Query 011960
Match_columns 474
No_of_seqs 217 out of 1224
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:07:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 2.8E-93 6E-98 689.3 21.9 375 1-465 1-427 (443)
2 PLN00221 tubulin alpha chain; 100.0 7.7E-76 1.7E-80 611.5 24.6 376 1-466 1-435 (450)
3 cd06060 misato Human Misato sh 100.0 1.8E-74 4E-79 601.5 30.4 396 2-465 1-493 (493)
4 PTZ00335 tubulin alpha chain; 100.0 8E-74 1.7E-78 596.1 23.7 375 1-465 1-434 (448)
5 PLN00222 tubulin gamma chain; 100.0 1.5E-72 3.2E-77 586.9 24.0 375 1-465 2-440 (454)
6 cd02188 gamma_tubulin Gamma-tu 100.0 2E-72 4.2E-77 583.1 23.0 372 2-463 1-431 (431)
7 PTZ00010 tubulin beta chain; P 100.0 4.6E-72 1E-76 583.6 25.4 375 1-465 1-424 (445)
8 cd02186 alpha_tubulin The tubu 100.0 1.1E-71 2.4E-76 579.6 24.6 374 2-465 1-433 (434)
9 PTZ00387 epsilon tubulin; Prov 100.0 1.1E-71 2.3E-76 580.7 24.2 370 1-465 1-448 (465)
10 PLN00220 tubulin beta chain; P 100.0 3.3E-71 7.1E-76 578.5 24.8 375 1-465 1-424 (447)
11 cd02187 beta_tubulin The tubul 100.0 9E-71 1.9E-75 571.8 25.3 374 2-465 1-423 (425)
12 KOG1374 Gamma tubulin [Cytoske 100.0 6.1E-70 1.3E-74 527.6 21.3 376 1-466 2-439 (448)
13 cd02189 delta_tubulin The tubu 100.0 9.3E-67 2E-71 544.4 26.0 376 4-464 2-445 (446)
14 cd02190 epsilon_tubulin The tu 100.0 3.3E-64 7.2E-69 515.0 22.7 331 2-465 1-378 (379)
15 KOG2530 Members of tubulin/Fts 100.0 4E-61 8.6E-66 475.9 20.2 339 1-374 1-354 (483)
16 cd06059 Tubulin The tubulin su 100.0 7.6E-60 1.6E-64 485.7 23.7 334 3-465 1-382 (382)
17 KOG1376 Alpha tubulin [Cytoske 100.0 1.2E-57 2.7E-62 440.8 14.6 365 1-460 1-406 (407)
18 KOG1375 Beta tubulin [Cytoskel 100.0 9.1E-45 2E-49 353.2 8.3 300 43-465 7-348 (369)
19 cd00286 Tubulin_FtsZ Tubulin/F 100.0 8E-42 1.7E-46 345.7 16.2 229 3-359 1-231 (328)
20 PF00091 Tubulin: Tubulin/FtsZ 100.0 1.3E-38 2.8E-43 303.6 8.6 212 3-296 1-214 (216)
21 PF14881 Tubulin_3: Tubulin do 100.0 1.5E-35 3.3E-40 272.5 14.6 174 130-316 4-180 (180)
22 PF10644 Misat_Tub_SegII: Misa 100.0 3.7E-34 8E-39 244.9 9.2 115 2-122 1-115 (115)
23 smart00864 Tubulin Tubulin/Fts 99.9 5.2E-26 1.1E-30 212.9 8.0 176 62-317 9-191 (192)
24 cd02202 FtsZ_type2 FtsZ is a G 99.9 9.4E-22 2E-26 199.6 13.2 151 167-345 71-227 (349)
25 cd02191 FtsZ FtsZ is a GTPase 99.7 6.7E-17 1.5E-21 161.2 7.8 145 168-344 64-209 (303)
26 TIGR00065 ftsZ cell division p 99.6 1.9E-15 4.1E-20 153.2 7.5 148 167-346 80-228 (349)
27 cd02201 FtsZ_type1 FtsZ is a G 99.5 8E-15 1.7E-19 146.8 7.8 150 167-347 63-213 (304)
28 PRK13018 cell division protein 99.4 1.5E-13 3.3E-18 140.0 8.5 146 167-344 91-237 (378)
29 PRK09330 cell division protein 99.3 3.9E-12 8.5E-17 129.8 6.8 149 167-346 76-225 (384)
30 COG0206 FtsZ Cell division GTP 95.1 0.069 1.5E-06 54.1 7.5 141 181-347 82-223 (338)
31 PF03953 Tubulin_C: Tubulin C- 94.5 0.15 3.4E-06 44.1 7.3 37 386-422 80-126 (126)
32 TIGR00824 EIIA-man PTS system, 80.3 6.3 0.00014 33.5 6.7 37 181-217 41-78 (116)
33 PF13809 Tubulin_2: Tubulin li 78.8 14 0.00031 37.7 9.9 39 201-239 150-194 (345)
34 cd00006 PTS_IIA_man PTS_IIA, P 77.1 7.9 0.00017 33.1 6.4 36 181-216 40-76 (122)
35 PF03610 EIIA-man: PTS system 76.8 5.4 0.00012 33.7 5.2 34 181-214 40-74 (116)
36 PRK14484 phosphotransferase ma 73.3 4.5 9.7E-05 35.0 3.8 42 181-225 41-83 (124)
37 PRK15088 PTS system mannose-sp 55.6 31 0.00068 35.0 6.5 39 181-219 42-81 (322)
38 PF12210 Hrs_helical: Hepatocy 44.0 11 0.00023 30.9 0.8 54 407-465 28-88 (96)
39 TIGR02364 dha_pts dihydroxyace 41.0 29 0.00062 30.1 3.1 30 181-211 41-71 (125)
40 PF12953 DUF3842: Domain of un 38.2 33 0.00072 29.8 3.0 25 212-236 10-35 (131)
41 COG2893 ManX Phosphotransferas 31.6 1.2E+02 0.0025 27.0 5.5 40 181-220 42-82 (143)
42 PF09949 DUF2183: Uncharacteri 28.6 1.4E+02 0.003 24.8 5.1 54 182-235 10-71 (100)
43 PRK09461 ansA cytoplasmic aspa 27.1 2.9E+02 0.0063 28.1 8.3 89 182-278 66-154 (335)
44 PF03358 FMN_red: NADPH-depend 26.9 2.8E+02 0.0062 23.9 7.4 71 182-261 58-133 (152)
45 PF02353 CMAS: Mycolic acid cy 26.5 94 0.002 30.7 4.5 41 181-226 43-84 (273)
46 PF13508 Acetyltransf_7: Acety 25.6 83 0.0018 23.9 3.2 24 212-235 41-64 (79)
47 COG3958 Transketolase, C-termi 24.4 1.2E+02 0.0027 30.2 4.8 44 188-236 237-280 (312)
48 smart00243 GAS2 Growth-Arrest- 22.0 66 0.0014 25.0 1.9 23 183-205 2-24 (73)
49 cd01833 XynB_like SGNH_hydrola 21.0 4E+02 0.0086 22.9 7.1 40 217-261 68-107 (157)
50 KOG3178 Hydroxyindole-O-methyl 20.8 1.1E+02 0.0024 31.2 3.7 43 190-236 167-209 (342)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=2.8e-93 Score=689.29 Aligned_cols=375 Identities=21% Similarity=0.309 Sum_probs=332.8
Q ss_pred CccEEEEecCCchhHHHHHHHHHHHHHcCCCCCCCCCcccccccccccccccccccCCCceeeeeeeeeeccccc-cccc
Q 011960 1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGS-LGSM 79 (474)
Q Consensus 1 MrEIItlq~Gq~gN~IG~hfWn~q~~~~~~~~~~~~~~~~~~~~~~~~v~Fr~g~t~~g~~~y~PR~llvDl~~~-~~sl 79 (474)
||||||||+||||||||+.||+++|.|||+.++|...........+.+|||+ |+.+| +|+||+|+|||||+ ++.+
T Consensus 1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~--e~~~~--k~vPRaI~vDLEP~vid~v 76 (443)
T COG5023 1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFY--EASDG--KFVPRAILVDLEPGVIDQV 76 (443)
T ss_pred CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceee--ecCCC--ccccceEEEecCcchHhhh
Confidence 9999999999999999999999999999999999854433345578999999 88888 99999999999999 5655
Q ss_pred cccccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhcccccccccCCCCCCCCcccccccccccchhcCCCC
Q 011960 80 SSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDISLYELGGLW 159 (474)
Q Consensus 80 ~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~s~~~l~~~~ 159 (474)
+++| +++||+|+| ++.|++++|||||+
T Consensus 77 ---------------------------~~g~------y~~lf~Pen----~i~gkegAgNnwA~---------------- 103 (443)
T COG5023 77 ---------------------------RNGP------YGSLFHPEN----IIFGKEGAGNNWAR---------------- 103 (443)
T ss_pred ---------------------------ccCc------cccccChhh----eeeccccccccccc----------------
Confidence 3577 899999999 99999999999999
Q ss_pred CCCCccccccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeeecC
Q 011960 160 MDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVRS 238 (474)
Q Consensus 160 ~~~~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v~p 238 (474)
|+|+.|+++ .|+++|+|||++|.||.|||||++||++||| |||||.|||.|++|||||.+.+|+|+|
T Consensus 104 ------GhYtvG~e~------~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~eypkK~~~tfSV~P 171 (443)
T COG5023 104 ------GHYTVGKEI------IDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLTFSVFP 171 (443)
T ss_pred ------cccchhHHH------HHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHhcchhheeEEEecc
Confidence 999999999 9999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcCCC
Q 011960 239 PSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEP 318 (474)
Q Consensus 239 ~~~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~~~ 318 (474)
.+ +.+++++||||++|++++|.++||+++++||++|++ +|.+.|++..|+|.|+|+|||++|+++|.++||+
T Consensus 172 ~p------~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~d-i~~~~L~i~~P~y~~lN~LIs~VmSsvTtslRfp- 243 (443)
T COG5023 172 AP------KVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYD-ICRRNLRIQNPSYDDLNQLISTVMSSVTTSLRFP- 243 (443)
T ss_pred CC------ccCcceecccHHHHHHHHHHhcCCceEEechHHHHH-HHHHhcCCCCCChHHHHHHHHHHHHhhhheeecC-
Confidence 87 689999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCCcccccCccChhhHhhccccccccceeeccccCCCCCCCCchhhH----HHHHhcc----------CCCCCCCcC
Q 011960 319 VGPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPALNGKQHE----QSLLGNL----------QPLTPELLN 384 (474)
Q Consensus 319 ~g~~~~~~~~~~~~~l~~~~~~L~~~~r~~~~~~~~~~~p~~~~~~~~~~----~~l~~~~----------~~~tp~~~~ 384 (474)
|. .+++|++|..+|+|+||.|| .+..+.|+.+...+... ..+++++ .|+.+....
T Consensus 244 -G~--------ln~dl~~~~~nLVP~PrlHF--~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~ 312 (443)
T COG5023 244 -GY--------LNVDLRSIQTNLVPYPRLHF--PLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMA 312 (443)
T ss_pred -cc--------ccchHHHHHhcCCCCCcccc--cccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeee
Confidence 66 78999999999999999999 66778888765322222 2233222 232222111
Q ss_pred --------------------------CCcccCCCCCc-cceeccCc---------eeeeecchhhHHHHHHHHHHHhchh
Q 011960 385 --------------------------SPFVGSSPRGS-LEVHSIPM---------AVRLRSSSAILPFLENRLGNLRRYG 428 (474)
Q Consensus 385 --------------------------~~~~~~~~~~~-~~~~sip~---------~~~L~n~t~i~~~~~~~~~~f~~l~ 428 (474)
..|+.|.|.+. .++|++|+ .++|+|+|+|++.|+|+..+|++|+
T Consensus 313 ~~~l~rG~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf 392 (443)
T COG5023 313 VCLLFRGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMF 392 (443)
T ss_pred hhHHHhcCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeecCcHHHHHHHHHhhhHHHHHH
Confidence 25666666665 78898876 4679999999999999999999998
Q ss_pred hhccccccceeeccCCChhhHHHHHHHHHHHHhcccC
Q 011960 429 LQRGALGAELLRNWGFADDELYDMGEMLSKMVSTMKP 465 (474)
Q Consensus 429 ~rr~~~~~~~y~~~G~~~~ef~E~~e~l~~l~~~Y~~ 465 (474)
.||+|| |||+++|||++||.|++|.+++|.++|++
T Consensus 393 ~krAFl--hwY~~egmee~EFsEare~~~~L~~eY~~ 427 (443)
T COG5023 393 KKRAFL--HWYVGEGMEEGEFSEAREDVADLEEEYEA 427 (443)
T ss_pred HhhHHH--HHHhhccCcccchhhHHHHHHHHHHHHHH
Confidence 888877 99999999999999999999999999986
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=7.7e-76 Score=611.52 Aligned_cols=376 Identities=19% Similarity=0.272 Sum_probs=309.6
Q ss_pred CccEEEEecCCchhHHHHHHHHHHHHHcCCCCCCCCCcccc--cccccccccccccccCCCceeeeeeeeeeccccc-cc
Q 011960 1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFR--NQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGS-LG 77 (474)
Q Consensus 1 MrEIItlq~Gq~gN~IG~hfWn~q~~~~~~~~~~~~~~~~~--~~~~~~~v~Fr~g~t~~g~~~y~PR~llvDl~~~-~~ 77 (474)
||||||||+||||||||..||++++.||+++++|....... ......++||+ |+.+| +|+||+|+||+|++ ++
T Consensus 1 m~EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~--e~~~~--~~~pRav~iD~e~~~i~ 76 (450)
T PLN00221 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFS--ETGAG--KHVPRAVFVDLEPTVID 76 (450)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhhee--ccCCc--ccccchhcCCCChhhhh
Confidence 99999999999999999999999999999988875422110 01246789998 66677 89999999999999 66
Q ss_pred cccccccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhcccccccccCCCCCCCCcccccccccccchhcCC
Q 011960 78 SMSSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDISLYELGG 157 (474)
Q Consensus 78 sl~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~s~~~l~~ 157 (474)
.+++ ++ ++.||++++ ++.+++|+||||++
T Consensus 77 ~i~~---------------------------~~------~~~lf~~~~----~i~~~~gagNnwa~-------------- 105 (450)
T PLN00221 77 EVRT---------------------------GT------YRQLFHPEQ----LISGKEDAANNFAR-------------- 105 (450)
T ss_pred hhcc---------------------------Cc------cccccCccc----eeccCCCccccccc--------------
Confidence 6642 33 466889988 99999999999998
Q ss_pred CCCCCCccccccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeee
Q 011960 158 LWMDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAV 236 (474)
Q Consensus 158 ~~~~~~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v 236 (474)
|+|+.|.++ .|+++|+||+++|+||+|||||++||++||| ||+||+++|+|+|||||+++++++|
T Consensus 106 --------Gy~~~g~~~------~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~y~~~~~~~~~v 171 (450)
T PLN00221 106 --------GHYTIGKEI------VDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTV 171 (450)
T ss_pred --------cccchhHHH------HHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHhcccccceeeEe
Confidence 899999887 8999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCCccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcC
Q 011960 237 RSPSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRM 316 (474)
Q Consensus 237 ~p~~~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~ 316 (474)
+|+. ..+++++++||++|++++|.+++|+++|++|++|++ +|.+.++++.+++.++|.|||++|+++|.++||
T Consensus 172 ~P~~------~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~-~~~~~~~~~~p~~~dlN~lIa~~is~~T~s~RF 244 (450)
T PLN00221 172 YPSP------QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYD-ICRRSLDIERPTYTNLNRLISQVISSLTASLRF 244 (450)
T ss_pred eCCC------cCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHH-HHHhhcCCCCCCHHHHHHHHhhhcccccccccc
Confidence 9986 456789999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCccChhhHhhccccccccceeeccccCCCCCCCC--------chhhHHHHHhc---cCCCCCCCcC-
Q 011960 317 EPVGPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPALN--------GKQHEQSLLGN---LQPLTPELLN- 384 (474)
Q Consensus 317 ~~~g~~~~~~~~~~~~~l~~~~~~L~~~~r~~~~~~~~~~~p~~~~~--------~~~~~~~l~~~---~~~~tp~~~~- 384 (474)
+ |. .+.+|++++.+|+|+||.||+ .+..+|+.... -.++...+... +....|....
T Consensus 245 ~--g~--------ln~dl~~l~~nLvP~P~lhfl--~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~l~~~~~~~~ky 312 (450)
T PLN00221 245 D--GA--------LNVDITEFQTNLVPYPRIHFM--LSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKY 312 (450)
T ss_pred c--cc--------ccCCHHHHHHhcCCCCCceee--ccccCccccccccccccCCHHHHHHHHhcccceeeecCCCcchH
Confidence 8 55 678999999999999999994 33445543221 12222222211 0011111000
Q ss_pred ----------------------------CCcccCCCCCc-cceeccC--------------ceeeeecchhhHHHHHHHH
Q 011960 385 ----------------------------SPFVGSSPRGS-LEVHSIP--------------MAVRLRSSSAILPFLENRL 421 (474)
Q Consensus 385 ----------------------------~~~~~~~~~~~-~~~~sip--------------~~~~L~n~t~i~~~~~~~~ 421 (474)
..|+.|-|.+. ..++..| .++.|+|+|+|..+|+++.
T Consensus 313 la~~~~~RG~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s~~~l~NstsI~~~f~~i~ 392 (450)
T PLN00221 313 MACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRID 392 (450)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCccccccceeEEEecCCcHHHHHHHHHH
Confidence 13444444433 4444333 1457899999999999999
Q ss_pred HHHhchhhhccccccceeeccCCChhhHHHHHHHHHHHHhcccCC
Q 011960 422 GNLRRYGLQRGALGAELLRNWGFADDELYDMGEMLSKMVSTMKPH 466 (474)
Q Consensus 422 ~~f~~l~~rr~~~~~~~y~~~G~~~~ef~E~~e~l~~l~~~Y~~~ 466 (474)
++|++|+.||++| |||+++|||++||.||+++|++|+++|++-
T Consensus 393 ~~f~~mf~rkAfl--h~Y~~eGmee~eF~EA~~~l~~li~~Y~~~ 435 (450)
T PLN00221 393 HKFDLMYAKRAFV--HWYVGEGMEEGEFSEAREDLAALEKDYEEV 435 (450)
T ss_pred HHHHHHHhhcchh--hhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999998777766 999999999999999999999999999863
No 3
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=100.00 E-value=1.8e-74 Score=601.47 Aligned_cols=396 Identities=32% Similarity=0.505 Sum_probs=329.8
Q ss_pred ccEEEEecCCchhHHHHHHHHHHHHHcCCCCCCCCCcccccccccccccccccccCCCceeeeeeeeeeccccccccccc
Q 011960 2 REIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGSLGSMSS 81 (474)
Q Consensus 2 rEIItlq~Gq~gN~IG~hfWn~q~~~~~~~~~~~~~~~~~~~~~~~~v~Fr~g~t~~g~~~y~PR~llvDl~~~~~sl~~ 81 (474)
|||||||+||++|||||||||+||++++|.+++.. ..++++|+||+|++.+|.+||+||+|+||+|+++|+|++
T Consensus 1 rEIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~~------~~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~ 74 (493)
T cd06060 1 REVLTLQLGHYANFVGTHWWNLQEANFGYDPDSPA------SELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPE 74 (493)
T ss_pred CceEEEeccCccccHhhhhhhhhhhhcCCCCCCcc------ccCCCceeeeccccCCCceeEcCcEEEEecCCccccccc
Confidence 89999999999999999999999999999987753 467999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhcccccccccCCCCCCCCccc-ccccccccchhcCCCCC
Q 011960 82 RGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQR-EIQDKDISLYELGGLWM 160 (474)
Q Consensus 82 ~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~~~~~~~~~~n~a~-~~~~~~~s~~~l~~~~~ 160 (474)
.|.| ..+ .|+ +....|+||.| .|+|+++ +.|++.|+
T Consensus 75 ~~~l----------------------~~~--------~l~-----------~~v~~WSDy~r~~yhPrS~--~~L~~~~~ 111 (493)
T cd06060 75 EGSL----------------------KVY--------NLE-----------ASVNVWSDYLYARLHPRSI--NVINQYNH 111 (493)
T ss_pred ccCc----------------------CCc--------ccc-----------cchhhhhhcceeeeCCCce--eeccchhc
Confidence 8755 000 011 12345777775 6777765 66677666
Q ss_pred C--CCccccccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCchhhHHHHHHHHHHHhCCcceeeeeecC
Q 011960 161 D--PQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEYANTPVLLFAVRS 238 (474)
Q Consensus 161 ~--~~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~sG~~s~lle~L~DEY~~~~i~~~~v~p 238 (474)
+ ..+|+.|+.|.++|++.+..|+++|+||+++|+||+|||||+++|++|||||+|++++|+|+|||||+.+++|++.|
T Consensus 112 ~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGFqi~~sl~gG~sG~gs~lLE~L~DEy~k~~i~~~~v~P 191 (493)
T cd06060 112 DGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGFQVLCDLHDGFSGVGAKCLEHLQDEYGKASLLFPGLPP 191 (493)
T ss_pred CCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccccEEEEEecCCcccchHHHHHHHHHHhcCccceeEEEeCC
Confidence 5 46799999999999998889999999999999999999999999999999999999999999999999999999988
Q ss_pred CCccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCC-Cc----ccccccCccCCCCcchHHHHHHHHHhhcccC
Q 011960 239 PSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFL-NE----SKASTLLCIENEKPYHCSAVYAAALHSATLP 313 (474)
Q Consensus 239 ~~~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l-~~----~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~ 313 (474)
..+... ...+.++++||++|++++|.++||+++||..+.. +. +...+.+.++..+.||++||+|++|+|+|+|
T Consensus 192 ~~~~~~--~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w~~~~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp 269 (493)
T cd06060 192 VIPPDA--SSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLWRKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLP 269 (493)
T ss_pred Cccccc--ccchhHHHHHHHHHHHHHHHhcCCEEEEEecccccccCCCCCCCCcccccCCCCchHHHHHHHHHHhhcccc
Confidence 642110 1235789999999999999999999999997632 11 2346678999999999999999999999999
Q ss_pred CcCCCCCCCCCcccccCccChhhHhhccccccccceeeccccCCCCCCCCchhhHHHHHhc----c-CCCCCCCcC----
Q 011960 314 YRMEPVGPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPALNGKQHEQSLLGN----L-QPLTPELLN---- 384 (474)
Q Consensus 314 ~R~~~~g~~~~~~~~~~~~~l~~~~~~L~~~~r~~~~~~~~~~~p~~~~~~~~~~~~l~~~----~-~~~tp~~~~---- 384 (474)
+|++.. ..+|.+|+..|.+.+|+ ++++..++|+|...++++.+.|.+. . .+++|.+..
T Consensus 270 ~Rl~~~-----------~~~m~~l~~~l~~~gRk--i~~~~~a~P~p~~~~~~l~d~L~~~~~~~~~~~l~p~~~~~~~~ 336 (493)
T cd06060 270 YRLKSS-----------PSSLSGLCDDLSFSGRK--VVAAGLALPFPMVGGQDLIDFLDQSDGAVPWLQLTPGCQIGTRC 336 (493)
T ss_pred ceeccC-----------CccHHHHHHHhhhccch--hhhhccCCCCCCCCCCcHHHHHHhcCCCCCccccCCCCccCcee
Confidence 999843 24699999999998886 7788899999998888877655421 0 233333110
Q ss_pred ----------------------------------------------------------------CCcccCCCCC------
Q 011960 385 ----------------------------------------------------------------SPFVGSSPRG------ 394 (474)
Q Consensus 385 ----------------------------------------------------------------~~~~~~~~~~------ 394 (474)
.|||.++...
T Consensus 337 ~~qsv~~rG~~~~~~~~~~~~~~~~~~~~~~c~s~~~~l~~y~~~~~~~s~~~~~~~~~p~~~~~PfP~if~~~v~~~G~ 416 (493)
T cd06060 337 VIQSVVLRGIPEERLKRRLLAGDQARSPAYACSSVEEMLQLYLQCQYPGSMSALSVLPLPLKIRVPFPYIFNPNISADGF 416 (493)
T ss_pred eeeeehhcCCChhhccccccccccccccchhcCCHHHHHHHHHHhccCCcchhheecCCCCCCCCCCchhhccccCCCcc
Confidence 1566554321
Q ss_pred --------cc--ceeccCceeeeecchhhHHHHHHHHHHHhchhhhccccccceeeccCCChhhHHHHHHHHHHHHhccc
Q 011960 395 --------SL--EVHSIPMAVRLRSSSAILPFLENRLGNLRRYGLQRGALGAELLRNWGFADDELYDMGEMLSKMVSTMK 464 (474)
Q Consensus 395 --------~~--~~~sip~~~~L~n~t~i~~~~~~~~~~f~~l~~rr~~~~~~~y~~~G~~~~ef~E~~e~l~~l~~~Y~ 464 (474)
.. .|+|+|++|+|+|++++.++|++++++++|++++|.+ .|...|+|+|||+|++|.|.+|+++|+
T Consensus 417 ~~~~~~~~~~~~~V~s~p~~a~l~ss~~l~~~l~~l~~~~~kl~~~r~~----~~~~~g~e~de~~e~le~L~~~~~~Y~ 492 (493)
T cd06060 417 VLDNSSRGSAGADVESIPVLAALQSSPSLGEMLESLHRQLSKLDLRRKA----SFFESGLEEDEYKELLEQLLDLAECYE 492 (493)
T ss_pred ccCCCcccccccceeechhhhhhcCchHHHHHHHHHHHHHHhhhhHhhh----cccccccCHHHHHHHHHHHHHHHHhhc
Confidence 11 3899999999999999999999999999999999984 788899999999999999999999997
Q ss_pred C
Q 011960 465 P 465 (474)
Q Consensus 465 ~ 465 (474)
+
T Consensus 493 ~ 493 (493)
T cd06060 493 D 493 (493)
T ss_pred C
Confidence 4
No 4
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=8e-74 Score=596.09 Aligned_cols=375 Identities=19% Similarity=0.274 Sum_probs=308.4
Q ss_pred CccEEEEecCCchhHHHHHHHHHHHHHcCCCCCCCCCcccc--cccccccccccccccCCCceeeeeeeeeeccccc-cc
Q 011960 1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFR--NQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGS-LG 77 (474)
Q Consensus 1 MrEIItlq~Gq~gN~IG~hfWn~q~~~~~~~~~~~~~~~~~--~~~~~~~v~Fr~g~t~~g~~~y~PR~llvDl~~~-~~ 77 (474)
||||||||+||||||||..||++++.||+++++|....... ......++||+ |+.+| +|+||+|+||+|++ ++
T Consensus 1 M~EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~--e~~~~--~~~pRav~iD~e~~~i~ 76 (448)
T PTZ00335 1 MREVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFS--ETGAG--KHVPRCVFLDLEPTVID 76 (448)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeE--EcCCC--ccccccccccCCcchhh
Confidence 99999999999999999999999999999988875422110 01246789998 66677 99999999999999 66
Q ss_pred cccccccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhcccccccccCCCCCCCCcccccccccccchhcCC
Q 011960 78 SMSSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDISLYELGG 157 (474)
Q Consensus 78 sl~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~s~~~l~~ 157 (474)
.+++ ++ ++.|+++++ ++.+++|+|||||+
T Consensus 77 ~i~~---------------------------~~------~~~l~~~~~----~i~~~~gagnnwa~-------------- 105 (448)
T PTZ00335 77 EVRT---------------------------GT------YRQLFHPEQ----LISGKEDAANNFAR-------------- 105 (448)
T ss_pred hccc---------------------------Cc------cccccCchh----eeecCCCCCCcccc--------------
Confidence 6642 33 556888888 99999999999998
Q ss_pred CCCCCCccccccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeee
Q 011960 158 LWMDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAV 236 (474)
Q Consensus 158 ~~~~~~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v 236 (474)
|+|..|.++ .|+++|+||+++|+||+||||+++||++||| ||+|+.++|+|+||||++++++++|
T Consensus 106 --------Gy~~~G~~~------~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~yp~~~~~~~~v 171 (448)
T PTZ00335 106 --------GHYTIGKEI------VDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTI 171 (448)
T ss_pred --------cccchhhhH------hHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHhccccceeeEEe
Confidence 899999887 8999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCCccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcC
Q 011960 237 RSPSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRM 316 (474)
Q Consensus 237 ~p~~~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~ 316 (474)
+|+. ..+++++++||++|+|++|.+++|++++++|++|.+ +|.+.+.++.+++.++|.+||++|.++|.++||
T Consensus 172 ~P~~------~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~-i~~~~~~~~~~~~~~~N~~Ia~~is~~t~~~rf 244 (448)
T PTZ00335 172 YPSP------QVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYD-ICRRNLDIERPTYTNLNRLIAQVISSLTASLRF 244 (448)
T ss_pred cCCC------CCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHH-HHHHhcCCCCCCHHHHHHHHHhhhccccccccc
Confidence 9986 456889999999999999999999999999999998 888888888899999999999999999999999
Q ss_pred CCCCCCCCcccccCccChhhHhhccccccccceeeccccCCCCCCCC--------chhhHHHHHhc---cCCCCCCCcC-
Q 011960 317 EPVGPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPALN--------GKQHEQSLLGN---LQPLTPELLN- 384 (474)
Q Consensus 317 ~~~g~~~~~~~~~~~~~l~~~~~~L~~~~r~~~~~~~~~~~p~~~~~--------~~~~~~~l~~~---~~~~tp~~~~- 384 (474)
+ |. .+.+|++++.+|+|+||.||+ .+..+|+.... -.++...+... +....|....
T Consensus 245 ~--g~--------~~~dl~~l~~nLvP~P~l~fl--~~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~~~ 312 (448)
T PTZ00335 245 D--GA--------LNVDLTEFQTNLVPYPRIHFM--LSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKY 312 (448)
T ss_pred c--cc--------cCCCHHHHhccccCCCCceec--ccccCcccccccccccCCCHHHHHHHhcCccceeEecCCCccch
Confidence 8 55 578999999999999999994 33455553321 11222222210 1000111000
Q ss_pred ----------------------------CCcccCCCCCc-cceeccCc--------------eeeeecchhhHHHHHHHH
Q 011960 385 ----------------------------SPFVGSSPRGS-LEVHSIPM--------------AVRLRSSSAILPFLENRL 421 (474)
Q Consensus 385 ----------------------------~~~~~~~~~~~-~~~~sip~--------------~~~L~n~t~i~~~~~~~~ 421 (474)
..|+.|-|.+. ..++..|+ ++.|+|+|+|..+|++++
T Consensus 313 ls~~~~~RG~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lsNstsI~~~f~~i~ 392 (448)
T PTZ00335 313 MACCLMYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRID 392 (448)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceEEEEecCCcHHHHHHHHHH
Confidence 13444444433 34443321 567999999999999999
Q ss_pred HHHhchhhhccccccceeeccCCChhhHHHHHHHHHHHHhcccC
Q 011960 422 GNLRRYGLQRGALGAELLRNWGFADDELYDMGEMLSKMVSTMKP 465 (474)
Q Consensus 422 ~~f~~l~~rr~~~~~~~y~~~G~~~~ef~E~~e~l~~l~~~Y~~ 465 (474)
++|++|+.||++| |||+++|||++||.||+++|++|+++|++
T Consensus 393 ~~f~~mf~rkAfl--h~Y~~eGmee~eF~EA~~~l~~li~~Y~~ 434 (448)
T PTZ00335 393 HKFDLMYAKRAFV--HWYVGEGMEEGEFSEAREDLAALEKDYEE 434 (448)
T ss_pred HHHHHHHhhcchh--hhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999998777766 99999999999999999999999999985
No 5
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=1.5e-72 Score=586.90 Aligned_cols=375 Identities=19% Similarity=0.289 Sum_probs=306.5
Q ss_pred CccEEEEecCCchhHHHHHHHHHHHHHcCCCCCCCCCcccccccccccccccccccCCCceeeeeeeeeeccccc-cccc
Q 011960 1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGS-LGSM 79 (474)
Q Consensus 1 MrEIItlq~Gq~gN~IG~hfWn~q~~~~~~~~~~~~~~~~~~~~~~~~v~Fr~g~t~~g~~~y~PR~llvDl~~~-~~sl 79 (474)
|||||+||+||||||||..||++++.||++++++.............++||+ |+.+| +|+||+|+||+|++ ++.+
T Consensus 2 m~EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~--e~~~~--~~~pRav~iD~e~~vi~~i 77 (454)
T PLN00222 2 PREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFY--QADDE--HYIPRALLIDLEPRVINGI 77 (454)
T ss_pred CccEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeE--EcCCC--cccceeeecCCCcchhhhh
Confidence 6999999999999999999999999999998877542211112346789998 66667 99999999999999 6666
Q ss_pred cccccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhcccccccccCCC--CCCCCcccccccccccchhcCC
Q 011960 80 SSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTS--SGKSDSQREIQDKDISLYELGG 157 (474)
Q Consensus 80 ~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~~~~~~--~~~~n~a~~~~~~~~s~~~l~~ 157 (474)
+ .++ ++.||++++ ++.+++ |+||||++
T Consensus 78 ~---------------------------~~~------~~~lf~~~~----~~~~~~~~gagnn~a~-------------- 106 (454)
T PLN00222 78 Q---------------------------NSE------YRNLYNHEN----IFVSDHGGGAGNNWAS-------------- 106 (454)
T ss_pred c---------------------------cCc------cccccCccc----eeecccCCCcccchHH--------------
Confidence 4 233 566889888 888886 68999998
Q ss_pred CCCCCCccccccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeee
Q 011960 158 LWMDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAV 236 (474)
Q Consensus 158 ~~~~~~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v 236 (474)
| |..|.++ .|+++|+||+++|.||++|||+++|+++||| ||+|+.++|+|+|+||++.+++++|
T Consensus 107 --------G-y~~g~~~------~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~y~~~~~~~~~v 171 (454)
T PLN00222 107 --------G-YHQGEQV------EEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSV 171 (454)
T ss_pred --------h-HHHHHHH------HHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhhcCCcceeeEEe
Confidence 6 6578776 8999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCCccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcC
Q 011960 237 RSPSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRM 316 (474)
Q Consensus 237 ~p~~~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~ 316 (474)
+|+.. ...++++++||++|+|++|.+++|++++++|++|++ +|.+.++++.+++.++|.|||++|+++|+++||
T Consensus 172 ~P~~~-----~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~-ic~~~l~i~~p~~~dlN~lIA~~ls~~T~s~Rf 245 (454)
T PLN00222 172 FPNQM-----ETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNR-IAVDRLHLENPTFAQTNSLVSTVMSASTTTLRY 245 (454)
T ss_pred cCCCc-----ccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHH-HHHHhcCCCCCCHHHHHHHhccccCCcccccCC
Confidence 99752 246789999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCccChhhHhhccccccccceeeccccCCCCCCCC---------chhhHHHHHh---cc---CCCCCC
Q 011960 317 EPVGPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPALN---------GKQHEQSLLG---NL---QPLTPE 381 (474)
Q Consensus 317 ~~~g~~~~~~~~~~~~~l~~~~~~L~~~~r~~~~~~~~~~~p~~~~~---------~~~~~~~l~~---~~---~~~tp~ 381 (474)
+ |. .+.+|++++.+|+|+||.||+ .+...|+.... -.+....+.. .+ .|..+.
T Consensus 246 p--g~--------ln~dl~~l~~nLvP~P~lhfl--~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n~~~~~~~~~~~ 313 (454)
T PLN00222 246 P--GY--------MNNDLVGLLASLIPTPRCHFL--MTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMVSSYARTKE 313 (454)
T ss_pred C--Cc--------cCCCHHHHhhhcCCCCCceee--ccccccccccccccceeeCCHHHHHHHHhcccCceeecCCcccc
Confidence 8 55 678999999999999999994 33455553321 1122222221 11 111100
Q ss_pred C--cC-----------------------------CCcccCCCCCc-cceeccCc---------eeeeecchhhHHHHHHH
Q 011960 382 L--LN-----------------------------SPFVGSSPRGS-LEVHSIPM---------AVRLRSSSAILPFLENR 420 (474)
Q Consensus 382 ~--~~-----------------------------~~~~~~~~~~~-~~~~sip~---------~~~L~n~t~i~~~~~~~ 420 (474)
. .. ..|+.|.|.+. .+++..|+ ++.|+|+|+|...|+++
T Consensus 314 ~~~~k~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i 393 (454)
T PLN00222 314 ASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLANHTSIRHLFSKC 393 (454)
T ss_pred ccccchHHHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCCCCceEEEEEeCCHHHHHHHHHH
Confidence 0 00 13455555443 45555443 56799999999999999
Q ss_pred HHHHhchhhhccccccceeeccCCC----hhhHHHHHHHHHHHHhcccC
Q 011960 421 LGNLRRYGLQRGALGAELLRNWGFA----DDELYDMGEMLSKMVSTMKP 465 (474)
Q Consensus 421 ~~~f~~l~~rr~~~~~~~y~~~G~~----~~ef~E~~e~l~~l~~~Y~~ 465 (474)
.++|++|+.||++| |||+++||+ ++||.||++.|++|+++|++
T Consensus 394 ~~~f~~mf~rkAfl--H~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~ 440 (454)
T PLN00222 394 LSQYDKLRKKQAFL--DNYRKFPMFADNDLSEFDESREIVESLVDEYKA 440 (454)
T ss_pred HHHHHHHHhhCccc--eeecCCCcccCcchhHHHHHHHHHHHHHHHHHH
Confidence 99999998777766 999999993 89999999999999999985
No 6
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=2e-72 Score=583.05 Aligned_cols=372 Identities=19% Similarity=0.292 Sum_probs=304.3
Q ss_pred ccEEEEecCCchhHHHHHHHHHHHHHcCCCCCCCCCcccccccccccccccccccCCCceeeeeeeeeeccccc-ccccc
Q 011960 2 REIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGS-LGSMS 80 (474)
Q Consensus 2 rEIItlq~Gq~gN~IG~hfWn~q~~~~~~~~~~~~~~~~~~~~~~~~v~Fr~g~t~~g~~~y~PR~llvDl~~~-~~sl~ 80 (474)
||||+||+||||||||..||++++.||++++++.............++||. |+.+| +|+||+|+||+|++ ++.++
T Consensus 1 ~EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~--e~~~~--~~~pRav~iD~Ep~vi~~i~ 76 (431)
T cd02188 1 REIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFY--QADDE--HYVPRAILIDLEPRVINSIQ 76 (431)
T ss_pred CcEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEE--ECCCC--ccCCcceeccCCcchhhhhh
Confidence 799999999999999999999999999998887542211112346789998 66777 99999999999999 66654
Q ss_pred ccccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhcccccccccCCC--CCCCCcccccccccccchhcCCC
Q 011960 81 SRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTS--SGKSDSQREIQDKDISLYELGGL 158 (474)
Q Consensus 81 ~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~~~~~~--~~~~n~a~~~~~~~~s~~~l~~~ 158 (474)
.++ ++.||++++ ++.++. ++||||++
T Consensus 77 ---------------------------~~~------~~~lf~~~~----~~~~~~~~gagnnwa~--------------- 104 (431)
T cd02188 77 ---------------------------NSE------YRNLYNPEN----IFLSKHGGGAGNNWAS--------------- 104 (431)
T ss_pred ---------------------------cCc------cccccCccc----eEeeccCCCccccHHH---------------
Confidence 233 466889988 888887 89999998
Q ss_pred CCCCCccccccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeeec
Q 011960 159 WMDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVR 237 (474)
Q Consensus 159 ~~~~~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v~ 237 (474)
| |..|.++ .|+++|+||+++|+||++|||+++||++||| ||+|+.|+|+|+|+||++.+++++|+
T Consensus 105 -------G-y~~g~~~------~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y~~~~~~~~~V~ 170 (431)
T cd02188 105 -------G-YSQGEEV------QEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKKLIQTYSVF 170 (431)
T ss_pred -------H-HHHHHHH------HHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhHcCcceeeeEEec
Confidence 6 6678776 8999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcCC
Q 011960 238 SPSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRME 317 (474)
Q Consensus 238 p~~~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~~ 317 (474)
|... ...++++++||++|+|++|.+++|++++++|++|.+ +|.+.++++.+++.++|++||++|+++|+|+||+
T Consensus 171 P~~~-----~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~-i~~~~l~~~~~~~~~~N~~ia~~ls~~t~~~Rf~ 244 (431)
T cd02188 171 PNQD-----ESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNR-IATDRLHIQNPTFDQINSLVSTVMSASTTTLRYP 244 (431)
T ss_pred CCCc-----cCCCccceecHHHHHHHHHHHhCCeeeecchHHHHH-HHHHhcCCCCCCHHHHHHHHhccCCCcccceecC
Confidence 9762 235789999999999999999999999999999998 8999999999999999999999999999999998
Q ss_pred CCCCCCCcccccCccChhhHhhccccccccceeeccccCCCCCCCC---------chhhHHHHHhc---cCCCCC-CCcC
Q 011960 318 PVGPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPALN---------GKQHEQSLLGN---LQPLTP-ELLN 384 (474)
Q Consensus 318 ~~g~~~~~~~~~~~~~l~~~~~~L~~~~r~~~~~~~~~~~p~~~~~---------~~~~~~~l~~~---~~~~tp-~~~~ 384 (474)
|. .+.++++++.+|+|+||.||+. +...|+.... -.++...+.+. +....| ....
T Consensus 245 --g~--------ln~dl~~i~tnLvP~P~lhfl~--~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n~m~~~~~~~~~k 312 (431)
T cd02188 245 --GY--------MNNDLISLIASLIPTPRLHFLM--TSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMVSTATRKNGC 312 (431)
T ss_pred --Cc--------cCCCHHHHHHhcCCCCCceeec--cccCccccchhhcceecCCHHHHHHHHhccccceeecCCCccch
Confidence 54 6789999999999999999943 2344443221 12233333321 111111 0000
Q ss_pred -----------------------------CCcccCCCCCc-cceeccCc---------eeeeecchhhHHHHHHHHHHHh
Q 011960 385 -----------------------------SPFVGSSPRGS-LEVHSIPM---------AVRLRSSSAILPFLENRLGNLR 425 (474)
Q Consensus 385 -----------------------------~~~~~~~~~~~-~~~~sip~---------~~~L~n~t~i~~~~~~~~~~f~ 425 (474)
..|+.|.|.+. ..++..|+ ++.|+|+|+|..+|+++.++|+
T Consensus 313 ~la~~~~~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~kf~ 392 (431)
T cd02188 313 YISILNIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTAHRVSGLMLANHTSIASLFERILKQFD 392 (431)
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCCCceeEEEecCChHHHHHHHHHHHHHH
Confidence 12555655543 44443332 4579999999999999999999
Q ss_pred chhhhccccccceeeccCCC---hhhHHHHHHHHHHHHhcc
Q 011960 426 RYGLQRGALGAELLRNWGFA---DDELYDMGEMLSKMVSTM 463 (474)
Q Consensus 426 ~l~~rr~~~~~~~y~~~G~~---~~ef~E~~e~l~~l~~~Y 463 (474)
+|+.||++| |||+++||| ++||.||++.|++|+++|
T Consensus 393 ~mf~krAfl--H~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 393 KLRKRRAFL--DNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred HHHhhCchh--hhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 998888876 999999999 999999999999999998
No 7
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=4.6e-72 Score=583.58 Aligned_cols=375 Identities=20% Similarity=0.277 Sum_probs=309.7
Q ss_pred CccEEEEecCCchhHHHHHHHHHHHHHcCCCCCCCCCcccccccccccccccccccCCCceeeeeeeeeeccccc-cccc
Q 011960 1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGS-LGSM 79 (474)
Q Consensus 1 MrEIItlq~Gq~gN~IG~hfWn~q~~~~~~~~~~~~~~~~~~~~~~~~v~Fr~g~t~~g~~~y~PR~llvDl~~~-~~sl 79 (474)
|||||+||+||||||||..||++++.||++++++.............++||+ ++.+| +|+||+|+||++++ +..+
T Consensus 1 M~Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~--e~~~~--~~~pRav~iD~e~~vi~~i 76 (445)
T PTZ00010 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYN--EATGG--RYVPRAVLMDLEPGTMDSV 76 (445)
T ss_pred CCcEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeec--ccCCC--ceEEeeeeccCChhhhhhh
Confidence 9999999999999999999999999999998887542211111235689998 66677 99999999999999 6655
Q ss_pred cccccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhcccccccccCCCCCCCCcccccccccccchhcCCCC
Q 011960 80 SSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDISLYELGGLW 159 (474)
Q Consensus 80 ~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~s~~~l~~~~ 159 (474)
+ ..+ ++.|+++++ ++.+++++|||||+
T Consensus 77 ~---------------------------~~~------~~~lf~~~~----~~~~~~gagNnwa~---------------- 103 (445)
T PTZ00010 77 R---------------------------AGP------YGQLFRPDN----FIFGQSGAGNNWAK---------------- 103 (445)
T ss_pred c---------------------------ccc------hhhhcCccc----eeecccCCcccccc----------------
Confidence 3 233 556888888 89999999999998
Q ss_pred CCCCccccccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeeecC
Q 011960 160 MDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVRS 238 (474)
Q Consensus 160 ~~~~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v~p 238 (474)
|+|..|.++ .|+++|+||+++|+||++|||+++|+++||| ||+|++++|.|+|||||+.+++++|+|
T Consensus 104 ------G~~~~g~~~------~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~~~~~~~~~v~P 171 (445)
T PTZ00010 104 ------GHYTEGAEL------IDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVFP 171 (445)
T ss_pred ------chhhhhHHH------HHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCCccceeeeEecC
Confidence 889999887 8999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcCCC
Q 011960 239 PSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEP 318 (474)
Q Consensus 239 ~~~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~~~ 318 (474)
+. ..+++++++||++|++++|.+++|.+++++|++|++ +|.+.++++.+++.++|.|||++|+++|+++||+
T Consensus 172 ~~------~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~-i~~~~l~~~~p~~~~lN~lIaq~is~~t~~~Rfp- 243 (445)
T PTZ00010 172 SP------KVSDTVVEPYNATLSVHQLVENADESMCIDNEALYD-ICFRTLKLTTPTYGDLNHLVSAVMSGVTCCLRFP- 243 (445)
T ss_pred Cc------ccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHH-HHHHhccCCCCCHHHHHHHHHhhccccccceecC-
Confidence 86 457899999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred CCCCCCcccccCccChhhHhhccccccccceeeccccCCCCCCCC--------chhhHHHHHh---c---cCCCCCC---
Q 011960 319 VGPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPALN--------GKQHEQSLLG---N---LQPLTPE--- 381 (474)
Q Consensus 319 ~g~~~~~~~~~~~~~l~~~~~~L~~~~r~~~~~~~~~~~p~~~~~--------~~~~~~~l~~---~---~~~~tp~--- 381 (474)
|. .+.+|++|+.+|+|+||.||+. +...|+.+.. ..++...+.. . +.|..+.
T Consensus 244 -g~--------ln~dl~~l~tnLvP~P~l~fl~--~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~n~~~~~~~~~~k~la 312 (445)
T PTZ00010 244 -GQ--------LNSDLRKLAVNLVPFPRLHFFM--MGFAPLTSRGSQQYRGLSVPELTQQMFDAKNMMCAADPRHGRYLT 312 (445)
T ss_pred -Cc--------ccccHHHHHHHHhcCCCceeee--cccCccccccccccccCCHHHHHHhHhcccceEeecCCCcchhHH
Confidence 65 6789999999999999999943 2344543221 1122222221 0 1111110
Q ss_pred --------CcC---------------CCcccCCCCCc-cceeccCc------eeeeecchhhHHHHHHHHHHHhchhhhc
Q 011960 382 --------LLN---------------SPFVGSSPRGS-LEVHSIPM------AVRLRSSSAILPFLENRLGNLRRYGLQR 431 (474)
Q Consensus 382 --------~~~---------------~~~~~~~~~~~-~~~~sip~------~~~L~n~t~i~~~~~~~~~~f~~l~~rr 431 (474)
+.. ..|+.|.|.+. ..++..|+ ++.|+|+|+|..+|+++.++|++|+.||
T Consensus 313 ~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~lsNstsi~~~~~~i~~~f~~m~~rr 392 (445)
T PTZ00010 313 ASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSVTFIGNSTAIQEMFRRVGEQFTAMFRRK 392 (445)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCCcCccceEEEecCCcHHHHHHHHHHHHHHHHHhcC
Confidence 000 13455555443 44555543 5679999999999999999999998888
Q ss_pred cccccceeeccCCChhhHHHHHHHHHHHHhcccC
Q 011960 432 GALGAELLRNWGFADDELYDMGEMLSKMVSTMKP 465 (474)
Q Consensus 432 ~~~~~~~y~~~G~~~~ef~E~~e~l~~l~~~Y~~ 465 (474)
++| |||+++|||++||.||++.|++|+++|++
T Consensus 393 Afl--h~Y~~eGmee~ef~EA~~~l~~li~~Y~~ 424 (445)
T PTZ00010 393 AFL--HWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424 (445)
T ss_pred chh--hhhhccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 766 99999999999999999999999999985
No 8
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=1.1e-71 Score=579.59 Aligned_cols=374 Identities=18% Similarity=0.261 Sum_probs=306.7
Q ss_pred ccEEEEecCCchhHHHHHHHHHHHHHcCCCCCCCCCcccc--cccccccccccccccCCCceeeeeeeeeeccccc-ccc
Q 011960 2 REIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFR--NQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGS-LGS 78 (474)
Q Consensus 2 rEIItlq~Gq~gN~IG~hfWn~q~~~~~~~~~~~~~~~~~--~~~~~~~v~Fr~g~t~~g~~~y~PR~llvDl~~~-~~s 78 (474)
||||+||+||||||||..||++++.||+++++|....... ......++||+ |+.+| +|+||+|+||++++ +..
T Consensus 1 ~EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~--e~~~~--~~~pRav~iD~e~~~i~~ 76 (434)
T cd02186 1 REVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFS--ETGSG--KHVPRAVFIDLEPTVIDE 76 (434)
T ss_pred CceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEE--ECCCC--cCcccccccCCcHHHHHh
Confidence 7999999999999999999999999999988875422211 12346789999 66677 89999999999998 766
Q ss_pred ccccccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhcccccccccCCCCCCCCcccccccccccchhcCCC
Q 011960 79 MSSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDISLYELGGL 158 (474)
Q Consensus 79 l~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~s~~~l~~~ 158 (474)
|.+ ++ .+.|+++++ ++.+++++|||||+
T Consensus 77 i~~---------------------------~~------~~~l~~~~~----~~~~~~g~gnnwa~--------------- 104 (434)
T cd02186 77 VRT---------------------------GT------YRQLFHPEQ----LISGKEDAANNFAR--------------- 104 (434)
T ss_pred hcc---------------------------Cc------cccccCccc----eeecCCCCCccccc---------------
Confidence 642 22 456788887 88999999999998
Q ss_pred CCCCCccccccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeeec
Q 011960 159 WMDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVR 237 (474)
Q Consensus 159 ~~~~~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v~ 237 (474)
|+|..|.++ .|+++|+||+++|+||++|||+++|+++||| ||+|+.++|+|+||||++++++++|+
T Consensus 105 -------Gy~~~G~~~------~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y~~~~~~~~~v~ 171 (434)
T cd02186 105 -------GHYTIGKEI------IDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKSKLEFTVY 171 (434)
T ss_pred -------ccchhHHHH------HHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhcCccceeeEEEe
Confidence 899999887 8999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcCC
Q 011960 238 SPSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRME 317 (474)
Q Consensus 238 p~~~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~~ 317 (474)
|+. ..+++++++||++|+|++|.+++|++++++|++|.+ +|.+.++++.+++.++|++||++|+++|+++||+
T Consensus 172 P~~------~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~-~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~~rf~ 244 (434)
T cd02186 172 PSP------QVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYD-ICRRNLDIERPTYTNLNRLIAQVVSSITASLRFD 244 (434)
T ss_pred CCC------CCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHH-HHHhhcCCCCCCHHHHHHHHHHHhhccccceecC
Confidence 986 456789999999999999999999999999999998 8888888888999999999999999999999998
Q ss_pred CCCCCCCcccccCccChhhHhhccccccccceeeccccCCCCCCC--------CchhhHHHHHhc---cCCCCCCCcC--
Q 011960 318 PVGPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPAL--------NGKQHEQSLLGN---LQPLTPELLN-- 384 (474)
Q Consensus 318 ~~g~~~~~~~~~~~~~l~~~~~~L~~~~r~~~~~~~~~~~p~~~~--------~~~~~~~~l~~~---~~~~tp~~~~-- 384 (474)
|. .+++|++++.+|+|+||.||+. +...|+... +-.++...+... +....|....
T Consensus 245 --g~--------~~~~l~~l~~nLvP~P~l~fl~--~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~~~l 312 (434)
T cd02186 245 --GA--------LNVDLNEFQTNLVPYPRIHFPL--VSYAPIISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYM 312 (434)
T ss_pred --Cc--------cCCCHHHHHhhccccccceeec--cccCcccchhhccccCCCHHHHHHHHhCccceeeecCCcchhHH
Confidence 54 5689999999999999999943 234554322 112222333211 1000100000
Q ss_pred ---------------------------CCcccCCCCCc-cceeccC--------------ceeeeecchhhHHHHHHHHH
Q 011960 385 ---------------------------SPFVGSSPRGS-LEVHSIP--------------MAVRLRSSSAILPFLENRLG 422 (474)
Q Consensus 385 ---------------------------~~~~~~~~~~~-~~~~sip--------------~~~~L~n~t~i~~~~~~~~~ 422 (474)
..|+.|-|.+. ..++..| .++.|+|+|+|.++|+++++
T Consensus 313 a~~~~~RG~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~f~~i~~ 392 (434)
T cd02186 313 ACCLLYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDH 392 (434)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceEEEEecCchHHHHHHHHHHH
Confidence 13444444432 3444432 25679999999999999999
Q ss_pred HHhchhhhccccccceeeccCCChhhHHHHHHHHHHHHhcccC
Q 011960 423 NLRRYGLQRGALGAELLRNWGFADDELYDMGEMLSKMVSTMKP 465 (474)
Q Consensus 423 ~f~~l~~rr~~~~~~~y~~~G~~~~ef~E~~e~l~~l~~~Y~~ 465 (474)
+|++|+.||++| |||+++|||++||.||+++|++|+++|++
T Consensus 393 ~f~~mf~rkAfl--h~Y~~~Gmee~ef~ea~~~l~~li~~Y~~ 433 (434)
T cd02186 393 KFDLMYSKRAFV--HWYVGEGMEEGEFSEAREDLAALEKDYEE 433 (434)
T ss_pred HHHHHHhhcchh--hhhcCcCCchHHHHHHHHHHHHHHHHHhh
Confidence 999998777766 99999999999999999999999999985
No 9
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=1.1e-71 Score=580.70 Aligned_cols=370 Identities=19% Similarity=0.242 Sum_probs=302.6
Q ss_pred CccEEEEecCCchhHHHHHHHHHHHHHcC-CCCCCCCCccccccccccccccccc-c--cCCCceeeeeeeeeeccccc-
Q 011960 1 MREIVTVQVGGFANFIGSHFWNFQDELLG-LASDPNNDPVFRNQCLNMDVLYRTG-E--TQQGVLTYTPRLLSVGFQGS- 75 (474)
Q Consensus 1 MrEIItlq~Gq~gN~IG~hfWn~q~~~~~-~~~~~~~~~~~~~~~~~~~v~Fr~g-~--t~~g~~~y~PR~llvDl~~~- 75 (474)
|||||+||+||||||||..||++++.||+ +++++.. +...++||++. + +..|..+|+||+|+||+||+
T Consensus 1 m~EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~-------~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~v 73 (465)
T PTZ00387 1 PREIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQY-------DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGV 73 (465)
T ss_pred CCcEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcc-------cccccceecccccccccCCCccccCcccccCCCccH
Confidence 99999999999999999999999999999 6776643 33678999832 1 22342359999999999999
Q ss_pred cccccccccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhcccccccccCCCCCCCCcccccccccccchhc
Q 011960 76 LGSMSSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDISLYEL 155 (474)
Q Consensus 76 ~~sl~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~s~~~l 155 (474)
++.+++ ++ ++.+|++++ ++.+++|+||||++
T Consensus 74 i~~i~~---------------------------~~------~~~~f~~~~----~i~~~~GaGNnwa~------------ 104 (465)
T PTZ00387 74 LNQILK---------------------------SP------LGDLFDENF----FVSDVSGAGNNWAV------------ 104 (465)
T ss_pred HHHhhc---------------------------CC------cccccCccc----ccccCCCCCCCcCC------------
Confidence 666642 33 566889888 99999999999998
Q ss_pred CCCCCCCCccccccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeee
Q 011960 156 GGLWMDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLF 234 (474)
Q Consensus 156 ~~~~~~~~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~ 234 (474)
|+|..|.+. .|+++|+||+++|+||+||||+++|+++||| ||+|+.++|.|+||||++.++++
T Consensus 105 ----------G~~~~g~~~------~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~l~d~y~~~~~~~~ 168 (465)
T PTZ00387 105 ----------GHMEYGDKY------IDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPHVFRFCP 168 (465)
T ss_pred ----------CcccccHHH------HHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHHHHHHHhcccCceeee
Confidence 889999877 8999999999999999999999999999999 99999999999999999999999
Q ss_pred eecCCCccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCC---------------------
Q 011960 235 AVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIEN--------------------- 293 (474)
Q Consensus 235 ~v~p~~~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~--------------------- 293 (474)
+|+|+. ..+++++|||++|+|++|.+++|+++|++|++|.+ +|.+.+.++.
T Consensus 169 ~V~P~~-------~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (465)
T PTZ00387 169 VVFPSA-------VDDVITSPYNSFFALRELIEHADCVLPLDNDALAN-IADSALSRKKKKLAKGNIKRGPQPHKYSVAK 240 (465)
T ss_pred EecCCC-------CCcceeccchhHHHHHHHHhhCCeEEEeehHHHHH-HHHhhcCcccccccccccccccccccccccc
Confidence 999974 46788999999999999999999999999999998 7876665552
Q ss_pred ------CCcchHHHHHHHHHhhcccCCcCCCCCCCCCcccccCccChhhHhhccccccccceeeccccCCCCCCC-----
Q 011960 294 ------EKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPAL----- 362 (474)
Q Consensus 294 ------~~~~~~n~liA~~l~t~T~~~R~~~~g~~~~~~~~~~~~~l~~~~~~L~~~~r~~~~~~~~~~~p~~~~----- 362 (474)
+.+.++|.|||++|.++|.++||+ |. .++++++++.+|+|+||.||+. +...|+...
T Consensus 241 ~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~--g~--------~n~dl~~i~~nLvP~P~lhFl~--~s~~P~~~~~~~~~ 308 (465)
T PTZ00387 241 PTETKKLPYDKMNNIVAQLLSNLTSSMRFE--GS--------LNVDINEITTNLVPYPRLHFLT--SSIAPLVSLKDVAV 308 (465)
T ss_pred ccccccccHHHHHHHHHhhhccccceeecC--Cc--------cCCCHHHHHhhcCCCCCceeec--cccCcccchhhccc
Confidence 778999999999999999999998 65 6789999999999999999953 334454322
Q ss_pred ---CchhhHHHHHhc---cCCCCCCCcC---------------------------CCcccCCCCCc-cceeccCc-----
Q 011960 363 ---NGKQHEQSLLGN---LQPLTPELLN---------------------------SPFVGSSPRGS-LEVHSIPM----- 403 (474)
Q Consensus 363 ---~~~~~~~~l~~~---~~~~tp~~~~---------------------------~~~~~~~~~~~-~~~~sip~----- 403 (474)
+-.++...++.. +....|.... ..|+.|-|.+. ..+|..|+
T Consensus 309 ~~~s~~~l~~~l~~~~~~m~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~lk~~~~f~~W~p~~~~~~~~~~~~~~~~~ 388 (465)
T PTZ00387 309 GPRRLDQMFKDCLDPDHQMVAATPEAGKYLATALIVRGPQNVSDVTRNILRLKEQLNMIYWNEDGFKTGLCNVSPLGQPY 388 (465)
T ss_pred ccCCHHHHHHHHhcccCeeeecCCCcchHHHHHHHHcCCCChHHHHHHHHHHhccccccccCCCceEEEeeccCCCCCce
Confidence 112222333321 1100110000 13444555443 45666653
Q ss_pred -eeeeecchhhHHHHHHHHHHHhchhhhccccccceeeccCCChhhHHHHHHHHHHHHhcccC
Q 011960 404 -AVRLRSSSAILPFLENRLGNLRRYGLQRGALGAELLRNWGFADDELYDMGEMLSKMVSTMKP 465 (474)
Q Consensus 404 -~~~L~n~t~i~~~~~~~~~~f~~l~~rr~~~~~~~y~~~G~~~~ef~E~~e~l~~l~~~Y~~ 465 (474)
++.|+|+|+|..+|++++++|.+|+.||++| |||+ +|||++||.||++.|++|+++|++
T Consensus 389 s~~~lsNst~I~~~f~~i~~~f~~mf~rkAfl--H~Y~-egmee~eF~ea~~~l~~li~~Y~~ 448 (465)
T PTZ00387 389 SLLCLANNCCIRNKFESMLERFNKLYKRKSHV--HHYT-EYLEQAYFDETLETIQNLIDDYAY 448 (465)
T ss_pred eEEEecCChHHHHHHHHHHHHHHHHHhhcchH--Hhhh-cccchHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999998777766 9999 899999999999999999999986
No 10
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=3.3e-71 Score=578.54 Aligned_cols=375 Identities=20% Similarity=0.273 Sum_probs=308.3
Q ss_pred CccEEEEecCCchhHHHHHHHHHHHHHcCCCCCCCCCcccccccccccccccccccCCCceeeeeeeeeeccccc-cccc
Q 011960 1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGS-LGSM 79 (474)
Q Consensus 1 MrEIItlq~Gq~gN~IG~hfWn~q~~~~~~~~~~~~~~~~~~~~~~~~v~Fr~g~t~~g~~~y~PR~llvDl~~~-~~sl 79 (474)
||||||||+||||||||..||++++.||++++++..+..........++||+ ++.+| +|+||+|+||++++ +..+
T Consensus 1 m~Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~--e~~~~--~~~pRav~iD~e~~~i~~i 76 (447)
T PLN00220 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYN--EASGG--RYVPRAVLMDLEPGTMDSV 76 (447)
T ss_pred CCceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceec--cCCCC--cccceeEecCCcHHHHHHH
Confidence 9999999999999999999999999999998876543211111235678998 66677 99999999999999 6655
Q ss_pred cccccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhcccccccccCCCCCCCCcccccccccccchhcCCCC
Q 011960 80 SSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDISLYELGGLW 159 (474)
Q Consensus 80 ~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~s~~~l~~~~ 159 (474)
+ .++ ++.|+++++ ++.+++|+|||||+
T Consensus 77 ~---------------------------~~~------~~~~~~~~~----~~~~~~gagnnwa~---------------- 103 (447)
T PLN00220 77 R---------------------------SGP------YGQIFRPDN----FVFGQSGAGNNWAK---------------- 103 (447)
T ss_pred h---------------------------cCc------cccccCccc----eEecccCCCCccCc----------------
Confidence 3 233 566788888 99999999999999
Q ss_pred CCCCccccccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeeecC
Q 011960 160 MDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVRS 238 (474)
Q Consensus 160 ~~~~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v~p 238 (474)
|+|+.|.++ .|.++|+||+++|+||+||||+++|+++||| ||+|+.++++|+||||++.+++++|+|
T Consensus 104 ------G~~~~g~~~------~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~~~~~~~~~v~P 171 (447)
T PLN00220 104 ------GHYTEGAEL------IDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171 (447)
T ss_pred ------eeecccHHH------HHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhccccceeeeEEEC
Confidence 899999988 8999999999999999999999999999999 999999999999999999999999999
Q ss_pred CCccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcCCC
Q 011960 239 PSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEP 318 (474)
Q Consensus 239 ~~~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~~~ 318 (474)
.+ ..+++++++||++|+|++|.+++|++++++|++|.+ +|.+.+.++.+++.++|.+||++|.++|+++||+
T Consensus 172 ~~------~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~-i~~~~~~i~~~sf~~~N~lIa~~is~it~slRFp- 243 (447)
T PLN00220 172 SP------KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYD-ICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFP- 243 (447)
T ss_pred CC------cCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHH-HHHHhhcCCCCChHHHHhHhhccccccchhhccC-
Confidence 86 457899999999999999999999999999999998 8988888999999999999999999999999999
Q ss_pred CCCCCCcccccCccChhhHhhccccccccceeeccccCCCCCCCC--------chhhHHHHHh---ccCCCCCCCcC---
Q 011960 319 VGPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPALN--------GKQHEQSLLG---NLQPLTPELLN--- 384 (474)
Q Consensus 319 ~g~~~~~~~~~~~~~l~~~~~~L~~~~r~~~~~~~~~~~p~~~~~--------~~~~~~~l~~---~~~~~tp~~~~--- 384 (474)
|. .+.++++++.+|+|+|+.||+.. ...|+.... -.++...+.. .+....|....
T Consensus 244 -G~--------ln~~l~~l~~nLVP~P~l~Fl~~--s~~P~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~gk~la 312 (447)
T PLN00220 244 -GQ--------LNSDLRKLAVNLIPFPRLHFFMV--GFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLT 312 (447)
T ss_pred -Cc--------CCccHHHHHHHhCCccceeEeec--ccCcccccccccccccCHHHHHHHHHhhhhcccccCCCCchhHH
Confidence 65 56789999999999999998422 233432211 1122222221 11111111000
Q ss_pred --------------------------CCcccCCCCCc-cceeccCc------eeeeecchhhHHHHHHHHHHHhchhhhc
Q 011960 385 --------------------------SPFVGSSPRGS-LEVHSIPM------AVRLRSSSAILPFLENRLGNLRRYGLQR 431 (474)
Q Consensus 385 --------------------------~~~~~~~~~~~-~~~~sip~------~~~L~n~t~i~~~~~~~~~~f~~l~~rr 431 (474)
..|+.|.|.+. ..+|..|+ ++.|+|+|+|..+|+++.++|++|+.||
T Consensus 313 ~~~~~RG~~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~rk 392 (447)
T PLN00220 313 ASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRK 392 (447)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCCCCcceeeEEecCchHHHHHHHHHHHHHHHHHhcC
Confidence 13444555443 45555543 5679999999999999999999998788
Q ss_pred cccccceeeccCCChhhHHHHHHHHHHHHhcccC
Q 011960 432 GALGAELLRNWGFADDELYDMGEMLSKMVSTMKP 465 (474)
Q Consensus 432 ~~~~~~~y~~~G~~~~ef~E~~e~l~~l~~~Y~~ 465 (474)
++| |||+++|||++||.||++.|++|+++|++
T Consensus 393 Afl--h~Y~~~Gmee~ef~ea~~~l~~li~~Y~~ 424 (447)
T PLN00220 393 AFL--HWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424 (447)
T ss_pred cch--hhhcccCCchHHHHHHHHHHHHHHHHHHH
Confidence 766 99999999999999999999999999964
No 11
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=9e-71 Score=571.83 Aligned_cols=374 Identities=21% Similarity=0.283 Sum_probs=305.8
Q ss_pred ccEEEEecCCchhHHHHHHHHHHHHHcCCCCCCCCCcccccccccccccccccccCCCceeeeeeeeeeccccc-ccccc
Q 011960 2 REIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGS-LGSMS 80 (474)
Q Consensus 2 rEIItlq~Gq~gN~IG~hfWn~q~~~~~~~~~~~~~~~~~~~~~~~~v~Fr~g~t~~g~~~y~PR~llvDl~~~-~~sl~ 80 (474)
||||+||+||||||||.+||++++.||++++++.............++||+ |+.+| +|+||+|+||++++ +..|+
T Consensus 1 ~eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~--e~~~~--~~~pRav~iD~e~~~i~~i~ 76 (425)
T cd02187 1 REIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFN--EASGG--KYVPRAILVDLEPGTMDSVR 76 (425)
T ss_pred CceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEE--ecCCC--ceeeeeeeccCChhhhhhhh
Confidence 799999999999999999999999999998877542211111235678998 56667 99999999999998 66653
Q ss_pred ccccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhcccccccccCCCCCCCCcccccccccccchhcCCCCC
Q 011960 81 SRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDISLYELGGLWM 160 (474)
Q Consensus 81 ~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~s~~~l~~~~~ 160 (474)
+ .+ ++.|+++++ ++.|++++||||++
T Consensus 77 ~---------------------------~~------~~~l~~~~~----~~~~~~gagnnwa~----------------- 102 (425)
T cd02187 77 S---------------------------GP------FGQLFRPDN----FVFGQSGAGNNWAK----------------- 102 (425)
T ss_pred c---------------------------Cc------ccceecCcc----eeeccCCCCCccCc-----------------
Confidence 2 23 445778887 89999999999998
Q ss_pred CCCccccccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeeecCC
Q 011960 161 DPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVRSP 239 (474)
Q Consensus 161 ~~~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v~p~ 239 (474)
|+|..|.++ .|+++|+||+++|+||++|||+++|+++||| ||+|++++|+|+|||||+.+++++|+|.
T Consensus 103 -----G~~~~G~~~------~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~~~~~~~~V~P~ 171 (425)
T cd02187 103 -----GHYTEGAEL------IDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSVFPS 171 (425)
T ss_pred -----cchhhcHHH------HHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCCcceEEEEEecC
Confidence 889889887 8999999999999999999999999999999 9999999999999999999999999998
Q ss_pred CccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcCCCC
Q 011960 240 SSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEPV 319 (474)
Q Consensus 240 ~~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~~~~ 319 (474)
. ...++++++||++|+|++|.+++|++++++|++|.+ +|.+.++++.+++.++|++||++|+++|+++||+
T Consensus 172 ~------~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~-i~~~~~~~~~~~~~~~N~~ia~~is~~t~s~Rfp-- 242 (425)
T cd02187 172 P------KVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYD-ICFRTLKLTNPTYGDLNHLVSAVMSGITTCLRFP-- 242 (425)
T ss_pred C------CcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHH-HHHHhcCCCCCCHHHHHHHHhccccccceeeecC--
Confidence 6 345889999999999999999999999999999999 8988888889999999999999999999999999
Q ss_pred CCCCCcccccCccChhhHhhccccccccceeeccccCCCCCCCC--------chhhHHHHHh---ccCCCCCCCcC----
Q 011960 320 GPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPALN--------GKQHEQSLLG---NLQPLTPELLN---- 384 (474)
Q Consensus 320 g~~~~~~~~~~~~~l~~~~~~L~~~~r~~~~~~~~~~~p~~~~~--------~~~~~~~l~~---~~~~~tp~~~~---- 384 (474)
|. .+.+|++++.+|+|+|+.||+. +...|+.... ..++...+.. .+....|....
T Consensus 243 g~--------~n~dl~~l~~nLvP~P~~~fl~--~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~~~~~~~~la~ 312 (425)
T cd02187 243 GQ--------LNSDLRKLAVNMVPFPRLHFFM--PGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTA 312 (425)
T ss_pred Cc--------cccCHHHHHHhcCCCCCceecc--cccCccccccccccccCCHHHHHHHHhCccCeeeccCCCcchHHHH
Confidence 55 6789999999999999999943 2344543221 1122222211 01011111000
Q ss_pred -------------------------CCcccCCCCCc-cceeccCc------eeeeecchhhHHHHHHHHHHHhchhhhcc
Q 011960 385 -------------------------SPFVGSSPRGS-LEVHSIPM------AVRLRSSSAILPFLENRLGNLRRYGLQRG 432 (474)
Q Consensus 385 -------------------------~~~~~~~~~~~-~~~~sip~------~~~L~n~t~i~~~~~~~~~~f~~l~~rr~ 432 (474)
..|+.|.|.+. ..++..|+ ++.|+|+|+|..+|+++.++|++|+.||+
T Consensus 313 ~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~kkA 392 (425)
T cd02187 313 AAIFRGRVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKA 392 (425)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCCCCcceeEEEecCCcHHHHHHHHHHHHHHHHHhcCc
Confidence 13444544433 44555443 56799999999999999999999987777
Q ss_pred ccccceeeccCCChhhHHHHHHHHHHHHhcccC
Q 011960 433 ALGAELLRNWGFADDELYDMGEMLSKMVSTMKP 465 (474)
Q Consensus 433 ~~~~~~y~~~G~~~~ef~E~~e~l~~l~~~Y~~ 465 (474)
+| |||+++|||++||.||++.|++|+++|++
T Consensus 393 fl--h~Y~~~G~ee~ef~Ea~~~l~~li~~Y~~ 423 (425)
T cd02187 393 FL--HWYTGEGMDEMEFTEAESNMNDLVSEYQQ 423 (425)
T ss_pred ch--hhhhccCCchHHHHHHHHHHHHHHHHHHh
Confidence 66 99999999999999999999999999986
No 12
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=100.00 E-value=6.1e-70 Score=527.59 Aligned_cols=376 Identities=20% Similarity=0.305 Sum_probs=306.2
Q ss_pred CccEEEEecCCchhHHHHHHHHHHHHHcCCCCCCCCCcccccccccccccccccccCCCceeeeeeeeeeccccc-cccc
Q 011960 1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGS-LGSM 79 (474)
Q Consensus 1 MrEIItlq~Gq~gN~IG~hfWn~q~~~~~~~~~~~~~~~~~~~~~~~~v~Fr~g~t~~g~~~y~PR~llvDl~~~-~~sl 79 (474)
||||||||+||||||||..||..++.||+++++|...........+.+|||+ +..++ .|+||||+|||||. ++.+
T Consensus 2 ~~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFy--qadd~--~yipRAvLvDlEPrVIn~~ 77 (448)
T KOG1374|consen 2 PREIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFY--QADDN--HYIPRAVLVDLEPRVINQI 77 (448)
T ss_pred CceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCcccccccee--eccCC--ccccceeeeccchHHHhcc
Confidence 6899999999999999999999999999999998753222234467899999 66777 99999999999999 5444
Q ss_pred cccccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhccccccccc--CCCCCCCCcccccccccccchhcCC
Q 011960 80 SSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMIN--GTSSGKSDSQREIQDKDISLYELGG 157 (474)
Q Consensus 80 ~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~~~--~~~~~~~n~a~~~~~~~~s~~~l~~ 157 (474)
. +.| +..|++++| +.. ...|+|||||-
T Consensus 78 ~---------------------------~~~------~s~l~n~en----i~~s~~ggGAGNNWA~-------------- 106 (448)
T KOG1374|consen 78 L---------------------------SSP------YSGLYNPEN----IFLSDHGGGAGNNWAS-------------- 106 (448)
T ss_pred c---------------------------cch------hhcccCccc----eEEecCCCCccccccc--------------
Confidence 2 344 777888887 443 34677899995
Q ss_pred CCCCCCccccccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeee
Q 011960 158 LWMDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAV 236 (474)
Q Consensus 158 ~~~~~~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v 236 (474)
.|.+|..+ .|+++|.|+|++|.||+|.||+++||++||| ||+||.++|.|+|+||||-+.+|+|
T Consensus 107 ---------GY~~G~~~------~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~drypkkliqtysV 171 (448)
T KOG1374|consen 107 ---------GYSQGERV------QEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDRYPKKLVQTYSV 171 (448)
T ss_pred ---------ccccchhh------HHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHhchhhhheeeee
Confidence 78889888 9999999999999999999999999999999 9999999999999999999999999
Q ss_pred cCCCccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcC
Q 011960 237 RSPSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRM 316 (474)
Q Consensus 237 ~p~~~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~ 316 (474)
+|... +.+++++||||++|+|++|.+++|+++.++|.+|.+ +|...++++.+++.|+|.|||.+|++.|.|+||
T Consensus 172 fPn~d-----~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~r-ia~~~l~i~~ptF~~iNqLvstims~st~t~r~ 245 (448)
T KOG1374|consen 172 FPNQD-----ESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHR-IAADRLHIQNPTFSQINQLVSTIMSASTTTLRY 245 (448)
T ss_pred ccCCC-----CccceEEecchHHHHHHHHhhCCCeEEEeccHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHhhccccccc
Confidence 99752 578999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred CCCCCCCCcccccCccChhhHhhccccccccceeeccccCCCCCCCCchh----------hHHHHHhc---cC----CCC
Q 011960 317 EPVGPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPALNGKQ----------HEQSLLGN---LQ----PLT 379 (474)
Q Consensus 317 ~~~g~~~~~~~~~~~~~l~~~~~~L~~~~r~~~~~~~~~~~p~~~~~~~~----------~~~~l~~~---~~----~~t 379 (474)
+ +. .+.+|.++...|+|.|+.|| .++.++|+.+..... +.+.|++. +. +..
T Consensus 246 p--~Y--------m~n~l~~l~~~LiP~P~lhf--l~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pkn~mvs~~~~~~ 313 (448)
T KOG1374|consen 246 P--GY--------MNNDLIGLYASLIPTPELHF--LMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPKNMMVSTADDLS 313 (448)
T ss_pred h--hh--------ccCcHHHHHhhcCCCCCeee--eeccCCcccChhhhhhhhhcchHHHHHHHHhCcchhhhhcccccc
Confidence 8 55 66789999999999999999 555788876542111 11233321 10 111
Q ss_pred CC---CcC--------------------------CCcccCCCCCccce-eccC--------ceeeeecchhhHHHHHHHH
Q 011960 380 PE---LLN--------------------------SPFVGSSPRGSLEV-HSIP--------MAVRLRSSSAILPFLENRL 421 (474)
Q Consensus 380 p~---~~~--------------------------~~~~~~~~~~~~~~-~sip--------~~~~L~n~t~i~~~~~~~~ 421 (474)
+. +.. ++.||.++.--.+. ...| ....|+|+|+|...|++++
T Consensus 314 ~~~~~~si~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~~~vSglml~N~t~i~~lfe~~~ 393 (448)
T KOG1374|consen 314 GNPCYISILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRAHRVSGLMLANSTSIVSLFERIL 393 (448)
T ss_pred CCcchHhHHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccccceeeeeeccchhHHHHHHHHH
Confidence 11 000 12333222100110 0111 2346999999999999999
Q ss_pred HHHhchhhhccccccceeeccCCChh---hHHHHHHHHHHHHhcccCC
Q 011960 422 GNLRRYGLQRGALGAELLRNWGFADD---ELYDMGEMLSKMVSTMKPH 466 (474)
Q Consensus 422 ~~f~~l~~rr~~~~~~~y~~~G~~~~---ef~E~~e~l~~l~~~Y~~~ 466 (474)
.+|+||.+||++| +-|+..||.++ ||.|+++.++.|+++|...
T Consensus 394 ~qydklrk~~AFl--d~y~k~~if~~~~~efdesr~ivq~lv~eY~a~ 439 (448)
T KOG1374|consen 394 GQYDKLRKKRAFL--DQYRKFDIFEDDLDEFDESREIVQQLVDEYHAA 439 (448)
T ss_pred HHHHHHHHHHHHH--HHhhhcccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 9999998777766 99999999999 9999999999999999853
No 13
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=9.3e-67 Score=544.38 Aligned_cols=376 Identities=18% Similarity=0.218 Sum_probs=299.2
Q ss_pred EEEEecCCchhHHHHHHHHHHHHHcCCCCCCCCCcccccccccccccccccccCCCceeeeeeeeeeccccc-ccccccc
Q 011960 4 IVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGS-LGSMSSR 82 (474)
Q Consensus 4 IItlq~Gq~gN~IG~hfWn~q~~~~~~~~~~~~~~~~~~~~~~~~v~Fr~g~t~~g~~~y~PR~llvDl~~~-~~sl~~~ 82 (474)
|||||+||||||||..||++++.||++++++... ......++||. ++.++ +|+||+|+||+||+ ++++++
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~----~~~~~~~~ff~--e~~~~--~~~pRav~iD~ep~vi~~i~~- 72 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYK----YERDAQERFFS--EKSDG--QPIARSVLVDMEPKVIESTLS- 72 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCcc----ccccccceeec--ccCCC--CcCCceeecCCCchHHHHhhc-
Confidence 8999999999999999999999999998776532 12336789998 66666 89999999999999 776643
Q ss_pred ccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhcccccccccCCCCCCCCcccccccccccchhcCCCCCCC
Q 011960 83 GLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDISLYELGGLWMDP 162 (474)
Q Consensus 83 g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~s~~~l~~~~~~~ 162 (474)
++.. .+.+|++++ ++.+++|+|||||+
T Consensus 73 --------------------------~~~~----~~~~f~~~~----~~~~~~gagnnwa~------------------- 99 (446)
T cd02189 73 --------------------------KSSG----GTWKYDKKN----VICQQSGSGNNWAY------------------- 99 (446)
T ss_pred --------------------------CCCC----cccccCchh----eeecCCCCccchhc-------------------
Confidence 1100 123577777 89999999999998
Q ss_pred CccccccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeeecCCCc
Q 011960 163 QEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVRSPSS 241 (474)
Q Consensus 163 ~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v~p~~~ 241 (474)
|+|..|.++ .|+++|+||+++|+||++|||+++||++||| ||+|+.++|+|+||||++++++++|+|+.
T Consensus 100 ---Gy~~~g~~~------~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~~~~~~~~v~P~~- 169 (446)
T cd02189 100 ---GYYVHGPQI------KEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLLNIVVWPYT- 169 (446)
T ss_pred ---cccccchhh------HHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCccceeeeeccCCC-
Confidence 889889887 9999999999999999999999999999999 99999999999999999999999999964
Q ss_pred cccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcCCCCCC
Q 011960 242 QMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEPVGP 321 (474)
Q Consensus 242 ~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~~~~g~ 321 (474)
.+++++++||++|+|++|.+++|++++++|++|.+ +|.+.++++.+++.++|.+||++|.++|+|.|+.+...
T Consensus 170 ------~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~-~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~~r~~~~~~ 242 (446)
T cd02189 170 ------TGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHR-ICSKLRNLKNVSLSDINKVIAHQLASLLQPSLDSTGSN 242 (446)
T ss_pred ------CCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHH-HHHHhcCCCCCCHHHHHHHHHHHHHHHhhHhhccCccc
Confidence 46889999999999999999999999999999998 89888889999999999999999999999999842110
Q ss_pred CCCcccccCccChhhHhhccccccccceeeccccCCCCCCC--------CchhhHHHHHhccCC---C------------
Q 011960 322 TADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPAL--------NGKQHEQSLLGNLQP---L------------ 378 (474)
Q Consensus 322 ~~~~~~~~~~~~l~~~~~~L~~~~r~~~~~~~~~~~p~~~~--------~~~~~~~~l~~~~~~---~------------ 378 (474)
..+....+.+|++++.+|+|+|+.||+.. ..+|+... +-.++...+.+.+.+ +
T Consensus 243 --~~~~~~~~~~l~~l~~nLvP~P~~~fl~~--s~~P~~~~~~~~~~~~~~~~l~~~l~qm~~~~~~~~~~~~~~~~~~~ 318 (446)
T cd02189 243 --GALAGRSTNPLNDLVEDLCPHPAYKLLTI--RSLPQMPEKSLAFSTFSWSALLKRLHQMLIAGSFMEEGIDWTVRPEG 318 (446)
T ss_pred --ccccccccCCHHHHHhhCcCCCCceeeec--ccCCcccccccccccCCHHHHHHHHHHhhcccccccccccccccccc
Confidence 00111246789999999999999999432 34443221 122333333211110 0
Q ss_pred ----------CCCCcC------------------------CCcccCCCCCc-cceeccCc--------eeeeecchhhHH
Q 011960 379 ----------TPELLN------------------------SPFVGSSPRGS-LEVHSIPM--------AVRLRSSSAILP 415 (474)
Q Consensus 379 ----------tp~~~~------------------------~~~~~~~~~~~-~~~~sip~--------~~~L~n~t~i~~ 415 (474)
.|.... ..|+.|.|... ..++..++ ++.|+|+++|..
T Consensus 319 ~~~~~~~~~~~~~~~~~ls~~~i~RG~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~ 398 (446)
T cd02189 319 SAASLLSGNKSTHFNKSLANLLILRGKDVTSADERKFRDPLLYVNWSPSPVRFSISSHKRSFSKYEKSVTLVSNSQTIID 398 (446)
T ss_pred ccccccccccCCcccceeeeeeeeeCCCchHHHHHHHhccCcCCCcCCCCEeeeecCCCCCcCCcceeEEEEeCCchHHH
Confidence 000000 12334444333 33433332 467999999999
Q ss_pred HHHHHHHHHhchhhhccccccceeeccCCChhhHHHHHHHHHHHHhccc
Q 011960 416 FLENRLGNLRRYGLQRGALGAELLRNWGFADDELYDMGEMLSKMVSTMK 464 (474)
Q Consensus 416 ~~~~~~~~f~~l~~rr~~~~~~~y~~~G~~~~ef~E~~e~l~~l~~~Y~ 464 (474)
+|++++++|++|+.||++| |||+++|||++||.||++.|++|+++|+
T Consensus 399 ~l~~i~~~f~~mf~~rAfl--H~Y~~~Gmee~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 399 PLDNILEKAWNMFASGAYL--HQYEKYGLEEEDFLDAFATLEQIIASYK 445 (446)
T ss_pred HHHHHHHHHHHHHhcCcch--hhhhccCCcHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998777766 9999999999999999999999999996
No 14
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=3.3e-64 Score=515.03 Aligned_cols=331 Identities=20% Similarity=0.278 Sum_probs=274.1
Q ss_pred ccEEEEecCCchhHHHHHHHHHHHHHcCCCCCCCCCcccccccccccccccccccCCCceeeeeeeeeeccccc-ccccc
Q 011960 2 REIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGS-LGSMS 80 (474)
Q Consensus 2 rEIItlq~Gq~gN~IG~hfWn~q~~~~~~~~~~~~~~~~~~~~~~~~v~Fr~g~t~~g~~~y~PR~llvDl~~~-~~sl~ 80 (474)
||||+||+||||||||..||++++.|| |+||+|+||+|++ +..++
T Consensus 1 ~Eii~i~~GqcGnqig~~~w~~~~~eh----------------------------------~~pR~v~iD~e~~~i~~i~ 46 (379)
T cd02190 1 REIIVVQVGQCGNQIGCRFWDLALREH----------------------------------LKARAVLIDMEEGVVNEIL 46 (379)
T ss_pred CceEEEecCcHHHHHHHHHHHHHHHhh----------------------------------cCCcceeccCChhHHHHHh
Confidence 799999999999999999999998765 6799999999999 66654
Q ss_pred ccccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhcccccccccCCCCCCCCcccccccccccchhcCCCCC
Q 011960 81 SRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDISLYELGGLWM 160 (474)
Q Consensus 81 ~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~s~~~l~~~~~ 160 (474)
+ ++ .+.++++++ ++.++.|+||||++
T Consensus 47 ~---------------------------~~------~~~~~~~~~----~~~~~~gaGnn~a~----------------- 72 (379)
T cd02190 47 K---------------------------GP------LRDLFDETQ----LVTDVSGAGNNWAV----------------- 72 (379)
T ss_pred c---------------------------Cc------cccccCccc----ccccCCCCCCCccc-----------------
Confidence 2 33 456788888 89999999999998
Q ss_pred CCCccccccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeeecCC
Q 011960 161 DPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVRSP 239 (474)
Q Consensus 161 ~~~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v~p~ 239 (474)
|+|..|.+. .|+++|+||+++|+||+||||+++|+++||| ||+|+.++|.|+||||++.+++++|+|.
T Consensus 73 -----G~~~~g~~~------~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~~~~~~v~P~ 141 (379)
T cd02190 73 -----GYHQYGHQY------IDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPS 141 (379)
T ss_pred -----eeeccchhH------HHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCccceEEEeecCC
Confidence 888888777 8999999999999999999999999999999 9999999999999999999999999998
Q ss_pred CccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcCCCC
Q 011960 240 SSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEPV 319 (474)
Q Consensus 240 ~~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~~~~ 319 (474)
. ..++++++||++|+|++|.+++|++++++|++|. .+.++|.+||++|.++|.+.||+
T Consensus 142 ~-------~~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~-------------~~~~~N~~ia~~i~~~t~~~rf~-- 199 (379)
T cd02190 142 A-------DDDVITSPYNSVLALRELIEHADCVLPIENQALV-------------PFDAMNSIVANLLLNLTSSMRFE-- 199 (379)
T ss_pred C-------CCCceecccHHHHHHHHHHHhCCeeEEeccHHHH-------------HHHHHHHHHHhhhcCccceeecc--
Confidence 6 3678899999999999999999999999999874 58899999999999999999998
Q ss_pred CCCCCcccccCccChhhHhhccccccccceeeccccCCCCCCC--------CchhhHHHHHh---ccCCCCCCCcC----
Q 011960 320 GPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPAL--------NGKQHEQSLLG---NLQPLTPELLN---- 384 (474)
Q Consensus 320 g~~~~~~~~~~~~~l~~~~~~L~~~~r~~~~~~~~~~~p~~~~--------~~~~~~~~l~~---~~~~~tp~~~~---- 384 (474)
|. .+++++++..+|+|+||.||+. +...|+... +..++...+++ .+....|....
T Consensus 200 g~--------~n~d~~~i~~nLvP~P~l~fl~--~s~~P~~~~~~~~~~~~s~~~l~~~l~~~~~~m~~~~~~~~kyls~ 269 (379)
T cd02190 200 GS--------LNVDLNEITMNLVPFPRLHFLV--SSLSPLYPLADVNVPPRRLDQMFSDAFSRNHQLIRADPKHGLYLAC 269 (379)
T ss_pred cc--------cccchhhhccccccCCCceecc--cccccccchhhccccCCCHHHHHHHHHccccceeecCCCcchHHHH
Confidence 54 6789999999999999999953 344554322 12233333332 11100111000
Q ss_pred -----------------------CCcccCCCCCc-cceeccCc------eeeeecchhhHHHHHHHHHHHhchhhhcccc
Q 011960 385 -----------------------SPFVGSSPRGS-LEVHSIPM------AVRLRSSSAILPFLENRLGNLRRYGLQRGAL 434 (474)
Q Consensus 385 -----------------------~~~~~~~~~~~-~~~~sip~------~~~L~n~t~i~~~~~~~~~~f~~l~~rr~~~ 434 (474)
..|+.|-|.+. ..+|..|+ ++.|+|+|+|..+|+++.++|++|+.||++|
T Consensus 270 ~~i~RG~~~~~ei~~~~~~l~~~~~fv~W~p~~~~~~~~~~~~~~~~~s~~~lsNsTsI~~~f~~i~~~f~~mf~krAfl 349 (379)
T cd02190 270 ALLVRGNVSVSDLRRNIERLKPKLKFVKWNQEGWKIGLCSVPPVGHSYSLLCLANNTCIKGTFTELKERFMKLYKRKAHL 349 (379)
T ss_pred HHHHcCCCCHHHHHHHHHHHhccCcCcCcCCCcEEEeecccCCCCcceeEEEecCccHHHHHHHHHHHHHHHHHhcccch
Confidence 13444444433 44555543 5679999999999999999999998777766
Q ss_pred ccceeeccCCChhhHHHHHHHHHHHHhcccC
Q 011960 435 GAELLRNWGFADDELYDMGEMLSKMVSTMKP 465 (474)
Q Consensus 435 ~~~~y~~~G~~~~ef~E~~e~l~~l~~~Y~~ 465 (474)
|||+++|||++||+||+++|++|+++|++
T Consensus 350 --h~Y~~eG~ee~ef~ea~~~l~~li~~Y~~ 378 (379)
T cd02190 350 --HHYTQVGMEQGDFTEALESISNLIDEYDY 378 (379)
T ss_pred --hhhhCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999975
No 15
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=100.00 E-value=4e-61 Score=475.93 Aligned_cols=339 Identities=39% Similarity=0.594 Sum_probs=273.8
Q ss_pred CccEEEEecCCchhHHHHHHHHHHHHHcCCCCCCCCCcccccccccc-cccccccccCCCceeeeeeeeeeccccccccc
Q 011960 1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNM-DVLYRTGETQQGVLTYTPRLLSVGFQGSLGSM 79 (474)
Q Consensus 1 MrEIItlq~Gq~gN~IG~hfWn~q~~~~~~~~~~~~~~~~~~~~~~~-~v~Fr~g~t~~g~~~y~PR~llvDl~~~~~sl 79 (474)
||||+|||||+++|++|+||||+|++++++.++.+..+. ++.+ |||||.|++..|..+|+||+|+||+++.+|++
T Consensus 1 mrEilTiq~g~~AnfvgtHfwN~Qea~l~~~~d~~~~~~----~~~~ndvlyr~g~~~~~~~tytPRl~l~Dl~g~~g~~ 76 (483)
T KOG2530|consen 1 MREILTIQVGHFANFVGTHFWNQQEAYLGLATDSEEPPG----ELCPNDVLYRTGRTDHGQITYTPRLLLVDLKGELGTL 76 (483)
T ss_pred CceEEEEEeeccccchhhhhcchhhHhhccCCcccCChh----hcCcchhhhhccccccCceeeccceeEEecCcccccc
Confidence 999999999999999999999999999999998776542 3344 89999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhccccccc----ccC--------CCCCCCCccc-ccc
Q 011960 80 SSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSM----ING--------TSSGKSDSQR-EIQ 146 (474)
Q Consensus 80 ~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~----~~~--------~~~~~~n~a~-~~~ 146 (474)
+..|.+|.+... .+...|.|++.+|++.|.++++|++.+...+.+.+.. +.. ...+|+||.| .|+
T Consensus 77 ~~~~~~~~~~~~--~~~~~~~g~~t~~~~~pr~~~~~~qs~~~~~~~l~~~~~~~i~~e~~~~~~~sv~~WsDFlr~~yH 154 (483)
T KOG2530|consen 77 KYQGELYNDSHL--GNEDAWKGKLTTIKTEPRDRNPELQSLLSAEAELPELNAEEIEYESDYSLLASVPSWSDFLRNHYH 154 (483)
T ss_pred ccchhhccchhc--ccccccccccceeccccccCChHHhhhccccCcccccchhhhccccccccccccchHHHHHHhhcC
Confidence 888888875433 2336899999999999999999999998865411000 000 0111223322 122
Q ss_pred cccccchhcCCCCCCCCccccccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCchhhHHHHHHHHHHHh
Q 011960 147 DKDISLYELGGLWMDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEY 226 (474)
Q Consensus 147 ~~~~s~~~l~~~~~~~~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~sG~~s~lle~L~DEY 226 (474)
|. +++.+++.|.|...|+.|+.|.++|++..+.+++.|+||++|||||.|||||++.|+++|||||++++||+|+|||
T Consensus 155 p~--tl~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~GfgG~as~~le~l~DEy 232 (483)
T KOG2530|consen 155 PR--TLNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFGGFASKLLEELQDEY 232 (483)
T ss_pred cc--ccccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCchhHHHHHHHHHHHhh
Confidence 22 5688999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeeeecCC-CccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHH
Q 011960 227 ANTPVLLFAVRSP-SSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAA 305 (474)
Q Consensus 227 ~~~~i~~~~v~p~-~~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~ 305 (474)
+++++++|+..|. .....+.++...-...+|.++++++|.++|++++||...... .+.|+++|++|.
T Consensus 233 s~~~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~~~------------~~~~~tsA~~a~ 300 (483)
T KOG2530|consen 233 SKKAVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTASGL------------GDLWETSAKLAR 300 (483)
T ss_pred cCCceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeecccccccc------------ccHHHHHHHHHh
Confidence 9999999999873 333322222233333799999999999999999999975421 157999999999
Q ss_pred HHhhcccCCcCCCCCCCCCcccccCccChhhHhhccccccccceeeccccCCCCCCCCchhhHHHHHhc
Q 011960 306 ALHSATLPYRMEPVGPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPALNGKQHEQSLLGN 374 (474)
Q Consensus 306 ~l~t~T~~~R~~~~g~~~~~~~~~~~~~l~~~~~~L~~~~r~~~~~~~~~~~p~~~~~~~~~~~~l~~~ 374 (474)
+++++|+|+|..++ ++-.++..|++..++ +..+..++|+|...++++.+.+.+.
T Consensus 301 ~~ds~tlptr~~ss-------------S~~~~~d~ls~l~~~--~~~~g~alpf~~~~Gq~l~dtL~ss 354 (483)
T KOG2530|consen 301 AFDSITLPTRLISS-------------SNLRQRDTLSYLGSK--VITLGYALPFPLVTGQSLEDTLVSS 354 (483)
T ss_pred hcccccccceecch-------------hHHHHHHHHHHHHHH--HHHhhhccCCCccccccchHHHHhc
Confidence 99999999999732 345566666666655 6677788999988888888777653
No 16
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=7.6e-60 Score=485.69 Aligned_cols=334 Identities=21% Similarity=0.305 Sum_probs=270.4
Q ss_pred cEEEEecCCchhHHHHHHHHHHHHHcCCCCCCCCCcccccccccccccccccccCCCceeeeeeeeeeccccc-cccccc
Q 011960 3 EIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGS-LGSMSS 81 (474)
Q Consensus 3 EIItlq~Gq~gN~IG~hfWn~q~~~~~~~~~~~~~~~~~~~~~~~~v~Fr~g~t~~g~~~y~PR~llvDl~~~-~~sl~~ 81 (474)
|||+||+||||||||.+||+++ |+||++++ +..+.+
T Consensus 1 eii~i~vGq~G~qig~~~w~~~-------------------------------------------i~iD~e~~~i~~i~~ 37 (382)
T cd06059 1 EIISIQIGQCGNQIGNKFWELL-------------------------------------------ILVDLDPRVINEILQ 37 (382)
T ss_pred CeEEEecCCcHHHHHHHHHHHH-------------------------------------------HcccCCcchhhhhhc
Confidence 8999999999999999999875 89999998 555532
Q ss_pred cccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhcccccccccCCCCCCCCcccccccccccchhcCCCCCC
Q 011960 82 RGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDISLYELGGLWMD 161 (474)
Q Consensus 82 ~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~s~~~l~~~~~~ 161 (474)
.+ .+.++++++ ++.++.++||||++
T Consensus 38 ---------------------------~~------~~~~~~~~~----~~~~~~g~gnn~a~------------------ 62 (382)
T cd06059 38 ---------------------------GQ------LSKLFDPNQ----LVNGKEGSGNNWAR------------------ 62 (382)
T ss_pred ---------------------------cc------ccccCCccc----EEeccccccccccc------------------
Confidence 22 344677777 88899999999998
Q ss_pred CCccccccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeeecCCC
Q 011960 162 PQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVRSPS 240 (474)
Q Consensus 162 ~~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v~p~~ 240 (474)
|++..|.+. .|+++|+||+++|+||++|||+++|+++||| ||+|+.++|.|+|||||+.+++++|+|..
T Consensus 63 ----G~~~~g~~~------~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~i~~~~v~P~~ 132 (382)
T cd06059 63 ----GYYTIGPEL------IDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSP 132 (382)
T ss_pred ----cccccCHHH------HHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccceEeEEEeccC
Confidence 888888666 8999999999999999999999999999999 99999999999999999999999999986
Q ss_pred ccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcCCCCC
Q 011960 241 SQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEPVG 320 (474)
Q Consensus 241 ~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~~~~g 320 (474)
...++++++||++|+|++|.+++|+++|++|++|.+ +|.+.+.++.+++.++|++||++|+++|+|+|++ |
T Consensus 133 ------~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~-~~~~~~~~~~~~~~~~N~iia~~l~~it~~~r~~--g 203 (382)
T cd06059 133 ------QGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYN-ILTRQLDIDEPSFDDLNNIIAQIISSITASLRFP--G 203 (382)
T ss_pred ------ccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHH-HHHHhcCCCCCChHHHHHHHHHhhcccccccccC--C
Confidence 334489999999999999999999999999999988 7887788888999999999999999999999998 5
Q ss_pred CCCCcccccCccChhhHhhccccccccceeeccccCCCCCCCC--------chhhHHHHHhccCC---CCCCCcC-----
Q 011960 321 PTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPALN--------GKQHEQSLLGNLQP---LTPELLN----- 384 (474)
Q Consensus 321 ~~~~~~~~~~~~~l~~~~~~L~~~~r~~~~~~~~~~~p~~~~~--------~~~~~~~l~~~~~~---~tp~~~~----- 384 (474)
. .++++++++.+|+|+|+.||+. +...|+.... -.++...++..-.. ..|....
T Consensus 204 ~--------~n~d~~~i~~~LvP~p~~~fl~--~s~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~la~~ 273 (382)
T cd06059 204 Y--------LNFDLRKLATNLVPFPRLHFLT--PSFAPLISYDSQTTEKLNLLQIINELFNNDNSFFSCDPTKGRYLAAA 273 (382)
T ss_pred C--------cCCCHHHHhhhcCCCCCceecc--ccccccccchhcccccCCHHHHHHHHhhcccceeecCCCcchHHHHH
Confidence 4 6789999999999999999843 2344543221 11122222211000 0010000
Q ss_pred ----------------------CCcccCCCCCc-cceeccCc-------eeeeecchhhHHHHHHHHHHHhchhhhcccc
Q 011960 385 ----------------------SPFVGSSPRGS-LEVHSIPM-------AVRLRSSSAILPFLENRLGNLRRYGLQRGAL 434 (474)
Q Consensus 385 ----------------------~~~~~~~~~~~-~~~~sip~-------~~~L~n~t~i~~~~~~~~~~f~~l~~rr~~~ 434 (474)
.....|.|.+. ..++..|+ ++.|+|+|+|..+|++++++|++|+.||+++
T Consensus 274 ~~~RG~~~~~~v~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~s~~~l~Nstsi~~~l~~i~~~f~~m~~~rAfl 353 (382)
T cd06059 274 LIFRGDVFQSEIQEAINKLKNKLNIQSWIPDGFKVSNCKKPPRAELGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFL 353 (382)
T ss_pred HHHhCCCCHHHHHHHHHHHHHhcccccCCCCcEEEEecCCCCCcCcceeEEEecCchHHHHHHHHHHHHHHHHHhhCcch
Confidence 01112333322 34444433 4679999999999999999999998888876
Q ss_pred ccceeeccCCChhhHHHHHHHHHHHHhcccC
Q 011960 435 GAELLRNWGFADDELYDMGEMLSKMVSTMKP 465 (474)
Q Consensus 435 ~~~~y~~~G~~~~ef~E~~e~l~~l~~~Y~~ 465 (474)
|||+++|||++||.||+++|++|+++|++
T Consensus 354 --h~Y~~~G~ee~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 354 --HWYLGEGMDEMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred --hhhcCcCCchHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999974
No 17
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=100.00 E-value=1.2e-57 Score=440.82 Aligned_cols=365 Identities=19% Similarity=0.274 Sum_probs=299.3
Q ss_pred CccEEEEecCCchhHHHHHHHHHHHHHcCCCCCCCCCccc--ccccccccccccccccCCCceeeeeeeeeecccccccc
Q 011960 1 MREIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVF--RNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGSLGS 78 (474)
Q Consensus 1 MrEIItlq~Gq~gN~IG~hfWn~q~~~~~~~~~~~~~~~~--~~~~~~~~v~Fr~g~t~~g~~~y~PR~llvDl~~~~~s 78 (474)
|||||.|++||.|-|||+.+|++.+.||++.+++....+. .......+.||. ++..| +++||+|+|||||.++.
T Consensus 1 m~e~i~ih~gqag~qi~naCwel~clEhgi~~~g~~p~~~~~~~~~~~~~tff~--~t~~~--k~~pr~~fVDlEPtide 76 (407)
T KOG1376|consen 1 MREIISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPDDKSVGKGDDSFNTFFS--ETGAG--KHVPRAVFVDLEPTIDE 76 (407)
T ss_pred CCcceeeeeccccccccchhHHHHHHHhcCccCCcCCCCccccccCcccceeec--ccccc--cccceeEEEeccCccch
Confidence 9999999999999999999999999999999998753321 111225678998 77777 99999999999998766
Q ss_pred ccccccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhcccccccccCCCCCCCCcccccccccccchhcCCC
Q 011960 79 MSSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDISLYELGGL 158 (474)
Q Consensus 79 l~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~s~~~l~~~ 158 (474)
++ +++ ++.||++++ ++.|+++++||+|+
T Consensus 77 vr---------------------------tG~------y~~lfHPeq----litGkedAannyAr--------------- 104 (407)
T KOG1376|consen 77 VR---------------------------TGT------YRQLFHPEQ----LITGKEDAANNYAR--------------- 104 (407)
T ss_pred hc---------------------------ccc------hhhccCchh----ccCcchHhhhhHHh---------------
Confidence 54 566 899999999 99999999999999
Q ss_pred CCCCCccccccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeeec
Q 011960 159 WMDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVR 237 (474)
Q Consensus 159 ~~~~~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v~ 237 (474)
++|++|+++ .|..+|+||+.++.|..||||.+||+.+||+ ||+++.++|.|.-+|+||..+.|+++
T Consensus 105 -------ghyt~g~e~------id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~~GKkskl~fsiy 171 (407)
T KOG1376|consen 105 -------GHYTIGKEI------IDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVDYGKKSKLEFSIY 171 (407)
T ss_pred -------hhhhcchhh------hHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhhhhhccccccccc
Confidence 999999998 9999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcCC
Q 011960 238 SPSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRME 317 (474)
Q Consensus 238 p~~~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~~ 317 (474)
|.+ ..+..+++|||.+|+.+...+++|+.++++|++.+. +|.+.+.+..|++.|+|++|+++++++|.++||.
T Consensus 172 pap------qvSt~vvePynsiltth~tle~sD~sf~vdnea~Yd-icr~~l~i~rPtyt~lnr~i~qVvSsitaSlrf~ 244 (407)
T KOG1376|consen 172 PAP------QVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYD-ICRRNLDIERPTYTNLNRLIAQVVSSITASLRFD 244 (407)
T ss_pred cCc------cccccccCCccccccceeecccCcceeecCchhhcc-hhhhccccCCccccchhhhHHhhhcccccccccC
Confidence 988 688899999999999999999999999999999999 9999999999999999999999999999999998
Q ss_pred CCCCCCCcccccCccChhhHhhccccccccceeeccccCCCCCCCCchhhHHHHHh----------ccCC----------
Q 011960 318 PVGPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAPALNGKQHEQSLLG----------NLQP---------- 377 (474)
Q Consensus 318 ~~g~~~~~~~~~~~~~l~~~~~~L~~~~r~~~~~~~~~~~p~~~~~~~~~~~~l~~----------~~~~---------- 377 (474)
|. .+++|.+|.++|+|+|- . +.+..+.+.... +-....+.. .++|
T Consensus 245 --g~--------lnvdl~efqTnlVpypl--y-ap~~s~~~a~he--~~sv~~it~~~fe~~~qmvkcDP~~gkyma~cl 309 (407)
T KOG1376|consen 245 --GA--------LNVDLTEFQTNLVPYPL--Y-APVISAEKAYHE--QLSVAEITNACFEPANQMVKCDPRHGKYMACCL 309 (407)
T ss_pred --Cc--------ccccHHHHHhhCCCCcc--c-ccchhhcccchh--hhhHHhhccccccccccccccCCccchHHHHHH
Confidence 65 78999999999999993 1 111112111110 000111110 0011
Q ss_pred -----CCCCCcC--------C---Ccc-cCCCCCccceeccC-ceeeeecchhhHHHHHHHHHHHhchhhhcccccccee
Q 011960 378 -----LTPELLN--------S---PFV-GSSPRGSLEVHSIP-MAVRLRSSSAILPFLENRLGNLRRYGLQRGALGAELL 439 (474)
Q Consensus 378 -----~tp~~~~--------~---~~~-~~~~~~~~~~~sip-~~~~L~n~t~i~~~~~~~~~~f~~l~~rr~~~~~~~y 439 (474)
+.|.-.. + .|. ..-+.+ ++..+. .+++|+|+|+|++.+.++-.+|+.||.||+++ |||
T Consensus 310 lyrgdvvP~~v~~A~a~ikt~rt~qfvd~~v~gg--~lakv~Ravcmlsnttai~eawarld~kfdLmyakrafV--hwy 385 (407)
T KOG1376|consen 310 LYRGDVVPKDVNAAIATIKTKRTIQFVDTVVPGG--DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFV--HWY 385 (407)
T ss_pred hccCCcCcccchHHHHhhhhccccccceeeccCc--chhhhceeeEecCCCcHHHHHHhhcchhhhhhhcchhee--eec
Confidence 1111110 0 011 011111 222222 35679999999999999999999999999976 999
Q ss_pred eccCCChhhHHHHHHHHHHHH
Q 011960 440 RNWGFADDELYDMGEMLSKMV 460 (474)
Q Consensus 440 ~~~G~~~~ef~E~~e~l~~l~ 460 (474)
.++||+++||.||+|.|..|.
T Consensus 386 vgegmeegef~ea~ed~a~le 406 (407)
T KOG1376|consen 386 VGEGMEEGEFSEAREDLAALE 406 (407)
T ss_pred cCCCccccchhhhhhhHHhhc
Confidence 999999999999999999875
No 18
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=100.00 E-value=9.1e-45 Score=353.21 Aligned_cols=300 Identities=20% Similarity=0.295 Sum_probs=247.2
Q ss_pred ccccccccccccccCCCceeeeeeeeeeccccc-cccccccccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhh
Q 011960 43 QCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGS-LGSMSSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLY 121 (474)
Q Consensus 43 ~~~~~~v~Fr~g~t~~g~~~y~PR~llvDl~~~-~~sl~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~ 121 (474)
+..+.+|+|. +...+ +|+||+|++||+|+ +++++ ++| ..+++
T Consensus 7 q~~~i~~~~~--~~~~~--~~~~ravlvdlepgs~dsv~---------------------------~~~------~g~~f 49 (369)
T KOG1375|consen 7 QLERINVYYN--EAGGG--KYVPRAVLVDLEPGSMDSVR---------------------------SGP------FGQIF 49 (369)
T ss_pred eeeeeeeeec--ccccc--cccchhheeeccCccccccc---------------------------cCc------cceec
Confidence 4557889997 44555 99999999999998 77775 455 67788
Q ss_pred hhcccccccccCCCCCCCCcccccccccccchhcCCCCCCCCccccccccccccccCcchhHHHHHHHHHhhhcCCCCcE
Q 011960 122 EEEQESFSMINGTSSGKSDSQREIQDKDISLYELGGLWMDPQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGF 201 (474)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~n~a~~~~~~~~s~~~l~~~~~~~~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGf 201 (474)
++++ ++++ + ++|+.|.++ .|. .||+||||
T Consensus 50 rp~~-------~~sg------~----------------------ghy~~ga~~------~ds----------~~dclqgf 78 (369)
T KOG1375|consen 50 RPDN-------GQSG------K----------------------GHYTEGAEL------VDS----------SCDCLQGF 78 (369)
T ss_pred cCcC-------CccC------c----------------------cceeeeeee------hhc----------ccchhhcc
Confidence 8875 3332 2 799999887 444 99999999
Q ss_pred EEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeeecCCCccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCC
Q 011960 202 QFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFL 280 (474)
Q Consensus 202 q~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v~p~~~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l 280 (474)
|+.|+++||+ +|+|++++..|++|||.+.+.++++.|+. .++++++|||+.|++++|.+++|.++|++|++|
T Consensus 79 ql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~-------ksd~vvepyna~ls~~ql~en~~et~cidNeal 151 (369)
T KOG1375|consen 79 QLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSP-------KSDTVVEPYNATLSVHQLVENADETFCIDNEAL 151 (369)
T ss_pred eeeeeccCccccCcchhhHHHHHHhccchhcccccccCcc-------cccceecccccccchhhhhcCCCcccccccHHH
Confidence 9999999999 99999999999999999999999999987 378999999999999999999999999999999
Q ss_pred CcccccccCccCCCCcchHHHHHHHHHhhcccCCcCCCCCCCCCcccccCccChhhHhhccccccccceeeccccCCCCC
Q 011960 281 NESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPAP 360 (474)
Q Consensus 281 ~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~~~~g~~~~~~~~~~~~~l~~~~~~L~~~~r~~~~~~~~~~~p~~ 360 (474)
++ +|...++...++ ++|..+||+ |. .+.+++++..+++|+||+|| .++...|+.
T Consensus 152 ~d-ic~~~lkl~~~~-------------g~tt~~rf~--g~--------lnadl~kl~vnmvpfp~lhf--fm~g~~pl~ 205 (369)
T KOG1375|consen 152 YD-ICFRTLKLKTPS-------------GVTTCLRFP--GQ--------LNADLTKLAVNMVPFPRLHF--FMPGFAPLT 205 (369)
T ss_pred HH-HHhhhhcccCCC-------------Cceeecccc--cc--------cchhhhhhhhccCCCcchhh--ccccccccc
Confidence 99 999988888776 899999999 55 67899999999999999998 677788876
Q ss_pred CCCchhhHH----HHHhcc-C--C-------CCC------C--CcC-----------CCcccCCCCCc-cceeccCc---
Q 011960 361 ALNGKQHEQ----SLLGNL-Q--P-------LTP------E--LLN-----------SPFVGSSPRGS-LEVHSIPM--- 403 (474)
Q Consensus 361 ~~~~~~~~~----~l~~~~-~--~-------~tp------~--~~~-----------~~~~~~~~~~~-~~~~sip~--- 403 (474)
....+++.. .+.+++ + + +|. + ..+ +.|..|.|++. +++|+||+
T Consensus 206 s~~~~q~~a~tv~eltqq~fdaknmm~a~dyLt~a~~~rGsmkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp~gl 285 (369)
T KOG1375|consen 206 SRGSQQYRALTVPELTQQMFDAKNMMTACDYLTVAAMFRGSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPGGL 285 (369)
T ss_pred cccccccccccccccccccccCcchhhhhhhhhhHHHhccchhhhHHHhhhccccCcchhhhhcccccceeeccCCCccc
Confidence 654444421 111111 0 0 000 0 000 25777777776 89999997
Q ss_pred ---eeeeecchhhHHHHHHHHHHHhchhhhccccccceeeccCCChhhHHHHHHHHHHHHhcccC
Q 011960 404 ---AVRLRSSSAILPFLENRLGNLRRYGLQRGALGAELLRNWGFADDELYDMGEMLSKMVSTMKP 465 (474)
Q Consensus 404 ---~~~L~n~t~i~~~~~~~~~~f~~l~~rr~~~~~~~y~~~G~~~~ef~E~~e~l~~l~~~Y~~ 465 (474)
.+.++|+++|+++|+++.++|.+|+.|+++| |||+++||++.||+||..++++|+.+|++
T Consensus 286 kms~tf~~n~taiqelf~~i~eqftamfrrkAfl--hwy~~egMde~EFtEAes~~ndLi~eyqQ 348 (369)
T KOG1375|consen 286 KMSSTFIGNNTAIQELFRCISEQFTAMFRRKAFL--HWYTGEGMDEMEFTEAESNMNDLVSEYQQ 348 (369)
T ss_pred cccccccccchhHHHHHHHhhhHHHHHHHhhhhh--hhcccccchhhhhhHHHHHHHHHHHHHHH
Confidence 6789999999999999999999995555546 99999999999999999999999999974
No 19
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=8e-42 Score=345.69 Aligned_cols=229 Identities=25% Similarity=0.343 Sum_probs=197.5
Q ss_pred cEEEEecCCchhHHHHHHHHHHHHHcCCCCCCCCCcccccccccccccccccccCCCceeeeeeeeeeccccc-cccccc
Q 011960 3 EIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGS-LGSMSS 81 (474)
Q Consensus 3 EIItlq~Gq~gN~IG~hfWn~q~~~~~~~~~~~~~~~~~~~~~~~~v~Fr~g~t~~g~~~y~PR~llvDl~~~-~~sl~~ 81 (474)
|||+||+|||||+||.+||++. |+||+++. +..+..
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~-------------------------------------------v~idtd~~~l~~~~~ 37 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL-------------------------------------------VLVDTEPGVIDETLS 37 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh-------------------------------------------heecCCHHHHHHHhC
Confidence 8999999999999999999753 88898887 655531
Q ss_pred cccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhcccccccccCCCCCCCCcccccccccccchhcCCCCCC
Q 011960 82 RGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDISLYELGGLWMD 161 (474)
Q Consensus 82 ~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~s~~~l~~~~~~ 161 (474)
.+ .+.+++..+ .+.+..|+|+||++
T Consensus 38 ---------------------------~~------~~~~~~~~~----~~~~~~gag~n~~~------------------ 62 (328)
T cd00286 38 ---------------------------GP------YRLLFCIGQ----LITHGGGAGNNWAF------------------ 62 (328)
T ss_pred ---------------------------cc------cccccCccc----eeecCCCCCCCcce------------------
Confidence 12 223455555 67788899999988
Q ss_pred CCccccccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeeecCCC
Q 011960 162 PQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVRSPS 240 (474)
Q Consensus 162 ~~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v~p~~ 240 (474)
|++..|.+. .|+++|+||+++|+||++|||+++|+++||| ||+|+.++|.|+|||||+++++++++|..
T Consensus 63 ----G~~~~~~~~------~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~~~~~~~v~P~~ 132 (328)
T cd00286 63 ----GHETAGEEY------QEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGP 132 (328)
T ss_pred ----eeccccHHH------HHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCccceeEEEecCCC
Confidence 777777644 8999999999999999999999999999999 99999999999999999999999999986
Q ss_pred ccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcCCCCC
Q 011960 241 SQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEPVG 320 (474)
Q Consensus 241 ~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~~~~g 320 (474)
... +++++||++|++++|.+++|+++|++|++|.+ +|.+.+.++.+.++++|.+||++|+++|.|+|++ |
T Consensus 133 ------~~~-~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~-~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~--g 202 (328)
T cd00286 133 ------DEG-VIVRPYNSILTLHTLTEHSDCLVVIDNEALFD-ICPRPLHIDKPTFDHINELLATALSSLTTPLRFD--G 202 (328)
T ss_pred ------CCc-chhhhhHHHHHHHHHHhcCCeEEEecchhHHH-HhHHhcCCCCCCHHHHHHHHHhhccccccccccC--c
Confidence 222 68999999999999999999999999999988 7877777888999999999999999999999998 5
Q ss_pred CCCCcccccCccChhhHhhccccccccceeeccccCCCC
Q 011960 321 PTADSFDVFGAVDINGFVQMLAGQARQNTVAILDAAMPA 359 (474)
Q Consensus 321 ~~~~~~~~~~~~~l~~~~~~L~~~~r~~~~~~~~~~~p~ 359 (474)
. .+++++++..+|+|+|+.+|+. ....|+
T Consensus 203 ~--------~n~d~~~~~~~l~p~p~~~~~~--~~~~p~ 231 (328)
T cd00286 203 S--------LNVDLRELSENLVPFPRLHFLM--VGYAPL 231 (328)
T ss_pred c--------ccchHHHHhhhcCCCCCceeec--cccCcc
Confidence 4 6789999999999999999843 334444
No 20
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=1.3e-38 Score=303.59 Aligned_cols=212 Identities=25% Similarity=0.450 Sum_probs=181.8
Q ss_pred cEEEEecCCchhHHHHHHHHHHHHHcCCCCCCCCCcccccccccccccccccccCCCceeeeeeeeeeccccc-cccccc
Q 011960 3 EIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGS-LGSMSS 81 (474)
Q Consensus 3 EIItlq~Gq~gN~IG~hfWn~q~~~~~~~~~~~~~~~~~~~~~~~~v~Fr~g~t~~g~~~y~PR~llvDl~~~-~~sl~~ 81 (474)
|||+||+||||||||..||++++.||+++++... . ....+.++||+ +...+ +|+||+|+||+++. +..++.
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~~~--~--~~~~~~~~~f~--~~~~~--~~~~r~i~iDtd~~~l~~i~~ 72 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDSKS--Q--YNRENINSFFS--ESSSG--KYVPRAIAIDTDPKVLDEIRA 72 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTSSS--S--TTSSTGCCTEE--ESTTT--BESEEEEEEESSHHHHHHHHT
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhcccccccc--c--cccccccceee--ecccc--ccccccccccccccccccccc
Confidence 8999999999999999999999999999887221 1 13457789998 55666 89999999999998 766642
Q ss_pred cccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhcccccccccCCCCCCCCcccccccccccchhcCCCCCC
Q 011960 82 RGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSDSQREIQDKDISLYELGGLWMD 161 (474)
Q Consensus 82 ~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~s~~~l~~~~~~ 161 (474)
.+ .+.++.+++ ++.++.++++||++
T Consensus 73 ---------------------------~~------~~~l~~~~~----~~~~~~g~g~n~~~------------------ 97 (216)
T PF00091_consen 73 ---------------------------SP------KRSLFDPNN----LISGQEGSGNNWAV------------------ 97 (216)
T ss_dssp ---------------------------SE------ETTESCGGG----EEETSSTSTTSHHH------------------
T ss_pred ---------------------------cc------ccccccccc----cccccccccccccc------------------
Confidence 22 224667776 88889999999987
Q ss_pred CCccccccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeeecCCC
Q 011960 162 PQEFDNYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVRSPS 240 (474)
Q Consensus 162 ~~~f~~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v~p~~ 240 (474)
|++..|.+. .++++|+||+.+|+||.++||+++|+++||| ||+++.+++.|+++||++++++++++|..
T Consensus 98 ----G~~~~~~~~------~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ilP~~ 167 (216)
T PF00091_consen 98 ----GYYTFGEEA------LEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFSILPFS 167 (216)
T ss_dssp ----HHHHHHHHH------HHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE-CG
T ss_pred ----ccccccccc------ccccccccchhhccccccccceecccccceeccccccccchhhhccccccceeeccccccc
Confidence 666666666 8999999999999999999999999999999 99999999999999999999999999974
Q ss_pred ccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCc
Q 011960 241 SQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKP 296 (474)
Q Consensus 241 ~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~ 296 (474)
. +.++++||++++|+.|.+++|.+++++|++|.+ +|.+.+.++.+.|
T Consensus 168 -------~-e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~-~~~~~l~~~~~~f 214 (216)
T PF00091_consen 168 -------S-EGVVEPYNALLSLSELQEYADSVILFDNDALYK-ICKNQLGIENPAF 214 (216)
T ss_dssp -------G-GSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHH-HHHHTSSHSSHHH
T ss_pred -------c-ccccccceehhHHHHHHHhCCEEEEEcHHHHHH-HHhccCCCCCCCc
Confidence 3 889999999999999999999999999999988 7877777765543
No 21
>PF14881 Tubulin_3: Tubulin domain
Probab=100.00 E-value=1.5e-35 Score=272.47 Aligned_cols=174 Identities=31% Similarity=0.524 Sum_probs=140.4
Q ss_pred cccCCCCCCCCccc-ccccccccchhcCCCCCCCCccccccccccccccCcchhHHHHH-HHHHhhhcCCCCcEEEEEeC
Q 011960 130 MINGTSSGKSDSQR-EIQDKDISLYELGGLWMDPQEFDNYGIGKDAFSEGFRGEEICER-LRFFVEESDHIQGFQFVVDD 207 (474)
Q Consensus 130 ~~~~~~~~~~n~a~-~~~~~~~s~~~l~~~~~~~~~f~~~~~G~~~~~~~~~~d~~~d~-iR~~~EeCD~lqGfq~~~s~ 207 (474)
+.......|+||.| .|+|+++...+-..+++...+|+.|+.|.++|++.+..+++.|+ ||+++||||+|||||++.|+
T Consensus 4 l~~~~vryWSDy~r~~yhPrSl~~l~~~~~~~~~~~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~ 83 (180)
T PF14881_consen 4 LTPSNVRYWSDYNRVHYHPRSLNQLNDYEHNSPNMPFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDV 83 (180)
T ss_pred CCCCCCEECCCCCcceeCCCceEEcCccccCCCCCCcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecC
Confidence 44445567888886 67888873322223345567999999999999997777777765 99999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHhCCcce-eeeeecCCCccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCccccc
Q 011960 208 SGGFSAVAADLLENIADEYANTPV-LLFAVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKAS 286 (474)
Q Consensus 208 ~gG~sG~~s~lle~L~DEY~~~~i-~~~~v~p~~~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~ 286 (474)
++|||||++.+||+|+|||||+++ |+|++.++...... .......+.+|+++++.+|.++|+++|||....
T Consensus 84 d~gwgGfas~~Le~L~DEy~k~~i~~~~~~~~~~~~~~~-~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~------- 155 (180)
T PF14881_consen 84 DDGWGGFASSLLEHLRDEYPKKPIIWVWGLRDPSSSSRD-APRKRRLRLLNKALSLSELSEQSSLFVPLSTLS------- 155 (180)
T ss_pred CCchHhHHHHHHHHHHHHcCCCceEEeecCCCccccccc-hhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC-------
Confidence 999999999999999999999996 88888665432211 122345678999999999999999999999311
Q ss_pred ccCccCCCCcchHHHHHHHHHhhcccCCcC
Q 011960 287 TLLCIENEKPYHCSAVYAAALHSATLPYRM 316 (474)
Q Consensus 287 ~~l~~~~~~~~~~n~liA~~l~t~T~~~R~ 316 (474)
+..+.||+++|+|++|+|+|+|+|+
T Consensus 156 -----d~~s~~htSai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 156 -----DASSNWHTSAILAAAIDTITLPYRL 180 (180)
T ss_pred -----cCCCcHHHHHHHHHHHHhccccCCC
Confidence 3468999999999999999999996
No 22
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=100.00 E-value=3.7e-34 Score=244.85 Aligned_cols=115 Identities=41% Similarity=0.778 Sum_probs=105.6
Q ss_pred ccEEEEecCCchhHHHHHHHHHHHHHcCCCCCCCCCcccccccccccccccccccCCCceeeeeeeeeeccccccccccc
Q 011960 2 REIVTVQVGGFANFIGSHFWNFQDELLGLASDPNNDPVFRNQCLNMDVLYRTGETQQGVLTYTPRLLSVGFQGSLGSMSS 81 (474)
Q Consensus 2 rEIItlq~Gq~gN~IG~hfWn~q~~~~~~~~~~~~~~~~~~~~~~~~v~Fr~g~t~~g~~~y~PR~llvDl~~~~~sl~~ 81 (474)
|||||||+|+++|+|||||||+||+.+.++++... .+++++|+||+|++.+|.++|+||+|+||+|+++|+|++
T Consensus 1 ~EIiTlq~G~~aN~vgtHfwN~Qe~~~~y~~~~~~------~~i~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~lGsL~~ 74 (115)
T PF10644_consen 1 REIITLQLGHYANFVGTHFWNIQESYLPYDPDEKP------SEIDHDVLFREGITLSGTVTYTPRLLLFDLKGGLGSLRK 74 (115)
T ss_pred CcEEEEEcccccCcHHHhhhhhhhcccccCccccC------cccCCceEEecccCcCCCeeECCcEEEEecCCCcCcccc
Confidence 89999999999999999999999999987776542 478999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhh
Q 011960 82 RGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYE 122 (474)
Q Consensus 82 ~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~ 122 (474)
.|.||+.......+..+|+|++++++++|++||+||++|++
T Consensus 75 ~g~ly~~~~~~~~~~~~w~g~~~~~~~~~~~ks~yq~~Ld~ 115 (115)
T PF10644_consen 75 YGYLYEQDDSAPDNQSTWDGKVEVQRQPPIPKSEYQQDLDQ 115 (115)
T ss_pred cccccccCcccccccccCCCceEEEeCCCCCCCHHHHHhcC
Confidence 99999966666677789999999999999999999999974
No 23
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=99.92 E-value=5.2e-26 Score=212.90 Aligned_cols=176 Identities=16% Similarity=0.193 Sum_probs=149.2
Q ss_pred eeeeeeeeeccccc-cccccccccccCCCCCCCCCccccCCceeEEecCCCccchHhHhhhhhcccccccccCCCCCCCC
Q 011960 62 TYTPRLLSVGFQGS-LGSMSSRGLLYNESSPGPSDVVTWSGSVSTHASAPRKKNLFLQRLYEEEQESFSMINGTSSGKSD 140 (474)
Q Consensus 62 ~y~PR~llvDl~~~-~~sl~~~g~ly~~~~~~~~~~~~w~g~v~~~~~~~~~k~~y~~~L~~~~~~~~~~~~~~~~~~~n 140 (474)
+|.||+|++|++++ +..+. ..+ .+.++++.+ .+.++.++||+
T Consensus 9 ~~g~r~v~~d~e~~~i~~i~---------------------------~~t------~~~~l~~~~----~~~~k~~~Gn~ 51 (192)
T smart00864 9 GYGPNAVLVDLEPGVVDEVR---------------------------ANT------DAQALNPES----LASGKIGAGNN 51 (192)
T ss_pred CchhhHHhhhcccCCceEEE---------------------------ECC------HHHHhCCcc----cccchhccccc
Confidence 67899999999997 33321 122 344556655 67788899999
Q ss_pred cccccccccccchhcCCCCCCCCcccccc-----ccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhh
Q 011960 141 SQREIQDKDISLYELGGLWMDPQEFDNYG-----IGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAV 214 (474)
Q Consensus 141 ~a~~~~~~~~s~~~l~~~~~~~~~f~~~~-----~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~ 214 (474)
|++ |+++ .|+++ .|+++|+||+++|+| ++|+++|+++||| ||+
T Consensus 52 ~~~----------------------G~~~~~~~~~g~~~------~~~~~~~ir~~le~~---d~~~i~~slgGGTGsG~ 100 (192)
T smart00864 52 WTR----------------------GLGAGADPEVGREA------AEESLDEIREELEGA---DGVFITAGMGGGTGTGA 100 (192)
T ss_pred ccc----------------------cCCCCCChHHHHHH------HHHHHHHHHHHhcCC---CEEEEeccCCCCccccH
Confidence 998 6665 55555 789999999999999 9999999999999 999
Q ss_pred HHHHHHHHHHHhCCcceeeeeecCCCccccchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCC
Q 011960 215 AADLLENIADEYANTPVLLFAVRSPSSQMNLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENE 294 (474)
Q Consensus 215 ~s~lle~L~DEY~~~~i~~~~v~p~~~~~~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~ 294 (474)
++.+++.++ +||+.. ++++++|. ..+.++++||++++|++|.+++|.+++++|++|.+ .|.+.+.+ .+
T Consensus 101 ~~~i~~~~~-~~~~~~-~~~~v~P~--------~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~-~~~~~~~~-~~ 168 (192)
T smart00864 101 APVIAEIAK-EYGILT-VAVVTKPF--------VFEGVVRPYNAELGLEELREHVDSLIVIDNDALLD-ICGRNLPI-RP 168 (192)
T ss_pred HHHHHHHHH-HcCCcE-EEEEEEeE--------eecchhHHHHHHHHHHHHHHhCCEEEEEEhHHHHH-HHhccCCc-hH
Confidence 999999999 999877 89999983 35678999999999999999999999999999988 67666655 56
Q ss_pred CcchHHHHHHHHHhhcccCCcCC
Q 011960 295 KPYHCSAVYAAALHSATLPYRME 317 (474)
Q Consensus 295 ~~~~~n~liA~~l~t~T~~~R~~ 317 (474)
.|.++|.+||++|.++|.++||+
T Consensus 169 ~~~~~N~~i~~~i~~i~~~~rf~ 191 (192)
T smart00864 169 AFKDANDLLAQAVSGITDLIRFP 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 89999999999999999999997
No 24
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.87 E-value=9.4e-22 Score=199.65 Aligned_cols=151 Identities=16% Similarity=0.196 Sum_probs=130.9
Q ss_pred cccccccccccCcchhHHHHHHHHHhhhcCC--CCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeeecCCCccc
Q 011960 167 NYGIGKDAFSEGFRGEEICERLRFFVEESDH--IQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVRSPSSQM 243 (474)
Q Consensus 167 ~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~--lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v~p~~~~~ 243 (474)
+|..|++. .++..|.||+.+|.||. +|+|+++++++||| +|+++.+++.++++|+ ++++++.++|..
T Consensus 71 ~~~~G~~~------aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~~~-~~~~~iv~~P~~--- 140 (349)
T cd02202 71 DRELGAEV------AEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELKERYE-EPVYALGVLPAR--- 140 (349)
T ss_pred ChHHHHHH------HHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHHHhCC-ccEEEEEEecCC---
Confidence 45567777 78889999999999997 99999999999999 9999999999999999 889999999975
Q ss_pred cchhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcCC---CCC
Q 011960 244 NLRSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRME---PVG 320 (474)
Q Consensus 244 ~~~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~~---~~g 320 (474)
.+.++++||+++++.+|.+++|.+++++|++|.+ ++.+ + .+.|.++|.+||+.|..+|.+.||. ..|
T Consensus 141 -----~eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~-~~~~---~-~~~f~~~N~~Ia~~i~~l~~~~r~~~~~~~g 210 (349)
T cd02202 141 -----EEGERYSANAARSLDALSEEADAIILFDNDAWKR-KGES---V-EEAYDRINEEIARRIGLLLRAGEANAGDSVG 210 (349)
T ss_pred -----CCCchhhHHHHHHHHHHHHhCCEEEEEehHHHhh-hccc---h-HHHHHHHHHHHHHHHHHHHHhhhcccCCCCC
Confidence 2348899999999999999999999999999987 4532 2 2678889999999999999999992 224
Q ss_pred CCCCcccccCccChhhHhhcccccc
Q 011960 321 PTADSFDVFGAVDINGFVQMLAGQA 345 (474)
Q Consensus 321 ~~~~~~~~~~~~~l~~~~~~L~~~~ 345 (474)
. .++|+.++.++|...+
T Consensus 211 ~--------invD~~dv~~~L~~~G 227 (349)
T cd02202 211 E--------SVLDASEVINTLSGGG 227 (349)
T ss_pred e--------EeccHHHHHHHhccCC
Confidence 3 6789999999998653
No 25
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.67 E-value=6.7e-17 Score=161.18 Aligned_cols=145 Identities=19% Similarity=0.153 Sum_probs=124.1
Q ss_pred ccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeeecCCCccccch
Q 011960 168 YGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVRSPSSQMNLR 246 (474)
Q Consensus 168 ~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v~p~~~~~~~~ 246 (474)
|..|++. .++.+|+||+.+|.||. |+++++++||| ||++..+++.++++|+ +++++.|.+
T Consensus 64 ~~~G~~~------a~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~----~~~~vvt~P------ 124 (303)
T cd02191 64 PELGAEA------AEEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT----LTVAVVTLP------ 124 (303)
T ss_pred HHHHHHH------HHHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC----CEEEEEeCC------
Confidence 4457766 78899999999999994 99999999999 9999999999999996 566665543
Q ss_pred hhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcCCCCCCCCCcc
Q 011960 247 SRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSF 326 (474)
Q Consensus 247 ~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~~~~g~~~~~~ 326 (474)
...+..+++||+.+++++|.+++|.+++++|++|.+ +|.+ +.++ +.|.++|.+||+++.++|...|++ |.
T Consensus 125 f~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~-~~~~-~~~~-~af~~~N~~ia~~i~~it~~i~~~--g~----- 194 (303)
T cd02191 125 FSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQ-IGEK-ASLE-GAFDHADEVLVRAVGGLFGAIEIE--GE----- 194 (303)
T ss_pred cccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHH-Hhhc-CChH-HHHHHHHHHHHHHHHHHHHhhccC--Cc-----
Confidence 234667899999999999999999999999999988 6665 6664 478889999999999999999998 54
Q ss_pred cccCccChhhHhhccccc
Q 011960 327 DVFGAVDINGFVQMLAGQ 344 (474)
Q Consensus 327 ~~~~~~~l~~~~~~L~~~ 344 (474)
.++|+.++.+.|..-
T Consensus 195 ---invD~~dv~~~l~~~ 209 (303)
T cd02191 195 ---INVDFADVKNVMDGG 209 (303)
T ss_pred ---ccCCHHHHHHHhccC
Confidence 678999999998653
No 26
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.58 E-value=1.9e-15 Score=153.15 Aligned_cols=148 Identities=20% Similarity=0.221 Sum_probs=121.3
Q ss_pred cccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeeecCCCccccc
Q 011960 167 NYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVRSPSSQMNL 245 (474)
Q Consensus 167 ~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v~p~~~~~~~ 245 (474)
.|..|++. .++.+|.||+.+|.||.+ +++++++||| ||++. ++..+..||+ ++++++.+.+
T Consensus 80 ~~~~G~~~------aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~ap-via~~ake~~---~l~vaivt~P----- 141 (349)
T TIGR00065 80 NPEIGRKA------AEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAP-VVAKIAKELG---ALTVAVVTKP----- 141 (349)
T ss_pred CHHHHHHH------HHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHH-HHHHHHHHcC---CCEEEEEeCC-----
Confidence 45567777 888999999999999995 8999999999 99866 6666777776 4455554332
Q ss_pred hhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcCCCCCCCCCc
Q 011960 246 RSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADS 325 (474)
Q Consensus 246 ~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~~~~g~~~~~ 325 (474)
...+..+++||+.++|.+|.+++|.+++++|++|.+ +|.. +.++. .|..+|.+||+++.++|.++|++ |.
T Consensus 142 -f~~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~-~~~~-~~i~~-af~~~N~iia~~i~~it~~ir~~--g~---- 211 (349)
T TIGR00065 142 -FKFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLE-VVPN-LPLND-AFKVADDVLVRAVKGISELITKP--GL---- 211 (349)
T ss_pred -ccccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHH-hhcC-CCHHH-HHHHHHHHHHHHHHhHHHhhccC--Cc----
Confidence 234668899999999999999999999999999987 6655 65543 78889999999999999999998 54
Q ss_pred ccccCccChhhHhhccccccc
Q 011960 326 FDVFGAVDINGFVQMLAGQAR 346 (474)
Q Consensus 326 ~~~~~~~~l~~~~~~L~~~~r 346 (474)
.++|+.++.+.|...+.
T Consensus 212 ----iNvDf~dv~~vl~~~G~ 228 (349)
T TIGR00065 212 ----INIDFADVRAVMSGGGV 228 (349)
T ss_pred ----CcCCHHHHHHHHhcCCe
Confidence 67899999999976443
No 27
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.54 E-value=8e-15 Score=146.84 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=120.8
Q ss_pred cccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeeecCCCccccc
Q 011960 167 NYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVRSPSSQMNL 245 (474)
Q Consensus 167 ~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v~p~~~~~~~ 245 (474)
+|..|++. .++..|+||+.+|.||.+ +++++++||| ||++..+ ..+..||+. ..+.+.+.|.
T Consensus 63 ~~~~g~~~------a~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~i-a~~a~e~g~-~~~~vvt~Pf------ 125 (304)
T cd02201 63 DPEVGRKA------AEESREEIKEALEGADMV---FITAGMGGGTGTGAAPVI-AKIAKEMGA-LTVAVVTKPF------ 125 (304)
T ss_pred CHHHHHHH------HHHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHH-HHHHHHcCC-CEEEEEeCCc------
Confidence 34456665 788899999999999985 9999999999 9997774 556667874 3333334443
Q ss_pred hhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcCCCCCCCCCc
Q 011960 246 RSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADS 325 (474)
Q Consensus 246 ~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~~~~g~~~~~ 325 (474)
..+..+++||+.+++..|.+++|.+++++|++|.+ +|.+.+.+.. .|..+|.+||+++.++|.++|++ |.
T Consensus 126 --~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~-~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~~~--g~---- 195 (304)
T cd02201 126 --SFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLE-VVDKNLPLLE-AFKLADDVLAQAVKGISDLITKP--GL---- 195 (304)
T ss_pred --cccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHH-hhccCCCHHH-HHHHHHHHHHHHHHHHHHHhccC--cc----
Confidence 34567899999999999999999999999999988 6766566554 67889999999999999999998 54
Q ss_pred ccccCccChhhHhhcccccccc
Q 011960 326 FDVFGAVDINGFVQMLAGQARQ 347 (474)
Q Consensus 326 ~~~~~~~~l~~~~~~L~~~~r~ 347 (474)
.++|+.++.+.|...+..
T Consensus 196 ----invD~~dv~~vl~~~G~a 213 (304)
T cd02201 196 ----INLDFADVKTVMKNKGVA 213 (304)
T ss_pred ----ccCCHHHHHHHhccCCeE
Confidence 678999999999765443
No 28
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.45 E-value=1.5e-13 Score=139.96 Aligned_cols=146 Identities=14% Similarity=0.115 Sum_probs=122.0
Q ss_pred cccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeeecCCCccccc
Q 011960 167 NYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVRSPSSQMNL 245 (474)
Q Consensus 167 ~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v~p~~~~~~~ 245 (474)
.+..|++. .++..|.||+.+|.||. |+++++++||| ||++..+++.+++ |+ ...+.+.+.|..
T Consensus 91 dp~~G~~a------aee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake-~g-~ltv~vVt~Pf~----- 154 (378)
T PRK13018 91 DPEVGRKA------AEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKE-QG-ALVVGVVTKPFK----- 154 (378)
T ss_pred ChHHHHHH------HHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHH-cC-CCeEEEEEcCcc-----
Confidence 34557776 78889999999999998 99999999999 9999988888886 54 344555567764
Q ss_pred hhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcCCCCCCCCCc
Q 011960 246 RSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADS 325 (474)
Q Consensus 246 ~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~~~~g~~~~~ 325 (474)
.+...+..|+.++|.+|.+++|.+++++|++|.+ +| +.+.++ ..|..+|.+||+++.++|.++|++ |.
T Consensus 155 ---~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~-i~-~~~~i~-~af~~~N~iIa~~I~~It~~i~~~--G~---- 222 (378)
T PRK13018 155 ---FEGRARMQKAEEGIERLREAADTVIVIDNNRLLD-IV-PNLPIA-DAFSVADEVIAETVKGITETITKP--SL---- 222 (378)
T ss_pred ---cccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHH-HH-hcCCHH-HHHHHHHHHHHHHHHhhhhhcccC--Cc----
Confidence 3456788999999999999999999999999987 67 666655 368889999999999999999998 54
Q ss_pred ccccCccChhhHhhccccc
Q 011960 326 FDVFGAVDINGFVQMLAGQ 344 (474)
Q Consensus 326 ~~~~~~~~l~~~~~~L~~~ 344 (474)
.++|+.++.+.|...
T Consensus 223 ----iN~Df~dv~~vl~~~ 237 (378)
T PRK13018 223 ----INLDFADVKSVMKGG 237 (378)
T ss_pred ----eecCHHHHHHHhccC
Confidence 678999999988754
No 29
>PRK09330 cell division protein FtsZ; Validated
Probab=99.28 E-value=3.9e-12 Score=129.79 Aligned_cols=149 Identities=18% Similarity=0.145 Sum_probs=122.8
Q ss_pred cccccccccccCcchhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeeecCCCccccc
Q 011960 167 NYGIGKDAFSEGFRGEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVRSPSSQMNL 245 (474)
Q Consensus 167 ~~~~G~~~~~~~~~~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v~p~~~~~~~ 245 (474)
.+..|++. .++..|.||+.+|.||.+ +|++.++||| +|.+. ++..+..||+ +++++|.+.+
T Consensus 76 ~pe~G~~a------aee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaap-vIA~iake~g---~ltvaVvt~P----- 137 (384)
T PRK09330 76 NPEVGRKA------AEESREEIREALEGADMV---FITAGMGGGTGTGAAP-VVAEIAKELG---ILTVAVVTKP----- 137 (384)
T ss_pred CHHHHHHH------HHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHH-HHHHHHHHcC---CcEEEEEecC-----
Confidence 45568777 788899999999999998 8999999999 99888 8888999997 6677775543
Q ss_pred hhhhhhHHHHHHHHHHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcCCCCCCCCCc
Q 011960 246 RSRKQTIFRELHDTVSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADS 325 (474)
Q Consensus 246 ~~~~~~~~~~yN~~Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~~~~g~~~~~ 325 (474)
-..+..+++||+..+|..|.+++|.+|+++|+.|.+ ++.+.+.+.. .|...|.+|+.++.++|..+|++ |.
T Consensus 138 -F~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~-~~~~~~~l~~-Af~~ad~vL~~~v~~It~~i~~p--G~---- 208 (384)
T PRK09330 138 -FSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLE-VVDKKTPLLD-AFKAADDVLRQAVQGITDLITKP--GL---- 208 (384)
T ss_pred -ccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHh-hccCCCCHHH-HHHHHHHHHHHHHHHHHHHHhcC--Cc----
Confidence 245677899999999999999999999999999987 5655454442 67788999999999999999987 54
Q ss_pred ccccCccChhhHhhccccccc
Q 011960 326 FDVFGAVDINGFVQMLAGQAR 346 (474)
Q Consensus 326 ~~~~~~~~l~~~~~~L~~~~r 346 (474)
.++|..++-+.|...+.
T Consensus 209 ----iNvDfaDvk~vm~~~G~ 225 (384)
T PRK09330 209 ----INLDFADVKTVMSEMGL 225 (384)
T ss_pred ----ccCCHHHHHHHHhcCCe
Confidence 67888888888865433
No 30
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=95.05 E-value=0.069 Score=54.07 Aligned_cols=141 Identities=17% Similarity=0.084 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHHhCCcceeeeeecCCCccccchhhhhhHHHHHHHH
Q 011960 181 GEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADEYANTPVLLFAVRSPSSQMNLRSRKQTIFRELHDT 259 (474)
Q Consensus 181 ~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DEY~~~~i~~~~v~p~~~~~~~~~~~~~~~~~yN~~ 259 (474)
.++..+.|+..++..| =+.++..++||| +|.+-.+.+ +..|| +.......+.|.. .+-..+.-|+.
T Consensus 82 Aee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvak-iake~-g~ltvavvt~Pf~--------~EG~~r~~~A~ 148 (338)
T COG0206 82 AEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAE-IAKEL-GALTVAVVTLPFS--------FEGSPRMENAE 148 (338)
T ss_pred HHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHH-HHHhc-CCcEEEEEEecch--------hcCchHHHHHH
Confidence 6677777888877777 567778899999 665554445 44454 4455555567754 23345667899
Q ss_pred HHHhhhcccccEEEEecCCCCCcccccccCccCCCCcchHHHHHHHHHhhcccCCcCCCCCCCCCcccccCccChhhHhh
Q 011960 260 VSFSRLASFGKLIVPVGLPFLNESKASTLLCIENEKPYHCSAVYAAALHSATLPYRMEPVGPTADSFDVFGAVDINGFVQ 339 (474)
Q Consensus 260 Lsl~~l~~~sd~~~pl~n~~l~~~~~~~~l~~~~~~~~~~n~liA~~l~t~T~~~R~~~~g~~~~~~~~~~~~~l~~~~~ 339 (474)
-.+..|.+++|-+|.++|+.|.. ... ...+ ..-+-..+.+++..+..++-..-.+ |. -++|..++-+
T Consensus 149 ~gi~~L~~~~DtlIvi~Ndkll~-~~~-~~~~-~~Af~~ad~vl~~~v~~i~e~I~~~--gl--------invDfaDv~~ 215 (338)
T COG0206 149 EGIEELREVVDTLIVIPNDKLLK-GKD-KTPI-AEAFNEADDVLGNAVKGITELITKP--GL--------VNVDFADVRT 215 (338)
T ss_pred HHHHHHHHhCCcEEEEecHHHHh-ccC-cccH-HHHHHHHHHHHHHHHHHHHHHhccC--ce--------EeecHHHHHH
Confidence 99999999999999999998755 211 1000 0123345677777777766554333 33 5678888888
Q ss_pred cccccccc
Q 011960 340 MLAGQARQ 347 (474)
Q Consensus 340 ~L~~~~r~ 347 (474)
.|...+..
T Consensus 216 vm~~~G~A 223 (338)
T COG0206 216 VMKGGGFA 223 (338)
T ss_pred HHhcCCce
Confidence 88775554
No 31
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=94.45 E-value=0.15 Score=44.13 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=27.9
Q ss_pred CcccCCCCCc-cceeccCc---------eeeeecchhhHHHHHHHHH
Q 011960 386 PFVGSSPRGS-LEVHSIPM---------AVRLRSSSAILPFLENRLG 422 (474)
Q Consensus 386 ~~~~~~~~~~-~~~~sip~---------~~~L~n~t~i~~~~~~~~~ 422 (474)
.|+.|.|.+. .++|.+|+ +++|+|+|+|+++|+++.+
T Consensus 80 ~Fv~W~p~~~kv~~~~~~p~~~~~s~~s~~~LsNsTaI~~~f~~i~~ 126 (126)
T PF03953_consen 80 QFVDWIPTGFKVGICKVPPYGQPNSDRSGLMLSNSTAIAEVFSRISH 126 (126)
T ss_dssp SB-SSSTTCEEEEEESS-STSTTTSSEEEEEEEEEGGGHHHHHHHHH
T ss_pred ceeeecCchhhcccccCCCcccCCCcceEEEeCChHHHHHHHHHhcC
Confidence 4667777766 78888873 4689999999999999864
No 32
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=80.33 E-value=6.3 Score=33.55 Aligned_cols=37 Identities=27% Similarity=0.299 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHH
Q 011960 181 GEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAAD 217 (474)
Q Consensus 181 ~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~ 217 (474)
.+++.+++++.+++.+.=+|+.+++|+-||+ .=.++.
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n~a~~ 78 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSPYNAAAR 78 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHH
Confidence 6789999999999988889999999999999 555443
No 33
>PF13809 Tubulin_2: Tubulin like
Probab=78.80 E-value=14 Score=37.71 Aligned_cols=39 Identities=23% Similarity=0.163 Sum_probs=33.1
Q ss_pred EEEEEeCCCCc-hhhHHHHHHHHHHHh-----CCcceeeeeecCC
Q 011960 201 FQFVVDDSGGF-SAVAADLLENIADEY-----ANTPVLLFAVRSP 239 (474)
Q Consensus 201 fq~~~s~~gG~-sG~~s~lle~L~DEY-----~~~~i~~~~v~p~ 239 (474)
+.|+.|++||| ||+---++-.||+.+ ....+..|.+.|.
T Consensus 150 V~Vv~SlaGGTGSG~~lDia~~lr~~~~~~~~~~~~i~~~~~lP~ 194 (345)
T PF13809_consen 150 VFVVGSLAGGTGSGMFLDIAYLLRDILKQPGQDNPRIYGFFVLPD 194 (345)
T ss_pred EEEEEecCCccchhHHHHHHHHHHHHhhcccCCCceEEEEEECCc
Confidence 67789999999 999999999999987 3445778888886
No 34
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=77.07 E-value=7.9 Score=33.09 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHH
Q 011960 181 GEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAA 216 (474)
Q Consensus 181 ~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s 216 (474)
.+++.+++++.+++.+.-+|+.+++|+-||+ .-.+.
T Consensus 40 ~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp~n~~~ 76 (122)
T cd00006 40 PDDLLEKIKAALAELDSGEGVLILTDLFGGSPNNAAA 76 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCHHHHHH
Confidence 6788999999999998889999999999998 44333
No 35
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=76.77 E-value=5.4 Score=33.74 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhh
Q 011960 181 GEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAV 214 (474)
Q Consensus 181 ~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~ 214 (474)
.+++.+++++.+++-+.-+|+.+++|+.||+ ...
T Consensus 40 ~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp~n~ 74 (116)
T PF03610_consen 40 IEDFEEKLEEAIEELDEGDGVLILTDLGGGSPFNE 74 (116)
T ss_dssp HHHHHHHHHHHHHHCCTTSEEEEEESSTTSHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEeeCCCCccchH
Confidence 6889999999999999999999999999998 443
No 36
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=73.32 E-value=4.5 Score=35.04 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHHHH
Q 011960 181 GEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIADE 225 (474)
Q Consensus 181 ~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~DE 225 (474)
.+...++|+..++++|. .|+.+++|+ ||+ .- ....+|.+.++
T Consensus 41 ~gt~~~~i~~ai~~~~~-dGVlVltDL-Gssp~n-~~~a~e~~~~~ 83 (124)
T PRK14484 41 IGTSFDQIQEAIEKNES-DGVLIFFDL-GSAEMN-AEMAIEMLDGE 83 (124)
T ss_pred ccchHHHHHHHHHhcCc-CCeEEEEeC-CChHHH-HHHHHHhcCCC
Confidence 56788999999999999 999999999 887 32 34456666545
No 37
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=55.57 E-value=31 Score=34.96 Aligned_cols=39 Identities=26% Similarity=0.397 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHH
Q 011960 181 GEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLL 219 (474)
Q Consensus 181 ~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~ll 219 (474)
.+++.++++..+++.+.=.|+.+++|+-||+ .-.+..++
T Consensus 42 ~~~~~~~l~~~i~~~~~~d~vlILtDl~GGSP~N~a~~~~ 81 (322)
T PRK15088 42 AETLIEKYNAQLAKLDTSKGVLFLVDTWGGSPFNAASRIV 81 (322)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 6889999999999998889999999999999 55444333
No 38
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=43.98 E-value=11 Score=30.92 Aligned_cols=54 Identities=9% Similarity=0.103 Sum_probs=37.6
Q ss_pred eecchhhHHHHHH-------HHHHHhchhhhccccccceeeccCCChhhHHHHHHHHHHHHhcccC
Q 011960 407 LRSSSAILPFLEN-------RLGNLRRYGLQRGALGAELLRNWGFADDELYDMGEMLSKMVSTMKP 465 (474)
Q Consensus 407 L~n~t~i~~~~~~-------~~~~f~~l~~rr~~~~~~~y~~~G~~~~ef~E~~e~l~~l~~~Y~~ 465 (474)
+.|+++|..+|.. +++....++-+|. +|.+--=-...+.||+..|..|.+++.+
T Consensus 28 IanDsaVqsLF~~lt~mH~~LL~~i~~~ee~R~-----~~E~lQdkL~qi~eAR~AlDalR~eH~~ 88 (96)
T PF12210_consen 28 IANDSAVQSLFQTLTAMHPQLLKYIQEQEEKRV-----YYEGLQDKLAQIKEARAALDALREEHRE 88 (96)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999998875 4566677766665 3332212357899999999999988863
No 39
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=40.99 E-value=29 Score=30.07 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHhhhcCC-CCcEEEEEeCCCCc
Q 011960 181 GEEICERLRFFVEESDH-IQGFQFVVDDSGGF 211 (474)
Q Consensus 181 ~d~~~d~iR~~~EeCD~-lqGfq~~~s~~gG~ 211 (474)
.+.+.++|++.+|+++. =+|+.+++|+ ||+
T Consensus 41 ~gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs 71 (125)
T TIGR02364 41 LGTSPDKIIEAIEKADNEADGVLIFYDL-GSA 71 (125)
T ss_pred ccchHHHHHHHHHHhcCCCCCEEEEEcC-CCc
Confidence 56788889999999966 8999999999 775
No 40
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=38.16 E-value=33 Score=29.81 Aligned_cols=25 Identities=8% Similarity=0.377 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHhCC-cceeeeee
Q 011960 212 SAVAADLLENIADEYAN-TPVLLFAV 236 (474)
Q Consensus 212 sG~~s~lle~L~DEY~~-~~i~~~~v 236 (474)
+|+|..+++.||.++|. ..++..+.
T Consensus 10 GGiG~~iv~~lr~~~~~~~eI~AlGT 35 (131)
T PF12953_consen 10 GGIGKQIVEKLRKELPEEVEIIALGT 35 (131)
T ss_pred ChhHHHHHHHHHHhCCCCcEEEEEeh
Confidence 89999999999999998 66666664
No 41
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=31.65 E-value=1.2e+02 Score=26.99 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHH
Q 011960 181 GEEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLE 220 (474)
Q Consensus 181 ~d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle 220 (474)
.+.+.+.+...++.=|.=.|+.+++|+-||+ .-.+++++.
T Consensus 42 ~~~l~~~~~~~~~~~d~~eevl~ltDl~GGSP~N~A~~l~~ 82 (143)
T COG2893 42 EDLLTKQIAAAIAALDSGEGVLFLTDLFGGSPFNVASRLAM 82 (143)
T ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEecCCCCHhHHHHHHHh
Confidence 3445555666666667779999999999999 666665554
No 42
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=28.60 E-value=1.4e+02 Score=24.80 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=42.6
Q ss_pred hHHHHHHHHHhhhcCCCCcEEEEEeCCCCchhh-----H---HHHHHHHHHHhCCcceeeee
Q 011960 182 EEICERLRFFVEESDHIQGFQFVVDDSGGFSAV-----A---ADLLENIADEYANTPVLLFA 235 (474)
Q Consensus 182 d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~sG~-----~---s~lle~L~DEY~~~~i~~~~ 235 (474)
-.+-+.++.+++..+-..|-.++.+.++.+.++ + -..++.|...||++..+.++
T Consensus 10 wnly~~l~~Fl~~~~~P~G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~fP~~kfiLIG 71 (100)
T PF09949_consen 10 WNLYPFLRDFLRRNGFPAGPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDFPERKFILIG 71 (100)
T ss_pred HHHHHHHHHHHHhcCCCCCceEcccCCccccccccCCchhHHHHHHHHHHHHCCCCcEEEEe
Confidence 456788999999999999999999986543222 2 34678999999998888777
No 43
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=27.05 E-value=2.9e+02 Score=28.08 Aligned_cols=89 Identities=10% Similarity=0.017 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhhhcCCCCcEEEEEeCCCCchhhHHHHHHHHHHHhCCcceeeeeecCCCccccchhhhhhHHHHHHHHHH
Q 011960 182 EEICERLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEYANTPVLLFAVRSPSSQMNLRSRKQTIFRELHDTVS 261 (474)
Q Consensus 182 d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~sG~~s~lle~L~DEY~~~~i~~~~v~p~~~~~~~~~~~~~~~~~yN~~Ls 261 (474)
+++.+-.+...|.++..+||.|+|-.+ |=-.++.+|..+-...+|--++|=+.+|... ...|...+.++++ .
T Consensus 66 ~~w~~la~~I~~~~~~~dG~VVtHGTD--TmeeTA~~L~~~l~~~~kPVVlTGAmrP~~~-----~~sDg~~NL~~Av-~ 137 (335)
T PRK09461 66 EDWQHIADDIKANYDDYDGFVILHGTD--TMAYTASALSFMLENLGKPVIVTGSQIPLAE-----LRSDGQTNLLNAL-Y 137 (335)
T ss_pred HHHHHHHHHHHHHhccCCeEEEeeccc--hHHHHHHHHHHHHhCCCCCEEEeCCCCCCCC-----CCchHHHHHHHHH-H
Confidence 334443344444557789999999654 4444666676655443443444445577642 2344555444444 3
Q ss_pred HhhhcccccEEEEecCC
Q 011960 262 FSRLASFGKLIVPVGLP 278 (474)
Q Consensus 262 l~~l~~~sd~~~pl~n~ 278 (474)
+..-...+..++.|+..
T Consensus 138 ~A~~~~~~GV~V~f~~~ 154 (335)
T PRK09461 138 VAANYPINEVTLFFNNK 154 (335)
T ss_pred HHcCCCCCeEEEEECCE
Confidence 43322234577777764
No 44
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=26.94 E-value=2.8e+02 Score=23.90 Aligned_cols=71 Identities=18% Similarity=0.262 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhhhcCCCCcEEEEEeCCCCc-hhhHHHHHHHHH----HHhCCcceeeeeecCCCccccchhhhhhHHHHH
Q 011960 182 EEICERLRFFVEESDHIQGFQFVVDDSGGF-SAVAADLLENIA----DEYANTPVLLFAVRSPSSQMNLRSRKQTIFREL 256 (474)
Q Consensus 182 d~~~d~iR~~~EeCD~lqGfq~~~s~~gG~-sG~~s~lle~L~----DEY~~~~i~~~~v~p~~~~~~~~~~~~~~~~~y 256 (474)
++-.+.+...+.+|| |+.+.....-|. +|.--.+++++. ..+.+|++..+++-... .....+...+
T Consensus 58 ~d~~~~~~~~l~~aD---~iI~~sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~g~~------~g~~~~~~~l 128 (152)
T PF03358_consen 58 PDDVQELYDKLKEAD---GIIFASPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVGGGR------RGGLRALEQL 128 (152)
T ss_dssp SHHHHHHHHHHHHSS---EEEEEEEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEESSS------STTHHHHHHH
T ss_pred cHHHHHHHhceecCC---eEEEeecEEcCcCChhhhHHHHHhccccccccCCCEEEEEEEecCC------cHHHHHHHHH
Confidence 344456667777887 778888887665 999999999994 66778888877775432 1234445555
Q ss_pred HHHHH
Q 011960 257 HDTVS 261 (474)
Q Consensus 257 N~~Ls 261 (474)
..++.
T Consensus 129 ~~~~~ 133 (152)
T PF03358_consen 129 RQILD 133 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 45
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=26.52 E-value=94 Score=30.67 Aligned_cols=41 Identities=29% Similarity=0.325 Sum_probs=25.5
Q ss_pred hhHHHH-HHHHHhhhcCCCCcEEEEEeCCCCchhhHHHHHHHHHHHh
Q 011960 181 GEEICE-RLRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEY 226 (474)
Q Consensus 181 ~d~~~d-~iR~~~EeCD~lqGfq~~~s~~gG~sG~~s~lle~L~DEY 226 (474)
.|+.+. .+...+|+++-=.|= =+.|++.||||++-. +...|
T Consensus 43 Le~AQ~~k~~~~~~~~~l~~G~-~vLDiGcGwG~~~~~----~a~~~ 84 (273)
T PF02353_consen 43 LEEAQERKLDLLCEKLGLKPGD-RVLDIGCGWGGLAIY----AAERY 84 (273)
T ss_dssp HHHHHHHHHHHHHTTTT--TT--EEEEES-TTSHHHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCC-EEEEeCCCccHHHHH----HHHHc
Confidence 455554 488888888755565 556999999887554 45556
No 46
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=25.60 E-value=83 Score=23.89 Aligned_cols=24 Identities=17% Similarity=0.463 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHhCCcceeeee
Q 011960 212 SAVAADLLENIADEYANTPVLLFA 235 (474)
Q Consensus 212 sG~~s~lle~L~DEY~~~~i~~~~ 235 (474)
-|+|+.|+..+.++++++.+++.+
T Consensus 41 ~Gig~~ll~~~~~~~~~~~i~l~~ 64 (79)
T PF13508_consen 41 KGIGSKLLNYLLEKAKSKKIFLFT 64 (79)
T ss_dssp SSHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEE
Confidence 689999999999999988876554
No 47
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=24.42 E-value=1.2e+02 Score=30.18 Aligned_cols=44 Identities=14% Similarity=0.202 Sum_probs=33.3
Q ss_pred HHHHhhhcCCCCcEEEEEeCCCCchhhHHHHHHHHHHHhCCcceeeeee
Q 011960 188 LRFFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEYANTPVLLFAV 236 (474)
Q Consensus 188 iR~~~EeCD~lqGfq~~~s~~gG~sG~~s~lle~L~DEY~~~~i~~~~v 236 (474)
|-+.+++. |+.++..-+.=++|+|+.+.|.|.+++| +++--.++
T Consensus 237 i~~~A~~t----~~IvT~EeHsi~GGlGsaVAEvlse~~p-~~~~riGv 280 (312)
T COG3958 237 ILKAARET----GRIVTAEEHSIIGGLGSAVAEVLSENGP-TPMRRIGV 280 (312)
T ss_pred HHHHHhhc----CcEEEEecceeecchhHHHHHHHHhcCC-cceEEecC
Confidence 44555555 7888866665668889999999999999 66666666
No 48
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=21.95 E-value=66 Score=25.01 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhcCCCCcEEEEE
Q 011960 183 EICERLRFFVEESDHIQGFQFVV 205 (474)
Q Consensus 183 ~~~d~iR~~~EeCD~lqGfq~~~ 205 (474)
.+.|.+|+.++.|-+.+=|++.-
T Consensus 2 ~id~~v~~~~~~C~C~~~f~i~r 24 (73)
T smart00243 2 KIDDEVKRIVEDCKCPTKFQVEK 24 (73)
T ss_pred cHHHHHHHHHhcCCCCCCcceEE
Confidence 46788999999999988887763
No 49
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.96 E-value=4e+02 Score=22.88 Aligned_cols=40 Identities=5% Similarity=0.232 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCcceeeeeecCCCccccchhhhhhHHHHHHHHHH
Q 011960 217 DLLENIADEYANTPVLLFAVRSPSSQMNLRSRKQTIFRELHDTVS 261 (474)
Q Consensus 217 ~lle~L~DEY~~~~i~~~~v~p~~~~~~~~~~~~~~~~~yN~~Ls 261 (474)
.+++.+++-+|+..++..++.|... .......+.||.++.
T Consensus 68 ~~i~~i~~~~p~~~ii~~~~~p~~~-----~~~~~~~~~~n~~l~ 107 (157)
T cd01833 68 ALIDQMRAANPDVKIIVATLIPTTD-----ASGNARIAEYNAAIP 107 (157)
T ss_pred HHHHHHHHhCCCeEEEEEeCCCCCC-----cchhHHHHHHHHHHH
Confidence 4567788888988888776655431 112344567777654
No 50
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=20.82 E-value=1.1e+02 Score=31.23 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=31.6
Q ss_pred HHhhhcCCCCcEEEEEeCCCCchhhHHHHHHHHHHHhCCcceeeeee
Q 011960 190 FFVEESDHIQGFQFVVDDSGGFSAVAADLLENIADEYANTPVLLFAV 236 (474)
Q Consensus 190 ~~~EeCD~lqGfq~~~s~~gG~sG~~s~lle~L~DEY~~~~i~~~~v 236 (474)
+.++.+..+.||.+..|++||. |.-+=..+. +||+.-.+.|-+
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGi---G~v~k~ll~-~fp~ik~infdl 209 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGI---GRVLKNLLS-KYPHIKGINFDL 209 (342)
T ss_pred hhhhhhcccccCceEEEcCCcH---hHHHHHHHH-hCCCCceeecCH
Confidence 4577888888999999999887 444444455 999876665543
Done!