSA--LENLFENN--------KG-EIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGA 281
SA L L +G I + P P D+L +I
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN------TPDKDYLLSI--------P 235
Query: 282 L---LIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA 338
+ LI + Y + G TP L + G ++ VA A
Sbjct: 236 ISCPLIG---VIQL-AHYVVTAKLLGFTPG--ELRSYLKGATGHSQ-----GLVTAVAIA 284
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 45.2 bits (106), Expect = 4e-05
Identities = 36/242 (14%), Positives = 67/242 (27%), Gaps = 34/242 (14%)
Query: 140 LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFL 199
L++ E+ + + + + G A + + +++ K + F
Sbjct: 81 LKDKAKELF-----NYDYIIPAHQGRGAENILFPVLLK--YKQKEGKAKNPVFISNFHFD 133
Query: 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFN---DVSALENLFENNKGEIAAIILEPVV 256
A + K ET + D+ L+ + + I+ V
Sbjct: 134 TTAAHVELNGCKAINIVTEKAFDSET-YDDWKGDFDIKKLKENIAQHGADNIVAIVSTVT 192
Query: 257 GNSGFIAPKP-DFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFG--------VTP 307
NS P L + I K++G ++ D AY V
Sbjct: 193 CNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARF-CENAYFIKARDPKYKNATIKEVIF 251
Query: 308 DLTTLGKII------GGGLPVGAYGGRRDIMEM-------VAPAGPMYQAGTLSGNPLAM 354
D+ + L +G RD E+ P G L+G +A
Sbjct: 252 DMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAA 311
Query: 355 TA 356
Sbjct: 312 MV 313
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 41.0 bits (97), Expect = 7e-04
Identities = 93/449 (20%), Positives = 150/449 (33%), Gaps = 139/449 (30%)
Query: 84 VFDSVKGSHMWDIDGNEYI-----DYVGSWGPAIIGHADDQVLAALGETMKK-GTSFGAP 137
+ S + + + DG+ I +Y+G + H ++AA M G +
Sbjct: 30 IITSAQQADITVADGSHVINFCANNYLG-----LANH--PDLIAAAKAGMDSHGFGMAS- 81
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVL--RLARAFTGRERIIKFEGCYHGHA 195
VRF+ GT+ L +LA AF G E I + C+
Sbjct: 82 --------------------VRFIC-GTQDSHKELEQKLA-AFLGMEDAILYSSCFD--- 116
Query: 196 DPFLVKAGSGV--ATLGLPD------------------SPGVPKGATYETLTAPFNDVSA 235
A G+ LG D A + ND+
Sbjct: 117 ------ANGGLFETLLGAEDAIISDALNHASIIDGVRLC-----KA--KRYRYANNDMQE 163
Query: 236 LENLFENNKGEIAAIILEPVVGNS-----GFIAPKPDFLNAIRRITKENGALLIFDEV-M 289
LE + + A +L + + G IA L + + + AL++ D+
Sbjct: 164 LEARLKEAREAGARHVL--IATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHA 217
Query: 290 TGFRLAYG-GAQEYFGVTPDLT----TLGKIIGGGLPVGAY-GGRRDIMEMVAPAGPMYQ 343
GF G G+ EY V + TLGK +GG G Y R++++E + Q
Sbjct: 218 VGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGAS--GGYTAARKEVVEW------LRQ 269
Query: 344 AG-----TLSGNPLAMTAGIHTLKRLK-EPGTYEYLNKITGELTQGIIDAG---KKAGHA 394
+ S P + A I L+ ++ + L + + + AG A HA
Sbjct: 270 RSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTLAGADHA 329
Query: 395 ICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVY---FAPSQFEAGFT 451
I PV DA KFAR + +EG+Y F G
Sbjct: 330 II---------------PVM-LGDAVV--AQKFARE---LQKEGIYVTGFFYPVVPKGQA 368
Query: 452 ------SLAHSSDDIQHTITAAEKVLRQI 474
S AH+ + I + A ++ +Q+
Sbjct: 369 RIRTQMSAAHTPEQITRAVEAFTRIGKQL 397
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 40.5 bits (94), Expect = 0.001
Identities = 20/142 (14%), Positives = 42/142 (29%), Gaps = 9/142 (6%)
Query: 146 EMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSG 205
E + + + + + G A + + + + G + + +
Sbjct: 81 ERTVQELFGFKHIVPTHQGRGAENLLSQ---LAIKPGQYV--AGNMYFTTTRYHQEKNGA 135
Query: 206 VATLGLPDSPGVPKGATYETLTAPFNDVSALENLF-ENNKGEIAAIILEPVVGNSGFIAP 264
V D+ L+ L E IA I L V +G
Sbjct: 136 VFVDI--VRDEAHDAGLNIAFKGDI-DLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPV 192
Query: 265 KPDFLNAIRRITKENGALLIFD 286
+ A+R +T+ +G + +D
Sbjct: 193 SMANMRAVRELTEAHGIKVFYD 214
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 31.9 bits (72), Expect = 0.47
Identities = 38/290 (13%), Positives = 67/290 (23%), Gaps = 46/290 (15%)
Query: 140 LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT--GRERIIKFEGCYHGHADP 197
L + + + + G + ++
Sbjct: 79 LAESVKNIF-----GYQYTIPTHQGR---GAEQIYIPVLIKKREQEKGLDRSKMVAFSNY 130
Query: 198 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFN---DVSALENLFENNKGE-IAAIILE 253
F G K A + F D+ LE E + I+
Sbjct: 131 FFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVAT 190
Query: 254 PVVGNSGFIAPKP-DFLNAIRRITKENGALLIFDEVMTGFRLAY---GGAQEYFGVTP-- 307
+ NS P L A+ I K+ ++ D AY EY T
Sbjct: 191 -ITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARF-AENAYFIKQREAEYKDWTIEQ 248
Query: 308 ---------DLTTLGKIIGGGLPVGAY--GGRRDIME-------MVAPAGPMYQAGTLSG 349
D+ + +P+G + + G L G
Sbjct: 249 ITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEG 308
Query: 350 -NPLAMTAGI---HTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAI 395
+ G+ L L + + L + + + GHA
Sbjct: 309 GAMERLAVGLYDGMNLDWLAY--RIAQVQYLVDGLEEIGVVCQQAGGHAA 356
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 31.8 bits (72), Expect = 0.51
Identities = 20/120 (16%), Positives = 29/120 (24%), Gaps = 20/120 (16%)
Query: 264 PKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVG 323
P F+ + GA + FD GG LG I +
Sbjct: 224 ASPTFMQDLTEALVSTGATIAFDAT--------GGG-----------KLGGQILTCMEAA 264
Query: 324 AYG-GRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQ 382
R +Y G L +P + + +L KI E
Sbjct: 265 LNKSAREYSRYGSTTHKQVYLYGGLDTSPTEFNRNFGMAWGMGGWLLFPFLQKIGRERAN 324
>3f79_A Probable two-component response regulator; adaptor, signaling
protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A
Length = 255
Score = 29.5 bits (67), Expect = 1.9
Identities = 9/63 (14%), Positives = 14/63 (22%), Gaps = 16/63 (25%)
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP-GVPKGATYETLTA 228
L + GH ++ L P G+ ATY+
Sbjct: 140 NSLTYSIG---------------GHLPLPVLFVEGQAGYLEGRGLPVGLFDDATYDDRVM 184
Query: 229 PFN 231
Sbjct: 185 ELP 187
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese
binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus
subtilis} PDB: 3t9q_A*
Length = 242
Score = 29.2 bits (66), Expect = 2.4
Identities = 6/64 (9%), Positives = 15/64 (23%), Gaps = 17/64 (26%)
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSP-GVPKGATYETLTA 228
+ + G F+ + V + + P G+ E ++
Sbjct: 105 ASCKFLKV---------------GSTPSFIKRGD-QVMKVQASNLPIGIINEFDVEVVSE 148
Query: 229 PFND 232
Sbjct: 149 QLKA 152
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor,
translation, antitumor protein; 1.15A {Mus musculus}
SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Length = 129
Score = 28.2 bits (63), Expect = 2.7
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDI 460
E V E +S + + + Q + G+ + + DI
Sbjct: 42 LVYEAIVMVLESTGESAFKMILDLLKSLWKSST-ITIDQMKRGYERIYNEIPDI 94
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor
antagonist, phosphatase serine kinase, ATPase, unknown
function; 2.60A {Mycobacterium tuberculosis}
Length = 399
Score = 29.3 bits (66), Expect = 3.2
Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 15/61 (24%)
Query: 170 GVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAP 229
G + A GH P LV A + + + + G + +
Sbjct: 132 GEFQYCTA---------------GHPPPLLVTADASARYVEPTGAGPLGSGTGFPVRSEV 176
Query: 230 F 230
Sbjct: 177 L 177
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein
interaction,; HET: PEG; 1.75A {Moorella thermoacetica}
Length = 193
Score = 28.0 bits (63), Expect = 4.6
Identities = 5/38 (13%), Positives = 10/38 (26%)
Query: 193 GHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPF 230
G+ ++ A + L P G +
Sbjct: 102 GNIHVKILSAKGIITPLATPGILGYNYPHQLLIAKGSY 139
>3erv_A Putative C39-like peptidase; structural genomics, unknown function,
PSI-2, protein structure initiative; 2.10A {Bacillus
anthracis}
Length = 236
Score = 28.2 bits (62), Expect = 5.7
Identities = 15/120 (12%), Positives = 34/120 (28%), Gaps = 7/120 (5%)
Query: 243 NKGEIAAIILE-PVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQE 301
+K ++A I + + + P F+ I T ++ + Y +
Sbjct: 67 DKMKLANEIKKVDFMNDGVRGNPNEGFVGNIY--TFSESGYGVYHGPLFQLAKKYLPNKA 124
Query: 302 YFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 361
+ L K + G PV + + +++T H +
Sbjct: 125 VDLTGKSIEELYKSVKAGQPVVIITN----ATFAPLDEDEFTTWETNNGDVSITYNEHCV 180
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor
protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB:
2ios_A 2iol_A
Length = 152
Score = 27.5 bits (61), Expect = 6.2
Identities = 8/54 (14%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 407 FFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDI 460
E V E +S + + + Q + G+ + + DI
Sbjct: 44 LVYEAIVMVLESTGESAFKMILDLLKSLWKSST-ITIDQMKRGYERIYNEIPDI 96
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A
{Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 28.0 bits (63), Expect = 7.2
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 25/108 (23%)
Query: 220 GATYETLTAPFN---DVSALENLFENNKGEIAAIILEPVVGN---SGFIAPKPDFLNAIR 273
+ P+N D A+ ++ + + EI + V + SG I P ++AI
Sbjct: 106 SPHLLEIEVPYNEAIDPQAVADMLKAHP-EITVVS---VCHHDTPSGTINP----IDAIG 157
Query: 274 RITKENGALLIFDEVMT-----------GFRLAYGGAQEYFGVTPDLT 310
+ +GA LI D V + + G + G P LT
Sbjct: 158 ALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLT 205
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 27.9 bits (63), Expect = 7.9
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 383 GIIDAGKKAGHA--ICGGYISGMFGFFF 408
++ K GH I GG G+++
Sbjct: 354 KAVEEAKATGHIKVITGGEKRKGNGYYY 381
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron
transport, metal-binding, transport; 1.40A {Phormidium
laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A
1baw_A 3bqv_A
Length = 105
Score = 26.4 bits (58), Expect = 8.6
Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 337 PAGPMYQAGTLSGNPLAMTAGI---HTLKRLKEPGTYEY 372
P A LS + L + G T GTY Y
Sbjct: 49 PGASKELADKLSHSQLMFSPGESYEITFSSDFPAGTYTY 87
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 27.6 bits (62), Expect = 9.8
Identities = 13/102 (12%), Positives = 24/102 (23%), Gaps = 23/102 (22%)
Query: 266 PDFLNAIRRITKENGALLIFDEV-------------MTGFRLAYGGAQEYFGVTPDLTTL 312
PDF +R + K + D V + YG +
Sbjct: 219 PDFEATLREVMKAEQPRIFLDAVTGPLASAIFNAMPKRARWIIYGRLD---PDATVIREP 275
Query: 313 GKIIGGGLPVGAYGGRR-------DIMEMVAPAGPMYQAGTL 347
G++I + + + A + G
Sbjct: 276 GQLIFQHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSDGRW 317
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.400
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,610,204
Number of extensions: 503497
Number of successful extensions: 1378
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1193
Number of HSP's successfully gapped: 84
Length of query: 474
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 377
Effective length of database: 3,993,456
Effective search space: 1505532912
Effective search space used: 1505532912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)