Query 011962
Match_columns 474
No_of_seqs 347 out of 2523
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 07:08:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02805 D-lactate dehydrogena 100.0 1.9E-77 4E-82 639.8 41.6 457 10-474 1-555 (555)
2 PRK11230 glycolate oxidase sub 100.0 6E-62 1.3E-66 517.4 38.1 354 113-469 19-473 (499)
3 TIGR00387 glcD glycolate oxida 100.0 2.4E-58 5.3E-63 481.3 29.0 313 154-466 1-413 (413)
4 COG0277 GlcD FAD/FMN-containin 100.0 1.4E-52 3E-57 443.5 32.5 347 119-470 2-458 (459)
5 KOG1232 Proteins containing th 100.0 1.6E-52 3.4E-57 409.2 19.8 359 104-468 44-511 (511)
6 KOG1231 Proteins containing th 100.0 4.1E-51 8.8E-56 408.5 20.4 316 147-470 60-499 (505)
7 PLN02441 cytokinin dehydrogena 100.0 4.6E-40 9.9E-45 347.6 30.3 333 123-467 39-516 (525)
8 PRK11183 D-lactate dehydrogena 100.0 1.9E-40 4.1E-45 345.2 20.3 332 113-466 3-551 (564)
9 PRK11282 glcE glycolate oxidas 100.0 1.2E-39 2.6E-44 330.7 20.4 168 159-329 3-174 (352)
10 KOG1233 Alkyl-dihydroxyacetone 100.0 1.2E-37 2.5E-42 305.4 26.5 354 110-468 114-613 (613)
11 TIGR01678 FAD_lactone_ox sugar 100.0 6.9E-37 1.5E-41 320.5 28.1 305 148-463 12-436 (438)
12 TIGR01679 bact_FAD_ox FAD-link 100.0 2.9E-36 6.3E-41 315.1 25.3 298 148-464 9-411 (419)
13 TIGR01676 GLDHase galactonolac 100.0 7.8E-35 1.7E-39 307.6 29.3 172 149-328 60-232 (541)
14 TIGR01677 pln_FAD_oxido plant- 100.0 1.3E-34 2.9E-39 309.5 28.2 173 149-326 30-213 (557)
15 PLN02465 L-galactono-1,4-lacto 100.0 1.9E-33 4E-38 299.3 27.8 170 149-326 95-265 (573)
16 PRK13905 murB UDP-N-acetylenol 100.0 4.6E-33 1E-37 278.6 17.4 258 143-422 23-286 (298)
17 PRK14652 UDP-N-acetylenolpyruv 100.0 1.2E-32 2.7E-37 274.9 20.1 281 112-422 3-289 (302)
18 PRK13906 murB UDP-N-acetylenol 100.0 2E-31 4.4E-36 266.8 18.8 281 113-422 4-291 (307)
19 PRK12436 UDP-N-acetylenolpyruv 100.0 2E-31 4.4E-36 266.7 18.7 281 114-423 5-292 (305)
20 TIGR00179 murB UDP-N-acetyleno 100.0 5.5E-31 1.2E-35 261.4 17.8 263 143-422 5-274 (284)
21 PRK14653 UDP-N-acetylenolpyruv 100.0 7.2E-30 1.6E-34 253.7 18.7 260 143-422 26-288 (297)
22 PRK13903 murB UDP-N-acetylenol 100.0 1.4E-28 3.1E-33 250.1 17.8 260 143-422 25-350 (363)
23 PRK14649 UDP-N-acetylenolpyruv 100.0 1.2E-28 2.7E-33 245.5 17.0 266 143-422 13-285 (295)
24 COG0812 MurB UDP-N-acetylmuram 100.0 4.6E-28 1E-32 236.6 19.0 261 143-423 13-278 (291)
25 PRK14650 UDP-N-acetylenolpyruv 100.0 7.1E-28 1.5E-32 238.8 16.3 260 143-422 25-290 (302)
26 PF01565 FAD_binding_4: FAD bi 100.0 3.5E-28 7.5E-33 216.5 11.0 136 151-287 1-138 (139)
27 PRK00046 murB UDP-N-acetylenol 99.9 2.7E-26 5.8E-31 230.8 18.9 266 143-422 13-325 (334)
28 KOG4730 D-arabinono-1, 4-lacto 99.9 7.7E-26 1.7E-30 227.3 20.3 172 150-328 49-221 (518)
29 PRK14648 UDP-N-acetylenolpyruv 99.9 2.9E-26 6.2E-31 230.3 15.5 264 143-422 22-332 (354)
30 PRK14651 UDP-N-acetylenolpyruv 99.9 6.2E-24 1.3E-28 207.9 15.0 237 143-416 13-256 (273)
31 PF02913 FAD-oxidase_C: FAD li 99.9 2.3E-22 5.1E-27 194.4 10.4 122 346-467 127-248 (248)
32 PRK13904 murB UDP-N-acetylenol 99.9 5.8E-22 1.3E-26 192.2 12.0 234 143-422 11-248 (257)
33 KOG1262 FAD-binding protein DI 99.6 1.4E-15 3E-20 150.7 8.0 128 198-329 105-233 (543)
34 PF09330 Lact-deh-memb: D-lact 97.8 3.5E-05 7.5E-10 74.7 6.1 104 347-466 179-282 (291)
35 PF09265 Cytokin-bind: Cytokin 97.6 0.00015 3.3E-09 71.6 6.9 116 348-467 142-279 (281)
36 PF04030 ALO: D-arabinono-1,4- 97.2 0.00085 1.8E-08 66.0 7.4 113 348-464 126-253 (259)
37 PLN00107 FAD-dependent oxidore 97.1 0.0024 5.2E-08 62.0 8.6 112 349-463 64-195 (257)
38 PF08031 BBE: Berberine and be 97.0 0.00039 8.5E-09 50.0 2.2 31 435-466 14-44 (47)
39 PRK09799 putative oxidoreducta 96.9 0.001 2.2E-08 65.6 4.6 143 153-320 4-155 (258)
40 TIGR03312 Se_sel_red_FAD proba 96.4 0.0035 7.5E-08 61.8 4.2 99 154-256 4-109 (257)
41 PF02873 MurB_C: UDP-N-acetyle 96.3 0.0021 4.5E-08 54.5 1.7 78 342-421 17-94 (105)
42 TIGR02963 xanthine_xdhA xanthi 96.1 0.0084 1.8E-07 64.1 5.8 102 151-256 192-303 (467)
43 PF00941 FAD_binding_5: FAD bi 95.4 0.037 8.1E-07 51.0 6.4 101 152-256 3-115 (171)
44 PRK09971 xanthine dehydrogenas 94.8 0.035 7.7E-07 55.7 4.6 100 153-256 6-118 (291)
45 PLN02906 xanthine dehydrogenas 93.2 0.11 2.3E-06 62.5 5.3 101 152-256 229-350 (1319)
46 PLN00192 aldehyde oxidase 93.1 0.16 3.4E-06 61.1 6.4 106 151-256 233-352 (1344)
47 TIGR03195 4hydrxCoA_B 4-hydrox 92.1 0.28 6.1E-06 49.9 5.8 100 153-256 6-117 (321)
48 TIGR02969 mam_aldehyde_ox alde 90.6 0.4 8.6E-06 57.8 6.0 102 152-257 237-359 (1330)
49 TIGR03199 pucC xanthine dehydr 90.1 0.34 7.4E-06 47.9 4.1 96 157-256 1-109 (264)
50 COG4630 XdhA Xanthine dehydrog 88.9 0.77 1.7E-05 46.9 5.6 103 149-256 201-314 (493)
51 COG1319 CoxM Aerobic-type carb 68.0 11 0.00025 37.6 5.8 102 151-256 3-117 (284)
52 COG4981 Enoyl reductase domain 44.2 28 0.0006 37.7 4.1 75 149-232 150-232 (717)
53 PRK04322 peptidyl-tRNA hydrola 27.2 89 0.0019 26.7 3.9 32 148-179 45-76 (113)
54 PF10740 DUF2529: Protein of u 25.8 1.2E+02 0.0025 28.1 4.5 67 153-222 86-153 (172)
55 KOG3282 Uncharacterized conser 25.4 1.2E+02 0.0025 28.4 4.4 31 149-179 123-153 (190)
56 PF15608 PELOTA_1: PELOTA RNA 23.7 84 0.0018 26.4 3.0 34 150-183 55-89 (100)
57 cd07033 TPP_PYR_DXS_TK_like Py 23.6 1.1E+02 0.0023 27.4 4.0 28 153-180 126-153 (156)
58 PRK03971 putative deoxyhypusin 23.3 54 0.0012 33.6 2.1 103 164-271 194-311 (334)
59 cd02407 PTH2_family Peptidyl-t 22.3 1.4E+02 0.003 25.6 4.1 31 148-178 47-77 (115)
60 cd02742 GH20_hexosaminidase Be 22.2 69 0.0015 32.1 2.7 23 157-179 68-90 (303)
61 cd06568 GH20_SpHex_like A subg 21.9 71 0.0015 32.6 2.7 23 158-180 72-94 (329)
62 cd06565 GH20_GcnA-like Glycosy 21.5 73 0.0016 32.0 2.7 23 157-179 56-78 (301)
63 COG0351 ThiD Hydroxymethylpyri 21.1 4.9E+02 0.011 25.8 8.2 111 109-240 115-229 (263)
64 KOG0430 Xanthine dehydrogenase 20.8 1.7E+02 0.0037 34.9 5.5 102 152-257 215-332 (1257)
65 PF00728 Glyco_hydro_20: Glyco 20.6 66 0.0014 32.6 2.2 29 157-185 69-99 (351)
66 PF01981 PTH2: Peptidyl-tRNA h 20.4 1.7E+02 0.0038 24.8 4.4 38 148-185 48-86 (116)
67 COG1154 Dxs Deoxyxylulose-5-ph 20.1 3.1E+02 0.0066 30.5 7.0 82 150-238 440-529 (627)
No 1
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=1.9e-77 Score=639.75 Aligned_cols=457 Identities=79% Similarity=1.241 Sum_probs=392.2
Q ss_pred HhhhchhhhhccccCCCCCCCcccccccccccCCCCCCCCCCccccccchhhHHHHHhhccccccccCCCCcccCccccc
Q 011962 10 RLRSSSKSILSSLRTSKFSTQNTRTRTLITLSSDNSSRNGTPFQLFSASLLPLALAASAGSLAMQSQTHPSLCDSSALDS 89 (474)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (474)
|+|+.+++.|.+.+++.+...|.+ ++++.+++.++. ++++| |..-++++++.++.+.+.....+.++|+.+....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (555)
T PLN02805 1 RLRSLLRTSRPNRALPSFPKSTLD---VTVTTPVKGRRR-LPTSW-SSSLLPLAIAASAGSLAYLNQSNPSLCDSSDLDS 75 (555)
T ss_pred CcchhhhhccccccCCCCcccccC---ccccccccCCCC-CCCcc-ccccchHHHHHHHHHHHHhcCcceeecccccccc
Confidence 678899999999998866654421 222333333333 44444 2223445556666555555556668887766666
Q ss_pred CCcccCCCCccceeecCCCCCCCHHHHHHHHhhcCCCcccChhhhhhhcCCCCCcccCCCCCCEEEEcCCHHHHHHHHHH
Q 011962 90 RDVNIGGKGSTEYVVKGSHKEIPQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKC 169 (474)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~P~~Vv~P~s~eeV~~iv~~ 169 (474)
+ +|++.+++++.++..+.++++++++|++++++++.++.++++.|+++...+++....|.+|++|+|++||+++|++
T Consensus 76 ~---~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~v~~~~~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~ivk~ 152 (555)
T PLN02805 76 R---VGGKGSTEFVVKGEHKLVPQELIDELKAILQDNMTLDYDERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKIVKS 152 (555)
T ss_pred c---ccCccccchhhccccccchHHHHHHHHHhcCCceecCHHHHHHhccCcccccccCCCCCEEEEcCCHHHHHHHHHH
Confidence 6 8999999988888888888999999999999889999999998888765555544579999999999999999999
Q ss_pred hhcCCCcEEEEcCCCCCCCCCcCCCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHHHHHccCCCeeCCCCCCCcee
Q 011962 170 CDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGPGATI 249 (474)
Q Consensus 170 a~~~~~~v~~~GgG~s~~g~~~~~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~~~~~~~~~~tv 249 (474)
|+++++||+|+|||||+.|++++.++||+|||++||+|.++|+++.+|+||||+++.+|+++|.++|+.+|.++++.+||
T Consensus 153 a~~~~ipv~prGgGts~~G~~~~~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~L~~~L~~~Gl~~p~~p~~~~TI 232 (555)
T PLN02805 153 CNKYKVPIVPYGGATSIEGHTLAPHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNEYLEPYGLFFPLDPGPGATI 232 (555)
T ss_pred HHHCCCcEEEECCCCCCCCCccCCCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHHHHHHHHcCCEeCCCCccccCh
Confidence 99999999999999999999988778999999999999999999999999999999999999999999999999988999
Q ss_pred cccccccccCCCccccccccceEEEEEEEecCCeEEEcccccccCcCCCchhhhhhccCCCeeEEEEEEEEeEecCchhH
Q 011962 250 GGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSV 329 (474)
Q Consensus 250 GG~i~~~~~G~~s~~yG~~~d~V~~~~vVl~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~ 329 (474)
||++++|++|..+.+||.++|+|++++||++||++++++....+++.||||+|+++|++|+|||||+++||++|.|+...
T Consensus 233 GG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~ 312 (555)
T PLN02805 233 GGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSV 312 (555)
T ss_pred hhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceE
Confidence 99999999999999999999999999999999999998776677778999999999999999999999999999998654
Q ss_pred --------------------------------------------------------------------------------
Q 011962 330 -------------------------------------------------------------------------------- 329 (474)
Q Consensus 330 -------------------------------------------------------------------------------- 329 (474)
T Consensus 313 ~~~~~f~~~~~a~~av~~i~~~g~~psa~ElmD~~~~~~~~~~~~~~~p~~~~Ll~e~~g~~~~~~~~~~~~~~i~~~~g 392 (555)
T PLN02805 313 VAMCNFPTIKDAADVAIATMLSGIQVSRVELLDEVQIRAINMANGKNLPEAPTLMFEFIGTEAYAREQTLIVQKIASKHN 392 (555)
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCCcEEEEEECHHHHHHHHHhcCCCCCcceEEEEEEecCcHHHHHHHHHHHHHHHhCC
Confidence
Q ss_pred ----------HHHHHHHHHHhc--------CCCcccccccccccchhHHHHHHHHHHHhhcCCCeEEEEeecCCCCeeEE
Q 011962 330 ----------MRKEALWACFAM--------EPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTV 391 (474)
Q Consensus 330 ----------~~~~~~w~~~~~--------~~~~~~~~~d~~vp~~~l~~~~~~~~~~~~~~~l~~~~~gh~~~g~~h~~ 391 (474)
.+...+|..+.. .+....+.+|++||+++++++++.++++++++++....+||+||||+|++
T Consensus 393 ~~~~~~a~~~~e~~~lW~~R~~~~~~~~~~~~~~~~~~~DvaVP~s~L~e~i~~~~~~~~~~~~~~~~~gHaGdGnlH~~ 472 (555)
T PLN02805 393 GSDFVFAEEPEAKKELWKIRKEALWACFAMEPKYEAMITDVCVPLSHLAELISRSKKELDASPLVCTVIAHAGDGNFHTI 472 (555)
T ss_pred CceEEEeCCHHHHHHHHHHHHHHHHHHhhcCCCCceeEEEEEEEHHHHHHHHHHHHHHHHHcCCeEEEEEEcCCCcEEEE
Confidence 011345665421 12222367899999999999999999999999999999999999999999
Q ss_pred EEeCCCChHHHHHHHHHHHHHHHHHHhcCCeeeecCCCCcchHHHHHHhcCHHHHHHHHHHHHhcCCCCCCCCCCeeCCC
Q 011962 392 ILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLIPPH 471 (474)
Q Consensus 392 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~gG~~s~ehg~G~~~~~~l~~~~g~~~~~~l~~iK~~~DP~gilNPGk~~~~~ 471 (474)
++++..++++.++++++.+++.+.++++||++++|||+|+.|.+|++++++++.++.|++||+.|||+|||||||+||+|
T Consensus 473 i~~~~~~~~~~~~~~~~~~~i~~~~~~~gGsiSgEHGiG~~k~~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~~~ 552 (555)
T PLN02805 473 ILFDPSQEDQRREAERLNHFMVHTALSMEGTCTGEHGVGTGKMKYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIPPH 552 (555)
T ss_pred eccCCCCHHHHHHHHHHHHHHHHHHHHcCCeEeEECCCChhHHHHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeCcc
Confidence 99887766666778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 011962 472 ICF 474 (474)
Q Consensus 472 ~~~ 474 (474)
+||
T Consensus 553 ~~~ 555 (555)
T PLN02805 553 VCF 555 (555)
T ss_pred ccC
Confidence 998
No 2
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=6e-62 Score=517.38 Aligned_cols=354 Identities=26% Similarity=0.481 Sum_probs=313.4
Q ss_pred HHHHHHHHhhcCC-CcccChhhhhhhcCCCCCcccCCCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCc
Q 011962 113 QELVDELKAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191 (474)
Q Consensus 113 ~~~~~~L~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~ 191 (474)
++++++|+++++. +|.++.+++..|+.+..+.++ ..|.+|++|+|++||+++|++|+++++||+++|+||++.|++.
T Consensus 19 ~~~~~~l~~~~g~~~v~~~~~~~~~y~~d~~~~~~--~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~ 96 (499)
T PRK11230 19 TSLLMALREHLPGLEILHTDEELIPYECDGLSAYR--TRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGAL 96 (499)
T ss_pred HHHHHHHHHhcCcceEEcCHHHHHHhccCcccccC--CCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcc
Confidence 5688999999986 688888888888777544444 4899999999999999999999999999999999999999888
Q ss_pred CCCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHHHHHccCCCeeCCCCCC--CceecccccccccCCCcccccccc
Q 011962 192 SPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSLAVRYGTMR 269 (474)
Q Consensus 192 ~~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~~~~~~~~--~~tvGG~i~~~~~G~~s~~yG~~~ 269 (474)
+..+||+|||++||+|+++|+++.+|+||||+++.+|+++|.++|+.+++++++ .+||||++++|++|+.+.+||.+.
T Consensus 97 ~~~~gividl~~ln~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~ 176 (499)
T PRK11230 97 PLEKGVLLVMARFNRILDINPVGRRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTV 176 (499)
T ss_pred cCCCcEEEEcccCCCceEEcCCCCEEEEcCCccHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChh
Confidence 777899999999999999999999999999999999999999999998887765 589999999999999999999999
Q ss_pred ceEEEEEEEecCCeEEEcccccccCcCCCchhhhhhccCCCeeEEEEEEEEeEecCchhH--------------------
Q 011962 270 DNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSV-------------------- 329 (474)
Q Consensus 270 d~V~~~~vVl~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~-------------------- 329 (474)
|+|++++||++||++++++... .++.||||+++++|++|+|||||++|||++|.|+...
T Consensus 177 d~v~~levVl~~G~i~~~~~~~-~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 177 HNLLKVEILTLDGEALTLGSDA-LDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred hheeEEEEEcCCCcEEEeCCcc-CCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 9999999999999999986553 3347999999999999999999999999999998643
Q ss_pred ------------------------------------------------------------------------HHHHHHHH
Q 011962 330 ------------------------------------------------------------------------MRKEALWA 337 (474)
Q Consensus 330 ------------------------------------------------------------------------~~~~~~w~ 337 (474)
.....+|.
T Consensus 256 ~~~~~p~~~el~d~~~~~~~~~~~~~~~p~~~~~~ll~e~~g~~~~v~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~W~ 335 (499)
T PRK11230 256 AAGIIPGGLEMMDNLSIRAAEDFIHAGYPVDAEAILLCELDGVESDVQEDCERVNDILLKAGATDVRLAQDEAERVRFWA 335 (499)
T ss_pred hcCCCcEEEEeeCHHHHHHHHHhcCCCCCCCcceEEEEEecCCchHHHHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHH
Confidence 01123665
Q ss_pred HHhc-CC-----CcccccccccccchhHHHHHHHHHHHhhcCCCeEEEEeecCCCCeeEEEEeCCCChHHHHHHHHHHHH
Q 011962 338 CFAM-EP-----SFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRF 411 (474)
Q Consensus 338 ~~~~-~~-----~~~~~~~d~~vp~~~l~~~~~~~~~~~~~~~l~~~~~gh~~~g~~h~~~~~~~~~~~~~~~~~~l~~~ 411 (474)
.+.. .+ ....+..|++||+++++++++.++++.+++++....+||+++||+|+++.++..++++.++++++.+.
T Consensus 336 ~R~~~~~~~~~~~~~~~~~dv~vP~~~l~~~~~~~~~~~~~~~~~~~~~gH~GdGn~H~~i~~~~~~~~~~~~~~~~~~~ 415 (499)
T PRK11230 336 GRKNAFPAVGRISPDYYCMDGTIPRRELPGVLEGIARLSQQYGLRVANVFHAGDGNMHPLILFDANEPGELERAEALGGK 415 (499)
T ss_pred HHHhhHHHHHhhCCCeeEEeecCChHHHHHHHHHHHHHHHHcCCeEEEEEEeCCCcceeeecCCCCCHHHHHHHHHHHHH
Confidence 5421 11 11223569999999999999999999999999999999999999999988877665555677889999
Q ss_pred HHHHHHhcCCeeeecCCCCcchHHHHHHhcCHHHHHHHHHHHHhcCCCCCCCCCCeeC
Q 011962 412 MVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLIP 469 (474)
Q Consensus 412 i~~~~~~~gG~~s~ehg~G~~~~~~l~~~~g~~~~~~l~~iK~~~DP~gilNPGk~~~ 469 (474)
+.+.+.++||++++|||+|+.|.+|+..++|++.++.|++||++|||+|||||||+|+
T Consensus 416 l~~~~~~~GG~is~EHGiG~~k~~~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~~ 473 (499)
T PRK11230 416 ILELCVEVGGSITGEHGVGREKINQMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNIP 473 (499)
T ss_pred HHHHHHHcCCeEeeeccCchhhHHHHHHhcCHHHHHHHHHHHHHcCCCcCCCCCeEeC
Confidence 9999999999999999999999999999999999999999999999999999999997
No 3
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=100.00 E-value=2.4e-58 Score=481.33 Aligned_cols=313 Identities=37% Similarity=0.661 Sum_probs=281.7
Q ss_pred EEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHHHHHc
Q 011962 154 IVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLE 233 (474)
Q Consensus 154 Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~~~l~ 233 (474)
||+|+|++||+++|++|+++++||+++|+|||+.|++++.+++++|||++||+|+++|+++.+|+||||+++.+|+++|.
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l~ 80 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEEGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAVE 80 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCCCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHHH
Confidence 68899999999999999999999999999999999888777899999999999988999999999999999999999999
Q ss_pred cCCCeeCCCCCC--CceecccccccccCCCccccccccceEEEEEEEecCCeEEEcccccccCcCCCchhhhhhccCCCe
Q 011962 234 PYGLFFPLDPGP--GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTL 311 (474)
Q Consensus 234 ~~Gl~~~~~~~~--~~tvGG~i~~~~~G~~s~~yG~~~d~V~~~~vVl~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~l 311 (474)
++|+.+++++++ .+||||++++|++|..+.+||.++|+|++++||++||++++++....++..||||++++.|++|+|
T Consensus 81 ~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~Gtl 160 (413)
T TIGR00387 81 EHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSEGTL 160 (413)
T ss_pred HcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCCccc
Confidence 999999887765 699999999999999999999999999999999999999998776667789999999999999999
Q ss_pred eEEEEEEEEeEecCchhH--------------------------------------------------------------
Q 011962 312 GIITEVTLRLQKIPQHSV-------------------------------------------------------------- 329 (474)
Q Consensus 312 GIIt~~tlkl~p~p~~~~-------------------------------------------------------------- 329 (474)
||||+++||++|.|+...
T Consensus 161 Giit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~a~el~d~~~~~~~~~~~~~~~p~~~~~~l~v~~~g 240 (413)
T TIGR00387 161 GIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIAAGIIPAGMEFLDNLSIKAVEDISGIGLPKDAGAILLVEIDG 240 (413)
T ss_pred eEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHhcCCCcEEEEccCHHHHHHHHHhcCCCCCCCCceEEEEEecC
Confidence 999999999999998653
Q ss_pred ------------------------------HHHHHHHHHHhcC-C-----CcccccccccccchhHHHHHHHHHHHhhcC
Q 011962 330 ------------------------------MRKEALWACFAME-P-----SFEAMISDVCVPLSCLAELISRSKKELDAS 373 (474)
Q Consensus 330 ------------------------------~~~~~~w~~~~~~-~-----~~~~~~~d~~vp~~~l~~~~~~~~~~~~~~ 373 (474)
.....+|..+... + ....+..|+++|+++++++++.+++.+.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~~~~~~~d~~vp~~~l~~~~~~~~~~~~~~ 320 (413)
T TIGR00387 241 VHEAVERDEEKIEQICRKNGAVDVQIAQDEEERALLWAGRRNAFKAASKLSPLYLIEDGTVPRSKLPEALRGIADIARKY 320 (413)
T ss_pred CcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHHHHHhHHHHHhhCCCcceeEEecCHHHHHHHHHHHHHHHHHc
Confidence 0112345543211 0 011245799999999999999999999999
Q ss_pred CCeEEEEeecCCCCeeEEEEeCCCChHHHHHHHHHHHHHHHHHHhcCCeeeecCCCCcchHHHHHHhcCHHHHHHHHHHH
Q 011962 374 PLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIK 453 (474)
Q Consensus 374 ~l~~~~~gh~~~g~~h~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~gG~~s~ehg~G~~~~~~l~~~~g~~~~~~l~~iK 453 (474)
++....+||+++|++|++++++..++++.++..++.+.+.+.+.++||++++|||+|..|.+|+.++++++.++.|++||
T Consensus 321 ~~~~~~~gH~g~g~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~is~eHG~G~~r~~~~~~~~~~~~~~~~~~iK 400 (413)
T TIGR00387 321 DFTIANFGHAGDGNLHPTILTDPEDKGEMERVEEAGGEIFELAIELGGTISGEHGIGVVKAEFMPYKFNEKELETMRAIK 400 (413)
T ss_pred CCeEEEEEEecCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeccCcHhHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999998887666666677888999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCC
Q 011962 454 VALDPNNIMNPGK 466 (474)
Q Consensus 454 ~~~DP~gilNPGk 466 (474)
+.|||+|||||||
T Consensus 401 ~~fDP~~ilNPGk 413 (413)
T TIGR00387 401 KAFDPDNILNPGK 413 (413)
T ss_pred HHcCcCcCCCCcC
Confidence 9999999999998
No 4
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1.4e-52 Score=443.51 Aligned_cols=347 Identities=39% Similarity=0.655 Sum_probs=297.6
Q ss_pred HHhhcCC-CcccChhhhhhhcCCCCCcccCCCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCCcE
Q 011962 119 LKAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGV 197 (474)
Q Consensus 119 L~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~gi 197 (474)
|.++++. .+.++...+..|..++. . ....|.+|+.|+|++||++++++|+++++||+|+|+|||+.|++.+. +||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~d~~-~--~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~gv 77 (459)
T COG0277 2 LKRILGELNVLTDPADRAAYRTDAS-V--YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-GGV 77 (459)
T ss_pred hhHhcCccceecCHHHHhhccCCcc-h--hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-CcE
Confidence 3445553 36667766766665544 2 23589999999999999999999999999999999999999999887 799
Q ss_pred EEEcCCCCCcEEeecCCCeEecCCCCcHHHHHHHHccCCCeeCCCCCC--CceecccccccccCCCccccccccceEEEE
Q 011962 198 CIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSLAVRYGTMRDNVINL 275 (474)
Q Consensus 198 vIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~~~~~~~~--~~tvGG~i~~~~~G~~s~~yG~~~d~V~~~ 275 (474)
+|||++||+|.++|+++.+++||||+++.+|.++|.++|+.+|++|++ .+||||++++|++|..+.+||.+.|+|+++
T Consensus 78 vl~l~~mn~i~~id~~~~~~~v~aGv~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l 157 (459)
T COG0277 78 VLDLSRLNRILEIDPEDGTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGL 157 (459)
T ss_pred EEEchhhcchhccCcCCCEEEEcCCccHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEE
Confidence 999999999988999999999999999999999999999999999987 599999999999999999999999999999
Q ss_pred EEEecCCeEEEcccccccCcCCCchhhhhhccCCCeeEEEEEEEEeEecCchhH-----------------HHH------
Q 011962 276 KVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSV-----------------MRK------ 332 (474)
Q Consensus 276 ~vVl~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~-----------------~~~------ 332 (474)
++|++||++++++.+..|+..||||++++.|++|+|||||++|||+.|.|+... ...
T Consensus 158 ~vV~~dG~i~~~~~~~~k~~~g~dl~~l~iGs~GtlGiit~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (459)
T COG0277 158 RVVLPDGEILRLGRKLRKDNAGYDLTALFVGSEGTLGIITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLEAL 237 (459)
T ss_pred EEEcCCceehhhcCcccCCCCCCCHHHhcccCCccceEEEEEEEEeccCCchheEEEEeCCCHHHHHHHHHHHHHhhhhc
Confidence 999999999999888778889999999999999999999999999999886544 000
Q ss_pred ---------------------------------------------------------------------------HHHHH
Q 011962 333 ---------------------------------------------------------------------------EALWA 337 (474)
Q Consensus 333 ---------------------------------------------------------------------------~~~w~ 337 (474)
..+|.
T Consensus 238 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (459)
T COG0277 238 GVIPAALEFMDRPIKAAEAYLGGGALPLEAPARLLVEVEGSDEAAVDEALEALGELLLEHGLARDLVVAQDLAEAARLWL 317 (459)
T ss_pred CCCceeeeecchhHHHHHHhccccCCCCCCceEEEEEEcCCcHHHHHHHHHHHHHHHHhcCCceeEEEeCCHHHHHHHHH
Confidence 00111
Q ss_pred HHhcC------CCcccccccccccchhHHHHHHHHHHHhhcCC--CeEEEEeecCCCCeeEEEEeCCCC-hHHHHHHHHH
Q 011962 338 CFAME------PSFEAMISDVCVPLSCLAELISRSKKELDASP--LICTVIAHAGDGNFHTVILFDPSK-EEDRQEAERL 408 (474)
Q Consensus 338 ~~~~~------~~~~~~~~d~~vp~~~l~~~~~~~~~~~~~~~--l~~~~~gh~~~g~~h~~~~~~~~~-~~~~~~~~~l 408 (474)
.+... .....+..|+++|.+.+++++..+.+.+.+.+ +....++|.+++|+|.++..+..+ .+......++
T Consensus 318 ~r~~~~~~~~~~~~~~~~~d~~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 397 (459)
T COG0277 318 ARKGALAAAGALGPGVIQEDVVVPLEALPEFLREILALLDKAGLALRVALFGHAGDGNLHLNILYDVGDEAEELARAEAL 397 (459)
T ss_pred HHHHHHHHHHhhCCCccccceeeeHHHHHHHHHHHHHHHHhcCCCceeeeecccCCCcceeeeccCCCccHHHHHHHHHH
Confidence 00000 00002345889999999999999999999886 889999999999999999877653 3445667788
Q ss_pred HHHHHHHHHhcCCeeeecCCCCcchHHHHHHhcCHHHHHHHHHHHHhcCCCCCCCCCCeeCC
Q 011962 409 NRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLIPP 470 (474)
Q Consensus 409 ~~~i~~~~~~~gG~~s~ehg~G~~~~~~l~~~~g~~~~~~l~~iK~~~DP~gilNPGk~~~~ 470 (474)
.+.+.+.+.+++|++++|||+|..+.+|+..+.+ +.++.|+++|++|||+|||||||+++.
T Consensus 398 ~~~i~~~~~~~gG~~~~~h~~g~~~~~~~~~~~~-~~~~~~~~~k~~~DP~~i~npg~~~~~ 458 (459)
T COG0277 398 NEAIEALAVELGGSISGEHGIGRTKAEFLELEPG-EAWALLRAIKRAFDPNGIFNPGKLFRL 458 (459)
T ss_pred HHHHHHHHHHhCCeeEEecccchhhHHHHHHHHh-HHHHHHHHHHHhcCCCCCCCCCccCCC
Confidence 8889999999999999999999999999999998 899999999999999999999999874
No 5
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=1.6e-52 Score=409.19 Aligned_cols=359 Identities=30% Similarity=0.476 Sum_probs=317.1
Q ss_pred ecCCCCCCCHHHHHHHHhhcCC-CcccChhhhhhhcCCCCCcccCCCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcC
Q 011962 104 VKGSHKEIPQELVDELKAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGG 182 (474)
Q Consensus 104 ~~~~~~~~~~~~~~~L~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~Gg 182 (474)
+.+.++.++++.+..++.+++. .+.+++++...|..+| +.+..+.-..|+.|+|++||++|+++|++.++.|+|+||
T Consensus 44 R~p~fa~l~~~Dl~~Fk~iLg~d~~~~~~edL~~~n~dw--m~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGG 121 (511)
T KOG1232|consen 44 RNPNFAKLDSKDLAYFKSILGKDEVSTDKEDLENFNTDW--MKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGG 121 (511)
T ss_pred cCCCcccccHHHHHHHHHHhcccccccChHHHhhhhhHH--HHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCC
Confidence 3446778888889999999986 5778777777665553 445557889999999999999999999999999999999
Q ss_pred CCCCCCCCcCCCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHHHHHccCCCeeCCCCCC--CceecccccccccCC
Q 011962 183 ATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGS 260 (474)
Q Consensus 183 G~s~~g~~~~~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~~~~~~~~--~~tvGG~i~~~~~G~ 260 (474)
.+++.|++++.-+.|||+|.+||+|..+|+..+.+++++|+.+.++..+|.++|+.+|.+.+. .+.|||.++||++|.
T Consensus 122 NTgLVGgSVPvfDEiVlsl~~mNKi~sfDevsGil~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGl 201 (511)
T KOG1232|consen 122 NTGLVGGSVPVFDEIVLSLGLMNKILSFDEVSGILKCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGL 201 (511)
T ss_pred CcccccCcccchHHHhhhhhhhccccccccccceEEeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCce
Confidence 999999999988899999999999999999999999999999999999999999999998886 699999999999999
Q ss_pred CccccccccceEEEEEEEecCCeEEEcccccccCcCCCchhhhhhccCCCeeEEEEEEEEeEecCchhH-----------
Q 011962 261 LAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSV----------- 329 (474)
Q Consensus 261 ~s~~yG~~~d~V~~~~vVl~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~----------- 329 (474)
.-.+||...-+|+++|+|+|+|+++.....-+|+++|||+.++|+|++|++||||.+++-+.|.|...-
T Consensus 202 rllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~~~kpksvn~af~gi~sf~~ 281 (511)
T KOG1232|consen 202 RLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILAPPKPKSVNVAFIGIESFDD 281 (511)
T ss_pred EEEEecccccceeeeEEEcCCCchhhhhhhhcccCccccchhheecCCceeeEEeeEEEeecCCCcceeEEEEccccHHH
Confidence 999999999999999999999999998888899999999999999999999999999999999887543
Q ss_pred --------------------------------------------------------------------------------
Q 011962 330 -------------------------------------------------------------------------------- 329 (474)
Q Consensus 330 -------------------------------------------------------------------------------- 329 (474)
T Consensus 282 v~k~fv~Aks~L~EILSafElmD~~s~~~~~~~l~~l~~pl~~~~pFyiLiETsGSn~dhD~eKl~afl~d~lek~lIsD 361 (511)
T KOG1232|consen 282 VQKVFVEAKSNLTEILSAFELMDNASMELVLEYLKDLHFPLEDEHPFYILIETSGSNKDHDEEKLTAFLEDCLEKGLISD 361 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhccCCCCccCCCceEEEEEecCCCccccHHHHHHHHHHhhhhccccc
Confidence
Q ss_pred -------HHHHHHHHHHhcCCC-----cccccccccccchhHHHHHHHHHHHhhcCCCeE--EEEeecCCCCeeEEEEeC
Q 011962 330 -------MRKEALWACFAMEPS-----FEAMISDVCVPLSCLAELISRSKKELDASPLIC--TVIAHAGDGNFHTVILFD 395 (474)
Q Consensus 330 -------~~~~~~w~~~~~~~~-----~~~~~~d~~vp~~~l~~~~~~~~~~~~~~~l~~--~~~gh~~~g~~h~~~~~~ 395 (474)
.+...+|..+..-|. ..-+..|++.|++.+.++.+.+++.+...++.. +-|||.||||+|+|+...
T Consensus 362 Gv~a~d~~~~~~lW~~Re~ip~a~~~~g~vyKyDvSLpL~d~Y~lvn~~~eRl~~~~l~~d~~gyGHlGDgNlHLNia~~ 441 (511)
T KOG1232|consen 362 GVLAQDEAEAQKLWKIRESIPEALQKAGGVYKYDVSLPLEDLYNLVNVMKERLGEAALVGDIVGYGHLGDGNLHLNIAVR 441 (511)
T ss_pred ceecCCHHHHHHHHHHHhccHHHHHhcCCEEEeeccccHHHHHHHHHHHHHhhhhhhhhhcccccccccCCceeEeeeHH
Confidence 233467887765553 234678999999999999999999888766544 669999999999999754
Q ss_pred CCChHHHHHH-HHHHHHHHHHHHhcCCeeeecCCCCcchHHHHHHhcCHHHHHHHHHHHHhcCCCCCCCCCCee
Q 011962 396 PSKEEDRQEA-ERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLI 468 (474)
Q Consensus 396 ~~~~~~~~~~-~~l~~~i~~~~~~~gG~~s~ehg~G~~~~~~l~~~~g~~~~~~l~~iK~~~DP~gilNPGk~~ 468 (474)
.-+ .++ +.+..+++|.+.++.|++++|||+|..|++|+-+...++.+..|+.||+.|||+|||||.|.+
T Consensus 442 efn----~~iek~lePfvYE~vs~~~GSISAEHGiG~lKk~~~~ysKspe~i~lmk~lKn~~DPngILnPYK~i 511 (511)
T KOG1232|consen 442 EFN----KEIEKLLEPFVYEWVSKHKGSISAEHGIGFLKKPYLHYSKSPEEILLMKDLKNLFDPNGILNPYKYI 511 (511)
T ss_pred HHh----HHHHHhhhhHHHHHHHhcCCceeccccccccccCccccCCCHHHHHHHHHHHhhcCCcccCCccccC
Confidence 222 333 445678899999999999999999999999999999999999999999999999999999964
No 6
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=4.1e-51 Score=408.47 Aligned_cols=316 Identities=37% Similarity=0.596 Sum_probs=270.0
Q ss_pred CCCCCCEEEEcCCHHHHHHHHHHhhcC--CCcEEEEcCCCCCCCCCcCCCCcEEEEcC---CCCCcEEeecCCCeEecCC
Q 011962 147 AVNIPDIIVFPRSEDEVSKIVKCCDKH--KVPIIPYGGATSIEGHTLSPNGGVCIDLS---LMKSVKALHIEDMDVVVEP 221 (474)
Q Consensus 147 ~~~~P~~Vv~P~s~eeV~~iv~~a~~~--~~~v~~~GgG~s~~g~~~~~~~givIdl~---~m~~i~~id~~~~~v~V~a 221 (474)
....|.+|+.|.|+|||++++|.|+.+ .+||.+||+|||+.|++++..+|++|.|+ .|+++..++.++.+|.|+|
T Consensus 60 ~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~~GvvV~m~~~~~~~~~~~~~~~~~yvdV~~ 139 (505)
T KOG1231|consen 60 TQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATRGGVVVCMDSSLLMKDVPVLVVDDLYVDVSA 139 (505)
T ss_pred CCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccCCCCeEEEEehhhccCCCceeecccceEEeeC
Confidence 345899999999999999999999999 99999999999999999997889665553 5677766788889999999
Q ss_pred CCcHHHHHHHHccCCC--eeCCCCCCCceecccccccccCCCccccccccceEEEEEEEecCCeEEEcccccccCcCCCc
Q 011962 222 GIGWMELNEYLEPYGL--FFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYD 299 (474)
Q Consensus 222 Gv~~~~L~~~l~~~Gl--~~~~~~~~~~tvGG~i~~~~~G~~s~~yG~~~d~V~~~~vVl~dG~i~~~~~~~~~~~~g~d 299 (474)
|..|-||++++.++|| .++.+++. .||||++++.|+|.++.+||.+.+||++++||+++||+++|..+ .|++
T Consensus 140 g~~Widll~~t~e~GL~p~swtDyl~-ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r-----~n~~ 213 (505)
T KOG1231|consen 140 GTLWIDLLDYTLEYGLSPFSWTDYLP-LTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKR-----ANSN 213 (505)
T ss_pred ChhHHHHHHHHHHcCCCccCcCCccc-eeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccc-----cCce
Confidence 9999999999999999 57888887 99999999999999999999999999999999999999999665 7899
Q ss_pred hhhhhhccCCCeeEEEEEEEEeEecC---chhH-----------------------------------------------
Q 011962 300 LTRLIIGSEGTLGIITEVTLRLQKIP---QHSV----------------------------------------------- 329 (474)
Q Consensus 300 l~~~~~Gs~G~lGIIt~~tlkl~p~p---~~~~----------------------------------------------- 329 (474)
||.++.|++|+|||||+++++|+|.| +...
T Consensus 214 lf~~vlGglGqfGIITrArI~le~aP~~dQe~lis~~~~fd~veg~~~~~~~gl~~n~r~s~f~l~D~~~i~~~~~~~~~ 293 (505)
T KOG1231|consen 214 LFFLVLGGLGQFGIITRARIKLEPAPKRDQERLISVCGSFDTVEGAAIVARNGLQSNIRVSRFELLDEVQIAAINSDHST 293 (505)
T ss_pred eeeeeeccCcceeeEEEEEEEeccCCccchHHhhhhhcCCcchhhhhhhhhccccccceeeccccCcHHHHHHHHhcCCe
Confidence 99999999999999999999999999 3332
Q ss_pred --------------------------------------------------------HHHHHHHHH------HhcCCC---
Q 011962 330 --------------------------------------------------------MRKEALWAC------FAMEPS--- 344 (474)
Q Consensus 330 --------------------------------------------------------~~~~~~w~~------~~~~~~--- 344 (474)
.++..+|.. ....+.
T Consensus 294 ~yclev~ky~d~~e~pti~~e~~~l~~~l~~~~~~~~~~~v~y~~fldrv~~ae~klrskgLWevphpWlnL~vpks~i~ 373 (505)
T KOG1231|consen 294 NYCLEVAKYYDLTEAPTLFQEIGGLSEKLNYAPTFIVEQDVQYHDFLDRVHFAEDKLRSKGLWEVPHPWLNLAVPKSRIS 373 (505)
T ss_pred eeeeehhhccCcccCchHHHHHhccchhhhccchhhhhhhhHHHHhhhHhhhcccchhhcccccCCCchheeecccccch
Confidence 111122322 111111
Q ss_pred --cccccccccccchhHHHHHHHHHHHhhcCCCeEEEEeecCCCCeeEEEEeCCCChHHHHHHHHHHHHHHHHHHhcCCe
Q 011962 345 --FEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGT 422 (474)
Q Consensus 345 --~~~~~~d~~vp~~~l~~~~~~~~~~~~~~~l~~~~~gh~~~g~~h~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~gG~ 422 (474)
...++.|+++|.++.+.++-..++.++-......+.+|++++++|+..++.+..+++.++++++.++|.+.++++ |+
T Consensus 374 ~fa~gv~~dIl~~~s~g~~liyptnk~~kw~~~~sav~ph~~e~vFy~v~~l~s~~~~~~e~~~~~n~riv~fc~~a-g~ 452 (505)
T KOG1231|consen 374 DFARGVFTDILVPNSSGPVLIYPTNKDLKWSNRLSAVTPHAGEGVFYLVILLRSSGKEEHEELEQLNDRIVKFCLAA-GT 452 (505)
T ss_pred hhhhhhccceeeccCCCceEEeccccCcchhhhhccccccCCCceEEEEEEecCCCchhHHHHHHHHHHHHHHHHHc-Cc
Confidence 123466777777777777666666666666778889999999999999999888888899999999999999999 99
Q ss_pred eeecCCCCcchHHHHHHhcCHHHHHHHHHHHHhcCCCCCCCCCCeeCC
Q 011962 423 CTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKLIPP 470 (474)
Q Consensus 423 ~s~ehg~G~~~~~~l~~~~g~~~~~~l~~iK~~~DP~gilNPGk~~~~ 470 (474)
+.+||+.|+++++|+.+++|+ .+..|.++|.+|||+.||||||.|+.
T Consensus 453 ~~keyl~~~~~~e~w~~hfG~-~w~~f~~~K~~~DPk~Il~PGq~Ifq 499 (505)
T KOG1231|consen 453 CTKEYLPHYGKREYWVEHFGE-KWVDFMRIKKAYDPKRILNPGQRIFQ 499 (505)
T ss_pred ChhhhcCCcccHHHHHHHhCh-hHHHHHHHHhhcCHHHhcCCcccccc
Confidence 999999999999999999996 55555559999999999999999973
No 7
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=4.6e-40 Score=347.57 Aligned_cols=333 Identities=21% Similarity=0.283 Sum_probs=247.4
Q ss_pred cCCCcccChhhhhhhcCCCCCcccCCCCCCEEEEcCCHHHHHHHHHHhh--cCCCcEEEEcCCCCCCCCCcCCCCcEEEE
Q 011962 123 CQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCD--KHKVPIIPYGGATSIEGHTLSPNGGVCID 200 (474)
Q Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~--~~~~~v~~~GgG~s~~g~~~~~~~givId 200 (474)
+++++.+++.+...|++++..... ..|.+|++|+|++||+++|++|+ +++++|++||+|||+.|++.. ++|++||
T Consensus 39 ~~~~v~~d~~~~~~~s~d~g~~~~--~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~-~~GivId 115 (525)
T PLN02441 39 LDGHLSFDPVSTASASKDFGNLVH--SLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQA-PGGVVVD 115 (525)
T ss_pred cCceEEeCHHHHHHHhcCcccccC--CCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccC-CCeEEEE
Confidence 446777887777777777665544 48999999999999999999997 679999999999999988876 4799999
Q ss_pred cCCCCC------cEEeecCCCeEecCCCCcHHHHHHHHccCCCeeCCCCCC-CceecccccccccCCCccccccccceEE
Q 011962 201 LSLMKS------VKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLAVRYGTMRDNVI 273 (474)
Q Consensus 201 l~~m~~------i~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~~~~~~~~-~~tvGG~i~~~~~G~~s~~yG~~~d~V~ 273 (474)
|++||+ ++++|.+..+|+|++|++|.++.+++.++|++.+..+.. ..||||+++++|+|..+.+||.+.|+|+
T Consensus 116 ms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~GlaP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl 195 (525)
T PLN02441 116 MRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVL 195 (525)
T ss_pred CCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCccCCccccCceEEeEEcCCCCccccccccCcHHHhEE
Confidence 999999 677888999999999999999999999999875544433 6999999999998888999999999999
Q ss_pred EEEEEecCCeEEEcccccccCcCCCchhhhhhccCCCeeEEEEEEEEeEecCchhH-------------------HH---
Q 011962 274 NLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSV-------------------MR--- 331 (474)
Q Consensus 274 ~~~vVl~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~-------------------~~--- 331 (474)
+++||+++|++++++.. .++||||+++|++|+|||||++|||++|.|+... ++
T Consensus 196 ~leVVtadGevv~~s~~-----~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~li~~~~ 270 (525)
T PLN02441 196 ELDVVTGKGEVVTCSPT-----QNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERLISRPP 270 (525)
T ss_pred EEEEEeCCceEEEeCCC-----CChhHHHhhccCCCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHHHhcCC
Confidence 99999999999998643 5689999999999999999999999999998432 00
Q ss_pred -----------------HHHHH------------------------------------------------HHHhcCC---
Q 011962 332 -----------------KEALW------------------------------------------------ACFAMEP--- 343 (474)
Q Consensus 332 -----------------~~~~w------------------------------------------------~~~~~~~--- 343 (474)
....| ......+
T Consensus 271 ~~~~d~veg~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~le~~~~~~~~~~~~~~~~~~~ll~~L~~~~~~~ 350 (525)
T PLN02441 271 ENSFDYVEGFVIVNRNGLINNWRSSFFSPSDPVRASSLPSDGGVLYCLEVAKYYDEDTSDTVDQEVESLLKRLSFIPGLL 350 (525)
T ss_pred CCCcceEeEEEEeCCCCceeeeecccCCccccchhhccccCCceEEEEEEEEeeCCCCccchhhHHHHHHhhcCCCCCCc
Confidence 00001 0000000
Q ss_pred ---------------------------CcccccccccccchhHHHHHHHHHHHhhcCCCeE--EEE----eec-------
Q 011962 344 ---------------------------SFEAMISDVCVPLSCLAELISRSKKELDASPLIC--TVI----AHA------- 383 (474)
Q Consensus 344 ---------------------------~~~~~~~d~~vp~~~l~~~~~~~~~~~~~~~l~~--~~~----gh~------- 383 (474)
....-+.++.+|.+++.+|.+.+-+.+-.....+ .+| ...
T Consensus 351 ~~~d~~y~~fl~rv~~~e~~lr~~G~W~~phPWlnlfvp~s~i~~f~~~v~~~i~~~~~~G~~liyP~~~~~~~~~~s~~ 430 (525)
T PLN02441 351 FTTDVSYVDFLDRVHVEELKLRSKGLWEVPHPWLNLFVPKSRIADFDDGVFKGILLDGTNGPILVYPLNRSKWDNRTSAV 430 (525)
T ss_pred eecccCHHHHHHhhhhHHHHHhhcCCcCCCCchhheeCcHHHHHHHHHHHHhhcccccCCCeEEEEecccccCCCCCccc
Confidence 0012245678899999998888766554332212 222 000
Q ss_pred -CCCC-eeEEEEeCCCC--hHHHHHHHHHHHHHHHHHHhcCC--eeeecCCCCcchHHHHHHhcCHHHHHHHHHHHHhcC
Q 011962 384 -GDGN-FHTVILFDPSK--EEDRQEAERLNRFMVHTALSMEG--TCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALD 457 (474)
Q Consensus 384 -~~g~-~h~~~~~~~~~--~~~~~~~~~l~~~i~~~~~~~gG--~~s~ehg~G~~~~~~l~~~~g~~~~~~l~~iK~~~D 457 (474)
-+.. ++++-+..... ....++..+.++++.+.+.+.|+ .-+-.|- ....+ ..+.|| ..+++|.+.|++||
T Consensus 431 ~P~~~~~y~v~~l~~~~p~~~~~~~~~~~n~~i~~~~~~~g~~~k~Yl~~~--~~~~~-W~~HfG-~~w~~f~~~K~~yD 506 (525)
T PLN02441 431 IPDEDIFYLVALLRSALPSGDDLEHLLAQNKEILRFCEKAGIGVKQYLPHY--TTQEE-WKRHFG-PKWETFVRRKAKFD 506 (525)
T ss_pred cCCCCeEEEEEEcCCCCCCcccHHHHHHHHHHHHHHHHHcCCceEEcCCCC--CCHHH-HHHHhc-chHHHHHHHHhhCC
Confidence 1122 33222222221 22456677778888888888777 3333333 22344 478889 58999999999999
Q ss_pred CCCCCCCCCe
Q 011962 458 PNNIMNPGKL 467 (474)
Q Consensus 458 P~gilNPGk~ 467 (474)
|++||+||.-
T Consensus 507 P~~iL~pgq~ 516 (525)
T PLN02441 507 PLAILSPGQR 516 (525)
T ss_pred chhhcCCCCc
Confidence 9999999943
No 8
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-40 Score=345.22 Aligned_cols=332 Identities=20% Similarity=0.260 Sum_probs=267.3
Q ss_pred HHHHHHHHhhcCC-CcccChhhhhhhcCCCCCcccCCCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCc
Q 011962 113 QELVDELKAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191 (474)
Q Consensus 113 ~~~~~~L~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~ 191 (474)
++++++|++++|. +|.+++..+..|.+++.. ..+.|.+||+|.|++||++||++|+++++||+++||||++.|+++
T Consensus 3 ~~li~~L~~IvG~~~Vltd~~~l~~Y~~D~r~---~~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAv 79 (564)
T PRK11183 3 KALINELTRIVGSSHVLTDPAKTERYRKGFRS---GQGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGST 79 (564)
T ss_pred HHHHHHHHHhcCcccEecCHHHHHHhccCccc---cCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcc
Confidence 4678999999985 699999888888777432 235899999999999999999999999999999999999999999
Q ss_pred CCCC-----cEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHHHHHccCCCeeCCCCC---CCceecccccccccCCCcc
Q 011962 192 SPNG-----GVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPG---PGATIGGMCATRCSGSLAV 263 (474)
Q Consensus 192 ~~~~-----givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~~~~~~~---~~~tvGG~i~~~~~G~~s~ 263 (474)
+..+ +|+|||.+||+|.+|| ++.+++|+||+++.+|+++|+++|+.++.+++ +.+||||++++|++|....
T Consensus 80 P~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePGVtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vl 158 (564)
T PRK11183 80 PNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPGTTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQ 158 (564)
T ss_pred cCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCCcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhhe
Confidence 8643 7999999999999999 66889999999999999999999998776543 3589999999999999999
Q ss_pred ccccccceEEEEEEEecCCeE-------EEcccccc--c---CcCCC---------------------------------
Q 011962 264 RYGTMRDNVINLKVVLANGDV-------VKTASRAR--K---SAAGY--------------------------------- 298 (474)
Q Consensus 264 ~yG~~~d~V~~~~vVl~dG~i-------~~~~~~~~--~---~~~g~--------------------------------- 298 (474)
+||.+.++++. ++|+++|++ ++.+...+ . .+.||
T Consensus 159 Rgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfn 237 (564)
T PRK11183 159 RGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFN 237 (564)
T ss_pred Ecchhhhhhhh-hEECCCCcEEEeeccCcccCCCHHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCccccc
Confidence 99999999999 999999999 66655442 1 34677
Q ss_pred -chhhhh--hccCCCeeEEEEEEEEeEecCchhH----------------------------------------------
Q 011962 299 -DLTRLI--IGSEGTLGIITEVTLRLQKIPQHSV---------------------------------------------- 329 (474)
Q Consensus 299 -dl~~~~--~Gs~G~lGIIt~~tlkl~p~p~~~~---------------------------------------------- 329 (474)
|+..++ .||+|+|||| +++|+++|.|+...
T Consensus 238 aDl~~LfeasGseGkLgV~-avrLdtfp~p~~~~vf~ig~n~~~~~~~~rr~il~~~~~lP~a~Eym~r~~~d~~~~ygk 316 (564)
T PRK11183 238 ADPRRLFEASGCAGKLAVF-AVRLDTFPAEKNTQVFYIGTNDPAVLTEIRRHILANFKNLPVAGEYMHRDAFDIAEKYGK 316 (564)
T ss_pred CCHHHHhhccCCCceEEEE-EEEeccccCCCcceEEEEeCCCHHHHHHHHHHHHHhCCCCceeEeecCHHHHHHHHHhCC
Confidence 999999 9999999999 99999999987654
Q ss_pred -----------------------------------------------------------------------------HHH
Q 011962 330 -----------------------------------------------------------------------------MRK 332 (474)
Q Consensus 330 -----------------------------------------------------------------------------~~~ 332 (474)
+..
T Consensus 317 d~~~~i~~~gt~~~p~~f~~k~~~d~~~~~~~~~~~~~~d~~~q~~~~~~p~~lp~r~~~~r~~y~hhl~lk~~~~~~~e 396 (564)
T PRK11183 317 DTFLMIDKLGTDKLPKLFALKGRVDAFLEKVPFLPPHFTDRVMQALSKLFPSHLPKRMKDYRDKYEHHLLLKMSGDGIEE 396 (564)
T ss_pred ccEEehhhhCchhHHHHHhhHHHHHHHHHhcCCCCCCCcHHHHHHHHhhChhhcCHHHHHHHHHhhhheeeeecCccHHH
Confidence 000
Q ss_pred -----HHHHHH--------------------H-----------hcCCCcc-cccccccccchhHHHHHHHHHHHhhcCCC
Q 011962 333 -----EALWAC--------------------F-----------AMEPSFE-AMISDVCVPLSCLAELISRSKKELDASPL 375 (474)
Q Consensus 333 -----~~~w~~--------------------~-----------~~~~~~~-~~~~d~~vp~~~l~~~~~~~~~~~~~~~l 375 (474)
..+|.. + ....+.+ -+..|++.+.+. .++++.+.+.++..-+
T Consensus 397 ~~~~l~~~f~~~~g~~f~c~~~e~~~a~lhrf~~a~aa~ry~~~~~~~~~~i~~ldial~rn~-~~w~e~lp~~~~~~~~ 475 (564)
T PRK11183 397 ARAYLKEYFKSAEGDFFECTPEEGKKAFLHRFAAAGAAIRYRAVHRDEVEDILALDIALRRND-RDWFEHLPPEIDDQLV 475 (564)
T ss_pred HHHHHHHHhhhcCCCeEeeCHHHHHHHHHHHHHhhhhHHHHHHhhhccccceeeEEeeecCCc-cchHHhCCHHHhhhhh
Confidence 000000 0 0000111 125677777777 7788888888888777
Q ss_pred eEEEEeecCCCCeeEEEEeCCCChHHHHHHHHHHHHHHHHHHhcCCeeeecCCCCcchHHHHHHhcCHHHHHHHHHHHHh
Q 011962 376 ICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVA 455 (474)
Q Consensus 376 ~~~~~gh~~~g~~h~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~gG~~s~ehg~G~~~~~~l~~~~g~~~~~~l~~iK~~ 455 (474)
.-+.|||+...-+|.-+++..+. +.+++.++|.+..-+.|..+.+||.+|-. | .+-..|++.-++
T Consensus 476 ~~~yyghf~chv~hqdyi~kkg~-----d~~~~~~~m~~~l~~rga~ypaehnvghl---y-------~a~~~l~~~y~~ 540 (564)
T PRK11183 476 HKLYYGHFFCHVFHQDYIVKKGV-----DVHALKHEMLELLDARGAEYPAEHNVGHL---Y-------KAKPALKKFYRE 540 (564)
T ss_pred hheeccccceecchhhhhhccCC-----CHHHHHHHHHHHHHhcCCcCCcccccCcc---c-------cCChHHHHHHHh
Confidence 88889999999999888876542 23556777777778889999999999974 1 233567777899
Q ss_pred cCCCCCCCCCC
Q 011962 456 LDPNNIMNPGK 466 (474)
Q Consensus 456 ~DP~gilNPGk 466 (474)
+||.|-||||-
T Consensus 541 ~dptn~~npgi 551 (564)
T PRK11183 541 LDPTNSFNPGI 551 (564)
T ss_pred cCCccCCCCcc
Confidence 99999999994
No 9
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=100.00 E-value=1.2e-39 Score=330.73 Aligned_cols=168 Identities=27% Similarity=0.475 Sum_probs=152.9
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEcCCCC-CCCCCcCCCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHHHHHccCCC
Q 011962 159 SEDEVSKIVKCCDKHKVPIIPYGGATS-IEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGL 237 (474)
Q Consensus 159 s~eeV~~iv~~a~~~~~~v~~~GgG~s-~~g~~~~~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl 237 (474)
.++||+++|++|+++++||+++|+||+ ..|. +. ++++|||++||+|+++|+++.+|+|+||+++.||+++|.++|+
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~--~~-~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G~ 79 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGR--AL-AGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAGQ 79 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCC--CC-CCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcCC
Confidence 479999999999999999999999975 4444 22 4689999999999999999999999999999999999999999
Q ss_pred eeCCCCC---CCceecccccccccCCCccccccccceEEEEEEEecCCeEEEcccccccCcCCCchhhhhhccCCCeeEE
Q 011962 238 FFPLDPG---PGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGII 314 (474)
Q Consensus 238 ~~~~~~~---~~~tvGG~i~~~~~G~~s~~yG~~~d~V~~~~vVl~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGII 314 (474)
.+++.+. ..+||||++++|++|+.+.+||.++|+|+++++|++||++++++.+..|+..||||+++++|++|+||||
T Consensus 80 ~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~GtLGVi 159 (352)
T PRK11282 80 MLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSLGTLGVL 159 (352)
T ss_pred eeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCCchhhhh
Confidence 9887653 3489999999999999999999999999999999999999999876667889999999999999999999
Q ss_pred EEEEEEeEecCchhH
Q 011962 315 TEVTLRLQKIPQHSV 329 (474)
Q Consensus 315 t~~tlkl~p~p~~~~ 329 (474)
|++|||++|.|+...
T Consensus 160 tevtlkl~P~p~~~~ 174 (352)
T PRK11282 160 LEVSLKVLPRPRAEL 174 (352)
T ss_pred eEEEEEEEecCceEE
Confidence 999999999997643
No 10
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=100.00 E-value=1.2e-37 Score=305.45 Aligned_cols=354 Identities=28% Similarity=0.438 Sum_probs=267.7
Q ss_pred CCCHHHHHHHHhhcCCCcccC--hhhhhh--hcCCCC-----CcccCCCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEE
Q 011962 110 EIPQELVDELKAICQDDMTMD--YEERYI--HGKPQN-----SFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPY 180 (474)
Q Consensus 110 ~~~~~~~~~L~~~~~~~v~~~--~~~~~~--~~~~~~-----~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~ 180 (474)
-.+++++.+|++ .++... ..+++. ||...+ .-.++...|+.||.|+..+||.+||+.|.+|++-++|.
T Consensus 114 VeNedflh~Lke---t~isyS~Ea~dRl~R~HGhtlhdi~~Lregkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPi 190 (613)
T KOG1233|consen 114 VENEDFLHFLKE---TKISYSNEARDRLMRGHGHTLHDIINLREGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPI 190 (613)
T ss_pred ccchHHHHHHHh---ccCccchhHHHHHHhhcCchHHHHHHHhcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEe
Confidence 346788888885 233322 222332 222111 11234468999999999999999999999999999999
Q ss_pred cCCCCCCCCCcCCCC----cEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHHHHHccCCCeeCCCCCC--Cceeccccc
Q 011962 181 GGATSIEGHTLSPNG----GVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP--GATIGGMCA 254 (474)
Q Consensus 181 GgG~s~~g~~~~~~~----givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~~~~~~~~--~~tvGG~i~ 254 (474)
|||+|.++....+.+ =+.+|++.||+|+.+|.++.++.+|+|+...+|.+.|.+.|+...+.|.+ -.|+|||++
T Consensus 191 GGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVs 270 (613)
T KOG1233|consen 191 GGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCRAEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVS 270 (613)
T ss_pred CCcccccccccCCcccceeEEEecHHhhhheeEeccccceEEEecCcchHHHHHHHhhcCcccCCCCCceeeecccceee
Confidence 999999766655433 25589999999999999999999999999999999999999998877765 599999999
Q ss_pred ccccCCCccccccccceEEEEEEEecCCeEEEcccccccCcCCCchhhhhhccCCCeeEEEEEEEEeEecCchhH-----
Q 011962 255 TRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSV----- 329 (474)
Q Consensus 255 ~~~~G~~s~~yG~~~d~V~~~~vVl~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~----- 329 (474)
+.+.|+--..||.+.|.|+.+++|+|.|.+.+-... ...+.|||+.+.+.||+|+||||||+|+|++|+|+...
T Consensus 271 TRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~-PRmS~GPDihh~IlGSEGTLGVitEvtiKirPiPe~~ryGS~a 349 (613)
T KOG1233|consen 271 TRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQV-PRMSSGPDIHHIILGSEGTLGVITEVTIKIRPIPEVKRYGSFA 349 (613)
T ss_pred eccccccccccCChhHheEEEEeecCcchhhhhhcC-CcccCCCCcceEEeccCcceeEEEEEEEEEeechhhhhcCccc
Confidence 999999999999999999999999999988765443 34568999999999999999999999999999998765
Q ss_pred ---------------------------------------HHHHHHHHHH-------------------------------
Q 011962 330 ---------------------------------------MRKEALWACF------------------------------- 339 (474)
Q Consensus 330 ---------------------------------------~~~~~~w~~~------------------------------- 339 (474)
.....+|...
T Consensus 350 FPNFEqGV~f~REvA~qRCqPAS~RLMDN~QF~fGqALKp~~~Swwas~~d~~kk~YiTswKGfd~nqicaATllfEGdr 429 (613)
T KOG1233|consen 350 FPNFEQGVNFFREVAIQRCQPASLRLMDNDQFVFGQALKPASDSWWASLKDSVKKMYITSWKGFDVNQICAATLLFEGDR 429 (613)
T ss_pred cCcHHHHHHHHHHHHHHhcCchheeeecccceecccccCcchhhHHHHHHHHHhhheeecccCcCHhhhhhhhheecccH
Confidence 0011122210
Q ss_pred --------------hcC---C--------------------------CcccccccccccchhHHHHHHHHHHHhh----c
Q 011962 340 --------------AME---P--------------------------SFEAMISDVCVPLSCLAELISRSKKELD----A 372 (474)
Q Consensus 340 --------------~~~---~--------------------------~~~~~~~d~~vp~~~l~~~~~~~~~~~~----~ 372 (474)
... + ....-..+.++|+++...+.+.+++.+. +
T Consensus 430 e~V~qhE~~~y~iAekF~G~~aG~~NGqrGY~LTfvIAYiRDlgl~~gvlgESFETSvPWDrv~~LCRnVKer~~rEck~ 509 (613)
T KOG1233|consen 430 EEVDQHEERLYKIAEKFHGVVAGAENGQRGYRLTFVIAYIRDLGLNHGVLGESFETSVPWDRVLSLCRNVKERMKRECKA 509 (613)
T ss_pred HHHHHHHHHHHHHHHHhCCccccccccccceEEEEeHHHHHhhcccccchhhcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 000 0 0001134568999999988887766553 2
Q ss_pred CCCeEEE--------EeecCCCCeeEEEEeCCCChHHH-HHHHHHHHHHHHHHHhcCCeeeecCCCCcchHHHHHHhcCH
Q 011962 373 SPLICTV--------IAHAGDGNFHTVILFDPSKEEDR-QEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELGT 443 (474)
Q Consensus 373 ~~l~~~~--------~gh~~~g~~h~~~~~~~~~~~~~-~~~~~l~~~i~~~~~~~gG~~s~ehg~G~~~~~~l~~~~g~ 443 (474)
.++.... .-.+| ..+++.|.||..+-.+. +-.+++.....+.+++.||+++++||+|..++.|+....+.
T Consensus 510 ~gv~~~~~s~CRVTQtYDAG-ACiYFYFgFn~rg~~dplevfe~iE~aARdEIlacGGSlSHHHGVGKiRkqW~~~~~~~ 588 (613)
T KOG1233|consen 510 QGVTHPVLSNCRVTQTYDAG-ACIYFYFGFNARGLKDPLEVFERIETAARDEILACGGSLSHHHGVGKIRKQWMLTTNGA 588 (613)
T ss_pred cCCCcccccceeEEEEecCc-eEEEEEEeeccccCCchHHHHHHHHHHhHHHHHhcCCcccccccchHHHHHHHHhhhhh
Confidence 3332222 22222 34666677775432222 23344555567789999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCee
Q 011962 444 GALETMKRIKVALDPNNIMNPGKLI 468 (474)
Q Consensus 444 ~~~~~l~~iK~~~DP~gilNPGk~~ 468 (474)
-.+.+++++|..+||+|||.-+.++
T Consensus 589 vG~~llka~K~~lDP~NIFa~~NLl 613 (613)
T KOG1233|consen 589 VGIALLKAIKSELDPANIFASANLL 613 (613)
T ss_pred HhHHHHHHHHHhcChhhhccccccC
Confidence 8999999999999999999877653
No 11
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=6.9e-37 Score=320.50 Aligned_cols=305 Identities=19% Similarity=0.233 Sum_probs=229.2
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHH
Q 011962 148 VNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWME 227 (474)
Q Consensus 148 ~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~ 227 (474)
...|.+|+.|+|++||+++|+.|++++++|+++|+|||+++... .+|++|||++||+|+++|.++.+|+|+||+++.+
T Consensus 12 ~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~--~~gvvIdl~~l~~i~~id~~~~~vtV~aG~~l~~ 89 (438)
T TIGR01678 12 SASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIAC--TDGFLIHLDKMNKVLQFDKEKKQITVEAGIRLYQ 89 (438)
T ss_pred cCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCcc--CCeEEEEhhhcCCceEEcCCCCEEEEcCCCCHHH
Confidence 35799999999999999999999999999999999999976554 4689999999999988999999999999999999
Q ss_pred HHHHHccCCCeeCCCCCC-CceecccccccccCCCccccccccceEEEEEEEecCCeEEEcccccccCcCCCchhhhhhc
Q 011962 228 LNEYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIG 306 (474)
Q Consensus 228 L~~~l~~~Gl~~~~~~~~-~~tvGG~i~~~~~G~~s~~yG~~~d~V~~~~vVl~dG~i~~~~~~~~~~~~g~dl~~~~~G 306 (474)
|.++|.++|++++..++. .+||||++++|+||. +.+||.++|+|+++++|++||++++++.. .++|+|++.+|
T Consensus 90 L~~~L~~~Gl~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~-----~~~dlf~a~~~ 163 (438)
T TIGR01678 90 LHEQLDEHGYSMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEE-----RNADVFQAARV 163 (438)
T ss_pred HHHHHHHcCCEecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCC-----CChhHHHHHhc
Confidence 999999999999876655 599999999999997 78999999999999999999999998644 45799999999
Q ss_pred cCCCeeEEEEEEEEeEecCchhH-------------------------------------------HH---H--------
Q 011962 307 SEGTLGIITEVTLRLQKIPQHSV-------------------------------------------MR---K-------- 332 (474)
Q Consensus 307 s~G~lGIIt~~tlkl~p~p~~~~-------------------------------------------~~---~-------- 332 (474)
++|+|||||++|||+.|...... .. .
T Consensus 164 ~~G~lGIIt~vtl~l~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (438)
T TIGR01678 164 SLGCLGIIVTVTIQVVPQFHLQETSFVSTLKELLDNWDSHWKSSEFFRVLWFPYTENVVIWRQNKTNKAPSSPSNSFWDY 243 (438)
T ss_pred CCCceEeeEEEEEEEEeccceEEEEecCCHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEECccCCCCcccccchhhhh
Confidence 99999999999999999764332 00 0
Q ss_pred ------------------------HHHHHHHhcCCC--------------------cccccccccccchhHHHHHHHHHH
Q 011962 333 ------------------------EALWACFAMEPS--------------------FEAMISDVCVPLSCLAELISRSKK 368 (474)
Q Consensus 333 ------------------------~~~w~~~~~~~~--------------------~~~~~~d~~vp~~~l~~~~~~~~~ 368 (474)
..++......+. ...+..++++|.++.++.++++++
T Consensus 244 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~f~~~~~Ey~vP~~~~~~al~~l~~ 323 (438)
T TIGR01678 244 KLGFFLYEFLLWTSKYLPCLTPWIERFFFWMLYGEKSSTKKESSNLSHKIFTMECRFSQHVQEWGIPREKTKEALLELKA 323 (438)
T ss_pred hHHHHHHHHHHHHHhhcccccHHHHHHHHHhhcCCccCCCcceecchHHhhcccceeehhceeecccHHHHHHHHHHHHH
Confidence 000000000000 011225889999999999999999
Q ss_pred HhhcC----CCeE-----EEEeec---C---------CCCeeEEEEeCCCChHHHHHHHHHHHHHHHHHHhcCCeeeecC
Q 011962 369 ELDAS----PLIC-----TVIAHA---G---------DGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEH 427 (474)
Q Consensus 369 ~~~~~----~l~~-----~~~gh~---~---------~g~~h~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~gG~~s~eh 427 (474)
++++. +... +.+.-+ . .....+.+........ ....+++.+.+.+...++||.++..+
T Consensus 324 ~~~~~~~~~~~~v~fpiEvR~~~~~~~Dd~wLSp~~~rds~~i~~~~y~~~~~-~~~~~~~f~~~E~i~~~~gGRPHWgK 402 (438)
T TIGR01678 324 MLEAHAKNKEVYAHYPVEVRFTRGTLPDECLLSPCFQVDTCYINAIMYRPFGK-DVPRLDYFLAYETIMKKFGGKPHWAK 402 (438)
T ss_pred HHHhcccccCceEeeeEEEEEeCCCCCCceecCCCCCCceEEEEEEEccCCCC-CCCHHHHHHHHHHHHHHcCCCCCchh
Confidence 98876 2211 112111 1 1122233322221100 01123566666666788999998332
Q ss_pred CCCcchHHHHHHhcCHHHHHHHHHHHHhcCCCCCCC
Q 011962 428 GIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMN 463 (474)
Q Consensus 428 g~G~~~~~~l~~~~g~~~~~~l~~iK~~~DP~gilN 463 (474)
--.......+.+.|. .++.|.++++++||+|+|.
T Consensus 403 ~h~~~~~~~l~~~YP--~~~~F~~vr~~~DP~g~F~ 436 (438)
T TIGR01678 403 AHNVCKQKDFEEMYP--TLHKFCDIRKKLDPTGVFL 436 (438)
T ss_pred cccccCHHHHHHHCc--CHHHHHHHHHhhCcccccC
Confidence 222234557778774 7999999999999999984
No 12
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=2.9e-36 Score=315.11 Aligned_cols=298 Identities=18% Similarity=0.189 Sum_probs=227.8
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHH
Q 011962 148 VNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWME 227 (474)
Q Consensus 148 ~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~ 227 (474)
...|.+|++|+|++||+++|+.|++ ||+++|+|||+.+.+. .+|++|||++||+|+++|+++++|+||||+++.|
T Consensus 9 ~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~--~~g~~idl~~l~~i~~~d~~~~~v~v~aG~~l~~ 83 (419)
T TIGR01679 9 VAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLAC--TDGTMISLTGLQGVVDVDQPTGLATVEAGTRLGA 83 (419)
T ss_pred cCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCccc--CCCEEEEhhHcCCceeecCCCCEEEEcCCCCHHH
Confidence 3579999999999999999999974 7999999999977543 4689999999999988999999999999999999
Q ss_pred HHHHHccCCCeeCCCCCC-CceecccccccccCCCccccccccceEEEEEEEecCCeEEEcccccccCcCCCchhhhhhc
Q 011962 228 LNEYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIG 306 (474)
Q Consensus 228 L~~~l~~~Gl~~~~~~~~-~~tvGG~i~~~~~G~~s~~yG~~~d~V~~~~vVl~dG~i~~~~~~~~~~~~g~dl~~~~~G 306 (474)
|.++|.++|+.+++.++. .+||||++++++||+ +.+||.++|+|++++||++||++++++.. .++||||+++|
T Consensus 84 l~~~L~~~G~~l~~~~~~~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~-----~~~dLf~a~~g 157 (419)
T TIGR01679 84 LGPQLAQRGLGLENQGDIDPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEG-----DDQDMYLAARV 157 (419)
T ss_pred HHHHHHHcCCccccCCCCCCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCC-----CCHHHHHHHHh
Confidence 999999999999977666 699999999999998 57899999999999999999999998643 46899999999
Q ss_pred cCCCeeEEEEEEEEeEecCchhH------------------------------------------HH------HH-----
Q 011962 307 SEGTLGIITEVTLRLQKIPQHSV------------------------------------------MR------KE----- 333 (474)
Q Consensus 307 s~G~lGIIt~~tlkl~p~p~~~~------------------------------------------~~------~~----- 333 (474)
++|+|||||++|||++|.+.... .. ..
T Consensus 158 ~~G~lGVIt~vtl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (419)
T TIGR01679 158 SLGALGVISQVTLQTVALFRLRRRDWRRPLAQTLERLDEFVDGHRHFEFYVFPFAGKALTITMDRSDEQPKPRQRDVDEN 237 (419)
T ss_pred CCCceEEEEEEEEEeecceEeEEEEEecCHHHHHHHHHHHHhcCCeEEEEEecCCCeEEEEECCcCCCcccccccchhhh
Confidence 99999999999999999874332 00 00
Q ss_pred ---H----HHHHH---------------hcCCC---------------cccccccccccchhHHHHHHHHHHHhhcCCCe
Q 011962 334 ---A----LWACF---------------AMEPS---------------FEAMISDVCVPLSCLAELISRSKKELDASPLI 376 (474)
Q Consensus 334 ---~----~w~~~---------------~~~~~---------------~~~~~~d~~vp~~~l~~~~~~~~~~~~~~~l~ 376 (474)
. .+... ...+. ......++++|.++.++.++++.+++++.+..
T Consensus 238 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~f~q~e~~iP~~~~~~al~~i~~~i~~~~~~ 317 (419)
T TIGR01679 238 FLGGLRLLRQTLRRFPSLRPRLNRLMTNMMSSETVVDRAYKVFATQRKVRFNEMEYHLPRENGRKALQEVIDLVERRSPP 317 (419)
T ss_pred HHHHHHHHHHhcccCchhHHHHHHHHHhhcCCceeeccceEEecccccceeeEEEEecchhHHHHHHHHHHHHHHhcCCC
Confidence 0 00000 00000 01123467999999999999999988876421
Q ss_pred ----E-EEEeecCCC---------CeeEEEEeCCCChHHHHHHHHHHHHHHHHHHhcCCeeeecCCCCcchHHHHHHhcC
Q 011962 377 ----C-TVIAHAGDG---------NFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGEHGIGTGKMKYLEKELG 442 (474)
Q Consensus 377 ----~-~~~gh~~~g---------~~h~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~gG~~s~ehg~G~~~~~~l~~~~g 442 (474)
. ..++-+.++ ...+.+.+... . ...++.+.+.+.+.++||.++..+--.+ ..+-+.+.|+
T Consensus 318 ~~~pve~R~~~ad~~~LS~~~~r~~~~ia~~~~~~--~---~~~~~~~~~e~i~~~~gGRpHwgK~~~l-~~~~l~~~YP 391 (419)
T TIGR01679 318 VMFPIEVRFSAPDDSWLSPFYGRPTCSIAVHQYAG--M---DFESYFRAVEPIFRRYAGRPHWGKRHYL-TAATLRERYP 391 (419)
T ss_pred ccceEEEEEecCCCcccCCCCCCCcEEEEEEEcCC--C---CHHHHHHHHHHHHHHcCCCCCchhccCC-CHHHHHHHCc
Confidence 1 123322221 11122222211 1 2456777777778999999985542233 5566778886
Q ss_pred HHHHHHHHHHHHhcCCCCCCCC
Q 011962 443 TGALETMKRIKVALDPNNIMNP 464 (474)
Q Consensus 443 ~~~~~~l~~iK~~~DP~gilNP 464 (474)
.++.|.++|+++||+|+|..
T Consensus 392 --~~~~F~~~r~~~DP~g~F~n 411 (419)
T TIGR01679 392 --RWDDFAAVRDDLDPDRRFLN 411 (419)
T ss_pred --CHHHHHHHHHHhCCCCccCC
Confidence 69999999999999999843
No 13
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=7.8e-35 Score=307.57 Aligned_cols=172 Identities=24% Similarity=0.339 Sum_probs=157.6
Q ss_pred CCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHHH
Q 011962 149 NIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMEL 228 (474)
Q Consensus 149 ~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L 228 (474)
..|..+++|+|++||+++|+.|++++++|+++|+|||+.+.+.. ++.+|||++||+|+++|.++++|+|+||+++.+|
T Consensus 60 ~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t--~g~lldL~~ln~Vl~vD~~~~tVtV~AG~~l~~L 137 (541)
T TIGR01676 60 VLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLS--RAGMVNLALMDKVLEVDEEKKRVRVQAGIRVQQL 137 (541)
T ss_pred cCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccC--CCeEEEhhhCCCCEEEcCCCCEEEEcCCCCHHHH
Confidence 57999999999999999999999999999999999999887765 3558999999999999999999999999999999
Q ss_pred HHHHccCCCeeCCCCCC-CceecccccccccCCCccccccccceEEEEEEEecCCeEEEcccccccCcCCCchhhhhhcc
Q 011962 229 NEYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGS 307 (474)
Q Consensus 229 ~~~l~~~Gl~~~~~~~~-~~tvGG~i~~~~~G~~s~~yG~~~d~V~~~~vVl~dG~i~~~~~~~~~~~~g~dl~~~~~Gs 307 (474)
.+.|.++|+.++..+.+ .+||||++++|+||+ +.+||.++|+|+++++|+++|++++++.. .++|||++++|+
T Consensus 138 ~~~L~~~Glal~n~gsi~~~TIGGaiatgtHGt-g~~~G~l~d~V~~l~lVta~G~vv~~s~~-----~~pdLF~Aargs 211 (541)
T TIGR01676 138 VDAIKEYGITLQNFASIREQQIGGIIQVGAHGT-GAKLPPIDEQVIAMKLVTPAKGTIEISKD-----KDPELFFLARCG 211 (541)
T ss_pred HHHHHHcCCEeccCCCCCCceEccccccCCcCC-CCCCCCHHHhEEEEEEEECCCCEEEECCC-----CCHHHHHHHhcC
Confidence 99999999999876654 699999999999999 45899999999999999999999988543 357999999999
Q ss_pred CCCeeEEEEEEEEeEecCchh
Q 011962 308 EGTLGIITEVTLRLQKIPQHS 328 (474)
Q Consensus 308 ~G~lGIIt~~tlkl~p~p~~~ 328 (474)
+|+|||||++|||+.|.+...
T Consensus 212 lG~LGVItevTLr~~Pa~~l~ 232 (541)
T TIGR01676 212 LGGLGVVAEVTLQCVERQELV 232 (541)
T ss_pred CCceEeEEEEEEEEEecccee
Confidence 999999999999999987543
No 14
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=1.3e-34 Score=309.47 Aligned_cols=173 Identities=25% Similarity=0.308 Sum_probs=155.2
Q ss_pred CCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEc-CCCCCCCCCcCC--CCcEEEEcCCCCCcEEeecCCCeEecCCCCcH
Q 011962 149 NIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYG-GATSIEGHTLSP--NGGVCIDLSLMKSVKALHIEDMDVVVEPGIGW 225 (474)
Q Consensus 149 ~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~G-gG~s~~g~~~~~--~~givIdl~~m~~i~~id~~~~~v~V~aGv~~ 225 (474)
..|.+|++|+|++||+++|++|+++++||+++| +||++.+.+... ++|++|||++||+|+++|.++.+|+|+||+++
T Consensus 30 ~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVtV~AG~~l 109 (557)
T TIGR01677 30 CRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVTVESGMSL 109 (557)
T ss_pred CCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEEECCCCcH
Confidence 579999999999999999999999999999995 689987655442 24699999999999889999999999999999
Q ss_pred HHHHHHHccCCCeeCCCCCC-CceecccccccccCCCc-cccccccceEEEEEEEecCC------eEEEcccccccCcCC
Q 011962 226 MELNEYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLA-VRYGTMRDNVINLKVVLANG------DVVKTASRARKSAAG 297 (474)
Q Consensus 226 ~~L~~~l~~~Gl~~~~~~~~-~~tvGG~i~~~~~G~~s-~~yG~~~d~V~~~~vVl~dG------~i~~~~~~~~~~~~g 297 (474)
.+|.+.|.++|+.++..+.. ..||||++++|+||+.. +.||.++|+|++++||++|| ++++++.. .+
T Consensus 110 ~~L~~~L~~~Glal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s~~-----~~ 184 (557)
T TIGR01677 110 RELIVEAEKAGLALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILSEG-----DT 184 (557)
T ss_pred HHHHHHHHHcCCEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeCCC-----CC
Confidence 99999999999999988765 68999999999999865 48889999999999999999 78877432 45
Q ss_pred CchhhhhhccCCCeeEEEEEEEEeEecCc
Q 011962 298 YDLTRLIIGSEGTLGIITEVTLRLQKIPQ 326 (474)
Q Consensus 298 ~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~ 326 (474)
+|||++++|++|+|||||++|||++|.+.
T Consensus 185 ~dLf~a~rgslG~lGVVtevTL~~~P~~~ 213 (557)
T TIGR01677 185 PNEFNAAKVSLGVLGVISQVTLALQPMFK 213 (557)
T ss_pred HHHHHhhccCCCccEeeeEEEEEEEcccc
Confidence 79999999999999999999999999864
No 15
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=100.00 E-value=1.9e-33 Score=299.35 Aligned_cols=170 Identities=25% Similarity=0.328 Sum_probs=156.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHHH
Q 011962 149 NIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMEL 228 (474)
Q Consensus 149 ~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L 228 (474)
..|.+++.|+|++||+++|+.|++++++|+++|+|||..+.... ++.+|||++||+|+++|.+.++|+|+||+++.+|
T Consensus 95 ~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~t--d~glIdL~~l~~Il~vD~e~~~VtV~AG~~l~~L 172 (573)
T PLN02465 95 VQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFS--REGMVNLALMDKVLEVDKEKKRVTVQAGARVQQV 172 (573)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeC--CCEEEECcCCCCcEEEeCCCCEEEEccCCCHHHH
Confidence 57999999999999999999999999999999999998776654 3457899999999889999999999999999999
Q ss_pred HHHHccCCCeeCCCCCC-CceecccccccccCCCccccccccceEEEEEEEecCCeEEEcccccccCcCCCchhhhhhcc
Q 011962 229 NEYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGS 307 (474)
Q Consensus 229 ~~~l~~~Gl~~~~~~~~-~~tvGG~i~~~~~G~~s~~yG~~~d~V~~~~vVl~dG~i~~~~~~~~~~~~g~dl~~~~~Gs 307 (474)
.+.|.++||+++..+++ .+||||++++|+||+ +..+|.++|+|+++++|+++|++++++.. ..+|||++.+++
T Consensus 173 ~~~L~~~GLal~n~g~I~~~TIGGaIstGtHGt-G~~~g~i~d~V~~l~lVta~G~vv~~s~~-----~~pdLF~aar~g 246 (573)
T PLN02465 173 VEALRPHGLTLQNYASIREQQIGGFIQVGAHGT-GARIPPIDEQVVSMKLVTPAKGTIELSKE-----DDPELFRLARCG 246 (573)
T ss_pred HHHHHHcCCEeccCCCCCCeeecchhhCCCCCc-CCCcCcHhheEEEEEEEECCCCEEEECCC-----CCHHHHhHhhcc
Confidence 99999999999988777 799999999999999 45899999999999999999999988543 347999999999
Q ss_pred CCCeeEEEEEEEEeEecCc
Q 011962 308 EGTLGIITEVTLRLQKIPQ 326 (474)
Q Consensus 308 ~G~lGIIt~~tlkl~p~p~ 326 (474)
.|.|||||++||++.|.+.
T Consensus 247 lG~lGVIteVTLql~P~~~ 265 (573)
T PLN02465 247 LGGLGVVAEVTLQCVPAHR 265 (573)
T ss_pred CCCCcEEEEEEEEEEecCc
Confidence 9999999999999999875
No 16
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=100.00 E-value=4.6e-33 Score=278.61 Aligned_cols=258 Identities=17% Similarity=0.184 Sum_probs=207.9
Q ss_pred CcccCCCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCCcEEEEcCC-CCCcEEeecCCCeEecCC
Q 011962 143 SFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSL-MKSVKALHIEDMDVVVEP 221 (474)
Q Consensus 143 ~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~givIdl~~-m~~i~~id~~~~~v~V~a 221 (474)
+++++++.|++++.|+|++||++++++|+++++|++++|+|||+....-. .+|++||+++ |+.| +.++.+|+|+|
T Consensus 23 ~t~~igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g-~~gvvI~l~~~l~~i---~~~~~~v~v~a 98 (298)
T PRK13905 23 TSFRVGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGG-IRGVVIRLGKGLNEI---EVEGNRITAGA 98 (298)
T ss_pred ceeecCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCC-cceEEEEecCCcceE---EecCCEEEEEC
Confidence 44588999999999999999999999999999999999999997422111 1389999998 8886 34567999999
Q ss_pred CCcHHHHHHHHccCCCe-eCCCCCCCceecccccccccCCCccccc-cccceEEEEEEEecCCeEEEcccccccCcCCCc
Q 011962 222 GIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYG-TMRDNVINLKVVLANGDVVKTASRARKSAAGYD 299 (474)
Q Consensus 222 Gv~~~~L~~~l~~~Gl~-~~~~~~~~~tvGG~i~~~~~G~~s~~yG-~~~d~V~~~~vVl~dG~i~~~~~~~~~~~~g~d 299 (474)
|+.|.+|.++|.++|+. ++...++++||||++.+| ++.|| .++|+|+++++|++||+++++... |
T Consensus 99 G~~~~~L~~~l~~~Gl~gle~~~gipGTVGGai~~N-----aG~~G~~~~d~v~~v~vv~~~G~~~~~~~~--------e 165 (298)
T PRK13905 99 GAPLIKLARFAAEAGLSGLEFAAGIPGTVGGAVFMN-----AGAYGGETADVLESVEVLDRDGEIKTLSNE--------E 165 (298)
T ss_pred CCcHHHHHHHHHHcCCCcchhccCCCcchhHHHHHc-----CCcCceEhheeEEEEEEEeCCCCEEEEEHH--------H
Confidence 99999999999999996 777888889999999999 55687 599999999999999999987533 6
Q ss_pred hhhhhhccCCC--eeEEEEEEEEeEecCchhHHHH-HHHHHHHhcCCCcccccccccccchhHHHHHHHHHHHhhcCCCe
Q 011962 300 LTRLIIGSEGT--LGIITEVTLRLQKIPQHSVMRK-EALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLI 376 (474)
Q Consensus 300 l~~~~~Gs~G~--lGIIt~~tlkl~p~p~~~~~~~-~~~w~~~~~~~~~~~~~~d~~vp~~~l~~~~~~~~~~~~~~~l~ 376 (474)
++|.++++... +||||+++||++|.....+... +.+.. .+...++..+....+++.++ +.. .+.++|++.|++
T Consensus 166 ~~~~yR~s~~~~~~gII~~~~l~l~~~~~~~i~~~~~~~~~-~R~~~~P~~~~s~Gs~FkNP-~~~--~ag~LIe~~Glk 241 (298)
T PRK13905 166 LGFGYRHSALQEEGLIVLSATFQLEPGDKEEIKARMDELLA-RREATQPLEYPSAGSVFKNP-PGH--FAGKLIEEAGLK 241 (298)
T ss_pred cCCcCccccCCCCCEEEEEEEEEEcCCCHHHHHHHHHHHHH-HHHhcCCCCCCccceeeeCC-CCc--hHHHHHHHcCCC
Confidence 77777776443 7999999999999854433221 22222 22223344556667777666 222 456899999999
Q ss_pred EEEEeecCCCCeeEEEEeCCCChHHHHHHHHHHHHHHHHHHhcCCe
Q 011962 377 CTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGT 422 (474)
Q Consensus 377 ~~~~gh~~~g~~h~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~gG~ 422 (474)
+..+|.++.+..|+||++|.+.++. +++.+|++.+.++|.+..|.
T Consensus 242 G~~~G~a~vs~~hanfivN~g~at~-~dv~~L~~~v~~~V~~~~gi 286 (298)
T PRK13905 242 GYRIGGAQVSEKHANFIINTGGATA-ADIEDLIEHVQKTVKEKFGV 286 (298)
T ss_pred CCccCCEEEccccCcEEEECCCCCH-HHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999987665 78999999999999887654
No 17
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=100.00 E-value=1.2e-32 Score=274.94 Aligned_cols=281 Identities=17% Similarity=0.168 Sum_probs=216.2
Q ss_pred CHHHHHHHHhhcCCCcccChhhhhhhcCCCCCcccCCCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCc
Q 011962 112 PQELVDELKAICQDDMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191 (474)
Q Consensus 112 ~~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~ 191 (474)
..+++++|++.++.++..+ +.+ ..+ +++++++.|++++.|+|++||++++++|+++++|++++|+|||+ +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~--~~l---~~~-tt~~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNl----l 72 (302)
T PRK14652 3 EATWRDEIARRVRGEVLRD--APL---APR-TAVRVGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANT----L 72 (302)
T ss_pred hHHHHHHHHHhhccccccC--CCc---ccc-cEeecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcce----e
Confidence 4578899999887765432 333 233 45589999999999999999999999999999999999999998 3
Q ss_pred CCCC---cEEEEcCCC-CCcEEeecCCCeEecCCCCcHHHHHHHHccCCCe-eCCCCCCCceecccccccccCCCccccc
Q 011962 192 SPNG---GVCIDLSLM-KSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYG 266 (474)
Q Consensus 192 ~~~~---givIdl~~m-~~i~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~-~~~~~~~~~tvGG~i~~~~~G~~s~~yG 266 (474)
..++ |++|+++++ +.+ +.++.+++|+||+.|.+|.+++.++||. +++..++++||||++.||++ ..||
T Consensus 73 v~d~g~~gvVI~l~~~~~~i---~~~~~~v~v~AG~~~~~L~~~~~~~GL~GlE~l~gIPGTvGGav~mNaG----a~gg 145 (302)
T PRK14652 73 VADAGVRGVVLRLPQDFPGE---STDGGRLVLGAGAPISRLPARAHAHGLVGMEFLAGIPGTLGGAVAMNAG----TKLG 145 (302)
T ss_pred ecCCCEeeEEEEecCCcceE---EecCCEEEEECCCcHHHHHHHHHHcCCcccccccCCCcchhHHHHHcCC----CCce
Confidence 3343 799999764 433 3456799999999999999999999998 88888899999999999942 2456
Q ss_pred cccceEEEEEEEecCCeEEEcccccccCcCCCchhhhhhccCCCeeEEEEEEEEeEecCchhHHHH-HHHHHHHhcCCCc
Q 011962 267 TMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVMRK-EALWACFAMEPSF 345 (474)
Q Consensus 267 ~~~d~V~~~~vVl~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~~~~-~~~w~~~~~~~~~ 345 (474)
.++|+|.++++|+++| ..+.... +..++|+ ..+.+. + ||||+++|+++|.+.....+. ..++.. +...++
T Consensus 146 ei~d~v~~v~vv~~~G-~~~~~~~--e~~f~YR--~s~~~~-~--~II~~a~~~L~~~~~~~i~~~~~~~~~~-R~~~qP 216 (302)
T PRK14652 146 EMKDVVTAVELATADG-AGFVPAA--ALGYAYR--TCRLPP-G--AVITRVEVRLRPGDVAASEALMRADRER-RRRTQP 216 (302)
T ss_pred EhhheEEEEEEECCCC-cEEeehh--hcCcccc--eeccCC-C--eEEEEEEEEEecCCHHHHHHHHHHHHHH-HHhcCC
Confidence 6999999999999999 4444322 2223333 333332 3 899999999999876543222 223333 233334
Q ss_pred ccccccccccchhHHHHHHHHHHHhhcCCCeEEEEeecCCCCeeEEEEeCCCChHHHHHHHHHHHHHHHHHHhcCCe
Q 011962 346 EAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGT 422 (474)
Q Consensus 346 ~~~~~d~~vp~~~l~~~~~~~~~~~~~~~l~~~~~gh~~~g~~h~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~gG~ 422 (474)
..+....+++.++- +. .+.++|++.|+++..+|.++.+..|+||++|.+.++. +++.+|++.+.+.+.+..|.
T Consensus 217 ~~~psaGS~FkNP~-~~--~Ag~LIe~~GlkG~~~G~a~vS~kHanfivN~g~ata-~di~~Li~~v~~~V~~~~gi 289 (302)
T PRK14652 217 LDRPTFGSTFTNPP-GD--YAGRLVEAVGLKGHRVGGAIWSPVHANFVTNLGGATA-RDVLALVRLARARVKERFGI 289 (302)
T ss_pred CCCCCccceeeCcC-Cc--cHHHHHHHcCCCCCccCCEEEcccccCEEEECCCCCH-HHHHHHHHHHHHHHHHHHCC
Confidence 45667778877763 22 4568999999999999999999999999999987765 78999999999999887553
No 18
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.97 E-value=2e-31 Score=266.77 Aligned_cols=281 Identities=17% Similarity=0.244 Sum_probs=221.7
Q ss_pred HHHHHHHHhhcCC-CcccChhhhhhhcCCCCCcccCCCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCc
Q 011962 113 QELVDELKAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL 191 (474)
Q Consensus 113 ~~~~~~L~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~ 191 (474)
.+++++|++.+++ .+..+ +.+ ..+ +++++++.|++++.|+|++||++++++|+++++|+.++|+|||+ +
T Consensus 4 ~~~~~~l~~~~~~~~v~~~--~~L---~~~-tt~~iGG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNl----l 73 (307)
T PRK13906 4 KDIYQALQQLIPNEKIKVD--EPL---KRY-TYTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNI----I 73 (307)
T ss_pred HHHHHHHHHhcCCCeeecC--Ccc---ccc-eEcCcCceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeE----e
Confidence 4578889998864 45543 222 123 34478899999999999999999999999999999999999998 3
Q ss_pred CCCC---cEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHHHHHccCCCe-eCCCCCCCceecccccccccCCCccccc-
Q 011962 192 SPNG---GVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYG- 266 (474)
Q Consensus 192 ~~~~---givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~-~~~~~~~~~tvGG~i~~~~~G~~s~~yG- 266 (474)
..++ |++|++++|++|. ++ +.+++|+||+.|.+|.+++.++||. ++...++++||||++.|| ++.||
T Consensus 74 ~~d~g~~GvvI~l~~l~~i~-~~--~~~v~v~aG~~~~~l~~~~~~~Gl~GlE~~~gIPGtVGGav~mN-----aGayGg 145 (307)
T PRK13906 74 IREGGIRGIVISLLSLDHIE-VS--DDAIIAGSGAAIIDVSRVARDYALTGLEFACGIPGSIGGAVYMN-----AGAYGG 145 (307)
T ss_pred ecCCCcceEEEEecCccceE-Ee--CCEEEEECCCcHHHHHHHHHHcCCccchhhcCCCccHhHHHHhh-----CCcchh
Confidence 3333 8999998899985 43 4689999999999999999999998 777778899999999999 55675
Q ss_pred cccceEEEEEEEecCCeEEEcccccccCcCCCchhhhhhccCCCeeEEEEEEEEeEecCchhHHHH-HHHHHHHhcCCCc
Q 011962 267 TMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVMRK-EALWACFAMEPSF 345 (474)
Q Consensus 267 ~~~d~V~~~~vVl~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~~~~-~~~w~~~~~~~~~ 345 (474)
.++|+|+++++|+++|++++.... +..++|+-+.+.. .-.||++++|++.|.....+... ..++.. +...++
T Consensus 146 ~i~D~l~~v~vv~~~G~~~~~~~~--e~~f~YR~S~~~~----~~~ii~~~~~~l~~~~~~~i~~~~~~~~~~-R~~~qP 218 (307)
T PRK13906 146 EVKDCIDYALCVNEQGSLIKLTTK--ELELDYRNSIIQK----EHLVVLEAAFTLAPGKMTEIQAKMDDLTER-RESKQP 218 (307)
T ss_pred hhhhheeEEEEEeCCCCEEEEEHH--HccCcCCcccCCC----CCEEEEEEEEEECCCCHHHHHHHHHHHHHH-HHhcCC
Confidence 699999999999999999988654 5668888655422 12699999999998654433222 223332 223334
Q ss_pred ccccccccccchhHHHHHHHHHHHhhcCCCeEEEEeecCCCCeeEEEEeCCCChHHHHHHHHHHHHHHHHHHhcCCe
Q 011962 346 EAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGT 422 (474)
Q Consensus 346 ~~~~~d~~vp~~~l~~~~~~~~~~~~~~~l~~~~~gh~~~g~~h~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~gG~ 422 (474)
..+....+++.+. ++. .+.++|++.|+++..+|.++.+..|+||++|.+.++. +++.+|++.+.++|.+..|.
T Consensus 219 ~~~psaGS~FkNP-~~~--~ag~LIe~~GlkG~~iG~a~vS~kHanfivN~g~At~-~di~~Li~~v~~~V~~~~gi 291 (307)
T PRK13906 219 LEYPSCGSVFQRP-PGH--FAGKLIQDSNLQGHRIGGVEVSTKHAGFMVNVDNGTA-TDYENLIHYVQKTVKEKFGI 291 (307)
T ss_pred CCCCCccceecCC-CCC--chHHHHHHcCCCCCccCCEEEccccccEEEECCCCCH-HHHHHHHHHHHHHHHHHHCC
Confidence 4566677777766 232 3568999999999999999999999999999987665 78999999999999887654
No 19
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.97 E-value=2e-31 Score=266.75 Aligned_cols=281 Identities=17% Similarity=0.186 Sum_probs=219.1
Q ss_pred HHHHHHHhhcCC-CcccChhhhhhhcCCCCCcccCCCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcC
Q 011962 114 ELVDELKAICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLS 192 (474)
Q Consensus 114 ~~~~~L~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~ 192 (474)
+++++|++.++. .+..+ +.+ ..+++ +++++.|++++.|+|++||++++++|+++++|++++|+|||+. .
T Consensus 5 ~~~~~l~~~l~~~~~~~~--~~l---~~~tt-~~igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll----~ 74 (305)
T PRK12436 5 EVYEYLSTVLPEGHVKQD--EML---KNHTH-IKVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVI----I 74 (305)
T ss_pred HHHHHHHHhcCcCceecC--Ccc---hhccC-cccCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEE----E
Confidence 456778887754 33333 222 12333 3788999999999999999999999999999999999999983 3
Q ss_pred CCC---cEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHHHHHccCCCe-eCCCCCCCceecccccccccCCCcccccc-
Q 011962 193 PNG---GVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT- 267 (474)
Q Consensus 193 ~~~---givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~-~~~~~~~~~tvGG~i~~~~~G~~s~~yG~- 267 (474)
.++ |++|+|++|+.|. + ++.+++|+||+.|.+|.+++.++||. ++...++++||||++.|| ++.||.
T Consensus 75 ~d~g~~GvvI~l~~l~~i~-~--~~~~v~v~aG~~~~~L~~~~~~~gl~Gle~~~giPGtVGGav~~N-----AGayG~~ 146 (305)
T PRK12436 75 KDGGIRGITVSLIHITGVT-V--TGTTIVAQCGAAIIDVSRIALDHNLTGLEFACGIPGSVGGALYMN-----AGAYGGE 146 (305)
T ss_pred eCCCeeEEEEEeCCcCcEE-E--eCCEEEEEeCCcHHHHHHHHHHcCCccchhhcCCccchhHHHHhc-----Cccchhe
Confidence 344 8999998899874 4 45789999999999999999999997 777788899999999999 556885
Q ss_pred ccceEEEEEEEecCCeEEEcccccccCcCCCchhhhhhccCCCeeEEEEEEEEeEecCchhHHH-HHHHHHHHhcCCCcc
Q 011962 268 MRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVMR-KEALWACFAMEPSFE 346 (474)
Q Consensus 268 ~~d~V~~~~vVl~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~~~-~~~~w~~~~~~~~~~ 346 (474)
+.|.+.+++|+++||++++...+ +..++|+-+.+ .....||++++|++.+.....+.+ ....+..+ ...++.
T Consensus 147 ~~dvl~~v~vv~~~G~v~~~~~~--e~~f~YR~s~~----~~~~~iil~a~~~l~~~~~~~i~~~~~~~~~~R-~~~qP~ 219 (305)
T PRK12436 147 ISFVLTEAVVMTGDGELRTLTKE--AFEFGYRKSVF----ANNHYIILEARFELEEGVYEEIKAKMDDLTFKR-ESKQPL 219 (305)
T ss_pred hheeeeEEEEEeCCCCEEEEEHH--HhcCcCCCCcC----CCCCEEEEEEEEEEcCCCHHHHHHHHHHHHHHH-HhhCCC
Confidence 88999999999999999988654 45577775443 123479999999999875443322 22233332 233445
Q ss_pred cccccccccchhHHHHHHHHHHHhhcCCCeEEEEeecCCCCeeEEEEeCCCChHHHHHHHHHHHHHHHHHHhcCCee
Q 011962 347 AMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTC 423 (474)
Q Consensus 347 ~~~~d~~vp~~~l~~~~~~~~~~~~~~~l~~~~~gh~~~g~~h~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~gG~~ 423 (474)
.+....+++.++ ++. .+.++|++.|+++..+|.++.+..|+||++|.+.++. +++.+|++.+.++|.+..|..
T Consensus 220 ~~ps~GS~FknP-~~~--~ag~LIe~~GlkG~~iG~a~vS~~HanfivN~g~ata-~di~~Li~~v~~~V~~~~gi~ 292 (305)
T PRK12436 220 EYPSCGSVFKRP-PNN--FAGKLIQESGLQGKRIGGVEVSLKHAGFMVNVDNGTA-QDYIDLIHFVQKTVEEKFGVK 292 (305)
T ss_pred CCCccceeeeCC-CCC--cHHHHHHHhCCCCCcccCEEEccccccEEEECCCCCH-HHHHHHHHHHHHHHHHHHCCe
Confidence 566777787776 332 3568999999999999999999999999999987765 789999999999998876543
No 20
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.97 E-value=5.5e-31 Score=261.39 Aligned_cols=263 Identities=16% Similarity=0.207 Sum_probs=210.7
Q ss_pred CcccCCCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCCcEEEEcCCCCCcEEeecCCCeEecCCC
Q 011962 143 SFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPG 222 (474)
Q Consensus 143 ~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~givIdl~~m~~i~~id~~~~~v~V~aG 222 (474)
+++++++.|.++++|+|++||++++++|+++++|++++|+|||+...... .+|++|++++|+.+. ++. +.+++|+||
T Consensus 5 tt~~igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~-~~gvvi~l~~~~~~~-~~~-~~~v~v~aG 81 (284)
T TIGR00179 5 TTYKIGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDG-RGGVIINLGKGIDIE-DDE-GEYVHVGGG 81 (284)
T ss_pred ceeecCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCC-cCeEEEECCCCceEE-Eec-CCEEEEEcC
Confidence 45589999999999999999999999999999999999999998544322 468999999998875 555 578999999
Q ss_pred CcHHHHHHHHccCCCe-eCCCCCCCceecccccccccCCCcccccc-ccceEEEEEEEecCCeEEEcccccccCcCCCch
Q 011962 223 IGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLANGDVVKTASRARKSAAGYDL 300 (474)
Q Consensus 223 v~~~~L~~~l~~~Gl~-~~~~~~~~~tvGG~i~~~~~G~~s~~yG~-~~d~V~~~~vVl~dG~i~~~~~~~~~~~~g~dl 300 (474)
+.|.+|.+++.++||. ++...++++||||++.|| ++.||. +.|.|+++++|++||++++...+ +..++|+-
T Consensus 82 ~~~~~l~~~~~~~Gl~GlE~l~giPGtvGGai~mN-----AGayG~~i~d~l~~v~vv~~~G~~~~~~~~--~~~f~YR~ 154 (284)
T TIGR00179 82 ENWHKLVKYALKNGLSGLEFLAGIPGTVGGAVIMN-----AGAYGVEISEVLVYATILLATGKTEWLTNE--QLGFGYRT 154 (284)
T ss_pred CcHHHHHHHHHHCCCcccccCCCCCchHHHHHHHh-----cccchhehhheEEEEEEEeCCCCEEEEEHH--HccccCCc
Confidence 9999999999999998 888888999999999999 677988 66789999999999999988654 56688886
Q ss_pred hhhhhccCCCeeEEEEEEEEe-----EecCchhHHHHHHHHHHHhcCCCcccccccccccchhHHHHHHHHHHHhhcCCC
Q 011962 301 TRLIIGSEGTLGIITEVTLRL-----QKIPQHSVMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPL 375 (474)
Q Consensus 301 ~~~~~Gs~G~lGIIt~~tlkl-----~p~p~~~~~~~~~~w~~~~~~~~~~~~~~d~~vp~~~l~~~~~~~~~~~~~~~l 375 (474)
+.+.. . ...||++++|++ .|.+...+..........+...++...+...+++.++-.. .+.++|++.|+
T Consensus 155 S~f~~-~--~~~iil~a~~~l~~~~~~~~~~~~i~~~~~~~~~~r~~~~p~~~psaGS~FkNP~~~---~Ag~LIe~~Gl 228 (284)
T TIGR00179 155 SIFQH-K--YVGLVLKAEFQLTLGFGTRLDPETITAQQVFNKVCRMRTSHYPDPNAGSFFKNPSPN---HAGRLIEECGL 228 (284)
T ss_pred cccCC-C--CcEEEEEEEEEecccccccCChhhhhHHHHHHHHHHHHcCCCcCCCccccccCcCCc---hHHHHHHHcCC
Confidence 65421 1 137999999999 6665443312121111222223333445777787777432 45689999999
Q ss_pred eEEEEeecCCCCeeEEEEeCCCChHHHHHHHHHHHHHHHHHHhcCCe
Q 011962 376 ICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGT 422 (474)
Q Consensus 376 ~~~~~gh~~~g~~h~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~gG~ 422 (474)
++..+|.++.+..|+||++|.+.++. +++.+|++.+.+.|.+..|.
T Consensus 229 kG~~iG~a~vS~~HanfivN~g~At~-~di~~Li~~v~~~V~~~~gi 274 (284)
T TIGR00179 229 KGYQIGGAAVSKQHANFLVNIDNAKS-EDVLDLIEHVKAEVGEKYGI 274 (284)
T ss_pred CCCccCCEEEccccCcEEEECCCCCH-HHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999887665 78999999999999887654
No 21
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.97 E-value=7.2e-30 Score=253.68 Aligned_cols=260 Identities=14% Similarity=0.141 Sum_probs=209.0
Q ss_pred CcccCCCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCCcEEEEcCCCCCcEEeecCCCeEecCCC
Q 011962 143 SFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPG 222 (474)
Q Consensus 143 ~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~givIdl~~m~~i~~id~~~~~v~V~aG 222 (474)
+++++++.+++++.|+|++|+++++++|++ ++|+.+.|+|||+....-+. +|++|.+.+|+.|. ++ +..++|+||
T Consensus 26 tt~~iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~-~gvVI~l~~~~~i~-i~--~~~v~v~AG 100 (297)
T PRK14653 26 VSFKIGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPM-DFVVVSTERLDDIF-VD--NDKIICESG 100 (297)
T ss_pred CEeeeCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCc-cEEEEEeCCcCceE-Ee--CCEEEEeCC
Confidence 455999999999999999999999999999 99999999999984333222 38999997799984 54 468999999
Q ss_pred CcHHHHHHHHccCCCe-eCCCCCCCceecccccccccCCCcccccc-ccceEEEEEEEecCCeEEEcccccccCcCCCch
Q 011962 223 IGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLANGDVVKTASRARKSAAGYDL 300 (474)
Q Consensus 223 v~~~~L~~~l~~~Gl~-~~~~~~~~~tvGG~i~~~~~G~~s~~yG~-~~d~V~~~~vVl~dG~i~~~~~~~~~~~~g~dl 300 (474)
+.|.+|..++.++||. +++..++|+||||++.|| ++.||. ++|.|.++++++ +|++++...+ +..++|+-
T Consensus 101 ~~l~~L~~~~~~~GL~GlE~l~gIPGTVGGAv~mN-----AGayG~ei~d~l~~V~~~d-~g~v~~~~~~--e~~f~YR~ 172 (297)
T PRK14653 101 LSLKKLCLVAAKNGLSGFENAYGIPGSVGGAVYMN-----AGAYGWETAENIVEVVAYD-GKKIIRLGKN--EIKFSYRN 172 (297)
T ss_pred CcHHHHHHHHHHCCCcchhhhcCCchhHHHHHHHh-----CccCchhhheeEEEEEEEC-CCEEEEEchh--hccccCcc
Confidence 9999999999999998 999999999999999999 677999 999999999999 7888887554 55577764
Q ss_pred hhhhhccCCCeeEEEEEEEEeEecCchhHHHH-HHHHHHHhcCCCcccccccccccchhHHHHHHHHHHHhhcCCCeEEE
Q 011962 301 TRLIIGSEGTLGIITEVTLRLQKIPQHSVMRK-EALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTV 379 (474)
Q Consensus 301 ~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~~~~-~~~w~~~~~~~~~~~~~~d~~vp~~~l~~~~~~~~~~~~~~~l~~~~ 379 (474)
+.+ +.++.+ ||++++|++.|.++..+... +..+.. +...++..+....+++.++.+.. .+.++|++.|+++..
T Consensus 173 S~~--~~~~~~-iI~~a~f~L~~~~~~~i~~~~~~~~~~-R~~kqP~~~psaGS~FkNP~~~~--~Ag~LIe~~GlKG~~ 246 (297)
T PRK14653 173 SIF--KEEKDL-IILRVTFKLKKGNKNEIYNLMLETMKK-RVEKQPLEFPSAGSVFKRPRKDF--YVGSAIEKLGLKGFS 246 (297)
T ss_pred ccC--CCCCcE-EEEEEEEEEecCCHHHHHHHHHHHHHH-HHhhCCCCCCCccceecCCCCCC--cHHHHHHHcCCCCCc
Confidence 433 444454 99999999999755433222 222332 23334455677778877764222 245799999999999
Q ss_pred EeecCCCCeeEEEEeCCCChHHHHHHHHHHHHHHHHHHhcCCe
Q 011962 380 IAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGT 422 (474)
Q Consensus 380 ~gh~~~g~~h~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~gG~ 422 (474)
+|.++.+..|+||++|.+.++. +++.+|++.+.++|.+..|.
T Consensus 247 iG~a~vS~kHanfiVN~g~Ata-~Dv~~Li~~v~~~V~~~~Gi 288 (297)
T PRK14653 247 IGGAQISEKHAGFIINYNNAKA-EDVLKLIEYVKDKIYENYNV 288 (297)
T ss_pred cCCEEEccccCcEEEECCCCCH-HHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999987665 78999999999999887654
No 22
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.96 E-value=1.4e-28 Score=250.06 Aligned_cols=260 Identities=16% Similarity=0.122 Sum_probs=204.7
Q ss_pred CcccCCCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCC---cEEEEcCCCCCcEEeecCCCeEec
Q 011962 143 SFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG---GVCIDLSLMKSVKALHIEDMDVVV 219 (474)
Q Consensus 143 ~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~---givIdl~~m~~i~~id~~~~~v~V 219 (474)
+++++++.|++++.|+|++||++++++|+++++|+.++|+|||+ +..|+ |++|+++ ++.+. ++.++.+|+|
T Consensus 25 tt~~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNl----Lv~D~g~~GvVI~l~-~~~i~-i~~~~~~v~v 98 (363)
T PRK13903 25 TTLRVGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNL----VIADDGFDGTVVRVA-TRGVT-VDCGGGLVRA 98 (363)
T ss_pred cEeecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeE----eECCCCccEEEEEeC-CCcEE-EeCCCCEEEE
Confidence 44589999999999999999999999999999999999999998 44444 7999997 57775 6655779999
Q ss_pred CCCCcHHHHHHHHccCCCe-eCCCCCCCceecccccccccCCCcccccc-ccceEEEEEEEecC-CeEEEcccccccCcC
Q 011962 220 EPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLAN-GDVVKTASRARKSAA 296 (474)
Q Consensus 220 ~aGv~~~~L~~~l~~~Gl~-~~~~~~~~~tvGG~i~~~~~G~~s~~yG~-~~d~V~~~~vVl~d-G~i~~~~~~~~~~~~ 296 (474)
+||+.|.+|.+++.++||. ++...++++||||++.|| ++.||. +.|.|.++++++.+ |++++....
T Consensus 99 gAG~~~~~l~~~a~~~GL~GlE~laGIPGTVGGAv~mN-----aGayG~ei~D~l~sV~vvd~~~G~~~~~~~~------ 167 (363)
T PRK13903 99 EAGAVWDDVVARTVEAGLGGLECLSGIPGSAGATPVQN-----VGAYGQEVSDTITRVRLLDRRTGEVRWVPAA------ 167 (363)
T ss_pred EcCCCHHHHHHHHHHcCCccccccCCCCcchhhHhhcC-----CChhHHHHhhhEeEEEEEECCCCEEEEEEHH------
Confidence 9999999999999999999 999999999999999999 778887 89999999999965 999987543
Q ss_pred CCchhhhhhcc---CCCeeEEEEEEEEeEecCc--------------------hhH-HHHHHHHHHHhcC---CCcc--c
Q 011962 297 GYDLTRLIIGS---EGTLGIITEVTLRLQKIPQ--------------------HSV-MRKEALWACFAME---PSFE--A 347 (474)
Q Consensus 297 g~dl~~~~~Gs---~G~lGIIt~~tlkl~p~p~--------------------~~~-~~~~~~w~~~~~~---~~~~--~ 347 (474)
|+.|..|+| .+..+|||+++|++.|... ... ...+.++..+... |.+. .
T Consensus 168 --el~f~YR~S~f~~~~~~IIl~a~f~L~~~~~~~~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~R~~kqplpdP~~~~ 245 (363)
T PRK13903 168 --DLGFGYRTSVLKHSDRAVVLEVEFQLDPSGLSAPLRYGELARALGVEPGERVPPAAVREAVLALRAGKGMVLDPADHD 245 (363)
T ss_pred --HcceeccccccCCCCCEEEEEEEEEEEcCCcccccchHHHHhhhhhccccchhHHHHHHHHHHHHHhcCCCCCcccCC
Confidence 444555554 2247899999999998741 111 1122333333322 2222 3
Q ss_pred ccccccccchhH---------------------HHHH-------HHHHHHhhcCCC-eEE--EEeecCCCCeeEEEEeCC
Q 011962 348 MISDVCVPLSCL---------------------AELI-------SRSKKELDASPL-ICT--VIAHAGDGNFHTVILFDP 396 (474)
Q Consensus 348 ~~~d~~vp~~~l---------------------~~~~-------~~~~~~~~~~~l-~~~--~~gh~~~g~~h~~~~~~~ 396 (474)
+....+++.+.. +.+. -.+..+|++.|+ ++. .+|.++.+..|+||++|.
T Consensus 246 ~psaGS~FKNP~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~Ag~LIe~~Gl~KG~~~~iG~a~vS~kHanfiVN~ 325 (363)
T PRK13903 246 TWSAGSFFTNPVVSPAVAERLAARVAERLGDPVPRYPAGDGGVKLSAAWLIERAGFGKGYPGGGAPARLSTKHTLALTNR 325 (363)
T ss_pred CCCceeeEeCCCCCHHHHHHHHHhhccccCCCCCCccCCCCceeeeHHHHHHHhCcccCCcCccCCEEEccccCcEEEEC
Confidence 456666666552 1110 034578999999 999 999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHhcCCe
Q 011962 397 SKEEDRQEAERLNRFMVHTALSMEGT 422 (474)
Q Consensus 397 ~~~~~~~~~~~l~~~i~~~~~~~gG~ 422 (474)
+.++. +++.+|++.+.+.|.+..|.
T Consensus 326 G~Ata-~dvl~Li~~v~~~V~~~fGi 350 (363)
T PRK13903 326 GGATT-ADLVALAREVRDGVRDAFGV 350 (363)
T ss_pred CCCCH-HHHHHHHHHHHHHHHHHHCC
Confidence 87665 78999999999999887654
No 23
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.96 E-value=1.2e-28 Score=245.54 Aligned_cols=266 Identities=17% Similarity=0.137 Sum_probs=207.9
Q ss_pred CcccCCCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCCcEEEEcCCCC-CcEEeecCCCeEecCC
Q 011962 143 SFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMK-SVKALHIEDMDVVVEP 221 (474)
Q Consensus 143 ~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~givIdl~~m~-~i~~id~~~~~v~V~a 221 (474)
+++++++.+++++.|+|++|+++++++|+++++|+.++|+|||+....-. .+|++|++++|+ .+. .+.++.+++|+|
T Consensus 13 tt~~iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g-~~GvVI~l~~~~~~i~-~~~~~~~v~v~A 90 (295)
T PRK14649 13 TSWRIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEG-FDGLVARYRGQRWELH-EHGDTAEVWVEA 90 (295)
T ss_pred cEeeeCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCC-cCeEEEEecCCCcEEE-EeCCcEEEEEEc
Confidence 45599999999999999999999999999999999999999998322211 248999998754 543 444444899999
Q ss_pred CCcHHHHHHHHccCCCe-eCCCCCCCceecccccccccCCCcccccc-ccceEEEEEEEecCCeEEEcccccccCcCCCc
Q 011962 222 GIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLANGDVVKTASRARKSAAGYD 299 (474)
Q Consensus 222 Gv~~~~L~~~l~~~Gl~-~~~~~~~~~tvGG~i~~~~~G~~s~~yG~-~~d~V~~~~vVl~dG~i~~~~~~~~~~~~g~d 299 (474)
|+.|.+|..++.++||. ++...++++||||++.|| ++.||. ++|.|.++++++.+|++++...+ +..++|+
T Consensus 91 G~~~~~l~~~~~~~GL~GlE~l~GIPGTvGGa~~mN-----aGayg~ei~d~l~~V~~~~~~g~~~~~~~~--el~f~YR 163 (295)
T PRK14649 91 GAPMAGTARRLAAQGWAGLEWAEGLPGTIGGAIYGN-----AGCYGGDTATVLIRAWLLLNGSECVEWSVH--DFAYGYR 163 (295)
T ss_pred CCcHHHHHHHHHHcCCccccccCCCCcchhHHHHhh-----ccccceEhheeEEEEEEEeCCCCEEEEeHH--HcCcccc
Confidence 99999999999999999 999999999999999999 778876 99999999999999999988554 5668888
Q ss_pred hhhhhhccCCC----eeEEEEEEEEeEecCchhHHHHHHHHHHHhcCCCcccccccccccchhHHHHHHHHHHHhhcCCC
Q 011962 300 LTRLIIGSEGT----LGIITEVTLRLQKIPQHSVMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPL 375 (474)
Q Consensus 300 l~~~~~Gs~G~----lGIIt~~tlkl~p~p~~~~~~~~~~w~~~~~~~~~~~~~~d~~vp~~~l~~~~~~~~~~~~~~~l 375 (474)
-+.+.....+. -.||++++|++.|..+..+.+....+...+...++. .....+++.++ +.. .+.++|++.|+
T Consensus 164 ~S~~~~~~~~~~~~~~~ii~~~~~~l~~~~~~~i~~~~~~~~~~R~~kqP~-~~saGS~FkNP-~~~--~Ag~LIe~~Gl 239 (295)
T PRK14649 164 TSVLKQLRADGITWRPPLVLAARFRLHRDDPTALAARMEAIAAERKQKTPA-GSSCGSVFKNP-PGD--SAGRLIEAAGL 239 (295)
T ss_pred eeecccccccccccCCeEEEEEEEEECCCCHHHHHHHHHHHHHHHHHcCcC-CCCeEEEEeCC-Ccc--cHHHHHHHcCC
Confidence 65443211111 149999999999876544322222233233233333 35566666655 222 45689999999
Q ss_pred eEEEEeecCCCCeeEEEEeCCCChHHHHHHHHHHHHHHHHHHhcCCe
Q 011962 376 ICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGT 422 (474)
Q Consensus 376 ~~~~~gh~~~g~~h~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~gG~ 422 (474)
++..+|.++.+..|+||++|.+.++. +++.+|++.+.+.|.+..|.
T Consensus 240 KG~~~G~a~vS~kHanfivN~g~Ata-~di~~Li~~v~~~V~~~~Gi 285 (295)
T PRK14649 240 KGTRIGDAEIATRHANYIINLGGARA-ADILRLIDLARTRVLAQFGI 285 (295)
T ss_pred CCCcccCEEEccccCcEEEECCCCCH-HHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999987665 78999999999999887553
No 24
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=4.6e-28 Score=236.56 Aligned_cols=261 Identities=17% Similarity=0.242 Sum_probs=221.9
Q ss_pred CcccCCCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCC---cEEEEcCCCCCcEEeecCCCeEec
Q 011962 143 SFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG---GVCIDLSLMKSVKALHIEDMDVVV 219 (474)
Q Consensus 143 ~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~---givIdl~~m~~i~~id~~~~~v~V 219 (474)
+++++++.++.++.|++++|+.++++++.+.++|+.+.|+|+|+ +..|+ +++|.+.+++.+. ++.++.+++|
T Consensus 13 ttfriGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNl----Lv~d~g~~gvvi~~~~~~~~~-~~~~~~~i~a 87 (291)
T COG0812 13 TTFRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNL----LVRDGGIGGVVIKLGKLNFIE-IEGDDGLIEA 87 (291)
T ss_pred eeEecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceE----EEecCCCceEEEEccccccee-eeccCCeEEE
Confidence 45699999999999999999999999999999999999999997 55444 7889888777765 6666669999
Q ss_pred CCCCcHHHHHHHHccCCCe-eCCCCCCCceecccccccccCCCcccccc-ccceEEEEEEEecCCeEEEcccccccCcCC
Q 011962 220 EPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLANGDVVKTASRARKSAAG 297 (474)
Q Consensus 220 ~aGv~~~~L~~~l~~~Gl~-~~~~~~~~~tvGG~i~~~~~G~~s~~yG~-~~d~V~~~~vVl~dG~i~~~~~~~~~~~~g 297 (474)
++|+.|.+|..++.++||. |+...++|+||||++.|| ++.||. ++|.+.++++++.+|++.+...+ +..++
T Consensus 88 ~aG~~~~~l~~~~~~~gl~GlE~l~gIPGsvGgav~mN-----aGAyG~Ei~d~~~~v~~ld~~G~~~~l~~~--el~f~ 160 (291)
T COG0812 88 GAGAPWHDLVRFALENGLSGLEFLAGIPGSVGGAVIMN-----AGAYGVEISDVLVSVEVLDRDGEVRWLSAE--ELGFG 160 (291)
T ss_pred ccCCcHHHHHHHHHHcCCcchhhhcCCCcccchhhhcc-----CcccccchheeEEEEEEEcCCCCEEEEEHH--HhCcc
Confidence 9999999999999999999 999999999999999999 889999 99999999999999999998655 55688
Q ss_pred CchhhhhhccCCCeeEEEEEEEEeEecCchhHHHHHHHHHHHhcCCCcccccccccccchhHHHHHHHHHHHhhcCCCeE
Q 011962 298 YDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLIC 377 (474)
Q Consensus 298 ~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~~~~~~~w~~~~~~~~~~~~~~d~~vp~~~l~~~~~~~~~~~~~~~l~~ 377 (474)
|+-+.+-.. ..||++++|+|.|..+..+..+...-...+..+++....+..+++.++...+ +.++|+++|+++
T Consensus 161 YR~S~f~~~----~~vvl~v~f~L~~~~~~~I~~~~~~ir~~R~~~qP~~~ps~GS~FKNP~~~~---Ag~LIe~aGLKG 233 (291)
T COG0812 161 YRTSPFKKE----YLVVLSVEFKLTKGDPEDILAAMCAIRRRRELKQPIDLPSAGSFFKNPVGDF---AGWLIEEAGLKG 233 (291)
T ss_pred cccCcCCCC----CEEEEEEEEEeCCCCHHHHHHHHHHHHHhhccCCCCcCCCCCccccCCCcch---HHHHHHHcCCCC
Confidence 886655221 2899999999999744443333333334444577777888889988886665 668999999999
Q ss_pred EEEeecCCCCeeEEEEeCCCChHHHHHHHHHHHHHHHHHHhcCCee
Q 011962 378 TVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTC 423 (474)
Q Consensus 378 ~~~gh~~~g~~h~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~gG~~ 423 (474)
+.+|.++.+..|+||++|.++++. +++..|++.+.++|.+..|..
T Consensus 234 ~~iGgA~vs~kHanflIN~g~ATa-~Dv~~Li~~Vr~~V~e~fGi~ 278 (291)
T COG0812 234 YRIGGAQVSEKHANFLINTGNATA-KDVLDLIEHVRQRVLEKFGIE 278 (291)
T ss_pred CccCCEEechhhCcEEEECCCCcH-HHHHHHHHHHHHHHHHhhCce
Confidence 999999999999999999998876 789999999999998886644
No 25
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.95 E-value=7.1e-28 Score=238.79 Aligned_cols=260 Identities=16% Similarity=0.193 Sum_probs=211.3
Q ss_pred CcccCCCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCC----cEEEEcCCCCCcEEeecCCCeEe
Q 011962 143 SFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG----GVCIDLSLMKSVKALHIEDMDVV 218 (474)
Q Consensus 143 ~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~----givIdl~~m~~i~~id~~~~~v~ 218 (474)
+++++++.++.++.|+|++|+++++++++++++|+.+.|+|||+ +..|+ |++|.+.+|+.+. ++ +..++
T Consensus 25 tt~~iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNl----Lv~D~g~~~g~vi~~~~~~~i~-~~--~~~v~ 97 (302)
T PRK14650 25 TTYKIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNI----LINDEEEIDFPIIYTGHLNKIE-IH--DNQIV 97 (302)
T ss_pred ceeeeCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEE----EEECCCccceEEEEECCcCcEE-Ee--CCEEE
Confidence 44599999999999999999999999999999999999999998 55555 4788886688875 43 35799
Q ss_pred cCCCCcHHHHHHHHccCCCe-eCCCCCCCceecccccccccCCCcccccc-ccceEEEEEEEecCCeEEEcccccccCcC
Q 011962 219 VEPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLANGDVVKTASRARKSAA 296 (474)
Q Consensus 219 V~aGv~~~~L~~~l~~~Gl~-~~~~~~~~~tvGG~i~~~~~G~~s~~yG~-~~d~V~~~~vVl~dG~i~~~~~~~~~~~~ 296 (474)
|+||+.|.+|..++.++||. +++..++|+||||++.|| ++.||. ++|.|.++++++.+|++++...+ +..+
T Consensus 98 a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mN-----AGayG~ei~d~l~sV~~~d~~g~~~~~~~~--e~~f 170 (302)
T PRK14650 98 AECGTNFEDLCKFALQNELSGLEFIYGLPGTLGGAIWMN-----ARCFGNEISEILDKITFIDEKGKTICKKFK--KEEF 170 (302)
T ss_pred EEeCCcHHHHHHHHHHcCCchhhhhcCCCcchhHHHHhh-----CCccccchheeEEEEEEEECCCCEEEEEHH--HcCc
Confidence 99999999999999999999 999999999999999999 889997 99999999999999999877544 5668
Q ss_pred CCchhhhhhccCCCeeEEEEEEEEeEecCchhHHHHHHHHHHHhcCCCcccccccccccchhHHHHHHHHHHHhhcCCCe
Q 011962 297 GYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLI 376 (474)
Q Consensus 297 g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~~~~~~~w~~~~~~~~~~~~~~d~~vp~~~l~~~~~~~~~~~~~~~l~ 376 (474)
+|+-+.+-. . -.||++++|++.|.++..+..........+...++..+....+++.++.. +...+.++|++.|++
T Consensus 171 ~YR~S~f~~--~--~~iIl~a~f~L~~~~~~~i~~~~~~~~~~R~~kqP~~~psaGS~FKNP~~-~~~~Ag~LIe~aGlK 245 (302)
T PRK14650 171 KYKISPFQN--K--NTFILKATLNLKKGNKKHIEEIMKQNKQIRINKGHYLFPSSGSTFKNNKA-FLKPTGQIIEECKLK 245 (302)
T ss_pred ccccccCCC--C--CEEEEEEEEEEcCCCHHHHHHHHHHHHHHHhcCCcCCCCCcccceECCCC-CccchHHHHHHcCCC
Confidence 888665421 1 26999999999997654432222222223333455566777888766632 211346799999999
Q ss_pred EEEEeecCCCCeeEEEEeCCCChHHHHHHHHHHHHHHHHHHhcCCe
Q 011962 377 CTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGT 422 (474)
Q Consensus 377 ~~~~gh~~~g~~h~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~gG~ 422 (474)
+..+|.++.+..|+||++|.+.++. +++.+|++.+.+.|.+..|.
T Consensus 246 G~riG~A~VS~kHanfIVN~G~Ata-~Dil~Li~~v~~~V~~~~GI 290 (302)
T PRK14650 246 GLSIGGATVSHYHGNFIININNATS-KDIKTLIEKVKTEVQIKTGF 290 (302)
T ss_pred CCccCCEEEccccccEEEECCCCCH-HHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999987665 78999999999999887653
No 26
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.95 E-value=3.5e-28 Score=216.52 Aligned_cols=136 Identities=39% Similarity=0.662 Sum_probs=126.6
Q ss_pred CCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHHH
Q 011962 151 PDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNE 230 (474)
Q Consensus 151 P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~~ 230 (474)
|.+|++|+|++||++++++|+++++|+.++|+||++.+.+. .+++++|||++||+|+++|+++++++|+||++|.||++
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~-~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~ 79 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSS-DEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYE 79 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTS-STTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccc-cCCcEEEeeccccccccccccceeEEEeccccchhccc
Confidence 78999999999999999999999999999999999987665 46799999999999989999999999999999999999
Q ss_pred HHccCCCeeCC--CCCCCceecccccccccCCCccccccccceEEEEEEEecCCeEEEc
Q 011962 231 YLEPYGLFFPL--DPGPGATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKT 287 (474)
Q Consensus 231 ~l~~~Gl~~~~--~~~~~~tvGG~i~~~~~G~~s~~yG~~~d~V~~~~vVl~dG~i~~~ 287 (474)
+|.++|+.++. ..+.++||||++++|++|+.+..||...|+|+++++|++||+++++
T Consensus 80 ~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~~ 138 (139)
T PF01565_consen 80 ALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVRC 138 (139)
T ss_dssp HHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEEE
T ss_pred ccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEEe
Confidence 99999999875 4455799999999999999999999999999999999999999986
No 27
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.94 E-value=2.7e-26 Score=230.76 Aligned_cols=266 Identities=17% Similarity=0.142 Sum_probs=207.5
Q ss_pred CcccCCCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCC--CcEEEEcCCCCCcEEeecCC--CeEe
Q 011962 143 SFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPN--GGVCIDLSLMKSVKALHIED--MDVV 218 (474)
Q Consensus 143 ~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~--~givIdl~~m~~i~~id~~~--~~v~ 218 (474)
+++++++.++.++.|.|++|+++++++|+++++|+.+.|+|||+ +..| .|++|.+ +|+.+..++.++ ..|+
T Consensus 13 tt~riGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNl----Lv~D~~~g~vI~~-~~~~~~~~~~~~~~~~v~ 87 (334)
T PRK00046 13 NTFGIDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNV----LFTEDFDGTVLLN-RIKGIEVLSEDDDAWYLH 87 (334)
T ss_pred ceeccCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEE----EECCCCCEEEEEe-cCCceEEEecCCCeEEEE
Confidence 45599999999999999999999999999999999999999998 3333 4788887 488875222232 2799
Q ss_pred cCCCCcHHHHHHHHccCCCe-eCCCCCCCceecccccccccCCCcccccc-ccceEEEEEEEecC-CeEEEcccccccCc
Q 011962 219 VEPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLAN-GDVVKTASRARKSA 295 (474)
Q Consensus 219 V~aGv~~~~L~~~l~~~Gl~-~~~~~~~~~tvGG~i~~~~~G~~s~~yG~-~~d~V~~~~vVl~d-G~i~~~~~~~~~~~ 295 (474)
|+||+.|.+|.+++.++||. ++...++|+||||++.|| ++.||. ++|.|.++++++.+ |++++...+ +..
T Consensus 88 a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mN-----aGayG~ei~d~l~~V~v~d~~~g~~~~~~~~--e~~ 160 (334)
T PRK00046 88 VGAGENWHDLVLWTLQQGMPGLENLALIPGTVGAAPIQN-----IGAYGVELKDVCDYVEALDLATGEFVRLSAA--ECR 160 (334)
T ss_pred EEcCCcHHHHHHHHHHcCchhhHHhcCCCcchhHHHHhc-----CCcCcccHheeEEEEEEEECCCCcEEEEEHH--HcC
Confidence 99999999999999999999 999999999999999999 889997 99999999999987 999887554 566
Q ss_pred CCCchhhhhhccCCCeeEEEEEEEEeEec--------Cchh-------H-HHHHHHHHHHhc-CCCcccccccccccchh
Q 011962 296 AGYDLTRLIIGSEGTLGIITEVTLRLQKI--------PQHS-------V-MRKEALWACFAM-EPSFEAMISDVCVPLSC 358 (474)
Q Consensus 296 ~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~--------p~~~-------~-~~~~~~w~~~~~-~~~~~~~~~d~~vp~~~ 358 (474)
++|+-+.+-.. .-.-.||++++|+|.|. .... + ...+..+..+.. .|++..+....+++.++
T Consensus 161 f~YR~S~f~~~-~~~~~iVl~a~f~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~k~P~p~~~psaGS~FkNP 239 (334)
T PRK00046 161 FGYRDSIFKHE-YPDRYAITAVGFRLPKQWQPVLDYGDLARLDPDTVTAQDVFDAVCAIRRSKLPDPKVLGNAGSFFKNP 239 (334)
T ss_pred cccccccCCCC-CcCCEEEEEEEEEecCCCCccccccCHhhhcccCCCHHHHHHHHHHHHHhcCCCCCCCCCCcccccCC
Confidence 88886655321 00126999999999886 2111 1 112233333322 33334556677777666
Q ss_pred H--HHHH---------------------HHHHHHhhcCCCeEEEEeecCCCCeeEEEEeCCCChHHHHHHHHHHHHHHHH
Q 011962 359 L--AELI---------------------SRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHT 415 (474)
Q Consensus 359 l--~~~~---------------------~~~~~~~~~~~l~~~~~gh~~~g~~h~~~~~~~~~~~~~~~~~~l~~~i~~~ 415 (474)
. .+.+ ..+.++|++.|+++..+|.++.+..|+||++|.+.++. +++.+|++.+.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~Ag~LIe~~GLKG~~iG~A~VS~kHanfIVN~G~Ata-~Di~~Li~~v~~~ 318 (334)
T PRK00046 240 VVSAEQFEALLAQYPDIPHYPQADGSVKLAAGWLIDQCGLKGFQIGGAAVHEKQALVLVNYGNATG-ADVLALARHIQQD 318 (334)
T ss_pred CCcHHHHHHHHhhcCCCCCcccCCCceeeeHHHHHHHcCCCCCccCCEEEccccCcEEEECCCCCH-HHHHHHHHHHHHH
Confidence 3 1110 13568999999999999999999999999999887665 7899999999999
Q ss_pred HHhcCCe
Q 011962 416 ALSMEGT 422 (474)
Q Consensus 416 ~~~~gG~ 422 (474)
|.+..|.
T Consensus 319 V~e~fGI 325 (334)
T PRK00046 319 VREKFGV 325 (334)
T ss_pred HHHHHCC
Confidence 9887654
No 28
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.94 E-value=7.7e-26 Score=227.28 Aligned_cols=172 Identities=24% Similarity=0.286 Sum_probs=153.0
Q ss_pred CCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHH
Q 011962 150 IPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELN 229 (474)
Q Consensus 150 ~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~ 229 (474)
.++-|-+|+|++|+.++|+.|++++.++++.|.|||..+..+. +|.+|++++||+++++|++..+||||+|+++.||.
T Consensus 49 ~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ct--dg~lisl~~lnkVv~~dpe~~tvTV~aGirlrQLi 126 (518)
T KOG4730|consen 49 KAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCT--DGLLISLDKLNKVVEFDPELKTVTVQAGIRLRQLI 126 (518)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceec--cccEEEhhhhccceeeCchhceEEeccCcCHHHHH
Confidence 5677899999999999999999999999999999999776654 47999999999999999999999999999999999
Q ss_pred HHHccCCCeeCCCCCC-CceecccccccccCCCccccccccceEEEEEEEecCCeEEEcccccccCcCCCchhhhhhccC
Q 011962 230 EYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLAVRYGTMRDNVINLKVVLANGDVVKTASRARKSAAGYDLTRLIIGSE 308 (474)
Q Consensus 230 ~~l~~~Gl~~~~~~~~-~~tvGG~i~~~~~G~~s~~yG~~~d~V~~~~vVl~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~ 308 (474)
+++.+.||++|..+.+ ..+|||++++++||+...-++.....++...++.+||.++.++.. ..+++|.+.+.|.
T Consensus 127 e~~~~~GlsL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e-----~dpe~F~AAkvSL 201 (518)
T KOG4730|consen 127 EELAKLGLSLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEE-----KDPELFNAAKVSL 201 (518)
T ss_pred HHHHhcCccccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEeccc-----CCHHHHhhhhhcc
Confidence 9999999999998877 799999999999999655466666677777777889998887544 4579999999999
Q ss_pred CCeeEEEEEEEEeEecCchh
Q 011962 309 GTLGIITEVTLRLQKIPQHS 328 (474)
Q Consensus 309 G~lGIIt~~tlkl~p~p~~~ 328 (474)
|.||||.++||++.|.-+..
T Consensus 202 G~LGVIs~VTl~~vp~Fk~s 221 (518)
T KOG4730|consen 202 GVLGVISQVTLSVVPAFKRS 221 (518)
T ss_pred cceeEEEEEEEEEEecceee
Confidence 99999999999999986543
No 29
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.94 E-value=2.9e-26 Score=230.28 Aligned_cols=264 Identities=15% Similarity=0.178 Sum_probs=206.2
Q ss_pred CcccCCCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCC---cEEEEcCCCCCcEEee--cCC-Ce
Q 011962 143 SFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG---GVCIDLSLMKSVKALH--IED-MD 216 (474)
Q Consensus 143 ~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~---givIdl~~m~~i~~id--~~~-~~ 216 (474)
+++++++.++.++.|+|.+|+++++++++++++|+.+.|+|+|+ +..|+ |++|.+.+|+.+. +. .++ ..
T Consensus 22 tT~rIGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNl----L~~D~g~~G~VI~l~~~~~i~-i~~~~~~~~~ 96 (354)
T PRK14648 22 CSFRIGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNV----LIADEGVPGLMLSLRRFRSLH-TQTQRDGSVL 96 (354)
T ss_pred ceeeeCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEE----EEeCCCccEEEEEeCCcCceE-EeeccCCcEE
Confidence 44599999999999999999999999999999999999999998 55444 8999986688875 31 233 47
Q ss_pred EecCCCCcHHHHHHHHccCCCe-eCCCCCCCceecccccccccCCCcccccc-ccceEEEEEEE----------------
Q 011962 217 VVVEPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVV---------------- 278 (474)
Q Consensus 217 v~V~aGv~~~~L~~~l~~~Gl~-~~~~~~~~~tvGG~i~~~~~G~~s~~yG~-~~d~V~~~~vV---------------- 278 (474)
++|++|+.|.+|..++.++||. ++...++|+||||++.|| ++.||. +.|.|.+++++
T Consensus 97 v~agAG~~~~~Lv~~~~~~gl~GlE~laGIPGTVGGAv~mN-----AGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~ 171 (354)
T PRK14648 97 VHAGAGLPVAALLAFCAHHALRGLETFAGLPGSVGGAAYMN-----ARCYGRAIADCFHSARTLVLHPVRSRAKELPEVR 171 (354)
T ss_pred EEEEeCCcHHHHHHHHHHcCCcchhhhcCCCcchhhHhhhc-----CCccceEhhheEEEEEEEeccCcccccccccccc
Confidence 9999999999999999999999 999999999999999999 889998 99999999999
Q ss_pred ----ecCCeE-------------EEcccccccCcCCCchhhhhhccCC----CeeEEEEEEEEeEecCchhHHHH-HHHH
Q 011962 279 ----LANGDV-------------VKTASRARKSAAGYDLTRLIIGSEG----TLGIITEVTLRLQKIPQHSVMRK-EALW 336 (474)
Q Consensus 279 ----l~dG~i-------------~~~~~~~~~~~~g~dl~~~~~Gs~G----~lGIIt~~tlkl~p~p~~~~~~~-~~~w 336 (474)
+.+|++ .+... .+..++|+-+.+...... .-.||++++|+|.|.++..+... ....
T Consensus 172 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~~~~i~~~m~~~~ 249 (354)
T PRK14648 172 KNAQDKRGECLGLDGGPFTCSSFQTVFA--RAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGNPAQIRKHMQEKI 249 (354)
T ss_pred cccccCCCceecccccccccccceEecH--HHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCCHHHHHHHHHHHH
Confidence 566776 33322 245688887655321100 02599999999998865443221 1222
Q ss_pred HHHhcCCCcccccccccccchhHH-HHHHHHHHHhhcCCCeEEEEeecCCCCeeEEEEeCCCChHHHHHHHHHHHHHHHH
Q 011962 337 ACFAMEPSFEAMISDVCVPLSCLA-ELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHT 415 (474)
Q Consensus 337 ~~~~~~~~~~~~~~d~~vp~~~l~-~~~~~~~~~~~~~~l~~~~~gh~~~g~~h~~~~~~~~~~~~~~~~~~l~~~i~~~ 415 (474)
..+ ...++..+....+++.++-. .. .+.++|++.|+++..+|.++.+..|+||++|.+.++. +++.+|++.+.+.
T Consensus 250 ~~R-~~kqP~~~psaGS~FKNP~~~~~--~AG~LIe~~GLKG~riG~A~VS~kHAnfIVN~G~Ata-~Dvl~Li~~v~~~ 325 (354)
T PRK14648 250 ADR-ISKGQFRFPSAGSAFKNNPAFGK--PSGILIEEAGLRGTSCGAAQVAPWHGNLIINTGNATA-HQVRTLLRVVRQR 325 (354)
T ss_pred HHH-HHcCcCCCCCcceeEeCcCCCCC--cHHHHHHHcCCCCCccCCEEEccccCcEEEECCCCCH-HHHHHHHHHHHHH
Confidence 222 22334455667777776620 11 3568999999999999999999999999999987665 7889999999999
Q ss_pred HHhcCCe
Q 011962 416 ALSMEGT 422 (474)
Q Consensus 416 ~~~~gG~ 422 (474)
|.+..|.
T Consensus 326 V~ekfGI 332 (354)
T PRK14648 326 VFETHGV 332 (354)
T ss_pred HHHHHCC
Confidence 9887553
No 30
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.91 E-value=6.2e-24 Score=207.91 Aligned_cols=237 Identities=17% Similarity=0.148 Sum_probs=190.8
Q ss_pred CcccCCCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCC---cEEEEcCC-CCCcEEeecCCCeEe
Q 011962 143 SFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG---GVCIDLSL-MKSVKALHIEDMDVV 218 (474)
Q Consensus 143 ~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~---givIdl~~-m~~i~~id~~~~~v~ 218 (474)
+++++++.++.++ |+|++|+++++ ++|+.+.|+|||+ +..|+ |++|.+.+ ++.+. + ++ +
T Consensus 13 tt~riGG~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNl----L~~D~g~~g~vI~l~~~~~~~~-~--~~---~ 75 (273)
T PRK14651 13 TTLGVGGPAELWT-VETHEQLAEAT------EAPYRVLGGGSNL----LVSDAGVPERVIRLGGEFAEWD-L--DG---W 75 (273)
T ss_pred cEeecCceEEEEe-cCCHHHHHHHH------CCCeEEEeceeEE----EEcCCCcceEEEEECCcceeEe-E--CC---E
Confidence 4458999999999 99999999988 4899999999998 55543 78888754 45442 2 33 6
Q ss_pred cCCCCcHHHHHHHHccCCCe-eCCCCCCCceecccccccccCCCcccccc-ccceEEEEEEEecCCeEEEcccccccCcC
Q 011962 219 VEPGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLANGDVVKTASRARKSAA 296 (474)
Q Consensus 219 V~aGv~~~~L~~~l~~~Gl~-~~~~~~~~~tvGG~i~~~~~G~~s~~yG~-~~d~V~~~~vVl~dG~i~~~~~~~~~~~~ 296 (474)
|+||+.|.+|.+++.++||. +++..++|+||||++.|| ++.||. ++|.|.++++++ +|++.+...+ +..+
T Consensus 76 a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGTVGGAv~mN-----aGayG~ei~d~l~~V~~~~-~g~~~~~~~~--e~~f 147 (273)
T PRK14651 76 VGGGVPLPGLVRRAARLGLSGLEGLVGIPAQVGGAVKMN-----AGTRFGEMADALHTVEIVH-DGGFHQYSPD--ELGF 147 (273)
T ss_pred EECCCcHHHHHHHHHHCCCcchhhhcCCCcchhhHHHhh-----CCccccChheeEEEEEEEE-CCCEEEEEHH--Hccc
Confidence 99999999999999999998 999999999999999999 888987 999999999997 8999987554 5668
Q ss_pred CCchhhhhhccCCCeeEEEEEEEEeEecCchhHHHH-HHHHHHHhcCCCcccccccccccchhHHHHHHHHHHHhhcCCC
Q 011962 297 GYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSVMRK-EALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPL 375 (474)
Q Consensus 297 g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~~~~-~~~w~~~~~~~~~~~~~~d~~vp~~~l~~~~~~~~~~~~~~~l 375 (474)
+|+-+.+- . -.||++++|++.|.....+... ...+..+. +++ ......+++.++ ++. .+.++|++.|+
T Consensus 148 ~YR~S~~~----~-~~iIl~a~f~l~~~~~~~i~~~~~~~~~~R~--~qP-~~psaGS~FKNP-~~~--~Ag~LIe~~GL 216 (273)
T PRK14651 148 GYRHSGLP----P-GHVVTRVRLKLRPSTPEAVLAKMALVDAARK--GQP-KKKSAGCAFKNP-PGD--SAGRLIDEAGL 216 (273)
T ss_pred cccccCCC----C-CEEEEEEEEEECCCCHHHHHHHHHHHHHHhc--CCc-cCCCCcceEeCc-CCC--cHHHHHHHhCC
Confidence 88876542 1 2699999999999765543222 22333333 555 557778887776 332 34689999999
Q ss_pred eEEEEeecCCCCeeEEEEeCCCChHHHHHHHHHHHHHHHHH
Q 011962 376 ICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTA 416 (474)
Q Consensus 376 ~~~~~gh~~~g~~h~~~~~~~~~~~~~~~~~~l~~~i~~~~ 416 (474)
++..+|.++.+..|+||++|.+.++. +++.+|++.+.+++
T Consensus 217 KG~~iGgA~vS~kHanFIVN~G~Ata-~Dil~Li~~v~~~v 256 (273)
T PRK14651 217 KGTRVGDAMISPEHGNFIVNLGGATA-ADVHALLRRVRARV 256 (273)
T ss_pred CCCccCCEEEccccccEEEECCCCCH-HHHHHHHHHHHHHH
Confidence 99999999999999999999987665 78899999988776
No 31
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=99.87 E-value=2.3e-22 Score=194.41 Aligned_cols=122 Identities=43% Similarity=0.623 Sum_probs=113.4
Q ss_pred ccccccccccchhHHHHHHHHHHHhhcCCCeEEEEeecCCCCeeEEEEeCCCChHHHHHHHHHHHHHHHHHHhcCCeeee
Q 011962 346 EAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTG 425 (474)
Q Consensus 346 ~~~~~d~~vp~~~l~~~~~~~~~~~~~~~l~~~~~gh~~~g~~h~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~gG~~s~ 425 (474)
..+..|+++|+++++++++.+++++++.++....+||+++|++|++++++..++++.+.++++.+.+.+.+.++||++++
T Consensus 127 ~~~~~dv~vp~~~l~~~~~~~~~~~~~~~~~~~~~gH~~~g~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~is~ 206 (248)
T PF02913_consen 127 VWDTEDVAVPPSRLPEFLREIRALLREYGLEVCHFGHAGDGNLHLYILFDPRDPEEPERAEALWDELYELVLELGGSISA 206 (248)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHHHHCTEEEEEEEEEEECEEEEEEEEETTSHHHHHHHHHHHHHHHHHHHHTT-BBSS
T ss_pred ceeeeeecccchhhhhHHHhhhhhhhhccccccceEEccCCeEEEEeecccchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 45678999999999999999999999999999999999999999999999888888889999999999999999999999
Q ss_pred cCCCCcchHHHHHHhcCHHHHHHHHHHHHhcCCCCCCCCCCe
Q 011962 426 EHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKL 467 (474)
Q Consensus 426 ehg~G~~~~~~l~~~~g~~~~~~l~~iK~~~DP~gilNPGk~ 467 (474)
|||+|..+.+|+.++++++.++.|++||++|||+|||||||+
T Consensus 207 eHG~G~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilNPGki 248 (248)
T PF02913_consen 207 EHGIGKLKKPYLEEEYGPAALRLMRAIKQAFDPNGILNPGKI 248 (248)
T ss_dssp SSGGGHHHHHHHCHHCHHHHHHHHHHHHHHH-TTS-BSTTG-
T ss_pred ccchhhhhHHHHHHhcchHHHHHHHHhhhccCCccCCCCCCC
Confidence 999999999999999999999999999999999999999996
No 32
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=5.8e-22 Score=192.24 Aligned_cols=234 Identities=16% Similarity=0.082 Sum_probs=184.9
Q ss_pred CcccCCCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCC--cEEEEcCCCCCcEEeecCCCeEecC
Q 011962 143 SFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNG--GVCIDLSLMKSVKALHIEDMDVVVE 220 (474)
Q Consensus 143 ~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~--givIdl~~m~~i~~id~~~~~v~V~ 220 (474)
+++++|+.++.++.|.+.+ + ++|+.+.|+|||+ +..|+ +.++-+.+|+.+. + ++.+++|+
T Consensus 11 tt~~iGG~A~~~~~~~~~~-l----------~~p~~vlG~GSNl----Lv~D~g~~~vv~~~~~~~~~-~--~~~~v~~~ 72 (257)
T PRK13904 11 SSVKIGPPLEVLVLEEIDD-F----------SQDGQIIGGANNL----LISPNPKNLAILGKNFDYIK-I--DGECLEIG 72 (257)
T ss_pred CceeECceEEEEEEechhh-h----------CCCeEEEeceeEE----EEecCCccEEEEccCcCeEE-E--eCCEEEEE
Confidence 4559999999999998887 6 8999999999998 55443 3344345577764 4 44589999
Q ss_pred CCCcHHHHHHHHccCCCe-eCCCCCCCceecccccccccCCCcccccc-ccceEEEEEEEecCCeEEEcccccccCcCCC
Q 011962 221 PGIGWMELNEYLEPYGLF-FPLDPGPGATIGGMCATRCSGSLAVRYGT-MRDNVINLKVVLANGDVVKTASRARKSAAGY 298 (474)
Q Consensus 221 aGv~~~~L~~~l~~~Gl~-~~~~~~~~~tvGG~i~~~~~G~~s~~yG~-~~d~V~~~~vVl~dG~i~~~~~~~~~~~~g~ 298 (474)
||+.|.+|.+++.++||. +++..++|+||||++.|| ++.||. ++|.|.++++++ |+ ... .+..++|
T Consensus 73 AG~~l~~l~~~~~~~gl~GlE~l~gIPGtVGGAv~mN-----aGa~g~ei~d~l~~V~~~~--~~---~~~--~e~~f~Y 140 (257)
T PRK13904 73 GATKSGKIFNYAKKNNLGGFEFLGKLPGTLGGLVKMN-----AGLKEYEISNNLESICTNG--GW---IEK--EDIGFGY 140 (257)
T ss_pred cCCcHHHHHHHHHHCCCchhhhhcCCCccHHHHHHhc-----CCcCccchheeEEEEEEEe--eE---EeH--HHCcccc
Confidence 999999999999999999 999999999999999999 888987 999999999998 42 222 2456888
Q ss_pred chhhhhhccCCCeeEEEEEEEEeEecCchhHHHHHHHHHHHhcCCCcccccccccccchhHHHHHHHHHHHhhcCCCeEE
Q 011962 299 DLTRLIIGSEGTLGIITEVTLRLQKIPQHSVMRKEALWACFAMEPSFEAMISDVCVPLSCLAELISRSKKELDASPLICT 378 (474)
Q Consensus 299 dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~~~~~~~w~~~~~~~~~~~~~~d~~vp~~~l~~~~~~~~~~~~~~~l~~~ 378 (474)
+-+.+- .||++++|++.|.++..+.+ ..+..+...| ......+++.++-. . .+.++|++.|+++.
T Consensus 141 R~S~~~-------~iIl~a~f~l~~~~~~~i~~--~~~~~R~~qP---~~psaGSvFkNP~~-~--~Ag~LIe~aGlKG~ 205 (257)
T PRK13904 141 RSSGIN-------GVILEARFKKTHGFDEELLE--AFKSMRKNQP---KGPSFGSCFKNPKG-D--YAGRLIEAVGLKGY 205 (257)
T ss_pred cCcCCC-------cEEEEEEEEECCCCHHHHHH--HHHHHHHhCC---CCCCcceeecCCCc-c--cchHHHHHcCCCCC
Confidence 865441 39999999999976554322 3333333333 34677788777632 2 35689999999999
Q ss_pred EEeecCCCCeeEEEEeCCCChHHHHHHHHHHHHHHHHHHhcCCe
Q 011962 379 VIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGT 422 (474)
Q Consensus 379 ~~gh~~~g~~h~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~gG~ 422 (474)
.+|.++.+..|+||++|.+.++. +++.+|++.+.+++.+..|.
T Consensus 206 ~iG~A~vS~kHanfIVN~g~Ata-~Dvl~Li~~v~~~V~e~~Gi 248 (257)
T PRK13904 206 CKGGAGFSEEHANFLVNLGGATF-EDALDLIELAKKRVLEEFGI 248 (257)
T ss_pred cccCEEEChhhcCeEEECCCCCH-HHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999987665 78999999999999887654
No 33
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.60 E-value=1.4e-15 Score=150.72 Aligned_cols=128 Identities=27% Similarity=0.394 Sum_probs=114.6
Q ss_pred EEEcCCCCCcEEeecCCCeEecCCCCcHHHHHHHHccCCCeeCCCCCC-CceecccccccccCCCccccccccceEEEEE
Q 011962 198 CIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLEPYGLFFPLDPGP-GATIGGMCATRCSGSLAVRYGTMRDNVINLK 276 (474)
Q Consensus 198 vIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~~~l~~~Gl~~~~~~~~-~~tvGG~i~~~~~G~~s~~yG~~~d~V~~~~ 276 (474)
-|++..+..|+++|.+.++|+|||+|+.+++.++|.+.|+++++.+.. +.||||.+.+-|.-+.+.+||+..+.+.+.|
T Consensus 105 ~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~EldDlTvGGLinG~Gies~ShkyGlfq~~~~aYE 184 (543)
T KOG1262|consen 105 QVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPELDDLTVGGLINGVGIESSSHKYGLFQHICTAYE 184 (543)
T ss_pred cCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeeecccccceecceeeecccccccchhhhHHhhhheeE
Confidence 355555668889999999999999999999999999999999998877 6999999988888888999999999999999
Q ss_pred EEecCCeEEEcccccccCcCCCchhhhhhccCCCeeEEEEEEEEeEecCchhH
Q 011962 277 VVLANGDVVKTASRARKSAAGYDLTRLIIGSEGTLGIITEVTLRLQKIPQHSV 329 (474)
Q Consensus 277 vVl~dG~i~~~~~~~~~~~~g~dl~~~~~Gs~G~lGIIt~~tlkl~p~p~~~~ 329 (474)
||++||+++++..+. +..|||.++-.|+|++|..+.+|+|+.|..++..
T Consensus 185 vVladGelv~~t~dn----e~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yvk 233 (543)
T KOG1262|consen 185 VVLADGELVRVTPDN----EHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYVK 233 (543)
T ss_pred EEecCCeEEEecCCc----ccCceEEEcccccCchheeeeeEEEEEeccceEE
Confidence 999999999986543 4569999999999999999999999999877644
No 34
>PF09330 Lact-deh-memb: D-lactate dehydrogenase, membrane binding; InterPro: IPR015409 Members of this entry are predominantly found in prokaryotic D-lactate dehydrogenase, forming the cap-membrane-binding domain, which consists of a large seven-stranded antiparallel beta-sheet flanked on both sides by alpha-helices. They allow for membrane association []. ; GO: 0050660 flavin adenine dinucleotide binding, 0055085 transmembrane transport; PDB: 1F0X_A.
Probab=97.81 E-value=3.5e-05 Score=74.74 Aligned_cols=104 Identities=19% Similarity=0.217 Sum_probs=70.3
Q ss_pred cccccccccchhHHHHHHHHHHHhhcCCCeEEEEeecCCCCeeEEEEeCCCChHHHHHHHHHHHHHHHHHHhcCCeeeec
Q 011962 347 AMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEGTCTGE 426 (474)
Q Consensus 347 ~~~~d~~vp~~~l~~~~~~~~~~~~~~~l~~~~~gh~~~g~~h~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~gG~~s~e 426 (474)
-+..|++.|.+. .++++.+.+.+++.-..-..+||+..-.+|.-+++..+. +..++-++|.+..-+.|..+.+|
T Consensus 179 ivaLDiALrRNd-~dW~E~LP~ei~~~i~~klyyGHF~ChVfHQDYivKkGv-----D~~alk~~ml~lLd~RGAeYPAE 252 (291)
T PF09330_consen 179 IVALDIALRRND-RDWFETLPPEIEDQIVHKLYYGHFFCHVFHQDYIVKKGV-----DPHALKHEMLALLDARGAEYPAE 252 (291)
T ss_dssp EEEEEEE-BTT--S--S----HHHHTTEEEEEEEEECCCTEEEEEEEEETTS------HHHHHHHHHHHHHHCT-BSSSS
T ss_pred eeeeeeeecCCc-hhhhhhCCHHHHHHHHHHeeccccchhhchhhhhhccCC-----CHHHHHHHHHHHHHHhCCCCCcc
Confidence 356788888887 778888888888877788899999999999999987653 23556777777778899999999
Q ss_pred CCCCcchHHHHHHhcCHHHHHHHHHHHHhcCCCCCCCCCC
Q 011962 427 HGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGK 466 (474)
Q Consensus 427 hg~G~~~~~~l~~~~g~~~~~~l~~iK~~~DP~gilNPGk 466 (474)
|.+|-. | .+-+.|++.-+++||.|-||||-
T Consensus 253 HNVGHL---Y-------~Akp~L~~fY~~lDPtNsfNPGI 282 (291)
T PF09330_consen 253 HNVGHL---Y-------HAKPALKAFYRKLDPTNSFNPGI 282 (291)
T ss_dssp S--TTT---S----------HHHHHHHHHH-TT--BSTTT
T ss_pred cCCCcc---c-------cCCHHHHHHHHhcCCCcCCCCCc
Confidence 999974 1 23467777889999999999994
No 35
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=97.57 E-value=0.00015 Score=71.58 Aligned_cols=116 Identities=19% Similarity=0.196 Sum_probs=65.7
Q ss_pred ccccccccchhHHHHHHHHHHHh-hcCCC--eEEEEe---e---------cCCCC-eeE-EEEeCC---CChHHHHHHHH
Q 011962 348 MISDVCVPLSCLAELISRSKKEL-DASPL--ICTVIA---H---------AGDGN-FHT-VILFDP---SKEEDRQEAER 407 (474)
Q Consensus 348 ~~~d~~vp~~~l~~~~~~~~~~~-~~~~l--~~~~~g---h---------~~~g~-~h~-~~~~~~---~~~~~~~~~~~ 407 (474)
-..++.+|.+++.+|.+.+-+.+ +..+. ...+|- . .-+.. +++ .++... ..+...+.+.+
T Consensus 142 PWlnlfvP~s~i~dF~~~V~~~il~~~~~~GpiLvYP~~~~kwd~~~s~v~Pde~vfylv~lLrsa~P~~~~~~l~~l~~ 221 (281)
T PF09265_consen 142 PWLNLFVPKSRIEDFDRGVFKGILKDDGNSGPILVYPLNRSKWDTRMSAVIPDEDVFYLVALLRSADPSDGPDDLERLLE 221 (281)
T ss_dssp --EEEEEEHHHHHHHHHHCCCCCTTTS-S-SEEEEEEEEGGGS-TTSS----SSSEEEEEEEEE---TTSSCCHHHHHHH
T ss_pred cceeeecchHHHHHHHHHHHHHhhccCCCCceEEEEEecccccCCCCcccCCCCCeEEEEEEeCCCCCCCCchhHHHHHH
Confidence 36788999999999988764433 33222 122210 0 01122 222 222221 24455677788
Q ss_pred HHHHHHHHHHhc--CCeeeecCCCCcchHHHHHHhcCHHHHHHHHHHHHhcCCCCCCCCCCe
Q 011962 408 LNRFMVHTALSM--EGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNPGKL 467 (474)
Q Consensus 408 l~~~i~~~~~~~--gG~~s~ehg~G~~~~~~l~~~~g~~~~~~l~~iK~~~DP~gilNPGk~ 467 (474)
.++.+.+.+.+. ++..+..|- ....+| .+.+| ..+++|.+.|++|||++||.||.-
T Consensus 222 qN~~il~~c~~agi~~k~Yl~~~--~t~~dW-~~HFG-~~W~~f~~~K~~yDP~~IL~PGq~ 279 (281)
T PF09265_consen 222 QNRRILEFCRKAGIGGKQYLPHY--TTQEDW-RRHFG-PKWERFVERKRRYDPKAILAPGQG 279 (281)
T ss_dssp HHHHHHHHHHHTT--EEESS-----SSHHHH-HHHHG-HHHHHHHHHHHHH-TT--B-GGG-
T ss_pred HHHHHHHHHHHcCCceEECCCCC--CCHHHH-HHHhc-hHHHHHHHHHHhCCchhhcCCCCC
Confidence 889999988554 455554444 333444 78889 699999999999999999999964
No 36
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=97.22 E-value=0.00085 Score=65.98 Aligned_cols=113 Identities=13% Similarity=0.111 Sum_probs=65.1
Q ss_pred ccccccccchhHHHHHHHHHHHhhcCC-C--eE---EEEeec---------CCCCeeEEEEeCCCChHHHHHHHHHHHHH
Q 011962 348 MISDVCVPLSCLAELISRSKKELDASP-L--IC---TVIAHA---------GDGNFHTVILFDPSKEEDRQEAERLNRFM 412 (474)
Q Consensus 348 ~~~d~~vp~~~l~~~~~~~~~~~~~~~-l--~~---~~~gh~---------~~g~~h~~~~~~~~~~~~~~~~~~l~~~i 412 (474)
...++++|.++..++++++.+++++.+ + .. ..+... +.....+.+......... ...+++.+.+
T Consensus 126 ~~~E~~iP~~~~~~~l~~l~~~~~~~~~~~~~~pie~R~~~~d~~~Ls~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~ 204 (259)
T PF04030_consen 126 WEMEYAIPIENAPEALRELRALIDKEGGFPVHFPIEVRFVKADDAWLSPAYGRDTCYIEIHMYRPMGDP-VPYEEFFRAF 204 (259)
T ss_dssp -EEEEEEEGGGHHHHHHHHHHTHHHHG--GGEEEEEEEEE--B-STT-TTBTS-EEEEEEEE-S-HH----HHHHHHHHH
T ss_pred eeEEEeeCHHHHHHHHHHHHHHHHHcccCceeEEEEEEEECCChhhcCCCCCCCEEEEEEEEeCCcccc-ccHHHHHHHH
Confidence 456889999999999999998888765 2 11 111111 112233444443332211 2266777777
Q ss_pred HHHHHhcCCeeeecCCCCcchHHHHHHhcCHHHHHHHHHHHHhcCCCCCCCC
Q 011962 413 VHTALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMNP 464 (474)
Q Consensus 413 ~~~~~~~gG~~s~ehg~G~~~~~~l~~~~g~~~~~~l~~iK~~~DP~gilNP 464 (474)
.+...++||.++...--. ...+.+.+.| +.++.|.++|+++||+|+|..
T Consensus 205 e~~~~~~ggRpHWgK~~~-~~~~~l~~~Y--p~~~~F~~~r~~~DP~g~F~n 253 (259)
T PF04030_consen 205 EQILRKYGGRPHWGKNHT-LTAEQLRKLY--PRLDDFLAVRKKLDPQGVFLN 253 (259)
T ss_dssp HHHHGGGT-EE-TTS------HHHHHHT---TTHHHHHHHHHHH-TT-TT--
T ss_pred HHHHHHcCCEECcCcCCC-CCHHHHHHHC--cCHHHHHHHHHHhCCCCCCCC
Confidence 777888999997443322 2455677888 389999999999999999954
No 37
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=97.07 E-value=0.0024 Score=61.99 Aligned_cols=112 Identities=15% Similarity=0.103 Sum_probs=69.8
Q ss_pred cccccccchhHHHHHHHHHHHhhcC-----CCeE-----EEEeecC-------CCCeeEEEEeCC-C-ChHHHHHHHHHH
Q 011962 349 ISDVCVPLSCLAELISRSKKELDAS-----PLIC-----TVIAHAG-------DGNFHTVILFDP-S-KEEDRQEAERLN 409 (474)
Q Consensus 349 ~~d~~vp~~~l~~~~~~~~~~~~~~-----~l~~-----~~~gh~~-------~g~~h~~~~~~~-~-~~~~~~~~~~l~ 409 (474)
..++++|.++..+++++++++++.. ++.. +.+.-+. .....+.+.+.. . ++......+.+.
T Consensus 64 E~EyaVP~e~~~~aL~elr~l~~~~~~~l~~~ev~fPIevR~vaADdawLSp~rDSv~I~~~~yr~~~~~~~pr~~~~~f 143 (257)
T PLN00107 64 QSAISVPLSGAAAFINDIKALRDIEPDALCGLELNYGVLLRYVRASPAHLGKEEDALDFDLTYYRSKDDPAAPRLHEDAM 143 (257)
T ss_pred EEEEEecHHHHHHHHHHHHHHHHhCcccccccccccCeEEEEecCcchhhCCCCCeEEEEEEEecccCCccccccHHHHH
Confidence 4588999999999999999988776 2221 1121111 112233332222 1 222122445677
Q ss_pred HHHHHH-HHhcCCeeeecCCCCcchHHHHHHhcCHHHHHHHHHHHHhcCCCCCCC
Q 011962 410 RFMVHT-ALSMEGTCTGEHGIGTGKMKYLEKELGTGALETMKRIKVALDPNNIMN 463 (474)
Q Consensus 410 ~~i~~~-~~~~gG~~s~ehg~G~~~~~~l~~~~g~~~~~~l~~iK~~~DP~gilN 463 (474)
+++.+. ..++||.++..+--.+ ..+.+.+.|. +++.|.++|+++||+|+|-
T Consensus 144 ~eiEqial~kygGRPHWGK~h~l-~~~~l~~lYP--r~~dFlavR~~lDP~G~F~ 195 (257)
T PLN00107 144 EEIEQMAILKYGALPHWGKNRNA-AFDGAIAKYK--KAGEFLKVKERLDPEGLFS 195 (257)
T ss_pred HHHHHHHHHhcCCcCCchhccCC-CHHHHHHHCc--CHHHHHHHHHHhCCCCccC
Confidence 777655 6789999984322222 3445666674 7999999999999999983
No 38
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=97.03 E-value=0.00039 Score=50.00 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=24.5
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCCCCCCCC
Q 011962 435 KYLEKELGTGALETMKRIKVALDPNNIMNPGK 466 (474)
Q Consensus 435 ~~l~~~~g~~~~~~l~~iK~~~DP~gilNPGk 466 (474)
++....|| +++++|++||+++||+|+|.--.
T Consensus 14 ~~~~~yyg-~n~~rL~~iK~~yDP~n~F~~~q 44 (47)
T PF08031_consen 14 DWQEAYYG-ENYDRLRAIKRKYDPDNVFRFPQ 44 (47)
T ss_dssp HHHHHHHG-GGHHHHHHHHHHH-TT-TS-STT
T ss_pred HHHHHHhc-hhHHHHHHHHHHhCccceeCCCC
Confidence 67888899 79999999999999999996443
No 39
>PRK09799 putative oxidoreductase; Provisional
Probab=96.91 E-value=0.001 Score=65.60 Aligned_cols=143 Identities=13% Similarity=0.170 Sum_probs=88.7
Q ss_pred EEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHHHHH
Q 011962 153 IIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYL 232 (474)
Q Consensus 153 ~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~~~l 232 (474)
-++.|+|.+|+.++++- ++-...+.+|||.+.-..-.....++||++++ .+..|..+++.+++++++++.++.+..
T Consensus 4 ~y~~P~sl~Ea~~ll~~---~~~~a~ilAGGT~L~~~~~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~~ 79 (258)
T PRK09799 4 QFFRPDSVEQALELKRR---YQDEAVWFAGGSKLNATPTRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDAR 79 (258)
T ss_pred cEeCCCCHHHHHHHHHh---CCCCCEEEecCCChHhhhCCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhCc
Confidence 47899999999998864 32234678999998321111134789999987 676677788899999999999998764
Q ss_pred ccC-CCe--eC--CCCCC--CceecccccccccCCCcccccccc--ceEEEEEEEecCCeEEEcccccccCcCCCchhhh
Q 011962 233 EPY-GLF--FP--LDPGP--GATIGGMCATRCSGSLAVRYGTMR--DNVINLKVVLANGDVVKTASRARKSAAGYDLTRL 303 (474)
Q Consensus 233 ~~~-Gl~--~~--~~~~~--~~tvGG~i~~~~~G~~s~~yG~~~--d~V~~~~vVl~dG~i~~~~~~~~~~~~g~dl~~~ 303 (474)
.-. .|. +- ..+.+ -+||||++.++.- .+.+. =..++.+|++.+++.+. +..+
T Consensus 80 ~~~~~L~~a~~~vas~qIRN~aTiGGNl~~a~p------~sD~~p~LlAldA~v~l~~~r~vp-------------l~~f 140 (258)
T PRK09799 80 FIPAALREALGFVYSRHLRNQSTIGGEIAARQE------ESVLLPVLLALDAELVFGNGETLS-------------IEDY 140 (258)
T ss_pred ccHHHHHHHHHHhCCHHHhccchhHHHhhcCCc------cHHHHHHHHHcCCEEEEecCcEEe-------------HHHh
Confidence 221 121 00 11222 4999999986621 12111 12345566666664332 2233
Q ss_pred hhccCCCeeEEEEEEEE
Q 011962 304 IIGSEGTLGIITEVTLR 320 (474)
Q Consensus 304 ~~Gs~G~lGIIt~~tlk 320 (474)
+.|..+ .|||++.+.
T Consensus 141 ~~g~~~--Eil~~I~iP 155 (258)
T PRK09799 141 LACPCD--RLLTEIIIP 155 (258)
T ss_pred cCCCCC--cEEEEEEcC
Confidence 444333 599988764
No 40
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=96.37 E-value=0.0035 Score=61.78 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=66.0
Q ss_pred EEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHHHHHc
Q 011962 154 IVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEYLE 233 (474)
Q Consensus 154 Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~~~l~ 233 (474)
+++|+|.+|..++++- ++-.-.+.+|||.+.-.-.-.+..++||++++ .+..|+.+++.+++++++++.++.+...
T Consensus 4 y~~P~sl~Ea~~ll~~---~~~~a~~lAGGTdL~~~~~~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~~~ 79 (257)
T TIGR03312 4 FFRPESTIQALELKKR---HTGVAVWFAGGSKLNATPTRTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDNEL 79 (257)
T ss_pred eECCCCHHHHHHHHHh---CCCCCEEEecCcchhhhhcccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhCcc
Confidence 6899999999998764 32224568999998421111123688999887 6666777788999999999999976421
Q ss_pred cCC-Ce--e--CCCCCC--Cceeccccccc
Q 011962 234 PYG-LF--F--PLDPGP--GATIGGMCATR 256 (474)
Q Consensus 234 ~~G-l~--~--~~~~~~--~~tvGG~i~~~ 256 (474)
-.+ +. . -..+.+ -+|+||++.++
T Consensus 80 ~~~~L~~aa~~va~~qIRN~gTlGGNl~~a 109 (257)
T TIGR03312 80 TPAALKEALGFVYSRHIRNQATIGGEIAAF 109 (257)
T ss_pred hHHHHHHHHHHhCCHHHhccccHHHHhhcC
Confidence 111 11 0 012222 49999999866
No 41
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=96.28 E-value=0.0021 Score=54.47 Aligned_cols=78 Identities=10% Similarity=-0.079 Sum_probs=54.2
Q ss_pred CCCcccccccccccchhHHHHHHHHHHHhhcCCCeEEEEeecCCCCeeEEEEeCCCChHHHHHHHHHHHHHHHHHHhcCC
Q 011962 342 EPSFEAMISDVCVPLSCLAELISRSKKELDASPLICTVIAHAGDGNFHTVILFDPSKEEDRQEAERLNRFMVHTALSMEG 421 (474)
Q Consensus 342 ~~~~~~~~~d~~vp~~~l~~~~~~~~~~~~~~~l~~~~~gh~~~g~~h~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~gG 421 (474)
.+++....+..+++.+.... ...+..+|++.|+++..+|.++.+..|+||++|.+.++. .++.+|++.+.+.|.+..|
T Consensus 17 ~~qP~~~~saGS~FkNP~~~-~~~Ag~LIe~aGlKG~~iG~a~vS~kHanfivN~g~Ata-~dv~~Li~~v~~~V~~~~G 94 (105)
T PF02873_consen 17 LKQPLELPSAGSVFKNPPGD-EKSAGWLIEQAGLKGFRIGGAQVSEKHANFIVNHGGATA-ADVLALIEEVRERVKEKFG 94 (105)
T ss_dssp CHSTTTSCEEEESB---TTS-HH-HHHHHHHTT-TT-EETTEEE-SSSTTEEEE-SS--H-HHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCcceeeeCCCcc-hhhHHHHHHHcCCCCCeeCcCEechhhCCeEEECCCCCH-HHHHHHHHHHHHHHHHHHC
Confidence 34445566777887766433 125668999999999999999999999999999887665 7889999999999887654
No 42
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=96.11 E-value=0.0084 Score=64.07 Aligned_cols=102 Identities=13% Similarity=0.103 Sum_probs=71.2
Q ss_pred CCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCC-cC-CCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHHH
Q 011962 151 PDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHT-LS-PNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMEL 228 (474)
Q Consensus 151 P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~-~~-~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L 228 (474)
...+++|+|.+|+.++++.- . ...+.+|||.+.-.- .. .+...+||++++..+..|..+++.++++|++++.|+
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~~---~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el 267 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAAH---P-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDA 267 (467)
T ss_pred CceEECCCCHHHHHHHHhhC---C-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHH
Confidence 35689999999999998742 2 346789999972110 01 123689999987766667777889999999999999
Q ss_pred HHHHccC--CCe--eCC--CCCC--Cceeccccccc
Q 011962 229 NEYLEPY--GLF--FPL--DPGP--GATIGGMCATR 256 (474)
Q Consensus 229 ~~~l~~~--Gl~--~~~--~~~~--~~tvGG~i~~~ 256 (474)
.+.+.++ .|. +.. .+.+ -+||||++++.
T Consensus 268 ~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~a 303 (467)
T TIGR02963 268 YAALAKRYPELGELLRRFASLQIRNAGTLGGNIANG 303 (467)
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHcCceecccccccC
Confidence 8766543 121 111 1222 49999999876
No 43
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=95.41 E-value=0.037 Score=51.03 Aligned_cols=101 Identities=21% Similarity=0.179 Sum_probs=64.1
Q ss_pred CEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCc--CCCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHH
Q 011962 152 DIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL--SPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELN 229 (474)
Q Consensus 152 ~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~--~~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~ 229 (474)
..+++|+|.+|+.++++ .. -...+.+|||.+.-.-- ......+||++++..+..|+.+++.++++|++++.++.
T Consensus 3 ~~~~~P~sl~ea~~ll~--~~--~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l~ 78 (171)
T PF00941_consen 3 FEYFRPKSLEEALELLA--KG--PDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSELE 78 (171)
T ss_dssp -EEEE-SSHHHHHHHHH--HG--TTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHHH
T ss_pred eEEEccCCHHHHHHHHh--cC--CCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHHh
Confidence 46899999999999999 22 25677899998620000 01235899999887776677788999999999999998
Q ss_pred HHH--ccC-C-Ce--eCCCCC----CCceeccccccc
Q 011962 230 EYL--EPY-G-LF--FPLDPG----PGATIGGMCATR 256 (474)
Q Consensus 230 ~~l--~~~-G-l~--~~~~~~----~~~tvGG~i~~~ 256 (474)
+.- .++ . +. +..-.+ .-+|+||+++..
T Consensus 79 ~~~~~~~~~p~L~~~~~~ias~~IRn~aTiGGNl~~~ 115 (171)
T PF00941_consen 79 ESPLIQQYFPALAQAARRIASPQIRNRATIGGNLCNA 115 (171)
T ss_dssp HHHHHHHHHHHHHHHHCTSS-HHHHTT-BHHHHHHHT
T ss_pred hcchhhhhHHHHHHHHHHhCCHhHeeeeeeccccccC
Confidence 872 111 0 10 111111 149999999665
No 44
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=94.78 E-value=0.035 Score=55.66 Aligned_cols=100 Identities=13% Similarity=0.086 Sum_probs=65.6
Q ss_pred EEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCC-CcC-CCCcEEEEcCCCCCcEEeec-CCCeEecCCCCcHHHHH
Q 011962 153 IIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGH-TLS-PNGGVCIDLSLMKSVKALHI-EDMDVVVEPGIGWMELN 229 (474)
Q Consensus 153 ~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~-~~~-~~~givIdl~~m~~i~~id~-~~~~v~V~aGv~~~~L~ 229 (474)
-++.|+|.+|..++++.- . ...+.+|||.+.-. ... .+...+||++++..+..|.. +++.+++++++++.++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~~---~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~ 81 (291)
T PRK09971 6 EYHEAATLEEAIELLADN---P-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQII 81 (291)
T ss_pred ceeCCCCHHHHHHHHHhC---C-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHh
Confidence 588999999999988742 2 34678999986211 011 12368999998766666663 45679999999999998
Q ss_pred H--HHccCC--Ce--eC--CCCCC--Cceeccccccc
Q 011962 230 E--YLEPYG--LF--FP--LDPGP--GATIGGMCATR 256 (474)
Q Consensus 230 ~--~l~~~G--l~--~~--~~~~~--~~tvGG~i~~~ 256 (474)
+ .+.++- |. +. ..+.. -+||||++.+.
T Consensus 82 ~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a 118 (291)
T PRK09971 82 EDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNG 118 (291)
T ss_pred cChHHHHHhHHHHHHHHHhCCHHHhcceecccccccC
Confidence 6 122110 00 10 11222 49999999865
No 45
>PLN02906 xanthine dehydrogenase
Probab=93.24 E-value=0.11 Score=62.52 Aligned_cols=101 Identities=15% Similarity=0.089 Sum_probs=70.0
Q ss_pred CEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCC-c-CCCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHH
Q 011962 152 DIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHT-L-SPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELN 229 (474)
Q Consensus 152 ~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~-~-~~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~ 229 (474)
..++.|+|.+|+.++++... + .++.+|||.+.-.. . ..+..++||++++..+..|+.++..++++|++++.+|.
T Consensus 229 ~~~~~P~tl~ea~~ll~~~~--~--a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~ 304 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAEYP--D--AKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQ 304 (1319)
T ss_pred ceEECcCCHHHHHHHHHhCC--C--CEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHH
Confidence 45899999999999877531 2 35678999972111 0 11337899999877776677778899999999999999
Q ss_pred HHHccCC-----C---eeC---------CCCCC--Cceeccccccc
Q 011962 230 EYLEPYG-----L---FFP---------LDPGP--GATIGGMCATR 256 (474)
Q Consensus 230 ~~l~~~G-----l---~~~---------~~~~~--~~tvGG~i~~~ 256 (474)
+.|.+.= + .+| ..+.+ -+||||++++.
T Consensus 305 ~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a 350 (1319)
T PLN02906 305 NLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTA 350 (1319)
T ss_pred HHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccC
Confidence 8754321 0 011 11222 49999999876
No 46
>PLN00192 aldehyde oxidase
Probab=93.06 E-value=0.16 Score=61.15 Aligned_cols=106 Identities=13% Similarity=0.057 Sum_probs=72.4
Q ss_pred CCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHHH
Q 011962 151 PDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNE 230 (474)
Q Consensus 151 P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~~ 230 (474)
..-++.|+|.+|+.++++.....+-..++..|||.+.-.-....-.++||++++..+..|..+++.++++|++++.++.+
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~~ 312 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKDEELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAIE 312 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeeccCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHHH
Confidence 34689999999999998753101123566789999731111112368999998777777777788999999999999998
Q ss_pred HHccCCC---eeCC---------CCCC--Cceeccccccc
Q 011962 231 YLEPYGL---FFPL---------DPGP--GATIGGMCATR 256 (474)
Q Consensus 231 ~l~~~Gl---~~~~---------~~~~--~~tvGG~i~~~ 256 (474)
.+...-. .+|. .+.+ -+||||++++.
T Consensus 313 ~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~A 352 (1344)
T PLN00192 313 ALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMA 352 (1344)
T ss_pred HHHhhccccchHHHHHHHHHHhcChhhccceechhhhccc
Confidence 7765421 1121 1112 49999999876
No 47
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=92.06 E-value=0.28 Score=49.86 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=65.5
Q ss_pred EEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCc--CCCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHHH
Q 011962 153 IIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL--SPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNE 230 (474)
Q Consensus 153 ~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~--~~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~~ 230 (474)
-++.|+|.+|..++++-. + .-.+.+|||.+.-..- ......+||+.++..+..|+.+++.+++++++++.+|.+
T Consensus 6 ~~~~P~sl~eA~~ll~~~---~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~~ 81 (321)
T TIGR03195 6 RTLRPASLADAVAALAAH---P-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALAE 81 (321)
T ss_pred eEECCCCHHHHHHHHhhC---C-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHhh
Confidence 589999999999988743 2 2356899997621110 012368999998766666666778899999999999966
Q ss_pred H--HccC-C-Ce--eC--CCCCC--Cceeccccccc
Q 011962 231 Y--LEPY-G-LF--FP--LDPGP--GATIGGMCATR 256 (474)
Q Consensus 231 ~--l~~~-G-l~--~~--~~~~~--~~tvGG~i~~~ 256 (474)
. +.+. . |. +. .++.. -+||||++.+.
T Consensus 82 ~~~i~~~~p~L~~a~~~ias~qIRN~aTiGGNi~~~ 117 (321)
T TIGR03195 82 DALVRTRWPALAQAARAVAGPTHRAAATLGGNLCLD 117 (321)
T ss_pred ChhhHhHhHHHHHHHHHhCCHHHhCceecHHhhhcc
Confidence 3 1111 0 11 00 11222 49999999864
No 48
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=90.63 E-value=0.4 Score=57.78 Aligned_cols=102 Identities=13% Similarity=0.111 Sum_probs=70.3
Q ss_pred CEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCC-c-CCCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHH
Q 011962 152 DIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHT-L-SPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELN 229 (474)
Q Consensus 152 ~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~-~-~~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~ 229 (474)
..++.|+|.+|+.++++.. . .-++.+|||.+.-.- . ..+...+||+++...+..|..+++.++++|++++.+|.
T Consensus 237 ~~~~~P~tl~ea~~ll~~~---~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFKY---P-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHhC---C-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 4689999999999998753 2 245678999972110 0 01225899999877777777778899999999999999
Q ss_pred HHHccC----C----CeeCC---------CCCC--Cceecccccccc
Q 011962 230 EYLEPY----G----LFFPL---------DPGP--GATIGGMCATRC 257 (474)
Q Consensus 230 ~~l~~~----G----l~~~~---------~~~~--~~tvGG~i~~~~ 257 (474)
+.|.+. . -.+|. .+.+ -+||||++.+..
T Consensus 313 ~~l~~~i~~~p~~~~~~~p~L~~a~~~ias~qIRN~gTlGGNi~~as 359 (1330)
T TIGR02969 313 DILADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISRH 359 (1330)
T ss_pred HHHHHhhhcCchhhhHHHHHHHHHHHHhCChhhcccccchhhcccCC
Confidence 875432 1 00111 1222 499999998764
No 49
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=90.07 E-value=0.34 Score=47.86 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=64.1
Q ss_pred cCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCC-cC--CCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHHHH--
Q 011962 157 PRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHT-LS--PNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEY-- 231 (474)
Q Consensus 157 P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~-~~--~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~~~-- 231 (474)
|+|.+|+.++++.. . ..++.+|||.+.-.- .. .....+||++++..+..|+.+++.+++++++++.++.+.
T Consensus 1 P~sl~ea~~ll~~~---~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~~ 76 (264)
T TIGR03199 1 PAALDEAWSLLEKA---P-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNPL 76 (264)
T ss_pred CCCHHHHHHHHHhC---C-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhChH
Confidence 78999999988753 2 346789999862111 00 113689999988877777778899999999999999752
Q ss_pred HccC--CCe--eC--CCCCC--Cceeccccccc
Q 011962 232 LEPY--GLF--FP--LDPGP--GATIGGMCATR 256 (474)
Q Consensus 232 l~~~--Gl~--~~--~~~~~--~~tvGG~i~~~ 256 (474)
+.++ .|. +. ..+.. -+|+||+++++
T Consensus 77 i~~~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 77 IKRALPCFVDAASAIAAPGVRNRATIGGNIASG 109 (264)
T ss_pred hHhHhHHHHHHHHHhcCHHHhcceecHHhccCc
Confidence 1110 011 11 11222 49999999765
No 50
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=88.91 E-value=0.77 Score=46.95 Aligned_cols=103 Identities=12% Similarity=0.144 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcC---CCCcEEEEcCCCCCcEEeecCCCeEecCCCCcH
Q 011962 149 NIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLS---PNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGW 225 (474)
Q Consensus 149 ~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~---~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~ 225 (474)
+-.+.++.|.+.+|..+++.. .-+ .++..|++.+.=. +. .+-..+|-..++..+..|+...+.+++++|+++
T Consensus 201 ~~~~r~~~P~~l~D~a~l~aa--~P~--AtivAGsTDvgLw-Vtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~ 275 (493)
T COG4630 201 SGDDRFIVPATLADFADLLAA--HPG--ATIVAGSTDVGLW-VTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTY 275 (493)
T ss_pred CCCceeEeeccHHHHHHHHhh--CCC--CEEEecCcchhhH-HHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccH
Confidence 345778999999999998854 333 4456677775211 11 122456666677777777788899999999999
Q ss_pred HHHHHHHccCCCe-------eCCCCC-CCceeccccccc
Q 011962 226 MELNEYLEPYGLF-------FPLDPG-PGATIGGMCATR 256 (474)
Q Consensus 226 ~~L~~~l~~~Gl~-------~~~~~~-~~~tvGG~i~~~ 256 (474)
.|.+..|..+=-. |..... .-+|+||+|+++
T Consensus 276 t~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIang 314 (493)
T COG4630 276 TQAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANG 314 (493)
T ss_pred HHHHHHHHhhCchHHHHHHHhcchhhhccccccccccCC
Confidence 9999999764211 111111 258999999877
No 51
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=67.99 E-value=11 Score=37.59 Aligned_cols=102 Identities=14% Similarity=0.070 Sum_probs=63.6
Q ss_pred CCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCc--CCCCcEEEEcCCCCCcEE-eecCCCeEecCCCCcHHH
Q 011962 151 PDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTL--SPNGGVCIDLSLMKSVKA-LHIEDMDVVVEPGIGWME 227 (474)
Q Consensus 151 P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~--~~~~givIdl~~m~~i~~-id~~~~~v~V~aGv~~~~ 227 (474)
+-.+.+|.|.+|...+++-. + -..+.+|||++.-.-- .....-+||+.++..... ...+++.++++|-+++.|
T Consensus 3 ~f~y~rp~Sv~eA~~ll~~~---~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLARA---P-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHHhC---C-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 34688999999988888743 3 4567899999731000 012356788887642222 334566799999999999
Q ss_pred HHHHHccCCC-e-e------CCCCCC--Cceeccccccc
Q 011962 228 LNEYLEPYGL-F-F------PLDPGP--GATIGGMCATR 256 (474)
Q Consensus 228 L~~~l~~~Gl-~-~------~~~~~~--~~tvGG~i~~~ 256 (474)
+.+.-.-+.. . + -.++.. -+||||.+..+
T Consensus 79 i~~~~~~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a 117 (284)
T COG1319 79 IARHPAVRRIPPALSEAASAIASPQVRNRATIGGNLCNA 117 (284)
T ss_pred HHhChhhhhhchHHHHHHHHhcChhhcceeeecchhccC
Confidence 9744322211 1 1 112322 49999997665
No 52
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=44.23 E-value=28 Score=37.70 Aligned_cols=75 Identities=17% Similarity=0.357 Sum_probs=45.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHhhcC-CCcEEE-----EcCCCC-CCCCCcCCCCcEEEEcCCCCCcEEeecCCCeEecCC
Q 011962 149 NIPDIIVFPRSEDEVSKIVKCCDKH-KVPIIP-----YGGATS-IEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEP 221 (474)
Q Consensus 149 ~~P~~Vv~P~s~eeV~~iv~~a~~~-~~~v~~-----~GgG~s-~~g~~~~~~~givIdl~~m~~i~~id~~~~~v~V~a 221 (474)
+.|-..+.|.|+|+|.+++++|+++ ..|++. |+|||. ++ .-+..+|-+ ...|.. .++-.+.|+.
T Consensus 150 G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGraGGHHSwe-----Dld~llL~t--Ys~lR~--~~NIvl~vGg 220 (717)
T COG4981 150 GFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWE-----DLDDLLLAT--YSELRS--RDNIVLCVGG 220 (717)
T ss_pred CceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCccCCccchh-----hcccHHHHH--HHHHhc--CCCEEEEecC
Confidence 6788999999999999999999987 466665 334433 31 111222221 122221 2444577888
Q ss_pred CCcH-HHHHHHH
Q 011962 222 GIGW-MELNEYL 232 (474)
Q Consensus 222 Gv~~-~~L~~~l 232 (474)
|+-- .+-+.+|
T Consensus 221 GiGtp~~aa~YL 232 (717)
T COG4981 221 GIGTPDDAAPYL 232 (717)
T ss_pred CcCChhhccccc
Confidence 8754 4555555
No 53
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=27.23 E-value=89 Score=26.74 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=28.3
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEE
Q 011962 148 VNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIP 179 (474)
Q Consensus 148 ~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~ 179 (474)
.+.+..|+...|++|+..+.+.|++.|++...
T Consensus 45 ~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~ 76 (113)
T PRK04322 45 EGQKKVVLKVNSEEELLELKEKAERLGLPTAL 76 (113)
T ss_pred CCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEE
Confidence 36789999999999999999999999988653
No 54
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=25.75 E-value=1.2e+02 Score=28.10 Aligned_cols=67 Identities=21% Similarity=0.235 Sum_probs=31.6
Q ss_pred EEEEcCCHH-HHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCCcEEEEcCCCCCcEEeecCCCeEecCCC
Q 011962 153 IIVFPRSED-EVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPG 222 (474)
Q Consensus 153 ~Vv~P~s~e-eV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~givIdl~~m~~i~~id~~~~~v~V~aG 222 (474)
.++.|.+.+ |++++++-..+.++|++..+ -..-....+..--.+-||++--+.++ -++++.++ +.|.
T Consensus 86 llfs~~~~~~e~~~~a~~L~~~gi~~v~Vs-~~~~~~~~l~~~~~~~Idl~~~~~Lv-P~EdG~Ri-g~P~ 153 (172)
T PF10740_consen 86 LLFSPFSTDEEAVALAKQLIEQGIPFVGVS-PNKPDEEDLEDLADVHIDLKLPKPLV-PTEDGDRI-GFPH 153 (172)
T ss_dssp EEEES-S--HHHHHHHHHHHHHT--EEEEE--SS---TTGGG-SSS-EE----S-SE-E-TTS-EE----H
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCCEEEEE-ecCCCCCchhhhhhheeecccCCCcc-cCCCCCEe-cchH
Confidence 456687777 99999999999999999988 11111222332234678987667776 45554443 4443
No 55
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.41 E-value=1.2e+02 Score=28.37 Aligned_cols=31 Identities=23% Similarity=0.185 Sum_probs=28.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHhhcCCCcEEE
Q 011962 149 NIPDIIVFPRSEDEVSKIVKCCDKHKVPIIP 179 (474)
Q Consensus 149 ~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~ 179 (474)
+.|..||...+++++.++.+.|++.+++...
T Consensus 123 GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~ 153 (190)
T KOG3282|consen 123 GQAKIVVKAESEEELMELQKDAKKLGLYTHL 153 (190)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHcCCcEEE
Confidence 6899999999999999999999999987654
No 56
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=23.69 E-value=84 Score=26.36 Aligned_cols=34 Identities=15% Similarity=0.377 Sum_probs=28.2
Q ss_pred CCC-EEEEcCCHHHHHHHHHHhhcCCCcEEEEcCC
Q 011962 150 IPD-IIVFPRSEDEVSKIVKCCDKHKVPIIPYGGA 183 (474)
Q Consensus 150 ~P~-~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG 183 (474)
.|. .+|++.+-.|++.++.+|.+.|+||...+.-
T Consensus 55 vP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 55 VPWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred CCCEEEECCCCCccHHHHHHHHHHcCCcEEEeCCC
Confidence 444 4677788899999999999999999987653
No 57
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=23.59 E-value=1.1e+02 Score=27.43 Aligned_cols=28 Identities=11% Similarity=0.193 Sum_probs=25.0
Q ss_pred EEEEcCCHHHHHHHHHHhhcCCCcEEEE
Q 011962 153 IIVFPRSEDEVSKIVKCCDKHKVPIIPY 180 (474)
Q Consensus 153 ~Vv~P~s~eeV~~iv~~a~~~~~~v~~~ 180 (474)
.|+.|.+.+|+..+++.|-+.+-|+.+|
T Consensus 126 ~v~~Ps~~~~~~~ll~~a~~~~~P~~ir 153 (156)
T cd07033 126 TVLRPADANETAAALEAALEYDGPVYIR 153 (156)
T ss_pred EEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 5899999999999999998877788776
No 58
>PRK03971 putative deoxyhypusine synthase; Provisional
Probab=23.31 E-value=54 Score=33.61 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=61.2
Q ss_pred HHHHHHhhcCCCcEEEEcCCCCCCCCCcC------CCCcEEEEc----CCCCCcEEeecCCCeEecCCCCcHHHHHHH-H
Q 011962 164 SKIVKCCDKHKVPIIPYGGATSIEGHTLS------PNGGVCIDL----SLMKSVKALHIEDMDVVVEPGIGWMELNEY-L 232 (474)
Q Consensus 164 ~~iv~~a~~~~~~v~~~GgG~s~~g~~~~------~~~givIdl----~~m~~i~~id~~~~~v~V~aGv~~~~L~~~-l 232 (474)
..++.+|.++++||.+=|=.-+..|..+. ...+++||+ .+|+.+..-....+.+.+++|+.=..+..+ |
T Consensus 194 ~Sil~~Ayk~~VPIf~Pa~tDgsiG~~l~~~~~~~~~~~l~~D~~~D~~~l~~i~~~s~k~G~iilGGGvpKh~~~~~~l 273 (334)
T PRK03971 194 KSILYWAYKNNIPIFCPAITDGSIGDMLYFFKKEGKDSELGIDIANDIVKLNDLAITAKETACIVLGGSLPKHSIINANL 273 (334)
T ss_pred chHHHHHHHcCCCEEcCCcchhhHHHHHHHHHhhcCCCceEEeHHHHHHHHHHHHhccCceEEEEECCchHHHHHHHHhc
Confidence 67899999999999864321111111111 112355554 456665522234466999999987666554 5
Q ss_pred ccCCCe----eCCCCCCCceecccccccccCCCccccccccce
Q 011962 233 EPYGLF----FPLDPGPGATIGGMCATRCSGSLAVRYGTMRDN 271 (474)
Q Consensus 233 ~~~Gl~----~~~~~~~~~tvGG~i~~~~~G~~s~~yG~~~d~ 271 (474)
.+.|+. +..+....++..|+...- +..||.+...
T Consensus 274 ~~~G~dYaVqItta~~~dGslSGA~p~E-----AvSWGKi~~~ 311 (334)
T PRK03971 274 FRGGTDYAIYITTAMPWDGSLSGAPPEE-----GVSWGKIKAK 311 (334)
T ss_pred ccCCCCEEEEEeCCCCCCCcccCCChhh-----hhccCCccCC
Confidence 555654 223333468888887777 5667776543
No 59
>cd02407 PTH2_family Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes.
Probab=22.28 E-value=1.4e+02 Score=25.64 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=27.8
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHhhcCCCcEE
Q 011962 148 VNIPDIIVFPRSEDEVSKIVKCCDKHKVPII 178 (474)
Q Consensus 148 ~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~ 178 (474)
.+.+..|+...+++|+.++.+.|.+.|++..
T Consensus 47 ~g~~KvVl~v~~~~~l~~l~~~a~~~gl~~~ 77 (115)
T cd02407 47 EGQKKVVLKVPSEEELLELAKKAKELGLPHS 77 (115)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHHcCCCeE
Confidence 4678999999999999999999999988854
No 60
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=22.25 E-value=69 Score=32.14 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=20.8
Q ss_pred cCCHHHHHHHHHHhhcCCCcEEE
Q 011962 157 PRSEDEVSKIVKCCDKHKVPIIP 179 (474)
Q Consensus 157 P~s~eeV~~iv~~a~~~~~~v~~ 179 (474)
.-|.+|+++++++|+++||.|+|
T Consensus 68 ~yT~~di~elv~yA~~rgI~viP 90 (303)
T cd02742 68 FYTYAQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred eECHHHHHHHHHHHHHcCCEEEE
Confidence 34779999999999999999997
No 61
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=21.94 E-value=71 Score=32.60 Aligned_cols=23 Identities=13% Similarity=0.432 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEE
Q 011962 158 RSEDEVSKIVKCCDKHKVPIIPY 180 (474)
Q Consensus 158 ~s~eeV~~iv~~a~~~~~~v~~~ 180 (474)
-|.+|+++|+++|+++||.|+|-
T Consensus 72 YT~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 72 YTQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEe
Confidence 38899999999999999999983
No 62
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=21.50 E-value=73 Score=32.00 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=21.6
Q ss_pred cCCHHHHHHHHHHhhcCCCcEEE
Q 011962 157 PRSEDEVSKIVKCCDKHKVPIIP 179 (474)
Q Consensus 157 P~s~eeV~~iv~~a~~~~~~v~~ 179 (474)
+-|.+|+++++++|+++||.|+|
T Consensus 56 ~yT~~ei~ei~~yA~~~gI~vIP 78 (301)
T cd06565 56 AYTKEEIREIDDYAAELGIEVIP 78 (301)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEe
Confidence 46999999999999999999998
No 63
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=21.13 E-value=4.9e+02 Score=25.81 Aligned_cols=111 Identities=11% Similarity=0.004 Sum_probs=64.9
Q ss_pred CCCCHHHHHHHHh-hcCC-CcccChhhhhhhcCCCCCcccCCCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCC
Q 011962 109 KEIPQELVDELKA-ICQD-DMTMDYEERYIHGKPQNSFHKAVNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSI 186 (474)
Q Consensus 109 ~~~~~~~~~~L~~-~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~ 186 (474)
.-+.++.++.|++ +++. .+.++.-+.... ..+. ...++.+|+.++.+...+.|.+-++.=|||..
T Consensus 115 ~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~---------L~g~----~~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~ 181 (263)
T COG0351 115 PLLDEEAVEALREELLPLATVVTPNLPEAEA---------LSGL----PKIKTEEDMKEAAKLLHELGAKAVLIKGGHLE 181 (263)
T ss_pred cccChHHHHHHHHHhhccCeEecCCHHHHHH---------HcCC----CccCCHHHHHHHHHHHHHhCCCEEEEcCCCCC
Confidence 3456677777774 4443 455543222100 0111 36789999999999999999998887788876
Q ss_pred CCCCcCCCCcEEEEcCCCCCcEEeecC--CCeEecCCCCcHHHHHHHHccCCCeeC
Q 011962 187 EGHTLSPNGGVCIDLSLMKSVKALHIE--DMDVVVEPGIGWMELNEYLEPYGLFFP 240 (474)
Q Consensus 187 ~g~~~~~~~givIdl~~m~~i~~id~~--~~~v~V~aGv~~~~L~~~l~~~Gl~~~ 240 (474)
. .. ..++.|-. ....+... +..=+=+.|+++......-..+|+.+.
T Consensus 182 ~---~~--~D~l~~~~---~~~~f~~~ri~t~~tHGTGCTlSaAIaa~LA~G~~l~ 229 (263)
T COG0351 182 G---EA--VDVLYDGG---SFYTFEAPRIPTKNTHGTGCTLSAAIAANLAKGLSLE 229 (263)
T ss_pred C---Cc--eeEEEcCC---ceEEEeccccCCCCCCCccHHHHHHHHHHHHcCCCHH
Confidence 3 11 13444432 11111110 111246889999887777777787654
No 64
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=20.79 E-value=1.7e+02 Score=34.85 Aligned_cols=102 Identities=23% Similarity=0.177 Sum_probs=63.7
Q ss_pred CEEEEcCCHHHHHHHHHHhhcCCCcEEEEcCCCCCCCCCcCCCCcEEEEcCCCCCcEEeecCCCeEecCCCCcHHHHHHH
Q 011962 152 DIIVFPRSEDEVSKIVKCCDKHKVPIIPYGGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIGWMELNEY 231 (474)
Q Consensus 152 ~~Vv~P~s~eeV~~iv~~a~~~~~~v~~~GgG~s~~g~~~~~~~givIdl~~m~~i~~id~~~~~v~V~aGv~~~~L~~~ 231 (474)
.....|.|.+|+..+.+ .........|.|...=.--..+-.-.||.++...+..++.++..+++++++++.++.+.
T Consensus 215 ~~W~~P~sl~eL~~~~~----~~~~~~Lv~GNT~~gv~~r~~~~~~~Id~~~v~el~~~~~~~~gi~lGa~~sls~~~~~ 290 (1257)
T KOG0430|consen 215 IRWYWPVSLEELFELKA----NKPDAKLVAGNTAHGVYRRSPDYQKFIDVSGVPELKALNVDDNGLELGAALSLSETMEL 290 (1257)
T ss_pred cEEeCcccHHHHHHHHh----cCcceEEEeccccceEEeccCCCcceechhcCchhhhcccCCCceEEcccccHHHHHHH
Confidence 35688999999999988 33344455555554111111223456777765544445556778999999999998888
Q ss_pred HccCCC-e-----------eCCCCC----CCceecccccccc
Q 011962 232 LEPYGL-F-----------FPLDPG----PGATIGGMCATRC 257 (474)
Q Consensus 232 l~~~Gl-~-----------~~~~~~----~~~tvGG~i~~~~ 257 (474)
|.+.-- . +....+ ..+|+||.+.+..
T Consensus 291 l~~~~~~~~~~~~~~~~~hl~~~A~~~IRN~atigGnI~~~~ 332 (1257)
T KOG0430|consen 291 LRKLVKRPGFEYFKALWEHLKWFANVQIRNVGTIGGNICTKA 332 (1257)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHhcccceeccccccceeEecc
Confidence 755321 1 111111 2589999997763
No 65
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=20.56 E-value=66 Score=32.61 Aligned_cols=29 Identities=10% Similarity=0.318 Sum_probs=22.0
Q ss_pred cCCHHHHHHHHHHhhcCCCcEEEE--cCCCC
Q 011962 157 PRSEDEVSKIVKCCDKHKVPIIPY--GGATS 185 (474)
Q Consensus 157 P~s~eeV~~iv~~a~~~~~~v~~~--GgG~s 185 (474)
.-|.+|+++++++|+++||.|+|- .=||.
T Consensus 69 ~yT~~di~~lv~yA~~~gI~VIPeid~PGH~ 99 (351)
T PF00728_consen 69 YYTKEDIRELVAYAKERGIEVIPEIDTPGHA 99 (351)
T ss_dssp EBEHHHHHHHHHHHHHTT-EEEEEEEESSS-
T ss_pred cCCHHHHHHHHHHHHHcCCceeeeccCchHH
Confidence 347799999999999999999973 34444
No 66
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=20.42 E-value=1.7e+02 Score=24.79 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=30.0
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHhhcCCCcEEE-EcCCCC
Q 011962 148 VNIPDIIVFPRSEDEVSKIVKCCDKHKVPIIP-YGGATS 185 (474)
Q Consensus 148 ~~~P~~Vv~P~s~eeV~~iv~~a~~~~~~v~~-~GgG~s 185 (474)
.+.+..|+...|++|+.++.+.|++.|++... +-.|..
T Consensus 48 ~g~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i~Dag~T 86 (116)
T PF01981_consen 48 NGQKKIVLKVPSEEELLELAKKAKEAGLPHYLIRDAGRT 86 (116)
T ss_dssp TTTSEEEEEESSHHHHHHHHHHHHHTT-SEEEEEETSSS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHCCCCEEEEEECCCC
Confidence 35788999999999999999999999998654 344433
No 67
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=20.08 E-value=3.1e+02 Score=30.49 Aligned_cols=82 Identities=18% Similarity=0.323 Sum_probs=49.5
Q ss_pred CCCE-EEEcCCHHHHHHHHHHhhcCC-CcEEEE---cCCCCCCCCCcCCCCcEEEEcCCCCCcEEeecCCCeEecCCCCc
Q 011962 150 IPDI-IVFPRSEDEVSKIVKCCDKHK-VPIIPY---GGATSIEGHTLSPNGGVCIDLSLMKSVKALHIEDMDVVVEPGIG 224 (474)
Q Consensus 150 ~P~~-Vv~P~s~eeV~~iv~~a~~~~-~~v~~~---GgG~s~~g~~~~~~~givIdl~~m~~i~~id~~~~~v~V~aGv~ 224 (474)
.|-. |..|++++|+++++.+|..++ -|+.+| |.|... ......-.++..+ ..+ +......+.+.=|..
T Consensus 440 iPnmvi~aP~de~el~~ml~ta~~~~~gP~AiRyPrg~~~~~----~~~~~~~~~~~Gk-~~i--~~~G~~vail~~G~~ 512 (627)
T COG1154 440 IPNMVIMAPRDEEELRQMLYTALAQDDGPVAIRYPRGNGVGV----ILTPELEPLEIGK-GEL--LKEGEKVAILAFGTM 512 (627)
T ss_pred CCCcEEecCCCHHHHHHHHHHHHhcCCCCeEEEecCCCCCCC----Ccccccccccccc-eEE--EecCCcEEEEecchh
Confidence 5555 566999999999999999988 588764 544432 1111122344433 111 233445566767766
Q ss_pred HH---HHHHHHccCCCe
Q 011962 225 WM---ELNEYLEPYGLF 238 (474)
Q Consensus 225 ~~---~L~~~l~~~Gl~ 238 (474)
+. ++.+.|.++|+.
T Consensus 513 ~~~al~vae~L~~~Gi~ 529 (627)
T COG1154 513 LPEALKVAEKLNAYGIS 529 (627)
T ss_pred hHHHHHHHHHHHhcCCC
Confidence 54 455666777764
Done!