BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 011961
         (474 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P53589|SUCB2_CAEEL Probable succinyl-CoA ligase [GDP-forming] subunit beta,
           mitochondrial OS=Caenorhabditis elegans GN=C50F7.4 PE=3
           SV=1
          Length = 415

 Score = 33.5 bits (75), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 9/119 (7%)

Query: 238 ELYKKHHPPMLEDEVWRLEKIGKDGAFHKKLSAAGIK-TVQDFLKLSIVEPQRLRKILGP 296
           E +++H P  ++   + L  IG DG     ++ AG+     D +KL   EP     + G 
Sbjct: 261 ETFEEHDPREVDAHQFNLNYIGMDGNIACLVNGAGLAMATMDLIKLHGGEPANFLDVGGA 320

Query: 297 GMSEKMWE----VTMQHARKCVMGNKLYIFRG-HNCIILLNPICQVVRAVINNQTYLTR 350
              + ++     +T     KCV+ N   IF G  NC  + N +   V  +  N   + R
Sbjct: 321 VTEDAVFNAVRIITSDPRVKCVLIN---IFGGIVNCATIANGVVSAVNKIGLNVPMVVR 376


>sp|A3Q9C4|CAPP_SHELP Phosphoenolpyruvate carboxylase OS=Shewanella loihica (strain ATCC
           BAA-1088 / PV-4) GN=ppc PE=3 SV=1
          Length = 878

 Score = 32.7 bits (73), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 149 GDRDHWTPEEFESNIVKERTGKRPLL 174
           GD DHW   E ++ +++E +GKRPL+
Sbjct: 415 GDFDHWDEHEKQAFLLRELSGKRPLI 440


>sp|A8G1A9|CAPP_SHESH Phosphoenolpyruvate carboxylase OS=Shewanella sediminis (strain
           HAW-EB3) GN=ppc PE=3 SV=1
          Length = 878

 Score = 32.7 bits (73), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 149 GDRDHWTPEEFESNIVKERTGKRPLLTGDVNVTARDGVAPI 189
           GD +HW   E ++ +++E TGKRPL+    N    D VA +
Sbjct: 415 GDYNHWDESEKQAFLLRELTGKRPLIPS--NWQPSDDVAEV 453


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.134    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,438,644
Number of Sequences: 539616
Number of extensions: 7554696
Number of successful extensions: 18869
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 18867
Number of HSP's gapped (non-prelim): 7
length of query: 474
length of database: 191,569,459
effective HSP length: 121
effective length of query: 353
effective length of database: 126,275,923
effective search space: 44575400819
effective search space used: 44575400819
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)