RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 011959
(474 letters)
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 416 bits (1069), Expect = e-143
Identities = 308/427 (72%), Positives = 359/427 (84%)
Query: 48 FTLKKSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGS 107
F KS+E F A++LMPGGV+SPVRAFKSVGGQPIVFD VK ++ WD+DGN YIDYVG+
Sbjct: 1 FKTIKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGT 60
Query: 108 WGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEA 167
WGPAI GHA +V+ AL M+KGTSFGAPC LENVLAEMV AVPSIEMVRFVNSGTEA
Sbjct: 61 WGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEA 120
Query: 168 CMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLT 227
CM VLRL RA+TGR++IIKFEGCYHGHAD FLVKAGSGVATLGLP SPGVPK T TLT
Sbjct: 121 CMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLT 180
Query: 228 APFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDE 287
P+ND+ A++ LF N GEIA +ILEP+VGNSGFI P FL +R IT E+ ALL+FDE
Sbjct: 181 TPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDE 240
Query: 288 VMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTL 347
VMTGFR+AYGG QE FGVTPDLTTLGKIIGGGLPVGAYGG+R+IM++VAPAGPMYQAGTL
Sbjct: 241 VMTGFRIAYGGVQEKFGVTPDLTTLGKIIGGGLPVGAYGGKREIMQLVAPAGPMYQAGTL 300
Query: 348 SGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFF 407
SGNPLAMTAGI TL+ L++PGTYEYL++IT L+ G++ ++ GHA CGG +SGMFGFF
Sbjct: 301 SGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFF 360
Query: 408 FTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAA 467
FTEGPV+N+EDAKKS+ KF+RF+RGMLE+G+Y APSQFEAGFTSLAH+ +DI T+ AA
Sbjct: 361 FTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFEAGFTSLAHTEEDIDATLAAA 420
Query: 468 EKVLRQI 474
V+ +
Sbjct: 421 RTVMSAL 427
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 251 bits (642), Expect = 2e-79
Identities = 110/439 (25%), Positives = 171/439 (38%), Gaps = 33/439 (7%)
Query: 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPA 111
++E + +P GV PI D + +WD++G EY+D+ G
Sbjct: 2 SNKELMQRRSQAIPRGVGQI---------HPIFADRAENCRVWDVEGREYLDFAGGIAVL 52
Query: 112 IIGHADDQVLAALGETMKKGT---SFGAPCLLENVLAEMVISAVPSIEM--VRFVNSGTE 166
GH +V+AA+ +KK + L E++ VP V +G+E
Sbjct: 53 NTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSE 112
Query: 167 ACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAG------SGVATLGLPDSPGVPKG 220
A +++ARA T R I F G YHG L G +G+ + +
Sbjct: 113 AVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPC 172
Query: 221 ATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENG 280
+ + +IAAI++EPV G GF A P F+ +R + E+G
Sbjct: 173 PLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHG 232
Query: 281 ALLIFDEVMTG-FRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAG 339
+LI DEV +G R A E GV PDLTT K I GG P+ GR ++M+ VAP G
Sbjct: 233 IMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAEVMDAVAPGG 292
Query: 340 PMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGY 399
GT +GNP+A A + LK ++ + N + +L G++ +K
Sbjct: 293 ---LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRG 349
Query: 400 ISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG----FTSLAH 455
+ M E +N DAK A ++G+ L
Sbjct: 350 LGAMIAIELFEDGDHNKPDAK-----LTAEIVARARDKGLILLSCGPYYNVLRILVPLTI 404
Query: 456 SSDDIQHTITAAEKVLRQI 474
I+ + + +
Sbjct: 405 EDAQIRQGLEIISQCFDEA 423
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 217 bits (554), Expect = 9e-67
Identities = 82/404 (20%), Positives = 148/404 (36%), Gaps = 33/404 (8%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT-SFGAPCLL 140
P+V KG ++D++ Y D++ ++ GH +L A+ K T A +
Sbjct: 22 PVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSV 81
Query: 141 ENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV 200
+ E ++ + + V +N+G EA +L R + + +
Sbjct: 82 PLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYE----VKKIPENMAKIVVCK 137
Query: 201 KAGSGVATLGLPDSPGVPKGATYE-----TLTAPFNDVSALENLFENNKGEIAAIILEPV 255
SG + S + + P++D+ ALE ++ + A I+EP+
Sbjct: 138 NNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKD--PNVCAFIVEPI 195
Query: 256 VGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGK 314
G +G I P ++L + I K+ L + DEV TG R ++ V PD+ LGK
Sbjct: 196 QGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGK 255
Query: 315 IIGGG-LPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 373
+ GG P+ A DIM ++ P T GNPLA + + L L E
Sbjct: 256 ALSGGHYPISAVLANDDIMLVIKPGE---HGSTYGGNPLAASICVEALNVLINEKLCENA 312
Query: 374 NKITGELTQGIIDAGKKAGHAICGGYISG---MFGFFFTEGPVYNFEDAKKSETTKFARF 430
K+ G + + K + + G + F V + K +
Sbjct: 313 EKLGGPFLENLKRELKDSKIV---RDVRGKGLLCAIEFKNELVNVLDICLKLKENGL--I 367
Query: 431 YRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
R + ++ + P L + + + K ++
Sbjct: 368 TRDVHDKTIRLTP--------PLCITKEQLDECTEIIVKTVKFF 403
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 216 bits (550), Expect = 3e-66
Identities = 88/396 (22%), Positives = 160/396 (40%), Gaps = 22/396 (5%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P+ + KG ++WD++G +Y D++ S GH +++ AL + K T
Sbjct: 24 PVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNN 83
Query: 142 NV-LAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKF-EGCYHGHADPFL 199
+ E I+ + + V +N+G EA +LAR + + I+ + A F
Sbjct: 84 VLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFW 143
Query: 200 VKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNS 259
+ S +++ P S P+ND+ ALE ++ +AA ++EP+ G +
Sbjct: 144 GRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQD--PNVAAFMVEPIQGEA 201
Query: 260 GFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGVTPDLTTLGKIIGG 318
G + P P +L +R + + L I DE+ TG R A +Y V PD+ LGK + G
Sbjct: 202 GVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSG 261
Query: 319 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITG 378
GL + D + + P T GNPL I L+ L+E E +K+
Sbjct: 262 GLYPVSAVLCDDDIMLTIK--PGEHFSTYGGNPLGCRVAIAALEVLEEENLAENADKLGI 319
Query: 379 ELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEG 438
L ++ A+ G + K+++ + + + G
Sbjct: 320 ILRNELMKLPSDVVTAVRG--KGLLNAIVI-----------KETKDWDAWKVCLRLRDNG 366
Query: 439 VYFAPSQFEAGFTS--LAHSSDDIQHTITAAEKVLR 472
+ P+ + + L D+++ +I K +
Sbjct: 367 LLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTIL 402
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 212 bits (540), Expect = 8e-65
Identities = 111/420 (26%), Positives = 177/420 (42%), Gaps = 48/420 (11%)
Query: 60 AKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQ 119
A++ + GV + ++ +G+ +WD +GNEYID VG +G A +GH + +
Sbjct: 7 AEKTLDSGVYNK---------HDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPE 57
Query: 120 VLAALGETMKK--GTSFGAPCLLENVLAEMVISAVPSIEMVRFVN-SGTEACMGVLRLAR 176
V+ A+ + P + + + +P F SGTEA L+ AR
Sbjct: 58 VVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFAR 117
Query: 177 AFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSAL 236
A TGR++ + + G L + + P P V P+NDV AL
Sbjct: 118 AHTGRKKFVAAMRGFSGRTMGSL--SVTWEPKYREPFLPLVE-----PVEFIPYNDVEAL 170
Query: 237 ENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLA 295
+ + E AA+ILEPV G G P+FL A R IT+E GALLI DE+ TG R
Sbjct: 171 KRAVDE---ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG 227
Query: 296 YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMT 355
A E+FG+ PD+ TL K +GGG+P+G R ++ + G T GNPLAM
Sbjct: 228 KRFAFEHFGIVPDILTLAKALGGGVPLGVAVMREEVARSMPKGG---HGTTFGGNPLAMA 284
Query: 356 AGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYN 415
AG+ ++ L+ +E ++ + + + G G+
Sbjct: 285 AGVAAIRYLERTRLWERAAELGPWFMEKLRAIPSPKIREVRG---MGLMVGLE------- 334
Query: 416 FEDAKKSETTKFARFYRGML----EEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVL 471
++ + + +R + + F P L +D++ + A VL
Sbjct: 335 LKEKAAPYIARLEKEHRVLALQAGPTVIRFLP--------PLVIEKEDLERVVEAVRAVL 386
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 164 bits (416), Expect = 1e-46
Identities = 93/415 (22%), Positives = 162/415 (39%), Gaps = 32/415 (7%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLE 141
P++ + KGS ++D DG +D+ A++GH ++++ +GE K + L
Sbjct: 24 PMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSR 83
Query: 142 NV--LAEMVISAVP-SIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPF 198
V LA + + P ++ +++G E+ +R+A+ TG+ I+ F +HG
Sbjct: 84 PVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAA 143
Query: 199 LVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVS----------ALENLFENNKGEIA 248
S P + G T F A + + + G +A
Sbjct: 144 ASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLA 203
Query: 249 AIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTG-FRLAYGGAQEYFGVTP 307
A I EP++ + G I ++ A++R + G LLI DE TG R A + GVTP
Sbjct: 204 AFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTP 263
Query: 308 DLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEP 367
D+ TL K +G GLP+ A I E A T +PL G+ L ++
Sbjct: 264 DILTLSKTLGAGLPLAAIVTSAAIEER-AHELGYLFYTTHVSDPLPAAVGLRVLDVVQRD 322
Query: 368 GTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG---MFGFFFTEGPVYNFEDAKKSET 424
G N + L +G++D ++ G + G + G + K+
Sbjct: 323 GLVARANVMGDRLRRGLLDLMERFDCI---GDVRGRGLLLGVEIVKDR-----RTKEPAD 374
Query: 425 TKFARFYRGMLEEGVYFAPSQFEAGFT------SLAHSSDDIQHTITAAEKVLRQ 473
A+ R + G+ Q L S D+I ++ + + +
Sbjct: 375 GLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIER 429
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 151 bits (381), Expect = 1e-41
Identities = 96/415 (23%), Positives = 160/415 (38%), Gaps = 42/415 (10%)
Query: 82 PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGT--SFGAPC- 138
S +G + DG +D + SW AI G+ Q+ AA+ + + FG
Sbjct: 26 VYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH 85
Query: 139 -LLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFT-----GRERIIKFEGCYH 192
+ ++V +E V +SG+ A +++A + R+R + F YH
Sbjct: 86 APAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYH 145
Query: 193 GHADPFLVKAGSGVATLGL-----PDSPGVPKGATYETLTAPFNDVSALENLFENNKGEI 247
G + + L P++ P + D+ L ++ EI
Sbjct: 146 GDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEI 205
Query: 248 AAIILEPVVGNSG-FIAPKPDFLNAIRRITKENGALLIFDEVMTGF-RLAYGGAQEYFGV 305
AA+I+EP+V +G P++L IR+I G LLI DE+ TGF R A E+ +
Sbjct: 206 AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEI 265
Query: 306 TPDLTTLGKIIGGG-LPVGAYGGRRDIMEMVAP--AGPMYQAGTLSGNPLAMTAGIHTLK 362
PD+ LGK + GG + + A R++ E ++ AG T GNPLA A +L
Sbjct: 266 APDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLA 325
Query: 363 RLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKS 422
L+ + + I +L + + A + + G G T PV
Sbjct: 326 ILESGDWQQQVADIEVQLREQLAPARDA--EMVADVRVLGAIGVVETTHPV--------- 374
Query: 423 ETTKFARFYRGMLEEGVYFAPSQFEAGFT-----SLAHSSDDIQHTITAAEKVLR 472
A + +E+GV+ P G +Q A + ++
Sbjct: 375 ---NMAALQKFFVEQGVWIRP----FGKLIYLMPPYIILPQQLQRLTAAVNRAVQ 422
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 112 bits (280), Expect = 2e-27
Identities = 70/485 (14%), Positives = 126/485 (25%), Gaps = 105/485 (21%)
Query: 52 KSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPA 111
+S E + ++ +G+++ D+DGN +D
Sbjct: 16 RSRELMKQLNIIQNAEAVHF----------FCNYEESRGNYLVDVDGNRMLDLYSQISSI 65
Query: 112 IIGHADDQVLAALGETMKKGTSFGAPCL-------LENVLAEMVIS-AVPSIEMVRFVNS 163
IG++ ++ + + T P L L E ++S A + + +
Sbjct: 66 PIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMAC 125
Query: 164 GTEACMGVLRLARAF--------------------------TGRERIIKFEGCYHGHADP 197
G+ + + + I+ F G +HG
Sbjct: 126 GSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMG 185
Query: 198 FLVKAGSGVATLGLPDSPGVPK--------------GATYETLTAPFNDVSALENLFENN 243
L S S P + +V L +
Sbjct: 186 CLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKK 245
Query: 244 KGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF---RLAYGGAQ 300
K +A II+EP+ G DF +R I++++G + DEV TG +
Sbjct: 246 KKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEH 305
Query: 301 EYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHT 360
D+ T K + G E P P T G+P
Sbjct: 306 WGLDDPADVMTFSKKM--------MTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEV 357
Query: 361 LKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISG---MFGFFFTEGPVYNFE 417
+ +K L G++D + I + G F + + N
Sbjct: 358 INIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFI--SRVRGRGTFCSFDTPDESIRN-- 413
Query: 418 DAKKSETTKFARFYRGMLEEGV----------YFAPSQFEAGFTSLAHSSDDIQHTITAA 467
+ +GV F P +L +
Sbjct: 414 -----------KLISIARNKGVMLGGCGDKSIRFRP--------TLVFRDHHAHLFLNIF 454
Query: 468 EKVLR 472
+L
Sbjct: 455 SDILA 459
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 73.0 bits (178), Expect = 2e-14
Identities = 53/445 (11%), Positives = 109/445 (24%), Gaps = 58/445 (13%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHAD-------DQVLAALGETMKKGTS 133
+P ++ E P ++ D D A+ ++M+
Sbjct: 5 EPFRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMM 64
Query: 134 FGAPCLLE----NVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAF------TGRER 183
G LAE V + + + G A + + R +
Sbjct: 65 RGDEAFSGSRSYYALAESV-KNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSK 123
Query: 184 IIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLF-EN 242
++ F + G V + + ++ ++ D+ LE E
Sbjct: 124 MVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFK----GNFDLEGLERGIEEV 179
Query: 243 NKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEV-------MTGFRLA 295
+ I+ ++G L A+ I K+ ++ D R A
Sbjct: 180 GPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREA 239
Query: 296 YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAP----------AGPMYQAG 345
+T + ++ A ++ M + Q G
Sbjct: 240 EYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEG 299
Query: 346 TLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFG 405
+ L A L + ++L Q ++D ++ G F
Sbjct: 300 FPTYGGLEGGAMERLAVGLYDGMNLDWLAYRI-AQVQYLVDGLEEIGVVCQQAGGHAAFV 358
Query: 406 ---FFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG------------- 449
P F + R + E G + + G
Sbjct: 359 DAGKLLPHIPADQFPAQALACELYKVAGIRAV-EIGSFLLGRDPKTGKQLPCPAELLRLT 417
Query: 450 FTSLAHSSDDIQHTITAAEKVLRQI 474
++ + I A + V
Sbjct: 418 IPRATYTQTHMDFIIEAFKHVKENA 442
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 68.3 bits (165), Expect = 4e-13
Identities = 56/366 (15%), Positives = 92/366 (25%), Gaps = 42/366 (11%)
Query: 116 ADDQVLAALGETMKKGTSFGAP---CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVL 172
+++ A+ + +G LE + AE E FV SGT +
Sbjct: 12 PTEEMRKAMAQAEVGDDVYGEDPTINELERLAAETF-----GKEAALFVPSGTMGNQVSI 66
Query: 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232
+ + +A L VP
Sbjct: 67 MAHTQRGDEVILEADSHIFWYEVG--------AMAVLSGVMPHPVPGKNGAMDPDDVRKA 118
Query: 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292
+ + + I +E SG + + I I KE+G + D
Sbjct: 119 I----RPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFN 174
Query: 293 RLA--YGGAQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGN 350
+EY G + G RD +E A M G
Sbjct: 175 ASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMRQAG 234
Query: 351 PLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTE 410
LA I K K E + + K+ G+++ + T+
Sbjct: 235 VLAAAGIIALTK-------MVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTD 287
Query: 411 GPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAG--FTSLAHSSDDIQHTITAAE 468
N F + GV T S +DI+ + E
Sbjct: 288 NLKVNAHG-----------FIEALRNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFE 336
Query: 469 KVLRQI 474
K+ R+
Sbjct: 337 KLFRKF 342
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 68.4 bits (166), Expect = 5e-13
Identities = 48/412 (11%), Positives = 101/412 (24%), Gaps = 45/412 (10%)
Query: 97 DGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIE 156
YID + G + + E ++ L++ E+ + +
Sbjct: 40 SSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRNYYD---LKDKAKELF-----NYD 91
Query: 157 MVRFVNSGTEACMGVLRLARAF---TGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPD 213
+ + G A + + + G+ + F +H V+ A + +
Sbjct: 92 YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTE 151
Query: 214 SPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIR 273
+ + + ++ I AI+ ++G L +
Sbjct: 152 KAFDSETYDDWKGDFDIKKLKEN--IAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVY 209
Query: 274 RITKENGALLIFDEVMTGFRLAYGG--------------AQEYFGVTPDLTTLGKIIGGG 319
I K++G ++ D + + + LT K
Sbjct: 210 EIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLL 269
Query: 320 LPVGAYGGRRD--IMEMVAPAGPMYQAGTLSGNP--LAMTAGIHTLKRLKEPGTYEYLNK 375
G R + I + + G M A + L+ E Y
Sbjct: 270 NIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIG 329
Query: 376 ITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGML 435
L + +AG + G + + P F R +
Sbjct: 330 QVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAV- 388
Query: 436 EEGVYFAPSQFEAGFTSLAHSS-------------DDIQHTITAAEKVLRQI 474
E G + G A D + + A + +
Sbjct: 389 EIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF 440
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 62.1 bits (150), Expect = 5e-11
Identities = 59/410 (14%), Positives = 116/410 (28%), Gaps = 61/410 (14%)
Query: 84 VFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADD-QVLAALGETMKK-GTSFGAPCLLE 141
+ S + + + DG+ I++ + +G A+ ++AA M G + +
Sbjct: 30 IITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSHGFGMASVRFIC 86
Query: 142 NVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVK 201
++ F+ A G D +
Sbjct: 87 GTQDSHKEL---EQKLAAFLGMEDAILYSSCFDANGGLFE--------TLLGAEDAIISD 135
Query: 202 AGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGF 261
A + + + D + K Y ++ A I + V G
Sbjct: 136 ALNHASII---DGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGV 192
Query: 262 IAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGA--QEYFGVTPD---LTTLGKII 316
I L + + + AL++ D+ + G EY V +T
Sbjct: 193 I----ANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKA 248
Query: 317 GGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKI 376
GG G R++++E + Y + + + L
Sbjct: 249 LGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWAN 308
Query: 377 TGELTQGIIDAG---KKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 433
+ + + AG A HAI I M G + +F R
Sbjct: 309 ARQFREQMSAAGFTLAGADHAI----IPVMLG-----------------DAVVAQKFARE 347
Query: 434 MLEEGVYFAPSQFEAG---------FTSLAHSSDDIQHTITAAEKVLRQI 474
+ +EG+Y + S AH+ + I + A ++ +Q+
Sbjct: 348 LQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397
>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase
(8-amino-7-oxonanoate synthase, AONS) {Escherichia coli
[TaxId: 562]}
Length = 383
Score = 49.5 bits (117), Expect = 4e-07
Identities = 47/413 (11%), Positives = 103/413 (24%), Gaps = 74/413 (17%)
Query: 81 QPIVFDSVKGSHMWDIDGNEYI-----DYVGSWGPAIIGHADDQVLAALGETMKK-GTSF 134
+ G + D +Y+ DY+G + H Q++ A + ++ G
Sbjct: 21 RRYPVAQGAGRWL-VADDRQYLNFSSNDYLG------LSH-HPQIIRAWQQGAEQFGIGS 72
Query: 135 GAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGH 194
G V+ + + + G R + F + +
Sbjct: 73 GGS---------------------GHVSGYSVVHQALEEELAEWLGYSRALLFISGFAAN 111
Query: 195 ADPFLVKAGSGVATLGLPDSPGVPKGATYET----LTAPFNDVSALENLFENNKGEIAAI 250
S A + NDV+ L L + +
Sbjct: 112 QAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMV 171
Query: 251 ILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL--AYGGAQEYFGVTPD 308
+ E V G AP + +++T+++ L+ D+ + G+ V P+
Sbjct: 172 VTEGVFSMDGDSAPLAEI----QQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPE 227
Query: 309 LTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPG 368
L + G G+ A + + + T + +
Sbjct: 228 LLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPA--QAQALRASLAVIRSD 285
Query: 369 TYEYLNKITGELTQGIIDAGKKAGHAICGG--YISGMFGFFFTEGPVYNFEDAKKSETTK 426
+ + L + + I + V + A +
Sbjct: 286 EGDARREKLAALITRFRAGVQDLPFTLADSCSAIQPLI--------VGDNSRALQ----- 332
Query: 427 FARFYRGMLEEGVYFAPSQFEAG---------FTSLAHSSDDIQHTITAAEKV 470
+ ++G + + + AH DI +
Sbjct: 333 ---LAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 382
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 48.7 bits (114), Expect = 8e-07
Identities = 44/364 (12%), Positives = 73/364 (20%), Gaps = 39/364 (10%)
Query: 113 IGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVL 172
I A +V AL + L + V V +GT A L
Sbjct: 12 IAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCL 71
Query: 173 RLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFND 232
G + +
Sbjct: 72 SAMTPPWGNIYCHPASHINNDECGAPEFFSN-----------GAKLMTVDGPAAKLDIVR 120
Query: 233 VSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGF 292
+ + + D + AI + K + L D
Sbjct: 121 LRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFAN 180
Query: 293 RLAYGG---AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSG 349
L G A+ + D + G G L A + S
Sbjct: 181 ALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGHLSSK 240
Query: 350 NPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFT 409
L N L QG+ G + GG + +
Sbjct: 241 MRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLE---GLGGVEVLGGTEANILFCRLD 297
Query: 410 EGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGF----TSLAHSSDDIQHTIT 465
+L+ G F ++ TS A +++D+ H +
Sbjct: 298 S------------------AMIDALLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLN 339
Query: 466 AAEK 469
Sbjct: 340 QVRL 343
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 48.0 bits (113), Expect = 1e-06
Identities = 35/340 (10%), Positives = 87/340 (25%), Gaps = 24/340 (7%)
Query: 138 CLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADP 197
L N + E + T + + A ++ + H
Sbjct: 112 YALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIK 171
Query: 198 FLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVG 257
+ G + + V G V +EN + + +
Sbjct: 172 AVSFVGMNMRLV-----ETVLDGDRVYV------PVEDIENAIKKEIELGNRPCVLSTLT 220
Query: 258 NSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEY---FGVTPDLTTLGK 314
+ I +I + I + Y + + V +++ K
Sbjct: 221 FFPPRNSDD--IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDK 278
Query: 315 IIGGGLPVGA-YGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYL 373
+ + G Y + ++ ++ + P + + + + ++ +
Sbjct: 279 NLLTPIGGGLVYSTDAEFIKEISLSYPGRAS---ATPVVNTLVSLLSMGSKNYLELVKNQ 335
Query: 374 NKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRG 433
L + + D KK G PV T R +
Sbjct: 336 KNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGP-RGIKK 394
Query: 434 MLEEGVYFAPSQFEAGFT---SLAHSSDDIQHTITAAEKV 470
G + + ++ ++DI ++++ EK+
Sbjct: 395 TDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKI 434
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 35.7 bits (80), Expect = 0.011
Identities = 41/372 (11%), Positives = 84/372 (22%), Gaps = 42/372 (11%)
Query: 103 DYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVP-SIEMVRFV 161
DY P +L + + A ++ + V F+
Sbjct: 7 DYSVGMHPK--------ILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFI 58
Query: 162 NSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGA 221
+ GT+ + LA + G ++ G
Sbjct: 59 SGGTQTNLIACSLALRPWEAVIATQLGHISTHET--------------GAIEATGHKVVT 104
Query: 222 TYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGA 281
++ + ++ L I KE+G
Sbjct: 105 APCPDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGL 164
Query: 282 LLIFDEVMTGFRLAYGG---AQEYFGVTPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPA 338
L D L+ D+ +G GG+ A D ++ A
Sbjct: 165 YLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARH 224
Query: 339 GPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGG 398
+ ++ L +K + NK+ L G+ G +
Sbjct: 225 LIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPSASN 284
Query: 399 YISGMFGFFFTEGPVYNFEDAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSD 458
+ F E + + + E + TS A
Sbjct: 285 QL-----FPILENTMIA----------ELNNDFDMYTVEPLKDGTCIMRLC-TSWATEEK 328
Query: 459 DIQHTITAAEKV 470
+ + +++
Sbjct: 329 ECHRFVEVLKRL 340
>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium
[TaxId: 90371]}
Length = 376
Score = 29.6 bits (65), Expect = 0.90
Identities = 33/205 (16%), Positives = 51/205 (24%), Gaps = 32/205 (15%)
Query: 117 DDQVLAALGETMKKGTSFGAPCL--LENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRL 174
+ LAA+ + G P LE + + V+S T L
Sbjct: 11 GAEELAAVKTVLDSGWITTGPKNQELEAAFCRLT-----GNQYAVAVSSATAGMHIALMA 65
Query: 175 ARAFTGRERIIKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKGATYETLTAPFNDVS 234
G E +I + + ++ + V D+ V
Sbjct: 66 LGIGEGDE-VITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMV--------------TPE 110
Query: 235 ALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLNAIRRITKENGALLIFDEVMTGFRL 294
+E AII G P L+AI + + G +I D
Sbjct: 111 HIEAAITPQ---TKAIIPVHYAGA-------PADLDAIYALGERYGIPVIEDAAHATGTS 160
Query: 295 AYGGAQEYFGVTPDLTTLGKIIGGG 319
G G K I
Sbjct: 161 YKGRHIGARGTAIFSFHAIKNITCA 185
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 29.1 bits (64), Expect = 1.1
Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 4/81 (4%)
Query: 265 KPDFLNAIRRITKENGALLIFDEVMTGFRLAYGGAQEYFGVTPDLTTLGKIIGGGLPVGA 324
L + K+ G ++ F+ +Y E L L K+
Sbjct: 110 PETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDT--QR 167
Query: 325 YGGRRDIMEMVAPAGPMYQAG 345
G +I + + + G
Sbjct: 168 NGKDGNIGMKIPIY--LSELG 186
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 28.7 bits (63), Expect = 1.7
Identities = 23/211 (10%), Positives = 41/211 (19%), Gaps = 29/211 (13%)
Query: 160 FVNSGTEACMGVLRLARAFTGRERIIKFEGCY---------HGHADPFLVKAGSGVATLG 210
+EACM + + + F + +
Sbjct: 120 NTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIP 179
Query: 211 LPDSPGVPKGATYETLTAPFNDVSALENLFENNKGEIAAIILEPVVGNSGFIAPKPDFLN 270
+ F D + + N + GN F P D
Sbjct: 180 MRPGQL-------------FMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHD-AL 225
Query: 271 AIRRITKENGALLIFDEVMTGFRLA-----YGGAQEYFGVTPDLTTLGKIIGGGLPVGAY 325
+ + D GF V + K L G
Sbjct: 226 DKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWV 285
Query: 326 GGR-RDIMEMVAPAGPMYQAGTLSGNPLAMT 355
R + + Y G + + +
Sbjct: 286 IWRDEEALPQELVFNVDYLGGQIGTFAINFS 316
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle
and C-terminal domains {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 324
Score = 27.5 bits (60), Expect = 3.2
Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 173 RLARAFTGRERIIKFEGCY---HGHAD 196
R+ +A R++++K+ Y +G AD
Sbjct: 9 RIKKANEYRKKVLKYTNVYRMVYGEAD 35
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 26.6 bits (57), Expect = 6.5
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 141 ENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIIKFEGCYHGHADPFLV 200
+ V+ A P+ + + +A ++ ER+ + L
Sbjct: 263 AELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNLGHLERVAAIDAALQRLPGLHL- 321
Query: 201 KAGSGVATLGLPD 213
G+ +GL D
Sbjct: 322 -IGNAYKGVGLND 333
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G
{Human (Homo sapiens) [TaxId: 9606]}
Length = 193
Score = 26.0 bits (57), Expect = 8.5
Identities = 7/57 (12%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 418 DAKKSETTKFARFYRGMLEEGVYFAPSQFEAGFTSLAHSSDDIQHTITAAEKVLRQI 474
+ + +L G + +Q+ G + ++D++ I L ++
Sbjct: 55 ERSAIAREHMGQLLHQLLCAGH-LSTAQYYQGLYEILELAEDMEIDIPHVWLYLAEL 110
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.400
Gapped
Lambda K H
0.267 0.0454 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,806,135
Number of extensions: 88993
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 25
Length of query: 474
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 385
Effective length of database: 1,185,626
Effective search space: 456466010
Effective search space used: 456466010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.6 bits)