BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011963
(474 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449441810|ref|XP_004138675.1| PREDICTED: pre-mRNA-processing ATP-dependent RNA helicase prp5-like
[Cucumis sativus]
gi|449517699|ref|XP_004165882.1| PREDICTED: pre-mRNA-processing ATP-dependent RNA helicase prp5-like
[Cucumis sativus]
Length = 562
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 265/478 (55%), Positives = 334/478 (69%), Gaps = 22/478 (4%)
Query: 1 MTKGDDAVMRRRNKAKIKKLNNKN-TSSNVSARVAAVIAAKKRRKSGKRRQCQGMCFSLP 59
M KGDDA+ R+RNKA KKL +K+ SS VSARVA++IAAKKRR SGKRRQCQGMCFSLP
Sbjct: 1 MAKGDDALTRKRNKASRKKLRSKSGDSSAVSARVASIIAAKKRRMSGKRRQCQGMCFSLP 60
Query: 60 TLDDPFNDRYDKRETETKATKKRNSLQLDKNKNAFVKGKSAVSKKETKRDNNEKPGHLEQ 119
T DDP+NDR K++T+ K +K +K F K KS + T RD
Sbjct: 61 TPDDPYNDRNGKKDTKVKPSKS--------SKREFPKEKSTSAPNGTLRD---------V 103
Query: 120 TKEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHLNGKSCANGHHGQACEKLDCPSKFL 179
E A + K +L ++ + ER + + N K G + E PSKFL
Sbjct: 104 CFENARSSKEGSGGTLPSGRVAKRSKTDPERTKEYGNAKGSVQGFQEEDSESSVAPSKFL 163
Query: 180 ILCLNAIENAMRHDGVEQDN-PLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVA 238
ILCL+AIENA+ HD ++ N PLF ++WGIEFWKCYSS KDIL+TSG SST +IAW+V+
Sbjct: 164 ILCLSAIENALYHDSIKSINKPLFADTWGIEFWKCYSSGKDILDTSGLSSTDEKIAWVVS 223
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ 298
+AADSIARKEKEG SF+ PFLLFLV +QEKA ++RS+CKPLKA G+HTVS+HPGA++ HQ
Sbjct: 224 SAADSIARKEKEGSSFSSPFLLFLVPNQEKATQIRSMCKPLKALGVHTVSIHPGASLGHQ 283
Query: 299 ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSL---IRQSI 355
I GL+SCEPEFLVSTPERLL+LV+++AID+SGVSLLVVD L+SLS+G L + IR+SI
Sbjct: 284 IQGLKSCEPEFLVSTPERLLELVAMQAIDISGVSLLVVDGLESLSRGGYLDMTQSIRKSI 343
Query: 356 SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKIL 415
S K HT+VF+D + VP +Q+LL G I RLSLN SVA QSACIIQS+N S++EK+
Sbjct: 344 SSKLHTIVFSDSFSCAYVPFIQSLLGGPIRRLSLNTSVACQSACIIQSINFYTSEKEKLS 403
Query: 416 KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIKN 473
K IQ LD A G +PLK+L+I+GK+ +L + LK KG+ I G+ C V IKN
Sbjct: 404 KVIQALDRANGSQIRPQPLKMLFILGKECNVHDLAAALKFKGHDIVAGALCGVPEIKN 461
>gi|224109924|ref|XP_002315356.1| predicted protein [Populus trichocarpa]
gi|222864396|gb|EEF01527.1| predicted protein [Populus trichocarpa]
Length = 491
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 245/482 (50%), Positives = 300/482 (62%), Gaps = 93/482 (19%)
Query: 1 MTKGDDAVMRRRNKAKIKKLNNKNTSSNVSARVAAVIAAKKRRKSGKRRQCQGMCFSLPT 60
M KGDDAV +++NK + KK+ + +S VSARVA++IAAKKRR SGKRR CQGMCFSLPT
Sbjct: 1 MAKGDDAVAKKKNKERRKKMQKEGSS--VSARVASIIAAKKRRLSGKRRMCQGMCFSLPT 58
Query: 61 LDDPFNDRYDKRETETKATKKRNSLQLDKNKNAFVKGKSAVSKKETKRDNNEKPGHLEQT 120
LDDPFN D+N GK KKETK KP +
Sbjct: 59 LDDPFN---------------------DRN------GKLEFQKKETKN----KPS--ARK 85
Query: 121 KEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHLNGKSCANGHHGQACEKLDCPSKFLI 180
EKA A E +DCPSKFL+
Sbjct: 86 NEKAF------------------------------------------ARENMDCPSKFLM 103
Query: 181 LCLNAIENAMRHDGV---EQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIV 237
LN IE A+RH+G ++D LFV+ WG+EF KCYS+ KDILETSGSS T QIAW+V
Sbjct: 104 YSLNEIEKALRHEGTYNDDEDESLFVSPWGVEFLKCYSTGKDILETSGSSCTTEQIAWVV 163
Query: 238 ATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDH 297
+ AAD I RKE+E S P LFLV SQE+A KVR VCKPLKA GIHTVS+HPG++IDH
Sbjct: 164 SMAADIIVRKEEEDLSVPSPSFLFLVPSQEEAVKVRMVCKPLKALGIHTVSVHPGSSIDH 223
Query: 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKG---DTLSLIRQS 354
QI GL SCEPEFLVSTP+RLL+LVSLKAID+SGVS LVVD ++SL G + L IRQS
Sbjct: 224 QIHGLASCEPEFLVSTPDRLLELVSLKAIDISGVSFLVVDGVESLYNGGCLNALKSIRQS 283
Query: 355 ISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKI 414
ISG TVVFN+ + VP +QNLLLGSI RLS++QS+ QSACI+Q++N+C S+EE++
Sbjct: 284 ISGSLRTVVFNNFFSGACVPVLQNLLLGSICRLSIDQSIPIQSACIVQTINLCTSEEERL 343
Query: 415 LKGI--QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSHIK 472
LK Q LD+ + L VLY+VG D+ NLV L+ GY++S SN +S+
Sbjct: 344 LKVCTSQYLDNCF--------LLVLYVVGNDNSSFNLVKMLEINGYTVSVESNRSISNDD 395
Query: 473 NR 474
NR
Sbjct: 396 NR 397
>gi|225449714|ref|XP_002268926.1| PREDICTED: uncharacterized protein LOC100260841 isoform 2 [Vitis
vinifera]
Length = 407
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 237/412 (57%), Positives = 305/412 (74%), Gaps = 13/412 (3%)
Query: 1 MTKGDDAVMRRRNKAKIKKLNNKNTSSNVSARVAAVIAAKKRRKSGKRRQCQGMCFSLPT 60
M KGDDA+ R++NK+ KKL+ ++SS VSARVAA+IA+KKRRKSGKRR C+GMCFSLPT
Sbjct: 1 MAKGDDAIQRKKNKSNRKKLHKDSSSSAVSARVAAIIASKKRRKSGKRRICEGMCFSLPT 60
Query: 61 LDDPFNDRYDKRETETKATKKRNSLQLDKNKNAFVKGKSAVSKKETKRDNNEKPGHLEQT 120
+DPFN+R++K++++ + TKK + D ++ G + T N+ H ++
Sbjct: 61 PEDPFNERHEKKDSKRQKTKKLVPSRQDGGLSS--NGTNTALTNGTLDGNHVNVDH-QEL 117
Query: 121 KEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHLNGKS-CANGHHGQACEKLDCPSKFL 179
K N+KN Q + L ID V G E+ ++ L GK +G Q+CE DCPSKFL
Sbjct: 118 KRHVKNIKNEQKEVLPSIDNV---GGKSEKGKIPLPGKGRIVHGQQQQSCENSDCPSKFL 174
Query: 180 ILCLNAIENAMRHDGV---EQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWI 236
ILCL +I++A++ D + ++D PLFVN WG+EFWKCYSS +ILETSG+ ST+ QIAW+
Sbjct: 175 ILCLKSIQSALQQDVIFNFKEDKPLFVNEWGVEFWKCYSSGINILETSGACSTLEQIAWM 234
Query: 237 VATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAID 296
++TAAD+IARKEKEG T PFLLFLV SQEKAAKVR+VCKPLKA GIHTVSLHPGA++D
Sbjct: 235 ISTAADTIARKEKEGLFLTSPFLLFLVPSQEKAAKVRAVCKPLKALGIHTVSLHPGASLD 294
Query: 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSL---IRQ 353
HQI GL+SCEPEFLV+TPERLL+L+SLKAID+SGVSLLVVD LD+L KG L + IRQ
Sbjct: 295 HQIHGLKSCEPEFLVATPERLLELISLKAIDISGVSLLVVDGLDTLCKGGYLDMIKSIRQ 354
Query: 354 SISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVN 405
SISG PH VVF++ + TSVP V++LL GS RL L S+ +QSACI QS++
Sbjct: 355 SISGNPHAVVFSERSSCTSVPGVEDLLRGSYCRLPLKGSINNQSACIAQSIH 406
>gi|356500419|ref|XP_003519029.1| PREDICTED: pre-mRNA-processing ATP-dependent RNA helicase prp5-like
[Glycine max]
Length = 563
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 211/427 (49%), Positives = 282/427 (66%), Gaps = 27/427 (6%)
Query: 50 QCQGMCFSLPTLDDPFNDRYDKRETETKATKKRNSLQ----LDKNKNAFVKGK-SAVSKK 104
CQGMCFSLPTLDDPFNDR K ET+TK KK++ + +D GK AV +
Sbjct: 48 MCQGMCFSLPTLDDPFNDRGGKEETKTKGPKKKSHSKPKDKMDHLNGKSADGKKGAVGGR 107
Query: 105 ETKRDNNEKPGHLEQTKEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHLNGKSCANGH 164
+ R+ N+ L++ E N K ++ N ER + + + G
Sbjct: 108 KIARELND----LQRENESVTASNNLTHKCII----------NSERKNIDMTEMAHLCGT 153
Query: 165 HGQACEKLDCPSKFLILCLNAIENAMRHDGVEQD---NPLFVNSWGIEFWKCYSSAKDIL 221
+ C+ + PSKF+ CL++IENA+RH D N F+N WG+EF KCYS+ KD++
Sbjct: 154 KQRDCDISEFPSKFIFWCLSSIENALRHGDAYTDGEGNSFFLNPWGLEFLKCYSTGKDLI 213
Query: 222 ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA 281
ETSG+S+T QIAW+V+ AAD+ RKEKEG SF GPFLLFLV SQEK+ +VR+VCKPLK+
Sbjct: 214 ETSGTSATAEQIAWMVSGAADTFVRKEKEGLSFPGPFLLFLVPSQEKSTQVRTVCKPLKS 273
Query: 282 FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS 341
GIHTVS+HPGA++DHQI GL++CEPEFLVSTPERLL+LVS KAID+SGVS+LV+D L++
Sbjct: 274 VGIHTVSIHPGASLDHQIQGLKTCEPEFLVSTPERLLELVSTKAIDISGVSMLVIDGLNT 333
Query: 342 L---SKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSA 398
+ DT+ I+ ISG P V+FNDC+++ S+P V+ LL GSI R+SLN S+ S S+
Sbjct: 334 ICSAGHADTVKSIKNCISGNPRVVIFNDCVSHMSIPMVRYLLTGSICRVSLNNSINSLSS 393
Query: 399 CIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
IIQSV VC S+E+K++ I+ LD + + +LYI+ KD K LV TLK KGY
Sbjct: 394 YIIQSVEVCTSEEDKVVMSIEALDQFQSNSTQNS--NMLYILSKDVKCHKLVKTLKSKGY 451
Query: 459 SISTGSN 465
S+S S+
Sbjct: 452 SVSLDSD 458
>gi|357439969|ref|XP_003590262.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355479310|gb|AES60513.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 532
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 238/471 (50%), Positives = 306/471 (64%), Gaps = 52/471 (11%)
Query: 1 MTKGDDAVMRRRNKAKIKKLNNKNTSSNVSARVAAVIAAKKRRKSGKRRQCQGMCFSLPT 60
M KGDD+V+++ NK KK N+KN+ VSA++AAVIA+KKRRK+GKRR C+GMCFSLP+
Sbjct: 1 MAKGDDSVLKKHNKKLRKKQNSKNS---VSAKIAAVIASKKRRKAGKRRICEGMCFSLPS 57
Query: 61 LDDPFNDRYDKRETETKATKKRNSLQLDKNKNAFVKGKSAVSKKETKRDNNEKPGHLEQT 120
LDDPFNDR K E + K KK+ S Q K K VKGKS +K T
Sbjct: 58 LDDPFNDRQGKPEFKKKDPKKKTSSQ--KEKTTPVKGKSVPGEKGT-------------- 101
Query: 121 KEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHLNGKSCANGHHGQACEKLDCPSKFLI 180
A+ + +KS E EV C H E D PSKF+
Sbjct: 102 ---AVGRNGANNKS--------------EMVEV------CCGEQHDN--EVSDFPSKFVF 136
Query: 181 LCLNAIENAMRHDGVEQD---NPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIV 237
CL+AIENA+RHD D N F+N WG+EF K +S+ KD+++T G+ +T QIAW+V
Sbjct: 137 WCLSAIENALRHDDAYTDGEGNSFFLNPWGLEFSKHFSTGKDLIDTGGTFATTEQIAWMV 196
Query: 238 ATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDH 297
+ AAD RKEK+G S PFLLFLV S++KA +VR+VCKPLK+ GIHTVS+HPGA++DH
Sbjct: 197 SAAADIFVRKEKQGLSLDTPFLLFLVPSEKKAGQVRTVCKPLKSVGIHTVSVHPGASLDH 256
Query: 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQS 354
QI GL+SCEPEFL+STPERLL+LVSLKAID+SG+S+LV+D D++ K D + I++
Sbjct: 257 QIQGLKSCEPEFLISTPERLLELVSLKAIDISGISMLVIDGFDAICKAGHADAIKSIKKF 316
Query: 355 ISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKI 414
ISG P VVFND +TS+P V++LL G I R+S+N S+AS S+CI+QSV VC SDE+K+
Sbjct: 317 ISGNPSLVVFNDSFNHTSIPVVRHLLTGPICRISINNSIASLSSCIVQSVQVCTSDEDKL 376
Query: 415 LKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSN 465
+K I+VL HS L LYI+ KD K LV TLK G S S S+
Sbjct: 377 VKSIEVLRQFRSSQTHSSNL--LYILRKDVKCHKLVKTLKSMGCSTSLDSD 425
>gi|255580126|ref|XP_002530895.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223529548|gb|EEF31501.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 493
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 202/330 (61%), Positives = 242/330 (73%), Gaps = 19/330 (5%)
Query: 150 RAEVHLNGKSCANGHHGQACEKLDCPSKFLILCLNAIENAMRHDGV--EQDNPLFVNSWG 207
R +V LNG H QAC+ D PSKF ILCLNAIE A+RHDG +++ PL VN WG
Sbjct: 85 REKVQLNGNDL--NHQEQACDYSDGPSKFFILCLNAIEKALRHDGTYNDEEKPLLVNPWG 142
Query: 208 IEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQE 267
+EF K S KDILETSGSS TI QIAWIV+ AAD+IARKEKEG SF+ PFLLFLV SQE
Sbjct: 143 LEFLKFCSIGKDILETSGSSCTIEQIAWIVSIAADAIARKEKEGLSFSSPFLLFLVPSQE 202
Query: 268 KAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
KAAKVR VCKPLK G+HTVSLH GA++DHQI GL+SCEPEFLVSTPERL++L+SLKAID
Sbjct: 203 KAAKVRMVCKPLKDLGVHTVSLHAGASLDHQIRGLKSCEPEFLVSTPERLMELISLKAID 262
Query: 328 VSGVSLLVVDRLDSLSKGDTL-SL--IRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSI 384
++GVS LVVD LDSL + +L SL IRQSISG PHTV FN+ + VPA+QNL +GSI
Sbjct: 263 ITGVSFLVVDGLDSLYQDGSLGSLKSIRQSISGNPHTVAFNNLFNHACVPALQNLFVGSI 322
Query: 385 NRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDS 444
NRLSL+ S+ SQSACI Q++ VC S+++K+ K S LK+L+IV +
Sbjct: 323 NRLSLSDSICSQSACIFQTIEVCTSEQKKLSK------------LCSHRLKLLFIVENNK 370
Query: 445 KFQNLVSTLKCKGYSISTGSNCIVSHIKNR 474
K +LV LK GYS+ST SNC VS++ R
Sbjct: 371 KAASLVKILKSNGYSVSTESNCEVSNVDTR 400
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 70/94 (74%), Gaps = 5/94 (5%)
Query: 1 MTKGDDAVMRRRNKAKIKKLNNKNTSSNVSARVAAVIAAKKRRKSGKRRQCQGMCFSLPT 60
M KGDD V ++RNKAK KKLN +N SSNVSARVA++IAAKKRR SGKRR CQGMCFSLPT
Sbjct: 1 MAKGDDTVTKKRNKAKRKKLNREN-SSNVSARVASIIAAKKRRLSGKRRMCQGMCFSLPT 59
Query: 61 LDDPFNDRYDKRETET----KATKKRNSLQLDKN 90
LDDPFN+R+ + + K R +QL+ N
Sbjct: 60 LDDPFNERHGRMDINVKDKKKKVNTREKVQLNGN 93
>gi|296090406|emb|CBI40225.3| unnamed protein product [Vitis vinifera]
Length = 370
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 225/412 (54%), Positives = 289/412 (70%), Gaps = 50/412 (12%)
Query: 1 MTKGDDAVMRRRNKAKIKKLNNKNTSSNVSARVAAVIAAKKRRKSGKRRQCQGMCFSLPT 60
M KGDDA+ R++NK+ KKL+ ++SS VSARVAA+IA+KKRRKSGKRR C+GMCFSLPT
Sbjct: 1 MAKGDDAIQRKKNKSNRKKLHKDSSSSAVSARVAAIIASKKRRKSGKRRICEGMCFSLPT 60
Query: 61 LDDPFNDRYDKRETETKATKKRNSLQLDKNKNAFVKGKSAVSKKETKRDNNEKPGHLEQT 120
+DPFN+R++K++++ + TKK L +
Sbjct: 61 PEDPFNERHEKKDSKRQKTKK-----------------------------------LVPS 85
Query: 121 KEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHLNGKS-CANGHHGQACEKLDCPSKFL 179
++ N + +L G ++ + L GK +G Q+CE DCPSKFL
Sbjct: 86 RQDGGLSSNGTNTAL--------TNGTLDGNHIPLPGKGRIVHGQQQQSCENSDCPSKFL 137
Query: 180 ILCLNAIENAMRHDGV---EQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWI 236
ILCL +I++A++ D + ++D PLFVN WG+EFWKCYSS +ILETSG+ ST+ QIAW+
Sbjct: 138 ILCLKSIQSALQQDVIFNFKEDKPLFVNEWGVEFWKCYSSGINILETSGACSTLEQIAWM 197
Query: 237 VATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAID 296
++TAAD+IARKEKEG T PFLLFLV SQEKAAKVR+VCKPLKA GIHTVSLHPGA++D
Sbjct: 198 ISTAADTIARKEKEGLFLTSPFLLFLVPSQEKAAKVRAVCKPLKALGIHTVSLHPGASLD 257
Query: 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSL---IRQ 353
HQI GL+SCEPEFLV+TPERLL+L+SLKAID+SGVSLLVVD LD+L KG L + IRQ
Sbjct: 258 HQIHGLKSCEPEFLVATPERLLELISLKAIDISGVSLLVVDGLDTLCKGGYLDMIKSIRQ 317
Query: 354 SISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVN 405
SISG PH VVF++ + TSVP V++LL GS RL L S+ +QSACI QS++
Sbjct: 318 SISGNPHAVVFSERSSCTSVPGVEDLLRGSYCRLPLKGSINNQSACIAQSIH 369
>gi|20259502|gb|AAM13871.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
Length = 522
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 218/484 (45%), Positives = 294/484 (60%), Gaps = 89/484 (18%)
Query: 1 MTKGDDAVMRRRNKAKIKKLNNKNTSSNVSARVAAVIAAKKRRKSGKRRQCQGMCFSLPT 60
M KGDD V R++NK KK++ KN ++ VSAR+AA+IAAKKRRKSGKR CQGMCF+LPT
Sbjct: 21 MAKGDDNVQRKKNKVTRKKMSRKNDTATVSARIAAIIAAKKRRKSGKRSMCQGMCFTLPT 80
Query: 61 LDDPFNDRYDKRETETKATKKRNSLQLDKNKNAFVKGKSAVSKKETKRDNNEKPGHLEQT 120
L+DPFN+R K + K K K +++ D P
Sbjct: 81 LEDPFNERQGKAD--------------------ITKKKKKKKKVKSREDKKPSP------ 114
Query: 121 KEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHLNGKSCANGHHGQACEKLDCPSKFLI 180
+ I+GVEK G + ++LN
Sbjct: 115 ---------------MSIEGVEKMDGPPKFLMLNLN------------------------ 135
Query: 181 LCLNAIENAMRHD---GVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIV 237
IE++ R D + D LF +SWGIEFWKCYSS DIL+TSG SST+ QIAWIV
Sbjct: 136 ----EIESSFRKDITYSEQHDKSLFTSSWGIEFWKCYSSGNDILDTSGMSSTVEQIAWIV 191
Query: 238 ATAADSIARKEKEGFSFT------GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHP 291
+TAAD+IAR+EK+ PFLL+LV SQ KA++VRSVCK LK GIHTVSLH
Sbjct: 192 STAADAIARREKDEVEEEEELLGNSPFLLYLVPSQSKASQVRSVCKALKGIGIHTVSLHQ 251
Query: 292 GAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSL- 350
GA +DHQI+GL+S EPEF+V+TPERLL++V+LK +D+S VSLLV+D L SL G L+
Sbjct: 252 GAPLDHQISGLKSVEPEFIVATPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAV 311
Query: 351 --IRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCA 408
I+Q+IS K T+VFN+ + + +PAVQ+ L GS+NR+++N+SVASQ +CI Q+V+VCA
Sbjct: 312 KSIKQAISSKHQTIVFNNSFSASIIPAVQSFLGGSVNRVTVNESVASQGSCITQTVSVCA 371
Query: 409 SDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIV 468
S+E+K+ K + H S K++YIV K+ F+ +++ LK KG S+ST S+ +
Sbjct: 372 SEEKKLQK--------FAKHLDSSSSKLIYIVTKEESFKKIMAILKLKGISVSTSSDSKL 423
Query: 469 SHIK 472
S +K
Sbjct: 424 SEVK 427
>gi|15226904|ref|NP_180427.1| P-loop containing nucleoside triphosphate hydrolase-like protein
[Arabidopsis thaliana]
gi|4580397|gb|AAD24375.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|29824179|gb|AAP04050.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|330253053|gb|AEC08147.1| P-loop containing nucleoside triphosphate hydrolase-like protein
[Arabidopsis thaliana]
Length = 502
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 218/484 (45%), Positives = 294/484 (60%), Gaps = 89/484 (18%)
Query: 1 MTKGDDAVMRRRNKAKIKKLNNKNTSSNVSARVAAVIAAKKRRKSGKRRQCQGMCFSLPT 60
M KGDD V R++NK KK++ KN ++ VSAR+AA+IAAKKRRKSGKR CQGMCF+LPT
Sbjct: 1 MAKGDDNVQRKKNKVTRKKMSRKNDTATVSARIAAIIAAKKRRKSGKRSMCQGMCFTLPT 60
Query: 61 LDDPFNDRYDKRETETKATKKRNSLQLDKNKNAFVKGKSAVSKKETKRDNNEKPGHLEQT 120
L+DPFN+R K + K K K +++ D P
Sbjct: 61 LEDPFNERQGKAD--------------------ITKKKKKKKKVKSREDKKPSP------ 94
Query: 121 KEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHLNGKSCANGHHGQACEKLDCPSKFLI 180
+ I+GVEK G + ++LN
Sbjct: 95 ---------------MSIEGVEKMDGPPKFLMLNLN------------------------ 115
Query: 181 LCLNAIENAMRHD---GVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIV 237
IE++ R D + D LF +SWGIEFWKCYSS DIL+TSG SST+ QIAWIV
Sbjct: 116 ----EIESSFRKDITYSEQHDKSLFTSSWGIEFWKCYSSGNDILDTSGMSSTVEQIAWIV 171
Query: 238 ATAADSIARKEKEGFSFT------GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHP 291
+TAAD+IAR+EK+ PFLL+LV SQ KA++VRSVCK LK GIHTVSLH
Sbjct: 172 STAADAIARREKDEVEEEEELLGNSPFLLYLVPSQSKASQVRSVCKALKGIGIHTVSLHQ 231
Query: 292 GAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSL- 350
GA +DHQI+GL+S EPEF+V+TPERLL++V+LK +D+S VSLLV+D L SL G L+
Sbjct: 232 GAPLDHQISGLKSVEPEFIVATPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAV 291
Query: 351 --IRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCA 408
I+Q+IS K T+VFN+ + + +PAVQ+ L GS+NR+++N+SVASQ +CI Q+V+VCA
Sbjct: 292 KSIKQAISSKHQTIVFNNSFSASIIPAVQSFLGGSVNRVTVNESVASQGSCITQTVSVCA 351
Query: 409 SDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIV 468
S+E+K+ K + H S K++YIV K+ F+ +++ LK KG S+ST S+ +
Sbjct: 352 SEEKKLQK--------FAKHLDSSSSKLIYIVTKEESFKKIMAILKLKGISVSTSSDSKL 403
Query: 469 SHIK 472
S +K
Sbjct: 404 SEVK 407
>gi|297822571|ref|XP_002879168.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297325007|gb|EFH55427.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 505
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 166/317 (52%), Positives = 228/317 (71%), Gaps = 22/317 (6%)
Query: 170 EKLDCPSKFLILCLNAIENAMRHDGV---EQDNPLFVNSWGIEFWKCYSSAKDILETSGS 226
+K+D P KFL+L LN IE++ R D + D LF ++WGIEFWKC+SS KDILETSG
Sbjct: 102 KKMDGPPKFLMLNLNEIESSFRKDSTYSEQHDKSLFTSTWGIEFWKCFSSGKDILETSGM 161
Query: 227 SSTIVQIAWIVATAADSIARKEKEGFSFT--------GPFLLFLVSSQEKAAKVRSVCKP 278
SST+ QIAWIV++AAD+IAR+EK+ PFLL+LV SQ KA++VRSVCK
Sbjct: 162 SSTVEQIAWIVSSAADAIARREKDEEEEEEEEEEVGNSPFLLYLVPSQSKASQVRSVCKA 221
Query: 279 LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDR 338
LK GIHTVSLH GA++DHQI+GL+S EPEF+V+TPERLL++V+LK +D+S VSLLV+D
Sbjct: 222 LKGIGIHTVSLHQGASLDHQISGLKSVEPEFIVATPERLLEIVNLKGVDISSVSLLVIDE 281
Query: 339 LDSLSKG---DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVAS 395
L SL G D + I+Q+IS K ++VFND + +++PAVQ+LL SINR++++ SVAS
Sbjct: 282 LGSLCTGGYLDAVKSIKQAISSKHQSIVFNDSFSDSTIPAVQSLLGRSINRVTVSDSVAS 341
Query: 396 QSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKC 455
Q +CIIQ+VNVCAS+E+K+ K + +H S K+++IV K+ F+ + + LK
Sbjct: 342 QGSCIIQTVNVCASEEQKLQK--------FAEHLDSSSSKIIHIVTKEESFKKIKALLKL 393
Query: 456 KGYSISTGSNCIVSHIK 472
KG S+S S+ +S +K
Sbjct: 394 KGLSVSINSDSKISEVK 410
>gi|414882116|tpg|DAA59247.1| TPA: ATP-dependent RNA helicase [Zea mays]
Length = 525
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 194/466 (41%), Positives = 277/466 (59%), Gaps = 50/466 (10%)
Query: 1 MTKGDDAVMRRRNKAKIKKLNNKNTSSNVSARVAAVIAAKKRRKSGKRRQCQGMCFSLPT 60
M KGDDA+ R+RN+ + K+L + + VSARVAA+IA+K RRKSGKRR C+GMCFSLPT
Sbjct: 1 MAKGDDALARKRNRVRRKRLRSSENA--VSARVAAIIASKHRRKSGKRRACEGMCFSLPT 58
Query: 61 LDDPFNDRYDKRETETKATKKRNSLQLDKNKNAFVKGKSAVSKKETKRDNNEKPGHLEQT 120
DDPFN+R+ R+ + ++ + K K A +KK+ + +
Sbjct: 59 PDDPFNERHG-RKHKLDDEPADDTAADAAEDSGNPKKKGANTKKQ-----QPVAKYGAEA 112
Query: 121 KEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHLNGKSCANGHHGQACEKLDCPSKFLI 180
K KA+ + + G E G+ +R PSKFL+
Sbjct: 113 KSKAVRERET---------GAEVVRGDFDR------------------------PSKFLV 139
Query: 181 LCLNAIENAMRHDGVEQDNPLF-VNSWGIEFWKCYSS--AKDILETSGSSSTIVQIAWIV 237
+CLNAI +A+ + E + WG+E W+C S+ D+L+ SG+ +T+ Q AW+V
Sbjct: 140 VCLNAIRDAVAPE--EGGGSIHGAGDWGVELWRCCSAQAPSDVLDASGACATVAQTAWLV 197
Query: 238 ATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDH 297
+TA D +ARKE+ G + PFLL+LVSSQ+KAA+VRS+CKPLK GIH+VSLHPGA+I+H
Sbjct: 198 STACDIVARKERHGMVVSCPFLLYLVSSQDKAAQVRSICKPLKPLGIHSVSLHPGASIEH 257
Query: 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL---SKGDTLSLIRQS 354
QI+GL++CEPEFL++TPERLL+LVSLKAID+SGVS+LV+D L + D + IR +
Sbjct: 258 QISGLKTCEPEFLIATPERLLELVSLKAIDISGVSMLVIDGLKCFVDHNVSDKIFSIRDA 317
Query: 355 ISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKI 414
IS +F D +NLL G I +LS+N SV+S+SA I Q V+ C S+E K
Sbjct: 318 ISNNLQITIFTDPSDKNIATMAKNLLRGRITKLSINDSVSSRSAFIAQHVHFCPSEELKT 377
Query: 415 LKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460
K ++L+ DH + KVL + D K + + +LK + ++
Sbjct: 378 TKVKEILEQILQDH-PKKTSKVLLVAASDKKARLMSLSLKLENCTV 422
>gi|226496141|ref|NP_001150848.1| ATP-dependent RNA helicase [Zea mays]
gi|195642358|gb|ACG40647.1| ATP-dependent RNA helicase [Zea mays]
Length = 525
Score = 314 bits (804), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 193/466 (41%), Positives = 277/466 (59%), Gaps = 50/466 (10%)
Query: 1 MTKGDDAVMRRRNKAKIKKLNNKNTSSNVSARVAAVIAAKKRRKSGKRRQCQGMCFSLPT 60
M KGDDA+ R+RN+ + K+L + + VSARVAA+IA+K RRKSGKRR C+GMCFSLPT
Sbjct: 1 MAKGDDALARKRNRVRRKRLRSSENA--VSARVAAIIASKHRRKSGKRRACEGMCFSLPT 58
Query: 61 LDDPFNDRYDKRETETKATKKRNSLQLDKNKNAFVKGKSAVSKKETKRDNNEKPGHLEQT 120
DDPFN+R+ R+ + ++ + K K A +KK+ + +
Sbjct: 59 PDDPFNERHG-RKHKLDDEPADDTAADAAEDSGNPKKKGANTKKQ-----QPVAKYGAEA 112
Query: 121 KEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHLNGKSCANGHHGQACEKLDCPSKFLI 180
K KA+ + + G E G+ +R PSKFL+
Sbjct: 113 KSKAVRERET---------GAEVVRGDFDR------------------------PSKFLV 139
Query: 181 LCLNAIENAMRHDGVEQDNPLF-VNSWGIEFWKCYSS--AKDILETSGSSSTIVQIAWIV 237
+CLNAI +A+ + E + WG+E W+C S+ D+L+ SG+ +T+ Q AW+V
Sbjct: 140 VCLNAIRDAVAPE--EGGGSIHGAGDWGVELWRCCSAQAPSDVLDASGACATVAQTAWLV 197
Query: 238 ATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDH 297
+TA D +ARKE+ G + PFLL+LVSSQ+KAA+V+S+CKPLK GIH+VSLHPGA+I+H
Sbjct: 198 STACDIVARKERHGMVVSCPFLLYLVSSQDKAAQVQSICKPLKPLGIHSVSLHPGASIEH 257
Query: 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL---SKGDTLSLIRQS 354
QI+GL++CEPEFL++TPERLL+LVSLKAID+SGVS+LV+D L + D + IR +
Sbjct: 258 QISGLKTCEPEFLIATPERLLELVSLKAIDISGVSMLVIDGLKCFVDHNVSDKIFSIRDA 317
Query: 355 ISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKI 414
IS +F D +NLL G I +LS+N SV+S+SA I Q V+ C S+E K
Sbjct: 318 ISNNLQITIFTDPSDKNIATMAKNLLRGRITKLSINDSVSSRSAFIAQHVHFCPSEELKT 377
Query: 415 LKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460
K ++L+ DH + KVL + D K + + +LK + ++
Sbjct: 378 TKVKEILEQILQDH-PKKTSKVLLVAASDKKARLMSLSLKLENCTV 422
>gi|242082802|ref|XP_002441826.1| hypothetical protein SORBIDRAFT_08g002960 [Sorghum bicolor]
gi|241942519|gb|EES15664.1| hypothetical protein SORBIDRAFT_08g002960 [Sorghum bicolor]
Length = 529
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 198/466 (42%), Positives = 274/466 (58%), Gaps = 46/466 (9%)
Query: 1 MTKGDDAVMRRRNKAKIKKLNNKNTSSNVSARVAAVIAAKKRRKSGKRRQCQGMCFSLPT 60
M KGDDA+ R+RN+ + K+L + + VSARVAA+IA+K+RRKSGKRR C+GMCFSLPT
Sbjct: 1 MAKGDDALARKRNRVRRKRLRSSENA--VSARVAAIIASKRRRKSGKRRGCEGMCFSLPT 58
Query: 61 LDDPFNDRYDKRETETKATKKRNSLQLDKNKNAFVKGKSAVSKKETKRDNNEKPGHLEQT 120
DDPFN+R+ K K V + T+ K G +
Sbjct: 59 PDDPFNERHGK--------------------------KRKVDDEPTEDTAAAKDG--DDP 90
Query: 121 KEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHLNGKSCANGHHGQACEKLDCPSKFLI 180
K+K N K Q + + K + G G+ LD PSKFL+
Sbjct: 91 KKKGANTKKEQPVAKAGAEAKAKAKAKSKAVRERATG-----ADEGRV--DLDRPSKFLV 143
Query: 181 LCLNAIENAMR-HDGVEQDNPLFVNSWGIEFWKCYSS--AKDILETSGSSSTIVQIAWIV 237
+CLNAI + + DG + WG+E W+C S+ D+L+ SG+ +T+ Q AW+V
Sbjct: 144 VCLNAIRDTLAPEDGGGSIH--GAGDWGVELWRCCSAQAPSDVLDASGACATVDQTAWLV 201
Query: 238 ATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDH 297
+TA D +ARKE+ G + PFLL+LV SQEKAA+VRS+CKPLK GIH+VSLHPGA+I+H
Sbjct: 202 STACDIVARKERLGMVVSCPFLLYLVPSQEKAAQVRSICKPLKPLGIHSVSLHPGASIEH 261
Query: 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL---SKGDTLSLIRQS 354
QI+GL++CEPEFL++TPERLL+LVSLKAID+S VS+LV+D L + D + IR +
Sbjct: 262 QISGLKTCEPEFLIATPERLLELVSLKAIDISSVSMLVIDGLKCFVDHNASDKIFSIRDA 321
Query: 355 ISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKI 414
IS P +F D ++LL G I +LS+N SV+S+SA I Q V+ C S+E K
Sbjct: 322 ISNNPQITIFTDPSDKKVAAMAKSLLRGRITKLSINDSVSSRSAFIAQHVHFCPSEELKT 381
Query: 415 LKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460
K ++L+ H + KVL +V D K + + S+LK K ++
Sbjct: 382 SKVKEILEGILQSH-PKKTSKVLLVVANDQKARYMSSSLKLKNCTV 426
>gi|346703300|emb|CBX25398.1| hypothetical_protein [Oryza brachyantha]
Length = 509
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 195/473 (41%), Positives = 274/473 (57%), Gaps = 61/473 (12%)
Query: 1 MTKGDDAVMRRRNKAKIKKLNNKNTSSNVSARVAAVIAAKKRRKSGKRRQCQGMCFSLPT 60
M KGDDA+ R+R++ + K++ + + VSARVA +IA+K+RRKSGKRR C+GMCFSLPT
Sbjct: 1 MAKGDDALARKRSRVRRKRMRSSENA--VSARVAGIIASKRRRKSGKRRGCEGMCFSLPT 58
Query: 61 LDDPFNDRYDKRETETKATKKRNSLQLD---KNKNAFVKGKSAVSKKETKRDN--NEKPG 115
+DPFNDR+ K+ + D K KN K +++KK+ RD N K
Sbjct: 59 PEDPFNDRHGKKRKGDDDDDDVDGPAGDASAKKKN----KKDSIAKKKPARDAAANGKSK 114
Query: 116 HLEQTKEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHLNGKSCANGHHGQACEKLDCP 175
L +T+ + DG E D P
Sbjct: 115 PLPETEREK--------------DGAE-----------------------------YDRP 131
Query: 176 SKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAK--DILETSGSSSTIVQI 233
SKFL++CLNAI +A + SWG+E W C S+A D+L+TSG +T Q
Sbjct: 132 SKFLVVCLNAIRDAAASEDGGGGGIHDTGSWGVELWNCCSAAPPTDVLDTSGLCATREQT 191
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293
AW+V+TA D +ARKEK G + PFLL+LV SQE A +VRS+CKPLK+ GIH+VSLHPGA
Sbjct: 192 AWLVSTACDIVARKEKLGVVVSCPFLLYLVPSQENAVQVRSICKPLKSLGIHSVSLHPGA 251
Query: 294 AIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ 353
+I+HQ++GL+SCEPEFL+STPERLL+LV+LKAID+SGVS+L +D L+ GD L IR
Sbjct: 252 SIEHQMSGLKSCEPEFLISTPERLLELVALKAIDISGVSMLCF--MD-LNAGDKLCSIRD 308
Query: 354 SISGKPHTVVFNDCLTYTSVPAVQNLLLG-SINRLSLNQSVASQSACIIQSVNVCASDEE 412
+I P +F+D + LL G I RL N SV S+SA + Q +++C ++
Sbjct: 309 AILSSPQITIFSDPSDRSVAALATKLLHGRKIRRLCTNDSVTSRSAFVTQKIHICPRKDQ 368
Query: 413 KILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSN 465
K K Q+L+ +H + KVL + + + Q+L S+LK + +++ S+
Sbjct: 369 KAPKVKQILEQILTNH-AKKTAKVLLVAASNHEAQHLSSSLKLQNCTVTDDSH 420
>gi|147818848|emb|CAN62967.1| hypothetical protein VITISV_032271 [Vitis vinifera]
Length = 299
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 168/305 (55%), Positives = 220/305 (72%), Gaps = 10/305 (3%)
Query: 1 MTKGDDAVMRRRNKAKIKKLNNKNTSSNVSARVAAVIAAKKRRKSGKRRQCQGMCFSLPT 60
M KGDDA+ R++NK+ KKL+ ++SS VSARVAA+IA+KKRRKSGKRR C+GMCFSLPT
Sbjct: 1 MAKGDDAIQRKKNKSNRKKLHKDSSSSAVSARVAAIIASKKRRKSGKRRICEGMCFSLPT 60
Query: 61 LDDPFNDRYDKRETETKATKKRNSLQLDKNKNAFVKGKSAVSKKETKRDNNEKPGHLEQT 120
+DPFN+R++K++++ + TKK + D ++ G + T N+ H ++
Sbjct: 61 PEDPFNERHEKKDSKRQKTKKLVPSRQDGGLSS--NGTNTALTNGTLDGNHVNVDH-QEL 117
Query: 121 KEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHLNGKS-CANGHHGQACEKLDCPSKFL 179
K N+KN Q + L ID V G E+ ++ L GK +G Q+CE DCPSKFL
Sbjct: 118 KRHVKNIKNEQKEVLPSIDNV---GGKSEKGKIPLPGKGRIVHGQQQQSCENSDCPSKFL 174
Query: 180 ILCLNAIENAMRHDGV---EQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWI 236
ILCL +I++A++ D + ++D PLFVN WG+EFWKCYSS +ILETSG+ ST+ QIAW+
Sbjct: 175 ILCLKSIQSALQQDVIFNFKEDKPLFVNEWGVEFWKCYSSGINILETSGACSTLEQIAWM 234
Query: 237 VATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAID 296
++TAAD+IARKEKEG T PFLLFLV SQEKAAKVR+VCKPLKA GIHTVSLHPGA++D
Sbjct: 235 ISTAADTIARKEKEGLFLTSPFLLFLVPSQEKAAKVRAVCKPLKALGIHTVSLHPGASLD 294
Query: 297 HQITG 301
HQI G
Sbjct: 295 HQIHG 299
>gi|346703794|emb|CBX24462.1| hypothetical_protein [Oryza glaberrima]
Length = 525
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 193/478 (40%), Positives = 277/478 (57%), Gaps = 64/478 (13%)
Query: 1 MTKGDDAVMRRRNKAKIKKLNNKNTSSNVSARVAAVIAAKKRRKSGKRRQCQGMCFSLPT 60
M KGDDA+ R+RNK + K++ + + VSARVA +IA+K+RRKSGKRR C+GMCFSLPT
Sbjct: 1 MAKGDDALARKRNKVRRKRMRSSENA--VSARVAGIIASKRRRKSGKRRACEGMCFSLPT 58
Query: 61 LDDPFNDRYDKRETETKATKKRNSLQLDKNKNAFVKGKSAVSKKETKRDNNEKPGHLEQT 120
+ D ++ R K++ + + A G+ KK+ K+ ++ +
Sbjct: 59 PE----DPFNDRH----GKKRKGDDEPTGDAPAAAAGRDESKKKKKKKKDSSAKKQPARE 110
Query: 121 KEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHLNGKSCANGHHGQACEKLDCPSKFLI 180
A S++K DG E D PSKFL+
Sbjct: 111 AAAAAANAKSREK-----DGAE-----------------------------YDRPSKFLV 136
Query: 181 LCLNAIENAMRHD----GVEQDNPLFVNSWGIEFWKCYSSAKD--ILETSGSSSTIVQIA 234
+CLNAI +A + G+ SWG+E W C S+A +L+TSG +T + A
Sbjct: 137 VCLNAIRDAAASEDGGGGIHD-----TGSWGVELWNCCSAAPPTHVLDTSGECATREKTA 191
Query: 235 WIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294
W+V+TA D +ARKEK G + PFLL+LV SQEKA +VRS+CKPLK+ GIH+VSLHPGA+
Sbjct: 192 WLVSTACDIVARKEKLGVVVSCPFLLYLVPSQEKAVQVRSICKPLKSLGIHSVSLHPGAS 251
Query: 295 IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV-VDRL---DSLSKGDTLSL 350
I+HQI+GL+SCEPEFL+STPERLL+L++LKAID+SGVS+LV +D L L+ D L
Sbjct: 252 IEHQISGLKSCEPEFLISTPERLLELIALKAIDISGVSMLVMIDGLKCFTDLNVSDKLCS 311
Query: 351 IRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGS--INRLSLNQSVASQSACIIQSVNVCA 408
IR +I P +F+D + V A+ L+G I RL N SV S+SA I Q +++C
Sbjct: 312 IRDAILSNPQITIFSD-PSDRRVAALATKLVGGKKITRLCTNDSVTSRSAFITQKIHICP 370
Query: 409 SDEEKILKGI-QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSN 465
S ++K K + ++L+ DH + KVL + D + Q+L S+LK + +++ S+
Sbjct: 371 SKDQKAPKVVKEILEQILNDHAR-KTAKVLLVTASDHEAQHLSSSLKLQNCTVTNDSH 427
>gi|218186436|gb|EEC68863.1| hypothetical protein OsI_37464 [Oryza sativa Indica Group]
Length = 524
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 140/302 (46%), Positives = 197/302 (65%), Gaps = 9/302 (2%)
Query: 171 KLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKD--ILETSGSSS 228
+ D PSKFL++CLNAI +A + SWG+E W C S+A +L+TSG +
Sbjct: 127 EYDRPSKFLVVCLNAIRDAAASEDGGGGGIHDTGSWGVELWNCCSAAPPTHVLDTSGECA 186
Query: 229 TIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVS 288
T + AW+V+TA D +ARKEK G + PFLL+LV SQEKA +VRS+CKPLK+ GIH+VS
Sbjct: 187 TREKTAWLVSTACDIVARKEKLGVVVSCPFLLYLVPSQEKAVQVRSICKPLKSLGIHSVS 246
Query: 289 LHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL---DSLSKG 345
LHPGA+I+HQI+GL+SCEPEFL+STPERLL+L++LKAID+SGVS+LV+D L L+
Sbjct: 247 LHPGASIEHQISGLKSCEPEFLISTPERLLELIALKAIDISGVSMLVIDGLKCFTDLNVS 306
Query: 346 DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGS--INRLSLNQSVASQSACIIQS 403
D L IR +I P +F+D + V A+ L+G I RL N SV S+ A I Q
Sbjct: 307 DKLCSIRDAILSNPQITIFSD-PSDRRVAALATKLVGGKKITRLCTNDSVTSRGAFITQK 365
Query: 404 VNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTG 463
+++C S ++K K ++L+ DH + KVL + D + Q+L S+LK + +++
Sbjct: 366 IHICPSKDQKAPKVKEILEQILNDHAR-KTAKVLLVTASDHEAQHLSSSLKLQNCTVTND 424
Query: 464 SN 465
S+
Sbjct: 425 SH 426
>gi|222616637|gb|EEE52769.1| hypothetical protein OsJ_35218 [Oryza sativa Japonica Group]
Length = 517
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 139/302 (46%), Positives = 196/302 (64%), Gaps = 9/302 (2%)
Query: 171 KLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKD--ILETSGSSS 228
+ D PSKFL++CLNAI +A + SWG+E W C S+A +L+TSG +
Sbjct: 120 EYDRPSKFLVVCLNAIRDAAASEDGGGGGIHDTGSWGVELWNCCSAAPPTHVLDTSGECA 179
Query: 229 TIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVS 288
T + AW+V+TA D +ARKEK + PFLL+LV SQEKA +VRS+CKPLK+ GIH+VS
Sbjct: 180 TREKTAWLVSTACDIVARKEKLAVVVSCPFLLYLVPSQEKAVQVRSICKPLKSLGIHSVS 239
Query: 289 LHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL---DSLSKG 345
LHPGA+I+HQI+GL+SCEPEFL+STPERLL+L++LKAID+SGVS+LV+D L L+
Sbjct: 240 LHPGASIEHQISGLKSCEPEFLISTPERLLELIALKAIDISGVSMLVIDGLKCFTDLNVS 299
Query: 346 DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGS--INRLSLNQSVASQSACIIQS 403
D L IR +I P +F+D + V A+ L+G I RL N SV S+ A I Q
Sbjct: 300 DKLCSIRDAILSNPQITIFSD-PSDRRVAALATKLVGGKKITRLCTNDSVTSRGAFITQK 358
Query: 404 VNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTG 463
+++C S ++K K ++L+ DH + KVL + D + Q+L S+LK + +++
Sbjct: 359 IHICPSKDQKAPKVKEILEQILNDHAR-KTAKVLLVTASDHEAQHLSSSLKLQNCTVTND 417
Query: 464 SN 465
S+
Sbjct: 418 SH 419
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 58/72 (80%), Gaps = 2/72 (2%)
Query: 1 MTKGDDAVMRRRNKAKIKKLNNKNTSSNVSARVAAVIAAKKRRKSGKRRQCQGMCFSLPT 60
M KGDDA+ R+RNK + K++ + + VSARVA +IA+K+RRKSGKRR C+GMCFSLPT
Sbjct: 1 MAKGDDALARKRNKVRRKRMRSSENA--VSARVAGIIASKRRRKSGKRRACEGMCFSLPT 58
Query: 61 LDDPFNDRYDKR 72
+DPFNDR+ K+
Sbjct: 59 PEDPFNDRHGKK 70
>gi|115487334|ref|NP_001066154.1| Os12g0147500 [Oryza sativa Japonica Group]
gi|77552995|gb|ABA95791.1| ATP-dependent RNA helicase, putative, expressed [Oryza sativa
Japonica Group]
gi|113648661|dbj|BAF29173.1| Os12g0147500 [Oryza sativa Japonica Group]
gi|215694938|dbj|BAG90129.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 528
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 139/302 (46%), Positives = 196/302 (64%), Gaps = 9/302 (2%)
Query: 171 KLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKD--ILETSGSSS 228
+ D PSKFL++CLNAI +A + SWG+E W C S+A +L+TSG +
Sbjct: 131 EYDRPSKFLVVCLNAIRDAAASEDGGGGGIHDTGSWGVELWNCCSAAPPTHVLDTSGECA 190
Query: 229 TIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVS 288
T + AW+V+TA D +ARKEK + PFLL+LV SQEKA +VRS+CKPLK+ GIH+VS
Sbjct: 191 TREKTAWLVSTACDIVARKEKLAVVVSCPFLLYLVPSQEKAVQVRSICKPLKSLGIHSVS 250
Query: 289 LHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL---DSLSKG 345
LHPGA+I+HQI+GL+SCEPEFL+STPERLL+L++LKAID+SGVS+LV+D L L+
Sbjct: 251 LHPGASIEHQISGLKSCEPEFLISTPERLLELIALKAIDISGVSMLVIDGLKCFTDLNVS 310
Query: 346 DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGS--INRLSLNQSVASQSACIIQS 403
D L IR +I P +F+D + V A+ L+G I RL N SV S+ A I Q
Sbjct: 311 DKLCSIRDAILSNPQITIFSD-PSDRRVAALATKLVGGKKITRLCTNDSVTSRGAFITQK 369
Query: 404 VNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTG 463
+++C S ++K K ++L+ DH + KVL + D + Q+L S+LK + +++
Sbjct: 370 IHICPSKDQKAPKVKEILEQILNDHAR-KTAKVLLVTASDHEAQHLSSSLKLQNCTVTND 428
Query: 464 SN 465
S+
Sbjct: 429 SH 430
>gi|357157722|ref|XP_003577892.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 5-like [Brachypodium
distachyon]
Length = 521
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 137/291 (47%), Positives = 193/291 (66%), Gaps = 8/291 (2%)
Query: 170 EKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAK--DILETSGSS 227
EK D PSKFL++CLNAI +A GV+ D SWG+EFWKC S++ D+L
Sbjct: 125 EKYDRPSKFLVVCLNAIRDAAAA-GVDGDLVHEDASWGLEFWKCCSASPPSDVLHAGEGC 183
Query: 228 STIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTV 287
+ AW+++ A D +ARKEK G PFLL++V SQE+A +VR +CKPLK+ GIH+V
Sbjct: 184 APPGLAAWLISAACDIVARKEKLGVVVPCPFLLYIVPSQERALEVRLICKPLKSLGIHSV 243
Query: 288 SLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS---LSK 344
SLHPGA+++HQI+GL+SCEPEFL+STPERLL+LVS KAID+S VS++ +D L + L+
Sbjct: 244 SLHPGASVEHQISGLKSCEPEFLISTPERLLELVSRKAIDISNVSMMAIDGLKTFMDLNI 303
Query: 345 GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQ-SVASQSACIIQS 403
D L I+ +IS +FND ++VP V++LL G I +LS+N S+ +SA I Q
Sbjct: 304 SDKLYSIKGAISSDAQITIFNDTCDQSAVPVVKSLLRGRITKLSVNDCSLNHRSAFIAQH 363
Query: 404 VNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLK 454
++ C S+E+K + ++L+H D S+ KVL + D + QNL S+LK
Sbjct: 364 IHFCPSEEKKATQVKEILEHVL-DSSASKTAKVLLVAADDHEAQNLASSLK 413
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 59/75 (78%), Gaps = 2/75 (2%)
Query: 1 MTKGDDAVMRRRNKAKIKKLNNKNTSSNVSARVAAVIAAKKRRKSGKRRQCQGMCFSLPT 60
M KGDDA+ R+R K + K++ + + VS RVAA+IA+K+RRK+GKRR C+GMCFSLP+
Sbjct: 1 MAKGDDALARKRGKVRRKRMRSSENA--VSTRVAAIIASKRRRKTGKRRGCEGMCFSLPS 58
Query: 61 LDDPFNDRYDKRETE 75
+DPFNDR+ K++ +
Sbjct: 59 PEDPFNDRHGKKKKD 73
>gi|414882117|tpg|DAA59248.1| TPA: hypothetical protein ZEAMMB73_455537 [Zea mays]
Length = 265
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 179/304 (58%), Gaps = 46/304 (15%)
Query: 1 MTKGDDAVMRRRNKAKIKKLNNKNTSSNVSARVAAVIAAKKRRKSGKRRQCQGMCFSLPT 60
M KGDDA+ R + ++++ +++ + VSARVAA+IA+K RRKSGKRR C+GMCFSLPT
Sbjct: 1 MAKGDDALAR--KRNRVRRKRLRSSENAVSARVAAIIASKHRRKSGKRRACEGMCFSLPT 58
Query: 61 LDDPFNDRYDKRETETKATKKRNSLQLDKNKNAFVKGKSAVSKKETKRDNNEKPGHLEQT 120
DDPFN+R+ R+ + ++ + K K A +KK+ + +
Sbjct: 59 PDDPFNERHG-RKHKLDDEPADDTAADAAEDSGNPKKKGANTKKQQPVAK-----YGAEA 112
Query: 121 KEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHLNGKSCANGHHGQACEKLDCPSKFLI 180
K KA+ + + G E G+ +R PSKFL+
Sbjct: 113 KSKAVRERET---------GAEVVRGDFDR------------------------PSKFLV 139
Query: 181 LCLNAIENAMRHDGVEQDNPLF-VNSWGIEFWKCYSS--AKDILETSGSSSTIVQIAWIV 237
+CLNAI +A+ + E + WG+E W+C S+ D+L+ SG+ +T+ Q AW+V
Sbjct: 140 VCLNAIRDAVAPE--EGGGSIHGAGDWGVELWRCCSAQAPSDVLDASGACATVAQTAWLV 197
Query: 238 ATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDH 297
+TA D +ARKE+ G + PFLL+LVSSQ+KAA+VRS+CKPLK GIH+VSLHPGA+I+H
Sbjct: 198 STACDIVARKERHGMVVSCPFLLYLVSSQDKAAQVRSICKPLKPLGIHSVSLHPGASIEH 257
Query: 298 QITG 301
QI+G
Sbjct: 258 QISG 261
>gi|414587749|tpg|DAA38320.1| TPA: hypothetical protein ZEAMMB73_360846 [Zea mays]
Length = 376
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 84/148 (56%), Positives = 114/148 (77%), Gaps = 5/148 (3%)
Query: 176 SKFLILCLNAIENAMRHDGVEQDNPLF-VNSWGIEFWKCYSS--AKDILETSGSSSTIVQ 232
SKFL++CLNAI +A+ + E N + WG+EFW+C S+ + D+L+ SG+ +T+ Q
Sbjct: 229 SKFLVVCLNAIRDAVAPE--EGGNSIHGTGDWGVEFWRCCSAQASSDVLDASGACATVTQ 286
Query: 233 IAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPG 292
AW+V+TA D IARKE+ G + PFLL+LVSSQ+KAA+VRS+CKPLK GIH+VSLHPG
Sbjct: 287 TAWLVSTACDIIARKERHGMVVSCPFLLYLVSSQDKAAQVRSICKPLKPLGIHSVSLHPG 346
Query: 293 AAIDHQITGLRSCEPEFLVSTPERLLKL 320
A+I+HQI+GL +CEPEFL++TPE L L
Sbjct: 347 ASIEHQISGLETCEPEFLIATPESFLIL 374
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/107 (69%), Positives = 93/107 (86%)
Query: 224 SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFG 283
S S+T+ Q AW+V+TA D IARKE+ G + PFLL+LVSSQ+KAA+VRS+CKPLK G
Sbjct: 61 SWWSATVTQTAWLVSTACDIIARKERHGMVVSCPFLLYLVSSQDKAAQVRSICKPLKPLG 120
Query: 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSG 330
IH+VSLHPGA+I+HQI+GL++CEPEFL++TPERLL LVSLKAID+SG
Sbjct: 121 IHSVSLHPGASIEHQISGLKTCEPEFLIATPERLLNLVSLKAIDISG 167
>gi|147820970|emb|CAN74595.1| hypothetical protein VITISV_003477 [Vitis vinifera]
Length = 823
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 87/134 (64%), Positives = 110/134 (82%), Gaps = 3/134 (2%)
Query: 167 QACEKLDCPSKFLILCLNAIENAMRHDGV---EQDNPLFVNSWGIEFWKCYSSAKDILET 223
Q+CE DCPSKFLILCL +I++A++ D + ++D PLFVN WG+EFWKCYSS D+LET
Sbjct: 482 QSCENSDCPSKFLILCLKSIQSALQQDVIFNFKEDKPLFVNEWGVEFWKCYSSGIDVLET 541
Query: 224 SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFG 283
SG+ ST+ +IAW+++TAAD+IARKEKEG TG FLLFLV SQE+AAK R+VCKPLKA
Sbjct: 542 SGACSTLERIAWMISTAADTIARKEKEGIFLTGLFLLFLVPSQEEAAKARAVCKPLKALR 601
Query: 284 IHTVSLHPGAAIDH 297
IHT+SLH GA++D
Sbjct: 602 IHTMSLHHGASLDQ 615
>gi|168006735|ref|XP_001756064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692574|gb|EDQ78930.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 557
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 140/443 (31%), Positives = 215/443 (48%), Gaps = 51/443 (11%)
Query: 1 MTKGDDAVMRRRNKAKIKKLNNKNTSSNVSARVAAVIAAKKRRKSGKRRQCQGMCFSLPT 60
M KGDDA+ +++NKA K+ N+ +N + + V + K+RRK+G RR C+ MC+SLPT
Sbjct: 1 MAKGDDALAKKKNKAIRKR--NRRAGANTTEAIEGVQSHKRRRKAGTRRVCESMCYSLPT 58
Query: 61 LDDPFNDRYDKRETETKATKKRNSLQLDKNKNAFVKGKSAVSKKETKRDNNEKPGHLEQT 120
DDPF DR R KN ++F SA K E +R + E+ E++
Sbjct: 59 PDDPFLDRKIHR----------------KNHDSFQTNGSANWKVEERRSDTER--KHEKS 100
Query: 121 KEKAINLKNSQDKSLLFIDGVEKRTGNVERAEVHLNGKSCANGHH---GQACEKLDCPSK 177
E ++ K EK N R E +N + A C++ K
Sbjct: 101 TENVMSRSTDVVKP-------EKVQANGSRKE-DINKFTSAPLKKVVWDPNCDRKSSEPK 152
Query: 178 FLI---LCL--NAIENAM------RHDGVEQDNPLFVNSWGIE--FWKCYSSAKDILETS 224
I LC NA + A+ R+ P + E +W+ + D+L T
Sbjct: 153 AGISDALCTANNAFQLAVSALFEDRYSEGSSSKPRAAAATNFEQQWWQACAQGVDVLGTG 212
Query: 225 GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK-AFG 283
+ I A+ V A +K+ G + GPF L LV S+++A VR +CK LK
Sbjct: 213 CGTPCIK--AYTVGAAPHVAVQKKVSGLA-QGPFALILVKSKDQAQSVRQICKLLKKVLN 269
Query: 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL- 342
IHTVSLH +I+ Q+ GL P +V+TP+RL +L++L +S VS +VVD LD L
Sbjct: 270 IHTVSLHSEKSIELQVNGLAMQTPGIVVATPDRLCQLLTLSVFSLSSVSYVVVDSLDDLI 329
Query: 343 SKG--DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACI 400
++G + L I+Q + V + + V A N L + R L+++V + SACI
Sbjct: 330 NEGYREQLDNIKQQLQKGVQVGVISKTFSADVVSAAGNWLQHPVARAVLDKNVPASSACI 389
Query: 401 IQSVNVCASDEEKILKGIQVLDH 423
+QSV+V ++E K+ K ++L+
Sbjct: 390 LQSVSVTTTEESKLTKFNKILEQ 412
>gi|147782354|emb|CAN61306.1| hypothetical protein VITISV_035680 [Vitis vinifera]
Length = 244
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/111 (61%), Positives = 84/111 (75%), Gaps = 3/111 (2%)
Query: 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSL---IRQS 354
I L+S EPEFLV+TPERLL+L+SLKAID+SGVSLLVVD LD+L KG L + IRQS
Sbjct: 133 HIHRLKSREPEFLVATPERLLELISLKAIDISGVSLLVVDGLDTLCKGGYLDMIKSIRQS 192
Query: 355 ISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVN 405
IS PH VVF++ + TSVP V++LL GS RL L S+ +QSACI QS++
Sbjct: 193 ISRNPHAVVFSERSSCTSVPGVEDLLRGSYCRLPLKGSINNQSACIAQSIH 243
>gi|296090407|emb|CBI40226.3| unnamed protein product [Vitis vinifera]
Length = 130
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/107 (62%), Positives = 83/107 (77%), Gaps = 3/107 (2%)
Query: 302 LRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSL---IRQSISGK 358
L+S EPEFLV+TPERLL+L+SLKAID+SGVSLLVVD LD+L KG L + IRQSIS
Sbjct: 23 LKSREPEFLVATPERLLELISLKAIDISGVSLLVVDGLDTLCKGGYLDMIKSIRQSISRN 82
Query: 359 PHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVN 405
PH VVF++ + TSVP V++LL GS RL L S+ +QSACI QS++
Sbjct: 83 PHAVVFSERSSCTSVPGVEDLLRGSYCRLPLKGSINNQSACIAQSIH 129
>gi|414589495|tpg|DAA40066.1| TPA: hypothetical protein ZEAMMB73_834377 [Zea mays]
Length = 277
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 76/129 (58%), Gaps = 29/129 (22%)
Query: 204 NSWGIEFWKCYSS--AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261
++WG+E W+C S+ + D+L + +T++Q W+V+ D+++RKEK + PFLL+
Sbjct: 22 DNWGMELWRCCSAQASSDVLNAIDTCATVLQTVWLVSKTCDNVSRKEKHEMIVSCPFLLY 81
Query: 262 LVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLV 321
LVSSQ+KA QI GL++CE EFL++T +RLL LV
Sbjct: 82 LVSSQDKAV---------------------------QIFGLKTCEREFLIATTKRLLNLV 114
Query: 322 SLKAIDVSG 330
SLKAID+SG
Sbjct: 115 SLKAIDISG 123
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Query: 204 NSWGIEFWKCYSS--AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261
++WG+E W+C S+ + D+L + +T++Q W+V+ D+++RKEK + PFLL+
Sbjct: 193 DNWGMELWRCCSAQASSDVLNAIDTCATVLQTVWLVSKTCDNVSRKEKHEMIVSCPFLLY 252
Query: 262 LVSSQEKAAKVRSVCKPLKAF 282
L+SSQ+KA +VRS+ KPLK
Sbjct: 253 LISSQDKAVQVRSISKPLKPL 273
>gi|281209475|gb|EFA83643.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 665
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 9/160 (5%)
Query: 211 WKCYSSAKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268
W C + D+L S GS T + ++ D I + E P +L LV ++E
Sbjct: 253 WPCVLTGHDVLGISLPGSGKTAGFLLPMIPHCQDRI---KNETIIPNSPSILILVPTREL 309
Query: 269 AAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
A ++ S+ L K FGIH++ ++ G A + QI L+ P L++TP RL+ L+ + ++
Sbjct: 310 ARQIYSISSKLRKHFGIHSLPIYGGVAKEPQIQSLQGGIPHILIATPGRLVDLIDMGVLN 369
Query: 328 VSGVSLLVVDRLDS-LSKG--DTLSLIRQSISGKPHTVVF 364
++GV++LVVD D LS G D L I+ I T+ F
Sbjct: 370 LNGVTMLVVDEADKMLSMGLIDQLEQIKSQIRPDVQTLFF 409
>gi|330795215|ref|XP_003285670.1| hypothetical protein DICPUDRAFT_149527 [Dictyostelium purpureum]
gi|325084396|gb|EGC37825.1| hypothetical protein DICPUDRAFT_149527 [Dictyostelium purpureum]
Length = 757
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 90/175 (51%), Gaps = 15/175 (8%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP +L +V ++E A +V S CKPL++ F IH+V+++ G Q L E +++TP
Sbjct: 364 GPLVLIIVPTRELAQQVESSCKPLRSKFNIHSVAIYGGVEAQQQKEILSQEHNEIVIATP 423
Query: 315 ERLLKLVSLKAIDV----SGVSLLV---VDRLDSLSKGDTLSLIRQSISGKPHTVVFNDC 367
RL+ L+ ++ D+ GV +LV DR+ L GD L I + I T++F+
Sbjct: 424 GRLVDLIQ-RSEDIVGLLGGVGMLVFDEADRMLQLGFGDQLQKISEQIRPDRQTLMFSAT 482
Query: 368 LTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLD 422
+ A + L + ++ + S A+Q + I S NV ++++K I LD
Sbjct: 483 FPHAMQEAAKKWLNNPL-KIRVKSSSANQESSAIVSKNV-----KQVVKPIVDLD 531
>gi|281211187|gb|EFA85353.1| hypothetical protein PPL_02356 [Polysphondylium pallidum PN500]
Length = 771
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 97/198 (48%), Gaps = 28/198 (14%)
Query: 190 MRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTI----VQIAWIVAT--AA 241
++H + + P+ + SW S D+L +GS T+ I I+A AA
Sbjct: 283 IKHKSIREPTPVQMQSWS-----AVLSGNDVLTIAQTGSGKTLGYLLPTIPHIMAQMRAA 337
Query: 242 DSIARKEKEGF------SFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAA 294
+ + +G S GP +L +V ++E A +V SVCKPL+ FGIH+++++ G
Sbjct: 338 KNQQKTAPDGTPIESLSSVKGPIVLVIVPTRELAQQVESVCKPLRTKFGIHSLAVYGGIK 397
Query: 295 IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSG----VSLLVVDRLDSLSK---GDT 347
Q L E +++TP RL+ L+ ++ V+G V++L+ D D + + GD
Sbjct: 398 AHEQKEILSEEHNEIVIATPGRLVDLIE-RSHQVAGLLSRVTMLIFDEADRMLQMGFGDQ 456
Query: 348 LSLIRQSISGKPHTVVFN 365
L I + I T++F+
Sbjct: 457 LQKISEQIRPDRQTLMFS 474
>gi|66801681|ref|XP_629765.1| hypothetical protein DDB_G0292010 [Dictyostelium discoideum AX4]
gi|60463168|gb|EAL61361.1| hypothetical protein DDB_G0292010 [Dictyostelium discoideum AX4]
Length = 777
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 8/158 (5%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP +L +V ++E A +V S CKPL++ F IH+++++ G + Q L E +++TP
Sbjct: 386 GPMVLIIVPTRELAKQVESSCKPLRSKFNIHSIAIYGGVDANEQKDILGQEHNEIIIATP 445
Query: 315 ERLLKLV--SLKAID-VSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCL 368
RL+ L+ S + + + GV +L++ DR+ L GD L I + I T++F+
Sbjct: 446 GRLVDLIQRSKEVVGLLGGVGMLILDEADRMLQLGFGDQLQKISEQIRPDRQTLMFSATF 505
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNV 406
T A + L + ++ + S +Q + I S NV
Sbjct: 506 PQTMQDAAKKWLTNPL-KIRVKSSSTNQGSTSIISKNV 542
>gi|66800715|ref|XP_629283.1| hypothetical protein DDB_G0293036 [Dictyostelium discoideum AX4]
gi|74896762|sp|Q54CD6.1|DDX5_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx5; AltName:
Full=DEAD box protein 5
gi|60462668|gb|EAL60870.1| hypothetical protein DDB_G0293036 [Dictyostelium discoideum AX4]
Length = 697
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 13/167 (7%)
Query: 211 WKCYSSAKDILETS--GSSSTIVQIAWIVATAADSIARK-------EKEGFSFTGPFLLF 261
W + DI+ TS GS T+ +A ++ + R EK +TG +L
Sbjct: 237 WPAILTGHDIIGTSLPGSGKTLGYLAPMIPHCLARVDRGGKNKITGEKAPKQYTGILVLV 296
Query: 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKL 320
LV ++E +V S + + FGI T ++ G + + QI L +P+ L+STP RL+++
Sbjct: 297 LVPTRELGLQVHSNTLIITQLFGIKTSVIYGGISKNLQIEQLEKEKPQILISTPGRLIEM 356
Query: 321 VSLKAIDVSGVSLLVVDRLDS-LSKG--DTLSLIRQSISGKPHTVVF 364
+ +D+S V++LV+D D LSKG L IR I ++F
Sbjct: 357 IENGHVDLSSVTMLVLDEADKMLSKGLIPQLKQIRGQIRPDSQNILF 403
>gi|147818849|emb|CAN62968.1| hypothetical protein VITISV_032272 [Vitis vinifera]
Length = 62
Score = 65.5 bits (158), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/52 (59%), Positives = 42/52 (80%)
Query: 294 AIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKG 345
A+ + L+SCEPEFLV+TPERLL+L+SLKAID+SGVSLL R+ + ++G
Sbjct: 11 AVSMEAPCLKSCEPEFLVATPERLLELISLKAIDISGVSLLDNPRMVAYTQG 62
>gi|328873292|gb|EGG21659.1| hypothetical protein DFA_01545 [Dictyostelium fasciculatum]
Length = 1285
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 21/178 (11%)
Query: 211 WKCYSSAKDILET--SGSSSTIVQIAWIVATAADSIAR-KEKEGFS------FTGPFLLF 261
W + D+L +GS T+ +++ +A+ K++ G GP +L
Sbjct: 784 WSAVMTGNDVLTIAQTGSGKTL---GYLLPAIPHVLAQMKQRSGLQVKGMPPIRGPIVLI 840
Query: 262 LVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKL 320
+V ++E A +V +VCKPL++ GIH+++++ G Q L E +++TP RL+ L
Sbjct: 841 IVPTRELAQQVDAVCKPLRSKLGIHSLAIYGGVKSYEQKEILSQEHNEIVIATPGRLVDL 900
Query: 321 VSLKAIDVSG----VSLLV---VDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYT 371
+ ++ +V G VSLL+ DR+ L GD L I + I T++F+ T
Sbjct: 901 IQ-RSEEVVGLLSRVSLLIFDEADRMLQLGFGDQLQKISEQIRPDRQTLMFSATFAKT 957
>gi|224002607|ref|XP_002290975.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972751|gb|EED91082.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 681
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 121/270 (44%), Gaps = 25/270 (9%)
Query: 199 NPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTG 256
NP V + + C + +D++ +GS T+ + ++ D E TG
Sbjct: 82 NPFPVQA---QCLPCIMAGRDVIGIAKTGSGKTLAFVLPMLRHILDQPPLAPGE----TG 134
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A ++ VCK K G+ + +++ GA + QI L+ L +TP
Sbjct: 135 PIGLILAPARELAYQIHVVCKGFTKHLGLKSTAVYGGAGVAEQIGDLKRGT-HILCATPG 193
Query: 316 RLLKLVSL---KAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGKPHTVVFNDCLT 369
RL+ ++++ K I + VS++ +D D + +S I ++ TV+F+
Sbjct: 194 RLIDILTMQSGKLISLQRVSMVCLDEADRAFDMGFESQISAILSAVRPDRQTVLFSATFP 253
Query: 370 YTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHF 429
+ L + + +SVAS S + Q V +E+K L+ +Q+L GDH
Sbjct: 254 KAVEQLAKKSLRAPLEIIVGGRSVASDS--VDQYAEVV-EEEDKFLRLLQIL----GDHA 306
Query: 430 HSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459
+ KV+ VG+ + +L L GYS
Sbjct: 307 DDQK-KVIVFVGRQEQADSLFEQLTRCGYS 335
>gi|335998172|ref|ZP_08564084.1| ATP-dependent RNA helicase [Lactobacillus ruminis SPM0211]
gi|335348686|gb|EGM50187.1| ATP-dependent RNA helicase [Lactobacillus ruminis SPM0211]
Length = 419
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 11/150 (7%)
Query: 209 EFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268
E + + KD+L S + S T A ++ EK GP LL + SQE
Sbjct: 23 EVYPLLAQGKDVLGLSPTGSG--------KTLAYALPLLEK-VLKGDGPQLLIIAPSQEL 73
Query: 269 AAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
AA++ V +P K I T ++ GA + QI LR PE +V TP RLL L K +
Sbjct: 74 AAQLADVIRPWGKLLEIKTAAIIGGANVKRQIEKLRKDRPEVIVGTPGRLLNLADEKRLK 133
Query: 328 VSGVSLLVVDRLDS-LSKGDTLSLIRQSIS 356
+ + +V+D D L++ +TL+ R+ +S
Sbjct: 134 LHNLEAIVIDEADEMLAQEETLADCRKLVS 163
>gi|323340126|ref|ZP_08080390.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
ruminis ATCC 25644]
gi|417972703|ref|ZP_12613593.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 25644]
gi|323092317|gb|EFZ34925.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
ruminis ATCC 25644]
gi|346330914|gb|EGX99143.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 25644]
Length = 419
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 11/150 (7%)
Query: 209 EFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268
E + + KD+L S + S T A ++ EK GP LL + SQE
Sbjct: 23 EVYPLLAQGKDVLGLSPTGSG--------KTLAYALPLLEK-VLKGDGPQLLIIAPSQEL 73
Query: 269 AAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
AA++ V +P K I T ++ GA + QI LR PE +V TP RLL L K +
Sbjct: 74 AAQLADVIRPWGKLLEIKTAAIIGGANVKRQIEKLRKDRPEVIVGTPGRLLNLADEKRLK 133
Query: 328 VSGVSLLVVDRLDS-LSKGDTLSLIRQSIS 356
+ + +V+D D L++ +TL+ R+ +S
Sbjct: 134 LHNLEAIVIDEADEMLAQEETLADCRKLVS 163
>gi|330812846|ref|XP_003291328.1| hypothetical protein DICPUDRAFT_38798 [Dictyostelium purpureum]
gi|325078508|gb|EGC32156.1| hypothetical protein DICPUDRAFT_38798 [Dictyostelium purpureum]
Length = 692
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 78/150 (52%), Gaps = 15/150 (10%)
Query: 211 WKCYSSAKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPF---------- 258
W D++ TS GS T+ +A ++ + R +++ F P+
Sbjct: 226 WPAILCGNDMIGTSLPGSGKTLGYLAPMIPHCLARMNRSQQQKQQFKDPYQEKKQKNSDL 285
Query: 259 -LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
+L LV ++E +V + K + + FGI ++++ G QI L+ +P+ L+STP R
Sbjct: 286 LVLVLVPTRELGLQVFNNFKLINQLFGIKALAIYGGIPKPLQIEQLQREKPQILISTPGR 345
Query: 317 LLKLVSLKAIDVSGVSLLVVDRLDS-LSKG 345
L++++ L +++S +++LV+D D LSKG
Sbjct: 346 LIEMIDLGHVNLSTITMLVLDEADKMLSKG 375
>gi|392987353|ref|YP_006485946.1| DEAD/DEAH box helicase [Enterococcus hirae ATCC 9790]
gi|392334773|gb|AFM69055.1| DEAD-box ATP dependent DNA helicase [Enterococcus hirae ATCC 9790]
Length = 423
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 95/217 (43%), Gaps = 18/217 (8%)
Query: 249 KEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEP 307
KEG G LL LVSSQE A +V V + K + SL GA + QI GL+ P
Sbjct: 65 KEG----GSTLLILVSSQELAIQVAEVAREWSKGLALKVQSLVGGANVKRQIEGLKK-RP 119
Query: 308 EFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFN 365
E LV TP R+L+L+ K + + +V D D L SL+ Q + P + +VF
Sbjct: 120 EVLVGTPGRVLELMKTKKLKAHQLQTIVFDEADQLFDEGNRSLVEQILRQAPVDYQLVFF 179
Query: 366 DCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAY 425
S+ ++ + SI + + + S+ + + +E+ L+ + AY
Sbjct: 180 SATADRSISKIEEITNASIPVVDVTKDDDSRKGQQHYYLRIPPRKKEEYLRRL-----AY 234
Query: 426 GDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIST 462
FH L + ++ + L+ +G S+ +
Sbjct: 235 VTDFHG-----LVFFNQLNELGTMEEKLQFRGVSVGS 266
>gi|347525065|ref|YP_004831813.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 27782]
gi|345284024|gb|AEN77877.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 27782]
Length = 419
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 11/150 (7%)
Query: 209 EFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268
E + + KD+L S + S T A ++ EK GP LL + SQE
Sbjct: 23 EVYPLLAQGKDVLGLSPTGSG--------KTLAYALPLLEKV-LKGDGPQLLIIAPSQEL 73
Query: 269 AAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
AA++ V +P K + T ++ GA + QI LR PE +V TP RLL L K +
Sbjct: 74 AAQLADVIRPWGKLLELKTAAIIGGANVKRQIEKLRKDRPEVIVGTPGRLLNLADEKRLK 133
Query: 328 VSGVSLLVVDRLDS-LSKGDTLSLIRQSIS 356
+ + +V+D D L++ +TL+ R+ +S
Sbjct: 134 LHNLEAIVIDEADEMLAQEETLADCRKLVS 163
>gi|378755949|gb|EHY65974.1| ATP-dependent RNA helicase DBP2 [Nematocida sp. 1 ERTm2]
Length = 517
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 19/173 (10%)
Query: 176 SKFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET----SGSSSTI 230
+KF A + A + G + P+ W + S +D++ SG + +
Sbjct: 93 TKFEYFGFPASVMAAFKSAGYSEPTPIQAQGWPLAL-----SGRDMVGVANTGSGKTLSF 147
Query: 231 VQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS-VCKPLKAFGIHTVSL 289
+ A I A A + + + GP +L L ++E +++ CK K FG+ TV++
Sbjct: 148 ILPALIHAKAQKPLRQGD-------GPIVLVLAPTRELVSQIEEEACKYAKYFGLRTVAV 200
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
GA Q +R E L++TP RL+ L KA+ +S VS LV+D D +
Sbjct: 201 FGGAPAGPQKGAIRRGA-EILIATPGRLIDLYEQKAVFMSRVSFLVLDEADRM 252
>gi|418068830|ref|ZP_12706111.1| superfamily II DNA/RNA helicase [Pediococcus acidilactici MA18/5M]
gi|357538488|gb|EHJ22509.1| superfamily II DNA/RNA helicase [Pediococcus acidilactici MA18/5M]
Length = 438
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP LL L SQE A + V + + + T S+ GA + QI L+ +PE +V TP
Sbjct: 61 GPQLLVLAPSQELAIQTTDVFREWASLINLKTTSITGGANVQRQIERLKKKKPEIIVGTP 120
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ 353
R+L L++ + + V + LV+D D + G+ L +RQ
Sbjct: 121 GRVLTLINERRLKVKEIQSLVIDEADEILTGEALEDVRQ 159
>gi|328868773|gb|EGG17151.1| hypothetical protein DFA_08133 [Dictyostelium fasciculatum]
Length = 640
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 105/220 (47%), Gaps = 12/220 (5%)
Query: 211 WKCYSSAKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268
W + +D+L S GS T+ ++ + +A+K+ + F GP +L + ++E
Sbjct: 219 WPSSLAGRDLLGISQTGSGKTL---SFGIPAIMHILAQKQVKYF---GPQVLVVAPTREL 272
Query: 269 AAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
+ ++ P LKA G+ +L+ G QI +R +P+F+V TP R+L L + +
Sbjct: 273 SVQIAQEMAPYLKACGLKFATLYGGDPKIKQIEQMR-YKPQFVVGTPGRILDLANDGYLS 331
Query: 328 VSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KP-HTVVFNDCLTYTSVPAVQNLLLGSIN 385
+ S +V+D D + + IRQ S +P H +++ V A+ N + +
Sbjct: 332 LKRTSYVVLDEADRMLEMGFEDQIRQIFSNVRPDHQLLYWTATWPKKVEALANEFIKTPI 391
Query: 386 RLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAY 425
R+ + S + I Q+ +C ++ +K K I VL+ +
Sbjct: 392 RVQVGNGELSANPNITQNFTICETEADKTSKLIDVLEGIF 431
>gi|427442162|ref|ZP_18925552.1| II DNA/RNA helicase [Pediococcus lolii NGRI 0510Q]
gi|425786807|dbj|GAC46340.1| II DNA/RNA helicase [Pediococcus lolii NGRI 0510Q]
Length = 438
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP LL L SQE A + V + + + T S+ GA + QI L+ +PE +V TP
Sbjct: 61 GPQLLVLAPSQELAIQTTDVFREWASLINLKTTSITGGANVQRQIERLKKKKPEIIVGTP 120
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ 353
R+L L++ + + V + LV+D D + G+ L +RQ
Sbjct: 121 GRVLTLINERRLKVKEIQSLVIDEADEILTGEALEDVRQ 159
>gi|270290583|ref|ZP_06196807.1| II DNA/RNA helicase [Pediococcus acidilactici 7_4]
gi|304386073|ref|ZP_07368413.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
acidilactici DSM 20284]
gi|270280643|gb|EFA26477.1| II DNA/RNA helicase [Pediococcus acidilactici 7_4]
gi|304327800|gb|EFL95026.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
acidilactici DSM 20284]
Length = 438
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP LL L SQE A + V + + + T S+ GA + QI L+ +PE +V TP
Sbjct: 61 GPQLLVLAPSQELAIQTTDVFREWASLINLKTTSITGGANVQRQIERLKKKKPEIIVGTP 120
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ 353
R+L L++ + + V + LV+D D + G+ L +RQ
Sbjct: 121 GRVLTLINERRLKVKEIQSLVIDEADEILTGEALEDVRQ 159
>gi|406601713|emb|CCH46674.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 588
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 104/223 (46%), Gaps = 20/223 (8%)
Query: 216 SAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFS-FTGPFLLFLVSSQEKAAKV 272
S KDI+ +GS T+ A+++ + + FS GP+ L LV ++E A ++
Sbjct: 221 SKKDIIGIAETGSGKTL---AYLIPMLSKLLKLPRLNEFSKADGPYGLILVPTRELAQQI 277
Query: 273 RSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSG 330
K F I +SL G I+ I L++ E +++TP RL+ + + ++
Sbjct: 278 EIEFKKFSKFLPSIDIISLVGGKLIEKNILDLQNKTIEIIIATPGRLIDCLERHILVLNQ 337
Query: 331 VSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLT---------YTSVPAVQN 378
+ LV+D D + + GD ++ I + ++ K ++F +T Y + PA+ N
Sbjct: 338 IQFLVLDESDKMIEMNFGDQVAKITEFMNLKRQNMMFTATMTLEVEKLSKNYVNDPAIIN 397
Query: 379 LLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVL 421
+ + N + +N + + S N+ D +KI K I++L
Sbjct: 398 IGNVNSNEMIINDRIEQKFEFFNNSNNINEIDSKKISKLIKIL 440
>gi|425774421|gb|EKV12728.1| DEAD/DEAH box RNA helicase [Penicillium digitatum PHI26]
gi|425783591|gb|EKV21433.1| DEAD/DEAH box RNA helicase [Penicillium digitatum Pd1]
Length = 1076
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 29/232 (12%)
Query: 253 SFTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLV 311
S GP + L ++E A ++ CKP LKA G+ V + GA I QI L+ E +V
Sbjct: 503 STDGPIGMILSPTRELATQIHKDCKPFLKALGLRAVCAYGGAPIKDQIAELKRGA-EIIV 561
Query: 312 STPERLLKLVSL---KAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFN 365
T RL+ L++ + +++ ++ +V+ DR+ + G + I SI TV+F+
Sbjct: 562 CTAGRLIDLLAANQGRVLNLRRITYVVLDEGDRMFDMGFGPQVVKIMASIRPDRQTVLFS 621
Query: 366 DCLTYTSVPAVQNLLLGSINRLSLNQ----SVASQSAC---IIQSVNVCASDEEKILKGI 418
+ + ++ R +LN+ +V +S I Q V V +D +K + +
Sbjct: 622 ATFPKS---------MEALARKTLNEPVEITVGGKSVVAPEITQIVEVRNND-QKFFRLL 671
Query: 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
++L + Y D + E + L V + +L+ L KGY SI G + I
Sbjct: 672 ELLGNLYEDDAN-EDYRTLIFVDRQEAADDLLKQLMYKGYPCMSIHGGKDQI 722
>gi|429848197|gb|ELA23711.1| pre-mRNA-processing atp-dependent rna helicase prp5 [Colletotrichum
gloeosporioides Nara gc5]
Length = 1165
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 23/225 (10%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA G+ V + GA I QI L+ E +V TP
Sbjct: 640 GPIGLIMTPTRELAVQIHRDCKPFLKAMGLRAVCAYGGAPIRDQIAELKRGA-EIVVCTP 698
Query: 315 ERLLKLVSL---KAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ + ++ VS +V+D D + G +++ + +P T++F+
Sbjct: 699 GRMIDLLAANQGRVTNLRRVSYVVLDEADRMFDMGFEPQVMKIFANMRPDRQTILFS--- 755
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSAC---IIQSVNVCASDEEKILKGIQVLDHAY 425
++P + + L + + + +V +S I Q V V D K + + +L Y
Sbjct: 756 --ATMPRIIDSLTKKVLKSPVEITVGGRSVVAPDITQKVEVIPED-AKFVHLLGLLGELY 812
Query: 426 GDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+ E + L V + K +L+ L KGY SI G + I
Sbjct: 813 DE---DEDARTLIFVERQEKADDLLKELMVKGYPCMSIHGGKDQI 854
>gi|255940232|ref|XP_002560885.1| Pc16g05440 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585508|emb|CAP93214.1| Pc16g05440 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1162
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 15/225 (6%)
Query: 253 SFTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLV 311
S GP + L ++E A ++ CKP L+A G+ V + GA I QI L+ E +V
Sbjct: 590 STDGPISMILAPTRELATQIHKDCKPFLRALGLRAVCAYGGAPIKDQIAELKRGA-EIIV 648
Query: 312 STPERLLKLVSL---KAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFN 365
T RL+ L++ + +++ ++ +V+ DR+ + G + I SI TV+F+
Sbjct: 649 CTAGRLIDLLAANQGRVLNLRRITYVVLDEGDRMFDMGFGPQVVKIMASIRPDRQTVLFS 708
Query: 366 DCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAY 425
+ + L + +SV ++ I Q V V +D +K + +++L + Y
Sbjct: 709 ATFPKSMEALARKTLNDPVEITVGGKSVVARE--ITQIVEVRNND-QKFFRLLELLGNLY 765
Query: 426 GDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
D + E + L V + +L+ L KGY SI G + I
Sbjct: 766 EDDAN-EDYRTLIFVDRQEAADDLLKQLMYKGYPCMSIHGGKDQI 809
>gi|262369669|ref|ZP_06062997.1| superfamily II DNA and RNA helicase [Acinetobacter johnsonii SH046]
gi|381196601|ref|ZP_09903943.1| ATP-dependent RNA helicase RhlB [Acinetobacter lwoffii WJ10621]
gi|262315737|gb|EEY96776.1| superfamily II DNA and RNA helicase [Acinetobacter johnsonii SH046]
Length = 383
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 99/241 (41%), Gaps = 18/241 (7%)
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPG 292
A++V+ D + +E P L L ++E A ++ S K L F +H V+L G
Sbjct: 56 AFLVSVINDLLNNPIQEQRYRGEPRALILAPTRELALQIESDAKELTKFSDLHVVTLLGG 115
Query: 293 AAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR 352
D Q L + +V+TP RL+ V K + + + LV+D D L + ++
Sbjct: 116 VDFDKQKAQLDKKPVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVK 175
Query: 353 QSISGKP-----HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC 407
+ + P T++F+ +Y + Q L + + + + + + V
Sbjct: 176 RIVRFSPRKEQRQTLMFSATFSYDVLNLAQQWLFEPVT-VEIEPEKKTNADVEQRVYMVA 234
Query: 408 ASDEEKILKGIQVLDHAYGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNC 466
SD+ K+L+ I EP+ KV+ + + + L LK GY + S
Sbjct: 235 KSDKYKLLQDI----------LRDEPIEKVMIFANRRDQVRKLYDNLKRDGYKVVMLSGE 284
Query: 467 I 467
I
Sbjct: 285 I 285
>gi|299747858|ref|XP_001837294.2| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Coprinopsis
cinerea okayama7#130]
gi|298407711|gb|EAU84911.2| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Coprinopsis
cinerea okayama7#130]
Length = 1081
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 22/216 (10%)
Query: 254 FTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVS 312
GP L + ++E A ++ CKP LK G+ V + G+ I QI L+ E +V
Sbjct: 492 MEGPMALVMTPTRELAVQIHKDCKPFLKVLGLRAVCAYGGSPIKDQIAELKKGA-EIIVC 550
Query: 313 TPERLLKLV---SLKAIDVSGVSLLVVDRLDSL----SKGDTLSLIRQSISGKPHTVVFN 365
TP R++ L+ S + ++ V+ +V+D D + + + +I +I TV+F+
Sbjct: 551 TPGRMIDLLTANSGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKII-NNIRPDRQTVLFS 609
Query: 366 DCLTYTSVPAVQNLLLGSINRLSLNQSVASQS---ACIIQSVNVCASDEEKILKGIQVLD 422
+ P + L I R L +V +S A I Q V V A D K + +++L
Sbjct: 610 -----ATFPKQMDSLARKILRKPLEITVGGRSVVAAEIEQIVEVRAED-TKFNRLLEILG 663
Query: 423 HAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
Y D + L V + NL+ L KGY
Sbjct: 664 QMYNDDPEC---RTLIFVDRQEAADNLLRDLMRKGY 696
>gi|67521618|ref|XP_658870.1| hypothetical protein AN1266.2 [Aspergillus nidulans FGSC A4]
gi|74657573|sp|Q5BDW4.1|PRP5_EMENI RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
gi|40746703|gb|EAA65859.1| hypothetical protein AN1266.2 [Aspergillus nidulans FGSC A4]
gi|259488412|tpe|CBF87827.1| TPA: Pre-mRNA-processing ATP-dependent RNA helicase prp5 (EC
3.6.1.-) [Source:UniProtKB/Swiss-Prot;Acc:Q5BDW4]
[Aspergillus nidulans FGSC A4]
Length = 1173
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 15/222 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 614 GPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIIVCTP 672
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 673 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSNVRPDRQTVLFSATF 732
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V VC ++E+K ++ +++L + Y
Sbjct: 733 PRNMEALARKTLTKPIEIVVGGRSVVAPE--ITQIVEVC-NEEKKFVRLLELLGNLYSTD 789
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+E + L V + L+ L KGY SI G + I
Sbjct: 790 -ENEDARSLIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQI 830
>gi|384498823|gb|EIE89314.1| hypothetical protein RO3G_14025 [Rhizopus delemar RA 99-880]
Length = 674
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L L ++E A ++ + KA+G+ +++ GA+ Q LRS E LV+TP
Sbjct: 322 GPIGLILAPTRELAIQIYQETRKFAKAYGLKVAAVYGGASKLEQFKDLRSGTVEILVATP 381
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RL+ ++ +KA ++ VS LV+D D +
Sbjct: 382 GRLIDMIKMKATNLRRVSYLVLDEADRM 409
>gi|335357641|ref|ZP_08549511.1| ATP-dependent RNA helicase [Lactobacillus animalis KCTC 3501]
Length = 418
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G LL L SQE AA++ +V +P K ++ +SL GA + QI L+ PE ++ TP
Sbjct: 61 GTQLLILAPSQELAAQLTNVIRPWAKLLELNVLSLIGGANVKRQIEKLKK-RPEVVIGTP 119
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKGDTLSLIRQSISGKPHTVVFNDCLTYTSV 373
RLL L++ K + + + +V+D D L + +TL+ R+ I+ P V + + T
Sbjct: 120 GRLLNLINDKKLKLHKLEAIVIDEADELLGEAETLADCREIIAHAPGEVAVS-FFSATKA 178
Query: 374 PAVQNL 379
P + L
Sbjct: 179 PILAEL 184
>gi|387594137|gb|EIJ89161.1| ATP-dependent RNA helicase DBP2 [Nematocida parisii ERTm3]
gi|387595665|gb|EIJ93288.1| ATP-dependent RNA helicase DBP2 [Nematocida parisii ERTm1]
Length = 511
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 22/172 (12%)
Query: 182 CLN--------AIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIV 231
CLN ++ A + G P+ W + S +D++ +GS T+
Sbjct: 92 CLNFEYFGFPSSVMAAFKSAGYSAPTPIQAQGWPMAL-----SGRDMVGVANTGSGKTL- 145
Query: 232 QIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS-VCKPLKAFGIHTVSLH 290
++I+ + A+K S GP +L L ++E +++ K K FG+ TV+++
Sbjct: 146 --SFILPALIHAKAQKPLR--SGDGPIVLVLAPTRELVSQIEEEASKYAKYFGLRTVAVY 201
Query: 291 PGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
GA Q +R E L++TP RL+ L KA+ +S VS LV+D D +
Sbjct: 202 GGAPAGPQKGAIRRGA-EILIATPGRLIDLFDQKAVFMSRVSFLVLDEADRM 252
>gi|365902598|ref|ZP_09440421.1| superfamily II DNA/RNA helicase [Lactobacillus malefermentans KCTC
3548]
Length = 438
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G +L L SQE A + SV + K++ + ++L GA + Q+ LR PE ++ TP
Sbjct: 61 GSQILILSPSQELAMQTTSVIRDWAKSYDVKVLALTGGANVKRQMEQLRK-RPEIIIGTP 119
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVP 374
R+L LV + + + + +++D D L G+TL +R ++ P V + T P
Sbjct: 120 GRVLNLVEDRKLKLHLMQTIIIDEADDLLAGETLETVRNTVEQAPADVQLG-FFSATETP 178
Query: 375 AVQNL 379
+ L
Sbjct: 179 ILHEL 183
>gi|70995215|ref|XP_752371.1| DEAD/DEAH box RNA helicase [Aspergillus fumigatus Af293]
gi|74672743|sp|Q4WT99.1|PRP5_ASPFU RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
gi|66850006|gb|EAL90333.1| DEAD/DEAH box RNA helicase [Aspergillus fumigatus Af293]
Length = 1211
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 124/282 (43%), Gaps = 25/282 (8%)
Query: 198 DNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFT 255
+NP + S I S +D++ +GS TI A+++ R ++ +
Sbjct: 596 ENPTSIQSQAI---PAIMSGRDVIGVAKTGSGKTI---AFLIPMFRH--IRDQRPLENME 647
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 648 GPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIVVCTP 706
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 707 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATF 766
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V V D K ++ +++L + Y D
Sbjct: 767 PRNMEALARKSLTKPIEIVVGGKSVVAPE--ITQIVEVRNED-TKFVRLLEILGNLYSDD 823
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+ E + L V + L+ L KGY SI G + I
Sbjct: 824 AN-EDARALIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQI 864
>gi|159131126|gb|EDP56239.1| DEAD/DEAH box RNA helicase [Aspergillus fumigatus A1163]
Length = 1211
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 124/282 (43%), Gaps = 25/282 (8%)
Query: 198 DNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFT 255
+NP + S I S +D++ +GS TI A+++ R ++ +
Sbjct: 596 ENPTSIQSQAI---PAIMSGRDVIGVAKTGSGKTI---AFLIPMFRH--IRDQRPLENME 647
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 648 GPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIVVCTP 706
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 707 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATF 766
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V V D K ++ +++L + Y D
Sbjct: 767 PRNMEALARKSLTKPIEIVVGGKSVVAPE--ITQIVEVRNED-TKFVRLLEILGNLYSDD 823
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+ E + L V + L+ L KGY SI G + I
Sbjct: 824 AN-EDARALIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQI 864
>gi|119495979|ref|XP_001264763.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
gi|143359979|sp|A1D373.1|PRP5_NEOFI RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
gi|119412925|gb|EAW22866.1| dead box ATP-dependent rna helicase [Neosartorya fischeri NRRL 181]
Length = 1193
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 124/282 (43%), Gaps = 25/282 (8%)
Query: 198 DNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFT 255
+NP + S I S +D++ +GS TI A+++ R ++ +
Sbjct: 578 ENPTSIQSQAI---PAIMSGRDVIGVAKTGSGKTI---AFLIPMFRH--IRDQRPLENME 629
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 630 GPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIVVCTP 688
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 689 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATF 748
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V V D K ++ +++L + Y D
Sbjct: 749 PRNMEALARKSLTKPIEIVVGGKSVVAPE--ITQIVEVRNED-TKFVRLLEILGNLYSDD 805
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+ E + L V + L+ L KGY SI G + I
Sbjct: 806 AN-EDARALIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQI 846
>gi|281206327|gb|EFA80516.1| exocyst complex subunit 3 [Polysphondylium pallidum PN500]
Length = 1349
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 90/200 (45%), Gaps = 22/200 (11%)
Query: 154 HLNGKSCAN--GHHGQACEKLDCPSKFLILCLN------AIENAMRHDGVEQDNPLFVNS 205
+ + C+N H + D P+ +L +I N ++ V + P + S
Sbjct: 885 QMTPEECSNFLNEHNVTVKSKDSPAPNPVLAFEDMQFAPSITNILK---VNYEKPTPIQS 941
Query: 206 WGIEFWKCYSSAKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV 263
G W S +D++ S GS TI A I + ++ + GP +L +
Sbjct: 942 IG---WPVALSGRDMIGISQTGSGKTIS----FFLPAIQHILSQPRQTGPYLGPQVLIIA 994
Query: 264 SSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVS 322
++E + ++ +P LKA +++V + G + HQI L+ C P+ ++ TP R++ ++
Sbjct: 995 PTRELSVQISHEAQPYLKAARLNSVVMFGGESKSHQIRDLKRC-PQVVIGTPGRIIDIMK 1053
Query: 323 LKAIDVSGVSLLVVDRLDSL 342
+++ VS V+D D +
Sbjct: 1054 EGYLNLKRVSFFVLDEADRM 1073
>gi|259500498|ref|ZP_05743400.1| ATP-dependent RNA helicase [Lactobacillus iners DSM 13335]
gi|315653669|ref|ZP_07906589.1| ATP-dependent RNA helicase [Lactobacillus iners ATCC 55195]
gi|259167882|gb|EEW52377.1| ATP-dependent RNA helicase [Lactobacillus iners DSM 13335]
gi|315489031|gb|EFU78673.1| ATP-dependent RNA helicase [Lactobacillus iners ATCC 55195]
Length = 411
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G + L + E A + ++V P +KA G+ +++L + Q+ L+ +P L++TP
Sbjct: 67 GGLAVILEPTSELAVQTKNVLLPYVKALGLKSIALVGAGNRNRQMEQLKKEKPSILIATP 126
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL---SKGDTLSLIRQSISGKPHTVVF 364
RL +S K I+ + LV+D D + +K D LS + Q++S V+F
Sbjct: 127 GRLFDFISAKKINYQDIKALVIDEADDILEFAKLDLLSALGQNLSSDAQIVLF 179
>gi|346311637|ref|ZP_08853640.1| hypothetical protein HMPREF9452_01509 [Collinsella tanakaei YIT
12063]
gi|345900700|gb|EGX70520.1| hypothetical protein HMPREF9452_01509 [Collinsella tanakaei YIT
12063]
Length = 679
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 88/173 (50%), Gaps = 11/173 (6%)
Query: 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFT---GPFLLFLVSSQEKAAKV 272
+ +DIL + + T A+++ T + K G + + GP +L + ++E A ++
Sbjct: 68 AGRDIL-AAAQTGTGKTAAFLLPTMSRLPRVKRARGRAMSVGCGPRMLIITPTRELAQQI 126
Query: 273 RSVCKPLKAFGIHT-VSLHPGAAIDHQITGL-RSCEPEFLVSTPERLLKLVSLKAIDVSG 330
VCK + A HT V++ G + + Q + L R C+ LV+TP RL+ L+ A +
Sbjct: 127 DDVCKKVAARTRHTAVTVVGGVSYNPQKSALKRGCD--ILVATPGRLVDLIDQGACMLDE 184
Query: 331 VSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCLTYTSVPAVQNLL 380
V +LV+D D + L +R+ +S P T++F+ L +V ++ +L+
Sbjct: 185 VQVLVLDEADRMLDMGFLPAVRKIVSYTPADRQTLLFSATLDEAAVGSITDLV 237
>gi|309807601|ref|ZP_07701551.1| DEAD/DEAH box helicase [Lactobacillus iners LactinV 01V1-a]
gi|308169160|gb|EFO71228.1| DEAD/DEAH box helicase [Lactobacillus iners LactinV 01V1-a]
Length = 387
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G + L + E A + ++V P +KA G+ +++L + Q+ L+ +P L++TP
Sbjct: 61 GGLAVILEPTSELAVQTKNVLLPYVKALGLKSIALVGAGNRNRQMEQLKKEKPSILIATP 120
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL---SKGDTLSLIRQSISGKPHTVVF 364
RL +S K I+ + LV+D D + +K D LS + Q++S V+F
Sbjct: 121 GRLFDFISAKKINYQDIKALVIDEADDILEFAKLDLLSALGQNLSSDAQIVLF 173
>gi|426198422|gb|EKV48348.1| hypothetical protein AGABI2DRAFT_191977 [Agaricus bisporus var.
bisporus H97]
Length = 1063
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 100/216 (46%), Gaps = 22/216 (10%)
Query: 254 FTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVS 312
GP + + ++E A ++ CKP LK G+ V + G+ I QI L+ E +V
Sbjct: 469 MEGPIAVVMTPTRELAVQIHKDCKPFLKVLGLRAVCAYGGSPIKDQIAELKKGA-EIIVC 527
Query: 313 TPERLLKLV---SLKAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFND 366
TP R++ L+ S + ++ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 528 TPGRMIDLLTANSGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIVNNTRPDRQTVLFS- 586
Query: 367 CLTYTSVPAVQNLLLGSINRLSLNQSVASQS---ACIIQSVNVCASDEEKILKGIQVLDH 423
+ P + L I R L +V +S A I Q V V A D K + +++L
Sbjct: 587 ----ATFPKQMDSLARKILRKPLEITVGGRSVVAAEIEQIVEVRAED-TKFNRLLEIL-- 639
Query: 424 AYGDHFHSEP-LKVLYIVGKDSKFQNLVSTLKCKGY 458
G ++ +P + L V + NL+ L KGY
Sbjct: 640 --GQMYNEDPECRTLIFVDRQEAADNLLRELMRKGY 673
>gi|322708721|gb|EFZ00298.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Metarhizium
anisopliae ARSEF 23]
Length = 1245
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 98/212 (46%), Gaps = 18/212 (8%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LK+ G+ V + GA I QI L+ E +V TP
Sbjct: 691 GPVGLIMTPTRELATQIHRDCKPFLKSMGLRAVCAYGGAPIRDQIAELKRGA-EIIVCTP 749
Query: 315 ERLLKLVSL---KAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KP--HTVVFNDCL 368
R++ L++ + ++ V+ +V+D D + + + +G +P T++F+
Sbjct: 750 GRMIDLLAANQGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIFAGMRPDKQTILFS--- 806
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEE--KILKGIQVLDHAYG 426
++P + + L + + + +V +S + + EE K L+ +++L Y
Sbjct: 807 --ATMPRIIDSLTKKVLKSPVEITVGGRSVVAKEIEQIVEVREENTKFLRVLELLGELYD 864
Query: 427 DHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
E + L V + K +L+ L KGY
Sbjct: 865 ---RDEDARALIFVDRQEKADDLLKELMVKGY 893
>gi|312875677|ref|ZP_07735678.1| DEAD/DEAH box helicase [Lactobacillus iners LEAF 2053A-b]
gi|325912693|ref|ZP_08175076.1| DEAD/DEAH box helicase [Lactobacillus iners UPII 60-B]
gi|329920162|ref|ZP_08276993.1| DEAD/DEAH box helicase [Lactobacillus iners SPIN 1401G]
gi|311088931|gb|EFQ47374.1| DEAD/DEAH box helicase [Lactobacillus iners LEAF 2053A-b]
gi|325478114|gb|EGC81243.1| DEAD/DEAH box helicase [Lactobacillus iners UPII 60-B]
gi|328936616|gb|EGG33060.1| DEAD/DEAH box helicase [Lactobacillus iners SPIN 1401G]
Length = 405
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G + L + E A + ++V P +KA G+ +++L + Q+ L+ +P L++TP
Sbjct: 61 GGLAVILEPTSELAVQTKNVLLPYVKALGLKSIALVGAGNRNRQMEQLKKEKPSILIATP 120
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL---SKGDTLSLIRQSISGKPHTVVF 364
RL +S K I+ + LV+D D + +K D LS + Q++S V+F
Sbjct: 121 GRLFDFISAKKINYQDIKALVIDEADDILEFAKLDLLSALGQNLSSDAQIVLF 173
>gi|342887883|gb|EGU87311.1| hypothetical protein FOXB_02187 [Fusarium oxysporum Fo5176]
Length = 1214
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 103/224 (45%), Gaps = 21/224 (9%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LK G+ +V + GA I QI L+ E +V TP
Sbjct: 657 GPIGLIMTPTRELAVQIHRDCKPFLKMMGLRSVCAYGGAPIRDQIAELKRGA-EIIVCTP 715
Query: 315 ERLLKLVSL---KAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ + ++ V+ +V+D D + G +++ + +P T++F+
Sbjct: 716 GRMIDLLAANQGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIFANMRPDRQTILFS--- 772
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACI--IQSVNVCASDEEKILKGIQVLDHAYG 426
++P + + L + + + +V +S I + + K L+ +++L Y
Sbjct: 773 --ATMPRIIDSLTKKVLKNPIEVTVGGRSVVAKEIDQIVEVRDEPSKFLRVLELLGELYD 830
Query: 427 DHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
E + L V + K +L+ L KGY SI G + I
Sbjct: 831 ---RDEDARTLIFVERQEKADDLLKELMIKGYPCMSIHGGKDQI 871
>gi|302191187|ref|ZP_07267441.1| superfamily II DNA/RNA helicase [Lactobacillus iners AB-1]
gi|312872961|ref|ZP_07733021.1| DEAD/DEAH box helicase [Lactobacillus iners LEAF 2062A-h1]
gi|311091483|gb|EFQ49867.1| DEAD/DEAH box helicase [Lactobacillus iners LEAF 2062A-h1]
Length = 405
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G + L + E A + ++V P +KA G+ +++L + Q+ L+ +P L++TP
Sbjct: 61 GGLAVILEPTSELAVQTKNVLLPYVKALGLKSIALVGAGNRNRQMEQLKKEKPSILIATP 120
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL---SKGDTLSLIRQSISGKPHTVVF 364
RL +S K I+ + LV+D D + +K D LS + Q++S V+F
Sbjct: 121 GRLFDFISAKKINYQDIKALVIDEADDILEFAKLDLLSALGQNLSSDAQIVLF 173
>gi|312871823|ref|ZP_07731911.1| DEAD/DEAH box helicase [Lactobacillus iners LEAF 3008A-a]
gi|311092765|gb|EFQ51121.1| DEAD/DEAH box helicase [Lactobacillus iners LEAF 3008A-a]
Length = 405
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G + L + E A + ++V P +KA G+ +++L + Q+ L+ +P L++TP
Sbjct: 61 GGLAVILEPTSELAVQTKNVLLPYVKALGLKSIALVGAGNRNRQMEQLKKEKPSILIATP 120
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL---SKGDTLSLIRQSISGKPHTVVF 364
RL +S K I+ + LV+D D + +K D LS + Q++S V+F
Sbjct: 121 GRLFDFISAKKINYQDIKALVIDEADDILEFAKLDLLSALGQNLSSDAQIVLF 173
>gi|325912059|ref|ZP_08174457.1| DEAD/DEAH box helicase [Lactobacillus iners UPII 143-D]
gi|325476009|gb|EGC79177.1| DEAD/DEAH box helicase [Lactobacillus iners UPII 143-D]
Length = 405
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G + L + E A + ++V P +KA G+ +++L + Q+ L+ +P L++TP
Sbjct: 61 GGLAVILEPTSELAVQTKNVLLPYVKALGLKSIALVGAGNRNRQMEQLKKEKPSILIATP 120
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL---SKGDTLSLIRQSISGKPHTVVF 364
RL +S K I+ + LV+D D + +K D LS + Q++S V+F
Sbjct: 121 GRLFDFISAKKINYQDIKALVIDEADDILEFAKLDLLSALGQNLSSDAQIVLF 173
>gi|309810187|ref|ZP_07704032.1| DEAD/DEAH box helicase [Lactobacillus iners SPIN 2503V10-D]
gi|349611561|ref|ZP_08890796.1| hypothetical protein HMPREF1027_00223 [Lactobacillus sp. 7_1_47FAA]
gi|308169459|gb|EFO71507.1| DEAD/DEAH box helicase [Lactobacillus iners SPIN 2503V10-D]
gi|348608654|gb|EGY58634.1| hypothetical protein HMPREF1027_00223 [Lactobacillus sp. 7_1_47FAA]
Length = 405
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G + L + E A + ++V P +KA G+ +++L + Q+ L+ +P L++TP
Sbjct: 61 GGLAVILEPTSELAVQTKNVLLPYVKALGLKSIALVGAGNRNRQMEQLKKEKPSILIATP 120
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL---SKGDTLSLIRQSISGKPHTVVF 364
RL +S K I+ + LV+D D + +K D LS + Q++S V+F
Sbjct: 121 GRLFDFISAKKINYQDIKALVIDEADDILEFAKLDLLSALGQNLSSDAQIVLF 173
>gi|303324443|ref|XP_003072209.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240111919|gb|EER30064.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 1197
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 126/292 (43%), Gaps = 27/292 (9%)
Query: 188 NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIA 245
+ +R G EQ P + S I S +D++ +GS TI + + D
Sbjct: 572 DVIRKLGYEQ--PTSIQSQAI---PAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRP 626
Query: 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRS 304
+ EG P L + ++E A ++ CKP LKA + V + GA I QI L+
Sbjct: 627 LENMEG-----PVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKR 681
Query: 305 CEPEFLVSTPERLLKLV---SLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KP- 359
E +V TP R++ L+ S + ++ V+ +V+D D + + + IS +P
Sbjct: 682 GA-EIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIISNIRPS 740
Query: 360 -HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGI 418
TV+F+ + L + + +SV +Q I Q V V + K ++ +
Sbjct: 741 RQTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAQE--ITQIVEV-RPENTKFVRLL 797
Query: 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
++L + Y D ++E + L V + L+ L KGY SI G + +
Sbjct: 798 ELLGNLYSDD-NNEDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQV 848
>gi|409079813|gb|EKM80174.1| hypothetical protein AGABI1DRAFT_57683 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 864
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 116/256 (45%), Gaps = 29/256 (11%)
Query: 216 SAKDILET--SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
S +D++ +GS TI + + D ++ EG P + + ++E A ++
Sbjct: 235 SGRDVIGVAKTGSGKTIAFLMPLFRHIKDQRPLEQMEG-----PIAVVMTPTRELAVQIH 289
Query: 274 SVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLV---SLKAIDVS 329
CKP LK G+ V + G+ I QI L+ E +V TP R++ L+ S + ++
Sbjct: 290 KDCKPFLKVLGLRAVCAYGGSPIKDQIAELKKGA-EIIVCTPGRMIDLLTANSGRVTNLK 348
Query: 330 GVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCLTYTSVPAVQNLLLGSINR 386
V+ +V+D D + G +++ + +P TV+F+ + P + L I R
Sbjct: 349 RVTYVVLDEADRMFDMGFEPQVMKIVNNTRPDRQTVLFS-----ATFPKQMDSLARKILR 403
Query: 387 LSLNQSVASQS---ACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEP-LKVLYIVGK 442
L +V +S A I Q V V A D K + +++L G ++ +P + L V +
Sbjct: 404 KPLEITVGGRSVVAAEIEQIVEVRAED-TKFNRLLEIL----GQMYNEDPECRTLIFVDR 458
Query: 443 DSKFQNLVSTLKCKGY 458
NL+ L KGY
Sbjct: 459 QEAADNLLRELMRKGY 474
>gi|119173770|ref|XP_001239279.1| DEAD/DEAH box RNA helicase [Coccidioides immitis RS]
gi|118597491|sp|Q1DHB2.1|PRP5_COCIM RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
gi|392869485|gb|EJB11830.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Coccidioides
immitis RS]
Length = 1197
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 126/292 (43%), Gaps = 27/292 (9%)
Query: 188 NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIA 245
+ +R G EQ P + S I S +D++ +GS TI + + D
Sbjct: 572 DVIRKLGYEQ--PTSIQSQAI---PAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRP 626
Query: 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRS 304
+ EG P L + ++E A ++ CKP LKA + V + GA I QI L+
Sbjct: 627 LENMEG-----PVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKR 681
Query: 305 CEPEFLVSTPERLLKLV---SLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KP- 359
E +V TP R++ L+ S + ++ V+ +V+D D + + + IS +P
Sbjct: 682 GA-EIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIISNIRPS 740
Query: 360 -HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGI 418
TV+F+ + L + + +SV +Q I Q V V + K ++ +
Sbjct: 741 RQTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAQE--ITQIVEV-RPENTKFVRLL 797
Query: 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
++L + Y D ++E + L V + L+ L KGY SI G + +
Sbjct: 798 ELLGNLYSDD-NNEDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQV 848
>gi|320037247|gb|EFW19185.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Coccidioides
posadasii str. Silveira]
Length = 853
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 121/280 (43%), Gaps = 24/280 (8%)
Query: 188 NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQIAWIVATAADSIA 245
+ +R G EQ P + S I S +D++ +GS TI + + D
Sbjct: 228 DVIRKLGYEQ--PTSIQSQAI---PAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRP 282
Query: 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRS 304
+ EG P L + ++E A ++ CKP LKA + V + GA I QI L+
Sbjct: 283 LENMEG-----PVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKR 337
Query: 305 CEPEFLVSTPERLLKLV---SLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KP- 359
E +V TP R++ L+ S + ++ V+ +V+D D + + + IS +P
Sbjct: 338 GA-EIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIISNIRPS 396
Query: 360 -HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGI 418
TV+F+ + L + + +SV +Q I Q V V + K ++ +
Sbjct: 397 RQTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAQE--ITQIVEV-RPENTKFVRLL 453
Query: 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
++L + Y D ++E + L V + L+ L KGY
Sbjct: 454 ELLGNLYSDD-NNEDARALIFVDRQEAADGLLRDLMRKGY 492
>gi|307109457|gb|EFN57695.1| hypothetical protein CHLNCDRAFT_34665 [Chlorella variabilis]
Length = 422
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 9/136 (6%)
Query: 211 WKCYSSAKDI--LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFT-GPFLLFLVSSQE 267
W + +D+ + GS T+ A+++ AA +A K G + GP L L+ ++E
Sbjct: 17 WPVLLAGRDVEAISEPGSGKTL---AYMLP-AAVLLATKGHGGSTLPDGPLALILLPTRE 72
Query: 268 KAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI 326
A +V S C+ L+ + G+ T + G Q+ L S +P LV+TP RLL V A+
Sbjct: 73 LAQQVASACRDLRKYCGLRTCCITGGIDKQQQVEAL-SKQPHLLVATPGRLLDHVQDGAL 131
Query: 327 DVSGVSLLVVDRLDSL 342
++ VS LV+D D +
Sbjct: 132 KLAQVSYLVLDEADKM 147
>gi|421894731|ref|ZP_16325216.1| DEAD/DEAH box helicase family protein [Pediococcus pentosaceus
IE-3]
gi|385272339|emb|CCG90588.1| DEAD/DEAH box helicase family protein [Pediococcus pentosaceus
IE-3]
Length = 438
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G LL L SQE A + V + A G+ S+ GA + QI L+ +PE +V TP
Sbjct: 61 GTQLLVLSPSQELAIQTTDVFREWAALIGLRVTSITGGANVQRQIERLKK-KPEIVVGTP 119
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ 353
R+L L++ + + VS + LV+D D L G+ L RQ
Sbjct: 120 GRVLTLINERRLKVSEIQSLVIDEADELLTGENLEGTRQ 158
>gi|393246045|gb|EJD53554.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 849
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 116/275 (42%), Gaps = 30/275 (10%)
Query: 198 DNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFT 255
D P + S I S +D++ +GS TI + + D ++ S
Sbjct: 205 DRPTPIQSQAI---PAIMSGRDVIGIAKTGSGKTIAFLLPLFRHIKD-----QRPLESME 256
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LK G+ V + G+ I QI ++ E +V TP
Sbjct: 257 GPMALVMTPTRELAVQIHRECKPFLKVLGLRAVCAYGGSPIKDQIAEMKKGT-EIVVCTP 315
Query: 315 ERLLKLV---SLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCL 368
R++ L+ S + ++ V+ LV+ DR+ + + I +I TV+F+
Sbjct: 316 GRMIDLLTANSGRVTNLKRVTYLVLDEADRMFDMGFEPQVMKIVNNIRPDRQTVLFS--- 372
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSAC---IIQSVNVCASDEEKILKGIQVLDHAY 425
+ P + L I + L +V +S I Q V V A D K + +++L Y
Sbjct: 373 --ATFPKQMDSLARKILKKPLEITVGGKSVVAPEIEQIVEVRAED-TKFNRLLEILGQMY 429
Query: 426 GDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460
+ + L V + NL+ L KGY +
Sbjct: 430 NEDAEC---RTLIFVDRQESADNLLRELIRKGYLV 461
>gi|116492385|ref|YP_804120.1| superfamily II DNA/RNA helicase [Pediococcus pentosaceus ATCC
25745]
gi|116102535|gb|ABJ67678.1| Superfamily II DNA and RNA helicase [Pediococcus pentosaceus ATCC
25745]
Length = 438
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G LL L SQE A + V + A G+ S+ GA + QI L+ +PE +V TP
Sbjct: 61 GTQLLVLSPSQELAIQTTDVFREWAALIGLRVTSITGGANVQRQIERLKK-KPEIVVGTP 119
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ 353
R+L L++ + + VS + LV+D D L G+ L RQ
Sbjct: 120 GRVLTLINERRLKVSEIQSLVIDEADELLTGENLEGTRQ 158
>gi|406862855|gb|EKD15904.1| dead box ATP-dependent rna helicase [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1208
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 106/225 (47%), Gaps = 23/225 (10%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA G+ V + GA I QI L+ E +V TP
Sbjct: 649 GPVGLIVTPTRELATQIHKECKPFLKAMGLRAVCAYGGAPIKDQIADLKRGA-EIIVCTP 707
Query: 315 ERLLKLV---SLKAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L+ S + ++ V+ +V+D D + G +++ + +P T++F+
Sbjct: 708 GRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIFANIRPDRQTILFS--- 764
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSAC---IIQSVNVCASDEEKILKGIQVLDHAY 425
++P + + L + + +V +S I Q V V +++K + +++L Y
Sbjct: 765 --ATMPRIMDALAKKTLQSPVEITVGGRSVVAPEITQLVEV-REEKQKFHRLLELLGELY 821
Query: 426 GDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+ E + L V + K +L+ L KGY SI G + I
Sbjct: 822 N---NDEDARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKDQI 863
>gi|156053343|ref|XP_001592598.1| hypothetical protein SS1G_06839 [Sclerotinia sclerotiorum 1980]
gi|160419162|sp|A7ENE0.1|PRP5_SCLS1 RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
gi|154704617|gb|EDO04356.1| hypothetical protein SS1G_06839 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1114
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 17/222 (7%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA G+ V + GA I QI L+ E +V TP
Sbjct: 556 GPIGLIMTPTRELATQIHKECKPFLKAMGLRAVCAYGGAIIKDQIADLKRGA-EIIVCTP 614
Query: 315 ERLLKLV---SLKAIDVSGVSLLVVDRLDSL-SKGDTLSLIR--QSISGKPHTVVFNDCL 368
R+++L+ S + ++ V+ +V+D D + G +++ +I T++F+ +
Sbjct: 615 GRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIRPNRQTILFSATM 674
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L + + +SV + I Q V V ++EK + +++L Y
Sbjct: 675 PRIMDALAKKTLQSPVEIVVGGRSVVAPE--ITQIVEV-REEKEKFHRLLELLGELYN-- 729
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
E + L V + K +L+ L KGY SI G + +
Sbjct: 730 -ADEDARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKDQV 770
>gi|328865698|gb|EGG14084.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 803
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 10/160 (6%)
Query: 210 FWKCYSSAKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQE 267
W + D++ S GS TI +++ R ++ P L ++ ++E
Sbjct: 304 LWPLALTGHDLMVISPPGSGKTI---GFLLPLVPHIQHRMSQKTLVAKSPVALIVLPTRE 360
Query: 268 KAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI 326
A +V PLK FGI V ++ G QI L++ P L++TP RLL + I
Sbjct: 361 LAQQVYRSAIPLKRHFGISAVPIYGGVDPKPQIELLKNT-PHILIATPGRLLDFIQQDII 419
Query: 327 DVSGVSLLVVDRLDS-LSKG--DTLSLIRQSISGKPHTVV 363
+ GV++ V+D D LS G L IR I H ++
Sbjct: 420 SLKGVTVAVLDEADKILSMGFMPQLVQIRSQIRPNAHIIL 459
>gi|403418136|emb|CCM04836.1| predicted protein [Fibroporia radiculosa]
Length = 1002
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 94/215 (43%), Gaps = 20/215 (9%)
Query: 254 FTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVS 312
GP + + ++E A ++ CKP L+ G+ V + G+ I QI ++ E +V
Sbjct: 415 MEGPMAVVMTPTRELAVQIHRECKPFLRVLGLRAVCAYGGSPIKDQIAEMKKGA-EIIVC 473
Query: 313 TPERLLKLV---SLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGKPHTVVFND 366
TP R++ L+ S + ++ V+ LV+D D + + I +I TV+F+
Sbjct: 474 TPGRMIDLLTANSGRVTNLKRVTYLVLDEADRMFDMGFEPQVMKIVNNIRPDRQTVLFS- 532
Query: 367 CLTYTSVPAVQNLLLGSINRLSLNQSVASQS---ACIIQSVNVCASDEEKILKGIQVLDH 423
+ P + L I R L +V +S A I Q V V D K + +++L
Sbjct: 533 ----ATFPKQMDSLARKILRKPLEITVGGRSVVAAEIDQIVEVREED-SKFNRLLEILGQ 587
Query: 424 AYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
Y + S + L V + NL+ L KGY
Sbjct: 588 TYNEDPES---RTLIFVDRQEAADNLLRELMRKGY 619
>gi|309806776|ref|ZP_07700768.1| DEAD/DEAH box helicase [Lactobacillus iners LactinV 03V1-b]
gi|308166840|gb|EFO69027.1| DEAD/DEAH box helicase [Lactobacillus iners LactinV 03V1-b]
Length = 271
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G + L + E A + ++V P +KA G+ +++L + Q+ L+ +P L++TP
Sbjct: 61 GGLAVILEPTSELAVQTKNVLLPYVKALGLKSIALVGAGNRNRQMEQLKKEKPSILIATP 120
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL---SKGDTLSLIRQSISGKPHTVVF 364
RL +S K I+ + LV+D D + +K D LS + Q++S V+F
Sbjct: 121 GRLFDFISAKKINYQDIKALVIDEADDILEFAKLDLLSALGQNLSSDAQIVLF 173
>gi|154315049|ref|XP_001556848.1| hypothetical protein BC1G_04866 [Botryotinia fuckeliana B05.10]
gi|160419161|sp|A6RW79.1|PRP5_BOTFB RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
Length = 1151
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 17/222 (7%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA G+ V + GA I QI L+ E +V TP
Sbjct: 627 GPIGLIMTPTRELATQIHKECKPFLKAMGLRAVCAYGGAIIKDQIADLKRGA-EIIVCTP 685
Query: 315 ERLLKLV---SLKAIDVSGVSLLVVDRLDSL-SKGDTLSLIR--QSISGKPHTVVFNDCL 368
R+++L+ S + ++ V+ +V+D D + G +++ +I T++F+ +
Sbjct: 686 GRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIRPNRQTILFSATM 745
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L + + +SV + I Q V V ++EK + +++L Y
Sbjct: 746 PRIMDALAKKTLQSPVEIVVGGRSVVAPE--ITQIVEV-REEKEKFHRLLELLGELYN-- 800
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
E + L V + K +L+ L KGY SI G + +
Sbjct: 801 -TDEDARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKDQV 841
>gi|322695045|gb|EFY86860.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Metarhizium
acridum CQMa 102]
Length = 1161
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 97/212 (45%), Gaps = 18/212 (8%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LK+ G+ V + GA I QI L+ E +V TP
Sbjct: 607 GPIGLIMTPTRELATQIHRDCKPFLKSMGLRAVCAYGGAPIRDQIAELKRGA-EIIVCTP 665
Query: 315 ERLLKLVSL---KAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KP--HTVVFNDCL 368
R++ L++ + ++ V+ +V+D D + + + +G +P T++F+
Sbjct: 666 GRMIDLLAANQGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIFAGMRPDKQTILFS--- 722
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEE--KILKGIQVLDHAYG 426
++P + + L + + + +V +S + + EE K + +++L Y
Sbjct: 723 --ATMPRIIDSLTKKVLKSPVEITVGGRSVVAKEIEQIVEVREESTKFFRVLELLGELYD 780
Query: 427 DHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
E + L V + K +L+ L KGY
Sbjct: 781 ---RDEDARALIFVDRQEKADDLLKELMVKGY 809
>gi|326803010|ref|YP_004320828.1| DEAD/DEAH box helicase [Aerococcus urinae ACS-120-V-Col10a]
gi|326650403|gb|AEA00586.1| DEAD/DEAH box helicase [Aerococcus urinae ACS-120-V-Col10a]
Length = 437
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 79/148 (53%), Gaps = 8/148 (5%)
Query: 255 TGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVST 313
G L+ L SQE A+++ SV +P ++ + + GA I QI L++ +PE +V++
Sbjct: 72 AGLQLIILAPSQELASQIASVARPWAQSLDLKLQLVIGGANIKRQIDQLKA-KPEIVVAS 130
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCLTY 370
R+ +L+ + + V V+ L+ D +D L K D+L L I P + F +T
Sbjct: 131 LGRINELIEQRKLKVHQVNYLICDEVDDLLKADSLPLFTDLIKRLPKQRQNIAFGATITQ 190
Query: 371 TSVPAVQNLLLGSINR-LSLNQSVASQS 397
S+ V+ LL +I++ + L Q ++SQ+
Sbjct: 191 DSLTKVKELL--AIDQVIDLRQDLSSQA 216
>gi|261194749|ref|XP_002623779.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
dermatitidis SLH14081]
gi|239588317|gb|EEQ70960.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
dermatitidis SLH14081]
Length = 1197
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 123/282 (43%), Gaps = 25/282 (8%)
Query: 198 DNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFT 255
+NP + S I S +D++ +GS TI A+++ + ++ E +
Sbjct: 585 ENPTSIQSQAI---PAIMSGRDVIGVAKTGSGKTI---AFLLPMFRHIMDQRPLE--NME 636
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 637 GPIGLIMTPTRELATQIHKECKPFLKALSLRAVCAYGGAPIKDQIAELKRGA-EIVVCTP 695
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G ++R + +P TV+F+
Sbjct: 696 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRPQRQTVLFSATF 755
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L + + +SV + I Q V V D K ++ + +L Y D
Sbjct: 756 PRNMEALARKTLTKPVEIIVGGRSVVAPE--ITQVVEVRNED-TKFVRLLALLGDLYADD 812
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+E + L V + L+ L KGY SI G + +
Sbjct: 813 -KNEDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQV 853
>gi|269104500|ref|ZP_06157196.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268161140|gb|EEZ39637.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
CIP 102761]
Length = 430
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 15/198 (7%)
Query: 217 AKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS 274
KDIL +S GS T+ + A + R + F+ P +L L ++E A +V +
Sbjct: 20 GKDILASSKTGSGKTLA----FLLPAMQRMYRSKP--FTRRDPRVLILTPTRELAKQVFA 73
Query: 275 VCKPLKAFGIHTVSLHPGAA-IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSL 333
KPL A + +L G + Q+ LR +P F+V+TP RL + ++ + G+ +
Sbjct: 74 QLKPLNAGTPYDAALIVGGENFNDQVKALRK-DPMFVVATPGRLADHLEHRSTYLDGLEM 132
Query: 334 LVV---DRLDSLSKGDTLSLIRQSISG-KPHTVVFNDCLTYTSVPAVQNLLLGSINRLSL 389
L++ DR+ L L I ++ S + T++F+ L + V + + +L + R+S+
Sbjct: 133 LILDEADRMLDLGFEKELRRIHEAASHRRRQTLMFSATLDHPEVVEMAHEMLNAPKRISI 192
Query: 390 NQSVASQSACIIQSVNVC 407
S A + I Q +C
Sbjct: 193 GHS-AEEHKDITQRFILC 209
>gi|239613405|gb|EEQ90392.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
dermatitidis ER-3]
Length = 1197
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 123/282 (43%), Gaps = 25/282 (8%)
Query: 198 DNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFT 255
+NP + S I S +D++ +GS TI A+++ + ++ E +
Sbjct: 585 ENPTSIQSQAI---PAIMSGRDVIGVAKTGSGKTI---AFLLPMFRHIMDQRPLE--NME 636
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 637 GPIGLIMTPTRELATQIHKECKPFLKALSLRAVCAYGGAPIKDQIAELKRGA-EIVVCTP 695
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G ++R + +P TV+F+
Sbjct: 696 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRPQRQTVLFSATF 755
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L + + +SV + I Q V V D K ++ + +L Y D
Sbjct: 756 PRNMEALARKTLTKPVEIIVGGRSVVAPE--ITQVVEVRNED-TKFVRLLALLGDLYADD 812
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+E + L V + L+ L KGY SI G + +
Sbjct: 813 -KNEDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQV 853
>gi|347841781|emb|CCD56353.1| similar to pre-mRNA-processing ATP-dependent RNA helicase PRP5
[Botryotinia fuckeliana]
Length = 1179
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 17/222 (7%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA G+ V + GA I QI L+ E +V TP
Sbjct: 627 GPIGLIMTPTRELATQIHKECKPFLKAMGLRAVCAYGGAIIKDQIADLKRGA-EIIVCTP 685
Query: 315 ERLLKLV---SLKAIDVSGVSLLVVDRLDSL-SKGDTLSLIR--QSISGKPHTVVFNDCL 368
R+++L+ S + ++ V+ +V+D D + G +++ +I T++F+ +
Sbjct: 686 GRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIRPNRQTILFSATM 745
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L + + +SV + I Q V V ++EK + +++L Y
Sbjct: 746 PRIMDALAKKTLQSPVEIVVGGRSVVAPE--ITQIVEV-REEKEKFHRLLELLGELYN-- 800
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
E + L V + K +L+ L KGY SI G + +
Sbjct: 801 -TDEDARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKDQV 841
>gi|167919550|ref|ZP_02506641.1| ATP-dependent RNA helicase [Burkholderia pseudomallei BCC215]
Length = 390
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 12 PGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 67
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 68 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATL 127
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ N LL R+ + Q + S+S I Q+V+ + K ++LDH D
Sbjct: 128 D-GKIGSLTNRLLKDPERIEITQKIESRS-NIAQTVHYVDDRDHK----DRLLDHLLRD 180
>gi|350629482|gb|EHA17855.1| hypothetical protein ASPNIDRAFT_55865 [Aspergillus niger ATCC 1015]
Length = 1198
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 15/222 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 638 GPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGA-EIIVCTP 696
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 697 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATF 756
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V V +D++K ++ +++L + Y
Sbjct: 757 PRNMEALARKTLTKPIEIVVGGKSVVAPE--ITQIVEV-RNDDQKFVRLLELLGNLYSSD 813
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+E + L V + L+ L KGY SI G + I
Sbjct: 814 -ENEDARALIFVDRQEAADALLRELMRKGYPCMSIHGGKDQI 854
>gi|134076811|emb|CAK39865.1| unnamed protein product [Aspergillus niger]
Length = 1191
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 15/222 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 631 GPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGA-EIIVCTP 689
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 690 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATF 749
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V V +D++K ++ +++L + Y
Sbjct: 750 PRNMEALARKTLTKPIEIVVGGKSVVAPE--ITQIVEV-RNDDQKFVRLLELLGNLYSSD 806
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+E + L V + L+ L KGY SI G + I
Sbjct: 807 -ENEDARALIFVDRQEAADALLRELMRKGYPCMSIHGGKDQI 847
>gi|327351907|gb|EGE80764.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
dermatitidis ATCC 18188]
Length = 1205
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 123/282 (43%), Gaps = 25/282 (8%)
Query: 198 DNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFT 255
+NP + S I S +D++ +GS TI A+++ + ++ E +
Sbjct: 593 ENPTSIQSQAI---PAIMSGRDVIGVAKTGSGKTI---AFLLPMFRHIMDQRPLE--NME 644
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 645 GPIGLIMTPTRELATQIHKECKPFLKALSLRAVCAYGGAPIKDQIAELKRGA-EIVVCTP 703
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G ++R + +P TV+F+
Sbjct: 704 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRPQRQTVLFSATF 763
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L + + +SV + I Q V V D K ++ + +L Y D
Sbjct: 764 PRNMEALARKTLTKPVEIIVGGRSVVAPE--ITQVVEVRNED-TKFVRLLALLGDLYADD 820
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+E + L V + L+ L KGY SI G + +
Sbjct: 821 -KNEDARALIFVDRQEAADGLLRDLMHKGYPCMSIHGGKDQV 861
>gi|121701983|ref|XP_001269256.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
gi|143359917|sp|A1CQA9.1|PRP5_ASPCL RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
gi|119397399|gb|EAW07830.1| dead box ATP-dependent rna helicase [Aspergillus clavatus NRRL 1]
Length = 1192
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 15/222 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 630 GPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGA-EIVVCTP 688
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 689 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATF 748
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V V D K ++ +++L + Y D
Sbjct: 749 PRNMEALARKALTKPIEIIVGGRSVVAPE--ITQIVEVRNED-TKFVRLLEILGNLYSDD 805
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+ E + L V + L+ L KGY SI G + I
Sbjct: 806 AN-EDARSLIFVERQEAADALLRELMRKGYPCMSIHGGKDQI 846
>gi|256957102|ref|ZP_05561273.1| helicase [Enterococcus faecalis DS5]
gi|257077898|ref|ZP_05572259.1| helicase [Enterococcus faecalis JH1]
gi|294779263|ref|ZP_06744667.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
gi|307268089|ref|ZP_07549477.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
gi|384518115|ref|YP_005705420.1| DEAD/DEAH box helicase [Enterococcus faecalis 62]
gi|397699402|ref|YP_006537190.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis D32]
gi|422694616|ref|ZP_16752607.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
gi|422711811|ref|ZP_16768738.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
gi|422721033|ref|ZP_16777638.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
gi|422868620|ref|ZP_16915158.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1467]
gi|256947598|gb|EEU64230.1| helicase [Enterococcus faecalis DS5]
gi|256985928|gb|EEU73230.1| helicase [Enterococcus faecalis JH1]
gi|294453630|gb|EFG22028.1| DEAD/DEAH box helicase [Enterococcus faecalis PC1.1]
gi|306515730|gb|EFM84257.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4248]
gi|315031705|gb|EFT43637.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0017]
gi|315034238|gb|EFT46170.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0027]
gi|315147960|gb|EFT91976.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4244]
gi|323480248|gb|ADX79687.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis 62]
gi|329574334|gb|EGG55906.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1467]
gi|397336041|gb|AFO43713.1| DEAD/DEAH box helicase family protein [Enterococcus faecalis D32]
Length = 433
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 259 LLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
LL + SQE A ++ R+ KPL+ + +L GA + QI L+ PE L+ TP
Sbjct: 70 LLIIAPSQELAMQIAEVARTWAKPLQ---LTVQTLIGGANVSRQIDKLKK-RPEVLIGTP 125
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
R+L+L+ K + V +V+D +D L + + LSL +Q ++ P + +VF
Sbjct: 126 GRILELMKNKKVKAQLVKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVF 177
>gi|255534879|ref|YP_003095250.1| Cold-shock DEAD-box protein A [Flavobacteriaceae bacterium 3519-10]
gi|255341075|gb|ACU07188.1| Cold-shock DEAD-box protein A [Flavobacteriaceae bacterium 3519-10]
Length = 571
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 15/119 (12%)
Query: 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-L 342
I T +++ G++I QI LR +P+ +V TP R++ L++ KA+D S + LV+D D L
Sbjct: 101 IKTTAVYGGSSITDQIRSLRD-KPQIIVGTPGRVIDLINRKALDFSEIQWLVLDEADEML 159
Query: 343 SKG--DTLSLIRQSISGKPHTVVFNDCL---------TYTSVPAVQNLLLGSINRLSLN 390
S G D L I + HT +F+ + +Y + P + +GSIN + N
Sbjct: 160 SMGFKDDLETILRETPETKHTYLFSATMNKEVERISKSYLTAP--HRISVGSINEVKKN 216
>gi|384512706|ref|YP_005707799.1| DEAD/DEAH box helicase [Enterococcus faecalis OG1RF]
gi|430361452|ref|ZP_19426672.1| helicase [Enterococcus faecalis OG1X]
gi|430368044|ref|ZP_19428026.1| helicase [Enterococcus faecalis M7]
gi|327534595|gb|AEA93429.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
faecalis OG1RF]
gi|429512473|gb|ELA02079.1| helicase [Enterococcus faecalis OG1X]
gi|429516549|gb|ELA06039.1| helicase [Enterococcus faecalis M7]
Length = 433
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 259 LLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
LL + SQE A ++ R+ KPL+ + +L GA + QI L+ PE L+ TP
Sbjct: 70 LLIIAPSQELAMQIAEVARTWAKPLQ---LTVQTLIGGANVSRQIDKLKK-RPEVLIGTP 125
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
R+L+L+ K + V +V+D +D L + + LSL +Q ++ P + +VF
Sbjct: 126 GRILELMKNKKVKAQLVKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVF 177
>gi|358372963|dbj|GAA89564.1| pre-mRNA-processing ATP-dependent RNA helicase Prp5 [Aspergillus
kawachii IFO 4308]
Length = 1178
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 15/222 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 618 GPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGA-EIIVCTP 676
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 677 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATF 736
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V V +D++K ++ +++L + Y
Sbjct: 737 PRNMEALARKTLTKPIEIVVGGKSVVAPE--ITQIVEV-RNDDQKFVRLLELLGNLYSSD 793
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+E + L V + L+ L KGY SI G + I
Sbjct: 794 -ENEDARALIFVDRQEAADALLRELMRKGYPCMSIHGGKDQI 834
>gi|257086368|ref|ZP_05580729.1| helicase [Enterococcus faecalis D6]
gi|422722962|ref|ZP_16779511.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
gi|256994398|gb|EEU81700.1| helicase [Enterococcus faecalis D6]
gi|315026985|gb|EFT38917.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2137]
Length = 433
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 259 LLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
LL + SQE A ++ R+ KPL+ + +L GA + QI L+ PE L+ TP
Sbjct: 70 LLIIAPSQELAMQIAEVARTWAKPLQ---LTVQTLIGGANVSRQIDKLKK-RPEVLIGTP 125
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
R+L+L+ K + V +V+D +D L + + LSL +Q ++ P + +VF
Sbjct: 126 GRILELMKNKKVKAQLVKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVF 177
>gi|361130681|gb|EHL02431.1| putative Pre-mRNA-processing ATP-dependent RNA helicase prp5
[Glarea lozoyensis 74030]
Length = 1084
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 23/225 (10%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP L+A G+ V + GA I QI L+ E +V TP
Sbjct: 527 GPIGLIMTPTRELATQIHKECKPFLRAMGLRAVCAYGGAPIKDQIADLKRGA-EIIVCTP 585
Query: 315 ERLLKLV---SLKAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L+ S + ++ V+ +V+D D + G +++ + +P T++F+
Sbjct: 586 GRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIFANIRPDRQTILFS--- 642
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSAC---IIQSVNVCASDEEKILKGIQVLDHAY 425
++P + + L + +V +S I Q V V ++EK + +++L Y
Sbjct: 643 --ATMPRIMDALAKKTLNSPVEITVGGRSVVAPEITQIVEV-REEKEKFHRLLELLGELY 699
Query: 426 GDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
E + L V + K +L+ L KGY SI G + I
Sbjct: 700 D---KDEDARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKDQI 741
>gi|317030312|ref|XP_001392304.2| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Aspergillus
niger CBS 513.88]
gi|143359932|sp|A2QQA8.2|PRP5_ASPNC RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
Length = 1180
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 15/222 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 620 GPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGA-EIIVCTP 678
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 679 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATF 738
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V V +D++K ++ +++L + Y
Sbjct: 739 PRNMEALARKTLTKPIEIVVGGKSVVAPE--ITQIVEV-RNDDQKFVRLLELLGNLYSSD 795
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+E + L V + L+ L KGY SI G + I
Sbjct: 796 -ENEDARALIFVDRQEAADALLRELMRKGYPCMSIHGGKDQI 836
>gi|365904929|ref|ZP_09442688.1| ATP-dependent RNA helicase [Lactobacillus versmoldensis KCTC 3814]
Length = 408
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 15/155 (9%)
Query: 211 WKCYSSAKDI--LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268
+ + KDI + +GS T+ + ++ T K+G +L L SQE
Sbjct: 30 YLPFKEGKDIVAMAPTGSGKTLGFVMPMIETLV------PKDGLQ-----ILILEPSQEL 78
Query: 269 AAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
A +VR+V +PL KA G ++ GA Q+ L+ +PE LV+T RL +L + +
Sbjct: 79 AIQVRTVIQPLAKAVGCSVQAVTGGANPQRQLKKLKE-KPEILVATLGRLKELTDSRKVK 137
Query: 328 VSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTV 362
+ V ++VD D + L +RQ++ P V
Sbjct: 138 LGNVQTVIVDEADEMLNETKLDSVRQTLDLMPADV 172
>gi|225559706|gb|EEH07988.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Ajellomyces
capsulatus G186AR]
Length = 1201
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 118/270 (43%), Gaps = 22/270 (8%)
Query: 198 DNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFT 255
+NP + S I S +D++ +GS TI A+++ + ++ E +
Sbjct: 587 ENPTSIQSQAI---PAIMSGRDVIGVAKTGSGKTI---AFLLPMFRHIMDQRPLE--NME 638
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 639 GPIGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIIVCTP 697
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G ++R + +P TV+F+
Sbjct: 698 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRPQRQTVLFSATF 757
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L + + +SV + I Q V V D K ++ + +L Y D
Sbjct: 758 PRNMEALARKTLAKPVEIIVGGKSVVAPE--ITQIVEVRNQD-TKFVRLLALLGELYADD 814
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
+E + L V + L+ L KGY
Sbjct: 815 -KNEDARALIFVDRQEAADGLLRDLMHKGY 843
>gi|424671141|ref|ZP_18108156.1| DEAD/DEAH box helicase [Enterococcus faecalis 599]
gi|402359701|gb|EJU94326.1| DEAD/DEAH box helicase [Enterococcus faecalis 599]
Length = 433
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL + SQE A ++ V + K+ + +L GA + QI L+ PE L+ TP R+
Sbjct: 70 LLIIAPSQELAMQIAEVARTWAKSLQLTVQTLIGGANVSRQIDKLKK-RPEVLIGTPGRI 128
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
L+L+ K + V +V+D +D L + + LSL +Q ++ P + +VF
Sbjct: 129 LELMKNKKVKAQLVKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVF 177
>gi|240280856|gb|EER44360.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Ajellomyces
capsulatus H143]
Length = 1200
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 118/270 (43%), Gaps = 22/270 (8%)
Query: 198 DNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFT 255
+NP + S I S +D++ +GS TI A+++ + ++ E +
Sbjct: 585 ENPTSIQSQAI---PAIMSGRDVIGVAKTGSGKTI---AFLLPMFRHIMDQRPLE--NME 636
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 637 GPIGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIIVCTP 695
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G ++R + +P TV+F+
Sbjct: 696 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRPQRQTVLFSATF 755
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L + + +SV + I Q V V D K ++ + +L Y D
Sbjct: 756 PRNMEALARKTLAKPVEIIVGGKSVVAPE--ITQIVEVRNQD-TKFVRLLALLGELYADD 812
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
+E + L V + L+ L KGY
Sbjct: 813 -KNEDARALIFVDRQEAADGLLRDLMHKGY 841
>gi|46108284|ref|XP_381200.1| hypothetical protein FG01024.1 [Gibberella zeae PH-1]
Length = 1227
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 103/224 (45%), Gaps = 21/224 (9%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LK G+ V + GA I QI L+ E +V TP
Sbjct: 670 GPIGLIMTPTRELAVQIHKDCKPFLKMMGLRAVCAYGGAPIREQIAELKRGA-EIIVCTP 728
Query: 315 ERLLKLVSL---KAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ + ++ V+ +V+D D + G +++ + +P T++F+
Sbjct: 729 GRMIDLLAANQGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIFANMRPDRQTILFS--- 785
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHAYG 426
++P + + L + + + +V +S A I+ + + K + +++L Y
Sbjct: 786 --ATMPRIIDSLTKKVLKNPIEVTVGGRSVVAKEIEQIVEVRDEPSKFHRVLELLGELYD 843
Query: 427 DHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
E + L V + K +L+ L KGY SI G + I
Sbjct: 844 ---RDEDARTLIFVERQEKADDLLKELMMKGYPCMSIHGGKDQI 884
>gi|408391854|gb|EKJ71221.1| hypothetical protein FPSE_08584 [Fusarium pseudograminearum CS3096]
Length = 1192
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 103/224 (45%), Gaps = 21/224 (9%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LK G+ V + GA I QI L+ E +V TP
Sbjct: 635 GPIGLIMTPTRELAVQIHKDCKPFLKMMGLRAVCAYGGAPIREQIAELKRGA-EIIVCTP 693
Query: 315 ERLLKLVSL---KAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ + ++ V+ +V+D D + G +++ + +P T++F+
Sbjct: 694 GRMIDLLAANQGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIFANMRPDRQTILFS--- 750
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHAYG 426
++P + + L + + + +V +S A I+ + + K + +++L Y
Sbjct: 751 --ATMPRIIDSLTKKVLKNPIEVTVGGRSVVAKEIEQIVEVRDEPSKFHRVLELLGELYD 808
Query: 427 DHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
E + L V + K +L+ L KGY SI G + I
Sbjct: 809 ---RDEDARTLIFVERQEKADDLLKELMMKGYPCMSIHGGKDQI 849
>gi|325089715|gb|EGC43025.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Ajellomyces
capsulatus H88]
Length = 1199
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 118/270 (43%), Gaps = 22/270 (8%)
Query: 198 DNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFT 255
+NP + S I S +D++ +GS TI A+++ + ++ E +
Sbjct: 585 ENPTSIQSQAI---PAIMSGRDVIGVAKTGSGKTI---AFLLPMFRHIMDQRPLE--NME 636
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 637 GPIGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIIVCTP 695
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G ++R + +P TV+F+
Sbjct: 696 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRILGNVRPQRQTVLFSATF 755
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L + + +SV + I Q V V D K ++ + +L Y D
Sbjct: 756 PRNMEALARKTLAKPVEIIVGGKSVVAPE--ITQIVEVRNQD-TKFVRLLALLGELYADD 812
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
+E + L V + L+ L KGY
Sbjct: 813 -KNEDARALIFVDRQEAADGLLRDLMHKGY 841
>gi|259046649|ref|ZP_05737050.1| ATP-dependent RNA helicase RhlE [Granulicatella adiacens ATCC
49175]
gi|259036814|gb|EEW38069.1| ATP-dependent RNA helicase RhlE [Granulicatella adiacens ATCC
49175]
Length = 395
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLK 319
L + SQE A ++ +V + K I L GA + Q+ L+ +PE +V TP RLL+
Sbjct: 63 LIVAPSQELAQQIGTVIREWKPLEIRVQVLAGGANVKRQVEKLKE-KPEIVVGTPGRLLE 121
Query: 320 LVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
L L+ + + V LLV+D D L + L+ R+ + P
Sbjct: 122 LSKLRKLKLHQVELLVLDEADYLLDPEQLNNTRELVKKLP 161
>gi|389750820|gb|EIM91893.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 443
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 89/199 (44%), Gaps = 21/199 (10%)
Query: 274 SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSL 333
+ C P IH+++++ G QI LRS + + +V TP R+L LVS + D+SGV
Sbjct: 114 TYCSP----PIHSIAIYGGVDKIPQIKALRSPDTKIVVGTPGRILDLVSDGSCDLSGVEY 169
Query: 334 LVVDRLDS-LSKGDTLSLIRQSISGKP----HTVVFNDCLTYTSVPAVQNLLLGSIN--- 385
LV+D D L KG + R KP T++F+ + P L +
Sbjct: 170 LVLDEADRMLDKGFENDIRRIVEHIKPIEERQTLMFS-----ATWPDAVRRLAATFQKDP 224
Query: 386 -RLSLNQSVASQSACIIQSVNVCASDEEK---ILKGIQVLDHAYGDHFHSEPLKVLYIVG 441
R+++ + +A + Q V V D EK + K +Q L E +VL V
Sbjct: 225 VRVTIGSDDLTANARVAQVVEVFDDDREKDSRLFKHLQTLSPKKKHASDPESDRVLIFVL 284
Query: 442 KDSKFQNLVSTLKCKGYSI 460
+ + +TLK GYS+
Sbjct: 285 YKKEATRVEATLKRSGYSV 303
>gi|315042594|ref|XP_003170673.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Arthroderma
gypseum CBS 118893]
gi|311344462|gb|EFR03665.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Arthroderma
gypseum CBS 118893]
Length = 1183
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 99/222 (44%), Gaps = 15/222 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ C+P LKA + V + GA I QI L+ E +V TP
Sbjct: 623 GPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIIVCTP 681
Query: 315 ERLLKLV---SLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGKPHTVVFNDCL 368
R++ L+ S + ++ V+ +V+D D + + I +I TV+F+
Sbjct: 682 GRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRPNRQTVLFSATF 741
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V V +D+ K ++ +++L + Y D
Sbjct: 742 PRNMEALARKTLSKPIEIIVGGRSVVAPE--ITQIVEV-RNDDAKFVRLLELLGNLYSDD 798
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+E + L V + L+ L KGY SI G + I
Sbjct: 799 -ENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQI 839
>gi|301348040|ref|ZP_07228781.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AB056]
gi|301596797|ref|ZP_07241805.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AB059]
Length = 344
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 19/222 (8%)
Query: 254 FTG-PFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
F G P L L ++E A ++ S K L F +H V+L G D Q L + + +V
Sbjct: 75 FRGEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLDANFVDIMV 134
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFND 366
+TP RL+ V K + + + LV+D D L + +++ + P T++F+
Sbjct: 135 ATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQRQTLMFSA 194
Query: 367 CLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYG 426
TY + + L + + + + + + V D+ ++L+ I
Sbjct: 195 TFTYDVLNLARQWLFEPVT-VEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDI-------- 245
Query: 427 DHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
EP+ KV+ + + + L LK GY + S I
Sbjct: 246 --LREEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEI 285
>gi|410516921|sp|Q4IP34.2|PRP5_GIBZE RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
Length = 1207
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 103/224 (45%), Gaps = 21/224 (9%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LK G+ V + GA I QI L+ E +V TP
Sbjct: 650 GPIGLIMTPTRELAVQIHKDCKPFLKMMGLRAVCAYGGAPIREQIAELKRGA-EIIVCTP 708
Query: 315 ERLLKLVSL---KAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ + ++ V+ +V+D D + G +++ + +P T++F+
Sbjct: 709 GRMIDLLAANQGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIFANMRPDRQTILFS--- 765
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHAYG 426
++P + + L + + + +V +S A I+ + + K + +++L Y
Sbjct: 766 --ATMPRIIDSLTKKVLKNPIEVTVGGRSVVAKEIEQIVEVRDEPSKFHRVLELLGELYD 823
Query: 427 DHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
E + L V + K +L+ L KGY SI G + I
Sbjct: 824 ---RDEDARTLIFVERQEKADDLLKELMMKGYPCMSIHGGKDQI 864
>gi|116334161|ref|YP_795688.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
gi|116099508|gb|ABJ64657.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
Length = 441
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 6/170 (3%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G L+ L SQE A + V + K + ++L GA + Q L+ PE +V TP
Sbjct: 61 GTQLIVLEPSQELAIQTSRVMRDWAKLLDLQVLALTGGANVKRQTERLKK-RPEVIVGTP 119
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVP 374
R+L LV+ + + + VSLL+VD D L G+TL +R P V + T P
Sbjct: 120 GRVLNLVTDRKLKLHLVSLLIVDEADDLLTGETLDTVRSIAQAAPADVQLG-FFSATDTP 178
Query: 375 AVQNL--LLG-SINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVL 421
+ L G ++ R+ + + +Q + V +++LK + L
Sbjct: 179 ILHELDQWFGQTVERIDVREQDQTQGVVRHGLLQVGMGKRDQMLKRLLAL 228
>gi|219111853|ref|XP_002177678.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410563|gb|EEC50492.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 595
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 16/212 (7%)
Query: 255 TGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVST 313
+GP L L ++E A ++ VCK + K G + +++ GA + QI L+ + +T
Sbjct: 39 SGPLGLILAPARELAYQIHVVCKNMAKPLGYKSTAVYGGAGVAEQIADLKRGT-HIVTAT 97
Query: 314 PERLLKLVSL---KAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDC 367
P RL+ ++++ K + + V+ +V+ DR+ + +S I ++ TV+F+
Sbjct: 98 PGRLIDILTMQSGKILSLQRVTYVVMDEADRMYDMGFAPQISAILAAVRPDRQTVLFSAT 157
Query: 368 LTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ L + + +SVAS S + Q D EK L+ +QVL G+
Sbjct: 158 FPKAVESLARKSLQYPVEVMVGGRSVASDS--VTQYAERVEED-EKFLRLLQVL----GE 210
Query: 428 HFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459
KV+ V + NL L GYS
Sbjct: 211 QVEGTK-KVIVFVDTQVRADNLFEQLLRNGYS 241
>gi|443926925|gb|ELU45471.1| DEAD/DEAH box RNA helicase [Rhizoctonia solani AG-1 IA]
Length = 1540
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 20/216 (9%)
Query: 253 SFTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGL-RSCEPEFL 310
+ GP + + ++E A ++ CKP LK + V + G+ I QI + + C E +
Sbjct: 970 TMEGPMAIVMTPTRELAVQIHRECKPFLKVLNLRAVCAYGGSPIKDQIAEMKKGC--EII 1027
Query: 311 VSTPERLLKLV---SLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVF 364
V TP R++ L+ S + ++ V+ LV+ DR+ + + I +I TV+F
Sbjct: 1028 VCTPGRMIDLLTANSGRVTNLRRVTYLVLDEADRMFDMGFEPQVMKIVNNIRPDRQTVLF 1087
Query: 365 NDCLTYTSVPAVQNLLLGSINRLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLD 422
+ + P + L I R L +V +S A I + ++E K + +++L
Sbjct: 1088 S-----ATFPKQMDSLARKILRKPLEITVGGRSVVAAEIDQIVEVRTEESKFNRLLEILG 1142
Query: 423 HAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
Y + + + L V + NL+ L KGY
Sbjct: 1143 QTYNEDSEA---RTLIFVDRQEAADNLLRELMRKGY 1175
>gi|326476402|gb|EGE00412.1| Pre-mRNA-processing ATP-dependent RNA helicase prp5 [Trichophyton
tonsurans CBS 112818]
Length = 1182
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 99/222 (44%), Gaps = 15/222 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ C+P LKA + V + GA I QI L+ E +V TP
Sbjct: 621 GPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIIVCTP 679
Query: 315 ERLLKLV---SLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGKPHTVVFNDCL 368
R++ L+ S + ++ V+ +V+D D + + I +I TV+F+
Sbjct: 680 GRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRPNRQTVLFSATF 739
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V V +D+ K ++ +++L + Y D
Sbjct: 740 PRNMEALARKTLSKPIEIIVGGRSVVAPE--ITQIVEV-RNDDAKFVRLLELLGNLYSDD 796
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+E + L V + L+ L KGY SI G + I
Sbjct: 797 -ENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQI 837
>gi|390354880|ref|XP_003728430.1| PREDICTED: ATP-dependent RNA helicase DDX42-like
[Strongylocentrotus purpuratus]
Length = 892
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 12/147 (8%)
Query: 199 NPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPF 258
+P + + G+ C I +T GS T + ++ D A K+ +G P
Sbjct: 175 SPTPIQAQGVPIAMCGRDVIGIAKT-GSGKTAAFVWPMLVHIMDQRAIKKGDG-----PI 228
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCE--PEFLVSTPE 315
L ++E A ++ K KA+ IH V + G + Q R+CE PE +V+TP
Sbjct: 229 GLICAPTRELAQQIYMEVKKFGKAYNIHVVCAYGGGNMHEQ---QRACEEGPEVIVATPG 285
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RL+ LV KA ++ VS L+ D D +
Sbjct: 286 RLIDLVKKKATNLRRVSYLIFDEADRM 312
>gi|167824801|ref|ZP_02456272.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 9]
Length = 351
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 19 PGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 74
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 75 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATL 134
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ N LL R+ + Q + S+S I Q+V+ + K ++LDH D
Sbjct: 135 D-GKIGSLTNRLLKDPERIEITQKIESRS-NIAQTVHYVDDRDHK----DRLLDHLLRD 187
>gi|257876634|ref|ZP_05656287.1| helicase [Enterococcus casseliflavus EC20]
gi|257810800|gb|EEV39620.1| helicase [Enterococcus casseliflavus EC20]
Length = 424
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L SSQE A +V V + +A G+ + L GA+ Q+ L+ +PE L+ TP R+
Sbjct: 72 LLILTSSQELAMQVTEVAREWAQAIGLTVLPLIGGASTKRQVEKLKD-KPEVLIGTPGRV 130
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSL 350
L+L+ K I + LV+D +D L K +L
Sbjct: 131 LELIKAKKIKTQQLQSLVLDEVDQLLKEGAFTL 163
>gi|325571068|ref|ZP_08146640.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
casseliflavus ATCC 12755]
gi|325156153|gb|EGC68339.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
casseliflavus ATCC 12755]
Length = 424
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L SSQE A +V V + +A G+ + L GA+ Q+ L+ +PE L+ TP R+
Sbjct: 72 LLILTSSQELAMQVTEVAREWAQAIGLTVLPLIGGASTKRQVEKLKD-KPEVLIGTPGRV 130
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSL 350
L+L+ K I + LV+D +D L K +L
Sbjct: 131 LELIKAKKIKTQQLQSLVLDEVDQLLKEGAFTL 163
>gi|304404872|ref|ZP_07386532.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
gi|304345751|gb|EFM11585.1| DEAD/DEAH box helicase domain protein [Paenibacillus
curdlanolyticus YK9]
Length = 503
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 19/143 (13%)
Query: 219 DILETSG-SSSTIVQIAWIVA--TAADSIARKEK---EGFSFTGPFL------------L 260
D LE +G T VQ I A AD AR + + +F P L +
Sbjct: 16 DALEAAGIKEPTAVQSEAIAALLAGADVTARSQTGSGKTLAFLLPMLEQLDSASSAVQAV 75
Query: 261 FLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLK 319
L +QE A ++ V + +A GI VSL GAA+ Q+ L+ +P+ +V TP R+ +
Sbjct: 76 VLAPTQELAMQITRVAQAYGEAVGIRVVSLIGGAAMSRQVENLKKHKPQLVVGTPGRIHE 135
Query: 320 LVSLKAIDVSGVSLLVVDRLDSL 342
L + + + +S V+ +V+D D +
Sbjct: 136 LAAGRKLKLSSVTKVVIDEADQV 158
>gi|257867729|ref|ZP_05647382.1| helicase [Enterococcus casseliflavus EC30]
gi|257874057|ref|ZP_05653710.1| helicase [Enterococcus casseliflavus EC10]
gi|257801812|gb|EEV30715.1| helicase [Enterococcus casseliflavus EC30]
gi|257808221|gb|EEV37043.1| helicase [Enterococcus casseliflavus EC10]
Length = 424
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L SSQE A +V V + +A G+ + L GA+ Q+ L+ +PE L+ TP R+
Sbjct: 72 LLILTSSQELAMQVTEVAREWAQAIGLTVLPLIGGASTKRQVEKLKD-KPEVLIGTPGRV 130
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSL 350
L+L+ K I + LV+D +D L K +L
Sbjct: 131 LELIKAKKIKTQQLQSLVLDEVDQLLKEGAFTL 163
>gi|326482407|gb|EGE06417.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Trichophyton
equinum CBS 127.97]
Length = 1182
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 99/222 (44%), Gaps = 15/222 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ C+P LKA + V + GA I QI L+ E +V TP
Sbjct: 621 GPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIIVCTP 679
Query: 315 ERLLKLV---SLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGKPHTVVFNDCL 368
R++ L+ S + ++ V+ +V+D D + + I +I TV+F+
Sbjct: 680 GRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRPNRQTVLFSATF 739
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V V +D+ K ++ +++L + Y D
Sbjct: 740 PRNMEALARKTLSKPIEIIVGGRSVVAPE--ITQIVEV-RNDDAKFVRLLELLGNLYSDD 796
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+E + L V + L+ L KGY SI G + I
Sbjct: 797 -ENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQI 837
>gi|312874238|ref|ZP_07734272.1| DEAD/DEAH box helicase [Lactobacillus iners LEAF 2052A-d]
gi|311090308|gb|EFQ48718.1| DEAD/DEAH box helicase [Lactobacillus iners LEAF 2052A-d]
Length = 405
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G + L + E A + ++V P +KA G+ +++L + Q+ L+ +P L++TP
Sbjct: 61 GGLAVILEPTSELAVQTKNVLLPYVKALGLKSIALVGAGNRNRQMEQLKKEKPSILIATP 120
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL---SKGDTLSLIRQSISGKPHTVVF 364
RL +S K I+ + LV+D D + +K + LS + Q++S V+F
Sbjct: 121 GRLFDFISAKKINYQDIKALVIDEADDILEFAKLNLLSALGQNLSSDAQIVLF 173
>gi|420264036|ref|ZP_14766671.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus sp.
C1]
gi|394768935|gb|EJF48812.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus sp.
C1]
Length = 424
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L SSQE A +V V + +A G+ + L GA+ Q+ L+ +PE L+ TP R+
Sbjct: 72 LLILTSSQELAMQVTEVAREWAQAIGLTVLPLIGGASTKRQVEKLKD-KPEVLIGTPGRV 130
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSL 350
L+L+ K I + LV+D +D L K +L
Sbjct: 131 LELIKAKKIKTQQLQSLVLDEVDQLLKEGAFTL 163
>gi|83719456|ref|YP_442523.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|83653281|gb|ABC37344.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 482
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 107 PGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 162
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 163 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPASRQTMLFSATL 222
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ N LL R+ + Q + S+S I Q+V+ + K ++LDH D
Sbjct: 223 D-GKIGSLTNRLLKDPERIEITQKIESRS-NIAQTVHYVDDRDHK----DRLLDHLLRD 275
>gi|330842567|ref|XP_003293247.1| hypothetical protein DICPUDRAFT_41749 [Dictyostelium purpureum]
gi|325076448|gb|EGC30233.1| hypothetical protein DICPUDRAFT_41749 [Dictyostelium purpureum]
Length = 551
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 9/163 (5%)
Query: 256 GPFLLFLVSSQEKAAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVST 313
GP LFL ++E A ++ K K F + T L+ G + Q L++ CE +VST
Sbjct: 181 GPIALFLAPTRELAQQIYLETLKYSKYFKLRTTVLYGGVSKQQQCKELKAGCE--IVVST 238
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTY 370
P RL+ ++ LKA ++ V+ LV+D D + G + I + T++F+
Sbjct: 239 PGRLIDMIKLKATKLNRVTYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLFSATFKQ 298
Query: 371 TSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEK 413
+++L I ++S+ Q+ S ++ I Q V V S+ EK
Sbjct: 299 NVEDFARSILTDPI-KISIGQA-GSANSDITQIVQVLKSESEK 339
>gi|332686285|ref|YP_004456059.1| ATP-dependent RNA helicase YfmL [Melissococcus plutonius ATCC
35311]
gi|332370294|dbj|BAK21250.1| ATP-dependent RNA helicase YfmL [Melissococcus plutonius ATCC
35311]
Length = 390
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 4/129 (3%)
Query: 255 TGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVST 313
+G LL + SQE A ++ V + K + T L GA I Q+ L+ +PE +V T
Sbjct: 66 SGNQLLIIAPSQELAMQITRVAQEWGKLLQLKTQVLIGGANIHRQVEKLKQ-KPEIVVGT 124
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI--SGKPHTVVFNDCLTYT 371
P R+ +L+ +K I + + +V+D +D L + D L++ +Q + S + +VF
Sbjct: 125 PGRIFELMKMKKIKSNSLRTIVIDEVDQLLQQDELTITKQLLNYSAFNYQIVFFSATAKN 184
Query: 372 SVPAVQNLL 380
+ +NL+
Sbjct: 185 VLTEAENLV 193
>gi|380491708|emb|CCF35128.1| DEAD/DEAH box helicase [Colletotrichum higginsianum]
Length = 1206
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 103/225 (45%), Gaps = 23/225 (10%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA G+ +V + GA I QI L+ E +V TP
Sbjct: 656 GPIGLIMTPTRELAVQIHRDCKPFLKAMGLRSVCAYGGAPIRDQIAELKRGA-EIVVCTP 714
Query: 315 ERLLKLVSL---KAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ + ++ V+ V+D D + G +++ + +P T++F+
Sbjct: 715 GRMIDLLAANQGRVTNLRRVTYAVLDEADRMFDMGFEPQVMKIFANIRPDRQTILFS--- 771
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSAC---IIQSVNVCASDEEKILKGIQVLDHAY 425
++P + + L + + + +V +S I Q V + D +K + +L Y
Sbjct: 772 --ATMPRIIDSLTKKVLKSPVEITVGGRSVVASDITQVVEIVPED-QKFYHLLGLLGELY 828
Query: 426 GDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
E + L V + K +L+ L KGY SI G + +
Sbjct: 829 D---KDEDARSLIFVERQEKADDLLKELMTKGYPCMSIHGGKDQV 870
>gi|167720206|ref|ZP_02403442.1| ATP-dependent RNA helicase [Burkholderia pseudomallei DM98]
Length = 347
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 12 PGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 67
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 68 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATL 127
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ N LL R+ + Q + S+S I Q+V+ + K ++LDH D
Sbjct: 128 D-GKIGSLTNRLLKDPERIEITQKIESRS-NIAQTVHYVDDRDHK----DRLLDHLLRD 180
>gi|262376303|ref|ZP_06069533.1| ATP-dependent RNA helicase rhlB [Acinetobacter lwoffii SH145]
gi|262308904|gb|EEY90037.1| ATP-dependent RNA helicase rhlB [Acinetobacter lwoffii SH145]
Length = 383
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 18/218 (8%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A ++ S + L + G++ V+L G D Q L + +V+TP
Sbjct: 79 PRALILAPTRELALQIESDAQDLAKYAGLNVVTLLGGVDFDKQKNQLNKAPVDIMVATPG 138
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFNDCLTY 370
RL+ V K + + + LV+D D L + +++ + P T++F+ +Y
Sbjct: 139 RLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRKEQRQTLMFSATFSY 198
Query: 371 TSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFH 430
+ Q L + + + + + + V +D+ K+L+ I
Sbjct: 199 DVLNLAQQWLFEPVT-VEIEPEKKTNADVEQRVYMVAKADKYKLLQEI----------LR 247
Query: 431 SEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
EP+ KV+ + + + L LK GY + S I
Sbjct: 248 DEPIEKVMIFANRRDQVRKLYDHLKRDGYKVVMLSGEI 285
>gi|395324143|gb|EJF56589.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 1073
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 97/215 (45%), Gaps = 20/215 (9%)
Query: 254 FTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVS 312
GP + + ++E A ++ CKP L+ G+ V + G+ I QI ++ E +V
Sbjct: 486 MEGPVAVVMTPTRELAVQIHRECKPFLRVLGLRAVCAYGGSPIKDQIAEMKKGA-EIIVC 544
Query: 313 TPERLLKLV---SLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFND 366
TP R++ L+ S + ++ V+ LV+ DR+ + + I +I TV+F+
Sbjct: 545 TPGRMIDLLTANSGRVTNLKRVTYLVLDEADRMFDMGFEPQVMKIVNNIRPDRQTVLFS- 603
Query: 367 CLTYTSVPAVQNLLLGSINRLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHA 424
+ P + L I R L +V +S A I+ + +E K + +++L
Sbjct: 604 ----ATFPRQMDSLARKILRKPLEITVGGRSVVAPEIEQIVEVRDEESKFNRLLEIL--- 656
Query: 425 YGDHFHSEP-LKVLYIVGKDSKFQNLVSTLKCKGY 458
G ++ +P + L V + NL+ L KGY
Sbjct: 657 -GQTYNEDPECRTLIFVDRQEGADNLLRELMRKGY 690
>gi|167846330|ref|ZP_02471838.1| ATP-dependent RNA helicase [Burkholderia pseudomallei B7210]
Length = 347
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 4 PGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 59
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 60 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATL 119
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ N LL R+ + Q + S+S I Q+V+ + K ++LDH D
Sbjct: 120 D-GKIGSLTNRLLKDPERIEITQKIESRS-NIAQTVHYVDDRDHK----DRLLDHLLRD 172
>gi|227555119|ref|ZP_03985166.1| ATP-dependent RNA helicase [Enterococcus faecalis HH22]
gi|227175787|gb|EEI56759.1| ATP-dependent RNA helicase [Enterococcus faecalis HH22]
Length = 401
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 259 LLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
LL + SQE A ++ R+ KPL+ + +L GA + QI L+ PE L+ TP
Sbjct: 70 LLIIAPSQELAMQIAEVARTWAKPLQ---LKVQTLIGGANVSRQIDKLKK-RPEVLIGTP 125
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
R+L+L+ K + + +V+D +D L + + LSL +Q ++ P + +VF
Sbjct: 126 GRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVF 177
>gi|257138731|ref|ZP_05586993.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 515
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 140 PGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 195
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 196 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPASRQTMLFSATL 255
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ N LL R+ + Q + S+S I Q+V+ + K ++LDH D
Sbjct: 256 D-GKIGSLTNRLLKDPERIEITQKIESRS-NIAQTVHYVDDRDHK----DRLLDHLLRD 308
>gi|213158663|ref|YP_002319961.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AB0057]
gi|417574004|ref|ZP_12224858.1| DEAD/DEAH box helicase [Acinetobacter baumannii Canada BC-5]
gi|421642751|ref|ZP_16083263.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-235]
gi|421646857|ref|ZP_16087296.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-251]
gi|421701131|ref|ZP_16140639.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-58]
gi|421802300|ref|ZP_16238253.1| DEAD/DEAH box helicase [Acinetobacter baumannii Canada BC1]
gi|213057823|gb|ACJ42725.1| DEAD/DEAH box helicase [Acinetobacter baumannii AB0057]
gi|400209572|gb|EJO40542.1| DEAD/DEAH box helicase [Acinetobacter baumannii Canada BC-5]
gi|404568185|gb|EKA73291.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-58]
gi|408512203|gb|EKK13849.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-235]
gi|408517003|gb|EKK18554.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-251]
gi|410404097|gb|EKP56170.1| DEAD/DEAH box helicase [Acinetobacter baumannii Canada BC1]
Length = 383
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 23/224 (10%)
Query: 254 FTG-PFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
F G P L L ++E A ++ S K L F +H V+L G D Q L + + +V
Sbjct: 75 FRGEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLDANFVDIMV 134
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFND 366
+TP RL+ V K + + + LV+D D L + +++ + P T++F+
Sbjct: 135 ATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQRQTLMFSA 194
Query: 367 CLTYTSVPAVQNLLLGSIN-RLSLNQSVASQSACIIQSVNVCA-SDEEKILKGIQVLDHA 424
TY + + L + + Q + + Q V V A D+ ++L+ I
Sbjct: 195 TFTYDVLNLARQWLFEPVTVEIEPEQKTNND---VEQRVYVVAKQDKYRLLQDI------ 245
Query: 425 YGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
EP+ KV+ + + + L LK GY + S I
Sbjct: 246 ----LREEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEI 285
>gi|29375590|ref|NP_814744.1| DEAD/DEAH box helicase [Enterococcus faecalis V583]
gi|257418599|ref|ZP_05595593.1| helicase [Enterococcus faecalis T11]
gi|422713488|ref|ZP_16770238.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
gi|422717485|ref|ZP_16774169.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
gi|422735183|ref|ZP_16791457.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
gi|29343051|gb|AAO80814.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis V583]
gi|257160427|gb|EEU90387.1| helicase [Enterococcus faecalis T11]
gi|315168025|gb|EFU12042.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1341]
gi|315574247|gb|EFU86438.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309B]
gi|315581598|gb|EFU93789.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0309A]
Length = 433
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 259 LLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
LL + SQE A ++ R+ KPL+ + +L GA + QI L+ PE L+ TP
Sbjct: 70 LLIIAPSQELAMQIAEVARTWAKPLQ---LKVQTLIGGANVSRQIDKLKK-RPEVLIGTP 125
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
R+L+L+ K + + +V+D +D L + + LSL +Q ++ P + +VF
Sbjct: 126 GRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVF 177
>gi|126439983|ref|YP_001059500.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
gi|126219476|gb|ABN82982.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 668]
Length = 514
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 137 PGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 192
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 193 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATL 252
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ N LL R+ + Q + S+S I Q+V+ + K ++LDH D
Sbjct: 253 D-GKIGSLTNRLLKDPERIEITQKIESRS-NIAQTVHYVDDRDHK----DRLLDHLLRD 305
>gi|340521284|gb|EGR51519.1| predicted protein [Trichoderma reesei QM6a]
Length = 1247
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 107/234 (45%), Gaps = 22/234 (9%)
Query: 247 KEKEGFSFT-GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRS 304
K++E T GP L + ++E A ++ CKP LK + V + GA I QI L+
Sbjct: 681 KDQEPLKDTDGPIGLIMTPTRELATQIHRDCKPFLKMMNLRAVCAYGGAPIREQIAELKR 740
Query: 305 CEPEFLVSTPERLLKLVSL---KAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP- 359
E +V TP R++ L++ + ++ V+ +V+D D + G +++ + +P
Sbjct: 741 GA-EIIVCTPGRMIDLLAANQGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIFANMRPD 799
Query: 360 -HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEE--KILK 416
T++F+ ++P + + L + + + +V +S + + EE K L+
Sbjct: 800 RQTILFS-----ATMPRLIDSLTKKVLKSPIEITVGGRSVVAKEITQIVEVREENTKFLR 854
Query: 417 GIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+++L Y E + L V + K +L+ L KGY SI G + +
Sbjct: 855 VLELLGELYD---KDEDARTLIFVERQEKADDLLKELMQKGYPCMSIHGGKDQV 905
>gi|441178602|ref|ZP_20970043.1| DEAD/DEAH box helicase domain protein, partial [Streptomyces
rimosus subsp. rimosus ATCC 10970]
gi|440614503|gb|ELQ77770.1| DEAD/DEAH box helicase domain protein, partial [Streptomyces
rimosus subsp. rimosus ATCC 10970]
Length = 440
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 16/162 (9%)
Query: 185 AIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQIAWIVATAAD 242
A++ A+R GV + P+ + + +D+L +GS T+ A+ +A +
Sbjct: 36 ALQTALRAQGVTEPFPIQAATL-----PATLAGQDVLGRGRTGSGKTL---AFGLAMLSR 87
Query: 243 SIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITG 301
+ R+ + P L LV ++E A +V P A G+ T ++ G +I+ QI
Sbjct: 88 TAGRRAES----KSPLALVLVPTRELATQVTDALAPYAAAVGLRTTTVVGGTSINRQIAA 143
Query: 302 LRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLS 343
LR E LV+TP RL L+ +A + V++ V+D D ++
Sbjct: 144 LRKGA-EILVATPGRLADLLDRRACTLGQVAITVLDEADQMT 184
>gi|310790963|gb|EFQ26496.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 1112
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 98/213 (46%), Gaps = 20/213 (9%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA G+ +V + GA I QI L+ E +V TP
Sbjct: 562 GPIGLIMTPTRELAVQIHRDCKPFLKAMGLRSVCAYGGAPIREQIAELKRGA-EIVVCTP 620
Query: 315 ERLLKLVSL---KAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ + ++ V+ V+D D + G +++ + +P T++F+
Sbjct: 621 GRMIDLLAANQGRVTNLRRVTYAVLDEADRMFDMGFEPQVMKIFANIRPDRQTILFS--- 677
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSAC---IIQSVNVCASDEEKILKGIQVLDHAY 425
++P + + L + + + +V +S I Q V + D +K + +L Y
Sbjct: 678 --ATMPRIIDSLTKKVLKSPVEITVGGRSVVASDITQIVEIVPED-QKFYHLLGLLGELY 734
Query: 426 GDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
E + L V + K +L+ L KGY
Sbjct: 735 D---KDEDARSLVFVERQEKADDLLKELMTKGY 764
>gi|332653730|ref|ZP_08419474.1| ATP-dependent RNA helicase DeaD [Ruminococcaceae bacterium D16]
gi|332516816|gb|EGJ46421.1| ATP-dependent RNA helicase DeaD [Ruminococcaceae bacterium D16]
Length = 391
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L L ++E A ++R + L AF G+ TV L+ G ID QIT L+ +P+ +V+TP RL
Sbjct: 84 LVLAPTRELAIQIRDELRDLCAFKEGVRTVCLYGGQPIDKQITQLKK-DPQIVVATPGRL 142
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSL 342
+ V + + + V +V+D D +
Sbjct: 143 MDHVKRRTVRLDKVQTVVLDEADRM 167
>gi|167911540|ref|ZP_02498631.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 112]
Length = 337
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 5 PGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 60
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 61 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATL 120
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ N LL R+ + Q + S+S I Q+V+ + K ++LDH D
Sbjct: 121 D-GKIGSLTNRLLKDPERIEITQKIESRS-NIAQTVHYVDDRDHK----DRLLDHLLRD 173
>gi|53719796|ref|YP_108782.1| ATP-dependent RNA helicase [Burkholderia pseudomallei K96243]
gi|53724110|ref|YP_103224.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei ATCC 23344]
gi|67639288|ref|ZP_00438162.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|121599488|ref|YP_993402.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124385746|ref|YP_001029162.1| ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC 10229]
gi|126448376|ref|YP_001080910.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|166999673|ref|ZP_02265508.1| DEAD/DEAH box helicase [Burkholderia mallei PRL-20]
gi|167903298|ref|ZP_02490503.1| ATP-dependent RNA helicase [Burkholderia pseudomallei NCTC 13177]
gi|217421948|ref|ZP_03453452.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|254177947|ref|ZP_04884602.1| DEAD/DEAH box helicase [Burkholderia mallei ATCC 10399]
gi|254200174|ref|ZP_04906540.1| DEAD/DEAH box helicase [Burkholderia mallei FMH]
gi|254206512|ref|ZP_04912864.1| DEAD/DEAH box helicase [Burkholderia mallei JHU]
gi|254257950|ref|ZP_04949004.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
gi|254297179|ref|ZP_04964632.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 406e]
gi|254358076|ref|ZP_04974349.1| DEAD/DEAH box helicase [Burkholderia mallei 2002721280]
gi|386861300|ref|YP_006274249.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026b]
gi|418382709|ref|ZP_12966643.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354a]
gi|418538458|ref|ZP_13104067.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026a]
gi|418553007|ref|ZP_13117849.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354e]
gi|52210210|emb|CAH36189.1| putative ATP-dependent RNA helicase [Burkholderia pseudomallei
K96243]
gi|52427533|gb|AAU48126.1| ATP-dependent RNA helicase RhlE, putative [Burkholderia mallei ATCC
23344]
gi|121228298|gb|ABM50816.1| DEAD/DEAH box helicase [Burkholderia mallei SAVP1]
gi|124293766|gb|ABN03035.1| putative ATP-dependent RNA helicase RhlE [Burkholderia mallei NCTC
10229]
gi|126241246|gb|ABO04339.1| DEAD/DEAH box helicase [Burkholderia mallei NCTC 10247]
gi|147749770|gb|EDK56844.1| DEAD/DEAH box helicase [Burkholderia mallei FMH]
gi|147753955|gb|EDK61020.1| DEAD/DEAH box helicase [Burkholderia mallei JHU]
gi|148027203|gb|EDK85224.1| DEAD/DEAH box helicase [Burkholderia mallei 2002721280]
gi|157807478|gb|EDO84648.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 406e]
gi|160698986|gb|EDP88956.1| DEAD/DEAH box helicase [Burkholderia mallei ATCC 10399]
gi|217395690|gb|EEC35708.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 576]
gi|238519823|gb|EEP83289.1| dead/deah box helicase [Burkholderia mallei GB8 horse 4]
gi|243064323|gb|EES46509.1| DEAD/DEAH box helicase [Burkholderia mallei PRL-20]
gi|254216639|gb|EET06023.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1710a]
gi|385347744|gb|EIF54394.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026a]
gi|385372277|gb|EIF77399.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354e]
gi|385377051|gb|EIF81671.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 354a]
gi|385658428|gb|AFI65851.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1026b]
Length = 516
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 138 PGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 193
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 194 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATL 253
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ N LL R+ + Q + S+S I Q+V+ + K ++LDH D
Sbjct: 254 D-GKIGSLTNRLLKDPERIEITQKIESRS-NIAQTVHYVDDRDHK----DRLLDHLLRD 306
>gi|76809038|ref|YP_334004.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
gi|76578491|gb|ABA47966.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1710b]
Length = 529
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 151 PGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 206
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 207 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATL 266
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ N LL R+ + Q + S+S I Q+V+ + K ++LDH D
Sbjct: 267 D-GKIGSLTNRLLKDPERIEITQKIESRS-NIAQTVHYVDDRDHK----DRLLDHLLRD 319
>gi|134277372|ref|ZP_01764087.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|226198998|ref|ZP_03794561.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
gi|134251022|gb|EBA51101.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 305]
gi|225929098|gb|EEH25122.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pakistan 9]
Length = 513
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 135 PGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 190
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 191 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATL 250
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ N LL R+ + Q + S+S I Q+V+ + K ++LDH D
Sbjct: 251 D-GKIGSLTNRLLKDPERIEITQKIESRS-NIAQTVHYVDDRDHK----DRLLDHLLRD 303
>gi|126453899|ref|YP_001066782.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|237812839|ref|YP_002897290.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
gi|242315830|ref|ZP_04814846.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|254179293|ref|ZP_04885892.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1655]
gi|254189321|ref|ZP_04895832.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pasteur 52237]
gi|254198045|ref|ZP_04904467.1| DEAD/DEAH box helicase [Burkholderia pseudomallei S13]
gi|403519212|ref|YP_006653346.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
gi|418540516|ref|ZP_13106052.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258a]
gi|418546765|ref|ZP_13111959.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258b]
gi|126227541|gb|ABN91081.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106a]
gi|157937000|gb|EDO92670.1| DEAD/DEAH box helicase [Burkholderia pseudomallei Pasteur 52237]
gi|169654786|gb|EDS87479.1| DEAD/DEAH box helicase [Burkholderia pseudomallei S13]
gi|184209833|gb|EDU06876.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1655]
gi|237504437|gb|ACQ96755.1| dead/deah box helicase [Burkholderia pseudomallei MSHR346]
gi|242139069|gb|EES25471.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 1106b]
gi|385361649|gb|EIF67530.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258a]
gi|385363056|gb|EIF68839.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 1258b]
gi|403074855|gb|AFR16435.1| DEAD/DEAH box helicase [Burkholderia pseudomallei BPC006]
Length = 513
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 135 PGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 190
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 191 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATL 250
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ N LL R+ + Q + S+S I Q+V+ + K ++LDH D
Sbjct: 251 D-GKIGSLTNRLLKDPERIEITQKIESRS-NIAQTVHYVDDRDHK----DRLLDHLLRD 303
>gi|343085559|ref|YP_004774854.1| DEAD/DEAH box helicase [Cyclobacterium marinum DSM 745]
gi|342354093|gb|AEL26623.1| DEAD/DEAH box helicase domain protein [Cyclobacterium marinum DSM
745]
Length = 378
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 14/132 (10%)
Query: 217 AKDIL--ETSGSSSTIVQIAWIV-ATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
KD+L +GS T+ +A I+ A+K ++ P +L LV S+E A +V
Sbjct: 38 GKDLLGIAKTGSGKTVSYVAPIINHLIGGKQAKKSRQ------PKVLVLVPSRELAIQVV 91
Query: 274 SVCKPLK---AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSG 330
V K L + +++++ G +I+ Q+ GL + LV+TP RLL L S AID+S
Sbjct: 92 EVFKELSLKSPIPVKSMAVYGGVSINPQMKGLFGVD--ILVATPGRLLDLQSSAAIDLSK 149
Query: 331 VSLLVVDRLDSL 342
VS LV+D D +
Sbjct: 150 VSTLVLDEADKM 161
>gi|300859667|ref|ZP_07105755.1| DEAD/DEAH box helicase [Enterococcus faecalis TUSoD Ef11]
gi|428766517|ref|YP_007152628.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis str. Symbioflor 1]
gi|300850485|gb|EFK78234.1| DEAD/DEAH box helicase [Enterococcus faecalis TUSoD Ef11]
gi|427184690|emb|CCO71914.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis str. Symbioflor 1]
Length = 433
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 259 LLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
LL + SQE A ++ R+ KPL+ + +L GA + QI L+ PE L+ TP
Sbjct: 70 LLIIAPSQELAMQIAEVARTWAKPLQ---LTVQTLIGGANVSRQIDKLKK-RPEVLIGTP 125
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
R+L+L+ K + + +V+D +D L + + LSL +Q ++ P + +VF
Sbjct: 126 GRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVF 177
>gi|167581446|ref|ZP_02374320.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis TXDOH]
Length = 517
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 142 PGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 197
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 198 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPASRQTMLFSATL 257
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ N LL R+ + Q + S+S I Q+V+ + K ++LDH D
Sbjct: 258 D-GKIGSLTNRLLKDPERIEITQKIESRS-NIAQTVHYVDDRDHK----DRLLDHLLRD 310
>gi|256962563|ref|ZP_05566734.1| helicase [Enterococcus faecalis HIP11704]
gi|307272025|ref|ZP_07553291.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
gi|256953059|gb|EEU69691.1| helicase [Enterococcus faecalis HIP11704]
gi|306511320|gb|EFM80324.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0855]
Length = 433
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 259 LLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
LL + SQE A ++ R+ KPL+ + +L GA + QI L+ PE L+ TP
Sbjct: 70 LLIIAPSQELAMQIAEVARTWAKPLQ---LTVQTLIGGANVSRQIDKLKK-RPEVLIGTP 125
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
R+L+L+ K + + +V+D +D L + + LSL +Q ++ P + +VF
Sbjct: 126 GRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVF 177
>gi|255974078|ref|ZP_05424664.1| helicase [Enterococcus faecalis T2]
gi|307278940|ref|ZP_07559999.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
gi|255966950|gb|EET97572.1| helicase [Enterococcus faecalis T2]
gi|306504327|gb|EFM73538.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0860]
Length = 433
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 259 LLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
LL + SQE A ++ R+ KPL+ + +L GA + QI L+ PE L+ TP
Sbjct: 70 LLIIAPSQELAMQIAEVARTWAKPLQ---LTVQTLIGGANVSRQIDKLKK-RPEVLIGTP 125
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
R+L+L+ K + + +V+D +D L + + LSL +Q ++ P + +VF
Sbjct: 126 GRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVF 177
>gi|229546856|ref|ZP_04435581.1| ATP-dependent RNA helicase [Enterococcus faecalis TX1322]
gi|256761767|ref|ZP_05502347.1| helicase [Enterococcus faecalis T3]
gi|256852662|ref|ZP_05558033.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
gi|307290029|ref|ZP_07569953.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
gi|312901032|ref|ZP_07760323.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
gi|422685587|ref|ZP_16743803.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
gi|422699568|ref|ZP_16757432.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
gi|229308021|gb|EEN74008.1| ATP-dependent RNA helicase [Enterococcus faecalis TX1322]
gi|256683018|gb|EEU22713.1| helicase [Enterococcus faecalis T3]
gi|256712007|gb|EEU27044.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis T8]
gi|306498871|gb|EFM68365.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0411]
gi|311291858|gb|EFQ70414.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0470]
gi|315029698|gb|EFT41630.1| DEAD/DEAH box helicase [Enterococcus faecalis TX4000]
gi|315171946|gb|EFU15963.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1342]
Length = 433
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 259 LLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
LL + SQE A ++ R+ KPL+ + +L GA + QI L+ PE L+ TP
Sbjct: 70 LLIIAPSQELAMQIAEVARTWAKPLQ---LTVQTLIGGANVSRQIDKLKK-RPEVLIGTP 125
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
R+L+L+ K + + +V+D +D L + + LSL +Q ++ P + +VF
Sbjct: 126 GRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVF 177
>gi|257415628|ref|ZP_05592622.1| helicase [Enterococcus faecalis ARO1/DG]
gi|422730871|ref|ZP_16787252.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
gi|422739835|ref|ZP_16795001.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
gi|257157456|gb|EEU87416.1| helicase [Enterococcus faecalis ARO1/DG]
gi|295113817|emb|CBL32454.1| Superfamily II DNA and RNA helicases [Enterococcus sp. 7L76]
gi|315144394|gb|EFT88410.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2141]
gi|315162926|gb|EFU06943.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0645]
Length = 433
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 259 LLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
LL + SQE A ++ R+ KPL+ + +L GA + QI L+ PE L+ TP
Sbjct: 70 LLIIAPSQELAMQIAEVARTWAKPLQ---LTVQTLIGGANVSRQIDKLKK-RPEVLIGTP 125
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
R+L+L+ K + + +V+D +D L + + LSL +Q ++ P + +VF
Sbjct: 126 GRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVF 177
>gi|421513301|ref|ZP_15960078.1| ATP-dependent RNA helicase YfmL [Enterococcus faecalis ATCC 29212]
gi|401673555|gb|EJS79936.1| ATP-dependent RNA helicase YfmL [Enterococcus faecalis ATCC 29212]
Length = 433
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 259 LLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
LL + SQE A ++ R+ KPL+ + +L GA + QI L+ PE L+ TP
Sbjct: 70 LLIIAPSQELAMQIAEVARTWAKPLQ---LTVQTLIGGANVSRQIDKLKK-RPEVLIGTP 125
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
R+L+L+ K + + +V+D +D L + + LSL +Q ++ P + +VF
Sbjct: 126 GRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVF 177
>gi|424903669|ref|ZP_18327182.1| ATP-dependent RNA helicase [Burkholderia thailandensis MSMB43]
gi|390931542|gb|EIP88943.1| ATP-dependent RNA helicase [Burkholderia thailandensis MSMB43]
Length = 508
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 134 PGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 189
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 190 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPASRQTMLFSATL 249
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ N LL R+ + Q + S+S I Q+V+ + K ++LDH D
Sbjct: 250 D-GKIGSLTNRLLKDPERIEITQKIESRS-NIAQTVHYVDDRDHK----DRLLDHLLRD 302
>gi|424757098|ref|ZP_18184862.1| DEAD/DEAH box helicase [Enterococcus faecalis R508]
gi|402407626|gb|EJV40143.1| DEAD/DEAH box helicase [Enterococcus faecalis R508]
Length = 433
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 259 LLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
LL + SQE A ++ R+ KPL+ + +L GA + QI L+ PE L+ TP
Sbjct: 70 LLIIAPSQELAMQIAEVARTWAKPLQ---LTVQTLIGGANVSRQIDKLKK-RPEVLIGTP 125
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
R+L+L+ K + + +V+D +D L + + LSL +Q ++ P + +VF
Sbjct: 126 GRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVF 177
>gi|333395779|ref|ZP_08477596.1| putative ATP-dependent RNA helicase [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
Length = 419
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L +QE A + R+ +P +A G+ ++ GA I QI L+ +PE LV+TP RL
Sbjct: 65 LLILAPAQELAMQERTAIQPFAQAAGLKIQAVAGGANIRRQIERLKQ-KPEVLVATPGRL 123
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377
L+L+ + + + + +V+D D L ++ + R + P + T +P +
Sbjct: 124 LELIDQRKVKMHKLQTIVIDEADKLLTDESREMTRDVVRRAPGETQLA-FFSATKIPVLD 182
Query: 378 NL 379
L
Sbjct: 183 EL 184
>gi|422730000|ref|ZP_16786395.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
gi|315149531|gb|EFT93547.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0012]
Length = 433
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 259 LLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
LL + SQE A ++ R+ KPL+ + +L GA + QI L+ PE L+ TP
Sbjct: 70 LLIIAPSQELAMQIAEVARTWAKPLQ---LTVQTLIGGANVSRQIDKLKK-RPEVLIGTP 125
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
R+L+L+ K + + +V+D +D L + + LSL +Q ++ P + +VF
Sbjct: 126 GRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVF 177
>gi|257083920|ref|ZP_05578281.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
gi|256991950|gb|EEU79252.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis Fly1]
Length = 433
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 259 LLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
LL + SQE A ++ R+ KPL+ + +L GA + QI L+ PE L+ TP
Sbjct: 70 LLIIAPSQELAMQIAEVSRTWAKPLQ---LTVQTLIGGANVSRQIDKLKK-RPEVLIGTP 125
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
R+L+L+ K + + +V+D +D L + + LSL +Q ++ P + +VF
Sbjct: 126 GRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVF 177
>gi|257081262|ref|ZP_05575623.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
gi|256989292|gb|EEU76594.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecalis E1Sol]
Length = 433
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 259 LLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
LL + SQE A ++ R+ KPL+ + +L GA + QI L+ PE L+ TP
Sbjct: 70 LLIIAPSQELAMQIAEVARTWAKPLQ---LTVQTLIGGANVSRQIDKLKK-RPEVLIGTP 125
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
R+L+L+ K + + +V+D +D L + + LSL +Q ++ P + +VF
Sbjct: 126 GRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVF 177
>gi|229548950|ref|ZP_04437675.1| ATP-dependent RNA helicase [Enterococcus faecalis ATCC 29200]
gi|255971463|ref|ZP_05422049.1| helicase [Enterococcus faecalis T1]
gi|256617933|ref|ZP_05474779.1| helicase [Enterococcus faecalis ATCC 4200]
gi|256960194|ref|ZP_05564365.1| helicase [Enterococcus faecalis Merz96]
gi|257089418|ref|ZP_05583779.1| helicase [Enterococcus faecalis CH188]
gi|257421258|ref|ZP_05598248.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
gi|293382558|ref|ZP_06628492.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis R712]
gi|293387841|ref|ZP_06632380.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis S613]
gi|312904571|ref|ZP_07763729.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
gi|312906839|ref|ZP_07765836.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
gi|312952719|ref|ZP_07771581.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
gi|312978906|ref|ZP_07790632.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
gi|422689634|ref|ZP_16747738.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
gi|422692299|ref|ZP_16750321.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
gi|422705619|ref|ZP_16763415.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
gi|422727533|ref|ZP_16783974.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
gi|229305971|gb|EEN71967.1| ATP-dependent RNA helicase [Enterococcus faecalis ATCC 29200]
gi|255962481|gb|EET94957.1| helicase [Enterococcus faecalis T1]
gi|256597460|gb|EEU16636.1| helicase [Enterococcus faecalis ATCC 4200]
gi|256950690|gb|EEU67322.1| helicase [Enterococcus faecalis Merz96]
gi|256998230|gb|EEU84750.1| helicase [Enterococcus faecalis CH188]
gi|257163082|gb|EEU93042.1| ATP-dependent RNA helicase [Enterococcus faecalis X98]
gi|291080106|gb|EFE17470.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis R712]
gi|291082688|gb|EFE19651.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Enterococcus
faecalis S613]
gi|310627093|gb|EFQ10376.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 512]
gi|310629235|gb|EFQ12518.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0102]
gi|310632084|gb|EFQ15367.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0635]
gi|311288343|gb|EFQ66899.1| DEAD/DEAH box helicase [Enterococcus faecalis DAPTO 516]
gi|315153085|gb|EFT97101.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0031]
gi|315156858|gb|EFU00875.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0043]
gi|315157644|gb|EFU01661.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0312]
gi|315577375|gb|EFU89566.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0630]
Length = 433
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 259 LLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
LL + SQE A ++ R+ KPL+ + +L GA + QI L+ PE L+ TP
Sbjct: 70 LLIIAPSQELAMQIAEVARTWAKPLQ---LTVQTLIGGANVSRQIDKLKK-RPEVLIGTP 125
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
R+L+L+ K + + +V+D +D L + + LSL +Q ++ P + +VF
Sbjct: 126 GRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVF 177
>gi|227517933|ref|ZP_03947982.1| ATP-dependent RNA helicase [Enterococcus faecalis TX0104]
gi|227074621|gb|EEI12584.1| ATP-dependent RNA helicase [Enterococcus faecalis TX0104]
Length = 433
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 259 LLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
LL + SQE A ++ R+ KPL+ + +L GA + QI L+ PE L+ TP
Sbjct: 70 LLIIAPSQELAMQIAEVARTWAKPLQ---LTVQTLIGGANVSRQIDKLKK-RPEVLIGTP 125
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
R+L+L+ K + + +V+D +D L + + LSL +Q ++ P + +VF
Sbjct: 126 GRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVF 177
>gi|307289389|ref|ZP_07569343.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
gi|422703294|ref|ZP_16761116.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
gi|306499644|gb|EFM69007.1| DEAD/DEAH box helicase [Enterococcus faecalis TX0109]
gi|315165126|gb|EFU09143.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1302]
Length = 433
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 259 LLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
LL + SQE A ++ R+ KPL+ + +L GA + QI L+ PE L+ TP
Sbjct: 70 LLIIAPSQELAMQIAEVARTWAKPLQ---LTVQTLIGGANVSRQIDKLKK-RPEVLIGTP 125
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
R+L+L+ K + + +V+D +D L + + LSL +Q ++ P + +VF
Sbjct: 126 GRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVF 177
>gi|420145033|ref|ZP_14652510.1| ATP-dependent RNA helicase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398403360|gb|EJN56612.1| ATP-dependent RNA helicase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 419
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L +QE A + R+ +P +A G+ ++ GA I QI L+ +PE LV+TP RL
Sbjct: 65 LLILAPAQELAMQERTAIQPFAQAAGLKIQAVAGGANIRRQIERLKQ-KPEVLVATPGRL 123
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377
L+L+ + + + + +V+D D L ++ + R + P + T +P +
Sbjct: 124 LELIDQRKVKMHKLQTIVIDEADKLLTDESREMTRDVVRRAPGETQLA-FFSATKIPVLD 182
Query: 378 NL 379
L
Sbjct: 183 EL 184
>gi|424679097|ref|ZP_18115928.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV103]
gi|424682311|ref|ZP_18119086.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV116]
gi|424684046|ref|ZP_18120774.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV129]
gi|424686887|ref|ZP_18123549.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV25]
gi|424690043|ref|ZP_18126579.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV31]
gi|424692297|ref|ZP_18128800.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV37]
gi|424698035|ref|ZP_18134343.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV41]
gi|424700562|ref|ZP_18136746.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV62]
gi|424705590|ref|ZP_18141620.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV63]
gi|424712412|ref|ZP_18144595.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV65]
gi|424716276|ref|ZP_18145589.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV68]
gi|424721623|ref|ZP_18150705.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV72]
gi|424723714|ref|ZP_18152669.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV73]
gi|424729454|ref|ZP_18158055.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV81]
gi|424735071|ref|ZP_18163544.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV85]
gi|424751832|ref|ZP_18179853.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV93]
gi|402349361|gb|EJU84312.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV116]
gi|402349378|gb|EJU84328.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV103]
gi|402362982|gb|EJU97492.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV129]
gi|402365177|gb|EJU99603.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV31]
gi|402366594|gb|EJV00964.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV25]
gi|402373653|gb|EJV07724.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV62]
gi|402373944|gb|EJV07992.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV41]
gi|402378688|gb|EJV12526.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV37]
gi|402379014|gb|EJV12835.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV63]
gi|402380906|gb|EJV14645.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV65]
gi|402388469|gb|EJV21908.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV68]
gi|402390790|gb|EJV24111.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV72]
gi|402393908|gb|EJV27114.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV81]
gi|402397423|gb|EJV30441.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV73]
gi|402404688|gb|EJV37304.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV85]
gi|402405328|gb|EJV37925.1| DEAD/DEAH box helicase [Enterococcus faecalis ERV93]
Length = 433
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 259 LLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
LL + SQE A ++ R+ KPL+ + +L GA + QI L+ PE L+ TP
Sbjct: 70 LLIIAPSQELAMQIAEVARTWAKPLQ---LTVQTLIGGANVSRQIDKLKK-RPEVLIGTP 125
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
R+L+L+ K + + +V+D +D L + + LSL +Q ++ P + +VF
Sbjct: 126 GRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVF 177
>gi|388580695|gb|EIM21008.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 969
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 69/307 (22%), Positives = 134/307 (43%), Gaps = 44/307 (14%)
Query: 172 LDCP---SKFLIL-----CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL-- 221
+DCP +K+ +L CL I+ ++ D P + + + S +D++
Sbjct: 334 IDCPKPVTKWSLLGLPSSCLEVIKY------LQYDQPSSIQAQAL---PAIMSGRDVIGV 384
Query: 222 ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-LK 280
+GS TI + + D ++ + GP + + ++E A ++ CKP LK
Sbjct: 385 AKTGSGKTIAFLLPLFRHIKD-----QRPLENLEGPIGVIMTPTRELAVQIHRECKPFLK 439
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV---SLLVVD 337
A G+ ++ + G+ I QI ++ E +V TP R++ L++ + V+ + + LV+D
Sbjct: 440 ALGLRAIAAYGGSPISEQIAEMKKGA-EIVVCTPGRMIDLLAANSGRVTNLRRTTYLVLD 498
Query: 338 RLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVA 394
D + G +++ + +P TV+F+ + P L I + L +V
Sbjct: 499 EADRMFDMGFEPQVMKIINNVRPDRQTVLFS-----ATFPKQMESLARKILQKPLEITVG 553
Query: 395 SQSAC---IIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVS 451
+S I Q V V + K + +++L Y + + + L V + NL+
Sbjct: 554 GRSVVAPEIDQQVEV-REESSKFNRLLEILGQTYNEDDEA---RTLIFVDRQEAADNLLF 609
Query: 452 TLKCKGY 458
L+ KGY
Sbjct: 610 NLRIKGY 616
>gi|145352838|ref|XP_001420742.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580977|gb|ABO99035.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 413
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP +L L ++E A +++ C + G+ +V L+ GA Q+ LR+ P+ ++TP
Sbjct: 75 GPMMLALAPTRELATQIQEECMKFGSSCGVGSVCLYGGAPKGRQLQQLRN-RPQICIATP 133
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCLTYT 371
RL L+ + +D+S + +V+D D + IR+ + P T+ F
Sbjct: 134 GRLNDLLESRMVDMSSATYVVLDEADRMLDMGFEPQIRKILQHVPVDRQTLFFTATWPKA 193
Query: 372 SVPAVQNLLLGSI--NRLSLNQSVASQSACIIQSVNVCASDEEK 413
+ +L I N +Q VA++ I Q++ VC+ E++
Sbjct: 194 VIRVATAILTNPIQVNIGDTDQLVANKD--ITQTIEVCSGFEKE 235
>gi|167816420|ref|ZP_02448100.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 91]
Length = 223
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 10 PGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 65
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 66 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATL 125
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ N LL R+ + Q + S+S I Q+V+ + K ++LDH D
Sbjct: 126 D-GKIGSLTNRLLKDPERIEITQKIESRS-NIAQTVHYVDDRDHK----DRLLDHLLRD 178
>gi|346322147|gb|EGX91746.1| DEAD/DEAH box RNA helicase [Cordyceps militaris CM01]
Length = 1216
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 103/224 (45%), Gaps = 21/224 (9%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LK GI V + GA I QI L+ E +V TP
Sbjct: 653 GPIGLIMSPTRELATQIHRDCKPFLKMMGIRAVCAYGGAPIREQIAELKRGA-EIIVCTP 711
Query: 315 ERLLKLVSL---KAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ + ++ V+ +V+D D + G +++ + +P T++F+
Sbjct: 712 GRMIDLLAANQGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIFANMRPDKQTILFS--- 768
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHAYG 426
++P + + L + + +V +S A I+ + + K + +++L Y
Sbjct: 769 --ATMPRIIDSLTKKVLNSPVEITVGGRSVVAKEIEQIVEVRDENTKFHRVLELLGELY- 825
Query: 427 DHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+ E + L V + K +L+ L KGY SI G + I
Sbjct: 826 --ENDEDARTLIFVERQEKADDLLKELMVKGYPCMSIHGGKDQI 867
>gi|307275492|ref|ZP_07556634.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
gi|306507880|gb|EFM77008.1| DEAD/DEAH box helicase [Enterococcus faecalis TX2134]
Length = 430
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 259 LLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
LL + SQE A ++ R+ KPL+ + +L GA + QI L+ PE L+ TP
Sbjct: 70 LLIIAPSQELAMQIAEVARTWAKPLQ---LTVQTLIGGANVSRQIDKLKK-RPEVLIGTP 125
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
R+L+L+ K + + +V+D +D L + + LSL +Q ++ P + +VF
Sbjct: 126 GRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVF 177
>gi|422698165|ref|ZP_16756085.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
gi|315173277|gb|EFU17294.1| DEAD/DEAH box helicase [Enterococcus faecalis TX1346]
Length = 433
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 259 LLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
LL + SQE A ++ R+ KPL+ + +L GA + QI L+ PE L+ TP
Sbjct: 70 LLIIAPSQELALQIAEVARTWAKPLQ---LTVQTLIGGANVSRQIDKLKK-RPEVLIGTP 125
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
R+L+L+ K + + +V+D +D L + + LSL +Q ++ P + +VF
Sbjct: 126 GRILELMKNKKVKAQLLKTIVMDEVDQLFQEEELSLTKQILTHTPTEYQLVF 177
>gi|353238668|emb|CCA70607.1| related to RNA helicase [Piriformospora indica DSM 11827]
Length = 1042
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 109/259 (42%), Gaps = 27/259 (10%)
Query: 216 SAKDILET--SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
S +DI+ +GS TI + + D ++ EG P L + ++E A ++
Sbjct: 416 SGRDIIGVAKTGSGKTIAFLLPLFRQIKDQRPLEQMEG-----PMALVMTPTRELAVQIH 470
Query: 274 SVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLV---SLKAIDVS 329
CKP LKA + V + G+ I QI L+ E +V TP R++ L+ S + ++
Sbjct: 471 RECKPFLKALNLRAVCAYGGSPIKDQIAELKKGA-EIIVCTPGRMIDLLTANSGRVTNLK 529
Query: 330 GVSLLVVDRLD---SLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINR 386
V+ LV+D D + + I +I TV+F+ + P + L I
Sbjct: 530 RVTYLVLDEADRMFDMGFEPQVMKIVNNIRPDRQTVLFS-----ATFPKQMDSLARKILN 584
Query: 387 LSLNQSVASQSAC---IIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKD 443
L +V +S I Q V V D K + +Q+L D ++ ++L V +
Sbjct: 585 KPLEITVGGRSVVAPEITQLVEVRTED-TKFNRLLQILGEQMNDDQNA---RILVFVDRQ 640
Query: 444 SKFQNLVSTLKCKGYSIST 462
NL+ L K Y T
Sbjct: 641 EHADNLMKDLLKKNYMTGT 659
>gi|302502646|ref|XP_003013284.1| hypothetical protein ARB_00469 [Arthroderma benhamiae CBS 112371]
gi|291176847|gb|EFE32644.1| hypothetical protein ARB_00469 [Arthroderma benhamiae CBS 112371]
Length = 1181
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 15/232 (6%)
Query: 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRS 304
R ++ + GP L + ++E A ++ C+P LKA + V + GA I QI L+
Sbjct: 588 RDQRPLENMEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELKR 647
Query: 305 CEPEFLVSTPERLLKLV---SLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGK 358
E +V TP R++ L+ S + ++ V+ +V+D D + + I +I
Sbjct: 648 GA-EIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRPN 706
Query: 359 PHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGI 418
TV+F+ + L I + +SV + I Q V V +D+ K ++ +
Sbjct: 707 RQTVLFSATFPRNMEALARKTLSKPIEIIVGGRSVVAPE--ITQIVEV-RNDDAKFVRLL 763
Query: 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
++L + Y D +E + L V + L+ L KGY SI G + I
Sbjct: 764 ELLGNLYSDD-ENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQI 814
>gi|296807861|ref|XP_002844269.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Arthroderma
otae CBS 113480]
gi|238843752|gb|EEQ33414.1| pre-mRNA-processing ATP-dependent RNA helicase prp5 [Arthroderma
otae CBS 113480]
Length = 1183
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 15/222 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ C+P LKA + V + GA I QI L+ E +V TP
Sbjct: 623 GPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIIVCTP 681
Query: 315 ERLLKLV---SLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGKPHTVVFNDCL 368
R++ L+ S + ++ V+ +V+D D + + I +I TV+F+
Sbjct: 682 GRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRPNRQTVLFSATF 741
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L + + +SV + I Q V V +D+ K ++ +++L + Y D
Sbjct: 742 PRNMEALARKTLSKPVEIIVGGRSVVAPE--ITQIVEV-RNDDAKFVRLLELLGNLYSDD 798
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+E + L V + L+ L KGY SI G + I
Sbjct: 799 -ENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQI 839
>gi|262278447|ref|ZP_06056232.1| ATP-dependent RNA helicase rhlB [Acinetobacter calcoaceticus
RUH2202]
gi|262258798|gb|EEY77531.1| ATP-dependent RNA helicase rhlB [Acinetobacter calcoaceticus
RUH2202]
Length = 383
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 23/224 (10%)
Query: 254 FTG-PFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
F G P L L ++E A ++ S K L F +H V+L G D Q L + + +V
Sbjct: 75 FRGEPRALILAPTRELALQIESDAKLLTKFSDLHVVTLLGGVDFDKQKKQLDANFVDIMV 134
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFND 366
+TP RL+ V K + + + LV+D D L + +++ + P T++F+
Sbjct: 135 ATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEERQTLMFSA 194
Query: 367 CLTYTSVPAVQNLLLGSIN-RLSLNQSVASQSACIIQSVNVCA-SDEEKILKGIQVLDHA 424
+Y + + L I + Q + + Q V V A D+ ++L+ I
Sbjct: 195 TFSYDVLNLARQWLFEPITVEIEPEQKTNND---VEQRVYVVAKQDKYRLLQDI------ 245
Query: 425 YGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
EP+ KV+ + + + L LK GY + S I
Sbjct: 246 ----LREEPIDKVMIFANRRDQVRRLYDHLKRDGYRVGMLSGEI 285
>gi|302665308|ref|XP_003024266.1| hypothetical protein TRV_01617 [Trichophyton verrucosum HKI 0517]
gi|291188313|gb|EFE43655.1| hypothetical protein TRV_01617 [Trichophyton verrucosum HKI 0517]
Length = 1171
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 103/232 (44%), Gaps = 15/232 (6%)
Query: 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRS 304
R ++ + GP L + ++E A ++ C+P LKA + V + GA I QI L+
Sbjct: 601 RDQRPLENMEGPISLIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELKR 660
Query: 305 CEPEFLVSTPERLLKLV---SLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGK 358
E +V TP R++ L+ S + ++ V+ +V+D D + + I +I
Sbjct: 661 GA-EIIVCTPGRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRPN 719
Query: 359 PHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGI 418
TV+F+ + L I + +SV + I Q V V +D+ K ++ +
Sbjct: 720 RQTVLFSATFPRNMEALARKTLSKPIEIIVGGRSVVAPE--ITQIVEV-RNDDAKFVRLL 776
Query: 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
++L + Y D +E + L V + L+ L KGY SI G + I
Sbjct: 777 ELLGNLYSDD-ENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQI 827
>gi|377809931|ref|YP_005005152.1| DEAD/DEAH box helicase [Pediococcus claussenii ATCC BAA-344]
gi|361056672|gb|AEV95476.1| DEAD/DEAH box helicase family protein [Pediococcus claussenii ATCC
BAA-344]
Length = 440
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G LL + SQE A + V + + S+ GA + QI L++ +PE +V TP
Sbjct: 61 GTQLLIIAPSQELAIQTTEVVREWGTLIKLKVTSVTGGANMQRQIERLKT-KPEIVVGTP 119
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTL 348
R+ ++ K + VS +S LV+D D L GDTL
Sbjct: 120 GRIKTMIDEKRLKVSEISALVIDEADQLLTGDTL 153
>gi|359451692|ref|ZP_09241090.1| probable DEAD-box ATP-dependent RNA helicase SERP1688
[Pseudoalteromonas sp. BSi20480]
gi|358042514|dbj|GAA77339.1| probable DEAD-box ATP-dependent RNA helicase SERP1688
[Pseudoalteromonas sp. BSi20480]
Length = 440
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 108/229 (47%), Gaps = 20/229 (8%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETS--GSSSTIVQIAWIVATAADS 243
+E + H G+ Q P + + + + DI S GS T+ A+++
Sbjct: 12 LETQLAHQGITQ--PTDIQAHAVP---TALAGHDIFAQSKTGSGKTL---AFLLPAVQRV 63
Query: 244 IARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGL 302
I +K S P +L + ++E A +V + + L A I V + G + QI L
Sbjct: 64 IKQK---ALSKRDPRVLIVAPTRELATQVFTQLRLLIAGTAIKAVKVLGGENFNDQIKAL 120
Query: 303 RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGK- 358
R+ +P+F+V+TP RL +S +++ +SG+ LL+ D D L + L LI + +
Sbjct: 121 RN-DPQFVVATPGRLADHISKRSLQLSGLELLIFDEADRILDLGFTEQLKLINDEANHRL 179
Query: 359 PHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC 407
T++F+ L + V A+ LL +++L+ + Q + I Q++ +
Sbjct: 180 RQTLLFSATLDHAQVDALSRNLLKKPKQITLS-AANEQHSDITQTLYLA 227
>gi|302696669|ref|XP_003038013.1| hypothetical protein SCHCODRAFT_43190 [Schizophyllum commune H4-8]
gi|300111710|gb|EFJ03111.1| hypothetical protein SCHCODRAFT_43190, partial [Schizophyllum
commune H4-8]
Length = 674
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LK + V + G+ I QI L+ E +V TP
Sbjct: 153 GPIALVMTPTRELATQIHRECKPFLKVLNLRAVCAYGGSPIKDQIADLKKGA-EIIVCTP 211
Query: 315 ERLLKLV---SLKAIDVSGVSLLVVDRLDSL----SKGDTLSLIRQSISGKPHTVVFNDC 367
R++ L+ S + ++ V+ +V+D D + + + +I +I TV+F+
Sbjct: 212 GRMIDLLTANSGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKII-NNIRPDRQTVLFS-- 268
Query: 368 LTYTSVPAVQNLLLGSINRLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHAY 425
+ P + L I + L +V +S A I+ + ++ K ++ +++L
Sbjct: 269 ---ATFPKQMDSLARKILKKPLEITVGGRSVVAAEIEQIVEVREEDTKFMRLLEIL---- 321
Query: 426 GDHFHSEP-LKVLYIVGKDSKFQNLVSTLKCKGY 458
G ++ +P + L V + NL+ L KGY
Sbjct: 322 GQMYNEDPDCRTLIFVDRHEAADNLLRELMRKGY 355
>gi|291456631|ref|ZP_06596021.1| putative ATP-dependent RNA helicase [Bifidobacterium breve DSM
20213 = JCM 1192]
gi|291381908|gb|EFE89426.1| putative ATP-dependent RNA helicase [Bifidobacterium breve DSM
20213 = JCM 1192]
Length = 675
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 6/129 (4%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A ++ V PL AFG++T +++ G HQ+ L++ + +V+ P
Sbjct: 126 PRGLVLAPTRELANQINDVLMPLAHAFGMNTTTIYGGVKYIHQVRDLKAGA-DIVVACPG 184
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR---QSISGKPHTVVFNDCLTYTS 372
RL L+ KA+ +S V ++V+D D ++ L ++ + IS ++F+ L +
Sbjct: 185 RLEDLLRQKALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISPNAQHMLFSATLDH-G 243
Query: 373 VPAVQNLLL 381
V V N L
Sbjct: 244 VDEVVNTFL 252
>gi|384197101|ref|YP_005582845.1| putative cold-shock DEAD-box protein A [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|333110931|gb|AEF27947.1| putative cold-shock DEAD-box protein A [Bifidobacterium breve
ACS-071-V-Sch8b]
Length = 675
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 6/129 (4%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A ++ V PL AFG++T +++ G HQ+ L++ + +V+ P
Sbjct: 126 PRGLVLAPTRELANQINDVLMPLAHAFGMNTTTIYGGVKYIHQVRDLKAGA-DIVVACPG 184
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR---QSISGKPHTVVFNDCLTYTS 372
RL L+ KA+ +S V ++V+D D ++ L ++ + IS ++F+ L +
Sbjct: 185 RLEDLLRQKALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISPNAQHMLFSATLDH-G 243
Query: 373 VPAVQNLLL 381
V V N L
Sbjct: 244 VDEVVNTFL 252
>gi|219114457|ref|XP_002176399.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402645|gb|EEC42635.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 575
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 28/221 (12%)
Query: 254 FTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVS 312
FT P LL L ++E + ++ + + GI +V + GA+ QI L+ E +++
Sbjct: 210 FTKPILLVLAPTRELSVQILEEAQKFGRPLGIRSVCCYGGASKHPQIAALQRGV-ECVIA 268
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP----HTVVFN--- 365
TP RL L+ ++ D+S V LV+D D + IR I P T++F+
Sbjct: 269 TPGRLNDLIEMRKADLSKVQYLVLDEADRMLDMGFEPQIRSIILNIPPENRQTLLFSATW 328
Query: 366 ----DCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVL 421
L + + + +G +N L N+ IQ V S+ EK+ K Q+L
Sbjct: 329 PKEIQALAHDFLKNPIQINVGEVNALVANKD--------IQQTIVMCSESEKLDKLEQIL 380
Query: 422 DHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIST 462
D H K++ V K +L + L G+++ +
Sbjct: 381 R----DLMHG---KIIVFVAKKISCNDLANRLWEDGFAVDS 414
>gi|339479083|gb|ABE95547.1| ATP-dependent RNA helicase [Bifidobacterium breve UCC2003]
Length = 675
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 67/129 (51%), Gaps = 6/129 (4%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A ++ V PL AFG++T +++ G HQ+ L++ + +V+ P
Sbjct: 126 PRGLVLAPTRELANQINDVLMPLAHAFGMNTTTIYGGVKYIHQVRDLKAGT-DIVVACPG 184
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR---QSISGKPHTVVFNDCLTYTS 372
RL L+ KA+ +S V ++V+D D ++ L ++ + IS ++F+ L +
Sbjct: 185 RLEDLLRQKALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISPNAQHMLFSATLDH-G 243
Query: 373 VPAVQNLLL 381
V V N L
Sbjct: 244 VDEVVNTFL 252
>gi|167894911|ref|ZP_02482313.1| ATP-dependent RNA helicase [Burkholderia pseudomallei 7894]
Length = 483
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 138 PGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 193
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 194 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATL 253
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ N LL R+ + Q + S+S I Q+V+ + K ++LDH D
Sbjct: 254 D-GKIGSLTNRLLKDPERIEITQKIESRS-NIAQTVHYVDDRDHK----DRLLDHLLRD 306
>gi|167619557|ref|ZP_02388188.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis Bt4]
Length = 454
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 140 PGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 195
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 196 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPASRQTMLFSATL 255
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ N LL R+ + Q + S+S I Q+V+ + K ++LDH D
Sbjct: 256 D-GKIGSLTNRLLKDPERIEITQKIESRS-NIAQTVHYVDDRDHK----DRLLDHLLRD 308
>gi|417879361|ref|ZP_12523933.1| ATP-dependent RNA helicase RhlB, partial [Acinetobacter baumannii
ABNIH3]
gi|342228819|gb|EGT93696.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ABNIH3]
Length = 373
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 23/224 (10%)
Query: 254 FTG-PFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
F G P L L ++E A ++ S K L F +H V+L G D Q L + + +V
Sbjct: 75 FRGEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLDANFVDIMV 134
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFND 366
+TP RL+ V K + + + LV+D D L + +++ + P T++F+
Sbjct: 135 ATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQRQTLMFSA 194
Query: 367 CLTYTSVPAVQNLLLGSIN-RLSLNQSVASQSACIIQSVNVCA-SDEEKILKGIQVLDHA 424
+Y + + L + + Q + + Q V V A D+ ++L+ I
Sbjct: 195 TFSYDVLNLARQWLFEPVTVEIEPEQKTNND---VEQRVYVVAKQDKYRLLQDI------ 245
Query: 425 YGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
EP+ KV+ + + + L LK GY + S I
Sbjct: 246 ----LREEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEI 285
>gi|260550927|ref|ZP_05825133.1| II DNA and RNA helicase [Acinetobacter sp. RUH2624]
gi|424054991|ref|ZP_17792514.1| hypothetical protein W9I_01390 [Acinetobacter nosocomialis Ab22222]
gi|425741916|ref|ZP_18860046.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-487]
gi|260406054|gb|EEW99540.1| II DNA and RNA helicase [Acinetobacter sp. RUH2624]
gi|407438916|gb|EKF45458.1| hypothetical protein W9I_01390 [Acinetobacter nosocomialis Ab22222]
gi|425489651|gb|EKU55954.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-487]
Length = 383
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 24/244 (9%)
Query: 234 AWIVATAADSIARKEKEGFSFTG-PFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHP 291
A++++ D + KE F G P L L ++E A ++ S K L F +H V+L
Sbjct: 56 AFLISVINDLLNNPVKEQ-RFRGEPRALILAPTRELALQIESDAKFLTKFSNLHLVTLLG 114
Query: 292 GAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLI 351
G D Q L + + +V+TP RL+ V K + + + LV+D D L + +
Sbjct: 115 GVDFDKQKKQLDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSV 174
Query: 352 RQSISGKP-----HTVVFNDCLTYTSVPAVQNLLLGSIN-RLSLNQSVASQSACIIQSVN 405
++ + P T++F+ +Y + + L + + Q + + Q V
Sbjct: 175 KRIVRYSPRKEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNND---VEQRVY 231
Query: 406 VCA-SDEEKILKGIQVLDHAYGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTG 463
V A D+ ++L+ I EP+ KV+ + + + L LK GY +
Sbjct: 232 VVAKQDKYRLLQDI----------LREEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGML 281
Query: 464 SNCI 467
S I
Sbjct: 282 SGEI 285
>gi|400601996|gb|EJP69621.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 1195
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 119/266 (44%), Gaps = 28/266 (10%)
Query: 216 SAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
S +D++ +GS T+ + + D KE EG P L + ++E A ++
Sbjct: 592 SGRDVIGVAKTGSGKTMAFLLPMFRHIKDQPPLKESEG-----PVGLIMTPTRELATQIH 646
Query: 274 SVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL---KAIDVS 329
CKP LK G+ V + GA I QI L+ E +V TP R++ L++ + ++
Sbjct: 647 RDCKPFLKMMGMRAVCAYGGAPIRDQIAELKRGA-EIIVCTPGRMIDLLAANQGRVTNLR 705
Query: 330 GVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCLTYTSVPAVQNLLLGSINR 386
V+ +V+D D + G +++ + +P T++F+ ++P + + L + +
Sbjct: 706 RVTYVVLDEADRMFDMGFEPQVMKIFANMRPDKQTILFS-----ATMPRIIDSLTKKVLK 760
Query: 387 LSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDS 444
+ +V +S A I+ + + K + +++L Y E + L V +
Sbjct: 761 SPVEITVGGRSVVAKEIEQIVEVRDENTKFHRVLELLGELYD---RDEDARSLIFVERQE 817
Query: 445 KFQNLVSTLKCKGY---SISTGSNCI 467
K +L+ L KGY SI G + +
Sbjct: 818 KADDLLKELMVKGYPCMSIHGGKDQV 843
>gi|420157279|ref|ZP_14664117.1| DEAD/DEAH box helicase [Clostridium sp. MSTE9]
gi|394756572|gb|EJF39652.1| DEAD/DEAH box helicase [Clostridium sp. MSTE9]
Length = 414
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
+ L ++E A + V K + + GI ++L+ G I QI L+ C P+ +V+TP R+
Sbjct: 75 VILCPTRELAVQTTGVLKQMATYKQGIRVLALYGGEPIQRQIMALKRC-PQIIVATPGRM 133
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDS-LSKG--DTLSLIRQSISGKPHTVVFNDCLT 369
+ + + +SGV+ +V+D D L G + + I Q + + TV+F+ L+
Sbjct: 134 MDHMRRRTTRLSGVNCIVLDEADQMLDMGFREDIHTILQCVPTERQTVLFSATLS 188
>gi|301510878|ref|ZP_07236115.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AB058]
Length = 344
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 19/222 (8%)
Query: 254 FTG-PFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
F G P L L ++E A ++ S K L F +H V+L G D Q L + + +V
Sbjct: 75 FRGEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLDANFVDIMV 134
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFND 366
+TP RL+ V K + + + LV+D D L + +++ + P T++F+
Sbjct: 135 ATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQRQTLMFSA 194
Query: 367 CLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYG 426
+Y + + L + + + + + + V D+ ++L+ I
Sbjct: 195 TFSYDVLNLARQWLFEPVT-VEIEPEQKTNNDVEQRVYVVAKQDKYRLLQDI-------- 245
Query: 427 DHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
EP+ KV+ + + + L LK GY + S I
Sbjct: 246 --LREEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEI 285
>gi|445430870|ref|ZP_21438629.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC021]
gi|444760498|gb|ELW84948.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC021]
Length = 383
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 103/244 (42%), Gaps = 24/244 (9%)
Query: 234 AWIVATAADSIARKEKEGFSFTG-PFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHP 291
A++++ D + KE F G P L L ++E A ++ S K L F +H V+L
Sbjct: 56 AFLISVINDLLNNPVKEQ-RFRGEPRALILAPTRELALQIESDAKFLTKFSNLHLVTLLG 114
Query: 292 GAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLI 351
G D Q L + + +V+TP RL+ V K + + + LV+D D L + +
Sbjct: 115 GVDFDKQKKQLDANFVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSV 174
Query: 352 RQSISGKP-----HTVVFNDCLTYTSVPAVQNLLLGSIN-RLSLNQSVASQSACIIQSVN 405
++ + P T++F+ +Y + + L + + Q + + Q V
Sbjct: 175 KRIVRYSPRKEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNND---VEQRVY 231
Query: 406 VCA-SDEEKILKGIQVLDHAYGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTG 463
V A D+ ++L+ I EP+ KV+ + + + L LK GY +
Sbjct: 232 VVAKQDKYRLLQDI----------LREEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGML 281
Query: 464 SNCI 467
S I
Sbjct: 282 SGEI 285
>gi|391865375|gb|EIT74659.1| RNA helicase [Aspergillus oryzae 3.042]
Length = 1186
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 27/228 (11%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 627 GPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGA-EIIVCTP 685
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 686 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILANVRPDKQTVLFSATF 745
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVA------SQSACIIQSVNVCASDEEKILKGIQVLD 422
+ ++ R +LN+ V S A I + S+++K ++ +++L
Sbjct: 746 PRN---------MEALARKTLNKPVEIVVGGRSVVAPEITQIVEVRSEDKKFIRLLELLG 796
Query: 423 HAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+ Y +E + L V + L+ L KGY SI G + I
Sbjct: 797 NLYSTD-ENEDARALIFVERQEGADTLLRELMRKGYPCMSIHGGKDQI 843
>gi|379727681|ref|YP_005319866.1| ATP-dependent RNA helicase YfmL [Melissococcus plutonius DAT561]
gi|376318584|dbj|BAL62371.1| ATP-dependent RNA helicase YfmL [Melissococcus plutonius DAT561]
Length = 387
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 4/129 (3%)
Query: 255 TGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVST 313
+G LL + SQE A ++ V + K + T L GA I Q+ L+ +PE +V T
Sbjct: 63 SGNQLLIIAPSQELAMQITRVAQDWGKLLQLKTQVLIGGANIHRQVERLKQ-KPEIVVGT 121
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI--SGKPHTVVFNDCLTYT 371
P R+ L+ +K I + + +V+D +D L + D L++ +Q + S + +VF
Sbjct: 122 PGRIFDLMKMKKIKSNSLRTIVIDEVDQLLQQDELTITKQLLNYSAFNYQIVFFSATAKN 181
Query: 372 SVPAVQNLL 380
+ +NL+
Sbjct: 182 VLTEAENLV 190
>gi|255319460|ref|ZP_05360674.1| ATP-dependent RNA helicase RhlB [Acinetobacter radioresistens SK82]
gi|262378516|ref|ZP_06071673.1| superfamily II DNA and RNA helicase [Acinetobacter radioresistens
SH164]
gi|421856913|ref|ZP_16289271.1| ATP-dependent RNA helicase RhlB [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
gi|255303400|gb|EET82603.1| ATP-dependent RNA helicase RhlB [Acinetobacter radioresistens SK82]
gi|262299801|gb|EEY87713.1| superfamily II DNA and RNA helicase [Acinetobacter radioresistens
SH164]
gi|403187660|dbj|GAB75472.1| ATP-dependent RNA helicase RhlB [Acinetobacter radioresistens DSM
6976 = NBRC 102413]
Length = 383
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 20/216 (9%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L ++E A ++ S K L F +H V+L G D Q L + +V+TP RL+
Sbjct: 82 LILAPTRELALQIESDAKELTKFTDLHLVTLLGGVDFDKQKKQLDQNFVDIIVATPGRLI 141
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFNDCLTYTSV 373
V K + + + LV+D D L + +++ + P T++F+ +Y +
Sbjct: 142 DFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRKEQRQTLMFSATFSYDVL 201
Query: 374 PAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCAS-DEEKILKGIQVLDHAYGDHFHSE 432
Q L + + +A + Q V + A+ D+ K+L+ I E
Sbjct: 202 NLAQQWLFEPVT--VEIEPEKKTNADVEQRVYMVANRDKYKLLQEI----------LRDE 249
Query: 433 PL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
P+ KV+ + + + L LK GY + S I
Sbjct: 250 PIEKVMIFANRRDQVRRLYDHLKKDGYKVVMLSGEI 285
>gi|167739208|ref|ZP_02411982.1| DEAD/DEAH box helicase [Burkholderia pseudomallei 14]
Length = 460
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 135 PGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 190
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 191 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATL 250
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ N LL R+ + Q + S+S I Q+V+ + K ++LDH D
Sbjct: 251 D-GKIGSLTNRLLKDPERIEITQKIESRS-NIAQTVHYVDDRDHK----DRLLDHLLRD 303
>gi|169781778|ref|XP_001825352.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Aspergillus
oryzae RIB40]
gi|91207409|sp|Q2U2J6.1|PRP5_ASPOR RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
gi|83774094|dbj|BAE64219.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1186
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 27/228 (11%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 627 GPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGA-EIIVCTP 685
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 686 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILANVRPDKQTVLFSATF 745
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVA------SQSACIIQSVNVCASDEEKILKGIQVLD 422
+ ++ R +LN+ V S A I + S+++K ++ +++L
Sbjct: 746 PRN---------MEALARKTLNKPVEIVVGGRSVVAPEITQIVEVRSEDKKFIRLLELLG 796
Query: 423 HAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+ Y +E + L V + L+ L KGY SI G + I
Sbjct: 797 NLYSTD-ENEDARALIFVERQEGADTLLRELMRKGYPCMSIHGGKDQI 843
>gi|352517851|ref|YP_004887168.1| putative RNA helicase [Tetragenococcus halophilus NBRC 12172]
gi|348601958|dbj|BAK95004.1| putative RNA helicase [Tetragenococcus halophilus NBRC 12172]
Length = 410
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL + SQE +V V +P + SL GA QI L+ +PE L+ TP RL
Sbjct: 69 LLIVTPSQELGVQVADVARPWALDLNLQVQSLIGGANKKRQIEKLKK-KPEVLIGTPGRL 127
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHT--VVFNDCLTYTSVPA 375
++L+ K + + + +++D D L + + + ++ I P+T F ++PA
Sbjct: 128 VELIKEKKLKAANIQTVILDEADQLLQKEAVGFMQTVIKSIPNTSQYAFFSATATKALPA 187
Query: 376 VQNLL 380
++ L
Sbjct: 188 IKQLF 192
>gi|126642301|ref|YP_001085285.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ATCC
17978]
Length = 358
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 23/224 (10%)
Query: 254 FTG-PFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
F G P L L ++E A ++ S K L F +H V+L G D Q L + + +V
Sbjct: 50 FRGEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLDANFVDIMV 109
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFND 366
+TP RL+ V K + + + LV+D D L + +++ + P T++F+
Sbjct: 110 ATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQRQTLMFSA 169
Query: 367 CLTYTSVPAVQNLLLGSIN-RLSLNQSVASQSACIIQSVNVCA-SDEEKILKGIQVLDHA 424
+Y + + L + + Q + + Q V V A D+ ++L+ I
Sbjct: 170 TFSYDVLNLARQWLFEPVTVEIEPEQKTNND---VEQRVYVVAKQDKYRLLQDI------ 220
Query: 425 YGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
EP+ KV+ + + + L LK GY + S I
Sbjct: 221 ----LREEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEI 260
>gi|421464012|ref|ZP_15912705.1| DEAD/DEAH box helicase [Acinetobacter radioresistens WC-A-157]
gi|400206386|gb|EJO37363.1| DEAD/DEAH box helicase [Acinetobacter radioresistens WC-A-157]
Length = 383
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 20/216 (9%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L ++E A ++ S K L F +H V+L G D Q L + +V+TP RL+
Sbjct: 82 LILAPTRELALQIESDAKELTKFTDLHLVTLLGGVDFDKQKKQLDQNFVDIIVATPGRLI 141
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFNDCLTYTSV 373
V K + + + LV+D D L + +++ + P T++F+ +Y +
Sbjct: 142 DFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRKEQRQTLMFSATFSYDVL 201
Query: 374 PAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCAS-DEEKILKGIQVLDHAYGDHFHSE 432
Q L + + +A + Q V + A+ D+ K+L+ I E
Sbjct: 202 NLAQQWLFEPVT--VEIEPEKKTNADVEQRVYMVANRDKYKLLQEI----------LRDE 249
Query: 433 PL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
P+ KV+ + + + L LK GY + S I
Sbjct: 250 PIEKVMIFANRRDQVRRLYDHLKKDGYKVVMLSGEI 285
>gi|255067653|ref|ZP_05319508.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
29256]
gi|255048127|gb|EET43591.1| putative ATP-dependent RNA helicase RhlE [Neisseria sicca ATCC
29256]
Length = 457
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 21/173 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+R +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVRSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
GA+ +Q L S + +V+TP RL+ L+ +D + + +L++D D +
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRM 162
>gi|409049919|gb|EKM59396.1| hypothetical protein PHACADRAFT_249858 [Phanerochaete carnosa
HHB-10118-sp]
Length = 851
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 18/214 (8%)
Query: 254 FTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVS 312
GP + + ++E A ++ CKP L+ + V + G+ I QI ++ E +V
Sbjct: 264 MEGPVAVVMTPTRELAVQIHRECKPFLRVLNLRAVCAYGGSPIKDQIAEMKKG-AEIIVC 322
Query: 313 TPERLLKLV---SLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFND 366
TP R++ L+ S + ++ V+ LV+ DR+ + + I +I TV+F+
Sbjct: 323 TPGRMIDLLTANSGRVTNLKRVTYLVLDEADRMFDMGFEPQVMKIVNNIRPDRQTVLFS- 381
Query: 367 CLTYTSVPAVQNLLLGSINRLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHA 424
+ P + L I R L +V +S A I+ + ++ K + +++L
Sbjct: 382 ----ATFPKQMDSLARKILRKPLEITVGGRSVVAAEIEQIVEVRDEDTKFNRLLEILGQT 437
Query: 425 YGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
Y + S + L V + NL+ L KGY
Sbjct: 438 YNEDPES---RTLIFVDRQEAADNLLRELMRKGY 468
>gi|389747348|gb|EIM88527.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 688
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 109/254 (42%), Gaps = 25/254 (9%)
Query: 216 SAKDILET--SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
S +D++ +GS T+ + + D ++ EG P + + ++E A ++
Sbjct: 133 SGRDVIGVAKTGSGKTVAFLLPVFRHIKDQRPLEQMEG-----PIAIIMTPTRELAVQIH 187
Query: 274 SVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLV---SLKAIDVS 329
CKP LK + V + G+ I QI ++ E +V TP R++ L+ S + ++
Sbjct: 188 RDCKPFLKVLNLRAVCAYGGSPIKDQIADMKKGA-EIIVCTPGRMIDLLTANSGRVTNLK 246
Query: 330 GVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINR 386
V+ LV+ DR+ + + I +I T++F+ + P + L I R
Sbjct: 247 RVTYLVLDEADRMFDMGFEPQVMKIVNNIRPDRQTLLFS-----ATFPKQMDSLARKILR 301
Query: 387 LSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDS 444
L +V +S A I + +E K + ++VL Y + + + L V +
Sbjct: 302 KPLEITVGGRSVVAAEIDQIVEVRPEETKFNRLLEVLGQMYNEDPEA---RTLIFVDRQE 358
Query: 445 KFQNLVSTLKCKGY 458
NL+ L KGY
Sbjct: 359 AADNLLRELMRKGY 372
>gi|327292871|ref|XP_003231133.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Trichophyton
rubrum CBS 118892]
gi|326466763|gb|EGD92216.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Trichophyton
rubrum CBS 118892]
Length = 1180
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 15/222 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP + + ++E A ++ C+P LKA + V + GA I QI L+ E +V TP
Sbjct: 620 GPISVIMTPTRELATQIHRECRPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIIVCTP 678
Query: 315 ERLLKLV---SLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGKPHTVVFNDCL 368
R++ L+ S + ++ V+ +V+D D + + I +I TV+F+
Sbjct: 679 GRMIDLLTANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNIRPNRQTVLFSATF 738
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V V +D+ K ++ +++L + Y D
Sbjct: 739 PRNMEALARKTLSKPIEIIVGGRSVVAPE--ITQIVEV-RNDDAKFVRLLELLGNLYSDD 795
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+E + L V + L+ L KGY SI G + I
Sbjct: 796 -ENEDARTLVFVDRQEAADRLLRDLMRKGYPCMSIHGGKDQI 836
>gi|150019837|ref|YP_001312091.1| DEAD/DEAH box helicase [Clostridium beijerinckii NCIMB 8052]
gi|149906302|gb|ABR37135.1| DEAD/DEAH box helicase domain protein [Clostridium beijerinckii
NCIMB 8052]
Length = 525
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 9/151 (5%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L ++E A +V + L + I T++++ G +ID QI LR + + +V TP R+L
Sbjct: 75 LILAPTRELAVQVNEEIQRLSKYEKIVTLAVYGGDSIDRQIRALRKGDVDIVVGTPGRIL 134
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCLTYTSVPA 375
LV K + + + LV+D D + + I++ +S P T++F+ +
Sbjct: 135 DLVKRKCLHLESIEFLVLDEADEMLNMGFIDDIQEILSHTPSERQTLLFSATMPDPIAKL 194
Query: 376 VQNLL-----LGSINRLSLNQSVASQSACII 401
+ + L SI R SL S QS +I
Sbjct: 195 AKKYMKPDAKLVSIKRSSLTVSKIEQSYFMI 225
>gi|340362171|ref|ZP_08684568.1| ATP-dependent RNA helicase RhlE [Neisseria macacae ATCC 33926]
gi|339887772|gb|EGQ77294.1| ATP-dependent RNA helicase RhlE [Neisseria macacae ATCC 33926]
Length = 457
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 21/173 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+R +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVRSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
GA+ +Q L S + +V+TP RL+ L+ +D + + +L++D D +
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRM 162
>gi|323143379|ref|ZP_08078066.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066]
gi|322416845|gb|EFY07492.1| cold-shock DEAD-box protein A [Succinatimonas hippei YIT 12066]
Length = 683
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 12/119 (10%)
Query: 258 FLLFLVSSQEKAAKVRSVCKPLKAFG-----IHTVSLHPGAAIDHQITGLRSCEPEFLVS 312
F L L ++E A +V + +AF H V ++ GA+ D+QI +R + +V+
Sbjct: 123 FALVLEPTRELALQV---AESFQAFARHIEDFHVVPIYGGASYDNQIRSIRHGA-QVVVA 178
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKG---DTLSLIRQSISGKPHTVVFNDCL 368
TP RL+ L+ ID+S VS +V+D D + + D + I + HT +F+ +
Sbjct: 179 TPGRLIDLIERGKIDLSSVSYMVIDEADEMLRMGFIDDVDWILNHTPSERHTALFSATM 237
>gi|319638186|ref|ZP_07992949.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
gi|317400459|gb|EFV81117.1| ATP-dependent RNA helicase [Neisseria mucosa C102]
Length = 469
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 21/173 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+R +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVRSEGYESPTP--IQAQAIPF---ALDGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
GA+ +Q L S + +V+TP RL+ L+ +D + + +L++D D +
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRM 162
>gi|291225668|ref|XP_002732809.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length = 795
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEP--EFLVS 312
GP L ++E + ++ CK KA+ IHTV + G + Q ++C+ E LV+
Sbjct: 330 GPIGLICAPTRELSQQIHQECKKFGKAYNIHTVCAYGGGNMWEQT---KACQAGCEILVA 386
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
TP RL+ LV KA ++ V+ LV+D D +
Sbjct: 387 TPGRLIDLVKRKATNLERVTFLVLDEADRM 416
>gi|311748030|ref|ZP_07721815.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
gi|126575012|gb|EAZ79370.1| ATP-dependent RNA helicase RhlE [Algoriphagus sp. PR1]
Length = 379
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 13/138 (9%)
Query: 208 IEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS 265
IE + + KDIL +GS T I I+ + + +KE S P L+ LV +
Sbjct: 31 IEAIPAFLNRKDILGIAPTGSGKTASYILPIL-----QLLQGKKEHRSRNIPVLV-LVPT 84
Query: 266 QEKAAKVRSVCKPLKAF---GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVS 322
+E AA+V V F I T+++ G +I+ Q+ L + LV+TP RLL L+S
Sbjct: 85 RELAAQVAQVADNFSRFLERRIKTLAVFGGVSINPQMMKLNGTD--ILVATPGRLLDLLS 142
Query: 323 LKAIDVSGVSLLVVDRLD 340
A+ +S V +LV+D +D
Sbjct: 143 KNALSISDVEILVLDEMD 160
>gi|167837073|ref|ZP_02463956.1| ATP-dependent RNA helicase [Burkholderia thailandensis MSMB43]
Length = 475
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 134 PGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 189
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 190 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIDTIVAATPASRQTMLFSATL 249
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ N LL R+ + Q + S+S I Q+V+ + K ++LDH D
Sbjct: 250 D-GKIGSLTNRLLKDPERIEITQKIESRS-NIAQTVHYVDDRDHK----DRLLDHLLRD 302
>gi|238498592|ref|XP_002380531.1| DEAD/DEAH box RNA helicase [Aspergillus flavus NRRL3357]
gi|220693805|gb|EED50150.1| DEAD/DEAH box RNA helicase [Aspergillus flavus NRRL3357]
Length = 1201
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 27/228 (11%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 642 GPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGA-EIIVCTP 700
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 701 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILANVRPDKQTVLFSATF 760
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVA------SQSACIIQSVNVCASDEEKILKGIQVLD 422
+ ++ R +LN+ V S A I + S+++K ++ +++L
Sbjct: 761 PRN---------MEALARKTLNKPVEIVVGGRSVVAPEITQIVEVRSEDKKFIRLLELLG 811
Query: 423 HAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+ Y +E + L V + L+ L KGY SI G + I
Sbjct: 812 NLYSTD-ENEDARALIFVERQEGADTLLRELMRKGYPCMSIHGGKDQI 858
>gi|349609420|ref|ZP_08888815.1| hypothetical protein HMPREF1028_00790 [Neisseria sp. GT4A_CT1]
gi|348611981|gb|EGY61609.1| hypothetical protein HMPREF1028_00790 [Neisseria sp. GT4A_CT1]
Length = 457
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 21/173 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+R +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVRSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
GA+ +Q L S + +V+TP RL+ L+ +D + + +L++D D +
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRM 162
>gi|375144587|ref|YP_005007028.1| DEAD/DEAH box helicase [Niastella koreensis GR20-10]
gi|361058633|gb|AEV97624.1| DEAD/DEAH box helicase domain protein [Niastella koreensis GR20-10]
Length = 380
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 13/131 (9%)
Query: 217 AKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS 274
KDIL S GS T + I+ + +K++ +L +V ++E A +V
Sbjct: 38 GKDILGISKTGSGKTAGYVLPILELCQRRVEKKDRH------VRVLVIVPTRELAIQVSD 91
Query: 275 VCKPLKAF---GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331
VCK A I T++++ G +I+ Q+ L E L++TP RLL L+ KA+ +S V
Sbjct: 92 VCKTFCAHLPNKIKTMAVYGGVSINPQMMALHGIE--ILIATPGRLLDLIDHKAVHLSQV 149
Query: 332 SLLVVDRLDSL 342
+LV+D D +
Sbjct: 150 EILVLDEADKM 160
>gi|225682788|gb|EEH21072.1| pre-mRNA-processing ATP-dependent RNA helicase prp5
[Paracoccidioides brasiliensis Pb03]
Length = 1203
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 113/270 (41%), Gaps = 22/270 (8%)
Query: 198 DNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQIAWIVATAADSIARKEKEGFSFT 255
+NP + S I S +D++ +GS TI + + D + EG
Sbjct: 599 ENPTSIQSQAI---PAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLENMEG---- 651
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
P L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 652 -PIGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIIVCTP 709
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLD---SLSKGDTLSLIRQSISGKPHTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + + I ++ + TV+F+
Sbjct: 710 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNVRPQRQTVLFSATF 769
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L + + +SV + I Q V V D K ++ + +L Y D
Sbjct: 770 PRNMEALARKTLTKPVEIVVGGRSVVAPE--ITQIVEVRNED-TKFVRLLALLGDLYADD 826
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
++E + L V + L+ L KGY
Sbjct: 827 -NNEDARTLIFVDRQEAADGLLRDLMHKGY 855
>gi|417943104|ref|ZP_12586359.1| Putative ATP-dependent RNA helicase [Bifidobacterium breve CECT
7263]
gi|376165915|gb|EHS84843.1| Putative ATP-dependent RNA helicase [Bifidobacterium breve CECT
7263]
Length = 675
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 6/129 (4%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A ++ V PL + FG++T +++ G HQ+ L++ + +V+ P
Sbjct: 126 PRGLVLAPTRELANQINDVLMPLARTFGMNTTTIYGGVKYIHQVRDLKAGA-DIVVACPG 184
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR---QSISGKPHTVVFNDCLTYTS 372
RL L+ KA+ +S V ++V+D D ++ L ++ + IS ++F+ L +
Sbjct: 185 RLEDLLRQKALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISPNAQHMLFSATLDH-G 243
Query: 373 VPAVQNLLL 381
V V N L
Sbjct: 244 VDEVVNTFL 252
>gi|299769392|ref|YP_003731418.1| ATP-dependent RNA helicase RhlB [Acinetobacter oleivorans DR1]
gi|298699480|gb|ADI90045.1| ATP-dependent RNA helicase RhlB [Acinetobacter oleivorans DR1]
Length = 383
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 23/224 (10%)
Query: 254 FTG-PFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
F G P L L ++E A ++ S K L F +H V+L G D Q L + + +V
Sbjct: 75 FRGEPRALILAPTRELALQIESDAKLLTKFSDLHIVTLLGGVDFDKQKKQLDANFVDIIV 134
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFND 366
+TP RL+ V K + + + LV+D D L + +++ + P T++F+
Sbjct: 135 ATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQRQTLMFSA 194
Query: 367 CLTYTSVPAVQNLLLGSIN-RLSLNQSVASQSACIIQSVNVCA-SDEEKILKGIQVLDHA 424
+Y + + L I + Q + + Q V V A D+ ++L+ I
Sbjct: 195 TFSYDVLNLARQWLFEPITVEIEPEQKTNND---VEQRVYVVAKQDKYRLLQDI------ 245
Query: 425 YGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
EP+ KV+ + + + L LK GY + S I
Sbjct: 246 ----LREEPIDKVMIFANRRDQVRRLYDHLKRDGYRVGMLSGEI 285
>gi|389613443|dbj|BAM20070.1| DEAD box ATP-dependent RNA helicase, partial [Papilio xuthus]
Length = 388
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 97/218 (44%), Gaps = 15/218 (6%)
Query: 200 PLFVNSWGIEFWKCYSSAKDI--LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGP 257
P + S G W S K++ + +G+ T+ A+++ + KEK+G GP
Sbjct: 120 PTIIQSQG---WPVALSGKNLVGIAQTGTGKTL---AYLLPAV---VHIKEKQGRRSKGP 170
Query: 258 FLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
+L L ++E A ++ V K + + + +H GA Q L+ + L++TP R
Sbjct: 171 RVLVLAPTRELARQIEEVAKEFETLLNVRCLCIHGGANRGPQAAALKEG-VDILIATPGR 229
Query: 317 LLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPH--TVVFNDCLTYTSVP 374
L ++ K ++ + +V+D D + IR+++ PH ++ V
Sbjct: 230 LNDFINSKTTTLTRCTYVVLDEADRMLDMGFEPQIREALEEVPHERQILMFSATWPKEVE 289
Query: 375 AVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEE 412
+ LG ++++ + S + I Q+ ++C DE+
Sbjct: 290 HLAKDYLGEFIQVNVGSTELSANXNIQQNFHICEQDEK 327
>gi|445448034|ref|ZP_21443839.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-A-92]
gi|444758217|gb|ELW82718.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-A-92]
Length = 383
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 23/224 (10%)
Query: 254 FTG-PFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
F G P L L ++E A ++ S K L F +H V+L G D Q L + + +V
Sbjct: 75 FRGEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLDANFVDIMV 134
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFND 366
+TP RL+ V K + + + LV+D D L + +++ + P T++F+
Sbjct: 135 ATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQRQTLMFSA 194
Query: 367 CLTYTSVPAVQNLLLGSIN-RLSLNQSVASQSACIIQSVNVCA-SDEEKILKGIQVLDHA 424
+Y + + L + + Q + + Q V V A D+ ++L+ I
Sbjct: 195 TFSYDVLNLARQWLFEPVTVEIEPEQKTNND---VEQRVYVVAKQDKYRLLQDI------ 245
Query: 425 YGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
EP+ KV+ + + + L LK GY + S I
Sbjct: 246 ----LREEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEI 285
>gi|405982644|ref|ZP_11040955.1| hypothetical protein HMPREF9451_00030 [Slackia piriformis YIT
12062]
gi|404389353|gb|EJZ84429.1| hypothetical protein HMPREF9451_00030 [Slackia piriformis YIT
12062]
Length = 653
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTV-SLHPGAAIDHQITGLRSCEPEFLVSTP 314
GPF+L + ++E A+++ C P+ H + + G + D QI L + ++TP
Sbjct: 54 GPFMLVITPTRELASQISDTCMPIGKHTRHFIGTFVGGVSYDPQIRKLERGL-DVAIATP 112
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHT 361
RL+ L+ AID++ V +LV+D D + + + ++ P T
Sbjct: 113 GRLIDLMERGAIDLNSVEILVLDEADRMLDMGFWPQVERIVNATPET 159
>gi|169795350|ref|YP_001713143.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AYE]
gi|184158781|ref|YP_001847120.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ACICU]
gi|215482884|ref|YP_002325087.1| ATP-dependent RNA helicase [Acinetobacter baumannii AB307-0294]
gi|239502877|ref|ZP_04662187.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AB900]
gi|260554464|ref|ZP_05826685.1| superfamily II DNA and RNA helicase [Acinetobacter baumannii ATCC
19606 = CIP 70.34]
gi|332850462|ref|ZP_08432782.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013150]
gi|332871914|ref|ZP_08440326.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013113]
gi|332875150|ref|ZP_08442983.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6014059]
gi|384143899|ref|YP_005526609.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii
MDR-ZJ06]
gi|387123287|ref|YP_006289169.1| DNA/RNA helicase [Acinetobacter baumannii MDR-TJ]
gi|403673418|ref|ZP_10935715.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. NCTC 10304]
gi|407933404|ref|YP_006849047.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii TYTH-1]
gi|417546745|ref|ZP_12197831.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC032]
gi|417549949|ref|ZP_12201029.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-18]
gi|417551996|ref|ZP_12203066.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-81]
gi|417560504|ref|ZP_12211383.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC137]
gi|417567342|ref|ZP_12218214.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC143]
gi|417569100|ref|ZP_12219958.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC189]
gi|417578007|ref|ZP_12228844.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-17]
gi|417869092|ref|ZP_12514087.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ABNIH1]
gi|417874056|ref|ZP_12518915.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ABNIH2]
gi|417882420|ref|ZP_12526717.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ABNIH4]
gi|421198208|ref|ZP_15655375.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC109]
gi|421203948|ref|ZP_15661079.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AC12]
gi|421457373|ref|ZP_15906710.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-123]
gi|421534632|ref|ZP_15980904.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AC30]
gi|421620338|ref|ZP_16061275.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC074]
gi|421626256|ref|ZP_16067085.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC098]
gi|421628334|ref|ZP_16069117.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC180]
gi|421633485|ref|ZP_16074114.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-13]
gi|421651643|ref|ZP_16092010.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC0162]
gi|421653977|ref|ZP_16094308.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-72]
gi|421660250|ref|ZP_16100450.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-83]
gi|421664382|ref|ZP_16104522.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC110]
gi|421668451|ref|ZP_16108490.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC087]
gi|421671560|ref|ZP_16111530.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC099]
gi|421674539|ref|ZP_16114468.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC065]
gi|421676931|ref|ZP_16116826.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC111]
gi|421686321|ref|ZP_16126076.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-143]
gi|421691671|ref|ZP_16131330.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-116]
gi|421697429|ref|ZP_16136992.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-692]
gi|421703947|ref|ZP_16143397.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ZWS1122]
gi|421707901|ref|ZP_16147282.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ZWS1219]
gi|421786842|ref|ZP_16223225.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-82]
gi|421794385|ref|ZP_16230486.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-2]
gi|421795484|ref|ZP_16231567.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-21]
gi|421804221|ref|ZP_16240131.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-A-694]
gi|421806908|ref|ZP_16242770.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC035]
gi|424051714|ref|ZP_17789246.1| hypothetical protein W9G_00403 [Acinetobacter baumannii Ab11111]
gi|424059338|ref|ZP_17796829.1| hypothetical protein W9K_00452 [Acinetobacter baumannii Ab33333]
gi|424063264|ref|ZP_17800749.1| hypothetical protein W9M_00547 [Acinetobacter baumannii Ab44444]
gi|425750087|ref|ZP_18868054.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-348]
gi|425753378|ref|ZP_18871262.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-113]
gi|445400708|ref|ZP_21430179.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-57]
gi|445460077|ref|ZP_21447986.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC047]
gi|445473935|ref|ZP_21453047.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC338]
gi|445477438|ref|ZP_21454354.1| type III restriction enzyme, res subunit / helicase C-terminal
domain multi-domain protein [Acinetobacter baumannii
Naval-78]
gi|445492428|ref|ZP_21460375.1| DEAD/DEAH box helicase [Acinetobacter baumannii AA-014]
gi|169148277|emb|CAM86142.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii AYE]
gi|183210375|gb|ACC57773.1| Superfamily II DNA and RNA helicase [Acinetobacter baumannii ACICU]
gi|193077811|gb|ABO12683.2| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii ATCC
17978]
gi|213986779|gb|ACJ57078.1| ATP-dependent RNA helicase rhlB [Acinetobacter baumannii
AB307-0294]
gi|260411006|gb|EEX04303.1| superfamily II DNA and RNA helicase [Acinetobacter baumannii ATCC
19606 = CIP 70.34]
gi|332730733|gb|EGJ62044.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013150]
gi|332731128|gb|EGJ62429.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6013113]
gi|332736594|gb|EGJ67588.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii 6014059]
gi|342229810|gb|EGT94660.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ABNIH2]
gi|342231499|gb|EGT96308.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ABNIH1]
gi|342237781|gb|EGU02234.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ABNIH4]
gi|347594392|gb|AEP07113.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii
MDR-ZJ06]
gi|385877779|gb|AFI94874.1| DNA/RNA helicase, superfamily II [Acinetobacter baumannii MDR-TJ]
gi|395523086|gb|EJG11175.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC137]
gi|395553014|gb|EJG19022.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC143]
gi|395553323|gb|EJG19329.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC189]
gi|395566176|gb|EJG27821.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC109]
gi|395568704|gb|EJG29374.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-17]
gi|398326489|gb|EJN42636.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AC12]
gi|400207097|gb|EJO38068.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-123]
gi|400384633|gb|EJP43311.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC032]
gi|400387917|gb|EJP50990.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-18]
gi|400392255|gb|EJP59301.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-81]
gi|404558190|gb|EKA63474.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-692]
gi|404562280|gb|EKA67504.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-116]
gi|404568923|gb|EKA74018.1| DEAD/DEAH box helicase [Acinetobacter baumannii IS-143]
gi|404665270|gb|EKB33233.1| hypothetical protein W9G_00403 [Acinetobacter baumannii Ab11111]
gi|404670076|gb|EKB37968.1| hypothetical protein W9K_00452 [Acinetobacter baumannii Ab33333]
gi|404674832|gb|EKB42568.1| hypothetical protein W9M_00547 [Acinetobacter baumannii Ab44444]
gi|407190994|gb|EKE62205.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ZWS1219]
gi|407191116|gb|EKE62326.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii ZWS1122]
gi|407901985|gb|AFU38816.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii TYTH-1]
gi|408507576|gb|EKK09270.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC0162]
gi|408511827|gb|EKK13474.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-72]
gi|408695527|gb|EKL41082.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC098]
gi|408700633|gb|EKL46081.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC074]
gi|408705274|gb|EKL50616.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-83]
gi|408706015|gb|EKL51339.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-13]
gi|408707441|gb|EKL52725.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC180]
gi|408712679|gb|EKL57862.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC110]
gi|409987522|gb|EKO43703.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AC30]
gi|410380343|gb|EKP32931.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC087]
gi|410381522|gb|EKP34087.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC099]
gi|410383839|gb|EKP36358.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC065]
gi|410393888|gb|EKP46239.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC111]
gi|410394532|gb|EKP46860.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-2]
gi|410401981|gb|EKP54116.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-21]
gi|410410452|gb|EKP62356.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-82]
gi|410411592|gb|EKP63461.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-A-694]
gi|410417451|gb|EKP69221.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC035]
gi|425487489|gb|EKU53847.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-348]
gi|425497990|gb|EKU64079.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-113]
gi|444763667|gb|ELW88003.1| DEAD/DEAH box helicase [Acinetobacter baumannii AA-014]
gi|444768647|gb|ELW92858.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC338]
gi|444773312|gb|ELW97408.1| DEAD/DEAH box helicase [Acinetobacter baumannii OIFC047]
gi|444776516|gb|ELX00558.1| type III restriction enzyme, res subunit / helicase C-terminal
domain multi-domain protein [Acinetobacter baumannii
Naval-78]
gi|444783282|gb|ELX07143.1| DEAD/DEAH box helicase [Acinetobacter baumannii Naval-57]
gi|452950728|gb|EME56182.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii MSP4-16]
Length = 383
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 23/224 (10%)
Query: 254 FTG-PFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
F G P L L ++E A ++ S K L F +H V+L G D Q L + + +V
Sbjct: 75 FRGEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLDANFVDIMV 134
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFND 366
+TP RL+ V K + + + LV+D D L + +++ + P T++F+
Sbjct: 135 ATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQRQTLMFSA 194
Query: 367 CLTYTSVPAVQNLLLGSIN-RLSLNQSVASQSACIIQSVNVCA-SDEEKILKGIQVLDHA 424
+Y + + L + + Q + + Q V V A D+ ++L+ I
Sbjct: 195 TFSYDVLNLARQWLFEPVTVEIEPEQKTNND---VEQRVYVVAKQDKYRLLQDI------ 245
Query: 425 YGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
EP+ KV+ + + + L LK GY + S I
Sbjct: 246 ----LREEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEI 285
>gi|222624792|gb|EEE58924.1| hypothetical protein OsJ_10575 [Oryza sativa Japonica Group]
Length = 696
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 116/255 (45%), Gaps = 24/255 (9%)
Query: 216 SAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
S +DI+ +GS T + ++ D +++EG P + ++E A ++
Sbjct: 181 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEG-----PIGVVCAPTRELAHQIY 235
Query: 274 SVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVSTPERLLKLVSLKAIDVSGV 331
K K + + +++ G + Q L++ CE +++TP RL+ L+ +KA+ +
Sbjct: 236 LEAKKFAKPYNLRVAAVYGGVSKFDQFKELKAGCE--IVIATPGRLIDLLKMKALKMFRA 293
Query: 332 SLLVVDRLDSLSKGDTLSLIRQSISG--KP--HTVVFNDCLTYTSVPAVQNLLLGSINRL 387
+ LV+D D + IR SI G +P T++F+ + Y + +L I R+
Sbjct: 294 TYLVLDEADRMFDLGFEPQIR-SIVGQIRPDRQTLLFSATMPYKVERLAREILTDPI-RV 351
Query: 388 SLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQ 447
++ Q V S + I Q VNV SD EK+ ++ L D VL K ++
Sbjct: 352 TVGQ-VGSANEDIKQVVNVLPSDAEKMPWLLEKLPGMIDDG------DVLVFAAKKARVD 404
Query: 448 NLVSTLKCKGYSIST 462
+ S L +G+ I+
Sbjct: 405 EIESQLNQRGFRIAA 419
>gi|115452607|ref|NP_001049904.1| Os03g0308500 [Oryza sativa Japonica Group]
gi|122247124|sp|Q10MH8.1|RH24_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 24
gi|108707754|gb|ABF95549.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|113548375|dbj|BAF11818.1| Os03g0308500 [Oryza sativa Japonica Group]
gi|215737377|dbj|BAG96306.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 770
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 116/255 (45%), Gaps = 24/255 (9%)
Query: 216 SAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
S +DI+ +GS T + ++ D +++EG P + ++E A ++
Sbjct: 255 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEG-----PIGVVCAPTRELAHQIY 309
Query: 274 SVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVSTPERLLKLVSLKAIDVSGV 331
K K + + +++ G + Q L++ CE +++TP RL+ L+ +KA+ +
Sbjct: 310 LEAKKFAKPYNLRVAAVYGGVSKFDQFKELKAGCE--IVIATPGRLIDLLKMKALKMFRA 367
Query: 332 SLLVVDRLDSLSKGDTLSLIRQSISG--KP--HTVVFNDCLTYTSVPAVQNLLLGSINRL 387
+ LV+D D + IR SI G +P T++F+ + Y + +L I R+
Sbjct: 368 TYLVLDEADRMFDLGFEPQIR-SIVGQIRPDRQTLLFSATMPYKVERLAREILTDPI-RV 425
Query: 388 SLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQ 447
++ Q V S + I Q VNV SD EK+ ++ L D VL K ++
Sbjct: 426 TVGQ-VGSANEDIKQVVNVLPSDAEKMPWLLEKLPGMIDDG------DVLVFAAKKARVD 478
Query: 448 NLVSTLKCKGYSIST 462
+ S L +G+ I+
Sbjct: 479 EIESQLNQRGFRIAA 493
>gi|424742777|ref|ZP_18171098.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-141]
gi|422944007|gb|EKU39017.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-141]
Length = 389
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 94/224 (41%), Gaps = 23/224 (10%)
Query: 254 FTG-PFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLV 311
F G P L L ++E A ++ S K L F +H V+L G D Q L + + +V
Sbjct: 81 FRGEPRALILAPTRELALQIESDAKLLTKFTDLHVVTLLGGVDFDKQKKQLDANFVDIIV 140
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFND 366
+TP RL+ V K + + + LV+D D L + +++ + P T++F+
Sbjct: 141 ATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQRQTLMFSA 200
Query: 367 CLTYTSVPAVQNLLLGSIN-RLSLNQSVASQSACIIQSVNVCA-SDEEKILKGIQVLDHA 424
+Y + + L I + Q + + Q V V A D+ ++L+ I
Sbjct: 201 TFSYDVLNLARQWLFEPITVEIEPEQKTNND---VEQRVYVVAKQDKYRLLQDI------ 251
Query: 425 YGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
EP+ KV+ + + + L LK GY + S I
Sbjct: 252 ----LREEPIDKVMIFANRRDQVRRLYDHLKRDGYRVGMLSGEI 291
>gi|384131186|ref|YP_005513798.1| rhlB [Acinetobacter baumannii 1656-2]
gi|385238196|ref|YP_005799535.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii
TCDC-AB0715]
gi|416147350|ref|ZP_11601728.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AB210]
gi|322507406|gb|ADX02860.1| rhlB [Acinetobacter baumannii 1656-2]
gi|323518696|gb|ADX93077.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii
TCDC-AB0715]
gi|333365581|gb|EGK47595.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii AB210]
Length = 389
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 23/224 (10%)
Query: 254 FTG-PFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
F G P L L ++E A ++ S K L F +H V+L G D Q L + + +V
Sbjct: 81 FRGEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLDANFVDIMV 140
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFND 366
+TP RL+ V K + + + LV+D D L + +++ + P T++F+
Sbjct: 141 ATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQRQTLMFSA 200
Query: 367 CLTYTSVPAVQNLLLGSIN-RLSLNQSVASQSACIIQSVNVCA-SDEEKILKGIQVLDHA 424
+Y + + L + + Q + + Q V V A D+ ++L+ I
Sbjct: 201 TFSYDVLNLARQWLFEPVTVEIEPEQKTNND---VEQRVYVVAKQDKYRLLQDI------ 251
Query: 425 YGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
EP+ KV+ + + + L LK GY + S I
Sbjct: 252 ----LREEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEI 291
>gi|169633001|ref|YP_001706737.1| ATP-dependent RNA helicase RhlB [Acinetobacter baumannii SDF]
gi|169151793|emb|CAP00614.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter baumannii]
Length = 383
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 23/224 (10%)
Query: 254 FTG-PFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
F G P L L ++E A ++ S K L F +H V+L G D Q L + + +V
Sbjct: 75 FRGEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKQLDANFVDIMV 134
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFND 366
+TP RL+ V K + + + LV+D D L + +++ + P T++F+
Sbjct: 135 ATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQRQTLMFSA 194
Query: 367 CLTYTSVPAVQNLLLGSIN-RLSLNQSVASQSACIIQSVNVCA-SDEEKILKGIQVLDHA 424
+Y + + L + + Q + + Q V V A D+ ++L+ I
Sbjct: 195 TFSYDVLNLARQWLFEPVTVEIEPEQKTNND---VEQRVYVVAKQDKYRLLQDI------ 245
Query: 425 YGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
EP+ KV+ + + + L LK GY + S I
Sbjct: 246 ----LREEPIDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEI 285
>gi|66805957|ref|XP_636700.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4]
gi|74896924|sp|Q54IV3.1|DDX42_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx42; AltName:
Full=DEAD box protein 42
gi|60465098|gb|EAL63199.1| hypothetical protein DDB_G0288501 [Dictyostelium discoideum AX4]
Length = 986
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 9/163 (5%)
Query: 256 GPFLLFLVSSQEKAAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVST 313
GP LFL ++E A ++ K K F + T L+ G + Q L++ CE +V+T
Sbjct: 378 GPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCE--IIVAT 435
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTY 370
P RL+ ++ LKA ++ VS LV+D D + G + I + T++F+
Sbjct: 436 PGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLFSATFK- 494
Query: 371 TSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEK 413
+V +L ++S+ + S ++ I Q V V SD +K
Sbjct: 495 PNVEEFARTILSDPIKISIGM-IGSANSDITQIVQVLKSDSDK 536
>gi|115491279|ref|XP_001210267.1| hypothetical protein ATEG_00181 [Aspergillus terreus NIH2624]
gi|121743211|sp|Q0D1K3.1|PRP5_ASPTN RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp5
gi|114197127|gb|EAU38827.1| hypothetical protein ATEG_00181 [Aspergillus terreus NIH2624]
Length = 1181
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 124/288 (43%), Gaps = 37/288 (12%)
Query: 198 DNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFT 255
+NP + S I S +D++ +GS T+ + + D + EG
Sbjct: 570 ENPTSIQSQAI---PAIMSGRDVIGVAKTGSGKTVAFLIPMFRHIKDQRPLENMEG---- 622
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
P L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 623 -PIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIVVCTP 680
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 681 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANVRPDRQTVLFSATF 740
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVA------SQSACIIQSVNVCASDEEKILKGIQVLD 422
+ ++ R +LN+ V S A I + ++++K ++ +++L
Sbjct: 741 PRN---------MEALARKTLNKPVEIVVGGKSVVAPEITQIVEVRNEDKKFVRLLELLG 791
Query: 423 HAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+ Y +E + L V + L+ L KGY SI G + I
Sbjct: 792 NLYSSD-ENEDARALIFVERQEAADTLLRELMRKGYPCMSIHGGKDQI 838
>gi|452824121|gb|EME31126.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 573
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P + + ++E ++ VC+ L + GI ++SL GA I QI L+ +P ++ TP
Sbjct: 137 PQVFIIEPTRELCVQIAKVCESLASNMGIRSISLIGGANIQRQIDSLKERQPHIVLGTPG 196
Query: 316 RLLKLVSLKAI-DVSGVSLLVVDR----LDSLSKGDTLSLIRQSISGKPHTV 362
RL +L+ + I + + VS++V+D LD S G+ L + Q + + T+
Sbjct: 197 RLYELLIERHILNATQVSIVVIDEVDHCLDMPSNGEKLEALLQRCASRKQTI 248
>gi|347534719|ref|YP_004841389.1| hypothetical protein LSA_10610 [Lactobacillus sanfranciscensis TMW
1.1304]
gi|345504775|gb|AEN99457.1| hypothetical protein LSA_10610 [Lactobacillus sanfranciscensis TMW
1.1304]
Length = 447
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 15/153 (9%)
Query: 210 FWKCYSSAKDI--LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQE 267
+ +DI L +GS T+ A+++ A+ +A + G L + SQE
Sbjct: 39 YQPMIDGGEDIVGLSPTGSGKTV---AFLMPILANIMAGE--------GTQALIVEPSQE 87
Query: 268 KAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI 326
A +V S+ + F + + L GA + Q L+ PE +V TP R+L L+ + +
Sbjct: 88 LAMQVTSIIRDWAGPFKVKILPLIGGANVKRQQEQLKK-RPEIVVGTPGRILSLLDERKL 146
Query: 327 DVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
V+ V +V+D D L + D+L RQ ++ P
Sbjct: 147 KVNHVDTVVIDEADDLLQDDSLEKARQIVAAVP 179
>gi|449549675|gb|EMD40640.1| hypothetical protein CERSUDRAFT_80293 [Ceriporiopsis subvermispora
B]
Length = 877
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 94/214 (43%), Gaps = 18/214 (8%)
Query: 254 FTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVS 312
GP + + ++E A ++ CKP L+ G+ V + G+ I QI ++ E +V
Sbjct: 294 MEGPVAVVMTPTRELAVQIHRECKPFLRVLGLRAVCAYGGSPIKDQIAEMKKGA-EIIVC 352
Query: 313 TPERLLKLV---SLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFND 366
TP R++ L+ S + ++ V+ LV+ DR+ + + I +I TV+F+
Sbjct: 353 TPGRMIDLLTANSGRVTNLKRVTYLVLDEADRMFDMGFEPQVMKIVNNIRPDRQTVLFS- 411
Query: 367 CLTYTSVPAVQNLLLGSINRLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHA 424
+ P + L I R L +V +S A I + ++ K + +++L
Sbjct: 412 ----ATFPRQMDSLARKILRKPLEITVGGRSVVAPEIDQIVEVRDEDSKFNRLLEILGQT 467
Query: 425 YGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
Y + S + L V + NL+ L +GY
Sbjct: 468 YNEDPES---RTLIFVDRQEAADNLLRELLRRGY 498
>gi|346979464|gb|EGY22916.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Verticillium
dahliae VdLs.17]
Length = 1182
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 101/234 (43%), Gaps = 41/234 (17%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LK G+ V + GA I QI L+ E +V TP
Sbjct: 650 GPIGLIMTPTRELAVQIHRDCKPFLKPMGMRAVCAYGGAPIKDQIADLKRGA-EIVVCTP 708
Query: 315 ERLLKLVSL---KAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L+ + ++ VS +V+D D + G +++ + +P T++F+
Sbjct: 709 GRMIDLLGANQGRVTNLRRVSYVVLDEADRMFDMGFEPQVMKIFANMRPDRQTILFS--- 765
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
++P + + L + + + +V +S + I + ++VLD GD
Sbjct: 766 --ATMPRIIDSLTKKVLKSPVEVTVGGRSVVAPE-----------ITQKVEVLDE--GDK 810
Query: 429 FH------------SEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
F E + L V + K +L+ L KGY SI G + +
Sbjct: 811 FFHLLGLLGELYEEDEDARSLIFVERQEKADDLLKELMTKGYPCMSIHGGKDQV 864
>gi|419797020|ref|ZP_14322524.1| DEAD/DEAH box helicase [Neisseria sicca VK64]
gi|385698868|gb|EIG29205.1| DEAD/DEAH box helicase [Neisseria sicca VK64]
Length = 457
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 21/173 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+R +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVRSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D +
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRM 162
>gi|261365074|ref|ZP_05977957.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
25996]
gi|288566497|gb|EFC88057.1| putative ATP-dependent RNA helicase RhlE [Neisseria mucosa ATCC
25996]
Length = 457
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 21/173 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+R +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVRSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D +
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRM 162
>gi|15615910|ref|NP_244214.1| RNA helicase [Bacillus halodurans C-125]
gi|10175971|dbj|BAB07067.1| RNA helicase [Bacillus halodurans C-125]
Length = 389
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L +QE A ++ V K L A I + L GA I Q+ L+ +P V TP R+L
Sbjct: 74 LILAPTQELAMQIVEVAKQLTATTSITVLPLIGGANIKRQVEKLKKKKPHVAVGTPGRIL 133
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL 342
+L+ +K + V V ++VVD D +
Sbjct: 134 ELMEMKKLKVPHVKMIVVDEADRM 157
>gi|302414752|ref|XP_003005208.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Verticillium
albo-atrum VaMs.102]
gi|261356277|gb|EEY18705.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Verticillium
albo-atrum VaMs.102]
Length = 1145
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 101/234 (43%), Gaps = 41/234 (17%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LK G+ V + GA I QI L+ E +V TP
Sbjct: 592 GPIGLIMTPTRELAVQIHRDCKPFLKPMGMRAVCAYGGAPIKDQIADLKRGA-EIVVCTP 650
Query: 315 ERLLKLVSL---KAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L+ + ++ VS +V+D D + G +++ + +P T++F+
Sbjct: 651 GRMIDLLGANQGRVTNLRRVSYVVLDEADRMFDMGFEPQVMKIFANMRPDRQTILFS--- 707
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
++P + + L + + + +V +S + I + ++VLD GD
Sbjct: 708 --ATMPRIIDSLTKKVLKSPVEVTVGGRSVVAPE-----------ITQKVEVLDE--GDK 752
Query: 429 FH------------SEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
F E + L V + K +L+ L KGY SI G + +
Sbjct: 753 FFHLLGLLGELYEEDEDARSLIFVERQEKADDLLKELMTKGYPCMSIHGGKDQV 806
>gi|365875004|ref|ZP_09414534.1| dead/deah box helicase domain protein [Elizabethkingia anophelis
Ag1]
gi|442589352|ref|ZP_21008160.1| dead/deah box helicase domain protein [Elizabethkingia anophelis
R26]
gi|365757116|gb|EHM99025.1| dead/deah box helicase domain protein [Elizabethkingia anophelis
Ag1]
gi|442560962|gb|ELR78189.1| dead/deah box helicase domain protein [Elizabethkingia anophelis
R26]
Length = 560
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 11/117 (9%)
Query: 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-L 342
I TV+++ G++I+ QI LR +P+ +V TP R++ L++ K++D S + LV+D D L
Sbjct: 101 IKTVAVYGGSSINDQIRSLRE-KPQIIVGTPGRVIDLINRKSLDFSNIHWLVLDEADEML 159
Query: 343 SKG--DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLL-------LGSINRLSLN 390
S G D L I T +F+ ++ +N L +GSIN + N
Sbjct: 160 SMGFKDDLETIISETPETKQTFLFSATMSKEVERISKNYLTKPHRISVGSINEVKKN 216
>gi|393215693|gb|EJD01184.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 868
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 98/215 (45%), Gaps = 20/215 (9%)
Query: 254 FTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVS 312
GP + + ++E A ++ CKP LK + V + G+ I QI ++ E +V
Sbjct: 272 MEGPMAIVMTPTRELATQIHRECKPFLKVLNLRAVCAYGGSPIKDQIAEMKKGA-EIIVC 330
Query: 313 TPERLLKLV---SLKAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFND 366
TP R++ L+ S + ++ V+ LV+D D + G +++ + +P TV+F+
Sbjct: 331 TPGRMIDLLTANSGRVTNLKRVTYLVLDEADRMFDMGFEPQVMKIVGNIRPDRQTVLFS- 389
Query: 367 CLTYTSVPAVQNLLLGSINRLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHA 424
+ P + L I + L +V +S A I+ + +E K + +++L
Sbjct: 390 ----ATFPKQMDSLARKILKKPLEITVGGRSVVAAEIEQIVEVRVEETKFHRLLEIL--- 442
Query: 425 YGDHFHSEP-LKVLYIVGKDSKFQNLVSTLKCKGY 458
G ++ +P + L V + NL+ L KGY
Sbjct: 443 -GQMYNEDPECRTLIFVDRQEAADNLLRELLRKGY 476
>gi|328955216|ref|YP_004372549.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans
PW2]
gi|328455540|gb|AEB06734.1| DEAD/DEAH box helicase domain protein [Coriobacterium glomerans
PW2]
Length = 618
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 74/141 (52%), Gaps = 10/141 (7%)
Query: 245 ARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIH-TVSLHPGAAIDHQITGLR 303
+R+ EG GP +L + ++E A ++ SVC + H V++ G + Q + LR
Sbjct: 128 SRRSAEG---RGPKMLIITPTRELAQQIDSVCTQIATRTKHIAVTVVGGVGYNPQKSALR 184
Query: 304 -SCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--- 359
C+ LV+TP RL+ L+ ++S V +LV+D D + L ++Q ++ P
Sbjct: 185 RGCD--ILVATPGRLIDLIDQGVCNLSEVEILVIDEADRMLDMGFLPSVKQIVALTPPER 242
Query: 360 HTVVFNDCLTYTSVPAVQNLL 380
T++F+ L ++ ++++L+
Sbjct: 243 QTLLFSATLDEKTLGSIRDLV 263
>gi|298368676|ref|ZP_06979994.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282679|gb|EFI24166.1| ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon 014 str.
F0314]
Length = 443
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 24/199 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+R +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVRSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--D 346
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D L G D
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFID 169
Query: 347 TLSLIRQSISGKPHTVVFN 365
+ I ++ T++F+
Sbjct: 170 DIETIVEATPSDRQTLLFS 188
>gi|226952982|ref|ZP_03823446.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter sp. ATCC
27244]
gi|294650564|ref|ZP_06727921.1| ATP-dependent RNA helicase RhlB [Acinetobacter haemolyticus ATCC
19194]
gi|226836303|gb|EEH68686.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter sp. ATCC
27244]
gi|292823561|gb|EFF82407.1| ATP-dependent RNA helicase RhlB [Acinetobacter haemolyticus ATCC
19194]
Length = 383
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 93/224 (41%), Gaps = 23/224 (10%)
Query: 254 FTG-PFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
F G P L L ++E A ++ S K L F +H V+L G D Q L + +V
Sbjct: 75 FRGEPRALILAPTRELALQIESDAKSLTKFSNLHLVTLLGGVDFDKQKKMLDRNFVDIIV 134
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFND 366
+TP RL+ V K + + + LV+D D L + +++ + P T++F+
Sbjct: 135 ATPGRLIDFVEQKEVWLDRIEFLVIDEADRLLDMGFIPSVKRIVRYSPSKEQRQTLMFSA 194
Query: 367 CLTYTSVPAVQNLLLGSIN-RLSLNQSVASQSACIIQSVNVCA-SDEEKILKGIQVLDHA 424
+Y + + L + + Q + + Q V V A D+ K+L+ I
Sbjct: 195 TFSYDVLNLARQWLFEPVTVEIEPEQKT---NVDVEQRVYVVAKEDKYKLLQDI------ 245
Query: 425 YGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
EP+ KV+ + + + L LK GY + S I
Sbjct: 246 ----LRDEPIDKVMIFANRRDQVRRLYDHLKRDGYKVGMLSGEI 285
>gi|374314715|ref|YP_005061143.1| DNA/RNA helicase [Sphaerochaeta pleomorpha str. Grapes]
gi|359350359|gb|AEV28133.1| DNA/RNA helicase, superfamily II [Sphaerochaeta pleomorpha str.
Grapes]
Length = 380
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 18/160 (11%)
Query: 188 NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIA 245
A+ HD + P+ E S DIL +GS T+ + I+ +
Sbjct: 14 TALEHDNITTPYPI-----QTEVIPAILSNNDILGIAKTGSGKTLSYVLPIL------MH 62
Query: 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL---KAFGIHTVSLHPGAAIDHQITGL 302
++KE +L +V ++E AA+V SV A + T+++ G +I+ Q+ +
Sbjct: 63 LQKKEVLKNRQIQVLVMVPTRELAAQVNSVFSQYIHQTALDLKTLAVFGGTSINSQMMVM 122
Query: 303 RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
R+ LV+TP RLL+L+SL A+ +S + ++V+D D +
Sbjct: 123 RNLS--ILVATPGRLLELISLHAVHLSSLEIVVIDEADKM 160
>gi|357050814|ref|ZP_09112010.1| hypothetical protein HMPREF9478_01993 [Enterococcus saccharolyticus
30_1]
gi|355380439|gb|EHG27575.1| hypothetical protein HMPREF9478_01993 [Enterococcus saccharolyticus
30_1]
Length = 418
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 22/193 (11%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L SSQE A +V V + + + + L GA QI L++ +PE LV TP R+
Sbjct: 69 LLILTSSQELAMQVTQVARDWAQLLDLQVLPLIGGANTKRQIEKLKA-KPEVLVGTPGRV 127
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377
L+L+ LK + + +V+D +D L K L + ++ P T + A
Sbjct: 128 LELIKLKKVKTQQIHGVVLDEVDQLLKEGAFGLASKILTLIPKQA------TRSFFSATA 181
Query: 378 NLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVL 437
N +L I L+ Q ++V D+ K V+ H Y ++ + + L
Sbjct: 182 NEILKEIQELAFETP---------QVIDVTEEDQSK-----GVIHHYYLNYPSRKLVDAL 227
Query: 438 YIVGKDSKFQNLV 450
+ FQ L+
Sbjct: 228 RRLAYLPDFQGLI 240
>gi|420161871|ref|ZP_14668633.1| ATP-dependent RNA helicase [Weissella koreensis KCTC 3621]
gi|394744878|gb|EJF33797.1| ATP-dependent RNA helicase [Weissella koreensis KCTC 3621]
Length = 461
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G LL + SQE A + V + FG+ T++L GA + HQ+ L+ PE LV TP
Sbjct: 61 GEQLLVMAPSQELAMQTTRVMREWANIFGLKTLALTGGANVKHQLDRLKK-HPEILVGTP 119
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDT 347
R+ +LV+ K + + + L++D D L + +T
Sbjct: 120 GRVAELVNNKKLKLQRLRTLILDEADILLQEET 152
>gi|359441576|ref|ZP_09231469.1| probable DEAD-box ATP-dependent RNA helicase SERP1688
[Pseudoalteromonas sp. BSi20429]
gi|392532799|ref|ZP_10279936.1| DEAD/DEAH box helicase [Pseudoalteromonas arctica A 37-1-2]
gi|358036596|dbj|GAA67718.1| probable DEAD-box ATP-dependent RNA helicase SERP1688
[Pseudoalteromonas sp. BSi20429]
Length = 442
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 33/253 (13%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETS--GSSSTIVQIAWIVATAADS 243
+E + H G+ Q P + + + + DI S GS T+ A+++
Sbjct: 12 LETQLAHQGITQ--PTDIQAHAVP---TALAGHDIFAQSKTGSGKTL---AFLLPAVQRV 63
Query: 244 IARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGL 302
+ +K S P +L + ++E A +V + + L A I V + G + QI L
Sbjct: 64 MKQK---ALSKRDPRVLIVAPTRELATQVFTQLRLLIAGTAIKAVKILGGENFNDQIKAL 120
Query: 303 RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGK- 358
R+ +P+F+V+TP RL ++ +++ +SG+ LL+ D D L + L +I + + +
Sbjct: 121 RN-DPQFVVATPGRLADHITKRSLQLSGLELLIFDEADRILDLGFTEQLKMINEQANHRL 179
Query: 359 PHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGI 418
T++F+ L + V A+ LL +++L+ + N SD ++ L
Sbjct: 180 RQTLLFSATLDHAQVDALSRNLLKKPKQITLS------------AANEQHSDIKQTLYLA 227
Query: 419 QVLDH--AYGDHF 429
LDH A +HF
Sbjct: 228 DHLDHKEALLEHF 240
>gi|254252033|ref|ZP_04945351.1| hypothetical protein BDAG_01244 [Burkholderia dolosa AUO158]
gi|124894642|gb|EAY68522.1| hypothetical protein BDAG_01244 [Burkholderia dolosa AUO158]
Length = 523
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 141 PGLLVLTPTRELAMQVTTAAS---TYGKHLKRLRTVSILGGVAYGQQLM-LLAKNPEILV 196
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 197 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIETIVAATPASRQTMLFSATL 256
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ + LL R+ + Q + S+ A I Q+V+ + K ++LDH D
Sbjct: 257 D-GKIGSLTSRLLKDPERIEIQQRLESR-ANIAQTVHYVDDRDHK----DRLLDHLLRD 309
>gi|427423258|ref|ZP_18913417.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-136]
gi|425699903|gb|EKU69501.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-136]
Length = 383
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 23/224 (10%)
Query: 254 FTG-PFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
F G P L L ++E A ++ S K L F +H V+L G D Q L + + +V
Sbjct: 75 FRGEPRALILAPTRELALQIESDAKFLTKFSNLHLVTLLGGVDFDKQKKQLDANFVDIMV 134
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFND 366
+TP RL+ V K + + + LV+D D L + +++ + P T++F+
Sbjct: 135 ATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQRQTLMFSA 194
Query: 367 CLTYTSVPAVQNLLLGSIN-RLSLNQSVASQSACIIQSVNVCA-SDEEKILKGIQVLDHA 424
+Y + + L + + Q + + Q V V A D+ ++L+ I
Sbjct: 195 TFSYDVLNLARQWLFEPVTVEIEPEQKTNND---VEQRVYVVAKQDKYRLLQDI------ 245
Query: 425 YGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
EP+ KV+ + + + L LK GY + S I
Sbjct: 246 ----LREEPIDKVMIFANRRDQVRRLYDHLKKDGYRVGMLSGEI 285
>gi|339634234|ref|YP_004725875.1| ATP-dependent RNA helicase [Weissella koreensis KACC 15510]
gi|338854030|gb|AEJ23196.1| ATP-dependent RNA helicase [Weissella koreensis KACC 15510]
Length = 461
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G LL + SQE A + V + FG+ T++L GA + HQ+ L+ PE LV TP
Sbjct: 61 GEQLLVMAPSQELAMQTTRVMREWANIFGLKTLALTGGANVKHQLDRLKK-HPEILVGTP 119
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDT 347
R+ +LV+ K + + + L++D D L + +T
Sbjct: 120 GRVAELVNNKKLKLQRLRTLILDEADILLQEET 152
>gi|324510721|gb|ADY44481.1| ATP-dependent RNA helicase abstrakt, partial [Ascaris suum]
Length = 462
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 110/261 (42%), Gaps = 29/261 (11%)
Query: 211 WKCYSSAKDILET--SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268
W SS +DI+ +GS T+ I + R EG P +L L+ ++E
Sbjct: 89 WPIASSGRDIVSIAKTGSGKTLAFILPGIIHTTKQPPRGRGEG-----PSVLVLLPTREL 143
Query: 269 AAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
A +V+ V + KA G+ L GAA Q L + ++TP RLL + +
Sbjct: 144 AQQVQEVSREYCKAMGLSVTCLFGGAARGSQARDLERG-VDVAIATPGRLLDFLESGTTN 202
Query: 328 VSGVSLLVVDRLDSLSKGDTLSLIRQSIS---GKPHTVVFNDCLTYTSVP-AVQNLLLGS 383
+ S LV+D D + IR S G+ T++F+ ++P +QN +
Sbjct: 203 LRRCSYLVLDEADRMLDMGFEEEIRTIFSFFKGQRQTLLFS-----ATMPRKIQNFARSA 257
Query: 384 INR-LSLNQSVASQSAC-IIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVG 441
+ R + +N A ++ ++Q + +DE K ++L D P +VL
Sbjct: 258 LVRAIIVNVGRAGAASLNVLQEIEYVRADE----KLTRIL-----DCLQKTPPRVLIFAE 308
Query: 442 KDSKFQNLVSTLKCKGYSIST 462
K S N+ L KG +++
Sbjct: 309 KKSDVDNIYEYLLVKGVDVAS 329
>gi|359435077|ref|ZP_09225307.1| probable DEAD-box ATP-dependent RNA helicase SERP1688
[Pseudoalteromonas sp. BSi20652]
gi|357918290|dbj|GAA61556.1| probable DEAD-box ATP-dependent RNA helicase SERP1688
[Pseudoalteromonas sp. BSi20652]
Length = 440
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 33/253 (13%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETS--GSSSTIVQIAWIVATAADS 243
+E + H G+ Q P + + + + DI S GS T+ A+++
Sbjct: 12 LETQLAHQGITQ--PTDIQAHAVP---TALAGHDIFAQSKTGSGKTL---AFLLPAVQRV 63
Query: 244 IARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGL 302
+ +K S P +L + ++E A +V + + L A I V + G + QI L
Sbjct: 64 MKQK---ALSKRDPRVLIVAPTRELATQVFTQLRLLIAGTAIKAVKILGGENFNDQIKAL 120
Query: 303 RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGK- 358
R+ +P+F+V+TP RL ++ +++ +SG+ LL+ D D L + L +I + + +
Sbjct: 121 RN-DPQFVVATPGRLADHITKRSLQLSGLELLIFDEADRILDLGFTEQLKMINEQANHRL 179
Query: 359 PHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGI 418
T++F+ L + V A+ LL +++L+ + N SD ++ L
Sbjct: 180 RQTLLFSATLDHAQVDALSRNLLKKPKQITLS------------AANEQHSDIKQTLYLA 227
Query: 419 QVLDH--AYGDHF 429
LDH A +HF
Sbjct: 228 DHLDHKEALLEHF 240
>gi|295669632|ref|XP_002795364.1| pre-mRNA-processing ATP-dependent RNA helicase prp5
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226285298|gb|EEH40864.1| pre-mRNA-processing ATP-dependent RNA helicase prp5
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 532
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 12/210 (5%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 39 GPIGLVMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIIVCTP 97
Query: 315 ERLLKLVSLKAIDVSG---VSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCL 368
R++ L++ A V+ V+ +V+ DR+ + + I ++ + TV+F+
Sbjct: 98 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILGNVRPQRQTVLFSATF 157
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L + + +SV + I Q V V +++ K ++ + +L Y D
Sbjct: 158 PRNMEALARKTLTKPVEIVVGGRSVVAPE--ITQIVEV-RNEDTKFVRLLALLGDLYADD 214
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
++E + L V + L+ L KGY
Sbjct: 215 -NNEDARTLIFVDRQEAADGLLRDLMHKGY 243
>gi|293609547|ref|ZP_06691849.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|375135371|ref|YP_004996021.1| ATP-dependent RNA helicase RhlB [Acinetobacter calcoaceticus
PHEA-2]
gi|292827999|gb|EFF86362.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325122816|gb|ADY82339.1| ATP-dependent RNA helicase RhlB [Acinetobacter calcoaceticus
PHEA-2]
Length = 389
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 23/224 (10%)
Query: 254 FTG-PFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
F G P L L ++E A ++ S K L F +H V+L G D Q L + + +V
Sbjct: 81 FRGEPRALILAPTRELALQIESDAKFLTKFSNLHLVTLLGGVDFDKQKKQLDANFVDIMV 140
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFND 366
+TP RL+ V K + + + LV+D D L + +++ + P T++F+
Sbjct: 141 ATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRYSPRKEQRQTLMFSA 200
Query: 367 CLTYTSVPAVQNLLLGSIN-RLSLNQSVASQSACIIQSVNVCA-SDEEKILKGIQVLDHA 424
+Y + + L + + Q + + Q V V A D+ ++L+ I
Sbjct: 201 TFSYDVLNLARQWLFEPVTVEIEPEQKTNND---VEQRVYVVAKQDKYRLLQDI------ 251
Query: 425 YGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
EP+ KV+ + + + L LK GY + S I
Sbjct: 252 ----LREEPIDKVMIFANRRDQVRRLYDHLKKDGYRVGMLSGEI 291
>gi|254247856|ref|ZP_04941177.1| hypothetical protein BCPG_02669 [Burkholderia cenocepacia PC184]
gi|124872632|gb|EAY64348.1| hypothetical protein BCPG_02669 [Burkholderia cenocepacia PC184]
Length = 545
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 162 PGLLVLTPTRELAMQVTTAAS---TYGKHLKRLRTVSILGGVAYGQQLM-LLAKNPEILV 217
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 218 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIEDIETIVAATPESRQTMLFSATL 277
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ + LL R+ + Q + S+ A I Q+V+ + K ++LDH D
Sbjct: 278 D-GKIGSLTSRLLKDPERIEIQQRLESR-ANIAQTVHYVDDRDHK----DRLLDHLLRD 330
>gi|78066825|ref|YP_369594.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
gi|77967570|gb|ABB08950.1| DEAD/DEAH box helicase [Burkholderia sp. 383]
Length = 516
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 131 PGLLVLTPTRELAMQVTTAAT---TYGKHLKRLRTVSILGGVAYGQQLM-LLAKNPEILV 186
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 187 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIETIVAATPESRQTMLFSATL 246
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ + LL R+ + Q + S+ A I Q+V+ + K ++LDH D
Sbjct: 247 D-GKIGSLTSRLLKDPERIEIQQRLESR-ANIAQTVHYVDDRDHK----DRLLDHLLRD 299
>gi|332534579|ref|ZP_08410414.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
gi|414070322|ref|ZP_11406308.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. Bsw20308]
gi|332035999|gb|EGI72478.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
gi|410807239|gb|EKS13219.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. Bsw20308]
Length = 442
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 33/253 (13%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETS--GSSSTIVQIAWIVATAADS 243
+E + H G+ Q P + + + + DI S GS T+ A+++
Sbjct: 12 LETQLAHQGITQ--PTDIQAHAVP---TALAGHDIFAQSKTGSGKTL---AFLLPAVQRV 63
Query: 244 IARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGL 302
+ +K S P +L + ++E A +V + + L A I V + G + QI L
Sbjct: 64 MKQK---ALSKRDPRVLIVAPTRELATQVFTQLRLLIAGTAIKAVKILGGENFNDQIKAL 120
Query: 303 RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGK- 358
R+ +P+F+V+TP RL ++ +++ +SG+ LL+ D D L + L +I + + +
Sbjct: 121 RN-DPQFVVATPGRLADHITKRSLQLSGLELLIFDEADRILDLGFTEQLKMINEQANHRL 179
Query: 359 PHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGI 418
T++F+ L + V A+ LL +++L+ + N SD ++ L
Sbjct: 180 RQTLLFSATLDHAQVDALSRNLLKKPKQITLS------------AANEQHSDIKQTLYLA 227
Query: 419 QVLDH--AYGDHF 429
LDH A +HF
Sbjct: 228 DHLDHKEALLEHF 240
>gi|223993165|ref|XP_002286266.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977581|gb|EED95907.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 480
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 120/294 (40%), Gaps = 39/294 (13%)
Query: 184 NAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAA 241
++I+ ++ G E+ P F+ S + W + D++ +GS T +++ +
Sbjct: 55 DSIQKTLKSAGFER--PTFIQS---QAWPIAINGSDMICVAKTGSGKTC---GFLLPSFH 106
Query: 242 DSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQIT 300
K GP +L L ++E A ++ + + GI +V + G+ QI
Sbjct: 107 QYFQSKATANKGGKGPIMLVLAPTRELACQILDETQKFGRPIGIRSVCCYGGSPKYAQIA 166
Query: 301 GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPH 360
L E +++TP RL L+ +K ++S V +V+D D + IR + P
Sbjct: 167 ALERGV-ECVIATPGRLNDLIEMKKANLSNVKFVVLDEADRMLDMGFEPQIRSIMGSVPD 225
Query: 361 TVVFNDCLTYTSVP-AVQNLLL-----------GSINRLSLNQSVASQSACIIQSVNVCA 408
+ L + P +Q L G IN L+ N+ I Q + +C+
Sbjct: 226 STNRQTLLFSATWPKEIQRLAFDFLSDPIQINVGEINVLNANKD-------ITQKIMMCS 278
Query: 409 SDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIST 462
D++ I L D HS KV+ VGK L + L +G+++ +
Sbjct: 279 EDDK-----IDRLKEILTDLKHS---KVIVFVGKKYVAHELANQLWDEGFAVDS 324
>gi|414084773|ref|YP_006993484.1| DEAD/DEAH box helicase [Carnobacterium maltaromaticum LMA28]
gi|412998360|emb|CCO12169.1| DEAD/DEAH box helicase family protein [Carnobacterium
maltaromaticum LMA28]
Length = 397
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
+ + SQE A +V +V K K GI L GA+I Q+ L+ +PE +V T R+L
Sbjct: 68 VIITPSQELAVQVAAVVKEWAKEVGITVQPLIGGASIKRQLEKLKQ-KPEIVVGTAGRIL 126
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ---SISGKPHTVVFN 365
++ +K + + V+ +++D D L + D L+ +R+ I KP F+
Sbjct: 127 EISEMKKLKLHQVATVILDEADQLLQQDQLATVRKVVAKIPNKPQLAFFS 176
>gi|392539060|ref|ZP_10286197.1| DEAD/DEAH box helicase [Pseudoalteromonas marina mano4]
Length = 440
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 108/229 (47%), Gaps = 20/229 (8%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETS--GSSSTIVQIAWIVATAADS 243
+E + H G+ Q P + + + + DI S GS T+ A+++
Sbjct: 12 LETQLAHQGITQ--PTDIQAHAVP---TALAGHDIFAQSKTGSGKTL---AFLLPAVQRV 63
Query: 244 IARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGL 302
+ +K S P +L + ++E A +V + + L A I V + G + QI L
Sbjct: 64 MKQK---ALSKRDPRVLIVAPTRELATQVFTQLRLLIAGTAIKAVKVLGGENFNDQIKAL 120
Query: 303 RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGK- 358
R+ +P+F+V+TP RL V+ +++ +SG+ LL+ D D L + L LI + +
Sbjct: 121 RN-DPQFVVATPGRLADHVTKRSLQLSGLELLIFDEADRILDLGFTEQLKLINDEANHRL 179
Query: 359 PHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC 407
T++F+ L + V A+ LL +++L+ + Q + I Q++ +
Sbjct: 180 RQTLLFSATLDHAQVDALSRNLLKKPKQITLS-AANEQHSDITQTLYLA 227
>gi|401416150|ref|XP_003872570.1| putative ATP-dependent DEAD/H RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488794|emb|CBZ24041.1| putative ATP-dependent DEAD/H RNA helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 685
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 17/150 (11%)
Query: 200 PLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGP 257
P V S G+ S +D+L T +GS T+ ++ AD R EK GP
Sbjct: 70 PFAVQSLGV---PALMSGRDLLLTAKTGSGKTLCYALPLIRHCADQ-PRCEKS----EGP 121
Query: 258 FLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVSTPE 315
L LV +QE A +V ++ L +A G+ V+ + ++ I +++ CE +V+TP
Sbjct: 122 IGLVLVPTQELAMQVFTLLDELGEAAGLRCVASYGSTSLSDNIRHVKAGCE--LMVATPG 179
Query: 316 RLLKLVSL---KAIDVSGVSLLVVDRLDSL 342
RLL L+++ KA+ +S VS ++VD D L
Sbjct: 180 RLLDLLTVNGGKALSLSRVSFVIVDEADRL 209
>gi|119471950|ref|ZP_01614235.1| ATP-dependent RNA helicase, DEAD box family protein
[Alteromonadales bacterium TW-7]
gi|119445208|gb|EAW26499.1| ATP-dependent RNA helicase, DEAD box family protein
[Alteromonadales bacterium TW-7]
Length = 440
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 108/229 (47%), Gaps = 20/229 (8%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETS--GSSSTIVQIAWIVATAADS 243
+E + H G+ Q P + + + + DI S GS T+ A+++
Sbjct: 12 LETQLAHQGITQ--PTDIQAHAVP---TALAGHDIFAQSKTGSGKTL---AFLLPAVQRV 63
Query: 244 IARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGL 302
+ +K S P +L + ++E A +V + + L A I V + G + QI L
Sbjct: 64 MKQK---ALSKRDPRVLIVAPTRELATQVFTQLRLLIAGTAIKAVKVLGGENFNDQIKAL 120
Query: 303 RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGK- 358
R+ +P+F+V+TP RL V+ +++ +SG+ LL+ D D L + L LI + +
Sbjct: 121 RN-DPQFVVATPGRLADHVTKRSLQLSGLELLIFDEADRILDLGFTEQLKLINDEANHRL 179
Query: 359 PHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC 407
T++F+ L + V A+ LL +++L+ + Q + I Q++ +
Sbjct: 180 RQTLLFSATLDHAQVDALSRNLLKKPKQITLS-AANEQHSDITQTLYLA 227
>gi|402566171|ref|YP_006615516.1| DEAD/DEAH box helicase [Burkholderia cepacia GG4]
gi|402247368|gb|AFQ47822.1| DEAD/DEAH box helicase-like protein [Burkholderia cepacia GG4]
Length = 515
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 131 PGLLVLTPTRELAMQVTTAAS---TYGKHLKRLRTVSILGGVAYGQQLM-LLAKNPEILV 186
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 187 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIETIVAATPESRQTMLFSATL 246
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ + LL R+ + Q + S+ A I Q+V+ + K ++LDH D
Sbjct: 247 D-GKIGSLTSRLLKDPERIEIQQRLESR-ANIAQTVHYVDDRDHK----DRLLDHLLRD 299
>gi|340504430|gb|EGR30873.1| hypothetical protein IMG5_122040 [Ichthyophthirius multifiliis]
Length = 510
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 248 EKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCE 306
+KE P L LV ++E A +V+ C KA+ ++ +++ GA+ Q L+ +
Sbjct: 176 QKEKRERKNPVGLILVPTRELANQVQLECAKFGKAYKAYSTAIYGGASRSVQEQHLQK-K 234
Query: 307 PEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
PE +V+TP RL+ V KA+D+ ++ LV+D D +
Sbjct: 235 PEIVVATPGRLIDFVQSKAVDLRTITYLVLDEADRM 270
>gi|392530289|ref|ZP_10277426.1| putative ATP-dependent RNA helicase [Carnobacterium maltaromaticum
ATCC 35586]
Length = 419
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 5/110 (4%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
+ + SQE A +V +V K K GI L GA+I Q+ L+ +PE +V T R+L
Sbjct: 68 VIITPSQELAVQVAAVVKEWAKEVGITVQPLIGGASIKRQLEKLKQ-KPEIVVGTAGRIL 126
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ---SISGKPHTVVFN 365
++ +K + + V+ +++D D L + D L+ +R+ I KP F+
Sbjct: 127 EISEMKKLKLHQVATVILDEADQLLQQDQLATVRKVVAKIPNKPQLAFFS 176
>gi|107028773|ref|YP_625868.1| DEAD/DEAH box helicase-like [Burkholderia cenocepacia AU 1054]
gi|116690068|ref|YP_835691.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
cenocepacia HI2424]
gi|105897937|gb|ABF80895.1| DEAD/DEAH box helicase-like protein [Burkholderia cenocepacia AU
1054]
gi|116648157|gb|ABK08798.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
HI2424]
Length = 516
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 131 PGLLVLTPTRELAMQVTTAAS---TYGKHLKRLRTVSILGGVAYGQQLM-LLAKNPEILV 186
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 187 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIEDIETIVAATPESRQTMLFSATL 246
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ + LL R+ + Q + S+ A I Q+V+ + K ++LDH D
Sbjct: 247 D-GKIGSLTSRLLKDPERIEIQQRLESR-ANIAQTVHYVDDRDHK----DRLLDHLLRD 299
>gi|359456199|ref|ZP_09245387.1| probable DEAD-box ATP-dependent RNA helicase SERP1688
[Pseudoalteromonas sp. BSi20495]
gi|358046759|dbj|GAA81636.1| probable DEAD-box ATP-dependent RNA helicase SERP1688
[Pseudoalteromonas sp. BSi20495]
Length = 442
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 33/253 (13%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETS--GSSSTIVQIAWIVATAADS 243
+E + H G+ Q P + + + + DI S GS T+ A+++
Sbjct: 12 LETQLAHQGITQ--PTDIQAHAVP---TALAGHDIFAQSKTGSGKTL---AFLLPAVQRV 63
Query: 244 IARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGL 302
+ +K S P +L + ++E A +V + + L A I V + G + QI L
Sbjct: 64 MKQK---ALSKRDPRVLIVAPTRELATQVFTQLRLLIAGTAIKAVKILGGENFNDQIKAL 120
Query: 303 RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGK- 358
R+ +P+F+V+TP RL ++ +++ +SG+ LL+ D D L + L +I + + +
Sbjct: 121 RN-DPQFVVATPGRLADHITKRSLQLSGLELLIFDEADRILDLGFTEQLKMINEQANHRL 179
Query: 359 PHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGI 418
T++F+ L + V A+ LL +++L+ + N SD ++ L
Sbjct: 180 RQTLLFSATLDHAQVDALSRNLLKKPKQITLS------------AANEQHSDIKQTLYLA 227
Query: 419 QVLDH--AYGDHF 429
LDH A +HF
Sbjct: 228 DHLDHKEALLEHF 240
>gi|398411885|ref|XP_003857276.1| hypothetical protein MYCGRDRAFT_33937 [Zymoseptoria tritici IPO323]
gi|339477161|gb|EGP92252.1| hypothetical protein MYCGRDRAFT_33937 [Zymoseptoria tritici IPO323]
Length = 1145
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 16/214 (7%)
Query: 253 SFTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLV 311
+ GP L + ++E A ++ CKP LKA G+ V + GA I QI L+ E +V
Sbjct: 567 NLEGPIGLIMAPTRELAVQIHRECKPYLKALGLRGVCAYGGAPIKEQIGELKRGA-EVIV 625
Query: 312 STPERLLKLV---SLKAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFN 365
TP R++ L+ S + ++ VS +V+D D + G + + + +P TV+F+
Sbjct: 626 CTPGRMIDLLAANSGRVTNLRRVSYVVLDEADRMFDMGFEPQITKMLGNIRPDRQTVLFS 685
Query: 366 DCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVL-DHA 424
+ L + L +SV + I Q + V +E K ++ +Q+L D
Sbjct: 686 ATFPKKMESLARKALTKPVEILVGGRSVVAPE--ITQMIEV-RPEETKFVRTLQLLGDLI 742
Query: 425 YGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
GD E + L V + + L KGY
Sbjct: 743 EGD----EEARSLIFVERQETADLIFKQLGKKGY 772
>gi|186476125|ref|YP_001857595.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phymatum STM815]
gi|184192584|gb|ACC70549.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
STM815]
Length = 556
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 18/175 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 129 PGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 184
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--DTLSLIRQSISGKPHTVVFNDCL 368
+TP RL+ + ID+S + +LV+D D L G D + I + T++F+ L
Sbjct: 185 ATPGRLIDHLERGRIDLSQLQMLVLDEADRMLDMGFIDDIDTIVAATPASRQTMLFSATL 244
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDH 423
+ ++ LL R+ + Q + Q I Q+V+ + K ++LDH
Sbjct: 245 D-GKIGSLTGRLLKEPERIEIKQHI-EQRTNIAQTVHYVDDRDHK----DRLLDH 293
>gi|320527160|ref|ZP_08028347.1| DEAD/DEAH box helicase [Solobacterium moorei F0204]
gi|320132488|gb|EFW25031.1| DEAD/DEAH box helicase [Solobacterium moorei F0204]
Length = 448
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 259 LLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
+L + ++E A ++ K L ++ +H V+L G D Q+ LR P ++ TP RL
Sbjct: 67 VLIITPTRELAIQISLEAKLLASYTKVHIVTLIGGMDSDRQLNALRH-RPHIIIGTPGRL 125
Query: 318 LKLVSLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGKPHTVVF----NDCL-T 369
L L + A D+S +SL V+D +D S + + + +R+ I G T+ ND + T
Sbjct: 126 LDLYTQGAFDLSKLSLFVIDEVDQVYSTGQSEEVKQLRKEIHGV-QTICLSATKNDTIQT 184
Query: 370 YTSVPAVQNLLLGSI 384
Y P + +L GS+
Sbjct: 185 YFDTP-FEEVLQGSV 198
>gi|452848275|gb|EME50207.1| hypothetical protein DOTSEDRAFT_68922 [Dothistroma septosporum
NZE10]
Length = 936
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 102/233 (43%), Gaps = 36/233 (15%)
Query: 253 SFTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLV 311
+ GP + + ++E A ++ CKP LKA + V + GA I QI L+ E +V
Sbjct: 362 NLEGPIGIIMAPTRELAVQIHRECKPYLKALSLRGVCAYGGAPIKDQIAELKRGA-EVVV 420
Query: 312 STPERLLKLVSLKA---IDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGKPHTVVFN 365
TP R++ L++ A ++S V+ +V+D D + ++ I +I TV F+
Sbjct: 421 CTPGRMIDLLAANAGRVTNLSRVTYVVMDEADRMFDMGFEPQITKILGNIRPDRQTVTFS 480
Query: 366 DCLTYTSVPAVQNLLLGSINRLSLNQSV-------ASQSACIIQSVNVCASDEEKILKGI 418
+ S+ R +LN+ V + +A I Q + V ++E K + +
Sbjct: 481 ATFPKK---------MESLARKALNKPVEIVVGGRSVVAAEITQLIEV-RTEEMKFRRVL 530
Query: 419 QVLDHAYGD-HFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCIVSH 470
Q+L GD H E + L V + +++ L KGY C+ H
Sbjct: 531 QLL----GDLHERDEDARSLIFVERQETADDMLKELGKKGYP------CVSVH 573
>gi|253702296|ref|YP_003023485.1| DEAD/DEAH box helicase [Geobacter sp. M21]
gi|251777146|gb|ACT19727.1| DEAD/DEAH box helicase domain protein [Geobacter sp. M21]
Length = 381
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 10/156 (6%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF---GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E AA++ V K L + + T ++ G AI+ Q+ L+ E L++TP R
Sbjct: 78 LVLVPTRELAAQIEEVAKQLGSHLEPRVKTGAVFGGVAINPQMIQLKGIE--LLIATPGR 135
Query: 317 LLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAV 376
LL+LV+ ++ +S V+ LV+D D L D ++Q ++ P N + T P V
Sbjct: 136 LLELVAKNSVKLSSVATLVLDEADRLYAEDFQDEMQQILALLPAKRQ-NLLFSATIPPEV 194
Query: 377 QNL---LLGSINRLSLNQSVASQSACIIQSVNVCAS 409
+ L LL R+ + ++ AS++ I Q + + S
Sbjct: 195 ERLAASLLSDPMRIEI-EAKASETELISQQIYLVDS 229
>gi|145476155|ref|XP_001424100.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391163|emb|CAK56702.1| unnamed protein product [Paramecium tetraurelia]
Length = 1238
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 31/185 (16%)
Query: 255 TGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPG-AAIDHQITGLRSCEPEFLVS 312
GP +L LV ++E A ++ S + + + + T+ ++ G +Q L P LV+
Sbjct: 171 NGPQMLILVPTRELAMQIESEIQLFTQNYRLKTLCIYGGINNRKNQFYNLGRF-PNILVA 229
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLT 369
TP RLL + A ++ VS LV+D D L + DT+ I Q I TV F +
Sbjct: 230 TPGRLLDFLREGATTLANVSYLVIDEADRLLELGFEDTIREIVQQIRFDRQTVFF----S 285
Query: 370 YTSVPAVQNLL------------LGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417
T AV++L +G N L++N+++ + C+ Q ++K+ K
Sbjct: 286 ATWPKAVKDLAFDFCQYSPIYVQIGKSN-LTINKNIDQEIICLFQ--------KDKLQKL 336
Query: 418 IQVLD 422
+ +LD
Sbjct: 337 LDILD 341
>gi|315128153|ref|YP_004070156.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
gi|315016666|gb|ADT70004.1| ATP-dependent RNA helicase [Pseudoalteromonas sp. SM9913]
Length = 432
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKA---FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E A +V K A I TV++ G +++ Q+ LR + +V+TP R
Sbjct: 89 LILVPTRELAVQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQALRGGA-DIIVATPGR 147
Query: 317 LLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSV 373
LL L+S AI + VS LV+ DR+ SL + L+ + + K T++F+
Sbjct: 148 LLDLISSNAIKLDKVSTLVLDEADRMLSLGFTEELAELLALMPAKKQTMLFSATFPEQVT 207
Query: 374 PAVQNLL 380
Q LL
Sbjct: 208 QLTQKLL 214
>gi|170733402|ref|YP_001765349.1| DEAD/DEAH box helicase [Burkholderia cenocepacia MC0-3]
gi|169816644|gb|ACA91227.1| DEAD/DEAH box helicase domain protein [Burkholderia cenocepacia
MC0-3]
Length = 514
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 131 PGLLVLTPTRELAMQVTTAAS---TYGKHLKRLRTVSILGGVAYGQQLM-LLAKNPEILV 186
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 187 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIEDIETIVAATPESRQTMLFSATL 246
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ + LL R+ + Q + S+ A I Q+V+ + K ++LDH D
Sbjct: 247 D-GKIGSLTSRLLRDPERIEIQQRLESR-ANIAQTVHYVDDRDHK----DRLLDHLLRD 299
>gi|384201716|ref|YP_005587463.1| superfamily II DNA and RNA helicase [Bifidobacterium longum subsp.
longum KACC 91563]
gi|338754723|gb|AEI97712.1| superfamily II DNA and RNA helicase [Bifidobacterium longum subsp.
longum KACC 91563]
Length = 728
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A ++ V PL FG++T +++ G HQI L++ + +V+ P
Sbjct: 126 PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQIRDLKAG-ADIVVACPG 184
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR---QSISGKPHTVVFNDCLTYTS 372
RL L+ +A+ +S V ++V+D D ++ L ++ + IS ++F+ L +
Sbjct: 185 RLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISPDAQHMLFSATLDH-G 243
Query: 373 VPAVQNLLL 381
V V N L
Sbjct: 244 VDEVVNTFL 252
>gi|326524209|dbj|BAJ97115.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 764
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 18/207 (8%)
Query: 216 SAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
S +DI+ +GS T + ++ D +++EG P + ++E A ++
Sbjct: 250 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG-----PIGVICAPTRELAHQIY 304
Query: 274 SVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVSTPERLLKLVSLKAIDVSGV 331
K K + + +++ G + Q L+S CE +V+TP RL+ L+ +KA+ +
Sbjct: 305 LEAKKFAKPYNLQVAAVYGGVSKFEQFKELKSGCE--IVVATPGRLIDLLKMKALRMFRA 362
Query: 332 SLLVVDRLDSLSKGDTLSLIRQSISG--KP--HTVVFNDCLTYTSVPAVQNLLLGSINRL 387
+ LV+D D + IR SI G +P T++F+ + Y + +L I R+
Sbjct: 363 TYLVLDEADRMFDLGFEPQIR-SIVGQIRPDRQTLLFSATMPYKVERLAREILTDPI-RV 420
Query: 388 SLNQSVASQSACIIQSVNVCASDEEKI 414
++ Q V S + I Q VNV SD EK+
Sbjct: 421 TVGQ-VGSANEDIKQVVNVLPSDAEKM 446
>gi|359438163|ref|ZP_09228201.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20311]
gi|358027117|dbj|GAA64450.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20311]
Length = 434
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKA---FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E A +V K A I TV++ G +++ Q+ LR + +V+TP R
Sbjct: 89 LILVPTRELAVQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQALRGGA-DIIVATPGR 147
Query: 317 LLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSV 373
LL L+S AI + VS LV+ DR+ SL + L+ + + K T++F+
Sbjct: 148 LLDLISSNAIKLDKVSTLVLDEADRMLSLGFTEELAELLTLMPAKKQTMLFSATFPEQVT 207
Query: 374 PAVQNLL 380
Q LL
Sbjct: 208 QLTQELL 214
>gi|281212472|gb|EFA86632.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 728
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%)
Query: 256 GPFLLFLVSSQEKAAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEP-----EF 309
GP LF+ ++E A ++ K K + I T ++ G +T L C E
Sbjct: 326 GPIALFVAPTRELAHQIYLETQKFAKPYKIRTSVIYGG------VTKLLQCRELKAGCEI 379
Query: 310 LVSTPERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFND 366
LV+TP RL+ ++ LKA ++ V+ LV+ DR+ + G + I I T++F+
Sbjct: 380 LVTTPGRLIDMIKLKATKMNRVTYLVLDEADRMFDMGFGPQVQSIVGQIRPDRQTLLFSA 439
Query: 367 CLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEK 413
+N+L+ I R+S+ + S + I Q+V V +S+ EK
Sbjct: 440 TFPPNIEELARNILIDPI-RISIGNT-GSANQDITQNVIVLSSNGEK 484
>gi|161524403|ref|YP_001579415.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|189350842|ref|YP_001946470.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|160341832|gb|ABX14918.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
gi|189334864|dbj|BAG43934.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 505
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 18/190 (9%)
Query: 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQIT 300
R+ + P LL L ++E A +V + +G H TVS+ G A Q+
Sbjct: 114 RRARRPQPVARPGLLVLTPTRELAMQVTTAAS---TYGKHLKRLRTVSILGGVAYGQQLM 170
Query: 301 GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP- 359
L + PE LV+TP RLL + ID+S + +LV+D D + + I + P
Sbjct: 171 -LLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIEDIETIVEATPE 229
Query: 360 --HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417
T++F+ L + ++ + LL R+ + Q + S+ A I Q+V+ + K
Sbjct: 230 SRQTMLFSATLD-GKIGSLTSRLLKDPERIEIQQRLESR-ANIAQTVHYVDDRDHK---- 283
Query: 418 IQVLDHAYGD 427
++LDH D
Sbjct: 284 DRLLDHLLRD 293
>gi|189439512|ref|YP_001954593.1| superfamily II DNA and RNA helicase [Bifidobacterium longum DJO10A]
gi|189427947|gb|ACD98095.1| Superfamily II DNA and RNA helicase [Bifidobacterium longum DJO10A]
Length = 728
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A ++ V PL FG++T +++ G HQI L++ + +V+ P
Sbjct: 126 PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQIRDLKAG-ADIVVACPG 184
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR---QSISGKPHTVVFNDCLTYTS 372
RL L+ +A+ +S V ++V+D D ++ L ++ + IS ++F+ L +
Sbjct: 185 RLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISPDAQHMLFSATLDH-G 243
Query: 373 VPAVQNLLL 381
V V N L
Sbjct: 244 VDEVVNTFL 252
>gi|307129391|ref|YP_003881407.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
gi|306526920|gb|ADM96850.1| ATP-dependent RNA helicase [Dickeya dadantii 3937]
Length = 631
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 17/170 (10%)
Query: 176 SKFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIA 234
+ F L L+A I NA+ G E+ +P+ E + +D+L + + S
Sbjct: 6 TSFASLGLSAPILNALSEMGYEKPSPIQA-----ECIPHLLNGRDVLGMAQTGSG----- 55
Query: 235 WIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPG 292
TAA S+ P LL L ++E A +V C G++ V+L+ G
Sbjct: 56 ---KTAAFSLPLLNNIKADLKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGG 112
Query: 293 AAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
D Q+ LR P+ +V TP RLL + +D+S +S LV+D D +
Sbjct: 113 QRYDVQLRALRQG-PQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEM 161
>gi|374605632|ref|ZP_09678552.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
dendritiformis C454]
gi|374388749|gb|EHQ60151.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
dendritiformis C454]
Length = 427
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 6/108 (5%)
Query: 253 SFTGPFLLFLVSSQEKAAK-VRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLV 311
S+ G + + +QE A + VR + GIH +L GAA++ Q+ LR +P+ +V
Sbjct: 70 SYRGTQAVVIAPTQELAMQIVREAEYYGEGSGIHVAALIGGAALNRQVERLRD-KPQLVV 128
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG---DTLSLIRQSI 355
TP R+ +L+ ++ + + V ++VVD +D L KG DT IR ++
Sbjct: 129 GTPGRIRELIEMRKLKMHEVRMIVVDEVDHLLQKGGAHDTDMAIRSAL 176
>gi|418520233|ref|ZP_13086283.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|410704187|gb|EKQ62672.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
Length = 430
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 24/195 (12%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF---GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E AA+V + L A + +V G++I+ Q+ LR + +V+TP R
Sbjct: 81 LVLVPTRELAAQVEDALRQLAAHLPRRLKSVVATGGSSINPQLLALRGGA-DLVVATPGR 139
Query: 317 LLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSV 373
LL LV A+ ++GV+ LV+ DRL L G L I + + TV+F + T
Sbjct: 140 LLDLVEHNALRLNGVTTLVLDEADRLLELGFGAELDRILALLPAQRQTVLF----SATFP 195
Query: 374 PAVQNLL---LGSINRLSLNQSVASQSACIIQ-SVNVCASDEEKILKGIQVLDHAYGDHF 429
PA+ +L L R++++ + Q+ I Q ++ V A ++L+ + H
Sbjct: 196 PAIASLAKRRLRDPLRITID-ATPEQAPAIAQCAIAVDAGQRTQLLRHLL--------HE 246
Query: 430 HSEPLKVLYIVGKDS 444
H+ P ++++ + S
Sbjct: 247 HAWPQLLVFVASRHS 261
>gi|357112553|ref|XP_003558073.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 24-like
[Brachypodium distachyon]
Length = 767
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 116/255 (45%), Gaps = 24/255 (9%)
Query: 216 SAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
S +DI+ +GS T + ++ D +++EG P + ++E A ++
Sbjct: 250 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEG-----PIGVICAPTRELAHQIY 304
Query: 274 SVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVSTPERLLKLVSLKAIDVSGV 331
K K + + +++ G + Q L++ CE +V+TP RL+ L+ +KA+ +
Sbjct: 305 LEAKKFAKPYNLQVAAVYGGVSKFDQFKELKAGCE--IVVATPGRLIDLLKMKALKMFRA 362
Query: 332 SLLVVDRLDSLSKGDTLSLIRQSISG--KP--HTVVFNDCLTYTSVPAVQNLLLGSINRL 387
+ LV+D D + IR SI G +P T++F+ + Y + +L I R+
Sbjct: 363 TYLVLDEADRMFDLGFEPQIR-SIVGQIRPDRQTLLFSATMPYKVERLAREILSDPI-RV 420
Query: 388 SLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQ 447
++ Q V S + I Q VNV SD EK+ I+ + D VL K ++
Sbjct: 421 TVGQ-VGSANEDIKQVVNVLPSDAEKMPWLIEKMPGMIDDG------DVLVFAAKKARVD 473
Query: 448 NLVSTLKCKGYSIST 462
+ + L +G+ ++
Sbjct: 474 EIENQLNQRGFKVAA 488
>gi|421476562|ref|ZP_15924439.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
gi|400228098|gb|EJO58055.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
Length = 505
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 125 PGLLVLTPTRELAMQVTTAAS---TYGKHLKRLRTVSILGGVAYGQQLM-LLAKNPEILV 180
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I + P T++F+ L
Sbjct: 181 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIEDIETIVEATPESRQTMLFSATL 240
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ + LL R+ + Q + S+ A I Q+V+ + K ++LDH D
Sbjct: 241 D-GKIGSLTSRLLKDPERIEIQQRLESR-ANIAQTVHYVDDRDHK----DRLLDHLLRD 293
>gi|221198351|ref|ZP_03571397.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
gi|221208290|ref|ZP_03581294.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221171938|gb|EEE04381.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221182283|gb|EEE14684.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
Length = 506
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 125 PGLLVLTPTRELAMQVTTAAS---TYGKHLKRLRTVSILGGVAYGQQLM-LLAKNPEILV 180
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I + P T++F+ L
Sbjct: 181 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIEDIETIVEATPESRQTMLFSATL 240
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ + LL R+ + Q + S+ A I Q+V+ + K ++LDH D
Sbjct: 241 D-GKIGSLTSRLLKDPERIEIQQRLESR-ANIAQTVHYVDDRDHK----DRLLDHLLRD 293
>gi|419850338|ref|ZP_14373340.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. longum 35B]
gi|419852073|ref|ZP_14374973.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. longum 2-2B]
gi|386409682|gb|EIJ24519.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. longum 35B]
gi|386411893|gb|EIJ26597.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. longum 2-2B]
Length = 728
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A ++ V PL FG++T +++ G HQI L++ + +V+ P
Sbjct: 126 PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQIRDLKAG-ADIVVACPG 184
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR---QSISGKPHTVVFNDCLTYTS 372
RL L+ +A+ +S V ++V+D D ++ L ++ + IS ++F+ L +
Sbjct: 185 RLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISPDAQHMLFSATLDH-G 243
Query: 373 VPAVQNLLL 381
V V N L
Sbjct: 244 VDEVVNTFL 252
>gi|421870283|ref|ZP_16301918.1| ATP-dependent RNA helicase NGO0650 [Burkholderia cenocepacia H111]
gi|358069809|emb|CCE52796.1| ATP-dependent RNA helicase NGO0650 [Burkholderia cenocepacia H111]
Length = 514
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 131 PGLLVLTPTRELAMQVTTAAS---TYGKHLKRLRTVSILGGVAYGQQLM-LLAKNPEILV 186
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I + P T++F+ L
Sbjct: 187 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIEDIETIVDATPDTRQTMLFSATL 246
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ + LL R+ + Q + S+ A I Q+V+ + K ++LDH D
Sbjct: 247 D-GKIGSLTSRLLKDPERIEIQQRLESR-ANIAQTVHYVDDRDHK----DRLLDHLLRD 299
>gi|46190162|ref|ZP_00121813.2| COG0513: Superfamily II DNA and RNA helicases [Bifidobacterium
longum DJO10A]
Length = 670
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A ++ V PL FG++T +++ G HQI L++ + +V+ P
Sbjct: 110 PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQIRDLKAG-ADIVVACPG 168
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR---QSISGKPHTVVFNDCLTYTS 372
RL L+ +A+ +S V ++V+D D ++ L ++ + IS ++F+ L +
Sbjct: 169 RLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISPDAQHMLFSATLDH-G 227
Query: 373 VPAVQNLLL 381
V V N L
Sbjct: 228 VDEVVNTFL 236
>gi|419847217|ref|ZP_14370400.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. longum 1-6B]
gi|419855288|ref|ZP_14378048.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. longum 44B]
gi|386411368|gb|EIJ26101.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. longum 1-6B]
gi|386415753|gb|EIJ30275.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. longum 44B]
Length = 728
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A ++ V PL FG++T +++ G HQI L++ + +V+ P
Sbjct: 126 PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQIRDLKAG-ADIVVACPG 184
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR---QSISGKPHTVVFNDCLTYTS 372
RL L+ +A+ +S V ++V+D D ++ L ++ + IS ++F+ L +
Sbjct: 185 RLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISPDAQHMLFSATLDH-G 243
Query: 373 VPAVQNLLL 381
V V N L
Sbjct: 244 VDEVVNTFL 252
>gi|197119959|ref|YP_002140386.1| ATP-dependent RNA helicase [Geobacter bemidjiensis Bem]
gi|197089319|gb|ACH40590.1| ATP-dependent RNA helicase [Geobacter bemidjiensis Bem]
Length = 381
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 10/156 (6%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF---GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E AA++ V K L + T ++ G AI+ Q+ L+ E L++TP R
Sbjct: 78 LILVPTRELAAQIEEVAKQLGGHLKPRVKTGAVFGGVAINPQMILLKGIE--LLIATPGR 135
Query: 317 LLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAV 376
L++LV+ ++ +S V+ LV+D D L D ++Q ++ P N + T P V
Sbjct: 136 LIELVAQNSVQLSSVATLVLDEADRLYAEDFQEELQQILALLPSKRQ-NLLFSATFPPEV 194
Query: 377 QNL---LLGSINRLSLNQSVASQSACIIQSVNVCAS 409
+ L LL R+ + ++ A+++ I Q + + S
Sbjct: 195 ERLAASLLTDPMRIEI-EATATEAQLITQQIYLVDS 229
>gi|227545965|ref|ZP_03976014.1| ATP-dependent RNA helicase [Bifidobacterium longum subsp. longum
ATCC 55813]
gi|227213599|gb|EEI81448.1| ATP-dependent RNA helicase [Bifidobacterium longum subsp. infantis
ATCC 55813]
Length = 728
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A ++ V PL FG++T +++ G HQI L++ + +V+ P
Sbjct: 126 PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQIRDLKAG-ADIVVACPG 184
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR---QSISGKPHTVVFNDCLTYTS 372
RL L+ +A+ +S V ++V+D D ++ L ++ + IS ++F+ L +
Sbjct: 185 RLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISPDAQHMLFSATLDH-G 243
Query: 373 VPAVQNLLL 381
V V N L
Sbjct: 244 VDEVVNTFL 252
>gi|418516224|ref|ZP_13082399.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
gi|410707025|gb|EKQ65480.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
Length = 430
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 24/195 (12%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF---GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E AA+V + L A + +V G++I+ Q+ LR + +V+TP R
Sbjct: 81 LVLVPTRELAAQVEDALRQLAAHLPRRLTSVVATGGSSINPQLLALRGGA-DLVVATPGR 139
Query: 317 LLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSV 373
LL LV A+ ++GV+ LV+ DRL L G L I + + TV+F+ T
Sbjct: 140 LLDLVEHNALRLNGVTTLVLDEADRLLELGFGAELDRILALLPAQRQTVLFS----ATFP 195
Query: 374 PAVQNLL---LGSINRLSLNQSVASQSACIIQ-SVNVCASDEEKILKGIQVLDHAYGDHF 429
PA+ +L L R++++ + Q+ I Q ++ V A ++L+ + H
Sbjct: 196 PAIASLAKRRLRDPLRITID-ATPEQAPAIAQCAIAVDAGQRTQLLRHLL--------HE 246
Query: 430 HSEPLKVLYIVGKDS 444
H+ P ++++ + S
Sbjct: 247 HAWPQLLVFVASRHS 261
>gi|322690898|ref|YP_004220468.1| ATP-dependent RNA helicase [Bifidobacterium longum subsp. longum
JCM 1217]
gi|320455754|dbj|BAJ66376.1| putative ATP-dependent RNA helicase [Bifidobacterium longum subsp.
longum JCM 1217]
Length = 728
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A ++ V PL FG++T +++ G HQI L++ + +V+ P
Sbjct: 126 PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQIRDLKAG-ADIVVACPG 184
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR---QSISGKPHTVVFNDCLTYTS 372
RL L+ +A+ +S V ++V+D D ++ L ++ + IS ++F+ L +
Sbjct: 185 RLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISPDAQHMLFSATLDH-G 243
Query: 373 VPAVQNLLL 381
V V N L
Sbjct: 244 VDEVVNTFL 252
>gi|206560480|ref|YP_002231244.1| putative ATP-dependent RNA helicase [Burkholderia cenocepacia
J2315]
gi|444365702|ref|ZP_21165823.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
gi|198036521|emb|CAR52418.1| putative ATP-dependent RNA helicase [Burkholderia cenocepacia
J2315]
gi|443605756|gb|ELT73582.1| DEAD/DEAH box helicase [Burkholderia cenocepacia K56-2Valvano]
Length = 514
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 131 PGLLVLTPTRELAMQVTTAAS---TYGKHLKRLRTVSILGGVAYGQQLM-LLAKNPEILV 186
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I + P T++F+ L
Sbjct: 187 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIEDIETIVDATPDTRQTMLFSATL 246
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ + LL R+ + Q + S+ A I Q+V+ + K ++LDH D
Sbjct: 247 D-GKIGSLTSRLLKDPERIEIQQRLESR-ANIAQTVHYVDDRDHK----DRLLDHLLRD 299
>gi|23465483|ref|NP_696086.1| ATP-dependent RNA helicase [Bifidobacterium longum NCC2705]
gi|23326139|gb|AAN24722.1| possible ATP-dependent RNA helicase [Bifidobacterium longum
NCC2705]
Length = 728
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A ++ V PL FG++T +++ G HQI L++ + +V+ P
Sbjct: 126 PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQIRDLKAG-ADIVVACPG 184
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR---QSISGKPHTVVFNDCLTYTS 372
RL L+ +A+ +S V ++V+D D ++ L ++ + IS ++F+ L +
Sbjct: 185 RLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISPDAQHMLFSATLDH-G 243
Query: 373 VPAVQNLLL 381
V V N L
Sbjct: 244 VDEVVNTFL 252
>gi|379723868|ref|YP_005315999.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus 3016]
gi|378572540|gb|AFC32850.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus 3016]
Length = 510
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 260 LFLVSSQEKAAK-VRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L LV ++E + V++V + K G+ L GA+ID QI LR+ +P+ +V TP R+
Sbjct: 78 LVLVPTRELGMQIVQTVEELTKGTGLRVQQLIGGASIDRQIDKLRT-KPQIVVGTPGRVQ 136
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL 342
+LV L+ + + G+ +VVD +D +
Sbjct: 137 ELVKLRKLKLHGIKTVVVDEVDQV 160
>gi|386726622|ref|YP_006192948.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus K02]
gi|384093747|gb|AFH65183.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus K02]
Length = 479
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 260 LFLVSSQEKAAK-VRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L LV ++E + V++V + K G+ L GA+ID QI LR+ +P+ +V TP R+
Sbjct: 78 LVLVPTRELGMQIVQTVEELTKGTGLRVQQLIGGASIDRQIDKLRT-KPQIVVGTPGRVQ 136
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL 342
+LV L+ + + G+ +VVD +D +
Sbjct: 137 ELVKLRKLKLHGIKTVVVDEVDQV 160
>gi|218192669|gb|EEC75096.1| hypothetical protein OsI_11255 [Oryza sativa Indica Group]
Length = 1023
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 116/255 (45%), Gaps = 24/255 (9%)
Query: 216 SAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
S +DI+ +GS T + ++ D +++EG P + ++E A ++
Sbjct: 267 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEG-----PIGVVCAPTRELAHQIY 321
Query: 274 SVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVSTPERLLKLVSLKAIDVSGV 331
K K + + +++ G + Q L++ CE +++TP RL+ L+ +KA+ +
Sbjct: 322 LEAKKFAKPYNLRVAAVYGGVSKFDQFKELKAGCE--IVIATPGRLIDLLKMKALKMFRA 379
Query: 332 SLLVVDRLDSLSKGDTLSLIRQSISG--KP--HTVVFNDCLTYTSVPAVQNLLLGSINRL 387
+ LV+D D + IR SI G +P T++F+ + Y + +L I R+
Sbjct: 380 TYLVLDEADRMFDLGFEPQIR-SIVGQIRPDRQTLLFSATMPYKVERLAREILTDPI-RV 437
Query: 388 SLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQ 447
++ Q V S + I Q VNV SD EK+ ++ L D VL K ++
Sbjct: 438 TVGQ-VGSANEDIKQVVNVLLSDAEKMPWLLEKLPGMIDDG------DVLVFAAKKARVD 490
Query: 448 NLVSTLKCKGYSIST 462
+ S L +G+ I+
Sbjct: 491 EIESQLNQRGFRIAA 505
>gi|239621986|ref|ZP_04665017.1| ATP-dependent RNA helicase [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|317482249|ref|ZP_07941270.1| DEAD/DEAH box helicase [Bifidobacterium sp. 12_1_47BFAA]
gi|239515177|gb|EEQ55044.1| ATP-dependent RNA helicase [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|316916265|gb|EFV37666.1| DEAD/DEAH box helicase [Bifidobacterium sp. 12_1_47BFAA]
Length = 712
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A ++ V PL FG++T +++ G HQI L++ + +V+ P
Sbjct: 110 PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQIRDLKAG-ADIVVACPG 168
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR---QSISGKPHTVVFNDCLTYTS 372
RL L+ +A+ +S V ++V+D D ++ L ++ + IS ++F+ L +
Sbjct: 169 RLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISPDAQHMLFSATLDH-G 227
Query: 373 VPAVQNLLL 381
V V N L
Sbjct: 228 VDEVVNTFL 236
>gi|441504046|ref|ZP_20986043.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
gi|441428219|gb|ELR65684.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
Length = 446
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 7/161 (4%)
Query: 252 FSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA-IDHQITGLRSCEPEFL 310
F+ P +L L ++E A +V + + L A + +L G + Q+ R +P F+
Sbjct: 69 FTRRDPRVLILTPTRELAKQVFAQLRTLIAGTPYDGALVVGGENFNDQVKAFRK-DPMFV 127
Query: 311 VSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPH----TVVFND 366
V+TP RL + ++ + G+ +L++D D + + +R+ H T++F+
Sbjct: 128 VATPGRLADHLEHRSTHLDGLEMLILDEADRMLDLGFEAQLRRIHEAANHRRRQTLMFSA 187
Query: 367 CLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC 407
L +T V ++ + +L + R+S+ S A Q I Q +C
Sbjct: 188 TLDHTDVASIASDMLNAPKRISIGHS-AEQHTDITQRFMLC 227
>gi|399927884|ref|ZP_10785242.1| Superfamily II DNA and RNA helicase [Myroides injenensis M09-0166]
Length = 371
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L LV ++E A +V K K I T++L G A+ QI L+ P+ +++TP RLL
Sbjct: 76 LVLVPTRELALQVEKSFKDYSKHTAIKTIALFGGVALPPQIKALKQ-NPKIVIATPGRLL 134
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
L+ K + +S +S LV+D D + + I++ +S P T+ F+ +
Sbjct: 135 DLIQQKLVSISNISTLVLDEADQMLDMGFIHDIKKVLSYVPKKRQTLFFSATM 187
>gi|387769316|ref|ZP_10125580.1| cold-shock DEAD-box protein A [Pasteurella bettyae CCUG 2042]
gi|386906949|gb|EIJ71670.1| cold-shock DEAD-box protein A [Pasteurella bettyae CCUG 2042]
Length = 632
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLK--AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
P +L + ++E A +V C+ A GIHTV+L+ G D Q+ LR + +V TP
Sbjct: 75 PQMLVMAPTRELAIQVADACEQFTKGAKGIHTVTLYGGQRYDIQLRALRQGA-QVVVGTP 133
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKG---DTLSLIRQSISGKPHTVVFNDCL 368
R+L + +D+S + +V+D D + + D + + + K T +F+ +
Sbjct: 134 GRILDHIRRGTLDLSELKFIVLDEADEMLRMGFIDDVETVMAELPEKHQTALFSATM 190
>gi|322688929|ref|YP_004208663.1| ATP-dependent RNA helicase [Bifidobacterium longum subsp. infantis
157F]
gi|320460265|dbj|BAJ70885.1| putative ATP-dependent RNA helicase [Bifidobacterium longum subsp.
infantis 157F]
Length = 728
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A ++ V PL FG++T +++ G HQI L++ + +V+ P
Sbjct: 126 PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQIRDLKAG-ADIVVACPG 184
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR---QSISGKPHTVVFNDCLTYTS 372
RL L+ +A+ +S V ++V+D D ++ L ++ + IS ++F+ L +
Sbjct: 185 RLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISPDAQHMLFSATLDH-G 243
Query: 373 VPAVQNLLL 381
V V N L
Sbjct: 244 VDEVVNTFL 252
>gi|384199706|ref|YP_005585449.1| putative ATP-dependent RNA helicase [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|320458658|dbj|BAJ69279.1| putative ATP-dependent RNA helicase [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
Length = 738
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A ++ V PL FG++T +++ G HQI L++ + +V+ P
Sbjct: 126 PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQIRDLKAG-ADIVVACPG 184
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR---QSISGKPHTVVFNDCLTYTS 372
RL L+ +A+ +S V ++V+D D ++ L ++ + IS ++F+ L +
Sbjct: 185 RLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISPDAQHMLFSATLDH-G 243
Query: 373 VPAVQNLLL 381
V V N L
Sbjct: 244 VDEVVNTFL 252
>gi|213692508|ref|YP_002323094.1| DEAD/DEAH box helicase [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|213523969|gb|ACJ52716.1| DEAD/DEAH box helicase domain protein [Bifidobacterium longum
subsp. infantis ATCC 15697 = JCM 1222]
Length = 722
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A ++ V PL FG++T +++ G HQI L++ + +V+ P
Sbjct: 110 PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQIRDLKAG-ADIVVACPG 168
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR---QSISGKPHTVVFNDCLTYTS 372
RL L+ +A+ +S V ++V+D D ++ L ++ + IS ++F+ L +
Sbjct: 169 RLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISPDAQHMLFSATLDH-G 227
Query: 373 VPAVQNLLL 381
V V N L
Sbjct: 228 VDEVVNTFL 236
>gi|390601156|gb|EIN10550.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 966
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 97/216 (44%), Gaps = 22/216 (10%)
Query: 254 FTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVS 312
GP + + ++E A ++ CKP LK + V + G+ I QI ++ E +V
Sbjct: 372 MEGPIGVIMTPTRELAVQIHRECKPFLKVLNLRAVCAYGGSPIKDQIADMKKGA-EIIVC 430
Query: 313 TPERLLKLV---SLKAIDVSGVSLLVVDRLDSL----SKGDTLSLIRQSISGKPHTVVFN 365
TP R++ L+ S + ++ V+ +V+D D + + + +I +I TV+F+
Sbjct: 431 TPGRMIDLLTANSGRVTNLKRVTYIVLDEADRMFDMGFEPQVMKII-NNIRPDRQTVLFS 489
Query: 366 DCLTYTSVPAVQNLLLGSINRLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDH 423
+ P + L I R L +V +S A I+ + ++ K + +++L
Sbjct: 490 -----ATFPKQMDSLARKILRKPLEITVGGRSVVAAEIEQIVEVRPEDTKFTRLLEIL-- 542
Query: 424 AYGDHFHSEP-LKVLYIVGKDSKFQNLVSTLKCKGY 458
G ++ +P + L V + NL+ L +GY
Sbjct: 543 --GQMYNEDPECRTLIFVDRQEAADNLLRELLRRGY 576
>gi|337750837|ref|YP_004644999.1| DEAD/DEAH box helicase [Paenibacillus mucilaginosus KNP414]
gi|336302026|gb|AEI45129.1| DEAD/DEAH box helicase domain-containing protein [Paenibacillus
mucilaginosus KNP414]
Length = 433
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 260 LFLVSSQEKAAK-VRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L LV ++E + V++V + K G+ L GA+ID QI LR+ +P+ +V TP R+
Sbjct: 77 LVLVPTRELGMQIVQTVEELTKGTGLRVQQLIGGASIDRQIEKLRT-KPQIVVGTPGRVQ 135
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL 342
+LV L+ + + G+ +VVD +D +
Sbjct: 136 ELVKLRKLKLHGIKTVVVDEVDQV 159
>gi|88860699|ref|ZP_01135336.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
P-loop hydrolase domain [Pseudoalteromonas tunicata D2]
gi|88817294|gb|EAR27112.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
P-loop hydrolase domain [Pseudoalteromonas tunicata D2]
Length = 431
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 11/151 (7%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF---GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E A +V + K A I TV++ G +++ Q+ LR + +V+TP R
Sbjct: 91 LVLVPTRELATQVANSIKSYAAHFNGAIKTVAVFGGVSVNAQMQALRGGS-DIVVATPGR 149
Query: 317 LLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSV 373
LL L+S AI + VS LV+ DR+ L + LS + + K T++F+
Sbjct: 150 LLDLISSNAIKLDKVSTLVLDEADRMLGLGFTEELSQLLALMPAKKQTLLFSATFPLQVQ 209
Query: 374 PAVQNLLLGSINRLSLNQSVASQSACIIQSV 404
Q+LL + Q +S ++ ++Q V
Sbjct: 210 SLTQSLLTNPVEI----QVQSSDASTVVQRV 236
>gi|221215428|ref|ZP_03588392.1| dead/deah box helicase [Burkholderia multivorans CGD1]
gi|221164612|gb|EED97094.1| dead/deah box helicase [Burkholderia multivorans CGD1]
Length = 506
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 18/190 (9%)
Query: 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQIT 300
R+ + P LL L ++E A +V + +G H TVS+ G A Q+
Sbjct: 114 RRARRPQPVARPGLLVLTPTRELAMQVTTAAS---TYGKHLKRLRTVSILGGVAYGQQLM 170
Query: 301 GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP- 359
L + PE LV+TP RLL + ID+S + +LV+D D + + I + P
Sbjct: 171 -LLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIEDIETIVEATPE 229
Query: 360 --HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417
T++F+ L + ++ + LL R+ + Q + S+ A I Q+V+ + K
Sbjct: 230 SRQTMLFSATLD-GKIGSLTSRLLKDPERIEIQQRLESR-ANIAQTVHYVDDRDHK---- 283
Query: 418 IQVLDHAYGD 427
++LDH D
Sbjct: 284 DRLLDHLLRD 293
>gi|296453983|ref|YP_003661126.1| DEAD/DEAH box helicase domain-containing protein [Bifidobacterium
longum subsp. longum JDM301]
gi|296183414|gb|ADH00296.1| DEAD/DEAH box helicase domain protein [Bifidobacterium longum
subsp. longum JDM301]
Length = 742
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A ++ V PL FG++T +++ G HQI L++ + +V+ P
Sbjct: 126 PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQIRDLKAG-ADIVVACPG 184
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR---QSISGKPHTVVFNDCLTYTS 372
RL L+ +A+ +S V ++V+D D ++ L ++ + IS ++F+ L +
Sbjct: 185 RLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISPDAQHMLFSATLDH-G 243
Query: 373 VPAVQNLLL 381
V V N L
Sbjct: 244 VDEVVNTFL 252
>gi|19075356|ref|NP_587856.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces pombe 972h-]
gi|48474674|sp|Q9P7C7.1|PRP11_SCHPO RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase prp11
gi|7380876|emb|CAB85446.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces pombe]
Length = 1014
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 110/256 (42%), Gaps = 25/256 (9%)
Query: 215 SSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272
+S +D++ +GS TI + + D K EG P + + ++E A ++
Sbjct: 453 TSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEG-----PIAIIMTPTRELAVQI 507
Query: 273 RSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331
CKP LK I + GA I QI L+ E +V TP R++ ++S A V+ +
Sbjct: 508 FRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGA-EIVVCTPGRMIDVLSANAGRVTNL 566
Query: 332 ---SLLVVDRLDSL-SKGDTLSLIR--QSISGKPHTVVFNDCLTYTSVPAVQNLLLGSIN 385
+ LV+D D + G ++R +I TV+F+ + P L +
Sbjct: 567 HRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFS-----ATFPRAMEALARKVL 621
Query: 386 RLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKD 443
+ + +V +S A ++ + +E K + +++L Y + ++ L V +
Sbjct: 622 KKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELLGELYNNQLD---VRTLVFVDRQ 678
Query: 444 SKFQNLVSTLKCKGYS 459
L+S L +GY+
Sbjct: 679 ESADALLSDLMKRGYT 694
>gi|313205812|ref|YP_004044989.1| dead/deah box helicase domain-containing protein [Riemerella
anatipestifer ATCC 11845 = DSM 15868]
gi|383485132|ref|YP_005394044.1| dead/deah box helicase domain protein [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|416111191|ref|ZP_11592448.1| Cold-shock DEAD-box protein A [Riemerella anatipestifer RA-YM]
gi|442315009|ref|YP_007356312.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-2]
gi|312445128|gb|ADQ81483.1| DEAD/DEAH box helicase domain protein [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|315022792|gb|EFT35816.1| Cold-shock DEAD-box protein A [Riemerella anatipestifer RA-YM]
gi|380459817|gb|AFD55501.1| dead/deah box helicase domain protein [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|441483932|gb|AGC40618.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-2]
Length = 554
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 15/121 (12%)
Query: 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-L 342
I +V+++ G++I QI LR +P+ +V TP R++ L++ KA+D S + LV+D D L
Sbjct: 101 IKSVAVYGGSSITDQIRSLRD-KPQIIVGTPGRVIDLINRKALDFSSIHWLVLDEADEML 159
Query: 343 SKG--DTLSLIRQSISGKPHTVVFNDCL---------TYTSVPAVQNLLLGSINRLSLNQ 391
S G D L I T++F+ + +Y + P + +GSIN + N
Sbjct: 160 SMGFKDDLETILSETPETKQTLLFSATMNKEVERISKSYLTNP--HRISVGSINAVKKNI 217
Query: 392 S 392
S
Sbjct: 218 S 218
>gi|261377495|ref|ZP_05982068.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
14685]
gi|269146228|gb|EEZ72646.1| putative ATP-dependent RNA helicase RhlE [Neisseria cinerea ATCC
14685]
Length = 473
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 95/199 (47%), Gaps = 24/199 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+ +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--D 346
GA+ +Q L S + +V+TP RL+ L+ +D + + +L++D D L G D
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFTRLEVLILDEADRMLDMGFID 169
Query: 347 TLSLIRQSISGKPHTVVFN 365
+ I ++ T++F+
Sbjct: 170 DIETIVEATPADRQTLLFS 188
>gi|69244699|ref|ZP_00602963.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Enterococcus faecium DO]
gi|257879382|ref|ZP_05659035.1| helicase [Enterococcus faecium 1,230,933]
gi|257881752|ref|ZP_05661405.1| helicase [Enterococcus faecium 1,231,502]
gi|257890208|ref|ZP_05669861.1| helicase [Enterococcus faecium 1,231,410]
gi|260558824|ref|ZP_05831013.1| helicase [Enterococcus faecium C68]
gi|293560457|ref|ZP_06676949.1| ATP-dependent rna helicase, dead/deah box family [Enterococcus
faecium E1162]
gi|314937854|ref|ZP_07845170.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
gi|314941345|ref|ZP_07848238.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
gi|314950104|ref|ZP_07853390.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
gi|314951355|ref|ZP_07854409.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
gi|314992814|ref|ZP_07858215.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
gi|314997973|ref|ZP_07862869.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
gi|383328101|ref|YP_005353985.1| DEAD/DEAH box helicase [Enterococcus faecium Aus0004]
gi|389867992|ref|YP_006375415.1| ATP-dependent RNA helicase [Enterococcus faecium DO]
gi|415898385|ref|ZP_11551270.1| ATP-dependent rna helicase, dead/deah box family [Enterococcus
faecium E4453]
gi|424789444|ref|ZP_18216098.1| DEAD/DEAH box helicase [Enterococcus faecium V689]
gi|424809961|ref|ZP_18235329.1| DEAD/DEAH box helicase [Enterococcus faecium S447]
gi|424826051|ref|ZP_18250992.1| DEAD/DEAH box helicase [Enterococcus faecium R501]
gi|424859466|ref|ZP_18283474.1| DEAD/DEAH box helicase [Enterococcus faecium R499]
gi|424901144|ref|ZP_18324681.1| DEAD/DEAH box helicase [Enterococcus faecium R497]
gi|424951737|ref|ZP_18366805.1| DEAD/DEAH box helicase [Enterococcus faecium R496]
gi|424955089|ref|ZP_18369949.1| DEAD/DEAH box helicase [Enterococcus faecium R494]
gi|424958671|ref|ZP_18373307.1| DEAD/DEAH box helicase [Enterococcus faecium R446]
gi|424959610|ref|ZP_18374188.1| DEAD/DEAH box helicase [Enterococcus faecium P1986]
gi|424964053|ref|ZP_18378194.1| DEAD/DEAH box helicase [Enterococcus faecium P1190]
gi|424969226|ref|ZP_18382809.1| DEAD/DEAH box helicase [Enterococcus faecium P1140]
gi|424971996|ref|ZP_18385393.1| DEAD/DEAH box helicase [Enterococcus faecium P1139]
gi|424973340|ref|ZP_18386628.1| DEAD/DEAH box helicase [Enterococcus faecium P1137]
gi|424977788|ref|ZP_18390773.1| DEAD/DEAH box helicase [Enterococcus faecium P1123]
gi|424982091|ref|ZP_18394774.1| DEAD/DEAH box helicase [Enterococcus faecium ERV99]
gi|424985806|ref|ZP_18398266.1| DEAD/DEAH box helicase [Enterococcus faecium ERV69]
gi|424988369|ref|ZP_18400691.1| DEAD/DEAH box helicase [Enterococcus faecium ERV38]
gi|424990638|ref|ZP_18402844.1| DEAD/DEAH box helicase [Enterococcus faecium ERV26]
gi|424996380|ref|ZP_18408189.1| DEAD/DEAH box helicase [Enterococcus faecium ERV168]
gi|424998811|ref|ZP_18410474.1| DEAD/DEAH box helicase [Enterococcus faecium ERV165]
gi|425002672|ref|ZP_18414092.1| DEAD/DEAH box helicase [Enterococcus faecium ERV161]
gi|425004816|ref|ZP_18416101.1| DEAD/DEAH box helicase [Enterococcus faecium ERV102]
gi|425007888|ref|ZP_18419003.1| DEAD/DEAH box helicase [Enterococcus faecium ERV1]
gi|425009772|ref|ZP_18420766.1| DEAD/DEAH box helicase [Enterococcus faecium E422]
gi|425014545|ref|ZP_18425219.1| DEAD/DEAH box helicase [Enterococcus faecium E417]
gi|425019147|ref|ZP_18429533.1| DEAD/DEAH box helicase [Enterococcus faecium C621]
gi|425019556|ref|ZP_18429904.1| DEAD/DEAH box helicase [Enterococcus faecium C497]
gi|425023885|ref|ZP_18433980.1| DEAD/DEAH box helicase [Enterococcus faecium C1904]
gi|425031119|ref|ZP_18436262.1| DEAD/DEAH box helicase [Enterococcus faecium 515]
gi|425036637|ref|ZP_18441379.1| DEAD/DEAH box helicase [Enterococcus faecium 514]
gi|425039764|ref|ZP_18444268.1| DEAD/DEAH box helicase [Enterococcus faecium 513]
gi|425043075|ref|ZP_18447344.1| DEAD/DEAH box helicase [Enterococcus faecium 511]
gi|425046428|ref|ZP_18450444.1| DEAD/DEAH box helicase [Enterococcus faecium 510]
gi|425048723|ref|ZP_18452614.1| DEAD/DEAH box helicase [Enterococcus faecium 509]
gi|425052493|ref|ZP_18456098.1| DEAD/DEAH box helicase [Enterococcus faecium 506]
gi|425061055|ref|ZP_18464320.1| DEAD/DEAH box helicase [Enterococcus faecium 503]
gi|430831548|ref|ZP_19449599.1| DEAD/DEAH box helicase [Enterococcus faecium E0333]
gi|430846899|ref|ZP_19464753.1| DEAD/DEAH box helicase [Enterococcus faecium E1133]
gi|430856786|ref|ZP_19474470.1| DEAD/DEAH box helicase [Enterococcus faecium E1392]
gi|431536457|ref|ZP_19517417.1| DEAD/DEAH box helicase [Enterococcus faecium E1731]
gi|431747865|ref|ZP_19536629.1| DEAD/DEAH box helicase [Enterococcus faecium E2297]
gi|431754108|ref|ZP_19542773.1| DEAD/DEAH box helicase [Enterococcus faecium E2883]
gi|431768794|ref|ZP_19557227.1| DEAD/DEAH box helicase [Enterococcus faecium E1321]
gi|431770086|ref|ZP_19558489.1| DEAD/DEAH box helicase [Enterococcus faecium E1644]
gi|431774385|ref|ZP_19562693.1| DEAD/DEAH box helicase [Enterococcus faecium E2369]
gi|431777059|ref|ZP_19565316.1| DEAD/DEAH box helicase [Enterococcus faecium E2560]
gi|431779325|ref|ZP_19567520.1| DEAD/DEAH box helicase [Enterococcus faecium E4389]
gi|431781366|ref|ZP_19569514.1| DEAD/DEAH box helicase [Enterococcus faecium E6012]
gi|431784997|ref|ZP_19573032.1| DEAD/DEAH box helicase [Enterococcus faecium E6045]
gi|68196290|gb|EAN10719.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Enterococcus faecium DO]
gi|257813610|gb|EEV42368.1| helicase [Enterococcus faecium 1,230,933]
gi|257817410|gb|EEV44738.1| helicase [Enterococcus faecium 1,231,502]
gi|257826568|gb|EEV53194.1| helicase [Enterococcus faecium 1,231,410]
gi|260075283|gb|EEW63596.1| helicase [Enterococcus faecium C68]
gi|291605605|gb|EFF35047.1| ATP-dependent rna helicase, dead/deah box family [Enterococcus
faecium E1162]
gi|313588034|gb|EFR66879.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a01]
gi|313592618|gb|EFR71463.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133B]
gi|313596572|gb|EFR75417.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133A]
gi|313599768|gb|EFR78611.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133C]
gi|313642712|gb|EFS07292.1| DEAD/DEAH box helicase [Enterococcus faecium TX0133a04]
gi|313643545|gb|EFS08125.1| DEAD/DEAH box helicase [Enterococcus faecium TX0082]
gi|364090053|gb|EHM32684.1| ATP-dependent rna helicase, dead/deah box family [Enterococcus
faecium E4453]
gi|378937795|gb|AFC62867.1| DEAD-box ATP dependent DNA helicase [Enterococcus faecium Aus0004]
gi|388533241|gb|AFK58433.1| ATP-dependent RNA helicase [Enterococcus faecium DO]
gi|402918194|gb|EJX38908.1| DEAD/DEAH box helicase [Enterococcus faecium S447]
gi|402922124|gb|EJX42529.1| DEAD/DEAH box helicase [Enterococcus faecium V689]
gi|402924720|gb|EJX44912.1| DEAD/DEAH box helicase [Enterococcus faecium R501]
gi|402926498|gb|EJX46534.1| DEAD/DEAH box helicase [Enterococcus faecium R499]
gi|402928958|gb|EJX48764.1| DEAD/DEAH box helicase [Enterococcus faecium R496]
gi|402931313|gb|EJX50899.1| DEAD/DEAH box helicase [Enterococcus faecium R497]
gi|402934976|gb|EJX54269.1| DEAD/DEAH box helicase [Enterococcus faecium R494]
gi|402939568|gb|EJX58473.1| DEAD/DEAH box helicase [Enterococcus faecium R446]
gi|402947467|gb|EJX65675.1| DEAD/DEAH box helicase [Enterococcus faecium P1190]
gi|402949182|gb|EJX67263.1| DEAD/DEAH box helicase [Enterococcus faecium P1140]
gi|402950124|gb|EJX68139.1| DEAD/DEAH box helicase [Enterococcus faecium P1986]
gi|402956935|gb|EJX74358.1| DEAD/DEAH box helicase [Enterococcus faecium P1139]
gi|402958976|gb|EJX76257.1| DEAD/DEAH box helicase [Enterococcus faecium P1137]
gi|402961847|gb|EJX78842.1| DEAD/DEAH box helicase [Enterococcus faecium ERV99]
gi|402964530|gb|EJX81304.1| DEAD/DEAH box helicase [Enterococcus faecium P1123]
gi|402965057|gb|EJX81795.1| DEAD/DEAH box helicase [Enterococcus faecium ERV69]
gi|402972068|gb|EJX88293.1| DEAD/DEAH box helicase [Enterococcus faecium ERV38]
gi|402973862|gb|EJX89949.1| DEAD/DEAH box helicase [Enterococcus faecium ERV168]
gi|402979126|gb|EJX94813.1| DEAD/DEAH box helicase [Enterococcus faecium ERV26]
gi|402981848|gb|EJX97355.1| DEAD/DEAH box helicase [Enterococcus faecium ERV165]
gi|402982855|gb|EJX98292.1| DEAD/DEAH box helicase [Enterococcus faecium ERV161]
gi|402988461|gb|EJY03468.1| DEAD/DEAH box helicase [Enterococcus faecium ERV102]
gi|402994313|gb|EJY08856.1| DEAD/DEAH box helicase [Enterococcus faecium ERV1]
gi|402998612|gb|EJY12861.1| DEAD/DEAH box helicase [Enterococcus faecium E417]
gi|402999192|gb|EJY13394.1| DEAD/DEAH box helicase [Enterococcus faecium C621]
gi|403002026|gb|EJY16039.1| DEAD/DEAH box helicase [Enterococcus faecium E422]
gi|403008493|gb|EJY21997.1| DEAD/DEAH box helicase [Enterococcus faecium C1904]
gi|403011107|gb|EJY24436.1| DEAD/DEAH box helicase [Enterococcus faecium C497]
gi|403014178|gb|EJY27196.1| DEAD/DEAH box helicase [Enterococcus faecium 514]
gi|403014750|gb|EJY27720.1| DEAD/DEAH box helicase [Enterococcus faecium 513]
gi|403016288|gb|EJY29112.1| DEAD/DEAH box helicase [Enterococcus faecium 515]
gi|403021314|gb|EJY33781.1| DEAD/DEAH box helicase [Enterococcus faecium 511]
gi|403024291|gb|EJY36461.1| DEAD/DEAH box helicase [Enterococcus faecium 510]
gi|403030038|gb|EJY41758.1| DEAD/DEAH box helicase [Enterococcus faecium 509]
gi|403034285|gb|EJY45748.1| DEAD/DEAH box helicase [Enterococcus faecium 506]
gi|403041992|gb|EJY52968.1| DEAD/DEAH box helicase [Enterococcus faecium 503]
gi|430481431|gb|ELA58587.1| DEAD/DEAH box helicase [Enterococcus faecium E0333]
gi|430538453|gb|ELA78745.1| DEAD/DEAH box helicase [Enterococcus faecium E1133]
gi|430543899|gb|ELA83951.1| DEAD/DEAH box helicase [Enterococcus faecium E1392]
gi|430594944|gb|ELB32896.1| DEAD/DEAH box helicase [Enterococcus faecium E1731]
gi|430614741|gb|ELB51712.1| DEAD/DEAH box helicase [Enterococcus faecium E2297]
gi|430620031|gb|ELB56834.1| DEAD/DEAH box helicase [Enterococcus faecium E2883]
gi|430628662|gb|ELB65096.1| DEAD/DEAH box helicase [Enterococcus faecium E1321]
gi|430634134|gb|ELB70269.1| DEAD/DEAH box helicase [Enterococcus faecium E2369]
gi|430635839|gb|ELB71918.1| DEAD/DEAH box helicase [Enterococcus faecium E1644]
gi|430640000|gb|ELB75854.1| DEAD/DEAH box helicase [Enterococcus faecium E2560]
gi|430642180|gb|ELB77961.1| DEAD/DEAH box helicase [Enterococcus faecium E4389]
gi|430648553|gb|ELB83959.1| DEAD/DEAH box helicase [Enterococcus faecium E6045]
gi|430649727|gb|ELB85095.1| DEAD/DEAH box helicase [Enterococcus faecium E6012]
Length = 425
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L+ SSQE A +V V + K + SL GA + QI GL+ +PE L+ TP R+
Sbjct: 71 LVIFASSQELAIQVADVAREWGKDKELKVQSLVGGANVKRQIEGLKE-KPEILIGTPGRI 129
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377
L+L+ K I V +V D D L +I Q + P L + S A +
Sbjct: 130 LELMKAKKIKAHQVKTMVFDEADQLFDAGNSQIIDQILHQAPTEY----QLAFFSATADR 185
Query: 378 NLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQ 419
+L +S+ + ++++V A D+ + KG++
Sbjct: 186 SL-----------ESIEKITGKTFETIDVTAEDDSR--KGLR 214
>gi|390369825|ref|XP_792433.3| PREDICTED: ATP-dependent RNA helicase DDX42-like, partial
[Strongylocentrotus purpuratus]
Length = 242
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCE--PEFLVS 312
GP L ++E A ++ K KA+ IH V + G + Q R+CE PE +V+
Sbjct: 44 GPIGLICAPTRELAQQIYMEVKKFGKAYNIHVVCAYGGGNMHEQ---QRACEEGPEVIVA 100
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
TP RL+ LV KA ++ VS L+ D D +
Sbjct: 101 TPGRLIDLVKKKATNLRRVSYLIFDEADRM 130
>gi|256827018|ref|YP_003150977.1| DNA/RNA helicase, superfamily II [Cryptobacterium curtum DSM 15641]
gi|256583161|gb|ACU94295.1| DNA/RNA helicase, superfamily II [Cryptobacterium curtum DSM 15641]
Length = 551
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 69/132 (52%), Gaps = 7/132 (5%)
Query: 239 TAADSIARKEKEGFSF--TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVS-LHPGAAI 295
TAA S+ ++ G + GP LL + ++E A ++ SVC+ + H V+ + G +
Sbjct: 54 TAAFSLPTMDRLGHARHGQGPLLLIVTPTRELALQIESVCRTIAKRSGHRVTCVVGGVSY 113
Query: 296 DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI 355
+ QI LR + L++TP RL+ L++ A ++ V LV+D D + L +R+ +
Sbjct: 114 NPQIDSLRRGT-DVLIATPGRLIDLMNQDAAHLNQVETLVLDEADRMLDMGFLPDMRRIV 172
Query: 356 SGKP---HTVVF 364
+ P T++F
Sbjct: 173 AACPTQRQTLLF 184
>gi|167586824|ref|ZP_02379212.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
Length = 396
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 18/191 (9%)
Query: 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQIT 300
R+ + P LL L ++E A +V + +G H TVS+ G A Q+
Sbjct: 118 RRARRPQPVARPGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM 174
Query: 301 GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP- 359
L + PE LV+TP RLL + ID+S + +LV+D D + + I + P
Sbjct: 175 -LLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIEDIETIVDATPE 233
Query: 360 --HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417
T++F+ L + ++ + LL R+ + Q + S+ A I Q+V+ + K
Sbjct: 234 SRQTMLFSATLD-GKIGSLTSRLLKDPERIEIQQRLESR-ANIAQTVHYVDDRDHK---- 287
Query: 418 IQVLDHAYGDH 428
++LDH D+
Sbjct: 288 DRLLDHLLRDN 298
>gi|294670965|ref|ZP_06735821.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307452|gb|EFE48695.1| hypothetical protein NEIELOOT_02671 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 453
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 21/173 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+ +G E NP + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYE--NPTPIQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D +
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRM 162
>gi|212693252|ref|ZP_03301380.1| hypothetical protein BACDOR_02763 [Bacteroides dorei DSM 17855]
gi|212664203|gb|EEB24775.1| DEAD/DEAH box helicase [Bacteroides dorei DSM 17855]
Length = 461
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 26/164 (15%)
Query: 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDI--LETSGSSSTIVQIAWIVATA 240
+N IEN + + +E+ NP+ I+ WK KD+ L +GS T+ + +V +
Sbjct: 23 INMIENILANLKIERLNPM--QEASIDAWK---EGKDLILLSPTGSGKTLAYLLPLVQSL 77
Query: 241 ADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK----PLKAFGIHTVSLHPGAAID 296
I TG + LV S+E A ++ V K P KA VS + G
Sbjct: 78 KPGI----------TGVQAIVLVPSRELALQIDQVFKSMNTPFKA-----VSCYGGRPAM 122
Query: 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340
+ ++ +P ++ TP R+ +S + D VS+L++D D
Sbjct: 123 EEHRTIKGVQPSVIIGTPGRMNDHLSKQNFDADTVSILIIDEFD 166
>gi|258645792|ref|ZP_05733261.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
DSM 15470]
gi|260403163|gb|EEW96710.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Dialister invisus
DSM 15470]
Length = 510
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDH 297
TAA I EK + GP + L ++E A + L + IH + ++ G I+
Sbjct: 54 TAAFGIPILEKIDTTEKGPQAIVLSPTRELAIQSAEEMNRLAQYLPIHALPIYGGQDIER 113
Query: 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG 357
Q LR +P +V+TP RL+ + ID+S V +LV+D D + + IR ++G
Sbjct: 114 QFRALRK-KPNIIVATPGRLMDHMKRGTIDLSHVQILVLDEGDEMVDMGFIDDIRTILAG 172
Query: 358 KP---HTVVFNDCL 368
P T+ F+ +
Sbjct: 173 MPEERQTMFFSATM 186
>gi|421473380|ref|ZP_15921497.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans ATCC
BAA-247]
gi|400221128|gb|EJO51613.1| DEAD/DEAH box helicase, partial [Burkholderia multivorans ATCC
BAA-247]
Length = 456
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 18/190 (9%)
Query: 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQIT 300
R+ + P LL L ++E A +V + +G H TVS+ G A Q+
Sbjct: 114 RRARRPQPVARPGLLVLTPTRELAMQVTTAAS---TYGKHLKRLRTVSILGGVAYGQQLM 170
Query: 301 GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP- 359
L + PE LV+TP RLL + ID+S + +LV+D D + + I + P
Sbjct: 171 -LLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIEDIETIVEATPE 229
Query: 360 --HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417
T++F+ L + ++ + LL R+ + Q + S+ A I Q+V+ + K
Sbjct: 230 SRQTMLFSATLD-GKIGSLTSRLLKDPERIEIQQRLESR-ANIAQTVHYVDDRDHK---- 283
Query: 418 IQVLDHAYGD 427
++LDH D
Sbjct: 284 DRLLDHLLRD 293
>gi|444361124|ref|ZP_21162267.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia BC7]
gi|443598510|gb|ELT66861.1| DEAD/DEAH box helicase, partial [Burkholderia cenocepacia BC7]
Length = 471
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 18/190 (9%)
Query: 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQIT 300
R+ + P LL L ++E A +V + +G H TVS+ G A Q+
Sbjct: 120 RRARRPQPVARPGLLVLTPTRELAMQVTTAAS---TYGKHLKRLRTVSILGGVAYGQQLM 176
Query: 301 GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP- 359
L + PE LV+TP RLL + ID+S + +LV+D D + + I + P
Sbjct: 177 -LLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIEDIETIVDATPD 235
Query: 360 --HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417
T++F+ L + ++ + LL R+ + Q + S+ A I Q+V+ + K
Sbjct: 236 TRQTMLFSATLD-GKIGSLTSRLLKDPERIEIQQRLESR-ANIAQTVHYVDDRDHK---- 289
Query: 418 IQVLDHAYGD 427
++LDH D
Sbjct: 290 DRLLDHLLRD 299
>gi|312132917|ref|YP_004000256.1| srmb [Bifidobacterium longum subsp. longum BBMN68]
gi|311773893|gb|ADQ03381.1| SrmB [Bifidobacterium longum subsp. longum BBMN68]
Length = 728
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 6/129 (4%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A ++ V PL FG++T +++ G HQI L+ + +V+ P
Sbjct: 126 PRGLVLAPTRELANQINDVLMPLAHTFGMNTTTVYGGVKYIHQIRDLKDG-ADIVVACPG 184
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR---QSISGKPHTVVFNDCLTYTS 372
RL L+ +A+ +S V ++V+D D ++ L ++ + IS ++F+ L +
Sbjct: 185 RLEDLLRQQALTLSSVEVVVIDEADEMADMGFLPPVKRLLEQISPDAQHMLFSATLDH-G 243
Query: 373 VPAVQNLLL 381
V V N L
Sbjct: 244 VDEVVNTFL 252
>gi|295398354|ref|ZP_06808395.1| ATP-dependent RNA helicase [Aerococcus viridans ATCC 11563]
gi|294973394|gb|EFG49180.1| ATP-dependent RNA helicase [Aerococcus viridans ATCC 11563]
Length = 453
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 82/171 (47%), Gaps = 11/171 (6%)
Query: 224 SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPF-LLFLVSSQEKAAKVRSVCKPL-KA 281
+GS T+ A+++ + +A +E + G L+ LV SQE A++V V + +A
Sbjct: 54 TGSGKTL---AYLLPVLSRMVAEREASQGQYNGGLRLIVLVPSQELASQVGDVVQAWARA 110
Query: 282 FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS 341
+ + GA + QI +R P+ +V T R+++L+ + + V V +++D D+
Sbjct: 111 VDFKAMKIIGGANVKRQIEKIRE-RPDIIVGTSGRMIELIDQRKLKVHEVDTIIIDEADA 169
Query: 342 LSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLS 388
L G T L+++ + G+ +F+ + T +LL + L+
Sbjct: 170 LLDEEHIGQTKQLVKK-LPGRAQVALFSATVPDTLAGLASDLLAEPVIELA 219
>gi|433473761|ref|ZP_20431122.1| helicase domain protein [Neisseria meningitidis 97021]
gi|433482323|ref|ZP_20439582.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2006087]
gi|433484306|ref|ZP_20441531.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2002038]
gi|433486575|ref|ZP_20443770.1| helicase domain protein [Neisseria meningitidis 97014]
gi|432210059|gb|ELK66025.1| helicase domain protein [Neisseria meningitidis 97021]
gi|432215573|gb|ELK71460.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2006087]
gi|432220404|gb|ELK76225.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2002038]
gi|432221860|gb|ELK77664.1| helicase domain protein [Neisseria meningitidis 97014]
Length = 462
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 95/199 (47%), Gaps = 24/199 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+ +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--D 346
GA+ +Q L S + +V+TP RL+ L+ +D + + +L++D D L G D
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFID 169
Query: 347 TLSLIRQSISGKPHTVVFN 365
+ I ++ T++F+
Sbjct: 170 DIETIVEATPSDRQTLLFS 188
>gi|403354220|gb|EJY76663.1| RNA helicase, putative [Oxytricha trifallax]
Length = 657
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 11/136 (8%)
Query: 211 WKCYSSAKDIL---ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQE 267
W S +D++ ET + + +V A + ++ GP L L ++E
Sbjct: 102 WSVALSGRDMIGIAETGSGKTLSFLLPALVHVYAQEVPKRGD------GPIALVLAPTRE 155
Query: 268 KAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI 326
A ++ + C+ +A I +++++ G Q LR+ E L++TP RLL + L +
Sbjct: 156 LAMQIETQCRKFAQACKIQSLAIYGGVPKHEQKIALRAGV-EILIATPGRLLDFMELGTV 214
Query: 327 DVSGVSLLVVDRLDSL 342
++ V+ LV+D D +
Sbjct: 215 RLNKVTYLVLDEADRM 230
>gi|294627204|ref|ZP_06705791.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292598443|gb|EFF42593.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 389
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 89/175 (50%), Gaps = 15/175 (8%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF---GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E AA+V + L A + +V G++I+ Q+ LR + +V+TP R
Sbjct: 81 LVLVPTRELAAQVEDTLRQLAAHLPRRLKSVVATGGSSINPQLLALRGGA-DIVVATPGR 139
Query: 317 LLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSV 373
LL LV A+ +S V+ LV+ DRL L G L I + + T++F+ T
Sbjct: 140 LLDLVEHNALRLSEVATLVLDEADRLLELGFGAELDRILALLPAQRQTLLFS----ATFP 195
Query: 374 PAVQNLL---LGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAY 425
PA+ +L L R++++ + A +++ V A ++L+ + +L+HA+
Sbjct: 196 PAIASLAKRRLRDPLRITIDATPEQAPAIAQRAIAVDAGQRTQLLRHL-LLEHAW 249
>gi|358338001|dbj|GAA35819.2| probable ATP-dependent RNA helicase DDX17 [Clonorchis sinensis]
Length = 1557
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 18/162 (11%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL----ETSGSSSTIVQIAWIVATAA 241
I N ++ + E P+ W + S +D++ SG +++ + + A A
Sbjct: 107 ILNVIKKNRWESPTPIQAQGWPVAL-----SGRDLVGIAQTGSGKTASFLLPGLVHAKAQ 161
Query: 242 DSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQIT 300
S+ R + GP +L LV ++E A +V V + ++ G + SL+ G + Q+
Sbjct: 162 PSLRRGD-------GPIVLVLVPTRELAQQVEKVVEEFCSYSGFRSASLYGGTSRGGQMD 214
Query: 301 GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
L + PE +++TP RLL + K ++ + LV+D D +
Sbjct: 215 QL-ARSPEVVIATPGRLLDFLQSKDTNLRRCTYLVLDEADRM 255
>gi|407452524|ref|YP_006724249.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-1]
gi|403313508|gb|AFR36349.1| Superfamily II DNA and RNA helicase [Riemerella anatipestifer
RA-CH-1]
Length = 535
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 15/121 (12%)
Query: 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-L 342
I +V+++ G++I QI LR +P+ +V TP R++ L++ KA+D S + LV+D D L
Sbjct: 82 IKSVAVYGGSSITDQIRSLRD-KPQVIVGTPGRVIDLINRKALDFSSIHWLVLDEADEML 140
Query: 343 SKG--DTLSLIRQSISGKPHTVVFNDCL---------TYTSVPAVQNLLLGSINRLSLNQ 391
S G D L I T++F+ + +Y + P + +GSIN + N
Sbjct: 141 SMGFKDDLETILSETPETKQTLLFSATMNKEVERISKSYLTNP--HRISVGSINAVKKNI 198
Query: 392 S 392
S
Sbjct: 199 S 199
>gi|390992352|ref|ZP_10262588.1| ATP-dependent RNA helicase RhlE [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|372552917|emb|CCF69563.1| ATP-dependent RNA helicase RhlE [Xanthomonas axonopodis pv. punicae
str. LMG 859]
Length = 430
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 17/176 (9%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF---GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E AA+V + L A + +V G++I+ Q+ LR + +V+TP R
Sbjct: 81 LVLVPTRELAAQVEDALRQLAAHLPRRLKSVVATGGSSINPQLLALRGGA-DLVVATPGR 139
Query: 317 LLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSV 373
LL LV A+ ++GV+ LV+ DRL L G L I + + TV+F + T
Sbjct: 140 LLDLVEHNALRLNGVTTLVLDEADRLLELGFGAELDRILALLPAQRQTVLF----SATFP 195
Query: 374 PAVQNLL---LGSINRLSLNQSVASQSACIIQ-SVNVCASDEEKILKGIQVLDHAY 425
PA+ +L L R++++ + Q+ I Q ++ V A ++L+ + + +HA+
Sbjct: 196 PAIASLAKRRLRDPLRITID-ATPEQAPAIAQCAIAVDAGQRTQLLRHL-LQEHAW 249
>gi|431523816|ref|ZP_19516841.1| DEAD/DEAH box helicase [Enterococcus faecium E1634]
gi|430584774|gb|ELB23088.1| DEAD/DEAH box helicase [Enterococcus faecium E1634]
Length = 425
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L+ SSQE A +V V + K + SL GA + QI GL+ +PE L+ TP R+
Sbjct: 71 LVIFASSQELAIQVADVAREWGKDKELKVQSLVGGANVKRQIEGLKK-KPEILIGTPGRI 129
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377
L+L+ K I V +V D D L +I Q + P L + S A +
Sbjct: 130 LELMKAKKIKAHQVKTMVFDEADQLFDAGNSQIIDQILHQAPTEY----QLAFFSATADR 185
Query: 378 NLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQ 419
+L +S+ + ++++V A D+ + KG++
Sbjct: 186 SL-----------ESIEKITGKTFETIDVTAEDDSR--KGLR 214
>gi|430824077|ref|ZP_19442644.1| DEAD/DEAH box helicase [Enterococcus faecium E0120]
gi|430867390|ref|ZP_19482384.1| DEAD/DEAH box helicase [Enterococcus faecium E1574]
gi|431743249|ref|ZP_19532129.1| DEAD/DEAH box helicase [Enterococcus faecium E2071]
gi|430441461|gb|ELA51558.1| DEAD/DEAH box helicase [Enterococcus faecium E0120]
gi|430550401|gb|ELA90197.1| DEAD/DEAH box helicase [Enterococcus faecium E1574]
gi|430607083|gb|ELB44411.1| DEAD/DEAH box helicase [Enterococcus faecium E2071]
Length = 425
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L+ SSQE A +V V + K + SL GA + QI GL+ +PE L+ TP R+
Sbjct: 71 LVIFASSQELAIQVADVAREWGKDKELKVQSLVGGANVKRQIEGLKK-KPEILIGTPGRI 129
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377
L+L+ K I V +V D D L +I Q + P L + S A +
Sbjct: 130 LELMKAKKIKAHQVKTMVFDEADQLFDAGNSQIIDQILHQAPTEY----QLAFFSATADR 185
Query: 378 NLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQ 419
+L +S+ + ++++V A D+ + KG++
Sbjct: 186 SL-----------ESIEKITGKTFETIDVTAEDDSR--KGLR 214
>gi|244539109|dbj|BAH83152.1| ATP-dependent RNA helicase [Candidatus Ishikawaella capsulata
Mpkobe]
Length = 562
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
P +L L ++E A +V C G++ ++L+ G D Q+ GLR P+ +V TP
Sbjct: 75 PQILVLAPTRELAVQVTGACNDFAKHMRGVNVLALYGGQRYDIQLKGLRQG-PQIVVGTP 133
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKG---DTLSLIRQSISGKPHTVVFNDCL 368
RLL + +++S + LV+D D + + + + I +I K TV+F+ +
Sbjct: 134 GRLLDHLKRGTLNLSQLRCLVLDEADEMLRMGFIEDVETIMSNIPSKRQTVLFSATM 190
>gi|257885194|ref|ZP_05664847.1| helicase [Enterococcus faecium 1,231,501]
gi|293553202|ref|ZP_06673839.1| ATP-dependent rna helicase, dead/deah box family [Enterococcus
faecium E1039]
gi|293568282|ref|ZP_06679606.1| ATP-dependent rna helicase, dead/deah box family [Enterococcus
faecium E1071]
gi|406580482|ref|ZP_11055675.1| DEAD/DEAH box helicase [Enterococcus sp. GMD4E]
gi|406582683|ref|ZP_11057781.1| DEAD/DEAH box helicase [Enterococcus sp. GMD3E]
gi|406584974|ref|ZP_11059970.1| DEAD/DEAH box helicase [Enterococcus sp. GMD2E]
gi|406590357|ref|ZP_11064726.1| DEAD/DEAH box helicase [Enterococcus sp. GMD1E]
gi|410937034|ref|ZP_11368896.1| ATP-dependent RNA helicase [Enterococcus sp. GMD5E]
gi|416130919|ref|ZP_11597582.1| ATP-dependent rna helicase, dead/deah box family [Enterococcus
faecium E4452]
gi|425058752|ref|ZP_18462128.1| DEAD/DEAH box helicase [Enterococcus faecium 504]
gi|427395398|ref|ZP_18888320.1| hypothetical protein HMPREF9307_00496 [Enterococcus durans
FB129-CNAB-4]
gi|430821326|ref|ZP_19439937.1| DEAD/DEAH box helicase [Enterococcus faecium E0045]
gi|430829497|ref|ZP_19447590.1| DEAD/DEAH box helicase [Enterococcus faecium E0269]
gi|430839101|ref|ZP_19457043.1| DEAD/DEAH box helicase [Enterococcus faecium E0688]
gi|430844765|ref|ZP_19462662.1| DEAD/DEAH box helicase [Enterococcus faecium E1050]
gi|430853471|ref|ZP_19471199.1| DEAD/DEAH box helicase [Enterococcus faecium E1258]
gi|430859688|ref|ZP_19477297.1| DEAD/DEAH box helicase [Enterococcus faecium E1552]
gi|430862440|ref|ZP_19479757.1| DEAD/DEAH box helicase [Enterococcus faecium E1573]
gi|430869826|ref|ZP_19483026.1| DEAD/DEAH box helicase [Enterococcus faecium E1575]
gi|430963164|ref|ZP_19487456.1| DEAD/DEAH box helicase [Enterococcus faecium E1576]
gi|431011082|ref|ZP_19489826.1| DEAD/DEAH box helicase [Enterococcus faecium E1578]
gi|431237075|ref|ZP_19503218.1| DEAD/DEAH box helicase [Enterococcus faecium E1622]
gi|431264010|ref|ZP_19505898.1| DEAD/DEAH box helicase [Enterococcus faecium E1623]
gi|431382754|ref|ZP_19511347.1| DEAD/DEAH box helicase [Enterococcus faecium E1627]
gi|431745487|ref|ZP_19534331.1| DEAD/DEAH box helicase [Enterococcus faecium E2134]
gi|447913343|ref|YP_007394755.1| ATP-dependent RNA helicase YfmL [Enterococcus faecium NRRL B-2354]
gi|257821046|gb|EEV48180.1| helicase [Enterococcus faecium 1,231,501]
gi|291588994|gb|EFF20818.1| ATP-dependent rna helicase, dead/deah box family [Enterococcus
faecium E1071]
gi|291602612|gb|EFF32827.1| ATP-dependent rna helicase, dead/deah box family [Enterococcus
faecium E1039]
gi|364093794|gb|EHM36030.1| ATP-dependent rna helicase, dead/deah box family [Enterococcus
faecium E4452]
gi|403037607|gb|EJY48872.1| DEAD/DEAH box helicase [Enterococcus faecium 504]
gi|404453859|gb|EKA00891.1| DEAD/DEAH box helicase [Enterococcus sp. GMD4E]
gi|404457673|gb|EKA04203.1| DEAD/DEAH box helicase [Enterococcus sp. GMD3E]
gi|404463193|gb|EKA08889.1| DEAD/DEAH box helicase [Enterococcus sp. GMD2E]
gi|404469426|gb|EKA14232.1| DEAD/DEAH box helicase [Enterococcus sp. GMD1E]
gi|410734627|gb|EKQ76546.1| ATP-dependent RNA helicase [Enterococcus sp. GMD5E]
gi|425723898|gb|EKU86784.1| hypothetical protein HMPREF9307_00496 [Enterococcus durans
FB129-CNAB-4]
gi|430438589|gb|ELA49006.1| DEAD/DEAH box helicase [Enterococcus faecium E0045]
gi|430480936|gb|ELA58107.1| DEAD/DEAH box helicase [Enterococcus faecium E0269]
gi|430491098|gb|ELA67580.1| DEAD/DEAH box helicase [Enterococcus faecium E0688]
gi|430496196|gb|ELA72301.1| DEAD/DEAH box helicase [Enterococcus faecium E1050]
gi|430540552|gb|ELA80754.1| DEAD/DEAH box helicase [Enterococcus faecium E1258]
gi|430543225|gb|ELA83300.1| DEAD/DEAH box helicase [Enterococcus faecium E1552]
gi|430549018|gb|ELA88865.1| DEAD/DEAH box helicase [Enterococcus faecium E1573]
gi|430555589|gb|ELA95126.1| DEAD/DEAH box helicase [Enterococcus faecium E1576]
gi|430559515|gb|ELA98865.1| DEAD/DEAH box helicase [Enterococcus faecium E1575]
gi|430560104|gb|ELA99410.1| DEAD/DEAH box helicase [Enterococcus faecium E1578]
gi|430572639|gb|ELB11489.1| DEAD/DEAH box helicase [Enterococcus faecium E1622]
gi|430576446|gb|ELB15097.1| DEAD/DEAH box helicase [Enterococcus faecium E1623]
gi|430581125|gb|ELB19572.1| DEAD/DEAH box helicase [Enterococcus faecium E1627]
gi|430610243|gb|ELB47395.1| DEAD/DEAH box helicase [Enterococcus faecium E2134]
gi|445189052|gb|AGE30694.1| ATP-dependent RNA helicase YfmL [Enterococcus faecium NRRL B-2354]
Length = 425
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L+ SSQE A +V V + K + SL GA + QI GL+ +PE L+ TP R+
Sbjct: 71 LVIFASSQELAIQVADVAREWGKDKELKVQSLVGGANVKRQIEGLKK-KPEILIGTPGRI 129
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377
L+L+ K I V +V D D L +I Q + P L + S A +
Sbjct: 130 LELMKAKKIKAHQVKTMVFDEADQLFDAGNSQIIDQILHQAPTEY----QLAFFSATADR 185
Query: 378 NLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQ 419
+L +S+ + ++++V A D+ + KG++
Sbjct: 186 SL-----------ESIEKITGKTFETIDVTAEDDSR--KGLR 214
>gi|261206534|ref|ZP_05921234.1| helicase [Enterococcus faecium TC 6]
gi|289565444|ref|ZP_06445893.1| helicase [Enterococcus faecium D344SRF]
gi|294614694|ref|ZP_06694596.1| ATP-dependent rna helicase, dead/deah box family [Enterococcus
faecium E1636]
gi|430826935|ref|ZP_19445103.1| DEAD/DEAH box helicase [Enterococcus faecium E0164]
gi|430851033|ref|ZP_19468789.1| DEAD/DEAH box helicase [Enterococcus faecium E1185]
gi|431186000|ref|ZP_19500063.1| DEAD/DEAH box helicase [Enterococcus faecium E1620]
gi|431677810|ref|ZP_19524408.1| DEAD/DEAH box helicase [Enterococcus faecium E1904]
gi|431765937|ref|ZP_19554436.1| DEAD/DEAH box helicase [Enterococcus faecium E4215]
gi|260079244|gb|EEW66935.1| helicase [Enterococcus faecium TC 6]
gi|289162773|gb|EFD10624.1| helicase [Enterococcus faecium D344SRF]
gi|291592432|gb|EFF24039.1| ATP-dependent rna helicase, dead/deah box family [Enterococcus
faecium E1636]
gi|430444481|gb|ELA54319.1| DEAD/DEAH box helicase [Enterococcus faecium E0164]
gi|430534790|gb|ELA75225.1| DEAD/DEAH box helicase [Enterococcus faecium E1185]
gi|430572985|gb|ELB11820.1| DEAD/DEAH box helicase [Enterococcus faecium E1620]
gi|430599303|gb|ELB37014.1| DEAD/DEAH box helicase [Enterococcus faecium E1904]
gi|430627380|gb|ELB63882.1| DEAD/DEAH box helicase [Enterococcus faecium E4215]
Length = 425
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L+ SSQE A +V V + K + SL GA + QI GL+ +PE L+ TP R+
Sbjct: 71 LVIFASSQELAIQVADVAREWGKDKELKVQSLVGGANVKRQIEGLKK-KPEILIGTPGRI 129
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377
L+L+ K I V +V D D L +I Q + P L + S A +
Sbjct: 130 LELMKAKKIKAHQVKTMVFDEADQLFDAGNSQIIDQILHQAPTEY----QLAFFSATADR 185
Query: 378 NLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQ 419
+L +S+ + ++++V A D+ + KG++
Sbjct: 186 SL-----------ESIEKITGKTFETIDVTAEDDSR--KGLR 214
>gi|251791029|ref|YP_003005750.1| ATP-dependent RNA helicase DeaD [Dickeya zeae Ech1591]
gi|247539650|gb|ACT08271.1| DEAD/DEAH box helicase domain protein [Dickeya zeae Ech1591]
Length = 624
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 17/170 (10%)
Query: 176 SKFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIA 234
+ F L L+A I NA+ G E+ +P+ E + +D+L + + S
Sbjct: 6 TSFASLGLSAPILNALSEMGYEKPSPIQA-----ECIPHLLNGRDVLGMAQTGSG----- 55
Query: 235 WIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPG 292
TAA S+ P LL L ++E A +V C G++ V+L+ G
Sbjct: 56 ---KTAAFSLPLLNNIKADLKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGG 112
Query: 293 AAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
D Q+ LR P+ +V TP RLL + +D+S +S LV+D D +
Sbjct: 113 QRYDVQLRALRQG-PQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEM 161
>gi|334144556|ref|YP_004537712.1| DEAD/DEAH box helicase domain-containing protein
[Thioalkalimicrobium cyclicum ALM1]
gi|333965467|gb|AEG32233.1| DEAD/DEAH box helicase domain protein [Thioalkalimicrobium cyclicum
ALM1]
Length = 413
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 250 EGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPE 308
+G+S P L L ++E A ++R V K L + + +V++ G A D Q L + +
Sbjct: 68 QGYS-PNPRALLLAPTRELALQIRQVVKSLSRHLDLRSVAITGGLAQDKQ-RALLTQPYQ 125
Query: 309 FLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
L++TP RLL L+ AID+S + L+++D D +
Sbjct: 126 ILIATPGRLLNLIEQDAIDLSDLELVMIDEADRM 159
>gi|384485449|gb|EIE77629.1| hypothetical protein RO3G_02333 [Rhizopus delemar RA 99-880]
Length = 1089
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 94/213 (44%), Gaps = 18/213 (8%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGL-RSCEPEFLVST 313
GP + + ++E A ++ CKP LK + V + G+ I QI L R C E +V T
Sbjct: 526 GPMAIIMTPTRELATQIHKECKPFLKVLNLRAVCAYGGSPIKDQIADLKRGC--EIIVCT 583
Query: 314 PERLLKLV---SLKAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDC 367
P R++ L+ S + ++ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 584 PGRMIDLLCANSGRVTNLRRVTYMVMDEADRMFDMGFEPQVMKIVNNVRPNRQTVLFS-- 641
Query: 368 LTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEE--KILKGIQVLDHAY 425
+ P L + + L +V +S + EE K ++ +++L +
Sbjct: 642 ---ATFPRQMEALARKVLKKPLEITVGGRSVVCDDVDQIVEVREENTKFVRLLEILGKLF 698
Query: 426 GDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
D +++ V + NL+ L +GY
Sbjct: 699 HDEGEDNASAIIF-VDRHEAADNLLRDLMRRGY 730
>gi|269987038|gb|EEZ93313.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 435
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 91/196 (46%), Gaps = 25/196 (12%)
Query: 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276
KD++ S + S + A V +SI + E++ P ++E A +V V
Sbjct: 37 GKDVVVKSKTGSG--KTAAFVIPILNSIEKNERQAAMIITP-------TRELALQVTEVV 87
Query: 277 KPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335
+ + + + V+++ GA+I++QI +R+ ++ TP RL+ L+ + ++ + LV
Sbjct: 88 REIGRHMQLKAVTIYGGASINYQIREIRNG-ANIIIGTPGRLIDLMKRRELNTDSIRFLV 146
Query: 336 VDRLD-SLSKG--DTLSLIRQSISGKPHTVVFND---------CLTYTSVPAVQNLLLG- 382
+D +D L G D + I + K T+ F+ L YT+ P N+ G
Sbjct: 147 LDEVDIMLDMGFIDDIKYILSKLPKKRQTMFFSATIPEEIKHITLNYTNNPINVNIDAGE 206
Query: 383 -SINRLSLNQSVASQS 397
++N + S+AS S
Sbjct: 207 VTVNTIQHFYSIASGS 222
>gi|392556906|ref|ZP_10304043.1| ATP-dependent RNA helicase [Pseudoalteromonas undina NCIMB 2128]
Length = 432
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKA---FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E A +V K A I TV++ G +++ Q+ LR + +V+TP R
Sbjct: 89 LILVPTRELAVQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQALRGGA-DIIVATPGR 147
Query: 317 LLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSV 373
LL L+S AI + V+ LV+ DR+ SL + L+ + + K T++F+
Sbjct: 148 LLDLISSNAIKLDKVTTLVLDEADRMLSLGFTEELAELLALMPAKKQTMLFSATFPEQVT 207
Query: 374 PAVQNLL 380
Q LL
Sbjct: 208 QLTQELL 214
>gi|359450970|ref|ZP_09240386.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20480]
gi|358043191|dbj|GAA76635.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20480]
Length = 435
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKA---FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E A +V K A I TV++ G +++ Q+ LR + +V+TP R
Sbjct: 89 LILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQALRGGA-DIIVATPGR 147
Query: 317 LLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSV 373
LL L+S AI + V+ LV+ DR+ SL + L+ + + K T++F+
Sbjct: 148 LLDLISSNAIKLDKVTTLVLDEADRMLSLGFTEELTELLALMPAKKQTMLFSATFPEQVT 207
Query: 374 PAVQNLL 380
Q LL
Sbjct: 208 QLTQELL 214
>gi|431290548|ref|ZP_19506683.1| DEAD/DEAH box helicase [Enterococcus faecium E1626]
gi|430582648|gb|ELB21070.1| DEAD/DEAH box helicase [Enterococcus faecium E1626]
Length = 425
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L+ SSQE A +V V + K + SL GA + QI GL+ +PE L+ TP R+
Sbjct: 71 LVIFASSQELAIQVADVAREWGKDKELKVQSLVGGANVKRQIEGLKK-KPEILIGTPGRI 129
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377
L+L+ K I V +V D D L +I Q + P L + S A +
Sbjct: 130 LELMKAKKIKAHQVKTMVFDEADQLFDAGNSQIIDQILHQAPTEY----QLAFFSATADR 185
Query: 378 NLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQ 419
+L +S+ + ++++V A D+ + KG++
Sbjct: 186 SL-----------ESIEKITGKTFETIDVTAEDDSR--KGLR 214
>gi|298571703|gb|ADI87855.1| hypothetical protein AKSOIL_0347 [uncultured bacterium Ak20-3]
Length = 527
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P +L LV ++E A +V+ G++++++ G ++ Q+ LR P+ +V+TP
Sbjct: 107 PKVLVLVPTRELALQVQETFAAFGHNLGVNSIAIIGGVSVGQQMVNLRRRSPQVVVATPG 166
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RLL ++ I++S + L++D D +
Sbjct: 167 RLLDILEQGGINLSSIHTLILDEADRM 193
>gi|256847869|ref|ZP_05553314.1| ATP-dependent RNA helicase [Lactobacillus coleohominis 101-4-CHN]
gi|256715558|gb|EEU30534.1| ATP-dependent RNA helicase [Lactobacillus coleohominis 101-4-CHN]
Length = 437
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVST 313
TG ++ L SQE A + V + GI SL GA + Q+ L+ P+ +V T
Sbjct: 60 TGIQIVVLEPSQELALQTARVMREWAGLMGIKVQSLTGGANLRRQVEHLKKGHPDIVVGT 119
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLI 351
P R+L L+ + + + + LV+D D L + DT +++
Sbjct: 120 PGRILHLLDSRHLKLKHLKTLVIDEADDLLRDDTQAVV 157
>gi|227550474|ref|ZP_03980523.1| ATP-dependent RNA helicase [Enterococcus faecium TX1330]
gi|257897124|ref|ZP_05676777.1| helicase [Enterococcus faecium Com12]
gi|293377346|ref|ZP_06623550.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
gi|431763895|ref|ZP_19552443.1| DEAD/DEAH box helicase [Enterococcus faecium E3548]
gi|227180375|gb|EEI61347.1| ATP-dependent RNA helicase [Enterococcus faecium TX1330]
gi|257833689|gb|EEV60110.1| helicase [Enterococcus faecium Com12]
gi|292644038|gb|EFF62144.1| DEAD/DEAH box helicase [Enterococcus faecium PC4.1]
gi|430621719|gb|ELB58471.1| DEAD/DEAH box helicase [Enterococcus faecium E3548]
Length = 425
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L+ SSQE A +V V + K + SL GA + QI GL+ +PE L+ TP R+
Sbjct: 71 LVIFASSQELAIQVADVAREWGKDKELKVQSLVGGANVKRQIEGLKK-KPEILIGTPGRI 129
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377
L+L+ K I V +V D D L +I Q + P L + S A +
Sbjct: 130 LELMKAKKIKAHQVKTMVFDEADQLFDAGNSQIIDQILHQAPTEY----QLAFFSATADR 185
Query: 378 NLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQ 419
+L +S+ + ++++V A D+ + KG++
Sbjct: 186 SL-----------ESIEKITGKTFETIDVTAEDDSR--KGLR 214
>gi|167563223|ref|ZP_02356139.1| DEAD/DEAH box helicase domain protein [Burkholderia oklahomensis
EO147]
gi|167570404|ref|ZP_02363278.1| DEAD/DEAH box helicase domain protein [Burkholderia oklahomensis
C6786]
Length = 509
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 132 PGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 187
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 188 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIETIVAATPATRQTMLFSATL 247
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ LL R+ + Q + S++ I Q+V+ + K ++LDH D
Sbjct: 248 D-GKIGSLTGRLLKDPERIEIQQRLESRT-NIAQTVHYVDDRDHK----DRLLDHLLRD 300
>gi|378729404|gb|EHY55863.1| hypothetical protein HMPREF1120_03978 [Exophiala dermatitidis
NIH/UT8656]
Length = 1216
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 97/224 (43%), Gaps = 15/224 (6%)
Query: 254 FTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVS 312
GP L L ++E A ++ CKP LKA + V + GA I QI L+ E +V
Sbjct: 648 LDGPIGLVLSPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIADLKRGA-EIVVC 706
Query: 313 TPERLLKLVSL---KAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGKPHTVVFND 366
TP R++ L++ + ++ V+ +V+D D + + I +I TV+F+
Sbjct: 707 TPGRMIDLLAANGGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSNIRPDRQTVLFSA 766
Query: 367 CLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYG 426
+ L I + +SV + I Q V V + K ++ +++L Y
Sbjct: 767 TFPRQMEALARKTLSKPIEIVVGGRSVVAPE--ITQIVEV-REESTKFVRLLELLGKLYE 823
Query: 427 DHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
D +E +VL V + L+ L +GY SI G + I
Sbjct: 824 DD-KNEDDRVLIFVDRQESADGLLRDLMKRGYPCMSIHGGKDQI 866
>gi|430833713|ref|ZP_19451724.1| DEAD/DEAH box helicase [Enterococcus faecium E0679]
gi|430486118|gb|ELA62986.1| DEAD/DEAH box helicase [Enterococcus faecium E0679]
Length = 425
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L+ SSQE A +V V + K + SL GA + QI GL+ +PE L+ TP R+
Sbjct: 71 LVIFASSQELAIQVADVAREWGKDKELKVQSLVGGANVKRQIEGLKK-KPEILIGTPGRI 129
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377
L+L+ K I V +V D D L +I Q + P L + S A +
Sbjct: 130 LELMKAKKIKAHQVKTMVFDEADQLFDAGNSQIIDQILHQAPTEY----QLAFFSATADR 185
Query: 378 NLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQ 419
+L +S+ + ++++V A D+ + KG++
Sbjct: 186 SL-----------ESIEKITGKTFETIDVTAEDDSR--KGLR 214
>gi|431594960|ref|ZP_19522066.1| DEAD/DEAH box helicase [Enterococcus faecium E1861]
gi|430590886|gb|ELB28932.1| DEAD/DEAH box helicase [Enterococcus faecium E1861]
Length = 425
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L+ SSQE A +V V + K + SL GA + QI GL+ +PE L+ TP R+
Sbjct: 71 LVIFASSQELAIQVADVAREWGKDKELKVQSLVGGANVKRQIEGLKK-KPEILIGTPGRI 129
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377
L+L+ K I V +V D D L +I Q + P L + S A +
Sbjct: 130 LELMKAKKIKAHQVKTMVFDEADQLFDAGNSQIIDQILHQAPTEY----QLAFFSATADR 185
Query: 378 NLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQ 419
+L +S+ + ++++V A D+ + KG++
Sbjct: 186 SL-----------ESIEKITGKTFETIDVTAEDDSR--KGLR 214
>gi|293571717|ref|ZP_06682736.1| ATP-dependent rna helicase, dead/deah box family [Enterococcus
faecium E980]
gi|430840734|ref|ZP_19458657.1| DEAD/DEAH box helicase [Enterococcus faecium E1007]
gi|431066296|ref|ZP_19493919.1| DEAD/DEAH box helicase [Enterococcus faecium E1604]
gi|431099340|ref|ZP_19496506.1| DEAD/DEAH box helicase [Enterococcus faecium E1613]
gi|431738274|ref|ZP_19527219.1| DEAD/DEAH box helicase [Enterococcus faecium E1972]
gi|431741875|ref|ZP_19530775.1| DEAD/DEAH box helicase [Enterococcus faecium E2039]
gi|291608174|gb|EFF37477.1| ATP-dependent rna helicase, dead/deah box family [Enterococcus
faecium E980]
gi|430494940|gb|ELA71158.1| DEAD/DEAH box helicase [Enterococcus faecium E1007]
gi|430568335|gb|ELB07383.1| DEAD/DEAH box helicase [Enterococcus faecium E1604]
gi|430570841|gb|ELB09780.1| DEAD/DEAH box helicase [Enterococcus faecium E1613]
gi|430597712|gb|ELB35495.1| DEAD/DEAH box helicase [Enterococcus faecium E1972]
gi|430601028|gb|ELB38650.1| DEAD/DEAH box helicase [Enterococcus faecium E2039]
Length = 425
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L+ SSQE A +V V + K + SL GA + QI GL+ +PE L+ TP R+
Sbjct: 71 LVIFASSQELAIQVADVAREWGKDKELKVQSLVGGANVKRQIEGLKK-KPEILIGTPGRI 129
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377
L+L+ K I V +V D D L +I Q + P L + S A +
Sbjct: 130 LELMKAKKIKAHQVKTMVFDEADQLFDAGNSQIIDQILHQAPTEY----QLAFFSATADR 185
Query: 378 NLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQ 419
+L +S+ + ++++V A D+ + KG++
Sbjct: 186 SL-----------ESIEKITGKTFETIDVTAEDDSR--KGLR 214
>gi|430837023|ref|ZP_19454999.1| DEAD/DEAH box helicase [Enterococcus faecium E0680]
gi|430487804|gb|ELA64512.1| DEAD/DEAH box helicase [Enterococcus faecium E0680]
Length = 425
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L+ SSQE A +V V + K + SL GA + QI GL+ +PE L+ TP R+
Sbjct: 71 LVIFASSQELAIQVADVAREWGKDKELKVQSLVGGANVKRQIEGLKK-KPEILIGTPGRI 129
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377
L+L+ K I V +V D D L +I Q + P L + S A +
Sbjct: 130 LELMKAKKIKAHQVKTMVFDEADQLFDAGNSQIIDQILHQAPTEY----QLAFFSATADR 185
Query: 378 NLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQ 419
+L +S+ + ++++V A D+ + KG++
Sbjct: 186 SL-----------ESIEKITGKTFETIDVTAEDDSR--KGLR 214
>gi|421563568|ref|ZP_16009387.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM2795]
gi|421907098|ref|ZP_16336986.1| DEAD-box ATP-dependent RNA helicase 42 [Neisseria meningitidis
alpha704]
gi|393292062|emb|CCI72959.1| DEAD-box ATP-dependent RNA helicase 42 [Neisseria meningitidis
alpha704]
gi|402341264|gb|EJU76451.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM2795]
Length = 457
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 95/199 (47%), Gaps = 24/199 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+ +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--D 346
GA+ +Q L S + +V+TP RL+ L+ +D + + +L++D D L G D
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRMLDMGFID 169
Query: 347 TLSLIRQSISGKPHTVVFN 365
+ I ++ T++F+
Sbjct: 170 DIETIVEATPSDRQTLLFS 188
>gi|90408914|ref|ZP_01217050.1| putative ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
gi|90309973|gb|EAS38122.1| putative ATP-dependent RNA helicase [Psychromonas sp. CNPT3]
Length = 431
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A + V +K++ +H TV++ G + + Q+ LR + LV+T
Sbjct: 93 LILVPTRELA---KQVADSIKSYAVHFNGAIKTVAVFGGVSANTQMLALRGGT-DILVAT 148
Query: 314 PERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTY 370
P RLL L+S AI + V LV+ DR+ SL D LS + + K T++F+
Sbjct: 149 PGRLLDLISSNAIKLDRVQCLVLDEADRMLSLGFTDELSALLALLPKKKQTLLFSATFPE 208
Query: 371 TSVPAVQNLL 380
Q LL
Sbjct: 209 QVQALTQELL 218
>gi|257888501|ref|ZP_05668154.1| helicase [Enterococcus faecium 1,141,733]
gi|424763064|ref|ZP_18190543.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Enterococcus faecium TX1337RF]
gi|431031524|ref|ZP_19490698.1| DEAD/DEAH box helicase [Enterococcus faecium E1590]
gi|257824555|gb|EEV51487.1| helicase [Enterococcus faecium 1,141,733]
gi|402423531|gb|EJV55744.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Enterococcus faecium TX1337RF]
gi|430564934|gb|ELB04109.1| DEAD/DEAH box helicase [Enterococcus faecium E1590]
Length = 425
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L+ SSQE A +V V + K + SL GA + QI GL+ +PE L+ TP R+
Sbjct: 71 LVIFASSQELAIQVADVAREWGKDKELKVQSLVGGANVKRQIEGLKK-KPEILIGTPGRI 129
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377
L+L+ K I V +V D D L +I Q + P L + S A +
Sbjct: 130 LELMKAKKIKAHQVKTMVFDEADQLFDAGNSQIIDQILHQAPTEY----QLAFFSATADR 185
Query: 378 NLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQ 419
+L +S+ + ++++V A D+ + KG++
Sbjct: 186 SL-----------ESIEKITGKTFETIDVTAEDDSR--KGLR 214
>gi|90577843|ref|ZP_01233654.1| putative ATP-dependent RNA helicase [Photobacterium angustum S14]
gi|90440929|gb|EAS66109.1| putative ATP-dependent RNA helicase [Photobacterium angustum S14]
Length = 446
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 95/199 (47%), Gaps = 15/199 (7%)
Query: 216 SAKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
+ KDIL +S GS T+ + A + R + F+ P +L L ++E A +V
Sbjct: 37 AGKDILASSKTGSGKTLA----FLLPAMQRMYRSKP--FTRRDPRVLILTPTRELAKQVF 90
Query: 274 SVCKPLKAFGIHTVSLHPGAA-IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332
+ + L A + +L G + Q+ LR+ +P F+V+TP RL + ++ + G+
Sbjct: 91 AQLRTLNAGTPYDGTLIVGGENFNDQVKALRN-DPMFVVATPGRLADHLEHRSTRLDGLE 149
Query: 333 LLVVDRLDSLSKGDTLSLIRQSISGKPH----TVVFNDCLTYTSVPAVQNLLLGSINRLS 388
+L++D D + + +R+ H T++F+ L ++ V + + +L + R+S
Sbjct: 150 MLILDEADRMLDLGFEAQLRRINEAANHRRRQTLMFSATLDHSDVVEIASEMLDNPKRIS 209
Query: 389 LNQSVASQSACIIQSVNVC 407
+ S A + I Q +C
Sbjct: 210 IGHS-AEEHKDITQRFILC 227
>gi|21241215|ref|NP_640797.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
306]
gi|21106527|gb|AAM35333.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citri str.
306]
Length = 430
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 17/176 (9%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF---GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E AA+V + L A + +V G++I+ Q+ LR + +V+TP R
Sbjct: 81 LVLVPTRELAAQVEDALRQLAAHLPRRLKSVVATGGSSINPQLLALRGGA-DLVVATPGR 139
Query: 317 LLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSV 373
LL LV A+ ++GV+ LV+ DRL L G L I + + TV+F + T
Sbjct: 140 LLDLVEHNALRLNGVTTLVLDEADRLLELGFGAELDRILALLPAQRQTVLF----SATFP 195
Query: 374 PAVQNLL---LGSINRLSLNQSVASQSACIIQ-SVNVCASDEEKILKGIQVLDHAY 425
PA+ +L L R++++ + Q+ I Q ++ V A ++L+ + + +HA+
Sbjct: 196 PAIASLAKRRLRDPLRVTID-ATPEQAPAIAQCAIAVDAGQRTQLLRHL-LQEHAW 249
>gi|295397627|ref|ZP_06807702.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
gi|294974090|gb|EFG49842.1| ATP-dependent RNA helicase DeaD [Aerococcus viridans ATCC 11563]
Length = 509
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L + ++E A + L F GIHT +++ GA+I HQI L+ P ++ TP R+L
Sbjct: 72 LIIEPTRELAVQTGEELYRLGKFKGIHTTTVYGGASIGHQIKLLKK-NPPVVIGTPGRIL 130
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQ 353
L+ + ++ V LV+D D + K D S+IR+
Sbjct: 131 DLIKRGVLKLNNVETLVLDEADEMLKMGFVEDIESIIRE 169
>gi|358379845|gb|EHK17524.1| hypothetical protein TRIVIDRAFT_112589, partial [Trichoderma virens
Gv29-8]
Length = 1252
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 107/234 (45%), Gaps = 22/234 (9%)
Query: 247 KEKEGFSFT-GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRS 304
K++E T GP L + ++E A ++ CKP LK + V + GA I QI L+
Sbjct: 687 KDQEPLKDTDGPIGLIMTPTRELATQIHRDCKPFLKMMNLRAVCAYGGAPIRDQIAELKR 746
Query: 305 CEPEFLVSTPERLLKLVSL---KAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP- 359
E +V TP R++ L++ + ++ V+ +V+D D + G +++ + +P
Sbjct: 747 GA-EIIVCTPGRMIDLLAANQGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIFANMRPD 805
Query: 360 -HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEE--KILK 416
T++F+ ++P + + L + + + +V +S + + EE K ++
Sbjct: 806 RQTILFS-----ATMPRLIDSLTKKVLKSPIEITVGGRSVVAKEIEQIVEIREESTKFVR 860
Query: 417 GIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+++L Y E + L V + K +L+ L KGY SI G + +
Sbjct: 861 VLELLGELYD---KDEDARSLIFVERQEKADDLLKELMQKGYPCMSIHGGKDQV 911
>gi|258651049|ref|YP_003200205.1| DEAD/DEAH box helicase [Nakamurella multipartita DSM 44233]
gi|258554274|gb|ACV77216.1| DEAD/DEAH box helicase domain protein [Nakamurella multipartita DSM
44233]
Length = 392
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L+ ++E A +V +PL KA G+ T+ + G +Q LRS + +++ P
Sbjct: 85 PRGLILLPTRELALQVARTVEPLAKAAGLRTMVVFGGVGYGNQTAALRSGV-DIVIACPG 143
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
RL LV+ +A D+SG+ + V+D D ++ L ++R+ + P
Sbjct: 144 RLEDLVNQRACDLSGIEVTVLDEADHMADLGFLPVVRRLLRATP 187
>gi|453089161|gb|EMF17201.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 1160
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 14/214 (6%)
Query: 253 SFTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLV 311
+ GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V
Sbjct: 580 NLEGPIGLIMAPTRELAVQIHRECKPYLKALNLRGVCAYGGAPIKDQIAELKRGA-EVVV 638
Query: 312 STPERLLKLVSL---KAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KP--HTVVFN 365
TP RL+ L++ + ++ V+ +V+D D + I++ + +P TV+F+
Sbjct: 639 CTPGRLIDLLAANQGRVTNLRRVTYVVLDEADRMFDMGFEPQIQRVLGNVRPDRQTVLFS 698
Query: 366 DCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAY 425
+ L I L +SV +A I Q V V S++ K + +++L +
Sbjct: 699 ATFPKKMESLARKALNKPIEILVGGRSVV--AAEITQIVEV-RSEDTKFRRVLELLGNL- 754
Query: 426 GDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459
H E + L V + +L L KGYS
Sbjct: 755 --HEGDEDARSLIFVERQETSDHLFKELNKKGYS 786
>gi|333030261|ref|ZP_08458322.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
18011]
gi|332740858|gb|EGJ71340.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
18011]
Length = 442
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLK 319
L LV S+E A +V V LK+ G ++V + G +I + L + P LV TP R+L
Sbjct: 68 LILVPSRELAQQVNRVFSSLKS-GFNSVCAYGGHSIQEEKNSLLTGSPHVLVGTPGRILD 126
Query: 320 LVSLKAIDVSGVSLLVVDRLD 340
++ +DVS + LL++D D
Sbjct: 127 HMNRGNVDVSDIELLIIDEFD 147
>gi|89075608|ref|ZP_01162009.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
gi|89048615|gb|EAR54188.1| putative ATP-dependent RNA helicase [Photobacterium sp. SKA34]
Length = 446
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 95/199 (47%), Gaps = 15/199 (7%)
Query: 216 SAKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
+ KDIL +S GS T+ + A + R + F+ P +L L ++E A +V
Sbjct: 37 AGKDILASSKTGSGKTLA----FLLPAMQRMYRSKP--FTRRDPRVLILTPTRELAKQVF 90
Query: 274 SVCKPLKAFGIHTVSLHPGAA-IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332
+ + L A + +L G + Q+ LR+ +P F+V+TP RL + ++ + G+
Sbjct: 91 AQLRTLNAGTPYDGTLIVGGENFNDQVKALRN-DPMFVVATPGRLADHLEHRSTHLDGLE 149
Query: 333 LLVVDRLDSLSKGDTLSLIRQSISGKPH----TVVFNDCLTYTSVPAVQNLLLGSINRLS 388
+L++D D + + +R+ H T++F+ L ++ V + + +L + R+S
Sbjct: 150 MLILDEADRILDLGFEAQLRRINEAANHRRRQTLMFSATLDHSDVVEIASEMLDNPKRIS 209
Query: 389 LNQSVASQSACIIQSVNVC 407
+ S A + I Q +C
Sbjct: 210 IGHS-AEEHKDITQRFILC 227
>gi|225075877|ref|ZP_03719076.1| hypothetical protein NEIFLAOT_00900 [Neisseria flavescens
NRL30031/H210]
gi|224952823|gb|EEG34032.1| hypothetical protein NEIFLAOT_00900 [Neisseria flavescens
NRL30031/H210]
Length = 463
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 24/199 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+ +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--D 346
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D L G D
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFID 169
Query: 347 TLSLIRQSISGKPHTVVFN 365
+ I ++ T++F+
Sbjct: 170 DIETIVEATPADRQTLLFS 188
>gi|161870238|ref|YP_001599408.1| ATP-dependent RNA helicase [Neisseria meningitidis 053442]
gi|161595791|gb|ABX73451.1| ATP-dependent RNA helicase, putative [Neisseria meningitidis
053442]
Length = 462
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 24/199 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+ +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQKLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--D 346
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D L G D
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFID 169
Query: 347 TLSLIRQSISGKPHTVVFN 365
+ I ++ T++F+
Sbjct: 170 DIETIVEATPSDRQTLLFS 188
>gi|418288548|ref|ZP_12901023.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NM233]
gi|418290793|ref|ZP_12902906.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NM220]
gi|372201002|gb|EHP14985.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NM220]
gi|372201680|gb|EHP15573.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NM233]
Length = 462
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 24/199 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+ +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQKLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--D 346
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D L G D
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFID 169
Query: 347 TLSLIRQSISGKPHTVVFN 365
+ I ++ T++F+
Sbjct: 170 DIETIVEATPSDRQTLLFS 188
>gi|300778148|ref|ZP_07088006.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
gi|300503658|gb|EFK34798.1| ATP-dependent RNA helicase RhlE [Chryseobacterium gleum ATCC 35910]
Length = 380
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 11/90 (12%)
Query: 259 LLFLVSSQEKAAKVRSVCKPLKAFG------IHTVSLHPGAAIDHQITGLRSCEPEFLVS 312
+L LV ++E A ++ V KAF I T++++ G +I+ Q+ G+ E L++
Sbjct: 76 VLILVPTRELAIQIDEV---FKAFTGNLKREIRTMAVYGGVSINPQMKGMFGVE--VLIA 130
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
TP RLL L+ A+ +SG+ LV+D D +
Sbjct: 131 TPGRLLDLIDHNALSISGIRHLVIDEADKM 160
>gi|431446032|ref|ZP_19513714.1| DEAD/DEAH box helicase [Enterococcus faecium E1630]
gi|431760594|ref|ZP_19549191.1| DEAD/DEAH box helicase [Enterococcus faecium E3346]
gi|430585676|gb|ELB23948.1| DEAD/DEAH box helicase [Enterococcus faecium E1630]
gi|430623679|gb|ELB60357.1| DEAD/DEAH box helicase [Enterococcus faecium E3346]
Length = 425
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L+ SSQE A +V V + K + SL GA + QI GL+ +PE L+ TP R+
Sbjct: 71 LVIFASSQELAIQVADVAREWGKDKELKVQSLVGGANVKRQIEGLKK-KPEILIGTPGRI 129
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377
L+L+ K I V +V D D L +I Q + P L + S A +
Sbjct: 130 LELMKAKKIKAHQVKTMVFDEADQLFDAGNSQIIDQILHQAPTEY----QLAFFSATADR 185
Query: 378 NLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQ 419
+L +S+ + ++++V A D+ + KG++
Sbjct: 186 SL-----------ESIEKITGKTFETIDVTAEDDSR--KGLR 214
>gi|336393594|ref|ZP_08574993.1| putative ATP-dependent RNA helicase [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 419
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L +QE A + R+ + KA G+ ++ GA I QI L+ +PE LV+TP RL
Sbjct: 65 LLILAPAQELAMQERTAIQLFAKAAGLKIQAVAGGANIRRQIERLKQ-KPEVLVATPGRL 123
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377
L+L+ + + + + +V+D D L ++ + R + P + T +P +
Sbjct: 124 LELIDQRKVKMHKLQTIVIDEADKLLTDESREMTRDVVRRAPGETQLA-FFSATKIPVLD 182
Query: 378 NL 379
L
Sbjct: 183 EL 184
>gi|218675982|ref|YP_002394801.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
LGP32]
gi|218324250|emb|CAV25533.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
LGP32]
Length = 447
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 99/239 (41%), Gaps = 25/239 (10%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYS----------SAKDILETS--GSSSTIVQI 233
+E+ + + DN L N +F K + KD+L +S GS T+ +
Sbjct: 1 MESPLHFKDLGLDNRLLKNLKHYDFKKATEIQSKAIPVAIAGKDLLASSKTGSGKTLAFV 60
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPG 292
++ A + A FS P + L ++E A +V + L + G
Sbjct: 61 LPMIHKALKTKA------FSAKDPRGVILAPTRELAKQVYGELRSMLGGLSYEATLILGG 114
Query: 293 AAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR 352
+ Q+ LR P F+V+TP RL + +++ + GV L++D D + +R
Sbjct: 115 ENFNDQVKALRKY-PRFIVATPGRLADHLEHRSLFLDGVETLILDEADRMLDLGFAPELR 173
Query: 353 QSISGKPH----TVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC 407
+ + H T++F+ L + V + N +L S R+S+ S Q I Q +C
Sbjct: 174 RIANAAKHRRRQTLMFSATLDHAEVNDIANEMLDSPKRISVGVS-NEQHLDITQKFYLC 231
>gi|425056569|ref|ZP_18460020.1| DEAD/DEAH box helicase [Enterococcus faecium 505]
gi|403031599|gb|EJY43199.1| DEAD/DEAH box helicase [Enterococcus faecium 505]
Length = 425
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L+ SSQE A +V V + K + SL GA + QI GL+ +PE L+ TP R+
Sbjct: 71 LVIFASSQELAIQVADVAREWGKDKELKVQSLVGGANVKRQIEGLKK-KPEILIGTPGRI 129
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377
L+L+ K I V +V D D L +I Q + P L + S A +
Sbjct: 130 LELMKAKKIKAHQVKTMVFDEADQLFDAGNSQIIDQILHQAPTEY----QLAFFSATADR 185
Query: 378 NLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQ 419
+L +S+ + ++++V A D+ + KG++
Sbjct: 186 SL-----------ESIEKITGKTFETIDVTAEDDSR--KGLR 214
>gi|119469744|ref|ZP_01612613.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
P-loop hydrolase domain [Alteromonadales bacterium TW-7]
gi|119446991|gb|EAW28262.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
P-loop hydrolase domain [Alteromonadales bacterium TW-7]
Length = 435
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKA---FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E A +V K A I TV++ G +++ Q+ LR + +V+TP R
Sbjct: 89 LILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQALRGGA-DIIVATPGR 147
Query: 317 LLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSV 373
LL L+S AI + V+ LV+ DR+ SL + L+ + + K T++F+
Sbjct: 148 LLDLISSNAIKLDKVTTLVLDEADRMLSLGFTEELAELLALMPAKKQTMLFSATFPEQVT 207
Query: 374 PAVQNLL 380
Q LL
Sbjct: 208 QLTQKLL 214
>gi|271499180|ref|YP_003332205.1| DEAD/DEAH box helicase domain-containing protein [Dickeya dadantii
Ech586]
gi|270342735|gb|ACZ75500.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech586]
Length = 624
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 17/170 (10%)
Query: 176 SKFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIA 234
+ F L L+A I NA+ G E+ +P+ E + +D+L + + S
Sbjct: 6 TSFASLGLSAPILNALSEMGYEKPSPIQA-----ECIPHLLNGRDVLGMAQTGSG----- 55
Query: 235 WIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPG 292
TAA S+ P LL L ++E A +V C G++ V+L+ G
Sbjct: 56 ---KTAAFSLPLLNNIKADLKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGG 112
Query: 293 AAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
D Q+ LR P+ +V TP RLL + +D+S +S LV+D D +
Sbjct: 113 QRYDVQLRALRQG-PQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEM 161
>gi|86144589|ref|ZP_01062921.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
MED222]
gi|85837488|gb|EAQ55600.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio sp.
MED222]
Length = 443
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 87/199 (43%), Gaps = 15/199 (7%)
Query: 216 SAKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
+ KD+L +S GS T+ + ++ A + A FS P + L ++E A +V
Sbjct: 37 AGKDLLASSKTGSGKTLAFVLPMIHKALKTKA------FSAKDPRGVILAPTRELAKQVY 90
Query: 274 SVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332
+ L + G + Q+ LR P F+V+TP RL + +++ + GV
Sbjct: 91 GELRSMLGGLSYEATLILGGENFNDQVKALRKY-PRFIVATPGRLADHLEHRSLFLDGVE 149
Query: 333 LLVVDRLDSLSKGDTLSLIRQSISGKPH----TVVFNDCLTYTSVPAVQNLLLGSINRLS 388
L++D D + +R+ + H T++F+ L + V + N +L S R+S
Sbjct: 150 TLILDEADRMLDLGFAPELRRIANAAKHRRRQTLMFSATLDHAEVNDIANEMLDSPKRIS 209
Query: 389 LNQSVASQSACIIQSVNVC 407
+ S Q I Q +C
Sbjct: 210 VGVS-NEQHLDITQKFYLC 227
>gi|257783884|ref|YP_003179101.1| DEAD/DEAH box helicase [Atopobium parvulum DSM 20469]
gi|257472391|gb|ACV50510.1| DEAD/DEAH box helicase domain protein [Atopobium parvulum DSM
20469]
Length = 450
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 97/211 (45%), Gaps = 19/211 (9%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGL-RSCEPEFLVSTP 314
P L + ++E AA++ +V K + + G V + GA HQI L + C+ LV+TP
Sbjct: 105 PRALIVTPTRELAAQIDNVAKSVCASTGQQAVIVTGGAHYKHQIAALQKGCD--VLVATP 162
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--DTLSLIRQSISGKPHTVVFNDCLTYT 371
RL+ L+ K + + +LV+D D L G ++ I + + T++F+ L
Sbjct: 163 GRLIDLLDKKHTSLEDIQVLVLDEADRMLDMGFWPSVHRIMEQLPKAHQTLLFSATLP-A 221
Query: 372 SVPAVQNLLLGSINRLSLNQSVASQSACIIQS--VNVCASDEEKILKGIQVLDHAYGDHF 429
S+ + + LL R+ + ++ Q+A I+ +V + ++LK A D F
Sbjct: 222 SITSTIDALLKDPERIEIART--GQTAATIEQHLCSVTQGQKPQLLK-------ALIDSF 272
Query: 430 HSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460
P +VL S+ ++ LK G +
Sbjct: 273 DPAPERVLVFCRTKSRVDSIYKNLKAAGLKV 303
>gi|406699116|gb|EKD02333.1| hypothetical protein A1Q2_03389 [Trichosporon asahii var. asahii
CBS 8904]
Length = 437
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 127/289 (43%), Gaps = 44/289 (15%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL---ET-SGSSSTIVQIAWIVATAA 241
+ + +R G ++ +P+ +W + S +D++ ET SG + + A + A
Sbjct: 122 VMSEIRAMGFKEPSPIQCQAWPMAL-----SGRDVVAIAETGSGKTISFALPAMVHINAQ 176
Query: 242 DSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQIT 300
+A + GP +L L ++E A ++++ C K+ I +++ GA QI
Sbjct: 177 PLLAPGD-------GPIVLILAPTRELAVQIQAECTKFGKSSRIRNTAVYGGAPKGAQIR 229
Query: 301 GL-RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-K 358
L R CE +V+TP RL+ ++ ++ V+ LV+D D + IR+ +S +
Sbjct: 230 DLQRGCE--IVVATPGRLIDMLESGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIR 287
Query: 359 P--HTVVFNDCLTYTSVPAVQNLL-------LGSINRLSLNQSVASQSACIIQSVNVCAS 409
P T++F+ Q+ L +GS + L+ N +VA Q V VC
Sbjct: 288 PDRQTLLFSATWPKDVQRLAQDFLNDYIQVNIGSED-LTANHNVA-------QHVTVCTD 339
Query: 410 DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
+++ + +L H D E KVL VG +L L+ G+
Sbjct: 340 YDKRSM----LLKHL--DQISRENAKVLIFVGTKRVADDLTKFLRQDGW 382
>gi|336383448|gb|EGO24597.1| hypothetical protein SERLADRAFT_449372 [Serpula lacrymans var.
lacrymans S7.9]
Length = 487
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFG----IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
GP L L ++E A +++ C FG I +++ GA QI L+ E ++
Sbjct: 134 GPIALVLAPTRELAVQIQQECT---KFGSSSRIRNTAIYGGAPKGPQIRDLQRGV-EVVI 189
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KP--HTVVFNDCL 368
+TP RL+ ++ + ++ ++ LV+D D + IR+ +S +P T++F+
Sbjct: 190 ATPGRLIDMLETQKTNLRRITYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLMFSATW 249
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
V + N L + ++++ + + I Q V VC SD EK K I+ L D
Sbjct: 250 P-KDVQKLANDFLKDMIQVNIGSMELTANHNIQQIVEVC-SDFEKRAKLIKHL-----DQ 302
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
+E KVL VG ++ L+ G+
Sbjct: 303 ISAENAKVLIFVGTKRVADDITKYLRQDGW 332
>gi|294667681|ref|ZP_06732893.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292602521|gb|EFF45960.1| ATP-dependent RNA helicase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 430
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 88/175 (50%), Gaps = 15/175 (8%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF---GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E AA+V + L A + +V G++I+ Q+ LR + +V+TP R
Sbjct: 81 LVLVPTRELAAQVEDTLRQLAAHLPRRLKSVVATGGSSINPQLLALRGGA-DIVVATPGR 139
Query: 317 LLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSV 373
LL LV A+ +S + LV+ DRL L G L I + + TV+F+ T
Sbjct: 140 LLDLVEHNALRLSEAATLVLDEADRLLELGFGAELDRILALLPAQRQTVLFS----ATFP 195
Query: 374 PAVQNLL---LGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAY 425
PA+ +L L R++++ + A +++ V A ++L+ + +L+HA+
Sbjct: 196 PAIASLAKRRLRDPLRITIDATPEQAPAIAQRAIAVDAGQRTQLLRHL-LLEHAW 249
>gi|254166522|ref|ZP_04873376.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
gi|289596178|ref|YP_003482874.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
gi|197624132|gb|EDY36693.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
gi|289533965|gb|ADD08312.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
Length = 451
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
+ LV ++E A +V V + + KA G TV ++ GA ++ QI GL+ ++ TP R++
Sbjct: 73 IVLVPTRELAQQVERVARSIGKAHGKRTVVIYGGAPMERQIAGLKGAS--MVIGTPGRVM 130
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL 342
L+ ++++G+ V+D D +
Sbjct: 131 DLMRRGYLNLNGIRFFVLDEADRM 154
>gi|405760601|ref|YP_006701197.1| ATP-dependent RNA helicase YfmL [Streptococcus pneumoniae SPNA45]
gi|404277490|emb|CCM08018.1| ATP-dependent RNA helicase YfmL [Streptococcus pneumoniae SPNA45]
Length = 360
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L++ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKNG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|421554967|ref|ZP_16000906.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 98008]
gi|402332120|gb|EJU67451.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 98008]
Length = 462
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 21/173 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+ +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
GA+ +Q L S + +V+TP RL+ L+ +D + + +L++D D +
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRM 162
>gi|296314174|ref|ZP_06864115.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea
ATCC 43768]
gi|296839180|gb|EFH23118.1| putative ATP-dependent RNA helicase RhlE [Neisseria polysaccharea
ATCC 43768]
Length = 457
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 24/199 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+ +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--D 346
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D L G D
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFGRLEVLILDEADRMLDMGFID 169
Query: 347 TLSLIRQSISGKPHTVVFN 365
+ I ++ T++F+
Sbjct: 170 DIETIVEATPSDRQTLLFS 188
>gi|257899122|ref|ZP_05678775.1| helicase [Enterococcus faecium Com15]
gi|257837034|gb|EEV62108.1| helicase [Enterococcus faecium Com15]
Length = 425
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L+ SSQE A +V V + K + SL GA + QI GL+ +PE L+ TP R+
Sbjct: 71 LVIFASSQELAIQVADVAREWGKDKELKVQSLVGGANVKRQIEGLKK-KPEILIGTPGRI 129
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
L+L+ K I V +V D D L +I Q + P
Sbjct: 130 LELMKAKKIKAHQVKTMVFDEADQLFDAGNSQIIDQILHQAP 171
>gi|416993086|ref|ZP_11938873.1| DEAD/DEAH box helicase domain-containing protein, partial
[Burkholderia sp. TJI49]
gi|325518442|gb|EGC98145.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
TJI49]
Length = 328
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 18/180 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 131 PGLLVLTPTRELAMQVTTAAS---TYGKHLKRLRTVSILGGVAYGQQLM-LLAKNPEILV 186
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I + P T++F+ L
Sbjct: 187 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIEDIETIVEATPESRQTMLFSATL 246
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ ++ + LL R+ + Q + S+ A I Q+V+ + K ++LDH D+
Sbjct: 247 D-GKIGSLTSRLLKDPERIEIQQRLESR-ANIAQTVHYVDDRDHK----DRLLDHLLRDN 300
>gi|254168903|ref|ZP_04875743.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
gi|197622167|gb|EDY34742.1| DEAD/DEAH box helicase domain protein [Aciduliprofundum boonei
T469]
Length = 451
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
+ LV ++E A +V V + + KA G TV ++ GA ++ QI GL+ ++ TP R++
Sbjct: 73 IVLVPTRELAQQVERVARSIGKAHGKRTVVIYGGAPMERQIAGLKGAS--MVIGTPGRVM 130
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL 342
L+ ++++G+ V+D D +
Sbjct: 131 DLMRRGYLNLNGIRFFVLDEADRM 154
>gi|407068947|ref|ZP_11099785.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
cyclitrophicus ZF14]
Length = 443
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 15/199 (7%)
Query: 216 SAKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
+ KD+L +S GS T+ + ++ A + A FS P + L ++E A +V
Sbjct: 37 AGKDLLASSKTGSGKTLAFVLPMIHKALKTKA------FSAKDPRGVILAPTRELAKQVY 90
Query: 274 SVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332
+ L + G + Q+ LR P F+V+TP RL + +++ + GV
Sbjct: 91 GELRSMLGGLSYEAALILGGENFNDQVKALRKY-PRFIVATPGRLADHLEHRSLFLDGVE 149
Query: 333 LLVVDRLDSLSKGDTLSLIRQSISGKPH----TVVFNDCLTYTSVPAVQNLLLGSINRLS 388
L++D D + +R+ + H T++F+ L + V + N +L + R+S
Sbjct: 150 TLILDEADRMLDLGFAPELRRIANAAKHRRRQTLMFSATLDHAEVNGIANEMLDAPKRIS 209
Query: 389 LNQSVASQSACIIQSVNVC 407
+ S Q I Q +C
Sbjct: 210 VGVS-NEQHLDITQKFYLC 227
>gi|15677233|ref|NP_274386.1| ATP-dependent RNA helicase [Neisseria meningitidis MC58]
gi|385328633|ref|YP_005882936.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha710]
gi|385341717|ref|YP_005895588.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240149]
gi|385853007|ref|YP_005899521.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
H44/76]
gi|385857437|ref|YP_005903949.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NZ-05/33]
gi|416170381|ref|ZP_11608309.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
OX99.30304]
gi|416187461|ref|ZP_11614222.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M0579]
gi|416196318|ref|ZP_11618088.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
CU385]
gi|427828052|ref|ZP_18995071.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
H44/76]
gi|433465310|ref|ZP_20422792.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM422]
gi|433490690|ref|ZP_20447816.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM418]
gi|433505072|ref|ZP_20462011.1| helicase domain protein [Neisseria meningitidis 9506]
gi|433507373|ref|ZP_20464281.1| helicase domain protein [Neisseria meningitidis 9757]
gi|433509576|ref|ZP_20466445.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 12888]
gi|433511579|ref|ZP_20468406.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 4119]
gi|7226614|gb|AAF41742.1| putative ATP-dependent RNA helicase [Neisseria meningitidis MC58]
gi|308389485|gb|ADO31805.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha710]
gi|316984178|gb|EFV63156.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
H44/76]
gi|325130443|gb|EGC53205.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
OX99.30304]
gi|325136474|gb|EGC59080.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M0579]
gi|325140412|gb|EGC62933.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
CU385]
gi|325200011|gb|ADY95466.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
H44/76]
gi|325201923|gb|ADY97377.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240149]
gi|325208326|gb|ADZ03778.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
NZ-05/33]
gi|389605504|emb|CCA44421.1| DEAD-box ATP-dependent RNA helicase 42 [Neisseria meningitidis
alpha522]
gi|432203254|gb|ELK59308.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM422]
gi|432227681|gb|ELK83390.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM418]
gi|432241197|gb|ELK96727.1| helicase domain protein [Neisseria meningitidis 9506]
gi|432241738|gb|ELK97267.1| helicase domain protein [Neisseria meningitidis 9757]
gi|432246964|gb|ELL02410.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 12888]
gi|432247627|gb|ELL03064.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 4119]
Length = 462
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 24/199 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+ +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQKLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--D 346
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D L G D
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFID 169
Query: 347 TLSLIRQSISGKPHTVVFN 365
+ I ++ T++F+
Sbjct: 170 DIETIVEATPSDRQTLLFS 188
>gi|421538315|ref|ZP_15984492.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 93003]
gi|402317134|gb|EJU52673.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 93003]
Length = 462
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 24/199 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+ +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--D 346
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D L G D
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFID 169
Query: 347 TLSLIRQSISGKPHTVVFN 365
+ I ++ T++F+
Sbjct: 170 DIETIVEATPSDRQTLLFS 188
>gi|198462622|ref|XP_002135340.1| GA28491 [Drosophila pseudoobscura pseudoobscura]
gi|198150906|gb|EDY73967.1| GA28491 [Drosophila pseudoobscura pseudoobscura]
Length = 537
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 9/211 (4%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL--KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVST 313
GP L L ++E A +++SV AF + + GA Q + L+ E +++T
Sbjct: 176 GPIALVLAPTRELAQQIQSVANDFGSSAF-VRNTCVFGGAPRSKQASDLKRGV-EIIIAT 233
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KPHTVVFNDCLTYT- 371
P RLL + A ++ + LV+D D + IR+ + +P + T+
Sbjct: 234 PGRLLDFLQSGATNLRRCTYLVLDEADRMLDMGFEPQIRKVLGQIRPDRQILMWSATWPK 293
Query: 372 SVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHS 431
V + LGS ++++ S + I Q V VC + EK K +L H Y D H+
Sbjct: 294 EVRQLAEDFLGSYIQINIGSLELSANHNIRQYVEVCG-EHEKSAKLKDLLSHIY-DQAHA 351
Query: 432 EPLKVLYIVGKDSKFQNLVSTLKCKGYSIST 462
P K++ V K L + G S+ +
Sbjct: 352 -PGKIIIFVATKKKTDELARFINAFGVSVGS 381
>gi|433536984|ref|ZP_20493489.1| helicase domain protein [Neisseria meningitidis 77221]
gi|432273920|gb|ELL29017.1| helicase domain protein [Neisseria meningitidis 77221]
Length = 462
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 24/199 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+ +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--D 346
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D L G D
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFID 169
Query: 347 TLSLIRQSISGKPHTVVFN 365
+ I ++ T++F+
Sbjct: 170 DIETIVEATPSDRQTLLFS 188
>gi|421540618|ref|ZP_15986763.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 93004]
gi|402318772|gb|EJU54288.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 93004]
Length = 462
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 24/199 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+ +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--D 346
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D L G D
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFID 169
Query: 347 TLSLIRQSISGKPHTVVFN 365
+ I ++ T++F+
Sbjct: 170 DIETIVEATPSDRQTLLFS 188
>gi|221131953|ref|XP_002164829.1| PREDICTED: probable ATP-dependent RNA helicase DDX17-like [Hydra
magnipapillata]
Length = 674
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 11/178 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHT----VSLHPGAAIDHQITGLRSCEPEFLV 311
GP L L ++E A +V+SV FG+ T ++ GA+ QI L E +V
Sbjct: 179 GPICLVLCPTRELAIQVQSVAG---QFGLTTRVRSTCIYGGASKGPQIRDLERGS-EIVV 234
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KPHTVVFNDCLTY 370
+TP RL+ L+ ++ I + V+ LV+D D + IR+ I +P V T+
Sbjct: 235 ATPGRLIDLIEIRKISLKRVTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQVLMWSATW 294
Query: 371 T-SVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
V + L ++++ S + I+Q V+VC + EK K +++L+ G+
Sbjct: 295 PKEVRKLAEDFLTDYIQINIGSSDIHANHNILQIVDVC-EEYEKDRKLVKLLEEIMGE 351
>gi|218768385|ref|YP_002342897.1| ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
gi|385338217|ref|YP_005892090.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE
2594]
gi|421550861|ref|ZP_15996862.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 69166]
gi|433471424|ref|ZP_20428810.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 68094]
gi|433475102|ref|ZP_20432443.1| helicase domain protein [Neisseria meningitidis 88050]
gi|433477812|ref|ZP_20435132.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 70012]
gi|433479923|ref|ZP_20437213.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63041]
gi|433513686|ref|ZP_20470476.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63049]
gi|433515857|ref|ZP_20472625.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2004090]
gi|433517759|ref|ZP_20474505.1| helicase domain protein [Neisseria meningitidis 96023]
gi|433520141|ref|ZP_20476861.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 65014]
gi|433522082|ref|ZP_20478772.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 61103]
gi|433524325|ref|ZP_20480986.1| helicase domain protein [Neisseria meningitidis 97020]
gi|433526427|ref|ZP_20483057.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 69096]
gi|433528435|ref|ZP_20485044.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM3652]
gi|433530636|ref|ZP_20487225.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM3642]
gi|433532905|ref|ZP_20489468.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2007056]
gi|433534653|ref|ZP_20491193.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2001212]
gi|433539146|ref|ZP_20495622.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 70030]
gi|433541219|ref|ZP_20497671.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63006]
gi|121052393|emb|CAM08725.1| putative ATP-dependent RNA helicase [Neisseria meningitidis Z2491]
gi|319410631|emb|CBY91000.1| putative ATP-dependent RNA helicase [Neisseria meningitidis WUE
2594]
gi|402329398|gb|EJU64759.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 69166]
gi|432208276|gb|ELK64254.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 68094]
gi|432210920|gb|ELK66875.1| helicase domain protein [Neisseria meningitidis 88050]
gi|432215477|gb|ELK71366.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 70012]
gi|432216262|gb|ELK72144.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63041]
gi|432247218|gb|ELL02657.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63049]
gi|432252783|gb|ELL08133.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2004090]
gi|432253495|gb|ELL08839.1| helicase domain protein [Neisseria meningitidis 96023]
gi|432254863|gb|ELL10197.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 65014]
gi|432259153|gb|ELL14427.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 61103]
gi|432259569|gb|ELL14840.1| helicase domain protein [Neisseria meningitidis 97020]
gi|432261191|gb|ELL16448.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 69096]
gi|432265236|gb|ELL20432.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM3652]
gi|432266728|gb|ELL21910.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2007056]
gi|432267143|gb|ELL22324.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM3642]
gi|432271395|gb|ELL26520.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 2001212]
gi|432273508|gb|ELL28606.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 70030]
gi|432277232|gb|ELL32281.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis 63006]
Length = 462
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 21/173 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+ +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
GA+ +Q L S + +V+TP RL+ L+ +D + + +L++D D +
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFARLEVLILDEADRM 162
>gi|300770793|ref|ZP_07080671.1| DEAD/DEAH box family ATP-dependent RNA helicase [Sphingobacterium
spiritivorum ATCC 33861]
gi|300762350|gb|EFK59168.1| DEAD/DEAH box family ATP-dependent RNA helicase [Sphingobacterium
spiritivorum ATCC 33861]
Length = 603
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF-----GIHTVSLHPGA 293
TAA + E+ FS P L L ++E ++ K L+ F G+H V+++ GA
Sbjct: 54 TAAFGLPLLEQLDFSQKHPQALVLCPTRELCLQI---AKDLEKFAKYIDGVHVVAVYGGA 110
Query: 294 AIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
I Q+ +R + +V+TP R+L ++ AID S V +V+D D +
Sbjct: 111 NISDQLRQIRRG-VQIVVATPGRMLDIIGRNAIDFSNVKYVVLDEADEM 158
>gi|241766543|ref|ZP_04764404.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
gi|241363218|gb|EER58791.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
Length = 415
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 31/183 (16%)
Query: 260 LFLVSSQEKAAKV--------RSVCKPLKA---FGIHTVSLHPGAAIDHQITGLRSCEPE 308
L LV ++E AA+V R + +P+K FG G +I+ Q+ GLR +
Sbjct: 77 LILVPTRELAAQVGEVIRSLGRGLPQPVKVAVVFG--------GVSINPQMMGLRGGA-D 127
Query: 309 FLVSTPERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFN 365
+V+TP RLL LV A+ + V LV+ DRL L + L I Q + + ++F
Sbjct: 128 VVVATPGRLLDLVEHNALRLGSVEHLVLDEADRLLDLGFAEELQRILQLLPVRRQNLLF- 186
Query: 366 DCLTYTSVPAVQNLLLGSIN---RLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLD 422
+ T PAVQ L G ++ R++++ + A+ A ++ V A ++L+ + V +
Sbjct: 187 ---SATFAPAVQALAEGMLHEPVRVTVDDAPANVPAIAQRAFAVDAQRRTQLLRHL-VQE 242
Query: 423 HAY 425
H +
Sbjct: 243 HQW 245
>gi|387757742|ref|YP_006064721.1| putative RNA helicase [Streptococcus pneumoniae OXC141]
gi|418232487|ref|ZP_12859074.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07228]
gi|418236943|ref|ZP_12863511.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19690]
gi|419480336|ref|ZP_14020141.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19101]
gi|419500035|ref|ZP_14039729.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47597]
gi|301800331|emb|CBW32957.1| putative RNA helicase [Streptococcus pneumoniae OXC141]
gi|353887214|gb|EHE66994.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07228]
gi|353893175|gb|EHE72923.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19690]
gi|379570290|gb|EHZ35254.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19101]
gi|379599343|gb|EHZ64126.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47597]
gi|429316367|emb|CCP36061.1| putative RNA helicase [Streptococcus pneumoniae SPN034156]
gi|429319711|emb|CCP33013.1| putative RNA helicase [Streptococcus pneumoniae SPN034183]
gi|429321527|emb|CCP34987.1| putative RNA helicase [Streptococcus pneumoniae SPN994039]
gi|429323347|emb|CCP31028.1| putative RNA helicase [Streptococcus pneumoniae SPN994038]
Length = 360
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L++ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKNG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|401889158|gb|EJT53098.1| ATP-dependent RNA helicase DBP2 (p68-like protein) [Trichosporon
asahii var. asahii CBS 2479]
Length = 387
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 127/289 (43%), Gaps = 44/289 (15%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL---ET-SGSSSTIVQIAWIVATAA 241
+ + +R G ++ +P+ +W + S +D++ ET SG + + A + A
Sbjct: 72 VMSEIRAMGFKEPSPIQCQAWPMAL-----SGRDVVAIAETGSGKTISFALPAMVHINAQ 126
Query: 242 DSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQIT 300
+A + GP +L L ++E A ++++ C K+ I +++ GA QI
Sbjct: 127 PLLAPGD-------GPIVLILAPTRELAVQIQAECTKFGKSSRIRNTAVYGGAPKGAQIR 179
Query: 301 GL-RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-K 358
L R CE +V+TP RL+ ++ ++ V+ LV+D D + IR+ +S +
Sbjct: 180 DLQRGCE--IVVATPGRLIDMLESGKTNLKRVTYLVMDEADRMLDMGFEPQIRKIVSQIR 237
Query: 359 P--HTVVFNDCLTYTSVPAVQNLL-------LGSINRLSLNQSVASQSACIIQSVNVCAS 409
P T++F+ Q+ L +GS + L+ N +VA Q V VC
Sbjct: 238 PDRQTLLFSATWPKDVQRLAQDFLNDYIQVNIGSED-LTANHNVA-------QHVTVCTD 289
Query: 410 DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
+++ + +L H D E KVL VG +L L+ G+
Sbjct: 290 YDKRSM----LLKHL--DQISRENAKVLIFVGTKRVADDLTKFLRQDGW 332
>gi|254805163|ref|YP_003083384.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha14]
gi|254668705|emb|CBA06474.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha14]
Length = 462
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 21/173 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+ +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D +
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFGRLEVLILDEADRM 162
>gi|385323970|ref|YP_005878409.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013]
gi|385855420|ref|YP_005901933.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240355]
gi|421565630|ref|ZP_16011403.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM3081]
gi|261392357|emb|CAX49897.1| putative ATP-dependent RNA helicase [Neisseria meningitidis 8013]
gi|325204361|gb|ADY99814.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240355]
gi|402344065|gb|EJU79207.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM3081]
Length = 462
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 24/199 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+ +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--D 346
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D L G D
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFID 169
Query: 347 TLSLIRQSISGKPHTVVFN 365
+ I ++ T++F+
Sbjct: 170 DIETIVEATPSDRQTLLFS 188
>gi|417092627|ref|ZP_11957243.1| superfamily II DNA/RNA helicase [Streptococcus suis R61]
gi|353532306|gb|EHC01978.1| superfamily II DNA/RNA helicase [Streptococcus suis R61]
Length = 523
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 28/138 (20%)
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293
A I+A + + ++E F F +EK KVRSV + G+
Sbjct: 72 ALIIAPTRELAVQSQEELFKF----------GREKGVKVRSV--------------YGGS 107
Query: 294 AIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--DTLSL 350
+I+ QI LRS +V TP RLL L+ KA+ + GV L++D D L+ G D +
Sbjct: 108 SIEKQIKALRSGA-HIVVGTPGRLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEA 166
Query: 351 IRQSISGKPHTVVFNDCL 368
I + + T++F+ +
Sbjct: 167 IIERVPASRQTLLFSATM 184
>gi|390568878|ref|ZP_10249170.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|420252763|ref|ZP_14755860.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
gi|389939227|gb|EIN01064.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|398053794|gb|EJL45951.1| DNA/RNA helicase, superfamily II [Burkholderia sp. BT03]
Length = 553
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 18/175 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 130 PSLLVLTPTRELAMQVTTAAS---TYGKHLKRLRTVSILGGVAYGQQLM-LLAKNPEILV 185
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 186 ATPGRLLDHLERGRIDLSQLQMLVLDEADRMLDMGFIDDIETIVAATPATRQTMLFSATL 245
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDH 423
+ ++ LL R+ + Q + Q I Q+V+ + K ++LDH
Sbjct: 246 D-GKIGSLTGRLLKDPERIEIVQRM-EQRTNIAQTVHYVDDRDHK----DRLLDH 294
>gi|241760530|ref|ZP_04758623.1| dead/deah box helicase [Neisseria flavescens SK114]
gi|241319034|gb|EER55536.1| dead/deah box helicase [Neisseria flavescens SK114]
Length = 464
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 24/199 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+ +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTP--IQAQAIPF---ALDGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQKLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--D 346
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D L G D
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFDRLEVLILDEADRMLDMGFID 169
Query: 347 TLSLIRQSISGKPHTVVFN 365
+ I ++ T++F+
Sbjct: 170 DIETIVEATPSDRQTLLFS 188
>gi|402759618|ref|ZP_10861874.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. NCTC 7422]
Length = 383
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 102/244 (41%), Gaps = 24/244 (9%)
Query: 234 AWIVATAADSIARKEKEGFSFTG-PFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHP 291
A++++ D + KE F G P L L ++E A ++ S + L F +H V+L
Sbjct: 56 AFLISVINDLLNNPVKEQ-RFRGEPRALILAPTRELALQIESDAQALTKFSNLHLVTLLG 114
Query: 292 GAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLI 351
G + Q L + +V+TP RL+ V K + + + LV+D D L + +
Sbjct: 115 GVDFEKQKKMLDRNFVDIIVATPGRLIDFVEQKEVWLDKIEFLVIDEADRLLDMGFIPSV 174
Query: 352 RQSISGKP-----HTVVFNDCLTYTSVPAVQNLLLGSIN-RLSLNQSVASQSACIIQSVN 405
++ + P T++F+ +Y + + L + + Q + + Q V
Sbjct: 175 KRIVRYSPFKEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNND---VEQRVY 231
Query: 406 VCA-SDEEKILKGIQVLDHAYGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTG 463
V A D+ K+L+ I EP+ KV+ + + + L LK GY +
Sbjct: 232 VVAKQDKYKLLQEI----------LREEPIDKVMIFANRRDQVRRLYDHLKRDGYKVGML 281
Query: 464 SNCI 467
S I
Sbjct: 282 SGEI 285
>gi|421559409|ref|ZP_16005283.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 92045]
gi|433488648|ref|ZP_20445810.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M13255]
gi|254674247|emb|CBA10031.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha275]
gi|402335908|gb|EJU71171.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 92045]
gi|432223481|gb|ELK79262.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M13255]
Length = 462
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 24/199 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+ +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--D 346
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D L G D
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFID 169
Query: 347 TLSLIRQSISGKPHTVVFN 365
+ I ++ T++F+
Sbjct: 170 DIETIVEATPSDRQTLLFS 188
>gi|172060994|ref|YP_001808646.1| DEAD/DEAH box helicase [Burkholderia ambifaria MC40-6]
gi|171993511|gb|ACB64430.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria
MC40-6]
Length = 512
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 131 PGLLVLTPTRELAMQVTTAAS---TYGKHLKRLRTVSILGGVAYGQQLM-LLAKNPEILV 186
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 187 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIETIVAATPASRQTMLFSATL 246
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ LL R+ + Q + S++ I Q+V+ + K ++LDH D
Sbjct: 247 D-GKIGSLTGRLLKDPERIEIQQRLESRT-NIAQTVHYVDDRDHK----DRLLDHLLRD 299
>gi|366052675|ref|ZP_09450397.1| ATP-dependent RNA helicase [Lactobacillus suebicus KCTC 3549]
Length = 450
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G +L L SQE A + +V + K + ++L GA I QI L+ PE ++ TP
Sbjct: 61 GVQVLVLSPSQELAVQTANVMRDWAKLLNVKVLALTGGANIHRQIDKLKK-HPEVVIGTP 119
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVP 374
R+L L+ + + + ++VD D + + +TL++I P T + T P
Sbjct: 120 GRVLHLLETNHLKIGELQTMIVDEADDMLQDETLAVIEDIERATPMTAQLG-FFSATRTP 178
Query: 375 AVQNL 379
+ +L
Sbjct: 179 VLDDL 183
>gi|416161277|ref|ZP_11606336.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
N1568]
gi|325128442|gb|EGC51323.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
N1568]
Length = 462
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 21/173 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+ +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D +
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRM 162
>gi|403052034|ref|ZP_10906518.1| ATP-dependent RNA helicase RhlB [Acinetobacter bereziniae LMG 1003]
gi|445418409|ref|ZP_21434896.1| DEAD/DEAH box helicase [Acinetobacter sp. WC-743]
gi|444760745|gb|ELW85181.1| DEAD/DEAH box helicase [Acinetobacter sp. WC-743]
Length = 383
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 21/223 (9%)
Query: 254 FTG-PFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLV 311
F G P L L ++E A ++ + K L + G++ V+L G D Q L + LV
Sbjct: 75 FRGEPRALILAPTRELAIQIENDAKDLVKYSGLNVVTLVGGVDFDKQRKQLDQGFVDILV 134
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFND 366
+TP RL+ K I + + LV+D D L + +++ + P T++F+
Sbjct: 135 ATPGRLIDFTEQKEIWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRKEQRQTLMFSA 194
Query: 367 CLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCA-SDEEKILKGIQVLDHAY 425
+Y + Q L + + +A + Q V V D+ K+L+ I
Sbjct: 195 TFSYDVLNLAQQWLFEPVT--VEIEPEKKTNADVEQRVYVVEKKDKYKLLREI------- 245
Query: 426 GDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
EP+ KV+ + + + L LK GY + S I
Sbjct: 246 ---LTDEPIEKVMIFANRRDQVRKLYDHLKADGYKVVMLSGEI 285
>gi|148984827|ref|ZP_01818080.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP3-BS71]
gi|147922849|gb|EDK73965.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP3-BS71]
Length = 341
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L++ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKNG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|303255022|ref|ZP_07341099.1| DEAD-box ATP dependent DNA helicase [Streptococcus pneumoniae
BS455]
gi|303259082|ref|ZP_07345061.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP-BS293]
gi|303261762|ref|ZP_07347709.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP14-BS292]
gi|303264435|ref|ZP_07350355.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae BS397]
gi|303266733|ref|ZP_07352615.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae BS457]
gi|303269158|ref|ZP_07354936.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae BS458]
gi|387759622|ref|YP_006066600.1| putative RNA helicase [Streptococcus pneumoniae INV200]
gi|418139815|ref|ZP_12776641.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13338]
gi|418180846|ref|ZP_12817415.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41688]
gi|418200809|ref|ZP_12837252.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47976]
gi|419515005|ref|ZP_14054630.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
England14-9]
gi|421296323|ref|ZP_15747033.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA58581]
gi|301802211|emb|CBW34958.1| putative RNA helicase [Streptococcus pneumoniae INV200]
gi|302598029|gb|EFL65098.1| DEAD-box ATP dependent DNA helicase [Streptococcus pneumoniae
BS455]
gi|302637342|gb|EFL67830.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP14-BS292]
gi|302640025|gb|EFL70481.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP-BS293]
gi|302641282|gb|EFL71651.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae BS458]
gi|302643722|gb|EFL73987.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae BS457]
gi|302646247|gb|EFL76474.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae BS397]
gi|353842918|gb|EHE22963.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41688]
gi|353864350|gb|EHE44268.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47976]
gi|353905288|gb|EHE80727.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13338]
gi|379635554|gb|EIA00113.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
England14-9]
gi|395895844|gb|EJH06814.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA58581]
Length = 360
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK KA G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAKASGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|358400668|gb|EHK49994.1| hypothetical protein TRIATDRAFT_161675, partial [Trichoderma
atroviride IMI 206040]
Length = 1258
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 102/224 (45%), Gaps = 21/224 (9%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LK + V + GA I QI L+ E +V TP
Sbjct: 699 GPIGLIMTPTRELATQIHRDCKPFLKMMNLRAVCAYGGAPIRDQIAELKRGA-EIIVCTP 757
Query: 315 ERLLKLVSL---KAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ + ++ V+ +V+D D + G +++ + +P T++F+
Sbjct: 758 GRMIDLLAANQGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIFANMRPDRQTILFS--- 814
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEE--KILKGIQVLDHAYG 426
++P + + L + + + +V +S + + EE K ++ +++L Y
Sbjct: 815 --ATMPRLIDSLTKKVLKSPIEITVGGRSVVAKEIEQIVEIREESTKFVRVLELLGELYD 872
Query: 427 DHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
E + L V + K +L+ L KGY SI G + +
Sbjct: 873 ---KDEDARSLLFVERQEKADDLLKELMQKGYPCMSIHGGKDQV 913
>gi|121635074|ref|YP_975319.1| ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
gi|385851042|ref|YP_005897557.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M04-240196]
gi|416177869|ref|ZP_11610238.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M6190]
gi|416182746|ref|ZP_11612182.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M13399]
gi|416191897|ref|ZP_11616278.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
ES14902]
gi|416213139|ref|ZP_11622123.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240013]
gi|433469561|ref|ZP_20426982.1| helicase domain protein [Neisseria meningitidis 98080]
gi|433492761|ref|ZP_20449854.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM586]
gi|433494895|ref|ZP_20451963.1| putative ATP-dependent RNA helicase [Neisseria meningitidis NM762]
gi|433497061|ref|ZP_20454099.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M7089]
gi|433499123|ref|ZP_20456132.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M7124]
gi|433501099|ref|ZP_20458085.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM174]
gi|433503205|ref|ZP_20460166.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM126]
gi|120866780|emb|CAM10533.1| putative ATP-dependent RNA helicase [Neisseria meningitidis FAM18]
gi|325132439|gb|EGC55132.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M6190]
gi|325134396|gb|EGC57041.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M13399]
gi|325138213|gb|EGC60782.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
ES14902]
gi|325144497|gb|EGC66796.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M01-240013]
gi|325205865|gb|ADZ01318.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
M04-240196]
gi|432203831|gb|ELK59881.1| helicase domain protein [Neisseria meningitidis 98080]
gi|432228547|gb|ELK84247.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM586]
gi|432230098|gb|ELK85777.1| putative ATP-dependent RNA helicase [Neisseria meningitidis NM762]
gi|432233554|gb|ELK89181.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M7089]
gi|432234957|gb|ELK90577.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis M7124]
gi|432236390|gb|ELK91999.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM174]
gi|432239970|gb|ELK95514.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM126]
Length = 462
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 21/173 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+ +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D +
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRM 162
>gi|115352130|ref|YP_773969.1| DEAD/DEAH box helicase [Burkholderia ambifaria AMMD]
gi|115282118|gb|ABI87635.1| DEAD/DEAH box helicase domain protein [Burkholderia ambifaria AMMD]
Length = 512
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 131 PGLLVLTPTRELAMQVTTAAS---TYGKHLKRLRTVSILGGVAYGQQLM-LLAKNPEILV 186
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 187 ATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIETIVAATPASRQTMLFSATL 246
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ LL R+ + Q + S++ I Q+V+ + K ++LDH D
Sbjct: 247 D-GKIGSLTGRLLKDPERIEIQQRLESRT-NIAQTVHYVDDRDHK----DRLLDHLLRD 299
>gi|421542668|ref|ZP_15988775.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM255]
gi|402317498|gb|EJU53036.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM255]
Length = 462
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 24/199 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+ +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTP--IQAQAIPF---ALEGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--D 346
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D L G D
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFID 169
Query: 347 TLSLIRQSISGKPHTVVFN 365
+ I ++ T++F+
Sbjct: 170 DIETIVEATPSDRQTLLFS 188
>gi|336386298|gb|EGO27444.1| hypothetical protein SERLADRAFT_354747 [Serpula lacrymans var.
lacrymans S7.9]
Length = 914
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 96/215 (44%), Gaps = 20/215 (9%)
Query: 254 FTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVS 312
GP + + ++E A ++ C+P L+ + V + G+ I QI L+ E +V
Sbjct: 300 MEGPLAIVMTPTRELAVQIHRECRPFLRVMNLRAVCAYGGSPIKDQIAELKKGA-EIIVC 358
Query: 313 TPERLLKLV---SLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFND 366
TP R++ L+ S + ++ V+ +V+ DR+ + + I +I TV+F+
Sbjct: 359 TPGRMIDLLTANSGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIVNNIRPDRQTVLFS- 417
Query: 367 CLTYTSVPAVQNLLLGSINRLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHA 424
+ P + L I R L +V +S A I+ + ++ K + +++L
Sbjct: 418 ----ATFPKQMDSLARKILRKPLEITVGGRSVVAAEIEQIVEVRPEDSKFNRLLEIL--- 470
Query: 425 YGDHFHSEP-LKVLYIVGKDSKFQNLVSTLKCKGY 458
G ++ +P + L V + NL+ L KGY
Sbjct: 471 -GQMYNEDPECRTLIFVDRQEAADNLLRDLMRKGY 504
>gi|392539750|ref|ZP_10286887.1| ATP-dependent RNA helicase [Pseudoalteromonas marina mano4]
Length = 435
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKA---FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E A +V K A I TV++ G +++ Q+ LR + +V+TP R
Sbjct: 89 LILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQALRGGA-DIIVATPGR 147
Query: 317 LLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSV 373
LL L+S AI + V+ LV+ DR+ SL + L+ + + K T++F+
Sbjct: 148 LLDLISSNAIKLDKVTTLVLDEADRMLSLGFTEELAELLALMPAKKQTMLFSATFPEQVT 207
Query: 374 PAVQNLL 380
Q LL
Sbjct: 208 LLTQELL 214
>gi|347537925|ref|YP_004845349.1| ATP-dependent RNA helicase [Pseudogulbenkiania sp. NH8B]
gi|345641102|dbj|BAK74935.1| ATP-dependent RNA helicase [Pseudogulbenkiania sp. NH8B]
Length = 560
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-TVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E AA+V + + H ++ + G I+ QI LR + LV+TP
Sbjct: 77 PRALVLTPTRELAAQVEESVRTYGKYLPHKSMVMFGGVGINPQIAALRKPL-DILVATPG 135
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RLL K +D+SGV +LV+D D +
Sbjct: 136 RLLDHAGQKTVDLSGVEILVLDEADRM 162
>gi|417923154|ref|ZP_12566626.1| type III restriction enzyme, res subunit [Streptococcus mitis
SK569]
gi|342837277|gb|EGU71473.1| type III restriction enzyme, res subunit [Streptococcus mitis
SK569]
Length = 360
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLAVQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|326801263|ref|YP_004319082.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
gi|326552027|gb|ADZ80412.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
Length = 597
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF-----GIHTVSLHPGA 293
TAA + E FS P L L ++E ++ LK F +H V+++ GA
Sbjct: 54 TAAFGLPLLELLDFSQNTPQALVLCPTRELCLQI---TNDLKNFSKNLDNVHVVAVYGGA 110
Query: 294 AIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
I Q+ +R + +V+TP R+L ++ KAID SGV +V+D D +
Sbjct: 111 NISDQLRQIRRG-VQIVVATPGRMLDIIGRKAIDFSGVRYVVLDEADEM 158
>gi|227363253|ref|ZP_03847385.1| ATP-dependent RNA helicase [Lactobacillus reuteri MM2-3]
gi|325682139|ref|ZP_08161657.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
reuteri MM4-1A]
gi|227071709|gb|EEI10000.1| ATP-dependent RNA helicase [Lactobacillus reuteri MM2-3]
gi|324978783|gb|EGC15732.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
reuteri MM4-1A]
Length = 467
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 265 SQEKAAKVRSVCKPLKAFGIHTVSLH---PGAAIDHQITGLRSCEPEFLVSTPERLLKLV 321
S+E A ++ + K L + H +++H G HQ+ L +P+ ++ TP R+L L+
Sbjct: 91 SRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTDKQHQVDQLSRKQPQLVIGTPGRVLDLI 150
Query: 322 SLKAIDVSGVSLLVVDRLD 340
+A+D+ + VVD D
Sbjct: 151 KSQALDIHTAKMFVVDEAD 169
>gi|261380720|ref|ZP_05985293.1| putative ATP-dependent RNA helicase RhlE [Neisseria subflava
NJ9703]
gi|284796437|gb|EFC51784.1| putative ATP-dependent RNA helicase RhlE [Neisseria subflava
NJ9703]
Length = 469
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 24/199 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQI 233
KF L L+ I +A+ +G E P + + I F +DI+ + +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTP--IQAQAIPF---ALDGRDIMASAQTGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQKLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--D 346
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D L G D
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFID 169
Query: 347 TLSLIRQSISGKPHTVVFN 365
+ I ++ T++F+
Sbjct: 170 DIETIVEATPSDRQTLLFS 188
>gi|359429519|ref|ZP_09220543.1| putative helicase [Acinetobacter sp. NBRC 100985]
gi|358234980|dbj|GAB02082.1| putative helicase [Acinetobacter sp. NBRC 100985]
Length = 383
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 23/224 (10%)
Query: 254 FTG-PFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
F G P L L ++E A ++ S K L F +H V+L G D Q L + +V
Sbjct: 75 FRGEPRALILAPTRELALQIESDAKALTKFSDLHLVTLLGGVDFDKQKKMLDRNFVDIIV 134
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFND 366
+TP RL+ V K + + + LV+D D L + +++ + P T++F+
Sbjct: 135 ATPGRLIDFVEQKEVWLDRIEFLVIDEADRLLDMGFIPSVKRIVRYSPFKEQRQTLMFSA 194
Query: 367 CLTYTSVPAVQNLLLGSIN-RLSLNQSVASQSACIIQSVNVCAS-DEEKILKGIQVLDHA 424
+Y + + L + + Q + + Q V V + D+ K+L+ I
Sbjct: 195 TFSYDVLNLARQWLFEPVTVEIEPEQKTNND---VEQRVYVVENKDKYKLLQEI------ 245
Query: 425 YGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
EP+ KV+ + + + L LK GY + S I
Sbjct: 246 ----LKDEPIDKVMIFANRRDQVRRLYDHLKRDGYKVGMLSGEI 285
>gi|227544205|ref|ZP_03974254.1| ATP-dependent RNA helicase [Lactobacillus reuteri CF48-3A]
gi|338204115|ref|YP_004650260.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
reuteri SD2112]
gi|227185841|gb|EEI65912.1| ATP-dependent RNA helicase [Lactobacillus reuteri CF48-3A]
gi|336449355|gb|AEI57970.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
reuteri SD2112]
Length = 467
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 265 SQEKAAKVRSVCKPLKAFGIHTVSLH---PGAAIDHQITGLRSCEPEFLVSTPERLLKLV 321
S+E A ++ + K L + H +++H G HQ+ L +P+ ++ TP R+L L+
Sbjct: 91 SRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTDKQHQVDQLSRKQPQLVIGTPGRVLDLI 150
Query: 322 SLKAIDVSGVSLLVVDRLD 340
+A+D+ + VVD D
Sbjct: 151 KSQALDIHTAKMFVVDEAD 169
>gi|379731047|ref|YP_005323243.1| DEAD/DEAH box helicase [Saprospira grandis str. Lewin]
gi|378576658|gb|AFC25659.1| DEAD/DEAH box helicase domain protein [Saprospira grandis str.
Lewin]
Length = 474
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 273 RSVCKPLKAFG-----IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
+ + K L FG I+ ++++ GA I Q+ LRS +++TP RL+ L+ A+D
Sbjct: 66 QQIAKQLALFGKYQQRINMLAVYGGAPIVKQLKALRSAPQHIIIATPGRLIDLLKRGAVD 125
Query: 328 VSGVSLLVVDRLDSL 342
+ G+ LV+D D +
Sbjct: 126 LRGLRYLVLDEADEM 140
>gi|15901333|ref|NP_345937.1| DEAD/DEAH box helicase [Streptococcus pneumoniae TIGR4]
gi|15903379|ref|NP_358929.1| DEAD RNA helicase [Streptococcus pneumoniae R6]
gi|111656878|ref|ZP_01407712.1| hypothetical protein SpneT_02001871 [Streptococcus pneumoniae
TIGR4]
gi|116516831|ref|YP_816778.1| ATP-dependent RNA helicase [Streptococcus pneumoniae D39]
gi|148997457|ref|ZP_01825062.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP11-BS70]
gi|149011715|ref|ZP_01832911.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP19-BS75]
gi|182684440|ref|YP_001836187.1| DEAD/DEAH box helicase [Streptococcus pneumoniae CGSP14]
gi|307068131|ref|YP_003877097.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
AP200]
gi|417686930|ref|ZP_12336204.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41301]
gi|418087169|ref|ZP_12724338.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47033]
gi|418130640|ref|ZP_12767523.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07643]
gi|418146683|ref|ZP_12783461.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13637]
gi|418187477|ref|ZP_12824000.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47360]
gi|418189673|ref|ZP_12826187.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47373]
gi|418230210|ref|ZP_12856811.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP01]
gi|419471389|ref|ZP_14011248.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07914]
gi|419478134|ref|ZP_14017958.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18068]
gi|419504241|ref|ZP_14043909.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47760]
gi|419521413|ref|ZP_14061008.1| type III restriction enzyme, res subunit [Streptococcus pneumoniae
GA05245]
gi|421234393|ref|ZP_15691011.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061617]
gi|421243399|ref|ZP_15699916.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081074]
gi|421249716|ref|ZP_15706173.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082239]
gi|421266484|ref|ZP_15717364.1| type III restriction enzyme, res subunit [Streptococcus pneumoniae
SPAR27]
gi|421307696|ref|ZP_15758338.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA60132]
gi|421314376|ref|ZP_15764965.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA47562]
gi|14972974|gb|AAK75577.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae TIGR4]
gi|15458982|gb|AAL00140.1| DEAD RNA helicase [Streptococcus pneumoniae R6]
gi|116077407|gb|ABJ55127.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae D39]
gi|147756512|gb|EDK63553.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP11-BS70]
gi|147764146|gb|EDK71078.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP19-BS75]
gi|182629774|gb|ACB90722.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae CGSP14]
gi|306409668|gb|ADM85095.1| Superfamily II DNA and RNA helicase [Streptococcus pneumoniae
AP200]
gi|332073820|gb|EGI84298.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41301]
gi|353758185|gb|EHD38777.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47033]
gi|353801964|gb|EHD82264.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07643]
gi|353812258|gb|EHD92493.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13637]
gi|353849462|gb|EHE29467.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47360]
gi|353854587|gb|EHE34563.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47373]
gi|353886227|gb|EHE66010.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP01]
gi|379538713|gb|EHZ03893.1| type III restriction enzyme, res subunit [Streptococcus pneumoniae
GA05245]
gi|379546105|gb|EHZ11244.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07914]
gi|379565570|gb|EHZ30562.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18068]
gi|379605629|gb|EHZ70379.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47760]
gi|395600247|gb|EJG60404.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061617]
gi|395607068|gb|EJG67166.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081074]
gi|395613410|gb|EJG73438.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082239]
gi|395866552|gb|EJG77680.1| type III restriction enzyme, res subunit [Streptococcus pneumoniae
SPAR27]
gi|395907081|gb|EJH17975.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA60132]
gi|395913692|gb|EJH24542.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA47562]
Length = 360
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|375263823|ref|YP_005026053.1| DEAD-box ATP dependent DNA helicase [Vibrio sp. EJY3]
gi|369844250|gb|AEX25078.1| DEAD-box ATP dependent DNA helicase [Vibrio sp. EJY3]
Length = 447
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 104/239 (43%), Gaps = 25/239 (10%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYS----------SAKDILETS--GSSSTIVQI 233
+EN ++ + DN L N +F K + KD+L +S GS T+
Sbjct: 1 MENTLQFKDLGLDNRLLKNLKHYDFKKATEIQQQAIPVAIAGKDLLASSKTGSGKTL--- 57
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPG 292
A+++ S+ K FS P + L ++E A +V + + A + G
Sbjct: 58 AFVLPMLHKSLKTK---SFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYEAALILGG 114
Query: 293 AAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR 352
+ Q+ LR P+F+V+TP RL + +++ + G+ L++D D + +R
Sbjct: 115 ENFNDQVKALRRY-PKFIVATPGRLADHLEHRSLYLEGLETLILDEADRMLDLGFAPELR 173
Query: 353 QSISGKPH----TVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC 407
+ + H T++F+ L + V ++ + +L + R+S+ S + I Q +C
Sbjct: 174 RIHNAAKHRRRQTLMFSATLDHAEVNSIASEMLNAPKRISIGVS-NEEHKDITQKFYLC 231
>gi|225854923|ref|YP_002736435.1| DEAD/DEAH box helicase [Streptococcus pneumoniae JJA]
gi|421236583|ref|ZP_15693181.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071004]
gi|225723850|gb|ACO19703.1| DEAD/DEAH box helicase [Streptococcus pneumoniae JJA]
gi|395602428|gb|EJG62571.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071004]
Length = 360
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|84385387|ref|ZP_00988419.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
12B01]
gi|84379984|gb|EAP96835.1| ATP-dependent RNA helicase, DEAD box family [Vibrio splendidus
12B01]
Length = 443
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 15/199 (7%)
Query: 216 SAKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
+ KD+L +S GS T+ + ++ A + A FS P + L ++E A +V
Sbjct: 37 AGKDLLASSKTGSGKTLAFVLPMIHKALKTKA------FSAKDPRGVILAPTRELAKQVY 90
Query: 274 SVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332
+ L + G + Q+ LR P F+V+TP RL + +++ + GV
Sbjct: 91 GELRSMLGGLSYEATLILGGENFNDQVKALRKY-PRFIVATPGRLADHLEHRSLFLDGVE 149
Query: 333 LLVVDRLDSLSKGDTLSLIRQSISGKPH----TVVFNDCLTYTSVPAVQNLLLGSINRLS 388
L++D D + +R+ + H T++F+ L + V + N +L + R+S
Sbjct: 150 TLILDEADRMLDLGFAPELRRIANAAKHRRRQTLMFSATLDHAEVNGIANEMLDAPKRIS 209
Query: 389 LNQSVASQSACIIQSVNVC 407
+ S Q I Q +C
Sbjct: 210 VGVS-NEQHLDITQKFYLC 227
>gi|225859243|ref|YP_002740753.1| DEAD RNA helicase [Streptococcus pneumoniae 70585]
gi|225720765|gb|ACO16619.1| DEAD RNA helicase [Streptococcus pneumoniae 70585]
Length = 360
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|148992632|ref|ZP_01822300.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP9-BS68]
gi|168489644|ref|ZP_02713843.1| dead rna helicase [Streptococcus pneumoniae SP195]
gi|168575940|ref|ZP_02721855.1| dead rna helicase [Streptococcus pneumoniae MLV-016]
gi|194398275|ref|YP_002038116.1| hypothetical protein SPG_1409 [Streptococcus pneumoniae G54]
gi|417679411|ref|ZP_12328807.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17570]
gi|418121557|ref|ZP_12758500.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44194]
gi|418126090|ref|ZP_12762996.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44511]
gi|418148863|ref|ZP_12785626.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13856]
gi|418191887|ref|ZP_12828389.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47388]
gi|418234650|ref|ZP_12861226.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08780]
gi|419453703|ref|ZP_13993673.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP03]
gi|419484670|ref|ZP_14024446.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43257]
gi|419491401|ref|ZP_14031139.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47179]
gi|419506386|ref|ZP_14046047.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49194]
gi|419508522|ref|ZP_14048174.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49542]
gi|419532702|ref|ZP_14072217.1| type III restriction enzyme, res subunit [Streptococcus pneumoniae
GA47794]
gi|421220457|ref|ZP_15677300.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070425]
gi|421220618|ref|ZP_15677458.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070425]
gi|421222921|ref|ZP_15679704.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070531]
gi|421223836|ref|ZP_15680595.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070531]
gi|421245343|ref|ZP_15701841.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081685]
gi|421268645|ref|ZP_15719514.1| type III restriction enzyme, res subunit [Streptococcus pneumoniae
SPAR95]
gi|421275214|ref|ZP_15726043.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52612]
gi|421279226|ref|ZP_15730032.1| type III restriction enzyme, res subunit [Streptococcus pneumoniae
GA17301]
gi|421294527|ref|ZP_15745249.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA56113]
gi|421301307|ref|ZP_15751977.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA19998]
gi|147928649|gb|EDK79663.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP9-BS68]
gi|183572004|gb|EDT92532.1| dead rna helicase [Streptococcus pneumoniae SP195]
gi|183578269|gb|EDT98797.1| dead rna helicase [Streptococcus pneumoniae MLV-016]
gi|194357942|gb|ACF56390.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
gi|332072276|gb|EGI82759.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17570]
gi|353792393|gb|EHD72765.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44194]
gi|353796030|gb|EHD76375.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44511]
gi|353811736|gb|EHD91975.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13856]
gi|353854973|gb|EHE34943.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47388]
gi|353886272|gb|EHE66054.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08780]
gi|379584181|gb|EHZ49058.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43257]
gi|379592763|gb|EHZ57578.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47179]
gi|379605222|gb|EHZ69973.1| type III restriction enzyme, res subunit [Streptococcus pneumoniae
GA47794]
gi|379608300|gb|EHZ73046.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49194]
gi|379610967|gb|EHZ75695.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49542]
gi|379625773|gb|EHZ90399.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP03]
gi|395584050|gb|EJG44463.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070531]
gi|395586850|gb|EJG47213.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070425]
gi|395587269|gb|EJG47626.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070531]
gi|395587417|gb|EJG47770.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070425]
gi|395607870|gb|EJG67966.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081685]
gi|395868899|gb|EJG80015.1| type III restriction enzyme, res subunit [Streptococcus pneumoniae
SPAR95]
gi|395873178|gb|EJG84270.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52612]
gi|395878719|gb|EJG89781.1| type III restriction enzyme, res subunit [Streptococcus pneumoniae
GA17301]
gi|395893666|gb|EJH04650.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA56113]
gi|395898867|gb|EJH09811.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA19998]
Length = 360
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|323494504|ref|ZP_08099609.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
gi|323311231|gb|EGA64390.1| ATP-dependent RNA helicase [Vibrio brasiliensis LMG 20546]
Length = 416
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 14/155 (9%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A++V +K++ H TV++ G +++ Q+ LR + +V+T
Sbjct: 87 LILVPTRELASQV---AYNVKSYSYHLRDKVKTVAVFGGVSVNPQMLALRGGS-DIVVAT 142
Query: 314 PERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTY 370
P RLL LVS AI + V LV+ DR+ SL D L+ I + + K T++F+
Sbjct: 143 PGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTDELNKILELLPEKKQTLLFSATFPD 202
Query: 371 TSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVN 405
Q+LL + + L + AS + SVN
Sbjct: 203 KVTTLAQHLLREPVE-VQLQSAEASTLVQRVFSVN 236
>gi|387626719|ref|YP_006062895.1| putative RNA helicase [Streptococcus pneumoniae INV104]
gi|417694380|ref|ZP_12343567.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47901]
gi|444383686|ref|ZP_21181870.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PCS8106]
gi|444386537|ref|ZP_21184585.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PCS8203]
gi|301794505|emb|CBW36944.1| putative RNA helicase [Streptococcus pneumoniae INV104]
gi|332200929|gb|EGJ15000.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47901]
gi|444247474|gb|ELU54026.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PCS8203]
gi|444248567|gb|ELU55071.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PCS8106]
Length = 360
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|168486177|ref|ZP_02710685.1| dead rna helicase [Streptococcus pneumoniae CDC1087-00]
gi|419510029|ref|ZP_14049673.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP141]
gi|419530165|ref|ZP_14069696.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40028]
gi|421214998|ref|ZP_15671929.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070109]
gi|421216355|ref|ZP_15673264.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070109]
gi|183570755|gb|EDT91283.1| dead rna helicase [Streptococcus pneumoniae CDC1087-00]
gi|379574905|gb|EHZ39843.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40028]
gi|379633222|gb|EHZ97791.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP141]
gi|395577910|gb|EJG38440.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070109]
gi|395582557|gb|EJG43019.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070109]
Length = 360
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRAHQLVYMSATT 180
>gi|336370677|gb|EGN99017.1| hypothetical protein SERLA73DRAFT_137127 [Serpula lacrymans var.
lacrymans S7.3]
Length = 332
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFG----IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
GP L L ++E A +++ C FG I +++ GA QI L+ E ++
Sbjct: 15 GPIALVLAPTRELAVQIQQECT---KFGSSSRIRNTAIYGGAPKGPQIRDLQRGV-EVVI 70
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KP--HTVVFNDCL 368
+TP RL+ ++ + ++ ++ LV+D D + IR+ +S +P T++F+
Sbjct: 71 ATPGRLIDMLETQKTNLRRITYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLMFSATW 130
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
V + N L + ++++ + + I Q V VC SD EK K I+ L D
Sbjct: 131 P-KDVQKLANDFLKDMIQVNIGSMELTANHNIQQIVEVC-SDFEKRAKLIKHL-----DQ 183
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
+E KVL VG ++ L+ G+
Sbjct: 184 ISAENAKVLIFVGTKRVADDITKYLRQDGW 213
>gi|307126949|ref|YP_003878980.1| dead rna helicase [Streptococcus pneumoniae 670-6B]
gi|417677206|ref|ZP_12326614.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17545]
gi|418096574|ref|ZP_12733685.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16531]
gi|418132275|ref|ZP_12769150.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11304]
gi|418155463|ref|ZP_12792191.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16242]
gi|418225861|ref|ZP_12852489.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP112]
gi|419467027|ref|ZP_14006909.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05248]
gi|419512809|ref|ZP_14052443.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05578]
gi|419517083|ref|ZP_14056699.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02506]
gi|421283613|ref|ZP_15734400.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA04216]
gi|421298892|ref|ZP_15749579.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA60080]
gi|306484011|gb|ADM90880.1| dead rna helicase [Streptococcus pneumoniae 670-6B]
gi|332074234|gb|EGI84711.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17545]
gi|353768295|gb|EHD48819.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16531]
gi|353807941|gb|EHD88210.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11304]
gi|353820322|gb|EHE00508.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16242]
gi|353881058|gb|EHE60872.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP112]
gi|379543740|gb|EHZ08889.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05248]
gi|379637279|gb|EIA01837.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05578]
gi|379639156|gb|EIA03700.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02506]
gi|395881576|gb|EJG92625.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA04216]
gi|395900363|gb|EJH11301.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA60080]
Length = 360
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|298230913|ref|ZP_06964594.1| putative RNA helicase [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298255002|ref|ZP_06978588.1| putative RNA helicase [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298502564|ref|YP_003724504.1| ATP-dependent RNA helicase [Streptococcus pneumoniae TCH8431/19A]
gi|387787939|ref|YP_006253007.1| ATP-dependent RNA helicase DeaD [Streptococcus pneumoniae ST556]
gi|417312959|ref|ZP_12099671.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04375]
gi|418084850|ref|ZP_12722036.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47281]
gi|418092083|ref|ZP_12729224.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44452]
gi|418094269|ref|ZP_12731396.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49138]
gi|418100461|ref|ZP_12737549.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7286-06]
gi|418120133|ref|ZP_12757084.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18523]
gi|418141993|ref|ZP_12778806.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13455]
gi|418150892|ref|ZP_12787639.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14798]
gi|418164745|ref|ZP_12801415.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17371]
gi|418195636|ref|ZP_12832116.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47688]
gi|418198239|ref|ZP_12834699.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47778]
gi|418223468|ref|ZP_12850109.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5185-06]
gi|418227990|ref|ZP_12854607.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
3063-00]
gi|419425425|ref|ZP_13965622.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7533-05]
gi|419426934|ref|ZP_13967117.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5652-06]
gi|419429556|ref|ZP_13969723.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11856]
gi|419436274|ref|ZP_13976363.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
8190-05]
gi|419438512|ref|ZP_13978581.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13499]
gi|419444390|ref|ZP_13984405.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19923]
gi|419449034|ref|ZP_13989031.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4075-00]
gi|419450752|ref|ZP_13990739.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP02]
gi|419502135|ref|ZP_14041819.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47628]
gi|419519193|ref|ZP_14058799.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08825]
gi|419528813|ref|ZP_14068355.1| type III restriction enzyme, res subunit [Streptococcus pneumoniae
GA17719]
gi|421287265|ref|ZP_15738031.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA58771]
gi|298238159|gb|ADI69290.1| ATP-dependent RNA helicase [Streptococcus pneumoniae TCH8431/19A]
gi|327389667|gb|EGE88012.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04375]
gi|353760085|gb|EHD40667.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47281]
gi|353763438|gb|EHD43992.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44452]
gi|353764765|gb|EHD45313.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49138]
gi|353773170|gb|EHD53669.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7286-06]
gi|353789246|gb|EHD69642.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18523]
gi|353806244|gb|EHD86518.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13455]
gi|353814775|gb|EHD94998.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14798]
gi|353829606|gb|EHE09737.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17371]
gi|353862163|gb|EHE42096.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47688]
gi|353862877|gb|EHE42807.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47778]
gi|353879594|gb|EHE59420.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5185-06]
gi|353880385|gb|EHE60200.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
3063-00]
gi|379137681|gb|AFC94472.1| ATP-dependent RNA helicase DeaD [Streptococcus pneumoniae ST556]
gi|379537571|gb|EHZ02754.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13499]
gi|379551504|gb|EHZ16599.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11856]
gi|379564836|gb|EHZ29832.1| type III restriction enzyme, res subunit [Streptococcus pneumoniae
GA17719]
gi|379572083|gb|EHZ37040.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19923]
gi|379600348|gb|EHZ65129.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47628]
gi|379613790|gb|EHZ78501.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
8190-05]
gi|379618387|gb|EHZ83062.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5652-06]
gi|379619862|gb|EHZ84532.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7533-05]
gi|379624092|gb|EHZ88725.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4075-00]
gi|379624651|gb|EHZ89282.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP02]
gi|379641030|gb|EIA05568.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08825]
gi|395889674|gb|EJH00681.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA58771]
Length = 360
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|242240743|ref|YP_002988924.1| ATP-dependent RNA helicase DeaD [Dickeya dadantii Ech703]
gi|242132800|gb|ACS87102.1| DEAD/DEAH box helicase domain protein [Dickeya dadantii Ech703]
Length = 621
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 17/170 (10%)
Query: 176 SKFLILCLNA-IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIA 234
+ F L L+A I NA+ G E+ +P+ E + +D+L + + S
Sbjct: 6 TSFADLGLSAPILNALSDMGYEKPSPIQA-----ECIPHLLNGRDVLGMAQTGSG----- 55
Query: 235 WIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK--AFGIHTVSLHPG 292
TAA S+ P +L L ++E A +V C G++ V+L+ G
Sbjct: 56 ---KTAAFSLPLLNNVNPELKAPQILVLAPTRELAVQVAEACGEFSKHMHGVNVVALYGG 112
Query: 293 AAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
D Q+ LR P+ +V TP RLL + +D+S +S LV+D D +
Sbjct: 113 QRYDVQLRALRQG-PQVVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEM 161
>gi|148990294|ref|ZP_01821505.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP6-BS73]
gi|149019431|ref|ZP_01834793.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP23-BS72]
gi|168493384|ref|ZP_02717527.1| dead rna helicase [Streptococcus pneumoniae CDC3059-06]
gi|221232206|ref|YP_002511359.1| RNA helicase [Streptococcus pneumoniae ATCC 700669]
gi|415699359|ref|ZP_11457629.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
459-5]
gi|415749897|ref|ZP_11477841.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV35]
gi|415752584|ref|ZP_11479695.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV36]
gi|418074310|ref|ZP_12711563.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11184]
gi|418078918|ref|ZP_12716140.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4027-06]
gi|418080899|ref|ZP_12718110.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6735-05]
gi|418089835|ref|ZP_12726990.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43265]
gi|418098810|ref|ZP_12735908.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6901-05]
gi|418103145|ref|ZP_12740218.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP070]
gi|418115009|ref|ZP_12751995.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5787-06]
gi|418117164|ref|ZP_12754133.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6963-05]
gi|418123819|ref|ZP_12760750.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44378]
gi|418128363|ref|ZP_12765256.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP170]
gi|418134547|ref|ZP_12771405.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11426]
gi|418137550|ref|ZP_12774388.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11663]
gi|418173823|ref|ZP_12810435.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41277]
gi|418178538|ref|ZP_12815121.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41565]
gi|418183050|ref|ZP_12819609.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43380]
gi|419431868|ref|ZP_13972002.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP05]
gi|419433023|ref|ZP_13973143.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40183]
gi|419440665|ref|ZP_13980712.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40410]
gi|419465124|ref|ZP_14005015.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04175]
gi|419469294|ref|ZP_14009163.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA06083]
gi|419473550|ref|ZP_14013399.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13430]
gi|419475806|ref|ZP_14015644.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14688]
gi|419486964|ref|ZP_14026726.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44128]
gi|419495107|ref|ZP_14034827.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47461]
gi|419497856|ref|ZP_14037563.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47522]
gi|419534935|ref|ZP_14074435.1| type III restriction enzyme, res subunit [Streptococcus pneumoniae
GA17457]
gi|421209264|ref|ZP_15666277.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070005]
gi|421210796|ref|ZP_15667784.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070035]
gi|421225313|ref|ZP_15682052.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070768]
gi|421232201|ref|ZP_15688842.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080076]
gi|421240956|ref|ZP_15697501.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080913]
gi|421281421|ref|ZP_15732218.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA04672]
gi|421302620|ref|ZP_15753285.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA17484]
gi|421309890|ref|ZP_15760515.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA62681]
gi|147924433|gb|EDK75523.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP6-BS73]
gi|147931301|gb|EDK82280.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP23-BS72]
gi|183576665|gb|EDT97193.1| dead rna helicase [Streptococcus pneumoniae CDC3059-06]
gi|220674667|emb|CAR69236.1| putative RNA helicase [Streptococcus pneumoniae ATCC 700669]
gi|353746445|gb|EHD27105.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4027-06]
gi|353748379|gb|EHD29031.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11184]
gi|353752428|gb|EHD33055.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6735-05]
gi|353761381|gb|EHD41950.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43265]
gi|353769300|gb|EHD49819.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6901-05]
gi|353775043|gb|EHD55526.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP070]
gi|353785093|gb|EHD65512.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5787-06]
gi|353787845|gb|EHD68243.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
6963-05]
gi|353795639|gb|EHD75985.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44378]
gi|353798862|gb|EHD79185.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP170]
gi|353837779|gb|EHE17860.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41277]
gi|353842597|gb|EHE22643.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41565]
gi|353848404|gb|EHE28418.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43380]
gi|353900505|gb|EHE76056.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11663]
gi|353903137|gb|EHE78663.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11426]
gi|379536724|gb|EHZ01910.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04175]
gi|379544929|gb|EHZ10072.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA06083]
gi|379550714|gb|EHZ15810.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13430]
gi|379559498|gb|EHZ24526.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14688]
gi|379563732|gb|EHZ28732.1| type III restriction enzyme, res subunit [Streptococcus pneumoniae
GA17457]
gi|379578146|gb|EHZ43060.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40183]
gi|379578386|gb|EHZ43299.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40410]
gi|379585333|gb|EHZ50189.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44128]
gi|379597471|gb|EHZ62274.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47461]
gi|379598689|gb|EHZ63474.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47522]
gi|379629359|gb|EHZ93957.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP05]
gi|381310280|gb|EIC51113.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV36]
gi|381316157|gb|EIC56912.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
459-5]
gi|381318191|gb|EIC58916.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV35]
gi|395573360|gb|EJG33950.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070005]
gi|395574669|gb|EJG35246.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070035]
gi|395589365|gb|EJG49684.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070768]
gi|395594704|gb|EJG54939.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080076]
gi|395607334|gb|EJG67431.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080913]
gi|395880686|gb|EJG91737.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA04672]
gi|395903434|gb|EJH14366.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA17484]
gi|395909505|gb|EJH20380.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA62681]
Length = 360
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|392568072|gb|EIW61246.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 830
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 112/255 (43%), Gaps = 27/255 (10%)
Query: 216 SAKDILET--SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
S +D++ +GS TI + + D ++ EG P + + ++E A ++
Sbjct: 206 SGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLEQMEG-----PVAVIMTPTRELAVQIH 260
Query: 274 SVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLV---SLKAIDVS 329
CKP L+ + V + G+ I QI ++ E +V TP R++ L+ S + ++
Sbjct: 261 RECKPFLRVLNLRAVCAYGGSPIKDQIAEMKKGA-EIIVCTPGRMIDLLTANSGRVTNLK 319
Query: 330 GVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINR 386
V+ LV+ DR+ + + I +I TV+F+ + P + L I R
Sbjct: 320 RVTYLVLDEADRMFDMGFEPQVMKIVNNIRPDRQTVLFS-----ATFPRQMDSLARKILR 374
Query: 387 LSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEP-LKVLYIVGKD 443
L +V +S A I+ + ++ K + +++L G ++ +P + L V +
Sbjct: 375 KPLEITVGGRSVVAPEIEQIVEVRDEDSKFNRLLEIL----GQTYNEDPECRTLIFVDRQ 430
Query: 444 SKFQNLVSTLKCKGY 458
NL+ L KGY
Sbjct: 431 EGADNLLRELMRKGY 445
>gi|212542881|ref|XP_002151595.1| DEAD/DEAH box RNA helicase [Talaromyces marneffei ATCC 18224]
gi|210066502|gb|EEA20595.1| DEAD/DEAH box RNA helicase [Talaromyces marneffei ATCC 18224]
Length = 1207
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 15/222 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 648 GPISLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIVVCTP 706
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 707 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMTNIRPNKQTVLFSATF 766
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L+ + + +SV + I Q V V ++ K L+ +++L + Y D
Sbjct: 767 PRNMEALARKTLIKPVEIIVGGRSVVAPE--ITQIVEV-RNENTKFLRLLELLGNLYSDE 823
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+ E + L V + +L+ L KGY SI G + I
Sbjct: 824 AN-EDARTLIFVDRQEAADSLLRELMRKGYPCMSIHGGKDQI 864
>gi|149008106|ref|ZP_01831637.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP18-BS74]
gi|147760412|gb|EDK67390.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP18-BS74]
Length = 341
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|325972264|ref|YP_004248455.1| DEAD/DEAH box helicase [Sphaerochaeta globus str. Buddy]
gi|324027502|gb|ADY14261.1| DEAD/DEAH box helicase domain protein [Sphaerochaeta globus str.
Buddy]
Length = 378
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 21/95 (22%)
Query: 259 LLFLVSSQEKAAKVRSV-----------CKPLKAFGIHTVSLHPGAAIDHQITGLRSCEP 307
+L +V ++E AA+V SV K L AFG G +I+ Q+ + +
Sbjct: 76 VLVMVPTRELAAQVHSVFSQYIHESGLRIKTLAAFG--------GVSINPQMMAMNNVS- 126
Query: 308 EFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
LV+TP RLL+LVSL A+++S V ++V+D D +
Sbjct: 127 -ILVATPGRLLELVSLHAVNLSSVEMVVLDEADKM 160
>gi|168483906|ref|ZP_02708858.1| dead rna helicase [Streptococcus pneumoniae CDC1873-00]
gi|417696646|ref|ZP_12345824.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47368]
gi|418076676|ref|ZP_12713910.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47502]
gi|418107902|ref|ZP_12744939.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41410]
gi|418110434|ref|ZP_12747455.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49447]
gi|418169485|ref|ZP_12806127.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19077]
gi|418176269|ref|ZP_12812862.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41437]
gi|418194069|ref|ZP_12830559.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47439]
gi|418219197|ref|ZP_12845863.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP127]
gi|418221510|ref|ZP_12848163.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47751]
gi|418239019|ref|ZP_12865571.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419423664|ref|ZP_13963877.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43264]
gi|419460287|ref|ZP_14000216.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02270]
gi|419462635|ref|ZP_14002539.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02714]
gi|419489203|ref|ZP_14028952.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44386]
gi|419526189|ref|ZP_14065750.1| type III restriction enzyme, res subunit [Streptococcus pneumoniae
GA14373]
gi|421273035|ref|ZP_15723876.1| type III restriction enzyme, res subunit [Streptococcus pneumoniae
SPAR55]
gi|172042742|gb|EDT50788.1| dead rna helicase [Streptococcus pneumoniae CDC1873-00]
gi|332200044|gb|EGJ14117.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47368]
gi|353748111|gb|EHD28766.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47502]
gi|353778179|gb|EHD58647.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41410]
gi|353781831|gb|EHD62271.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49447]
gi|353834076|gb|EHE14181.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19077]
gi|353841024|gb|EHE21083.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41437]
gi|353858923|gb|EHE38881.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47439]
gi|353874333|gb|EHE54189.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP127]
gi|353874820|gb|EHE54674.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47751]
gi|353893203|gb|EHE72950.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|379530924|gb|EHY96161.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02714]
gi|379531292|gb|EHY96527.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02270]
gi|379557809|gb|EHZ22848.1| type III restriction enzyme, res subunit [Streptococcus pneumoniae
GA14373]
gi|379586236|gb|EHZ51090.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43264]
gi|379586745|gb|EHZ51595.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44386]
gi|395874238|gb|EJG85324.1| type III restriction enzyme, res subunit [Streptococcus pneumoniae
SPAR55]
Length = 360
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|307709111|ref|ZP_07645570.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
gi|307620057|gb|EFN99174.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
Length = 360
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|256074313|ref|XP_002573470.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
gi|353228918|emb|CCD75089.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 875
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 198 DNPLFVNSWGIEFWKCYSSAKDIL----ETSGSSSTIVQIAWIVATAADSIARKEKEGFS 253
D+P + G W S +D++ SG +++ + A + A A S+ R +
Sbjct: 98 DSPTPIQCQG---WPVALSGRDLVGIAQTGSGKTASFLLPAIVHAKAQPSLKRGD----- 149
Query: 254 FTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVS 312
GP +L LV ++E A +V V + + G + L+ GA+ Q L PE +++
Sbjct: 150 --GPIVLILVPTRELAQQVEKVAEDFCYSAGFKSACLYGGASRTGQAEAL-GQSPEVVIA 206
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
TP RLL + + ++ + LV+D D +
Sbjct: 207 TPGRLLDFLESRHTNMRRCTYLVLDEADRM 236
>gi|188589982|ref|YP_001922621.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
Alaska E43]
gi|251781234|ref|ZP_04824150.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|188500263|gb|ACD53399.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E3 str.
Alaska E43]
gi|243081681|gb|EES47742.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 526
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 9/153 (5%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L ++E A +V K L + + + ++ G +ID QI LR + +V TP R+L
Sbjct: 75 LILAPTRELAVQVNDELKKLSKYEKANVLPVYGGESIDRQIRALRKDNIDIVVGTPGRVL 134
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCLTYTSVPA 375
L++ K + ++ V LV+D D + + I IS P T++F+ +
Sbjct: 135 DLINRKILKLNTVDFLVLDEADEMLNMGFIDDIETIISNTPAERQTLLFSATMPAPIAKL 194
Query: 376 VQNLLLG-----SINRLSLNQSVASQSACIIQS 403
+N + +I R SL S Q+ +I +
Sbjct: 195 AKNYMKADAKHVAIKRSSLTVSKIEQNYFMINN 227
>gi|421857957|ref|ZP_16290247.1| DNA and RNA helicase [Paenibacillus popilliae ATCC 14706]
gi|410832484|dbj|GAC40684.1| DNA and RNA helicase [Paenibacillus popilliae ATCC 14706]
Length = 418
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS- 341
GIH +L GAA++ Q+ LR +P+ +V TP R+ +L+ ++ + + V ++VVD +D
Sbjct: 92 GIHVTALIGGAALNRQVERLRD-KPQLVVGTPGRIRELIEMRKLKMHEVRMIVVDEVDHL 150
Query: 342 LSKG---DTLSLIRQSI 355
L KG DT IR ++
Sbjct: 151 LQKGGARDTDMAIRSAL 167
>gi|258570243|ref|XP_002543925.1| hypothetical protein UREG_03442 [Uncinocarpus reesii 1704]
gi|237904195|gb|EEP78596.1| hypothetical protein UREG_03442 [Uncinocarpus reesii 1704]
Length = 1206
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 17/223 (7%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 643 GPVGLVMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIIVCTP 701
Query: 315 ERLLKLV---SLKAIDVSGVSLLVVDRLDSL----SKGDTLSLIRQSISGKPHTVVFNDC 367
R++ L+ S + ++ V+ +V+D D + + + +I +I +V+F+
Sbjct: 702 GRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKII-GNIRPSRQSVLFSAT 760
Query: 368 LTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ L + + +SV + I Q V V + K ++ +++L + Y D
Sbjct: 761 FPRNMEALARKTLTKPVEIIVGGRSVVAPE--ITQIVEV-RPENTKFVRLLELLGNLYSD 817
Query: 428 HFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+ E + L V + L+ L KGY SI G + +
Sbjct: 818 DAN-EDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQV 859
>gi|225857109|ref|YP_002738620.1| DEAD RNA helicase [Streptococcus pneumoniae P1031]
gi|410476863|ref|YP_006743622.1| ATP-dependent RNA helicase [Streptococcus pneumoniae gamPNI0373]
gi|444387445|ref|ZP_21185467.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PCS125219]
gi|444389418|ref|ZP_21187335.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PCS70012]
gi|444392512|ref|ZP_21190234.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PCS81218]
gi|444396177|ref|ZP_21193709.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PNI0002]
gi|444397926|ref|ZP_21195409.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PNI0006]
gi|444399596|ref|ZP_21197043.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PNI0007]
gi|444403204|ref|ZP_21200315.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PNI0008]
gi|444407544|ref|ZP_21204211.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PNI0010]
gi|444411430|ref|ZP_21207848.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PNI0076]
gi|444412323|ref|ZP_21208645.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae PNI0153]
gi|444414454|ref|ZP_21210720.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PNI0199]
gi|444417152|ref|ZP_21213208.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PNI0360]
gi|444421446|ref|ZP_21217170.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PNI0427]
gi|444424174|ref|ZP_21219681.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PNI0446]
gi|225724912|gb|ACO20764.1| DEAD RNA helicase [Streptococcus pneumoniae P1031]
gi|406369808|gb|AFS43498.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae gamPNI0373]
gi|444253319|gb|ELU59777.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PCS125219]
gi|444255421|gb|ELU61776.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PNI0002]
gi|444258018|gb|ELU64351.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PCS70012]
gi|444260583|gb|ELU66891.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PNI0006]
gi|444263299|gb|ELU69488.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PCS81218]
gi|444264903|gb|ELU70943.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PNI0008]
gi|444268457|gb|ELU74311.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PNI0007]
gi|444271140|gb|ELU76891.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PNI0010]
gi|444272629|gb|ELU78323.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PNI0076]
gi|444274845|gb|ELU80487.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae PNI0153]
gi|444281950|gb|ELU87239.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PNI0199]
gi|444282374|gb|ELU87642.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PNI0427]
gi|444284453|gb|ELU89594.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PNI0360]
gi|444284893|gb|ELU89996.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PNI0446]
Length = 360
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|224825987|ref|ZP_03699090.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
gi|224601624|gb|EEG07804.1| DEAD/DEAH box helicase domain protein [Pseudogulbenkiania
ferrooxidans 2002]
Length = 562
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-TVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E AA+V + + H ++ + G I+ QI LR + LV+TP
Sbjct: 77 PRALVLTPTRELAAQVEESVRTYGKYLPHKSMVMFGGVGINPQIAALRKPL-DILVATPG 135
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RLL K +D+SGV +LV+D D +
Sbjct: 136 RLLDHAGQKTVDLSGVEILVLDEADRM 162
>gi|149004590|ref|ZP_01829275.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP14-BS69]
gi|237649557|ref|ZP_04523809.1| putative RNA helicase [Streptococcus pneumoniae CCRI 1974]
gi|237822411|ref|ZP_04598256.1| putative RNA helicase [Streptococcus pneumoniae CCRI 1974M2]
gi|419458081|ref|ZP_13998023.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02254]
gi|147757522|gb|EDK64549.1| ATP-dependent RNA helicase, DEAD/DEAH box family protein
[Streptococcus pneumoniae SP14-BS69]
gi|379529745|gb|EHY94986.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02254]
Length = 360
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|194468331|ref|ZP_03074317.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
100-23]
gi|194453184|gb|EDX42082.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
100-23]
Length = 457
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 265 SQEKAAKVRSVCKPLKAFGIHTVSLH---PGAAIDHQITGLRSCEPEFLVSTPERLLKLV 321
S+E A ++ + K L + H +++H G HQ+ L +P+ ++ TP R+L L+
Sbjct: 81 SRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTDKQHQVDQLSRKQPQLVIGTPGRVLDLI 140
Query: 322 SLKAIDVSGVSLLVVDRLD 340
+A+D+ + VVD D
Sbjct: 141 KSQALDIHTAKMFVVDEAD 159
>gi|393218978|gb|EJD04466.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 681
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
+L + ++E A + L K FG+ +V+++ G D Q L +V TP R+
Sbjct: 328 VLVVAPTRELALQTHETFTELGKPFGLTSVAVYGGVDKDPQRRALSQVGAAMVVGTPGRI 387
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDS-LSKG---DTLSLIRQ-SISGKPHTVVF 364
L LV+ A D+SGV+ LV+D D L KG D ++I Q + S + T++F
Sbjct: 388 LDLVNEGACDLSGVTYLVLDEADRMLDKGFENDIRAIIAQCAPSKQRQTLMF 439
>gi|392579156|gb|EIW72283.1| hypothetical protein TREMEDRAFT_41622 [Tremella mesenterica DSM
1558]
Length = 599
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 9/210 (4%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
+L L ++E A + + L + G+ +V L G D Q+ L + +V TP R+
Sbjct: 252 MLVLAPTRELAQQSHTTLLALGEKAGVGSVCLFGGVGKDDQLRELGKKTTKIVVGTPGRV 311
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFNDCLTYTS 372
L L K +D SGV+ LV+D D + + IR+ I+ P TV+F+ S
Sbjct: 312 LDLADSKELDFSGVTYLVLDEADRMLDQGFENDIRRIIAHCPENAHRQTVMFSATWP-ES 370
Query: 373 VPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHS- 431
V + + L R+++ S + I Q V V + +K + + L H +
Sbjct: 371 VRRLASTFLRDPLRITVGSDELSANKRIEQVVEVLDNGFQKDARMLHHLRAHLKAHPSTL 430
Query: 432 -EPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460
P ++L + Q L STL+ GY++
Sbjct: 431 KAPTRILVFALYKKEAQRLESTLRRNGYNV 460
>gi|350559286|ref|ZP_08928126.1| DEAD/DEAH box helicase domain protein, partial [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349781554|gb|EGZ35837.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 407
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
Query: 257 PFLLFLVSSQEKAAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E AA+V+ SV + + + ++ + G I+ QI LRS + +V+TP
Sbjct: 80 PRCLVLTPTRELAAQVQASVTEYGRYLKLRSMVVFGGVNINPQIQALRSPM-DIVVATPG 138
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHT 361
RLL V K +D+SGV +LV+D D + + IR+ + P T
Sbjct: 139 RLLDHVGQKTVDLSGVEILVLDEADRMLDMGFIHDIRRILKLLPAT 184
>gi|423335906|ref|ZP_17313657.1| ATP-dependent RNA helicase [Lactobacillus reuteri ATCC 53608]
gi|337729109|emb|CCC04232.1| ATP-dependent RNA helicase [Lactobacillus reuteri ATCC 53608]
Length = 457
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 265 SQEKAAKVRSVCKPLKAFGIHTVSLH---PGAAIDHQITGLRSCEPEFLVSTPERLLKLV 321
S+E A ++ + K L + H +++H G HQ+ L +P+ ++ TP R+L L+
Sbjct: 81 SRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTDKQHQVDQLSRKQPQLVIGTPGRVLDLI 140
Query: 322 SLKAIDVSGVSLLVVDRLD 340
+A+D+ + VVD D
Sbjct: 141 KSQALDIHTAKMFVVDEAD 159
>gi|336396246|ref|ZP_08577645.1| putative ATP-dependent RNA helicase [Lactobacillus farciminis KCTC
3681]
Length = 408
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 15/155 (9%)
Query: 211 WKCYSSAKDI--LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268
+ + KD+ + +GS T+ + ++ T K+G +L L SQE
Sbjct: 27 YMPFKEGKDLVAMAPTGSGKTLGFVMPMIETLV------PKDGLQ-----VLILEPSQEL 75
Query: 269 AAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
A +VR V +PL K +L GA Q+ L+ +PE +V+T RL +L + +
Sbjct: 76 AMQVRDVIQPLAKLVDCKVQALTGGANPTRQLKKLKE-KPEIIVATLGRLNELTEARKVK 134
Query: 328 VSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTV 362
+ ++ ++VD D + L +R++IS P V
Sbjct: 135 LGNLNTVIVDEADEMLNESKLESVRKTISQMPADV 169
>gi|148543767|ref|YP_001271137.1| DEAD/DEAH box helicase [Lactobacillus reuteri DSM 20016]
gi|184153173|ref|YP_001841514.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
gi|148530801|gb|ABQ82800.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri DSM
20016]
gi|183224517|dbj|BAG25034.1| ATP-dependent RNA helicase [Lactobacillus reuteri JCM 1112]
Length = 457
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 265 SQEKAAKVRSVCKPLKAFGIHTVSLH---PGAAIDHQITGLRSCEPEFLVSTPERLLKLV 321
S+E A ++ + K L + H +++H G HQ+ L +P+ ++ TP R+L L+
Sbjct: 81 SRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTDKQHQVDQLSRKQPQLVIGTPGRVLDLI 140
Query: 322 SLKAIDVSGVSLLVVDRLD 340
+A+D+ + VVD D
Sbjct: 141 KSQALDIHTAKMFVVDEAD 159
>gi|444405341|ref|ZP_21202250.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PNI0009]
gi|444274250|gb|ELU79903.1| DEAD/DEAH box helicase [Streptococcus pneumoniae PNI0009]
Length = 351
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|256074311|ref|XP_002573469.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
gi|353228919|emb|CCD75090.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 879
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 198 DNPLFVNSWGIEFWKCYSSAKDIL----ETSGSSSTIVQIAWIVATAADSIARKEKEGFS 253
D+P + G W S +D++ SG +++ + A + A A S+ R +
Sbjct: 98 DSPTPIQCQG---WPVALSGRDLVGIAQTGSGKTASFLLPAIVHAKAQPSLKRGD----- 149
Query: 254 FTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVS 312
GP +L LV ++E A +V V + + G + L+ GA+ Q L PE +++
Sbjct: 150 --GPIVLILVPTRELAQQVEKVAEDFCYSAGFKSACLYGGASRTGQAEAL-GQSPEVVIA 206
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
TP RLL + + ++ + LV+D D +
Sbjct: 207 TPGRLLDFLESRHTNMRRCTYLVLDEADRM 236
>gi|399023031|ref|ZP_10725098.1| DNA/RNA helicase, superfamily II [Chryseobacterium sp. CF314]
gi|398083590|gb|EJL74295.1| DNA/RNA helicase, superfamily II [Chryseobacterium sp. CF314]
Length = 565
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 17/136 (12%)
Query: 269 AAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDV 328
A +++ K +K I T +++ G++I QI L+ +P+ +V TP R++ L++ KA+D
Sbjct: 88 AKDIKNYSKYMK--DIKTTAVYGGSSIMEQIRSLKD-KPQIIVGTPGRVIDLINRKALDF 144
Query: 329 SGVSLLVVDRLDS-LSKG--DTLSLIRQSISGKPHTVVFNDCL---------TYTSVPAV 376
S + LV+D D LS G D L I T +F+ + Y + P
Sbjct: 145 SAIHWLVLDEADEMLSMGFKDELETILSETPETKQTFLFSATMNKEVERISKNYLTKP-- 202
Query: 377 QNLLLGSINRLSLNQS 392
+ +GSIN + N S
Sbjct: 203 HRISVGSINEVKKNIS 218
>gi|421227663|ref|ZP_15684366.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2072047]
gi|395594364|gb|EJG54601.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2072047]
Length = 389
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|260663391|ref|ZP_05864282.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
gi|260552243|gb|EEX25295.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
Length = 460
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 265 SQEKAAKVRSVCKPLKAFGIHTVSLH---PGAAIDHQITGLRSCEPEFLVSTPERLLKLV 321
S+E A ++ + K L F +++H G +HQ+ L +P+ ++ TP R+L L+
Sbjct: 80 SRELAYQIYNAAKQLNRFATTPLTIHNYVGGTDKEHQVEQLNRRQPQLVIGTPGRILDLI 139
Query: 322 SLKAIDVSGVSLLVVDRLD-SLSKG--DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQN 378
+ +A+D+ S V+D D +L G +T+ I K +VF+ + P ++
Sbjct: 140 NSQALDIHTASQFVIDEADMTLDMGFLETVDQIAARFPEKLQMMVFSATIPQGLRPFLKK 199
Query: 379 LL 380
L
Sbjct: 200 YL 201
>gi|406587322|ref|ZP_11062220.1| ATP-dependent RNA helicase [Streptococcus sp. GMD1S]
gi|419813592|ref|ZP_14338405.1| ATP-dependent RNA helicase [Streptococcus sp. GMD2S]
gi|419816955|ref|ZP_14341126.1| ATP-dependent RNA helicase [Streptococcus sp. GMD4S]
gi|404466496|gb|EKA11828.1| ATP-dependent RNA helicase [Streptococcus sp. GMD4S]
gi|404472703|gb|EKA17118.1| ATP-dependent RNA helicase [Streptococcus sp. GMD2S]
gi|404473201|gb|EKA17554.1| ATP-dependent RNA helicase [Streptococcus sp. GMD1S]
Length = 360
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|417948503|ref|ZP_12591648.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
splendidus ATCC 33789]
gi|342809673|gb|EGU44783.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
splendidus ATCC 33789]
Length = 443
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 15/199 (7%)
Query: 216 SAKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
+ KD+L +S GS T+ + ++ A + A FS P + L ++E A +V
Sbjct: 37 AGKDLLASSKTGSGKTLAFVLPMIHKALKTKA------FSARDPRGVILAPTRELAKQVY 90
Query: 274 SVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332
+ L + G + Q+ LR P F+V+TP RL + +++ + GV
Sbjct: 91 GELRSMLGGLSYEATLILGGENFNDQVKALRKY-PRFIVATPGRLADHLEHRSLFLDGVE 149
Query: 333 LLVVDRLDSLSKGDTLSLIRQSISGKPH----TVVFNDCLTYTSVPAVQNLLLGSINRLS 388
L++D D + +R+ + H T++F+ L + V + N +L + R+S
Sbjct: 150 TLILDEADRMLDLGFAPELRRIANAAKHRRRQTLMFSATLDHAEVNDIANEMLDAPKRIS 209
Query: 389 LNQSVASQSACIIQSVNVC 407
+ S Q I Q +C
Sbjct: 210 VGVS-NEQHLDITQKFYLC 227
>gi|146319288|ref|YP_001199000.1| superfamily II DNA/RNA helicase [Streptococcus suis 05ZYH33]
gi|146321492|ref|YP_001201203.1| superfamily II DNA/RNA helicase [Streptococcus suis 98HAH33]
gi|253752324|ref|YP_003025465.1| RNA helicase [Streptococcus suis SC84]
gi|253754150|ref|YP_003027291.1| RNA helicase [Streptococcus suis P1/7]
gi|253756084|ref|YP_003029224.1| RNA helicase [Streptococcus suis BM407]
gi|386578458|ref|YP_006074864.1| helicase [Streptococcus suis GZ1]
gi|386580530|ref|YP_006076935.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
gi|386582604|ref|YP_006079008.1| superfamily II DNA/RNA helicase [Streptococcus suis SS12]
gi|386588727|ref|YP_006085128.1| superfamily II DNA/RNA helicase [Streptococcus suis A7]
gi|403062076|ref|YP_006650292.1| superfamily II DNA/RNA helicase [Streptococcus suis S735]
gi|145690094|gb|ABP90600.1| Superfamily II DNA and RNA helicase [Streptococcus suis 05ZYH33]
gi|145692298|gb|ABP92803.1| Superfamily II DNA and RNA helicase [Streptococcus suis 98HAH33]
gi|251816613|emb|CAZ52252.1| putative RNA helicase [Streptococcus suis SC84]
gi|251818548|emb|CAZ56380.1| putative RNA helicase [Streptococcus suis BM407]
gi|251820396|emb|CAR47007.1| putative RNA helicase [Streptococcus suis P1/7]
gi|292558921|gb|ADE31922.1| helicase [Streptococcus suis GZ1]
gi|319758722|gb|ADV70664.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
gi|353734750|gb|AER15760.1| superfamily II DNA/RNA helicase [Streptococcus suis SS12]
gi|354985888|gb|AER44786.1| superfamily II DNA/RNA helicase [Streptococcus suis A7]
gi|402809402|gb|AFR00894.1| superfamily II DNA/RNA helicase [Streptococcus suis S735]
Length = 360
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK + G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFEVCKTWSETIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
+L+ LK I + ++ +V+D D L + + I+ P H +++
Sbjct: 127 FELIKLKKIKMMNINTIVLDEFDQLFSDSQYQFVEKIINYVPRDHQLIY 175
>gi|389857140|ref|YP_006359383.1| DEAD/DEAH box helicase [Streptococcus suis ST1]
gi|353740858|gb|AER21865.1| DEAD/DEAH box helicase domain protein [Streptococcus suis ST1]
Length = 360
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK + G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFEVCKTWSETIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
+L+ LK I + ++ +V+D D L + + I+ P H +++
Sbjct: 127 FELIKLKKIKMMNINTIVLDEFDQLFSDSQYQFVEKIINYVPRDHQLIY 175
>gi|322376426|ref|ZP_08050919.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
M334]
gi|321282233|gb|EFX59240.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
M334]
Length = 360
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|184154996|ref|YP_001843336.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
gi|183226340|dbj|BAG26856.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
Length = 460
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 265 SQEKAAKVRSVCKPLKAFGIHTVSLH---PGAAIDHQITGLRSCEPEFLVSTPERLLKLV 321
S+E A ++ + K L F +++H G +HQ+ L +P+ ++ TP R+L L+
Sbjct: 80 SRELAYQIYNAAKQLNRFATTPLTIHNYVGGTDKEHQVEQLNRRQPQLVIGTPGRILDLI 139
Query: 322 SLKAIDVSGVSLLVVDRLD-SLSKG--DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQN 378
+ +A+D+ S V+D D +L G +T+ I K +VF+ + P ++
Sbjct: 140 NSQALDIHTASQFVIDEADMTLDMGFLETVDQIAARFPEKLQMMVFSATIPQGLRPFLKK 199
Query: 379 LL 380
L
Sbjct: 200 YL 201
>gi|258516456|ref|YP_003192678.1| DEAD/DEAH box helicase [Desulfotomaculum acetoxidans DSM 771]
gi|257780161|gb|ACV64055.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum acetoxidans
DSM 771]
Length = 446
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 27/206 (13%)
Query: 172 LDCPSKFLILCLN-AIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETS--GSSS 228
L+ FL+L + I + +R +G+ + P+ V + + + KD+L S G+
Sbjct: 7 LNVSKDFLLLGIRRKINDFLRENGITEPTPIQVQAIPV-----LMTGKDLLAQSQTGTGK 61
Query: 229 TIVQIAWIVATAADSIARKEKEGFSFTGPFL--LFLVSSQEKAAKVRSVCKPL-KAFGIH 285
T+ + ++ E P + L + ++E A ++ K L GI+
Sbjct: 62 TLAFLLPVL------------EKIEVNKPQVQSLIITPTRELALQITGEAKNLGDKLGIN 109
Query: 286 TVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKG 345
+S++ G ++ QI L+ ++ TP RLL + K I +SGVS LV+D D +
Sbjct: 110 ILSVYGGQDVERQIKKLKG-HIHMVIGTPGRLLDHIRRKTISLSGVSKLVLDEADQMLHM 168
Query: 346 DTLSLIRQSISGKP---HTVVFNDCL 368
L + + I P T++F+ L
Sbjct: 169 GFLEDVEEIIRKSPVKKQTMLFSATL 194
>gi|187933940|ref|YP_001887642.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
Eklund 17B]
gi|187722093|gb|ACD23314.1| ATP-dependent RNA helicase DbpA [Clostridium botulinum B str.
Eklund 17B]
Length = 526
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 9/151 (5%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L ++E A +V K L + + + ++ G +ID QI LR + +V TP R+L
Sbjct: 75 LILAPTRELAVQVNDELKKLSKYEKANVLPVYGGESIDRQIRALRRDNIDIVVGTPGRVL 134
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCLTYTSVPA 375
L++ K + ++ V LV+D D + + I IS P T++F+ +
Sbjct: 135 DLINRKILKLNTVDFLVLDEADEMLNMGFIEDIETIISNTPAERQTLLFSATMPAPIAKL 194
Query: 376 VQNLLLG-----SINRLSLNQSVASQSACII 401
+N + +I R SL S Q+ +I
Sbjct: 195 AKNYMKADAKHVAIKRSSLTVSKIEQNYFMI 225
>gi|227514534|ref|ZP_03944583.1| ATP-dependent RNA helicase [Lactobacillus fermentum ATCC 14931]
gi|227087091|gb|EEI22403.1| ATP-dependent RNA helicase [Lactobacillus fermentum ATCC 14931]
Length = 460
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 265 SQEKAAKVRSVCKPLKAFGIHTVSLH---PGAAIDHQITGLRSCEPEFLVSTPERLLKLV 321
S+E A ++ + K L F +++H G +HQ+ L +P+ ++ TP R+L L+
Sbjct: 80 SRELAYQIYNAAKQLNRFATTPLTIHNYVGGTDKEHQVEQLNRRQPQLVIGTPGRILDLI 139
Query: 322 SLKAIDVSGVSLLVVDRLD-SLSKG--DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQN 378
+ +A+D+ S V+D D +L G +T+ I K +VF+ + P ++
Sbjct: 140 NSQALDIHTASQFVIDEADMTLDMGFLETVDQIAARFPEKLQMMVFSATIPQGLRPFLKK 199
Query: 379 LL 380
L
Sbjct: 200 YL 201
>gi|386586711|ref|YP_006083113.1| DEAD/DEAH box helicase [Streptococcus suis D12]
gi|353738857|gb|AER19865.1| DEAD/DEAH box helicase domain protein [Streptococcus suis D12]
Length = 360
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK + G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKAWSETIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
+L+ LK I + ++ +V+D D L + + I+ P H +++
Sbjct: 127 FELIKLKKIKMMNINTIVLDEFDQLFSDSQYQFVEKIINYVPRDHQLIY 175
>gi|238026875|ref|YP_002911106.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
gi|237876069|gb|ACR28402.1| DEAD/DEAH box helicase-like protein [Burkholderia glumae BGR1]
Length = 524
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 18/190 (9%)
Query: 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQIT 300
R+++ P LL L ++E A +V + +G H TVS+ G A Q+
Sbjct: 121 RRQRRPQPVARPGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM 177
Query: 301 GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP- 359
L + PE LV+TP RLL + ID+S + +LV+D D + + I ++ P
Sbjct: 178 -LLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIETIVAATPA 236
Query: 360 --HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417
T++F+ L + ++ + LL R+ + Q + +++ I Q+V+ + K
Sbjct: 237 TRQTMLFSATLD-GKIGSLTSRLLKEPERIEIVQKLEART-NIAQTVHYVDDRDHK---- 290
Query: 418 IQVLDHAYGD 427
++LDH D
Sbjct: 291 DRLLDHLLRD 300
>gi|415706583|ref|ZP_11461572.1| ATP-dependent RNA helicase [Gardnerella vaginalis 0288E]
gi|388054795|gb|EIK77730.1| ATP-dependent RNA helicase [Gardnerella vaginalis 0288E]
Length = 617
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 247 KEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSC 305
K +E + P + L ++E ++ V PL A +G+HTV+++ G QI L+
Sbjct: 249 KNREDSNIPAPHAMILAPTRELVHQIDEVIAPLAAAYGMHTVTIYGGVRYQRQIAPLKQG 308
Query: 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLS 343
+ +V+ P RL L+ A+ + + + V+D D ++
Sbjct: 309 A-QIIVACPGRLEDLLKQGALTLENIEVSVLDEADEMA 345
>gi|417848513|ref|ZP_12494456.1| type III restriction enzyme, res subunit [Streptococcus mitis
SK1073]
gi|339452547|gb|EGP65173.1| type III restriction enzyme, res subunit [Streptococcus mitis
SK1073]
Length = 360
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|307706425|ref|ZP_07643234.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
gi|307618135|gb|EFN97293.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
Length = 360
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|237808150|ref|YP_002892590.1| DEAD/DEAH box helicase [Tolumonas auensis DSM 9187]
gi|237500411|gb|ACQ93004.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
Length = 468
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 6/146 (4%)
Query: 251 GFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEF 309
S GP L L ++E A +V + + L A +H + G + QI LR PE
Sbjct: 68 ALSTRGPRALILAPTRELAKQVYAQLRFLVAGTQVHCSLVLGGENFNDQIKALRKT-PEI 126
Query: 310 LVSTPERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGK-PHTVVFN 365
LV+TP RLL ++ ++ GV +LV+ DR+ L D L I + S + T +F+
Sbjct: 127 LVATPGRLLNHLTARSFLFDGVEILVLDEADRMLDLGFADALKAIHSAASHRLRQTWLFS 186
Query: 366 DCLTYTSVPAVQNLLLGSINRLSLNQ 391
L SV + +L + +S+ +
Sbjct: 187 ATLNNQSVEMLSGYILKAPQSISIGE 212
>gi|78486222|ref|YP_392147.1| DEAD/DEAH box helicase [Thiomicrospira crunogena XCL-2]
gi|78364508|gb|ABB42473.1| ATP-dependent RNA helicase [Thiomicrospira crunogena XCL-2]
Length = 401
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKA---FGIHTVSLHPGAAIDHQITGLRSCEPEFLVST 313
P +L L ++E A ++ V K L A F + V+ G A D Q+ L+S + + LV+T
Sbjct: 73 PRVLILAPTRELAFQIHKVVKQLGAHCPFESNVVT--GGFASDKQLEILQS-KIDILVAT 129
Query: 314 PERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKG-DTLSLIRQSISGKPHTVVFNDCLT 369
P RLL ++S + ID+S + LL++ DR+ + +G D L+LI ++I G F+ L
Sbjct: 130 PGRLLNIMSKEFIDLSDIELLIIDEADRMLDMGQGPDVLALI-EAIPGDFQAACFSATLA 188
Query: 370 YTSVPAVQNLLLGSINRLSLN 390
+ + +L S + +N
Sbjct: 189 GSGITKFAEEVLDSPEIIQVN 209
>gi|402226174|gb|EJU06234.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 734
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 96/215 (44%), Gaps = 20/215 (9%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP + + ++E A ++ CKP LK + V + G+ I QI ++ E +V TP
Sbjct: 195 GPMAIIMTPTRELAVQIHRECKPFLKVMNLRAVCAYGGSPIKDQIAEMKKGA-EIIVCTP 253
Query: 315 ERLLKLV---SLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCL 368
R++ L+ S + ++ V+ LV+ DR+ + + I +I TV+F+
Sbjct: 254 GRMIDLLTANSGRVTNLKRVTYLVLDEADRMFDMGFEPQVMKIVNNIRPDRQTVLFS--- 310
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHAYG 426
+ P + L I L +V +S A I+ + ++ K + +++L G
Sbjct: 311 --ATFPKQMDSLARKILHRPLEITVGGRSVVAPEIEQIVEVRPEDTKFNRLLEIL----G 364
Query: 427 DHFHSEP-LKVLYIVGKDSKFQNLVSTLKCKGYSI 460
++ +P + L V + NL+ L KGY +
Sbjct: 365 QTYNEDPECRTLIFVDRQEAADNLLRELMRKGYLV 399
>gi|158293651|ref|XP_315003.3| AGAP004912-PB [Anopheles gambiae str. PEST]
gi|157016550|gb|EAA10492.4| AGAP004912-PB [Anopheles gambiae str. PEST]
Length = 705
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Query: 200 PLFVNSWGIEFWKCYSSAKDI--LETSGSSSTIVQI--AWIVATAADSIARKEKEGFSFT 255
P F+ + G W S +D+ + +GS T+ I A + + IAR +
Sbjct: 127 PTFIQAVG---WSIAMSGRDMVGIAKTGSGKTLAYILPALVHISNQPRIARGD------- 176
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L L ++E A +++ VC + GI+ + GA+ Q + LR E +++TP
Sbjct: 177 GPIALVLAPTRELAQQIKQVCDDFGRRMGIYNTCVFGGASKYPQESDLRRGV-EIVIATP 235
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSIS 356
RL+ + + ++ + LV+D D + IR+ IS
Sbjct: 236 GRLIDFLERETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIS 277
>gi|89890271|ref|ZP_01201781.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
gi|89517186|gb|EAS19843.1| ATP-dependent RNA helicase [Flavobacteria bacterium BBFL7]
Length = 377
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 71/128 (55%), Gaps = 9/128 (7%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFG--IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E AA+V V P KA + T++++ GA+I+ Q+ + + + LV+TP R
Sbjct: 76 LILVPTRELAAQVSEVFIPYSKALTKPLITMAVYGGASINPQMRKMNNVD--ILVATPGR 133
Query: 317 LLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--DTLSLIRQSISGKPHTVVFNDCLTYTSV 373
LL+L+ A+ + V LV+D D L+KG L I + + K ++F+ L+ V
Sbjct: 134 LLELIEANAVHLKNVKALVLDEADKMLTKGFKKELDQILKLLPNKRQNLLFSATLS-EDV 192
Query: 374 PAVQNLLL 381
+Q +LL
Sbjct: 193 DELQRVLL 200
>gi|159040130|ref|YP_001539383.1| DEAD/DEAH box helicase [Salinispora arenicola CNS-205]
gi|157918965|gb|ABW00393.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola
CNS-205]
Length = 453
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L LV ++E A ++ SV PL +A + T+ + G A QITGLR+ + LV+ P
Sbjct: 79 PRALILVPTRELATQIDSVMAPLARALSLRTMVVFGGVAARPQITGLRAGV-DVLVACPG 137
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPH 360
RL V + V + V+D D ++ L +R+ + PH
Sbjct: 138 RLADHVQAGNAHLDAVEITVLDEADHMADLGFLPTVRRLLERTPH 182
>gi|223932914|ref|ZP_03624909.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
gi|302024276|ref|ZP_07249487.1| RNA helicase [Streptococcus suis 05HAS68]
gi|330833261|ref|YP_004402086.1| DEAD/DEAH box helicase domain-containing protein [Streptococcus
suis ST3]
gi|386584663|ref|YP_006081066.1| DEAD/DEAH box helicase [Streptococcus suis D9]
gi|223898360|gb|EEF64726.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
gi|329307484|gb|AEB81900.1| DEAD/DEAH box helicase domain protein [Streptococcus suis ST3]
gi|353736809|gb|AER17818.1| DEAD/DEAH box helicase domain protein [Streptococcus suis D9]
Length = 360
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK + G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWSETIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
+L+ LK I + ++ +V+D D L + + I+ P H +++
Sbjct: 127 FELIKLKKIKMMNINTIVLDEFDQLFSDSQYQFVEKIINYVPRDHQLIY 175
>gi|385812598|ref|YP_005848989.1| ATP-dependent RNA helicase [Lactobacillus fermentum CECT 5716]
gi|299783495|gb|ADJ41493.1| ATP-dependent RNA helicase [Lactobacillus fermentum CECT 5716]
Length = 439
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 252 FSFTGPFL-----------LFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQI 299
+FT P L L L SQE A + V + A G+ S GA + Q
Sbjct: 46 LAFTWPLLPKVMKGQGTQILVLEPSQELALQTTRVMREWAALLGLKVHSATGGANLRRQT 105
Query: 300 TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLI 351
L+ PE +V TP R+L L+ + + ++ ++ LV+D D L + DT +++
Sbjct: 106 ERLKKERPEVVVGTPGRILHLLDTRDLKLNNLATLVIDEADDLLRDDTQAVV 157
>gi|425745539|ref|ZP_18863583.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-323]
gi|425488547|gb|EKU54882.1| DEAD/DEAH box helicase [Acinetobacter baumannii WC-323]
Length = 383
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 23/224 (10%)
Query: 254 FTG-PFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
F G P L L ++E A ++ S + L F +H V+L G + Q L + +V
Sbjct: 75 FRGEPRALILAPTRELALQIESDAQALTKFSNLHLVTLLGGVDFEKQKKMLDRNFVDIIV 134
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFND 366
+TP RL+ V K + + + LV+D D L + +++ + P T++F+
Sbjct: 135 ATPGRLIDFVEQKEVWLDKIEFLVIDEADRLLDMGFIPSVKRIVRFSPFKEQRQTLMFSA 194
Query: 367 CLTYTSVPAVQNLLLGSIN-RLSLNQSVASQSACIIQSVNVCA-SDEEKILKGIQVLDHA 424
+Y + + L + + Q + + Q V V A D+ K+L+ I
Sbjct: 195 TFSYDVLNLARQWLFEPVTVEIEPEQKTNTD---VEQRVYVVAKEDKYKLLQEI------ 245
Query: 425 YGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
EP+ KV+ + + + L LK GY + S I
Sbjct: 246 ----LREEPIDKVMIFANRRDQVRRLYDHLKRDGYRVGMLSGEI 285
>gi|158293649|ref|XP_001688603.1| AGAP004912-PA [Anopheles gambiae str. PEST]
gi|157016549|gb|EDO63983.1| AGAP004912-PA [Anopheles gambiae str. PEST]
Length = 679
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 16/162 (9%)
Query: 200 PLFVNSWGIEFWKCYSSAKDI--LETSGSSSTIVQI--AWIVATAADSIARKEKEGFSFT 255
P F+ + G W S +D+ + +GS T+ I A + + IAR +
Sbjct: 101 PTFIQAVG---WSIAMSGRDMVGIAKTGSGKTLAYILPALVHISNQPRIARGD------- 150
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L L ++E A +++ VC + GI+ + GA+ Q + LR E +++TP
Sbjct: 151 GPIALVLAPTRELAQQIKQVCDDFGRRMGIYNTCVFGGASKYPQESDLRRGV-EIVIATP 209
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSIS 356
RL+ + + ++ + LV+D D + IR+ IS
Sbjct: 210 GRLIDFLERETTNLRRCTYLVLDEADRMLDMGFEPQIRKIIS 251
>gi|270292971|ref|ZP_06199182.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
M143]
gi|270278950|gb|EFA24796.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
M143]
Length = 360
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +++ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLIYMSATT 180
>gi|237807827|ref|YP_002892267.1| DEAD/DEAH box helicase [Tolumonas auensis DSM 9187]
gi|237500088|gb|ACQ92681.1| DEAD/DEAH box helicase domain protein [Tolumonas auensis DSM 9187]
Length = 416
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 259 LLFLVSSQEKAAKV-RSVCKPLKAFGIHTVSLHPGAAIDHQITGL-RSCEPEFLVSTPER 316
+L L ++E A +V +S K + G+++V + GA+I+ QI L + C+ LV+TP R
Sbjct: 75 VLVLTPTRELAQQVHQSFVKYSQGLGLNSVVAYGGASINPQIDALNKGCD--VLVATPGR 132
Query: 317 LLKLVSLKAIDVSGVSLLVVDRLDSL 342
LL+L + ID+S V LV+D D +
Sbjct: 133 LLELAFKELIDLSTVETLVLDEADRM 158
>gi|184155910|ref|YP_001844250.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
gi|260662837|ref|ZP_05863731.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
gi|183227254|dbj|BAG27770.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
gi|260552918|gb|EEX25917.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
Length = 442
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 252 FSFTGPFL-----------LFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQI 299
+FT P L L L SQE A + V + A G+ S GA + Q
Sbjct: 49 LAFTWPLLPKVMKGQGTQILVLEPSQELALQTTRVMREWAALLGLKVHSATGGANLRRQT 108
Query: 300 TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLI 351
L+ PE +V TP R+L L+ + + ++ ++ LV+D D L + DT +++
Sbjct: 109 ERLKKERPEVVVGTPGRILHLLDTRDLKLNNLATLVIDEADDLLRDDTQAVV 160
>gi|417794319|ref|ZP_12441577.1| type III restriction enzyme, res subunit [Streptococcus oralis
SK255]
gi|334270163|gb|EGL88570.1| type III restriction enzyme, res subunit [Streptococcus oralis
SK255]
Length = 360
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+LV LK I + V +++D D L + + + P H +++ T
Sbjct: 127 FELVKLKKIKMMNVGTIILDEFDQLLDDSQIHFVEKITHYAPRDHQLIYMSATT 180
>gi|417089715|ref|ZP_11955629.1| DEAD/DEAH box helicase domain protein [Streptococcus suis R61]
gi|353533844|gb|EHC03483.1| DEAD/DEAH box helicase domain protein [Streptococcus suis R61]
Length = 360
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK + G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWSETIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
+L+ LK I + ++ +V+D D L + + I+ P H +++
Sbjct: 127 FELIKLKKIKMMNINTIVLDEFDQLFSDSQYQFVEKIINYVPRDHQLIY 175
>gi|193678797|ref|XP_001952274.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
[Acyrthosiphon pisum]
Length = 621
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
GP +L L ++E ++ S K GI +S++ GA+ Q LR E +++TP
Sbjct: 272 GPSILVLAPTRELVLQIESEVKKYSYKGIKAMSIYGGASSGKQKEVLRKGV-EIVIATPG 330
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RL V AID+S V+ L++D D +
Sbjct: 331 RLNDFVGSGAIDLSDVTFLILDEADRM 357
>gi|419781561|ref|ZP_14307380.1| DEAD/DEAH box helicase [Streptococcus oralis SK100]
gi|383184161|gb|EIC76688.1| DEAD/DEAH box helicase [Streptococcus oralis SK100]
Length = 360
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWSEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +++ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLFDDSQIHFVEKITHYAPRDHQLIYMSATT 180
>gi|262282485|ref|ZP_06060253.1| DEAD RNA helicase [Streptococcus sp. 2_1_36FAA]
gi|262261776|gb|EEY80474.1| DEAD RNA helicase [Streptococcus sp. 2_1_36FAA]
Length = 371
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK + G++T G++ QI L+ PE ++ TP R+
Sbjct: 78 LLILAPNTELAGQIFEVCKSWADSLGLNTQLFISGSSQKRQIERLKKG-PEIIIGTPGRI 136
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
+LV LK I + + +V+D D L + + + P H +V+
Sbjct: 137 FELVKLKKIKMMNIDTIVLDEFDQLLSDSQYHFVDKIVRYAPRDHQLVY 185
>gi|308235047|ref|ZP_07665784.1| DEAD/DEAH box helicase [Gardnerella vaginalis ATCC 14018 = JCM
11026]
gi|311114306|ref|YP_003985527.1| exopolyphosphatase [Gardnerella vaginalis ATCC 14019]
gi|310945800|gb|ADP38504.1| exopolyphosphatase [Gardnerella vaginalis ATCC 14019]
Length = 613
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 247 KEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSC 305
K +E + P + L ++E ++ V PL A +G+HTV+++ G QI L+
Sbjct: 244 KNREDSNIPAPHAMILAPTRELVHQIDEVIAPLAAAYGMHTVTIYGGVRYQRQIAPLKQG 303
Query: 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLS 343
+ +V+ P RL L+ A+ + + + V+D D ++
Sbjct: 304 A-QIIVACPGRLEDLLKQGALTLENIEVSVLDEADEMA 340
>gi|419783193|ref|ZP_14308984.1| DEAD/DEAH box helicase [Streptococcus oralis SK610]
gi|383182347|gb|EIC74902.1| DEAD/DEAH box helicase [Streptococcus oralis SK610]
Length = 360
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +++ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLIYMSATT 180
>gi|389578328|ref|ZP_10168355.1| DNA/RNA helicase, superfamily II [Desulfobacter postgatei 2ac9]
gi|389399963|gb|EIM62185.1| DNA/RNA helicase, superfamily II [Desulfobacter postgatei 2ac9]
Length = 412
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
+ +V ++E A +++ V L + ++ ++ G +HQI L + + L++TP R+
Sbjct: 78 IIMVPTRELAVQIQDVFMALCRKTRVNPFAVFGGVEQEHQIQTL-TKGVDILIATPGRMF 136
Query: 319 KLVSLKAIDVSGVSLLVVDRLDS-LSKG--DTLSLIRQSISGKPHTVVFN 365
L+S KAID+ V +L++D D L+KG D + I++ + + T+ F+
Sbjct: 137 DLISQKAIDIRQVKILILDEADQMLAKGFFDDIQCIKRLLKQRHQTLFFS 186
>gi|415713497|ref|ZP_11465201.1| ATP-dependent RNA helicase [Gardnerella vaginalis 55152]
gi|388055756|gb|EIK78643.1| ATP-dependent RNA helicase [Gardnerella vaginalis 55152]
Length = 618
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 247 KEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSC 305
K +E + P + L ++E ++ V PL A +G+HTV+++ G QI L+
Sbjct: 249 KNREDSNIPAPHAMILAPTRELVHQIDEVIAPLAAAYGMHTVTIYGGVRYQRQIAPLKQG 308
Query: 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLS 343
+ +V+ P RL L+ A+ + + + V+D D ++
Sbjct: 309 A-QIIVACPGRLEDLLKQGALTLENIEVSVLDEADEMA 345
>gi|415702584|ref|ZP_11458730.1| ATP-dependent RNA helicase [Gardnerella vaginalis 284V]
gi|388053130|gb|EIK76121.1| ATP-dependent RNA helicase [Gardnerella vaginalis 284V]
Length = 613
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 247 KEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSC 305
K +E + P + L ++E ++ V PL A +G+HTV+++ G QI L+
Sbjct: 244 KNREDSNIPAPHAMILAPTRELVHQIDEVIAPLAAAYGMHTVTIYGGVRYQRQIAPLKQG 303
Query: 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLS 343
+ +V+ P RL L+ A+ + + + V+D D ++
Sbjct: 304 A-QIIVACPGRLEDLLKQGALTLENIEVSVLDEADEMA 340
>gi|330817466|ref|YP_004361171.1| DEAD/DEAH box helicase [Burkholderia gladioli BSR3]
gi|327369859|gb|AEA61215.1| DEAD/DEAH box helicase-like protein [Burkholderia gladioli BSR3]
Length = 524
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 18/190 (9%)
Query: 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQIT 300
R+++ P LL L ++E A +V + +G H TVS+ G A Q+
Sbjct: 122 RRQRRPQPVARPGLLVLTPTRELAMQVTTAAS---TYGKHLRRLRTVSILGGVAYGQQLM 178
Query: 301 GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP- 359
L + PE LV+TP RLL + ID+S + +LV+D D + + I ++ P
Sbjct: 179 -LLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIETIVAATPA 237
Query: 360 --HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417
T++F+ L + ++ + LL R+ + Q + +++ I Q+V+ + K
Sbjct: 238 SRQTMLFSATLD-GKIGSLTSRLLKDPERIEIVQKMEART-NIAQTVHYVDDRDHK---- 291
Query: 418 IQVLDHAYGD 427
++LDH D
Sbjct: 292 DRLLDHLLRD 301
>gi|227530293|ref|ZP_03960342.1| ATP-dependent RNA helicase [Lactobacillus vaginalis ATCC 49540]
gi|227349770|gb|EEJ40061.1| ATP-dependent RNA helicase [Lactobacillus vaginalis ATCC 49540]
Length = 434
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G LL L SQE A + V + G+ ++L GA + Q+ LR P+ +V TP
Sbjct: 60 GTQLLVLAPSQELAIQTTRVMREWANIIGVKVLALTGGANLRRQVMKLRK-HPDVVVGTP 118
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLI 351
R+L ++ + + + + +V+D D L + DTL+++
Sbjct: 119 GRVLHMLDNRHLKLGHLQTMVIDEADDLLRDDTLAVV 155
>gi|169832492|ref|YP_001694897.1| DEAD RNA helicase [Streptococcus pneumoniae Hungary19A-6]
gi|419493612|ref|ZP_14033337.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47210]
gi|421290053|ref|ZP_15740803.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA54354]
gi|421305374|ref|ZP_15756029.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA62331]
gi|168994994|gb|ACA35606.1| DEAD RNA helicase [Streptococcus pneumoniae Hungary19A-6]
gi|379592185|gb|EHZ57001.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47210]
gi|395887738|gb|EJG98752.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA54354]
gi|395904884|gb|EJH15794.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA62331]
Length = 360
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +++ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLIYMSATT 180
>gi|315612938|ref|ZP_07887849.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis ATCC 49296]
gi|315315048|gb|EFU63089.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis ATCC 49296]
Length = 360
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLSAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +++ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLIYMSATT 180
>gi|227513927|ref|ZP_03943976.1| ATP-dependent RNA helicase [Lactobacillus fermentum ATCC 14931]
gi|227087734|gb|EEI23046.1| ATP-dependent RNA helicase [Lactobacillus fermentum ATCC 14931]
Length = 440
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 252 FSFTGPFL-----------LFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQI 299
+FT P L L L SQE A + V + A G+ S GA + Q
Sbjct: 49 LAFTWPLLPKVMKGQGTQILVLEPSQELALQTTRVMREWAALLGLKVHSATGGANLRRQT 108
Query: 300 TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLI 351
L+ PE +V TP R+L L+ + + ++ ++ LV+D D L + DT +++
Sbjct: 109 ERLKKERPEVVVGTPGRILHLLDTRDLKLNNLATLVIDEADDLLRDDTQAVV 160
>gi|386381807|ref|ZP_10067505.1| DEAD/DEAH box helicase [Streptomyces tsukubaensis NRRL18488]
gi|385670731|gb|EIF93776.1| DEAD/DEAH box helicase [Streptomyces tsukubaensis NRRL18488]
Length = 472
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 11/147 (7%)
Query: 216 SAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
+ +D+L +GS T+ A+ +A A + R+ + P L LV ++E A +V
Sbjct: 76 AGRDVLGRARTGSGKTL---AFGLALLARTAGRRAEP----KRPLALVLVPTRELAQQVS 128
Query: 274 SVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332
V P +A G+ +V++ G AI+ Q LR+ E +V+TP RL LV+ + + V
Sbjct: 129 EVLAPYAEALGLRSVTVVGGLAINRQAAALRAGA-EVVVATPGRLADLVARRDCHLDRVR 187
Query: 333 LLVVDRLDSLSKGDTLSLIRQSISGKP 359
+ V+D D + L + Q++ P
Sbjct: 188 IAVLDEADQMCDMGFLPQVSQTLDQVP 214
>gi|269217166|ref|ZP_06161020.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
700122]
gi|269129303|gb|EEZ60388.1| putative ATP-dependent RNA helicase RhlE [Slackia exigua ATCC
700122]
Length = 721
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIH-TVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP ++ + ++E A ++ C P+ H TV L G QI LR+ + +++TP
Sbjct: 94 GPLMVIVTPTRELAQQIADTCAPIARRTNHSTVVLLGGVGYGPQIKKLRAGA-DIIIATP 152
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RLL L+ A D+ V LV+D D +
Sbjct: 153 GRLLDLMRQGAADLGNVEKLVLDEADRM 180
>gi|168492552|ref|ZP_02716695.1| dead rna helicase [Streptococcus pneumoniae CDC0288-04]
gi|183573308|gb|EDT93836.1| dead rna helicase [Streptococcus pneumoniae CDC0288-04]
Length = 360
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIELLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|392954107|ref|ZP_10319659.1| DEAD/DEAH box helicase domain protein [Hydrocarboniphaga effusa
AP103]
gi|391858006|gb|EIT68536.1| DEAD/DEAH box helicase domain protein [Hydrocarboniphaga effusa
AP103]
Length = 605
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH----TVSLHPGAAIDHQITGLRSCEPEFLVS 312
P L L ++E AA+V + ++ +G H T + G +I+ QI LR + LV+
Sbjct: 78 PLALVLTPTRELAAQV---AQSVRTYGGHLPLKTTVIFGGVSINPQIDVLRHGV-DILVA 133
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
TP RLL V + ID+S V +L++D D +
Sbjct: 134 TPGRLLDHVGQRTIDLSAVEMLILDEADRM 163
>gi|415716273|ref|ZP_11466300.1| ATP-dependent RNA helicase [Gardnerella vaginalis 1400E]
gi|388057535|gb|EIK80364.1| ATP-dependent RNA helicase [Gardnerella vaginalis 1400E]
Length = 617
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 247 KEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSC 305
K +E + P + L ++E ++ V PL A +G+HTV+++ G QI L+
Sbjct: 249 KNREDSNIPAPHAMILAPTRELVHQIDEVIAPLAAAYGMHTVTIYGGVRYQRQIAPLKQG 308
Query: 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLS 343
+ +V+ P RL L+ A+ + + + V+D D ++
Sbjct: 309 A-QIIVACPGRLEDLLKQGALTLENIEVSVLDEADEMA 345
>gi|373118602|ref|ZP_09532727.1| hypothetical protein HMPREF0995_03563 [Lachnospiraceae bacterium
7_1_58FAA]
gi|371666701|gb|EHO31840.1| hypothetical protein HMPREF0995_03563 [Lachnospiraceae bacterium
7_1_58FAA]
Length = 394
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L L ++E A +++ + L F G+ TV L+ GA ID QI L+ +P+ +V+TP RL
Sbjct: 84 LVLAPTRELAVQIQEELRDLCEFKEGVRTVCLYGGAPIDRQINTLKK-KPQIVVATPGRL 142
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSL 342
+ + + + + V +V+D D +
Sbjct: 143 MDHMKRRTVRLDKVQTVVLDEADRM 167
>gi|415705659|ref|ZP_11460930.1| ATP-dependent RNA helicase [Gardnerella vaginalis 75712]
gi|388052381|gb|EIK75405.1| ATP-dependent RNA helicase [Gardnerella vaginalis 75712]
Length = 618
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 247 KEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSC 305
K +E + P + L ++E ++ V PL A +G+HTV+++ G QI L+
Sbjct: 249 KNREDSNIPAPHAMILAPTRELVHQIDEVIAPLAAAYGMHTVTIYGGVRYQRQIAPLKQG 308
Query: 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLS 343
+ +V+ P RL L+ A+ + + + V+D D ++
Sbjct: 309 A-QIIVACPGRLEDLLKQGALTLENIEVSVLDEADEMA 345
>gi|386586651|ref|YP_006083053.1| DEAD/DEAH box helicase [Streptococcus suis D12]
gi|353738797|gb|AER19805.1| DEAD/DEAH box helicase domain protein [Streptococcus suis D12]
Length = 526
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 28/138 (20%)
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293
A I+A + + ++E F F +EK KVRSV + G+
Sbjct: 72 ALIIAPTRELAVQSQEELFKF----------GREKGVKVRSV--------------YGGS 107
Query: 294 AIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--DTLSL 350
+I+ QI LRS +V TP RLL L+ KA+ + GV L++D D L+ G D +
Sbjct: 108 SIEKQIKALRSGA-HIVVGTPGRLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIET 166
Query: 351 IRQSISGKPHTVVFNDCL 368
I + + T++F+ +
Sbjct: 167 IIERVPESRQTLLFSATM 184
>gi|385802044|ref|YP_005838447.1| DEAD/DEAH box helicase [Gardnerella vaginalis HMP9231]
gi|333394041|gb|AEF31959.1| DEAD/DEAH box helicase [Gardnerella vaginalis HMP9231]
Length = 602
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 247 KEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSC 305
K +E + P + L ++E ++ V PL A +G+HTV+++ G QI L+
Sbjct: 244 KNREDSNIPAPHAMILAPTRELVHQIDEVIAPLAAAYGMHTVTIYGGVRYQRQIAPLKQG 303
Query: 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLS 343
+ +V+ P RL L+ A+ + + + V+D D ++
Sbjct: 304 A-QIIVACPGRLEDLLKQGALTLENIEVSVLDEADEMA 340
>gi|293365177|ref|ZP_06611894.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
oralis ATCC 35037]
gi|307703714|ref|ZP_07640655.1| DEAD/DEAH box helicase family protein [Streptococcus oralis ATCC
35037]
gi|291316627|gb|EFE57063.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
oralis ATCC 35037]
gi|307622549|gb|EFO01545.1| DEAD/DEAH box helicase family protein [Streptococcus oralis ATCC
35037]
Length = 360
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +++ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLIYMSATT 180
>gi|414158268|ref|ZP_11414562.1| hypothetical protein HMPREF9188_00836 [Streptococcus sp. F0441]
gi|410870813|gb|EKS18770.1| hypothetical protein HMPREF9188_00836 [Streptococcus sp. F0441]
Length = 360
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKAWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +++ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLIYMSATT 180
>gi|417915165|ref|ZP_12558786.1| DEAD/DEAH box helicase [Streptococcus mitis bv. 2 str. SK95]
gi|342835279|gb|EGU69530.1| DEAD/DEAH box helicase [Streptococcus mitis bv. 2 str. SK95]
Length = 360
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +++ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLIYMSATT 180
>gi|392555440|ref|ZP_10302577.1| DEAD/DEAH box helicase [Pseudoalteromonas undina NCIMB 2128]
Length = 440
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 20/203 (9%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETS--GSSSTIVQIAWIVATAADS 243
+E + H G+ Q P + + + + DI S GS T+ A+++
Sbjct: 12 LETQLAHQGITQ--PTDIQAHAVP---TALAGHDIFAQSKTGSGKTL---AFLLPAVQRV 63
Query: 244 IARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGL 302
+ +K S P +L + ++E A +V + + L A I V + G + QI L
Sbjct: 64 MKQK---ALSKRDPRVLIVAPTRELATQVFTQLRLLIAGTNIKAVKILGGENFNDQIKAL 120
Query: 303 RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGK- 358
R+ +P F+V+TP RL + +++ +SG+ LL+ D D L D L LI + +
Sbjct: 121 RN-DPHFVVATPGRLADHLKQRSLQLSGLELLIFDEADRILDLGFTDQLKLINELADHRL 179
Query: 359 PHTVVFNDCLTYTSVPAV-QNLL 380
T++F+ L + V A+ +NLL
Sbjct: 180 RQTLLFSATLDHAQVDALSRNLL 202
>gi|289167766|ref|YP_003446035.1| ATP-dependent RNA helicase [Streptococcus mitis B6]
gi|288907333|emb|CBJ22170.1| ATP-dependent RNA helicase [Streptococcus mitis B6]
Length = 360
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWSEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|89093208|ref|ZP_01166158.1| ATP-dependent RNA helicase [Neptuniibacter caesariensis]
gi|89082504|gb|EAR61726.1| ATP-dependent RNA helicase [Neptuniibacter caesariensis]
Length = 497
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 88/210 (41%), Gaps = 17/210 (8%)
Query: 175 PSKFLILCLNAIENAMR-HDGVEQDNPLFVNSWGIEFWKCYS----------SAKDILET 223
PSKF++ E MR HD D+ L S ++F C + KDI+
Sbjct: 42 PSKFVV---PEQEGKMRFHDFNLPDDVLHAIS-DLKFEYCTGIQAETIPAALAGKDII-G 96
Query: 224 SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF- 282
+ T A+++ D I +E P L + ++E A ++ K L +
Sbjct: 97 KAQTGTGKTAAFLLGIITDLIDYPLEEKPRLGEPRALVVAPTRELALQIAEDAKGLAKYT 156
Query: 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
+H VSL G + Q L+ + LV+TP RL+ V+ K +D+ V +LV+D D +
Sbjct: 157 DLHVVSLVGGMDYEKQRQKLKKKPVDILVATPGRLIDFVNRKDVDLWNVEVLVLDEADRM 216
Query: 343 SKGDTLSLIRQSISGKPHTVVFNDCLTYTS 372
+ +R + P L Y++
Sbjct: 217 LSMGFIPDVRTIVRNTPRKGADRQTLLYSA 246
>gi|417556272|ref|ZP_12207331.1| DEAD/DEAH box helicase [Gardnerella vaginalis 315-A]
gi|333602767|gb|EGL14192.1| DEAD/DEAH box helicase [Gardnerella vaginalis 315-A]
Length = 602
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 247 KEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSC 305
K +E + P + L ++E ++ V PL A +G+HTV+++ G QI L+
Sbjct: 244 KNREDSNIPAPHAMILAPTRELVHQIDEVIAPLAAAYGMHTVTIYGGVRYQRQIAPLKQG 303
Query: 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLS 343
+ +V+ P RL L+ A+ + + + V+D D ++
Sbjct: 304 A-QIIVACPGRLEDLLKQGALTLENIEVSVLDEADEMA 340
>gi|423327615|ref|ZP_17305423.1| hypothetical protein HMPREF9711_00997 [Myroides odoratimimus CCUG
3837]
gi|404606267|gb|EKB05825.1| hypothetical protein HMPREF9711_00997 [Myroides odoratimimus CCUG
3837]
Length = 370
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 260 LFLVSSQEKAAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L LV ++E A +V+ S + TV+L G + Q+ L+ PE +V+TP RLL
Sbjct: 76 LILVPTRELAIQVKDSFLDYSTELALKTVTLFGGVPLPPQVRALKQ-HPEIIVATPGRLL 134
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL 342
L++ K + +S + +LV+D D +
Sbjct: 135 DLINQKIVKLSNLEILVLDEADQM 158
>gi|389720718|ref|ZP_10187537.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. HA]
gi|388609402|gb|EIM38574.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. HA]
Length = 383
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 96/241 (39%), Gaps = 18/241 (7%)
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPG 292
A++V+ D + +E P L L ++E A ++ S L F + V+L G
Sbjct: 56 AFLVSIINDLLNNPVQEQRYRGEPRALILAPTRELALQIESDAHELNKFTDLSVVTLLGG 115
Query: 293 AAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR 352
D Q L + +V+TP RL+ V K + + + LV+D D L + ++
Sbjct: 116 VDFDKQKAQLDKAPVDIMVATPGRLIDFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVK 175
Query: 353 QSISGKP-----HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC 407
+ + P T++F+ +Y + Q L + + + + + + V
Sbjct: 176 RIVRFSPRKEQRQTLMFSATFSYDVLNLAQQWLFEPVT-VEIEPEKKTNADVEQRVYMVA 234
Query: 408 ASDEEKILKGIQVLDHAYGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNC 466
+D+ K+L+ I EP+ KV+ + + + L LK Y + S
Sbjct: 235 KADKYKLLQDI----------LRDEPIEKVMIFANRRDQVRKLYDHLKRDNYKVVMLSGE 284
Query: 467 I 467
I
Sbjct: 285 I 285
>gi|223932903|ref|ZP_03624899.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
gi|330833198|ref|YP_004402023.1| DEAD/DEAH box helicase domain-containing protein [Streptococcus
suis ST3]
gi|386584595|ref|YP_006080998.1| DEAD/DEAH box helicase [Streptococcus suis D9]
gi|223898484|gb|EEF64849.1| DEAD/DEAH box helicase domain protein [Streptococcus suis 89/1591]
gi|329307421|gb|AEB81837.1| DEAD/DEAH box helicase domain protein [Streptococcus suis ST3]
gi|353736741|gb|AER17750.1| DEAD/DEAH box helicase domain protein [Streptococcus suis D9]
Length = 526
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 28/138 (20%)
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293
A I+A + + ++E F F +EK KVRSV + G+
Sbjct: 72 ALIIAPTRELAVQSQEELFKF----------GREKGVKVRSV--------------YGGS 107
Query: 294 AIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--DTLSL 350
+I+ QI LRS +V TP RLL L+ KA+ + GV L++D D L+ G D +
Sbjct: 108 SIEKQIKALRSGA-HIVVGTPGRLLDLIKRKALKLDGVETLILDEADEMLNMGFLDDIEA 166
Query: 351 IRQSISGKPHTVVFNDCL 368
I + + T++F+ +
Sbjct: 167 IIERVPESRQTLLFSATM 184
>gi|431758422|ref|ZP_19547049.1| DEAD/DEAH box helicase [Enterococcus faecium E3083]
gi|430617480|gb|ELB54353.1| DEAD/DEAH box helicase [Enterococcus faecium E3083]
Length = 425
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L+ SSQE A +V V + K + SL GA + QI GL+ +PE L+ TP R+
Sbjct: 71 LVIFASSQELAIQVADVAREWGKDKELKVQSLVGGANVKRQIEGLKK-KPEILIGTPGRI 129
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377
L+L+ K I V +V D D L +I Q + P L + S A +
Sbjct: 130 LELMKAKKIKAHQVKTMVFDEADQLFDVGNSQIIDQILHQAPTEY----QLAFFSATADR 185
Query: 378 NLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQ 419
+L +S+ + ++++V A D+ + KG++
Sbjct: 186 SL-----------ESIEKITGKTFETIDVTAEDDSR--KGLR 214
>gi|359439170|ref|ZP_09229149.1| probable DEAD-box ATP-dependent RNA helicase SH0956
[Pseudoalteromonas sp. BSi20311]
gi|359445450|ref|ZP_09235186.1| probable DEAD-box ATP-dependent RNA helicase SH0956
[Pseudoalteromonas sp. BSi20439]
gi|358026206|dbj|GAA65398.1| probable DEAD-box ATP-dependent RNA helicase SH0956
[Pseudoalteromonas sp. BSi20311]
gi|358040727|dbj|GAA71435.1| probable DEAD-box ATP-dependent RNA helicase SH0956
[Pseudoalteromonas sp. BSi20439]
Length = 440
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 20/203 (9%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETS--GSSSTIVQIAWIVATAADS 243
+E + H G+ Q P + + + + DI S GS T+ A+++
Sbjct: 12 LETQLAHQGITQ--PTDIQAHAVP---TALAGHDIFAQSKTGSGKTL---AFLLPAVQRV 63
Query: 244 IARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGL 302
+ +K S P +L + ++E A +V + + L A I V + G + QI L
Sbjct: 64 MKQK---ALSKRDPRVLIVAPTRELATQVFTQLRLLIAGTNIKAVKILGGENFNDQIKAL 120
Query: 303 RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGK- 358
R+ +P F+V+TP RL + +++ +SG+ LL+ D D L D L LI + +
Sbjct: 121 RN-DPHFVVATPGRLADHLKQRSLQLSGLELLIFDEADRILDLGFTDQLKLINELADHRL 179
Query: 359 PHTVVFNDCLTYTSVPAV-QNLL 380
T++F+ L + V A+ +NLL
Sbjct: 180 RQTLLFSATLDHAQVDALSRNLL 202
>gi|423134919|ref|ZP_17122565.1| hypothetical protein HMPREF9715_02340 [Myroides odoratimimus CIP
101113]
gi|371644248|gb|EHO09787.1| hypothetical protein HMPREF9715_02340 [Myroides odoratimimus CIP
101113]
Length = 370
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 260 LFLVSSQEKAAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L LV ++E A +V+ S + TV+L G + Q+ L+ PE +V+TP RLL
Sbjct: 76 LILVPTRELAIQVKDSFLDYSTELALKTVTLFGGVPLPPQVRALKQ-HPEIIVATPGRLL 134
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL 342
L++ K + +S + +LV+D D +
Sbjct: 135 DLINQKIVKLSNLEILVLDEADQM 158
>gi|306825460|ref|ZP_07458800.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus sp.
oral taxon 071 str. 73H25AP]
gi|304432398|gb|EFM35374.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus sp.
oral taxon 071 str. 73H25AP]
Length = 360
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +++ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLIYMSATT 180
>gi|419446516|ref|ZP_13986521.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7879-04]
gi|379614056|gb|EHZ78766.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7879-04]
Length = 410
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|315126555|ref|YP_004068558.1| DEAD/DEAH box helicase [Pseudoalteromonas sp. SM9913]
gi|315015069|gb|ADT68407.1| ATP-dependent RNA helicase, DEAD box [Pseudoalteromonas sp. SM9913]
Length = 440
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 20/203 (9%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETS--GSSSTIVQIAWIVATAADS 243
+E + H G+ Q P + + + + DI S GS T+ A+++
Sbjct: 12 LETQLAHQGITQ--PTDIQAHAVP---TALAGHDIFAQSKTGSGKTL---AFLLPAVQRV 63
Query: 244 IARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGL 302
+ +K S P +L + ++E A +V + + L A I V + G + QI L
Sbjct: 64 MKQK---ALSKRDPRVLIVAPTRELATQVFTQLRLLIAGTNIKAVKILGGENFNDQIKAL 120
Query: 303 RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGK- 358
R+ +P F+V+TP RL + +++ +SG+ LL+ D D L D L LI + +
Sbjct: 121 RN-DPHFVVATPGRLADHLKQRSLQLSGLELLIFDEADRILDLGFTDQLKLINELADHRL 179
Query: 359 PHTVVFNDCLTYTSVPAV-QNLL 380
T++F+ L + V A+ +NLL
Sbjct: 180 RQTLLFSATLDHAQVDALSRNLL 202
>gi|387902585|ref|YP_006332924.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
gi|387577477|gb|AFJ86193.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
Length = 516
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 18/190 (9%)
Query: 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQIT 300
R+ + P LL L ++E A +V + +G H TVS+ G A Q+
Sbjct: 119 RRARRPQPVARPSLLVLTPTRELAMQVTTAAT---TYGKHLRRLRTVSILGGVAYGQQLM 175
Query: 301 GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP- 359
L + PE LV+TP RLL + ID+S + +LV+D D + + I ++ P
Sbjct: 176 -LLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIETIVAATPA 234
Query: 360 --HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417
T++F+ L + ++ + LL + R+ + + S+ A I Q+V+ + K
Sbjct: 235 SRQTMLFSATLD-GKIGSLTSRLLNNPERIEIVAKIESR-ANIAQTVHYVDDRDHK---- 288
Query: 418 IQVLDHAYGD 427
++LDH D
Sbjct: 289 DRLLDHLLRD 298
>gi|401683532|ref|ZP_10815418.1| DEAD/DEAH box helicase [Streptococcus sp. BS35b]
gi|418975012|ref|ZP_13522921.1| DEAD/DEAH box helicase [Streptococcus oralis SK1074]
gi|383348383|gb|EID26342.1| DEAD/DEAH box helicase [Streptococcus oralis SK1074]
gi|400187610|gb|EJO21804.1| DEAD/DEAH box helicase [Streptococcus sp. BS35b]
Length = 360
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +++ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLIYMSATT 180
>gi|134296056|ref|YP_001119791.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134139213|gb|ABO54956.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
Length = 516
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 18/190 (9%)
Query: 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQIT 300
R+ + P LL L ++E A +V + +G H TVS+ G A Q+
Sbjct: 119 RRARRPQPVARPSLLVLTPTRELAMQVTTAAT---TYGKHLRRLRTVSILGGVAYGQQLM 175
Query: 301 GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP- 359
L + PE LV+TP RLL + ID+S + +LV+D D + + I ++ P
Sbjct: 176 -LLAKNPEILVATPGRLLDHLERGRIDLSELKMLVLDEADRMLDMGFIDDIETIVAATPA 234
Query: 360 --HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417
T++F+ L + ++ + LL + R+ + + S+ A I Q+V+ + K
Sbjct: 235 SRQTMLFSATLD-GKIGSLTSRLLNNPERIEIVAKIESR-ANIAQTVHYVDDRDHK---- 288
Query: 418 IQVLDHAYGD 427
++LDH D
Sbjct: 289 DRLLDHLLRD 298
>gi|449542335|gb|EMD33314.1| hypothetical protein CERSUDRAFT_117934 [Ceriporiopsis subvermispora
B]
Length = 514
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 18/210 (8%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFG----IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
GP L L ++E A +++ C FG I +++ GA QI L+ E ++
Sbjct: 169 GPIALILAPTRELAVQIQQECT---KFGSNSRIRNTAIYGGAPKGPQIRDLQRGV-EIVI 224
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KP--HTVVFNDCL 368
+TP RL+ ++ + ++ ++ LV+D D + IR+ +S +P T++F+
Sbjct: 225 ATPGRLIDMLETQKTNLRRITYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLMFSATW 284
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
V + N L ++++ + + I Q V VC SD EK K I+ L +
Sbjct: 285 P-KDVQKLANDFLKDFIQVNIGSMELTANHNIQQIVEVC-SDFEKRAKLIKHL-----EQ 337
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
+E KVL VG ++ L+ G+
Sbjct: 338 ISAENAKVLIFVGTKRVADDITKYLRQDGW 367
>gi|322374535|ref|ZP_08049049.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
C300]
gi|321280035|gb|EFX57074.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus sp.
C300]
Length = 360
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +++ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLIYMSATT 180
>gi|403070967|ref|ZP_10912299.1| ATP-dependent RNA helicase [Oceanobacillus sp. Ndiop]
Length = 492
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L + ++E A +V L F G+ +S++ G+ +D QI L+ P+ +V+TP RLL
Sbjct: 74 LVVAPTRELAIQVAEELNRLAKFTGMRALSIYGGSPMDRQIRALKDG-PQIVVATPGRLL 132
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+ K I + V V+D D + + IR + G P T++F+ +
Sbjct: 133 DHMRRKTIRIDAVQTAVLDEADEMLNMGFIDDIRDILKGIPAERQTLLFSATM 185
>gi|350532821|ref|ZP_08911762.1| ATP-dependent RNA helicase [Vibrio rotiferianus DAT722]
Length = 447
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 105/239 (43%), Gaps = 25/239 (10%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYS----------SAKDILETS--GSSSTIVQI 233
+EN ++ + DN L N +F K + KD+L +S GS T+
Sbjct: 1 MENTLQFKDLGLDNRLLKNLKHYDFKKATDIQKQAIPVAIAGKDLLASSKTGSGKTL--- 57
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293
A+++ S+ K FS P + L ++E A +V + + A + +L G
Sbjct: 58 AFVLPMLHKSLKTK---SFSAKDPRAVILAPTRELAKQVYGELRSMLAGLTYDAALILGG 114
Query: 294 A-IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR 352
+ Q+ LR P+F+V+TP RL + +++ + G+ L++D D + +R
Sbjct: 115 ENFNDQVKALRRY-PKFIVATPGRLADHLEHRSLYLDGLETLILDEADRMLDLGFAPELR 173
Query: 353 QSISGKPH----TVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC 407
+ + H T++F+ L + V + + +L + R+++ S + I Q +C
Sbjct: 174 RIHNAAKHRRRQTLMFSATLDHAEVNGIASEMLNAPKRIAVGVS-NEEHKDITQKFYLC 231
>gi|417935333|ref|ZP_12578652.1| type III restriction enzyme, res subunit [Streptococcus mitis bv. 2
str. F0392]
gi|340769826|gb|EGR92344.1| type III restriction enzyme, res subunit [Streptococcus mitis bv. 2
str. F0392]
Length = 360
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +++ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLIYMSATT 180
>gi|444376140|ref|ZP_21175388.1| ATP-dependent RNA helicase [Enterovibrio sp. AK16]
gi|443679696|gb|ELT86348.1| ATP-dependent RNA helicase [Enterovibrio sp. AK16]
Length = 412
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 97/201 (48%), Gaps = 36/201 (17%)
Query: 260 LFLVSSQEKAAKV-RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L LV ++E AA+V +++ + GI T L G A ++Q+ L + +P+ +V+TP RLL
Sbjct: 72 LVLVPTRELAAQVIKAIDEIATPMGIKTEMLCGGVAPENQLKEL-ADKPQLIVATPGRLL 130
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQN 378
+ + + + + L +D D L + +++ IS ++PA +
Sbjct: 131 DFIDKEEVSLHALKLWALDEADRLLEMGFWPDVQRLIS---------------ALPAKRQ 175
Query: 379 LLLGSINRLSLNQSVASQSACII-QSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVL 437
LL S ++ Q++ S +A ++ + V + A + +++ I+ + L
Sbjct: 176 TLLFSA---TMPQALESAAASMLFKPVRIEAHQKNSVVEEIE---------------ERL 217
Query: 438 YIVGKDSKFQNLVSTLKCKGY 458
Y+V K SK Q L+S +K G+
Sbjct: 218 YLVNKGSKAQALISLIKQHGW 238
>gi|406576377|ref|ZP_11052006.1| ATP-dependent RNA helicase [Streptococcus sp. GMD6S]
gi|404461384|gb|EKA07315.1| ATP-dependent RNA helicase [Streptococcus sp. GMD6S]
Length = 360
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWSEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +++ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLIYMSATT 180
>gi|339477993|ref|YP_004706813.1| putative primosomal protein N' [Candidatus Moranella endobia PCIT]
gi|338172544|gb|AEI74945.1| putative primosomal protein N' [Candidatus Moranella endobia PCIT]
Length = 595
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 254 FTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEFLV 311
P +L L ++E A +V S C G+ V+L+ G D Q+ LR P+ +V
Sbjct: 72 LAAPQVLVLAPTRELAIQVGSACADFAKHMKGVSIVALYGGQRYDVQLRALRQG-PQVVV 130
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
TP RLL + +D+S +S LV+D D +
Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVIDEADEM 161
>gi|365843650|ref|ZP_09384548.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Flavonifractor plautii ATCC 29863]
gi|364569013|gb|EHM46640.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Flavonifractor plautii ATCC 29863]
Length = 394
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L L ++E A +++ + L F G+ TV L+ GA ID QI L+ +P+ +V+TP RL
Sbjct: 84 LVLAPTRELAVQIQEELRDLCEFKEGVRTVCLYGGAPIDRQINTLKK-KPQIVVATPGRL 142
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSL 342
+ + + + + V +V+D D +
Sbjct: 143 MDHMKRRTVRLDKVRTVVLDEADRM 167
>gi|331266607|ref|YP_004326237.1| ATP-dependent RNA helicase, superfamily II DNA and RNA helicases
[Streptococcus oralis Uo5]
gi|326683279|emb|CBZ00897.1| ATP-dependent RNA helicase, superfamily II DNA and RNA helicases
[Streptococcus oralis Uo5]
Length = 360
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWSEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +++ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLIYMSATT 180
>gi|392962181|ref|ZP_10327628.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
gi|421055965|ref|ZP_15518892.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|421068803|ref|ZP_15530040.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
gi|421073056|ref|ZP_15534160.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392438381|gb|EIW16204.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans B4]
gi|392439079|gb|EIW16825.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A12]
gi|392445483|gb|EIW22815.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans A11]
gi|392452939|gb|EIW29844.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans DSM
17108]
Length = 447
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 16/182 (8%)
Query: 250 EGFSFTGPFL--LFLVSSQEKAAKV-RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCE 306
E + P + L + ++E A ++ R V K GI +S++ G +D QI L+
Sbjct: 63 EKIEISKPIVQALIITPTRELALQITREVAKLADQLGIQVLSVYGGQDVDRQIKKLKGG- 121
Query: 307 PEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG---DTLSLIRQSISGKPHTV 362
+ ++ TP RL+ + I + V+ LV+D D L G D L+RQ+ S K T+
Sbjct: 122 AQIVIGTPGRLMDHLRRGTIQLENVTKLVLDEADQMLHMGFLEDVEELVRQT-SNKRQTM 180
Query: 363 VFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACI--IQSVNVCASDEEKILKGIQV 420
+F+ ++P+ L R L+ + +++ + I+ + V + EKI+K +
Sbjct: 181 LFS-----ATMPSKIRGLADRYMRKPLDIRIQTKNITLDEIKQIMVEVPESEKIVKLSSM 235
Query: 421 LD 422
+D
Sbjct: 236 ID 237
>gi|373455480|ref|ZP_09547312.1| hypothetical protein HMPREF9453_01481 [Dialister succinatiphilus
YIT 11850]
gi|371934839|gb|EHO62616.1| hypothetical protein HMPREF9453_01481 [Dialister succinatiphilus
YIT 11850]
Length = 504
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDH 297
TAA I E+ S GP + L ++E A + L + IH + ++ G I+
Sbjct: 54 TAAFGIPILERIDTSKPGPQAVVLSPTRELAIQSAEEINHLAQYLPIHALPIYGGQDIER 113
Query: 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG 357
Q LR P +V+TP RL+ + ID+S V +LV+D D + + IR ++G
Sbjct: 114 QFKALRK-HPNIIVATPGRLMDHMKRGTIDLSHVQVLVLDEGDEMVDMGFIDDIRTILAG 172
Query: 358 KP---HTVVFNDCL 368
P T+ F+ +
Sbjct: 173 IPEERQTMFFSATM 186
>gi|329119861|ref|ZP_08248535.1| ATP-dependent RNA helicase RhlE [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464017|gb|EGF10328.1| ATP-dependent RNA helicase RhlE [Neisseria bacilliformis ATCC
BAA-1200]
Length = 444
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 18/158 (11%)
Query: 217 AKDILET--SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR- 273
+DI+ + +GS T A+++ T R EK G GP L L ++E AA+V
Sbjct: 40 GRDIMASAQTGSGKTA---AFLLPTLQRLTRRSEKPG---KGPRALVLTPTRELAAQVEK 93
Query: 274 ---SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSG 330
+ K +K F TVS+ GA+ +Q L S + +V+TP RL+ L+ +D +
Sbjct: 94 NALTYAKNMKWF--RTVSIVGGASFGYQTRAL-SKPVDLIVATPGRLMDLMDSGKVDFAR 150
Query: 331 VSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFN 365
+ +L++D D + + I ++ P T++F+
Sbjct: 151 LEVLILDEADRMLDMGFIEDIETIVAATPEDRQTLLFS 188
>gi|339449298|ref|ZP_08652854.1| superfamily II DNA/RNA helicase [Lactobacillus fructivorans KCTC
3543]
Length = 422
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 221 LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK 280
L +GS T+ A+ + A+S+ +G ++ + +QE A +V +V +
Sbjct: 38 LSPTGSGKTV---AFTMPILANSMPG--------SGTQVIVIEPTQELAMQVANVIRDWA 86
Query: 281 -AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339
AF + + L GA + Q L+ PE +V TP R+L L++ + + VS V +VVD
Sbjct: 87 VAFKVKILPLIGGANVKRQQEQLKK-HPEIVVGTPGRILSLINERKLKVSEVDTVVVDEA 145
Query: 340 DSLSKGDTLSLIRQSISGKP 359
D L +L ++ ++ P
Sbjct: 146 DDLLNDTSLDQVKNIVASVP 165
>gi|431751294|ref|ZP_19539985.1| DEAD/DEAH box helicase [Enterococcus faecium E2620]
gi|430615734|gb|ELB52677.1| DEAD/DEAH box helicase [Enterococcus faecium E2620]
Length = 425
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 19/162 (11%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L+ SSQE A +V V + K + SL GA + QI GL+ +PE L+ TP R+
Sbjct: 71 LVIFASSQELAIQVADVAREWGKDKELKVQSLVGGANVKRQIEGLKK-KPEILIGTPGRI 129
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377
L+L+ K I V + D D L +I Q + P L + S A +
Sbjct: 130 LELMKAKKIKAHQVKTMAFDEADQLFDAGNSQIIDQILHQAPTEY----QLAFFSATADR 185
Query: 378 NLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQ 419
+L +S+ + ++++V A D+ + KG++
Sbjct: 186 SL-----------ESIEKITGKTFETIDVTAEDDSR--KGLR 214
>gi|34495838|ref|NP_900053.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
gi|34101693|gb|AAQ58061.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
Length = 472
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 257 PFLLFLVSSQEKAAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E AA+V SV K + ++ + G I+ QI LR+ + LV+TP
Sbjct: 77 PRALVLTPTRELAAQVEESVRTYSKYLPLKSLVMFGGVNINPQIKALRAPV-DILVATPG 135
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RLL V K +D+SGV +LV+D D +
Sbjct: 136 RLLDHVGQKTVDLSGVEILVLDEADRM 162
>gi|384251941|gb|EIE25418.1| DEAD-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 589
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 11/203 (5%)
Query: 211 WKCYSSAKDI--LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268
W S D+ + +GS T+ A+ + +A+K + GP +L L ++E
Sbjct: 202 WPIIQSGSDLVGIAATGSGKTL---AFGLPGLKHILAQKAAGVSTGKGPSMLVLAPTREL 258
Query: 269 AAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
A ++ +V + ++ G+ T+ + G Q LR + +V+TP RL L++ A
Sbjct: 259 AQQIAAVLEEAGQSAGLRTLCAYGGVPKPPQTAALRQGV-DVVVATPGRLEDLINDGACR 317
Query: 328 VSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNL---LLGSI 384
+SGV+ LV+D D + IR +I+G + T PA+Q L SI
Sbjct: 318 LSGVTYLVLDEADRMLDLGFEPHIR-AIAGATRADRQTLMFSATWPPAIQKLASEFQASI 376
Query: 385 NRLSLNQSVASQSACIIQSVNVC 407
R+++ S S + Q V V
Sbjct: 377 ARVTIGSQDLSASHSVRQIVEVI 399
>gi|421075784|ref|ZP_15536790.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans JBW45]
gi|392526099|gb|EIW49219.1| DEAD/DEAH box helicase domain protein [Pelosinus fermentans JBW45]
Length = 447
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 87/183 (47%), Gaps = 16/183 (8%)
Query: 250 EGFSFTGPFL--LFLVSSQEKAAKV-RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCE 306
E + P + L + ++E A ++ R V K GI +S++ G +D QI L+
Sbjct: 63 EKIEISKPIVQALIITPTRELALQITREVAKLADQLGIQVLSVYGGQDVDRQIKKLKGG- 121
Query: 307 PEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG---DTLSLIRQSISGKPHTV 362
+ ++ TP RL+ + + I + V+ LV+D D L G D L+RQ+ S K T+
Sbjct: 122 AQIVIGTPGRLMDHLRRETIQLENVTKLVLDEADQMLHMGFLEDVEELVRQT-SNKRQTM 180
Query: 363 VFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACI--IQSVNVCASDEEKILKGIQV 420
+F+ ++P+ L R L+ + +++ + I+ + V + EKI K +
Sbjct: 181 LFS-----ATMPSKIRGLADRYMRKPLDIRIQTKNITLDEIKQIMVEVPESEKIAKLSSM 235
Query: 421 LDH 423
+D
Sbjct: 236 IDE 238
>gi|303390338|ref|XP_003073400.1| DEAD box RNA helicase-like protein [Encephalitozoon intestinalis
ATCC 50506]
gi|303302546|gb|ADM12040.1| DEAD box RNA helicase-like protein [Encephalitozoon intestinalis
ATCC 50506]
Length = 493
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 14/223 (6%)
Query: 211 WKCYSSAKDI--LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268
W S +D+ + +GS T+ I + A D + +G P L L ++E
Sbjct: 118 WPMALSGRDMVGIAQTGSGKTLSFILPGLVHAKDQQPLRRGDG-----PIALVLAPTREL 172
Query: 269 AAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
+++ V FG+ + +++ GA+ QI L E +++TP RL+ L
Sbjct: 173 VMQIKKVADEFCGMFGLRSTAVYGGASSQPQIKALHEGV-EIVIATPGRLIDLHEQGHAP 231
Query: 328 VSGVSLLVVDRLDSLSKGDTLSLIRQSI---SGKPHTVVFNDCLTYTSVPAVQNLLLGSI 384
+S V+ LV+D D + +R+ I +G T++++ ++ + I
Sbjct: 232 LSRVTFLVLDEADRMLDMGFEPQLRKIIPKTNGNRQTLMWSATWPREVRGLAESYMNDYI 291
Query: 385 NRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ N+ + + S I Q + VC S EK K + VLD GD
Sbjct: 292 QVVVGNEELKTNSK-IKQVIEVC-SGREKEDKLLGVLDKFKGD 332
>gi|255072011|ref|XP_002499680.1| predicted protein [Micromonas sp. RCC299]
gi|226514942|gb|ACO60938.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 442
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 23/228 (10%)
Query: 209 EFWKCYSSAKDILETS--GSSSTIVQIAWIVATAA-DSIARKEKEGFSFTGPFLLFLVSS 265
E W +D+L + GS T+ + V A D+ K+ P L + +
Sbjct: 27 ECWPPACVGRDVLGIAPPGSGKTLAYLLPAVEFAMRDARDNPRKKRDPPGRPSALVIAPT 86
Query: 266 QEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPE----FLVSTPERLLKL 320
+E ++ SVC LK A + V+++ GA+ Q L +P +V TP RLL +
Sbjct: 87 RELTQQIASVCNKLKRAAPVRCVAVYGGASQSEQEDEL--AQPTSMATLVVGTPGRLLAV 144
Query: 321 VSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLTYTSVPA 375
+ A+ + LLV+ DR+ +L + L IR+++ +P T++F+ V A
Sbjct: 145 MGTGALGLERARLLVLDEADRMLALGFAEQLEQIREALP-RPGRQTLMFSATFP-KGVRA 202
Query: 376 VQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDH 423
V L + ++ VA+ + Q+V+VCA + KG ++L H
Sbjct: 203 VAKAWLAP--KPAIGDGVAAGDLNVDQTVHVCAEHK----KGRKLLKH 244
>gi|88858193|ref|ZP_01132835.1| ATP-dependent RNA helicase, DEAD box family protein
[Pseudoalteromonas tunicata D2]
gi|88819810|gb|EAR29623.1| ATP-dependent RNA helicase, DEAD box family protein
[Pseudoalteromonas tunicata D2]
Length = 416
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 260 LFLVSSQEKAAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
LFLV ++E A +V S+ K K + T+S+ G I Q+ + + +V+TP RL+
Sbjct: 80 LFLVPTRELAVQVEESIAKYGKGLNLRTISVFGGVRIPSQVNRFKRGA-DIVVATPRRLV 138
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPH 360
L+ +KA + V V+D D L ++ +R ++ P
Sbjct: 139 DLLKVKAFSLEQVKHFVMDEADRLVSMGIVAELRTILAAMPQ 180
>gi|403417986|emb|CCM04686.1| predicted protein [Fibroporia radiculosa]
Length = 755
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 117/284 (41%), Gaps = 34/284 (11%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDI--LETSGSSSTI--VQIAWIVATAA 241
I + +R G P+ +W + S +D+ + +GS TI A + A
Sbjct: 338 IMSTIRAQGFPAPTPIQCQAWPMAL-----SGRDVVAIAQTGSGKTISFALPAMLHINAQ 392
Query: 242 DSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFG----IHTVSLHPGAAIDH 297
+A S GP L L ++E A +++ C FG I +++ GA
Sbjct: 393 PLLA-------SGDGPIALILAPTRELAVQIQQECT---KFGSNSKIRNTAIYGGAPKGP 442
Query: 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ---S 354
QI L+ E +++TP RL+ ++ + ++ V+ LV+D D + IR+
Sbjct: 443 QIRDLQRGV-EIVIATPGRLIDMLETQKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVGQ 501
Query: 355 ISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKI 414
I T++F+ V + N L ++++ + + I Q V VC SD EK
Sbjct: 502 IRPDRQTLMFSATWP-KDVQKLANDFLKDFIQVNIGSMELTANHNIAQIVEVC-SDFEKR 559
Query: 415 LKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
K I+ L D E KVL VG ++ L+ G+
Sbjct: 560 SKLIKHL-----DQISQENAKVLIFVGTKRVADDITKYLRQDGW 598
>gi|358464694|ref|ZP_09174655.1| DEAD/DEAH box helicase [Streptococcus sp. oral taxon 058 str.
F0407]
gi|357066661|gb|EHI76803.1| DEAD/DEAH box helicase [Streptococcus sp. oral taxon 058 str.
F0407]
Length = 360
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +++ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLIYMSATT 180
>gi|77360375|ref|YP_339950.1| DEAD/DEAH box helicase [Pseudoalteromonas haloplanktis TAC125]
gi|76875286|emb|CAI86507.1| ATP-dependent RNA helicase, DEAD box family [Pseudoalteromonas
haloplanktis TAC125]
Length = 440
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 20/231 (8%)
Query: 184 NAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETS--GSSSTIVQIAWIVATAA 241
N +E + H G+ Q P + + + + DI S GS T+ A+++
Sbjct: 10 NRLETQLAHQGITQ--PTDIQAHAVP---TALAGHDIFAQSKTGSGKTL---AFLLPAVQ 61
Query: 242 DSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQIT 300
+ +K S P +L + ++E A +V + + L A I V + G + QI
Sbjct: 62 RVMKQK---ALSKRDPRVLIVAPTRELATQVFTQLRLLIAGTNIKAVKILGGENFNDQIK 118
Query: 301 GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISG 357
LR+ +P+F+V+TP RL ++ + + +SG+ LL+ D D L + L +I
Sbjct: 119 ALRN-DPQFVVATPGRLADHLTKRTLQLSGLELLIFDEADRILDLGFTEQLKMINDLADH 177
Query: 358 K-PHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC 407
+ T++F+ L + V A+ LL ++ L+ + Q + I QS+ +
Sbjct: 178 RLRQTLLFSATLDHAQVDALSRNLLKKPKQIMLS-AANEQHSDIKQSLYLA 227
>gi|354557827|ref|ZP_08977084.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353549501|gb|EHC18942.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 497
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
+ L ++E A +V + F GI T+ ++ G ID QI L+ P+ +V+TP RL+
Sbjct: 74 IVLSPTRELAVQVAEELNKIGQFKGIQTLPIYGGQEIDRQIRALKK-RPQIIVATPGRLM 132
Query: 319 KLVSLKAIDVSGVSLLVVDRLDS-LSKG--DTLSLIRQSISGKPHTVVFNDCLTYTSVPA 375
+ K I +S + ++V+D D L+ G + + I Q + T++F+ + +
Sbjct: 133 DHMRRKTIRLSEIKIVVLDEADEMLNMGFVEDIHTILQEVPENRQTLLFSATMPRS---- 188
Query: 376 VQNL 379
+QNL
Sbjct: 189 IQNL 192
>gi|302334881|ref|YP_003800088.1| DEAD/DEAH box helicase [Olsenella uli DSM 7084]
gi|301318721|gb|ADK67208.1| DEAD/DEAH box helicase domain protein [Olsenella uli DSM 7084]
Length = 554
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS 304
RK K GPF L + ++E AA++ V + + G V + GA + QI GL S
Sbjct: 196 RKPKANAHPFGPFALIVTPTRELAAQIEGVVTTVCEQTGQRAVVVMGGAKFERQIRGLES 255
Query: 305 -CEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
C+ LV+TP RL+ L+ + + V +LV+D D +
Sbjct: 256 GCD--LLVATPGRLIDLMEHGHVSLKDVHVLVLDEADRM 292
>gi|86148322|ref|ZP_01066616.1| putative ATP-dependent RNA helicase [Vibrio sp. MED222]
gi|85833877|gb|EAQ52041.1| putative ATP-dependent RNA helicase [Vibrio sp. MED222]
Length = 428
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 13/115 (11%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A + V +K++ +H TV + G +++ Q+ LR + LV+T
Sbjct: 89 LILVPTRELA---KQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGT-DILVAT 144
Query: 314 PERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFN 365
P RLL L+S AI + V LV+ DR+ SL + L I + + K T++F+
Sbjct: 145 PGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFS 199
>gi|297568967|ref|YP_003690311.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
AHT2]
gi|296924882|gb|ADH85692.1| DEAD/DEAH box helicase domain protein [Desulfurivibrio alkaliphilus
AHT2]
Length = 442
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH----TVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
L L ++E AA+V + + +G H T + G +I QIT LR + LV+TP
Sbjct: 77 LVLTPTRELAAQVEAS---FRLYGKHLPLRTTVVFGGVSIRPQITTLRQGV-DILVATPG 132
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
RLL VS K ID+S V +LV+D D + L IR+ ++ P
Sbjct: 133 RLLDHVSQKTIDLSKVEMLVLDEADRMLDMGFLRDIRKILALLP 176
>gi|350571452|ref|ZP_08939778.1| ATP-dependent RNA helicase RhlE [Neisseria wadsworthii 9715]
gi|349792116|gb|EGZ45981.1| ATP-dependent RNA helicase RhlE [Neisseria wadsworthii 9715]
Length = 441
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 23/189 (12%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILE--TSGSSSTIVQIAWIVATAADS 243
I +A++ +G E P+ + +DI+ +GS T A+++ T
Sbjct: 14 ILSALKTEGYETPTPIQAQALPAAL-----EGRDIMAGAQTGSGKTA---AFLLPTLQRL 65
Query: 244 IARKEKEGFSFTGPFLLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQI 299
R EK G GP L L ++E AA+V ++ K +K F TV++ G++ QI
Sbjct: 66 TKRSEKSG---KGPRALVLAPTRELAAQVEKNAQAYAKNMKWF--RTVTIVGGSSFGQQI 120
Query: 300 TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
L S + +V+TP RL+ L+ +D + +L++D D + + I ++ P
Sbjct: 121 RAL-SKPVDLVVATPGRLMDLMDSGKVDFDRLEVLILDEADRMLDMGFIDDIETIVAATP 179
Query: 360 ---HTVVFN 365
T++F+
Sbjct: 180 ESRQTLLFS 188
>gi|84392274|ref|ZP_00991701.1| putative ATP-dependent RNA helicase [Vibrio splendidus 12B01]
gi|84376394|gb|EAP93274.1| putative ATP-dependent RNA helicase [Vibrio splendidus 12B01]
Length = 428
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 13/115 (11%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A + V +K++ +H TV + G +++ Q+ LR + LV+T
Sbjct: 89 LILVPTRELA---KQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGT-DILVAT 144
Query: 314 PERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFN 365
P RLL L+S AI + V LV+ DR+ SL + L I + + K T++F+
Sbjct: 145 PGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFS 199
>gi|409048419|gb|EKM57897.1| hypothetical protein PHACADRAFT_251816 [Phanerochaete carnosa
HHB-10118-sp]
Length = 506
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 18/210 (8%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFG----IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
GP L L ++E A +++ C FG I +++ GA QI L+ E ++
Sbjct: 159 GPIALILAPTRELAVQIQQECT---KFGSNSRIRNTAIYGGAPKGPQIRDLQRGV-EIVI 214
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KP--HTVVFNDCL 368
+TP RL+ ++ ++ ++ LV+D D + IR+ +S +P T++F+
Sbjct: 215 ATPGRLIDMLESGKTNLRRITYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLMFSATW 274
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
V + N L ++++ + + + I Q + VC SD EK K I+ L D
Sbjct: 275 P-KDVQKLANDFLKDFIQVNIGSTELTANHNIQQIIEVC-SDFEKRSKLIKHL-----DQ 327
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
E KVL VG ++ L+ G+
Sbjct: 328 ISQENAKVLIFVGTKRVADDITKYLRQDGW 357
>gi|373109512|ref|ZP_09523790.1| hypothetical protein HMPREF9712_01383 [Myroides odoratimimus CCUG
10230]
gi|423131172|ref|ZP_17118847.1| hypothetical protein HMPREF9714_02247 [Myroides odoratimimus CCUG
12901]
gi|371642665|gb|EHO08224.1| hypothetical protein HMPREF9714_02247 [Myroides odoratimimus CCUG
12901]
gi|371644748|gb|EHO10278.1| hypothetical protein HMPREF9712_01383 [Myroides odoratimimus CCUG
10230]
Length = 370
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 12/89 (13%)
Query: 260 LFLVSSQEKAAKVR------SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A +V+ S PLK TV+L G + Q+ L+ PE +V+T
Sbjct: 76 LILVPTRELAIQVKDSFLDYSTELPLK-----TVTLFGGVPLPPQVRALKQ-HPEIIVAT 129
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
P RLL L++ K + +S + +LV+D D +
Sbjct: 130 PGRLLDLINQKIVKLSNLEILVLDEADQM 158
>gi|254508401|ref|ZP_05120522.1| ATP-dependent rna helicase, dead box family [Vibrio
parahaemolyticus 16]
gi|219548714|gb|EED25718.1| ATP-dependent rna helicase, dead box family [Vibrio
parahaemolyticus 16]
Length = 417
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 76/155 (49%), Gaps = 14/155 (9%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A++V +K++ H TV++ G +++ Q+ LR + +V+T
Sbjct: 87 LILVPTRELASQV---AYNVKSYSYHLRDKVKTVAVFGGVSVNPQMLSLRGGS-DIIVAT 142
Query: 314 PERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTY 370
P RLL LVS AI + V LV+ DR+ SL D L+ I + K T++F+
Sbjct: 143 PGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTDELNKILALLPEKKQTLLFSATFPE 202
Query: 371 TSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVN 405
Q+LL + + L + AS + SVN
Sbjct: 203 KVTTLAQHLLSDPVE-VQLQSAEASTLVQRVFSVN 236
>gi|218676540|ref|YP_002395359.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
gi|218324808|emb|CAV26511.1| putative ATP-dependent RNA helicase [Vibrio splendidus LGP32]
Length = 468
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 13/115 (11%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A + V +K++ +H TV + G +++ Q+ LR + LV+T
Sbjct: 129 LILVPTRELA---KQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGT-DILVAT 184
Query: 314 PERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFN 365
P RLL L+S AI + V LV+ DR+ SL + L I + + K T++F+
Sbjct: 185 PGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFS 239
>gi|119899811|ref|YP_935024.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
gi|119672224|emb|CAL96138.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
Length = 537
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 257 PFLLFLVSSQEKAAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E AA+V SV K + ++ + G I+ QI+ L+ + LV+TP
Sbjct: 80 PRCLILTPTRELAAQVEESVQTYGKHLALTSMVMFGGVNINPQISALKK-RVDILVATPG 138
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RLL V K +D+SGV +LV+D D +
Sbjct: 139 RLLDHVGQKTLDLSGVEILVLDEADRM 165
>gi|409996877|ref|YP_006751278.1| ATP-dependent RNA helicase yfmL [Lactobacillus casei W56]
gi|406357889|emb|CCK22159.1| Putative ATP-dependent RNA helicase yfmL [Lactobacillus casei W56]
Length = 459
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L SQE A + R V P K GI + A + Q+ L+ +PE +V+T RL
Sbjct: 97 LLILAPSQELAIQTRDVLTPYAKDIGITVQGVIGSANVKRQLDRLKE-KPEVIVATAGRL 155
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ 353
L+L+ + + + G+ LVVD D + + +R+
Sbjct: 156 LELIQSRKLKLDGLQTLVVDEADEMLRDPGFDQVRE 191
>gi|366086312|ref|ZP_09452797.1| ATP-dependent RNA helicase [Lactobacillus zeae KCTC 3804]
Length = 434
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 2/102 (1%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L SQE A + R V P + ++ + A + Q+T L+ +PE +V+T RL
Sbjct: 66 LLILAPSQELAIQTRDVLTPYAQDIHVNVQGIIGSANVKRQLTRLKE-KPEVIVATAGRL 124
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
L+L+ + ++G+ LVVD D + + + +R+ + P
Sbjct: 125 LELIQSHKLKLAGLQTLVVDEADEMLRDPGFAQVREIAAAAP 166
>gi|359446168|ref|ZP_09235866.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20439]
gi|358039971|dbj|GAA72115.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20439]
Length = 433
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKA---FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E A +V K A I TV++ G +++ Q+ LR + +V+TP R
Sbjct: 89 LILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQALRGGA-DIIVATPGR 147
Query: 317 LLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSV 373
LL L+S AI + V LV+ DR+ SL + L+ + + K T++F+
Sbjct: 148 LLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELAELLALMPAKKQTMLFSATFPEQVK 207
Query: 374 PAVQNLL 380
Q LL
Sbjct: 208 QLTQELL 214
>gi|306829284|ref|ZP_07462474.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
mitis ATCC 6249]
gi|304428370|gb|EFM31460.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
mitis ATCC 6249]
Length = 360
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +++ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDHSQIHFVEKITHYAPRDHQLIYMSATT 180
>gi|377820473|ref|YP_004976844.1| DEAD/DEAH box helicase [Burkholderia sp. YI23]
gi|357935308|gb|AET88867.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
YI23]
Length = 546
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 130 PKLLVLTPTRELAMQVSTAAT---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 185
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RL+ + ID+S +++LV+D D + + I + P T++F+ +
Sbjct: 186 ATPGRLIDHLERGRIDLSELNMLVLDEADRMLDMGFIEDIETIVDATPASRQTLLFSATI 245
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDH 423
+ + ++ LL R+ + Q + ++S I Q+V+ + K ++LDH
Sbjct: 246 D-SKITSLTGRLLKDPERIEIVQRLEAKS-NIAQTVHYVDDRDHK----DRLLDH 294
>gi|114320766|ref|YP_742449.1| DEAD/DEAH box helicase domain-containing protein [Alkalilimnicola
ehrlichii MLHE-1]
gi|114227160|gb|ABI56959.1| DEAD/DEAH box helicase domain protein [Alkalilimnicola ehrlichii
MLHE-1]
Length = 427
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 15/119 (12%)
Query: 260 LFLVSSQEKAAKVRSVCK------PLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVST 313
L L ++E AA+VR K PLK T + G ++ QI LR + +V+T
Sbjct: 78 LILTPTRELAAQVRDSVKTYGGKLPLK-----TAVIFGGVGMNPQIQTLRRGV-DIVVAT 131
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCLT 369
P RLL + +D+SGV +LV+D D + + IR+ I+ P T++F+ +
Sbjct: 132 PGRLLDHMGQGTVDLSGVEMLVLDEADRMLDMGFIRDIRRVIAAVPKQRQTLMFSATFS 190
>gi|413962917|ref|ZP_11402144.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
gi|413928749|gb|EKS68037.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
Length = 548
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 131 PKLLVLTPTRELAMQVSTAAT---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 186
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RL+ + ID+S +++LV+D D + + I + P T++F+ +
Sbjct: 187 ATPGRLIDHLERGRIDLSELNMLVLDEADRMLDMGFIEDIETIVDATPASRQTLLFSATI 246
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDH 423
+ + ++ LL R+ + Q + ++S I Q+V+ + K ++LDH
Sbjct: 247 D-SKITSLTGRLLKDPERIEIVQKLEAKS-NIAQTVHYVDDRDHK----DRLLDH 295
>gi|302922639|ref|XP_003053509.1| hypothetical protein NECHADRAFT_74731 [Nectria haematococca mpVI
77-13-4]
gi|256734450|gb|EEU47796.1| hypothetical protein NECHADRAFT_74731 [Nectria haematococca mpVI
77-13-4]
Length = 1201
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LK G+ +V + GA I QI L+ E +V TP
Sbjct: 676 GPIGLIMTPTRELAVQIHRDCKPFLKMMGLRSVCAYGGAPIREQIAELKRGA-EIIVCTP 734
Query: 315 ERLLKLVSL---KAIDVSGVSLLVVDRLDSL 342
R++ L++ + ++ V+ +V+D D +
Sbjct: 735 GRMIDLLAANQGRVTNLKRVTYVVLDEADRM 765
>gi|358009896|ref|ZP_09141706.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. P8-3-8]
Length = 383
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 22/243 (9%)
Query: 234 AWIVATAADSIARKEKEGFSFTG-PFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHP 291
A++V+ D + KE F G P L L ++E A ++ + K L F ++ V+L
Sbjct: 56 AFLVSIINDLLNNPIKEQ-RFRGEPRALILAPTRELAIQIENDAKDLVKFSNLNVVTLVG 114
Query: 292 GAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLI 351
G D Q L + +V+TP RL+ K + + + LV+D D L + +
Sbjct: 115 GVDFDKQKKQLNQNFVDIIVATPGRLIDFTEQKEVWLDQIEFLVIDEADRLLDMGFIPSV 174
Query: 352 RQSISGKP-----HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNV 406
++ + P T++F+ +Y + Q L + + +A + Q V V
Sbjct: 175 KRIVRFSPRKEQRQTLMFSATFSYDVLNLAQQWLFEPVT--VEIEPEKKTNADVEQRVYV 232
Query: 407 CA-SDEEKILKGIQVLDHAYGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGS 464
D+ K+L+ I EP+ KV+ + + + L LK GY + S
Sbjct: 233 VEKKDKYKLLRQI----------LADEPIEKVMIFANRRDQVRKLYDHLKADGYKVVMLS 282
Query: 465 NCI 467
I
Sbjct: 283 GEI 285
>gi|407939753|ref|YP_006855394.1| DEAD/DEAH box helicase [Acidovorax sp. KKS102]
gi|407897547|gb|AFU46756.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
KKS102]
Length = 405
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 24/171 (14%)
Query: 260 LFLVSSQEKAAKVRSVCK--------PLK---AFGIHTVSLHPGAAIDHQITGLRSCEPE 308
L LV ++E AA+V V + PLK FG G +I+ Q+ GLR +
Sbjct: 56 LVLVPTRELAAQVGEVLRSLAQHLQQPLKIAIVFG--------GVSINPQMLGLRGGA-D 106
Query: 309 FLVSTPERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFN 365
+V+TP RLL LV A+ +S V+ LV+ DRL L + L + + + + F+
Sbjct: 107 IVVATPGRLLDLVDHNALRLSAVAHLVLDEADRLLDLGFAEELQRVLALLPARRQNLFFS 166
Query: 366 DCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILK 416
+V A+ + LL + R+ + ++ ++ A +++ V S ++L+
Sbjct: 167 ATFP-AAVQALADGLLQNPVRVEVPHTLGNEPAIEQRAIAVDGSRRTQLLR 216
>gi|90409933|ref|ZP_01217950.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
gi|90329286|gb|EAS45543.1| putative ATP-dependent RNA helicase [Photobacterium profundum 3TCK]
Length = 462
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A + V +K++ +H TV++ G + + Q+ LR + LV+T
Sbjct: 123 LILVPTRELA---KQVADSIKSYAVHFNGAIKTVAVFGGVSANTQMLALRGGT-DILVAT 178
Query: 314 PERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTY 370
P RLL L+S AI + V LV+ DR+ SL D LS + + T++F+
Sbjct: 179 PGRLLDLISSNAIKLDRVKTLVLDEADRMLSLGFTDELSALLDLLPKNKQTLLFSATFPE 238
Query: 371 TSVPAVQNLL 380
Q LL
Sbjct: 239 QVQALTQELL 248
>gi|334131082|ref|ZP_08504848.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
gi|333443712|gb|EGK71673.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
Length = 535
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH----TVSLHPGAAIDHQITGLRSCEPEFLVS 312
P +L L ++E AA+V ++ +G H ++ + G ++ Q+ L+ + LV+
Sbjct: 79 PRVLVLTPTRELAAQVEES---VRTYGRHAKMRSMVMFGGVGMNPQLQALKQRV-DILVA 134
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTS 372
TP RLL V K++D+SGV + V+D D + + IR+ I+ P L Y++
Sbjct: 135 TPGRLLDHVGEKSLDLSGVEIFVLDEADRMLDMGFIRDIRKVIAVLPK---VRQTLLYSA 191
Query: 373 V--PAVQNLLLGSIN 385
P ++ L G +N
Sbjct: 192 TFSPEIRELAHGLLN 206
>gi|350564527|ref|ZP_08933344.1| DEAD/DEAH box helicase domain protein [Thioalkalimicrobium
aerophilum AL3]
gi|349777546|gb|EGZ31909.1| DEAD/DEAH box helicase domain protein [Thioalkalimicrobium
aerophilum AL3]
Length = 413
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 250 EGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPE 308
+G+S P L L ++E A ++R V K L + + +V++ G A D Q L + +
Sbjct: 68 QGYS-PNPRALLLAPTRELALQIRQVVKSLSRHLDLRSVAITGGLAQDKQ-RALLTQPYQ 125
Query: 309 FLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
L++TP RLL LV ID+S + L+++D D +
Sbjct: 126 ILIATPGRLLNLVEQDEIDLSELELVMIDEADRM 159
>gi|449305030|gb|EMD01037.1| hypothetical protein BAUCODRAFT_82013 [Baudoinia compniacensis UAMH
10762]
Length = 853
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 253 SFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLV 311
+ GP L + ++E A ++ CKP KA + V + GA I QI L+ E LV
Sbjct: 273 NLEGPIALIMAPTRELATQIHHECKPYTKALNLRAVCAYGGAPIKDQIADLKRGA-EILV 331
Query: 312 STPERLLKLV---SLKAIDVSGVSLLVVDRLDSL 342
TP RL+ L+ S + ++ V+ +V+D D +
Sbjct: 332 CTPGRLIDLLTANSGRVTNLKRVTYVVLDEADRM 365
>gi|413955931|gb|AFW88580.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea
mays]
Length = 768
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 114/254 (44%), Gaps = 24/254 (9%)
Query: 216 SAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
S +DI+ +GS T + ++ D +++EG P + ++E A ++
Sbjct: 255 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEG-----PIGVICAPTRELAHQIY 309
Query: 274 SVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVSTPERLLKLVSLKAIDVSGV 331
K K + + +++ G + Q L++ CE +++TP RL+ L+ +KA+ +
Sbjct: 310 LEAKKFAKPYNLRVAAVYGGVSKFDQFKELKAGCE--VVIATPGRLIDLLKMKALKMFRA 367
Query: 332 SLLVVDRLDSL----SKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRL 387
+ LV+D D + + S++ Q G+ T++F+ + Y + +L I R+
Sbjct: 368 TYLVLDEADRMFDLGFEPQIRSIVGQIRPGR-QTLLFSATMPYKVERLAREILTDPI-RV 425
Query: 388 SLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQ 447
++ Q V + I Q VNV SD EK+ ++ L D VL K ++
Sbjct: 426 TVGQ-VGGANEDIKQVVNVIPSDAEKMPWLLEKLPGMIDDG------DVLVFASKKARVD 478
Query: 448 NLVSTLKCKGYSIS 461
+ L +G+ I+
Sbjct: 479 EIERELNQRGFRIA 492
>gi|47217854|emb|CAG02347.1| unnamed protein product [Tetraodon nigroviridis]
Length = 391
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 260 LFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
+ LV S+E A +V R++C P FG T +L G + H R +P+ LV+TP
Sbjct: 64 VVLVPSRELAEQVAAVSRTLCAP---FGFLTRTLGGGRGVGHIKGVFRRNQPDVLVATPG 120
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSL 342
L+K + + +D+S ++ VVD D++
Sbjct: 121 ALVKALRRRCLDLSRLNFFVVDEADTM 147
>gi|319640918|ref|ZP_07995627.1| ATP-independent RNA helicase [Bacteroides sp. 3_1_40A]
gi|317387437|gb|EFV68307.1| ATP-independent RNA helicase [Bacteroides sp. 3_1_40A]
Length = 439
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 26/164 (15%)
Query: 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDI--LETSGSSSTIVQIAWIVATA 240
+N IEN + + +E+ NP+ I WK KD+ L +GS T+ + +V +
Sbjct: 1 MNMIENILANLKIERLNPM--QEASINAWK---EGKDLILLSPTGSGKTLAYLLPLVQSL 55
Query: 241 ADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK----PLKAFGIHTVSLHPGAAID 296
I TG + LV S+E A ++ V K P KA VS + G
Sbjct: 56 KPGI----------TGVQAIVLVPSRELALQIDQVFKSMNTPFKA-----VSCYGGRPAM 100
Query: 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340
+ ++ +P ++ TP R+ +S + D V+ LV+D D
Sbjct: 101 EEHRTIKGVQPSVIIGTPGRMNDHLSKQNFDADTVTTLVIDEFD 144
>gi|162382798|ref|YP_454063.2| ATP-dependent RNA helicase DeaD [Sodalis glossinidius str.
'morsitans']
Length = 622
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 254 FTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEFLV 311
P +L L ++E A +V C G++ V+L+ G D Q+ LR P+ +V
Sbjct: 72 LAAPQVLVLAPTRELAVQVGEACADFAKHMKGVNVVALYGGQRYDVQLRALRQG-PQVVV 130
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
TP RLL + +D+S +S LV+D D +
Sbjct: 131 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEM 161
>gi|87121447|ref|ZP_01077336.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
sp. MED121]
gi|86163290|gb|EAQ64566.1| ATP-dependent RNA helicase, DEAD box family protein [Marinomonas
sp. MED121]
Length = 418
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 259 LLFLVSSQEKAAKV-RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
+L L ++E A +V +S C +A + +V + GA+I+ QI +R + LV+TP RL
Sbjct: 80 VLVLTPTRELAQQVYKSFCDYGQALPLRSVVAYGGASINPQIDEIRQGV-DVLVATPGRL 138
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSL 342
L+LV +DVS + LV+D D +
Sbjct: 139 LELVMKDLVDVSQLKTLVLDEADRM 163
>gi|392593094|gb|EIW82420.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 715
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 96/214 (44%), Gaps = 22/214 (10%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP + + ++E A ++ CKP L+ + V + G+ I QI L+ E +V TP
Sbjct: 198 GPLAIVMTPTRELAVQIHRECKPFLRVMNLRAVCAYGGSPIKDQIAELKKGA-EIIVCTP 256
Query: 315 ERLLKLV---SLKAIDVSGVSLLVVDRLDSL----SKGDTLSLIRQSISGKPHTVVFNDC 367
R++ L+ S + ++ V+ +V+D D + + + +I +I TV+F+
Sbjct: 257 GRMIDLLTANSGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKII-NNIRPDRQTVLFS-- 313
Query: 368 LTYTSVPAVQNLLLGSINRLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHAY 425
+ P + L I L +V +S A I+ + ++ K + +++L
Sbjct: 314 ---ATFPKQMDSLARKILHKPLEITVGGRSVVAAEIEQIVEVRPEDSKFNRLLEIL---- 366
Query: 426 GDHFHSEP-LKVLYIVGKDSKFQNLVSTLKCKGY 458
G ++ +P + L V + NL+ L KGY
Sbjct: 367 GQMYNEDPECRTLIFVDRQEGADNLLRDLMRKGY 400
>gi|392535017|ref|ZP_10282154.1| ATP-dependent RNA helicase [Pseudoalteromonas arctica A 37-1-2]
Length = 435
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKA---FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E A +V K A I TV++ G +++ Q+ LR + +V+TP R
Sbjct: 89 LILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQALRGGA-DIIVATPGR 147
Query: 317 LLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSV 373
LL L+S AI + V+ LV+ DR+ SL + L+ + + T++F+
Sbjct: 148 LLDLISSNAIKLDKVTTLVLDEADRMLSLGFTEELAELLALMPANKQTMLFSATFPEQVT 207
Query: 374 PAVQNLL 380
Q LL
Sbjct: 208 QLTQELL 214
>gi|191638017|ref|YP_001987183.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
gi|385819770|ref|YP_005856157.1| Superfamily II DNA and RNA helicase [Lactobacillus casei LC2W]
gi|385822912|ref|YP_005859254.1| Superfamily II DNA and RNA helicase [Lactobacillus casei BD-II]
gi|190712319|emb|CAQ66325.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
gi|327382097|gb|AEA53573.1| Superfamily II DNA and RNA helicase [Lactobacillus casei LC2W]
gi|327385239|gb|AEA56713.1| Superfamily II DNA and RNA helicase [Lactobacillus casei BD-II]
Length = 428
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L SQE A + R V P K GI + A + Q+ L+ +PE +V+T RL
Sbjct: 66 LLILAPSQELAIQTRDVLTPYAKDIGITVQGVIGSANVKRQLDRLKE-KPEVIVATAGRL 124
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ 353
L+L+ + + + G+ LVVD D + + +R+
Sbjct: 125 LELIQSRKLKLDGLQTLVVDEADEMLRDPGFDQVRE 160
>gi|146077818|ref|XP_001463349.1| putative ATP-dependent DEAD/H RNA helicase [Leishmania infantum
JPCM5]
gi|398010753|ref|XP_003858573.1| ATP-dependent DEAD/H RNA helicase, putative [Leishmania donovani]
gi|134067434|emb|CAM65707.1| putative ATP-dependent DEAD/H RNA helicase [Leishmania infantum
JPCM5]
gi|322496782|emb|CBZ31852.1| ATP-dependent DEAD/H RNA helicase, putative [Leishmania donovani]
Length = 685
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 17/150 (11%)
Query: 200 PLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGP 257
P V S G+ S +D+L T +GS T+ ++ AD R EK GP
Sbjct: 70 PFAVQSLGV---PALMSGRDLLLTAKTGSGKTLCYALPLIRHCADQ-PRCEKG----EGP 121
Query: 258 FLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVSTPE 315
L LV +QE A +V ++ L +A G+ V+ + ++ I ++ CE +V+TP
Sbjct: 122 IGLVLVPTQELAMQVFTLLDELGEAAGLRCVASYGSTSLSDNIRHAKAGCE--LMVATPG 179
Query: 316 RLLKLVSL---KAIDVSGVSLLVVDRLDSL 342
RLL L+++ K + +S VS ++VD D L
Sbjct: 180 RLLDLLTVNGGKTLSLSRVSFVIVDEADRL 209
>gi|294777226|ref|ZP_06742682.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
gi|294448940|gb|EFG17484.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
Length = 439
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 72/164 (43%), Gaps = 26/164 (15%)
Query: 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDI--LETSGSSSTIVQIAWIVATA 240
+N IEN + + +E+ NP+ I WK KD+ L +GS T+ + +V +
Sbjct: 1 MNMIENILANLKIERLNPM--QEASINAWK---EGKDLILLSPTGSGKTLAYLLPLVQSL 55
Query: 241 ADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK----PLKAFGIHTVSLHPGAAID 296
I TG + LV S+E A ++ V K P KA VS + G
Sbjct: 56 KPGI----------TGVQAIVLVPSRELALQIDQVFKSMNTPFKA-----VSCYGGRPAM 100
Query: 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340
+ ++ +P ++ TP R+ +S + D V+ LV+D D
Sbjct: 101 EEHRTIKGMQPSVIIGTPGRMNDHLSKQNFDADTVTTLVIDEFD 144
>gi|377556365|ref|ZP_09786073.1| ATP-dependent RNA helicase [Lactobacillus gastricus PS3]
gi|376168503|gb|EHS87269.1| ATP-dependent RNA helicase [Lactobacillus gastricus PS3]
Length = 460
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLH---PGAAIDHQITGLRSCEPEFLVSTPE 315
++ S+E A ++ K + F H ++H G +HQI L +P+ ++ TP
Sbjct: 74 VVITTPSRELAYQIYQAAKQINQFNPHPFTIHNYVGGTDKEHQIDQLGRKQPQIVIGTPG 133
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLD 340
R+L LV +A+D+ + V+D D
Sbjct: 134 RILDLVKSQALDIHLANQFVIDEAD 158
>gi|226494636|ref|NP_001147596.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Zea mays]
gi|195612416|gb|ACG28038.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Zea mays]
Length = 768
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 114/254 (44%), Gaps = 24/254 (9%)
Query: 216 SAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
S +DI+ +GS T + ++ D +++EG P + ++E A ++
Sbjct: 255 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEG-----PIGVICAPTRELAHQIY 309
Query: 274 SVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVSTPERLLKLVSLKAIDVSGV 331
K K + + +++ G + Q L++ CE +++TP RL+ L+ +KA+ +
Sbjct: 310 LEAKKFAKPYNLRVAAVYGGVSKFDQFKELKAGCE--VVIATPGRLIDLLKMKALKMFRA 367
Query: 332 SLLVVDRLDSL----SKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRL 387
+ LV+D D + + S++ Q G+ T++F+ + Y + +L I R+
Sbjct: 368 TYLVLDEADRMFDLGFEPQIRSIVGQIRPGR-QTLLFSATMPYKVERLAREILTDPI-RV 425
Query: 388 SLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQ 447
++ Q V + I Q VNV SD EK+ ++ L D VL K ++
Sbjct: 426 TVGQ-VGGANEDIKQVVNVIPSDAEKMPWLLEKLPGMIDDG------DVLVFASKKARVD 478
Query: 448 NLVSTLKCKGYSIS 461
+ L +G+ I+
Sbjct: 479 EIERELNQRGFRIA 492
>gi|84778881|dbj|BAE73658.1| inducible ATP-independent RNA helicase [Sodalis glossinidius str.
'morsitans']
Length = 627
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 254 FTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEFLV 311
P +L L ++E A +V C G++ V+L+ G D Q+ LR P+ +V
Sbjct: 77 LAAPQVLVLAPTRELAVQVGEACADFAKHMKGVNVVALYGGQRYDVQLRALRQG-PQVVV 135
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
TP RLL + +D+S +S LV+D D +
Sbjct: 136 GTPGRLLDHLKRGTLDLSNLSGLVLDEADEM 166
>gi|359453960|ref|ZP_09243255.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20495]
gi|358048911|dbj|GAA79504.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20495]
Length = 422
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKA---FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E A +V K A I TV++ G +++ Q+ LR + +V+TP R
Sbjct: 89 LILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQALRGGA-DIIVATPGR 147
Query: 317 LLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSV 373
LL L+S AI + ++ LV+ DR+ SL + L+ + + K T++F+
Sbjct: 148 LLDLISSNAIKLDKLNTLVLDEADRMLSLGFTEELAELLALMPAKKQTMLFSATFPEQVT 207
Query: 374 PAVQNLL 380
Q LL
Sbjct: 208 QLTQELL 214
>gi|391336487|ref|XP_003742611.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like
[Metaseiulus occidentalis]
Length = 662
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 17/163 (10%)
Query: 196 EQDNPLFVNSWGIEFWKCYSSAKDI--LETSGSSSTIVQI--AWI-VATAADSIARKEKE 250
E+ +P+ SW I S +D+ + +G+ T+ + A+I + A +++++
Sbjct: 304 EKPSPIQCQSWPILL-----SGRDMVGIAQTGTGKTLAFLLPAFIHIRGQAPTVSKR--- 355
Query: 251 GFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFL 310
+ GP +L L ++E A ++ + I++ + GA Q++ LR PE +
Sbjct: 356 ---YEGPTVLVLSPTRELAIQIYDESRKYTYRNINSACCYGGACRGDQMSQLRK-NPEIV 411
Query: 311 VSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ 353
++TP RL LV + A+ + VS LV+D D + IRQ
Sbjct: 412 IATPGRLNDLVEMMAVSLRKVSYLVLDEADRMLDMGFEPQIRQ 454
>gi|290474026|ref|YP_003466900.1| ATP-dependent RNA helicase with P-loop hydrolase domain
[Xenorhabdus bovienii SS-2004]
gi|289173333|emb|CBJ80110.1| putative ATP-dependent RNA helicase with P-loop hydrolase domain
[Xenorhabdus bovienii SS-2004]
Length = 459
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 260 LFLVSSQEKAAKV-RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L ++E AA+V +VC K + ++ + G +I+ Q+ LR + LV+TP RLL
Sbjct: 79 LILTPTRELAAQVGENVCNYSKYLRLRSLVVFGGVSINPQMMKLRGGV-DILVATPGRLL 137
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
L A+D+S V +L++D D + + IR+ +S P
Sbjct: 138 DLEHQNAVDLSHVEILILDEADRMLDMGFIHDIRRVLSKLP 178
>gi|346473033|gb|AEO36361.1| hypothetical protein [Amblyomma maculatum]
Length = 523
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 134/322 (41%), Gaps = 33/322 (10%)
Query: 147 NVERAEVHLNGKSCANGHHGQACEKLD-CPSKFLILCLNAIENAMRHDGVEQDNPLFVNS 205
N RAE + + G + LD C F + C E + Q +P+ +
Sbjct: 74 NAFRAEHEITVQGHGQGRVPKPVLTLDEC--NFPVQCRALFER----KNITQPSPIQAQA 127
Query: 206 WGIEFWKCYSSAKDI--LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV 263
W I S +D+ + +GS T+ V +A I+R+++ S GP + L
Sbjct: 128 WPIVM-----SGRDLVGIAQTGSGKTLA----YVLPSAIHISRQQRPSRSGEGPIGVVLA 178
Query: 264 SSQEKAAKVRSVCKPL--KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLV 321
++E ++ V AF + ++ G + QI L+ V+TP RLL ++
Sbjct: 179 PTRELVQQISQVAYEWCEGAFDLTGTPVYGGVSKAPQIERLQRGA-HMCVATPGRLLDIL 237
Query: 322 SLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KP--HTVVFNDCLTYTSVPAVQN 378
A+++ + LV+D D + IR+ I +P TV+++ Q
Sbjct: 238 ETGAVNLLRCTFLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTVMWSATWPNEVRSLAQE 297
Query: 379 LLLGSINRLSLNQSVASQSACIIQSVNVC--ASDEEKILKGIQVLDHAYGDHFHSEPLKV 436
L+ ++++ + + I Q +++C E K+L +Q + A G+ +
Sbjct: 298 FLVPDHMQVTVGSADLCANHNIKQVIHICDEFEKEHKLLNVLQDI-MAEGEQ------RT 350
Query: 437 LYIVGKDSKFQNLVSTLKCKGY 458
L + S+ +L+ TL+ KG+
Sbjct: 351 LIFAARKSRVVHLLQTLQKKGF 372
>gi|431912394|gb|ELK14528.1| Putative ATP-dependent RNA helicase DDX28 [Pteropus alecto]
Length = 549
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 96/232 (41%), Gaps = 26/232 (11%)
Query: 245 ARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLR 303
R + S P L LV S+E A +VR+V +PL + G+ L G + L
Sbjct: 201 GRPSLDSGSIPTPRGLVLVPSRELAEQVRAVAQPLGSSLGVQVRELGGGRGMSRIRLQLS 260
Query: 304 SCEP-EFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTV 362
P + LV+TP L K + + I + +S LV+D D+L L L+ I GK H
Sbjct: 261 KQPPADILVATPGALWKALKRQLISLHQLSFLVLDEADTLLDESFLELV-DYILGKSHIA 319
Query: 363 VFNDCLTYTSVPAVQNLLLGS-----INRL--------SLNQSVASQSACIIQSVN---V 406
D L P Q L+G+ + +L SL +S+ CI+ V +
Sbjct: 320 EGPDDLKDPFNPKAQLALVGATFPEGVGQLLSKVASSDSLTTITSSKLHCIMPHVKQTFM 379
Query: 407 CASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
EK+ + +Q+L D H L +V F N ST+ GY
Sbjct: 380 RLKGAEKVAELVQILKQH--DRAHRTGLSGTVLV-----FCNSSSTVNWLGY 424
>gi|417983154|ref|ZP_12623796.1| ATP-dependent RNA helicase [Lactobacillus casei 21/1]
gi|417995875|ref|ZP_12636162.1| ATP-dependent RNA helicase [Lactobacillus casei M36]
gi|418010506|ref|ZP_12650283.1| ATP-dependent RNA helicase [Lactobacillus casei Lc-10]
gi|418013467|ref|ZP_12653111.1| ATP-dependent RNA helicase [Lactobacillus casei Lpc-37]
gi|410528935|gb|EKQ03773.1| ATP-dependent RNA helicase [Lactobacillus casei 21/1]
gi|410536579|gb|EKQ11172.1| ATP-dependent RNA helicase [Lactobacillus casei M36]
gi|410553995|gb|EKQ27983.1| ATP-dependent RNA helicase [Lactobacillus casei Lc-10]
gi|410555993|gb|EKQ29924.1| ATP-dependent RNA helicase [Lactobacillus casei Lpc-37]
Length = 428
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L SQE A + R V P K GI + A + Q+ L+ +PE +V+T RL
Sbjct: 66 LLILAPSQELAIQTRDVLTPYAKDIGITVQGVIGSANVKRQLDRLKE-KPEVIVATAGRL 124
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ 353
L+L+ + + + G+ LVVD D + + +R+
Sbjct: 125 LELIQSRKLKLDGLQTLVVDEADEMLRDPGFDQVRE 160
>gi|418202710|ref|ZP_12839139.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52306]
gi|419455850|ref|ZP_13995807.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP04]
gi|421285835|ref|ZP_15736611.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA60190]
gi|353867267|gb|EHE47162.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52306]
gi|379627826|gb|EHZ92432.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP04]
gi|395885822|gb|EJG96843.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae GA60190]
Length = 360
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEASGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|196230475|ref|ZP_03129337.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
Ellin428]
gi|196225405|gb|EDY19913.1| DEAD/DEAH box helicase domain protein [Chthoniobacter flavus
Ellin428]
Length = 591
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 97/231 (41%), Gaps = 26/231 (11%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAID 296
TAA +I E+ + P +L L ++E A +V L F G+ + ++ G + D
Sbjct: 55 TAAFAIPAIERVDGNLRAPQVLILCPTRELAMQVAEEVAKLAFFKRGVRELPIYGGQSYD 114
Query: 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--DTLSLIRQ 353
Q+ GLR + ++ TP R++ + K + + V ++++D D L G D + I
Sbjct: 115 RQLRGLRDGA-QIIIGTPGRVMDHLERKTLRLDQVGMIILDEADRMLDMGFRDDIETILG 173
Query: 354 SISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQS---ACIIQSVNVC--A 408
+ TV F+ ++P N L+ + +N + +Q I QS
Sbjct: 174 QAPAERQTVFFS-----ATMPPAINQLVKKYTKEPVNVRIQAQEMTVPAIDQSYYEVDRR 228
Query: 409 SDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459
S E + + I + D YG F + + V L LK +GYS
Sbjct: 229 SKLEVLCRLIDLQDIKYGIIFCATKMMV----------DELSDHLKARGYS 269
>gi|294818017|ref|ZP_06776659.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
gi|294322832|gb|EFG04967.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
Length = 475
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L LV ++E A +V P +A G+ T ++ G AI+ Q+ LR+ E +V+TP
Sbjct: 115 PLALVLVPTRELAQQVSEALAPYAEALGLRTATVVGGLAINRQVAALRAGA-EVVVATPG 173
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RL LV+ + + V + V+D D +
Sbjct: 174 RLADLVARRDCHLDRVRIAVLDEADQM 200
>gi|18407327|ref|NP_566099.1| DEAD-box ATP-dependent RNA helicase 24 [Arabidopsis thaliana]
gi|75318047|sp|O22907.2|RH24_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 24
gi|16323192|gb|AAL15330.1| At2g47330/T8I13.17 [Arabidopsis thaliana]
gi|20196880|gb|AAB63833.2| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|21700913|gb|AAM70580.1| At2g47330/T8I13.17 [Arabidopsis thaliana]
gi|330255734|gb|AEC10828.1| DEAD-box ATP-dependent RNA helicase 24 [Arabidopsis thaliana]
Length = 760
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVST 313
GP + ++E A ++ K KA+G+ +++ G + Q L++ CE +V+T
Sbjct: 301 GPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCE--IVVAT 358
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG--KP--HTVVFNDCLT 369
P RL+ ++ +KA+ + S LV+D D + +R SI G +P T++F+ +
Sbjct: 359 PGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVR-SIVGQIRPDRQTLLFSATMP 417
Query: 370 YTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKI 414
+ + +L I R+++ + V + I Q VNV SD EK+
Sbjct: 418 WKVEKLAREILSDPI-RVTVGE-VGMANEDITQVVNVIPSDAEKL 460
>gi|417998790|ref|ZP_12639005.1| ATP-dependent RNA helicase [Lactobacillus casei T71499]
gi|410540394|gb|EKQ14909.1| ATP-dependent RNA helicase [Lactobacillus casei T71499]
Length = 428
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L SQE A + R V P K GI + A + Q+ L+ +PE +V+T RL
Sbjct: 66 LLILAPSQELAIQTRDVLTPYAKDIGITVQGVIGSANVKRQLDRLKE-KPEVIVATAGRL 124
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ 353
L+L+ + + + G+ LVVD D + + +R+
Sbjct: 125 LELIQSRKLKLDGLQTLVVDEADEMLRDPGFDQVRE 160
>gi|406027476|ref|YP_006726308.1| ATP-dependent RNA helicase [Lactobacillus buchneri CD034]
gi|405125965|gb|AFS00726.1| ATP-dependent RNA helicase [Lactobacillus buchneri CD034]
Length = 429
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G LL + S E A + + V K G+ + GA I+ Q+ L+ P +V T
Sbjct: 61 GLSLLVIEPSAELAMQTQKVLLEWGKLIGLSVQGIIGGANINRQVDKLKQ-HPNVIVGTT 119
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVP 374
R++ L+ L + + + +V+D D+L DTL+ IR + + +D +T
Sbjct: 120 GRIVNLIDLGKLKLDSLKAIVIDEADNLLSEDTLASIRSLVD------LADDSVTLGFFS 173
Query: 375 AVQNLLLGSINR 386
A QN LL +NR
Sbjct: 174 ATQNDLLAHVNR 185
>gi|323499192|ref|ZP_08104170.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
gi|323315825|gb|EGA68858.1| ATP-dependent RNA helicase [Vibrio sinaloensis DSM 21326]
Length = 418
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 13/130 (10%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A++V +K++ H TV++ G +++ Q+ LR + +V+T
Sbjct: 86 LILVPTRELASQV---AYNVKSYSYHLRDKIKTVAVFGGVSVNPQMLALRGGS-DIIVAT 141
Query: 314 PERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTY 370
P RLL LVS AI + V LV+ DR+ SL + L+ I + + K T++F+
Sbjct: 142 PGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILELLPKKKQTLLFSATFPD 201
Query: 371 TSVPAVQNLL 380
Q+LL
Sbjct: 202 KVTTLAQHLL 211
>gi|302685145|ref|XP_003032253.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8]
gi|300105946|gb|EFI97350.1| hypothetical protein SCHCODRAFT_82297 [Schizophyllum commune H4-8]
Length = 488
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 93/210 (44%), Gaps = 18/210 (8%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFG----IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
GP L L ++E A +++ C FG I +++ GA QI L+ E ++
Sbjct: 134 GPIALVLAPTRELAVQIQQECT---KFGSNSRIRNTAIYGGAPKGPQIRDLQRGV-EVVI 189
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KP--HTVVFNDCL 368
+TP RL+ ++ ++ V+ LV+D D + IR+ +S +P T++F+
Sbjct: 190 ATPGRLIDMLETGKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLMFSATW 249
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
V + N L ++++ + + I Q VC SD EK K I+ L D
Sbjct: 250 P-KDVQKLANDFLKDFIQVNIGSMELAANHNITQITEVC-SDFEKRNKLIKHL-----DQ 302
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
SE KVL VG ++ L+ G+
Sbjct: 303 ISSENAKVLIFVGTKRVADDITRYLRQDGW 332
>gi|74317751|ref|YP_315491.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
gi|74057246|gb|AAZ97686.1| DEAD/DEAH box helicase [Thiobacillus denitrificans ATCC 25259]
Length = 477
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L LV ++E AA+V K K + ++ + G I+ Q L+ + LV+TP
Sbjct: 80 PRCLILVPTRELAAQVEESVKTYGKYLSLTSMVMFGGVNINPQFKALK-ARVDILVATPG 138
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RLL V+ K +D+SGV +LV+D D +
Sbjct: 139 RLLDHVAQKTVDLSGVEILVLDEADRM 165
>gi|373464566|ref|ZP_09556101.1| DEAD/DEAH box helicase [Lactobacillus kisonensis F0435]
gi|371762295|gb|EHO50834.1| DEAD/DEAH box helicase [Lactobacillus kisonensis F0435]
Length = 403
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 17/159 (10%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G LL + S E A + + V K G+ + GA I Q+ L++ P +V T
Sbjct: 61 GLSLLVIEPSAELAMQTQKVLLEWGKLIGLSVEGIIGGANIKRQVDKLKT-HPNVIVGTT 119
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVP 374
R++ L+ L + ++ ++ +V+D D+L DTL IR + P TV L + S
Sbjct: 120 GRIMNLIDLGKLKLASLTAIVIDEADNLLSEDTLDSIRSLVDLAPTTV----TLGFFS-- 173
Query: 375 AVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEK 413
A Q+ LL +NR L I++ +V A D+ +
Sbjct: 174 ATQSDLLTHLNRWFLQD---------IETYDVSAIDDTR 203
>gi|114331652|ref|YP_747874.1| DEAD/DEAH box helicase [Nitrosomonas eutropha C91]
gi|114308666|gb|ABI59909.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
Length = 488
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 260 LFLVSSQEKAAKV-RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L + ++E A ++ SV K K + T + G I+ QIT LR+ E LV+TP RLL
Sbjct: 85 LIMAPTRELAMQIDESVRKYGKYLALRTTVVFGGVNIEPQITELRNGV-EILVATPGRLL 143
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL 342
LV KA++ S +LV+D D +
Sbjct: 144 DLVEHKAVNFSKTEILVLDEADRM 167
>gi|406671543|ref|ZP_11078782.1| hypothetical protein HMPREF9706_01042 [Facklamia hominis CCUG
36813]
gi|405580793|gb|EKB54852.1| hypothetical protein HMPREF9706_01042 [Facklamia hominis CCUG
36813]
Length = 485
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L + ++E A +V+ L K + ++ GA ID QI LRS + + LV TP RLL
Sbjct: 73 LIVAPTRELAIQVQEELYRLSKVLKTNVYVVYGGAPIDKQIKRLRSQKVQVLVGTPGRLL 132
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHT 361
L+ + ++ V LV+D D + + I+ I P T
Sbjct: 133 DLLKRNVLKLNAVQTLVLDEADEMLNMGFIEDIKAIIQQAPET 175
>gi|254387768|ref|ZP_05003006.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
gi|326446864|ref|ZP_08221598.1| DEAD-box RNA-helicase [Streptomyces clavuligerus ATCC 27064]
gi|197701493|gb|EDY47305.1| ATP-dependent RNA helicase [Streptomyces clavuligerus ATCC 27064]
Length = 472
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L LV ++E A +V P +A G+ T ++ G AI+ Q+ LR+ E +V+TP
Sbjct: 112 PLALVLVPTRELAQQVSEALAPYAEALGLRTATVVGGLAINRQVAALRAGA-EVVVATPG 170
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RL LV+ + + V + V+D D +
Sbjct: 171 RLADLVARRDCHLDRVRIAVLDEADQM 197
>gi|449469020|ref|XP_004152219.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 24-like [Cucumis
sativus]
Length = 777
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVST 313
GP + ++E A ++ CK KA G+ +++ G + Q+ L++ CE +V+T
Sbjct: 304 GPIGVICAPTRELAHQIYLECKKFSKAHGLRVSAVYGGMSKFDQLKELKAGCE--IVVAT 361
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG--KP--HTVVFNDCLT 369
P RL+ ++ LKA+ +S + LV+D D + IR SI G +P T++F+ +
Sbjct: 362 PGRLIDMIKLKALTMSKATYLVLDEADRMFDLGFEPQIR-SIVGQIRPDRQTLLFSATMP 420
Query: 370 YTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKI 414
+ +L + R+++ + V + I Q V+V SD EK+
Sbjct: 421 RKVEKLAREILTDPV-RVTVGE-VGMANEDITQVVHVLPSDLEKL 463
>gi|374594345|ref|ZP_09667350.1| DEAD/DEAH box helicase domain protein [Gillisia limnaea DSM 15749]
gi|373872420|gb|EHQ04417.1| DEAD/DEAH box helicase domain protein [Gillisia limnaea DSM 15749]
Length = 380
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 11/90 (12%)
Query: 259 LLFLVSSQEKAAKVRSVCKPLKAFG------IHTVSLHPGAAIDHQITGLRSCEPEFLVS 312
+L LV ++E A +VR V + FG I ++++ G AI+ Q+ L+ LV+
Sbjct: 76 VLVLVPTRELAMQVREV---FRLFGSALPERIKSLAVFGGVAINPQMKALQGVN--ILVA 130
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
TP RLL+LV A+ +S + L++D D +
Sbjct: 131 TPGRLLELVESNAVKLSNIETLILDEADKM 160
>gi|449484206|ref|XP_004156816.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
24-like [Cucumis sativus]
Length = 774
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVST 313
GP + ++E A ++ CK KA G+ +++ G + Q+ L++ CE +V+T
Sbjct: 307 GPIGVICAPTRELAHQIYLECKKFSKAHGLRVSAVYGGMSKFDQLKELKAGCE--IVVAT 364
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG--KP--HTVVFNDCLT 369
P RL+ ++ LKA+ +S + LV+D D + IR SI G +P T++F+ +
Sbjct: 365 PGRLIDMIKLKALTMSKATYLVLDEADRMFDLGFEPQIR-SIVGQIRPDRQTLLFSATMP 423
Query: 370 YTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKI 414
+ +L + R+++ + V + I Q V+V SD EK+
Sbjct: 424 RKVEKLAREILTDPV-RVTVGE-VGMANEDITQVVHVLPSDLEKL 466
>gi|307704897|ref|ZP_07641788.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
gi|307621511|gb|EFO00557.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
Length = 360
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTVQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSL 342
+L+ LK I + V +++D D L
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQL 151
>gi|332535929|ref|ZP_08411636.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
gi|332034692|gb|EGI71243.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis ANT/505]
Length = 422
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKA---FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E A +V K A I TV++ G +++ Q+ LR + +V+TP R
Sbjct: 89 LILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQALRGGA-DIIVATPGR 147
Query: 317 LLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFN 365
LL L+S AI + V+ LV+ DR+ SL + L+ + + K T++F+
Sbjct: 148 LLDLISSNAIKLDKVTTLVLDEADRMLSLGFTEELADLLALMPAKKQTMLFS 199
>gi|409201973|ref|ZP_11230176.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
flavipulchra JG1]
Length = 607
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 253 SFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEFL 310
S P +L L ++E A +V + + G+ ++L+ G + Q++ LR + +
Sbjct: 70 SVKQPQILVLTPTRELAIQVAEAFQQYAKYTKGVEVLALYGGQSYGIQLSALRRG-AQII 128
Query: 311 VSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
V+TP RL+ ++ K ID+SG++ LV+D D +
Sbjct: 129 VATPGRLIDHINRKTIDLSGLNALVLDEADEM 160
>gi|393760514|ref|ZP_10349324.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393161371|gb|EJC61435.1| ATP-dependent RNA helicase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 487
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 15/136 (11%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIHT----VSLHPGAAIDHQITGLRSCEPEFLVS 312
P L L ++E AA+V + ++ + HT + + G I+ Q LR + LV+
Sbjct: 80 PRALILAPTRELAAQVE---ESVRLYSQHTRLRSMVMFGGVNINPQFHALRKPL-DILVA 135
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCLT 369
TP RLL V + +D++GV +LV+D D + + IR+ IS P T++F+ +
Sbjct: 136 TPGRLLDHVRQRTVDLTGVEILVLDEADRMLDMGFIRDIRKIISLMPVERQTLLFSATFS 195
Query: 370 YTSVPAVQNLLLGSIN 385
++ L GS+N
Sbjct: 196 DE----IRELARGSLN 207
>gi|421488776|ref|ZP_15936164.1| DEAD/DEAH box helicase [Streptococcus oralis SK304]
gi|400367993|gb|EJP21008.1| DEAD/DEAH box helicase [Streptococcus oralis SK304]
Length = 360
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRV 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +++ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDHLLDDSQIHFVEKITYYAPRDHQLIYMSATT 180
>gi|373858038|ref|ZP_09600777.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
gi|372452260|gb|EHP25732.1| DEAD/DEAH box helicase domain protein [Bacillus sp. 1NLA3E]
Length = 485
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 84/193 (43%), Gaps = 24/193 (12%)
Query: 185 AIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL---ETSGSSSTIVQIAWIVATAA 241
A+E A+ G E+ +P+ + + S KDI+ +T +T + I
Sbjct: 12 ALEKALSQMGFEEPSPIQAQAIPVAL-----SGKDIIGQAQTGTGKTTAFGVPLIENCKV 66
Query: 242 DSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQIT 300
D A G L L ++E A +V + GI T+ ++ G I+ QI
Sbjct: 67 DEPA--------IQG---LVLAPTRELAVQVAEELNRIGNTKGIRTLPIYGGQDINRQIR 115
Query: 301 GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP- 359
GL++ P + +TP RL+ + K I + + +V+D D + + I + +SG P
Sbjct: 116 GLKN-RPHIIAATPGRLMDHIDRKTIRLQNIHTVVLDEADEMLNMGFIEDIEKILSGIPS 174
Query: 360 --HTVVFNDCLTY 370
T++F+ + +
Sbjct: 175 ERQTLLFSATMPH 187
>gi|296423641|ref|XP_002841362.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637599|emb|CAZ85553.1| unnamed protein product [Tuber melanosporum]
Length = 568
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 103/233 (44%), Gaps = 22/233 (9%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + G+ I QI L+ E +V TP
Sbjct: 39 GPISLIMTPTRELAVQIFKECKPFLKALNLRAVCAYGGSPIKDQIADLKRGA-EIIVCTP 97
Query: 315 ERLLKLV---SLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KP--HTVVFNDCL 368
R++ L+ S + ++ V+ +V+D D + + + IS +P TV+F+
Sbjct: 98 GRMIDLLAANSGRVTNLKRVTYIVLDEADRMFDMGFEPQVMKIISNVRPDRQTVLFSATF 157
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ +L + + +SV + + Q V V A D+ K + +++L Y
Sbjct: 158 PRNMEALARKVLQRPVEIVVGARSVVAPE--VTQIVEVRA-DDAKFHRLLELLGELYD-- 212
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI-----VSHIKN 473
+ + L V + +L+ L +GY SI G + I +S KN
Sbjct: 213 -KDDDARTLIFVDRQESADSLLRDLMRRGYPCMSIHGGKDQIDRDSTISDFKN 264
>gi|158334865|ref|YP_001516037.1| DEAD/DEAH box helicase [Acaryochloris marina MBIC11017]
gi|158305106|gb|ABW26723.1| DEAD/DEAH box helicase [Acaryochloris marina MBIC11017]
Length = 471
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDH 297
TAA S+ E+ + P L L ++E A +V KA G + V+++ G +ID
Sbjct: 54 TAAFSLPILEQLDPTVKTPQALILTPTRELAVQVSEAVYQFKADGALRVVAIYGGQSIDR 113
Query: 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
QI+ LR + +V TP R+L L+S I + +S V+D D +
Sbjct: 114 QISQLRRGA-QLIVGTPGRVLDLLSRGEIILDQLSWFVLDEADEM 157
>gi|213405989|ref|XP_002173766.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces japonicus
yFS275]
gi|212001813|gb|EEB07473.1| ATP-dependent RNA helicase Prp11 [Schizosaccharomyces japonicus
yFS275]
Length = 1056
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 20/214 (9%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP + + ++E A ++ CKP KA + + GA I QI L+ E +V TP
Sbjct: 532 GPVAVIMTPTRELAVQIFRECKPFAKALDLRATCAYGGAPIKDQIAELKRGA-EIVVCTP 590
Query: 315 ERLLKLVSLKAIDVSG------VSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCL 368
R++ +++ + V+ V L DR+ L + I +I V+F+
Sbjct: 591 GRMIDVLNANSGRVTNLHRCTYVVLDEADRMFDLGFEPQVMRILNNIRPDRQVVLFS--- 647
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHAYG 426
+ P L + + + +V +S A ++ + S+E K + +++L G
Sbjct: 648 --ATFPRAMEALARKVLKKPIEITVGGRSVVAAEVEQLVEVRSEESKFPRLLELL----G 701
Query: 427 DHFHSEP-LKVLYIVGKDSKFQNLVSTLKCKGYS 459
+ ++++P ++ L V + L+S L +GYS
Sbjct: 702 ELYNTQPDVRTLVFVDRHESADALLSQLMKRGYS 735
>gi|408790695|ref|ZP_11202309.1| ATP-dependent RNA helicase YfmL [Lactobacillus florum 2F]
gi|408519968|gb|EKK20074.1| ATP-dependent RNA helicase YfmL [Lactobacillus florum 2F]
Length = 408
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 221 LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL- 279
L +GS T+ A+++ A+ +A G + L SQE A +V V +
Sbjct: 38 LSPTGSGKTL---AFLMPILANVLAG--------AGTQAIILEPSQELAIQVTEVARTWA 86
Query: 280 KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339
+ F + L GA + Q L+ PE ++ TP R+L L++ + + + + LV+D
Sbjct: 87 RPFQAKILPLIGGANVKRQQEQLKR-RPEVVIGTPGRVLSLLTERKLKATAMDTLVIDEA 145
Query: 340 DSLSKGDTLSLIRQSISGKPHTV 362
D L + D+L+ ++Q ++ P V
Sbjct: 146 DDLLQDDSLAKVQQILAALPRKV 168
>gi|340966801|gb|EGS22308.1| ATP-dependent RNA helicase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 554
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 24/178 (13%)
Query: 204 NSWGIEFWKCYSSAKDILE---TSG--SSSTIVQIAWIVATAADSIARKEKEGFSFTGPF 258
N+ G+E W+ ++ +D+L+ +G S I + + +A A I + K G T F
Sbjct: 38 NTKGLE-WEDFNLKRDLLKGIFEAGYEKPSPIQEESIPIALAGRDILARAKNGTGKTAAF 96
Query: 259 L----------------LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITG 301
+ L LV ++E A + VCK L K G++ + G + I
Sbjct: 97 VIPALEKINPKVSKIQCLILVPTRELAMQTSQVCKILGKHLGVNVMVTTGGTGLRDDIVR 156
Query: 302 LRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
L+ +V TP R+L L S + D+S + ++D D L + +I Q + P
Sbjct: 157 LQDAV-HIVVGTPGRILDLASKQVADLSECPMFIMDEADKLLSPEFTPVIEQLLQFHP 213
>gi|320546379|ref|ZP_08040695.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812]
gi|320448989|gb|EFW89716.1| ATP-dependent RNA helicase DeaD [Streptococcus equinus ATCC 9812]
Length = 530
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 26/141 (18%)
Query: 221 LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK 280
L+ +S +VQ A ++A + + ++E F F +EK KVRSV
Sbjct: 60 LDKIDTSRNLVQ-ALVIAPTRELAVQGQEELFRF----------GREKGVKVRSV----- 103
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340
+ G++I+ QI LRS +V TP RLL L+ KA+ + V L++D D
Sbjct: 104 ---------YGGSSIEKQIKALRSGA-HIVVGTPGRLLDLIKRKALKLEHVETLILDEAD 153
Query: 341 SLSKGDTLSLIRQSISGKPHT 361
+ L I IS P T
Sbjct: 154 EMLNMGFLEDIEAIISRVPET 174
>gi|260583734|ref|ZP_05851482.1| helicase [Granulicatella elegans ATCC 700633]
gi|260158360|gb|EEW93428.1| helicase [Granulicatella elegans ATCC 700633]
Length = 406
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLK 319
+ LV SQE A ++ V + K + + L GA + QI L+ +PE +V TP RL +
Sbjct: 65 VILVPSQELAQQIGEVIREWKLPELTMLVLAGGANVKRQIENLKK-KPELVVGTPGRLTE 123
Query: 320 LVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
L + + + + V LV+D D L + L R I P
Sbjct: 124 LANQRKLKLHQVQTLVLDEADYLLAQEHLEQTRSFIKKCP 163
>gi|385812099|ref|YP_005848490.1| ATP-dependent RNA helicase [Lactobacillus fermentum CECT 5716]
gi|299782998|gb|ADJ40996.1| ATP-dependent RNA helicase [Lactobacillus fermentum CECT 5716]
Length = 395
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 265 SQEKAAKVRSVCKPLKAFGIHTVSLH---PGAAIDHQITGLRSCEPEFLVSTPERLLKLV 321
S+E A ++ + K L F +++H G +HQ+ L +P+ ++ TP R+L L+
Sbjct: 80 SRELAYQIYNAAKQLNRFATTPLTIHNYVGGTDKEHQVEQLNRRQPQLVIGTPGRILDLI 139
Query: 322 SLKAIDVSGVSLLVVDRLD-SLSKG--DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQN 378
+ +A+D+ S V+D D +L G +T+ I K +VF+ + P ++
Sbjct: 140 NSQALDIHTASQFVIDEADMTLDMGFLETVDQIAARFPEKLQMMVFSATIPQGLRPFLKK 199
Query: 379 LL 380
L
Sbjct: 200 YL 201
>gi|312864570|ref|ZP_07724801.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei
F0415]
gi|311099697|gb|EFQ57910.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus downei
F0415]
Length = 521
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 28/138 (20%)
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293
A ++A + + ++E F F +EK KVRSV + G+
Sbjct: 72 ALVIAPTRELAVQSQEELFRF----------GREKGVKVRSV--------------YGGS 107
Query: 294 AIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ 353
+ID QI LRS +V TP RLL L+ KA+ ++ V L++D D + L I
Sbjct: 108 SIDKQIKALRSG-AHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIEA 166
Query: 354 SISGKP---HTVVFNDCL 368
IS P T++F+ +
Sbjct: 167 IISHVPDERQTLLFSATM 184
>gi|304387310|ref|ZP_07369503.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis ATCC 13091]
gi|304338693|gb|EFM04810.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis ATCC 13091]
Length = 462
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 93/199 (46%), Gaps = 24/199 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSW--GIEFWKCYSSAKDILETSGSSSTIVQI 233
KF L L+ I +A+ +G E P+ + +E +SA+ +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQ-----TGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQKLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--D 346
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D L G D
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFID 169
Query: 347 TLSLIRQSISGKPHTVVFN 365
+ I ++ T++F+
Sbjct: 170 DIETIVEATPSDRQTLLFS 188
>gi|148978426|ref|ZP_01814920.1| putative ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
gi|145962452|gb|EDK27731.1| putative ATP-dependent RNA helicase [Vibrionales bacterium SWAT-3]
Length = 428
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 13/115 (11%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A + V +K++ +H TV + G +++ Q+ LR + LV+T
Sbjct: 89 LILVPTRELA---KQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQSLRGGT-DILVAT 144
Query: 314 PERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFN 365
P RLL L+S AI + V LV+ DR+ SL + L I + + K T++F+
Sbjct: 145 PGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFS 199
>gi|313668514|ref|YP_004048798.1| ATP-dependent RNA helicase [Neisseria lactamica 020-06]
gi|313005976|emb|CBN87433.1| putative ATP-dependent RNA helicase [Neisseria lactamica 020-06]
Length = 462
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 18/158 (11%)
Query: 217 AKDILET--SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR- 273
+DI+ + +GS T A+++ T R EK G GP L L ++E AA+V
Sbjct: 40 GRDIMASAQTGSGKTA---AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEK 93
Query: 274 ---SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSG 330
+ K ++ F TVS+ GA+ +Q L S + +V+TP RL+ L+ +D +
Sbjct: 94 NALAYAKNMRWF--RTVSIVGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFAR 150
Query: 331 VSLLVVDRLDS-LSKG--DTLSLIRQSISGKPHTVVFN 365
+ +L++D D L G D + I ++ T++F+
Sbjct: 151 LEVLILDEADRMLDMGFIDDIETIVEATPSDRQTLLFS 188
>gi|255089334|ref|XP_002506589.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
gi|226521861|gb|ACO67847.1| dead-box ATP-dependent RNA helicase [Micromonas sp. RCC299]
Length = 576
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 18/204 (8%)
Query: 247 KEKEGFSF---TGPFLLFLVSSQEKAAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGL 302
+ ++G SF GP + L ++E A +++ K +A G+++V L+ GA HQ+ L
Sbjct: 188 RGRQGPSFPRPVGPTVTVLAPTRELATQIQDETAKFGRAIGMYSVCLYGGAPKGHQLREL 247
Query: 303 RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--- 359
R P+ ++TP RL + A+++ + +V+D D + IR+ + P
Sbjct: 248 RHG-PQIAIATPGRLNDFLESGAVNLGSSTYVVLDEADRMLDMGFEPQIRKILQRAPAQR 306
Query: 360 HTVVFNDCLTYTSVPAVQNLLLGSI--NRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417
T+ F V +L I N + VA++ I Q V VC +K +
Sbjct: 307 QTLFFTATWPRAVVRVATAILTNPIQVNIGDTDTLVANKD--ITQVVEVCGG-FQKQQRL 363
Query: 418 IQVLDHAYGDHFHSEPLKVLYIVG 441
++VL + ++PLK + G
Sbjct: 364 MEVLRNP-----PTQPLKAIVFCG 382
>gi|256390879|ref|YP_003112443.1| DEAD/DEAH box helicase [Catenulispora acidiphila DSM 44928]
gi|256357105|gb|ACU70602.1| DEAD/DEAH box helicase domain protein [Catenulispora acidiphila DSM
44928]
Length = 854
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 224 SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK-AF 282
+GS T+ +A ARK K P L LV ++E A +V P A
Sbjct: 111 TGSGKTLAFGLAALANLKGKRARKGK-------PLALVLVPTRELAMQVSDALTPYGFAV 163
Query: 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
G +++ GA + Q+ LR E LV+TP RL L+ D+S V + ++D D +
Sbjct: 164 GADIAAVYGGAPMYKQVYSLRRG-VELLVATPGRLTDLIEQGECDLSEVEIAILDEADQM 222
Query: 343 S 343
+
Sbjct: 223 A 223
>gi|226290234|gb|EEH45718.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5
[Paracoccidioides brasiliensis Pb18]
Length = 1079
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 15/151 (9%)
Query: 198 DNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQIAWIVATAADSIARKEKEGFSFT 255
+NP + S I S +D++ +GS TI + + D + EG
Sbjct: 488 ENPTSIQSQAI---PAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLENMEG---- 540
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
P L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 541 -PIGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIIVCTP 598
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL 342
R++ L++ A V+ V+ +V+D D +
Sbjct: 599 GRMIDLLAANAGRVTNLRRVTYVVLDEADRM 629
>gi|401564090|ref|ZP_10805009.1| DEAD/DEAH box helicase [Selenomonas sp. FOBRC6]
gi|400189185|gb|EJO23295.1| DEAD/DEAH box helicase [Selenomonas sp. FOBRC6]
Length = 424
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L + ++E A ++ V +PL K GI T+ ++ GA I+ Q LR P+ ++ TP RLL
Sbjct: 74 LVIAPTRELAIQIERVAEPLGKELGIGTIVIYGGADIERQKEKLRR-HPQLIIGTPGRLL 132
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSK 344
V + + V+ +V+D D + K
Sbjct: 133 DHVRRGTLALGSVNKIVLDEADEMLK 158
>gi|313677314|ref|YP_004055310.1| dead/deah box helicase domain protein [Marivirga tractuosa DSM
4126]
gi|312944012|gb|ADR23202.1| DEAD/DEAH box helicase domain protein [Marivirga tractuosa DSM
4126]
Length = 380
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 12/139 (8%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH---TVSLHPGAAIDHQITGLRSCEPEFLVST 313
P +L LV ++E + +V V K + T+++ G +++ Q+ G+ E + LV+T
Sbjct: 74 PQVLILVPTRELSQQVLEVFKLFVDTNRNHSKTMAVFGGTSVNPQMQGM--GEVKILVAT 131
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGD---TLSLIRQSISGKPHTVVFNDCLTY 370
P RLL LVS A+ +S + LLV+D D + + L I + I G ++F+ L+
Sbjct: 132 PGRLLDLVSSNALKLSSLQLLVIDEADKILNANFKKELDEILKIIPGTAQKLLFSATLS- 190
Query: 371 TSVPAVQNLLLGSINRLSL 389
P VQ L +N+ S+
Sbjct: 191 ---PDVQKLKQLYLNKPSI 206
>gi|421744544|ref|ZP_16182519.1| DNA/RNA helicase, superfamily II [Streptomyces sp. SM8]
gi|406687038|gb|EKC91084.1| DNA/RNA helicase, superfamily II [Streptomyces sp. SM8]
Length = 478
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L LV ++E A +V P + G+ T ++ G +I Q T LR E +V+TP
Sbjct: 106 PLALVLVPTRELAQQVTDALAPYARELGLRTATVVGGMSIGRQATALREGA-EVVVATPG 164
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLS 343
RLL LV K + + V + +D D ++
Sbjct: 165 RLLDLVERKDVRLDRVEITALDEADQMA 192
>gi|359147410|ref|ZP_09180717.1| ATP-dependent RNA helicase [Streptomyces sp. S4]
Length = 478
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L LV ++E A +V P + G+ T ++ G +I Q T LR E +V+TP
Sbjct: 106 PLALVLVPTRELAQQVTDALAPYARELGLRTATVVGGMSIGRQATALREGA-EVVVATPG 164
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLS 343
RLL LV K + + V + +D D ++
Sbjct: 165 RLLDLVERKDVRLDRVEITALDEADQMA 192
>gi|331702004|ref|YP_004398963.1| DEAD/DEAH box helicase [Lactobacillus buchneri NRRL B-30929]
gi|329129347|gb|AEB73900.1| DEAD/DEAH box helicase domain protein [Lactobacillus buchneri NRRL
B-30929]
Length = 429
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G LL + S E A + + V K G+ + GA I+ Q+ L+ P +V T
Sbjct: 61 GLSLLVIEPSAELAMQTQKVLLEWGKLIGLSVQGIIGGANINRQVDKLKQ-HPNVIVGTT 119
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVP 374
R++ L+ L + + + +V+D D+L DTL+ IR + + +D +T
Sbjct: 120 GRIVNLIDLGKLKLDSLKAIVIDEADNLLSEDTLASIRSLVD------LADDSVTLGFFS 173
Query: 375 AVQNLLLGSINR 386
A QN LL +NR
Sbjct: 174 ATQNDLLAHVNR 185
>gi|330798075|ref|XP_003287081.1| hypothetical protein DICPUDRAFT_151154 [Dictyostelium purpureum]
gi|325082917|gb|EGC36384.1| hypothetical protein DICPUDRAFT_151154 [Dictyostelium purpureum]
Length = 565
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 106/238 (44%), Gaps = 18/238 (7%)
Query: 198 DNPLFVNSWGIEFWKCYSSAKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFT 255
+ P V S G W S +D+L S GS T+ + A I + ++ ++
Sbjct: 149 EEPTPVQSLG---WPIALSGRDLLAVSKTGSGKTLS----FILPAIQHILEQPRQS-AYH 200
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP +L + ++E A ++ + L A I+ L+ G Q +R+ +P+ ++ TP
Sbjct: 201 GPNVLVVAPTRELACQIAEESREFLIANRINKALLYGGEPKSSQAYQIRN-QPKIIIGTP 259
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYT 371
R+L ++ + VS +V+D D L + G+ + + SI +P V T+
Sbjct: 260 GRILDFYDSGSLQLKNVSYMVIDEADRLLEMGFGEDMEKLFSSI--RPDRQVLYWSATWP 317
Query: 372 -SVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
V + + + L + S S + I Q+ ++ + +K+ K ++ L+ Y ++
Sbjct: 318 KKVSQLADKYIKDPIHLQIGSSALSANKNITQNFSIVEREADKVEKLLETLEQIYNNN 375
>gi|209964196|ref|YP_002297111.1| DEAD/DEAH box helicase [Rhodospirillum centenum SW]
gi|209957662|gb|ACI98298.1| DEAD/DEAH box helicase protein [Rhodospirillum centenum SW]
Length = 528
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP +L L ++E A++V + L FG I T ++ G Q+ LR + +V+TP
Sbjct: 81 GPRVLVLTPTRELASQVLESVRNLSKFGRIQTGTILGGMPYRQQLEMLRR-RVDLIVATP 139
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--DTLSLIRQSISGKPHTVVFNDCLTYT 371
RL+ + +D+SGV +LV+D D L G + + I + + T++F L T
Sbjct: 140 GRLMDHMERGRLDLSGVEVLVLDEADRMLDMGFREAVEFIAAACPAERQTLLFTATLDRT 199
Query: 372 SVPAVQNL 379
+ Q L
Sbjct: 200 AERLAQTL 207
>gi|421544660|ref|ZP_15990736.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM140]
gi|421546775|ref|ZP_15992820.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM183]
gi|421549027|ref|ZP_15995051.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM2781]
gi|421552978|ref|ZP_15998950.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM576]
gi|421557466|ref|ZP_16003371.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 80179]
gi|421561448|ref|ZP_16007295.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM2657]
gi|421567716|ref|ZP_16013450.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM3001]
gi|402323020|gb|EJU58470.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM183]
gi|402323851|gb|EJU59293.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM140]
gi|402325706|gb|EJU61115.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM2781]
gi|402330157|gb|EJU65506.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM576]
gi|402335104|gb|EJU70379.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis 80179]
gi|402338379|gb|EJU73614.1| helicase conserved C-terminal domain protein [Neisseria
meningitidis NM2657]
gi|402343749|gb|EJU78895.1| ATP-dependent RNA helicase RhlE [Neisseria meningitidis NM3001]
Length = 462
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 93/199 (46%), Gaps = 24/199 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSW--GIEFWKCYSSAKDILETSGSSSTIVQI 233
KF L L+ I +A+ +G E P+ + +E +SA+ +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQ-----TGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQKLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--D 346
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D L G D
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFID 169
Query: 347 TLSLIRQSISGKPHTVVFN 365
+ I ++ T++F+
Sbjct: 170 DIETIVEATPSDRQTLLFS 188
>gi|157150328|ref|YP_001450240.1| DEAD/DEAH box helicase [Streptococcus gordonii str. Challis substr.
CH1]
gi|157075122|gb|ABV09805.1| DEAD RNA helicase [Streptococcus gordonii str. Challis substr. CH1]
Length = 371
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 209 EFWKCYSSAKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQ 266
E ++ SS K +L S G+ T+ A++ +K ++ LL L +
Sbjct: 37 EIFELISSGKSVLGISPTGTGKTL---AYLFPCLLKLTPKKAQQ--------LLILAPNT 85
Query: 267 EKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA 325
E A ++ VCK + G+++ G++ QI L+ PE ++ TP R+ +LV LK
Sbjct: 86 ELAGQIFEVCKSWAGSLGLNSQLFISGSSQKRQIERLKKG-PEIIIGTPGRIFELVKLKK 144
Query: 326 IDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
I + V +V+D D L + + + P H +V+
Sbjct: 145 IKMMNVDTIVLDEFDQLLSDSQYHFVDKIVRYAPRDHQLVY 185
>gi|422110316|ref|ZP_16380378.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378859|emb|CBX22564.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 462
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 18/158 (11%)
Query: 217 AKDILET--SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR- 273
+DI+ + +GS T A+++ T R EK G GP L L ++E AA+V
Sbjct: 40 GRDIMASAQTGSGKTA---AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEK 93
Query: 274 ---SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSG 330
+ K ++ F TVS+ GA+ +Q L S + +V+TP RL+ L+ +D +
Sbjct: 94 NALAYAKNMRWF--RTVSIVGGASFGYQTRAL-SKPVDLIVATPGRLMDLMRSGKVDFAR 150
Query: 331 VSLLVVDRLDS-LSKG--DTLSLIRQSISGKPHTVVFN 365
+ +L++D D L G D + I ++ T++F+
Sbjct: 151 LEVLILDEADRMLDMGFIDDIETIVEATPSDRQTLLFS 188
>gi|421532550|ref|ZP_15978908.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae
STIR-CD-17]
gi|403642219|gb|EJZ03081.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae
STIR-CD-17]
Length = 516
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 28/138 (20%)
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293
A I+A + + ++E F F ++K KVRSV + G+
Sbjct: 72 ALIIAPTRELAVQSQEELFRF----------GRDKGVKVRSV--------------YGGS 107
Query: 294 AIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ 353
+I+ QI LRS P +V TP RLL L+ KA+ ++ + L++D D + L I
Sbjct: 108 SIEKQIKALRSGAP-VVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEA 166
Query: 354 SISGKP---HTVVFNDCL 368
IS P T++F+ +
Sbjct: 167 IISRVPEARQTLLFSATM 184
>gi|254571525|ref|XP_002492872.1| RNA helicase in the DEAD-box family, necessary for prespliceosome
formation [Komagataella pastoris GS115]
gi|238032670|emb|CAY70693.1| RNA helicase in the DEAD-box family, necessary for prespliceosome
formation [Komagataella pastoris GS115]
gi|328353117|emb|CCA39515.1| ATP-dependent RNA helicase DDX46/PRP5 [Komagataella pastoris CBS
7435]
Length = 784
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 120/254 (47%), Gaps = 23/254 (9%)
Query: 216 SAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
S KD++ +GS T+ A+++ I++ + E S GP + L ++E A ++
Sbjct: 251 SGKDLIGIAKTGSGKTL---AFLLPMFRQIISQPDPE--SGEGPIGVILTPTRELALQIF 305
Query: 274 SVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLV---SLKAIDVS 329
CKP +K+ + + ++ GA+I QI+ ++ F V TP RL+ L+ S + ++S
Sbjct: 306 KECKPFMKSLNLKGICVYGGASISQQISDIKK-RVHFAVCTPGRLIDLLTANSGRVTNLS 364
Query: 330 GVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCLTYTSVPAVQNLLLGSINR 386
S LV+D D + G +++ + +P T+VF+ + +L +
Sbjct: 365 RTSYLVLDEADRMFDMGFEPQVMKIIPNTRPDRQTLVFSATFPPKMEALAKKVLNNPLEV 424
Query: 387 LSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPL-KVLYIVGKDSK 445
+ +SV + + I Q V V +E+ K +++L G +P KVL V +
Sbjct: 425 IVGEKSVVADT--ITQKVFVI-DPQERFSKLLELL----GTFKSKDPTGKVLVFVERQDS 477
Query: 446 FQNLVSTLKCKGYS 459
L++ L +GY+
Sbjct: 478 ADVLLTNLLKRGYN 491
>gi|91793881|ref|YP_563532.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91715883|gb|ABE55809.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 426
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 25/209 (11%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIHT------VSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A + V K++ +H+ V+ G +++ Q+ LR + +V+T
Sbjct: 85 LVLVPTRELA---KQVADSFKSYAVHSNGAIKVVAAFGGVSVNTQMLALRGGA-DIVVAT 140
Query: 314 PERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTY 370
P RLL L+S A+ ++ VS LV+ DR+ SL D + I + K T++F+
Sbjct: 141 PGRLLDLLSSNALKLADVSTLVLDEADRMLSLGFTDEIGQILGLLPKKKQTLLFSATFP- 199
Query: 371 TSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFH 430
V + + LL S + L +S+ ++Q V +++ L L H +H
Sbjct: 200 EEVRQLTDALLNSPLEIQLQN---PESSTLVQRVMTVNREKKTAL-----LAHLLNEH-- 249
Query: 431 SEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459
+ +VL VG + +L L +G +
Sbjct: 250 -QWRQVLIFVGAKNSCNHLAQKLAKRGIT 277
>gi|328771122|gb|EGF81162.1| hypothetical protein BATDEDRAFT_10391 [Batrachochytrium
dendrobatidis JAM81]
Length = 521
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVST 313
GP L L ++E A ++ K KA+ G+ L+ G + + Q LR+ E LV+T
Sbjct: 140 GPIGLVLAPTRELAHQIYLEAKKFSKAYQGVRVTVLYGGVSKNDQFKELRAGV-EILVAT 198
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
P RL+ L+ +KA +++ V+ LV+D D +
Sbjct: 199 PGRLIDLIKMKATNLTRVTYLVLDEADQM 227
>gi|307204940|gb|EFN83479.1| Probable ATP-dependent RNA helicase DDX43 [Harpegnathos saltator]
Length = 633
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 71/156 (45%), Gaps = 14/156 (8%)
Query: 190 MRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL---ETSGSSSTIVQIAWIVATAADSIAR 246
+R G ++ +P+ +W I S +D++ +T + + ++ S R
Sbjct: 239 IRKQGFQKPSPIQCQAWPILL-----SGQDLIGIAQTGTGKTLAFLLPALIHIDGQSTPR 293
Query: 247 KEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCE 306
E++G P +L + ++E A ++ GI V ++ G QI + +
Sbjct: 294 SERKG-----PNVLVMAPTRELALQIEKEVGKYSYHGIKAVCVYGGGNRKEQIN-IVTKG 347
Query: 307 PEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
+ +++TP RL LV K +DV+ V+ L++D D +
Sbjct: 348 VQIVIATPGRLNDLVQAKVLDVTSVTYLILDEADRM 383
>gi|242767802|ref|XP_002341440.1| DEAD/DEAH box RNA helicase [Talaromyces stipitatus ATCC 10500]
gi|218724636|gb|EED24053.1| DEAD/DEAH box RNA helicase [Talaromyces stipitatus ATCC 10500]
Length = 1175
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 615 GPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIVVCTP 673
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL 342
R++ L++ A V+ V+ +V+D D +
Sbjct: 674 GRMIDLLAANAGRVTNLRRVTYVVLDEADRM 704
>gi|385340268|ref|YP_005894140.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
G2136]
gi|416203761|ref|ZP_11620112.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
961-5945]
gi|433467509|ref|ZP_20424963.1| helicase domain protein [Neisseria meningitidis 87255]
gi|325142563|gb|EGC64962.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
961-5945]
gi|325198512|gb|ADY93968.1| putative ATP-dependent RNA helicase rhlE [Neisseria meningitidis
G2136]
gi|432202343|gb|ELK58407.1| helicase domain protein [Neisseria meningitidis 87255]
Length = 462
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 21/173 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSW--GIEFWKCYSSAKDILETSGSSSTIVQI 233
KF L L+ I +A+ +G E P+ + +E +SA+ +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQ-----TGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQKLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D +
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRM 162
>gi|297828467|ref|XP_002882116.1| hypothetical protein ARALYDRAFT_483908 [Arabidopsis lyrata subsp.
lyrata]
gi|297327955|gb|EFH58375.1| hypothetical protein ARALYDRAFT_483908 [Arabidopsis lyrata subsp.
lyrata]
Length = 739
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVST 313
GP + ++E A ++ K KA+G+ +++ G + Q L++ CE +V+T
Sbjct: 302 GPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCE--IVVAT 359
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG--KP--HTVVFNDCLT 369
P RL+ ++ +KA+ + S LV+D D + +R SI G +P T++F+ +
Sbjct: 360 PGRLIDMLKIKALTMMRASYLVLDEADRMFDLGFEPQVR-SIVGQIRPDRQTLLFSATMP 418
Query: 370 YTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKI 414
+ + +L I R+++ + V + I Q VNV SD EK+
Sbjct: 419 WKVEKLAREILSDPI-RVTVGE-VGMANEDITQVVNVIPSDAEKL 461
>gi|227535444|ref|ZP_03965493.1| ATP-dependent RNA helicase [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|301066125|ref|YP_003788148.1| superfamily II DNA and RNA helicase [Lactobacillus casei str.
Zhang]
gi|417989297|ref|ZP_12629807.1| ATP-dependent RNA helicase [Lactobacillus casei A2-362]
gi|418001696|ref|ZP_12641831.1| ATP-dependent RNA helicase [Lactobacillus casei UCD174]
gi|418004794|ref|ZP_12644804.1| ATP-dependent RNA helicase [Lactobacillus casei UW1]
gi|418007716|ref|ZP_12647592.1| ATP-dependent RNA helicase [Lactobacillus casei UW4]
gi|227186927|gb|EEI66994.1| ATP-dependent RNA helicase [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|300438532|gb|ADK18298.1| Superfamily II DNA and RNA helicase [Lactobacillus casei str.
Zhang]
gi|410538900|gb|EKQ13444.1| ATP-dependent RNA helicase [Lactobacillus casei A2-362]
gi|410545957|gb|EKQ20235.1| ATP-dependent RNA helicase [Lactobacillus casei UCD174]
gi|410548268|gb|EKQ22474.1| ATP-dependent RNA helicase [Lactobacillus casei UW4]
gi|410548725|gb|EKQ22914.1| ATP-dependent RNA helicase [Lactobacillus casei UW1]
Length = 428
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L SQE A + R V P K GI + A + Q+ L+ +PE +V+T RL
Sbjct: 66 LLILAPSQELAIQTRDVLTPYAKDIGITVQGVIGSANVKRQLDRLKE-KPEVVVATAGRL 124
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ 353
L+L+ + + + G+ LVVD D + + +R+
Sbjct: 125 LELIQSRKLKLDGLQTLVVDEADEMLRDPGFDQVRE 160
>gi|158312770|ref|YP_001505278.1| DEAD/DEAH box helicase [Frankia sp. EAN1pec]
gi|158108175|gb|ABW10372.1| DEAD/DEAH box helicase domain protein [Frankia sp. EAN1pec]
Length = 671
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 257 PFLLFLVSSQEKAAKVRS-VCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L +V ++E +V + + + G+ +S++ G A + Q++ LR+ + +V TP
Sbjct: 177 PQALVVVPTRELCVQVTADIARAGLGRGLRVLSVYGGRAYEPQLSALRAGV-DIVVGTPG 235
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
RLL L KA+D++GV LV+D D + L + + ++ P HT++F+ +
Sbjct: 236 RLLDLARQKALDLAGVRALVLDEADEMLDLGFLPDVERILAFLPEQRHTMLFSATM 291
>gi|116494578|ref|YP_806312.1| superfamily II DNA/RNA helicase [Lactobacillus casei ATCC 334]
gi|116104728|gb|ABJ69870.1| Superfamily II DNA and RNA helicase [Lactobacillus casei ATCC 334]
Length = 428
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L SQE A + R V P K GI + A + Q+ L+ +PE +V+T RL
Sbjct: 66 LLILAPSQELAIQTRDVLTPYAKDIGITVQGVIGSANVKRQLDRLKE-KPEVVVATAGRL 124
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ 353
L+L+ + + + G+ LVVD D + + +R+
Sbjct: 125 LELIQSRKLKLDGLQTLVVDEADEMLRDPGFDQVRE 160
>gi|449018206|dbj|BAM81608.1| similar to ATP-dependent RNA helicase [Cyanidioschyzon merolae
strain 10D]
Length = 581
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 20/146 (13%)
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293
A+++ T D++ + + G + + P LL +V SQE +V C+ + I L
Sbjct: 196 AYLLPTI-DTLCEEIERGSARSAPTLLVMVPSQELVVQVVRECERFASLSIRAQGLIGLT 254
Query: 294 AIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSL-------LVVDRLDSLSKG- 345
+++ Q+ LR P+ +V TP RL++++ ID G L +V+D D L +G
Sbjct: 255 SVERQLERLRKLPPQVIVGTPGRLIEVM----IDRRGRRLPAASFETVVLDEADRLLEGV 310
Query: 346 ---DTLSLIRQ----SISGKPHTVVF 364
+T L+R + SGK VF
Sbjct: 311 HLEETERLLRHFRSPTSSGKERQFVF 336
>gi|424778219|ref|ZP_18205170.1| ATP-dependent RNA helicase [Alcaligenes sp. HPC1271]
gi|422887047|gb|EKU29458.1| ATP-dependent RNA helicase [Alcaligenes sp. HPC1271]
Length = 487
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 15/136 (11%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIHT----VSLHPGAAIDHQITGLRSCEPEFLVS 312
P L L ++E AA+V + ++ + HT + + G I+ Q LR + LV+
Sbjct: 80 PRALILAPTRELAAQVE---ESVRLYSQHTRLRSMVMFGGVNINPQFHALRKPL-DILVA 135
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCLT 369
TP RLL V + +D++GV +LV+D D + + IR+ IS P T++F+ +
Sbjct: 136 TPGRLLDHVRQRTVDLTGVEILVLDEADRMLDMGFIRDIRKIISLMPVDRQTLLFSATFS 195
Query: 370 YTSVPAVQNLLLGSIN 385
++ L GS+N
Sbjct: 196 DE----IRELARGSLN 207
>gi|54301879|ref|YP_131872.1| ATP-dependent RNA helicase [Photobacterium profundum SS9]
gi|46915299|emb|CAG22072.1| putative ATP-dependent RNA helicase [Photobacterium profundum SS9]
Length = 455
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 13/130 (10%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A + V +K++ +H TV++ G + + Q+ LR + LV+T
Sbjct: 116 LILVPTRELA---KQVADSIKSYAVHFNGAIKTVAVFGGVSANTQMLALRGGT-DILVAT 171
Query: 314 PERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTY 370
P RLL L+S AI + V LV+ DR+ SL D LS + + T++F+
Sbjct: 172 PGRLLDLISSNAIKLDRVKTLVLDEADRMLSLGFTDELSALLGLLPKNKQTLLFSATFPE 231
Query: 371 TSVPAVQNLL 380
Q LL
Sbjct: 232 QVQTLTQELL 241
>gi|319938761|ref|ZP_08013125.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
1_2_62CV]
gi|319811811|gb|EFW08077.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
1_2_62CV]
Length = 565
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 29/151 (19%)
Query: 221 LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK 280
LE + + IVQ A ++A + + ++E F F + K KVRSV
Sbjct: 107 LEKINTENPIVQ-ALVIAPTRELAVQSQEELFRF----------GRSKGVKVRSV----- 150
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340
+ G++I+ QI LRS +V TP RLL L+ KA+ ++ V L++D D
Sbjct: 151 ---------YGGSSIEKQIKALRSG-AHIVVGTPGRLLDLIKRKALKLNHVETLILDEAD 200
Query: 341 SLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+ L I IS P T++F+ +
Sbjct: 201 EMLNMGFLEDIEAIISRVPEERQTLLFSATM 231
>gi|359461678|ref|ZP_09250241.1| DEAD/DEAH box helicase [Acaryochloris sp. CCMEE 5410]
Length = 471
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDH 297
TAA S+ E+ + P L L ++E A +V KA G + V+++ G +ID
Sbjct: 54 TAAFSLPILEQLDPTVKTPQALILTPTRELAVQVSEAIYQFKADGALRVVAIYGGQSIDR 113
Query: 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
QI+ LR + +V TP R+L L+S I + +S V+D D +
Sbjct: 114 QISQLRRGA-QLIVGTPGRVLDLLSRGEIVLDQLSWFVLDEADEM 157
>gi|417986387|ref|ZP_12626958.1| ATP-dependent RNA helicase [Lactobacillus casei 32G]
gi|410526111|gb|EKQ01002.1| ATP-dependent RNA helicase [Lactobacillus casei 32G]
Length = 428
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L SQE A + R V P K GI + A + Q+ L+ +PE +V+T RL
Sbjct: 66 LLILAPSQELAIQTRDVLTPYAKDIGITVQGVIGSANVKRQLDRLKE-KPEVVVATAGRL 124
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ 353
L+L+ + + + G+ LVVD D + + +R+
Sbjct: 125 LELIQSRKLKLDGLQTLVVDEADEMLRDPGFDQVRE 160
>gi|417980280|ref|ZP_12620961.1| ATP-dependent RNA helicase [Lactobacillus casei 12A]
gi|410525507|gb|EKQ00409.1| ATP-dependent RNA helicase [Lactobacillus casei 12A]
Length = 428
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L SQE A + R V P K GI + A + Q+ L+ +PE +V+T RL
Sbjct: 66 LLILAPSQELAIQTRDVLTPYAKDIGITVQGVIGSANVKRQLDRLKE-KPEVVVATAGRL 124
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ 353
L+L+ + + + G+ LVVD D + + +R+
Sbjct: 125 LELIQSRKLKLDGLQTLVVDEADEMLRDPGFDQVRE 160
>gi|237709995|ref|ZP_04540476.1| ATP-independent RNA helicase [Bacteroides sp. 9_1_42FAA]
gi|265753646|ref|ZP_06089001.1| ATP-independent RNA helicase [Bacteroides sp. 3_1_33FAA]
gi|345515395|ref|ZP_08794897.1| ATP-independent RNA helicase [Bacteroides dorei 5_1_36/D4]
gi|423238455|ref|ZP_17219571.1| hypothetical protein HMPREF1065_00194 [Bacteroides dorei
CL03T12C01]
gi|229436027|gb|EEO46104.1| ATP-independent RNA helicase [Bacteroides dorei 5_1_36/D4]
gi|229456088|gb|EEO61809.1| ATP-independent RNA helicase [Bacteroides sp. 9_1_42FAA]
gi|263235360|gb|EEZ20884.1| ATP-independent RNA helicase [Bacteroides sp. 3_1_33FAA]
gi|392648138|gb|EIY41828.1| hypothetical protein HMPREF1065_00194 [Bacteroides dorei
CL03T12C01]
Length = 437
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDI--LETSGSSSTIVQIAWIVATAADS 243
IEN + + +E+ NP+ I+ WK KD+ L +GS T+ + +V +
Sbjct: 2 IENILANLKIERLNPM--QEASIDAWK---EGKDLILLSPTGSGKTLAYLLPLVQSLKPG 56
Query: 244 IARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK----PLKAFGIHTVSLHPGAAIDHQI 299
I TG + LV S+E A ++ V K P KA VS + G +
Sbjct: 57 I----------TGVQAIVLVPSRELALQIDQVFKSMNTPFKA-----VSCYGGRPAMEEH 101
Query: 300 TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340
++ +P ++ TP R+ +S + D VS+L++D D
Sbjct: 102 RTIKGVQPSVIIGTPGRMNDHLSKQNFDADTVSILIIDEFD 142
>gi|261400326|ref|ZP_05986451.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC
23970]
gi|269209952|gb|EEZ76407.1| putative ATP-dependent RNA helicase RhlE [Neisseria lactamica ATCC
23970]
Length = 462
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 18/158 (11%)
Query: 217 AKDILET--SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR- 273
+DI+ + +GS T A+++ T R EK G GP L L ++E AA+V
Sbjct: 40 GRDIMASAQTGSGKTA---AFLLPTLQRLTKRSEKPG---KGPRALVLTPTRELAAQVEK 93
Query: 274 ---SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSG 330
+ K ++ F TVS+ GA+ +Q L S + +V+TP RL+ L+ +D +
Sbjct: 94 NALAYAKNMRWF--RTVSIVGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFAR 150
Query: 331 VSLLVVDRLDS-LSKG--DTLSLIRQSISGKPHTVVFN 365
+ +L++D D L G D + I ++ T++F+
Sbjct: 151 LEVLILDEADRMLDMGFIDDIETIVEATPSDRQTLLFS 188
>gi|239631820|ref|ZP_04674851.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|239526285|gb|EEQ65286.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
subsp. paracasei 8700:2]
Length = 428
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L SQE A + R V P K GI + A + Q+ L+ +PE +V+T RL
Sbjct: 66 LLILAPSQELAIQTRDVLTPYAKDIGITVQGVIGSANVKRQLDRLKE-KPEVVVATAGRL 124
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ 353
L+L+ + + + G+ LVVD D + + +R+
Sbjct: 125 LELIQSRKLKLDGLQTLVVDEADEMLRDPGFDQVRE 160
>gi|386578397|ref|YP_006074803.1| ATP-dependent RNA helicase [Streptococcus suis GZ1]
gi|292558860|gb|ADE31861.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
suis GZ1]
Length = 502
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS- 341
G+ S++ G++I+ QI LRS +V TP RLL L+ KA+ + GV L++D D
Sbjct: 85 GVKVRSVYGGSSIEKQIKALRSGA-HIVVGTPGRLLDLIKRKALKLDGVETLILDEADEM 143
Query: 342 LSKG--DTLSLIRQSISGKPHTVVFNDCL 368
L+ G D + I + + T++F+ +
Sbjct: 144 LNMGFLDDIEAIIERVPESRQTLLFSATM 172
>gi|423316688|ref|ZP_17294593.1| hypothetical protein HMPREF9699_01164 [Bergeyella zoohelcum ATCC
43767]
gi|405583029|gb|EKB57000.1| hypothetical protein HMPREF9699_01164 [Bergeyella zoohelcum ATCC
43767]
Length = 550
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-L 342
+ + +++ G++I QI LR +P+ +V TP R++ L+ KA+D S +S LV+D D L
Sbjct: 101 VKSTAVYGGSSITDQIRSLRE-KPQIIVGTPGRVIDLIKRKALDFSEISWLVLDEADEML 159
Query: 343 SKG--DTLSLIRQSISGKPHTVVFNDCL 368
S G D L I T++F+ +
Sbjct: 160 SMGFKDDLETILSETPETKQTLLFSATM 187
>gi|395238726|ref|ZP_10416635.1| RNA helicase DeaD [Lactobacillus gigeriorum CRBIP 24.85]
gi|394477247|emb|CCI86612.1| RNA helicase DeaD [Lactobacillus gigeriorum CRBIP 24.85]
Length = 493
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 72/172 (41%), Gaps = 21/172 (12%)
Query: 218 KDILETSGSSSTIVQIAWI-VATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS-- 274
K I + +T +Q I +A A + + + G T F L ++ EK AK
Sbjct: 14 KAIKRSGFEEATPIQAETIPLALAGKDVIGQAQTGTGKTAAFGLPILQQLEKHAKAIQAI 73
Query: 275 VCKPLKAFGI---------------HTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLK 319
V +P + I H ++ GA I QI L+ P LV TP RLL
Sbjct: 74 VVEPTRELAIQTQEELFRLGRDEHAHVQVVYGGADIGRQIKSLKHTTPAILVGTPGRLLD 133
Query: 320 LVSLKAIDVSGVSLLVVDRLDS-LSKG--DTLSLIRQSISGKPHTVVFNDCL 368
+ K ID+S V +V+D D L G + I + + HT++F+ +
Sbjct: 134 HLKRKTIDLSQVRTVVLDEADEMLDMGFIQDIESIFEYAKNRQHTLLFSATM 185
>gi|424841333|ref|ZP_18265958.1| DNA/RNA helicase, superfamily II [Saprospira grandis DSM 2844]
gi|395319531|gb|EJF52452.1| DNA/RNA helicase, superfamily II [Saprospira grandis DSM 2844]
Length = 497
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 273 RSVCKPLKAFG-----IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
+ + K L FG ++ ++++ GA I Q+ LRS +++TP RL+ L+ A+D
Sbjct: 85 QQIAKQLALFGKYQQRVNMLAVYGGAPIVKQLKALRSETQHIIIATPGRLIDLLKRGAVD 144
Query: 328 VSGVSLLVVDRLDSL 342
+ G+ LV+D D +
Sbjct: 145 LRGLRYLVLDEADEM 159
>gi|154332507|ref|XP_001562070.1| putative ATP-dependent DEAD/H RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134059518|emb|CAM37096.1| putative ATP-dependent DEAD/H RNA helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 868
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 23/153 (15%)
Query: 200 PLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGP 257
P V S G S +D+L T +GS T+ ++ AD R EK GP
Sbjct: 254 PFAVQSLG---SPALMSGRDLLLTAKTGSGKTLCYALPLLRHCADQ-PRCEKG----EGP 305
Query: 258 FLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAA----IDHQITGLRSCEPEFLVS 312
L LV +QE A +V ++ L +A G+ V+ + + I H TG CE +V+
Sbjct: 306 IGLVLVPTQELAVQVFTLLNELGEAAGLRCVASYGSTSLAENIRHAKTG---CE--MMVA 360
Query: 313 TPERLLKLVSL---KAIDVSGVSLLVVDRLDSL 342
TP RLL L+++ KA+ +S VS ++VD D L
Sbjct: 361 TPGRLLDLLTVNGGKAMSLSRVSFVIVDEADRL 393
>gi|343517883|ref|ZP_08754879.1| cold-shock DEAD-box protein A [Haemophilus pittmaniae HK 85]
gi|343394734|gb|EGV07281.1| cold-shock DEAD-box protein A [Haemophilus pittmaniae HK 85]
Length = 604
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
P +L + ++E A +V C+ + GI+ V+L+ G D Q+ LR + +V TP
Sbjct: 74 PQMLVMAPTRELAIQVADACEQFMKYAQGINIVTLYGGQRYDIQLRALRQGA-QVVVGTP 132
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
R+L + +D+SG+ +V+D D +
Sbjct: 133 GRILDHLRRGTLDLSGLKAIVLDEADEM 160
>gi|335030730|ref|ZP_08524212.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus anginosus
SK52 = DSM 20563]
gi|333771191|gb|EGL48148.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus anginosus
SK52 = DSM 20563]
Length = 565
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 29/151 (19%)
Query: 221 LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK 280
LE + + IVQ A ++A + + ++E F F + K KVRSV
Sbjct: 107 LEKINTENPIVQ-ALVIAPTRELAVQSQEELFRF----------GRSKGVKVRSV----- 150
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340
+ G++I+ QI LRS +V TP RLL L+ KA+ ++ V L++D D
Sbjct: 151 ---------YGGSSIEKQIKALRSG-AHIVVGTPGRLLDLIKRKALKLNHVETLILDEAD 200
Query: 341 SLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+ L I IS P T++F+ +
Sbjct: 201 EMLNMGFLEDIEAIISRVPEERQTLLFSATM 231
>gi|149181221|ref|ZP_01859720.1| ATP-dependent RNA helicase (D-E-A-D box family) protein [Bacillus
sp. SG-1]
gi|148851120|gb|EDL65271.1| ATP-dependent RNA helicase (D-E-A-D box family) protein [Bacillus
sp. SG-1]
Length = 373
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 4/143 (2%)
Query: 260 LFLVSSQEKAAKV-RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L S E ++ + V K K GI++++L GA + +QI L+ +P+ ++ T R++
Sbjct: 72 LILAPSHELVMQIHQEVQKWGKDSGINSIALIGGANVKNQIEKLKK-KPKIVIGTTGRIM 130
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI--SGKPHTVVFNDCLTYTSVPAV 376
+L+ +K + + V +VVD D + + ++ +RQ I + ++F S V
Sbjct: 131 ELIKMKKLKMHEVKTIVVDEFDLMIGNEHINNVRQVIKSTMADRQLLFFSATLSDSTDKV 190
Query: 377 QNLLLGSINRLSLNQSVASQSAC 399
+ L+ + +NQ V S S
Sbjct: 191 ASELMEDYEVIRVNQGVVSSSQV 213
>gi|387907207|ref|YP_006337543.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blaberus
giganteus)]
gi|387582100|gb|AFJ90878.1| ATP-dependent RNA helicase [Blattabacterium sp. (Blaberus
giganteus)]
Length = 547
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 20/192 (10%)
Query: 184 NAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADS 243
++I A+ + G + P + I F SS KDI+ + + + TAA
Sbjct: 12 DSIIQAIEYIGFKYPTP--IQEKVIPF--LLSSEKDIIALAQTGTG--------KTAAFG 59
Query: 244 IARKEKEGFSFTGPFLLFLVSSQEKAAKV-RSVCK--PLKAFGIHTVSLHPGAAIDHQIT 300
+ +K F + P L L ++E ++ R C+ +F I VSL+ GA I QI
Sbjct: 60 LPIIQKMNFESSLPQALILCPTRELCIQITRDFCRFSKFSSF-IRIVSLYGGANIHSQIK 118
Query: 301 GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--DTLSLIRQSISG 357
L++ + +V TP R++ L+ K + + V LV+D D L+ G D L I + +
Sbjct: 119 SLKN-KTHIIVGTPGRIIDLIKRKKLYFNEVQYLVLDEADEMLNMGFKDELDYIIEKLPK 177
Query: 358 KPHTVVFNDCLT 369
K +++F+ ++
Sbjct: 178 KKQSLLFSATMS 189
>gi|440463671|gb|ELQ33225.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Magnaporthe
oryzae Y34]
gi|440481910|gb|ELQ62446.1| pre-mRNA-processing ATP-dependent RNA helicase prp-5 [Magnaporthe
oryzae P131]
Length = 1230
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 97/212 (45%), Gaps = 18/212 (8%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L L ++E A ++ CKP LK G+ V + G I QI L+ E +V+T
Sbjct: 669 GPIGLILTPTRELAVQIFRDCKPFLKTLGLRAVCAYGGPPIKDQIADLKRGA-EIVVATT 727
Query: 315 ERLLKLVSL---KAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ + + + + +V+D D + G +++ + +P TV+F+
Sbjct: 728 GRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANVRPDRQTVLFS--- 784
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHAYG 426
++P + + L+ + + + V +S A I + ++ K + +++L Y
Sbjct: 785 --ATMPKIMDALVKKVLKNPVEIEVGGKSVVASEITQIVEIRDEKSKFNRLLELLGELYK 842
Query: 427 DHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
D + ++ L V + K L+ L KGY
Sbjct: 843 DD---DDVRSLIFVERQEKADELLRELLRKGY 871
>gi|307708562|ref|ZP_07645027.1| dead rna helicase [Streptococcus mitis NCTC 12261]
gi|307615478|gb|EFN94686.1| dead rna helicase [Streptococcus mitis NCTC 12261]
Length = 360
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A + T G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAICLTTQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|254671737|emb|CBA09550.1| putative ATP-dependent RNA helicase [Neisseria meningitidis
alpha153]
Length = 399
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 93/199 (46%), Gaps = 24/199 (12%)
Query: 177 KFLILCLNA-IENAMRHDGVEQDNPLFVNSW--GIEFWKCYSSAKDILETSGSSSTIVQI 233
KF L L+ I +A+ +G E P+ + +E +SA+ +GS T
Sbjct: 4 KFADLNLDKNILSAVSSEGYESPTPIQAQAIPSALEGRDIMASAQ-----TGSGKTA--- 55
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR----SVCKPLKAFGIHTVSL 289
A+++ T R EK G GP L L ++E AA+V + K ++ F TVS+
Sbjct: 56 AFLLPTLQKLTKRSEKPG---KGPRALVLTPTRELAAQVEKNALAYAKNMRWF--RTVSI 110
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--D 346
GA+ +Q L S + +V+TP RL+ L+ +D + +L++D D L G D
Sbjct: 111 VGGASFGYQTRAL-SKPVDLIVATPGRLMDLMQSGKVDFERLEVLILDEADRMLDMGFID 169
Query: 347 TLSLIRQSISGKPHTVVFN 365
+ I ++ T++F+
Sbjct: 170 DIETIVEATPSDRQTLLFS 188
>gi|284034767|ref|YP_003384698.1| DEAD/DEAH box helicase domain-containing protein [Kribbella flavida
DSM 17836]
gi|283814060|gb|ADB35899.1| DEAD/DEAH box helicase domain protein [Kribbella flavida DSM 17836]
Length = 554
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 9/149 (6%)
Query: 216 SAKDILET--SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
+ KD+L +GS T + ++A A S R+ P L L ++E A +++
Sbjct: 101 AGKDVLGRGRTGSGKTYAFVLPLIARLATSGTRRRPNQ-----PRALILAPTRELATQIQ 155
Query: 274 SVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332
+ PL AFG+ T+++ G QITGLR + +V+ P RL V + V
Sbjct: 156 ASISPLTDAFGLRTMTVFGGVGHGPQITGLRKGV-DIVVACPGRLEDHVKAGHAKLDAVE 214
Query: 333 LLVVDRLDSLSKGDTLSLIRQSISGKPHT 361
+ V+D D ++ L +R+ + P T
Sbjct: 215 ITVLDEADHMADLGFLPAVRRLLEATPAT 243
>gi|389857075|ref|YP_006359318.1| superfamily II DNA/RNA helicase [Streptococcus suis ST1]
gi|353740793|gb|AER21800.1| superfamily II DNA/RNA helicase [Streptococcus suis ST1]
Length = 514
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS- 341
G+ S++ G++I+ QI LRS +V TP RLL L+ KA+ + GV L++D D
Sbjct: 97 GVKVRSVYGGSSIEKQIKALRSG-AHIVVGTPGRLLDLIKRKALKLDGVETLILDEADEM 155
Query: 342 LSKG--DTLSLIRQSISGKPHTVVFNDCL 368
L+ G D + I + + T++F+ +
Sbjct: 156 LNMGFLDDIEAIIERVPESRQTLLFSATM 184
>gi|319944884|ref|ZP_08019146.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
gi|319741454|gb|EFV93879.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
Length = 489
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A+V K + I +V + G +I+ QI LR + LV+TP
Sbjct: 88 PRCLILTPTRELTAQVEESVKAYAKYTRIRSVLIFGGVSINPQIQALRQPV-DILVATPG 146
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
RLL V +D+SGV + V+D D + + IR+ I+ P
Sbjct: 147 RLLDHVQQGTVDLSGVEIFVLDEADRMLDMGFIHDIRRVIAKLP 190
>gi|355574825|ref|ZP_09044461.1| hypothetical protein HMPREF1008_00438 [Olsenella sp. oral taxon 809
str. F0356]
gi|354818301|gb|EHF02793.1| hypothetical protein HMPREF1008_00438 [Olsenella sp. oral taxon 809
str. F0356]
Length = 568
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGL-RSCEPEFLVST 313
GPF L + ++E AA++ V + + G TV + GA + QI L R C+ LV+T
Sbjct: 220 GPFALVVTPTRELAAQIEDVVSVVCRKTGQKTVVVMGGAKFERQIRELERGCD--LLVAT 277
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
P RL+ L+ + + ++ V +LV+D D +
Sbjct: 278 PGRLIDLMEHEHVSLADVKVLVLDEADRM 306
>gi|445381685|ref|ZP_21427119.1| ATP-dependent RNA helicase, dead/deah box family protein
[Streptococcus thermophilus MTCC 5460]
gi|445394588|ref|ZP_21428854.1| ATP-dependent RNA helicase, dead/deah box family protein
[Streptococcus thermophilus MTCC 5461]
gi|444748875|gb|ELW73823.1| ATP-dependent RNA helicase, dead/deah box family protein
[Streptococcus thermophilus MTCC 5461]
gi|444748978|gb|ELW73920.1| ATP-dependent RNA helicase, dead/deah box family protein
[Streptococcus thermophilus MTCC 5460]
Length = 522
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
G+ S++ G++ID QI LRS +V TP RLL L+ KA+ ++ + L++D D +
Sbjct: 97 GVKVRSVYGGSSIDKQIKALRSGA-HIVVGTPGRLLDLIKRKALKLNNIETLILDEADEM 155
Query: 343 SKGDTLSLIRQSISGKP---HTVVFNDCL 368
L I IS P T++F+ +
Sbjct: 156 LNMGFLEDIEAIISRVPEERQTLLFSATM 184
>gi|146319228|ref|YP_001198940.1| superfamily II DNA/RNA helicase [Streptococcus suis 05ZYH33]
gi|146321430|ref|YP_001201141.1| superfamily II DNA/RNA helicase [Streptococcus suis 98HAH33]
gi|253752268|ref|YP_003025409.1| DEAD box helicase family protein [Streptococcus suis SC84]
gi|253754094|ref|YP_003027235.1| DEAD box helicase family protein [Streptococcus suis P1/7]
gi|253756028|ref|YP_003029168.1| DEAD/DEAH box helicase [Streptococcus suis BM407]
gi|386580466|ref|YP_006076871.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
gi|386582541|ref|YP_006078945.1| superfamily II DNA/RNA helicase [Streptococcus suis SS12]
gi|386588666|ref|YP_006085067.1| superfamily II DNA/RNA helicase [Streptococcus suis A7]
gi|403062015|ref|YP_006650231.1| superfamily II DNA/RNA helicase [Streptococcus suis S735]
gi|145690034|gb|ABP90540.1| Superfamily II DNA and RNA helicase [Streptococcus suis 05ZYH33]
gi|145692236|gb|ABP92741.1| Superfamily II DNA and RNA helicase [Streptococcus suis 98HAH33]
gi|251816557|emb|CAZ52193.1| DEAD box helicase family protein [Streptococcus suis SC84]
gi|251818492|emb|CAZ56321.1| DEAD box helicase family protein [Streptococcus suis BM407]
gi|251820340|emb|CAR46890.1| DEAD box helicase family protein [Streptococcus suis P1/7]
gi|319758658|gb|ADV70600.1| superfamily II DNA/RNA helicase [Streptococcus suis JS14]
gi|353734687|gb|AER15697.1| superfamily II DNA/RNA helicase [Streptococcus suis SS12]
gi|354985827|gb|AER44725.1| superfamily II DNA/RNA helicase [Streptococcus suis A7]
gi|402809341|gb|AFR00833.1| superfamily II DNA/RNA helicase [Streptococcus suis S735]
Length = 514
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS- 341
G+ S++ G++I+ QI LRS +V TP RLL L+ KA+ + GV L++D D
Sbjct: 97 GVKVRSVYGGSSIEKQIKALRSGA-HIVVGTPGRLLDLIKRKALKLDGVETLILDEADEM 155
Query: 342 LSKG--DTLSLIRQSISGKPHTVVFNDCL 368
L+ G D + I + + T++F+ +
Sbjct: 156 LNMGFLDDIEAIIERVPESRQTLLFSATM 184
>gi|417850191|ref|ZP_12496105.1| DEAD/DEAH box helicase [Streptococcus mitis SK1080]
gi|339455034|gb|EGP67645.1| DEAD/DEAH box helicase [Streptococcus mitis SK1080]
Length = 360
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V ++D D L + + + P H +++ T
Sbjct: 127 FELIKLKKIKMMNVETTILDEFDQLLDDSQIHFVEKITHYAPRDHQLIYMSATT 180
>gi|423231424|ref|ZP_17217827.1| hypothetical protein HMPREF1063_03647 [Bacteroides dorei
CL02T00C15]
gi|423246011|ref|ZP_17227084.1| hypothetical protein HMPREF1064_03290 [Bacteroides dorei
CL02T12C06]
gi|392628310|gb|EIY22343.1| hypothetical protein HMPREF1063_03647 [Bacteroides dorei
CL02T00C15]
gi|392637358|gb|EIY31231.1| hypothetical protein HMPREF1064_03290 [Bacteroides dorei
CL02T12C06]
Length = 437
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 26/161 (16%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDI--LETSGSSSTIVQIAWIVATAADS 243
IEN + + +E+ NP+ I+ WK KD+ L +GS T+ + +V +
Sbjct: 2 IENILANLKIERLNPM--QEASIDAWK---KGKDLILLSPTGSGKTLAYLLPLVQSLKPG 56
Query: 244 IARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK----PLKAFGIHTVSLHPGAAIDHQI 299
I TG + LV S+E A ++ V K P KA VS + G +
Sbjct: 57 I----------TGVQAIVLVPSRELALQIDQVFKSMNTPFKA-----VSCYGGRPAMEEH 101
Query: 300 TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340
++ +P ++ TP R+ +S + D VS+L++D D
Sbjct: 102 RTIKGVQPSVIIGTPGRMNDHLSKQNFDADTVSILIIDEFD 142
>gi|145491061|ref|XP_001431530.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398635|emb|CAK64132.1| unnamed protein product [Paramecium tetraurelia]
Length = 532
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 20/197 (10%)
Query: 224 SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS-VCKPLKAF 282
+GS TI A+++ I + K+G GP +L LV ++E A +++ + +A+
Sbjct: 117 TGSGKTI---AYLLPGLV-HIESQRKKG----GPMMLILVPTRELAMQIQEHISYFSEAY 168
Query: 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
+++ ++ GA Q L + +P+ +V+TP RL+ + + ++ V+ LV+D D +
Sbjct: 169 NMNSACIYGGADKRPQEMAL-ARDPDIVVATPGRLIDFLDAQVTNLHNVTYLVLDEADRM 227
Query: 343 SKGDTLSLIRQ---SISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSAC 399
+R+ I TV F+ T VQNL + +N + SQ
Sbjct: 228 LDMGFEQQVRKIDSYIREDRQTVFFSATWPKT----VQNLACDLCHNEPINLYIGSQEVT 283
Query: 400 I---IQSVNVCASDEEK 413
I I +C EK
Sbjct: 284 INKNITQETICLYQNEK 300
>gi|149910407|ref|ZP_01899049.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
gi|149806555|gb|EDM66524.1| ATP-dependent RNA helicase, DEAD box family [Moritella sp. PE36]
Length = 460
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 16/128 (12%)
Query: 281 AFGIHTVSLHPGAAIDHQI---TGLRSCE---------PEFLVSTPERLLKLVSLKAIDV 328
A +H H G ++D+QI G S + PE L++TP RLL + K+I +
Sbjct: 86 AIQVHANMKHLGMSLDYQIQLIIGRESFQHQEKLLRKNPEVLIATPGRLLDHIREKSISL 145
Query: 329 SGVSLLVVDRLDS-LSKG--DTLSLIRQSISG-KPHTVVFNDCLTYTSVPAVQNLLLGSI 384
+ LV+D D L G D +S I S K T++F+ L + V + N +L +
Sbjct: 146 EHLEFLVLDEADRMLDMGFRDDVSAISNSAPNVKRQTMLFSATLEHVDVANICNQVLRAP 205
Query: 385 NRLSLNQS 392
R+ +N+S
Sbjct: 206 ERIEINRS 213
>gi|409385627|ref|ZP_11238197.1| ATP-dependent RNA helicase YfmL [Lactococcus raffinolactis 4877]
gi|399206991|emb|CCK19112.1| ATP-dependent RNA helicase YfmL [Lactococcus raffinolactis 4877]
Length = 364
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 256 GPFLLFLVSSQEKAAK----VRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLV 311
G LL L + E A + V+S+ +PL +S GA+I QI ++ PE +V
Sbjct: 66 GQQLLILAPNSELAGQIFEVVKSLAEPLSLTANLVIS---GASIKRQIERIKKG-PEIIV 121
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVF 364
+TP R L+LV K I ++ ++ +++D +D+L + ++ I+ P F
Sbjct: 122 ATPGRALELVKDKKIKMTAINTIILDEVDNLLEDSQWKFVKPIITRTPKDYQF 174
>gi|300312721|ref|YP_003776813.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1]
gi|300075506|gb|ADJ64905.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae
SmR1]
Length = 510
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 6/131 (4%)
Query: 243 SIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQIT 300
S AR E+ + P +L L ++E A +V + A+ + VS+ G Q+
Sbjct: 83 SRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYGAYMRRVRVVSILGGMPYPKQMQ 142
Query: 301 GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP- 359
L S PE LV+TP RL+ + ID S + +LV+D D + + I + ++ P
Sbjct: 143 -LLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEADRMLDMGFIDDIEKIVAATPA 201
Query: 360 --HTVVFNDCL 368
T++F+ L
Sbjct: 202 TRQTMLFSATL 212
>gi|451822522|ref|YP_007458723.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451788501|gb|AGF59469.1| DEAD-box ATP-dependent RNA helicase CshA [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 525
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L ++E A +V + L + +S++ G +ID QI LR + +V TP R+L
Sbjct: 75 LVLAPTRELAVQVNEEIQRLSKYEKTEVLSVYGGDSIDRQIRALRKGTVDIVVGTPGRML 134
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
L+ K + + + LV+D D + + I + +S P T++F+ +
Sbjct: 135 DLIKRKCLHLDSIEFLVLDEADEMLNMGFIDDIEEILSHTPTERQTLLFSATM 187
>gi|418966485|ref|ZP_13518220.1| DEAD/DEAH box helicase [Streptococcus mitis SK616]
gi|383347290|gb|EID25280.1| DEAD/DEAH box helicase [Streptococcus mitis SK616]
Length = 360
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWSEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V + +D D L + + + P H +++ T
Sbjct: 127 FELIKLKKIKMMNVETITLDEFDQLLDDSQIHFVEKITHYAPRDHQLIYMSATT 180
>gi|452989114|gb|EME88869.1| hypothetical protein MYCFIDRAFT_114276, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 1111
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP + + ++E A ++ CKP LKA G+ V + GA I QI L+ E +V TP
Sbjct: 547 GPVGIIMAPTRELAVQIHRECKPYLKALGLRGVCAYGGAPIKDQIAELKRGA-EVVVCTP 605
Query: 315 ERLLKLVSL---KAIDVSGVSLLVVDRLDSL 342
R++ L++ + ++ V+ +V+D D +
Sbjct: 606 GRMIDLLAANQGRVTNLRRVTYVVMDEADRM 636
>gi|85058891|ref|YP_454593.1| ATP-dependent RNA helicase RhlE [Sodalis glossinidius str.
'morsitans']
gi|84779411|dbj|BAE74188.1| putative ATP-dependent RNA helicase [Sodalis glossinidius str.
'morsitans']
Length = 453
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 260 LFLVSSQEKAAKV-RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L ++E AA++ ++ + G+ ++ + G +I+ Q+ LR E LV+TP RLL
Sbjct: 80 LILTPTRELAAQIGENITEYSAHLGLRSLVVFGGVSINPQMMKLRGGV-EVLVATPGRLL 138
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL 342
L +A+D+S V +LV+D D +
Sbjct: 139 DLAQQRAVDLSQVEILVLDEADRM 162
>gi|347971748|ref|XP_001688456.2| AGAP004351-PA [Anopheles gambiae str. PEST]
gi|333469011|gb|EDO64138.2| AGAP004351-PA [Anopheles gambiae str. PEST]
Length = 713
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
GP +L L ++E A ++ + GI V L+ G QI +R+ E L++TP
Sbjct: 380 GPNVLVLAPTRELALQIEKEVAKYQFRGIKAVCLYGGGDRRAQINVVRNG-VEILIATPG 438
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RL LV +DVS ++ L++D D +
Sbjct: 439 RLNDLVQEGVVDVSTITYLILDEADRM 465
>gi|242041163|ref|XP_002467976.1| hypothetical protein SORBIDRAFT_01g037410 [Sorghum bicolor]
gi|241921830|gb|EER94974.1| hypothetical protein SORBIDRAFT_01g037410 [Sorghum bicolor]
Length = 766
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 114/255 (44%), Gaps = 24/255 (9%)
Query: 216 SAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
S +DI+ +GS T + ++ D +++EG P + ++E A ++
Sbjct: 255 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEG-----PIGVICAPTRELAHQIY 309
Query: 274 SVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVSTPERLLKLVSLKAIDVSGV 331
K K + + +++ G + Q L++ CE +++TP RL+ L+ +KA+ +
Sbjct: 310 LEAKKFAKPYNLRVAAVYGGVSKFDQFKELKAGCE--VVIATPGRLIDLLKMKALKMFRA 367
Query: 332 SLLVVDRLDSLSKGDTLSLIRQSISG--KP--HTVVFNDCLTYTSVPAVQNLLLGSINRL 387
+ LV+D D + IR SI G +P T++F+ + Y + +L I R+
Sbjct: 368 TYLVLDEADRMFDLGFEPQIR-SIVGQIRPDRQTLLFSATMPYKVERLAREILTDPI-RV 425
Query: 388 SLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQ 447
++ Q V + I Q VNV SD EK+ ++ L D VL K ++
Sbjct: 426 TVGQ-VGGANEDIKQVVNVLPSDVEKMPWLLEKLPGMIDDG------DVLVFASKKARVD 478
Query: 448 NLVSTLKCKGYSIST 462
+ L +G+ I+
Sbjct: 479 EIEKELNQRGFRIAA 493
>gi|147821303|emb|CAN74586.1| hypothetical protein VITISV_041989 [Vitis vinifera]
Length = 771
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 107/235 (45%), Gaps = 23/235 (9%)
Query: 188 NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIA 245
NA+ G E+ P+ ++ I S +DI+ +GS T + ++ D
Sbjct: 239 NAITKQGYEKPTPIQCQAFPIVL-----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE 293
Query: 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS 304
++EG P + ++E A ++ K K +GI +++ G + Q L+S
Sbjct: 294 LAKEEG-----PIGVICAPTRELAHQIYLESKKFAKPYGIRVSAIYGGMSKLEQFKELKS 348
Query: 305 -CEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG--KP-- 359
CE +++TP RL+ ++ +KA+ + + LV+D D + IR SI G +P
Sbjct: 349 GCE--IVIATPGRLIDMIKMKALTMLRATYLVLDEADRMFDLGFEPQIR-SIVGQIRPDR 405
Query: 360 HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKI 414
T++F+ + + +L + R+++ + V + I Q V V SD EK+
Sbjct: 406 QTLLFSATMPRKVEKLAREILTDPV-RVTVGE-VGMANEDITQVVQVIPSDAEKL 458
>gi|254506018|ref|ZP_05118163.1| ATP-dependent rna helicase, dead box family [Vibrio
parahaemolyticus 16]
gi|219551241|gb|EED28221.1| ATP-dependent rna helicase, dead box family [Vibrio
parahaemolyticus 16]
Length = 454
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 25/239 (10%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYS----------SAKDILETS--GSSSTIVQI 233
+EN + + DN L N ++F K + KD+L +S GS T+
Sbjct: 8 MENTLHFKDLGLDNRLLKNLKHLDFKKATEIQQKAIPVAIAGKDLLASSKTGSGKTL--- 64
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293
A+++ S+ K FS P + L ++E A +V + + A + +L G
Sbjct: 65 AFVLPMLHKSLKSK---AFSAKDPRAVILAPTRELAKQVYGELRTMLAGLSYDATLIVGG 121
Query: 294 A-IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR 352
+ Q+ LR P+F+V+TP RL + +++ + G+ LV+D D + +R
Sbjct: 122 ENFNDQVKALRKY-PKFIVATPGRLADHLEHRSLFLEGLETLVLDEADRMLDLGFAPELR 180
Query: 353 QSISGKPH----TVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC 407
+ + H T++F+ L + V + +L + R+++ S + I Q +C
Sbjct: 181 RIHNAAKHRRRQTLMFSATLDHAEVNDIAFEMLNAPKRIAVGVS-NEEHKDITQKFYLC 238
>gi|209809352|ref|YP_002264890.1| putative ATP-dependent RNA helicase RhlE [Aliivibrio salmonicida
LFI1238]
gi|208010914|emb|CAQ81319.1| putative ATP-dependent RNA helicase RhlE [Aliivibrio salmonicida
LFI1238]
Length = 442
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A + V +K++ +H TV++ G + + Q+ LR + LV+T
Sbjct: 102 LILVPTRELA---KQVADSIKSYAVHFNGAIKTVAVFGGVSANTQMLALRGGT-DILVAT 157
Query: 314 PERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTY 370
P RLL L+S AI + V LV+ DR+ SL + LS + + + T++F+
Sbjct: 158 PGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELSALLDLLPKQKQTLLFSATFPE 217
Query: 371 TSVPAVQNLL 380
Q LL
Sbjct: 218 QVQTLTQELL 227
>gi|225437591|ref|XP_002277419.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 24 [Vitis vinifera]
gi|297743992|emb|CBI36962.3| unnamed protein product [Vitis vinifera]
Length = 771
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 107/235 (45%), Gaps = 23/235 (9%)
Query: 188 NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIA 245
NA+ G E+ P+ ++ I S +DI+ +GS T + ++ D
Sbjct: 239 NAITKQGYEKPTPIQCQAFPIVL-----SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPE 293
Query: 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS 304
++EG P + ++E A ++ K K +GI +++ G + Q L+S
Sbjct: 294 LAKEEG-----PIGVICAPTRELAHQIYLESKKFAKPYGIRVSAIYGGMSKLEQFKELKS 348
Query: 305 -CEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG--KP-- 359
CE +++TP RL+ ++ +KA+ + + LV+D D + IR SI G +P
Sbjct: 349 GCE--IVIATPGRLIDMIKMKALTMLRATYLVLDEADRMFDLGFEPQIR-SIVGQIRPDR 405
Query: 360 HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKI 414
T++F+ + + +L + R+++ + V + I Q V V SD EK+
Sbjct: 406 QTLLFSATMPRKVEKLAREILTDPV-RVTVGE-VGMANEDITQVVQVIPSDAEKL 458
>gi|441502792|ref|ZP_20984799.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
gi|441429008|gb|ELR66463.1| ATP-dependent RNA helicase [Photobacterium sp. AK15]
Length = 416
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 14/155 (9%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A++V +K++ H TV++ G +++ Q+ LR + +V+T
Sbjct: 87 LILVPTRELASQV---AYNIKSYSYHLRDKIKTVAVFGGVSVNPQMLALRGGS-DVIVAT 142
Query: 314 PERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTY 370
P RLL LVS AI + V LV+ DR+ SL D L+ I + K T++F+
Sbjct: 143 PGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTDELNKILALLPEKKQTLLFSATFPE 202
Query: 371 TSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVN 405
++LL + + L + AS + SVN
Sbjct: 203 KVTSLAKDLLHDPVE-VQLQSAEASTLVQRVFSVN 236
>gi|402078084|gb|EJT73433.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 1218
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 96/212 (45%), Gaps = 18/212 (8%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L L ++E A ++ CKP LKA G+ V + G I QI L+ E +V+T
Sbjct: 662 GPIGLILTPTRELAVQIFRDCKPFLKALGLRAVCAYGGPPIKDQIADLKRGA-EIVVATT 720
Query: 315 ERLLKLVSL---KAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ + + + + +V+D D + G + + + +P TV+F+
Sbjct: 721 GRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDMGFEPQVTKILGNARPDLQTVLFS--- 777
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKIL--KGIQVLDHAYG 426
++P + + L+ + + + V +S + + EEK + +++L Y
Sbjct: 778 --ATMPKIMDALVKKVLKNPVEIEVGGKSVVASEITQIVEIREEKTKFNRLLELLGALYV 835
Query: 427 DHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
D + ++ L V + K L+ L KG+
Sbjct: 836 D---DDDVRALVFVERQEKADELLRELLHKGW 864
>gi|288921374|ref|ZP_06415654.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
gi|288347226|gb|EFC81523.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
Length = 569
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 257 PFLLFLVSSQEKAAKVRS-VCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L +V ++E +V + + + G+ +S++ G A + Q++ LRS + +V TP
Sbjct: 73 PQALVVVPTRELCVQVTADIARAGLGRGLRVLSVYGGRAYEPQLSALRSGV-DIVVGTPG 131
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
RLL L KA+D++ V LV+D D + L + + I+ P HT++F+ +
Sbjct: 132 RLLDLARQKALDLARVRTLVLDEADEMLDLGFLPDVERIIAFLPEQRHTMLFSATM 187
>gi|238853039|ref|ZP_04643432.1| superfamily II DNA and RNA helicase [Lactobacillus gasseri 202-4]
gi|238834337|gb|EEQ26581.1| superfamily II DNA and RNA helicase [Lactobacillus gasseri 202-4]
Length = 411
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKL 320
L + E A + R+ P KA G+ TV+L Q+ L+ +PE +++TP R
Sbjct: 67 LEPTTELAIQTRNNLLPYAKALGLKTVALVGAGNRKRQLERLKKEKPEIIIATPGRFFDF 126
Query: 321 VSLKAIDVSGVSLLVVDRLDSL---SKGDTLSLIRQSISGKPHTVVF 364
+S I ++ LV+D D + +K D LS + Q++S ++F
Sbjct: 127 LSENRIKYQDINALVIDEADDILEFAKLDLLSSLGQNLSSTAQILLF 173
>gi|334128555|ref|ZP_08502443.1| ATP-dependent RNA helicase DeaD [Centipeda periodontii DSM 2778]
gi|333387232|gb|EGK58435.1| ATP-dependent RNA helicase DeaD [Centipeda periodontii DSM 2778]
Length = 423
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L + ++E A ++ V +PL A GI T+ ++ GA I+ Q LR P+ ++ TP RLL
Sbjct: 74 LVIAPTRELAIQIARVAEPLGAELGIGTIVIYGGADIERQKEKLRR-RPQLIIGTPGRLL 132
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSK 344
V + + V+ +V+D D + K
Sbjct: 133 DHVRRGTLALGSVNKIVLDEADEMLK 158
>gi|227538389|ref|ZP_03968438.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
33300]
gi|227241771|gb|EEI91786.1| ATP-dependent RNA helicase [Sphingobacterium spiritivorum ATCC
33300]
Length = 603
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFG-----IHTVSLHPGA 293
TAA + E+ FS P L L ++E ++ K L+ F +H V+++ GA
Sbjct: 54 TAAFGLPLLEQLDFSQKHPQALVLCPTRELCLQI---AKDLEKFAKYIDDVHVVAVYGGA 110
Query: 294 AIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
I Q+ +R + +V+TP R+L ++ AID S V +V+D D +
Sbjct: 111 NISDQLRQIRRG-VQIVVATPGRMLDIIGRNAIDFSNVKYVVLDEADEM 158
>gi|89093138|ref|ZP_01166088.1| ATP-dependent RNA helicase [Neptuniibacter caesariensis]
gi|89082434|gb|EAR61656.1| ATP-dependent RNA helicase [Neptuniibacter caesariensis]
Length = 417
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 15/116 (12%)
Query: 260 LFLVSSQEKAAKV-RSVCK-----PLKAFGIHTVSLHPGAAIDHQITGL-RSCEPEFLVS 312
L LV ++E A +V +SV + P K I +V+++ GAAI+ Q+ L + C+ +V+
Sbjct: 77 LVLVPTRELAVQVSQSVDRYSENCPRK---IRSVAIYGGAAINPQMQSLSKGCD--IVVA 131
Query: 313 TPERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFN 365
TP RLL L+ A+D+ G+ LV+ DR+ L D L I G T++F+
Sbjct: 132 TPGRLLDLMRKNALDLRGLKALVLDEADRMLDLGFADELDDILDQTPGNVQTLLFS 187
>gi|383784621|ref|YP_005469191.1| DEAD/DEAH box helicase [Leptospirillum ferrooxidans C2-3]
gi|383083534|dbj|BAM07061.1| putative DEAD/DEAH box helicase domain protein [Leptospirillum
ferrooxidans C2-3]
Length = 437
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 260 LFLVSSQEKAAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L ++E AA+V SV + K + + + G +I+ QI LR+ + LV+TP RLL
Sbjct: 81 LILTPTRELAAQVEESVVEYGKHMKLSSTVIFGGVSINPQIQKLRTGV-DILVATPGRLL 139
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHT 361
V + +D+S V +LV+D D + + IR+ IS P T
Sbjct: 140 DHVQQRTLDLSHVEILVLDEADRMLDMGFIRDIRKIISLLPKT 182
>gi|418214639|ref|ZP_12841373.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA54644]
gi|353869369|gb|EHE49250.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA54644]
Length = 292
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
+ L + E A ++ VCK +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 1 MILAPNTELAGQIFDVCKTWAEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRIF 59
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 60 ELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 112
>gi|255036621|ref|YP_003087242.1| DEAD/DEAH box helicase [Dyadobacter fermentans DSM 18053]
gi|254949377|gb|ACT94077.1| DEAD/DEAH box helicase domain protein [Dyadobacter fermentans DSM
18053]
Length = 385
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 11/89 (12%)
Query: 260 LFLVSSQEKAAKVRSVCK------PLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A ++ SV + P K + T+++ G +I+ Q+ L++ E LV+T
Sbjct: 82 LVLVPTRELAVQIGSVFQIFSERLPRK---VKTLAVFGGVSINPQMIALQNVE--ILVAT 136
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
P RLL+L+S KA+ ++ +LV+D D +
Sbjct: 137 PGRLLELLSYKALSLAETRILVLDEADKM 165
>gi|417952452|ref|ZP_12595511.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342819268|gb|EGU54114.1| ATP-dependent RNA helicase [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 447
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 101/239 (42%), Gaps = 25/239 (10%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYS----------SAKDILETS--GSSSTIVQI 233
+EN + + DN L N +F K + KD+L +S GS T+
Sbjct: 1 MENTLYFKDLGLDNRLLKNLKHFDFKKATEIQQKAIPVAIAGKDLLASSKTGSGKTL--- 57
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPG 292
A+++ S+ K FS P L L ++E A +V + L + G
Sbjct: 58 AFVLPMLHKSLKNK---AFSAKDPRALVLAPTRELAKQVYGELRSMLGGLSYDATLIVGG 114
Query: 293 AAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR 352
+ Q+ LR P+F+V+TP RL + +++ + G+ LV+D D + +R
Sbjct: 115 ENFNDQVKALRKY-PKFIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELR 173
Query: 353 QSISGKPH----TVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC 407
+ + H T++F+ L + V + +L + R+++ + + + I Q +C
Sbjct: 174 RIHNAAKHRRRQTLMFSATLDHAEVNDIAFEMLDAPKRIAVG-AASEEHKDITQKFYLC 231
>gi|417948779|ref|ZP_12591921.1| putative ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
gi|342809142|gb|EGU44266.1| putative ATP-dependent RNA helicase [Vibrio splendidus ATCC 33789]
Length = 448
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 13/115 (11%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRSCEPEFLVST 313
L +V ++E A + V +K++ +H TV + G +++ Q+ LR + LV+T
Sbjct: 108 LIVVPTRELA---KQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGT-DILVAT 163
Query: 314 PERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFN 365
P RLL L+S AI + V+ LV+ DR+ SL + L I + + K T++F+
Sbjct: 164 PGRLLDLISSNAIKLDKVNTLVLDEADRMLSLGFTEELGAILKLLPTKKQTLLFS 218
>gi|171778647|ref|ZP_02919743.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379704901|ref|YP_005203360.1| ATP-dependent RNA helicase [Streptococcus infantarius subsp.
infantarius CJ18]
gi|171282604|gb|EDT48028.1| DEAD/DEAH box helicase [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|374681600|gb|AEZ61889.1| ATP-dependent RNA helicase [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 533
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 29/151 (19%)
Query: 221 LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK 280
L+ +S +VQ A ++A + + ++E F F +EK KVRSV
Sbjct: 60 LDKIDTSRNLVQ-ALVIAPTRELAVQGQEELFRF----------GREKGVKVRSV----- 103
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340
+ G++I+ QI LRS +V TP RLL L+ KA+ + V L++D D
Sbjct: 104 ---------YGGSSIEKQIKALRSGA-HIVVGTPGRLLDLIKRKALKLEHVETLILDEAD 153
Query: 341 SLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+ L I IS P T++F+ +
Sbjct: 154 EMLNMGFLEDIEAIISRVPESRQTLLFSATM 184
>gi|427789303|gb|JAA60103.1| Putative atp-dependent rna helicase [Rhipicephalus pulchellus]
Length = 521
Score = 45.8 bits (107), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 114/273 (41%), Gaps = 28/273 (10%)
Query: 195 VEQDNPLFVNSWGIEFWKCYSSAKDI--LETSGSSSTIVQIAWIVATAADSIARKEKEGF 252
+ Q +P+ +W I S +D+ + +GS T+ A+++ A ++ G
Sbjct: 117 ITQPSPIQAQAWPIVM-----SGRDLVGIAQTGSGKTL---AYVLPAAIHMSHQQRPRG- 167
Query: 253 SFTGPFLLFLVSSQEKAAKVRSVCKPL--KAFGIHTVSLHPGAAIDHQITGLRSCEPEFL 310
GP + L ++E ++ V AFG+ ++ G + QI LR
Sbjct: 168 --EGPISVVLAPTRELVQQISQVAYEWCEGAFGLSGTPVYGGVSKGPQIERLRRGV-HMC 224
Query: 311 VSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KP--HTVVFNDC 367
V+TP RLL ++ A+++ + LV+D D + IR+ I +P TV+++
Sbjct: 225 VATPGRLLDILETGAVNLLRCTFLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTVMWSAT 284
Query: 368 LTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC--ASDEEKILKGIQVLDHAY 425
Q L+ ++++ + + I Q V+VC E K+L +Q
Sbjct: 285 WPAEVRSLAQEFLIPDHMQVTVGSTELCANHNIKQVVHVCDEFEKENKLLGILQ------ 338
Query: 426 GDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
D + L V + S +L+ L+ KG+
Sbjct: 339 -DIMEEGEQRTLIFVARKSSVVHLLQKLQSKGF 370
>gi|328781103|ref|XP_394925.4| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Apis
mellifera]
Length = 626
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 61/135 (45%), Gaps = 9/135 (6%)
Query: 211 WKCYSSAKDIL---ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQE 267
W S +D++ +T + + ++ I R E++G P +L + ++E
Sbjct: 245 WPILLSGRDLIGIAQTGTGKTLAFLLPALIHIEGQQIPRVERKG-----PNVLIMAPTRE 299
Query: 268 KAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
A ++ GI V L+ G + Q+ + E +++TP RL LV K ++
Sbjct: 300 LALQIEKEVNKYSYHGIKAVCLYGGGSRKKQVNVVTEG-VEIVIATPGRLNDLVEAKILN 358
Query: 328 VSGVSLLVVDRLDSL 342
+S ++ LV+D D +
Sbjct: 359 ISSITYLVLDEADRM 373
>gi|326531018|dbj|BAK04860.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531744|dbj|BAJ97876.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 415
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 99/207 (47%), Gaps = 18/207 (8%)
Query: 216 SAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
S +DI+ +GS T + ++ D +++EG P + ++E A ++
Sbjct: 76 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEG-----PIGVICAPTRELAHQIY 130
Query: 274 SVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVSTPERLLKLVSLKAIDVSGV 331
K K + + +++ G + Q L+S CE +V+TP RL+ L+ +KA+ +
Sbjct: 131 LEAKKFAKPYNLQVAAVYGGVSKFEQFKELKSGCE--IVVATPGRLIDLLKMKALRMFRA 188
Query: 332 SLLVVDRLDSLSKGDTLSLIRQSISG--KP--HTVVFNDCLTYTSVPAVQNLLLGSINRL 387
+ V+D D + IR SI G +P T++F+ + Y V + +L + R+
Sbjct: 189 TYSVLDEADRMFDLGFEPQIR-SIVGQIRPDRQTLLFSATMPY-KVERLAREILTDLIRV 246
Query: 388 SLNQSVASQSACIIQSVNVCASDEEKI 414
++ Q V S + I Q VNV SD EK+
Sbjct: 247 TVGQ-VGSANEDIKQVVNVLPSDAEKM 272
>gi|296423379|ref|XP_002841232.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637467|emb|CAZ85423.1| unnamed protein product [Tuber melanosporum]
Length = 590
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 98/206 (47%), Gaps = 13/206 (6%)
Query: 217 AKDILE--TSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS 274
KDIL +GS T A+++ + RKE FT L LV ++E A +V
Sbjct: 70 GKDILARAKTGSGKTA---AYLLPVLQAILKRKETSEERFTSA--LILVPTKELAQQVHK 124
Query: 275 VCKPLKAF-GIHTVSLHPGAAIDHQIT-GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332
V + L A+ G H S++ I ++ L S + + +VSTP R L +++ S ++
Sbjct: 125 VIESLAAYCGKHIRSINLAQNISEKVQQSLLSEKQDVVVSTPSRALVHINISESLTSQLT 184
Query: 333 LLVVDRLD-SLSKG--DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSL 389
LV+D D LS G + L + +++ T + + LT T V +++L + L L
Sbjct: 185 HLVIDEADLVLSYGYENDLQGVSKALPKGLQTFLMSATLT-TEVETLKSLFCRNPAILRL 243
Query: 390 NQSVASQSACIIQSVNVCASDEEKIL 415
+ V ++ + Q C+ DE+ +L
Sbjct: 244 EEDVDAEGEGLTQYCVKCSEDEKFLL 269
>gi|357059412|ref|ZP_09120254.1| hypothetical protein HMPREF9334_01971 [Selenomonas infelix ATCC
43532]
gi|355371489|gb|EHG18833.1| hypothetical protein HMPREF9334_01971 [Selenomonas infelix ATCC
43532]
Length = 423
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 252 FSFTGPFL------------LFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQ 298
F+F P L L + ++E A ++ V +PL A G+ T+ ++ GA I+ Q
Sbjct: 54 FAFLLPLLEKIKPQGEVAQALVIAPTRELAIQIARVAEPLGAELGVGTIVIYGGADIERQ 113
Query: 299 ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK 344
LR P+ ++ TP RLL V + + V+ +V+D D + K
Sbjct: 114 KEKLRR-HPQLIIGTPGRLLDHVRRGTLALGNVNKIVLDEADEMLK 158
>gi|325977801|ref|YP_004287517.1| DEAD/DEAH box helicase [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|386337311|ref|YP_006033480.1| ATP-dependent RNA helicase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|325177729|emb|CBZ47773.1| DEAD-box ATP-dependent RNA helicase [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|334279947|dbj|BAK27521.1| ATP-dependent RNA helicase [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
Length = 526
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 26/141 (18%)
Query: 221 LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK 280
L+ ++ +VQ A ++A + + ++E F F +EK KVRSV
Sbjct: 60 LDKIDTNRNLVQ-ALVIAPTRELAVQGQEELFRF----------GREKGVKVRSV----- 103
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340
+ G++I+ QI LRS +V TP RLL L+ KA+ + V L++D D
Sbjct: 104 ---------YGGSSIEKQIKALRSGA-HIVVGTPGRLLDLIKRKALKLDHVETLILDEAD 153
Query: 341 SLSKGDTLSLIRQSISGKPHT 361
+ L I IS P T
Sbjct: 154 EMLNMGFLEDIEAIISRVPET 174
>gi|27904825|ref|NP_777951.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|31340034|sp|Q89AF9.1|DEAD_BUCBP RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
Full=ATP-dependent RNA helicase DeaD homolog
gi|27904223|gb|AAO27056.1| ATP-dependent RNA helicase [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
Length = 602
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL--KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
P +L L ++E A +V K G+H ++L+ G D Q+ LR P+ +V TP
Sbjct: 75 PQILVLTPTRELAVQVAEAFSNFSKKLIGVHVLALYGGQRYDLQLKSLRKG-PQIIVGTP 133
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKG---DTLSLIRQSISGKPHTVVFNDCL 368
RLL + + + +S + LV+D D + + + + I I + T +F+ +
Sbjct: 134 GRLLDHLKRRTLSLSNLHSLVLDEADEMLRMGFIEDVETIMTEIPDRHQTALFSATM 190
>gi|71279831|ref|YP_267868.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
gi|71145571|gb|AAZ26044.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
psychrerythraea 34H]
Length = 466
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 96/215 (44%), Gaps = 11/215 (5%)
Query: 173 DCPSKFLILCLN-AIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIV 231
D P+KF L L+ A+ A+R G E +P+ + S +D++ + + +
Sbjct: 3 DTPTKFTDLGLSEALLKAVRDKGYETPSPIQAQAI-----PAVISGRDVMAAAQTGTG-- 55
Query: 232 QIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV-RSVCKPLKAFGIHTVSLH 290
+ A ++ + S L L ++E AA++ S+ K +H++ +
Sbjct: 56 KTAGFTLPLLQRLSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVF 115
Query: 291 PGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSL 350
G I+ QI LR + LV+TP RLL L + +A+ S + + ++D D + +
Sbjct: 116 GGVKINPQIARLRQGV-DVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRD 174
Query: 351 IRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSIN 385
I++ ++ P N + T P ++ L G +N
Sbjct: 175 IKKLMTALPKDRQ-NLLFSATFSPEIRALAKGMVN 208
>gi|377831887|ref|ZP_09814852.1| ATP-dependent RNA helicase [Lactobacillus mucosae LM1]
gi|377554265|gb|EHT15979.1| ATP-dependent RNA helicase [Lactobacillus mucosae LM1]
Length = 458
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 265 SQEKAAKVRSVCKPLKAFGIHTVSLH---PGAAIDHQITGLRSCEPEFLVSTPERLLKLV 321
S+E A ++ + K L F ++H G HQI L+ +P+ ++ TP R+L L+
Sbjct: 80 SRELAYQIYNAAKQLNRFAPQKFTIHNYVGGTDKQHQIDQLQRKQPQLVIGTPGRILDLI 139
Query: 322 SLKAIDVSGVSLLVVDRLD 340
+ +A+D+ VVD D
Sbjct: 140 NSQALDIHTAHRFVVDEAD 158
>gi|374337605|ref|YP_005094310.1| cold-shock DEAD-box protein A [Streptococcus macedonicus ACA-DC
198]
gi|372283710|emb|CCF01907.1| Cold-shock DEAD-box protein A [Streptococcus macedonicus ACA-DC
198]
Length = 526
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 26/141 (18%)
Query: 221 LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK 280
L+ ++ +VQ A ++A + + ++E F F +EK KVRSV
Sbjct: 60 LDKIDTNRNLVQ-ALVIAPTRELAVQGQEELFRF----------GREKGVKVRSV----- 103
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340
+ G++I+ QI LRS +V TP RLL L+ KA+ + V L++D D
Sbjct: 104 ---------YGGSSIEKQIKALRSGA-HIVVGTPGRLLDLIKRKALKLDHVETLILDEAD 153
Query: 341 SLSKGDTLSLIRQSISGKPHT 361
+ L I IS P T
Sbjct: 154 EMLNMGFLEDIEAIISRVPET 174
>gi|91784149|ref|YP_559355.1| ATP-dependent RNA helicase [Burkholderia xenovorans LB400]
gi|91688103|gb|ABE31303.1| Putative ATP-dependent RNA helicase [Burkholderia xenovorans LB400]
Length = 537
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P +L L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 141 PTMLVLTPTRELAMQVTTAAA---TYGKHLKRLRTVSILGGVAYGQQLM-LLAKNPEILV 196
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RL+ + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 197 ATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIEDIETIVAATPATRQTMLFSATL 256
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ LL R+ + Q + Q I Q+V+ + K ++LDH D
Sbjct: 257 D-GKITSLTGRLLKDPERIEIVQRM-EQRTNIAQTVHYVDDRDHK----DRLLDHLLRD 309
>gi|73540223|ref|YP_294743.1| helicase [Ralstonia eutropha JMP134]
gi|72117636|gb|AAZ59899.1| Helicase, C-terminal:Type III restriction enzyme, res
subunit:DEAD/DEAH box helicase, N-terminal [Ralstonia
eutropha JMP134]
Length = 506
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 260 LFLVSSQEKAAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L ++E AA+V SV K + ++ + G I+ QI LR E +V+TP RLL
Sbjct: 79 LVLTPTRELAAQVEESVRNYGKYVRLRSMVMFGGVGINPQIEQLRRGV-EIVVATPGRLL 137
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL 342
VS + ID+S V LLV+D D +
Sbjct: 138 DHVSQRTIDLSSVELLVLDEADRM 161
>gi|306833030|ref|ZP_07466162.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
gi|304424929|gb|EFM28063.1| ATP-dependent RNA helicase DeaD [Streptococcus bovis ATCC 700338]
Length = 526
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 26/136 (19%)
Query: 226 SSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIH 285
++ +VQ A ++A + + ++E F F +EK KVRSV
Sbjct: 65 TNRNVVQ-ALVIAPTRELAVQGQEELFRF----------GREKGVKVRSV---------- 103
Query: 286 TVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKG 345
+ G++I+ QI LRS +V TP RLL L+ KA+ + V L++D D +
Sbjct: 104 ----YGGSSIEKQIKALRSGA-HIVVGTPGRLLDLIKRKALKLDHVETLILDEADEMLNM 158
Query: 346 DTLSLIRQSISGKPHT 361
L I IS P T
Sbjct: 159 GFLEDIEAIISRVPET 174
>gi|290994831|ref|XP_002680035.1| ATP-dependent RNA helicase [Naegleria gruberi]
gi|284093654|gb|EFC47291.1| ATP-dependent RNA helicase [Naegleria gruberi]
Length = 629
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGL-RSCEPEFLVS 312
T P +L + ++E + ++ + G TV + GAAI +Q+ L R C+ LV+
Sbjct: 235 TCPSVLIMAPTRELSTQIYDESRKFTYHTGRRTVVAYGGAAIQYQLKQLERGCD--ILVA 292
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI--SGKPH-----TVVFN 365
TP RL+ L+ +I + V LV+D D + IR + +G P T++F+
Sbjct: 293 TPGRLVDLIDRGSISLHNVQYLVLDEADRMLDMGFEPQIRYIVEKTGMPAPGQRITLMFS 352
Query: 366 DCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKIL 415
++ L ++N L++ + V S I+Q C DE++ L
Sbjct: 353 ATFPKNIQTLARDFLHNNLN-LTVGR-VGSTHENILQKFVYCKDDEKRDL 400
>gi|16117825|dbj|BAB69820.1| putative ATP-dependent RNA helicase [Streptococcus sobrinus]
Length = 522
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 28/138 (20%)
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293
A ++A + + ++E F F +EK KVRSV + G+
Sbjct: 72 ALVIAPTRELAVQSQEELFRF----------GREKGVKVRSV--------------YGGS 107
Query: 294 AIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ 353
+ID QI LRS +V TP RLL L+ KA+ ++ + L++D D + L I
Sbjct: 108 SIDKQIKALRSG-AHIVVGTPGRLLDLIKRKALKLNHIETLILDEADEMLNMGFLEDIEA 166
Query: 354 SISGKP---HTVVFNDCL 368
IS P T++F+ +
Sbjct: 167 IISHVPDERQTLLFSATM 184
>gi|392544521|ref|ZP_10291658.1| DEAD/DEAH box helicase [Pseudoalteromonas piscicida JCM 20779]
Length = 443
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P ++ + ++E A +V S C+ L A I + G + Q+ LR +P F+V TP
Sbjct: 74 PRVVIVAPTRELATQVFSECRALCAGTNIQVCKILGGENYNDQVKALRR-DPHFVVGTPG 132
Query: 316 RLLKLVSLKAIDVSGVSLLV---VDRLDSLSKGDTLSLIRQSISGKP-HTVVFNDCLTYT 371
R+ V +++ + G+ LL+ DR+ L L +I S + T++F+ L +T
Sbjct: 133 RIADHVENRSLFLGGLELLIFDEADRMFDLGFEKQLDVINDSADHRQRQTLLFSATLDHT 192
Query: 372 SVPAVQNLLLGSINRLSLNQS 392
V A LL S R+ L+ +
Sbjct: 193 QVEASSRQLLKSPKRIMLSNA 213
>gi|194246516|ref|YP_002004155.1| superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali]
gi|193806873|emb|CAP18302.1| Superfamily II DNA and RNA helicase [Candidatus Phytoplasma mali]
Length = 531
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 10/125 (8%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L L ++E A +V K L F I ++ G + Q L + +P +++TP R+
Sbjct: 75 LILCPTRELALQVFQEFKKLIKFYVEIKIAVIYGGESYIKQFKVLET-KPHIIIATPGRV 133
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDS-LSKG--DTLSLIRQSISGKPHTVVFNDCLTYTSVP 374
+ L+ K ID SG+ +L +D D L+ G + L I Q I K TV+F+ L P
Sbjct: 134 IDLLERKKIDFSGLKILTLDEADEMLNMGFQEALETILQKIPKKRQTVLFSATLP----P 189
Query: 375 AVQNL 379
+Q +
Sbjct: 190 TIQKI 194
>gi|420147527|ref|ZP_14654803.1| ATP-dependent RNA helicase [Lactobacillus gasseri CECT 5714]
gi|398401528|gb|EJN55030.1| ATP-dependent RNA helicase [Lactobacillus gasseri CECT 5714]
Length = 426
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
+ L + E A + R+ P KA G+ T++L Q+ L+ +PE +++TP R
Sbjct: 80 VILEPTTELAIQTRNNLLPYAKALGLKTIALVGAGNRKRQLERLKKEKPEIIIATPGRFF 139
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL---SKGDTLSLIRQSISGKPHTVVF 364
+S I ++ LV+D D + +K D LS + Q++S ++F
Sbjct: 140 DFLSENRIKYQDINALVIDEADDILEFAKLDLLSSLGQNLSSTAQILLF 188
>gi|307729303|ref|YP_003906527.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307583838|gb|ADN57236.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 530
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 18/175 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P +L L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 141 PTMLVLTPTRELAMQVTTAAA---TYGKHLKRLRTVSILGGVAYGQQLM-LLAKNPEILV 196
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RL+ + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 197 ATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIEDIETIVAATPATRQTMLFSATL 256
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDH 423
+ ++ LL R+ + Q + Q I Q+V+ + K ++LDH
Sbjct: 257 D-GKIGSLTGRLLKDPERIEIVQRM-EQRTNIAQTVHYVDDRDHK----DRLLDH 305
>gi|289208213|ref|YP_003460279.1| DEAD/DEAH box helicase [Thioalkalivibrio sp. K90mix]
gi|288943844|gb|ADC71543.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio sp. K90mix]
Length = 441
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH----TVSLHPGAAIDHQITGLRSCEPEFLVS 312
P L L ++E AA+V + +G H ++++ G ++ QI LR + +V+
Sbjct: 80 PRALILTPTRELAAQVHDSVR---TYGRHLSLKSMTIFGGVNMNPQIKALRGPM-DIVVA 135
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
TP RLL K ID+SGV +LV+D D + + IR+ I P
Sbjct: 136 TPGRLLDHAGQKTIDLSGVEILVLDEADRMLDMGFIRDIRRLIGLMP 182
>gi|227112581|ref|ZP_03826237.1| ATP-dependent RNA helicase DeaD [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 627
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 17/173 (9%)
Query: 173 DCPSKFLILCLN-AIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIV 231
D + F L LN +I NA+ G E+ +P+ E + +D+L + + S
Sbjct: 3 DLVTSFADLGLNTSILNALTDLGYEKPSPIQA-----ECIPHLLNGRDVLGMAQTGSG-- 55
Query: 232 QIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK--AFGIHTVSL 289
TAA S+ P +L L ++E A +V C G++ V+L
Sbjct: 56 ------KTAAFSLPLLNNLKPELKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVAL 109
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
+ G D Q+ LR + +V TP RLL + +D+S +S LV+D D +
Sbjct: 110 YGGQRYDVQLRALRGGA-QIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEM 161
>gi|332523459|ref|ZP_08399711.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
str. Jelinkova 176]
gi|332314723|gb|EGJ27708.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
str. Jelinkova 176]
Length = 538
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
G+ S++ GA+ID QI L+S +V TP RLL L+ KA+ + V L++D D +
Sbjct: 97 GVKVRSVYGGASIDKQIKALKSG-AHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEM 155
Query: 343 SKGDTLSLIRQSISGKP---HTVVFNDCL 368
L I IS P T++F+ +
Sbjct: 156 LNMGFLEDIEAIISRVPEERQTLLFSATM 184
>gi|328852836|gb|EGG01979.1| hypothetical protein MELLADRAFT_78893 [Melampsora larici-populina
98AG31]
Length = 537
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 119/283 (42%), Gaps = 28/283 (9%)
Query: 184 NAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETS--GSSSTIV--QIAWIVAT 239
+ I +R G + +P+ +W + S +D++ S GS TI A I
Sbjct: 116 DYIMAEIRKAGFTEPSPIQCQAWPMAL-----SGRDVVAISATGSGKTIAFSLPAMIHIN 170
Query: 240 AADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQ 298
A +A + GP +L L ++E A +++ C A I ++ G Q
Sbjct: 171 AQPLLAPGD-------GPIVLILAPTRELAVQIQGECTKFGASSRIRNTCVYGGVPKGQQ 223
Query: 299 ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--DTLSLIRQSI 355
I L S E +++TP RL+ ++ + ++ V+ LV+D D L G + I + I
Sbjct: 224 IRDL-SRGAEIVIATPGRLIDMLESRRTNLQRVTYLVMDEADRMLDMGFEPQIKKILEQI 282
Query: 356 SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKIL 415
T++F+ + + N L ++++ + + I Q V VC SD EK
Sbjct: 283 RPDRQTLMFSATWP-KEIQRLANEYLKDFIQVNVGSLELTANVNITQIVEVC-SDFEKKG 340
Query: 416 KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
K I+ L + +E KVL VG +L L+ G+
Sbjct: 341 KLIKHL-----EKISAESAKVLIFVGTKRVADDLTKYLRQDGW 378
>gi|342164107|ref|YP_004768746.1| ATP-dependent RNA helicase [Streptococcus pseudopneumoniae IS7493]
gi|383937580|ref|ZP_09990831.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae SK674]
gi|418969098|ref|ZP_13520250.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|341933989|gb|AEL10886.1| ATP-dependent RNA helicase, superfamily II DNA and RNA helicases
[Streptococcus pseudopneumoniae IS7493]
gi|383352431|gb|EID30133.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383715531|gb|EID71486.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae SK674]
Length = 360
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 259 LLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHP-----GAAIDHQITGLRSCEPEFLVST 313
LL L + E A ++ VCK T+ L P G++ QI L+ PE L+ T
Sbjct: 68 LLILAPNTELAGQIFDVCKTWA----ETIGLTPQLFLSGSSQKRQIERLKKG-PEILIGT 122
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
P R+ +L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 123 PGRIFELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|328697425|ref|XP_003240334.1| PREDICTED: ATP-dependent RNA helicase p62-like isoform 2
[Acyrthosiphon pisum]
Length = 516
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 101/233 (43%), Gaps = 16/233 (6%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADS 243
+ +R++G + P+ W I S K+++ +GS T+ V +
Sbjct: 113 VMTVIRNEGFTEPTPIQAQGWPIAM-----SGKNMVGVAQTGSGKTLGYTLPAVVHINNQ 167
Query: 244 IARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGL 302
K+ +G P L L ++E A +++ V ++ + + ++ GA HQ L
Sbjct: 168 EPLKKGDG-----PIALVLAPTRELAQQIQKVAGLFNQSTYLRSTCIYGGAPKSHQARDL 222
Query: 303 RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KPHT 361
+ E +++TP RLL + +A ++ + LV+D D + IR+ I +P
Sbjct: 223 MNGV-EIVIATPGRLLDFLESRATNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDR 281
Query: 362 VVFNDCLTYT-SVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEK 413
V T+ V + N L +L++ S + I+Q+V+VC E++
Sbjct: 282 QVLMWSATWPKEVQKLANDFLSDYIQLNVGSLTLSANHNILQNVDVCQEHEKE 334
>gi|344302066|gb|EGW32371.1| ATP-dependent RNA helicase DBP3 [Spathaspora passalidarum NRRL
Y-27907]
Length = 554
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 24/175 (13%)
Query: 255 TGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVST 313
TG +L + ++E A ++ L A I+ V+++ G + D QI LR+ +V+T
Sbjct: 212 TGLRVLCISPTRELALQIYDNLVDLTANTSINCVAIYGGVSKDDQIKKLRNAN--VVVAT 269
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG---DTLSLIRQSISGKPHTVVFNDCL- 368
P RLL L++ A+D+S + LV+D D L KG D ++I + + T++F
Sbjct: 270 PGRLLDLINDGAVDLSDIDYLVLDEADRMLEKGFEEDIKAIIGNTKAESRQTLMFTATWP 329
Query: 369 --------TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKIL 415
T+ PA + +G + LS N+ + +Q ++Q D+EKIL
Sbjct: 330 KEVRELANTFMKTPA--KVSIGDRDELSANKRI-TQIVEVVQRF-----DKEKIL 376
>gi|412985285|emb|CCO20310.1| predicted protein [Bathycoccus prasinos]
Length = 607
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 256 GPFLLFLVSSQEKAAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP + L ++E A +++ K A ++V ++ GA+ +Q+ LRS P+ +V+TP
Sbjct: 202 GPMAIVLAPTRELATQIQDEALKFGSAVACYSVVVYGGASKGYQLRSLRS-RPQIVVATP 260
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RL + + AID+ S +V+D D +
Sbjct: 261 GRLNDFLEMGAIDLRESSYVVLDEADRM 288
>gi|432328452|ref|YP_007246596.1| DNA/RNA helicase, superfamily II [Aciduliprofundum sp. MAR08-339]
gi|432135161|gb|AGB04430.1| DNA/RNA helicase, superfamily II [Aciduliprofundum sp. MAR08-339]
Length = 450
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
+ LV ++E A +V V + L K G TV ++ G ++++QI GL+ ++ TP R++
Sbjct: 70 IVLVPTRELAQQVDRVARILAKGHGKSTVVIYGGVSMENQIRGLKHAS--VVIGTPGRVM 127
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
L+ +D+S + + V+D D + + IR +S P
Sbjct: 128 DLMRRGYLDLSRIKIFVLDEADRMLDMGFIEDIRWILSKAP 168
>gi|169774379|ref|XP_001821657.1| ATP-dependent RNA helicase dbp9 [Aspergillus oryzae RIB40]
gi|91206553|sp|Q2UFL0.1|DBP9_ASPOR RecName: Full=ATP-dependent RNA helicase dbp9
gi|83769520|dbj|BAE59655.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867816|gb|EIT77056.1| RNA helicase [Aspergillus oryzae 3.042]
Length = 605
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 15/207 (7%)
Query: 217 AKDILE--TSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS 274
KDIL +GS T + I+ T I +K+ SF L LV ++E A +V++
Sbjct: 64 GKDILARAKTGSGKTAAYVLPILQT----ILQKKATDPSFKATTGLILVPTRELAEQVQN 119
Query: 275 VCKPLKAF---GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331
V AF + +V+L + Q T L P+ +VSTP R++ + A+ + +
Sbjct: 120 VVTTFAAFCGKDVRSVNLTQKVSDAVQRTMLADY-PDLVVSTPARVVTNLGSSALSLENL 178
Query: 332 SLLVVDRLD-SLSKG--DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLS 388
+ LV+D D LS G + ++ + ++I T + + LT V ++ L S L
Sbjct: 179 THLVIDEADLVLSYGYEEDINALAKAIPRGVQTFLMSATLT-DEVDTLKGLFCRSPVTLK 237
Query: 389 LNQSVASQSACIIQSVNVCASDEEKIL 415
L Q A + Q V CA DE+ +L
Sbjct: 238 LEDK-DDQGAGVSQFVVRCAEDEKFLL 263
>gi|423686192|ref|ZP_17661000.1| DEAD-box ATP dependent DNA helicase [Vibrio fischeri SR5]
gi|371494260|gb|EHN69858.1| DEAD-box ATP dependent DNA helicase [Vibrio fischeri SR5]
Length = 421
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 10/89 (11%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A + V +K++ +H TVS+ G +++ Q+ LR + LV+T
Sbjct: 89 LVLVPTRELA---KQVADSIKSYAVHFNGAIKTVSVFGGVSVNTQMLALRGG-ADILVAT 144
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
P RLL L+S A+ + V LV+D D +
Sbjct: 145 PGRLLDLISSNAVKLDKVKTLVLDEADRM 173
>gi|170099095|ref|XP_001880766.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644291|gb|EDR08541.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 498
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 95/210 (45%), Gaps = 18/210 (8%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFG----IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
GP L L ++E A +++ C FG I +++ GA QI L+ E ++
Sbjct: 134 GPIALVLAPTRELAVQIQQECT---KFGSNSRIRNTAIYGGAPKGPQIRDLQRGV-EIVI 189
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KP--HTVVFNDCL 368
+TP RL+ ++ + ++ V+ LV+D D + IR+ +S +P T++F+
Sbjct: 190 ATPGRLIDMLETQKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDRQTLMFSATW 249
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
V + N L + ++++ + + I Q V VC SD EK K I+ L D
Sbjct: 250 P-KDVQKLANDFLRDMIQVNIGSMELTANHNIQQIVEVC-SDFEKRNKLIKHL-----DQ 302
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
+E KVL V ++ L+ G+
Sbjct: 303 ISAENAKVLIFVATKRVADDITKYLRQDGW 332
>gi|426405343|ref|YP_007024314.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425862011|gb|AFY03047.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 530
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 258 FLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
F+L LV ++E A +V+ L G+ +++ G D Q L++ EF+V+TP R
Sbjct: 76 FVLILVPTRELAEQVQDNINKLSVDSGLRGFAIYGGTGYDKQKEALKNGV-EFIVATPGR 134
Query: 317 LLKLVSLKAIDVSGVSLLV---VDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTY 370
L+ L +D+ V +V DR+ + D + I Q + + +VF+ L +
Sbjct: 135 LIDLYKEHLVDLKQVRAIVFDEADRMFDMGFKDDMKYILQRVPRERQLLVFSATLNF 191
>gi|77361885|ref|YP_341460.1| ATP-dependent RNA helicase [Pseudoalteromonas haloplanktis TAC125]
gi|76876796|emb|CAI88018.1| DEAD-box protein family; putative ATP-dependent RNA helicase with
P-loop hydrolase domain [Pseudoalteromonas haloplanktis
TAC125]
Length = 434
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKA---FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E A +V K A I T+++ G +++ Q+ LR + +V+TP R
Sbjct: 89 LILVPTRELATQVADSVKSYSANFNGAIKTIAVFGGVSVNTQMQALRGGA-DIIVATPGR 147
Query: 317 LLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSV 373
LL L+S AI + ++ LV+ DR+ SL + L+ + + K T++F+
Sbjct: 148 LLDLISSNAIKLDKLNTLVLDEADRMLSLGFTEELAELLALMPAKKQTMLFSATFPEQVK 207
Query: 374 PAVQNLL 380
Q+LL
Sbjct: 208 LLTQDLL 214
>gi|311110992|ref|ZP_07712389.1| ATP-dependent RNA helicase [Lactobacillus gasseri MV-22]
gi|311066146|gb|EFQ46486.1| ATP-dependent RNA helicase [Lactobacillus gasseri MV-22]
Length = 426
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
+ L + E A + R+ P KA G+ T++L Q+ L+ +PE +++TP R
Sbjct: 80 VILEPTTELAIQTRNNLLPYAKALGLKTIALVGAGNRKRQLERLKKEKPEIIIATPGRFF 139
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL---SKGDTLSLIRQSISGKPHTVVF 364
+S I ++ LV+D D + +K D LS + Q++S ++F
Sbjct: 140 DFLSENRIKYQDINALVIDEADDILEFAKLDLLSSLGQNLSSTAQILLF 188
>gi|170696489|ref|ZP_02887614.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170138592|gb|EDT06795.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 537
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 18/191 (9%)
Query: 245 ARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQI 299
AR + P +L L ++E A +V + +G H TVS+ G A Q+
Sbjct: 132 ARNTRRPQPVARPTMLVLTPTRELAMQVTTAAA---TYGKHLKRLRTVSILGGVAYGQQL 188
Query: 300 TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
L + PE LV+TP RL+ + ID+S + +LV+D D + + I ++ P
Sbjct: 189 M-LLAKNPEILVATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIEDIETIVAATP 247
Query: 360 ---HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILK 416
T++F+ L + ++ LL R+ + Q + Q I Q+V+ + K
Sbjct: 248 ATRQTMLFSATLD-GKIGSLTGRLLKDPERIEIVQRL-EQRTNIAQTVHYVDDRDHK--- 302
Query: 417 GIQVLDHAYGD 427
++LDH D
Sbjct: 303 -DRLLDHLLRD 312
>gi|296090368|emb|CBI40187.3| unnamed protein product [Vitis vinifera]
Length = 66
Score = 45.4 bits (106), Expect = 0.063, Method: Composition-based stats.
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 233 IAWIVATAADSIARKEKEGFSFTGPFLLFL 262
+ W+++TAAD+IARKEKEG T PFLL
Sbjct: 23 LPWMISTAADAIARKEKEGLFLTSPFLLIF 52
>gi|59712046|ref|YP_204822.1| DEAD/DEAH box helicase [Vibrio fischeri ES114]
gi|59480147|gb|AAW85934.1| ATP-dependent RNA helicase, DEAD box family [Vibrio fischeri ES114]
Length = 421
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 10/89 (11%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A + V +K++ +H TVS+ G +++ Q+ LR + LV+T
Sbjct: 89 LVLVPTRELA---KQVADSIKSYAVHFNGAIKTVSVFGGVSVNTQMLALRGGA-DILVAT 144
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
P RLL L+S A+ + V LV+D D +
Sbjct: 145 PGRLLDLISSNAVKLDKVKTLVLDEADRM 173
>gi|42524815|ref|NP_970195.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
gi|39577025|emb|CAE78254.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
Length = 549
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 258 FLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
F+L LV ++E A +V+ L G+ +++ G D Q L++ EF+V+TP R
Sbjct: 94 FVLILVPTRELAEQVQDNINKLSVDSGLRGFAIYGGTGYDKQKEALKNGV-EFIVATPGR 152
Query: 317 LLKLVSLKAIDVSGVSLLV---VDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTY 370
L+ L +D+ V +V DR+ + D + I Q + + +VF+ L +
Sbjct: 153 LIDLYKEHLVDLKQVRAIVFDEADRMFDMGFKDDMKYILQRVPRERQLLVFSATLNF 209
>gi|306830918|ref|ZP_07464080.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|304426941|gb|EFM30051.1| ATP-dependent RNA helicase DeaD [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
Length = 526
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 26/141 (18%)
Query: 221 LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK 280
L+ ++ +VQ A ++A + + ++E F F +EK KVRSV
Sbjct: 60 LDKIDTNRNLVQ-ALVIAPTRELAVQGQEELFRF----------GREKGVKVRSV----- 103
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340
+ G++I+ QI LRS +V TP RLL L+ KA+ + V L++D D
Sbjct: 104 ---------YGGSSIEKQIKALRSGA-HIVVGTPGRLLDLIKRKALKLDHVETLILDEAD 153
Query: 341 SLSKGDTLSLIRQSISGKPHT 361
+ L I IS P T
Sbjct: 154 EMLNMGFLEDIEAIISRVPET 174
>gi|240279271|gb|EER42776.1| ATP-dependent RNA helicase DHH1 [Ajellomyces capsulatus H143]
gi|325089541|gb|EGC42851.1| ATP-dependent RNA helicase DHH1 [Ajellomyces capsulatus H88]
Length = 514
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 67/174 (38%), Gaps = 22/174 (12%)
Query: 207 GIEFWKCYSSAK---DILETSGSSSTIVQIAWI-VATAADSIARKEKEGFSFTGPFL--- 259
G+EF Y + I E + +Q I VA I + K G T F+
Sbjct: 45 GLEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPT 104
Query: 260 -------------LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSC 305
L LV ++E A + VCK L K GI+ + G + I L
Sbjct: 105 LERTNPKNSKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLNEA 164
Query: 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
+V TP R+L L S D+S S V+D D L + +I Q +S P
Sbjct: 165 V-HIIVGTPGRILDLASKGVADLSDCSTFVMDEADKLLSPEFTPVIEQLLSFHP 217
>gi|406673517|ref|ZP_11080738.1| hypothetical protein HMPREF9700_01280 [Bergeyella zoohelcum CCUG
30536]
gi|405585982|gb|EKB59774.1| hypothetical protein HMPREF9700_01280 [Bergeyella zoohelcum CCUG
30536]
Length = 550
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-L 342
+ + +++ G++I QI LR +P+ +V TP R++ L+ KA+D S +S LV+D D L
Sbjct: 101 VKSTAVYGGSSITDQIRSLRE-KPQIIVGTPGRVIDLIKRKALDFSEISWLVLDEADEML 159
Query: 343 SKG--DTLSLIRQSISGKPHTVVFNDCL 368
S G D L I T++F+ +
Sbjct: 160 SMGFKDDLETILGETPETKQTLLFSATM 187
>gi|409407228|ref|ZP_11255679.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
gi|386432979|gb|EIJ45805.1| ATP-dependent RNA helicase [Herbaspirillum sp. GW103]
Length = 508
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 6/131 (4%)
Query: 243 SIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQIT 300
S AR E+ + P +L L ++E A +V + A+ + VS+ G Q+
Sbjct: 83 SRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYGAYMRRVRVVSILGGMPYPKQMQ 142
Query: 301 GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP- 359
L S PE LV+TP RL+ + ID S + +LV+D D + + I + ++ P
Sbjct: 143 -LLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEADRMLDMGFIDDIEKIVAATPA 201
Query: 360 --HTVVFNDCL 368
T++F+ L
Sbjct: 202 TRQTMLFSATL 212
>gi|315640654|ref|ZP_07895759.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
italicus DSM 15952]
gi|315483593|gb|EFU74084.1| DEAD/DEAH box family ATP-dependent RNA helicase [Enterococcus
italicus DSM 15952]
Length = 431
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 5/153 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
+L + SSQE A +V V K + GI S GA I QI L+ PE +V TP R+
Sbjct: 69 VLIVTSSQELAMQVLEVSKTWAEDLGIAAQSAIGGANIQRQIEKLKH-HPELIVGTPGRI 127
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSIS--GKPHTVVFNDCLTYTSVPA 375
++L+ + ++ + ++ D D L D L+++ I GK T F ++
Sbjct: 128 VELIRARKMNPFLIQTVIFDEADQLINNDQQGLVKEIIQTVGKKSTFGFFSATADAALSP 187
Query: 376 VQNLLLGSINRLSLNQSVASQSACIIQSVNVCA 408
++ ++ + + + Q SQ A Q + + A
Sbjct: 188 IKK-IVPDLLVIDVTQVDTSQGAVAHQYIMIPA 219
>gi|304437212|ref|ZP_07397172.1| ATP-dependent RNA helicase DeaD [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304369704|gb|EFM23369.1| ATP-dependent RNA helicase DeaD [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 426
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 15/156 (9%)
Query: 190 MRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEK 249
++ G+ Q P V I + + +D++ + T +A+++ +AR +
Sbjct: 17 LQKQGITQPTP--VQEQAIPPMR---AGRDVI-AQAQTGTGKTLAYLLPL----LARIKP 66
Query: 250 EGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPE 308
+G + L + ++E A ++ V +PL + GI TV ++ GA I+ Q LR P+
Sbjct: 67 QGAAAQA---LVIAPTRELAIQIERVAEPLAQPLGIGTVVIYGGADIERQKEKLRRS-PQ 122
Query: 309 FLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK 344
++ TP RLL V + + V+ +V+D D + K
Sbjct: 123 LVIGTPGRLLDHVRRGTLALGSVNKVVLDEADEMLK 158
>gi|440793408|gb|ELR14592.1| atpdependent rna helicase ddx6, putative [Acanthamoeba castellanii
str. Neff]
Length = 407
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 62/151 (41%), Gaps = 18/151 (11%)
Query: 226 SSSTIVQIAWIVATAADSIARKEKEGFSFTGPFL----------------LFLVSSQEKA 269
+ S I + A +A A I + K G T FL L LV ++E A
Sbjct: 63 NPSPIQEEAIPIALAGRDILARAKNGTGKTASFLIPALERINTEQNIIQALILVPTRELA 122
Query: 270 AKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDV 328
+ VCK L K + + G ++ I L S LV+TP R+L L K D+
Sbjct: 123 LQTSQVCKELGKHMNVKVMVTTGGTSLKEDIMRLHSV-VHILVATPGRVLDLAKKKVADL 181
Query: 329 SGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
S + +V+D D L + L+ Q I P
Sbjct: 182 SKCTFMVMDEADKLLSPEFQPLVEQIIEFTP 212
>gi|241896469|ref|ZP_04783765.1| ATP-dependent RNA helicase [Weissella paramesenteroides ATCC 33313]
gi|241870191|gb|EER73942.1| ATP-dependent RNA helicase [Weissella paramesenteroides ATCC 33313]
Length = 431
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G LL L SQE A + V + + +SL GA I HQ+ L+ PE L+ TP
Sbjct: 61 GEQLLILAPSQELAMQTTRVIRDWANVLSLKVLSLTGGANIKHQLDRLKK-HPEILIGTP 119
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLI 351
R+ +L++ + + + L++D D L + DT + I
Sbjct: 120 GRVSELIANGKLKLKRLRTLILDEADELLRDDTANQI 156
>gi|417920995|ref|ZP_12564490.1| type III restriction enzyme, res subunit [Streptococcus cristatus
ATCC 51100]
gi|342834915|gb|EGU69173.1| type III restriction enzyme, res subunit [Streptococcus cristatus
ATCC 51100]
Length = 371
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK + G+ L G + QI L+ PE L+ TP R+
Sbjct: 78 LLILAPNTELAGQIFDVCKSWAEPLGLSNQLLLSGNSQKRQIERLKKG-PEILIGTPGRI 136
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
+L+ LK I + V +++D D L + + + + P H +++
Sbjct: 137 FELIKLKKIKMMNVETIILDEFDQLLSDSQYAFVDKILHYAPRDHQLIY 185
>gi|407713964|ref|YP_006834529.1| DEAD/DEAH box helicase [Burkholderia phenoliruptrix BR3459a]
gi|407236148|gb|AFT86347.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phenoliruptrix BR3459a]
Length = 526
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 18/175 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P +L L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 130 PTMLVLTPTRELAMQVTTAAA---TYGKHLKRLRTVSILGGVAYGQQLM-LLAKNPEILV 185
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RL+ + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 186 ATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATL 245
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDH 423
+ ++ LL R+ + Q + Q I Q+V+ + K ++LDH
Sbjct: 246 D-GKIGSLTGRLLKDPERIEIVQRM-EQRTNIAQTVHYVDDRDHK----DRLLDH 294
>gi|187924463|ref|YP_001896105.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
gi|187715657|gb|ACD16881.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
PsJN]
Length = 542
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P +L L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 141 PTMLVLTPTRELAMQVTTAAA---TYGKHLKRLRTVSILGGVAYGQQLM-LLAKNPEILV 196
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RL+ + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 197 ATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIEDIETIVAATPATRQTMLFSATL 256
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ LL R+ + Q + Q I Q+V+ + K ++LDH D
Sbjct: 257 D-GKITSLTGRLLKDPERIEIVQRL-EQRTNIAQTVHYVDDRDHK----DRLLDHLLRD 309
>gi|417885090|ref|ZP_12529249.1| DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus oris F0423]
gi|341596386|gb|EGS38989.1| DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus oris F0423]
Length = 457
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 265 SQEKAAKVRSVCKPLKAFGIHTVSLH---PGAAIDHQITGLRSCEPEFLVSTPERLLKLV 321
S+E A ++ + K L F +++H G HQI L +P+ ++ TP R+L L+
Sbjct: 81 SRELAYQIYNAAKQLNQFADQPLTIHNYVGGTDKQHQIAQLERKQPQLVIGTPGRVLDLI 140
Query: 322 SLKAIDVSGVSLLVVDRLD 340
+ +DV ++ VVD D
Sbjct: 141 KSQHLDVHTATMFVVDEAD 159
>gi|422846470|ref|ZP_16893153.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK72]
gi|422876652|ref|ZP_16923122.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK1056]
gi|325687913|gb|EGD29933.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK72]
gi|332361460|gb|EGJ39264.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK1056]
Length = 363
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK + G+ L G++ QI L+ PE ++ TP R+
Sbjct: 70 LLILAPNTELAGQIFEVCKTWAEPLGLTAQLLLSGSSQKRQIERLKKG-PEIIIGTPGRI 128
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSL 342
+LV LK I + V +++D D L
Sbjct: 129 FELVKLKKIKMMNVETIILDEFDQL 153
>gi|312870458|ref|ZP_07730578.1| DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus oris
PB013-T2-3]
gi|311094015|gb|EFQ52339.1| DEAD-box ATP-dependent RNA helicase CshB [Lactobacillus oris
PB013-T2-3]
Length = 457
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 265 SQEKAAKVRSVCKPLKAFGIHTVSLH---PGAAIDHQITGLRSCEPEFLVSTPERLLKLV 321
S+E A ++ + K L F +++H G HQI L +P+ ++ TP R+L L+
Sbjct: 81 SRELAYQIYNAAKQLNQFADQPLTIHNYVGGTDKQHQIAQLERKQPQLVIGTPGRVLDLI 140
Query: 322 SLKAIDVSGVSLLVVDRLD 340
+ +DV ++ VVD D
Sbjct: 141 KSQHLDVHTATMFVVDEAD 159
>gi|365926223|ref|ZP_09448986.1| ATP-dependent RNA helicase [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|420265483|ref|ZP_14768038.1| ATP-dependent RNA helicase [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394427953|gb|EJF00565.1| ATP-dependent RNA helicase [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 451
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G L+ + SQE AA++ V + K + +SL GA + QI L+ PE ++ TP
Sbjct: 89 GVQLVIVAPSQELAAQITEVARQWAKLVDLTVLSLIGGANVKRQIEKLKKA-PEVVIGTP 147
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTV 362
R+L+L K + + V V D D L TL R ++ P V
Sbjct: 148 GRMLELAENKKLKLHNVKAFVFDEADDLLTEQTLVACRSLLNHAPGIV 195
>gi|422882093|ref|ZP_16928549.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK355]
gi|332361857|gb|EGJ39660.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK355]
Length = 363
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK + G+ L G++ QI L+ PE ++ TP R+
Sbjct: 70 LLILAPNTELAGQIFEVCKTWAEPLGLTAQILLSGSSQKRQIERLKKG-PEIIIGTPGRI 128
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSL 342
+LV LK I + V +++D D L
Sbjct: 129 FELVKLKKIKMMNVETIILDEFDQL 153
>gi|389631667|ref|XP_003713486.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Magnaporthe
oryzae 70-15]
gi|152032666|sp|A4RN46.1|PRP5_MAGO7 RecName: Full=Pre-mRNA-processing ATP-dependent RNA helicase PRP5
gi|351645819|gb|EHA53679.1| pre-mRNA-processing ATP-dependent RNA helicase PRP5 [Magnaporthe
oryzae 70-15]
Length = 1012
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 97/212 (45%), Gaps = 18/212 (8%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L L ++E A ++ CKP LK G+ V + G I QI L+ E +V+T
Sbjct: 451 GPIGLILTPTRELAVQIFRDCKPFLKTLGLRAVCAYGGPPIKDQIADLKRGA-EIVVATT 509
Query: 315 ERLLKLVSL---KAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ + + + + +V+D D + G +++ + +P TV+F+
Sbjct: 510 GRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANVRPDRQTVLFS--- 566
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHAYG 426
++P + + L+ + + + V +S A I + ++ K + +++L Y
Sbjct: 567 --ATMPKIMDALVKKVLKNPVEIEVGGKSVVASEITQIVEIRDEKSKFNRLLELLGELYK 624
Query: 427 DHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
D + ++ L V + K L+ L KGY
Sbjct: 625 DD---DDVRSLIFVERQEKADELLRELLRKGY 653
>gi|85000347|ref|XP_954892.1| ATP-dependent (RNA) helicase [Theileria annulata strain Ankara]
gi|65303038|emb|CAI75416.1| ATP-dependent (RNA) helicase, putative [Theileria annulata]
Length = 811
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 106/247 (42%), Gaps = 29/247 (11%)
Query: 224 SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF- 282
+GS T+ I+ IV + S G L L+ ++E A +V V K F
Sbjct: 56 TGSGKTVAYISPIVQLL--------EAHSSVVGVRCLILLPTRELALQVEGVLKKFVNFS 107
Query: 283 ----GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDR 338
+ V L G +++ Q L S P+ +++TP RL+ + K++ +S V+ LV+D
Sbjct: 108 NQSDALRVVLLIGGKSVESQFGAL-SFNPDIVIATPGRLVYHLEQKSLSLSLVTHLVIDE 166
Query: 339 LDSLSKGDTLSLIRQSISGKPHT--VVFNDCLTYTSVPAVQNLLLGS--INRLSLNQSVA 394
D L + L I + + P VV T + + L + +L +Q++
Sbjct: 167 ADKLFEMGFLPDIYKVFAHLPKVKQVVLVSATLPTQLSEFVSFGLNEPIVTKLDQDQNIN 226
Query: 395 SQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLK 454
Q +Q + + +EEKI ++VL+ Y D LK + V + + L
Sbjct: 227 EQ----LQMSFIYSRNEEKISVLLRVLN-KYKD------LKSIVFVATRHHVEFFRTLLH 275
Query: 455 CKGYSIS 461
GYS+S
Sbjct: 276 KLGYSVS 282
>gi|349575990|ref|ZP_08887887.1| ATP-dependent RNA helicase RhlE [Neisseria shayeganii 871]
gi|348012457|gb|EGY51407.1| ATP-dependent RNA helicase RhlE [Neisseria shayeganii 871]
Length = 444
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 23/187 (12%)
Query: 188 NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQIAWIVATAADSIA 245
+A+R G E+ P+ V + KDI+ + +GS T A+++ +
Sbjct: 16 SALRSAGYEEPTPIQVQALPAAL-----EGKDIMASAQTGSGKTA---AFLLPSLQRITK 67
Query: 246 RKEKEGFSFTGPFLLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITG 301
R EK G GP +L L ++E AA+V ++ + +K + TV+L G++ QI
Sbjct: 68 RSEKPG---KGPRILVLTPTRELAAQVEKNAQTYAQNMKW--LRTVTLVGGSSFGFQIKA 122
Query: 302 LRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-- 359
L S + +V+TP RL+ + ID + +LV+D D + + I ++ P
Sbjct: 123 L-SRPVDVIVATPGRLMDHMRSGRIDFDRLEVLVLDEADRMLDMGFIDDIETIVAATPAE 181
Query: 360 -HTVVFN 365
T++F+
Sbjct: 182 RQTLLFS 188
>gi|197336247|ref|YP_002156253.1| ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
gi|197317737|gb|ACH67184.1| putative ATP-dependent RNA helicase RhlE [Vibrio fischeri MJ11]
Length = 421
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 10/89 (11%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A + V +K++ +H TVS+ G +++ Q+ LR + LV+T
Sbjct: 89 LVLVPTRELA---KQVADSIKSYAVHFNGAIKTVSVFGGVSVNTQMLALRGGA-DILVAT 144
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
P RLL L+S A+ + V LV+D D +
Sbjct: 145 PGRLLDLISSNAVKLDKVKTLVLDEADRM 173
>gi|116629232|ref|YP_814404.1| superfamily II DNA/RNA helicase [Lactobacillus gasseri ATCC 33323]
gi|116094814|gb|ABJ59966.1| Superfamily II DNA and RNA helicase [Lactobacillus gasseri ATCC
33323]
Length = 435
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
+ L + E A + R+ P KA G+ T++L Q+ L+ +PE +++TP R
Sbjct: 89 VILEPTTELAIQTRNNLLPYAKALGLKTIALVGAGNRKRQLERLKKEKPEIIIATPGRFF 148
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL---SKGDTLSLIRQSISGKPHTVVF 364
+S I ++ LV+D D + +K D LS + Q++S ++F
Sbjct: 149 DFLSENRIKYQDINALVIDEADDILEFAKLDLLSSLGQNLSSTAQILLF 197
>gi|36787780|emb|CAE16895.1| inducible ATP-independent RNA helicase [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 644
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAID 296
TAA S+ P +L L ++E A +V C ++ V+L+ G D
Sbjct: 63 TAAFSLPLLHNINAELKAPQILVLAPTRELAVQVAEACADFSKHMRNVNVVALYGGQRYD 122
Query: 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
Q+ LR P+ +V TP RLL + +D+S +S LV+D D +
Sbjct: 123 VQLRALRQG-PQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEM 167
>gi|28900438|ref|NP_800093.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD 2210633]
gi|153839119|ref|ZP_01991786.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AQ3810]
gi|260362342|ref|ZP_05775305.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
K5030]
gi|260877390|ref|ZP_05889745.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AN-5034]
gi|260898427|ref|ZP_05906923.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
Peru-466]
gi|260902841|ref|ZP_05911236.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AQ4037]
gi|28808749|dbj|BAC61926.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus RIMD
2210633]
gi|149747374|gb|EDM58342.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AQ3810]
gi|308085134|gb|EFO34829.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
Peru-466]
gi|308090862|gb|EFO40557.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AN-5034]
gi|308107910|gb|EFO45450.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
AQ4037]
gi|308111121|gb|EFO48661.1| putative ATP-dependent RNA helicase RhlE [Vibrio parahaemolyticus
K5030]
Length = 416
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 15/131 (11%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRS-CEPEFLVS 312
L LV ++E A++V +K++ H TV++ G +++ Q+ LR C+ +V+
Sbjct: 87 LILVPTRELASQV---AYNVKSYSYHLRDKIKTVAVFGGVSVNPQMLALRGGCD--IIVA 141
Query: 313 TPERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLT 369
TP RLL LVS AI + V LV+ DR+ SL + L+ I + K T++F+
Sbjct: 142 TPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLPEKKQTLLFSATFP 201
Query: 370 YTSVPAVQNLL 380
Q+LL
Sbjct: 202 EKVTALAQHLL 212
>gi|418963292|ref|ZP_13515131.1| DEAD/DEAH box helicase [Streptococcus anginosus subsp. whileyi CCUG
39159]
gi|383343407|gb|EID21591.1| DEAD/DEAH box helicase [Streptococcus anginosus subsp. whileyi CCUG
39159]
Length = 565
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 29/151 (19%)
Query: 221 LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK 280
LE + + +VQ A ++A + + ++E F F + K KVRSV
Sbjct: 107 LEKINTENPVVQ-ALVIAPTRELAVQSQEELFRF----------GRSKGVKVRSV----- 150
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340
+ G++I+ QI LRS +V TP RLL L+ KA+ ++ V L++D D
Sbjct: 151 ---------YGGSSIEKQIKALRSG-AHIVVGTPGRLLDLIKRKALKLNHVETLILDEAD 200
Query: 341 SLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+ L I IS P T++F+ +
Sbjct: 201 EMLNMGFLEDIEAIISRVPEERQTLLFSATM 231
>gi|187479813|ref|YP_787838.1| ATP-dependent RNA helicase [Bordetella avium 197N]
gi|115424400|emb|CAJ50953.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
Length = 477
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIHT----VSLHPGAAIDHQITGLRSCEPEFLVS 312
P L L ++E A+V + ++ +G HT + + G I+ QI+ LR + LV+
Sbjct: 80 PRCLILTPTRELTAQV---AESVQVYGKHTGLTSMVMFGGVNINPQISALRKPV-DILVA 135
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
TP RLL K +D+SGV +LV+D D +
Sbjct: 136 TPGRLLDHCGQKTVDLSGVEILVLDEADRM 165
>gi|328697427|ref|XP_001946984.2| PREDICTED: ATP-dependent RNA helicase p62-like isoform 1
[Acyrthosiphon pisum]
Length = 551
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 101/233 (43%), Gaps = 16/233 (6%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADS 243
+ +R++G + P+ W I S K+++ +GS T+ V +
Sbjct: 148 VMTVIRNEGFTEPTPIQAQGWPIAM-----SGKNMVGVAQTGSGKTLGYTLPAVVHINNQ 202
Query: 244 IARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGL 302
K+ +G P L L ++E A +++ V ++ + + ++ GA HQ L
Sbjct: 203 EPLKKGDG-----PIALVLAPTRELAQQIQKVAGLFNQSTYLRSTCIYGGAPKSHQARDL 257
Query: 303 RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KPHT 361
+ E +++TP RLL + +A ++ + LV+D D + IR+ I +P
Sbjct: 258 MNGV-EIVIATPGRLLDFLESRATNLQRCTYLVLDEADRMLDMGFEPQIRKIIQQIRPDR 316
Query: 362 VVFNDCLTYT-SVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEK 413
V T+ V + N L +L++ S + I+Q+V+VC E++
Sbjct: 317 QVLMWSATWPKEVQKLANDFLSDYIQLNVGSLTLSANHNILQNVDVCQEHEKE 369
>gi|290559021|gb|EFD92400.1| DEAD/DEAH box helicase domain protein [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 434
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 14/136 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P + +V ++E A +V V K + GI T +++ GA+I+ QI +R+ +V TP
Sbjct: 68 PSAMVIVPTRELAMQVTDVAKQIGHNIGIRTFTVYGGASINIQIEAIRAGV-NIIVGTPG 126
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLD-SLSKG--DTLSLIRQSISGKPHTVVFNDCLT--- 369
R++ L+ + + LV+D D L G D + I I + T+ F+ +
Sbjct: 127 RVIDLIKRGELPTDQIKFLVLDEFDIMLDMGFIDDVKYILSKIPQEKQTMFFSATIPSEI 186
Query: 370 ------YTSVPAVQNL 379
YT P + N+
Sbjct: 187 RAVTNKYTKNPIIINI 202
>gi|242012227|ref|XP_002426835.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212511048|gb|EEB14097.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 678
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 110/278 (39%), Gaps = 21/278 (7%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDI--LETSGSSSTIVQIAWIVATAADS 243
I N +R G P+ W I S KDI + +GS TI + + +
Sbjct: 138 IMNVIRKQGFTVPTPIQAQGWPIAL-----SGKDIVGIAKTGSGKTIAYMLPAIVHIHNQ 192
Query: 244 IARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGL 302
+ +G P L L ++E A +++SV +A I + GA Q L
Sbjct: 193 PPLELNDG-----PIALILAPTRELAQQIQSVANDFGEATRIRNSCIFGGAPKGPQFRDL 247
Query: 303 RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KPHT 361
S E +++TP RL+ + ++ + LV+D D + IR+ + +P
Sbjct: 248 ESGV-EIVIATPGRLIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIVEQIRPDR 306
Query: 362 VVFNDCLTYT-SVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQV 420
V T+ V A+ L +L++ S + I+Q V+VC E++ ++
Sbjct: 307 QVLMWSATWPKEVRALAEDYLTDYIQLNIGSLQLSANHNILQIVDVCQEHEKE--NKLRQ 364
Query: 421 LDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
L H G + K + V K N+ L+ G+
Sbjct: 365 LLHEIGSEKEN---KTIIFVETKRKVDNITQILRKDGW 399
>gi|161579561|ref|NP_931687.2| ATP-dependent RNA helicase DeaD [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 639
Score = 45.4 bits (106), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAID 296
TAA S+ P +L L ++E A +V C ++ V+L+ G D
Sbjct: 58 TAAFSLPLLHNINAELKAPQILVLAPTRELAVQVAEACADFSKHMRNVNVVALYGGQRYD 117
Query: 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
Q+ LR P+ +V TP RLL + +D+S +S LV+D D +
Sbjct: 118 VQLRALRQG-PQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEM 162
>gi|322385482|ref|ZP_08059126.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
cristatus ATCC 51100]
gi|321270220|gb|EFX53136.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
cristatus ATCC 51100]
Length = 371
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK + G+ L G + QI L+ PE L+ TP R+
Sbjct: 78 LLILAPNTELAGQIFDVCKSWAEPLGLSNQLLLSGNSQKRQIERLKKG-PEILIGTPGRI 136
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVF 364
+L+ LK I + V +++D D L + + + + P H +++
Sbjct: 137 FELIKLKKIKMMNVETIILDEFDQLLSDSQYAFVDKILHYAPRDHQLIY 185
>gi|422851817|ref|ZP_16898487.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK150]
gi|325694295|gb|EGD36209.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK150]
Length = 363
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK + G+ L G++ QI L+ PE ++ TP R+
Sbjct: 70 LLILAPNTELAGQIFEVCKTWAEPLGLTAQLLLSGSSQKRQIERLKKG-PEIIIGTPGRI 128
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSL 342
+LV LK I + V +++D D L
Sbjct: 129 FELVKLKKIKMMNVETIILDEFDQL 153
>gi|225559536|gb|EEH07818.1| ATP-dependent RNA helicase DHH1 [Ajellomyces capsulatus G186AR]
Length = 511
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 67/174 (38%), Gaps = 22/174 (12%)
Query: 207 GIEFWKCYSSAK---DILETSGSSSTIVQIAWI-VATAADSIARKEKEGFSFTGPFL--- 259
G+EF Y + I E + +Q I VA I + K G T F+
Sbjct: 45 GLEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPT 104
Query: 260 -------------LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSC 305
L LV ++E A + VCK L K GI+ + G + I L
Sbjct: 105 LERTNPKNSKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLNEA 164
Query: 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
+V TP R+L L S D+S S V+D D L + +I Q +S P
Sbjct: 165 V-HIIVGTPGRILDLASKGVADLSDCSTFVMDEADKLLSPEFTPVIEQLLSFHP 217
>gi|394988697|ref|ZP_10381532.1| DEAD/DEAH box helicase domain-containingprotein [Sulfuricella
denitrificans skB26]
gi|393792076|dbj|GAB71171.1| DEAD/DEAH box helicase domain-containingprotein [Sulfuricella
denitrificans skB26]
Length = 445
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 260 LFLVSSQEKAAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L+ ++E AA+V SV K ++++++ G I+ QIT LR + LV+TP RLL
Sbjct: 81 LILIPTRELAAQVEESVRDYGKHLKLNSMTMIGGVNINPQITKLRG-RVDILVATPGRLL 139
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL 342
V K +D+S V +LV+D D +
Sbjct: 140 DHVQQKTVDLSHVEILVLDEADRM 163
>gi|422860338|ref|ZP_16906982.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK330]
gi|327469534|gb|EGF15003.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK330]
Length = 363
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK + G+ L G++ QI L+ PE ++ TP R+
Sbjct: 70 LLILAPNTELAGQIFEVCKTWAEPLGLTAQLLLSGSSQKRQIERLKKG-PEIIIGTPGRI 128
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSL 342
+LV LK I + V +++D D L
Sbjct: 129 FELVKLKKIKMMNVETIILDEFDQL 153
>gi|422848872|ref|ZP_16895548.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK115]
gi|325689893|gb|EGD31897.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK115]
Length = 363
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK + G+ L G++ QI L+ PE ++ TP R+
Sbjct: 70 LLILAPNTELAGQIFEVCKTWAEPLGLTAQLLLSGSSQKRQIERLKKG-PEIIIGTPGRI 128
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSL 342
+LV LK I + V +++D D L
Sbjct: 129 FELVKLKKIKMMNVETIILDEFDQL 153
>gi|313890723|ref|ZP_07824348.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
pseudoporcinus SPIN 20026]
gi|416852122|ref|ZP_11909267.1| DEAD/DEAH box helicase [Streptococcus pseudoporcinus LQ 940-04]
gi|313120824|gb|EFR43938.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
pseudoporcinus SPIN 20026]
gi|356739611|gb|EHI64843.1| DEAD/DEAH box helicase [Streptococcus pseudoporcinus LQ 940-04]
Length = 538
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
G+ S++ GA+ID QI L+S +V TP RLL L+ KA+ + V L++D D +
Sbjct: 97 GVKVRSVYGGASIDKQIKALKSG-AHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEM 155
Query: 343 SKGDTLSLIRQSISGKP---HTVVFNDCL 368
L I IS P T++F+ +
Sbjct: 156 LNMGFLEDIEAIISRVPEERQTLLFSATM 184
>gi|310287881|ref|YP_003939139.1| Superfamily II DNA and RNA helicase [Bifidobacterium bifidum S17]
gi|309251817|gb|ADO53565.1| Superfamily II DNA and RNA helicase [Bifidobacterium bifidum S17]
Length = 681
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 237 VATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAI 295
+ A+D A +E+ S P L L ++E ++ V +PL +A+G+ TV+++ G +
Sbjct: 125 IRKASDEKAAREQA--SLPRPRGLVLAPTRELVNQIDEVIQPLAEAYGMSTVTVYGGVSY 182
Query: 296 DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLS 343
Q+ GLR+ + +V+ P RL L+ + + V + ++D D ++
Sbjct: 183 ARQVAGLRAGA-DIVVACPGRLEDLLRQGKLSLDAVEITILDEADEMA 229
>gi|431931271|ref|YP_007244317.1| DNA/RNA helicase [Thioflavicoccus mobilis 8321]
gi|431829574|gb|AGA90687.1| DNA/RNA helicase, superfamily II [Thioflavicoccus mobilis 8321]
Length = 417
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 239 TAADSIARKEKEGFSFTG---PFLLFLVSSQEKAAKV-RSVCKPLKAFGIHTVSLHPGAA 294
TAA ++ ++ G TG P L L ++E AA+V S+ + + + + G
Sbjct: 52 TAAFTLPMLQRLGERQTGHQRPRALVLTPTRELAAQVGESIVTYGRYLPLRSAIIFGGVG 111
Query: 295 IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
I QI LR + +V+TP RLL V + +D+SG+ +LV+D D +
Sbjct: 112 IQPQIAQLRRGV-DIVVATPGRLLDHVGQRTLDLSGIEILVLDEADRM 158
>gi|254506284|ref|ZP_05118427.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
gi|219550764|gb|EED27746.1| DNA and RNA helicase [Vibrio parahaemolyticus 16]
Length = 426
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 10/144 (6%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
+ L ++E AA++ S + + + TV+++ GA + Q L + + LV+TP RL+
Sbjct: 78 VILAPTRELAAQIASNIQDYTKYTDVKTVAIYGGAKMSSQQKALEAG-VDVLVATPGRLI 136
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG---KPHTVVFNDCLTYTSVPA 375
+ + + + ++ + LV D D + +S I ++G KP T++F+ + A
Sbjct: 137 EHMDMNNVSLANLEFLVFDEADRMLDMGFISAIESIMAGVNTKPQTMLFSATFS-----A 191
Query: 376 VQNLLLGSINRLSLNQSVASQSAC 399
N L G I R SVA ++
Sbjct: 192 QMNTLAGKILRQPKRVSVARENVT 215
>gi|359440113|ref|ZP_09230037.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20429]
gi|358037948|dbj|GAA66286.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20429]
Length = 433
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKA---FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E A +V K A I TV++ G +++ Q+ LR + +V+TP R
Sbjct: 89 LILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVNTQMQALRGGA-DIIVATPGR 147
Query: 317 LLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFN 365
LL L+S AI + ++ LV+ DR+ SL + L+ + + K T++F+
Sbjct: 148 LLDLISSNAIKLDKLNTLVLDEADRMLSLGFTEELAELLALMPAKKQTMLFS 199
>gi|385209074|ref|ZP_10035942.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385181412|gb|EIF30688.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 539
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P +L L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 144 PTMLVLTPTRELAMQVTTAAA---TYGKHLKRLRTVSILGGVAYGQQLM-LLAKNPEILV 199
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RL+ + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 200 ATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIEDIETIVAATPATRQTMLFSATL 259
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ ++ LL R+ + Q + Q I Q+V+ + K ++LDH D
Sbjct: 260 D-GKITSLTGRLLKDPERIEIVQRL-EQRTNIAQTVHYVDDRDHK----DRLLDHLLRD 312
>gi|294675271|ref|YP_003575887.1| DEAD/DEAH box helicase [Prevotella ruminicola 23]
gi|294472504|gb|ADE81893.1| ATP-dependent RNA helicase, DEAD box family [Prevotella ruminicola
23]
Length = 600
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD-- 340
G+H +++ GAAI+ Q+ L+ E +V+TP RL+ L+ + V+ +V+D D
Sbjct: 100 GVHVEAVYGGAAIEPQMRALKKG-VEIIVATPGRLVDLMHRGIARLEQVTNIVLDEADEM 158
Query: 341 -SLSKGDTLSLIRQSISGKPHTVVFNDCLT 369
++ D+++ I +S+S HT++F+ ++
Sbjct: 159 LNMGFSDSINEIFESLSADHHTLMFSATMS 188
>gi|357639882|ref|ZP_09137755.1| DEAD/DEAH box helicase [Streptococcus urinalis 2285-97]
gi|418417504|ref|ZP_12990699.1| hypothetical protein HMPREF9318_01447 [Streptococcus urinalis
FB127-CNA-2]
gi|357588336|gb|EHJ57744.1| DEAD/DEAH box helicase [Streptococcus urinalis 2285-97]
gi|410871423|gb|EKS19371.1| hypothetical protein HMPREF9318_01447 [Streptococcus urinalis
FB127-CNA-2]
Length = 533
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 29/142 (20%)
Query: 230 IVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSL 289
+VQ A ++A + + ++E F F ++K KVRSV FG
Sbjct: 69 VVQ-ALVIAPTRELAVQSQEELFRF----------GRDKGVKVRSV------FG------ 105
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLS 349
G++I+ QI LRS +V TP RLL L+ KA+ + V +L++D D + L
Sbjct: 106 --GSSIEKQIKALRSG-AHIVVGTPGRLLDLIKRKALKLKDVKVLILDEADEMLNMGFLE 162
Query: 350 LIRQSISGKP---HTVVFNDCL 368
I IS P T++F+ +
Sbjct: 163 DIEAIISQVPSERQTLLFSATM 184
>gi|444428260|ref|ZP_21223602.1| ATP-dependent RNA helicase [Vibrio campbellii CAIM 519 = NBRC
15631]
gi|444238494|gb|ELU50097.1| ATP-dependent RNA helicase [Vibrio campbellii CAIM 519 = NBRC
15631]
Length = 447
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 103/239 (43%), Gaps = 25/239 (10%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYS----------SAKDILETS--GSSSTIVQI 233
+EN ++ + DN L N +F K + KD+L +S GS T+
Sbjct: 1 MENTLQFKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTL--- 57
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293
A+++ S+ K FS P + L ++E A +V + + + +L G
Sbjct: 58 AFVLPMLHKSLKTK---SFSAKDPRAVILAPTRELAKQVYGELRSMLGGLTYDAALILGG 114
Query: 294 A-IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR 352
+ Q+ LR P+F+V+TP RL + +++ + G+ LV+D D + +R
Sbjct: 115 ENFNDQVKALRRY-PKFIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELR 173
Query: 353 QSISGKPH----TVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC 407
+ H T++F+ L + V + + +L + R+++ S + I Q +C
Sbjct: 174 RIHKAAKHRRRQTLMFSATLDHAEVNDIASEMLNAPKRIAIGVS-NEEHKDITQKFYLC 231
>gi|315223209|ref|ZP_07865070.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
gi|315187641|gb|EFU21395.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
Length = 539
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 29/151 (19%)
Query: 221 LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK 280
LE + + +VQ A ++A + + ++E F F + K KVRSV
Sbjct: 81 LEKINTENPVVQ-ALVIAPTRELAVQSQEELFRF----------GRSKGVKVRSV----- 124
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340
+ G++I+ QI LRS +V TP RLL L+ KA+ ++ V L++D D
Sbjct: 125 ---------YGGSSIEKQIKALRSG-AHIVVGTPGRLLDLIKRKALKLNHVETLILDEAD 174
Query: 341 SLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+ L I IS P T++F+ +
Sbjct: 175 EMLNMGFLEDIEAIISRVPEERQTLLFSATM 205
>gi|313141010|ref|ZP_07803203.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|313133520|gb|EFR51137.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
Length = 681
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 237 VATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAI 295
+ A+D A +E+ S P L L ++E ++ V +PL +A+G+ TV+++ G +
Sbjct: 125 IRKASDEKAAREQA--SLPRPRGLVLAPTRELVNQIDEVIQPLAEAYGMSTVTVYGGVSY 182
Query: 296 DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLS 343
Q+ GLR+ + +V+ P RL L+ + + V + ++D D ++
Sbjct: 183 ARQVAGLRAGA-DIVVACPGRLEDLLRQGKLSLDAVEITILDEADEMA 229
>gi|91792775|ref|YP_562426.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91714777|gb|ABE54703.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 468
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 106/224 (47%), Gaps = 20/224 (8%)
Query: 188 NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETS--GSSSTIVQIAWIVATAADSIA 245
++++H G+ P+ + I + KD++ +S GS T+ A+++ I+
Sbjct: 25 DSLKHLGITTPTPIQEQALPIAL-----TGKDLMASSKTGSGKTL---AFLLPAMQRIIS 76
Query: 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIH-TVSLHPGAAIDHQITGLRS 304
K S P +L L+ ++E A +V + L A + VS+ G + Q L S
Sbjct: 77 TK---ALSKRDPRVLILLPTRELAQQVYGQLRLLVANTQYKAVSILGGENFNDQAKAL-S 132
Query: 305 CEPEFLVSTPERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGK-PH 360
EP F+V+TP R+ + + + ++G+ LL++ DR+ L L+ I + K
Sbjct: 133 REPHFIVATPGRIADHLQQRHLHLNGLELLILDEADRMLDLGFAPQLAAINAAADHKRRQ 192
Query: 361 TVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSV 404
T++F+ L + + + LL S N +++ + ++ A I Q +
Sbjct: 193 TLMFSATLEHDEINEIAATLLKSPNHIAIG-AAYTEHADITQRI 235
>gi|421733952|ref|ZP_16173044.1| ATP-dependent RNA helicase [Bifidobacterium bifidum LMG 13195]
gi|407078099|gb|EKE50913.1| ATP-dependent RNA helicase [Bifidobacterium bifidum LMG 13195]
Length = 681
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 240 AADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQ 298
A+D A +E+ S P L L ++E ++ V +PL +A+G+ TV+++ G + Q
Sbjct: 128 ASDEKAAREQA--SLPRPRGLVLAPTRELVNQIDEVIQPLAEAYGMSTVTVYGGVSYARQ 185
Query: 299 ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLS 343
+ GLR+ + +V+ P RL L+ + + V + ++D D ++
Sbjct: 186 VAGLRAGA-DIVVACPGRLEDLLRQGKLSLDAVEITILDEADEMA 229
>gi|19173435|ref|NP_597238.1| P68-LIKE PROTEIN (DEAD BOX FAMILY OF RNA HELICASES)
[Encephalitozoon cuniculi GB-M1]
gi|74664187|sp|Q8SRB2.1|DBP2_ENCCU RecName: Full=ATP-dependent RNA helicase DBP2
gi|19171024|emb|CAD26414.1| P68-LIKE PROTEIN (DEAD BOX FAMILY OF RNA HELICASES)
[Encephalitozoon cuniculi GB-M1]
gi|449328762|gb|AGE95038.1| p68-like protein [Encephalitozoon cuniculi]
Length = 495
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 20/226 (8%)
Query: 211 WKCYSSAKDI--LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268
W S +D+ + +GS T+ I + A D + +G P +L L ++E
Sbjct: 118 WPMALSGRDMVGIAQTGSGKTLSFILPALVHAKDQQPLRRGDG-----PIVLVLAPTREL 172
Query: 269 AAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
+++ V F + + +++ GA+ QI L E +++TP RL+ L
Sbjct: 173 VMQIKKVVDEFCGMFNLRSTAVYGGASSQPQIRALHEGA-EVVIATPGRLIDLHDQGHAP 231
Query: 328 VSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSV-P-AVQNLLLGSIN 385
+S V+ LV+D D + +R+ I P T L +++ P V+ L +N
Sbjct: 232 LSRVTFLVLDEADRMLDMGFEPQLRKII---PKTNANRQTLMWSATWPREVRGLAESYMN 288
Query: 386 R----LSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ N+ + + S I Q V VC S EK K I VLD+ GD
Sbjct: 289 EYIQVVVGNEELKTNSK-IKQIVEVC-SGREKEDKLIGVLDNFKGD 332
>gi|56477513|ref|YP_159102.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
gi|56313556|emb|CAI08201.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
Length = 508
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH----TVSLHPGAAIDHQITGLRSCEPEFLVS 312
P L L ++E AA+V ++ +G H ++ + G I+ QI L+ + LV+
Sbjct: 80 PRCLILTPTRELAAQVEES---VRTYGKHLPTTSMVMFGGVGINPQIQALKKRV-DILVA 135
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
TP RLL V K +D+SGV +L++D D +
Sbjct: 136 TPGRLLDHVGQKTLDLSGVEILILDEADRM 165
>gi|390937300|ref|YP_006394859.1| putative ATP-dependent RNA helicase [Bifidobacterium bifidum BGN4]
gi|389890913|gb|AFL04980.1| putative ATP-dependent RNA helicase [Bifidobacterium bifidum BGN4]
Length = 664
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 237 VATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAI 295
+ A+D A +E+ S P L L ++E ++ V +PL +A+G+ TV+++ G +
Sbjct: 108 IRKASDEKAAREQA--SLPRPRGLVLAPTRELVNQIDEVIQPLAEAYGMSTVTVYGGVSY 165
Query: 296 DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLS 343
Q+ GLR+ + +V+ P RL L+ + + V + ++D D ++
Sbjct: 166 ARQVAGLRAGA-DIVVACPGRLEDLLRQGKLSLDAVEITILDEADEMA 212
>gi|433659702|ref|YP_007300561.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus BB22OP]
gi|432511089|gb|AGB11906.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus BB22OP]
Length = 416
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 15/131 (11%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRS-CEPEFLVS 312
L LV ++E A++V +K++ H TV++ G +++ Q+ LR C+ +V+
Sbjct: 87 LILVPTRELASQV---AYNVKSYSYHLRDKIKTVAVFGGVSVNPQMLALRGGCD--IIVA 141
Query: 313 TPERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLT 369
TP RLL LVS AI + V LV+ DR+ SL + L+ I + K T++F+
Sbjct: 142 TPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLPEKKQTLLFSATFP 201
Query: 370 YTSVPAVQNLL 380
Q+LL
Sbjct: 202 EKVTTLAQHLL 212
>gi|423070020|ref|ZP_17058796.1| ATP-dependent RNA helicase exp9 [Streptococcus intermedius F0413]
gi|355366341|gb|EHG14059.1| ATP-dependent RNA helicase exp9 [Streptococcus intermedius F0413]
Length = 514
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 7/118 (5%)
Query: 257 PFLLFLVSSQEKAAKVRS---VCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVST 313
PF+ LV + + V+S + + ++ G+ S++ G++I+ QI L+S +V T
Sbjct: 68 PFIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSG-AHIVVGT 126
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
P RLL L+ KA+ ++ V +L++D D + L I IS P T++F+ +
Sbjct: 127 PGRLLDLIKRKALKLNHVEILILDEADEMLNMGFLEDIEAIISRVPEERQTLLFSATM 184
>gi|288904866|ref|YP_003430088.1| ATP-dependent RNA helicase [Streptococcus gallolyticus UCN34]
gi|288731592|emb|CBI13147.1| putative ATP-dependent RNA helicase [Streptococcus gallolyticus
UCN34]
Length = 526
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 26/141 (18%)
Query: 221 LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK 280
L+ ++ +VQ A ++A + + ++E F F +EK KVRSV
Sbjct: 60 LDKIDTNRNLVQ-ALVIAPTRELAVQGQEELFRF----------GREKGVKVRSV----- 103
Query: 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340
+ G++I+ QI LRS +V TP RLL L+ KA+ + V L++D D
Sbjct: 104 ---------YGGSSIEKQIKALRSGA-HIVVGTPGRLLDLIKRKALKLDHVETLILDEAD 153
Query: 341 SLSKGDTLSLIRQSISGKPHT 361
+ L I IS P T
Sbjct: 154 EMLNMGFLEDIEAIISRVPET 174
>gi|110639488|ref|YP_679697.1| inducible ATP-independent RNA helicase [Cytophaga hutchinsonii ATCC
33406]
gi|110282169|gb|ABG60355.1| inducible ATP-independent RNA helicase [Cytophaga hutchinsonii ATCC
33406]
Length = 457
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
Query: 259 LLFLVSSQEKAAKVRSVCKPLKAFG-----IHTVSLHPGAAIDHQITGLRSCEPEFLVST 313
+L LV ++E + V K L F IHT +++ G I+ QI L + + LV+T
Sbjct: 73 VLVLVPTRELG---QQVAKDLFVFSRYIVRIHTEAVYGGKKIEEQIKKLETPK-HILVAT 128
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
P RLL L++ KA+++S + L++D D +
Sbjct: 129 PGRLLDLIARKAVNLSNLKYLILDEADEM 157
>gi|430761663|ref|YP_007217520.1| ATP-dependent RNA helicase RhlE [Thioalkalivibrio nitratireducens
DSM 14787]
gi|430011287|gb|AGA34039.1| ATP-dependent RNA helicase RhlE [Thioalkalivibrio nitratireducens
DSM 14787]
Length = 506
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 27/180 (15%)
Query: 260 LFLVSSQEKAAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L ++E AA+V+ SV + + ++ + G I+ QI LR + +V+TP RLL
Sbjct: 144 LVLTPTRELAAQVQASVTDYGRYLKMRSMVVFGGVNINPQIKALRGPM-DIVVATPGRLL 202
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQS---ISGKPHTVVFNDCLTYTSVPA 375
V K +D+SG+ +LV+D D + + IR+ + GK ++F+ +
Sbjct: 203 DHVGQKTLDLSGIEILVLDEADRMLDMGFIHDIRRILKLLPGKRQNLLFSATFS------ 256
Query: 376 VQNLLLGSINRLS---LNQSVA-------SQSACIIQSVNVCASDEEKILKGIQVLDHAY 425
I RLS LN V + S + QSV++ SD+++ L + H++
Sbjct: 257 ------DEIRRLSDGILNSPVQVEVAPRNTASELVRQSVHLVQSDQKRDLLSHLIRKHSW 310
>gi|332028589|gb|EGI68626.1| Putative ATP-dependent RNA helicase DDX43 [Acromyrmex echinatior]
Length = 660
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 14/203 (6%)
Query: 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
TGP +L + ++E A ++ GI V ++ G QI + + +++TP
Sbjct: 324 TGPNVLVMAPTRELALQIEKEVGKYSYHGIKAVCVYGGGNRKTQIDTVTKG-VQIVIATP 382
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KPHTVVFNDCLTYTSV 373
RL LV +DVS V+ L++D D + IR+++ G +P+ +T +
Sbjct: 383 GRLNDLVQANVLDVSAVTYLILDEADRMLDMGFEPQIRKTLLGVRPNRQT---VMTSATW 439
Query: 374 PAVQNLLLGSINRLSLNQSVASQSACIIQSVN---VCASDEEKILKGIQVLDHAYGDHFH 430
P L S + + V S + SV A+++EK + H +
Sbjct: 440 PQGVRRLAQSYMKNPIQVFVGSLDLAAVHSVTQRIYMANEDEKT-----DMMHQFFQEMG 494
Query: 431 SEPLKVLYIVGKDSKFQNLVSTL 453
+ KV+ GK SK ++ S L
Sbjct: 495 PQD-KVIVFFGKKSKVDDVSSDL 516
>gi|268323389|emb|CBH36977.1| probable ATP-dependent RNA helicase [uncultured archaeon]
Length = 392
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 22/133 (16%)
Query: 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSV 275
S KD++ + + S +A AAD I + EK TG L L ++E A +V +
Sbjct: 38 SGKDVIAEAATGS-----GKTLAFAADIIEKTEKG----TGIRTLVLTPTRELAQQVAAA 88
Query: 276 C------KPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVS 329
KPL+ V++ G +I+ QIT LR + +V TP R+L + + +++S
Sbjct: 89 LSLFSKYKPLR-----IVAVFGGVSINPQITQLRRAD--VVVGTPGRILDHIGRRTLNLS 141
Query: 330 GVSLLVVDRLDSL 342
V++LV+D D +
Sbjct: 142 KVNILVLDEADRM 154
>gi|170578156|ref|XP_001894291.1| DEAD/DEAH box helicase family protein [Brugia malayi]
gi|158599187|gb|EDP36872.1| DEAD/DEAH box helicase family protein [Brugia malayi]
Length = 599
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 7/164 (4%)
Query: 256 GPFLLFLVSSQEKAAKVRSV-CKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GPF +F+V S+E A + S+ CK + F +SL+ + G +P+F+VSTP
Sbjct: 149 GPFAVFIVPSKELAKQTYSLLCKLTEKFPF-LMSLNFAELNVNTDDGWLLKKPDFVVSTP 207
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGKPHTVVFNDCLTYT 371
RLL + V +V+D D S + + LI+ H +F
Sbjct: 208 GRLLHALKKYGKPCESVKHVVLDEADLLLSFGYAEEMRLIKNFFPAH-HQTIFTSATMTE 266
Query: 372 SVPAVQNLLL-GSINRLSLNQSVASQSACIIQSVNVCASDEEKI 414
+V A++ L + G I + L + S + Q C ++EE+
Sbjct: 267 NVEALKELYVTGPIVLMKLKEGQLPSSKQLSQYHISCQNEEERF 310
>gi|429736828|ref|ZP_19270704.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Selenomonas sp. oral taxon 138 str. F0429]
gi|429153808|gb|EKX96573.1| DEAD-box ATP-dependent RNA helicase CshA family protein
[Selenomonas sp. oral taxon 138 str. F0429]
Length = 421
Score = 45.1 bits (105), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L + ++E A ++ V +PL A GI T+ ++ GA I+ Q LR P+ ++ TP RLL
Sbjct: 74 LVIAPTRELAIQIARVAEPLGAELGIGTIVIYGGADIERQKEKLRR-HPQLVIGTPGRLL 132
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSK 344
V + + V+ +V+D D + K
Sbjct: 133 DHVRRGTLALGSVNKIVLDEADEMLK 158
>gi|392429044|ref|YP_006470055.1| ATP-dependent RNA helicase [Streptococcus intermedius JTH08]
gi|419776490|ref|ZP_14302412.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus intermedius SK54]
gi|383845901|gb|EID83301.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus intermedius SK54]
gi|391758190|dbj|BAM23807.1| ATP-dependent RNA helicase [Streptococcus intermedius JTH08]
Length = 514
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 7/118 (5%)
Query: 257 PFLLFLVSSQEKAAKVRS---VCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVST 313
PF+ LV + + V+S + + ++ G+ S++ G++I+ QI L+S +V T
Sbjct: 68 PFIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSG-AHIVVGT 126
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
P RLL L+ KA+ ++ V +L++D D + L I IS P T++F+ +
Sbjct: 127 PGRLLDLIKRKALKLNHVEILILDEADEMLNMGFLEDIEAIISRVPEERQTLLFSATM 184
>gi|311064761|ref|YP_003971486.1| ATP-dependent RNA helicase [Bifidobacterium bifidum PRL2010]
gi|310867080|gb|ADP36449.1| ATP-dependent RNA helicase [Bifidobacterium bifidum PRL2010]
Length = 681
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 240 AADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQ 298
A+D A +E+ S P L L ++E ++ V +PL +A+G+ TV+++ G + Q
Sbjct: 128 ASDEKAAREQA--SLPRPRGLVLAPTRELVNQIDEVIQPLAEAYGMSTVTVYGGVSYARQ 185
Query: 299 ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLS 343
+ GLR+ + +V+ P RL L+ + + V + ++D D ++
Sbjct: 186 VAGLRAGA-DIVVACPGRLEDLLRQGKLSLDAVEITILDEADEMA 229
>gi|269861317|ref|XP_002650370.1| protein translation initiation factor IF-4A [Enterocytozoon
bieneusi H348]
gi|220066201|gb|EED43695.1| protein translation initiation factor IF-4A [Enterocytozoon
bieneusi H348]
Length = 419
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L LVS++E A ++ + L K GI+T L G I L +V TP
Sbjct: 93 PQCLVLVSTREIARQIANTFIGLSKYMGINTYLLTGGCPRSEDIDQLTKNTYHIIVGTPG 152
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLI 351
R+ ++ KAI V+ + +L++D D L KG+ L+ I
Sbjct: 153 RVYDMLDSKAIKVNKIKILILDEADELCKGEFLNQI 188
>gi|424788171|ref|ZP_18214930.1| helicase conserved C-terminal domain protein [Streptococcus
intermedius BA1]
gi|422112935|gb|EKU16692.1| helicase conserved C-terminal domain protein [Streptococcus
intermedius BA1]
Length = 514
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 7/118 (5%)
Query: 257 PFLLFLVSSQEKAAKVRS---VCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVST 313
PF+ LV + + V+S + + ++ G+ S++ G++I+ QI L+S +V T
Sbjct: 68 PFIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSG-AHIVVGT 126
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
P RLL L+ KA+ ++ V +L++D D + L I IS P T++F+ +
Sbjct: 127 PGRLLDLIKRKALKLNHVEILILDEADEMLNMGFLEDIEAIISRVPEERQTLLFSATM 184
>gi|313682743|ref|YP_004060481.1| dead/deah box helicase domain-containing protein [Sulfuricurvum
kujiense DSM 16994]
gi|313155603|gb|ADR34281.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
16994]
Length = 431
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L ++E AA+V K K + + + G I+ QIT LR+ + L++TP RLL
Sbjct: 78 LILTPTRELAAQVGESVKLYGKYLPLKSAVIFGGVGINPQITMLRNGV-DILIATPGRLL 136
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
V +D+SGV + V+D D + + IR+ I+ P
Sbjct: 137 DHVGQGTVDLSGVEIFVLDEADRMLDMGFIRDIRRVITILP 177
>gi|312602490|ref|YP_004022335.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312169804|emb|CBW76816.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 630
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 14/159 (8%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 232 PALLVLTPTRELAMQVTTAAT---TYGKHLRRLRTVSILGGVAYGQQLM-LLAKNPEILV 287
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RL+ + ID+S + +LV+D D + + I I P T++F+ L
Sbjct: 288 ATPGRLIDHLERGRIDLSQLQMLVLDEADRMLDMGFIEDIEAIIDRTPATRQTLLFSATL 347
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC 407
V ++ L R+ + + S+ A I QSV+
Sbjct: 348 D-GKVGSLAQRFLSDAERIEIRREPESR-ANIAQSVHYV 384
>gi|156083018|ref|XP_001608993.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
containing protein [Babesia bovis T2Bo]
gi|154796243|gb|EDO05425.1| DEAD/DEAH box helicase and helicase conserved C-terminal domain
containing protein [Babesia bovis]
Length = 783
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Query: 250 EGFSFT-GPFLLFLVSSQEKAAKVRSVCKPLKAF-----GIHTVSLHPGAAIDHQITGLR 303
EG S T G L L+ ++E A +V SV K AF + + +L G +++ Q L
Sbjct: 86 EGHSRTVGVRCLILLPTRELALQVSSVLKKFIAFTKRDDALRSATLIGGESVEGQFGAL- 144
Query: 304 SCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
+ P+ +V+TP RL + ++ K+ID++ V+ V+D D L
Sbjct: 145 TFNPDLVVATPGRLSQHIAEKSIDLTLVTHFVIDEADKL 183
>gi|403057058|ref|YP_006645275.1| ATP-dependent RNA helicase [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402804384|gb|AFR02022.1| ATP-dependent RNA helicase [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 632
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 17/173 (9%)
Query: 173 DCPSKFLILCLN-AIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIV 231
D + F L LN +I NA+ G E+ +P+ E + +D+L + + S
Sbjct: 3 DLVTSFADLGLNTSILNALTDLGYEKPSPIQA-----ECIPHLLNGRDVLGMAQTGSG-- 55
Query: 232 QIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK--AFGIHTVSL 289
TAA S+ P +L L ++E A +V C G++ V+L
Sbjct: 56 ------KTAAFSLPLLNNLKPELKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVAL 109
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
+ G D Q+ LR + +V TP RLL + +D+S +S LV+D D +
Sbjct: 110 YGGQRYDVQLRALRGGA-QIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEM 161
>gi|392544413|ref|ZP_10291550.1| ATP-dependent RNA helicase, cold shock protein A [Pseudoalteromonas
piscicida JCM 20779]
Length = 607
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 253 SFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEFL 310
S P L L ++E A +V + + G+ ++L+ G + Q++ LR + +
Sbjct: 70 SVKQPQTLVLTPTRELAIQVAEAFQQYAKYTKGVEVLALYGGQSYGIQLSALRRG-AQII 128
Query: 311 VSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
V+TP RL+ ++ K ID+SG++ LV+D D +
Sbjct: 129 VATPGRLIDHINRKTIDLSGLNALVLDEADEM 160
>gi|392946401|ref|ZP_10312043.1| DNA/RNA helicase, superfamily II [Frankia sp. QA3]
gi|392289695|gb|EIV95719.1| DNA/RNA helicase, superfamily II [Frankia sp. QA3]
Length = 562
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 257 PFLLFLVSSQEKAAKVRS-VCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L +V ++E +V S V + G+ +S++ G A + Q+T LR+ + +V TP
Sbjct: 84 PQALIVVPTRELCVQVTSDVTRAGARRGLRVLSVYGGRAYEPQLTALRAGV-DIVVGTPG 142
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RLL L + +D++GV LV+D D +
Sbjct: 143 RLLDLARQRVLDLAGVRTLVLDEADEM 169
>gi|378731952|gb|EHY58411.1| ATP-dependent RNA helicase dhh1 [Exophiala dermatitidis NIH/UT8656]
Length = 506
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 70/175 (40%), Gaps = 24/175 (13%)
Query: 207 GIEFWKCYSSAK---DILETSGSSSTIVQIAWI-VATAADSIARKEKEGFSFTGPFL--- 259
G+EF Y + I E + +Q I VA I + K G T F+
Sbjct: 46 GLEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPT 105
Query: 260 -------------LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSC 305
L LV ++E A + VCK L K GI+ + G + I +R
Sbjct: 106 LERINPKNPKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLKDDI--IRLG 163
Query: 306 EP-EFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
EP +V TP R+L L S D+S + V+D D L + +I Q +S P
Sbjct: 164 EPVHIIVGTPGRILDLASKGVADLSECPIFVMDEADKLLSPEFTVVIEQLLSFLP 218
>gi|418274703|ref|ZP_12890201.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum NC8]
gi|376010269|gb|EHS83595.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 444
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 97/235 (41%), Gaps = 36/235 (15%)
Query: 219 DILETSGSSSTIVQIAWIVATAADSIARKEK----------EGFSFTGPFL--------- 259
D+ +T +++ +++ I A+ +A + + +FT P L
Sbjct: 3 DVFKTKFAAAGFTELSPIQTAVAEPLAAGQSVLGLAPTGSGKTLAFTWPMLEALRVGEGT 62
Query: 260 --LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L L SQE A + +V + + +++ GA + QI L+ PE +V TP R
Sbjct: 63 QALILAPSQELAMQTTNVVREWGQLIDAKVLAITGGANVKRQIEKLKK-HPEVIVGTPGR 121
Query: 317 LLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAV 376
+ L++ I + + +++VD D L +TL IR+ + F + L A
Sbjct: 122 ITNLIADGKIKLGHLKMMIVDEADELLTDETLDQIREILDA-----TFAETLQLGFFSAT 176
Query: 377 QNLLLGSINRL------SLNQSVASQSACIIQSVNVCASDEEKI--LKGIQVLDH 423
+ +L + R ++ Q+ +++ + + ++ LK I +DH
Sbjct: 177 ETKILDELPRWFGQHVEKIDVRAIDQTQGVVRHRTMQVGNRHRVDLLKRISRVDH 231
>gi|343500285|ref|ZP_08738181.1| ATP-dependent RNA helicase [Vibrio tubiashii ATCC 19109]
gi|418480788|ref|ZP_13049843.1| ATP-dependent RNA helicase [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342820664|gb|EGU55482.1| ATP-dependent RNA helicase [Vibrio tubiashii ATCC 19109]
gi|384571548|gb|EIF02079.1| ATP-dependent RNA helicase [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 447
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 100/239 (41%), Gaps = 25/239 (10%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYS----------SAKDILETS--GSSSTIVQI 233
+EN + + DN L N +F K + KD+L +S GS T+
Sbjct: 1 MENTLHFKDLGLDNRLLKNLKHFDFKKATEIQQRAIPVAIAGKDLLASSKTGSGKTL--- 57
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPG 292
A+++ S+ K FS P + L ++E A +V + L + G
Sbjct: 58 AFVLPMLHKSLKNK---AFSAKDPRAVILAPTRELAKQVYGELRSMLGGLSYDATLIVGG 114
Query: 293 AAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR 352
+ Q+ LR P+F+V+TP RL + +++ + G+ LV+D D + +R
Sbjct: 115 ENFNDQVKALRRY-PKFIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELR 173
Query: 353 QSISGKPH----TVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC 407
+ + H T++F+ L + V + +L + R+++ + + I Q +C
Sbjct: 174 RIHNAAKHRRRQTLMFSATLDHAEVNDIAMEMLDAPKRIAIG-AATEKHTDITQKFYLC 231
>gi|374603780|ref|ZP_09676754.1| ATP-dependent RNA helicase [Paenibacillus dendritiformis C454]
gi|374390505|gb|EHQ61853.1| ATP-dependent RNA helicase [Paenibacillus dendritiformis C454]
Length = 515
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 20/208 (9%)
Query: 260 LFLVSSQEKAAKVRSVCK------PLKAFGIHTVSLHPGAAIDHQITGLR-SCEPEFLVS 312
L + ++E A ++ + K P + GIH ++ + G ++ QI L+ +C+ ++
Sbjct: 68 LIVAPTRELALQITAEAKKLTDSAPDGSGGIHVLAAYGGQDVEKQIRKLQGACQ--LVIG 125
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTS 372
TP RL + D SG+ +LV+D D + L + I+ P + L +
Sbjct: 126 TPGRLTDHLRRGTFDGSGIRILVLDEADQMLHMGFLPEVEDVIAHTPSS--RQTLLCSAT 183
Query: 373 VPAVQNLLLGSINRLSLNQSVASQSACI--IQSVNVCASDEEKILKGIQVLDHAYGDHFH 430
+P L R L+ V ++ + I+ + V +D K ++LD +H
Sbjct: 184 MPEPVRALAARFMRSPLDIRVEAEQVTVKDIRQLVVETTDRAKQETLFRLLD----EH-- 237
Query: 431 SEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
P + + + Q L LK KGY
Sbjct: 238 -RPYQAVIFCRTKRRAQTLYEALKAKGY 264
>gi|348618460|ref|ZP_08884985.1| ATP-dependent RNA helicase rhlE [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816260|emb|CCD29732.1| ATP-dependent RNA helicase rhlE [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 455
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 14/157 (8%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFG-----IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
P LL L ++E A +V + +G + TVS+ G Q+ L +P+ +V
Sbjct: 111 PALLVLTPTRELALQVTHAAE---TYGKQLRRLRTVSVLGGVPYRKQLELLMR-QPDIVV 166
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RLL + ID+S +S+LV+D D + + IR I+ P T++F+ L
Sbjct: 167 ATPGRLLDHLERGRIDLSRLSMLVLDEADRMLDMGFIDAIRTIIAATPSSRQTLLFSATL 226
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVN 405
+ A+ L+ S R+ + + QS I QS++
Sbjct: 227 D-ARIGALTQRLMKSPERIEVTHRL-EQSGKIEQSIH 261
>gi|417322237|ref|ZP_12108771.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329]
gi|328470391|gb|EGF41302.1| putative ATP-dependent RNA helicase [Vibrio parahaemolyticus 10329]
Length = 416
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 15/131 (11%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRS-CEPEFLVS 312
L LV ++E A++V +K++ H TV++ G +++ Q+ LR C+ +V+
Sbjct: 87 LILVPTRELASQV---AYNVKSYSYHLRDKIKTVAVFGGVSVNPQMLALRGGCD--IIVA 141
Query: 313 TPERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLT 369
TP RLL LVS AI + V LV+ DR+ SL + L+ I + K T++F+
Sbjct: 142 TPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLPEKKQTLLFSATFP 201
Query: 370 YTSVPAVQNLL 380
Q+LL
Sbjct: 202 EKVTTLAQHLL 212
>gi|227327833|ref|ZP_03831857.1| ATP-dependent RNA helicase DeaD [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 635
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 17/173 (9%)
Query: 173 DCPSKFLILCLN-AIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIV 231
D + F L LN +I NA+ G E+ +P+ E + +D+L + + S
Sbjct: 3 DLVTSFADLGLNTSILNALTDLGYEKPSPIQA-----ECIPHLLNGRDVLGMAQTGSG-- 55
Query: 232 QIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK--AFGIHTVSL 289
TAA S+ P +L L ++E A +V C G++ V+L
Sbjct: 56 ------KTAAFSLPLLNNLKPELKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVAL 109
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
+ G D Q+ LR + +V TP RLL + +D+S +S LV+D D +
Sbjct: 110 YGGQRYDVQLRALRGGA-QIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEM 161
>gi|351729630|ref|ZP_08947321.1| dead/deah box helicase domain-containing protein [Acidovorax
radicis N35]
Length = 426
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 89/180 (49%), Gaps = 25/180 (13%)
Query: 260 LFLVSSQEKAAKVRSVCK--------PLKA---FGIHTVSLHPGAAIDHQITGLRSCEPE 308
L LV ++E AA+V V + PLK FG G +I+ Q+ GLR +
Sbjct: 77 LVLVPTRELAAQVGEVLRSLAQHLQQPLKVAIVFG--------GVSINPQMLGLRGGA-D 127
Query: 309 FLVSTPERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFN 365
+V+TP RLL LV A+ +S V+ LV+ DRL L + L+ + + + + F+
Sbjct: 128 IVVATPGRLLDLVEHNALRLSAVAHLVLDEADRLLDLGFAEELTRVLALLPAQRQNLFFS 187
Query: 366 DCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAY 425
+V A+ + LL + R+ + + ++ A +++ V A ++L+ + V +H++
Sbjct: 188 ATFP-AAVQALADGLLKNPVRVEVPHTPGNEPAIEQRAIAVDAVRRTQLLRHL-VKEHSW 245
>gi|253991496|ref|YP_003042852.1| cold-shock dead box protein A [Photorhabdus asymbiotica]
gi|211638374|emb|CAR66996.1| cold-shock dead box protein a (ec 3.6.1.-) (atp-dependent rna
helicas dead) [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782946|emb|CAQ86111.1| cold-shock dead box protein A [Photorhabdus asymbiotica]
Length = 635
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAID 296
TAA S+ P +L L ++E A +V C ++ V+L+ G D
Sbjct: 63 TAAFSLPLLHNINAELKAPQILVLAPTRELAVQVAEACADFSKHMRNVNVVALYGGQRYD 122
Query: 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
Q+ LR P+ +V TP RLL + +D+S +S LV+D D +
Sbjct: 123 VQLRALRQG-PQIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEM 167
>gi|427722229|ref|YP_007069506.1| DEAD/DEAH box helicase [Leptolyngbya sp. PCC 7376]
gi|427353949|gb|AFY36672.1| DEAD/DEAH box helicase domain protein [Leptolyngbya sp. PCC 7376]
Length = 430
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 256 GPFLLFLVSSQEKAAKV-RSVCKPLKAFGIHTVSLHPGAAIDHQITGL-RSCEPEFLVST 313
P L L ++E A +V SV K + V ++ G I QI GL R C+ +V+T
Sbjct: 74 APRALILTPTRELAIQVSESVNTYGKYLPLKPVVIYGGVNIKRQIQGLQRGCD--IVVAT 131
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ---SISGKPHTVVFNDCLTY 370
P RLL V K ID+S + + V+D D + + IR+ I G T++F+ +
Sbjct: 132 PGRLLDHVFQKTIDLSHIEIFVLDECDRMLDMGFIRDIRKIMAKIPGDRQTLMFSATFSQ 191
Query: 371 TSVPAVQNL 379
A+Q L
Sbjct: 192 ----AIQKL 196
>gi|414866472|tpg|DAA45029.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 766
Score = 45.1 bits (105), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 18/207 (8%)
Query: 216 SAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
S +DI+ +GS T + ++ D +++EG P + ++E A ++
Sbjct: 255 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEG-----PIGVICAPTRELAHQIY 309
Query: 274 SVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVSTPERLLKLVSLKAIDVSGV 331
K K + + +++ G + Q L++ CE +++TP RL+ L+ +KA+ +
Sbjct: 310 LEAKKFAKPYNLRVAAIYGGVSKFDQFKELKAGCE--IVIATPGRLIDLLKMKALKMFRA 367
Query: 332 SLLVVDRLDSLSKGDTLSLIRQSISG--KP--HTVVFNDCLTYTSVPAVQNLLLGSINRL 387
+ LV+D D + IR SI G +P T++F+ + Y + +L I R+
Sbjct: 368 TYLVLDEADRMFDLGFEPQIR-SIVGQIRPDRQTLLFSATMPYKVERLAREILTDPI-RV 425
Query: 388 SLNQSVASQSACIIQSVNVCASDEEKI 414
++ Q V + I Q VNV SD EK+
Sbjct: 426 TVGQ-VGGANEDIKQVVNVLPSDVEKM 451
>gi|386015150|ref|YP_005933429.1| putative ATP-dependent RNA helicase RhlE [Pantoea ananatis AJ13355]
gi|386080118|ref|YP_005993643.1| putative ATP-dependent RNA helicase RhlE [Pantoea ananatis PA13]
gi|327393211|dbj|BAK10633.1| putative ATP-dependent RNA helicase RhlE [Pantoea ananatis AJ13355]
gi|354989299|gb|AER33423.1| putative ATP-dependent RNA helicase RhlE [Pantoea ananatis PA13]
Length = 449
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 260 LFLVSSQEKAAKV-RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L ++E AA+V +V + K + ++ + G +I+ Q+ LR + LV+TP RLL
Sbjct: 79 LILTPTRELAAQVGENVVEYSKYLPLRSLVVFGGVSINPQMMKLRGGV-DILVATPGRLL 137
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
LV A+D+S V +LV+D D + + IR+ ++ P
Sbjct: 138 DLVHQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLAKLP 178
>gi|422320865|ref|ZP_16401920.1| ATP-dependent RNA helicase, partial [Achromobacter xylosoxidans
C54]
gi|317404315|gb|EFV84742.1| ATP-dependent RNA helicase [Achromobacter xylosoxidans C54]
Length = 413
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 10/91 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIHT----VSLHPGAAIDHQITGLRSCEP-EFLV 311
P L L ++E A+V + ++ +G HT + + G I+ QI+ LR +P + LV
Sbjct: 80 PRCLILTPTRELTAQV---AESVQTYGKHTSLTSMVMFGGVNINPQISALR--KPLDILV 134
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
+TP RLL K +D+SGV +LV+D D +
Sbjct: 135 ATPGRLLDHCGQKTVDLSGVEILVLDEADRM 165
>gi|406040161|ref|ZP_11047516.1| ATP-dependent RNA helicase RhlB [Acinetobacter ursingii DSM 16037 =
CIP 107286]
Length = 383
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 98/241 (40%), Gaps = 18/241 (7%)
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPG 292
A++V+ D + +E P L L ++E A ++ S K L F + ++L G
Sbjct: 56 AFLVSIINDLLNNPIQEQRYRGEPRALILAPTRELALQIESDAKELTKFTDLKLLTLVGG 115
Query: 293 AAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR 352
D Q L + + LV+TP RL+ + K I + + LV+D D L + ++
Sbjct: 116 VDFDKQKKPLNANFLDILVATPGRLIDFIEQKEIWLDQIEFLVIDEADRLLDMGFIPSVK 175
Query: 353 QSISGKP-----HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC 407
+ + P T++F+ +Y + + L + + + + + + V
Sbjct: 176 RIVRYSPRKEERQTLMFSATFSYDVLNLARQWLFEPVT-VEIEPEQKTNNDVEQRVYVVE 234
Query: 408 ASDEEKILKGIQVLDHAYGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNC 466
D+ ++L+ I EP+ KV+ + + + L LK GY + S
Sbjct: 235 KKDKYRLLQDI----------LRDEPIDKVMIFANRRDQVRRLYDHLKKDGYRVGMLSGE 284
Query: 467 I 467
I
Sbjct: 285 I 285
>gi|50305865|ref|XP_452893.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660558|sp|Q6CT46.1|DBP3_KLULA RecName: Full=ATP-dependent RNA helicase DBP3
gi|49642026|emb|CAH01744.1| KLLA0C15499p [Kluyveromyces lactis]
Length = 504
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 26/161 (16%)
Query: 228 STIVQIAWIVATAADSIARKEKEG----FSFTGPFLLFLVSSQEKAAKVRS-VCKPLK-- 280
+ I ++W A + + G F+F P + +V+S +K++ V+ V P +
Sbjct: 116 TPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTREL 175
Query: 281 -------------AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
A G+ + ++ G D Q LR + +V+TP RLL L+ ++D
Sbjct: 176 ASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQ--VVVATPGRLLDLIEEGSVD 233
Query: 328 VSGVSLLVVDRLDS-LSKG---DTLSLIRQSISGKPHTVVF 364
+S V+ LV+D D L KG D +IRQ+ S T++F
Sbjct: 234 LSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMF 274
>gi|431792618|ref|YP_007219523.1| DNA/RNA helicase [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430782844|gb|AGA68127.1| DNA/RNA helicase, superfamily II [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 500
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 9/124 (7%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
+ L ++E A +V + F GI T+ ++ G ID QI L+ P +V+TP RL+
Sbjct: 74 IVLTPTRELAVQVAEELNKIGQFKGIRTLPIYGGQEIDRQIRALKK-RPHIIVATPGRLM 132
Query: 319 KLVSLKAIDVSGVSLLVVDRLDS-LSKG--DTLSLIRQSISGKPHTVVFNDCLTYTSVPA 375
+ + I + ++++++D D L+ G + + I Q I T++F+ +
Sbjct: 133 DHMRRRTIRLQNINMVILDEADEMLNMGFVEDIETILQEIPEARQTLLFSATMPR----Q 188
Query: 376 VQNL 379
+QNL
Sbjct: 189 IQNL 192
>gi|384417512|ref|YP_005626872.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353460426|gb|AEQ94705.1| ATP-dependent RNA helicase [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 459
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 113/250 (45%), Gaps = 28/250 (11%)
Query: 187 ENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQIAWIVATAADSI 244
E+A+ GV P+ V +A+D++ T +GS T+ A+ + +
Sbjct: 47 ESALARAGVRTLTPIQVA-----MIPPMLAARDLIATAQTGSGKTL---AYALPLLQQRL 98
Query: 245 ARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF---GIHTVSLHPGAAIDHQITG 301
E+ G L LV ++E A+V L A G+ V+ G AI+ Q+
Sbjct: 99 QVPEQAPRVLGG---LILVPTRELVAQVAQTLLSLAAALPRGLKIVAATGGEAINPQLMA 155
Query: 302 LRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGK 358
LR + +++TP RLL LV+ A+ +S V LV+ DRL L G L I + +
Sbjct: 156 LRGGA-DIVIATPGRLLDLVTHNALRLSQVRTLVLDEADRLLDLGFGAELDRILALLPAQ 214
Query: 359 PHTVVFNDCLTYTSVPAVQNLL---LGSINRLSLNQSVASQSACIIQSVNVCASDEEKIL 415
+V+ ++ T PA+ +L L R++++ + A ++ V A ++L
Sbjct: 215 RQSVL----VSATFPPAIASLAKRRLRDPLRITIDATPEHAPAIAQHAIAVDAGQRTQLL 270
Query: 416 KGIQVLDHAY 425
+ + + +HA+
Sbjct: 271 RHL-LQEHAW 279
>gi|417992623|ref|ZP_12632977.1| ATP-dependent RNA helicase [Lactobacillus casei CRF28]
gi|410532990|gb|EKQ07681.1| ATP-dependent RNA helicase [Lactobacillus casei CRF28]
Length = 226
Score = 45.1 bits (105), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L SQE A + R V P K GI + A + Q+ L+ +PE +V+T RL
Sbjct: 66 LLILAPSQELAIQTRDVLTPYAKDIGITVQGVIGSANVKRQLDRLKE-KPEVIVATAGRL 124
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ 353
L+L+ + + + G+ LVVD D + + +R+
Sbjct: 125 LELIQSRKLKLDGLQTLVVDEADEMLRDPGFDQVRE 160
>gi|253686992|ref|YP_003016182.1| DEAD/DEAH box helicase domain-containing protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251753570|gb|ACT11646.1| DEAD/DEAH box helicase domain protein [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 625
Score = 45.1 bits (105), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 17/173 (9%)
Query: 173 DCPSKFLILCLN-AIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIV 231
D + F L LN +I NA+ G E+ +P+ E + +D+L + + S
Sbjct: 3 DLVTSFADLGLNTSILNALTDLGYEKPSPIQA-----ECIPHLLNGRDVLGMAQTGSG-- 55
Query: 232 QIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK--AFGIHTVSL 289
TAA S+ P +L L ++E A +V C G++ V+L
Sbjct: 56 ------KTAAFSLPLLNNLKPELKAPQILVLAPTRELAVQVAEACNDFSKHMHGVNVVAL 109
Query: 290 HPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
+ G D Q+ LR + +V TP RLL + +D+S +S LV+D D +
Sbjct: 110 YGGQRYDVQLRALRQGA-QIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEM 161
>gi|119945261|ref|YP_942941.1| ATP-dependent RNA helicase [Psychromonas ingrahamii 37]
gi|119863865|gb|ABM03342.1| ATP-dependent RNA helicase, DEAD box family protein [Psychromonas
ingrahamii 37]
Length = 441
Score = 45.1 bits (105), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 243 SIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF---GIHTVSLHPGAAIDHQI 299
+++ K +EG G L LV ++E A +V K A I TV++ G + + Q+
Sbjct: 87 TLSSKNREGNYVAG---LILVPTRELAKQVADSIKSYAAHFNGAIKTVAVFGGVSANTQM 143
Query: 300 TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
LR + LV+TP RLL L+S AI + V LV+D D +
Sbjct: 144 LALRGGT-DILVATPGRLLDLISSNAIKLDRVKTLVLDEADRM 185
>gi|400290741|ref|ZP_10792768.1| ATP-dependent RNA helicase [Streptococcus ratti FA-1 = DSM 20564]
gi|399921532|gb|EJN94349.1| ATP-dependent RNA helicase [Streptococcus ratti FA-1 = DSM 20564]
Length = 517
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 29/145 (20%)
Query: 227 SSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHT 286
+S +VQ A ++A + + ++E F F +EK KVRSV
Sbjct: 66 ASNLVQ-ALVIAPTRELAVQSQEELFRF----------GREKGVKVRSV----------- 103
Query: 287 VSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGD 346
+ G++I+ QI L+S +V TP RLL L+ KA+ ++ V L++D D +
Sbjct: 104 ---YGGSSIEKQIKALKSG-AHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMG 159
Query: 347 TLSLIRQSISGKP---HTVVFNDCL 368
L I IS P T++F+ +
Sbjct: 160 FLEDIEAIISRVPESRQTLLFSATM 184
>gi|341820370|emb|CCC56639.1| ATP-dependent RNA helicase [Weissella thailandensis fsh4-2]
Length = 436
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
G LL L SQE A + V + + +SL GA I HQ+ L+ PE L+ TP
Sbjct: 61 GEQLLILAPSQELAMQTTRVVRDWANVLSLKVLSLTGGANIKHQLDRLKK-HPEILIGTP 119
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLI 351
R+ +L++ + + + L++D D L + DT + I
Sbjct: 120 GRVSELINNGKLKLKRLRTLILDEADELLRDDTANQI 156
>gi|407068293|ref|ZP_11099131.1| ATP-dependent RNA helicase [Vibrio cyclitrophicus ZF14]
Length = 428
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 13/115 (11%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A + V +K++ +H TV + G +++ Q+ LR + LV+T
Sbjct: 89 LILVPTRELA---KQVADSVKSYAVHFNGAIKTVCVFGGVSVNTQMQALRGGT-DILVAT 144
Query: 314 PERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFN 365
P RLL L+S AI + LV+ DR+ SL + L I + + K T++F+
Sbjct: 145 PGRLLDLISSNAIKLDKAKTLVLDEADRMLSLGFTEELDAILKLLPSKKQTLLFS 199
>gi|423687836|ref|ZP_17662639.1| ATP-dependent RNA helicase [Vibrio fischeri SR5]
gi|371493024|gb|EHN68628.1| ATP-dependent RNA helicase [Vibrio fischeri SR5]
Length = 445
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 94/199 (47%), Gaps = 15/199 (7%)
Query: 216 SAKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
+ KD+L +S GS T+ A+++ S+ K FS P + L ++E A +V
Sbjct: 37 AGKDVLASSKTGSGKTL---AFVLPMLHKSLKTK---SFSKNDPRAVILAPTRELAKQVY 90
Query: 274 SVCKPLKAFGIHTVSLHPGAA-IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332
S + + + +L G + Q+ LR P+F+V+TP RL + +++ + G+
Sbjct: 91 SHLRAMLGGLTYDATLITGGENFNDQVNALRK-HPKFIVATPGRLADHLEHQSLYLDGLE 149
Query: 333 LLVV---DRLDSLSKGDTLSLIRQSISG-KPHTVVFNDCLTYTSVPAVQNLLLGSINRLS 388
L++ DR+ L + L I ++ S + T++F+ L + +V +L + R+S
Sbjct: 150 TLILDEADRMLDLGFAEHLQKIHKAASHRRRQTLMFSATLDHDAVNKFAGNMLDNPKRIS 209
Query: 389 LNQSVASQSACIIQSVNVC 407
+ S + I Q +C
Sbjct: 210 VGLS-NDEHKDITQRFYLC 227
>gi|323526518|ref|YP_004228671.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323383520|gb|ADX55611.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 536
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 18/175 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P +L L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 140 PTMLVLTPTRELAMQVTTAAA---TYGKHLKRLRTVSILGGVAYGQQLM-LLAKNPEILV 195
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
+TP RL+ + ID+S + +LV+D D + + I ++ P T++F+ L
Sbjct: 196 ATPGRLIDHLERGRIDMSQLQILVLDEADRMLDMGFIDDIDTIVAATPATRQTMLFSATL 255
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDH 423
+ ++ LL R+ + Q + Q I Q+V+ + K ++LDH
Sbjct: 256 D-GKIGSLTGRLLKDPERIEIVQRM-EQRTNIAQTVHYVDDRDHK----DRLLDH 304
>gi|156976352|ref|YP_001447258.1| ATP-dependent RNA helicase [Vibrio harveyi ATCC BAA-1116]
gi|156527946|gb|ABU73031.1| hypothetical protein VIBHAR_05125 [Vibrio harveyi ATCC BAA-1116]
Length = 447
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 103/239 (43%), Gaps = 25/239 (10%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYS----------SAKDILETS--GSSSTIVQI 233
+EN ++ + DN L N +F K + KD+L +S GS T+
Sbjct: 1 MENTLQFKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTL--- 57
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293
A+++ S+ K FS P + L ++E A +V + + + +L G
Sbjct: 58 AFVLPMLHKSLKTK---SFSAKDPRAVILAPTRELAKQVYGELRSMLGGLTYDAALILGG 114
Query: 294 A-IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR 352
+ Q+ LR P+F+V+TP RL + +++ + G+ LV+D D + +R
Sbjct: 115 ENFNDQVKALRRY-PKFIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELR 173
Query: 353 QSISGKPH----TVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC 407
+ H T++F+ L + V + + +L + R+++ S + I Q +C
Sbjct: 174 RIHKAAKHRRRQTLMFSATLDHAEVNDIASEMLNAPKRIAIGVS-NEEHKDITQKFYLC 231
>gi|153874150|ref|ZP_02002476.1| ATP-dependent RNA helicase RhlE [Beggiatoa sp. PS]
gi|152069386|gb|EDN67524.1| ATP-dependent RNA helicase RhlE [Beggiatoa sp. PS]
Length = 441
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 257 PFLLFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVS 312
P +L L ++E A ++ R+ K L+ F + V G + Q+ L S + +V+
Sbjct: 77 PSVLVLTPTRELANQISQAIRNYGKNLRFFSTNLVG---GMPYEPQLRAL-SRPIDIVVA 132
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
TP RLL LV + ID+SGV++LV+D D +
Sbjct: 133 TPGRLLDLVERRNIDLSGVNMLVLDEADRM 162
>gi|282599579|ref|ZP_05971084.2| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541]
gi|282568585|gb|EFB74120.1| ATP-dependent RNA helicase RhlE [Providencia rustigianii DSM 4541]
Length = 457
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L ++E AA+V K + I + + G +I+ Q+ LRS + L++TP RLL
Sbjct: 87 LILTPTRELAAQVAENVKEYSRHLNIRSFVVFGGVSINPQMMKLRSGV-DVLIATPGRLL 145
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
L A+D+S V +LV+D D + + IR+ I+ P
Sbjct: 146 DLEHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVITKLP 186
>gi|423206263|ref|ZP_17192819.1| hypothetical protein HMPREF1168_02454 [Aeromonas veronii AMC34]
gi|404621815|gb|EKB18680.1| hypothetical protein HMPREF1168_02454 [Aeromonas veronii AMC34]
Length = 633
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
+L L ++E A +V C+ + H + ++ GA+ + Q LR + +V TP R
Sbjct: 79 ILVLAPTRELALQVAEACQRYAHYMPDFHVLPIYGGASYETQTRALRRGA-QVVVGTPGR 137
Query: 317 LLKLVSLKAIDVSGVSLLVVDRLDSL 342
++ L+ K +D+SG+ LV+D D +
Sbjct: 138 VMDLIRRKNLDLSGLKALVLDEADEM 163
>gi|322387969|ref|ZP_08061576.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
infantis ATCC 700779]
gi|419842798|ref|ZP_14366131.1| DEAD/DEAH box helicase [Streptococcus infantis ATCC 700779]
gi|321141242|gb|EFX36740.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
infantis ATCC 700779]
gi|385703475|gb|EIG40592.1| DEAD/DEAH box helicase [Streptococcus infantis ATCC 700779]
Length = 360
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ V K +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFEVTKTWGEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+LV LK I + V +++D D L + + + + P H +++ T
Sbjct: 127 FELVKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITNYAPRDHQLIYMSATT 180
>gi|414071139|ref|ZP_11407113.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. Bsw20308]
gi|410806418|gb|EKS12410.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. Bsw20308]
Length = 433
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKA---FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E A +V K A I V++ G +++ Q+ LR + +V+TP R
Sbjct: 89 LILVPTRELATQVADSVKSYSANFNGAIKIVAVFGGVSVNTQMQALRGGA-DIIVATPGR 147
Query: 317 LLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFN 365
LL L+S AI + V+ LV+ DR+ SL + L+ + + K T++F+
Sbjct: 148 LLDLISSNAIKLDNVTTLVLDEADRMLSLGFTEELADLLALMPAKKQTMLFS 199
>gi|50084496|ref|YP_046006.1| ATP-dependent RNA helicase RhlB [Acinetobacter sp. ADP1]
gi|49530472|emb|CAG68184.1| ATP-dependent RNA helicase (DEAD box) [Acinetobacter sp. ADP1]
Length = 383
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 88/215 (40%), Gaps = 18/215 (8%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L ++E A ++ S + L F ++ ++L G D Q L + LV+TP RL+
Sbjct: 82 LILAPTRELALQIESDARELTRFTDLNVLTLVGGVDFDKQKKPLNEKFIDILVATPGRLI 141
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP-----HTVVFNDCLTYTSV 373
V K + + + LV+D D L + +++ + P T++F+ +Y +
Sbjct: 142 DFVEQKEVWLDQIEFLVIDEADRLLDMGFIPSVKRIVRFSPRKEQRQTLMFSATFSYDVL 201
Query: 374 PAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEP 433
+ L + + + + + + V D+ ++L+ I EP
Sbjct: 202 NLARQWLFEPVT-VEIEPEQKTNNDVEQRVYMVAKQDKYRLLQDI----------LRDEP 250
Query: 434 L-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
+ KV+ + + + L LK GY + S I
Sbjct: 251 IDKVMIFANRRDQVRRLYDHLKKDGYKVGMLSGEI 285
>gi|408355702|ref|YP_006844233.1| ATP-dependent RNA helicase [Amphibacillus xylanus NBRC 15112]
gi|407726473|dbj|BAM46471.1| ATP-dependent RNA helicase [Amphibacillus xylanus NBRC 15112]
Length = 483
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L + ++E A +V + F GI ++ ++ G + QI L+ P +V+TP RLL
Sbjct: 74 LVVAPTRELAIQVSEEIHRIGKFKGIRSLPIYGGQQMQRQIRSLKEG-PHIVVATPGRLL 132
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPH---TVVFNDCL 368
+ K I++S V +V+D D + + IR+ + PH T++F+ +
Sbjct: 133 DHMRRKTINISDVKTIVLDEADEMLNMGFIDDIREILKMIPHERQTLLFSATM 185
>gi|359432081|ref|ZP_09222474.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20652]
gi|357921173|dbj|GAA58723.1| ATP-dependent RNA helicase rhlE [Pseudoalteromonas sp. BSi20652]
Length = 422
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKA---FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E A +V K A I TV++ G +++ + LR + +V+TP R
Sbjct: 89 LILVPTRELATQVADSVKSYSANFNGAIKTVAVFGGVSVNTHMQALRGGA-DIIVATPGR 147
Query: 317 LLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSV 373
LL L+S AI + V+ LV+ DR+ SL + L+ + + K T++F+
Sbjct: 148 LLDLISSNAIKLDKVNTLVLDEADRMLSLGFTEELANLLALMPAKKQTMLFSATFPEQVT 207
Query: 374 PAVQNLL 380
Q LL
Sbjct: 208 QLTQELL 214
>gi|300779372|ref|ZP_07089230.1| DEAD/DEAH box family ATP-dependent RNA helicase [Chryseobacterium
gleum ATCC 35910]
gi|300504882|gb|EFK36022.1| DEAD/DEAH box family ATP-dependent RNA helicase [Chryseobacterium
gleum ATCC 35910]
Length = 562
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 15/119 (12%)
Query: 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-L 342
I T +++ G++I Q+ L+ +P+ +V TP R++ L++ KA+D S + LV+D D L
Sbjct: 101 IKTTAVYGGSSIVEQMRSLKD-KPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEML 159
Query: 343 SKG--DTLSLIRQSISGKPHTVVFNDCL---------TYTSVPAVQNLLLGSINRLSLN 390
S G D L I T +F+ + Y + P + +GSIN + N
Sbjct: 160 SMGFKDELETILSETPETKQTFLFSATMNKEVERISKNYLTKP--HRISVGSINEVKKN 216
>gi|451970467|ref|ZP_21923693.1| dead/deah box helicase domain protein [Vibrio alginolyticus E0666]
gi|451933553|gb|EMD81221.1| dead/deah box helicase domain protein [Vibrio alginolyticus E0666]
Length = 416
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 16/156 (10%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRS-CEPEFLVS 312
L LV ++E A++V +K++ H TV++ G +++ Q+ LR C+ +V+
Sbjct: 87 LILVPTRELASQV---AYNVKSYSYHLRDKIKTVAVFGGVSVNPQMLALRGGCD--IIVA 141
Query: 313 TPERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLT 369
TP RLL LVS AI + V LV+ DR+ SL + L+ I + K T++F+
Sbjct: 142 TPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLPEKKQTLLFSATFP 201
Query: 370 YTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVN 405
Q+LL + + L + AS + SVN
Sbjct: 202 DKVTTLAQHLLRDPVE-VQLQSAEASTLVQRVFSVN 236
>gi|403346217|gb|EJY72497.1| putative ATP-dependent RNA helicase [Oxytricha trifallax]
Length = 422
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEP-EFLVSTPER 316
L L ++E A ++++ + I T ++ G I QI L+ +P +V TP R
Sbjct: 112 LILCHTRELAYQIKNEFARFTRYLPDIRTEVIYGGQPIQDQIQMLKGVKPPHIVVGTPGR 171
Query: 317 LLKLVSLKAIDVSGVSLLVVDRLDS-LSKGDTLSLIRQSISGKPH 360
+ LV+ K +D+SG+ + V+D D L + D S ++Q PH
Sbjct: 172 IKHLVNKKDLDLSGLKIFVLDECDKMLEETDMRSDVQQIFMATPH 216
>gi|378550132|ref|ZP_09825348.1| hypothetical protein CCH26_08591, partial [Citricoccus sp. CH26A]
Length = 512
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E A ++ +PL A G+ ++++ G + Q+ L+ + LV+ P
Sbjct: 90 PRSLVLAPTRELALQLAESFEPLGAHTGLSSLTIFGGVGQNPQVKALQRGV-DVLVACPG 148
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ 353
RLL L+ +D+SGV +L++D D ++ L ++R+
Sbjct: 149 RLLDLMGQGHVDLSGVEVLIIDEADHMADMGFLPMVRK 186
>gi|345481282|ref|XP_001602397.2| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Nasonia
vitripennis]
Length = 698
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 111/279 (39%), Gaps = 35/279 (12%)
Query: 190 MRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL---ETSGSSSTIVQIAWIVATAADSIAR 246
+R E+ +P+ +W I S KD++ +T + + ++ R
Sbjct: 272 IRKQNFEKPSPIQCQAWPILL-----SGKDMIGIAQTGTGKTLAFLLPALIHIDNQDTPR 326
Query: 247 KEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCE 306
E+ +GP +L + ++E A ++ GI V ++ G Q+ + S
Sbjct: 327 SER-----SGPTVLVMAPTRELALQIEKEVNKYYYHGIKAVCVYGGGDRKKQMN-IVSKG 380
Query: 307 PEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KPHTVVFN 365
E +++TP RL L+ + +DV VS LV+D D + IR+S+ +P
Sbjct: 381 VEIVIATPGRLNDLIQTEVLDVKCVSYLVLDEADRMLDMGFEPQIRKSLLDIRPDRQT-- 438
Query: 366 DCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVN--VCASDEEK---ILKGIQV 420
+T + P L S + + V S + SV + DEE+ +LK
Sbjct: 439 -VMTSATWPPGVRRLAESYMKSPITVCVGSLDLKAVHSVTQKIWIVDEEEKTDVLK---- 493
Query: 421 LDHAYGDHFH--SEPLKVLYIVGKDSKFQNLVSTLKCKG 457
D FH + KV+ GK K ++ S L G
Sbjct: 494 ------DFFHNMAPSDKVIVFFGKKCKVDDIGSDLALSG 526
>gi|114563875|ref|YP_751389.1| DEAD/DEAH box helicase [Shewanella frigidimarina NCIMB 400]
gi|114335168|gb|ABI72550.1| DEAD/DEAH box helicase domain protein [Shewanella frigidimarina
NCIMB 400]
Length = 428
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 98/209 (46%), Gaps = 25/209 (11%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A + V K++ +H V+ G +++ Q+ LR + +V+T
Sbjct: 87 LVLVPTRELA---KQVADSFKSYAVHLNGDIKVVAAFGGVSVNTQMLALRGGA-DVVVAT 142
Query: 314 PERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTY 370
P RLL LVS A+ +S V+ LV+ DR+ SL + L+ + + + T++F+
Sbjct: 143 PGRLLDLVSSNALKLSQVTTLVLDEADRMLSLGFTEELTQVLNLLPKQKQTLLFSATFPD 202
Query: 371 TSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFH 430
Q LL +N L + Q +++++ ++Q V +++ L L H H
Sbjct: 203 EVRQLTQALL---VNPLEI-QLQSAEASTLVQRVMTVNREKKTAL-----LAHLLQQH-- 251
Query: 431 SEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459
+ +VL VG + +L L +G +
Sbjct: 252 -QWRQVLIFVGAKNSCNHLAQKLAKRGIT 279
>gi|406037586|ref|ZP_11044950.1| ATP-dependent RNA helicase RhlB [Acinetobacter parvus DSM 16617 =
CIP 108168]
Length = 383
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 90/222 (40%), Gaps = 19/222 (8%)
Query: 254 FTG-PFLLFLVSSQEKAAKVRSVCKPLKAFG-IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
F G P L L ++E A ++ S + L F +H V+L G D Q L + +V
Sbjct: 75 FRGEPRALILAPTRELALQIESDAQALTKFSNLHVVTLLGGVDFDKQKKMLDKNFVDIIV 134
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ-----SISGKPHTVVFND 366
+TP RL+ V K + + + LV+D D L + +++ S + T++F+
Sbjct: 135 ATPGRLIDFVEQKEVWLDKIEFLVIDEADRLLDMGFIPSVKRIVRYSSFKEQRQTLMFSA 194
Query: 367 CLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYG 426
+Y + + L + + + + + V D+ K+L+ I
Sbjct: 195 TFSYDVLNLARQWLFEPV-MVEIEPEQKTNVDVEQRVYMVEKKDKYKLLQEI-------- 245
Query: 427 DHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTGSNCI 467
EP+ KV+ + + + L LK GY + S I
Sbjct: 246 --LRDEPIDKVMIFANRRDQVRRLYDHLKRDGYKVGMLSGEI 285
>gi|343506970|ref|ZP_08744423.1| DNA and RNA helicase [Vibrio ichthyoenteri ATCC 700023]
gi|342800872|gb|EGU36376.1| DNA and RNA helicase [Vibrio ichthyoenteri ATCC 700023]
Length = 408
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 260 LFLVSSQEKAAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
+ LV ++E A +V ++ +P K I ++ + G + QI L+ PE +V+TP RLL
Sbjct: 72 VILVPTRELAMQVNDALVEPAKGLNIRSLVVCGGVDKESQIKALQ-LNPEIIVATPGRLL 130
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCL 368
L++ + D + ++ LV+D D L + +++ ++ P T++F+ L
Sbjct: 131 DLLNEEQFDAASITTLVLDEADRLVDMGFWNDVQKIVAYTPVTRQTMLFSATL 183
>gi|384228359|ref|YP_005620094.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Ua
(Uroleucon ambrosiae)]
gi|345539292|gb|AEO08159.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Ua
(Uroleucon ambrosiae)]
Length = 602
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAID 296
TAA ++ + T P +L L ++E A +V + GI+ + L+ G D
Sbjct: 57 TAAFALPLLHNLNINLTAPQILVLAPTRELAVQVAEAFSDFSKYMIGINVLPLYGGQRYD 116
Query: 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKG---DTLSLIRQ 353
Q+ LR P+ +V TP RLL + +++S + LV+D D + + + + I
Sbjct: 117 LQLRALRQG-PQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMT 175
Query: 354 SISGKPHTVVFNDCL 368
I K T +F+ +
Sbjct: 176 KIPKKHQTALFSATM 190
>gi|417837191|ref|ZP_12483430.1| ATP-dependent RNA helicase YfmL [Lactobacillus johnsonii pf01]
gi|338762386|gb|EGP13654.1| ATP-dependent RNA helicase YfmL [Lactobacillus johnsonii pf01]
Length = 409
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
+ L + E A + R+ P K+ G+ T++L Q+ L+ +PE +++TP R
Sbjct: 65 IILEPTTELAIQTRNNLLPYAKSLGLKTIALVGAGNRKRQLERLKKEKPEIIIATPGRFF 124
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL---SKGDTLSLIRQSISGKPHTVVF 364
+S I ++ LV+D D + +K D LS + Q++S ++F
Sbjct: 125 DFLSENRIKYQDINALVIDEADDILEFTKLDLLSSLGQNLSSTAQILLF 173
>gi|255534825|ref|YP_003095196.1| ATP-dependent RNA helicase [Flavobacteriaceae bacterium 3519-10]
gi|255341021|gb|ACU07134.1| possible ATP-dependent RNA helicase [Flavobacteriaceae bacterium
3519-10]
Length = 380
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD--- 340
I T++++ G +I+ Q+ G+ E LV+TP RLL L+ KA+ +S ++ LV+D D
Sbjct: 104 IRTMAVYGGVSINPQMKGMLGVE--VLVATPGRLLDLIDHKALSISQITHLVIDEADKMF 161
Query: 341 SLSKGDTLSLIRQSISGKPHTVVFNDCL 368
L + ++ + + K TV+F+ L
Sbjct: 162 QLGFEEEMNTLFAMMPPKKQTVLFSATL 189
>gi|399047526|ref|ZP_10739540.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
gi|398054666|gb|EJL46780.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
Length = 540
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L L ++E A ++ + + L A +H ++++ G +D Q+ L + + + +++TP RL
Sbjct: 79 LILTPTRELALQITAEVQKLTAAVDEVHVLAVYGGQDVDRQLRKL-AGKKQVVIATPGRL 137
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCLTYTSVP 374
L + ID+S VS+LV+D D + L + ++ P T++F+ +T P
Sbjct: 138 LDHIRRGTIDLSTVSMLVLDEADQMLHMGFLPEVEDILAQTPADRQTMLFSATMT----P 193
Query: 375 AVQNL 379
V+ L
Sbjct: 194 QVRAL 198
>gi|387130194|ref|YP_006293084.1| ATP-dependent RNA helicase SrmB [Methylophaga sp. JAM7]
gi|386271483|gb|AFJ02397.1| ATP-dependent RNA helicase SrmB [Methylophaga sp. JAM7]
Length = 410
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 6/160 (3%)
Query: 258 FLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
FL+F ++E A +++ V L AF L GA+ Q+ + + +++TP R
Sbjct: 82 FLIF-APTRELAFQIQHVFHQLGSAFKPIITMLTGGASPWAQVQHAETAGADIIIATPGR 140
Query: 317 LLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSIS--GKPHTV-VFNDCLTYTSV 373
+L LV+ +ID++G+ ++V+D D + + S++ G P +F+ L + V
Sbjct: 141 ILSLVNSHSIDLTGIEMVVIDEADRMLDMGQGPDVLHSLAKIGHPFQAGLFSATLAGSGV 200
Query: 374 PAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEK 413
LL + L Q+ Q+ + Q V +C + E K
Sbjct: 201 RLFAESLLKDPQEILL-QAANQQAQNVTQEVYLCDNQEHK 239
>gi|410692356|ref|YP_003622977.1| ATP-dependent RNA helicase [Thiomonas sp. 3As]
gi|294338780|emb|CAZ87114.1| ATP-dependent RNA helicase [Thiomonas sp. 3As]
Length = 533
Score = 44.7 bits (104), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFG----IHTVSLHPGAAIDHQITGLRSCEPEFLVS 312
P L L ++E AA+V + L A+G +H+++++ G + QI L + +V+
Sbjct: 78 PRALILTPTRELAAQVH---ENLAAYGRHLKLHSMAMYGGVGMQPQINALARGM-DIVVA 133
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
TP RLL S + ID+S V +LV+D D +
Sbjct: 134 TPGRLLDHQSQRNIDLSAVQMLVLDEADRM 163
>gi|433546496|ref|ZP_20502815.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
gi|432182213|gb|ELK39795.1| ATP-dependent RNA helicase [Brevibacillus agri BAB-2500]
Length = 540
Score = 44.7 bits (104), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L L ++E A ++ + + L A +H ++++ G +D Q+ L + + + +++TP RL
Sbjct: 79 LILTPTRELALQITAEVQKLTAAVDEVHVLAVYGGQDVDRQLRKL-AGKKQVVIATPGRL 137
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFNDCLTYTSVP 374
L + ID+S VS+LV+D D + L + ++ P T++F+ +T P
Sbjct: 138 LDHIRRGTIDLSTVSMLVLDEADQMLHMGFLPEVEDILAQTPADRQTMLFSATMT----P 193
Query: 375 AVQNL 379
V+ L
Sbjct: 194 QVRAL 198
>gi|398832639|ref|ZP_10590796.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
gi|398222976|gb|EJN09332.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
Length = 502
Score = 44.7 bits (104), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 6/131 (4%)
Query: 243 SIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQIT 300
S +R E+ F+ P +L L ++E A +V + ++ + VS+ G Q+
Sbjct: 86 SRSRGERPRFTPAQPKMLVLTPTRELALQVTTATDKYGSYMRRVRVVSILGGMPYPKQMQ 145
Query: 301 GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP- 359
L S PE LV+TP RL+ + ID S + +LV+D D + + I + ++ P
Sbjct: 146 -LLSKNPEILVATPGRLIDHMESGKIDFSQLQILVLDEADRMLDMGFIDDIEKIVAATPD 204
Query: 360 --HTVVFNDCL 368
T++F+ L
Sbjct: 205 TRQTMLFSATL 215
>gi|422821428|ref|ZP_16869621.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK353]
gi|324990856|gb|EGC22791.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK353]
Length = 363
Score = 44.7 bits (104), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK + G+ L G++ QI L+ PE ++ TP R+
Sbjct: 70 LLILAPNTELAGQIFEVCKTWAEPLGLTAQLLLSGSSQKRQIERLKKG-PEIIIGTPGRI 128
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSL 342
+L+ LK I + V +++D D L
Sbjct: 129 FELIKLKKIKMMNVETIILDEFDQL 153
>gi|262372452|ref|ZP_06065731.1| superfamily II DNA and RNA helicase [Acinetobacter junii SH205]
gi|262312477|gb|EEY93562.1| superfamily II DNA and RNA helicase [Acinetobacter junii SH205]
Length = 383
Score = 44.7 bits (104), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 102/244 (41%), Gaps = 24/244 (9%)
Query: 234 AWIVATAADSIARKEKEGFSFTG-PFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHP 291
A++++ D + +E F G P L L ++E A ++ S + L F +H V+L
Sbjct: 56 AFLISVINDLLTNPVQEQ-RFRGEPRALILAPTRELALQIESDAQHLTKFTDLHLVTLLG 114
Query: 292 GAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLI 351
G + Q L + +V+TP RL+ V K + + + LV+D D L + +
Sbjct: 115 GVDFEKQKKMLDRNFVDIIVATPGRLIDFVEQKEVWLDKIEFLVIDEADRLLDMGFIPSV 174
Query: 352 RQSISGKP-----HTVVFNDCLTYTSVPAVQNLLLGSIN-RLSLNQSVASQSACIIQSVN 405
++ + P T++F+ +Y + + L + + Q + + Q V
Sbjct: 175 KRIVRFSPFKEQRQTLMFSATFSYDVLNLARQWLFEPVTVEIEPEQKTNND---VEQRVY 231
Query: 406 VCAS-DEEKILKGIQVLDHAYGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSISTG 463
V + D+ K+L+ I EP+ KV+ + + + L LK GY +
Sbjct: 232 VVENKDKYKLLQEI----------LREEPIDKVMIFANRRDQVRRLYDHLKRDGYKVGML 281
Query: 464 SNCI 467
S I
Sbjct: 282 SGEI 285
>gi|210631565|ref|ZP_03296936.1| hypothetical protein COLSTE_00821, partial [Collinsella stercoris
DSM 13279]
gi|210160006|gb|EEA90977.1| DEAD/DEAH box helicase, partial [Collinsella stercoris DSM 13279]
Length = 595
Score = 44.7 bits (104), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 7/130 (5%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGL-RSCEPEFLVST 313
GP +L + ++E A ++ VC+ + K G +V++ G + + Q L R C+ L++T
Sbjct: 117 GPLMLVVTPTRELAQQIEDVCRAIAKCTGHTSVTVVGGVSYNPQRDKLKRGCD--ILIAT 174
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSIS---GKPHTVVFNDCLTY 370
P RL L+ A + V +LV+D D + L +R+ + T++F+ L
Sbjct: 175 PGRLQDLIDQGACSLDQVQVLVLDEADRMLDMGFLPAVRRIVGYTRDDRQTLLFSATLDE 234
Query: 371 TSVPAVQNLL 380
+V ++ +L+
Sbjct: 235 QAVGSITDLV 244
>gi|350410178|ref|XP_003488972.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Bombus
impatiens]
Length = 704
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Query: 211 WKCYSSAKDIL---ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQE 267
W S +D++ +T + + ++ R E++G P +L L ++E
Sbjct: 321 WPILLSGRDLIGIAQTGTGKTLAFLLPALIHIEGQITPRPERKG-----PTVLVLAPTRE 375
Query: 268 KAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
A ++ GI V ++ G Q+T + E +++TP RL LV + ++
Sbjct: 376 LALQIEKEVNKYSYHGIKAVCIYGGGCRKKQVTVVTEG-VEIVIATPGRLNDLVRTEVLN 434
Query: 328 VSGVSLLVVDRLDSL 342
VS VS LV+D D +
Sbjct: 435 VSSVSYLVLDEADRM 449
>gi|388599353|ref|ZP_10157749.1| ATP-dependent RNA helicase [Vibrio campbellii DS40M4]
Length = 447
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 103/239 (43%), Gaps = 25/239 (10%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYS----------SAKDILETS--GSSSTIVQI 233
+EN ++ + DN L N +F K + KD+L +S GS T+
Sbjct: 1 MENTLQFKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTL--- 57
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293
A+++ S+ K FS P + L ++E A +V + + + +L G
Sbjct: 58 AFVLPMLHKSLKTK---SFSAKDPRAVILAPTRELAKQVYGELRSMLGGLTYDAALILGG 114
Query: 294 A-IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR 352
+ Q+ LR P+F+V+TP RL + +++ + G+ LV+D D + +R
Sbjct: 115 ENFNDQVKALRRY-PKFIVATPGRLADHLEHRSLFLDGLETLVLDEADRMLDLGFAPELR 173
Query: 353 QSISGKPH----TVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC 407
+ H T++F+ L + V + + +L + R+++ S + I Q +C
Sbjct: 174 RIHRAAKHRRRQTLMFSATLDHAEVNDIASEMLNAPKRIAIGVS-NEEHKDITQKFYLC 231
>gi|296134828|ref|YP_003642070.1| DEAD/DEAH box helicase [Thiomonas intermedia K12]
gi|295794950|gb|ADG29740.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
Length = 533
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFG----IHTVSLHPGAAIDHQITGLRSCEPEFLVS 312
P L L ++E AA+V + L A+G +H+++++ G + QI L + +V+
Sbjct: 78 PRALILTPTRELAAQVH---ENLAAYGRHLKLHSMAMYGGVGMQPQINALARGM-DIVVA 133
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
TP RLL S + ID+S V +LV+D D +
Sbjct: 134 TPGRLLDHQSQRNIDLSAVQMLVLDEADRM 163
>gi|261188573|ref|XP_002620701.1| ATP-dependent RNA helicase DHH1 [Ajellomyces dermatitidis SLH14081]
gi|239593185|gb|EEQ75766.1| ATP-dependent RNA helicase DHH1 [Ajellomyces dermatitidis SLH14081]
gi|239613245|gb|EEQ90232.1| ATP-dependent RNA helicase DHH1 [Ajellomyces dermatitidis ER-3]
gi|327357431|gb|EGE86288.1| ATP-dependent RNA helicase DHH1 [Ajellomyces dermatitidis ATCC
18188]
Length = 507
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 67/174 (38%), Gaps = 22/174 (12%)
Query: 207 GIEFWKCYSSAK---DILETSGSSSTIVQIAWI-VATAADSIARKEKEGFSFTGPFL--- 259
G+EF Y + I E + +Q I VA I + K G T F+
Sbjct: 45 GLEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPT 104
Query: 260 -------------LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSC 305
L LV ++E A + VCK L K GI+ + G + I L
Sbjct: 105 LERTNPKNSKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLNEA 164
Query: 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
+V TP R+L L S D+S S V+D D L + +I Q +S P
Sbjct: 165 V-HIIVGTPGRILDLASKGVADLSECSTFVMDEADKLLSPEFTPVIEQLLSFHP 217
>gi|403381239|ref|ZP_10923296.1| DEAD/DEAH box helicase [Paenibacillus sp. JC66]
Length = 522
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 100/226 (44%), Gaps = 17/226 (7%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDH 297
TAA SI K S + L + ++E A +V + L F GI ++ ++ G I
Sbjct: 53 TAAFSIPLIHKIETSQSKIVALVMCPTRELAIQVAEEIEKLGRFKGIRSLPIYGGQDIVK 112
Query: 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG 357
QI L+ P+ ++ TP RLL ++ K I + V +V+D D + + I+ +S
Sbjct: 113 QIRALKK-RPQIIIGTPGRLLDHINRKTIRLEDVETVVLDEADEMLDMGFMEDIQAILSQ 171
Query: 358 KP---HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQ-SACIIQSVNVCASDEEK 413
P HT++F + T P +Q L + + Q SA +IQ + +++K
Sbjct: 172 VPEERHTMLF----SATMPPNIQKLAQQFLRDPQHVSVIPKQVSAPLIQQAYIEVHEKQK 227
Query: 414 ILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459
+++D D L +++ K + L L+ +GYS
Sbjct: 228 FEALCRLIDMEAPD------LAIIFGRTK-RRVDELSEALQKRGYS 266
>gi|421277534|ref|ZP_15728353.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
mitis SPAR10]
gi|395874786|gb|EJG85868.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
mitis SPAR10]
Length = 360
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ V K +A G+ G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFEVTKTWGEAIGLTAQLFLSGSSQKRQIERLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+LV LK I + V +++D D L + + + + P H +++ T
Sbjct: 127 FELVKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITNYAPRDHQLIYMSATT 180
>gi|302318882|ref|NP_001032894.2| ATP-dependent RNA helicase DDX42 [Danio rerio]
Length = 908
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 224 SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF 282
+GS T I I+ D +KE GP + + ++E ++ + CK KA+
Sbjct: 301 TGSGKTAAFIWPILVHIMD-----QKELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAY 355
Query: 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
G+ +V+++ G ++ Q L+ E +V TP RL+ V KA + V+ LV D D +
Sbjct: 356 GLRSVAVYGGGSMWEQAKALQEGA-EIVVCTPGRLIDHVKKKATSLQRVTFLVFDEADRM 414
>gi|378768016|ref|YP_005196486.1| ATP-dependent RNA helicase RhlE [Pantoea ananatis LMG 5342]
gi|365187499|emb|CCF10449.1| ATP-dependent RNA helicase RhlE [Pantoea ananatis LMG 5342]
Length = 449
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 260 LFLVSSQEKAAKV-RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L ++E AA+V +V + K + ++ + G +I+ Q+ LR + LV+TP RLL
Sbjct: 79 LILTPTRELAAQVGENVVEYSKFLPLRSLVVFGGVSINPQMMKLRGGV-DILVATPGRLL 137
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
LV A+D+S V +LV+D D + + IR+ ++ P
Sbjct: 138 DLVHQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLAKLP 178
>gi|357236526|ref|ZP_09123869.1| hypothetical protein STRCR_2065 [Streptococcus criceti HS-6]
gi|356884508|gb|EHI74708.1| hypothetical protein STRCR_2065 [Streptococcus criceti HS-6]
Length = 519
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 29/146 (19%)
Query: 226 SSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIH 285
+++ ++Q A ++A + + ++E F F +EK KVRSV
Sbjct: 65 TANNVIQ-ALVIAPTRELAVQSQEELFRF----------GREKGVKVRSV---------- 103
Query: 286 TVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKG 345
+ G++I+ QI LRS +V TP RLL L+ +A+ ++ V L++D D +
Sbjct: 104 ----YGGSSIEKQIKALRSG-AHIVVGTPGRLLDLIKRRALKLNTVETLILDEADEMLNM 158
Query: 346 DTLSLIRQSISGKP---HTVVFNDCL 368
L I IS P T++F+ +
Sbjct: 159 GFLEDIEAIISHVPNERQTLLFSATM 184
>gi|269962799|ref|ZP_06177140.1| ATP-dependent RNA helicase, DEAD box family [Vibrio harveyi 1DA3]
gi|269832489|gb|EEZ86607.1| ATP-dependent RNA helicase, DEAD box family [Vibrio harveyi 1DA3]
Length = 447
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 101/239 (42%), Gaps = 25/239 (10%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYS----------SAKDILETS--GSSSTIVQI 233
+EN ++ + DN L N +F K + KD+L +S GS T+
Sbjct: 1 MENTLQFKDLGLDNRLLKNLKHYDFKKATDIQKQAIPVAIAGKDLLASSKTGSGKTL--- 57
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPG 292
A+++ S+ K FS P + L ++E A +V + L + G
Sbjct: 58 AFVLPMLHKSLKTK---SFSAKDPRAVILAPTRELAKQVYGELRSMLGGLSYDAALILGG 114
Query: 293 AAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR 352
+ Q+ LR P+F+V+TP RL + +++ + G+ L++D D + +R
Sbjct: 115 ENFNDQVKALRRY-PKFIVATPGRLADHLEHRSLFLDGLETLILDEADRMLDLGFAPELR 173
Query: 353 QSISGKPH----TVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC 407
+ H T++F+ L + V + + +L + R+++ S + I Q +C
Sbjct: 174 RIHKAAKHRRRQTLMFSATLDHAEVNDIASEMLNAPKRIAIGVS-NEEHKDITQKFYLC 231
>gi|429743607|ref|ZP_19277153.1| putative ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon
020 str. F0370]
gi|429164947|gb|EKY07038.1| putative ATP-dependent RNA helicase RhlE [Neisseria sp. oral taxon
020 str. F0370]
Length = 444
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 18/158 (11%)
Query: 217 AKDILET--SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR- 273
+DI+ + +GS T A+++ T R +K G GP L L ++E AA+V
Sbjct: 40 GRDIMASAQTGSGKTA---AFLLPTLQRLTRRSDKPG---KGPRALVLTPTRELAAQVEK 93
Query: 274 ---SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSG 330
+ K +K F TVS+ GA+ +Q L S + +V+TP RL+ L++ +D
Sbjct: 94 NALNYAKNMKWF--RTVSIVGGASFGYQTRAL-SKPVDLIVATPGRLMDLMNSGKVDFDR 150
Query: 331 VSLLVVDRLDSLSKGDTLSLIRQSISGKP---HTVVFN 365
+ +L++D D + + I ++ P T++F+
Sbjct: 151 LEVLILDEADRMLDMGFIDDIETIVAATPKERQTLLFS 188
>gi|409200013|ref|ZP_11228216.1| DEAD/DEAH box helicase [Pseudoalteromonas flavipulchra JG1]
Length = 443
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P ++ + ++E A +V S C+ L A + + G + Q+ LR +P F+V TP
Sbjct: 74 PRVVIVAPTRELATQVFSECRALCAGTNLQVCKILGGENYNDQVKALRR-DPHFVVGTPG 132
Query: 316 RLLKLVSLKAIDVSGVSLLV---VDRLDSLSKGDTLSLIRQSISGKP-HTVVFNDCLTYT 371
R+ V +++ + G+ LL+ DR+ L L +I S + T++F+ L +T
Sbjct: 133 RIADHVENRSLFLGGLELLIFDEADRMFDLGFEKQLDVINDSADHRQRQTLLFSATLDHT 192
Query: 372 SVPAVQNLLLGSINRLSLNQS 392
V A LL S R+ L+ +
Sbjct: 193 QVEASSRQLLKSPKRIMLSNA 213
>gi|385825560|ref|YP_005861902.1| ATP-dependent RNA helicase [Lactobacillus johnsonii DPC 6026]
gi|329667004|gb|AEB92952.1| ATP-dependent RNA helicase [Lactobacillus johnsonii DPC 6026]
Length = 409
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
+ L + E A + R+ P K+ G+ T++L Q+ L+ +PE +++TP R
Sbjct: 65 IILEPTTELAIQTRNNLLPYAKSLGLKTIALVGAGNRKRQLERLKKEKPEIIIATPGRFF 124
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL---SKGDTLSLIRQSISGKPHTVVF 364
+S I ++ LV+D D + +K D LS + Q++S ++F
Sbjct: 125 DFLSENRIKYQDINALVIDEADDILEFTKLDLLSSLGQNLSSTAQILLF 173
>gi|289663805|ref|ZP_06485386.1| ATP-dependent RNA helicase [Xanthomonas campestris pv. vasculorum
NCPPB 702]
Length = 430
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 111/247 (44%), Gaps = 22/247 (8%)
Query: 187 ENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILET--SGSSSTIVQIAWIVATAADSI 244
E+A+ GV P+ V + +D++ T +GS T+ A+ + +
Sbjct: 17 ESALARAGVRTLTPIQVA-----MIPPMLAGRDLIATAQTGSGKTL---AYALPLLQQRV 68
Query: 245 ARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF---GIHTVSLHPGAAIDHQITG 301
E+ G L LV ++E A+V PL A + V+ G AI+ Q+
Sbjct: 69 QAPEQAPRVLGG---LILVPTRELVAQVAQTLLPLAAALPRRLKIVAATGGEAINPQLMA 125
Query: 302 LRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGK 358
LR + +++TP RLL LV+ A+ ++ VS L++ DRL L G L I + +
Sbjct: 126 LRGGA-DIVIATPGRLLDLVAHNALRLAQVSTLLLDEADRLLDLGFGAELDRIFGLLPAQ 184
Query: 359 PHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGI 418
+V+ + ++ A+ L R+++ + A +++ V A ++L+ +
Sbjct: 185 RQSVLVSATFP-PAMAALAKWRLRDPLRITIEGTPEQAPAITQRAIAVDAGQRTQLLRHL 243
Query: 419 QVLDHAY 425
+L+HA+
Sbjct: 244 -LLEHAW 249
>gi|269965345|ref|ZP_06179465.1| ATP-dependent RNA helicase, DEAD box family [Vibrio alginolyticus
40B]
gi|269829991|gb|EEZ84220.1| ATP-dependent RNA helicase, DEAD box family [Vibrio alginolyticus
40B]
Length = 447
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 101/239 (42%), Gaps = 25/239 (10%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYS----------SAKDILETS--GSSSTIVQI 233
+EN ++ + DN L N +F K + KD+L +S GS T+
Sbjct: 1 MENTLQFKDLGLDNRLLKNLKHYDFKKATDIQQQAIPVAIAGKDLLASSKTGSGKTL--- 57
Query: 234 AWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPG 292
A+++ S+ K FS P + L ++E A +V + + A + G
Sbjct: 58 AFVLPMLHKSLKTK---SFSAKDPRAVILAPTRELAKQVYGELRSMLAGLSYEAALILGG 114
Query: 293 AAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIR 352
+ Q+ LR P+F+V+TP RL + +++ + G+ L++D D + +R
Sbjct: 115 ENFNDQVKALRRY-PKFIVATPGRLADHLDHRSLYLDGLETLILDEADRMLDLGFAPELR 173
Query: 353 QSISGKPH----TVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC 407
+ H T++F+ L + V + +L + R+++ S + I Q +C
Sbjct: 174 RIHKAAKHRRRQTLMFSATLDHADVNEIAAEMLNAPKRIAIGVS-NEEHKDITQKFYLC 231
>gi|297197315|ref|ZP_06914712.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
gi|197714892|gb|EDY58926.1| ATP-dependent RNA helicase [Streptomyces sviceus ATCC 29083]
Length = 469
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 13/131 (9%)
Query: 216 SAKDILET--SGSSSTIV-QIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272
+ +D+L +GS T+ + +V TA K+ P L LV ++E A +V
Sbjct: 62 AGRDVLGRGRTGSGKTLAFGLPLLVRTAGQRAEAKQ--------PLALILVPTRELAQQV 113
Query: 273 RSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331
P +A G+ ++ G +I QI LR E +V+TP RL LV KA + V
Sbjct: 114 SEALAPYAEALGLRMAAVVGGMSIGRQIAALRDGA-EVVVATPGRLHDLVERKACRLGRV 172
Query: 332 SLLVVDRLDSL 342
+ V+D D +
Sbjct: 173 RITVLDEADQM 183
>gi|91227047|ref|ZP_01261584.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
gi|91188849|gb|EAS75135.1| putative ATP-dependent RNA helicase [Vibrio alginolyticus 12G01]
Length = 416
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 16/156 (10%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRS-CEPEFLVS 312
L LV ++E A++V +K++ H TV++ G +++ Q+ LR C+ +V+
Sbjct: 87 LILVPTRELASQV---AYNVKSYSYHLRDKIKTVAVFGGVSVNPQMLALRGGCD--IIVA 141
Query: 313 TPERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLT 369
TP RLL LVS AI + V LV+ DR+ SL + L+ I + K T++F+
Sbjct: 142 TPGRLLDLVSSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLPEKKQTLLFSATFP 201
Query: 370 YTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVN 405
Q LL + + L + AS + SVN
Sbjct: 202 DKVTTLAQQLLRDPVE-VQLQSAEASTLVQRVFSVN 236
>gi|422858662|ref|ZP_16905312.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK1057]
gi|327459805|gb|EGF06145.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK1057]
Length = 363
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK + G+ L G++ QI L+ PE ++ TP R+
Sbjct: 70 LLILAPNTELAGQIFEVCKTWSEPLGLTAQLLLSGSSQKRQIERLKKG-PEIIIGTPGRI 128
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSL 342
+LV LK I + + +++D D L
Sbjct: 129 FELVKLKKIKMMNIETIILDEFDQL 153
>gi|325192175|emb|CCA26630.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 627
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGL-RSCEPEFLVSTP 314
P L L ++E A+++ K G+ V L+ GA + Q+ L R C+ LV+TP
Sbjct: 232 PAALILAPTRELASQIYDEAKKFCYCTGVAPVVLYGGAEVGRQVRELERGCD--LLVATP 289
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RL+ L+ + +SG+ L++D D +
Sbjct: 290 GRLVDLMERGRVSLSGIRFLILDEADRM 317
>gi|291616785|ref|YP_003519527.1| RhlE [Pantoea ananatis LMG 20103]
gi|291151815|gb|ADD76399.1| RhlE [Pantoea ananatis LMG 20103]
Length = 449
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 260 LFLVSSQEKAAKV-RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L ++E AA+V +V + K + ++ + G +I+ Q+ LR + LV+TP RLL
Sbjct: 79 LILTPTRELAAQVGENVVEYSKYLPLRSLVVFGGVSINPQMMKLRGGV-DILVATPGRLL 137
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
LV A+D+S V +LV+D D + + IR+ ++ P
Sbjct: 138 DLVHQNAVDLSQVEVLVLDEADRMLDMGFIHDIRRVLAKLP 178
>gi|335356475|ref|ZP_08548345.1| ATP-dependent RNA helicase [Lactobacillus animalis KCTC 3501]
Length = 503
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 289 LHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG-- 345
++ GA I QI L++ P+ LV TP RLL ++ K +D+S V +LV+D D L G
Sbjct: 103 VYGGADIRRQIKLLKNP-PQILVGTPGRLLDHINRKTVDLSKVKMLVLDEADEMLDMGFL 161
Query: 346 DTLSLIRQSISGKPHTVVFNDCL 368
D + I ++ G+ T++F+ +
Sbjct: 162 DDIEKIISNVPGQRQTLLFSATM 184
>gi|224007100|ref|XP_002292510.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220972152|gb|EED90485.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 365
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 11/158 (6%)
Query: 255 TGPFLLFLVSSQEKAAKVRSVC-KPLKAFGIHTVSLHPGAAIDHQITGL-RSCEPEFLVS 312
T P L L ++E A++++ K L GI +V ++ GA + Q+ + R C+ LV+
Sbjct: 52 TYPECLVLAPTRELASQIQDEAQKFLYCTGIASVVVYGGADVRDQLRQIERGCD--LLVA 109
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI--SGKPHTVVFNDCLTY 370
TP RL+ L+ + + V LV+D D + IR+ + G PH +
Sbjct: 110 TPGRLVDLIERGRLSMENVKFLVLDEADRMLDMGFEPQIRRIVEQEGMPHGDDRQTMMFS 169
Query: 371 TSVPAVQNLLLGSINR----LSLNQSVASQSACIIQSV 404
+ PA L G R L++ + V S S ++QSV
Sbjct: 170 ATFPANIQRLAGDFMRDYIFLTVGR-VGSASENVVQSV 206
>gi|66800751|ref|XP_629301.1| hypothetical protein DDB_G0293064 [Dictyostelium discoideum AX4]
gi|60462682|gb|EAL60884.1| hypothetical protein DDB_G0293064 [Dictyostelium discoideum AX4]
Length = 573
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 111/284 (39%), Gaps = 43/284 (15%)
Query: 198 DNPLFVNSWGIEFWKCYSSAKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFT 255
+ P V S G W S D+L S GS T+ + A + I + ++ + +
Sbjct: 160 EKPTPVQSLG---WPIALSGSDMLGISKTGSGKTLS----FILPAIEHILAQPRQSY-YP 211
Query: 256 GPFLLFLVSSQEKAAKV-RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP +L + ++E A ++ + + L+ I +++ GA Q L S P+ +V TP
Sbjct: 212 GPSVLVVAPTRELANQINQEAEQYLRLVNIEIATIYGGAPRRSQQLQL-SRRPKIVVGTP 270
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-----KPHTVVFNDCLT 369
R++ + + + +S LVVD D L + Q I G +P V T
Sbjct: 271 GRIIDFMESGDLSLKNISFLVVDEADRLMEMG----FEQQIDGIFNSIRPDRQVLYWSAT 326
Query: 370 YT-SVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ V + + + RL + S + + I Q + +D +K+ + L Y
Sbjct: 327 WPKKVSSFAEKHIRTPIRLQIGSSQLTANKNISQKFKIVPTDADKVDALMDTLGEIY--- 383
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKG------YSISTGSNC 466
D K Q L+ T+ KG Y S G N
Sbjct: 384 ------------SADEKAQTLIFTMTKKGADTLKHYIQSNGDNV 415
>gi|149276646|ref|ZP_01882789.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
gi|149232315|gb|EDM37691.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
Length = 376
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Query: 259 LLFLVSSQEKAAKVRSVCKPLKAF---GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
+L LV ++E A +V+ V K + T++++ G +I+ Q+ L+ LV TP
Sbjct: 76 VLVLVPTRELAEQVKEVFKTFSTSLPEAVKTLAVYGGVSINTQMMALQGVN--VLVGTPG 133
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RLL+LV+ ++++S V L++D D +
Sbjct: 134 RLLELVAANSVNLSSVETLILDEADKM 160
>gi|30249980|ref|NP_842050.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC
19718]
gi|30139087|emb|CAD85951.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC
19718]
Length = 498
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 260 LFLVSSQEKAAKV-RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L + ++E A ++ SV K K + T + G I+ QI L++ E LV+TP RLL
Sbjct: 85 LIMAPTRELAMQIDESVRKYGKYLALRTAVVFGGINIEPQIAALQAGV-EILVATPGRLL 143
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL 342
LV KA++ S +LV+D D +
Sbjct: 144 DLVEQKAVNFSKTEILVLDEADRM 167
>gi|323351765|ref|ZP_08087419.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis VMC66]
gi|322122251|gb|EFX93977.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis VMC66]
Length = 363
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK + G+ L G++ QI L+ PE ++ TP R+
Sbjct: 70 LLILAPNTELAGQIFEVCKTWAEPLGLTAQLLLSGSSQKRQIERLKKG-PEIIIGTPGRI 128
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSL 342
+L+ LK I + V +++D D L
Sbjct: 129 FELIKLKKIKMMNVETIILDEFDQL 153
>gi|145522674|ref|XP_001447181.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124414681|emb|CAK79784.1| unnamed protein product [Paramecium tetraurelia]
Length = 322
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 12/165 (7%)
Query: 256 GPFLLFLVSSQEKAAKVRS-VCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP +L LV ++E A +++ + +A+ +++ ++ GA Q L + +P+ +V+TP
Sbjct: 142 GPMMLILVPTRELAMQIQEHISYFSEAYNMNSACIYGGADKRPQEMAL-ARDPDIVVATP 200
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQ---SISGKPHTVVFNDCLTYT 371
RL+ + + ++ V+ LV+D D + +R+ I TV F+ T
Sbjct: 201 GRLIDFLDAQVTNLHNVTYLVLDEADRMLDMGFEQQVRKIDSYIREDRQTVFFSATWPRT 260
Query: 372 SVPAVQNLLLGSINRLSLNQSVASQSACI---IQSVNVCASDEEK 413
VQNL + +N + SQ I I +C EK
Sbjct: 261 ----VQNLACDLCHNEPINLYIGSQEVTINKNITQETICLYQNEK 301
>gi|90408322|ref|ZP_01216486.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3]
gi|90310553|gb|EAS38674.1| ATP-dependent RNA helicase DeaD [Psychromonas sp. CNPT3]
Length = 579
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 252 FSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEF 309
S P +L L ++E A +V + G H + ++ G + + Q LR P+
Sbjct: 75 LSLKAPQVLVLAPTRELAIQVAEAFQTYSRHLAGFHVMPIYGGQSYNIQFGQLRRG-PQV 133
Query: 310 LVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKG---DTLSLIRQSISGKPHTVVFND 366
+V TP R++ + K +D+S ++ LV+D D + + D + I + + K T +F+
Sbjct: 134 VVGTPGRIMDHLKRKTLDLSNLTTLVLDEADEMLRMGFIDDVETIMKDMPAKHQTALFSA 193
Query: 367 CL 368
+
Sbjct: 194 TM 195
>gi|42518736|ref|NP_964666.1| hypothetical protein LJ0811 [Lactobacillus johnsonii NCC 533]
gi|41583022|gb|AAS08632.1| hypothetical protein LJ_0811 [Lactobacillus johnsonii NCC 533]
Length = 409
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
+ L + E A + R+ P K+ G+ T++L Q+ L+ +PE +++TP R
Sbjct: 65 IILEPTTELAIQTRNNLLPYAKSLGLKTIALVGAGNRKRQLERLKKEKPEIIIATPGRFF 124
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL---SKGDTLSLIRQSISGKPHTVVF 364
+S I ++ LV+D D + +K D LS + Q++S ++F
Sbjct: 125 DFLSENRIKYQDINALVIDEADDILEFTKLDLLSSLGQNLSSTAQILLF 173
>gi|345566862|gb|EGX49802.1| hypothetical protein AOL_s00076g686 [Arthrobotrys oligospora ATCC
24927]
Length = 1086
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 95/213 (44%), Gaps = 14/213 (6%)
Query: 254 FTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVS 312
GP L + ++E A ++ KP LKA + V + G+ I QI L+ EF+V
Sbjct: 518 LEGPIALVMTPTRELATQIFKESKPFLKALNLRGVCAYGGSPIKDQIAELKRGA-EFIVC 576
Query: 313 TPERLLKLV---SLKAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFND 366
TP R++ L+ S + ++ V+ +V+D D + G ++R + +P TV+F+
Sbjct: 577 TPGRMIDLLAANSGRVTNLKRVTYVVLDEADRMFDMGFEPQVMRIIGNIRPDRQTVLFSA 636
Query: 367 CLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYG 426
+ +L+ + + +SV + I V ++ K + +++L Y
Sbjct: 637 TFPSQMEALARKVLIKPVEIVVGARSVVAAEVSQIVEVR---TETTKFARLLEILGELYD 693
Query: 427 DHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459
+ + L V + +L+S L +GY+
Sbjct: 694 KEDDA---RSLVFVDRQESADSLLSDLMKRGYA 723
>gi|313885567|ref|ZP_07819317.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619297|gb|EFR30736.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
ACS-139-V-Col8]
Length = 526
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 10/125 (8%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L + ++E A +V L K +++ G +I QI ++ +P+ +V TP RLL
Sbjct: 73 LIIAPTRELAIQVHDELYSLSKGLKTKVYAVYGGYSIGKQIDRIQKLKPQVIVGTPGRLL 132
Query: 319 KLVSLKAIDVSGVSLLVVDRLDS-LSKG---DTLSLIRQSISGKPHTVVFNDCLTYTSVP 374
L+ + ID S + L++D D L+ G D +++ Q+ S + T++F + T
Sbjct: 133 DLMRRQIIDTSYLKTLIMDEADEMLNMGFIEDIKAIVEQTPSSR-QTLMF----SATMPK 187
Query: 375 AVQNL 379
+VQNL
Sbjct: 188 SVQNL 192
>gi|240279270|gb|EER42775.1| ATP-dependent RNA helicase dhh1 [Ajellomyces capsulatus H143]
Length = 384
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 67/174 (38%), Gaps = 22/174 (12%)
Query: 207 GIEFWKCYSSAK---DILETSGSSSTIVQIAWI-VATAADSIARKEKEGFSFTGPFL--- 259
G+EF Y + I E + +Q I VA I + K G T F+
Sbjct: 18 GLEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPT 77
Query: 260 -------------LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSC 305
L LV ++E A + VCK L K GI+ + G + I L
Sbjct: 78 LERTNPKNSKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLNEA 137
Query: 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
+V TP R+L L S D+S S V+D D L + +I Q +S P
Sbjct: 138 V-HIIVGTPGRILDLASKGVADLSDCSTFVMDEADKLLSPEFTPVIEQLLSFHP 190
>gi|444726996|gb|ELW67506.1| ATP-dependent RNA helicase DDX42 [Tupaia chinensis]
Length = 939
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP + + ++E ++ + CK KA+ + +V+++ G ++ Q L+ E +V TP
Sbjct: 222 GPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGA-EIVVCTP 280
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RL+ V KA ++ VS LV D D +
Sbjct: 281 GRLIDHVKKKATNLQRVSYLVFDEADRM 308
>gi|375310100|ref|ZP_09775378.1| RNA helicase yqfR [Paenibacillus sp. Aloe-11]
gi|375078053|gb|EHS56283.1| RNA helicase yqfR [Paenibacillus sp. Aloe-11]
Length = 461
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 260 LFLVSSQEKAAK-VRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
+ L SQE A + VR + + GI + L GAAI QI L+ P+ +V TP R+
Sbjct: 75 MILAPSQELAMQIVREGQRYGEQRGIRVLGLIGGAAIKRQIEKLKD-HPQLVVGTPGRVR 133
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL 342
+L++ K + + ++ +V+D +D +
Sbjct: 134 ELIAAKKLKMHNITTIVIDEVDQM 157
>gi|337281772|ref|YP_004621243.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
parasanguinis ATCC 15912]
gi|335369365|gb|AEH55315.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
parasanguinis ATCC 15912]
Length = 361
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ V K + G+ T G++ QI L+ PE LV TP R+
Sbjct: 68 LLILAPNTELAGQIFDVTKQWAEPLGLQTQLFLSGSSQKRQIERLKKG-PEILVGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSL 342
+L+ LK I + V +++D D L
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQL 151
>gi|71280589|ref|YP_270076.1| DEAD-box ATP dependent DNA helicase [Colwellia psychrerythraea 34H]
gi|71146329|gb|AAZ26802.1| ATP-dependent RNA helicase, DEAD box family [Colwellia
psychrerythraea 34H]
Length = 432
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 13/130 (10%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFGIH------TVSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A + V +K++ +H T+++ G +++ Q+ LR + LV+T
Sbjct: 89 LVLVPTRELA---KQVADSIKSYAVHFNGEIKTLAVFGGVSVNIQMLALRGGV-DILVAT 144
Query: 314 PERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTY 370
P RLL L+S AI + V LV+ DR+ SL + L+ + K T++F+
Sbjct: 145 PGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLALTPKKKQTLLFSATFPE 204
Query: 371 TSVPAVQNLL 380
Q LL
Sbjct: 205 QVTTLTQELL 214
>gi|259502863|ref|ZP_05745765.1| ATP-dependent RNA helicase DbpA [Lactobacillus antri DSM 16041]
gi|259169230|gb|EEW53725.1| ATP-dependent RNA helicase DbpA [Lactobacillus antri DSM 16041]
Length = 463
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 265 SQEKAAKVRSVCKPLKAFGIHTVSLH---PGAAIDHQITGLRSCEPEFLVSTPERLLKLV 321
S+E A ++ + K L + +++H G HQI L +P+ ++ TP R+L L+
Sbjct: 87 SRELAYQIYNAAKQLNQYADQPLTIHNYVGGTDKQHQIAQLERKQPQLVIGTPGRVLDLI 146
Query: 322 SLKAIDVSGVSLLVVDRLD 340
+ +DV ++ VVD D
Sbjct: 147 KSQHLDVHTATMFVVDEAD 165
>gi|395763087|ref|ZP_10443756.1| ATP-dependent RNA helicase RhlE [Janthinobacterium lividum PAMC
25724]
Length = 417
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 8/163 (4%)
Query: 260 LFLVSSQEKAAKV----RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
L LV ++E AA+V ++ KPL + L G +I+ Q+ LR + +V+TP
Sbjct: 76 LILVPTRELAAQVGQTVHALAKPLP-IKLKISVLFGGVSINPQMMQLRGGA-DIVVATPG 133
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTV--VFNDCLTYTSV 373
RLL LV A+ + GVSL V+D D L I+ ++ P T +F SV
Sbjct: 134 RLLDLVRQNAVKLGGVSLCVLDEADRLLDMGFSEEIKAILALLPSTRQNLFFSATFPDSV 193
Query: 374 PAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILK 416
A+ + LL R+ + Q + +++ V ++L+
Sbjct: 194 QALADSLLKEPARIEVASEPQDQPDIVQRAITVDVPRRTQLLR 236
>gi|390455486|ref|ZP_10241014.1| RNA helicase yqfR [Paenibacillus peoriae KCTC 3763]
Length = 461
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 260 LFLVSSQEKAAK-VRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
+ L SQE A + VR + + GI + L GAAI QI L+ P+ +V TP R+
Sbjct: 75 MILAPSQELAMQIVREGQRYGEQRGIRVLGLIGGAAIKRQIEKLKD-HPQLVVGTPGRVR 133
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL 342
+L++ K + + ++ +V+D +D +
Sbjct: 134 ELIAAKKLKMHNITAIVIDEVDQM 157
>gi|154270258|ref|XP_001535985.1| hypothetical protein HCAG_09069 [Ajellomyces capsulatus NAm1]
gi|150410056|gb|EDN05444.1| hypothetical protein HCAG_09069 [Ajellomyces capsulatus NAm1]
Length = 457
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L LV ++E A + VCK L K GI+ + G + I L +V TP R+L
Sbjct: 61 LILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLNEAV-HIIVGTPGRIL 119
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
L S D+S S V+D D L + +I Q +S P
Sbjct: 120 DLASKGVADLSECSTFVMDEADKLLSPEFTPVIEQLLSFHP 160
>gi|88812119|ref|ZP_01127371.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
Nb-231]
gi|88790623|gb|EAR21738.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
Nb-231]
Length = 429
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 59/109 (54%), Gaps = 8/109 (7%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIH----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P L L ++E AA+VR + ++++G H + ++ G I+ QI+ LRS + +V
Sbjct: 72 APRALVLTPTRELAAQVR---ESVRSYGRHLPLRSTAVFGGVGINPQISALRSGV-DVVV 127
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPH 360
+TP RLL + + +++S V + V+D D + + IR+ ++ P
Sbjct: 128 ATPGRLLDHLQQRTVELSRVEIFVLDEADRMLDMGFIRDIRKVMAALPQ 176
>gi|261820134|ref|YP_003258240.1| ATP-dependent RNA helicase DeaD [Pectobacterium wasabiae WPP163]
gi|261604147|gb|ACX86633.1| DEAD/DEAH box helicase domain protein [Pectobacterium wasabiae
WPP163]
gi|385870319|gb|AFI88839.1| Cold-shock DEAD box protein A [Pectobacterium sp. SCC3193]
Length = 632
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLK--AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
P +L L ++E A +V C G++ V+L+ G D Q+ LR + +V TP
Sbjct: 75 PQMLVLAPTRELAVQVAEACNDFAKHMHGVNVVALYGGQRYDVQLRALRGGA-QIVVGTP 133
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RLL + +D+S +S LV+D D +
Sbjct: 134 GRLLDHLKRGTLDLSNLSGLVLDEADEM 161
>gi|344199440|ref|YP_004783766.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus
ferrivorans SS3]
gi|343774884|gb|AEM47440.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
ferrivorans SS3]
Length = 419
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 7/171 (4%)
Query: 260 LFLVSSQEKAAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L LV ++E AA+V SV + + ++ L G I+ Q+ LR + LV+TP RLL
Sbjct: 81 LILVPTRELAAQVEESVQLYGRYLSLRSLVLIGGVKINPQMQKLRRSV-DVLVATPGRLL 139
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQN 378
+ +++D+S V +LV+D D + + IR+ ++ P N + T P ++
Sbjct: 140 DHIQQRSVDLSRVEILVLDEADRMLDMGFIRDIRRILAVLPKKRQ-NLLFSATFSPEIRA 198
Query: 379 LLLGSINRLSLNQSVASQSAC---IIQSVNVCASDEEKILKGIQVLDHAYG 426
L G +N + + VAS++A + Q V D ++ L + +H +G
Sbjct: 199 LADGLLNNPA-SVEVASRNATADNVAQRVFAVDQDRKRELLAHLIEEHQWG 248
>gi|326526415|dbj|BAJ97224.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 872
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 247 KEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA----FGIHTVSLHPGAAIDHQITGL 302
KE EG S GP +++ + AK VC LK GIH V + G +++ Q L
Sbjct: 317 KEAEGSSTGGPLRALILTPTRELAK--QVCDHLKEAAKFLGIHVVPIVGGLSMEKQERLL 374
Query: 303 RSCEPEFLVSTPERLLKLVS---LKAIDVSGVSLLVVDRLDSL 342
+ +PE +V TP RL +L+S +++ +S V+D D +
Sbjct: 375 KK-KPEIVVGTPGRLWELMSSGNQHLVELHSLSFFVLDEADRM 416
>gi|198430288|ref|XP_002129439.1| PREDICTED: similar to eukaryotic translation initiation factor 4A
[Ciona intestinalis]
Length = 430
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 28/166 (16%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L + ++E A +++ V L + IH + G ++ +I ++ P+ +V TP R+
Sbjct: 128 LVIAPTRELAQQIQKVVMALGDYESIHCHACIGGTSVRTEIQVFQTNPPQIVVGTPGRVF 187
Query: 319 KLVSLKAIDVSGVSLLVVDRLDS-LSKGDTLSLIRQSISGKPHTVVFNDCL--TYTSVPA 375
+++ K +D S V + V+D D LS+G F D + + ++PA
Sbjct: 188 DMINRKYLDTSKVKMFVLDEADEMLSRG------------------FKDQIYEIFRTMPA 229
Query: 376 -VQNLLLGSINRLSLNQSVASQSACII-QSVNVCASDEEKILKGIQ 419
+Q +LL + ++ V + C + + + EE L+GIQ
Sbjct: 230 TIQVILLSA----TMPTDVLDVTTCFMPDPIRILVKKEELTLEGIQ 271
>gi|387879331|ref|YP_006309634.1| DEAD RNA helicase [Streptococcus parasanguinis FW213]
gi|386792785|gb|AFJ25820.1| DEAD RNA helicase, putative [Streptococcus parasanguinis FW213]
Length = 361
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ V K + G+ T G++ QI L+ PE LV TP R+
Sbjct: 68 LLILAPNTELAGQIFDVTKQWAEPLGLQTQLFLSGSSQKRQIERLKKG-PEILVGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSL 342
+L+ LK I + V +++D D L
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQL 151
>gi|50304895|ref|XP_452403.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690379|sp|Q6CUI6.1|DBP9_KLULA RecName: Full=ATP-dependent RNA helicase DBP9
gi|49641536|emb|CAH01254.1| KLLA0C04576p [Kluyveromyces lactis]
Length = 594
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 14/161 (8%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILE--TSGSSSTIVQIAWIVATAAD- 242
+ A+R G + +P + S I +DI+ ++GS T+ + ++ T D
Sbjct: 26 LSQAIRSIGFK--HPTLIQSSAIPL--ALQEKRDIIAKASTGSGKTLAYLIPVIQTILDH 81
Query: 243 SIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF---GIHTVSLHPGAAIDHQI 299
A + EG + + LV ++E A +V V + L F I ++L G + +
Sbjct: 82 KKADQNDEGATLG----VILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLL 137
Query: 300 TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340
L + PE L++TP +L+ L+ + +++ + LV+D +D
Sbjct: 138 KSLLTENPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVD 178
>gi|428172586|gb|EKX41494.1| hypothetical protein GUITHDRAFT_88396 [Guillardia theta CCMP2712]
Length = 432
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 10/133 (7%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L +V ++E A +V + KA+ GI ++ G + Q L +P +V P RL
Sbjct: 108 LVVVHTRELAYQVAKEFERFKAYLEGITVQCIYGGVPLPQQEASLTKDKPHIVVGCPGRL 167
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDS-LSKGDTLSLIRQSISGKPHTVVFND---CLTYTSV 373
LV KA+D+S + + V+D +D L K D +RQ + +T N C + T
Sbjct: 168 KVLVQRKALDLSRLKIFVIDEVDKVLEKAD----MRQDVQEIFYTTPKNKQTMCFSATLP 223
Query: 374 PAVQNLLLGSINR 386
P ++ ++ + +
Sbjct: 224 PEIKGTVMKFVQK 236
>gi|284038208|ref|YP_003388138.1| DEAD/DEAH box helicase [Spirosoma linguale DSM 74]
gi|283817501|gb|ADB39339.1| DEAD/DEAH box helicase domain protein [Spirosoma linguale DSM 74]
Length = 380
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKA---FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L LV ++E A +V V + A + TV++ G +I+ Q+ LR E +V+TP R
Sbjct: 77 LALVPTRELAVQVAEVFQTFSANLPRKVKTVAVFGGVSINPQMMALRDAE--IVVATPGR 134
Query: 317 LLKLVSLKAIDVSGVSLLVVDRLDSL 342
LL L++ A+ ++ V +LV+D D +
Sbjct: 135 LLDLMASNALQLTDVDILVLDEADKM 160
>gi|159474578|ref|XP_001695402.1| predicted protein [Chlamydomonas reinhardtii]
gi|158275885|gb|EDP01660.1| predicted protein [Chlamydomonas reinhardtii]
Length = 390
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 211 WKCYSSAKDI--LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268
W + +D+ + ++GS T+ +++ AR G GP L L ++E
Sbjct: 41 WPIALAGRDVVAIASTGSGKTL---GYLLPALVQIQARG---GDPALGPSALVLAPTREL 94
Query: 269 AAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDV 328
A + + +P + +V L+ GA+ + Q+ LR+ P +++TP RLL V I +
Sbjct: 95 AKQHQP--QPAAPGSLRSVCLYGGASREEQLAALRT-RPHLVIATPGRLLDFVEAGMIRL 151
Query: 329 SGVSLLVVDRLDSL 342
VS LV+D D +
Sbjct: 152 GQVSYLVLDEADRM 165
>gi|322389250|ref|ZP_08062810.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
parasanguinis ATCC 903]
gi|321143994|gb|EFX39412.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
parasanguinis ATCC 903]
Length = 361
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ V K + G+ T G++ QI L+ PE LV TP R+
Sbjct: 68 LLILAPNTELAGQIFDVTKQWAEPLGLQTQLFLSGSSQKRQIERLKKG-PEILVGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSL 342
+L+ LK I + V +++D D L
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQL 151
>gi|312867651|ref|ZP_07727857.1| DEAD/DEAH box helicase [Streptococcus parasanguinis F0405]
gi|311096714|gb|EFQ54952.1| DEAD/DEAH box helicase [Streptococcus parasanguinis F0405]
Length = 361
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ V K + G+ T G++ QI L+ PE LV TP R+
Sbjct: 68 LLILAPNTELAGQIFDVTKQWAEPLGLQTQLFLSGSSQKRQIERLKKG-PEILVGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSL 342
+L+ LK I + V +++D D L
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQL 151
>gi|419800369|ref|ZP_14325653.1| DEAD/DEAH box helicase [Streptococcus parasanguinis F0449]
gi|385695196|gb|EIG25760.1| DEAD/DEAH box helicase [Streptococcus parasanguinis F0449]
Length = 361
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ V K + G+ T G++ QI L+ PE LV TP R+
Sbjct: 68 LLILAPNTELAGQIFDVTKQWAEPLGLQTQLFLSGSSQKRQIERLKKG-PEILVGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSL 342
+L+ LK I + V +++D D L
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQL 151
>gi|389580571|ref|ZP_10170598.1| DNA/RNA helicase, superfamily II [Desulfobacter postgatei 2ac9]
gi|389402206|gb|EIM64428.1| DNA/RNA helicase, superfamily II [Desulfobacter postgatei 2ac9]
Length = 495
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 13/152 (8%)
Query: 224 SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFG 283
+G S+T + I I S+ R++K P L L ++E ++ K L +
Sbjct: 119 TGKSATFI-ITLIDRFVRTSVKREKKY------PRALILAPTRELVHQIEKDFKGLAKYS 171
Query: 284 -IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
+ V + G Q T L + + +TP RLL +S K ID+S V ++V+D D +
Sbjct: 172 HLRIVPIFGGTDYRKQQTLLTDKPVDVIAATPGRLLDFISKKLIDLSRVEIVVIDEADRM 231
Query: 343 SKGDTLSLIRQSISGKPH-----TVVFNDCLT 369
+ +R+ I PH T+ F+ LT
Sbjct: 232 LDMGFIPDVRRLIYMTPHKDKRQTLFFSATLT 263
>gi|193788232|dbj|BAG53126.1| unnamed protein product [Homo sapiens]
Length = 625
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP + + ++E ++ + CK KA+ + +V+++ G ++ Q L+ E +V TP
Sbjct: 62 GPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGA-EIVVCTP 120
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RL+ V KA ++ VS LV D D +
Sbjct: 121 GRLIDHVKKKATNLQRVSYLVFDEADRM 148
>gi|163791407|ref|ZP_02185817.1| Putative ATP-dependent RNA helicase [Carnobacterium sp. AT7]
gi|159873324|gb|EDP67418.1| Putative ATP-dependent RNA helicase [Carnobacterium sp. AT7]
Length = 435
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 82/172 (47%), Gaps = 12/172 (6%)
Query: 195 VEQDNPLFVNSWGIEFWKCYSSAKD-ILETSGSSSTIVQIAWI-----VATAADSIARKE 248
+E P F N W +K S+ ++ + E + +V I+ VA ++ + E
Sbjct: 2 IENSLPAFKNYWETLAYKEASAIQEKVYEPLKTGKDVVGISPTGTGKTVAYTLPTLEQVE 61
Query: 249 KEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEP 307
+ G ++ L SQE + +V V + + G+ + ++ GA + Q+ L+ +P
Sbjct: 62 AKA----GLQVVILTPSQELSIQVGEVVQEWASQLGLSSQTIIGGANLKRQLDKLKD-KP 116
Query: 308 EFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
E +V TP R+ ++ K + + V +++D D L + + LS +R+ ++ P
Sbjct: 117 EIIVGTPGRIFEISETKKLKLHAVKTVILDEADQLLQQEQLSTVRKLVNKMP 168
>gi|146329072|ref|YP_001209762.1| ATP-dependent rna helicase Rhl [Dichelobacter nodosus VCS1703A]
gi|146232542|gb|ABQ13520.1| ATP-dependent rna helicase Rhl [Dichelobacter nodosus VCS1703A]
Length = 432
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP+ + L ++E A +++ L A+ G+ +++++ G +I+HQ ++C + ++ TP
Sbjct: 82 GPWAIVLAPTRELAIQIKKEMDLLGAYTGLVSLAIYGGTSIEHQKKLFQACNVDVIIGTP 141
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQ 353
R++ L K + + + V+D D + D L+RQ
Sbjct: 142 GRIIDLFKQKVFRLKNIEVCVLDEADRMFDLGFIDDVRYLLRQ 184
>gi|21672635|ref|NP_660702.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25090073|sp|Q8K9H6.1|DEAD_BUCAP RecName: Full=Cold-shock DEAD box protein A homolog; AltName:
Full=ATP-dependent RNA helicase DeaD homolog
gi|21623269|gb|AAM67913.1| ATP-dependent RNA helicase DEAD [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 601
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAID 296
TAA S+ + P +L L ++E A +V + GIH + L+ G +
Sbjct: 57 TAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYE 116
Query: 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
Q+ LR P+ +V TP RLL + +++S + LV+D D +
Sbjct: 117 VQLRALRQG-PQIVVGTPGRLLDHLKRGTLNLSNLYALVLDEADEM 161
>gi|401625757|gb|EJS43750.1| dbp3p [Saccharomyces arboricola H-6]
Length = 517
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 129/314 (41%), Gaps = 55/314 (17%)
Query: 186 IENAMRHDGVEQDNPLFVNS---WGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAAD 242
+++ + + V D+PL +N + S + + + I +AW +
Sbjct: 85 VDDYFKENEVAVDDPLKLNLRPLLSFDHLSLNPSIQAEISKFPKPTPIQAVAWPYLLSGK 144
Query: 243 SIARKEKEG----FSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF---------------G 283
+ + G F+F P + L+ Q+K V P + G
Sbjct: 145 DVVGVAETGSGKTFAFGVPAISHLLDDQKKRGIQVLVISPTRELASQIYDNLIILTNKVG 204
Query: 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-L 342
+ ++ G D Q LR + +V+TP RLL L+ ++D+S V+ LV+D D L
Sbjct: 205 MECCCVYGGVPKDEQRNQLRKSQ--VVVATPGRLLDLLQEGSVDLSQVNYLVLDEADRML 262
Query: 343 SKG---DTLSLIRQSISGKPHTVVFNDCL---------TYTSVPAVQNLLLGSINRLSLN 390
KG D ++IR++ + K T++F T+ + P + +G+ ++L+ N
Sbjct: 263 EKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPI--RVSIGNTDQLTAN 320
Query: 391 QSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEP---LKVLYIVGKDSKFQ 447
+ + I++ V+ E K+L+ ++ +HS P KVL +
Sbjct: 321 KKITQ----IVEVVD-PRGKERKLLELLK--------KYHSGPKKNEKVLIFALYKKEAA 367
Query: 448 NLVSTLKCKGYSIS 461
+ LK GYS++
Sbjct: 368 RVERNLKYNGYSVA 381
>gi|295657321|ref|XP_002789230.1| ATP-dependent RNA helicase DHH1 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226283998|gb|EEH39564.1| ATP-dependent RNA helicase DHH1 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 515
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 67/174 (38%), Gaps = 22/174 (12%)
Query: 207 GIEFWKCYSSAK---DILETSGSSSTIVQIAWI-VATAADSIARKEKEGFSFTGPFL--- 259
G+EF Y + I E + +Q I VA I + K G T F+
Sbjct: 46 GLEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPT 105
Query: 260 -------------LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSC 305
L LV ++E A + VCK L K GI+ + G + I L
Sbjct: 106 LERTNPKNSKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLNEA 165
Query: 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
+V TP R+L L S D+S S V+D D L + +I Q +S P
Sbjct: 166 V-HIIVGTPGRILDLASKGVADLSECSTFVMDEADKLLSPEFTPVIEQLLSFHP 218
>gi|419767486|ref|ZP_14293639.1| type III restriction enzyme, res subunit / helicase C-terminal
domain multi-domain protein [Streptococcus mitis SK579]
gi|383353029|gb|EID30656.1| type III restriction enzyme, res subunit / helicase C-terminal
domain multi-domain protein [Streptococcus mitis SK579]
Length = 360
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK +A + G++ QI L+ PE L+ TP R+
Sbjct: 68 LLILAPNTELAGQIFDVCKTWAEAIDLTAQLFLSGSSQKRQIDRLKKG-PEILIGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP--HTVVFNDCLT 369
+L+ LK I + V +++D D L + + + P H +V+ T
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQLLDDSQIHFVEKITHYAPRDHQLVYMSATT 180
>gi|197336796|ref|YP_002158115.1| ATP-dependent RNA helicase [Vibrio fischeri MJ11]
gi|197314048|gb|ACH63497.1| ATP-dependent RNA helicase [Vibrio fischeri MJ11]
Length = 460
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 94/199 (47%), Gaps = 15/199 (7%)
Query: 216 SAKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
+ KD+L +S GS T+ A+++ S+ K FS P + L ++E A +V
Sbjct: 52 AGKDVLASSKTGSGKTL---AFVLPMLHKSLKTK---SFSKNDPRAVILAPTRELAKQVY 105
Query: 274 SVCKPLKAFGIHTVSLHPGAA-IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332
S + + + +L G + Q+ LR P+F+V+TP RL + +++ + G+
Sbjct: 106 SHLRAMLGGLTYDATLITGGENFNDQVNALRK-HPKFIVATPGRLADHLEHQSLYLDGLE 164
Query: 333 LLVV---DRLDSLSKGDTLSLIRQSISG-KPHTVVFNDCLTYTSVPAVQNLLLGSINRLS 388
L++ DR+ L + L I ++ S + T++F+ L + +V +L + R+S
Sbjct: 165 TLILDEADRMLDLGFAEHLQKIHKAASHRRRQTLMFSATLDHDAVNKFAGNMLDNPKRIS 224
Query: 389 LNQSVASQSACIIQSVNVC 407
+ S + I Q +C
Sbjct: 225 VGLS-NDEHKDITQRFYLC 242
>gi|256847961|ref|ZP_05553405.1| ATP-dependent RNA helicase [Lactobacillus coleohominis 101-4-CHN]
gi|256715021|gb|EEU29998.1| ATP-dependent RNA helicase [Lactobacillus coleohominis 101-4-CHN]
Length = 462
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 265 SQEKAAKVRSVCKPLKAFGIHTVSLH---PGAAIDHQITGLRSCEPEFLVSTPERLLKLV 321
S+E A + + K L F +++H G +HQI L+ +P+ ++ TP R+L L+
Sbjct: 82 SRELATQTYNAAKQLNKFAPEPLTIHNYVGGTDKEHQIEQLKRKQPQLVIGTPGRILDLI 141
Query: 322 SLKAIDVSGVSLLVVDRLD 340
+ A+D+ + V+D D
Sbjct: 142 NSGALDIHLATQFVIDEAD 160
>gi|154497003|ref|ZP_02035699.1| hypothetical protein BACCAP_01296 [Bacteroides capillosus ATCC
29799]
gi|150273402|gb|EDN00530.1| DEAD/DEAH box helicase [Pseudoflavonifractor capillosus ATCC 29799]
Length = 400
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
L L ++E A +++ + L F G+ +V L+ GA I+ QIT L+ P+ +V+TP RL
Sbjct: 84 LVLAPTRELALQIQDELRDLCEFKEGVRSVCLYGGAPIEKQITTLKK-HPQIVVATPGRL 142
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSL 342
+ + + + + V +V+D D +
Sbjct: 143 MDHMKRRTVKLDKVETVVLDEADRM 167
>gi|17537549|ref|NP_496973.1| Protein Y54G11A.3 [Caenorhabditis elegans]
gi|4008449|emb|CAA22456.1| Protein Y54G11A.3 [Caenorhabditis elegans]
Length = 504
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 13/194 (6%)
Query: 185 AIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETS--GSSSTIVQIAWIVATAAD 242
+I +R +G E+ +P+ + W S +D + S GS T+ + +
Sbjct: 94 SIMGEIRKNGFEKPSPI-----QSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDA 148
Query: 243 SIARKEK-EGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITG 301
+A+ EK + PF+L L ++E A ++ K G +V L+ G + Q+
Sbjct: 149 QLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKYSYNGYKSVCLYGGGSRPEQVEA 208
Query: 302 LRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKGDTLSLIRQSISGKPH 360
R E +++TP RL L + I ++ V+ +V+D D L G +++ R +P
Sbjct: 209 CRGGV-EIVIATPGRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRILFEIRPD 267
Query: 361 TVVFNDCLTYTSVP 374
+V LT + P
Sbjct: 268 RLV---ALTSATWP 278
>gi|71002100|ref|XP_755731.1| ATP dependent RNA helicase (Dbp9) [Aspergillus fumigatus Af293]
gi|74675200|sp|Q4X0C2.1|DBP9_ASPFU RecName: Full=ATP-dependent RNA helicase dbp9
gi|66853369|gb|EAL93693.1| ATP dependent RNA helicase (Dbp9), putative [Aspergillus fumigatus
Af293]
gi|159129787|gb|EDP54901.1| ATP dependent RNA helicase (Dbp9), putative [Aspergillus fumigatus
A1163]
Length = 649
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 15/207 (7%)
Query: 217 AKDILE--TSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS 274
KDIL +GS T + I+ T I +K+ S L LV ++E A +V+S
Sbjct: 94 GKDILARAKTGSGKTAAYVLPILQT----ILQKKAADPSLKATTGLILVPTRELAEQVQS 149
Query: 275 VCKPLKAF---GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331
V AF + +V+L + Q T L P+ +VSTP R++ + A+ + +
Sbjct: 150 VIIKFSAFCGKDVRSVNLTQKVSDAVQRTMLADY-PDLIVSTPARVIANLGTSALSLENL 208
Query: 332 SLLVVDRLD-SLSKG--DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLS 388
+ LV+D D LS G + ++ + ++I T + + LT + V ++ L S L
Sbjct: 209 THLVIDEADLVLSYGYDEDINALAKAIPRGVQTFLMSATLT-SEVDTLKGLFCRSPVILK 267
Query: 389 LNQSVASQSACIIQSVNVCASDEEKIL 415
L + + A I Q V CA DE+ +L
Sbjct: 268 L-EDKEDEGAGISQFVVRCAEDEKFLL 293
>gi|59713736|ref|YP_206511.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
gi|59481984|gb|AAW87623.1| ATP-dependent RNA helicase [Vibrio fischeri ES114]
Length = 460
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 94/199 (47%), Gaps = 15/199 (7%)
Query: 216 SAKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
+ KD+L +S GS T+ A+++ S+ K FS P + L ++E A +V
Sbjct: 52 AGKDVLASSKTGSGKTL---AFVLPMLHKSLKTK---SFSKNDPRAVILAPTRELAKQVY 105
Query: 274 SVCKPLKAFGIHTVSLHPGAA-IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332
S + + + +L G + Q+ LR P+F+V+TP RL + +++ + G+
Sbjct: 106 SHLRAMLGGLTYDATLITGGENFNDQVNALRK-HPKFIVATPGRLADHLEHQSLYLDGLE 164
Query: 333 LLVV---DRLDSLSKGDTLSLIRQSISG-KPHTVVFNDCLTYTSVPAVQNLLLGSINRLS 388
L++ DR+ L + L I ++ S + T++F+ L + +V +L + R+S
Sbjct: 165 TLILDEADRMLDLGFAEHLQKIHKAASHRRRQTLMFSATLDHDAVNKFAGNMLDNPKRIS 224
Query: 389 LNQSVASQSACIIQSVNVC 407
+ S + I Q +C
Sbjct: 225 VGLS-NDEHKDITQRFYLC 242
>gi|346971615|gb|EGY15067.1| ATP-dependent RNA helicase dbp9 [Verticillium dahliae VdLs.17]
Length = 609
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 9/163 (5%)
Query: 259 LLFLVSSQEKAAKVRSVCKPLKAF---GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
+L LV ++E A +V + L AF I V L + Q L S P+ ++STP
Sbjct: 105 VLMLVPTRELADQVHRSIESLAAFCAKDIQAVKLTDKVSTTVQ-RALLSANPDIVISTPA 163
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLD-SLSKG--DTLSLIRQSISGKPHTVVFNDCLTYTS 372
R VS A+ ++ ++ LV+D D LS G + L + +S+ T++ + LT
Sbjct: 164 RAWDNVSSSALSLANLTHLVLDEADLVLSYGYKEDLQNVARSLPKGVQTILMSATLT-PE 222
Query: 373 VPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKIL 415
V V+ L + L L Q A + I Q V CA DE+ +L
Sbjct: 223 VDTVKGLFCRNPALLDLEQPEA-EGDGITQFVVKCAEDEKFLL 264
>gi|209518020|ref|ZP_03266851.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
gi|209501524|gb|EEA01549.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
Length = 532
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 18/175 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P +L L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 129 PTMLVLTPTRELAMQVTTAAA---TYGKHLKRLRTVSILGGVAYGQQLM-LLAKNPEILV 184
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--DTLSLIRQSISGKPHTVVFNDCL 368
+TP RL+ + ID+S + +LV+D D L G D + I T++F+ L
Sbjct: 185 ATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIDDIDTIVAETPATRQTMLFSATL 244
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDH 423
+ ++ LL R+ + Q + Q I Q+V+ + K ++LDH
Sbjct: 245 D-GKIGSLTGRLLKDPERIEIVQRM-EQRTNIAQTVHYVDDRDHK----DRLLDH 293
>gi|374320107|ref|YP_005073236.1| RNA helicase yqfR [Paenibacillus terrae HPL-003]
gi|357199116|gb|AET57013.1| RNA helicase yqfR [Paenibacillus terrae HPL-003]
Length = 464
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 260 LFLVSSQEKAAK-VRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L SQE A + VR + + GI + L GAA++ QI L+ P+ +V TP R+
Sbjct: 75 LILAPSQELAMQIVREGRRYGEHRGIRVLGLIGGAAVNRQIEKLKD-HPQLVVGTPGRVR 133
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL 342
+L++ K + + ++ +V+D +D +
Sbjct: 134 ELIASKKLKMHNITTIVIDEVDQM 157
>gi|319957241|ref|YP_004168504.1| dead/deah box helicase domain-containing protein [Nitratifractor
salsuginis DSM 16511]
gi|319419645|gb|ADV46755.1| DEAD/DEAH box helicase domain protein [Nitratifractor salsuginis
DSM 16511]
Length = 421
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 74/153 (48%), Gaps = 28/153 (18%)
Query: 254 FTGPFLLFLVSS--QEKAAKVRS------------VCKPLKAFG----IHTVSLHPGAAI 295
FT P L L+ + Q KA +VR+ V + ++ +G I + ++ G I
Sbjct: 60 FTLPLLERLIQNPRQMKARQVRALVLTPTRELAAQVAESVRTYGKNLKIRSTVVYGGVGI 119
Query: 296 DHQITGL-RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQS 354
+ Q + R CE +++TP RLL L + +AID+S + L++D D + + I++
Sbjct: 120 EPQKRAIARGCE--IVIATPGRLLDLANQRAIDLSALETLILDEADRMLDMGFIHDIKKI 177
Query: 355 ISGKP---HTVVFNDCLTYTSVPAVQNLLLGSI 384
I+ P T++F+ + P ++ L G +
Sbjct: 178 IAQTPKERQTLLFSATFS----PEIKRLAAGML 206
>gi|418028611|ref|ZP_12667169.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNCM I-1630]
gi|354686831|gb|EHE86956.1| ATP-dependent RNA helicase [Streptococcus thermophilus CNCM I-1630]
Length = 522
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
G+ S++ G++I+ QI LRS +V TP RLL L+ KA+ ++ + L++D D +
Sbjct: 97 GVKVRSVYGGSSIEKQIKALRSGA-HIVVGTPGRLLDLIKRKALKLNNIETLILDEADEM 155
Query: 343 SKGDTLSLIRQSISGKP---HTVVFNDCL 368
L I IS P T++F+ +
Sbjct: 156 LNMGFLEDIEAIISQVPEERQTLLFSATM 184
>gi|422871103|ref|ZP_16917596.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK1087]
gi|328946059|gb|EGG40205.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis SK1087]
Length = 363
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ VCK + G+ L G + QI L+ PE ++ TP R+
Sbjct: 70 LLILAPNTELAGQIFEVCKTWAEPLGLTAQLLLSGFSQKRQIERLKKG-PEIIIGTPGRI 128
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSL 342
+LV LK I + V +++D D L
Sbjct: 129 FELVKLKKIKMMNVETIILDEFDQL 153
>gi|312883052|ref|ZP_07742783.1| ATP-dependent RNA helicase [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369212|gb|EFP96733.1| ATP-dependent RNA helicase [Vibrio caribbenthicus ATCC BAA-2122]
Length = 443
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 15/199 (7%)
Query: 216 SAKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
+ KD+L +S GS T+ A+++ S+ K FS P L L ++E A +V
Sbjct: 37 AGKDLLASSKTGSGKTL---AFVLPILHKSLKNK---SFSAKDPRALILAPTRELAKQVY 90
Query: 274 SVCKPLKAFGIHTVSLHPGAA-IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332
K + + SL G + Q+ LR P+F+V+TP RL + +++ + G+
Sbjct: 91 GELKSMLGGLSYDASLIVGGENFNDQVKALRRY-PKFIVATPGRLADHLEHRSLFLDGLE 149
Query: 333 LLVVDRLDS-LSKGDTLSLIRQSISGKP---HTVVFNDCLTYTSVPAVQNLLLGSINRLS 388
LV+D D L G L R ++ K T++F+ L + V + +L + R++
Sbjct: 150 TLVLDEADRMLDLGFAPELRRIHMAAKHRRRQTLMFSATLDHADVNDIALEMLDAPKRIA 209
Query: 389 LNQSVASQSACIIQSVNVC 407
++ A + I Q +C
Sbjct: 210 IDIGSA-EHKDISQKFYLC 227
>gi|334882571|emb|CCB83603.1| ATP-dependent RNA helicase [Lactobacillus pentosus MP-10]
Length = 444
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 97/235 (41%), Gaps = 36/235 (15%)
Query: 219 DILETSGSSSTIVQIAWIVATAADSIARKEK----------EGFSFTGPFL--------- 259
D+ +T +++ +++ I A+ +A + + +FT P L
Sbjct: 3 DVFKTKFAAAGFTELSPIQTAVAEPLAAGQSVLGLAPTGSGKTLAFTWPMLEKLRVGEGT 62
Query: 260 --LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L L SQE A + +V + + +++ GA + Q+ L+ PE +V TP R
Sbjct: 63 QALILAPSQELAMQTTNVVREWGQLIDAKVLAITGGANVKRQMEKLKK-HPEVIVGTPGR 121
Query: 317 LLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAV 376
+ L++ I + + +++VD D L +TL IR+ + F + L A
Sbjct: 122 ITNLIADGKIKLGHLKMMIVDEADELLTDETLDQIREILDA-----TFAETLQLGFFSAT 176
Query: 377 QNLLLGSINRL------SLNQSVASQSACIIQSVNVCASDEEKI--LKGIQVLDH 423
+ +L + R ++ Q+ +++ + + ++ LK I +DH
Sbjct: 177 ETKILDELPRWFGQHVEKIDVRAIDQTQGVVRHRTMQVGNRHRVDLLKRISRVDH 231
>gi|295676852|ref|YP_003605376.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295436695|gb|ADG15865.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 544
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 18/175 (10%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIH-----TVSLHPGAAIDHQITGLRSCEPEFLV 311
P +L L ++E A +V + +G H TVS+ G A Q+ L + PE LV
Sbjct: 129 PTMLVLTPTRELAMQVTTAAA---TYGKHLKRLRTVSILGGVAYGQQLM-LLAKNPEILV 184
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSKG--DTLSLIRQSISGKPHTVVFNDCL 368
+TP RL+ + ID+S + +LV+D D L G D + I T++F+ L
Sbjct: 185 ATPGRLIDHLERGRIDLSQLQILVLDEADRMLDMGFIDDIDTIVAETPATRQTMLFSATL 244
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDH 423
+ ++ LL R+ + Q + Q I Q+V+ + K ++LDH
Sbjct: 245 D-GKIGSLTGRLLKDPERIEIVQRM-EQRTNISQTVHYVDDRDHK----DRLLDH 293
>gi|193785182|dbj|BAG54335.1| unnamed protein product [Homo sapiens]
Length = 674
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP + + ++E ++ + CK KA+ + +V+++ G ++ Q L+ E +V TP
Sbjct: 62 GPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGA-EIVVCTP 120
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RL+ V KA ++ VS LV D D +
Sbjct: 121 GRLIDHVKKKATNLQRVSYLVFDEADRM 148
>gi|449910781|ref|ZP_21794880.1| ATP-dependent RNA helicase [Streptococcus mutans OMZ175]
gi|449259079|gb|EMC56625.1| ATP-dependent RNA helicase [Streptococcus mutans OMZ175]
Length = 517
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 26/135 (19%)
Query: 227 SSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHT 286
++ +VQ A ++A + + ++E F F +EK KVRSV
Sbjct: 66 TNNVVQ-ALVIAPTRELAVQSQEELFRF----------GREKKVKVRSV----------- 103
Query: 287 VSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGD 346
+ G++I+ QI L+S +V TP RLL L+ KA+ ++ V L++D D +
Sbjct: 104 ---YGGSSIEKQIKALKSG-AHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMG 159
Query: 347 TLSLIRQSISGKPHT 361
L I IS P T
Sbjct: 160 FLEDIEAIISRVPET 174
>gi|377831555|ref|ZP_09814527.1| ATP-dependent RNA helicase [Lactobacillus mucosae LM1]
gi|377554618|gb|EHT16325.1| ATP-dependent RNA helicase [Lactobacillus mucosae LM1]
Length = 441
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
+L L SQE A + +V + G+ SL GA + Q+ L+ P+ +V TP R+
Sbjct: 64 ILVLEPSQELAIQTATVMREWANLIGVKVRSLTGGANLRRQVAMLKKQHPDVVVGTPGRV 123
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLI 351
L ++ + + + + LV+D D L + DT +++
Sbjct: 124 LHMLDNRDLKLDRLKTLVIDEADDLLRDDTQAVV 157
>gi|345876776|ref|ZP_08828539.1| hypothetical protein Rifp1Sym_ag00100 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344226165|gb|EGV52505.1| hypothetical protein Rifp1Sym_ag00100 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 547
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 260 LFLVSSQEKAAKV-RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L ++E AA+V SV + K + + + G I+ QI LR + LV+TP RLL
Sbjct: 140 LVLTPTRELAAQVGESVEQYGKYLPLKSTVIFGGVKINPQIEKLRHGV-DILVATPGRLL 198
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPH 360
VS K +D+S + +LV+D D + + IR+ + PH
Sbjct: 199 DHVSQKTLDLSHIEILVLDEADRMLDMGFIHDIRKVLRLLPH 240
>gi|336063871|ref|YP_004558730.1| ATP-dependent RNA helicase [Streptococcus pasteurianus ATCC 43144]
gi|334282071|dbj|BAK29644.1| ATP-dependent RNA helicase [Streptococcus pasteurianus ATCC 43144]
Length = 526
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
G+ S++ G++I+ QI LRS +V TP RLL L+ KA+ + V L++D D +
Sbjct: 97 GVKVRSVYGGSSIEKQIKALRSGA-HIVVGTPGRLLDLIKRKALKLDHVETLILDEADEM 155
Query: 343 SKGDTLSLIRQSISGKPHT 361
L I IS P T
Sbjct: 156 LNMGFLEDIEAIISRVPET 174
>gi|258648442|ref|ZP_05735911.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
tannerae ATCC 51259]
gi|260851194|gb|EEX71063.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
tannerae ATCC 51259]
Length = 484
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 76/159 (47%), Gaps = 18/159 (11%)
Query: 308 EFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD---SLSKGDTLSLIRQSISGKPHTVVF 364
+ +++TP RLL + L D+S + LV+D D + D + I + + + T++F
Sbjct: 133 DIVIATPGRLLTHLDLGTFDLSRTTHLVLDEADRMLDMGFSDDILKIVKHLPEQRQTILF 192
Query: 365 NDCLTYTSVPAVQNLLLGSI--NRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLD 422
+ ++PA L I N ++ +++ + I QS+ +C +++ ++
Sbjct: 193 S-----ATMPAKIRELAHKIMHNPEEVSIAISKPAENIRQSLFICKENDK-----TAIIK 242
Query: 423 HAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS 461
H + D +P +V+ G K + L TLK KGY++
Sbjct: 243 HLFADQ---KPERVIIFCGSKQKVKELNITLKRKGYNVE 278
>gi|346723372|ref|YP_004850041.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citrumelo
F1]
gi|346648119|gb|AEO40743.1| ATP-dependent RNA helicase [Xanthomonas axonopodis pv. citrumelo
F1]
Length = 453
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 122/281 (43%), Gaps = 29/281 (10%)
Query: 154 HLNGKSCANGHHGQACEKLDCPSKFLILCLNAI-ENAMRHDGVEQDNPLFVNSWGIEFWK 212
H + CA+ + + L L L + E+A+ GV P+ V
Sbjct: 12 HARRRQCADN------RAMSLKADLLSLQLQPVFESALARAGVHALTPIQV-----AMIP 60
Query: 213 CYSSAKDILET--SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAA 270
+A+D++ T +GS T+ A+ + + E+ G L LV ++E A
Sbjct: 61 PMLAARDLIATAQTGSGKTL---AYALPLLQQRLQAPEQAPRVLGG---LILVPTRELVA 114
Query: 271 KVRSVCKPLKAF---GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
+V L A + V+ G AI+ Q+ LR + +++TP RLL LV+ A+
Sbjct: 115 QVAQTLLSLAAALPRRLKIVAATGGEAINPQLMALRGGA-DIVIATPGRLLDLVTHNALR 173
Query: 328 VSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSI 384
+S VS LV+ DRL L G L I + + +V+ + ++ ++ L
Sbjct: 174 LSQVSTLVLDEADRLLDLGFGAELDRILALLPAQRQSVLVSATFP-AAIASLAKRRLRDP 232
Query: 385 NRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAY 425
R++L+ + A +++ V A ++L+ + +L+H +
Sbjct: 233 LRITLDATPEQAPAIAQRAIAVDAGQRTQLLRHL-LLEHGW 272
>gi|340718889|ref|XP_003397895.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Bombus
terrestris]
Length = 662
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
GP +L L ++E A ++ GI V ++ G Q+ + E +++TP
Sbjct: 324 GPTVLVLAPTRELALQIEKEVNKYSYHGIKAVCVYGGGCRKKQVDVVTEG-VEIVIATPG 382
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RL LV + +DVS VS LV+D D +
Sbjct: 383 RLNDLVRTEVLDVSTVSYLVLDEADRM 409
>gi|340617059|ref|YP_004735512.1| DEAD/DEAH box helicase [Zobellia galactanivorans]
gi|339731856|emb|CAZ95123.1| DEAD/DEAH RNA helicase [Zobellia galactanivorans]
Length = 385
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 14/202 (6%)
Query: 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSV 275
S KD++ + ++ T A+++ +A K+ G L +V ++E A +V S
Sbjct: 78 SGKDLIGIA-ATGTGKTAAFLIPIVQQMLASKDTTG--------LVVVPTRELAQQVYSE 128
Query: 276 CKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335
K L + + G ++ + L P +V TP RL L+ KA++ S+LV
Sbjct: 129 FKSLTKGTALSAACFIGGTSVNKDSSLARRNPSLIVGTPGRLNDLIDRKALNTQARSVLV 188
Query: 336 VDRLDSLSKGDTLSLIRQSIS---GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQS 392
+D D + + IR+ +S G+ T++F+ + S V N ++G R+S++
Sbjct: 189 LDEFDRMLDMGFIKDIRKIVSGMHGRRQTMLFSATVD-PSQERVINEIIGDPLRISVSSG 247
Query: 393 VASQSACIIQSVNVCASDEEKI 414
S S + QS+ DE K
Sbjct: 248 TKS-SDNVDQSIIRVGRDENKF 268
>gi|392948259|ref|ZP_10313870.1| ATP-dependent RNA helicase [Lactobacillus pentosus KCA1]
gi|339637196|emb|CCC16085.1| ATP-dependent RNA helicase [Lactobacillus pentosus IG1]
gi|392436465|gb|EIW14378.1| ATP-dependent RNA helicase [Lactobacillus pentosus KCA1]
Length = 444
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 97/235 (41%), Gaps = 36/235 (15%)
Query: 219 DILETSGSSSTIVQIAWIVATAADSIARKEK----------EGFSFTGPFL--------- 259
D+ +T +++ +++ I A+ +A + + +FT P L
Sbjct: 3 DVFKTKFAAAGFTELSPIQTAVAEPLAAGQSVLGLAPTGSGKTLAFTWPMLEKLRVGEGT 62
Query: 260 --LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316
L L SQE A + +V + + +++ GA + Q+ L+ PE +V TP R
Sbjct: 63 QALILAPSQELAMQTTNVVREWGQLIDAKVLAITGGANVKRQMEKLKK-HPEVIVGTPGR 121
Query: 317 LLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAV 376
+ L++ I + + +++VD D L +TL IR+ + F + L A
Sbjct: 122 ITNLIADGKIKLGHLKMMIVDEADELLTDETLDQIREILDA-----TFAETLQLGFFSAT 176
Query: 377 QNLLLGSINRL------SLNQSVASQSACIIQSVNVCASDEEKI--LKGIQVLDH 423
+ +L + R ++ Q+ +++ + + ++ LK I +DH
Sbjct: 177 ETKILDELPRWFGQHVEKIDVRAIDQTQGVVRHRTMQVGNRHRVDLLKRISRVDH 231
>gi|308070585|ref|YP_003872190.1| RNA helicase yqfR [Paenibacillus polymyxa E681]
gi|305859864|gb|ADM71652.1| Probable RNA helicase yqfR [Paenibacillus polymyxa E681]
Length = 463
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 260 LFLVSSQEKAAK-VRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L SQE A + VR + + GI + L GAAI QI L+ P+ +V TP R+
Sbjct: 75 LILAPSQELAMQIVREGQRYGEHRGIRVLGLIGGAAIKRQIEKLKD-HPQLVVGTPGRVR 133
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL 342
+L++ K + + ++ +V+D +D +
Sbjct: 134 ELIASKKLKMHNITAIVIDEVDQM 157
>gi|148974049|ref|ZP_01811582.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
bacterium SWAT-3]
gi|145965746|gb|EDK30994.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrionales
bacterium SWAT-3]
Length = 443
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 86/199 (43%), Gaps = 15/199 (7%)
Query: 216 SAKDILETS--GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
+ KD+L +S GS T+ + ++ A + A FS P + L ++E A +V
Sbjct: 37 AGKDLLASSKTGSGKTLAFVLPMIHKALKTKA------FSARDPRGVILAPTRELAKQVY 90
Query: 274 SVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332
+ L + G + Q+ LR P F+V+TP RL + +++ + V
Sbjct: 91 GELRSMLGGLSYEAALILGGENFNDQVKALRKY-PRFIVATPGRLADHLEHRSLFLDSVE 149
Query: 333 LLVVDRLDSLSKGDTLSLIRQSISGKPH----TVVFNDCLTYTSVPAVQNLLLGSINRLS 388
L++D D + +R+ + H T++F+ L + V + N +L + R+S
Sbjct: 150 TLILDEADRMLDLGFAPELRRIANAAKHRRRQTLMFSATLDHAEVNDIANEMLDAPKRIS 209
Query: 389 LNQSVASQSACIIQSVNVC 407
+ S Q I Q +C
Sbjct: 210 VGVS-NEQHLDITQKFYLC 227
>gi|449952218|ref|ZP_21808893.1| ATP-dependent RNA helicase [Streptococcus mutans 11SSST2]
gi|449165426|gb|EMB68434.1| ATP-dependent RNA helicase [Streptococcus mutans 11SSST2]
Length = 517
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 26/135 (19%)
Query: 227 SSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHT 286
++ +VQ A ++A + + ++E F F +EK KVRSV
Sbjct: 66 TNNVVQ-ALVIAPTRELAVQSQEELFRF----------GREKKVKVRSV----------- 103
Query: 287 VSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGD 346
+ G++I+ QI L+S +V TP RLL L+ KA+ ++ V L++D D +
Sbjct: 104 ---YGGSSIEKQIKALKSG-AHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMG 159
Query: 347 TLSLIRQSISGKPHT 361
L I IS P T
Sbjct: 160 FLEDIEAIISRVPET 174
>gi|452825333|gb|EME32330.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 442
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-L 342
+ T L+ G I I L+ P +V TP R+L L KA+D+S V V+D D L
Sbjct: 149 VRTAVLYGGVPIKQHIDRLKQSPPHIVVGTPGRVLDLSRRKALDISSVQFFVLDECDKML 208
Query: 343 SKGDTLSLIRQSISGKPH 360
+ D +++ PH
Sbjct: 209 EQLDMRRDVQEIFRMTPH 226
>gi|450047104|ref|ZP_21839304.1| ATP-dependent RNA helicase [Streptococcus mutans N34]
gi|449197930|gb|EMB99069.1| ATP-dependent RNA helicase [Streptococcus mutans N34]
Length = 517
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 26/135 (19%)
Query: 227 SSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHT 286
++ +VQ A ++A + + ++E F F +EK KVRSV
Sbjct: 66 TNNVVQ-ALVIAPTRELAVQSQEELFRF----------GREKKVKVRSV----------- 103
Query: 287 VSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGD 346
+ G++I+ QI L+S +V TP RLL L+ KA+ ++ V L++D D +
Sbjct: 104 ---YGGSSIEKQIKALKSG-AHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMG 159
Query: 347 TLSLIRQSISGKPHT 361
L I IS P T
Sbjct: 160 FLEDIEAIISRVPET 174
>gi|384227801|ref|YP_005619546.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
gi|345538741|gb|AEO08718.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
Length = 600
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAID 296
TAA S+ + P +L L ++E A +V + GIH + L+ G +
Sbjct: 57 TAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYE 116
Query: 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
Q+ LR P+ +V TP RLL + +++S + LV+D D +
Sbjct: 117 LQLRALRQG-PQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEM 161
>gi|292670294|ref|ZP_06603720.1| ATP-dependent RNA helicase DeaD [Selenomonas noxia ATCC 43541]
gi|292648025|gb|EFF65997.1| ATP-dependent RNA helicase DeaD [Selenomonas noxia ATCC 43541]
Length = 425
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L + ++E A ++ V +PL + GI T+ ++ GA I+ Q LR P+ ++ TP RLL
Sbjct: 74 LVIAPTRELAIQIARVAEPLGEPLGIGTIVIYGGADIERQKEKLRR-RPQLVIGTPGRLL 132
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSLSK 344
V + + V+ +V+D D + K
Sbjct: 133 DHVRRGTLALGSVNKIVLDEADEMLK 158
>gi|222153378|ref|YP_002562555.1| DEAD box helicase family protein [Streptococcus uberis 0140J]
gi|222114191|emb|CAR42728.1| DEAD box helicase family protein [Streptococcus uberis 0140J]
Length = 561
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
G+ S++ G++ID QI L+S +V TP RLL L+ KA+ + V L++D D +
Sbjct: 119 GVKVRSVYGGSSIDKQIKALKSG-AHIVVGTPGRLLDLIKRKALKLDHVETLILDEADEM 177
Query: 343 SKGDTLSLIRQSISGKP---HTVVFNDCL 368
L I IS P T++F+ +
Sbjct: 178 LNMGFLEDIEAIISRVPSERQTLLFSATM 206
>gi|450003648|ref|ZP_21826168.1| ATP-dependent RNA helicase [Streptococcus mutans N29]
gi|449182133|gb|EMB84176.1| ATP-dependent RNA helicase [Streptococcus mutans N29]
Length = 517
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 26/135 (19%)
Query: 227 SSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHT 286
++ +VQ A ++A + + ++E F F +EK KVRSV
Sbjct: 66 TNNVVQ-ALVIAPTRELAVQSQEELFRF----------GREKKVKVRSV----------- 103
Query: 287 VSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGD 346
+ G++I+ QI L+S +V TP RLL L+ KA+ ++ V L++D D +
Sbjct: 104 ---YGGSSIEKQIKALKSG-AHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMG 159
Query: 347 TLSLIRQSISGKPHT 361
L I IS P T
Sbjct: 160 FLEDIEAIISRVPET 174
>gi|449921723|ref|ZP_21799071.1| ATP-dependent RNA helicase [Streptococcus mutans 1SM1]
gi|449156658|gb|EMB60119.1| ATP-dependent RNA helicase [Streptococcus mutans 1SM1]
Length = 517
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 26/135 (19%)
Query: 227 SSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHT 286
++ +VQ A ++A + + ++E F F +EK KVRSV
Sbjct: 66 TNNVVQ-ALVIAPTRELAVQSQEELFRF----------GREKKVKVRSV----------- 103
Query: 287 VSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGD 346
+ G++I+ QI L+S +V TP RLL L+ KA+ ++ V L++D D +
Sbjct: 104 ---YGGSSIEKQIKALKSG-AHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMG 159
Query: 347 TLSLIRQSISGKPHT 361
L I IS P T
Sbjct: 160 FLEDIEAIISRVPET 174
>gi|392427583|ref|YP_006468577.1| DNA/RNA helicase, superfamily II [Desulfosporosinus acidiphilus
SJ4]
gi|391357546|gb|AFM43245.1| DNA/RNA helicase, superfamily II [Desulfosporosinus acidiphilus
SJ4]
Length = 488
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
+ L ++E A +V + F GIH++ ++ G ID QI LR P +V+TP RL+
Sbjct: 74 IVLAPTRELAVQVAEELNKIGQFKGIHSLPIYGGQNIDWQIRALRK-RPHIIVATPGRLM 132
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL 342
+ + I ++ + ++V+D D +
Sbjct: 133 DHMRRRTIRLNEIKIVVLDEADEM 156
>gi|403216375|emb|CCK70872.1| hypothetical protein KNAG_0F02050 [Kazachstania naganishii CBS
8797]
Length = 533
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 16/161 (9%)
Query: 211 WKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268
W S KD++ +GS T+ A+ V A + I K + +G L + ++E
Sbjct: 152 WPYLLSGKDVIGVAETGSGKTL---AFGVP-AVNHIIETSK---TVSGIQALIISPTREL 204
Query: 269 AAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
A+++ PL G+ ++ G D Q LR C +V+TP RLL L+ +++
Sbjct: 205 ASQIYDNLIPLTDKVGLECCCVYGGVPKDEQRMKLRKCH--IVVATPGRLLDLLQEGSVN 262
Query: 328 VSGVSLLVVDRLDS-LSKG---DTLSLIRQSISGKPHTVVF 364
+S V+ LV+D D L KG D ++IR++ T++F
Sbjct: 263 LSKVNYLVLDEADRMLEKGFEEDIKNIIRETAPHGRQTLMF 303
>gi|110638284|ref|YP_678493.1| ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC 33406]
gi|110280965|gb|ABG59151.1| possible ATP-dependent RNA helicase [Cytophaga hutchinsonii ATCC
33406]
Length = 388
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 11/89 (12%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFG------IHTVSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A +V V +AF I +++++ G +I+ Q+ L+ E L++T
Sbjct: 85 LVLVPTRELAVQVGQV---FQAFSNALPNKIKSLAVYGGVSINPQMIQLQGVE--ILIAT 139
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
P RLL LV KA+ +S V +LV+D D +
Sbjct: 140 PGRLLDLVDSKAVYLSDVEVLVLDEADKM 168
>gi|449889270|ref|ZP_21787529.1| ATP-dependent RNA helicase [Streptococcus mutans SA41]
gi|450039476|ref|ZP_21836209.1| ATP-dependent RNA helicase [Streptococcus mutans T4]
gi|449200387|gb|EMC01417.1| ATP-dependent RNA helicase [Streptococcus mutans T4]
gi|449250267|gb|EMC48338.1| ATP-dependent RNA helicase [Streptococcus mutans SA41]
Length = 517
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 26/135 (19%)
Query: 227 SSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHT 286
++ +VQ A ++A + + ++E F F +EK KVRSV
Sbjct: 66 TNNVVQ-ALVIAPTRELAVQSQEELFRF----------GREKKVKVRSV----------- 103
Query: 287 VSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGD 346
+ G++I+ QI L+S +V TP RLL L+ KA+ ++ V L++D D +
Sbjct: 104 ---YGGSSIEKQIKALKSG-AHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMG 159
Query: 347 TLSLIRQSISGKPHT 361
L I IS P T
Sbjct: 160 FLEDIEAIISRVPET 174
>gi|417917401|ref|ZP_12560960.1| type III restriction enzyme, res subunit [Streptococcus
parasanguinis SK236]
gi|342830038|gb|EGU64377.1| type III restriction enzyme, res subunit [Streptococcus
parasanguinis SK236]
Length = 361
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL 317
LL L + E A ++ V K + G+ T G++ QI L+ PE LV TP R+
Sbjct: 68 LLILAPNTELAGQIFDVTKQWAEPLGLQTQLFLSGSSQKRQIERLKKG-PEILVGTPGRI 126
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSL 342
+L+ LK I + V +++D D L
Sbjct: 127 FELIKLKKIKMMNVETIILDEFDQL 151
>gi|395218269|ref|ZP_10401928.1| DEAD/DEAH box helicase [Pontibacter sp. BAB1700]
gi|394454639|gb|EJF09256.1| DEAD/DEAH box helicase [Pontibacter sp. BAB1700]
Length = 380
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 260 LFLVSSQEKAAKVRSVCKPLKAFG------IHTVSLHPGAAIDHQITGLRSCEPEFLVST 313
L LV ++E A ++ V +AFG + T++++ G +I+ Q+ L + LV+T
Sbjct: 77 LVLVPTRELAVQIEEV---FRAFGKGLGRPVKTLAVYGGISINPQMMKLSGTD--VLVAT 131
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
P RLL L+ KA+ +S V LV+D D +
Sbjct: 132 PGRLLDLIENKAVHLSEVETLVLDEADKM 160
>gi|330831232|ref|YP_004394184.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
gi|423208115|ref|ZP_17194669.1| hypothetical protein HMPREF1169_00187 [Aeromonas veronii AER397]
gi|328806368|gb|AEB51567.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
B565]
gi|404619162|gb|EKB16078.1| hypothetical protein HMPREF1169_00187 [Aeromonas veronii AER397]
Length = 406
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 260 LFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L LV ++E A +V + K +A G+ V+L G A + Q L + P+ LV+TP RL
Sbjct: 72 LVLVPTRELAIQVTAALKEGAEALGLRIVTLCGGVAQERQQAEL-ALGPQLLVATPGRLR 130
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL 342
L++ + + + G+ LLV+D D L
Sbjct: 131 DLLTQQVLGLDGLQLLVLDEADRL 154
>gi|310643767|ref|YP_003948525.1| DEAD/DEAH box helicase [Paenibacillus polymyxa SC2]
gi|309248717|gb|ADO58284.1| DEAD/DEAH box helicase domain protein [Paenibacillus polymyxa SC2]
gi|392304504|emb|CCI70867.1| DEAD-box ATP-dependent RNA helicase 42 [Paenibacillus polymyxa M1]
Length = 463
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 260 LFLVSSQEKAAK-VRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L SQE A + VR + + GI + L GAAI QI L+ P+ +V TP R+
Sbjct: 75 LILAPSQELAMQIVREGQRYGEHRGIRVLGLIGGAAIKRQIEKLKD-HPQLVVGTPGRVR 133
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL 342
+L++ K + + ++ +V+D +D +
Sbjct: 134 ELIASKKLKMHNITTIVIDEVDQM 157
>gi|152995724|ref|YP_001340559.1| DEAD/DEAH box helicase [Marinomonas sp. MWYL1]
gi|150836648|gb|ABR70624.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
Length = 448
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 9/180 (5%)
Query: 248 EKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHT-VSLHPGAAIDHQITGLRSCE 306
+K+ S P ++ LV ++E A +V + L A T + + G + Q L+ +
Sbjct: 65 KKKALSKRDPRVVILVPTRELAKQVFGQLRLLLAASRFTSILIQGGENFNDQHKSLQK-D 123
Query: 307 PEFLVSTPERLLKLVSLKAIDVSGVSLLVV---DRLDSLSKGDTLSLIRQSISGKP-HTV 362
P F+V+TP RL+ + + + + G+ LLV+ DR+ L D + I + S + T+
Sbjct: 124 PHFIVATPGRLVDHLKQRHVFLEGLELLVLDEADRMLDLGFADAMRAINSAASHRQRQTL 183
Query: 363 VFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC--ASDEEKILKGIQV 420
F+ L T + + LL +R+++ Q + I Q V +C +E +LK + V
Sbjct: 184 FFSATLDNTEISEIAGELLREPSRVAIGQGF-DEHTDISQHVLLCDHLDHKEALLKHLLV 242
>gi|449933031|ref|ZP_21803081.1| ATP-dependent RNA helicase [Streptococcus mutans 3SN1]
gi|449160654|gb|EMB63903.1| ATP-dependent RNA helicase [Streptococcus mutans 3SN1]
Length = 517
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 26/135 (19%)
Query: 227 SSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHT 286
++ +VQ A ++A + + ++E F F +EK KVRSV
Sbjct: 66 TNNVVQ-ALVIAPTRELAVQSQEELFRF----------GREKKVKVRSV----------- 103
Query: 287 VSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGD 346
+ G++I+ QI L+S +V TP RLL L+ KA+ ++ V L++D D +
Sbjct: 104 ---YGGSSIEKQIKALKSG-AHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMG 159
Query: 347 TLSLIRQSISGKPHT 361
L I IS P T
Sbjct: 160 FLEDIEAIISRVPET 174
>gi|397649329|ref|YP_006489856.1| ATP-dependent RNA helicase [Streptococcus mutans GS-5]
gi|449878432|ref|ZP_21783625.1| ATP-dependent RNA helicase [Streptococcus mutans S1B]
gi|449895693|ref|ZP_21789519.1| ATP-dependent RNA helicase [Streptococcus mutans SF12]
gi|449917524|ref|ZP_21797265.1| ATP-dependent RNA helicase [Streptococcus mutans 15JP3]
gi|449938016|ref|ZP_21804845.1| ATP-dependent RNA helicase [Streptococcus mutans 2ST1]
gi|449945061|ref|ZP_21806953.1| ATP-dependent RNA helicase [Streptococcus mutans 11A1]
gi|449966513|ref|ZP_21812374.1| ATP-dependent RNA helicase [Streptococcus mutans 15VF2]
gi|449977205|ref|ZP_21816455.1| ATP-dependent RNA helicase [Streptococcus mutans 11VS1]
gi|449980880|ref|ZP_21817468.1| ATP-dependent RNA helicase [Streptococcus mutans 5SM3]
gi|449992425|ref|ZP_21822308.1| ATP-dependent RNA helicase [Streptococcus mutans NVAB]
gi|449998174|ref|ZP_21824217.1| ATP-dependent RNA helicase [Streptococcus mutans A9]
gi|450011428|ref|ZP_21829171.1| ATP-dependent RNA helicase [Streptococcus mutans A19]
gi|450026596|ref|ZP_21831935.1| ATP-dependent RNA helicase [Streptococcus mutans U138]
gi|450078617|ref|ZP_21851083.1| ATP-dependent RNA helicase [Streptococcus mutans N3209]
gi|450116641|ref|ZP_21864588.1| ATP-dependent RNA helicase [Streptococcus mutans ST1]
gi|450156792|ref|ZP_21878776.1| ATP-dependent RNA helicase [Streptococcus mutans 21]
gi|450183346|ref|ZP_21888598.1| ATP-dependent RNA helicase [Streptococcus mutans 24]
gi|392602898|gb|AFM81062.1| ATP-dependent RNA helicase [Streptococcus mutans GS-5]
gi|449148200|gb|EMB52105.1| ATP-dependent RNA helicase [Streptococcus mutans 11A1]
gi|449154166|gb|EMB57774.1| ATP-dependent RNA helicase [Streptococcus mutans 15JP3]
gi|449163543|gb|EMB66645.1| ATP-dependent RNA helicase [Streptococcus mutans 2ST1]
gi|449170036|gb|EMB72776.1| ATP-dependent RNA helicase [Streptococcus mutans 15VF2]
gi|449174867|gb|EMB77327.1| ATP-dependent RNA helicase [Streptococcus mutans 11VS1]
gi|449176330|gb|EMB78682.1| ATP-dependent RNA helicase [Streptococcus mutans 5SM3]
gi|449179705|gb|EMB81898.1| ATP-dependent RNA helicase [Streptococcus mutans NVAB]
gi|449181162|gb|EMB83284.1| ATP-dependent RNA helicase [Streptococcus mutans A9]
gi|449189536|gb|EMB91191.1| ATP-dependent RNA helicase [Streptococcus mutans A19]
gi|449189635|gb|EMB91281.1| ATP-dependent RNA helicase [Streptococcus mutans U138]
gi|449209834|gb|EMC10332.1| ATP-dependent RNA helicase [Streptococcus mutans N3209]
gi|449226812|gb|EMC26299.1| ATP-dependent RNA helicase [Streptococcus mutans ST1]
gi|449235283|gb|EMC34247.1| ATP-dependent RNA helicase [Streptococcus mutans 21]
gi|449243483|gb|EMC41906.1| ATP-dependent RNA helicase [Streptococcus mutans 24]
gi|449249495|gb|EMC47615.1| ATP-dependent RNA helicase [Streptococcus mutans S1B]
gi|449254168|gb|EMC52091.1| ATP-dependent RNA helicase [Streptococcus mutans SF12]
Length = 517
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 26/135 (19%)
Query: 227 SSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHT 286
++ +VQ A ++A + + ++E F F +EK KVRSV
Sbjct: 66 TNNVVQ-ALVIAPTRELAVQSQEELFRF----------GREKKVKVRSV----------- 103
Query: 287 VSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGD 346
+ G++I+ QI L+S +V TP RLL L+ KA+ ++ V L++D D +
Sbjct: 104 ---YGGSSIEKQIKALKSG-AHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMG 159
Query: 347 TLSLIRQSISGKPHT 361
L I IS P T
Sbjct: 160 FLEDIEAIISRVPET 174
>gi|220934849|ref|YP_002513748.1| DEAD/DEAH box helicase domain-containing protein [Thioalkalivibrio
sulfidophilus HL-EbGr7]
gi|219996159|gb|ACL72761.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio
sulfidophilus HL-EbGr7]
Length = 447
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Query: 257 PFLLFLVSSQEKAAKV-RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPE 315
P L L ++E AA+V SV K + ++ + G I+ QI LR + + +V+TP
Sbjct: 80 PRCLVLTPTRELAAQVHESVETYGKYLTLRSLVMFGGVNINPQIRALRG-QVDIIVATPG 138
Query: 316 RLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RLL K +D+SGV +LV+D D +
Sbjct: 139 RLLDHAGQKTVDLSGVEILVLDEADRM 165
>gi|421858472|ref|ZP_16290740.1| DNA and RNA helicase [Paenibacillus popilliae ATCC 14706]
gi|410832006|dbj|GAC41177.1| DNA and RNA helicase [Paenibacillus popilliae ATCC 14706]
Length = 421
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 20/208 (9%)
Query: 260 LFLVSSQEKAAKVRSVCKPLK------AFGIHTVSLHPGAAIDHQITGLR-SCEPEFLVS 312
L + ++E A ++ + K L + GIH ++ + G ++ QI L+ +C+ ++
Sbjct: 32 LIVAPTRELALQITAEAKKLTDSAQDGSGGIHVLAAYGGQDVEKQIRKLQGACQ--LVIG 89
Query: 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTS 372
TP RL + D SG+ +LV+D D + L + I+ P L +
Sbjct: 90 TPGRLTDHLRRGTFDGSGIRMLVLDEADQMLHMGFLPEVEDVIAHTPSN--RQTILCSAT 147
Query: 373 VPAVQNLLLGSINRLSLNQSVASQSACI--IQSVNVCASDEEKILKGIQVLDHAYGDHFH 430
+P L R L+ V ++ + I+ + V +D K ++LD +H
Sbjct: 148 MPQPVRALAARFMRSPLDLRVEAEQVTVKDIRQLVVETTDRAKPETLFRLLD----EH-- 201
Query: 431 SEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
P + + + Q L LK KGY
Sbjct: 202 -RPYQAVIFCRTKRRAQKLYEALKAKGY 228
>gi|390595526|gb|EIN04931.1| RNA helicase [Punctularia strigosozonata HHB-11173 SS5]
Length = 434
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 94/213 (44%), Gaps = 24/213 (11%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFG----IHTVSLHPGAAIDHQITGLRSCEPEFLV 311
GP L L ++E A +++ C FG I +++ GA QI L+ E ++
Sbjct: 169 GPIALVLAPTRELAVQIQQECT---KFGTNSRIRNTAIYGGAPKGPQIRDLQRGV-EIVI 224
Query: 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KP--HTVVFNDCL 368
+TP RL+ ++ + ++ V+ LV+D D + IR+ + +P T++F
Sbjct: 225 ATPGRLIDMLETQKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVGQIRPDRQTLMF---- 280
Query: 369 TYTSVPAVQNL---LLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAY 425
+ T VQ L L ++++ S + I Q V VC SD EK K I+ L
Sbjct: 281 SATWPKDVQRLAMDFLKDFIQVNIGSMELSANHNIKQIVEVC-SDFEKRTKLIKHL---- 335
Query: 426 GDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
D E KVL VG ++ L+ G+
Sbjct: 336 -DQISQENAKVLIFVGTKRVADDITKYLRQDGW 367
>gi|448113511|ref|XP_004202369.1| Piso0_001861 [Millerozyma farinosa CBS 7064]
gi|359465358|emb|CCE89063.1| Piso0_001861 [Millerozyma farinosa CBS 7064]
Length = 623
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
+ LV ++ +V+S L K + VS +I + L++ EP+ ++STP RL+
Sbjct: 261 IILVPTKPLITQVKSTMSQLSKGTSLRIVSFKSDISIQEEARKLKAHEPDVIISTPGRLV 320
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL 342
+ +S +D+S + LV+D D L
Sbjct: 321 EHLSNNTLDLSALRFLVIDEADRL 344
>gi|225685109|gb|EEH23393.1| ATP-dependent RNA helicase dhh1 [Paracoccidioides brasiliensis
Pb03]
Length = 515
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 67/174 (38%), Gaps = 22/174 (12%)
Query: 207 GIEFWKCYSSAK---DILETSGSSSTIVQIAWI-VATAADSIARKEKEGFSFTGPFL--- 259
G+EF Y + I E + +Q I VA I + K G T F+
Sbjct: 46 GLEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPT 105
Query: 260 -------------LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSC 305
L LV ++E A + VCK L K GI+ + G + I L
Sbjct: 106 LERTNPKNSKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQDDIIRLNEA 165
Query: 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
+V TP R+L L S D+S S V+D D L + +I Q +S P
Sbjct: 166 V-HIIVGTPGRILDLASKGVADLSECSTFVMDEADKLLSPEFTPVIEQLLSFHP 218
>gi|450121873|ref|ZP_21866488.1| ATP-dependent RNA helicase [Streptococcus mutans ST6]
gi|449228714|gb|EMC28070.1| ATP-dependent RNA helicase [Streptococcus mutans ST6]
Length = 517
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 26/135 (19%)
Query: 227 SSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHT 286
++ +VQ A ++A + + ++E F F +EK KVRSV
Sbjct: 66 TNNVVQ-ALVIAPTRELAVQSQEELFRF----------GREKKVKVRSV----------- 103
Query: 287 VSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGD 346
+ G++I+ QI L+S +V TP RLL L+ KA+ ++ V L++D D +
Sbjct: 104 ---YGGSSIEKQIKALKSG-AHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMG 159
Query: 347 TLSLIRQSISGKPHT 361
L I IS P T
Sbjct: 160 FLEDIEAIISRVPET 174
>gi|450112586|ref|ZP_21863225.1| ATP-dependent RNA helicase [Streptococcus mutans SM6]
gi|449221937|gb|EMC21684.1| ATP-dependent RNA helicase [Streptococcus mutans SM6]
Length = 517
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 26/135 (19%)
Query: 227 SSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHT 286
++ +VQ A ++A + + ++E F F +EK KVRSV
Sbjct: 66 TNNVVQ-ALVIAPTRELAVQSQEELFRF----------GREKKVKVRSV----------- 103
Query: 287 VSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGD 346
+ G++I+ QI L+S +V TP RLL L+ KA+ ++ V L++D D +
Sbjct: 104 ---YGGSSIEKQIKALKSG-AHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMG 159
Query: 347 TLSLIRQSISGKPHT 361
L I IS P T
Sbjct: 160 FLEDIEAIISRVPET 174
>gi|450037665|ref|ZP_21835841.1| ATP-dependent RNA helicase [Streptococcus mutans M21]
gi|449192015|gb|EMB93458.1| ATP-dependent RNA helicase [Streptococcus mutans M21]
Length = 517
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 26/135 (19%)
Query: 227 SSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHT 286
++ +VQ A ++A + + ++E F F +EK KVRSV
Sbjct: 66 TNNVVQ-ALVIAPTRELAVQSQEELFRF----------GREKKVKVRSV----------- 103
Query: 287 VSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGD 346
+ G++I+ QI L+S +V TP RLL L+ KA+ ++ V L++D D +
Sbjct: 104 ---YGGSSIEKQIKALKSG-AHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMG 159
Query: 347 TLSLIRQSISGKPHT 361
L I IS P T
Sbjct: 160 FLEDIEAIISRVPET 174
>gi|24379088|ref|NP_721043.1| ATP-dependent RNA helicase, DEAD-box family [Streptococcus mutans
UA159]
gi|387786557|ref|YP_006251653.1| ATP-dependent RNA helicase [Streptococcus mutans LJ23]
gi|449868045|ref|ZP_21779892.1| ATP-dependent RNA helicase [Streptococcus mutans U2B]
gi|449873594|ref|ZP_21781776.1| ATP-dependent RNA helicase [Streptococcus mutans 8ID3]
gi|449900440|ref|ZP_21791449.1| ATP-dependent RNA helicase [Streptococcus mutans R221]
gi|449905661|ref|ZP_21793153.1| ATP-dependent RNA helicase [Streptococcus mutans M230]
gi|449987637|ref|ZP_21820439.1| ATP-dependent RNA helicase [Streptococcus mutans NFSM2]
gi|450054177|ref|ZP_21841677.1| ATP-dependent RNA helicase [Streptococcus mutans NFSM1]
gi|450064682|ref|ZP_21845431.1| ATP-dependent RNA helicase [Streptococcus mutans NLML5]
gi|450074791|ref|ZP_21849420.1| ATP-dependent RNA helicase [Streptococcus mutans M2A]
gi|450084208|ref|ZP_21853214.1| ATP-dependent RNA helicase [Streptococcus mutans N66]
gi|450103709|ref|ZP_21859410.1| ATP-dependent RNA helicase [Streptococcus mutans SF1]
gi|450108165|ref|ZP_21861307.1| ATP-dependent RNA helicase [Streptococcus mutans SF14]
gi|450161259|ref|ZP_21880452.1| ATP-dependent RNA helicase [Streptococcus mutans 66-2A]
gi|450172283|ref|ZP_21884450.1| ATP-dependent RNA helicase [Streptococcus mutans SM4]
gi|450178263|ref|ZP_21886619.1| ATP-dependent RNA helicase [Streptococcus mutans SM1]
gi|24376988|gb|AAN58349.1|AE014905_2 putative ATP-dependent RNA helicase, DEAD-box family [Streptococcus
mutans UA159]
gi|379132958|dbj|BAL69710.1| ATP-dependent RNA helicase [Streptococcus mutans LJ23]
gi|449153879|gb|EMB57510.1| ATP-dependent RNA helicase [Streptococcus mutans 8ID3]
gi|449175876|gb|EMB78251.1| ATP-dependent RNA helicase [Streptococcus mutans NFSM2]
gi|449197934|gb|EMB99072.1| ATP-dependent RNA helicase [Streptococcus mutans NFSM1]
gi|449203267|gb|EMC04138.1| ATP-dependent RNA helicase [Streptococcus mutans NLML5]
gi|449208651|gb|EMC09229.1| ATP-dependent RNA helicase [Streptococcus mutans M2A]
gi|449212021|gb|EMC12405.1| ATP-dependent RNA helicase [Streptococcus mutans N66]
gi|449217050|gb|EMC17127.1| ATP-dependent RNA helicase [Streptococcus mutans SF1]
gi|449220963|gb|EMC20781.1| ATP-dependent RNA helicase [Streptococcus mutans SF14]
gi|449238898|gb|EMC37638.1| ATP-dependent RNA helicase [Streptococcus mutans 66-2A]
gi|449242989|gb|EMC41471.1| ATP-dependent RNA helicase [Streptococcus mutans SM1]
gi|449243022|gb|EMC41497.1| ATP-dependent RNA helicase [Streptococcus mutans SM4]
gi|449257367|gb|EMC55046.1| ATP-dependent RNA helicase [Streptococcus mutans R221]
gi|449258022|gb|EMC55626.1| ATP-dependent RNA helicase [Streptococcus mutans M230]
gi|449263316|gb|EMC60715.1| ATP-dependent RNA helicase [Streptococcus mutans U2B]
Length = 517
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 26/135 (19%)
Query: 227 SSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHT 286
++ +VQ A ++A + + ++E F F +EK KVRSV
Sbjct: 66 TNNVVQ-ALVIAPTRELAVQSQEELFRF----------GREKKVKVRSV----------- 103
Query: 287 VSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGD 346
+ G++I+ QI L+S +V TP RLL L+ KA+ ++ V L++D D +
Sbjct: 104 ---YGGSSIEKQIKALKSG-AHIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMG 159
Query: 347 TLSLIRQSISGKPHT 361
L I IS P T
Sbjct: 160 FLEDIEAIISRVPET 174
>gi|386087169|ref|YP_006003043.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
thermophilus ND03]
gi|386345260|ref|YP_006041424.1| ATP-dependent RNA helicase [Streptococcus thermophilus JIM 8232]
gi|387910270|ref|YP_006340576.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
thermophilus MN-ZLW-002]
gi|312278882|gb|ADQ63539.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
thermophilus ND03]
gi|339278721|emb|CCC20469.1| ATP-dependent RNA helicase [Streptococcus thermophilus JIM 8232]
gi|387575205|gb|AFJ83911.1| ATP-dependent RNA helicase, dead/deah box family [Streptococcus
thermophilus MN-ZLW-002]
Length = 528
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
G+ S++ G++I+ QI LRS +V TP RLL L+ KA+ ++ + L++D D +
Sbjct: 97 GVKVRSVYGGSSIEKQIKALRSGA-HIVVGTPGRLLDLIKRKALKLNNIETLILDEADEM 155
Query: 343 SKGDTLSLIRQSISGKP---HTVVFNDCL 368
L I IS P T++F+ +
Sbjct: 156 LNMGFLEDIEAIISRVPEERQTLLFSATM 184
>gi|384226687|ref|YP_005618438.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
gi|311087784|gb|ADP67863.1| ATP-dependent RNA helicase DeaD [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 601
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAID 296
TAA S+ + P +L L ++E A +V + GIH + L+ G +
Sbjct: 57 TAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYE 116
Query: 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
Q+ LR P+ +V TP RLL + +++S + LV+D D +
Sbjct: 117 LQLRALRQG-PQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEM 161
>gi|383759689|ref|YP_005438675.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
gi|381380359|dbj|BAL97176.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
Length = 414
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 27/134 (20%)
Query: 260 LFLVSSQEKA--------AKVRSVCKPLKA---FGIHTVSLHPGAAIDHQITGLRSCEPE 308
L LV ++E A A R + +P+K FG G +++ Q+ GLR E
Sbjct: 79 LLLVPTRELAVQAGQTLRAMAREMAEPVKVAVVFG--------GVSVNPQMMGLRGGA-E 129
Query: 309 FLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL---SKGDTLSLIRQSISGKPHTVVFN 365
+V+TP RLL LV A+ + V LLV+D D L D L + + + ++F+
Sbjct: 130 VVVATPGRLLDLVERNALQLGEVQLLVLDEADRLLDDGFADELERVLALLPAERQQLLFS 189
Query: 366 DCLTYTSVPAVQNL 379
T PAVQ L
Sbjct: 190 ----ATFPPAVQAL 199
>gi|119614682|gb|EAW94276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 42, isoform CRA_a [Homo
sapiens]
Length = 828
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP + + ++E ++ + CK KA+ + +V+++ G ++ Q L+ E +V TP
Sbjct: 216 GPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGA-EIVVCTP 274
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RL+ V KA ++ VS LV D D +
Sbjct: 275 GRLIDHVKKKATNLQRVSYLVFDEADRM 302
>gi|94309401|ref|YP_582611.1| RNA helicase [Cupriavidus metallidurans CH34]
gi|93353253|gb|ABF07342.1| RNA helicase [Cupriavidus metallidurans CH34]
Length = 540
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 260 LFLVSSQEKAAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL 318
L L ++E AA+V SV K + ++ + G I+ QI LR + +V+TP RLL
Sbjct: 86 LVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGVGINPQIEALRRGV-DIVVATPGRLL 144
Query: 319 KLVSLKAIDVSGVSLLVVDRLDSL 342
V+ + ID+S V LLV+D D +
Sbjct: 145 DHVAQRTIDLSHVELLVLDEADRM 168
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,887,791,173
Number of Sequences: 23463169
Number of extensions: 268155765
Number of successful extensions: 847426
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 3706
Number of HSP's that attempted gapping in prelim test: 845490
Number of HSP's gapped (non-prelim): 5046
length of query: 474
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 328
effective length of database: 8,933,572,693
effective search space: 2930211843304
effective search space used: 2930211843304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 79 (35.0 bits)