Query 011961
Match_columns 474
No_of_seqs 128 out of 151
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 18:50:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011961.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011961hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wcn_A Transcription elongatio 92.9 0.027 9.1E-07 44.9 0.9 62 248-316 5-67 (70)
2 2kz3_A Putative uncharacterize 88.5 0.39 1.4E-05 39.6 4.0 41 264-309 16-56 (83)
3 2i1q_A DNA repair and recombin 81.4 0.56 1.9E-05 45.0 2.0 59 250-315 3-61 (322)
4 3lda_A DNA repair protein RAD5 78.2 1.5 5.1E-05 44.7 4.0 62 250-316 81-142 (400)
5 1b22_A DNA repair protein RAD5 71.2 0.96 3.3E-05 39.2 0.4 61 251-316 24-84 (114)
6 2z43_A DNA repair and recombin 67.7 1.1 3.8E-05 43.5 0.0 57 251-314 13-69 (324)
7 1pzn_A RAD51, DNA repair and r 66.2 5 0.00017 39.6 4.4 58 251-315 36-93 (349)
8 1v5w_A DMC1, meiotic recombina 65.5 1.4 4.8E-05 43.3 0.3 59 251-314 26-84 (343)
9 3pzp_A DNA polymerase kappa; D 63.8 4.2 0.00014 42.9 3.5 51 252-312 340-390 (517)
10 3osn_A DNA polymerase IOTA; ho 60.6 4.8 0.00016 41.2 3.2 54 252-314 236-289 (420)
11 4dez_A POL IV 1, DNA polymeras 59.2 5.2 0.00018 39.5 3.0 52 252-312 180-231 (356)
12 1t94_A Polymerase (DNA directe 57.9 6 0.00021 40.7 3.3 50 252-311 284-333 (459)
13 2aq4_A DNA repair protein REV1 54.7 9.2 0.00032 39.1 4.1 53 252-312 243-297 (434)
14 3mab_A Uncharacterized protein 50.6 5.5 0.00019 33.4 1.3 73 255-363 9-81 (93)
15 1jx4_A DNA polymerase IV (fami 49.2 6.1 0.00021 38.9 1.7 55 252-315 180-234 (352)
16 3bq0_A POL IV, DBH, DNA polyme 46.8 7.3 0.00025 38.4 1.8 55 252-315 181-235 (354)
17 3im1_A Protein SNU246, PRE-mRN 46.4 14 0.00048 36.1 3.8 55 251-312 158-212 (328)
18 4f4y_A POL IV, DNA polymerase 44.9 7.7 0.00026 38.8 1.7 52 252-312 181-232 (362)
19 2q0z_X Protein Pro2281; SEC63, 35.8 32 0.0011 33.8 4.5 55 251-312 162-216 (339)
20 1z3e_B DNA-directed RNA polyme 35.4 22 0.00074 28.5 2.6 37 266-307 22-58 (73)
21 3gqc_A DNA repair protein REV1 35.3 21 0.00072 37.7 3.2 52 252-312 317-368 (504)
22 3k4g_A DNA-directed RNA polyme 33.9 28 0.00095 28.9 3.1 38 266-308 25-62 (86)
23 1u9l_A Transcription elongatio 24.8 42 0.0014 26.5 2.5 50 261-315 15-64 (70)
24 3gfk_B DNA-directed RNA polyme 23.9 26 0.0009 28.6 1.2 37 266-307 29-65 (79)
25 2va8_A SSO2462, SKI2-type heli 23.2 52 0.0018 34.9 3.6 48 254-311 661-708 (715)
26 3bqs_A Uncharacterized protein 21.1 48 0.0016 27.6 2.3 73 255-363 9-81 (93)
27 4ecq_A DNA polymerase ETA; tra 20.9 28 0.00097 35.6 1.0 54 252-314 255-309 (435)
No 1
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=92.93 E-value=0.027 Score=44.93 Aligned_cols=62 Identities=27% Similarity=0.426 Sum_probs=51.1
Q ss_pred CCcceeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhh-ccCC
Q 011961 248 LEDEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARK-CVMG 316 (474)
Q Consensus 248 L~DeVwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt-Cvl~ 316 (474)
+.|++-.|++|+..- -++|.++||+||+|+..+ +++.|..|. |+|...=+.++.-|+. |-+.
T Consensus 5 ~~~~l~~L~Gi~~~~--~~kL~e~Gi~TvedlA~~---~~~eL~~i~--gise~kA~~ii~aAr~~~w~~ 67 (70)
T 1wcn_A 5 PADDLLNLEGVDRDL--AFKLAARGVCTLEDLAEQ---GIDDLADIE--GLTDEKAGALIMAARNICWFG 67 (70)
T ss_dssp CCHHHHSSTTCCHHH--HHHHHTTTCCSHHHHHTS---CHHHHHTSS--SCCHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHcCCCCHHH--HHHHHHcCCCcHHHHHcC---CHHHHHHcc--CCCHHHHHHHHHHHHHccCcc
Confidence 567788888777664 489999999999987654 778899987 7899999999999998 7553
No 2
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=88.50 E-value=0.39 Score=39.59 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=31.2
Q ss_pred hhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHH
Q 011961 264 FHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQH 309 (474)
Q Consensus 264 ~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~H 309 (474)
.-++|.+++|.||+||+. .|+.+|.+++| +|-+.=-.+..|
T Consensus 16 ~~~~L~~~~I~Tv~Dfl~---~d~~eL~~~~~--ls~~~v~~l~r~ 56 (83)
T 2kz3_A 16 MIQLLRSHRIKTVVDLVS---ADLEEVAQKCG--LSYKALVALRRV 56 (83)
T ss_dssp HHHHHHHTTCCCHHHHTT---SCHHHHHHHHT--CCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHh---CCHHHHHHHhC--CCHHHHHHHHHH
Confidence 348899999999999975 69999999994 565554444443
No 3
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=81.42 E-value=0.56 Score=45.01 Aligned_cols=59 Identities=25% Similarity=0.240 Sum_probs=44.4
Q ss_pred cceeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhhccC
Q 011961 250 DEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVM 315 (474)
Q Consensus 250 DeVwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl 315 (474)
+++..|++|+.. .-++|.++||+||+||+.+ ++..|-++. |+|.+.=+.+++.|+.+..
T Consensus 3 ~~~~~l~gi~~~--~~~kL~~~gi~t~~~~~~~---~~~~L~~~~--gis~~~a~~~i~~a~~~~~ 61 (322)
T 2i1q_A 3 DNLTDLPGVGPS--TAEKLVEAGYIDFMKIATA---TVGELTDIE--GISEKAAAKMIMGARDLCD 61 (322)
T ss_dssp --CTTSTTCCHH--HHHHHHHHTCCSHHHHHTC---CHHHHHTST--TCCHHHHHHHHHHHHHHTT
T ss_pred ccHhhcCCCCHH--HHHHHHHcCCCcHHHHHhC---CHHHHHHhh--CcCHHHHHHHHHHHHHhhh
Confidence 456677755544 6699999999999999854 577787776 6788877788888887754
No 4
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=78.17 E-value=1.5 Score=44.74 Aligned_cols=62 Identities=24% Similarity=0.199 Sum_probs=50.6
Q ss_pred cceeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhhccCC
Q 011961 250 DEVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMG 316 (474)
Q Consensus 250 DeVwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~ 316 (474)
.+|-+|+..|-.-..-++|.++||+||++|+. .++..|.+++ |+|...=+.+++.|++++..
T Consensus 81 ~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~---~~~~~L~~~~--gis~~~~~~i~~~a~~~~~~ 142 (400)
T 3lda_A 81 VPIEKLQVNGITMADVKKLRESGLHTAEAVAY---APRKDLLEIK--GISEAKADKLLNEAARLVPM 142 (400)
T ss_dssp CBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHH---SCHHHHHTST--TCCHHHHHHHHHHHHHHSCC
T ss_pred cCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHh---CCHHHHHHHh--CCCHHHHHHHHHHHHHhccc
Confidence 46778888665556679999999999999985 5788999998 68888888888998877653
No 5
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=71.24 E-value=0.96 Score=39.20 Aligned_cols=61 Identities=31% Similarity=0.332 Sum_probs=50.1
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhhccCC
Q 011961 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMG 316 (474)
Q Consensus 251 eVwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~ 316 (474)
+|.+|+..|-.-..-++|.++|++||++. ...++..|.++- |+|...=+.+++=|++++..
T Consensus 24 ~I~~L~~~GIg~~~i~kL~eAG~~Tve~v---a~a~~~eL~~i~--GIse~ka~kIi~aA~kl~~~ 84 (114)
T 1b22_A 24 PISRLEQCGINANDVKKLEEAGFHTVEAV---AYAPKKELINIK--GISEAKADKILAEAAKLVPM 84 (114)
T ss_dssp CHHHHHHTTCSHHHHHHHHTTCCSSGGGB---TSSBHHHHHTTT--TCSTTHHHHHHHHHHHHSCC
T ss_pred cHHHHHhcCCCHHHHHHHHHcCcCcHHHH---HhCCHHHHHHcc--CCCHHHHHHHHHHHHHHccc
Confidence 68889965544566799999999999975 455788999987 68999999999999988753
No 6
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=67.66 E-value=1.1 Score=43.46 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=0.0
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhhcc
Q 011961 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCV 314 (474)
Q Consensus 251 eVwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 314 (474)
++.+|.+|+.. .-++|.++||+||++|+.. ++..|-++. |+|...=+.+++.|+.+.
T Consensus 13 ~~~~l~g~~~~--~~~~l~~~g~~t~~~~~~~---~~~~l~~~~--g~s~~~~~~~~~~~~~~~ 69 (324)
T 2z43_A 13 TINDLPGISQT--VINKLIEAGYSSLETLAVA---SPQDLSVAA--GIPLSTAQKIIKEARDAL 69 (324)
T ss_dssp ----------------------------------------------------------------
T ss_pred cHHHcCCCCHH--HHHHHHHcCCCcHHHHHcC---CHHHHHHhh--CCCHHHHHHHHHHHHhhc
Confidence 67888867655 5589999999999999854 455566665 456666666677776654
No 7
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=66.18 E-value=5 Score=39.64 Aligned_cols=58 Identities=29% Similarity=0.370 Sum_probs=45.4
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhhccC
Q 011961 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVM 315 (474)
Q Consensus 251 eVwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl 315 (474)
++.+|.+|+. ...++|.++||+||++++. .++..|-++. |+|...=+.+++.|.++..
T Consensus 36 ~l~~l~Gi~~--~~~~kL~~ag~~t~~~~~~---~~~~~L~~~~--~~s~~~~~~~l~~~~~~~~ 93 (349)
T 1pzn_A 36 SIEDLPGVGP--ATAEKLREAGYDTLEAIAV---ASPIELKEVA--GISEGTALKIIQAARKAAN 93 (349)
T ss_dssp CSSCCTTCCH--HHHHHHHTTTCCSHHHHHT---CCHHHHHHHH--CCCHHHHHHHHHHHHHHCS
T ss_pred cHHHcCCCCH--HHHHHHHHcCCCcHHHHHh---CCHHHHHhhc--CCCHHHHHHHHHHHhhhcc
Confidence 4666765554 5779999999999999875 4778899888 5787777888888887764
No 8
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=65.52 E-value=1.4 Score=43.27 Aligned_cols=59 Identities=27% Similarity=0.280 Sum_probs=0.0
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhhcc
Q 011961 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCV 314 (474)
Q Consensus 251 eVwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 314 (474)
++++|+.-|-.=..-++|.++||+||++|+.. ++..|.++. |+|...=+.+++.|.++.
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~---~~~~l~~~~--~is~~~~~~~~~~a~~~~ 84 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQMT---TRRALCNVK--GLSEAKVDKIKEAANKLI 84 (343)
T ss_dssp ----------------------------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhC---CHHHHHHhh--CCCHHHHHHHHHHHHhhc
Confidence 68889854444456689999999999999854 455666655 455555555666665543
No 9
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=63.83 E-value=4.2 Score=42.92 Aligned_cols=51 Identities=24% Similarity=0.360 Sum_probs=39.2
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhh
Q 011961 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARK 312 (474)
Q Consensus 252 VwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 312 (474)
|-+|-+||+.+ -++|...||.|++|+.++ +..|+..|| ...|..+.++|.-
T Consensus 340 V~kl~GIG~~t--~~~L~~lGI~TigDL~~~----~~~L~~~fG----~~~~~~l~~~a~G 390 (517)
T 3pzp_A 340 IRKVSGIGKVT--EKMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISLG 390 (517)
T ss_dssp GGGSTTCCHHH--HHHHHHTTCCBHHHHHHH----HHHHHHHSC----HHHHHHHHHHHTT
T ss_pred hhhhccccHHH--HHHHHHhCCCcHHHHHhh----HHHHHHHhC----hHHHHHHHHHHcC
Confidence 55556777654 489999999999999985 457888886 5678887777764
No 10
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=60.59 E-value=4.8 Score=41.24 Aligned_cols=54 Identities=26% Similarity=0.264 Sum_probs=39.0
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhhcc
Q 011961 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCV 314 (474)
Q Consensus 252 VwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 314 (474)
|-+|-+||+. .-++|...||.|++|+.+ .++..|++.|| .+....+.+||.--+
T Consensus 236 v~~l~GIG~~--t~~~L~~lGI~TigdLa~---~~~~~L~~~fG----~~~g~~L~~~a~G~d 289 (420)
T 3osn_A 236 IKEIPGIGYK--TAKCLEALGINSVRDLQT---FSPKILEKELG----ISVAQRIQKLSFGED 289 (420)
T ss_dssp GGGSTTCCHH--HHHHHHHTTCCSHHHHHH---SCHHHHHHHHH----HHHHHHHHHHHTTCC
T ss_pred HHHccCCCHH--HHHHHHHhCCCcHHHHhh---CCHHHHHHHhC----chHHHHHHHHhcCCC
Confidence 3334455544 568999999999999876 47899999997 345666777775433
No 11
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=59.18 E-value=5.2 Score=39.54 Aligned_cols=52 Identities=31% Similarity=0.362 Sum_probs=36.7
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhh
Q 011961 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARK 312 (474)
Q Consensus 252 VwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 312 (474)
|..|-+||+. .-++|...||+|++|+. ..++..|++.||. +.-..+.++|+-
T Consensus 180 v~~l~GiG~~--~~~~L~~~GI~Ti~dL~---~~~~~~L~~~fG~----~~g~~l~~~a~G 231 (356)
T 4dez_A 180 PDALWGVGPK--TTKKLAAMGITTVADLA---VTDPSVLTTAFGP----STGLWLLLLAKG 231 (356)
T ss_dssp GGGSTTCCHH--HHHHHHHTTCCSHHHHH---TSCHHHHHHHHCH----HHHHHHHHHHTT
T ss_pred HHHHcCCchh--HHHHHHHcCCCeecccc---cCCHHHHHHHhCC----hHHHHHHHHHcC
Confidence 3444467765 44889999999999986 4588999999973 333445556653
No 12
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=57.86 E-value=6 Score=40.70 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=38.7
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhh
Q 011961 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (474)
Q Consensus 252 VwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAk 311 (474)
|-+|-+||+. ..++|...||+|++|+.++ +..|++.|| .+.|..+..+|+
T Consensus 284 v~~l~GiG~~--~~~~L~~lGI~T~gdL~~~----~~~L~~~fG----~~~~~~l~~~a~ 333 (459)
T 1t94_A 284 IRKVSGIGKV--TEKMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISL 333 (459)
T ss_dssp GGGCTTSCHH--HHHHHHHTTCCBHHHHHHT----HHHHHHHSC----HHHHHHHHHHHT
T ss_pred HHhcCCcCHH--HHHHHHHcCCCcHHHHHhh----HHHHHHHhC----hHhHHHHHHHHc
Confidence 6667777765 4589999999999999874 357999997 456777777776
No 13
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=54.67 E-value=9.2 Score=39.08 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=38.8
Q ss_pred eeeeeeecccchhhhhhhh--cCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhh
Q 011961 252 VWRLEKIGKDGAFHKKLSA--AGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARK 312 (474)
Q Consensus 252 VwRLekIgKdG~~hk~L~~--~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 312 (474)
|-.|-+||+ ..-++|.. .||.|++|+.++. ++..|++.||. +....+..||+-
T Consensus 243 v~~l~GiG~--~~~~~L~~~~~GI~ti~dL~~~~--~~~~L~~~fG~----~~g~~l~~~a~G 297 (434)
T 2aq4_A 243 LDDLPGVGH--STLSRLESTFDSPHSLNDLRKRY--TLDALKASVGS----KLGMKIHLALQG 297 (434)
T ss_dssp GGGSTTCCH--HHHHHHHHHTTCCCSHHHHHHHC--CHHHHHHHHCS----SHHHHHHHHTTT
T ss_pred cccccCcCH--HHHHHHHHhcCCceEHHHHHhcC--CHHHHHHHhCH----HHHHHHHHHhcC
Confidence 444445564 46689999 8999999999875 78999999983 345555566653
No 14
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=50.59 E-value=5.5 Score=33.40 Aligned_cols=73 Identities=21% Similarity=0.290 Sum_probs=48.2
Q ss_pred eeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhhccCCCcEEEEecCceEEEEccc
Q 011961 255 LEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPI 334 (474)
Q Consensus 255 LekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~~kly~y~~~nv~L~FN~i 334 (474)
|-+||+. .-+.|.+.||.||+||..+ | +.+.|..+.++-.+ +-+|..
T Consensus 9 LPNig~~--~e~~L~~~GI~t~~~Lr~~------------G---a~~ay~rLk~~~~~----------------~~~~~L 55 (93)
T 3mab_A 9 LPNIGKV--LEQDLIKAGIKTPVELKDV------------G---SKEAFLRIWENDSS----------------VCMSEL 55 (93)
T ss_dssp STTCCHH--HHHHHHHTTCCSHHHHHHH------------C---HHHHHHHHHHHCTT----------------CCHHHH
T ss_pred CCCCCHH--HHHHHHHcCCCCHHHHHhC------------C---HHHHHHHHHHhCCC----------------CCHHHH
Confidence 3344444 2367999999999988754 2 25566666543211 124778
Q ss_pred eeeeeEEECCeEeeCCCCCHHhHHHHHHH
Q 011961 335 CQVVRAVINNQTYLTRDLTKLNRTYIENT 363 (474)
Q Consensus 335 ~~lVGa~f~G~~~~~~~L~~~qk~~V~~L 363 (474)
|.|+||.-+ +...+|+..+|..+.++
T Consensus 56 ~aL~gAi~G---~~w~~l~~~~K~~L~~~ 81 (93)
T 3mab_A 56 YALEGAVQG---IRWHGLDEAKKIELKKF 81 (93)
T ss_dssp HHHHHHHHT---SCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHcC---CcHHHCCHHHHHHHHHH
Confidence 899999766 55667999988877655
No 15
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=49.21 E-value=6.1 Score=38.93 Aligned_cols=55 Identities=25% Similarity=0.337 Sum_probs=40.5
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhhccC
Q 011961 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVM 315 (474)
Q Consensus 252 VwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl 315 (474)
|..|-+||+ ..-++|...||+|++|+.+ .++..|++.|| ......+..||+--+.
T Consensus 180 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG----~~~g~~l~~~a~G~d~ 234 (352)
T 1jx4_A 180 IADVPGIGN--ITAEKLKKLGINKLVDTLS---IEFDKLKGMIG----EAKAKYLISLARDEYN 234 (352)
T ss_dssp GGGSTTCCH--HHHHHHHTTTCCBGGGGGS---SCHHHHHHHHC----HHHHHHHHHHHTTCCC
T ss_pred CCcccccCH--HHHHHHHHcCCchHHHHHC---CCHHHHHHhcC----hhHHHHHHHHhCCCCC
Confidence 555556665 4668999999999999864 67899999997 2335667777774443
No 16
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=46.79 E-value=7.3 Score=38.44 Aligned_cols=55 Identities=22% Similarity=0.319 Sum_probs=40.4
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhhccC
Q 011961 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVM 315 (474)
Q Consensus 252 VwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl 315 (474)
|..|-+||+ ...++|...||+|++|+.+ .++..|++.|| ......+..||+--+.
T Consensus 181 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG----~~~g~~l~~~a~G~d~ 235 (354)
T 3bq0_A 181 IDEIPGIGS--VLARRLNELGIQKLRDILS---KNYNELEKITG----KAKALYLLKLAQNKYS 235 (354)
T ss_dssp STTSTTCCH--HHHHHHTTTTCCBGGGGGG---SCHHHHHHHHC----HHHHHHHHHHHTTCCC
T ss_pred cccccCcCH--HHHHHHHHcCCccHHHHhc---CCHHHHHHHHC----HHHHHHHHHHhCCCCC
Confidence 444445664 4668999999999999875 67899999997 2336667778874443
No 17
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=46.40 E-value=14 Score=36.12 Aligned_cols=55 Identities=13% Similarity=0.221 Sum_probs=43.0
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhh
Q 011961 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARK 312 (474)
Q Consensus 251 eVwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 312 (474)
+..-|.+|+.+- -++|.++||.|++|+.. .+++++.++| +++++.-+.+.+-|..
T Consensus 158 pL~Qlp~i~~~~--~~~l~~~~i~s~~~l~~---~~~~e~~~ll--~~~~~~~~~v~~~~~~ 212 (328)
T 3im1_A 158 PLRQIPHFNNKI--LEKCKEINVETVYDIMA---LEDEERDEIL--TLTDSQLAQVAAFVNN 212 (328)
T ss_dssp GGGGSTTCCHHH--HHHHHHTTCCSHHHHHH---SCHHHHHHHC--CCCHHHHHHHHHHHHH
T ss_pred ceeCCCCCCHHH--HHHHHhCCCCCHHHHhc---CCHHHHHhHh--CCCHHHHHHHHHHHHh
Confidence 356777887763 46799999999999865 4889999998 6888888887776654
No 18
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=44.93 E-value=7.7 Score=38.76 Aligned_cols=52 Identities=23% Similarity=0.350 Sum_probs=38.0
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhh
Q 011961 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARK 312 (474)
Q Consensus 252 VwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 312 (474)
|..|-+||+. .-++|...||.|++|+.+ .++..|++.|| .+....+..+|+-
T Consensus 181 v~~l~GiG~~--~~~~L~~~GI~Ti~dL~~---~~~~~L~~~fG----~~~g~~l~~~a~G 232 (362)
T 4f4y_A 181 IDEIPGIGSV--LARRLNELGIQKLRDILS---KNYNELEKITG----KAKALYLLKLAQD 232 (362)
T ss_dssp STTSTTCCST--THHHHHHTTCCBGGGGTT---SCHHHHHHHHC----HHHHHHHHHHHTT
T ss_pred hhhccCCCHH--HHHHHHHcCCChHHHHhc---CCHHHHHHHhC----hHHHHHHHHHhcC
Confidence 3334466665 458999999999999764 58899999997 3556666666654
No 19
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=35.83 E-value=32 Score=33.76 Aligned_cols=55 Identities=13% Similarity=0.277 Sum_probs=42.5
Q ss_pred ceeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhh
Q 011961 251 EVWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARK 312 (474)
Q Consensus 251 eVwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 312 (474)
+..-|.+|+.+ .-++|.++||.|++||.. .+++++.++|| +++..-+.+.+-+..
T Consensus 162 pL~Qlp~i~~~--~~~~l~~~~i~s~~~l~~---~~~~e~~~ll~--l~~~~~~~i~~~~~~ 216 (339)
T 2q0z_X 162 YLKQLPHFTSE--HIKRCTDKGVESVFDIME---MEDEERNALLQ--LTDSQIADVARFCNR 216 (339)
T ss_dssp GGGGSTTCCHH--HHHHHHHTTCCSHHHHHH---SCHHHHHHHHC--CCHHHHHHHHHHHTT
T ss_pred ceecCCCCCHH--HHHHHHhcCCCCHHHHHh---CCHHHHHHHHC--CCHHHHHHHHHHHHh
Confidence 46678888765 457899999999999875 68999999995 787776766655443
No 20
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=35.40 E-value=22 Score=28.51 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=24.5
Q ss_pred hhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHH
Q 011961 266 KKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTM 307 (474)
Q Consensus 266 k~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v 307 (474)
.-|+.+||+||+|+++. .++.|.++= |+-.|.-+.+.
T Consensus 22 NcLkragI~Tv~dL~~~---s~~dLlki~--n~G~kSl~EI~ 58 (73)
T 1z3e_B 22 NCLKRAGINTVQELANK---TEEDMMKVR--NLGRKSLEEVK 58 (73)
T ss_dssp HHHHHTTCCBHHHHHTS---CHHHHHTST--TCCHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHcC---CHHHHHHcC--CCCHHHHHHHH
Confidence 45889999999998874 556666663 33344444443
No 21
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=35.31 E-value=21 Score=37.73 Aligned_cols=52 Identities=31% Similarity=0.461 Sum_probs=36.3
Q ss_pred eeeeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhh
Q 011961 252 VWRLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARK 312 (474)
Q Consensus 252 VwRLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAkt 312 (474)
|..|-+||+. .-++|...||.|++|+.+ .++..|++.||. +....+..+|+-
T Consensus 317 V~~l~GIG~~--t~~kL~~lGI~TigDLa~---~~~~~L~~~fG~----~~g~~L~~~a~G 368 (504)
T 3gqc_A 317 VTNLPGVGHS--MESKLASLGIKTCGDLQY---MTMAKLQKEFGP----KTGQMLYRFCRG 368 (504)
T ss_dssp GGGSTTCCHH--HHHHHHHTTCCBHHHHTT---SCHHHHHHHHCH----HHHHHHHHHTTT
T ss_pred hhHhhCcCHH--HHHHHHHcCCCcHHHHHh---ccHHHHHHhhCh----hHHHHHHHHhcC
Confidence 4444456653 558999999999999864 588999999973 233444455553
No 22
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=33.91 E-value=28 Score=28.90 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=25.3
Q ss_pred hhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHH
Q 011961 266 KKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQ 308 (474)
Q Consensus 266 k~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~ 308 (474)
.-|+.+||+||+|+++. +++.|.++= |+-.|.-+.+.+
T Consensus 25 NcLkragI~Tv~dL~~~---se~dLlki~--n~G~KSl~EI~~ 62 (86)
T 3k4g_A 25 NCLXAEAIHYIGDLVQR---TEVELLXTP--NLGXXSLTEIXD 62 (86)
T ss_dssp HHHHHTTCCBHHHHHHS---CHHHHHTST--TCCHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHhC---CHHHHhhcc--ccCcccHHHHHH
Confidence 45999999999998875 455565552 344555555544
No 23
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=24.76 E-value=42 Score=26.50 Aligned_cols=50 Identities=24% Similarity=0.380 Sum_probs=40.2
Q ss_pred cchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhhccC
Q 011961 261 DGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVM 315 (474)
Q Consensus 261 dG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl 315 (474)
+-..-++|..+|++||++. .+.+++.|-.|- |++...=+.+.+-|+..+.
T Consensus 15 ~e~~a~~L~~~Gf~tve~v---A~~~~~eL~~I~--G~dE~~a~~l~~~A~~~l~ 64 (70)
T 1u9l_A 15 DEDFATVLVEEGFSTLEEL---AYVPMKELLEIE--GLDEPTVEALRERAKNALA 64 (70)
T ss_dssp CHHHHHHHHHTTCCCHHHH---HHSCHHHHTTST--TCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCcCcHHHH---HcCCHHHHhhcc--CCCHHHHHHHHHHHHHHHH
Confidence 3446689999999999964 456778888875 7899999999999987754
No 24
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=23.94 E-value=26 Score=28.57 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=23.8
Q ss_pred hhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHH
Q 011961 266 KKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTM 307 (474)
Q Consensus 266 k~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v 307 (474)
.-|+.+||+||+|+++. +++.|.++= |+-.|.-+.+.
T Consensus 29 NcLk~agI~Tv~dL~~~---se~dLlki~--n~G~kSl~EI~ 65 (79)
T 3gfk_B 29 NCLKRAGINTVQELANK---TEEDMMKVR--NLGRKSLEEVK 65 (79)
T ss_dssp HHHHHTTCCBHHHHTTC---CHHHHTTST--TCHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHhC---CHHHHHHcC--CCCHhHHHHHH
Confidence 56999999999998764 555555552 33344444443
No 25
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=23.20 E-value=52 Score=34.86 Aligned_cols=48 Identities=27% Similarity=0.556 Sum_probs=36.5
Q ss_pred eeeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhh
Q 011961 254 RLEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHAR 311 (474)
Q Consensus 254 RLekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAk 311 (474)
+|.+|+.. ..++|.++||.|++|+. .++++|.+++| .+.-+.+++-|+
T Consensus 661 qlp~i~~~--rar~L~~~g~~s~~~l~----~~~~~l~~~l~----~~~~~~i~~~~~ 708 (715)
T 2va8_A 661 QISGVGRK--RARLLYNNGIKELGDVV----MNPDKVKNLLG----QKLGEKVVQEAA 708 (715)
T ss_dssp TSTTCCHH--HHHHHHHTTCCSHHHHH----HCHHHHHHHHC----HHHHHHHHHHHH
T ss_pred hCCCCCHH--HHHHHHHcCCCCHHHHh----CCHHHHHHHhC----hhHHHHHHHHHH
Confidence 44445443 45688999999999966 68999999995 777888877655
No 26
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=21.11 E-value=48 Score=27.55 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=45.8
Q ss_pred eeeecccchhhhhhhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhhccCCCcEEEEecCceEEEEccc
Q 011961 255 LEKIGKDGAFHKKLSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCVMGNKLYIFRGHNCIILLNPI 334 (474)
Q Consensus 255 LekIgKdG~~hk~L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCvl~~kly~y~~~nv~L~FN~i 334 (474)
|-.||+. .-+.|.+.||+||+||..+=. ..+|..+.+.-. + +.++..
T Consensus 9 LPNiG~~--~e~~L~~vGI~s~e~L~~~Ga---------------~~ay~rL~~~~~--------------~--~c~~~L 55 (93)
T 3bqs_A 9 LPNIGKV--LEQDLIKAGIKTPVELKDVGS---------------KEAFLRIWENDS--------------S--VCMSEL 55 (93)
T ss_dssp STTCCHH--HHHHHHHTTCCSHHHHHHHHH---------------HHHHHHHHTTCT--------------T--CCHHHH
T ss_pred CCCCCHH--HHHHHHHcCCCCHHHHHhCCH---------------HHHHHHHHHHCC--------------C--CCHHHH
Confidence 3444444 337799999999998876422 445555544311 1 112667
Q ss_pred eeeeeEEECCeEeeCCCCCHHhHHHHHHH
Q 011961 335 CQVVRAVINNQTYLTRDLTKLNRTYIENT 363 (474)
Q Consensus 335 ~~lVGa~f~G~~~~~~~L~~~qk~~V~~L 363 (474)
|.|+||.-+ +...+|+...|..+.+.
T Consensus 56 ~aL~gAi~G---~~w~~l~~~~K~~L~~~ 81 (93)
T 3bqs_A 56 YALEGAVQG---IRWHGLDEAKKIELKKF 81 (93)
T ss_dssp HHHHHHHHT---SCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHcC---CCHHHCCHHHHHHHHHH
Confidence 788888655 55667888888877654
No 27
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=20.95 E-value=28 Score=35.59 Aligned_cols=54 Identities=15% Similarity=0.264 Sum_probs=36.2
Q ss_pred eeeeeeecccchhhhh-hhhcCCccHHHHHHHhhcChHHHHHHhcCCCChhhHHHHHHHhhhcc
Q 011961 252 VWRLEKIGKDGAFHKK-LSAAGIKTVQDFLKLSIVEPQRLRKILGPGMSEKMWEVTMQHARKCV 314 (474)
Q Consensus 252 VwRLekIgKdG~~hk~-L~~~gI~TV~dFLkl~~~d~~kLR~iLg~gmS~k~We~~v~HAktCv 314 (474)
|-.|-+||+. .-++ |...||.|++|+.+ .++..|++.|| .+.-..+.+||+--+
T Consensus 255 v~~l~GiG~~--~~~~lL~~lGI~TigdLa~---~~~~~L~~~fG----~~~g~~L~~~a~G~d 309 (435)
T 4ecq_A 255 IRKIRSLGGK--LGASVIEILGIEYMGELTQ---FTESQLQSHFG----EKNGSWLYAMCRGIE 309 (435)
T ss_dssp GGGSTTCSSH--HHHHHHHHHTCCBGGGGGG---SCHHHHHHHHC----HHHHHHHHHHTTTCC
T ss_pred HHHhcCCCHH--HHHHHHHHcCCCcHHHHhh---CCHHHHHHHhC----ccHHHHHHHHhhCCC
Confidence 4444456543 3344 89999999999765 58899999997 344445556666433
Done!