BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011963
(474 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54CD6|DDX5_DICDI Probable ATP-dependent RNA helicase ddx5 OS=Dictyostelium
discoideum GN=ddx5 PE=3 SV=1
Length = 697
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 13/167 (7%)
Query: 211 WKCYSSAKDILETS--GSSSTIVQIAWIVATAADSIARK-------EKEGFSFTGPFLLF 261
W + DI+ TS GS T+ +A ++ + R EK +TG +L
Sbjct: 237 WPAILTGHDIIGTSLPGSGKTLGYLAPMIPHCLARVDRGGKNKITGEKAPKQYTGILVLV 296
Query: 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKL 320
LV ++E +V S + + FGI T ++ G + + QI L +P+ L+STP RL+++
Sbjct: 297 LVPTRELGLQVHSNTLIITQLFGIKTSVIYGGISKNLQIEQLEKEKPQILISTPGRLIEM 356
Query: 321 VSLKAIDVSGVSLLVVDRLDS-LSKG--DTLSLIRQSISGKPHTVVF 364
+ +D+S V++LV+D D LSKG L IR I ++F
Sbjct: 357 IENGHVDLSSVTMLVLDEADKMLSKGLIPQLKQIRGQIRPDSQNILF 403
>sp|Q5BDW4|PRP5_EMENI Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=prp5 PE=3 SV=1
Length = 1173
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 15/222 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 614 GPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIIVCTP 672
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 673 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSNVRPDRQTVLFSATF 732
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V VC ++E+K ++ +++L + Y
Sbjct: 733 PRNMEALARKTLTKPIEIVVGGRSVVAPE--ITQIVEVC-NEEKKFVRLLELLGNLYSTD 789
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+E + L V + L+ L KGY SI G + I
Sbjct: 790 -ENEDARSLIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQI 830
>sp|Q4WT99|PRP5_ASPFU Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=prp5 PE=3 SV=1
Length = 1211
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 124/282 (43%), Gaps = 25/282 (8%)
Query: 198 DNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFT 255
+NP + S I S +D++ +GS TI A+++ R ++ +
Sbjct: 596 ENPTSIQSQAI---PAIMSGRDVIGVAKTGSGKTI---AFLIPMFRH--IRDQRPLENME 647
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 648 GPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIVVCTP 706
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 707 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATF 766
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V V D K ++ +++L + Y D
Sbjct: 767 PRNMEALARKSLTKPIEIVVGGKSVVAPE--ITQIVEVRNED-TKFVRLLEILGNLYSDD 823
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+ E + L V + L+ L KGY SI G + I
Sbjct: 824 AN-EDARALIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQI 864
>sp|A1D373|PRP5_NEOFI Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=prp5 PE=3 SV=1
Length = 1193
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 124/282 (43%), Gaps = 25/282 (8%)
Query: 198 DNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFT 255
+NP + S I S +D++ +GS TI A+++ R ++ +
Sbjct: 578 ENPTSIQSQAI---PAIMSGRDVIGVAKTGSGKTI---AFLIPMFRH--IRDQRPLENME 629
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 630 GPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIVVCTP 688
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 689 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATF 748
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V V D K ++ +++L + Y D
Sbjct: 749 PRNMEALARKSLTKPIEIVVGGKSVVAPE--ITQIVEVRNED-TKFVRLLEILGNLYSDD 805
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+ E + L V + L+ L KGY SI G + I
Sbjct: 806 AN-EDARALIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQI 846
>sp|Q1DHB2|PRP5_COCIM Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Coccidioides
immitis (strain RS) GN=PRP5 PE=3 SV=1
Length = 1197
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 126/292 (43%), Gaps = 27/292 (9%)
Query: 188 NAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIA 245
+ +R G EQ P + S I S +D++ +GS TI + + D
Sbjct: 572 DVIRKLGYEQ--PTSIQSQAI---PAIMSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRP 626
Query: 246 RKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRS 304
+ EG P L + ++E A ++ CKP LKA + V + GA I QI L+
Sbjct: 627 LENMEG-----PVGLIMTPTRELATQIHKECKPFLKALNLRAVCAYGGAPIKDQIAELKR 681
Query: 305 CEPEFLVSTPERLLKLV---SLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KP- 359
E +V TP R++ L+ S + ++ V+ +V+D D + + + IS +P
Sbjct: 682 GA-EIIVCTPGRMIDLLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIISNIRPS 740
Query: 360 -HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGI 418
TV+F+ + L + + +SV +Q I Q V V + K ++ +
Sbjct: 741 RQTVLFSATFPRNMEALARKTLTKPVEIIVGGRSVVAQE--ITQIVEV-RPENTKFVRLL 797
Query: 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
++L + Y D ++E + L V + L+ L KGY SI G + +
Sbjct: 798 ELLGNLYSDD-NNEDARALIFVDRQEAADGLLRDLMRKGYPCMSIHGGKDQV 848
>sp|A7ENE0|PRP5_SCLS1 Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=prp5
PE=3 SV=1
Length = 1114
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 17/222 (7%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA G+ V + GA I QI L+ E +V TP
Sbjct: 556 GPIGLIMTPTRELATQIHKECKPFLKAMGLRAVCAYGGAIIKDQIADLKRGA-EIIVCTP 614
Query: 315 ERLLKLV---SLKAIDVSGVSLLVVDRLDSL-SKGDTLSLIR--QSISGKPHTVVFNDCL 368
R+++L+ S + ++ V+ +V+D D + G +++ +I T++F+ +
Sbjct: 615 GRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIRPNRQTILFSATM 674
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L + + +SV + I Q V V ++EK + +++L Y
Sbjct: 675 PRIMDALAKKTLQSPVEIVVGGRSVVAPE--ITQIVEV-REEKEKFHRLLELLGELYN-- 729
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
E + L V + K +L+ L KGY SI G + +
Sbjct: 730 -ADEDARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKDQV 770
>sp|A6RW79|PRP5_BOTFB Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Botryotinia
fuckeliana (strain B05.10) GN=prp5 PE=3 SV=1
Length = 1151
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 17/222 (7%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA G+ V + GA I QI L+ E +V TP
Sbjct: 627 GPIGLIMTPTRELATQIHKECKPFLKAMGLRAVCAYGGAIIKDQIADLKRGA-EIIVCTP 685
Query: 315 ERLLKLV---SLKAIDVSGVSLLVVDRLDSL-SKGDTLSLIR--QSISGKPHTVVFNDCL 368
R+++L+ S + ++ V+ +V+D D + G +++ +I T++F+ +
Sbjct: 686 GRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMGFEPQVMKVFNNIRPNRQTILFSATM 745
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L + + +SV + I Q V V ++EK + +++L Y
Sbjct: 746 PRIMDALAKKTLQSPVEIVVGGRSVVAPE--ITQIVEV-REEKEKFHRLLELLGELYN-- 800
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
E + L V + K +L+ L KGY SI G + +
Sbjct: 801 -TDEDARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKDQV 841
>sp|A1CQA9|PRP5_ASPCL Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=prp5 PE=3 SV=1
Length = 1192
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 15/222 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 630 GPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGA-EIVVCTP 688
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 689 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATF 748
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V V D K ++ +++L + Y D
Sbjct: 749 PRNMEALARKALTKPIEIIVGGRSVVAPE--ITQIVEVRNED-TKFVRLLEILGNLYSDD 805
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+ E + L V + L+ L KGY SI G + I
Sbjct: 806 AN-EDARSLIFVERQEAADALLRELMRKGYPCMSIHGGKDQI 846
>sp|A2QQA8|PRP5_ASPNC Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus
niger (strain CBS 513.88 / FGSC A1513) GN=prp5 PE=3 SV=2
Length = 1180
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 15/222 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 620 GPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGA-EIIVCTP 678
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 679 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANIRPDRQTVLFSATF 738
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428
+ L I + +SV + I Q V V +D++K ++ +++L + Y
Sbjct: 739 PRNMEALARKTLTKPIEIVVGGKSVVAPE--ITQIVEV-RNDDQKFVRLLELLGNLYSSD 795
Query: 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+E + L V + L+ L KGY SI G + I
Sbjct: 796 -ENEDARALIFVDRQEAADALLRELMRKGYPCMSIHGGKDQI 836
>sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Gibberella
zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL
31084) GN=PRP5 PE=3 SV=2
Length = 1207
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 103/224 (45%), Gaps = 21/224 (9%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LK G+ V + GA I QI L+ E +V TP
Sbjct: 650 GPIGLIMTPTRELAVQIHKDCKPFLKMMGLRAVCAYGGAPIREQIAELKRGA-EIIVCTP 708
Query: 315 ERLLKLVSL---KAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ + ++ V+ +V+D D + G +++ + +P T++F+
Sbjct: 709 GRMIDLLAANQGRVTNLKRVTYVVLDEADRMFDMGFEPQVMKIFANMRPDRQTILFS--- 765
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHAYG 426
++P + + L + + + +V +S A I+ + + K + +++L Y
Sbjct: 766 --ATMPRIIDSLTKKVLKNPIEVTVGGRSVVAKEIEQIVEVRDEPSKFHRVLELLGELYD 823
Query: 427 DHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
E + L V + K +L+ L KGY SI G + I
Sbjct: 824 ---RDEDARTLIFVERQEKADDLLKELMMKGYPCMSIHGGKDQI 864
>sp|Q2U2J6|PRP5_ASPOR Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) GN=prp5 PE=3 SV=1
Length = 1186
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 27/228 (11%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 627 GPVGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIADLKRGA-EIIVCTP 685
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 686 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILANVRPDKQTVLFSATF 745
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVA------SQSACIIQSVNVCASDEEKILKGIQVLD 422
+ ++ R +LN+ V S A I + S+++K ++ +++L
Sbjct: 746 PRN---------MEALARKTLNKPVEIVVGGRSVVAPEITQIVEVRSEDKKFIRLLELLG 796
Query: 423 HAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+ Y +E + L V + L+ L KGY SI G + I
Sbjct: 797 NLYSTD-ENEDARALIFVERQEGADTLLRELMRKGYPCMSIHGGKDQI 843
>sp|Q10MH8|RH24_ORYSJ DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp.
japonica GN=Os03g0308500 PE=2 SV=1
Length = 770
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 116/255 (45%), Gaps = 24/255 (9%)
Query: 216 SAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273
S +DI+ +GS T + ++ D +++EG P + ++E A ++
Sbjct: 255 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEG-----PIGVVCAPTRELAHQIY 309
Query: 274 SVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVSTPERLLKLVSLKAIDVSGV 331
K K + + +++ G + Q L++ CE +++TP RL+ L+ +KA+ +
Sbjct: 310 LEAKKFAKPYNLRVAAVYGGVSKFDQFKELKAGCE--IVIATPGRLIDLLKMKALKMFRA 367
Query: 332 SLLVVDRLDSLSKGDTLSLIRQSISG--KP--HTVVFNDCLTYTSVPAVQNLLLGSINRL 387
+ LV+D D + IR SI G +P T++F+ + Y + +L I R+
Sbjct: 368 TYLVLDEADRMFDLGFEPQIR-SIVGQIRPDRQTLLFSATMPYKVERLAREILTDPI-RV 425
Query: 388 SLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQ 447
++ Q V S + I Q VNV SD EK+ ++ L D VL K ++
Sbjct: 426 TVGQ-VGSANEDIKQVVNVLPSDAEKMPWLLEKLPGMIDDG------DVLVFAAKKARVD 478
Query: 448 NLVSTLKCKGYSIST 462
+ S L +G+ I+
Sbjct: 479 EIESQLNQRGFRIAA 493
>sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42 OS=Dictyostelium
discoideum GN=ddx42 PE=3 SV=1
Length = 986
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 9/163 (5%)
Query: 256 GPFLLFLVSSQEKAAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVST 313
GP LFL ++E A ++ K K F + T L+ G + Q L++ CE +V+T
Sbjct: 378 GPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCE--IIVAT 435
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTY 370
P RL+ ++ LKA ++ VS LV+D D + G + I + T++F+
Sbjct: 436 PGRLIDMIKLKATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLFSATFK- 494
Query: 371 TSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEK 413
+V +L ++S+ + S ++ I Q V V SD +K
Sbjct: 495 PNVEEFARTILSDPIKISIGM-IGSANSDITQIVQVLKSDSDK 536
>sp|Q0D1K3|PRP5_ASPTN Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=prp5 PE=3 SV=1
Length = 1181
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 124/288 (43%), Gaps = 37/288 (12%)
Query: 198 DNPLFVNSWGIEFWKCYSSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFT 255
+NP + S I S +D++ +GS T+ + + D + EG
Sbjct: 570 ENPTSIQSQAI---PAIMSGRDVIGVAKTGSGKTVAFLIPMFRHIKDQRPLENMEG---- 622
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
P L + ++E A ++ CKP LKA + V + GA I QI L+ E +V TP
Sbjct: 623 -PIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKRGA-EIVVCTP 680
Query: 315 ERLLKLVSLKAIDVSG---VSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ A V+ V+ +V+D D + G +++ + +P TV+F+
Sbjct: 681 GRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKIMANVRPDRQTVLFSATF 740
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVA------SQSACIIQSVNVCASDEEKILKGIQVLD 422
+ ++ R +LN+ V S A I + ++++K ++ +++L
Sbjct: 741 PRN---------MEALARKTLNKPVEIVVGGKSVVAPEITQIVEVRNEDKKFVRLLELLG 791
Query: 423 HAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY---SISTGSNCI 467
+ Y +E + L V + L+ L KGY SI G + I
Sbjct: 792 NLYSSD-ENEDARALIFVERQEAADTLLRELMRKGYPCMSIHGGKDQI 838
>sp|Q9P7C7|PRP11_SCHPO Pre-mRNA-processing ATP-dependent RNA helicase prp11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp11 PE=3 SV=1
Length = 1014
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 110/256 (42%), Gaps = 25/256 (9%)
Query: 215 SSAKDIL--ETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272
+S +D++ +GS TI + + D K EG P + + ++E A ++
Sbjct: 453 TSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEG-----PIAIIMTPTRELAVQI 507
Query: 273 RSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331
CKP LK I + GA I QI L+ E +V TP R++ ++S A V+ +
Sbjct: 508 FRECKPFLKLLNIRACCAYGGAPIKDQIADLKRGA-EIVVCTPGRMIDVLSANAGRVTNL 566
Query: 332 ---SLLVVDRLDSL-SKGDTLSLIR--QSISGKPHTVVFNDCLTYTSVPAVQNLLLGSIN 385
+ LV+D D + G ++R +I TV+F+ + P L +
Sbjct: 567 HRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFS-----ATFPRAMEALARKVL 621
Query: 386 RLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKD 443
+ + +V +S A ++ + +E K + +++L Y + ++ L V +
Sbjct: 622 KKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLLELLGELYNNQLD---VRTLVFVDRQ 678
Query: 444 SKFQNLVSTLKCKGYS 459
L+S L +GY+
Sbjct: 679 ESADALLSDLMKRGYT 694
>sp|O22907|RH24_ARATH DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana
GN=RH24 PE=1 SV=2
Length = 760
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 11/165 (6%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVST 313
GP + ++E A ++ K KA+G+ +++ G + Q L++ CE +V+T
Sbjct: 301 GPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCE--IVVAT 358
Query: 314 PERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG--KP--HTVVFNDCLT 369
P RL+ ++ +KA+ + S LV+D D + +R SI G +P T++F+ +
Sbjct: 359 PGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVR-SIVGQIRPDRQTLLFSATMP 417
Query: 370 YTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKI 414
+ + +L I R+++ + V + I Q VNV SD EK+
Sbjct: 418 WKVEKLAREILSDPI-RVTVGE-VGMANEDITQVVNVIPSDAEKL 460
>sp|Q89AF9|DEAD_BUCBP Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=deaD PE=3 SV=1
Length = 602
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPL--KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
P +L L ++E A +V K G+H ++L+ G D Q+ LR P+ +V TP
Sbjct: 75 PQILVLTPTRELAVQVAEAFSNFSKKLIGVHVLALYGGQRYDLQLKSLRKG-PQIIVGTP 133
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKG---DTLSLIRQSISGKPHTVVFNDCL 368
RLL + + + +S + LV+D D + + + + I I + T +F+ +
Sbjct: 134 GRLLDHLKRRTLSLSNLHSLVLDEADEMLRMGFIEDVETIMTEIPDRHQTALFSATM 190
>sp|Q2UFL0|DBP9_ASPOR ATP-dependent RNA helicase dbp9 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=dbp9 PE=3 SV=1
Length = 605
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 15/207 (7%)
Query: 217 AKDILE--TSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS 274
KDIL +GS T + I+ T I +K+ SF L LV ++E A +V++
Sbjct: 64 GKDILARAKTGSGKTAAYVLPILQT----ILQKKATDPSFKATTGLILVPTRELAEQVQN 119
Query: 275 VCKPLKAF---GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331
V AF + +V+L + Q T L P+ +VSTP R++ + A+ + +
Sbjct: 120 VVTTFAAFCGKDVRSVNLTQKVSDAVQRTMLADY-PDLVVSTPARVVTNLGSSALSLENL 178
Query: 332 SLLVVDRLD-SLSKG--DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLS 388
+ LV+D D LS G + ++ + ++I T + + LT V ++ L S L
Sbjct: 179 THLVIDEADLVLSYGYEEDINALAKAIPRGVQTFLMSATLT-DEVDTLKGLFCRSPVTLK 237
Query: 389 LNQSVASQSACIIQSVNVCASDEEKIL 415
L Q A + Q V CA DE+ +L
Sbjct: 238 LEDK-DDQGAGVSQFVVRCAEDEKFLL 263
>sp|A4RN46|PRP5_MAGO7 Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=PRP5 PE=3 SV=1
Length = 1012
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 97/212 (45%), Gaps = 18/212 (8%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP L L ++E A ++ CKP LK G+ V + G I QI L+ E +V+T
Sbjct: 451 GPIGLILTPTRELAVQIFRDCKPFLKTLGLRAVCAYGGPPIKDQIADLKRGA-EIVVATT 509
Query: 315 ERLLKLVSL---KAIDVSGVSLLVVDRLDSL-SKGDTLSLIRQSISGKP--HTVVFNDCL 368
R++ L++ + + + + +V+D D + G +++ + +P TV+F+
Sbjct: 510 GRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANVRPDRQTVLFS--- 566
Query: 369 TYTSVPAVQNLLLGSINRLSLNQSVASQS--ACIIQSVNVCASDEEKILKGIQVLDHAYG 426
++P + + L+ + + + V +S A I + ++ K + +++L Y
Sbjct: 567 --ATMPKIMDALVKKVLKNPVEIEVGGKSVVASEITQIVEIRDEKSKFNRLLELLGELYK 624
Query: 427 DHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458
D + ++ L V + K L+ L KGY
Sbjct: 625 DD---DDVRSLIFVERQEKADELLRELLRKGY 653
>sp|Q8SRB2|DBP2_ENCCU ATP-dependent RNA helicase DBP2 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=DBP2 PE=3 SV=1
Length = 495
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 20/226 (8%)
Query: 211 WKCYSSAKDI--LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268
W S +D+ + +GS T+ I + A D + +G P +L L ++E
Sbjct: 118 WPMALSGRDMVGIAQTGSGKTLSFILPALVHAKDQQPLRRGDG-----PIVLVLAPTREL 172
Query: 269 AAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
+++ V F + + +++ GA+ QI L E +++TP RL+ L
Sbjct: 173 VMQIKKVVDEFCGMFNLRSTAVYGGASSQPQIRALHEGA-EVVIATPGRLIDLHDQGHAP 231
Query: 328 VSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSV-P-AVQNLLLGSIN 385
+S V+ LV+D D + +R+ I P T L +++ P V+ L +N
Sbjct: 232 LSRVTFLVLDEADRMLDMGFEPQLRKII---PKTNANRQTLMWSATWPREVRGLAESYMN 288
Query: 386 R----LSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGD 427
+ N+ + + S I Q V VC S EK K I VLD+ GD
Sbjct: 289 EYIQVVVGNEELKTNSK-IKQIVEVC-SGREKEDKLIGVLDNFKGD 332
>sp|Q6CT46|DBP3_KLULA ATP-dependent RNA helicase DBP3 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DBP3 PE=3 SV=1
Length = 504
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 26/161 (16%)
Query: 228 STIVQIAWIVATAADSIARKEKEG----FSFTGPFLLFLVSSQEKAAKVRS-VCKPLK-- 280
+ I ++W A + + G F+F P + +V+S +K++ V+ V P +
Sbjct: 116 TPIQAVSWPYLLAGKDVIGIAETGSGKTFAFGVPAINNIVTSGDKSSSVKVLVISPTREL 175
Query: 281 -------------AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID 327
A G+ + ++ G D Q LR + +V+TP RLL L+ ++D
Sbjct: 176 ASQIYDNLIVLTDACGLRSCCVYGGVPKDQQREDLRRSQ--VVVATPGRLLDLIEEGSVD 233
Query: 328 VSGVSLLVVDRLDS-LSKG---DTLSLIRQSISGKPHTVVF 364
+S V+ LV+D D L KG D +IRQ+ S T++F
Sbjct: 234 LSHVNYLVLDEADRMLEKGFEEDIKKIIRQTRSTSRQTLMF 274
>sp|Q6CUI6|DBP9_KLULA ATP-dependent RNA helicase DBP9 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DBP9 PE=3 SV=1
Length = 594
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 14/161 (8%)
Query: 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILE--TSGSSSTIVQIAWIVATAAD- 242
+ A+R G + +P + S I +DI+ ++GS T+ + ++ T D
Sbjct: 26 LSQAIRSIGFK--HPTLIQSSAIPL--ALQEKRDIIAKASTGSGKTLAYLIPVIQTILDH 81
Query: 243 SIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF---GIHTVSLHPGAAIDHQI 299
A + EG + + LV ++E A +V V + L F I ++L G + +
Sbjct: 82 KKADQNDEGATLG----VILVPTRELAQQVLEVVEKLIVFCSQEIKCLNLSSGNVSGNLL 137
Query: 300 TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340
L + PE L++TP +L+ L+ + +++ + LV+D +D
Sbjct: 138 KSLLTENPEILIATPAKLVDLLDAQDVNIDRLKFLVIDEVD 178
>sp|Q8K9H6|DEAD_BUCAP Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=deaD PE=3 SV=1
Length = 601
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAID 296
TAA S+ + P +L L ++E A +V + GIH + L+ G +
Sbjct: 57 TAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYE 116
Query: 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
Q+ LR P+ +V TP RLL + +++S + LV+D D +
Sbjct: 117 VQLRALRQG-PQIVVGTPGRLLDHLKRGTLNLSNLYALVLDEADEM 161
>sp|Q4X0C2|DBP9_ASPFU ATP-dependent RNA helicase dbp9 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=dbp9
PE=3 SV=1
Length = 649
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 15/207 (7%)
Query: 217 AKDILE--TSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS 274
KDIL +GS T + I+ T I +K+ S L LV ++E A +V+S
Sbjct: 94 GKDILARAKTGSGKTAAYVLPILQT----ILQKKAADPSLKATTGLILVPTRELAEQVQS 149
Query: 275 VCKPLKAF---GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331
V AF + +V+L + Q T L P+ +VSTP R++ + A+ + +
Sbjct: 150 VIIKFSAFCGKDVRSVNLTQKVSDAVQRTMLADY-PDLIVSTPARVIANLGTSALSLENL 208
Query: 332 SLLVVDRLD-SLSKG--DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLS 388
+ LV+D D LS G + ++ + ++I T + + LT + V ++ L S L
Sbjct: 209 THLVIDEADLVLSYGYDEDINALAKAIPRGVQTFLMSATLT-SEVDTLKGLFCRSPVILK 267
Query: 389 LNQSVASQSACIIQSVNVCASDEEKIL 415
L + + A I Q V CA DE+ +L
Sbjct: 268 L-EDKEDEGAGISQFVVRCAEDEKFLL 293
>sp|P57453|DEAD_BUCAI Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=deaD PE=3 SV=1
Length = 601
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAID 296
TAA S+ + P +L L ++E A +V + GIH + L+ G +
Sbjct: 57 TAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYE 116
Query: 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
Q+ LR P+ +V TP RLL + +++S + LV+D D +
Sbjct: 117 LQLRALRQG-PQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEM 161
>sp|Q74ZC1|DBP9_ASHGO ATP-dependent RNA helicase DBP9 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DBP9
PE=3 SV=1
Length = 595
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 13/150 (8%)
Query: 199 NPLFVNSWGIEFWKCYSSAKDILE--TSGSSSTIVQIAWIVATAADSIARKEKEGFS-FT 255
+P + S I +DI+ ++GS T+ A+++ + K +G T
Sbjct: 38 HPTLIQSSAIPL--ALEQKRDIIAKASTGSGKTL---AYLIPVVQTILEHKSTQGADRTT 92
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSL-HPGAAIDHQITG-LRSCEPEFLVST 313
G + LV ++E A +VR V + L + + L + A +D + G L + PE ++ST
Sbjct: 93 GTLGVVLVPTRELAQQVRVVLEKLVLYCSKDIRLLNISANVDDSVLGPLLAENPEIIIST 152
Query: 314 PERLLKLVS---LKAIDVSGVSLLVVDRLD 340
P +L+K++ L+ I + + LV+D +D
Sbjct: 153 PSQLVKILEGKHLQTISLRDLRFLVIDEVD 182
>sp|Q810A7|DDX42_MOUSE ATP-dependent RNA helicase DDX42 OS=Mus musculus GN=Ddx42 PE=1 SV=3
Length = 929
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP + + ++E ++ + CK KA+ + +V+++ G ++ Q L+ E +V TP
Sbjct: 326 GPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGA-EIVVCTP 384
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RL+ V KA ++ VS LV D D +
Sbjct: 385 GRLIDHVKKKATNLQRVSYLVFDEADRM 412
>sp|Q1E5R1|DHH1_COCIM ATP-dependent RNA helicase DHH1 OS=Coccidioides immitis (strain RS)
GN=DHH1 PE=3 SV=1
Length = 512
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDH 297
TAA I E+ + L LV ++E A + VCK L K GI+ + G +
Sbjct: 98 TAAFVIPTLERTNPKISKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLQD 157
Query: 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG 357
I L S +V TP R+L L S D+S + V+D D L + +I Q +S
Sbjct: 158 DIIRL-SDTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLLSPEFTPVIEQLLSF 216
Query: 358 KP 359
P
Sbjct: 217 HP 218
>sp|Q5F485|DDX42_CHICK ATP-dependent RNA helicase DDX42 OS=Gallus gallus GN=DDX42 PE=2
SV=1
Length = 944
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP + + ++E ++ S CK KA+ + +V+++ G ++ Q L+ E +V TP
Sbjct: 326 GPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGA-EIVVCTP 384
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RL+ V KA ++ V+ LV D D +
Sbjct: 385 GRLIDHVKKKATNLQRVTYLVFDEADRM 412
>sp|Q86XP3|DDX42_HUMAN ATP-dependent RNA helicase DDX42 OS=Homo sapiens GN=DDX42 PE=1 SV=1
Length = 938
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP + + ++E ++ + CK KA+ + +V+++ G ++ Q L+ E +V TP
Sbjct: 326 GPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGA-EIVVCTP 384
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RL+ V KA ++ VS LV D D +
Sbjct: 385 GRLIDHVKKKATNLQRVSYLVFDEADRM 412
>sp|A1DHV3|DBP9_NEOFI ATP-dependent RNA helicase dbp9 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp9
PE=3 SV=1
Length = 619
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 15/207 (7%)
Query: 217 AKDILE--TSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS 274
KDIL +GS T + I+ T I +K+ S L LV ++E A +V+S
Sbjct: 64 GKDILARAKTGSGKTAAYVLPILQT----ILQKKAADPSLKATTGLVLVPTRELAEQVQS 119
Query: 275 VCKPLKAF---GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331
V AF + +V+L + Q T L P+ +VSTP R++ + A+ + +
Sbjct: 120 VIIKFSAFCGKDVRSVNLTQKVSDAVQRTMLADY-PDLIVSTPARVIANLGTSALSLEHL 178
Query: 332 SLLVVDRLD-SLSKG--DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLS 388
+ LV+D D LS G + ++ + ++I T + + LT + V ++ L S L
Sbjct: 179 THLVIDEADLVLSYGYDEDINALAKAIPRGVQTFLMSATLT-SEVDTLKGLFCRSPVILK 237
Query: 389 LNQSVASQSACIIQSVNVCASDEEKIL 415
L + A I Q V CA DE+ +L
Sbjct: 238 LEDK-EDEGAGISQFVVRCAEDEKFLL 263
>sp|Q8XA87|DEAD_ECO57 Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD
PE=3 SV=3
Length = 629
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAID 296
TAA S+ + P +L L ++E A +V G++ V+L+ G D
Sbjct: 57 TAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116
Query: 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
Q+ LR P+ +V TP RLL + +D+S +S LV+D D +
Sbjct: 117 VQLRALRQG-PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEM 161
>sp|P0A9P8|DEAD_SHIFL Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3
SV=2
Length = 629
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAID 296
TAA S+ + P +L L ++E A +V G++ V+L+ G D
Sbjct: 57 TAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116
Query: 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
Q+ LR P+ +V TP RLL + +D+S +S LV+D D +
Sbjct: 117 VQLRALRQG-PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEM 161
>sp|P0A9P6|DEAD_ECOLI Cold-shock DEAD box protein A OS=Escherichia coli (strain K12)
GN=deaD PE=1 SV=2
Length = 629
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAID 296
TAA S+ + P +L L ++E A +V G++ V+L+ G D
Sbjct: 57 TAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116
Query: 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
Q+ LR P+ +V TP RLL + +D+S +S LV+D D +
Sbjct: 117 VQLRALRQG-PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEM 161
>sp|P0A9P7|DEAD_ECOL6 Cold-shock DEAD box protein A OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=deaD PE=3 SV=2
Length = 629
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 239 TAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAID 296
TAA S+ + P +L L ++E A +V G++ V+L+ G D
Sbjct: 57 TAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYD 116
Query: 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
Q+ LR P+ +V TP RLL + +D+S +S LV+D D +
Sbjct: 117 VQLRALRQG-PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEM 161
>sp|A1C7F7|DBP9_ASPCL ATP-dependent RNA helicase dbp9 OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=dbp9 PE=3 SV=1
Length = 621
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 15/207 (7%)
Query: 217 AKDILE--TSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS 274
KDIL +GS T + I+ T I +K+ S L LV ++E A +V+S
Sbjct: 64 GKDILARAKTGSGKTAAYVLPILQT----ILQKKAADPSLKATTGLILVPTRELAEQVQS 119
Query: 275 VCKPLKAF---GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331
V AF + +V+L + Q T L P+ +VSTP R++ + A+ + +
Sbjct: 120 VITKFTAFCGKDVRSVNLTQKVSDAVQRTMLADY-PDLIVSTPARVIANLGSSALALDNL 178
Query: 332 SLLVVDRLD-SLSKG--DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLS 388
+ LV+D D LS G + ++ + ++I T + + LT + V ++ L + L
Sbjct: 179 THLVIDEADLVLSYGYDEDINALAKAIPRGVQTFLMSATLT-SEVDTLKGLFCRNPVVLK 237
Query: 389 LNQSVASQSACIIQSVNVCASDEEKIL 415
L + + A I Q V CA DE+ +L
Sbjct: 238 L-EDKEDEGAGISQFVVRCAEDEKFLL 263
>sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopus laevis GN=ddx42 PE=2
SV=1
Length = 947
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
GP + + ++E ++ S CK KA+ + +V+++ G ++ Q L+ E +V TP
Sbjct: 323 GPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGA-EIVVCTP 381
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RL+ V KA ++ V+ LV D D +
Sbjct: 382 GRLIDHVKKKATNLQRVTYLVFDEADRM 409
>sp|P33906|DEAD_KLEPN Cold-shock DEAD box protein A OS=Klebsiella pneumoniae GN=deaD PE=3
SV=3
Length = 643
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 257 PFLLFLVSSQEKAAKVRSVCKPLKAF--GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP 314
P +L L ++E A +V G++ V+L+ G D Q+ LR P+ +V TP
Sbjct: 75 PQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQG-PQIVVGTP 133
Query: 315 ERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
RLL + +D+S +S LV+D D +
Sbjct: 134 GRLLDHLKRGTLDLSKLSGLVLDEADEM 161
>sp|Q75BS4|DHH1_ASHGO ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DHH1
PE=3 SV=1
Length = 484
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEP-EFLVSTPERL 317
L +V ++E A + V + L K GI + G + I +R EP LV TP R+
Sbjct: 101 LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDI--MRLNEPVHVLVGTPGRV 158
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPH 360
L L S K D+S SL V+D D + D SL+ Q +S P
Sbjct: 159 LDLASRKVADLSECSLFVMDEADKMLSRDFKSLVEQILSFLPQ 201
>sp|A6RY31|DHH1_BOTFB ATP-dependent RNA helicase dhh1 OS=Botryotinia fuckeliana (strain
B05.10) GN=dhh1 PE=3 SV=1
Length = 538
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEP-EFLVSTPERL 317
L LV ++E A + VCK L + GI+ + G + I LR EP +V TP R+
Sbjct: 119 LILVPTRELALQTSQVCKTLGQHLGINVMVTTGGTTLRDDI--LRLQEPVHIIVGTPGRI 176
Query: 318 LKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
L L D+S ++ V+D D L + +I Q + P
Sbjct: 177 LDLAGKNVADLSECNMFVMDEADKLLSPEFTIVIEQLLQFHP 218
>sp|Q0CBE1|DHH1_ASPTN ATP-dependent RNA helicase dhh1 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=dhh1 PE=3 SV=1
Length = 509
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 66/174 (37%), Gaps = 22/174 (12%)
Query: 207 GIEFWKCYSSAK---DILETSGSSSTIVQIAWI-VATAADSIARKEKEGFSFTGPFL--- 259
G+EF Y + I E + +Q I VA I + K G T F+
Sbjct: 46 GLEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPT 105
Query: 260 -------------LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSC 305
L LV ++E A + VCK L K GI+ + G + I L
Sbjct: 106 LERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDA 165
Query: 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
LV TP R+L L S D+S V+D D L + +I Q +S P
Sbjct: 166 V-HILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHP 218
>sp|Q4WWD3|DHH1_ASPFU ATP-dependent RNA helicase dhh1 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=dhh1
PE=3 SV=1
Length = 507
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 66/174 (37%), Gaps = 22/174 (12%)
Query: 207 GIEFWKCYSSAK---DILETSGSSSTIVQIAWI-VATAADSIARKEKEGFSFTGPFL--- 259
G+EF Y + I E + +Q I VA I + K G T F+
Sbjct: 46 GLEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPT 105
Query: 260 -------------LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSC 305
L LV ++E A + VCK L K GI+ + G + I L
Sbjct: 106 LERINPKSTKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDA 165
Query: 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
LV TP R+L L S D+S V+D D L + +I Q +S P
Sbjct: 166 V-HILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHP 218
>sp|A1D8G1|DHH1_NEOFI ATP-dependent RNA helicase dhh1 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dhh1
PE=3 SV=1
Length = 507
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 66/174 (37%), Gaps = 22/174 (12%)
Query: 207 GIEFWKCYSSAK---DILETSGSSSTIVQIAWI-VATAADSIARKEKEGFSFTGPFL--- 259
G+EF Y + I E + +Q I VA I + K G T F+
Sbjct: 46 GLEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPT 105
Query: 260 -------------LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSC 305
L LV ++E A + VCK L K GI+ + G + I L
Sbjct: 106 LERINPKSTKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDA 165
Query: 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
LV TP R+L L S D+S V+D D L + +I Q +S P
Sbjct: 166 V-HILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHP 218
>sp|Q4PDT1|DBP3_USTMA ATP-dependent RNA helicase DBP3 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=DBP3 PE=3 SV=1
Length = 585
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 17/162 (10%)
Query: 259 LLFLVSSQEKAAKVR-SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEP-EFLVSTPER 316
+L + ++E A + ++ K K+ GI + L+ G + Q+ L P +V TP R
Sbjct: 242 VLVIAPTRELAIQTEENMAKLGKSMGIGMICLYGGVSKQEQVRLLNQSPPVRIVVGTPGR 301
Query: 317 LLKLVSLKAIDVSGVSLLVVDRLDS-LSKG---DTLSLI---RQSISGKPHTVVFNDCLT 369
+L + ++D+SGV+ LV+D D L KG D ++I + G+ HT +F +
Sbjct: 302 VLDMARDGSLDLSGVTYLVLDEADRMLDKGFEPDIRAIIGMCKSREEGR-HTSMF----S 356
Query: 370 YTSVPAVQNLLLGSIN---RLSLNQSVASQSACIIQSVNVCA 408
T PAV+ L +N R+++ S + + Q+V V A
Sbjct: 357 ATWPPAVRGLAESFMNGPVRVTVGSDELSANRRVEQTVEVLA 398
>sp|Q2U5A2|DHH1_ASPOR ATP-dependent RNA helicase dhh1 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=dhh1 PE=3 SV=1
Length = 511
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 66/174 (37%), Gaps = 22/174 (12%)
Query: 207 GIEFWKCYSSAK---DILETSGSSSTIVQIAWI-VATAADSIARKEKEGFSFTGPFL--- 259
G+EF Y + I E + +Q I VA I + K G T F+
Sbjct: 46 GLEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPT 105
Query: 260 -------------LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSC 305
L LV ++E A + VCK L K GI+ + G + I L
Sbjct: 106 LERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDA 165
Query: 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
LV TP R+L L S D+S V+D D L + +I Q +S P
Sbjct: 166 V-HILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHP 218
>sp|Q0CY48|DBP9_ASPTN ATP-dependent RNA helicase dbp9 OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=dbp9 PE=3 SV=2
Length = 619
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 15/207 (7%)
Query: 217 AKDILE--TSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS 274
KDIL +GS T + I+ T I +K+ S L LV ++E A +V++
Sbjct: 64 GKDILARAKTGSGKTAAYVLPILQT----ILQKKANDPSLKATTGLILVPTRELAEQVQN 119
Query: 275 VCKPLKAF---GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331
V AF + +V+L + Q T L P+ +VSTP R++ + A+ + +
Sbjct: 120 VITTFAAFCGKDVRSVNLTQKVSDAVQRTMLADY-PDLIVSTPSRVIANLGSSALSLENL 178
Query: 332 SLLVVDRLD-SLSKG--DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLS 388
+ LV+D D LS G + ++ + ++I T + + LT V ++ L S L
Sbjct: 179 THLVIDEADLVLSYGYDEDINALAKAIPRGVQTFLMSATLT-AEVDTLKGLFCRSPVILK 237
Query: 389 LNQSVASQSACIIQSVNVCASDEEKIL 415
L + Q + + Q V CA DE+ +L
Sbjct: 238 L-EDKDDQGSGVSQFVVKCAEDEKFLL 263
>sp|Q6CLR3|DED1_KLULA ATP-dependent RNA helicase DED1 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DED1 PE=3 SV=1
Length = 627
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 263 VSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLR-SCEPEFLVSTPERLLKLV 321
+ + K RS KP+ +G GA+ID+QI +R C LV+TP RL L+
Sbjct: 258 IYDEAKKFTYRSWVKPMVVYG--------GASIDNQIKQMRYGCN--LLVATPGRLTDLL 307
Query: 322 SLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG 357
+ I ++ V LV+D D + IR+ + G
Sbjct: 308 ERRYISLANVKYLVLDEADRMLDMGFEPQIRRIVEG 343
>sp|A1CJ18|DHH1_ASPCL ATP-dependent RNA helicase dhh1 OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=dhh1 PE=3 SV=1
Length = 503
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 66/174 (37%), Gaps = 22/174 (12%)
Query: 207 GIEFWKCYSSAK---DILETSGSSSTIVQIAWI-VATAADSIARKEKEGFSFTGPFL--- 259
G+EF Y + I E + +Q I VA I + K G T F+
Sbjct: 46 GLEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPT 105
Query: 260 -------------LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSC 305
L LV ++E A + VCK L K GI+ + G + I L
Sbjct: 106 LERINPKSTKTQALILVPTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDA 165
Query: 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
LV TP R+L L S D+S V+D D L + +I Q +S P
Sbjct: 166 V-HILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHP 218
>sp|A2QY39|DHH1_ASPNC ATP-dependent RNA helicase dhh1 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=dhh1 PE=3 SV=1
Length = 505
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 66/174 (37%), Gaps = 22/174 (12%)
Query: 207 GIEFWKCYSSAK---DILETSGSSSTIVQIAWI-VATAADSIARKEKEGFSFTGPFL--- 259
G+EF Y + I E + +Q I VA I + K G T F+
Sbjct: 46 GLEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPT 105
Query: 260 -------------LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSC 305
L LV ++E A + VCK L K GI+ + G + I L
Sbjct: 106 LERINPKSTKTQALILVPTRELALQTSHVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDA 165
Query: 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359
LV TP R+L L S D+S V+D D L + +I Q +S P
Sbjct: 166 V-HILVGTPGRVLDLASKGVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHP 218
>sp|P0A4D8|EXP9_STRR6 Probable ATP-dependent RNA helicase exp9 OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=exp9 PE=3 SV=1
Length = 524
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342
G+ S++ G++I+ QI L+S +V TP RLL L+ KA+ + + L++D D +
Sbjct: 97 GVKVRSVYGGSSIEKQIKALKSG-AHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEM 155
Query: 343 SKGDTLSLIRQSISGKP---HTVVFNDCL 368
L I IS P T++F+ +
Sbjct: 156 LNMGFLEDIEAIISRVPENRQTLLFSATM 184
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,227,641
Number of Sequences: 539616
Number of extensions: 6586295
Number of successful extensions: 21546
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 327
Number of HSP's that attempted gapping in prelim test: 21129
Number of HSP's gapped (non-prelim): 650
length of query: 474
length of database: 191,569,459
effective HSP length: 121
effective length of query: 353
effective length of database: 126,275,923
effective search space: 44575400819
effective search space used: 44575400819
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)