Query 011963
Match_columns 474
No_of_seqs 357 out of 1737
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:09:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0339 ATP-dependent RNA heli 100.0 6.2E-58 1.3E-62 458.4 26.9 401 1-473 84-516 (731)
2 KOG0331 ATP-dependent RNA heli 100.0 2.7E-55 5.8E-60 453.1 24.4 277 182-473 98-389 (519)
3 KOG0330 ATP-dependent RNA heli 100.0 6.2E-55 1.4E-59 426.1 21.6 268 182-473 68-348 (476)
4 KOG0338 ATP-dependent RNA heli 100.0 5.2E-53 1.1E-57 423.6 20.0 272 182-473 188-474 (691)
5 COG0513 SrmB Superfamily II DN 100.0 2.7E-51 5.8E-56 436.6 30.5 272 182-473 36-321 (513)
6 KOG0343 RNA Helicase [RNA proc 100.0 2.2E-51 4.8E-56 415.0 21.0 270 182-471 76-361 (758)
7 KOG0342 ATP-dependent RNA heli 100.0 4.9E-51 1.1E-55 409.2 21.4 274 182-473 89-378 (543)
8 KOG0347 RNA helicase [RNA proc 100.0 4.9E-50 1.1E-54 405.3 15.8 275 181-473 187-511 (731)
9 KOG0345 ATP-dependent RNA heli 100.0 2.3E-48 4.9E-53 387.7 25.4 275 182-473 13-305 (567)
10 KOG0333 U5 snRNP-like RNA heli 100.0 6.8E-48 1.5E-52 388.1 23.0 284 173-473 239-565 (673)
11 KOG0336 ATP-dependent RNA heli 100.0 3.2E-48 6.9E-53 380.3 19.3 276 182-473 227-513 (629)
12 PTZ00110 helicase; Provisional 100.0 6.6E-47 1.4E-51 406.2 31.4 276 182-473 137-425 (545)
13 KOG0326 ATP-dependent RNA heli 100.0 2.6E-48 5.7E-53 370.9 14.8 267 182-473 92-370 (459)
14 PRK04837 ATP-dependent RNA hel 100.0 6E-46 1.3E-50 388.7 31.9 275 182-473 15-303 (423)
15 KOG0334 RNA helicase [RNA proc 100.0 3.4E-47 7.4E-52 410.8 21.7 285 172-473 358-661 (997)
16 KOG0335 ATP-dependent RNA heli 100.0 6.8E-47 1.5E-51 384.9 21.5 283 182-473 81-385 (482)
17 KOG0346 RNA helicase [RNA proc 100.0 1.9E-46 4.2E-51 371.0 22.9 278 177-471 20-314 (569)
18 KOG0328 Predicted ATP-dependen 100.0 3.2E-47 6.8E-52 358.3 15.9 269 182-473 34-314 (400)
19 KOG0340 ATP-dependent RNA heli 100.0 2.8E-46 6.1E-51 361.6 19.3 272 182-473 14-302 (442)
20 PRK11776 ATP-dependent RNA hel 100.0 8.4E-45 1.8E-49 384.0 30.6 267 182-473 11-290 (460)
21 PLN00206 DEAD-box ATP-dependen 100.0 8.7E-45 1.9E-49 388.3 31.0 284 174-473 116-416 (518)
22 KOG0348 ATP-dependent RNA heli 100.0 1.2E-45 2.5E-50 372.6 22.2 262 182-456 143-448 (708)
23 PRK10590 ATP-dependent RNA hel 100.0 1.2E-44 2.6E-49 382.1 31.1 274 182-473 8-293 (456)
24 PRK04537 ATP-dependent RNA hel 100.0 1.3E-44 2.7E-49 390.1 31.4 275 182-473 16-305 (572)
25 PRK11634 ATP-dependent RNA hel 100.0 1.6E-44 3.5E-49 391.8 31.8 268 182-473 13-293 (629)
26 PRK11192 ATP-dependent RNA hel 100.0 8E-44 1.7E-48 373.9 31.9 273 182-473 8-293 (434)
27 PRK01297 ATP-dependent RNA hel 100.0 3.1E-43 6.7E-48 373.3 32.4 276 182-473 94-383 (475)
28 KOG0341 DEAD-box protein abstr 100.0 4.4E-46 9.5E-51 363.1 9.2 287 169-473 160-469 (610)
29 KOG0337 ATP-dependent RNA heli 100.0 1.7E-41 3.6E-46 334.5 15.7 258 182-461 28-289 (529)
30 KOG4284 DEAD box protein [Tran 100.0 3.3E-41 7.1E-46 345.9 17.0 279 174-472 23-319 (980)
31 PTZ00424 helicase 45; Provisio 100.0 2.5E-39 5.5E-44 336.1 30.0 269 182-473 35-315 (401)
32 KOG0327 Translation initiation 100.0 3.4E-40 7.4E-45 323.5 15.9 267 182-473 33-311 (397)
33 KOG0332 ATP-dependent RNA heli 100.0 4.8E-40 1E-44 320.1 16.4 272 176-473 90-378 (477)
34 KOG0350 DEAD-box ATP-dependent 100.0 3.7E-39 8E-44 323.7 19.6 252 182-454 144-450 (620)
35 KOG0344 ATP-dependent RNA heli 100.0 3.3E-39 7.2E-44 330.8 17.3 275 182-473 143-436 (593)
36 TIGR03817 DECH_helic helicase/ 100.0 6.1E-37 1.3E-41 338.6 29.7 268 180-473 19-327 (742)
37 KOG0329 ATP-dependent RNA heli 100.0 6.3E-38 1.4E-42 291.7 11.5 243 182-447 49-297 (387)
38 PRK09401 reverse gyrase; Revie 100.0 1.5E-33 3.3E-38 321.8 29.7 255 184-473 67-374 (1176)
39 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.9E-33 4.1E-38 307.0 26.8 253 193-473 12-323 (844)
40 PRK13767 ATP-dependent helicas 100.0 3E-32 6.4E-37 306.7 30.0 273 180-473 16-338 (876)
41 COG1201 Lhr Lhr-like helicases 100.0 1.3E-31 2.8E-36 291.3 26.5 270 182-473 8-302 (814)
42 PRK14701 reverse gyrase; Provi 100.0 1.9E-31 4.2E-36 310.6 29.0 258 183-473 65-376 (1638)
43 PRK00254 ski2-like helicase; P 100.0 2.4E-31 5.1E-36 295.3 27.5 245 182-454 8-259 (720)
44 TIGR01054 rgy reverse gyrase. 100.0 4.4E-31 9.5E-36 302.0 28.8 256 183-473 64-373 (1171)
45 PLN03137 ATP-dependent DNA hel 100.0 5.4E-31 1.2E-35 291.9 28.1 248 193-473 456-728 (1195)
46 TIGR00614 recQ_fam ATP-depende 100.0 8.7E-31 1.9E-35 277.6 27.0 245 193-473 7-274 (470)
47 PRK02362 ski2-like helicase; P 100.0 5.4E-31 1.2E-35 293.1 26.5 244 182-456 8-266 (737)
48 cd00268 DEADc DEAD-box helicas 100.0 6.5E-31 1.4E-35 247.6 22.1 191 182-384 6-200 (203)
49 PRK11057 ATP-dependent DNA hel 100.0 2.8E-29 6E-34 273.3 27.8 243 193-473 21-284 (607)
50 TIGR01389 recQ ATP-dependent D 100.0 1.7E-29 3.7E-34 275.0 25.8 245 193-473 9-272 (591)
51 PRK01172 ski2-like helicase; P 100.0 2.2E-29 4.8E-34 278.0 25.0 241 182-456 8-259 (674)
52 PRK10689 transcription-repair 100.0 2.3E-28 5.1E-33 278.9 29.2 250 186-473 590-859 (1147)
53 TIGR00580 mfd transcription-re 100.0 3.9E-28 8.5E-33 271.8 29.5 252 184-473 438-710 (926)
54 PRK10917 ATP-dependent DNA hel 100.0 1.5E-26 3.2E-31 254.7 28.9 248 189-473 254-529 (681)
55 PRK09751 putative ATP-dependen 100.0 6.2E-27 1.3E-31 269.1 26.7 222 222-456 1-267 (1490)
56 KOG0349 Putative DEAD-box RNA 99.9 1.1E-27 2.3E-32 237.3 14.0 214 254-473 284-556 (725)
57 TIGR00643 recG ATP-dependent D 99.9 5E-26 1.1E-30 248.9 28.6 253 185-473 224-506 (630)
58 PF00270 DEAD: DEAD/DEAH box h 99.9 7.2E-27 1.6E-31 212.9 17.4 159 206-374 3-168 (169)
59 COG1205 Distinct helicase fami 99.9 3.9E-25 8.3E-30 246.2 29.4 258 176-457 49-334 (851)
60 PHA02653 RNA helicase NPH-II; 99.9 1.3E-25 2.9E-30 243.8 24.8 242 206-471 168-441 (675)
61 COG1204 Superfamily II helicas 99.9 2.3E-25 5.1E-30 244.9 23.9 248 182-455 16-275 (766)
62 COG1202 Superfamily II helicas 99.9 9.2E-25 2E-29 223.2 22.4 263 182-471 201-486 (830)
63 TIGR01970 DEAH_box_HrpB ATP-de 99.9 4.9E-24 1.1E-28 236.6 26.7 235 207-473 7-260 (819)
64 PRK11664 ATP-dependent RNA hel 99.9 2.8E-24 6.1E-29 238.9 24.6 233 209-473 12-263 (812)
65 TIGR03158 cas3_cyano CRISPR-as 99.9 1.1E-23 2.5E-28 215.5 26.4 233 206-458 1-297 (357)
66 TIGR01587 cas3_core CRISPR-ass 99.9 2.4E-24 5.2E-29 220.6 20.5 235 219-473 1-276 (358)
67 COG0514 RecQ Superfamily II DN 99.9 3.1E-24 6.8E-29 226.4 20.4 247 193-473 13-278 (590)
68 KOG0952 DNA/RNA helicase MER3/ 99.9 9.5E-24 2.1E-28 227.9 19.8 247 193-458 106-374 (1230)
69 PRK12898 secA preprotein trans 99.9 3.3E-23 7.2E-28 222.4 22.7 245 197-472 103-518 (656)
70 PHA02558 uvsW UvsW helicase; P 99.9 7.9E-23 1.7E-27 218.2 23.7 242 205-473 117-392 (501)
71 PRK12899 secA preprotein trans 99.9 2E-23 4.3E-28 227.9 15.0 144 182-344 69-229 (970)
72 PRK13766 Hef nuclease; Provisi 99.9 2E-21 4.4E-26 218.1 28.8 165 193-370 6-174 (773)
73 TIGR00963 secA preprotein tran 99.9 9.9E-22 2.2E-26 212.3 22.3 129 194-344 54-190 (745)
74 KOG0353 ATP-dependent DNA heli 99.9 5.7E-22 1.2E-26 194.1 16.0 258 169-461 71-345 (695)
75 PRK09200 preprotein translocas 99.9 3.1E-21 6.7E-26 211.3 23.2 129 194-343 76-212 (790)
76 TIGR03714 secA2 accessory Sec 99.9 4E-21 8.6E-26 208.8 23.3 126 207-344 73-209 (762)
77 KOG0351 ATP-dependent DNA heli 99.9 1E-20 2.2E-25 210.2 19.7 249 190-471 257-531 (941)
78 PRK13104 secA preprotein trans 99.9 2.1E-20 4.6E-25 204.6 21.7 122 207-344 87-216 (896)
79 PRK05580 primosome assembly pr 99.8 6.8E-19 1.5E-23 193.7 28.8 152 202-373 144-309 (679)
80 smart00487 DEXDc DEAD-like hel 99.8 3.1E-19 6.8E-24 164.6 19.4 183 193-390 4-191 (201)
81 KOG0352 ATP-dependent DNA heli 99.8 3.1E-20 6.7E-25 184.5 12.7 248 186-461 7-283 (641)
82 PRK12904 preprotein translocas 99.8 5.1E-19 1.1E-23 193.6 22.6 128 194-343 79-214 (830)
83 COG4581 Superfamily II RNA hel 99.8 4.4E-19 9.6E-24 196.4 22.1 236 203-466 120-412 (1041)
84 KOG0948 Nuclear exosomal RNA h 99.8 4.7E-19 1E-23 185.9 18.0 238 197-466 124-416 (1041)
85 COG1111 MPH1 ERCC4-like helica 99.8 3.3E-18 7.1E-23 174.3 21.8 166 194-372 7-176 (542)
86 KOG0947 Cytoplasmic exosomal R 99.8 1.5E-18 3.3E-23 186.1 20.2 232 204-466 299-600 (1248)
87 PRK11131 ATP-dependent RNA hel 99.8 3.8E-18 8.2E-23 194.0 23.7 227 193-459 67-312 (1294)
88 KOG0951 RNA helicase BRR2, DEA 99.8 1.7E-17 3.7E-22 181.9 20.4 246 193-455 305-568 (1674)
89 PRK09694 helicase Cas3; Provis 99.7 1.3E-16 2.8E-21 177.9 24.3 252 205-471 289-613 (878)
90 PRK13107 preprotein translocas 99.7 1.4E-16 3E-21 174.5 20.0 127 197-344 82-216 (908)
91 TIGR00595 priA primosomal prot 99.7 8.7E-16 1.9E-20 163.7 24.5 193 221-443 1-208 (505)
92 COG1110 Reverse gyrase [DNA re 99.7 1.2E-15 2.7E-20 165.7 25.1 253 183-472 68-380 (1187)
93 TIGR00603 rad25 DNA repair hel 99.7 6.1E-16 1.3E-20 168.4 22.2 246 201-473 254-539 (732)
94 TIGR01967 DEAH_box_HrpA ATP-de 99.7 2.3E-15 4.9E-20 172.1 23.5 235 192-459 59-305 (1283)
95 KOG0354 DEAD-box like helicase 99.7 3.4E-16 7.4E-21 167.8 15.0 169 193-374 53-227 (746)
96 COG1061 SSL2 DNA or RNA helica 99.7 2.4E-15 5.3E-20 158.1 20.7 245 200-473 34-330 (442)
97 PRK11448 hsdR type I restricti 99.7 4.8E-15 1E-19 169.7 23.4 156 201-370 412-596 (1123)
98 cd00046 DEXDc DEAD-like helica 99.7 3.5E-15 7.7E-20 129.5 15.9 141 218-368 1-144 (144)
99 TIGR01407 dinG_rel DnaQ family 99.6 3.6E-14 7.9E-19 160.6 26.3 96 182-294 231-334 (850)
100 COG1200 RecG RecG-like helicas 99.6 6.3E-14 1.4E-18 148.6 24.6 251 186-473 252-531 (677)
101 COG4098 comFA Superfamily II D 99.6 3.3E-13 7.1E-18 131.9 21.3 240 197-473 97-353 (441)
102 PF04851 ResIII: Type III rest 99.5 1.3E-13 2.7E-18 126.7 13.4 150 203-369 4-183 (184)
103 TIGR00348 hsdR type I site-spe 99.5 6.3E-12 1.4E-16 138.6 22.3 173 182-370 213-404 (667)
104 COG1203 CRISPR-associated heli 99.4 2.4E-12 5.2E-17 143.4 18.3 263 194-471 187-486 (733)
105 COG1197 Mfd Transcription-repa 99.4 5.6E-11 1.2E-15 132.9 24.5 233 207-473 599-853 (1139)
106 KOG0950 DNA polymerase theta/e 99.4 3E-12 6.6E-17 139.0 13.9 179 182-382 207-399 (1008)
107 KOG0951 RNA helicase BRR2, DEA 99.4 2.8E-12 6.1E-17 141.6 12.8 225 205-455 1146-1381(1674)
108 TIGR03117 cas_csf4 CRISPR-asso 99.4 1.4E-11 3.1E-16 133.2 16.5 74 212-294 11-88 (636)
109 PRK12906 secA preprotein trans 99.3 4.4E-11 9.6E-16 131.2 19.9 126 197-343 80-213 (796)
110 COG4096 HsdR Type I site-speci 99.3 9.3E-11 2E-15 126.5 16.9 237 199-456 162-449 (875)
111 PRK12326 preprotein translocas 99.3 4.8E-10 1E-14 121.1 21.3 127 197-344 78-212 (764)
112 KOG0949 Predicted helicase, DE 99.2 3.5E-11 7.6E-16 130.5 11.2 155 203-371 512-674 (1330)
113 PLN03142 Probable chromatin-re 99.2 1.9E-09 4.2E-14 122.2 23.0 155 202-369 169-330 (1033)
114 PRK07246 bifunctional ATP-depe 99.2 2.2E-10 4.8E-15 128.8 15.3 125 207-344 250-450 (820)
115 PRK04914 ATP-dependent helicas 99.2 1.2E-09 2.7E-14 123.3 20.9 155 201-369 151-316 (956)
116 COG1198 PriA Primosomal protei 99.2 2.7E-09 5.9E-14 116.7 21.9 214 201-444 197-431 (730)
117 PRK13103 secA preprotein trans 99.2 1.6E-09 3.4E-14 119.8 19.9 126 197-343 82-215 (913)
118 CHL00122 secA preprotein trans 99.1 2.4E-09 5.3E-14 117.7 18.3 128 194-343 74-209 (870)
119 smart00488 DEXDc2 DEAD-like he 99.1 2.9E-09 6.3E-14 106.1 15.7 71 204-279 10-84 (289)
120 smart00489 DEXDc3 DEAD-like he 99.1 2.9E-09 6.3E-14 106.1 15.7 71 204-279 10-84 (289)
121 PRK12902 secA preprotein trans 99.1 1.4E-08 3.1E-13 111.7 21.0 121 207-343 90-218 (939)
122 PRK08074 bifunctional ATP-depe 98.9 1.3E-08 2.7E-13 116.5 16.2 78 207-294 262-347 (928)
123 PF06862 DUF1253: Protein of u 98.9 3.6E-08 7.8E-13 102.3 17.8 205 254-461 35-328 (442)
124 COG1643 HrpA HrpA-like helicas 98.9 8.4E-08 1.8E-12 106.7 21.7 217 209-455 57-281 (845)
125 PF00176 SNF2_N: SNF2 family N 98.9 1.5E-08 3.2E-13 100.5 13.2 152 206-371 1-175 (299)
126 PF07652 Flavi_DEAD: Flaviviru 98.9 1.1E-08 2.4E-13 90.0 8.9 135 217-373 4-141 (148)
127 PRK12903 secA preprotein trans 98.8 2.4E-07 5.3E-12 101.9 18.1 128 194-343 76-211 (925)
128 KOG1123 RNA polymerase II tran 98.8 3.9E-08 8.5E-13 100.7 11.2 235 202-472 302-585 (776)
129 PF07517 SecA_DEAD: SecA DEAD- 98.8 1.4E-07 3.1E-12 92.2 14.6 126 197-343 77-210 (266)
130 KOG2340 Uncharacterized conser 98.7 7.9E-08 1.7E-12 99.1 11.9 258 196-461 215-580 (698)
131 KOG0385 Chromatin remodeling c 98.7 5.5E-07 1.2E-11 96.6 18.2 152 203-367 168-326 (971)
132 KOG4150 Predicted ATP-dependen 98.7 2.4E-07 5.2E-12 96.2 14.9 250 182-455 271-547 (1034)
133 PRK11747 dinG ATP-dependent DN 98.6 9.4E-07 2E-11 98.3 16.2 57 207-273 30-95 (697)
134 KOG0920 ATP-dependent RNA heli 98.6 4.7E-06 1E-10 93.0 21.0 226 207-456 178-436 (924)
135 PRK12900 secA preprotein trans 98.5 4.6E-06 9.9E-11 93.2 18.6 121 207-343 143-271 (1025)
136 PF02399 Herpes_ori_bp: Origin 98.5 4.5E-06 9.7E-11 91.5 17.9 215 219-461 51-310 (824)
137 KOG0952 DNA/RNA helicase MER3/ 98.5 2.8E-08 6E-13 109.4 0.6 159 207-379 932-1103(1230)
138 PRK14873 primosome assembly pr 98.5 3.6E-06 7.9E-11 92.6 16.9 130 225-373 168-308 (665)
139 KOG0926 DEAH-box RNA helicase 98.5 4.1E-06 8.9E-11 90.3 16.0 221 211-456 265-504 (1172)
140 KOG0922 DEAH-box RNA helicase 98.5 2.2E-05 4.8E-10 83.7 21.3 215 209-456 58-281 (674)
141 PRK15483 type III restriction- 98.4 1.8E-06 3.9E-11 96.9 13.5 142 218-370 60-240 (986)
142 COG1199 DinG Rad3-related DNA 98.4 2.3E-06 5E-11 94.9 11.5 71 194-279 12-86 (654)
143 TIGR02562 cas3_yersinia CRISPR 98.3 3.6E-06 7.7E-11 94.6 12.6 177 194-379 400-646 (1110)
144 PF14617 CMS1: U3-containing 9 98.3 1.3E-06 2.9E-11 84.5 7.5 86 255-340 125-211 (252)
145 TIGR00604 rad3 DNA repair heli 98.3 8.3E-06 1.8E-10 91.2 13.1 65 207-279 15-83 (705)
146 KOG0384 Chromodomain-helicase 98.2 4.4E-05 9.5E-10 86.0 17.6 161 201-376 369-544 (1373)
147 COG0556 UvrB Helicase subunit 98.1 9E-05 2E-09 77.3 16.4 59 207-279 17-80 (663)
148 PF13086 AAA_11: AAA domain; P 98.1 4.4E-05 9.6E-10 72.4 13.1 73 203-278 2-75 (236)
149 KOG0387 Transcription-coupled 98.1 0.00044 9.5E-09 75.2 21.6 151 205-368 208-375 (923)
150 TIGR00631 uvrb excinuclease AB 98.1 0.00028 6.1E-09 77.9 19.8 59 410-473 424-490 (655)
151 KOG0925 mRNA splicing factor A 98.1 0.00027 5.9E-09 72.9 18.0 236 183-455 33-275 (699)
152 KOG0390 DNA repair protein, SN 98.0 0.0006 1.3E-08 75.2 21.0 234 204-455 240-515 (776)
153 COG4889 Predicted helicase [Ge 98.0 2.3E-05 5.1E-10 85.4 9.2 127 204-344 163-318 (1518)
154 PF13604 AAA_30: AAA domain; P 97.9 7.5E-05 1.6E-09 70.2 10.1 125 204-367 3-130 (196)
155 TIGR01447 recD exodeoxyribonuc 97.8 0.00033 7.1E-09 76.4 14.1 140 205-366 148-294 (586)
156 COG0610 Type I site-specific r 97.8 0.00023 4.9E-09 81.9 13.2 141 218-371 274-416 (962)
157 KOG0924 mRNA splicing factor A 97.8 0.00092 2E-08 71.6 16.3 215 207-454 361-584 (1042)
158 KOG0923 mRNA splicing factor A 97.8 0.0012 2.6E-08 70.6 16.9 217 206-454 269-494 (902)
159 PRK10875 recD exonuclease V su 97.7 0.0003 6.4E-09 77.0 12.9 139 205-366 155-300 (615)
160 PF02562 PhoH: PhoH-like prote 97.7 0.00024 5.2E-09 67.0 10.0 137 204-366 6-154 (205)
161 TIGR00376 DNA helicase, putati 97.6 0.014 3E-07 64.7 23.3 65 203-278 158-223 (637)
162 PF12340 DUF3638: Protein of u 97.6 0.0009 2E-08 63.9 12.0 105 204-320 25-144 (229)
163 KOG1000 Chromatin remodeling p 97.5 0.012 2.6E-07 61.4 19.4 162 175-368 184-348 (689)
164 PRK10536 hypothetical protein; 97.4 0.005 1.1E-07 60.0 14.6 135 205-364 62-209 (262)
165 KOG4439 RNA polymerase II tran 97.4 0.00057 1.2E-08 73.4 8.7 161 203-368 326-501 (901)
166 PF09848 DUF2075: Uncharacteri 97.3 0.00092 2E-08 68.6 9.6 104 220-354 4-117 (352)
167 PRK12901 secA preprotein trans 97.3 0.00041 8.9E-09 78.1 7.4 121 207-343 174-303 (1112)
168 PRK13889 conjugal transfer rel 97.3 0.0065 1.4E-07 69.8 16.9 118 207-367 351-470 (988)
169 KOG0389 SNF2 family DNA-depend 97.3 0.0014 3E-08 71.4 10.7 166 200-378 397-573 (941)
170 COG3587 Restriction endonuclea 97.3 0.0014 3.1E-08 72.0 10.2 143 219-373 76-247 (985)
171 KOG1002 Nucleotide excision re 97.1 0.0027 5.8E-08 65.9 10.0 148 204-368 186-354 (791)
172 TIGR01448 recD_rel helicase, p 97.1 0.0059 1.3E-07 68.4 13.1 127 204-366 325-451 (720)
173 KOG0391 SNF2 family DNA-depend 97.1 0.0023 5E-08 72.2 9.5 153 202-368 615-775 (1958)
174 PF13872 AAA_34: P-loop contai 97.1 0.0043 9.4E-08 61.5 10.5 152 207-376 42-228 (303)
175 PF13245 AAA_19: Part of AAA d 97.0 0.0033 7.1E-08 49.7 7.2 60 210-276 2-62 (76)
176 KOG0386 Chromatin remodeling c 97.0 0.0015 3.3E-08 72.7 6.8 149 205-368 397-554 (1157)
177 KOG0392 SNF2 family DNA-depend 96.8 0.013 2.9E-07 66.7 12.9 173 194-377 965-1148(1549)
178 PRK04296 thymidine kinase; Pro 96.6 0.011 2.5E-07 55.1 9.2 110 218-368 3-115 (190)
179 PF03354 Terminase_1: Phage Te 96.6 0.0075 1.6E-07 64.5 9.0 145 205-365 1-160 (477)
180 PHA02533 17 large terminase pr 96.6 0.02 4.4E-07 61.9 11.8 149 199-368 56-210 (534)
181 PRK14974 cell division protein 96.5 0.049 1.1E-06 55.5 13.8 129 218-380 141-276 (336)
182 PRK05298 excinuclease ABC subu 96.5 0.0096 2.1E-07 66.1 8.9 58 411-473 429-494 (652)
183 KOG1132 Helicase of the DEAD s 96.5 0.018 3.9E-07 63.8 10.5 73 207-280 26-134 (945)
184 TIGR01073 pcrA ATP-dependent D 96.4 0.21 4.5E-06 56.4 19.5 76 206-290 8-86 (726)
185 PF00580 UvrD-helicase: UvrD/R 96.4 0.006 1.3E-07 60.6 6.5 64 207-279 5-68 (315)
186 PF13401 AAA_22: AAA domain; P 96.4 0.024 5.2E-07 48.8 9.3 19 216-235 3-21 (131)
187 TIGR02768 TraA_Ti Ti-type conj 96.4 0.051 1.1E-06 61.3 14.1 120 203-365 353-474 (744)
188 cd00009 AAA The AAA+ (ATPases 96.3 0.049 1.1E-06 46.8 10.9 27 329-355 83-111 (151)
189 PF05970 PIF1: PIF1-like helic 96.3 0.014 3.1E-07 60.2 8.4 59 203-272 2-66 (364)
190 PRK14722 flhF flagellar biosyn 96.2 0.14 3.1E-06 52.8 15.3 21 216-237 136-156 (374)
191 COG1875 NYN ribonuclease and A 96.2 0.035 7.5E-07 56.3 10.3 134 204-364 230-384 (436)
192 KOG1803 DNA helicase [Replicat 96.2 0.023 5E-07 60.7 9.5 63 203-276 186-249 (649)
193 PRK12723 flagellar biosynthesi 96.2 0.27 5.9E-06 51.1 17.2 51 329-379 253-309 (388)
194 KOG0388 SNF2 family DNA-depend 96.2 0.022 4.8E-07 61.7 9.1 147 206-371 571-736 (1185)
195 COG0653 SecA Preprotein transl 96.2 0.018 4E-07 64.1 8.8 122 208-343 84-213 (822)
196 KOG0953 Mitochondrial RNA heli 96.1 0.015 3.2E-07 61.5 7.0 130 218-381 192-325 (700)
197 PRK13826 Dtr system oriT relax 95.9 0.12 2.5E-06 60.2 14.3 120 205-367 384-505 (1102)
198 PRK08181 transposase; Validate 95.9 0.1 2.3E-06 51.4 12.0 48 214-273 103-150 (269)
199 PRK11889 flhF flagellar biosyn 95.9 0.36 7.8E-06 50.1 16.0 69 312-381 303-376 (436)
200 PRK06526 transposase; Provisio 95.9 0.048 1E-06 53.4 9.4 41 329-369 158-202 (254)
201 TIGR02760 TraI_TIGR conjugativ 95.8 0.88 1.9E-05 56.7 21.6 208 205-455 432-648 (1960)
202 KOG1015 Transcription regulato 95.7 0.69 1.5E-05 52.2 18.0 143 219-370 698-862 (1567)
203 cd01122 GP4d_helicase GP4d_hel 95.5 0.069 1.5E-06 52.4 9.1 41 213-263 26-66 (271)
204 PF05127 Helicase_RecD: Helica 95.5 0.0052 1.1E-07 56.6 0.9 134 221-380 1-138 (177)
205 PRK07952 DNA replication prote 95.4 0.34 7.3E-06 47.1 13.2 43 328-370 160-207 (244)
206 PRK13894 conjugal transfer ATP 95.3 0.14 2.9E-06 51.9 10.4 66 188-269 125-191 (319)
207 PRK06731 flhF flagellar biosyn 95.2 1.2 2.5E-05 44.1 16.6 129 216-381 74-210 (270)
208 COG0553 HepA Superfamily II DN 95.2 0.11 2.4E-06 59.3 10.8 156 203-368 339-510 (866)
209 PRK08903 DnaA regulatory inact 95.2 0.12 2.7E-06 49.2 9.4 41 330-370 90-133 (227)
210 PRK05642 DNA replication initi 95.1 0.077 1.7E-06 51.2 7.9 41 330-370 97-141 (234)
211 smart00382 AAA ATPases associa 95.1 0.078 1.7E-06 44.9 7.2 18 217-235 2-19 (148)
212 PF00308 Bac_DnaA: Bacterial d 95.1 0.53 1.2E-05 44.9 13.5 44 329-372 96-144 (219)
213 TIGR03420 DnaA_homol_Hda DnaA 95.0 0.14 2.9E-06 48.7 9.2 40 331-370 91-134 (226)
214 PRK05707 DNA polymerase III su 95.0 0.16 3.4E-06 51.7 10.0 39 205-245 6-48 (328)
215 PRK05703 flhF flagellar biosyn 95.0 1.7 3.8E-05 45.8 18.0 64 312-379 285-354 (424)
216 PRK14087 dnaA chromosomal repl 94.9 0.21 4.5E-06 53.1 11.1 43 329-371 205-252 (450)
217 PTZ00112 origin recognition co 94.9 0.42 9.1E-06 54.1 13.5 38 329-366 868-908 (1164)
218 PRK13833 conjugal transfer pro 94.9 0.21 4.6E-06 50.6 10.4 54 207-269 133-187 (323)
219 PRK08769 DNA polymerase III su 94.8 0.25 5.5E-06 50.0 10.8 38 329-366 112-151 (319)
220 PRK06893 DNA replication initi 94.8 0.11 2.3E-06 50.0 7.9 43 329-371 90-137 (229)
221 PRK11331 5-methylcytosine-spec 94.8 0.11 2.4E-06 54.7 8.4 28 207-235 184-211 (459)
222 PRK12377 putative replication 94.7 0.55 1.2E-05 45.8 12.6 98 218-366 102-204 (248)
223 PRK08084 DNA replication initi 94.7 0.12 2.6E-06 49.9 8.0 40 331-370 98-142 (235)
224 TIGR02782 TrbB_P P-type conjug 94.7 0.4 8.6E-06 48.1 11.9 54 207-269 121-175 (299)
225 PRK00149 dnaA chromosomal repl 94.7 0.27 5.8E-06 52.2 11.2 40 330-370 211-255 (450)
226 cd00079 HELICc Helicase superf 94.6 0.17 3.7E-06 42.9 8.0 67 400-473 2-76 (131)
227 cd01120 RecA-like_NTPases RecA 94.6 0.18 3.8E-06 44.5 8.3 42 329-370 84-138 (165)
228 TIGR00580 mfd transcription-re 94.6 0.74 1.6E-05 53.2 15.1 92 256-355 660-754 (926)
229 TIGR01547 phage_term_2 phage t 94.5 0.17 3.6E-06 52.8 9.1 144 220-380 4-152 (396)
230 PRK08727 hypothetical protein; 94.5 0.13 2.8E-06 49.7 7.5 40 330-370 93-137 (233)
231 COG3421 Uncharacterized protei 94.5 0.77 1.7E-05 49.5 13.6 145 306-454 81-253 (812)
232 PRK12726 flagellar biosynthesi 94.4 2.1 4.6E-05 44.3 16.3 20 216-236 205-224 (407)
233 PF13177 DNA_pol3_delta2: DNA 94.4 0.23 5E-06 45.0 8.6 39 329-367 101-141 (162)
234 PRK14712 conjugal transfer nic 94.4 0.37 8.1E-06 58.1 12.4 126 204-367 837-967 (1623)
235 KOG3089 Predicted DEAD-box-con 94.3 0.012 2.6E-07 55.1 -0.0 45 295-339 185-229 (271)
236 COG1444 Predicted P-loop ATPas 94.3 0.29 6.3E-06 54.5 10.6 150 190-371 207-359 (758)
237 cd00984 DnaB_C DnaB helicase C 94.3 0.18 3.8E-06 48.5 8.1 48 216-273 12-62 (242)
238 KOG1805 DNA replication helica 94.3 0.26 5.7E-06 55.5 10.1 119 207-344 674-810 (1100)
239 PF05621 TniB: Bacterial TniB 94.3 0.13 2.8E-06 51.2 7.1 112 218-360 62-180 (302)
240 PRK10689 transcription-repair 94.1 0.24 5.1E-06 58.5 10.1 92 256-355 809-903 (1147)
241 PRK12422 chromosomal replicati 94.1 0.41 8.9E-06 50.8 11.0 45 329-373 201-250 (445)
242 PRK06921 hypothetical protein; 94.1 0.42 9.1E-06 47.1 10.4 47 216-273 116-162 (266)
243 PRK04537 ATP-dependent RNA hel 94.1 0.4 8.7E-06 52.5 11.2 76 255-339 256-334 (572)
244 TIGR00631 uvrb excinuclease AB 94.0 1 2.2E-05 50.2 14.3 115 255-378 441-563 (655)
245 PF01695 IstB_IS21: IstB-like 94.0 0.17 3.6E-06 46.8 6.9 47 215-273 45-91 (178)
246 cd01124 KaiC KaiC is a circadi 93.9 0.21 4.5E-06 45.7 7.5 48 220-279 2-49 (187)
247 TIGR00362 DnaA chromosomal rep 93.9 0.32 6.8E-06 50.9 9.7 39 331-370 200-243 (405)
248 KOG0989 Replication factor C, 93.9 0.21 4.5E-06 49.7 7.6 43 326-368 125-169 (346)
249 PRK00771 signal recognition pa 93.9 1.5 3.2E-05 46.4 14.6 17 218-235 96-112 (437)
250 KOG0742 AAA+-type ATPase [Post 93.8 0.27 5.8E-06 50.7 8.4 17 218-235 385-401 (630)
251 TIGR02640 gas_vesic_GvpN gas v 93.8 0.86 1.9E-05 44.7 12.0 27 208-235 12-38 (262)
252 PRK11192 ATP-dependent RNA hel 93.8 0.43 9.3E-06 50.3 10.5 72 256-336 245-319 (434)
253 PF00448 SRP54: SRP54-type pro 93.7 1.1 2.4E-05 42.0 12.0 50 331-380 84-137 (196)
254 PRK12402 replication factor C 93.5 0.73 1.6E-05 46.4 11.3 39 329-368 124-164 (337)
255 COG0513 SrmB Superfamily II DN 93.4 0.57 1.2E-05 50.6 10.9 70 257-335 274-346 (513)
256 PRK00411 cdc6 cell division co 93.4 0.85 1.8E-05 47.2 11.8 16 218-234 56-71 (394)
257 PRK14088 dnaA chromosomal repl 93.4 0.61 1.3E-05 49.4 10.8 45 330-374 194-243 (440)
258 PRK11054 helD DNA helicase IV; 93.4 0.31 6.7E-06 54.4 8.9 77 205-290 199-276 (684)
259 PRK13709 conjugal transfer nic 93.3 0.86 1.9E-05 55.7 13.0 128 204-367 969-1099(1747)
260 PLN03025 replication factor C 93.3 0.84 1.8E-05 46.1 11.2 40 330-370 99-140 (319)
261 PRK05298 excinuclease ABC subu 93.2 0.75 1.6E-05 51.3 11.7 64 197-279 12-80 (652)
262 PRK08116 hypothetical protein; 93.2 0.71 1.5E-05 45.5 10.3 43 329-371 177-224 (268)
263 PRK10919 ATP-dependent DNA hel 93.2 0.18 4E-06 56.3 6.8 78 205-291 5-86 (672)
264 PRK04837 ATP-dependent RNA hel 93.2 0.64 1.4E-05 48.8 10.6 73 256-337 255-330 (423)
265 KOG1802 RNA helicase nonsense 93.2 0.33 7.1E-06 52.7 8.2 83 196-291 404-486 (935)
266 PF03668 ATP_bind_2: P-loop AT 93.2 0.35 7.7E-06 47.8 7.9 235 220-464 4-279 (284)
267 TIGR02881 spore_V_K stage V sp 93.1 0.7 1.5E-05 45.2 10.1 17 218-235 43-59 (261)
268 PRK06835 DNA replication prote 93.1 0.44 9.5E-06 48.5 8.8 47 216-274 182-228 (329)
269 TIGR03015 pepcterm_ATPase puta 92.9 2.1 4.5E-05 41.6 13.2 28 207-235 28-60 (269)
270 PF05729 NACHT: NACHT domain 92.9 0.73 1.6E-05 40.8 9.2 34 334-367 85-129 (166)
271 PRK06871 DNA polymerase III su 92.8 0.78 1.7E-05 46.6 10.2 38 328-365 105-144 (325)
272 PRK08699 DNA polymerase III su 92.8 0.98 2.1E-05 45.9 10.9 39 205-245 4-47 (325)
273 KOG0738 AAA+-type ATPase [Post 92.7 1.4 2.9E-05 45.4 11.4 21 212-233 235-260 (491)
274 TIGR02928 orc1/cdc6 family rep 92.7 1.7 3.7E-05 44.4 12.8 25 218-244 41-65 (365)
275 PRK07003 DNA polymerase III su 92.7 0.79 1.7E-05 51.3 10.6 41 329-370 118-160 (830)
276 PRK14721 flhF flagellar biosyn 92.7 3.3 7.1E-05 43.6 14.8 21 216-237 190-210 (420)
277 TIGR00643 recG ATP-dependent D 92.7 5.7 0.00012 44.1 17.6 93 255-355 447-550 (630)
278 TIGR00064 ftsY signal recognit 92.7 2.5 5.4E-05 41.8 13.3 18 218-236 73-90 (272)
279 COG1484 DnaC DNA replication p 92.7 1.2 2.5E-05 43.7 10.9 50 216-277 104-153 (254)
280 PHA03333 putative ATPase subun 92.7 3.5 7.7E-05 45.6 15.3 138 215-370 185-334 (752)
281 TIGR00596 rad1 DNA repair prot 92.6 0.49 1.1E-05 53.7 9.2 65 307-371 8-75 (814)
282 PRK06964 DNA polymerase III su 92.6 0.99 2.1E-05 46.2 10.6 40 205-246 4-48 (342)
283 TIGR02785 addA_Gpos recombinat 92.6 0.42 9.1E-06 57.1 9.0 116 207-341 6-126 (1232)
284 KOG0344 ATP-dependent RNA heli 92.5 0.85 1.8E-05 48.8 10.1 94 230-339 369-465 (593)
285 PF03796 DnaB_C: DnaB-like hel 92.5 0.17 3.6E-06 49.5 4.7 133 219-367 21-179 (259)
286 PRK14086 dnaA chromosomal repl 92.4 0.91 2E-05 49.8 10.6 43 329-371 376-423 (617)
287 PTZ00110 helicase; Provisional 92.4 1 2.3E-05 49.0 11.2 72 256-336 377-451 (545)
288 PRK11773 uvrD DNA-dependent he 92.4 0.28 6.1E-06 55.3 7.0 76 207-291 14-92 (721)
289 TIGR03600 phage_DnaB phage rep 92.4 1.2 2.6E-05 46.8 11.4 141 209-366 182-352 (421)
290 PRK13851 type IV secretion sys 92.4 0.49 1.1E-05 48.4 8.1 50 208-269 153-202 (344)
291 TIGR01075 uvrD DNA helicase II 92.3 0.23 5.1E-06 55.9 6.2 75 207-290 9-86 (715)
292 PRK07471 DNA polymerase III su 92.3 1.5 3.2E-05 45.4 11.5 139 212-367 33-180 (365)
293 TIGR02760 TraI_TIGR conjugativ 92.3 1 2.2E-05 56.2 12.0 122 205-364 1022-1146(1960)
294 TIGR00678 holB DNA polymerase 92.2 1.2 2.6E-05 41.1 9.8 39 328-367 94-134 (188)
295 COG1197 Mfd Transcription-repa 92.1 3.7 7.9E-05 47.8 15.2 144 207-359 732-901 (1139)
296 COG1435 Tdk Thymidine kinase [ 92.1 2.3 5.1E-05 39.7 11.3 103 218-355 5-109 (201)
297 COG4626 Phage terminase-like p 92.1 1.6 3.6E-05 46.8 11.7 150 197-366 56-223 (546)
298 KOG0331 ATP-dependent RNA heli 92.1 0.77 1.7E-05 49.1 9.2 73 255-336 340-415 (519)
299 PRK08533 flagellar accessory p 92.0 1.9 4.2E-05 41.4 11.4 52 216-279 23-74 (230)
300 TIGR01074 rep ATP-dependent DN 92.0 0.38 8.3E-06 53.6 7.3 77 205-290 4-84 (664)
301 PRK10590 ATP-dependent RNA hel 91.9 1.2 2.5E-05 47.5 10.7 72 256-336 245-319 (456)
302 PRK11776 ATP-dependent RNA hel 91.9 1.2 2.6E-05 47.4 10.7 75 256-339 242-319 (460)
303 PRK06904 replicative DNA helic 91.9 0.89 1.9E-05 48.6 9.7 141 209-365 209-381 (472)
304 TIGR03881 KaiC_arch_4 KaiC dom 91.9 2.1 4.6E-05 40.7 11.5 51 217-279 20-70 (229)
305 TIGR01425 SRP54_euk signal rec 91.9 4.9 0.00011 42.3 14.9 86 219-318 102-195 (429)
306 PHA03368 DNA packaging termina 91.9 1.8 3.8E-05 47.7 11.8 137 215-371 252-393 (738)
307 PRK07764 DNA polymerase III su 91.8 1.6 3.4E-05 49.9 11.9 40 329-369 119-160 (824)
308 cd01126 TraG_VirD4 The TraG/Tr 91.8 0.095 2.1E-06 54.4 2.1 48 219-279 1-48 (384)
309 PRK12724 flagellar biosynthesi 91.7 13 0.00028 39.1 17.7 50 330-379 299-356 (432)
310 PRK09112 DNA polymerase III su 91.7 0.7 1.5E-05 47.4 8.4 41 329-370 140-182 (351)
311 cd01129 PulE-GspE PulE/GspE Th 91.7 1.2 2.5E-05 43.9 9.6 45 189-243 58-104 (264)
312 KOG0991 Replication factor C, 91.7 0.65 1.4E-05 44.6 7.3 42 329-370 112-155 (333)
313 CHL00181 cbbX CbbX; Provisiona 91.7 1.6 3.4E-05 43.6 10.6 18 217-235 59-76 (287)
314 PRK10917 ATP-dependent DNA hel 91.7 12 0.00026 42.0 18.7 92 255-355 470-573 (681)
315 PRK14952 DNA polymerase III su 91.6 1.3 2.7E-05 48.7 10.6 41 329-370 117-159 (584)
316 cd03115 SRP The signal recogni 91.6 4.1 8.8E-05 36.9 12.6 51 330-380 82-136 (173)
317 PRK00440 rfc replication facto 91.6 2.8 6.1E-05 41.8 12.5 36 330-365 102-139 (319)
318 PRK07994 DNA polymerase III su 91.6 2.1 4.6E-05 47.4 12.3 42 329-371 118-161 (647)
319 PRK12727 flagellar biosynthesi 91.6 5.5 0.00012 43.1 14.9 62 313-379 415-481 (559)
320 PRK07993 DNA polymerase III su 91.5 1 2.3E-05 45.8 9.3 38 328-365 106-145 (334)
321 PF02534 T4SS-DNA_transf: Type 91.5 0.18 3.9E-06 53.7 3.9 49 218-279 45-93 (469)
322 cd00561 CobA_CobO_BtuR ATP:cor 91.4 2 4.2E-05 39.0 9.9 50 328-377 93-147 (159)
323 COG0470 HolB ATPase involved i 91.3 0.99 2.1E-05 45.1 8.9 43 328-371 107-151 (325)
324 PRK12323 DNA polymerase III su 91.3 1.9 4.1E-05 47.7 11.3 37 329-365 123-161 (700)
325 TIGR02880 cbbX_cfxQ probable R 91.2 1.5 3.3E-05 43.5 10.0 18 217-235 58-75 (284)
326 KOG0333 U5 snRNP-like RNA heli 91.1 0.8 1.7E-05 48.6 7.9 72 255-335 516-590 (673)
327 PRK11823 DNA repair protein Ra 91.1 2.4 5.3E-05 45.0 11.9 50 218-279 81-130 (446)
328 PF13173 AAA_14: AAA domain 91.1 2 4.4E-05 36.9 9.5 37 330-367 61-98 (128)
329 PRK01297 ATP-dependent RNA hel 91.1 1.6 3.5E-05 46.6 10.7 73 256-337 335-410 (475)
330 TIGR00614 recQ_fam ATP-depende 91.0 1.1 2.3E-05 47.9 9.3 76 255-339 225-303 (470)
331 PF00437 T2SE: Type II/IV secr 91.0 0.81 1.7E-05 44.9 7.8 44 215-269 125-168 (270)
332 PRK07004 replicative DNA helic 90.9 0.88 1.9E-05 48.5 8.4 142 209-366 201-372 (460)
333 PRK14958 DNA polymerase III su 90.8 2 4.4E-05 46.3 11.2 37 329-365 118-156 (509)
334 PRK14949 DNA polymerase III su 90.7 1.4 2.9E-05 50.4 9.9 43 329-372 118-162 (944)
335 KOG0354 DEAD-box like helicase 90.7 1.2 2.7E-05 49.3 9.4 78 255-338 412-500 (746)
336 PTZ00424 helicase 45; Provisio 90.6 2.2 4.7E-05 44.2 11.0 72 256-336 267-341 (401)
337 PRK13897 type IV secretion sys 90.6 0.23 5E-06 54.5 3.7 56 218-289 159-214 (606)
338 PRK06090 DNA polymerase III su 90.4 2.1 4.6E-05 43.3 10.3 39 328-366 106-146 (319)
339 TIGR03878 thermo_KaiC_2 KaiC d 90.4 4.9 0.00011 39.3 12.5 52 217-279 36-90 (259)
340 PRK08006 replicative DNA helic 90.3 1.7 3.6E-05 46.5 9.9 142 209-365 212-383 (471)
341 PRK11634 ATP-dependent RNA hel 90.2 2 4.4E-05 47.6 10.8 72 256-336 245-319 (629)
342 COG1419 FlhF Flagellar GTP-bin 90.2 7.4 0.00016 40.5 13.9 89 217-316 203-292 (407)
343 PF07728 AAA_5: AAA domain (dy 90.1 0.092 2E-06 45.9 0.1 14 219-233 1-14 (139)
344 PRK05563 DNA polymerase III su 90.1 3.7 8E-05 44.9 12.5 42 328-370 117-160 (559)
345 PRK10867 signal recognition pa 90.1 5.4 0.00012 42.2 13.2 155 219-392 102-278 (433)
346 PRK14723 flhF flagellar biosyn 90.0 11 0.00023 42.7 16.0 20 217-237 185-204 (767)
347 PRK08506 replicative DNA helic 89.9 1.5 3.2E-05 47.0 9.1 142 207-366 178-350 (472)
348 PRK14961 DNA polymerase III su 89.9 2 4.3E-05 44.3 9.8 36 329-364 118-155 (363)
349 COG1474 CDC6 Cdc6-related prot 89.8 4.1 8.9E-05 42.1 12.0 37 331-367 124-163 (366)
350 PHA02544 44 clamp loader, smal 89.7 2.3 4.9E-05 42.6 9.9 36 330-365 100-138 (316)
351 TIGR03877 thermo_KaiC_1 KaiC d 89.6 1.3 2.9E-05 42.6 7.8 59 209-279 8-71 (237)
352 TIGR02533 type_II_gspE general 89.5 1.3 2.9E-05 47.5 8.3 45 189-243 220-266 (486)
353 KOG1001 Helicase-like transcri 89.5 1.6 3.5E-05 48.6 9.2 140 219-371 154-295 (674)
354 PRK06995 flhF flagellar biosyn 89.4 2.5 5.4E-05 45.2 10.2 91 217-318 256-347 (484)
355 PF06745 KaiC: KaiC; InterPro 89.4 2.2 4.8E-05 40.5 9.1 124 217-368 19-160 (226)
356 PRK08451 DNA polymerase III su 89.3 2.7 5.9E-05 45.6 10.5 38 328-365 115-154 (535)
357 PRK13850 type IV secretion sys 89.2 0.34 7.4E-06 53.9 3.7 55 218-288 140-194 (670)
358 PRK09435 membrane ATPase/prote 89.2 8.5 0.00018 39.2 13.5 111 268-381 133-257 (332)
359 PRK11057 ATP-dependent DNA hel 89.2 1.7 3.7E-05 48.0 9.2 72 256-336 236-310 (607)
360 PRK08840 replicative DNA helic 89.2 2.3 5E-05 45.4 9.8 36 330-365 329-376 (464)
361 PRK10436 hypothetical protein; 89.2 1.6 3.4E-05 46.6 8.5 45 189-243 196-242 (462)
362 PLN00206 DEAD-box ATP-dependen 89.1 1.7 3.6E-05 47.1 8.9 73 256-336 367-442 (518)
363 TIGR00595 priA primosomal prot 89.0 7.3 0.00016 42.1 13.6 68 270-344 272-344 (505)
364 PRK05748 replicative DNA helic 88.9 0.8 1.7E-05 48.6 6.2 144 207-367 189-364 (448)
365 PF00004 AAA: ATPase family as 88.9 3.6 7.8E-05 34.8 9.3 14 331-344 59-72 (132)
366 PRK14950 DNA polymerase III su 88.9 4 8.6E-05 45.0 11.7 39 328-367 118-158 (585)
367 COG1609 PurR Transcriptional r 88.8 29 0.00063 35.2 21.1 39 419-460 225-263 (333)
368 PRK09111 DNA polymerase III su 88.8 3.2 6.8E-05 45.8 10.8 38 328-365 130-169 (598)
369 TIGR01970 DEAH_box_HrpB ATP-de 88.7 3.4 7.4E-05 47.2 11.3 74 257-336 210-286 (819)
370 TIGR01054 rgy reverse gyrase. 88.6 1.4 3E-05 52.3 8.4 72 256-336 326-404 (1171)
371 TIGR02538 type_IV_pilB type IV 88.4 2.1 4.5E-05 46.9 9.1 45 189-243 294-340 (564)
372 KOG0739 AAA+-type ATPase [Post 88.4 6.3 0.00014 39.3 11.3 124 212-390 156-299 (439)
373 PRK11664 ATP-dependent RNA hel 88.4 3.5 7.6E-05 47.2 11.1 75 256-336 212-289 (812)
374 PF03237 Terminase_6: Terminas 88.4 13 0.00028 37.3 14.4 139 221-381 1-152 (384)
375 PRK14964 DNA polymerase III su 88.3 5.3 0.00012 42.9 11.8 41 328-369 114-156 (491)
376 cd00079 HELICc Helicase superf 88.2 3.7 7.9E-05 34.5 8.9 78 256-342 28-108 (131)
377 TIGR00665 DnaB replicative DNA 88.2 1.1 2.3E-05 47.4 6.6 141 209-366 183-353 (434)
378 PRK05416 glmZ(sRNA)-inactivati 88.2 8.4 0.00018 38.4 12.5 82 219-303 8-104 (288)
379 PHA00729 NTP-binding motif con 88.1 5 0.00011 38.5 10.3 72 307-378 59-138 (226)
380 PRK14965 DNA polymerase III su 88.1 5.4 0.00012 43.8 12.0 41 329-370 118-160 (576)
381 PRK14960 DNA polymerase III su 88.0 1.5 3.3E-05 48.4 7.6 40 329-369 117-158 (702)
382 PRK14948 DNA polymerase III su 88.0 5.6 0.00012 44.1 12.1 30 329-358 120-151 (620)
383 PRK08760 replicative DNA helic 88.0 2 4.4E-05 45.9 8.5 144 207-365 215-386 (476)
384 PRK13767 ATP-dependent helicas 88.0 4 8.7E-05 47.2 11.5 89 256-355 284-378 (876)
385 KOG0921 Dosage compensation co 88.0 1.4 3.1E-05 49.5 7.3 140 212-370 388-537 (1282)
386 PRK13342 recombination factor 87.9 3.2 6.9E-05 43.5 9.8 38 330-369 92-129 (413)
387 PHA02244 ATPase-like protein 87.8 3.5 7.5E-05 42.6 9.6 21 212-233 114-134 (383)
388 PRK08691 DNA polymerase III su 87.7 2 4.4E-05 47.7 8.4 40 329-369 118-159 (709)
389 TIGR01587 cas3_core CRISPR-ass 87.7 3.3 7.1E-05 42.2 9.6 74 256-337 222-302 (358)
390 PRK14963 DNA polymerase III su 87.7 3 6.5E-05 45.0 9.5 27 328-355 114-140 (504)
391 PRK09401 reverse gyrase; Revie 87.6 0.97 2.1E-05 53.6 6.2 71 256-336 328-405 (1176)
392 PRK05896 DNA polymerase III su 87.6 3.1 6.7E-05 45.7 9.6 40 330-370 119-160 (605)
393 PRK14956 DNA polymerase III su 87.5 1.9 4.1E-05 46.0 7.8 40 330-370 121-162 (484)
394 TIGR01650 PD_CobS cobaltochela 87.5 3.7 8E-05 41.6 9.5 22 212-234 59-80 (327)
395 PHA03372 DNA packaging termina 87.4 6.3 0.00014 43.0 11.6 130 216-370 201-339 (668)
396 PRK14969 DNA polymerase III su 87.4 3.9 8.5E-05 44.4 10.3 37 329-365 118-156 (527)
397 PRK05986 cob(I)alamin adenolsy 87.3 4.1 8.9E-05 38.0 9.0 51 329-379 114-169 (191)
398 PRK06321 replicative DNA helic 87.3 3.6 7.9E-05 44.0 9.9 141 209-367 214-388 (472)
399 TIGR02688 conserved hypothetic 87.2 2.3 5E-05 44.6 8.0 51 182-235 172-226 (449)
400 cd01121 Sms Sms (bacterial rad 87.2 7.1 0.00015 40.4 11.7 50 218-279 83-132 (372)
401 PRK09183 transposase/IS protei 87.1 2.9 6.2E-05 41.0 8.4 20 214-234 99-118 (259)
402 PRK04328 hypothetical protein; 87.1 2.7 5.9E-05 40.8 8.2 59 209-279 10-73 (249)
403 PF05876 Terminase_GpA: Phage 87.0 0.94 2E-05 49.5 5.4 146 205-371 19-182 (557)
404 TIGR00959 ffh signal recogniti 87.0 8.7 0.00019 40.5 12.4 156 219-392 101-277 (428)
405 PRK14955 DNA polymerase III su 87.0 3.6 7.9E-05 42.9 9.5 39 328-367 125-165 (397)
406 PRK04195 replication factor C 86.9 4.7 0.0001 43.2 10.6 35 330-364 98-136 (482)
407 PRK14957 DNA polymerase III su 86.9 5.5 0.00012 43.4 11.1 37 329-365 118-156 (546)
408 TIGR01389 recQ ATP-dependent D 86.8 3.1 6.7E-05 45.8 9.4 73 256-337 224-299 (591)
409 PRK13900 type IV secretion sys 86.7 0.79 1.7E-05 46.7 4.3 46 212-269 155-200 (332)
410 TIGR00708 cobA cob(I)alamin ad 86.7 6 0.00013 36.3 9.6 50 329-378 96-150 (173)
411 PRK07940 DNA polymerase III su 86.6 3.5 7.6E-05 43.0 9.1 45 328-373 115-161 (394)
412 TIGR03158 cas3_cyano CRISPR-as 86.6 3.7 8.1E-05 42.2 9.3 71 256-337 272-342 (357)
413 PRK14962 DNA polymerase III su 86.5 1.9 4.2E-05 46.1 7.3 27 328-354 115-143 (472)
414 PRK05595 replicative DNA helic 86.4 1.2 2.7E-05 47.2 5.7 139 209-366 189-359 (444)
415 PHA02542 41 41 helicase; Provi 86.4 2.6 5.7E-05 45.1 8.2 147 207-367 175-353 (473)
416 COG2909 MalT ATP-dependent tra 86.3 1.3 2.8E-05 49.8 5.9 39 332-370 131-172 (894)
417 COG4098 comFA Superfamily II D 86.3 23 0.0005 36.1 14.0 110 255-372 304-420 (441)
418 PRK07399 DNA polymerase III su 86.0 6.4 0.00014 39.8 10.4 56 308-365 103-160 (314)
419 TIGR02237 recomb_radB DNA repa 86.0 6.9 0.00015 36.5 10.1 37 217-264 12-48 (209)
420 COG4962 CpaF Flp pilus assembl 85.9 1.4 2.9E-05 44.8 5.4 66 193-275 153-219 (355)
421 COG0630 VirB11 Type IV secreto 85.9 0.78 1.7E-05 46.3 3.8 49 209-269 135-183 (312)
422 COG1200 RecG RecG-like helicas 85.8 6.8 0.00015 43.2 11.0 93 255-356 472-576 (677)
423 PRK05973 replicative DNA helic 85.7 2.2 4.8E-05 41.3 6.6 80 182-279 25-114 (237)
424 PRK08939 primosomal protein Dn 85.7 7.8 0.00017 39.0 10.8 17 217-234 156-172 (306)
425 COG3973 Superfamily I DNA and 85.5 2.9 6.4E-05 45.3 7.8 98 183-286 191-290 (747)
426 PRK13822 conjugal transfer cou 85.4 0.71 1.5E-05 51.2 3.4 56 218-289 225-280 (641)
427 KOG2036 Predicted P-loop ATPas 85.0 2.8 6.1E-05 46.0 7.4 131 207-370 258-413 (1011)
428 TIGR02767 TraG-Ti Ti-type conj 84.9 0.82 1.8E-05 50.5 3.6 49 218-279 212-260 (623)
429 PTZ00293 thymidine kinase; Pro 84.8 6.9 0.00015 37.2 9.3 38 217-265 4-41 (211)
430 PRK14951 DNA polymerase III su 84.8 3.9 8.5E-05 45.1 8.8 42 329-371 123-166 (618)
431 COG2256 MGS1 ATPase related to 84.5 5.3 0.00011 41.4 8.9 15 219-234 50-64 (436)
432 PHA02653 RNA helicase NPH-II; 84.5 3.3 7.1E-05 46.3 8.1 73 256-335 395-469 (675)
433 PRK09694 helicase Cas3; Provis 84.5 7.6 0.00017 44.7 11.1 77 256-339 560-647 (878)
434 PRK06067 flagellar accessory p 84.4 5.2 0.00011 38.2 8.6 59 209-279 12-75 (234)
435 TIGR00416 sms DNA repair prote 84.3 8.7 0.00019 40.9 10.9 50 218-279 95-144 (454)
436 PRK05636 replicative DNA helic 84.3 2.1 4.6E-05 46.1 6.4 141 207-365 251-422 (505)
437 PRK10416 signal recognition pa 84.1 25 0.00054 35.6 13.7 18 217-235 114-131 (318)
438 TIGR03499 FlhF flagellar biosy 83.8 2.7 5.9E-05 41.7 6.5 19 216-235 193-211 (282)
439 COG0556 UvrB Helicase subunit 83.8 23 0.0005 38.2 13.3 115 255-378 445-567 (663)
440 PRK04841 transcriptional regul 83.7 11 0.00023 43.5 12.3 39 332-370 123-164 (903)
441 KOG0298 DEAD box-containing he 83.7 3.1 6.7E-05 48.6 7.5 148 216-368 373-550 (1394)
442 KOG0733 Nuclear AAA ATPase (VC 83.4 15 0.00032 40.3 11.9 110 332-469 606-732 (802)
443 PF12846 AAA_10: AAA-like doma 83.3 2.4 5.1E-05 41.5 5.9 42 218-270 2-43 (304)
444 cd01127 TrwB Bacterial conjuga 83.3 1.2 2.6E-05 46.7 3.9 52 211-273 36-87 (410)
445 PRK00080 ruvB Holliday junctio 83.2 6.5 0.00014 39.8 9.1 17 218-235 52-68 (328)
446 TIGR02012 tigrfam_recA protein 83.2 5 0.00011 40.6 8.2 38 218-266 56-93 (321)
447 TIGR00635 ruvB Holliday juncti 83.2 2.3 5E-05 42.4 5.8 15 218-233 31-45 (305)
448 PRK13876 conjugal transfer cou 83.0 0.78 1.7E-05 51.0 2.5 49 218-279 145-193 (663)
449 KOG0330 ATP-dependent RNA heli 83.0 4 8.7E-05 42.0 7.2 71 256-335 300-373 (476)
450 PRK05580 primosome assembly pr 83.0 12 0.00025 42.1 11.8 103 261-370 431-551 (679)
451 PRK14971 DNA polymerase III su 83.0 13 0.00028 41.2 11.9 42 328-370 119-162 (614)
452 TIGR03817 DECH_helic helicase/ 83.0 6.1 0.00013 44.8 9.6 78 256-339 271-356 (742)
453 PRK06645 DNA polymerase III su 82.9 6.3 0.00014 42.5 9.2 40 328-368 126-167 (507)
454 PRK13880 conjugal transfer cou 82.8 0.88 1.9E-05 50.5 2.8 46 218-276 176-221 (636)
455 TIGR03819 heli_sec_ATPase heli 82.7 1.7 3.7E-05 44.4 4.7 62 188-268 155-217 (340)
456 cd01128 rho_factor Transcripti 82.6 4.2 9E-05 39.7 7.1 19 214-233 13-31 (249)
457 KOG0338 ATP-dependent RNA heli 82.2 4.5 9.8E-05 43.0 7.4 72 256-336 426-500 (691)
458 COG2805 PilT Tfp pilus assembl 82.1 1 2.2E-05 44.9 2.6 124 219-359 127-250 (353)
459 PRK14701 reverse gyrase; Provi 82.0 2.4 5.1E-05 51.9 6.2 76 256-338 330-409 (1638)
460 KOG1513 Nuclear helicase MOP-3 82.0 1.1 2.3E-05 49.9 2.9 149 207-374 269-460 (1300)
461 PRK14954 DNA polymerase III su 81.8 6 0.00013 43.8 8.7 36 328-363 125-162 (620)
462 PRK09165 replicative DNA helic 81.8 3.4 7.4E-05 44.5 6.7 34 209-244 205-242 (497)
463 KOG1133 Helicase of the DEAD s 81.7 2 4.4E-05 47.1 4.8 45 197-247 15-63 (821)
464 PF10412 TrwB_AAD_bind: Type I 81.6 1.9 4.1E-05 44.9 4.6 52 212-274 10-61 (386)
465 PRK13341 recombination factor 81.5 9.8 0.00021 43.0 10.4 41 330-372 109-149 (725)
466 TIGR03345 VI_ClpV1 type VI sec 81.5 11 0.00023 43.6 10.9 27 207-234 192-224 (852)
467 KOG0652 26S proteasome regulat 81.3 7.3 0.00016 38.2 7.9 41 332-372 266-322 (424)
468 TIGR03346 chaperone_ClpB ATP-d 81.2 9.2 0.0002 44.1 10.4 17 218-235 195-211 (852)
469 PRK10865 protein disaggregatio 81.0 4.5 9.7E-05 46.6 7.7 41 332-372 273-319 (857)
470 PRK11034 clpA ATP-dependent Cl 80.9 61 0.0013 36.9 16.4 40 332-371 280-326 (758)
471 COG2842 Uncharacterized ATPase 80.7 6 0.00013 39.3 7.4 110 212-367 89-201 (297)
472 PF14516 AAA_35: AAA-like doma 80.6 7.8 0.00017 39.4 8.6 37 207-245 20-57 (331)
473 COG2109 BtuR ATP:corrinoid ade 80.4 5.2 0.00011 37.2 6.4 50 330-379 122-176 (198)
474 PRK14959 DNA polymerase III su 80.2 7.2 0.00016 43.1 8.6 42 329-371 118-161 (624)
475 TIGR00073 hypB hydrogenase acc 80.1 21 0.00046 33.3 10.9 22 218-241 23-44 (207)
476 PRK07133 DNA polymerase III su 80.1 6.8 0.00015 44.0 8.5 41 329-370 117-159 (725)
477 KOG0341 DEAD-box protein abstr 80.1 6.3 0.00014 40.5 7.4 86 255-355 420-509 (610)
478 TIGR02397 dnaX_nterm DNA polym 80.0 12 0.00025 38.0 9.8 32 328-359 115-148 (355)
479 PRK06305 DNA polymerase III su 79.9 9.8 0.00021 40.5 9.4 35 329-363 120-156 (451)
480 PRK08058 DNA polymerase III su 79.7 8.5 0.00018 39.1 8.5 37 328-364 108-146 (329)
481 PF05496 RuvB_N: Holliday junc 79.5 8.7 0.00019 36.9 7.8 14 219-233 52-65 (233)
482 PHA02558 uvsW UvsW helicase; P 79.5 6.5 0.00014 42.3 8.0 74 256-337 344-420 (501)
483 PRK06647 DNA polymerase III su 79.4 12 0.00027 40.9 10.1 41 328-369 117-159 (563)
484 cd00983 recA RecA is a bacter 79.2 6.1 0.00013 40.1 7.2 51 207-268 39-95 (325)
485 TIGR03689 pup_AAA proteasome A 79.2 5.3 0.00012 43.1 7.1 40 331-370 290-343 (512)
486 PRK11747 dinG ATP-dependent DN 79.0 14 0.0003 41.6 10.7 109 356-473 454-579 (697)
487 COG1199 DinG Rad3-related DNA 78.8 14 0.0003 41.2 10.6 109 357-473 402-525 (654)
488 PRK11131 ATP-dependent RNA hel 78.7 13 0.00027 44.6 10.4 74 256-335 286-360 (1294)
489 PRK07773 replicative DNA helic 78.6 3.6 7.8E-05 47.6 6.0 37 207-245 203-243 (886)
490 KOG0953 Mitochondrial RNA heli 78.4 11 0.00023 40.7 8.7 169 272-457 369-552 (700)
491 PRK09376 rho transcription ter 78.3 7.9 0.00017 40.4 7.7 19 214-233 166-184 (416)
492 KOG2543 Origin recognition com 78.2 15 0.00033 38.0 9.5 43 329-371 114-161 (438)
493 TIGR01967 DEAH_box_HrpA ATP-de 78.2 14 0.0003 44.3 10.6 73 257-335 280-353 (1283)
494 PRK05564 DNA polymerase III su 78.2 8 0.00017 38.8 7.7 36 328-363 91-128 (313)
495 TIGR01243 CDC48 AAA family ATP 78.1 14 0.00031 41.7 10.5 18 216-234 211-228 (733)
496 PRK09302 circadian clock prote 78.1 5.8 0.00013 42.8 7.1 61 207-279 258-323 (509)
497 PLN03137 ATP-dependent DNA hel 78.1 8 0.00017 45.4 8.4 72 256-336 680-754 (1195)
498 CHL00095 clpC Clp protease ATP 78.0 5.1 0.00011 46.0 7.0 35 200-235 180-217 (821)
499 PRK09354 recA recombinase A; P 77.9 8.8 0.00019 39.3 7.9 50 209-269 46-101 (349)
500 PRK13766 Hef nuclease; Provisi 77.8 17 0.00038 41.3 11.2 77 255-340 364-451 (773)
No 1
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.2e-58 Score=458.38 Aligned_cols=401 Identities=23% Similarity=0.304 Sum_probs=326.0
Q ss_pred CCCCchHHHHhhhHHHHHhhhccCC-----CCchhHHHHHHHHhhhhcc---cCCcc----cccccccCCCCCCCccccc
Q 011963 1 MTKGDDAVMRRRNKAKIKKLNNKNT-----SSNVSARVAAVIAAKKRRK---SGKRR----QCQGMCFSLPTLDDPFNDR 68 (474)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~k~~~k---~~~~~----~~~~~~~~~~~~~~~~~~~ 68 (474)
|||++|..++++++..+|++.+.++ .-.++++++.+++.+.++| .+++. +|++||+..++.++|++..
T Consensus 84 MA~~~d~~~sd~~~~e~kk~eRkn~dd~~p~~~vr~dI~~e~aae~~~kym~e~k~~~~~~e~~~~~leydsd~nPi~~~ 163 (731)
T KOG0339|consen 84 MAKIEDQAQSDKKPLEQKKKERKNDDDDDPTATVRADIDEEDAAEALFKYMSENKRAGAAKECDDMCLEYDSDGNPIAPD 163 (731)
T ss_pred hhhhhhhhhccCCccchHHHhhhccCCCccchhhhcchhhHHhHHHHHHHhhhcccchhhhhcccceeecCCCCCccCcc
Confidence 9999999999999999999988872 3468999999999999999 88887 8999999999999999983
Q ss_pred c--chhhhhhhhhhhhhhhcccccccccccccccccccccccCCCCCCCcchhhHHHHhhhccccccccccccccccccc
Q 011963 69 Y--DKRETETKATKKRNSLQLDKNKNAFVKGKSAVSKKETKRDNNEKPGHLEQTKEKAINLKNSQDKSLLFIDGVEKRTG 146 (474)
Q Consensus 69 ~--~~~~~~~~~~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (474)
+ .++....+.++.... +...+..+. ..+|.++.....
T Consensus 164 kr~idpl~~idhs~i~y~----------------------p~~kdfy~e-------------------~esI~gl~~~d~ 202 (731)
T KOG0339|consen 164 KRQIDPLPPIDHSEIDYE----------------------PFNKDFYEE-------------------HESIEGLTKMDV 202 (731)
T ss_pred cccCCCCCCcchhhcccc----------------------ccccccccC-------------------hhhhhccccccc
Confidence 2 221111111111000 000000000 011222221111
Q ss_pred ccc--ccccccCCCCCCCCCCCCcccccCCChhHHhh----hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcE
Q 011963 147 NVE--RAEVHLNGKSCANGHHGQACEKLDCPSKFLIL----CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDI 220 (474)
Q Consensus 147 ~~e--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dv 220 (474)
-.- ..++.+.| ++.|.+...| +.+.|+.+++..-|.+|||| |.+++|..++|+||
T Consensus 203 ~~~r~~Lnlrv~g--------------~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpi-----q~qalptalsgrdv 263 (731)
T KOG0339|consen 203 IDLRLTLNLRVSG--------------SSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPI-----QCQALPTALSGRDV 263 (731)
T ss_pred hhhHhhhcceecc--------------CCCCCCcchhhhcCchHHHHHHHhhhhcccCCcc-----cccccccccccccc
Confidence 000 01111111 2333333333 68999999999999999999 99999999999999
Q ss_pred EEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHH
Q 011963 221 LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQI 299 (474)
Q Consensus 221 l~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~ 299 (474)
+.+|.|| ||||.||+.|++.+++.+++-.. ..+|.+|||+||||||.||+.+|++| +.+||+++++|||.+..+|.
T Consensus 264 igIAktg-SgktaAfi~pm~~himdq~eL~~--g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~ 340 (731)
T KOG0339|consen 264 IGIAKTG-SGKTAAFIWPMIVHIMDQPELKP--GEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQS 340 (731)
T ss_pred hheeecc-CcchhHHHHHHHHHhcchhhhcC--CCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHH
Confidence 9999999 99999999999999999876553 37999999999999999999999999 66799999999999999999
Q ss_pred HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHH
Q 011963 300 TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAV 376 (474)
Q Consensus 300 ~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~ 376 (474)
..|.. +|+|||||||||++++..+..++.++.||||||||+|++ ..+++.|..++.+++|+|+|||||+..++.++
T Consensus 341 k~Lk~-g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~la 419 (731)
T KOG0339|consen 341 KELKE-GAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLA 419 (731)
T ss_pred Hhhhc-CCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHH
Confidence 99997 999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhC
Q 011963 377 QNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK 456 (474)
Q Consensus 377 ~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~ 456 (474)
+.+|.+|+ .|..+.. ...+..|+|.+.+|++...|+.+|+..|..+. ..+++||||.-...++.++..|...
T Consensus 420 rd~L~dpV-rvVqg~v-gean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~------S~gkvlifVTKk~~~e~i~a~Lklk 491 (731)
T KOG0339|consen 420 RDILSDPV-RVVQGEV-GEANEDITQTVSVCPSEEKKLNWLLRHLVEFS------SEGKVLIFVTKKADAEEIAANLKLK 491 (731)
T ss_pred HHHhcCCe-eEEEeeh-hccccchhheeeeccCcHHHHHHHHHHhhhhc------cCCcEEEEEeccCCHHHHHHHhccc
Confidence 99999998 5555433 67888999999999999999987777666653 2469999999999999999999999
Q ss_pred CCccc--------chHHHHHHHhhc
Q 011963 457 GYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 457 gi~v~--------~~r~~~i~~Fk~ 473 (474)
||+|. .+|+.++.+||.
T Consensus 492 ~~~v~llhgdkdqa~rn~~ls~fKk 516 (731)
T KOG0339|consen 492 GFNVSLLHGDKDQAERNEVLSKFKK 516 (731)
T ss_pred cceeeeecCchhhHHHHHHHHHHhh
Confidence 99998 788889999974
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-55 Score=453.12 Aligned_cols=277 Identities=18% Similarity=0.321 Sum_probs=255.0
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHh-hhhcCCCCCCcEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIAR-KEKEGFSFTGPFLL 260 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~-~~~~~~~~~~~~al 260 (474)
|++.+..+|+..||..|||| |+++||.+++|+|++++|.|| |||||||+||++.++... .... ...+|++|
T Consensus 98 ls~~~~~~lk~~g~~~PtpI-----Qaq~wp~~l~GrD~v~iA~TG-SGKTLay~lP~i~~l~~~~~~~~--~~~~P~vL 169 (519)
T KOG0331|consen 98 LSEELMKALKEQGFEKPTPI-----QAQGWPIALSGRDLVGIARTG-SGKTLAYLLPAIVHLNNEQGKLS--RGDGPIVL 169 (519)
T ss_pred ccHHHHHHHHhcCCCCCchh-----hhcccceeccCCceEEEeccC-CcchhhhhhHHHHHHHhcccccc--CCCCCeEE
Confidence 99999999999999999999 999999999999999999999 999999999999999973 2221 23699999
Q ss_pred EEeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccc
Q 011963 261 FLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339 (474)
Q Consensus 261 il~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEa 339 (474)
||+||||||.||..++..+ ..++++++|+|||.+...|.+.|.+ ++||+|||||||+++|+.+.++|++|.|||+|||
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~-gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEA 248 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER-GVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEA 248 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc-CCcEEEeCChHHHHHHHcCCccccceeEEEeccH
Confidence 9999999999999999999 5558999999999999999999999 8999999999999999999999999999999999
Q ss_pred cccCC---hhHHHHHHhhC-CCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCC-cccccCCcEEEEEEcCCchhHH
Q 011963 340 DSLSK---GDTLSLIRQSI-SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQS-VASQSACIIQSVNVCASDEEKI 414 (474)
Q Consensus 340 d~ll~---~~~l~~Il~~l-~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~-~~~~~~~i~q~~~~~~~~~~K~ 414 (474)
|+|++ .++++.|+..+ ++.+|+++||||||.+|..++..||.+|. .|.++.. ......+|.|.+..|+ ...|.
T Consensus 249 DrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~-~i~ig~~~~~~a~~~i~qive~~~-~~~K~ 326 (519)
T KOG0331|consen 249 DRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPI-QINVGNKKELKANHNIRQIVEVCD-ETAKL 326 (519)
T ss_pred HhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCce-EEEecchhhhhhhcchhhhhhhcC-HHHHH
Confidence 99999 99999999999 56679999999999999999999999998 7777644 4678889999999998 77899
Q ss_pred HHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 415 LKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 415 ~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
..|..+|..+. ... .+++||||+|+..|++|+..|...|+++. .+|+.+++.||+
T Consensus 327 ~~l~~lL~~~~-~~~---~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~Fre 389 (519)
T KOG0331|consen 327 RKLGKLLEDIS-SDS---EGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFRE 389 (519)
T ss_pred HHHHHHHHHHh-ccC---CCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhccc
Confidence 99999999887 333 78999999999999999999999888876 899999999986
No 3
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.2e-55 Score=426.06 Aligned_cols=268 Identities=16% Similarity=0.194 Sum_probs=251.6
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+.+.++++++..||..||+| |.++||.++.|+|||+.|.|| ||||.||+||++++|+..+ ..++|||
T Consensus 68 v~~~L~~ac~~l~~~~PT~I-----Q~~aiP~~L~g~dvIglAeTG-SGKT~afaLPIl~~LL~~p-------~~~~~lV 134 (476)
T KOG0330|consen 68 VHPELLEACQELGWKKPTKI-----QSEAIPVALGGRDVIGLAETG-SGKTGAFALPILQRLLQEP-------KLFFALV 134 (476)
T ss_pred cCHHHHHHHHHhCcCCCchh-----hhhhcchhhCCCcEEEEeccC-CCchhhhHHHHHHHHHcCC-------CCceEEE
Confidence 99999999999999999999 999999999999999999999 9999999999999999954 5689999
Q ss_pred EeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHc-CCCCCCCcceEEeccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL-KAIDVSGVSLLVVDRL 339 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~-~~~~l~~l~~lViDEa 339 (474)
|+||||||.||..+++.| ...|+++.++.||.+...|...|.+ .|+|||||||||++|+.+ +.|.+..|+|||+|||
T Consensus 135 LtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~k-kPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEA 213 (476)
T KOG0330|consen 135 LTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSK-KPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEA 213 (476)
T ss_pred ecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhc-CCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchH
Confidence 999999999999999999 5669999999999999999999999 899999999999999995 8999999999999999
Q ss_pred cccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHH
Q 011963 340 DSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILK 416 (474)
Q Consensus 340 d~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~ 416 (474)
|++++ .+.+..|+..+|..+|+++||||||..+.++.+..+.+|. .|.+... +.+++++.|+|++++ ..+|..+
T Consensus 214 DrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~-~v~~s~k-y~tv~~lkQ~ylfv~-~k~K~~y 290 (476)
T KOG0330|consen 214 DRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPV-KVAVSSK-YQTVDHLKQTYLFVP-GKDKDTY 290 (476)
T ss_pred HhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCe-EEeccch-hcchHHhhhheEecc-ccccchh
Confidence 99999 8999999999999999999999999999999999999998 8888877 899999999999998 5679988
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 417 GIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 417 l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
|.++|.++. +.++||||+|+..+.+++-.|+..|+.+. ..|-..++.|++
T Consensus 291 LV~ll~e~~-------g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~ 348 (476)
T KOG0330|consen 291 LVYLLNELA-------GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKA 348 (476)
T ss_pred HHHHHHhhc-------CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhc
Confidence 888887663 67899999999999999999999999987 567788999975
No 4
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.2e-53 Score=423.55 Aligned_cols=272 Identities=18% Similarity=0.224 Sum_probs=248.8
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
|+..|++++..+||..|||| |..+||..+.|+|+++||-|| ||||.||.||+|++|+..+.. ....++||
T Consensus 188 LSRPlLka~~~lGy~~PTpI-----Q~a~IPvallgkDIca~A~TG-sGKTAAF~lPiLERLlYrPk~----~~~TRVLV 257 (691)
T KOG0338|consen 188 LSRPLLKACSTLGYKKPTPI-----QVATIPVALLGKDICACAATG-SGKTAAFALPILERLLYRPKK----VAATRVLV 257 (691)
T ss_pred cchHHHHHHHhcCCCCCCch-----hhhcccHHhhcchhhheeccc-CCchhhhHHHHHHHHhcCccc----CcceeEEE
Confidence 99999999999999999999 999999999999999999999 999999999999999987654 24789999
Q ss_pred EeccHHHHHHHHHHHHhcccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHc-CCCCCCCcceEEeccc
Q 011963 262 LVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL-KAIDVSGVSLLVVDRL 339 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~-~~~~l~~l~~lViDEa 339 (474)
|+||||||.||+.+.+.|+.+ .|.++.++||.+...|...|++ +|||||+|||||++||.+ ..|+++++..||+|||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs-~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEA 336 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS-RPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEA 336 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh-CCCEEEecchhHHHHhccCCCccccceeEEEechH
Confidence 999999999999999999666 9999999999999999999999 899999999999999998 7899999999999999
Q ss_pred cccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcC--CchhHH
Q 011963 340 DSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCA--SDEEKI 414 (474)
Q Consensus 340 d~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~--~~~~K~ 414 (474)
|+||+ .++|..|++.||+++|+++|||||+..|.+++..-|+.|+ .|.++.. ..+...+.|.|+.+. .+.++.
T Consensus 337 DRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPv-rifvd~~-~~~a~~LtQEFiRIR~~re~dRe 414 (691)
T KOG0338|consen 337 DRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPV-RIFVDPN-KDTAPKLTQEFIRIRPKREGDRE 414 (691)
T ss_pred HHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCe-EEEeCCc-cccchhhhHHHheeccccccccH
Confidence 99999 9999999999999999999999999999999999999998 8999876 677788999998664 234566
Q ss_pred HHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 415 LKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 415 ~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
..|..++..+. ..++|||+.|.+.|.+|.-+|--.|+++. .+|-..++.||+
T Consensus 415 a~l~~l~~rtf-------~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~ 474 (691)
T KOG0338|consen 415 AMLASLITRTF-------QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKK 474 (691)
T ss_pred HHHHHHHHHhc-------ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHh
Confidence 55555555543 56889999999999999999999999987 677788999986
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-51 Score=436.61 Aligned_cols=272 Identities=20% Similarity=0.306 Sum_probs=245.9
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
|++.++++|.++||..|||| |.++||.++.|+|++++|+|| ||||+||+||+|+.|...... ..+.+||
T Consensus 36 l~~~ll~~l~~~gf~~pt~I-----Q~~~IP~~l~g~Dvi~~A~TG-sGKT~Af~lP~l~~l~~~~~~-----~~~~aLi 104 (513)
T COG0513 36 LSPELLQALKDLGFEEPTPI-----QLAAIPLILAGRDVLGQAQTG-TGKTAAFLLPLLQKILKSVER-----KYVSALI 104 (513)
T ss_pred CCHHHHHHHHHcCCCCCCHH-----HHHHHHHHhCCCCEEEECCCC-ChHHHHHHHHHHHHHhccccc-----CCCceEE
Confidence 89999999999999999999 999999999999999999999 999999999999997753111 1122999
Q ss_pred EeccHHHHHHHHHHHHhc-ccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEa 339 (474)
|+||||||.||++++..+ .+. ++++++++||.+...|...|.. ++||||||||||++|+.++.++++++++||+|||
T Consensus 105 l~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~-~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEA 183 (513)
T COG0513 105 LAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR-GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEA 183 (513)
T ss_pred ECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc-CCCEEEECccHHHHHHHcCCcchhhcCEEEeccH
Confidence 999999999999999999 555 7999999999999999999998 7999999999999999999999999999999999
Q ss_pred cccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCC-cccccCCcEEEEEEcCCchhHHH
Q 011963 340 DSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQS-VASQSACIIQSVNVCASDEEKIL 415 (474)
Q Consensus 340 d~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~-~~~~~~~i~q~~~~~~~~~~K~~ 415 (474)
|+|++ .+++..|+..+|.++|+++||||+|..+..+++.+|.+|. .|.+... ...+...|.|.++.|.+...|+
T Consensus 184 DrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~-~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~- 261 (513)
T COG0513 184 DRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPV-EIEVSVEKLERTLKKIKQFYLEVESEEEKL- 261 (513)
T ss_pred hhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCc-EEEEccccccccccCceEEEEEeCCHHHHH-
Confidence 99999 9999999999999999999999999999999999999998 8888743 1237889999999998655588
Q ss_pred HHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 416 KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 416 ~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
.+|..++.... ..++||||+|+..|+.|+..|...|++|. .+|+.+++.|++
T Consensus 262 ---~~L~~ll~~~~---~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~ 321 (513)
T COG0513 262 ---ELLLKLLKDED---EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKD 321 (513)
T ss_pred ---HHHHHHHhcCC---CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHc
Confidence 56666666655 66899999999999999999999999987 788899999985
No 6
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-51 Score=415.02 Aligned_cols=270 Identities=17% Similarity=0.187 Sum_probs=246.4
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
|+..++++|++.+|..||.| |+.+||..|.|+|||+.|.|| |||||||++|+|+.|+..++... .|..|||
T Consensus 76 ls~~t~kgLke~~fv~~tei-----Q~~~Ip~aL~G~DvlGAAkTG-SGKTLAFlvPvlE~L~r~kWs~~---DGlGalI 146 (758)
T KOG0343|consen 76 LSQKTLKGLKEAKFVKMTEI-----QRDTIPMALQGHDVLGAAKTG-SGKTLAFLVPVLEALYRLKWSPT---DGLGALI 146 (758)
T ss_pred CchHHHHhHhhcCCccHHHH-----HHhhcchhccCcccccccccC-CCceeeehHHHHHHHHHcCCCCC---CCceeEE
Confidence 99999999999999999999 999999999999999999999 99999999999999999888766 6999999
Q ss_pred EeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHc-CCCCCCCcceEEeccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL-KAIDVSGVSLLVVDRL 339 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~-~~~~l~~l~~lViDEa 339 (474)
|+||||||.|++.++..+ +++++.++.++||.+......++.. ++|||||||||+.||.. ..++.++|++||+|||
T Consensus 147 ISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~--mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEA 224 (758)
T KOG0343|consen 147 ISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQ--MNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEA 224 (758)
T ss_pred ecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhc--CCeEEechHHHHHHhhhcCCCCCCcceEEEeccH
Confidence 999999999999999999 5559999999999999888888875 89999999999999987 6799999999999999
Q ss_pred cccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccC-CcccccCCcEEEEEEcCCchhHHH
Q 011963 340 DSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQ-SVASQSACIIQSVNVCASDEEKIL 415 (474)
Q Consensus 340 d~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~-~~~~~~~~i~q~~~~~~~~~~K~~ 415 (474)
|+|+| ...|..|+..+|..+|+++||||.+..|.++++..|.+|. +|.+.. ...+++.++.|+|+.|+ ..+|+
T Consensus 225 DR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~-~vsvhe~a~~atP~~L~Q~y~~v~-l~~Ki- 301 (758)
T KOG0343|consen 225 DRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPV-YVSVHENAVAATPSNLQQSYVIVP-LEDKI- 301 (758)
T ss_pred HHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCc-EEEEeccccccChhhhhheEEEEe-hhhHH-
Confidence 99999 8999999999999999999999999999999999999998 888763 34788999999999997 67899
Q ss_pred HHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhC--CCccc--------chHHHHHHHh
Q 011963 416 KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK--GYSIS--------TGSNCIVSHI 471 (474)
Q Consensus 416 ~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~--gi~v~--------~~r~~~i~~F 471 (474)
.+|..||..|. ..++|||++||+++.+++..+... |++.. ..|-.+...|
T Consensus 302 ---~~L~sFI~shl---k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F 361 (758)
T KOG0343|consen 302 ---DMLWSFIKSHL---KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKF 361 (758)
T ss_pred ---HHHHHHHHhcc---ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHH
Confidence 66667777777 889999999999999999999875 77765 3444566666
No 7
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=4.9e-51 Score=409.24 Aligned_cols=274 Identities=15% Similarity=0.157 Sum_probs=247.7
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
|++.+++++.+|||..+|+| |..+||+++.|+|+++.|.|| ||||+||+||+++.+...+.... ++..+||
T Consensus 89 LS~~t~kAi~~~GF~~MT~V-----Q~~ti~pll~gkDvl~~AKTG-tGKTlAFLiPaie~l~k~~~~~r---~~~~vlI 159 (543)
T KOG0342|consen 89 LSPLTLKAIKEMGFETMTPV-----QQKTIPPLLEGKDVLAAAKTG-TGKTLAFLLPAIELLRKLKFKPR---NGTGVLI 159 (543)
T ss_pred cCHHHHHHHHhcCccchhHH-----HHhhcCccCCCccceeeeccC-CCceeeehhHHHHHHHhcccCCC---CCeeEEE
Confidence 99999999999999999999 999999999999999999999 99999999999999999877655 7999999
Q ss_pred EeccHHHHHHHHHHHHhc-ccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHc-CCCCCCCcceEEecc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL-KAIDVSGVSLLVVDR 338 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~-~~~~l~~l~~lViDE 338 (474)
|+||||||.|++.+++.| .++ ++.+..++||.......+.+.+ +|+|||||||||+||+++ ..+.+.++++|||||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k-~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDE 238 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVK-GCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDE 238 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhc-cccEEEeCCchHHhHhhcCCcchhhccceeEeec
Confidence 999999999999999998 777 9999999999999999999999 999999999999999999 677888999999999
Q ss_pred ccccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcC-CceEEEccC-CcccccCCcEEEEEEcCCchhH
Q 011963 339 LDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLG-SINRLSLNQ-SVASQSACIIQSVNVCASDEEK 413 (474)
Q Consensus 339 ad~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~-p~~~v~v~~-~~~~~~~~i~q~~~~~~~~~~K 413 (474)
||++++ +++|..|+..+|..+|+++||||+|..|+++++..|.. |. +|.+.+ ....+...++|.|++|++ ..+
T Consensus 239 ADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~-~v~~~d~~~~~The~l~Qgyvv~~~-~~~ 316 (543)
T KOG0342|consen 239 ADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPV-FVNVDDGGERETHERLEQGYVVAPS-DSR 316 (543)
T ss_pred chhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCce-EeecCCCCCcchhhcccceEEeccc-cch
Confidence 999999 99999999999999999999999999999999999876 55 776643 457788999999999985 446
Q ss_pred HHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 414 ILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 414 ~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
+. +|..+++++. ...++||||+|+..+..++++|++..++|. ..|-.++.+|++
T Consensus 317 f~----ll~~~LKk~~--~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~k 378 (543)
T KOG0342|consen 317 FS----LLYTFLKKNI--KRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCK 378 (543)
T ss_pred HH----HHHHHHHHhc--CCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhh
Confidence 74 4444455544 137999999999999999999999999997 566678999975
No 8
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.9e-50 Score=405.26 Aligned_cols=275 Identities=19% Similarity=0.206 Sum_probs=232.2
Q ss_pred hhHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCC-cEEEEcCCCcchhHHHHHHHHHHHHHHhhhh----cCCCCC
Q 011963 181 LCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAK-DILETSGSSSTIVQIAWIVATAADSIARKEK----EGFSFT 255 (474)
Q Consensus 181 ~l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~-dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~----~~~~~~ 255 (474)
+|+..++++|..+||..|||| |..+||+++.|+ |||+.|.|| |||||||.||+++.+...... ......
T Consensus 187 ~lp~~iL~aL~~~gFs~Pt~I-----Qsl~lp~ai~gk~DIlGaAeTG-SGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k 260 (731)
T KOG0347|consen 187 FLPMEILRALSNLGFSRPTEI-----QSLVLPAAIRGKVDILGAAETG-SGKTLAFGIPIVERLLESSDDSQELSNTSAK 260 (731)
T ss_pred CCCHHHHHHHHhcCCCCCccc-----hhhcccHhhccchhcccccccC-CCceeeecchhhhhhhhccchHhhhhhHHhc
Confidence 399999999999999999999 999999999995 999999999 999999999999966653211 111123
Q ss_pred Cc--EEEEEeccHHHHHHHHHHHHhcccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCC---CCC
Q 011963 256 GP--FLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI---DVS 329 (474)
Q Consensus 256 ~~--~alil~PtreLa~Qi~~~~~~l~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~---~l~ 329 (474)
++ .+||++||||||.||.+++..+... +|++.+++||.....|.+.|.. .|+|+||||||||.+++.... .++
T Consensus 261 ~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~-~p~IVVATPGRlweli~e~n~~l~~~k 339 (731)
T KOG0347|consen 261 YVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ-RPDIVVATPGRLWELIEEDNTHLGNFK 339 (731)
T ss_pred cCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc-CCCEEEecchHHHHHHHhhhhhhhhhh
Confidence 44 5999999999999999999999554 9999999999999999999998 899999999999999998655 577
Q ss_pred CcceEEeccccccCC---hhHHHHHHhhCC-----CCCcEEEEEccCCcc---------------------HHHHHHHh-
Q 011963 330 GVSLLVVDRLDSLSK---GDTLSLIRQSIS-----GKPHTVVFNDCLTYT---------------------SVPAVQNL- 379 (474)
Q Consensus 330 ~l~~lViDEad~ll~---~~~l~~Il~~l~-----~~~q~llfSAT~~~~---------------------v~~l~~~~- 379 (474)
.|+||||||||||++ ++++..|+..+. ..+|+++||||++-. ++.++...
T Consensus 340 ~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig 419 (731)
T KOG0347|consen 340 KVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIG 419 (731)
T ss_pred hceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhC
Confidence 899999999999999 999999998885 568999999999632 22222222
Q ss_pred h-cCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCC
Q 011963 380 L-LGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458 (474)
Q Consensus 380 l-~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi 458 (474)
+ ..|. .|++++. ..+..++....+.|+ ..+|..+||++|..+ ++++|||||+++++.+|+-+|+..+|
T Consensus 420 ~~~kpk-iiD~t~q-~~ta~~l~Es~I~C~-~~eKD~ylyYfl~ry--------PGrTlVF~NsId~vKRLt~~L~~L~i 488 (731)
T KOG0347|consen 420 FRGKPK-IIDLTPQ-SATASTLTESLIECP-PLEKDLYLYYFLTRY--------PGRTLVFCNSIDCVKRLTVLLNNLDI 488 (731)
T ss_pred ccCCCe-eEecCcc-hhHHHHHHHHhhcCC-ccccceeEEEEEeec--------CCceEEEechHHHHHHHHHHHhhcCC
Confidence 2 3454 8888877 678889999999997 567998888888776 89999999999999999999999999
Q ss_pred ccc--------chHHHHHHHhhc
Q 011963 459 SIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 459 ~v~--------~~r~~~i~~Fk~ 473 (474)
+.. -+|-..++.|++
T Consensus 489 ~p~~LHA~M~QKqRLknLEkF~~ 511 (731)
T KOG0347|consen 489 PPLPLHASMIQKQRLKNLEKFKQ 511 (731)
T ss_pred CCchhhHHHHHHHHHHhHHHHhc
Confidence 876 345566888875
No 9
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-48 Score=387.70 Aligned_cols=275 Identities=16% Similarity=0.241 Sum_probs=242.1
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
|+++++++|..+||..+||+ |..+||.++.++||++.|+|| ||||+||++|+++.|........+ ....+||
T Consensus 13 L~~~l~~~l~~~GF~~mTpV-----Qa~tIPlll~~KDVvveavTG-SGKTlAFllP~le~i~rr~~~~~~--~~vgalI 84 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPV-----QAATIPLLLKNKDVVVEAVTG-SGKTLAFLLPMLEIIYRREAKTPP--GQVGALI 84 (567)
T ss_pred ccHHHHHHHHhcCCcccCHH-----HHhhhHHHhcCCceEEEcCCC-CCchhhHHHHHHHHHHhhccCCCc--cceeEEE
Confidence 78999999999999999999 999999999999999999999 999999999999999776544332 2578999
Q ss_pred EeccHHHHHHHHHHHHhc-ccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcC--CCCCCCcceEEec
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK--AIDVSGVSLLVVD 337 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~--~~~l~~l~~lViD 337 (474)
|+||||||.||+.++..| .++ ++.+.+++||.+....+..+...+|+|||||||||.+++++. .+++.+|++||+|
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 999999999999999998 565 899999999999999999998889999999999999999984 4566799999999
Q ss_pred cccccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCc-ccccCCcEEEEEEcCCchhH
Q 011963 338 RLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSV-ASQSACIIQSVNVCASDEEK 413 (474)
Q Consensus 338 Ead~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~-~~~~~~i~q~~~~~~~~~~K 413 (474)
|||+++| ...++.|+..+|+.+++-+||||++.+|.++++..|+||+ .|.|.... ..++..+..+|+.|. ...|
T Consensus 165 EADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv-~V~V~~k~~~~tPS~L~~~Y~v~~-a~eK 242 (567)
T KOG0345|consen 165 EADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPV-RVSVKEKSKSATPSSLALEYLVCE-ADEK 242 (567)
T ss_pred chHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCce-eeeecccccccCchhhcceeeEec-HHHH
Confidence 9999999 9999999999999999999999999999999999999998 88887641 237788999999997 5679
Q ss_pred HHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhC--CCccc--------chHHHHHHHhhc
Q 011963 414 ILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK--GYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 414 ~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~--gi~v~--------~~r~~~i~~Fk~ 473 (474)
+..|+++|. ++. ..++|||+.||.++++.+..|... +++.. .+|+.++..|++
T Consensus 243 ~~~lv~~L~----~~~---~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~ 305 (567)
T KOG0345|consen 243 LSQLVHLLN----NNK---DKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRK 305 (567)
T ss_pred HHHHHHHHh----ccc---cccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHh
Confidence 955555554 444 789999999999999999999876 22222 678999999975
No 10
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=6.8e-48 Score=388.14 Aligned_cols=284 Identities=16% Similarity=0.265 Sum_probs=255.0
Q ss_pred CCChhHHhh----hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhh
Q 011963 173 DCPSKFLIL----CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKE 248 (474)
Q Consensus 173 ~~p~~~~~~----l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~ 248 (474)
..|.++..| ++..+++.+...||..|||| |+++||.+++.+|+|+.|.|| ||||+||++|++..|...+.
T Consensus 239 ~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpI-----qR~aipl~lQ~rD~igvaETg-sGktaaf~ipLl~~IsslP~ 312 (673)
T KOG0333|consen 239 RLPNPLRNWEESGFPLELLSVIKKPGYKEPTPI-----QRQAIPLGLQNRDPIGVAETG-SGKTAAFLIPLLIWISSLPP 312 (673)
T ss_pred CCCccccChhhcCCCHHHHHHHHhcCCCCCchH-----HHhhccchhccCCeeeEEecc-CCccccchhhHHHHHHcCCC
Confidence 456666666 88889999999999999999 999999999999999999999 99999999999999988663
Q ss_pred hcC--CCCCCcEEEEEeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCC
Q 011963 249 KEG--FSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA 325 (474)
Q Consensus 249 ~~~--~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~ 325 (474)
... ..-.||+++||+||||||.||..+-.+| +++|++++.++||.+.++|--.+.. ||+|+|||||||++.|.+..
T Consensus 313 ~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~-gceiviatPgrLid~Lenr~ 391 (673)
T KOG0333|consen 313 MARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSM-GCEIVIATPGRLIDSLENRY 391 (673)
T ss_pred cchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhc-cceeeecCchHHHHHHHHHH
Confidence 222 2346999999999999999999999999 6679999999999999999888888 89999999999999999999
Q ss_pred CCCCCcceEEeccccccCC---hhHHHHHHhhCCC---C----------------------CcEEEEEccCCccHHHHHH
Q 011963 326 IDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISG---K----------------------PHTVVFNDCLTYTSVPAVQ 377 (474)
Q Consensus 326 ~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~---~----------------------~q~llfSAT~~~~v~~l~~ 377 (474)
+.++.+.++|+||||+|+| .+++..||.++|. . +|+++||||+|+.+..+++
T Consensus 392 lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar 471 (673)
T KOG0333|consen 392 LVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLAR 471 (673)
T ss_pred HHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHH
Confidence 9999999999999999999 9999999999962 1 7999999999999999999
Q ss_pred HhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCC
Q 011963 378 NLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKG 457 (474)
Q Consensus 378 ~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~g 457 (474)
.||.+|+ +|.++.. ..+.+-|+|.++.+. +++|...|..+|.. ++ .+++|||+|+.+.|+.||..|.+.|
T Consensus 472 ~ylr~pv-~vtig~~-gk~~~rveQ~v~m~~-ed~k~kkL~eil~~----~~---~ppiIIFvN~kk~~d~lAk~LeK~g 541 (673)
T KOG0333|consen 472 SYLRRPV-VVTIGSA-GKPTPRVEQKVEMVS-EDEKRKKLIEILES----NF---DPPIIIFVNTKKGADALAKILEKAG 541 (673)
T ss_pred HHhhCCe-EEEeccC-CCCccchheEEEEec-chHHHHHHHHHHHh----CC---CCCEEEEEechhhHHHHHHHHhhcc
Confidence 9999998 8888876 677788999999996 67788655555554 44 7899999999999999999999999
Q ss_pred Cccc--------chHHHHHHHhhc
Q 011963 458 YSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 458 i~v~--------~~r~~~i~~Fk~ 473 (474)
|+|. -+|+.++++||+
T Consensus 542 ~~~~tlHg~k~qeQRe~aL~~fr~ 565 (673)
T KOG0333|consen 542 YKVTTLHGGKSQEQRENALADFRE 565 (673)
T ss_pred ceEEEeeCCccHHHHHHHHHHHHh
Confidence 9998 789999999986
No 11
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-48 Score=380.28 Aligned_cols=276 Identities=19% Similarity=0.278 Sum_probs=251.6
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+.+++++.+++.||.+|||| |.+|||.+|+|.|++++|.|| +||||+||+|.+-++..++.... +..+|..|+
T Consensus 227 ~~pevmenIkK~GFqKPtPI-----qSQaWPI~LQG~DliGVAQTg-tgKtL~~L~pg~ihi~aqp~~~~-qr~~p~~lv 299 (629)
T KOG0336|consen 227 CYPEVMENIKKTGFQKPTPI-----QSQAWPILLQGIDLIGVAQTG-TGKTLAFLLPGFIHIDAQPKRRE-QRNGPGVLV 299 (629)
T ss_pred hhHHHHHHHHhccCCCCCcc-----hhcccceeecCcceEEEEecC-CCcCHHHhccceeeeeccchhhh-ccCCCceEE
Confidence 89999999999999999999 999999999999999999999 99999999999998887654333 457999999
Q ss_pred EeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccc
Q 011963 262 LVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS 341 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ 341 (474)
++||||||.|+.-++...++.|++.+|+|||.+...|++.|+. +++|+|+|||||.++...+.++|.++.||||||||+
T Consensus 300 l~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkr-gveiiiatPgrlndL~~~n~i~l~siTYlVlDEADr 378 (629)
T KOG0336|consen 300 LTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKR-GVEIIIATPGRLNDLQMDNVINLASITYLVLDEADR 378 (629)
T ss_pred EeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhc-CceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhh
Confidence 9999999999999999998889999999999999999999999 899999999999999999999999999999999999
Q ss_pred cCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHH
Q 011963 342 LSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGI 418 (474)
Q Consensus 342 ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~ 418 (474)
||| .+++..|+--+.+++|+++.|||||+.|..++..||++|. .|.++...-.....+.|.+++. .+.+|+
T Consensus 379 MLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~-~v~vGsLdL~a~~sVkQ~i~v~-~d~~k~---- 452 (629)
T KOG0336|consen 379 MLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPM-IVYVGSLDLVAVKSVKQNIIVT-TDSEKL---- 452 (629)
T ss_pred hhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCce-EEEecccceeeeeeeeeeEEec-ccHHHH----
Confidence 999 9999999999999999999999999999999999999998 7877765456667899999555 567788
Q ss_pred HHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 419 ~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
.++..|+..+. ...++||||.++-.|+.|+..|.-.||.+. .+|+.++++||.
T Consensus 453 ~~~~~f~~~ms--~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ks 513 (629)
T KOG0336|consen 453 EIVQFFVANMS--SNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKS 513 (629)
T ss_pred HHHHHHHHhcC--CCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhc
Confidence 66666666654 478999999999999999999999999876 788889999983
No 12
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=6.6e-47 Score=406.21 Aligned_cols=276 Identities=19% Similarity=0.277 Sum_probs=244.0
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.++++|..+||..|||| |.++||.+++|+|+|++|||| ||||+||+||++.++....... ...+|++||
T Consensus 137 l~~~l~~~l~~~g~~~pt~i-----Q~~aip~~l~G~dvI~~ApTG-SGKTlaylLP~l~~i~~~~~~~--~~~gp~~LI 208 (545)
T PTZ00110 137 FPDYILKSLKNAGFTEPTPI-----QVQGWPIALSGRDMIGIAETG-SGKTLAFLLPAIVHINAQPLLR--YGDGPIVLV 208 (545)
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHhcCCCEEEEeCCC-ChHHHHHHHHHHHHHHhccccc--CCCCcEEEE
Confidence 88999999999999999999 999999999999999999999 9999999999999987643221 125889999
Q ss_pred EeccHHHHHHHHHHHHhcc-cCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 262 LVSSQEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l~-~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
|+||||||.|++.++..+. ..++++.+++||.+...+...+.. +++|||+|||||++++.....+++++++|||||||
T Consensus 209 L~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~-~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd 287 (545)
T PTZ00110 209 LAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRR-GVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD 287 (545)
T ss_pred ECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHc-CCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH
Confidence 9999999999999999994 458999999999999999999988 89999999999999999999999999999999999
Q ss_pred ccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcC-CceEEEccCCcccccCCcEEEEEEcCCchhHHHH
Q 011963 341 SLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLG-SINRLSLNQSVASQSACIIQSVNVCASDEEKILK 416 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~-p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~ 416 (474)
+|++ ..++..|+..+++++|+++||||+|..+..+++.++.. |+ .+.++........++.|.++.+. ...|...
T Consensus 288 ~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v-~i~vg~~~l~~~~~i~q~~~~~~-~~~k~~~ 365 (545)
T PTZ00110 288 RMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPV-HVNVGSLDLTACHNIKQEVFVVE-EHEKRGK 365 (545)
T ss_pred hhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCE-EEEECCCccccCCCeeEEEEEEe-chhHHHH
Confidence 9999 78899999999999999999999999999999999864 55 77776543345568899998886 4668877
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 417 GIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 417 l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
|..+|..+... ..++||||+|+..|+.|+..|...|+++. .+|+.++++|++
T Consensus 366 L~~ll~~~~~~-----~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~ 425 (545)
T PTZ00110 366 LKMLLQRIMRD-----GDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKT 425 (545)
T ss_pred HHHHHHHhccc-----CCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhc
Confidence 77777776442 57999999999999999999999999875 688889999985
No 13
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-48 Score=370.87 Aligned_cols=267 Identities=18% Similarity=0.238 Sum_probs=247.9
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
|-+.++..+.++||+.|+|| |.++||.++.|+|+++.|..| +|||.||.+|+|+.+.... ...+++|
T Consensus 92 Lkr~LLmgIfe~G~ekPSPi-----QeesIPiaLtGrdiLaRaKNG-TGKT~a~~IP~Lekid~~~-------~~IQ~~i 158 (459)
T KOG0326|consen 92 LKRELLMGIFEKGFEKPSPI-----QEESIPIALTGRDILARAKNG-TGKTAAYCIPVLEKIDPKK-------NVIQAII 158 (459)
T ss_pred hhHHHHHHHHHhccCCCCCc-----cccccceeecchhhhhhccCC-CCCccceechhhhhcCccc-------cceeEEE
Confidence 88899999999999999999 999999999999999999999 9999999999998887643 6889999
Q ss_pred EeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
++||||||.|+.+.|..+ ++.|+.+...+||++....+-++.. +++++|+||||+++++..+--+++++.+||+||||
T Consensus 159 lVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~-~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD 237 (459)
T KOG0326|consen 159 LVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQ-TVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD 237 (459)
T ss_pred EeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecC-ceEEEEcCChhHHHHHhcccccchhceEEEechhh
Confidence 999999999999999999 5559999999999999999999988 89999999999999999999999999999999999
Q ss_pred ccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHH
Q 011963 341 SLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l 417 (474)
.|++ ..-++.++..+|+.+|+++||||+|..|..+..++|.+|. .|.+-. ..+..+|.|+|-++. +.+|...|
T Consensus 238 KlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy-~INLM~--eLtl~GvtQyYafV~-e~qKvhCL 313 (459)
T KOG0326|consen 238 KLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPY-EINLME--ELTLKGVTQYYAFVE-ERQKVHCL 313 (459)
T ss_pred hhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcc-eeehhh--hhhhcchhhheeeec-hhhhhhhH
Confidence 9999 8899999999999999999999999999999999999998 777755 477889999999996 67899777
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 418 IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 418 ~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
.-++..+. -.+.||||||.++++.||.-+.+.||+|- .+|+..+++|||
T Consensus 314 ntLfskLq-------INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~ 370 (459)
T KOG0326|consen 314 NTLFSKLQ-------INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRN 370 (459)
T ss_pred HHHHHHhc-------ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhc
Confidence 66666652 67899999999999999999999999986 788899999986
No 14
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6e-46 Score=388.68 Aligned_cols=275 Identities=15% Similarity=0.236 Sum_probs=240.1
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
|++.++++|..+||..|||| |.++||.++.|+|++++|||| ||||+||++|+++.+...+........++++||
T Consensus 15 l~~~l~~~l~~~g~~~pt~i-----Q~~aip~il~g~dvi~~ApTG-sGKTla~llp~l~~l~~~~~~~~~~~~~~~~li 88 (423)
T PRK04837 15 LHPQVVEALEKKGFHNCTPI-----QALALPLTLAGRDVAGQAQTG-TGKTMAFLTATFHYLLSHPAPEDRKVNQPRALI 88 (423)
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHhCCCcEEEECCCC-chHHHHHHHHHHHHHHhcccccccccCCceEEE
Confidence 89999999999999999999 999999999999999999999 999999999999999875443322235789999
Q ss_pred EeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
|+||||||.|+++++..+ ...++++..++||.+...+...+.. +++|||+||++|++++..+.+.++++++|||||||
T Consensus 89 l~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~-~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad 167 (423)
T PRK04837 89 MAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLES-GVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 167 (423)
T ss_pred ECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcC-CCCEEEECHHHHHHHHHcCCcccccccEEEEecHH
Confidence 999999999999999998 5559999999999999988888887 89999999999999999999999999999999999
Q ss_pred ccCC---hhHHHHHHhhCCC--CCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHH
Q 011963 341 SLSK---GDTLSLIRQSISG--KPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKIL 415 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~--~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~ 415 (474)
+|++ ..++..|+..++. .+|+++||||++..+..++..++.+|. .+.+... ......+.+.++.+. ..+|..
T Consensus 168 ~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~-~i~v~~~-~~~~~~i~~~~~~~~-~~~k~~ 244 (423)
T PRK04837 168 RMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPE-YVEVEPE-QKTGHRIKEELFYPS-NEEKMR 244 (423)
T ss_pred HHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCE-EEEEcCC-CcCCCceeEEEEeCC-HHHHHH
Confidence 9998 7888999999874 577899999999999999999999997 6666654 445567888777775 566774
Q ss_pred HHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 416 KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 416 ~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
. |..++.... ..++||||+++..|+.++..|...|+++. .+|..++++|++
T Consensus 245 ~----l~~ll~~~~---~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~ 303 (423)
T PRK04837 245 L----LQTLIEEEW---PDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTR 303 (423)
T ss_pred H----HHHHHHhcC---CCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHc
Confidence 4 444444444 68999999999999999999999999877 678899999975
No 15
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-47 Score=410.79 Aligned_cols=285 Identities=22% Similarity=0.373 Sum_probs=257.4
Q ss_pred cCCChhHHhh----hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhh
Q 011963 172 LDCPSKFLIL----CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARK 247 (474)
Q Consensus 172 ~~~p~~~~~~----l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~ 247 (474)
.+.|.+...| ++..|+..++++||..|||| |.+|||+|++|+|||++|.|| ||||++|+||++.++..++
T Consensus 358 ~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~I-----Q~qAiP~ImsGrdvIgvakTg-SGKT~af~LPmirhi~dQr 431 (997)
T KOG0334|consen 358 KECPKPVTSWTQCGLSSKILETLKKLGYEKPTPI-----QAQAIPAIMSGRDVIGVAKTG-SGKTLAFLLPMIRHIKDQR 431 (997)
T ss_pred CCCCcccchHhhCCchHHHHHHHHHhcCCCCcch-----hhhhcchhccCcceEEeeccC-CccchhhhcchhhhhhcCC
Confidence 3567777777 99999999999999999999 999999999999999999999 9999999999998888766
Q ss_pred hhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCC-
Q 011963 248 EKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA- 325 (474)
Q Consensus 248 ~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~- 325 (474)
.... ..||.+||++||||||.||+++++.| +.++++++++|||.....|+..+++ +++|+||||||.++++-.+.
T Consensus 432 ~~~~--gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkR-g~eIvV~tpGRmiD~l~~n~g 508 (997)
T KOG0334|consen 432 PLEE--GDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKR-GAEIVVCTPGRMIDILCANSG 508 (997)
T ss_pred Chhh--CCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhc-CCceEEeccchhhhhHhhcCC
Confidence 5433 36999999999999999999999999 5569999999999999999999999 69999999999999987644
Q ss_pred --CCCCCcceEEeccccccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCc
Q 011963 326 --IDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACI 400 (474)
Q Consensus 326 --~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i 400 (474)
.++.++.+||+||||+|++ .+++..|++.+++.+|+++||||+|..+..+++..|..|+ .|.++.. ......|
T Consensus 509 rvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pv-eiiv~~~-svV~k~V 586 (997)
T KOG0334|consen 509 RVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPV-EIIVGGR-SVVCKEV 586 (997)
T ss_pred ccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCe-eEEEccc-eeEeccc
Confidence 4455666999999999999 7788889999999999999999999999999999999887 6777654 5667889
Q ss_pred EEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhh
Q 011963 401 IQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIK 472 (474)
Q Consensus 401 ~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk 472 (474)
.|.+.+|+.+..|+..|..+|..... ..++||||.+++.|..|...|...||+|. .+|++++++||
T Consensus 587 ~q~v~V~~~e~eKf~kL~eLl~e~~e------~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK 660 (997)
T KOG0334|consen 587 TQVVRVCAIENEKFLKLLELLGERYE------DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFK 660 (997)
T ss_pred eEEEEEecCchHHHHHHHHHHHHHhh------cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHh
Confidence 99999999889999999888887753 46999999999999999999999999976 79999999999
Q ss_pred c
Q 011963 473 N 473 (474)
Q Consensus 473 ~ 473 (474)
+
T Consensus 661 ~ 661 (997)
T KOG0334|consen 661 N 661 (997)
T ss_pred c
Confidence 7
No 16
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-47 Score=384.87 Aligned_cols=283 Identities=17% Similarity=0.239 Sum_probs=248.5
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCC---CCCcE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFS---FTGPF 258 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~---~~~~~ 258 (474)
+.+.+..++...||..|||| |+.+||.+..|+|+++||+|| ||||.||++|++..++......... ...|+
T Consensus 81 l~~~l~~ni~~~~~~~ptpv-----Qk~sip~i~~Grdl~acAqTG-sGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~ 154 (482)
T KOG0335|consen 81 LGEALAGNIKRSGYTKPTPV-----QKYSIPIISGGRDLMACAQTG-SGKTAAFLIPIISYLLDEGPEDRGESGGGVYPR 154 (482)
T ss_pred hhHHHhhccccccccCCCcc-----eeeccceeecCCceEEEccCC-CcchHHHHHHHHHHHHhcCcccCcccCCCCCCc
Confidence 77888889999999999999 999999999999999999999 9999999999999999865322111 13699
Q ss_pred EEEEeccHHHHHHHHHHHHhcccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEec
Q 011963 259 LLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVD 337 (474)
Q Consensus 259 alil~PtreLa~Qi~~~~~~l~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViD 337 (474)
+|||+||||||.|||.+++++.+. +++++.+|||.+...|.+.+.+ +|||+|||||||.+++..+.+.|.+++|||||
T Consensus 155 ~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~-gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLD 233 (482)
T KOG0335|consen 155 ALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKR-GCDILVATPGRLKDLIERGKISLDNCKFLVLD 233 (482)
T ss_pred eEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhcc-CccEEEecCchhhhhhhcceeehhhCcEEEec
Confidence 999999999999999999999666 9999999999999999999999 89999999999999999999999999999999
Q ss_pred cccccCC----hhHHHHHHhhCC----CCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCC
Q 011963 338 RLDSLSK----GDTLSLIRQSIS----GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCAS 409 (474)
Q Consensus 338 Ead~ll~----~~~l~~Il~~l~----~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~ 409 (474)
|||+|+| .++|+.|+..+. .++|++|||||+|..+..++..++.+-...+.++.. ..+..++.|.+.+|.
T Consensus 234 EADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rv-g~~~~ni~q~i~~V~- 311 (482)
T KOG0335|consen 234 EADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRV-GSTSENITQKILFVN- 311 (482)
T ss_pred chHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeee-ccccccceeEeeeec-
Confidence 9999999 999999999885 479999999999999999999999874437777765 788899999999997
Q ss_pred chhHHHHHHHHHHHHhhccC--CCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 410 DEEKILKGIQVLDHAYGDHF--HSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 410 ~~~K~~~l~~lL~~ll~~~~--~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
+.+|...|+++|........ -.....++|||.|++.|..|+.+|...|+++. .+|+.++++|++
T Consensus 312 ~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~ 385 (482)
T KOG0335|consen 312 EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN 385 (482)
T ss_pred chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc
Confidence 56677777777765442211 01134899999999999999999999999986 788899999986
No 17
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-46 Score=370.97 Aligned_cols=278 Identities=19% Similarity=0.214 Sum_probs=246.2
Q ss_pred hHHhh-hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCC
Q 011963 177 KFLIL-CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFT 255 (474)
Q Consensus 177 ~~~~~-l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~ 255 (474)
.|..| |.+.|++++.+.||..||-| |..|||.++.|+|+++.|.|| ||||+||+||+++.|+..+... ....
T Consensus 20 tFe~~gLD~RllkAi~~lG~ekpTlI-----Qs~aIplaLEgKDvvarArTG-SGKT~AYliPllqkll~~k~t~-~~e~ 92 (569)
T KOG0346|consen 20 TFEEFGLDSRLLKAITKLGWEKPTLI-----QSSAIPLALEGKDVVARARTG-SGKTAAYLIPLLQKLLAEKKTN-DGEQ 92 (569)
T ss_pred cHHHhCCCHHHHHHHHHhCcCCcchh-----hhcccchhhcCcceeeeeccC-CCchHHHHHHHHHHHHHhhhcc-cccc
Confidence 44444 99999999999999999999 999999999999999999999 9999999999999999876543 3457
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhc-cc--CCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCC-CCCCCc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPL-KA--FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA-IDVSGV 331 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l-~~--~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~-~~l~~l 331 (474)
+|.++||+||||||.|+|.++..| .. ..++++-+...++.......|.. .|||||+||++|+.++..+. ..+..|
T Consensus 93 ~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d-~pdIvV~TP~~ll~~~~~~~~~~~~~l 171 (569)
T KOG0346|consen 93 GPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMD-LPDIVVATPAKLLRHLAAGVLEYLDSL 171 (569)
T ss_pred cceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHcc-CCCeEEeChHHHHHHHhhccchhhhhe
Confidence 999999999999999999999998 22 36888888877777666677776 89999999999999999876 778999
Q ss_pred ceEEeccccccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcC
Q 011963 332 SLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCA 408 (474)
Q Consensus 332 ~~lViDEad~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~ 408 (474)
++||+||||.|+. .++|..|...+|+..|.+++|||++.+|..+-..++++|+ .+.+....-..+..+.|+++.|.
T Consensus 172 ~~LVvDEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPv-iLkl~e~el~~~dqL~Qy~v~cs 250 (569)
T KOG0346|consen 172 SFLVVDEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPV-ILKLTEGELPNPDQLTQYQVKCS 250 (569)
T ss_pred eeEEechhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCe-EEEeccccCCCcccceEEEEEec
Confidence 9999999999999 9999999999999999999999999999999999999998 78887765567789999999996
Q ss_pred CchhHHHHHHHHHH-HHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHh
Q 011963 409 SDEEKILKGIQVLD-HAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHI 471 (474)
Q Consensus 409 ~~~~K~~~l~~lL~-~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~F 471 (474)
+.+|+..++.+|. .++ .+++|||+||+++|-+|--+|...|++.+ .-|..+|+.|
T Consensus 251 -e~DKflllyallKL~LI-------~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QF 314 (569)
T KOG0346|consen 251 -EEDKFLLLYALLKLRLI-------RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQF 314 (569)
T ss_pred -cchhHHHHHHHHHHHHh-------cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHh
Confidence 7889977666654 222 67999999999999999999999999987 4566788887
No 18
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.2e-47 Score=358.28 Aligned_cols=269 Identities=13% Similarity=0.186 Sum_probs=248.7
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
|.+++++++...||+.|+.| |..|||+++.|+||+++|.+| +|||.+|.+.+++.+.-.. +..++||
T Consensus 34 l~edlLrgiY~yGfekPS~I-----QqrAi~~IlkGrdViaQaqSG-TGKTa~~si~vlq~~d~~~-------r~tQ~li 100 (400)
T KOG0328|consen 34 LKEDLLRGIYAYGFEKPSAI-----QQRAIPQILKGRDVIAQAQSG-TGKTATFSISVLQSLDISV-------RETQALI 100 (400)
T ss_pred chHHHHHHHHHhccCCchHH-----HhhhhhhhhcccceEEEecCC-CCceEEEEeeeeeeccccc-------ceeeEEE
Confidence 99999999999999999999 999999999999999999999 9999999999997765532 5689999
Q ss_pred EeccHHHHHHHHHHHHhcc-cCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 262 LVSSQEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l~-~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
|+||||||.|+..++..|. +.++.+..+.||.+..+.+..+.- |++++.+||||++++++++.+....+++||+||||
T Consensus 101 lsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~-G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaD 179 (400)
T KOG0328|consen 101 LSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDY-GQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEAD 179 (400)
T ss_pred ecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcc-cceEeeCCCchHHHHHHhccccccceeEEEeccHH
Confidence 9999999999999999994 459999999999999999999986 99999999999999999999999999999999999
Q ss_pred ccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHH
Q 011963 341 SLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l 417 (474)
.||+ .+++-.|++.+|+..|++++|||+|.++.++...|+.+|+ .|-+.+. ..+.++|.|+|+.++.++.|+..|
T Consensus 180 emL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpv-rilvkrd-eltlEgIKqf~v~ve~EewKfdtL 257 (400)
T KOG0328|consen 180 EMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPV-RILVKRD-ELTLEGIKQFFVAVEKEEWKFDTL 257 (400)
T ss_pred HHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCce-eEEEecC-CCchhhhhhheeeechhhhhHhHH
Confidence 9999 8999999999999999999999999999999999999998 8877766 678889999999999888899666
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 418 IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 418 ~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
.++...+ . -.+.+|||||+..+++|.+-|+..++.|+ -+|+.++++||.
T Consensus 258 cdLYd~L----t---ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRs 314 (400)
T KOG0328|consen 258 CDLYDTL----T---ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRS 314 (400)
T ss_pred HHHhhhh----e---hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhc
Confidence 6655554 2 67999999999999999999999999887 789999999984
No 19
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-46 Score=361.64 Aligned_cols=272 Identities=17% Similarity=0.168 Sum_probs=240.8
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
|++++.+.|+.+|+..|||| |..|||.||.|+|+|++|.|| ||||+||.||++++|..++ .|.++||
T Consensus 14 l~~Wlve~l~~l~i~~pTpi-----Q~~cIpkILeGrdcig~AkTG-sGKT~AFaLPil~rLsedP-------~giFalv 80 (442)
T KOG0340|consen 14 LSPWLVEQLKALGIKKPTPI-----QQACIPKILEGRDCIGCAKTG-SGKTAAFALPILNRLSEDP-------YGIFALV 80 (442)
T ss_pred ccHHHHHHHHHhcCCCCCch-----HhhhhHHHhcccccccccccC-CCcchhhhHHHHHhhccCC-------CcceEEE
Confidence 89999999999999999999 999999999999999999999 9999999999999998875 7999999
Q ss_pred EeccHHHHHHHHHHHHhccc-CCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcC----CCCCCCcceEEe
Q 011963 262 LVSSQEKAAKVRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK----AIDVSGVSLLVV 336 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l~~-~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~----~~~l~~l~~lVi 336 (474)
++||||||.|+.++|..++. .++++.+++||++.-.|...|.. +|||||+|||||.+|+... ...+++++|||+
T Consensus 81 lTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~-rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVl 159 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSD-RPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVL 159 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhccc-CCCeEecCccccccccccCCccchhhhhceeeEEe
Confidence 99999999999999999944 59999999999999999999998 8999999999999999875 245889999999
Q ss_pred ccccccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCce-EEEccCCcccccCCcEEEEEEcCCchh
Q 011963 337 DRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSIN-RLSLNQSVASQSACIIQSVNVCASDEE 412 (474)
Q Consensus 337 DEad~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~-~v~v~~~~~~~~~~i~q~~~~~~~~~~ 412 (474)
||||+|++ .+.+..|++.+|..+|+++||||++..+.++..--...+.. .+.+.+. .++++.+.|.|+.|+ ...
T Consensus 160 DEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~-vstvetL~q~yI~~~-~~v 237 (442)
T KOG0340|consen 160 DEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDG-VSTVETLYQGYILVS-IDV 237 (442)
T ss_pred cchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCC-CCchhhhhhheeecc-hhh
Confidence 99999999 88999999999999999999999998777765554444321 3333333 688899999999997 677
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 413 KILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 413 K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
|..+|+.+|..+-++ . ...++||+|++.+|+.|+..|...++.+. .+|-+.++.||.
T Consensus 238 kdaYLv~~Lr~~~~~-~---~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs 302 (442)
T KOG0340|consen 238 KDAYLVHLLRDFENK-E---NGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRS 302 (442)
T ss_pred hHHHHHHHHhhhhhc-c---CceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhh
Confidence 999999999988665 3 68999999999999999999999988876 556678999973
No 20
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=8.4e-45 Score=383.96 Aligned_cols=267 Identities=16% Similarity=0.244 Sum_probs=237.8
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
|++.++++|..+||..|||| |.+|||.++.|+|++++|||| ||||+||++|+++.+.... ..+++||
T Consensus 11 l~~~l~~~l~~~g~~~~t~i-----Q~~ai~~~l~g~dvi~~a~TG-sGKT~a~~lpil~~l~~~~-------~~~~~li 77 (460)
T PRK11776 11 LPPALLANLNELGYTEMTPI-----QAQSLPAILAGKDVIAQAKTG-SGKTAAFGLGLLQKLDVKR-------FRVQALV 77 (460)
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHhcCCCEEEECCCC-CcHHHHHHHHHHHHhhhcc-------CCceEEE
Confidence 88999999999999999999 999999999999999999999 9999999999999885421 3678999
Q ss_pred EeccHHHHHHHHHHHHhc-ccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEa 339 (474)
|+||||||.|+++.++.+ ... ++++..++||.+...+...+.. +++|+|+|||+|.+++.++.+.++++++||||||
T Consensus 78 l~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~-~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEa 156 (460)
T PRK11776 78 LCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEH-GAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEA 156 (460)
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcC-CCCEEEEChHHHHHHHHcCCccHHHCCEEEEECH
Confidence 999999999999999998 334 7999999999999999999987 8999999999999999999999999999999999
Q ss_pred cccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHH
Q 011963 340 DSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILK 416 (474)
Q Consensus 340 d~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~ 416 (474)
|+|++ ...+..|+..++..+|+++||||+|+.+..++..++.+|. .+.+... .....+.|.++.++. ..|...
T Consensus 157 d~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~-~i~~~~~--~~~~~i~~~~~~~~~-~~k~~~ 232 (460)
T PRK11776 157 DRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPV-EVKVEST--HDLPAIEQRFYEVSP-DERLPA 232 (460)
T ss_pred HHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCE-EEEECcC--CCCCCeeEEEEEeCc-HHHHHH
Confidence 99998 8889999999999999999999999999999999999997 6666543 345569999998874 457754
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 417 GIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 417 l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
+.. ++.... ..++||||+|+..|+.++..|...|+.+. .+|+.+++.|++
T Consensus 233 l~~----ll~~~~---~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~ 290 (460)
T PRK11776 233 LQR----LLLHHQ---PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFAN 290 (460)
T ss_pred HHH----HHHhcC---CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 444 444444 67899999999999999999999999886 688899999985
No 21
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=8.7e-45 Score=388.29 Aligned_cols=284 Identities=18% Similarity=0.266 Sum_probs=242.1
Q ss_pred CChhHHhh----hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhh
Q 011963 174 CPSKFLIL----CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEK 249 (474)
Q Consensus 174 ~p~~~~~~----l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~ 249 (474)
.|.++..| |++.++++|..+||..|||| |.++||.++.|+|+|++|||| ||||++|++|++.++......
T Consensus 116 ~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpi-----Q~~aip~il~g~dviv~ApTG-SGKTlayllPil~~l~~~~~~ 189 (518)
T PLN00206 116 VPPPILSFSSCGLPPKLLLNLETAGYEFPTPI-----QMQAIPAALSGRSLLVSADTG-SGKTASFLVPIISRCCTIRSG 189 (518)
T ss_pred CCchhcCHHhCCCCHHHHHHHHHcCCCCCCHH-----HHHHHHHHhcCCCEEEEecCC-CCccHHHHHHHHHHHHhhccc
Confidence 34444444 89999999999999999999 999999999999999999999 999999999999998764322
Q ss_pred cCCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCC
Q 011963 250 EGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDV 328 (474)
Q Consensus 250 ~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l 328 (474)
......++++|||+||||||.|++++++.+ ...++++..++||.....+...+.. +++|||+|||+|++++....+.+
T Consensus 190 ~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~-~~~IiV~TPgrL~~~l~~~~~~l 268 (518)
T PLN00206 190 HPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQ-GVELIVGTPGRLIDLLSKHDIEL 268 (518)
T ss_pred cccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcC-CCCEEEECHHHHHHHHHcCCccc
Confidence 222236899999999999999999999998 5558999999999999999888887 89999999999999999999999
Q ss_pred CCcceEEeccccccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEE
Q 011963 329 SGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVN 405 (474)
Q Consensus 329 ~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~ 405 (474)
+++.+|||||||+|++ ..++..|+..++ ++|+++||||+++.+..++..++.++. .|.++.. ......+.|.++
T Consensus 269 ~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~-~i~~~~~-~~~~~~v~q~~~ 345 (518)
T PLN00206 269 DNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDII-LISIGNP-NRPNKAVKQLAI 345 (518)
T ss_pred hheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCE-EEEeCCC-CCCCcceeEEEE
Confidence 9999999999999998 778888998885 689999999999999999999998887 7777654 455667889888
Q ss_pred EcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhh-CCCccc--------chHHHHHHHhhc
Q 011963 406 VCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKC-KGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 406 ~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~-~gi~v~--------~~r~~~i~~Fk~ 473 (474)
.+.. ..|...|.++|.... +. .+++||||+|+..|+.|+..|.. .|+.+. .+|+.+++.|++
T Consensus 346 ~~~~-~~k~~~l~~~l~~~~--~~---~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~ 416 (518)
T PLN00206 346 WVET-KQKKQKLFDILKSKQ--HF---KPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV 416 (518)
T ss_pred eccc-hhHHHHHHHHHHhhc--cc---CCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC
Confidence 8874 556666666665432 12 46899999999999999999975 577764 688899999985
No 22
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-45 Score=372.60 Aligned_cols=262 Identities=17% Similarity=0.187 Sum_probs=229.3
Q ss_pred hHHHHHHHHHh-CCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEE
Q 011963 182 CLNAIENAMRH-DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLL 260 (474)
Q Consensus 182 l~~~i~~~l~~-~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~al 260 (474)
|++.+...|.. |++..||.| |.++||.++.|+|++|.|+|| |||||||+||+++.|........ ...|+.||
T Consensus 143 L~~~lv~~L~~~m~i~~pTsV-----Qkq~IP~lL~grD~lV~aQTG-SGKTLAYllPiVq~Lq~m~~ki~-Rs~G~~AL 215 (708)
T KOG0348|consen 143 LHPHLVSHLNTKMKISAPTSV-----QKQAIPVLLEGRDALVRAQTG-SGKTLAYLLPIVQSLQAMEPKIQ-RSDGPYAL 215 (708)
T ss_pred CCHHHHHHHHHHhccCccchH-----hhcchhhhhcCcceEEEcCCC-CcccHHHHHHHHHHHHhcCcccc-ccCCceEE
Confidence 77777777754 599999999 999999999999999999999 99999999999999998765544 35799999
Q ss_pred EEeccHHHHHHHHHHHHhc-ccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHc-CCCCCCCcceEEec
Q 011963 261 FLVSSQEKAAKVRSVCKPL-KAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL-KAIDVSGVSLLVVD 337 (474)
Q Consensus 261 il~PtreLa~Qi~~~~~~l-~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~-~~~~l~~l~~lViD 337 (474)
||+||||||.|+|+.+++| ..+ .|-.+.++||.....+..+|++ |++|||+|||||+|||.+ ..+.++.|+|||+|
T Consensus 216 VivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRK-GiNILIgTPGRLvDHLknT~~i~~s~LRwlVlD 294 (708)
T KOG0348|consen 216 VIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRK-GINILIGTPGRLVDHLKNTKSIKFSRLRWLVLD 294 (708)
T ss_pred EEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhc-CceEEEcCchHHHHHHhccchheeeeeeEEEec
Confidence 9999999999999999998 555 6777889999999999999999 899999999999999998 78999999999999
Q ss_pred cccccCC---hhHHHHHHhhC-------------CCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCC---------
Q 011963 338 RLDSLSK---GDTLSLIRQSI-------------SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQS--------- 392 (474)
Q Consensus 338 Ead~ll~---~~~l~~Il~~l-------------~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~--------- 392 (474)
|||+|++ ..++..|++.+ |+..|.+++|||++..|..++..-|.+|+ +|..+..
T Consensus 295 EaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv-~I~ld~s~~~~~p~~~ 373 (708)
T KOG0348|consen 295 EADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPV-YISLDKSHSQLNPKDK 373 (708)
T ss_pred chhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCce-eeeccchhhhcCcchh
Confidence 9999999 88888888877 23578999999999999999999999998 7773211
Q ss_pred ---------------cccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhC
Q 011963 393 ---------------VASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK 456 (474)
Q Consensus 393 ---------------~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~ 456 (474)
....++++.|.|.+|+. .-++..|..+|....+... ..++|||+++++.++..|+.|...
T Consensus 374 a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPp-KLRLV~Laa~L~~~~k~~~---~qk~iVF~S~~d~VeFHy~lf~~~ 448 (708)
T KOG0348|consen 374 AVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPP-KLRLVALAALLLNKVKFEE---KQKMIVFFSCSDSVEFHYSLFSEA 448 (708)
T ss_pred hhhhcCCcccccccccccCcHHhhhceEecCC-chhHHHHHHHHHHHhhhhh---hceeEEEEechhHHHHHHHHHHhh
Confidence 02456788999999985 4477788888888877776 789999999999999999999764
No 23
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.2e-44 Score=382.09 Aligned_cols=274 Identities=18% Similarity=0.266 Sum_probs=240.4
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
|++.++++|.++||..|||| |.++||.++.|+|+|++|||| ||||+||++|+++.+........ ....+++||
T Consensus 8 l~~~l~~~l~~~g~~~pt~i-----Q~~ai~~il~g~dvlv~apTG-sGKTla~~lpil~~l~~~~~~~~-~~~~~~aLi 80 (456)
T PRK10590 8 LSPDILRAVAEQGYREPTPI-----QQQAIPAVLEGRDLMASAQTG-TGKTAGFTLPLLQHLITRQPHAK-GRRPVRALI 80 (456)
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHhCCCCEEEECCCC-CcHHHHHHHHHHHHhhhcccccc-cCCCceEEE
Confidence 88999999999999999999 999999999999999999999 99999999999999876432111 124578999
Q ss_pred EeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
|+||||||.|+++.+..+ ...++++..++||.+...+...+.. +++|||+||++|++++....+.++++++|||||||
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah 159 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRG-GVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD 159 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcC-CCcEEEEChHHHHHHHHcCCcccccceEEEeecHH
Confidence 999999999999999998 5559999999999999998888887 89999999999999999998999999999999999
Q ss_pred ccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHH
Q 011963 341 SLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l 417 (474)
+|++ ...+..|+..++..+|+++||||++..+..++..++.+|. .+.+... ......+.+++..++ ...+.
T Consensus 160 ~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~-~i~~~~~-~~~~~~i~~~~~~~~-~~~k~--- 233 (456)
T PRK10590 160 RMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPL-EIEVARR-NTASEQVTQHVHFVD-KKRKR--- 233 (456)
T ss_pred HHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCe-EEEEecc-cccccceeEEEEEcC-HHHHH---
Confidence 9998 6888999999999999999999999999999999999997 6666544 455667889998886 45566
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 418 IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 418 ~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
.+|..++.... ..++||||+|+..|+.|+..|...|+++. .+|..++++|++
T Consensus 234 -~~l~~l~~~~~---~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~ 293 (456)
T PRK10590 234 -ELLSQMIGKGN---WQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS 293 (456)
T ss_pred -HHHHHHHHcCC---CCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 45556665555 78999999999999999999999999876 568889999985
No 24
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-44 Score=390.11 Aligned_cols=275 Identities=16% Similarity=0.216 Sum_probs=237.1
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
|++.++++|..+||..|||| |.++||.++.|+|++++|||| ||||+||++|+++.+.............+++||
T Consensus 16 l~~~l~~~L~~~g~~~ptpi-----Q~~~ip~~l~G~Dvi~~ApTG-SGKTlafllpil~~l~~~~~~~~~~~~~~raLI 89 (572)
T PRK04537 16 LHPALLAGLESAGFTRCTPI-----QALTLPVALPGGDVAGQAQTG-TGKTLAFLVAVMNRLLSRPALADRKPEDPRALI 89 (572)
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHhCCCCEEEEcCCC-CcHHHHHHHHHHHHHHhcccccccccCCceEEE
Confidence 89999999999999999999 999999999999999999999 999999999999999764322121123689999
Q ss_pred EeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcC-CCCCCCcceEEeccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK-AIDVSGVSLLVVDRL 339 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~-~~~l~~l~~lViDEa 339 (474)
|+||||||.|++..+..| ...++++..++||.+...+...+.. +++|||+||++|++++.+. .+.+..+++||||||
T Consensus 90 l~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~-~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 90 LAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQ-GVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhC-CCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 999999999999999998 5569999999999999998888887 8999999999999999874 578999999999999
Q ss_pred cccCC---hhHHHHHHhhCCC--CCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHH
Q 011963 340 DSLSK---GDTLSLIRQSISG--KPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKI 414 (474)
Q Consensus 340 d~ll~---~~~l~~Il~~l~~--~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~ 414 (474)
|+|++ ..++..|+..++. .+|+++||||++..+..++..++.+|. .+.+... ......+.|.++.+. ...|.
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~-~i~v~~~-~~~~~~i~q~~~~~~-~~~k~ 245 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPE-KLVVETE-TITAARVRQRIYFPA-DEEKQ 245 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCc-EEEeccc-cccccceeEEEEecC-HHHHH
Confidence 99998 7888999999986 789999999999999999999999886 5555433 345667888888886 45677
Q ss_pred HHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 415 LKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 415 ~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
..| ..++.... ..++||||||+..|+.|+..|...|+.+. .+|..+++.|++
T Consensus 246 ~~L----~~ll~~~~---~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~ 305 (572)
T PRK04537 246 TLL----LGLLSRSE---GARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK 305 (572)
T ss_pred HHH----HHHHhccc---CCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHc
Confidence 444 44444444 67999999999999999999999999887 568899999985
No 25
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.6e-44 Score=391.80 Aligned_cols=268 Identities=20% Similarity=0.247 Sum_probs=239.2
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
|++.++++|.++||..|||| |.++||.++.|+|+|++|||| ||||+||++|+++.+.... .++++||
T Consensus 13 L~~~ll~al~~~G~~~ptpi-----Q~~ai~~ll~g~dvl~~ApTG-sGKT~af~lpll~~l~~~~-------~~~~~LI 79 (629)
T PRK11634 13 LKAPILEALNDLGYEKPSPI-----QAECIPHLLNGRDVLGMAQTG-SGKTAAFSLPLLHNLDPEL-------KAPQILV 79 (629)
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHHcCCCEEEEcCCC-CcHHHHHHHHHHHHhhhcc-------CCCeEEE
Confidence 89999999999999999999 999999999999999999999 9999999999999886431 4689999
Q ss_pred EeccHHHHHHHHHHHHhc-ccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEa 339 (474)
|+||||||.|++..+..+ ..+ ++.++.++||.++..+...+.. +++|||+||++|++++..+.+++++|++||||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~-~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEA 158 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ-GPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEA 158 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcC-CCCEEEECHHHHHHHHHcCCcchhhceEEEeccH
Confidence 999999999999999998 444 8999999999999999998887 8999999999999999999999999999999999
Q ss_pred cccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHH
Q 011963 340 DSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILK 416 (474)
Q Consensus 340 d~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~ 416 (474)
|+|++ .+++..|+..+|..+|+++||||+|..+..++..|+.+|. .|.+... ..+...+.|.++.+. ...|...
T Consensus 159 d~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~-~i~i~~~-~~~~~~i~q~~~~v~-~~~k~~~ 235 (629)
T PRK11634 159 DEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQ-EVRIQSS-VTTRPDISQSYWTVW-GMRKNEA 235 (629)
T ss_pred HHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCe-EEEccCc-cccCCceEEEEEEec-hhhHHHH
Confidence 99998 7889999999999999999999999999999999999997 6766654 456678889888886 4567754
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 417 GIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 417 l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
|..+| .... ..++||||+|+..|+.|+..|...||.+. .+|+.+++.|++
T Consensus 236 L~~~L----~~~~---~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~ 293 (629)
T PRK11634 236 LVRFL----EAED---FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 (629)
T ss_pred HHHHH----HhcC---CCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC
Confidence 44444 4443 67999999999999999999999999875 678889999985
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=8e-44 Score=373.89 Aligned_cols=273 Identities=17% Similarity=0.224 Sum_probs=240.9
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.++++|..+||..|||| |.++||.++.|+|++++|||| ||||+||++|+++.+....... ...+++||
T Consensus 8 l~~~l~~~l~~~g~~~p~~i-----Q~~ai~~~~~g~d~l~~apTG-sGKT~~~~lp~l~~l~~~~~~~---~~~~~~li 78 (434)
T PRK11192 8 LDESLLEALQDKGYTRPTAI-----QAEAIPPALDGRDVLGSAPTG-TGKTAAFLLPALQHLLDFPRRK---SGPPRILI 78 (434)
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHhCCCCEEEECCCC-ChHHHHHHHHHHHHHhhccccC---CCCceEEE
Confidence 78899999999999999999 999999999999999999999 9999999999999987643221 14679999
Q ss_pred EeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
|+||+|||.|+++.+..+ ...++++..++||.....+...+.. +++|||+|||+|++++....+++.++++|||||||
T Consensus 79 l~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~-~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah 157 (434)
T PRK11192 79 LTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSE-NQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD 157 (434)
T ss_pred ECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcC-CCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH
Confidence 999999999999999998 4559999999999999988888877 89999999999999999999999999999999999
Q ss_pred ccCC---hhHHHHHHhhCCCCCcEEEEEccCCcc-HHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHH
Q 011963 341 SLSK---GDTLSLIRQSISGKPHTVVFNDCLTYT-SVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILK 416 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~-v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~ 416 (474)
+|++ ...+..|...++...|+++||||++.. +..++..++.+|. .+.+... .....++.|+++.++....|.
T Consensus 158 ~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~-~i~~~~~-~~~~~~i~~~~~~~~~~~~k~-- 233 (434)
T PRK11192 158 RMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPV-EVEAEPS-RRERKKIHQWYYRADDLEHKT-- 233 (434)
T ss_pred HHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCE-EEEecCC-cccccCceEEEEEeCCHHHHH--
Confidence 9998 788899999999999999999999864 8888999998887 6766654 456678999999887666677
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 417 GIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 417 l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
.+|..++.... ..++||||+|+..|+.++..|...|+++. .+|..+++.|++
T Consensus 234 --~~l~~l~~~~~---~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~ 293 (434)
T PRK11192 234 --ALLCHLLKQPE---VTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTD 293 (434)
T ss_pred --HHHHHHHhcCC---CCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhC
Confidence 55666665544 68999999999999999999999999876 678889999985
No 27
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.1e-43 Score=373.33 Aligned_cols=276 Identities=14% Similarity=0.196 Sum_probs=238.6
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
|++.++++|.++||..|||+ |.++||+++.|+|+|++|||| ||||+||++|+++.+.............+++||
T Consensus 94 l~~~l~~~l~~~g~~~~~~i-----Q~~ai~~~~~G~dvi~~apTG-SGKTlay~lpil~~l~~~~~~~~~~~~~~~aLi 167 (475)
T PRK01297 94 LAPELMHAIHDLGFPYCTPI-----QAQVLGYTLAGHDAIGRAQTG-TGKTAAFLISIINQLLQTPPPKERYMGEPRALI 167 (475)
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHhCCCCEEEECCCC-ChHHHHHHHHHHHHHHhcCcccccccCCceEEE
Confidence 99999999999999999999 999999999999999999999 999999999999999875432221123689999
Q ss_pred EeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
|+||+|||.|+++.++.| ...++.+..++||.+...+...+....++|||+||++|++++..+.+.++++++|||||||
T Consensus 168 l~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah 247 (475)
T PRK01297 168 IAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEAD 247 (475)
T ss_pred EeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHH
Confidence 999999999999999998 4559999999999999888888876679999999999999999988999999999999999
Q ss_pred ccCC---hhHHHHHHhhCCC--CCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHH
Q 011963 341 SLSK---GDTLSLIRQSISG--KPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKIL 415 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~--~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~ 415 (474)
++++ ...+..|+..++. .+|+++||||++..+..++..++.+|. .+.+... .....++.++++.+. ..++.
T Consensus 248 ~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~-~v~~~~~-~~~~~~~~~~~~~~~-~~~k~- 323 (475)
T PRK01297 248 RMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPA-IVEIEPE-NVASDTVEQHVYAVA-GSDKY- 323 (475)
T ss_pred HHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCE-EEEeccC-cCCCCcccEEEEEec-chhHH-
Confidence 9998 6788999998864 679999999999999999999999987 6666544 455567888888886 45577
Q ss_pred HHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 416 KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 416 ~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
.+|..++.... ..++||||+++..|+.++..|...|+.+. .+|..++++|++
T Consensus 324 ---~~l~~ll~~~~---~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~ 383 (475)
T PRK01297 324 ---KLLYNLVTQNP---WERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFRE 383 (475)
T ss_pred ---HHHHHHHHhcC---CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhC
Confidence 44455555544 67999999999999999999999998875 567789999975
No 28
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=4.4e-46 Score=363.11 Aligned_cols=287 Identities=16% Similarity=0.273 Sum_probs=252.2
Q ss_pred ccccCCChhHHhh----hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHH
Q 011963 169 CEKLDCPSKFLIL----CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSI 244 (474)
Q Consensus 169 ~~~~~~p~~~~~~----l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~ 244 (474)
++..+.|.++..| ++..+++.|++.|+.+|||| |.+.||.+++|||.|++|-|| ||||+.|.||++...+
T Consensus 160 veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpI-----QvQGlPvvLsGRDmIGIAfTG-SGKTlvFvLP~imf~L 233 (610)
T KOG0341|consen 160 VEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPI-----QVQGLPVVLSGRDMIGIAFTG-SGKTLVFVLPVIMFAL 233 (610)
T ss_pred eeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCce-----eecCcceEeecCceeeEEeec-CCceEEEeHHHHHHHH
Confidence 3445566666555 89999999999999999999 999999999999999999999 9999999999998776
Q ss_pred Hhhhh-cCCCCCCcEEEEEeccHHHHHHHHHHHHhc-c-----cC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHH
Q 011963 245 ARKEK-EGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-K-----AF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER 316 (474)
Q Consensus 245 ~~~~~-~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~-----~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~r 316 (474)
.+.-. .-....||.+|||||+||||.|+++.+..+ . ++ .++...++||.+...|...++. |++|+|+||||
T Consensus 234 eqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~-GvHivVATPGR 312 (610)
T KOG0341|consen 234 EQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRR-GVHIVVATPGR 312 (610)
T ss_pred HHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhc-CeeEEEcCcch
Confidence 64321 112236999999999999999999988775 2 22 4789999999999999999999 89999999999
Q ss_pred HHHHHHcCCCCCCCcceEEeccccccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCc
Q 011963 317 LLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSV 393 (474)
Q Consensus 317 L~~ll~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~ 393 (474)
|.++|..+.++|+-++||++||||+|+| .++++.|+..+...+|+++||||+|..+..|++..|-.|+ .|.|++.
T Consensus 313 L~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPv-tvNVGRA- 390 (610)
T KOG0341|consen 313 LMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPV-TVNVGRA- 390 (610)
T ss_pred HHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccce-EEecccc-
Confidence 9999999999999999999999999999 9999999999999999999999999999999999999998 9999987
Q ss_pred ccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHH
Q 011963 394 ASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSN 465 (474)
Q Consensus 394 ~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~ 465 (474)
.+.+.++.|.+.++. .+.|+.+|++.|... .+++||||....+++.++++|--.|+.+. .+|+
T Consensus 391 GAAsldViQevEyVk-qEaKiVylLeCLQKT--------~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~ 461 (610)
T KOG0341|consen 391 GAASLDVIQEVEYVK-QEAKIVYLLECLQKT--------SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRH 461 (610)
T ss_pred cccchhHHHHHHHHH-hhhhhhhHHHHhccC--------CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHH
Confidence 677778889888886 455776555555442 68999999999999999999999999876 6888
Q ss_pred HHHHHhhc
Q 011963 466 CIVSHIKN 473 (474)
Q Consensus 466 ~~i~~Fk~ 473 (474)
..|+.||.
T Consensus 462 ~ai~afr~ 469 (610)
T KOG0341|consen 462 YAIEAFRA 469 (610)
T ss_pred HHHHHHhc
Confidence 89999973
No 29
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-41 Score=334.55 Aligned_cols=258 Identities=19% Similarity=0.214 Sum_probs=233.7
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
|+..+++++...||..|||| |+.+||.+|+|+|+++.|-|| ||||.||++|+++.+.... ..|.+++|
T Consensus 28 L~~~v~raI~kkg~~~ptpi-----qRKTipliLe~~dvv~martg-sgktaaf~ipm~e~Lk~~s------~~g~Rali 95 (529)
T KOG0337|consen 28 LDYKVLRAIHKKGFNTPTPI-----QRKTIPLILEGRDVVGMARTG-SGKTAAFLIPMIEKLKSHS------QTGLRALI 95 (529)
T ss_pred CCHHHHHHHHHhhcCCCCch-----hcccccceeeccccceeeecC-CcchhhHHHHHHHHHhhcc------ccccceee
Confidence 88899999999999999999 999999999999999999999 9999999999999998865 14889999
Q ss_pred EeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
++||||||.|+.++++.+ ...++++++++||....+|+..|.. +||||+|||||++.+...-.+.|+.|+|+|+||||
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~-npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad 174 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNE-NPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD 174 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhcc-CCCEEEecCceeeeeehheeccccceeeeeehhhh
Confidence 999999999999999999 4459999999999999999999988 89999999999998877777999999999999999
Q ss_pred ccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHH
Q 011963 341 SLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l 417 (474)
+|++ .+++..|+..+|..+|+++||||+|..+..+++.-+.+|. .|.++-. ....+.+...+..|. ..+|..+|
T Consensus 175 rlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~-lVRldve-tkise~lk~~f~~~~-~a~K~aaL 251 (529)
T KOG0337|consen 175 RLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPV-LVRLDVE-TKISELLKVRFFRVR-KAEKEAAL 251 (529)
T ss_pred HHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCc-eEEeehh-hhcchhhhhheeeec-cHHHHHHH
Confidence 9999 7999999999999999999999999999999999999997 6665543 566778888899997 56788766
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc
Q 011963 418 IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS 461 (474)
Q Consensus 418 ~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~ 461 (474)
+.++...+. ..+++|||.|...|+.+...|+..|+.+.
T Consensus 252 l~il~~~~~------~~~t~vf~~tk~hve~~~~ll~~~g~~~s 289 (529)
T KOG0337|consen 252 LSILGGRIK------DKQTIVFVATKHHVEYVRGLLRDFGGEGS 289 (529)
T ss_pred HHHHhcccc------ccceeEEecccchHHHHHHHHHhcCCCcc
Confidence 666665432 45899999999999999999999999876
No 30
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=3.3e-41 Score=345.92 Aligned_cols=279 Identities=18% Similarity=0.241 Sum_probs=243.1
Q ss_pred CChhHHhh-hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCC
Q 011963 174 CPSKFLIL-CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGF 252 (474)
Q Consensus 174 ~p~~~~~~-l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~ 252 (474)
.+..|..+ |...++..|+..||..|||| |..|||.++.+-|+||+|..| +|||+.|.+.+++.+....
T Consensus 23 ~~~~fe~l~l~r~vl~glrrn~f~~ptki-----QaaAIP~~~~kmDliVQaKSG-TGKTlVfsv~av~sl~~~~----- 91 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRRNAFALPTKI-----QAAAIPAIFSKMDLIVQAKSG-TGKTLVFSVLAVESLDSRS----- 91 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcccCCCch-----hhhhhhhhhcccceEEEecCC-CCceEEEEeeeehhcCccc-----
Confidence 44455444 89999999999999999999 999999999999999999999 9999999999998877643
Q ss_pred CCCCcEEEEEeccHHHHHHHHHHHHhccc--CCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCC
Q 011963 253 SFTGPFLLFLVSSQEKAAKVRSVCKPLKA--FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSG 330 (474)
Q Consensus 253 ~~~~~~alil~PtreLa~Qi~~~~~~l~~--~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~ 330 (474)
..++++||+||||+|.||++.+..++. .|+++..++||++......+|+. ++|+|||||||..|+..+.++.++
T Consensus 92 --~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~--~rIvIGtPGRi~qL~el~~~n~s~ 167 (980)
T KOG4284|consen 92 --SHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ--TRIVIGTPGRIAQLVELGAMNMSH 167 (980)
T ss_pred --CcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh--ceEEecCchHHHHHHHhcCCCccc
Confidence 689999999999999999999999944 49999999999999988888876 789999999999999999999999
Q ss_pred cceEEeccccccCC----hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEE
Q 011963 331 VSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNV 406 (474)
Q Consensus 331 l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~ 406 (474)
|++||+||||.|++ ++++..|+..+|..+|++.||||+|..+..++..||++|. .|..... ....-+|.|+++.
T Consensus 168 vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~-lVr~n~~-d~~L~GikQyv~~ 245 (980)
T KOG4284|consen 168 VRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPA-LVRFNAD-DVQLFGIKQYVVA 245 (980)
T ss_pred eeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccc-eeecccC-Cceeechhheeee
Confidence 99999999999999 9999999999999999999999999999999999999998 7888766 5666789999998
Q ss_pred cCCchhH---HHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhh
Q 011963 407 CASDEEK---ILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIK 472 (474)
Q Consensus 407 ~~~~~~K---~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk 472 (474)
+++.... +..-++.|.++++.-. ..++||||+....|+-++.+|...|++|. .+|-.++..+|
T Consensus 246 ~~s~nnsveemrlklq~L~~vf~~ip---y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr 319 (980)
T KOG4284|consen 246 KCSPNNSVEEMRLKLQKLTHVFKSIP---YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLR 319 (980)
T ss_pred ccCCcchHHHHHHHHHHHHHHHhhCc---hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhh
Confidence 7764321 1122255556655555 78999999999999999999999999987 45555665554
No 31
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.5e-39 Score=336.07 Aligned_cols=269 Identities=13% Similarity=0.191 Sum_probs=232.1
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.++++|...||..|||+ |.++|+.+++|+|++++|||| ||||++|++|++..+... ..+.++||
T Consensus 35 l~~~~~~~l~~~~~~~~~~~-----Q~~ai~~i~~~~d~ii~apTG-sGKT~~~~l~~l~~~~~~-------~~~~~~li 101 (401)
T PTZ00424 35 LNEDLLRGIYSYGFEKPSAI-----QQRGIKPILDGYDTIGQAQSG-TGKTATFVIAALQLIDYD-------LNACQALI 101 (401)
T ss_pred CCHHHHHHHHHcCCCCCCHH-----HHHHHHHHhCCCCEEEECCCC-ChHHHHHHHHHHHHhcCC-------CCCceEEE
Confidence 88999999999999999999 999999999999999999999 999999999999877532 14679999
Q ss_pred EeccHHHHHHHHHHHHhcc-cCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 262 LVSSQEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l~-~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
|+||+|||.|+++.+..+. ..++.+..++||.....+...+.. +++|+|+||++|.+++..+.+.++++++|||||||
T Consensus 102 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah 180 (401)
T PTZ00424 102 LAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKA-GVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD 180 (401)
T ss_pred ECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcC-CCCEEEECcHHHHHHHHhCCcccccccEEEEecHH
Confidence 9999999999999999984 448888899999998888888887 79999999999999999888889999999999999
Q ss_pred ccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHH
Q 011963 341 SLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l 417 (474)
++++ ...+..++..++.+.|+++||||+|+.+..+...++.+|. .+.+... .....++.++++.++....+.
T Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--- 255 (401)
T PTZ00424 181 EMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPK-RILVKKD-ELTLEGIRQFYVAVEKEEWKF--- 255 (401)
T ss_pred HHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCE-EEEeCCC-CcccCCceEEEEecChHHHHH---
Confidence 9997 6678889999999999999999999999999999999887 5555443 345567888888886545455
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 418 IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 418 ~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
..+..++.... ..++||||+|+..|+.++..|...|+.+. .+|..++++|++
T Consensus 256 -~~l~~~~~~~~---~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~ 315 (401)
T PTZ00424 256 -DTLCDLYETLT---ITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS 315 (401)
T ss_pred -HHHHHHHHhcC---CCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34444444444 67899999999999999999999988876 677888999985
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-40 Score=323.46 Aligned_cols=267 Identities=15% Similarity=0.246 Sum_probs=242.2
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
|.+.+++.+...||++|+.| |+.||+++..|.|+++.|++| ||||.+|++++++.+.... ...+||+
T Consensus 33 L~e~LLrgiy~yGFekPSaI-----QqraI~p~i~G~dv~~qaqsg-TgKt~af~i~iLq~iD~~~-------ke~qali 99 (397)
T KOG0327|consen 33 LKESLLRGIYAYGFEKPSAI-----QQRAILPCIKGHDVIAQAQSG-TGKTAAFLISILQQIDMSV-------KETQALI 99 (397)
T ss_pred CCHHHHhHHHhhccCCchHH-----HhccccccccCCceeEeeecc-ccchhhhHHHHHhhcCcch-------HHHHHHH
Confidence 99999999999999999999 999999999999999999999 9999999999999884432 4669999
Q ss_pred EeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
++||||||.|+..+...+ ...++++..+.||.+...+...+...+++|+|+||||+.++++.+.+....++++|+||||
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 999999999999999998 4459999999999998877777776579999999999999999999999999999999999
Q ss_pred ccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHH
Q 011963 341 SLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l 417 (474)
.|+. .+++..|++++|.+.|+++||||+|.++..+.+.++.+|+ .|.+... ..+...+.|+|+.+.. +.|+..|
T Consensus 180 EmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv-~i~vkk~-~ltl~gikq~~i~v~k-~~k~~~l 256 (397)
T KOG0327|consen 180 EMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPV-RILVKKD-ELTLEGIKQFYINVEK-EEKLDTL 256 (397)
T ss_pred hhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCce-EEEecch-hhhhhheeeeeeeccc-cccccHH
Confidence 9998 9999999999999999999999999999999999999998 8888776 5788999999999974 4588655
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 418 IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 418 ~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
.++... -.+.+|||||+..+..|...|..+|+.+. .+|+..+..||.
T Consensus 257 ~dl~~~---------~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~ 311 (397)
T KOG0327|consen 257 CDLYRR---------VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRS 311 (397)
T ss_pred HHHHHh---------hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhc
Confidence 555552 57899999999999999999999999887 788888999985
No 33
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-40 Score=320.09 Aligned_cols=272 Identities=15% Similarity=0.186 Sum_probs=237.8
Q ss_pred hhHHhh-hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcC--CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCC
Q 011963 176 SKFLIL-CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGF 252 (474)
Q Consensus 176 ~~~~~~-l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~ 252 (474)
+.|..+ |.|+++++|..|+|..|+.| |..|+|.++.. +++|++|..| ||||.||.|.+|.++...
T Consensus 90 ksFeeL~LkPellkgly~M~F~kPskI-----Qe~aLPlll~~Pp~nlIaQsqsG-tGKTaaFvL~MLsrvd~~------ 157 (477)
T KOG0332|consen 90 KSFEELRLKPELLKGLYAMKFQKPSKI-----QETALPLLLAEPPQNLIAQSQSG-TGKTAAFVLTMLSRVDPD------ 157 (477)
T ss_pred ccHHhhCCCHHHHhHHHHhccCCcchH-----HHhhcchhhcCCchhhhhhhcCC-CchhHHHHHHHHHhcCcc------
Confidence 344444 99999999999999999999 99999999998 6999999999 999999999999877654
Q ss_pred CCCCcEEEEEeccHHHHHHHHHHHHhcccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHc-CCCCCCC
Q 011963 253 SFTGPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL-KAIDVSG 330 (474)
Q Consensus 253 ~~~~~~alil~PtreLa~Qi~~~~~~l~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~-~~~~l~~ 330 (474)
...|+|+.|+||||||.|+.+++.++..+ ++.+..++.|....+ -..+. -+|+|+|||-+++++.. +.+++..
T Consensus 158 -~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~r-G~~i~---eqIviGTPGtv~Dlm~klk~id~~k 232 (477)
T KOG0332|consen 158 -VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKR-GNKLT---EQIVIGTPGTVLDLMLKLKCIDLEK 232 (477)
T ss_pred -ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccccc-CCcch---hheeeCCCccHHHHHHHHHhhChhh
Confidence 36899999999999999999999999555 888888877752211 11222 38999999999999888 9999999
Q ss_pred cceEEeccccccCC----hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEE
Q 011963 331 VSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNV 406 (474)
Q Consensus 331 l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~ 406 (474)
++++|+||||.|++ .++-..|...+|.+.|+++||||+...+..++..++++|. .+.+... ..+..+|.|+|+.
T Consensus 233 ikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n-~i~Lk~e-el~L~~IkQlyv~ 310 (477)
T KOG0332|consen 233 IKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNAN-VIILKRE-ELALDNIKQLYVL 310 (477)
T ss_pred ceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCc-eeeeehh-hccccchhhheee
Confidence 99999999999999 7888899999999999999999999999999999999997 6666655 6788899999999
Q ss_pred cCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 407 CASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 407 ~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
|..+.+|+..| ..++.... -+++||||.|+..|.+|+..|...|+.|+ .+|+.++.+||+
T Consensus 311 C~~~~~K~~~l----~~lyg~~t---igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~ 378 (477)
T KOG0332|consen 311 CACRDDKYQAL----VNLYGLLT---IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFRE 378 (477)
T ss_pred ccchhhHHHHH----HHHHhhhh---hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhc
Confidence 99999999544 44444444 78999999999999999999999999998 799999999985
No 34
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-39 Score=323.66 Aligned_cols=252 Identities=18% Similarity=0.199 Sum_probs=210.3
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHh---------cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCC
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYS---------SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGF 252 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l---------~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~ 252 (474)
|...+.++|..|++++.+|| |...+|.++ .++||+|.|||| |||||||.||+++.+..++
T Consensus 144 lea~~~q~l~k~~is~~FPV-----Q~aVlp~ll~~~~~p~~~r~rDIcV~ApTG-SGKTLaY~iPIVQ~L~~R~----- 212 (620)
T KOG0350|consen 144 LEATIDQLLVKMAISRLFPV-----QYAVLPSLLEEIRSPPPSRPRDICVNAPTG-SGKTLAYVIPIVQLLSSRP----- 212 (620)
T ss_pred HHHHHHHHHHHhhcccccch-----HHHHHHHHHHhhcCCCCCCCCceEEecCCC-CCceeeehhHHHHHHccCC-----
Confidence 77788899999999999999 999999884 258999999999 9999999999999888754
Q ss_pred CCCCcEEEEEeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCC----cEEEEChHHHHHHHHc-CCC
Q 011963 253 SFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEP----EFLVSTPERLLKLVSL-KAI 326 (474)
Q Consensus 253 ~~~~~~alil~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~----~IlV~TP~rL~~ll~~-~~~ 326 (474)
.+..+||||+|||+|+.||+++|..+ .+.|+.|+++.|..+.+.+...|....+ ||||+|||||++|+.+ +.|
T Consensus 213 -v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f 291 (620)
T KOG0350|consen 213 -VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSF 291 (620)
T ss_pred -ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCc
Confidence 24689999999999999999999999 5669999999999999999999977556 9999999999999996 899
Q ss_pred CCCCcceEEeccccccCC---hhHHHHHHhhCC----------------------------------CCCcEEEEEccCC
Q 011963 327 DVSGVSLLVVDRLDSLSK---GDTLSLIRQSIS----------------------------------GKPHTVVFNDCLT 369 (474)
Q Consensus 327 ~l~~l~~lViDEad~ll~---~~~l~~Il~~l~----------------------------------~~~q~llfSAT~~ 369 (474)
+|++|+||||||||||++ ++.+..++..+. +..+.++||||++
T Consensus 292 ~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLs 371 (620)
T KOG0350|consen 292 DLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLS 371 (620)
T ss_pred chhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhh
Confidence 999999999999999999 444444443331 1235789999999
Q ss_pred ccHHHHHHHhhcCCceEEEccC---CcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhH
Q 011963 370 YTSVPAVQNLLLGSINRLSLNQ---SVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKF 446 (474)
Q Consensus 370 ~~v~~l~~~~l~~p~~~v~v~~---~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a 446 (474)
.....+...-+..|. .+.+.. ...+.+..+.|+++.|.. .-|...++.+| .... ..++|+|++|...+
T Consensus 372 qdP~Kl~~l~l~~Pr-l~~v~~~~~~ryslp~~l~~~~vv~~~-~~kpl~~~~lI----~~~k---~~r~lcf~~S~~sa 442 (620)
T KOG0350|consen 372 QDPSKLKDLTLHIPR-LFHVSKPLIGRYSLPSSLSHRLVVTEP-KFKPLAVYALI----TSNK---LNRTLCFVNSVSSA 442 (620)
T ss_pred cChHHHhhhhcCCCc-eEEeecccceeeecChhhhhceeeccc-ccchHhHHHHH----HHhh---cceEEEEecchHHH
Confidence 999999999999994 222221 226778889999999964 45774444444 4444 78999999999999
Q ss_pred HHHHHHHh
Q 011963 447 QNLVSTLK 454 (474)
Q Consensus 447 ~~l~~~L~ 454 (474)
.+|+..|.
T Consensus 443 ~Rl~~~L~ 450 (620)
T KOG0350|consen 443 NRLAHVLK 450 (620)
T ss_pred HHHHHHHH
Confidence 99999997
No 35
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-39 Score=330.81 Aligned_cols=275 Identities=17% Similarity=0.208 Sum_probs=238.0
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.+++.+...||..|||| |++|||.++.++|+++||||| |||||||.+|++.+|.......+ ..|.+++|
T Consensus 143 ~~~~ll~nl~~~~F~~Pt~i-----q~~aipvfl~~r~~lAcapTG-sgKtlaf~~Pil~~L~~~~~~~~--~~gl~a~I 214 (593)
T KOG0344|consen 143 MNKRLLENLQELGFDEPTPI-----QKQAIPVFLEKRDVLACAPTG-SGKTLAFNLPILQHLKDLSQEKH--KVGLRALI 214 (593)
T ss_pred hcHHHHHhHhhCCCCCCCcc-----cchhhhhhhcccceEEeccCC-CcchhhhhhHHHHHHHHhhcccC--ccceEEEE
Confidence 78899999999999999999 999999999999999999999 99999999999999988764222 36899999
Q ss_pred EeccHHHHHHHHHHHHhcc--c-CCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCC--CCCCCcceEEe
Q 011963 262 LVSSQEKAAKVRSVCKPLK--A-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA--IDVSGVSLLVV 336 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l~--~-~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~--~~l~~l~~lVi 336 (474)
|+||||||.|+|.++..+. . .+++++.+............+....+||+|+||.||..++..+. +++++|.|||+
T Consensus 215 l~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~ 294 (593)
T KOG0344|consen 215 LSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVV 294 (593)
T ss_pred ecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEee
Confidence 9999999999999999995 3 36666665555333333333333368999999999999999865 89999999999
Q ss_pred ccccccCC----hhHHHHHHhhCC-CCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCch
Q 011963 337 DRLDSLSK----GDTLSLIRQSIS-GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDE 411 (474)
Q Consensus 337 DEad~ll~----~~~l~~Il~~l~-~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~ 411 (474)
||||++++ ..++..|++.|. ++..+-+||||++..|++|+...+.++. .|.++.. ++...+|.|..++|.++.
T Consensus 295 dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~-~vivg~~-~sa~~~V~QelvF~gse~ 372 (593)
T KOG0344|consen 295 DEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLK-RVIVGLR-NSANETVDQELVFCGSEK 372 (593)
T ss_pred chHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccce-eEEEecc-hhHhhhhhhhheeeecch
Confidence 99999998 788889999885 6788999999999999999999999998 8888877 777889999999999999
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHH-hhCCCccc--------chHHHHHHHhhc
Q 011963 412 EKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTL-KCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 412 ~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L-~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
.|+ -.+++++..+. .+|+|||+.|.++|..|+..| ...+++++ .+|+.+++.||.
T Consensus 373 ~K~----lA~rq~v~~g~---~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~ 436 (593)
T KOG0344|consen 373 GKL----LALRQLVASGF---KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI 436 (593)
T ss_pred hHH----HHHHHHHhccC---CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc
Confidence 999 45555666666 899999999999999999999 78888877 789999999984
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=6.1e-37 Score=338.60 Aligned_cols=268 Identities=10% Similarity=0.130 Sum_probs=202.0
Q ss_pred hhhHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEE
Q 011963 180 ILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFL 259 (474)
Q Consensus 180 ~~l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~a 259 (474)
.|+++.+.++|+++||..|||+ |.++||.++.|+|++++|||| ||||+||+||+++.+... .++++
T Consensus 19 ~~l~~~l~~~L~~~g~~~p~~~-----Q~~ai~~il~G~nvvv~apTG-SGKTla~~LPiL~~l~~~--------~~~~a 84 (742)
T TIGR03817 19 AWAHPDVVAALEAAGIHRPWQH-----QARAAELAHAGRHVVVATGTA-SGKSLAYQLPVLSALADD--------PRATA 84 (742)
T ss_pred CcCCHHHHHHHHHcCCCcCCHH-----HHHHHHHHHCCCCEEEECCCC-CcHHHHHHHHHHHHHhhC--------CCcEE
Confidence 3488999999999999999999 999999999999999999999 999999999999998753 36799
Q ss_pred EEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcC----CCCCCCcceEE
Q 011963 260 LFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK----AIDVSGVSLLV 335 (474)
Q Consensus 260 lil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~----~~~l~~l~~lV 335 (474)
|||+||||||.|++..++.+...++++..+.|+++.. +...+.. +++|||+||++|...+-.. ...+++|++||
T Consensus 85 L~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~-~r~~i~~-~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vV 162 (742)
T TIGR03817 85 LYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTE-ERRWARE-HARYVLTNPDMLHRGILPSHARWARFLRRLRYVV 162 (742)
T ss_pred EEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHH-HHHHHhc-CCCEEEEChHHHHHhhccchhHHHHHHhcCCEEE
Confidence 9999999999999999999964588998888888754 4456666 7999999999997533221 12378999999
Q ss_pred eccccccCC--hhHHHHH-------HhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEE
Q 011963 336 VDRLDSLSK--GDTLSLI-------RQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNV 406 (474)
Q Consensus 336 iDEad~ll~--~~~l~~I-------l~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~ 406 (474)
|||||+|.+ ...+..+ ....+.++|+++||||+++. .+++..+++.|...| ... ...... .+.++.
T Consensus 163 iDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~-~~~~~~l~g~~~~~i--~~~-~~~~~~-~~~~~~ 237 (742)
T TIGR03817 163 IDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADP-AAAASRLIGAPVVAV--TED-GSPRGA-RTVALW 237 (742)
T ss_pred EeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCH-HHHHHHHcCCCeEEE--CCC-CCCcCc-eEEEEe
Confidence 999999987 3444333 33446789999999999986 457888888886333 221 122222 233322
Q ss_pred cCCc------------hhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhC--------CCccc-----
Q 011963 407 CASD------------EEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK--------GYSIS----- 461 (474)
Q Consensus 407 ~~~~------------~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~--------gi~v~----- 461 (474)
.+.. .........+|..++.. ..++||||||+..|+.++..|+.. +..+.
T Consensus 238 ~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~-----~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg 312 (742)
T TIGR03817 238 EPPLTELTGENGAPVRRSASAEAADLLADLVAE-----GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAG 312 (742)
T ss_pred cCCccccccccccccccchHHHHHHHHHHHHHC-----CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecC
Confidence 2210 00011222556666554 459999999999999999998753 33433
Q ss_pred ---chHHHHHHHhhc
Q 011963 462 ---TGSNCIVSHIKN 473 (474)
Q Consensus 462 ---~~r~~~i~~Fk~ 473 (474)
.+|..++++|++
T Consensus 313 ~~~~eR~~ie~~f~~ 327 (742)
T TIGR03817 313 YLPEDRRELERALRD 327 (742)
T ss_pred CCHHHHHHHHHHHHc
Confidence 678899999985
No 37
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.3e-38 Score=291.75 Aligned_cols=243 Identities=17% Similarity=0.187 Sum_probs=221.8
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
|.|++++++-..||++|+.+ |.++||...-|-||+++|.+| -|||..|.|..++.|.... ....+|+
T Consensus 49 lkpellraivdcgfehpsev-----qhecipqailgmdvlcqaksg-mgktavfvl~tlqqiepv~-------g~vsvlv 115 (387)
T KOG0329|consen 49 LKPELLRAIVDCGFEHPSEV-----QHECIPQAILGMDVLCQAKSG-MGKTAVFVLATLQQIEPVD-------GQVSVLV 115 (387)
T ss_pred cCHHHHHHHHhccCCCchHh-----hhhhhhHHhhcchhheecccC-CCceeeeehhhhhhcCCCC-------CeEEEEE
Confidence 89999999999999999999 999999999999999999999 9999999999998776532 4668899
Q ss_pred EeccHHHHHHHHHHHHhc-ccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEa 339 (474)
+|.|||||-||..+...+ ++. ++++..++||.++....+.|.+ -|+|+|+||||++.+.+++.++|++++.+|||||
T Consensus 116 mchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~-~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEc 194 (387)
T KOG0329|consen 116 MCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN-CPHIVVGTPGRILALVRNRSLNLKNVKHFVLDEC 194 (387)
T ss_pred EeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC-CCeEEEcCcHHHHHHHHhccCchhhcceeehhhH
Confidence 999999999999999999 555 8999999999999999999999 6999999999999999999999999999999999
Q ss_pred cccCC----hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHH
Q 011963 340 DSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKIL 415 (474)
Q Consensus 340 d~ll~----~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~ 415 (474)
|.|++ +.++..|++..|+..|+++||||++.+++..++++|.+|. .|-+++....+..++.|+|+... +..|..
T Consensus 195 dkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPm-Ei~vDdE~KLtLHGLqQ~YvkLk-e~eKNr 272 (387)
T KOG0329|consen 195 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPM-EIFVDDEAKLTLHGLQQYYVKLK-ENEKNR 272 (387)
T ss_pred HHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCch-hhhccchhhhhhhhHHHHHHhhh-hhhhhh
Confidence 99998 8899999999999999999999999999999999999998 77777765678889999999986 567887
Q ss_pred HHHHHHHHHhhccCCCCCCcEEEEEccchhHH
Q 011963 416 KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQ 447 (474)
Q Consensus 416 ~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~ 447 (474)
.+.++|..+ ...+++||+.|..+..
T Consensus 273 kl~dLLd~L-------eFNQVvIFvKsv~Rl~ 297 (387)
T KOG0329|consen 273 KLNDLLDVL-------EFNQVVIFVKSVQRLS 297 (387)
T ss_pred hhhhhhhhh-------hhcceeEeeehhhhhh
Confidence 777888776 2679999998887744
No 38
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.5e-33 Score=321.82 Aligned_cols=255 Identities=13% Similarity=0.092 Sum_probs=199.3
Q ss_pred HHHHHHHHhC-CCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEE
Q 011963 184 NAIENAMRHD-GVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (474)
Q Consensus 184 ~~i~~~l~~~-g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil 262 (474)
..+.+.+++. || .|||+ |..+||.++.|+|++++|||| ||||+ |++|++..+.. .++++|||
T Consensus 67 ~~~~~~f~~~~G~-~pt~i-----Q~~~i~~il~g~dv~i~ApTG-sGKT~-f~l~~~~~l~~---------~g~~alIL 129 (1176)
T PRK09401 67 KEFEKFFKKKTGS-KPWSL-----QRTWAKRLLLGESFAIIAPTG-VGKTT-FGLVMSLYLAK---------KGKKSYII 129 (1176)
T ss_pred HHHHHHHHHhcCC-CCcHH-----HHHHHHHHHCCCcEEEEcCCC-CCHHH-HHHHHHHHHHh---------cCCeEEEE
Confidence 4455566554 77 89999 999999999999999999999 99995 77776655432 37799999
Q ss_pred eccHHHHHHHHHHHHhc-ccCCcEEEEEecCCC-----HHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEe
Q 011963 263 VSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAA-----IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVV 336 (474)
Q Consensus 263 ~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~-----~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lVi 336 (474)
+|||+||.|+++.++.+ ...++.+..++|+.+ ...+...+..+.++|+|+||++|.+++. .+....+++|||
T Consensus 130 ~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVv 207 (1176)
T PRK09401 130 FPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFV 207 (1176)
T ss_pred eccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEE
Confidence 99999999999999999 445888888887754 3344556666579999999999999887 466677999999
Q ss_pred ccccccCC---------------hhHHHHHHhhCCC------------------------CCcEEEEEccCCcc-HHHHH
Q 011963 337 DRLDSLSK---------------GDTLSLIRQSISG------------------------KPHTVVFNDCLTYT-SVPAV 376 (474)
Q Consensus 337 DEad~ll~---------------~~~l~~Il~~l~~------------------------~~q~llfSAT~~~~-v~~l~ 376 (474)
||||+|++ .+++..++..++. .+|+++||||+++. +..
T Consensus 208 DEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~-- 285 (1176)
T PRK09401 208 DDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV-- 285 (1176)
T ss_pred EChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH--
Confidence 99999984 2577778877764 68999999999975 432
Q ss_pred HHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchh---HHHHHHHH
Q 011963 377 QNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSK---FQNLVSTL 453 (474)
Q Consensus 377 ~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~---a~~l~~~L 453 (474)
.++.++. .+.++.. .....+|.|.|+.++ ++...|..++..+ +.++||||+|+.. |++|+..|
T Consensus 286 -~l~~~ll-~~~v~~~-~~~~rnI~~~yi~~~---~k~~~L~~ll~~l--------~~~~LIFv~t~~~~~~ae~l~~~L 351 (1176)
T PRK09401 286 -KLFRELL-GFEVGSP-VFYLRNIVDSYIVDE---DSVEKLVELVKRL--------GDGGLIFVPSDKGKEYAEELAEYL 351 (1176)
T ss_pred -HHhhccc-eEEecCc-ccccCCceEEEEEcc---cHHHHHHHHHHhc--------CCCEEEEEecccChHHHHHHHHHH
Confidence 2344554 5666654 456678999999875 4665555555443 4689999999888 99999999
Q ss_pred hhCCCccc---chHHHHHHHhhc
Q 011963 454 KCKGYSIS---TGSNCIVSHIKN 473 (474)
Q Consensus 454 ~~~gi~v~---~~r~~~i~~Fk~ 473 (474)
+..|++|. ......+++|++
T Consensus 352 ~~~gi~v~~~hg~l~~~l~~F~~ 374 (1176)
T PRK09401 352 EDLGINAELAISGFERKFEKFEE 374 (1176)
T ss_pred HHCCCcEEEEeCcHHHHHHHHHC
Confidence 99999977 233466799986
No 39
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.9e-33 Score=307.04 Aligned_cols=253 Identities=11% Similarity=0.046 Sum_probs=197.1
Q ss_pred CCCCccccCCCchhhHHHHHHHhcCC-cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE-EeccHHHHH
Q 011963 193 DGVEQDNPLFVNSWGIEFWKCYSSAK-DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF-LVSSQEKAA 270 (474)
Q Consensus 193 ~g~~~ptpi~~~~~Q~~~i~~~l~g~-dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali-l~PtreLa~ 270 (474)
.||. |||| |.++||.++.|+ +++++|||| ||||.+|.++++.. ... ...+++|| ++||||||.
T Consensus 12 ~G~~-Ptpi-----Q~~~i~~il~G~~~v~~~apTG-SGKTaa~aafll~~-~~~-------~~~~~rLv~~vPtReLa~ 76 (844)
T TIGR02621 12 HGYS-PFPW-----QLSLAERFVAGQPPESCSTPTG-LGKTSIIAAWLLAV-EIG-------AKVPRRLVYVVNRRTVVD 76 (844)
T ss_pred hCCC-CCHH-----HHHHHHHHHcCCCcceEecCCC-CcccHHHHHhhccc-ccc-------ccccceEEEeCchHHHHH
Confidence 5999 9999 999999999998 688889999 99999877666632 111 14567776 669999999
Q ss_pred HHHHHHHhc-ccC-----------------------CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCC
Q 011963 271 KVRSVCKPL-KAF-----------------------GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI 326 (474)
Q Consensus 271 Qi~~~~~~l-~~~-----------------------~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~ 326 (474)
|+++.++.+ +.+ ++++.+++||.+...|+..+.. +|+|||||+ |++.++.+
T Consensus 77 Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~-~p~IIVgT~----D~i~sr~L 151 (844)
T TIGR02621 77 QVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPH-RPAVIVGTV----DMIGSRLL 151 (844)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCC-CCcEEEECH----HHHcCCcc
Confidence 999999998 333 4889999999999999999988 899999994 66666655
Q ss_pred C----------------CCCcceEEeccccccCC-hhHHHHHHhhC--CC---CCcEEEEEccCCccHHHHHHHhhcCCc
Q 011963 327 D----------------VSGVSLLVVDRLDSLSK-GDTLSLIRQSI--SG---KPHTVVFNDCLTYTSVPAVQNLLLGSI 384 (474)
Q Consensus 327 ~----------------l~~l~~lViDEad~ll~-~~~l~~Il~~l--~~---~~q~llfSAT~~~~v~~l~~~~l~~p~ 384 (474)
+ ++++++|||||||.... .+++..|++.+ +. .+|+++||||++.++..++..++.+|.
T Consensus 152 ~~gYg~~~~~~pi~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~ 231 (844)
T TIGR02621 152 FSGYGCGFKSRPLHAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDY 231 (844)
T ss_pred ccccccccccccchhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCc
Confidence 2 78999999999993222 88999999965 43 269999999999999998888888776
Q ss_pred eEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc---
Q 011963 385 NRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--- 461 (474)
Q Consensus 385 ~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--- 461 (474)
.+.+... ..+..++.|+ +.+. ...|+..+...|..++.. . ++++||||||+..|+.++..|...|+-..
T Consensus 232 -~i~V~~~-~l~a~ki~q~-v~v~-~e~Kl~~lv~~L~~ll~e-~---g~~vLVF~NTv~~Aq~L~~~L~~~g~~lLHG~ 303 (844)
T TIGR02621 232 -KHPVLKK-RLAAKKIVKL-VPPS-DEKFLSTMVKELNLLMKD-S---GGAILVFCRTVKHVRKVFAKLPKEKFELLTGT 303 (844)
T ss_pred -eeecccc-cccccceEEE-EecC-hHHHHHHHHHHHHHHHhh-C---CCcEEEEECCHHHHHHHHHHHHhcCCeEeeCC
Confidence 5666543 4555677774 4443 344655555555554433 2 57999999999999999999999988221
Q ss_pred ---chHH-----HHHHHhhc
Q 011963 462 ---TGSN-----CIVSHIKN 473 (474)
Q Consensus 462 ---~~r~-----~~i~~Fk~ 473 (474)
.+|+ .+++.|++
T Consensus 304 m~q~dR~~~~~~~il~~Fk~ 323 (844)
T TIGR02621 304 LRGAERDDLVKKEIFNRFLP 323 (844)
T ss_pred CCHHHHhhHHHHHHHHHHhc
Confidence 5677 67889975
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=3e-32 Score=306.74 Aligned_cols=273 Identities=13% Similarity=0.096 Sum_probs=198.5
Q ss_pred hhhHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEE
Q 011963 180 ILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFL 259 (474)
Q Consensus 180 ~~l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~a 259 (474)
.++++.+.+.+.. +|..|||+ |.+|||.++.|+|++++|||| ||||+||++|+++.+...... +....++++
T Consensus 16 ~~l~~~v~~~~~~-~~~~~tpi-----Q~~Ai~~il~g~nvli~APTG-SGKTlaa~Lpil~~l~~~~~~-~~~~~~~~~ 87 (876)
T PRK13767 16 DLLRPYVREWFKE-KFGTFTPP-----QRYAIPLIHEGKNVLISSPTG-SGKTLAAFLAIIDELFRLGRE-GELEDKVYC 87 (876)
T ss_pred hhcCHHHHHHHHH-ccCCCCHH-----HHHHHHHHHcCCCEEEECCCC-CcHHHHHHHHHHHHHHhhccc-cCCCCCeEE
Confidence 3478888887765 89999999 999999999999999999999 999999999999998864321 111257899
Q ss_pred EEEeccHHHHHHHHHHHHh-------c-----ccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCC
Q 011963 260 LFLVSSQEKAAKVRSVCKP-------L-----KAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI 326 (474)
Q Consensus 260 lil~PtreLa~Qi~~~~~~-------l-----~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~ 326 (474)
|||+|||+||.|+++.+.. + ... ++++...+|+++...+...+.+ +|+|||+||++|..++....+
T Consensus 88 LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~-~p~IlVtTPE~L~~ll~~~~~ 166 (876)
T PRK13767 88 LYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKK-PPHILITTPESLAILLNSPKF 166 (876)
T ss_pred EEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhC-CCCEEEecHHHHHHHhcChhH
Confidence 9999999999999886542 1 123 6789999999998887777777 899999999999988876544
Q ss_pred --CCCCcceEEeccccccCC---hh----HHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcC-----C--ceEEEcc
Q 011963 327 --DVSGVSLLVVDRLDSLSK---GD----TLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLG-----S--INRLSLN 390 (474)
Q Consensus 327 --~l~~l~~lViDEad~ll~---~~----~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~-----p--~~~v~v~ 390 (474)
.++++++|||||+|.|++ .. .+.++....+...|+++||||+++ ...++.++... + ...+...
T Consensus 167 ~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~ 245 (876)
T PRK13767 167 REKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDAR 245 (876)
T ss_pred HHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccC
Confidence 478999999999999996 33 344444555578999999999987 45555444321 2 2122111
Q ss_pred CCcccccCCcEEEEE-------EcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhC------C
Q 011963 391 QSVASQSACIIQSVN-------VCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK------G 457 (474)
Q Consensus 391 ~~~~~~~~~i~q~~~-------~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~------g 457 (474)
. ...+...+. .+. .......++..|..++.. ..++||||||+..|+.++..|+.. +
T Consensus 246 ~-----~k~~~i~v~~p~~~l~~~~-~~~~~~~l~~~L~~~i~~-----~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~ 314 (876)
T PRK13767 246 F-----VKPFDIKVISPVDDLIHTP-AEEISEALYETLHELIKE-----HRTTLIFTNTRSGAERVLYNLRKRFPEEYDE 314 (876)
T ss_pred C-----CccceEEEeccCccccccc-cchhHHHHHHHHHHHHhc-----CCCEEEEeCCHHHHHHHHHHHHHhchhhccc
Confidence 1 011111111 111 122234455666666655 358999999999999999999862 2
Q ss_pred Cccc--------chHHHHHHHhhc
Q 011963 458 YSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 458 i~v~--------~~r~~~i~~Fk~ 473 (474)
..+. .+|..+++.||+
T Consensus 315 ~~i~~hHg~ls~~~R~~ve~~fk~ 338 (876)
T PRK13767 315 DNIGAHHSSLSREVRLEVEEKLKR 338 (876)
T ss_pred cceeeeeCCCCHHHHHHHHHHHHc
Confidence 3332 578888999986
No 41
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=291.33 Aligned_cols=270 Identities=14% Similarity=0.126 Sum_probs=215.7
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
|++.+.++|+.. |..|||. |.+|||.+.+|+|+|++|||| ||||+|..||++..|.... .+....+..|||
T Consensus 8 l~~~v~~~~~~~-~~~~t~~-----Q~~a~~~i~~G~nvLiiAPTG-sGKTeAAfLpil~~l~~~~--~~~~~~~i~~lY 78 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPP-----QRYAIPEIHSGENVLIIAPTG-SGKTEAAFLPVINELLSLG--KGKLEDGIYALY 78 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHH-----HHHHHHHHhCCCceEEEcCCC-CChHHHHHHHHHHHHHhcc--CCCCCCceEEEE
Confidence 889999999988 9999999 999999999999999999999 9999999999999999874 222235899999
Q ss_pred EeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCC--CCCCcceEEecc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI--DVSGVSLLVVDR 338 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~--~l~~l~~lViDE 338 (474)
|+|-|+|+..+...+..+ ..+|+.+..-+|+++.......+.+ +|||||+|||.|.-++..+.+ .|++|+|+||||
T Consensus 79 IsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~-PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDE 157 (814)
T COG1201 79 ISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKN-PPHILITTPESLAILLNSPKFRELLRDVRYVIVDE 157 (814)
T ss_pred eCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCC-CCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeeh
Confidence 999999999999999997 6679999999999998877777777 999999999999988877443 489999999999
Q ss_pred ccccCC-------hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcC--CceEEEccCCcccccCCcEEEEEEcCC
Q 011963 339 LDSLSK-------GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLG--SINRLSLNQSVASQSACIIQSVNVCAS 409 (474)
Q Consensus 339 ad~ll~-------~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~--p~~~v~v~~~~~~~~~~i~q~~~~~~~ 409 (474)
.|.+.+ .-.++++....+ +.|.+++|||+.+ ..+.++.+.+. +...|.+... ......++....
T Consensus 158 iHel~~sKRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~-----k~~~i~v~~p~~ 230 (814)
T COG1201 158 IHALAESKRGVQLALSLERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAA-----KKLEIKVISPVE 230 (814)
T ss_pred hhhhhccccchhhhhhHHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccC-----CcceEEEEecCC
Confidence 999997 334455555556 8999999999996 66777777655 4434554432 233333443321
Q ss_pred c----hhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCC-Cccc--------chHHHHHHHhhc
Q 011963 410 D----EEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKG-YSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 410 ~----~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~g-i~v~--------~~r~~~i~~Fk~ 473 (474)
. +.-...++..|..++++|. .+|||+||+..|+.|+..|++.+ .++. -+|..+-++||+
T Consensus 231 ~~~~~~~~~~~~~~~i~~~v~~~~-----ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~ 302 (814)
T COG1201 231 DLIYDEELWAALYERIAELVKKHR-----TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKE 302 (814)
T ss_pred ccccccchhHHHHHHHHHHHhhcC-----cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhc
Confidence 1 1123446677888887765 99999999999999999999886 4443 456667777775
No 42
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.9e-31 Score=310.58 Aligned_cols=258 Identities=12% Similarity=0.036 Sum_probs=196.0
Q ss_pred HHHHHHHHHh-CCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 183 LNAIENAMRH-DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 183 ~~~i~~~l~~-~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
.+.+.+.|++ .|| .|||+ |..+||.++.|+|++++|||| ||||++++++++.... .+.++||
T Consensus 65 ~~~~~~~f~~~~G~-~pt~i-----Q~~~i~~il~G~d~li~APTG-sGKTl~~~~~al~~~~----------~g~~aLV 127 (1638)
T PRK14701 65 VEEFEEFFEKITGF-EFWSI-----QKTWAKRILRGKSFSIVAPTG-MGKSTFGAFIALFLAL----------KGKKCYI 127 (1638)
T ss_pred HHHHHHHHHHhhCC-CCCHH-----HHHHHHHHHcCCCEEEEEcCC-CCHHHHHHHHHHHHHh----------cCCeEEE
Confidence 4456677776 799 69999 999999999999999999999 9999966666553211 3679999
Q ss_pred EeccHHHHHHHHHHHHhcc-cC--CcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEE
Q 011963 262 LVSSQEKAAKVRSVCKPLK-AF--GIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l~-~~--~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lV 335 (474)
|+|||+|+.|+++.++.+. .. ++++..++||.+...+. ..+.++.++|||+|||+|.+++... . ..++++||
T Consensus 128 l~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iV 205 (1638)
T PRK14701 128 ILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIF 205 (1638)
T ss_pred EECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEE
Confidence 9999999999999999983 33 67888899999987664 4556656999999999999887642 2 26799999
Q ss_pred eccccccCC--------------hhHHHH----HHh----------------------hCCCCCc-EEEEEccCCccHHH
Q 011963 336 VDRLDSLSK--------------GDTLSL----IRQ----------------------SISGKPH-TVVFNDCLTYTSVP 374 (474)
Q Consensus 336 iDEad~ll~--------------~~~l~~----Il~----------------------~l~~~~q-~llfSAT~~~~v~~ 374 (474)
|||||+|++ .+++.. |+. .++..+| +++||||+++. .
T Consensus 206 VDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~ 283 (1638)
T PRK14701 206 VDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--G 283 (1638)
T ss_pred EECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--h
Confidence 999999973 333332 322 2355666 67799999974 1
Q ss_pred HHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchh---HHHHHH
Q 011963 375 AVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSK---FQNLVS 451 (474)
Q Consensus 375 l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~---a~~l~~ 451 (474)
....+++++. .+.++.. ..+..++.|.|+.+. ...+ ..|..+|..+ +..+||||+|++. |+.|+.
T Consensus 284 ~~~~l~~~~l-~f~v~~~-~~~lr~i~~~yi~~~-~~~k-~~L~~ll~~~--------g~~gIVF~~t~~~~e~ae~la~ 351 (1638)
T PRK14701 284 DRVKLYRELL-GFEVGSG-RSALRNIVDVYLNPE-KIIK-EHVRELLKKL--------GKGGLIFVPIDEGAEKAEEIEK 351 (1638)
T ss_pred HHHHHhhcCe-EEEecCC-CCCCCCcEEEEEECC-HHHH-HHHHHHHHhC--------CCCeEEEEeccccchHHHHHHH
Confidence 2224456665 5667655 567788999998875 3434 3444444432 4689999999886 589999
Q ss_pred HHhhCCCccc---chHHHHHHHhhc
Q 011963 452 TLKCKGYSIS---TGSNCIVSHIKN 473 (474)
Q Consensus 452 ~L~~~gi~v~---~~r~~~i~~Fk~ 473 (474)
.|...|++|. ..|..++++|++
T Consensus 352 ~L~~~Gi~a~~~h~~R~~~l~~F~~ 376 (1638)
T PRK14701 352 YLLEDGFKIELVSAKNKKGFDLFEE 376 (1638)
T ss_pred HHHHCCCeEEEecchHHHHHHHHHc
Confidence 9999999976 678899999986
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.4e-31 Score=295.26 Aligned_cols=245 Identities=13% Similarity=0.138 Sum_probs=188.1
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHH-HhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKC-YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLL 260 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~-~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~al 260 (474)
+++.+.+.|+++||..|+|+ |.++|+. ++.|+|++++|||| ||||++|.+|++..+.. .+.++|
T Consensus 8 l~~~~~~~l~~~g~~~l~~~-----Q~~ai~~~~~~g~nvlv~apTG-sGKT~~~~l~il~~l~~---------~~~~~l 72 (720)
T PRK00254 8 VDERIKRVLKERGIEELYPP-----QAEALKSGVLEGKNLVLAIPTA-SGKTLVAEIVMVNKLLR---------EGGKAV 72 (720)
T ss_pred CCHHHHHHHHhCCCCCCCHH-----HHHHHHHHHhCCCcEEEECCCC-cHHHHHHHHHHHHHHHh---------cCCeEE
Confidence 78899999999999999999 9999996 89999999999999 99999999999988865 256999
Q ss_pred EEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 261 FLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 261 il~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
||+||++||.|++..+..+..+|+++..++|+.+...+ .+ . .++|+|+||+++..++..+...++++++|||||+|
T Consensus 73 ~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~--~~-~-~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H 148 (720)
T PRK00254 73 YLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE--WL-G-KYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIH 148 (720)
T ss_pred EEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh--hh-c-cCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcC
Confidence 99999999999999999886679999999999875432 22 3 68999999999999988776778999999999999
Q ss_pred ccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCC-cEEEEEEcCCch-hH-H
Q 011963 341 SLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSAC-IIQSVNVCASDE-EK-I 414 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~-i~q~~~~~~~~~-~K-~ 414 (474)
.+.+ ...++.++..+..++|++++|||+++ ..+++.+ ++.+. +............ +.+.+....... .+ .
T Consensus 149 ~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~w-l~~~~--~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 224 (720)
T PRK00254 149 LIGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAEW-LNAEL--VVSDWRPVKLRKGVFYQGFLFWEDGKIERFP 224 (720)
T ss_pred ccCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHH-hCCcc--ccCCCCCCcceeeEecCCeeeccCcchhcch
Confidence 9987 78889999999889999999999997 5666664 44332 1111110000001 112222222111 11 1
Q ss_pred HHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHh
Q 011963 415 LKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLK 454 (474)
Q Consensus 415 ~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~ 454 (474)
..+..++..++.. +.++||||+|+..|+.++..|.
T Consensus 225 ~~~~~~~~~~i~~-----~~~vLVF~~sr~~~~~~a~~l~ 259 (720)
T PRK00254 225 NSWESLVYDAVKK-----GKGALVFVNTRRSAEKEALELA 259 (720)
T ss_pred HHHHHHHHHHHHh-----CCCEEEEEcChHHHHHHHHHHH
Confidence 2233445555543 5699999999999998887774
No 44
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=4.4e-31 Score=302.05 Aligned_cols=256 Identities=12% Similarity=0.091 Sum_probs=192.6
Q ss_pred HHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEE
Q 011963 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (474)
Q Consensus 183 ~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil 262 (474)
...+.+.+.......|||| |+.+||.++.|+|++++|||| ||||+ |++|++..+.. .++++|||
T Consensus 64 ~~~f~~~f~~~~g~~p~~i-----Q~~~i~~il~G~d~vi~ApTG-sGKT~-f~l~~~~~l~~---------~g~~vLIL 127 (1171)
T TIGR01054 64 LKEFEEFFKKAVGSEPWSI-----QKMWAKRVLRGDSFAIIAPTG-VGKTT-FGLAMSLFLAK---------KGKRCYII 127 (1171)
T ss_pred HHHHHHHHHHhcCCCCcHH-----HHHHHHHHhCCCeEEEECCCC-CCHHH-HHHHHHHHHHh---------cCCeEEEE
Confidence 3456666766555579999 999999999999999999999 99996 88888766543 36799999
Q ss_pred eccHHHHHHHHHHHHhc-ccCCcEEE---EEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEE
Q 011963 263 VSSQEKAAKVRSVCKPL-KAFGIHTV---SLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (474)
Q Consensus 263 ~PtreLa~Qi~~~~~~l-~~~~i~v~---~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lV 335 (474)
+|||+||.|+++.+..+ ...++.+. .++||.+...+ ...+.+++++|||+||++|.+++..- .. ++++||
T Consensus 128 ~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iV 204 (1171)
T TIGR01054 128 LPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIF 204 (1171)
T ss_pred eCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEE
Confidence 99999999999999998 44466543 57899887665 34556656999999999999987752 12 799999
Q ss_pred eccccccCC---------------hhHHHHHH----------------------hhCCCCCc--EEEEEcc-CCccHHHH
Q 011963 336 VDRLDSLSK---------------GDTLSLIR----------------------QSISGKPH--TVVFNDC-LTYTSVPA 375 (474)
Q Consensus 336 iDEad~ll~---------------~~~l~~Il----------------------~~l~~~~q--~llfSAT-~~~~v~~l 375 (474)
|||||+|++ .+.+..|+ +.++.++| +++|||| +|..+..
T Consensus 205 vDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~- 283 (1171)
T TIGR01054 205 VDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA- 283 (1171)
T ss_pred EeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH-
Confidence 999999986 12344433 33455566 5779999 5654432
Q ss_pred HHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccc---hhHHHHHHH
Q 011963 376 VQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKD---SKFQNLVST 452 (474)
Q Consensus 376 ~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~---~~a~~l~~~ 452 (474)
.+++++. .+.++.. .....+|.|.++.+.. +...|..+|..+ +.++||||+|+ +.|++|+..
T Consensus 284 --~l~r~ll-~~~v~~~-~~~~r~I~~~~~~~~~---~~~~L~~ll~~l--------~~~~IVFv~t~~~~~~a~~l~~~ 348 (1171)
T TIGR01054 284 --KLFRELL-GFEVGGG-SDTLRNVVDVYVEDED---LKETLLEIVKKL--------GTGGIVYVSIDYGKEKAEEIAEF 348 (1171)
T ss_pred --HHccccc-ceEecCc-cccccceEEEEEeccc---HHHHHHHHHHHc--------CCCEEEEEeccccHHHHHHHHHH
Confidence 3455554 5677655 5567789999887652 233445555443 46899999999 999999999
Q ss_pred HhhCCCccc---c-hHHHHHHHhhc
Q 011963 453 LKCKGYSIS---T-GSNCIVSHIKN 473 (474)
Q Consensus 453 L~~~gi~v~---~-~r~~~i~~Fk~ 473 (474)
|...|++|. . -++.++++|++
T Consensus 349 L~~~g~~a~~lhg~~~~~~l~~Fr~ 373 (1171)
T TIGR01054 349 LENHGVKAVAYHATKPKEDYEKFAE 373 (1171)
T ss_pred HHhCCceEEEEeCCCCHHHHHHHHc
Confidence 999999976 2 22578999985
No 45
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.98 E-value=5.4e-31 Score=291.89 Aligned_cols=248 Identities=12% Similarity=0.051 Sum_probs=181.1
Q ss_pred CCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHH
Q 011963 193 DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (474)
Q Consensus 193 ~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi 272 (474)
.||..++|+ |.++|++++.|+|+|++|||| +|||+||+||+|. .+..+|||+|+++|+.+.
T Consensus 456 FG~~sFRp~-----Q~eaI~aiL~GrDVLVimPTG-SGKSLcYQLPAL~-------------~~GiTLVISPLiSLmqDQ 516 (1195)
T PLN03137 456 FGNHSFRPN-----QREIINATMSGYDVFVLMPTG-GGKSLTYQLPALI-------------CPGITLVISPLVSLIQDQ 516 (1195)
T ss_pred cCCCCCCHH-----HHHHHHHHHcCCCEEEEcCCC-ccHHHHHHHHHHH-------------cCCcEEEEeCHHHHHHHH
Confidence 499999999 999999999999999999999 8999999999983 234799999999998733
Q ss_pred HHHHHhcccCCcEEEEEecCCCHHHHHHHHhc-----CCCcEEEEChHHHHH---HHHc-CCC-CCCCcceEEecccccc
Q 011963 273 RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRS-----CEPEFLVSTPERLLK---LVSL-KAI-DVSGVSLLVVDRLDSL 342 (474)
Q Consensus 273 ~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~-----~~~~IlV~TP~rL~~---ll~~-~~~-~l~~l~~lViDEad~l 342 (474)
+..|...|+.+..+.|+.....+...+.. +.++|||+|||+|.. ++.. ..+ ....|.+|||||||+|
T Consensus 517 ---V~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcV 593 (1195)
T PLN03137 517 ---IMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCV 593 (1195)
T ss_pred ---HHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhh
Confidence 33343458999999999998877665543 579999999999862 2221 111 2345899999999999
Q ss_pred CC-----hhHHHHH--HhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHH
Q 011963 343 SK-----GDTLSLI--RQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKIL 415 (474)
Q Consensus 343 l~-----~~~l~~I--l~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~ 415 (474)
++ ++.+..| +....+.+|+++||||++..+.+.+...|......+... . ...+++. |.+++......
T Consensus 594 SqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~-S--f~RpNL~--y~Vv~k~kk~l- 667 (1195)
T PLN03137 594 SQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ-S--FNRPNLW--YSVVPKTKKCL- 667 (1195)
T ss_pred hhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec-c--cCccceE--EEEeccchhHH-
Confidence 87 4455442 333345689999999999999887777665433123222 1 1223443 33343222122
Q ss_pred HHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 416 KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 416 ~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
..|..++..+. ...++||||+|++.|+.++..|...|+.+. .+|..++++|++
T Consensus 668 ---e~L~~~I~~~~--~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~ 728 (1195)
T PLN03137 668 ---EDIDKFIKENH--FDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSK 728 (1195)
T ss_pred ---HHHHHHHHhcc--cCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhc
Confidence 23334443322 156899999999999999999999999987 688889999974
No 46
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.98 E-value=8.7e-31 Score=277.58 Aligned_cols=245 Identities=12% Similarity=0.133 Sum_probs=178.4
Q ss_pred CCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHH
Q 011963 193 DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (474)
Q Consensus 193 ~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi 272 (474)
.||..|+|+ |.++|+.++.|+|++++|||| ||||+||++|++. .+..+|||+||+||+.|.
T Consensus 7 ~g~~~~r~~-----Q~~ai~~~l~g~dvlv~apTG-sGKTl~y~lp~l~-------------~~~~~lVi~P~~~L~~dq 67 (470)
T TIGR00614 7 FGLSSFRPV-----QLEVINAVLLGRDCFVVMPTG-GGKSLCYQLPALC-------------SDGITLVISPLISLMEDQ 67 (470)
T ss_pred cCCCCCCHH-----HHHHHHHHHcCCCEEEEcCCC-CcHhHHHHHHHHH-------------cCCcEEEEecHHHHHHHH
Confidence 599999999 999999999999999999999 9999999999983 244799999999999988
Q ss_pred HHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHH-cCCC-CCCCcceEEeccccccCC---
Q 011963 273 RSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVS-LKAI-DVSGVSLLVVDRLDSLSK--- 344 (474)
Q Consensus 273 ~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~-~~~~-~l~~l~~lViDEad~ll~--- 344 (474)
...+..+ |+.+..+.|+.....+. ..+..+.++||++||+++..... ...+ .+.++.+|||||||++++
T Consensus 68 ~~~l~~~---gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~ 144 (470)
T TIGR00614 68 VLQLKAS---GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGH 144 (470)
T ss_pred HHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCcccc
Confidence 7776654 78888888887765433 33445569999999999754221 1112 567899999999999987
Q ss_pred --hhHHH---HHHhhCCCCCcEEEEEccCCccHHHHHHHhh--cCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHH
Q 011963 345 --GDTLS---LIRQSISGKPHTVVFNDCLTYTSVPAVQNLL--LGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417 (474)
Q Consensus 345 --~~~l~---~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l--~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l 417 (474)
...+. .+...+ ++.|+++||||+++.+...+...+ .+|. .+.... ..+++...+... ......
T Consensus 145 ~fr~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~-~~~~s~----~r~nl~~~v~~~--~~~~~~-- 214 (470)
T TIGR00614 145 DFRPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQ-IFCTSF----DRPNLYYEVRRK--TPKILE-- 214 (470)
T ss_pred ccHHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCc-EEeCCC----CCCCcEEEEEeC--CccHHH--
Confidence 33333 344444 468999999999998877666654 3454 332221 123443333222 122332
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 418 IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 418 ~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
.++..+..... +..+||||+|++.|+.++..|...|+++. .+|..++++|++
T Consensus 215 -~l~~~l~~~~~---~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~ 274 (470)
T TIGR00614 215 -DLLRFIRKEFK---GKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQR 274 (470)
T ss_pred -HHHHHHHHhcC---CCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHc
Confidence 22322222333 56779999999999999999999999876 578888999974
No 47
>PRK02362 ski2-like helicase; Provisional
Probab=99.98 E-value=5.4e-31 Score=293.07 Aligned_cols=244 Identities=14% Similarity=0.114 Sum_probs=179.5
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHH-HhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKC-YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLL 260 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~-~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~al 260 (474)
|++.++++|...||..|+|+ |.+||+. +++|+|++++|||| ||||++|.+|++..+.. +.++|
T Consensus 8 lp~~~~~~l~~~g~~~l~p~-----Q~~ai~~~~~~g~nvlv~APTG-SGKTlia~lail~~l~~----------~~kal 71 (737)
T PRK02362 8 LPEGVIEFYEAEGIEELYPP-----QAEAVEAGLLDGKNLLAAIPTA-SGKTLIAELAMLKAIAR----------GGKAL 71 (737)
T ss_pred CCHHHHHHHHhCCCCcCCHH-----HHHHHHHHHhCCCcEEEECCCc-chHHHHHHHHHHHHHhc----------CCcEE
Confidence 78889999999999999999 9999998 78899999999999 99999999999988852 55899
Q ss_pred EEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 261 FLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 261 il~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
||+||++||.|++..+..+..+|+++..++|+...... .+ . .++|+|+||+++..++++....+.++++|||||+|
T Consensus 72 ~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~--~l-~-~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H 147 (737)
T PRK02362 72 YIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE--WL-G-DNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVH 147 (737)
T ss_pred EEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc--cc-C-CCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcc
Confidence 99999999999999999886679999999998765432 22 2 58999999999999998766668899999999999
Q ss_pred ccCC---hhHHHHHHhhC---CCCCcEEEEEccCCccHHHHHHHhhcC-------Cce-EEEccCCcccccCCcEEEEEE
Q 011963 341 SLSK---GDTLSLIRQSI---SGKPHTVVFNDCLTYTSVPAVQNLLLG-------SIN-RLSLNQSVASQSACIIQSVNV 406 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l---~~~~q~llfSAT~~~~v~~l~~~~l~~-------p~~-~v~v~~~~~~~~~~i~q~~~~ 406 (474)
.|.+ ...++.++..+ +...|++++|||+++ ..+++.++-.. |+. ...+.......... .+..+.
T Consensus 148 ~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~~~~~ 225 (737)
T PRK02362 148 LIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQREVE 225 (737)
T ss_pred ccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc-ccccCC
Confidence 9987 55666655444 578999999999987 55555544221 110 00000000000000 111111
Q ss_pred cCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhC
Q 011963 407 CASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK 456 (474)
Q Consensus 407 ~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~ 456 (474)
+.. +. ....++...+.. ++++||||+|+..|+.++..|...
T Consensus 226 ~~~---~~-~~~~~~~~~~~~-----~~~~LVF~~sr~~~~~~a~~L~~~ 266 (737)
T PRK02362 226 VPS---KD-DTLNLVLDTLEE-----GGQCLVFVSSRRNAEGFAKRAASA 266 (737)
T ss_pred Ccc---ch-HHHHHHHHHHHc-----CCCeEEEEeCHHHHHHHHHHHHHH
Confidence 111 11 122334333332 579999999999999999988653
No 48
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.98 E-value=6.5e-31 Score=247.60 Aligned_cols=191 Identities=22% Similarity=0.334 Sum_probs=173.4
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.+.+.|.+.||..|+++ |.++|+.++.|+|++++|||| +|||++|++|+++.+..... ..++++||
T Consensus 6 ~~~~i~~~l~~~~~~~~~~~-----Q~~~~~~~~~~~~~li~~~TG-~GKT~~~~~~~l~~~~~~~~-----~~~~~vii 74 (203)
T cd00268 6 LSPELLRGIYALGFEKPTPI-----QARAIPPLLSGRDVIGQAQTG-SGKTAAFLIPILEKLDPSPK-----KDGPQALI 74 (203)
T ss_pred CCHHHHHHHHHcCCCCCCHH-----HHHHHHHHhcCCcEEEECCCC-CcHHHHHHHHHHHHHHhhcc-----cCCceEEE
Confidence 78889999999999999988 999999999999999999999 99999999999998887531 14789999
Q ss_pred EeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
++||++|+.|+...++.+ ...++.+..++|+.+.......+.. +++|+|+||++|.+++....+.+.++.++|+||+|
T Consensus 75 i~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h 153 (203)
T cd00268 75 LAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKR-GPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEAD 153 (203)
T ss_pred EcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcC-CCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChH
Confidence 999999999999999998 4458999999999988777666665 79999999999999999888889999999999999
Q ss_pred ccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCc
Q 011963 341 SLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSI 384 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~ 384 (474)
.+.+ ...+..++..++..+|+++||||+++.+..++..++.+|+
T Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~ 200 (203)
T cd00268 154 RMLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPV 200 (203)
T ss_pred HhhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCE
Confidence 9987 7778888888988999999999999999999999999886
No 49
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.97 E-value=2.8e-29 Score=273.33 Aligned_cols=243 Identities=15% Similarity=0.141 Sum_probs=179.6
Q ss_pred CCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHH
Q 011963 193 DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (474)
Q Consensus 193 ~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi 272 (474)
.||..++|+ |.++|+.++.|+|++++|||| +|||+||++|++. ....+|||+|+++|+.|.
T Consensus 21 fG~~~~r~~-----Q~~ai~~il~g~dvlv~apTG-sGKTl~y~lpal~-------------~~g~tlVisPl~sL~~dq 81 (607)
T PRK11057 21 FGYQQFRPG-----QQEIIDAVLSGRDCLVVMPTG-GGKSLCYQIPALV-------------LDGLTLVVSPLISLMKDQ 81 (607)
T ss_pred cCCCCCCHH-----HHHHHHHHHcCCCEEEEcCCC-chHHHHHHHHHHH-------------cCCCEEEEecHHHHHHHH
Confidence 599999999 999999999999999999999 9999999999983 133799999999999998
Q ss_pred HHHHHhcccCCcEEEEEecCCCHHHHHH---HHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-----
Q 011963 273 RSVCKPLKAFGIHTVSLHPGAAIDHQIT---GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----- 344 (474)
Q Consensus 273 ~~~~~~l~~~~i~v~~~~gg~~~~~q~~---~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~----- 344 (474)
.+.+..+ |+.+.++.++.+...+.. .+..+.++|+++||++|........+...++.+|||||||++++
T Consensus 82 v~~l~~~---gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~f 158 (607)
T PRK11057 82 VDQLLAN---GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDF 158 (607)
T ss_pred HHHHHHc---CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcc
Confidence 8777655 788888888877665433 34555689999999999742212233455789999999999987
Q ss_pred hh---HHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhh--cCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHH
Q 011963 345 GD---TLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLL--LGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQ 419 (474)
Q Consensus 345 ~~---~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l--~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~ 419 (474)
.+ .+..+...+ ++.|+++||||++..+...+...+ .+|. +.+.. ...+++. +..+. ...+..
T Consensus 159 r~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~--~~~~~---~~r~nl~--~~v~~-~~~~~~---- 225 (607)
T PRK11057 159 RPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPL--IQISS---FDRPNIR--YTLVE-KFKPLD---- 225 (607)
T ss_pred cHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeE--EEECC---CCCCcce--eeeee-ccchHH----
Confidence 33 334445554 468999999999998766555544 4554 32222 1123443 22332 222342
Q ss_pred HHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 420 VLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 420 lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
.|..++.... +.++||||+|++.|+.++..|+..|+++. .+|..++++|++
T Consensus 226 ~l~~~l~~~~---~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~ 284 (607)
T PRK11057 226 QLMRYVQEQR---GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQR 284 (607)
T ss_pred HHHHHHHhcC---CCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHC
Confidence 2333344444 68999999999999999999999999876 678889999974
No 50
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.97 E-value=1.7e-29 Score=274.97 Aligned_cols=245 Identities=14% Similarity=0.087 Sum_probs=183.3
Q ss_pred CCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHH
Q 011963 193 DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (474)
Q Consensus 193 ~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi 272 (474)
.||..++|+ |.++|+.++.|+|++++|||| +|||+||++|++. .+..+|||+|+++|+.|.
T Consensus 9 fg~~~fr~~-----Q~~~i~~il~g~dvlv~~PTG-~GKTl~y~lpal~-------------~~g~~lVisPl~sL~~dq 69 (591)
T TIGR01389 9 FGYDDFRPG-----QEEIISHVLDGRDVLVVMPTG-GGKSLCYQVPALL-------------LKGLTVVISPLISLMKDQ 69 (591)
T ss_pred cCCCCCCHH-----HHHHHHHHHcCCCEEEEcCCC-ccHhHHHHHHHHH-------------cCCcEEEEcCCHHHHHHH
Confidence 699999999 999999999999999999999 9999999999983 133689999999999888
Q ss_pred HHHHHhcccCCcEEEEEecCCCHHHHHH---HHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-----
Q 011963 273 RSVCKPLKAFGIHTVSLHPGAAIDHQIT---GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----- 344 (474)
Q Consensus 273 ~~~~~~l~~~~i~v~~~~gg~~~~~q~~---~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~----- 344 (474)
...++.+ |+.+..+.++.+...... .+..+.++||++||++|........+...++.+|||||||++.+
T Consensus 70 ~~~l~~~---gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~f 146 (591)
T TIGR01389 70 VDQLRAA---GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDF 146 (591)
T ss_pred HHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCcc
Confidence 7777665 788989999888765433 34455799999999999754333345567899999999999986
Q ss_pred hhH---HHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHH
Q 011963 345 GDT---LSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVL 421 (474)
Q Consensus 345 ~~~---l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL 421 (474)
++. +..+...++. .++++||||.+..+...+..++..+...+.+.. ...+++...+.. ...+... |
T Consensus 147 rp~y~~l~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~nl~~~v~~---~~~~~~~----l 215 (591)
T TIGR01389 147 RPEYQRLGSLAERFPQ-VPRIALTATADAETRQDIRELLRLADANEFITS---FDRPNLRFSVVK---KNNKQKF----L 215 (591)
T ss_pred HHHHHHHHHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC---CCCCCcEEEEEe---CCCHHHH----H
Confidence 333 4444555554 459999999999988877777653321222221 122344333322 2345533 3
Q ss_pred HHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 422 DHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 422 ~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
..++..+. ..++||||+|+..|+.++..|...|+++. .+|..++++|++
T Consensus 216 ~~~l~~~~---~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~ 272 (591)
T TIGR01389 216 LDYLKKHR---GQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLY 272 (591)
T ss_pred HHHHHhcC---CCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHc
Confidence 34444444 67999999999999999999999998876 567888899974
No 51
>PRK01172 ski2-like helicase; Provisional
Probab=99.97 E-value=2.2e-29 Score=278.00 Aligned_cols=241 Identities=12% Similarity=0.096 Sum_probs=179.9
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.+++.+...||. ++|+ |.++++.+.+|+|++++|||| ||||++|.++++..+.. +.++||
T Consensus 8 l~~~~~~~~~~~~~~-l~~~-----Q~~ai~~l~~~~nvlv~apTG-SGKTl~a~lail~~l~~----------~~k~v~ 70 (674)
T PRK01172 8 YDDEFLNLFTGNDFE-LYDH-----QRMAIEQLRKGENVIVSVPTA-AGKTLIAYSAIYETFLA----------GLKSIY 70 (674)
T ss_pred CCHHHHHHHhhCCCC-CCHH-----HHHHHHHHhcCCcEEEECCCC-chHHHHHHHHHHHHHHh----------CCcEEE
Confidence 788899999999997 8888 999999999999999999999 99999999999987754 458999
Q ss_pred EeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccc
Q 011963 262 LVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS 341 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ 341 (474)
|+||++||.|+++.+..+...|+++...+|+...... .+ . .++|+|+|||++..++.+....+.++++|||||||+
T Consensus 71 i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~--~~-~-~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~ 146 (674)
T PRK01172 71 IVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD--FI-K-RYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHI 146 (674)
T ss_pred EechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh--hh-c-cCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchh
Confidence 9999999999999999886679999999998764332 22 3 589999999999998887666789999999999999
Q ss_pred cCC---hhHHHHHHh---hCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEE-----EcCCc
Q 011963 342 LSK---GDTLSLIRQ---SISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVN-----VCASD 410 (474)
Q Consensus 342 ll~---~~~l~~Il~---~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~-----~~~~~ 410 (474)
+.+ ...++.++. .++.+.|++++|||+++ ..+++.++ +.+. +..... . ..+...+. .++..
T Consensus 147 l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl-~~~~--~~~~~r---~-vpl~~~i~~~~~~~~~~~ 218 (674)
T PRK01172 147 IGDEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWL-NASL--IKSNFR---P-VPLKLGILYRKRLILDGY 218 (674)
T ss_pred ccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHh-CCCc--cCCCCC---C-CCeEEEEEecCeeeeccc
Confidence 987 445555544 44678999999999987 56666644 3322 111110 0 01111111 12111
Q ss_pred hhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhC
Q 011963 411 EEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK 456 (474)
Q Consensus 411 ~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~ 456 (474)
......+..++...+.. ++++||||+|+..|+.++..|...
T Consensus 219 ~~~~~~~~~~i~~~~~~-----~~~vLVF~~sr~~~~~~a~~L~~~ 259 (674)
T PRK01172 219 ERSQVDINSLIKETVND-----GGQVLVFVSSRKNAEDYAEMLIQH 259 (674)
T ss_pred ccccccHHHHHHHHHhC-----CCcEEEEeccHHHHHHHHHHHHHh
Confidence 11111233444444332 569999999999999999998653
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.96 E-value=2.3e-28 Score=278.89 Aligned_cols=250 Identities=10% Similarity=0.011 Sum_probs=194.2
Q ss_pred HHHHHHhCCCCccccCCCchhhHHHHHHHhcC------CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEE
Q 011963 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA------KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFL 259 (474)
Q Consensus 186 i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g------~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~a 259 (474)
..+.....+| .|||+ |.+|||.++.+ +|+|+++||| ||||++|+++++..+. .+.++
T Consensus 590 ~~~~~~~~~~-~~T~~-----Q~~aI~~il~d~~~~~~~d~Ll~a~TG-sGKT~val~aa~~~~~----------~g~qv 652 (1147)
T PRK10689 590 YQLFCDSFPF-ETTPD-----QAQAINAVLSDMCQPLAMDRLVCGDVG-FGKTEVAMRAAFLAVE----------NHKQV 652 (1147)
T ss_pred HHHHHHhCCC-CCCHH-----HHHHHHHHHHHhhcCCCCCEEEEcCCC-cCHHHHHHHHHHHHHH----------cCCeE
Confidence 3445566688 69999 99999999998 8999999999 9999999988876543 37799
Q ss_pred EEEeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHH---hcCCCcEEEEChHHHHHHHHcCCCCCCCcceEE
Q 011963 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGL---RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (474)
Q Consensus 260 lil~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l---~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lV 335 (474)
+||+||++||.|++..+... ...++++.+++|+.+...+...+ ..+.++||||||+.| ...+.+.++.+||
T Consensus 653 lvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLV 727 (1147)
T PRK10689 653 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLI 727 (1147)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEE
Confidence 99999999999999999985 66689999999998877665544 445799999999643 2456788999999
Q ss_pred eccccccCChhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHH
Q 011963 336 VDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKIL 415 (474)
Q Consensus 336 iDEad~ll~~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~ 415 (474)
|||+|++.. . ...+++.++.++|+++||||+++.+..++...+.++. .|..... ....+.+.+..+.....+.
T Consensus 728 IDEahrfG~-~-~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~-~I~~~p~---~r~~v~~~~~~~~~~~~k~- 800 (1147)
T PRK10689 728 VDEEHRFGV-R-HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLS-IIATPPA---RRLAVKTFVREYDSLVVRE- 800 (1147)
T ss_pred Eechhhcch-h-HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcE-EEecCCC---CCCCceEEEEecCcHHHHH-
Confidence 999999853 2 2345677788999999999998888888888888886 6655432 2234666655543222222
Q ss_pred HHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhC--CCccc--------chHHHHHHHhhc
Q 011963 416 KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK--GYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 416 ~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~--gi~v~--------~~r~~~i~~Fk~ 473 (474)
.++..+. .+++++||||+++.++.++..|... ++.+. .+|+.++++|++
T Consensus 801 ---~il~el~------r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~ 859 (1147)
T PRK10689 801 ---AILREIL------RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 859 (1147)
T ss_pred ---HHHHHHh------cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh
Confidence 3444442 1568999999999999999999887 66655 678899999986
No 53
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.96 E-value=3.9e-28 Score=271.75 Aligned_cols=252 Identities=11% Similarity=0.045 Sum_probs=188.8
Q ss_pred HHHHHHHHh-CCCCccccCCCchhhHHHHHHHhcC------CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCC
Q 011963 184 NAIENAMRH-DGVEQDNPLFVNSWGIEFWKCYSSA------KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTG 256 (474)
Q Consensus 184 ~~i~~~l~~-~g~~~ptpi~~~~~Q~~~i~~~l~g------~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~ 256 (474)
..+.+.+.+ .||. |||+ |.+||+.++.+ .|++++|||| ||||++|++|++..+.. +
T Consensus 438 ~~~~~~~~~~~~f~-~T~~-----Q~~aI~~I~~d~~~~~~~d~Ll~adTG-sGKT~val~a~l~al~~----------g 500 (926)
T TIGR00580 438 LEWQQEFEDSFPFE-ETPD-----QLKAIEEIKADMESPRPMDRLVCGDVG-FGKTEVAMRAAFKAVLD----------G 500 (926)
T ss_pred HHHHHHHHHhCCCC-CCHH-----HHHHHHHHHhhhcccCcCCEEEECCCC-ccHHHHHHHHHHHHHHh----------C
Confidence 344555544 4885 9999 99999999986 6999999999 99999999999987753 5
Q ss_pred cEEEEEeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHH---HHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 257 PFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDH---QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 257 ~~alil~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~---q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
.+++||+||++||.|++..+..+ ..+++++..++|+.+... +...+..+.++||||||. + + .+.+.+.+|.
T Consensus 501 ~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~-l---l-~~~v~f~~L~ 575 (926)
T TIGR00580 501 KQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK-L---L-QKDVKFKDLG 575 (926)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH-H---h-hCCCCcccCC
Confidence 69999999999999999999986 667999999999877544 344566657999999994 2 2 3567889999
Q ss_pred eEEeccccccCChhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchh
Q 011963 333 LLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEE 412 (474)
Q Consensus 333 ~lViDEad~ll~~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~ 412 (474)
+|||||+|++.. .....+..++.++|+++||||.++....++...+.++. .|...+. ....+.+++.... .
T Consensus 576 llVIDEahrfgv--~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s-~I~~~p~---~R~~V~t~v~~~~--~- 646 (926)
T TIGR00580 576 LLIIDEEQRFGV--KQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLS-IIATPPE---DRLPVRTFVMEYD--P- 646 (926)
T ss_pred EEEeecccccch--hHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcE-EEecCCC---CccceEEEEEecC--H-
Confidence 999999999753 23445566778899999999987766665555555664 5554432 1224555554332 1
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhC--CCccc--------chHHHHHHHhhc
Q 011963 413 KILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK--GYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 413 K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~--gi~v~--------~~r~~~i~~Fk~ 473 (474)
..+...+...+.. +++++||||+++.++.++..|+.. ++++. .+|+.++++|++
T Consensus 647 --~~i~~~i~~el~~-----g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~ 710 (926)
T TIGR00580 647 --ELVREAIRRELLR-----GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK 710 (926)
T ss_pred --HHHHHHHHHHHHc-----CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc
Confidence 1122233222222 569999999999999999999874 66654 678899999985
No 54
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.95 E-value=1.5e-26 Score=254.72 Aligned_cols=248 Identities=9% Similarity=0.052 Sum_probs=178.7
Q ss_pred HHHhCCCCccccCCCchhhHHHHHHHhcC------CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEE
Q 011963 189 AMRHDGVEQDNPLFVNSWGIEFWKCYSSA------KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (474)
Q Consensus 189 ~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g------~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil 262 (474)
.+...+| .||++ |.+||+.+..+ .++|++|||| ||||++|++|++..+. .+.+++||
T Consensus 254 ~~~~l~f-~lt~~-----Q~~ai~~I~~d~~~~~~~~~Ll~~~TG-SGKT~va~~~il~~~~----------~g~q~lil 316 (681)
T PRK10917 254 FLASLPF-ELTGA-----QKRVVAEILADLASPKPMNRLLQGDVG-SGKTVVAALAALAAIE----------AGYQAALM 316 (681)
T ss_pred HHHhCCC-CCCHH-----HHHHHHHHHHhhhccCCceEEEECCCC-CcHHHHHHHHHHHHHH----------cCCeEEEE
Confidence 3344577 58888 99999999887 3899999999 9999999999998764 37799999
Q ss_pred eccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHH---HHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecc
Q 011963 263 VSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAID---HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDR 338 (474)
Q Consensus 263 ~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~---~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDE 338 (474)
+||++||.|+++.++.+ ..+|+++..++|+.+.. .+...+..+.++||||||+++.+ .+.+.++.++||||
T Consensus 317 aPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE 391 (681)
T PRK10917 317 APTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDE 391 (681)
T ss_pred eccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEec
Confidence 99999999999999997 66699999999999854 34556667679999999998743 45688999999999
Q ss_pred ccccCChhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHH
Q 011963 339 LDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGI 418 (474)
Q Consensus 339 ad~ll~~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~ 418 (474)
+|++.. . ....+...+..+|+++||||..+.... ..+..+.. ...+... ......+.+.+.... +...++
T Consensus 392 ~Hrfg~-~-qr~~l~~~~~~~~iL~~SATp~prtl~--~~~~g~~~-~s~i~~~-p~~r~~i~~~~~~~~----~~~~~~ 461 (681)
T PRK10917 392 QHRFGV-E-QRLALREKGENPHVLVMTATPIPRTLA--MTAYGDLD-VSVIDEL-PPGRKPITTVVIPDS----RRDEVY 461 (681)
T ss_pred hhhhhH-H-HHHHHHhcCCCCCEEEEeCCCCHHHHH--HHHcCCCc-eEEEecC-CCCCCCcEEEEeCcc----cHHHHH
Confidence 999853 1 122333345578999999997764433 33333322 1112211 112234555554332 223344
Q ss_pred HHHHHHhhccCCCCCCcEEEEEccc--------hhHHHHHHHHhhC--CCccc--------chHHHHHHHhhc
Q 011963 419 QVLDHAYGDHFHSEPLKVLYIVGKD--------SKFQNLVSTLKCK--GYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 419 ~lL~~ll~~~~~~~~~k~LVF~~s~--------~~a~~l~~~L~~~--gi~v~--------~~r~~~i~~Fk~ 473 (474)
..+...+.. +.+++|||++. ..++.+++.|... ++++. .+|+.++++|++
T Consensus 462 ~~i~~~~~~-----g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~ 529 (681)
T PRK10917 462 ERIREEIAK-----GRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKA 529 (681)
T ss_pred HHHHHHHHc-----CCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 555555533 56999999954 4567788888765 45554 688899999985
No 55
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.95 E-value=6.2e-27 Score=269.08 Aligned_cols=222 Identities=10% Similarity=0.100 Sum_probs=157.3
Q ss_pred EEcCCCcchhHHHHHHHHHHHHHHhhhhc---CCCCCCcEEEEEeccHHHHHHHHHHHHh----c---------ccCCcE
Q 011963 222 ETSGSSSTIVQIAWIVATAADSIARKEKE---GFSFTGPFLLFLVSSQEKAAKVRSVCKP----L---------KAFGIH 285 (474)
Q Consensus 222 ~~A~TG~SGKTlaf~lp~l~~l~~~~~~~---~~~~~~~~alil~PtreLa~Qi~~~~~~----l---------~~~~i~ 285 (474)
++|||| ||||+||.||+|..+....... .....++++|||+|||+|+.|+++.++. + ...+++
T Consensus 1 V~APTG-SGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~ 79 (1490)
T PRK09751 1 VIAPTG-SGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLR 79 (1490)
T ss_pred CcCCCC-cHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceE
Confidence 579999 9999999999999998653110 0112468999999999999999998864 1 123799
Q ss_pred EEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcC-CCCCCCcceEEeccccccCC-------hhHHHHHHhhCCC
Q 011963 286 TVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK-AIDVSGVSLLVVDRLDSLSK-------GDTLSLIRQSISG 357 (474)
Q Consensus 286 v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~-~~~l~~l~~lViDEad~ll~-------~~~l~~Il~~l~~ 357 (474)
+...+|+++...+...+.+ +|+|||+|||+|..++.++ ...|++|++|||||+|.|++ ...+.+|...++.
T Consensus 80 V~vrtGDt~~~eR~rll~~-ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~ 158 (1490)
T PRK09751 80 VGIRTGDTPAQERSKLTRN-PPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHT 158 (1490)
T ss_pred EEEEECCCCHHHHHHHhcC-CCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCC
Confidence 9999999999887777776 8999999999999988754 34689999999999999997 2356666666778
Q ss_pred CCcEEEEEccCCccHHHHHHHhhcC-CceEEEccCCcccccCCcEEEEEEcCCchh---------------HHH----HH
Q 011963 358 KPHTVVFNDCLTYTSVPAVQNLLLG-SINRLSLNQSVASQSACIIQSVNVCASDEE---------------KIL----KG 417 (474)
Q Consensus 358 ~~q~llfSAT~~~~v~~l~~~~l~~-p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~---------------K~~----~l 417 (474)
+.|+|+||||+++ ..+++.++... |. .|..... .....+.. ++.+.+..+ ... .+
T Consensus 159 ~~QrIgLSATI~n-~eevA~~L~g~~pv-~Iv~~~~--~r~~~l~v-~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v 233 (1490)
T PRK09751 159 SAQRIGLSATVRS-ASDVAAFLGGDRPV-TVVNPPA--MRHPQIRI-VVPVANMDDVSSVASGTGEDSHAGREGSIWPYI 233 (1490)
T ss_pred CCeEEEEEeeCCC-HHHHHHHhcCCCCE-EEECCCC--CcccceEE-EEecCchhhccccccccccccchhhhhhhhHHH
Confidence 8999999999998 66766554433 44 3322221 11122332 222221100 000 11
Q ss_pred -HHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhC
Q 011963 418 -IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK 456 (474)
Q Consensus 418 -~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~ 456 (474)
..++.. +.. ..++||||||+..|+.++..|++.
T Consensus 234 ~~~il~~-i~~-----~~stLVFvNSR~~AE~La~~L~~~ 267 (1490)
T PRK09751 234 ETGILDE-VLR-----HRSTIVFTNSRGLAEKLTARLNEL 267 (1490)
T ss_pred HHHHHHH-Hhc-----CCCEEEECCCHHHHHHHHHHHHHh
Confidence 122222 222 458999999999999999999764
No 56
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.95 E-value=1.1e-27 Score=237.34 Aligned_cols=214 Identities=17% Similarity=0.164 Sum_probs=169.6
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcccC----CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCC
Q 011963 254 FTGPFLLFLVSSQEKAAKVRSVCKPLKAF----GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVS 329 (474)
Q Consensus 254 ~~~~~alil~PtreLa~Qi~~~~~~l~~~----~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~ 329 (474)
.+.|.+||+-|+||||.|++..+++++.+ .++...+.||...+.|...+.. |.+|+|+|||||.+++..+.+.++
T Consensus 284 pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~-g~~ivvGtpgRl~~~is~g~~~lt 362 (725)
T KOG0349|consen 284 PNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKD-GTHIVVGTPGRLLQPISKGLVTLT 362 (725)
T ss_pred CCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhc-CceeeecCchhhhhhhhccceeee
Confidence 46889999999999999999999888332 4677789999999999999999 899999999999999999999999
Q ss_pred CcceEEeccccccCC---hhHHHHHHhhCC------CCCcEEEEEccCCcc-HHHHHHHhhcCCceEEEccCCcccccCC
Q 011963 330 GVSLLVVDRLDSLSK---GDTLSLIRQSIS------GKPHTVVFNDCLTYT-SVPAVQNLLLGSINRLSLNQSVASQSAC 399 (474)
Q Consensus 330 ~l~~lViDEad~ll~---~~~l~~Il~~l~------~~~q~llfSAT~~~~-v~~l~~~~l~~p~~~v~v~~~~~~~~~~ 399 (474)
.++|||+||||.++. -+.+.++...+| ...|.+++|||+..- |..+..++|.-|. +|.+... ...+++
T Consensus 363 ~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfpt-wVdLkge-D~vpet 440 (725)
T KOG0349|consen 363 HCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPT-WVDLKGE-DLVPET 440 (725)
T ss_pred eeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCce-eEecccc-cccchh
Confidence 999999999999998 666777777775 468999999999865 8889999999998 8888765 566666
Q ss_pred cEEEEEEc-CCchhHHHHHHHHH---------------------------------HHHhhccCCCCCCcEEEEEccchh
Q 011963 400 IIQSVNVC-ASDEEKILKGIQVL---------------------------------DHAYGDHFHSEPLKVLYIVGKDSK 445 (474)
Q Consensus 400 i~q~~~~~-~~~~~K~~~l~~lL---------------------------------~~ll~~~~~~~~~k~LVF~~s~~~ 445 (474)
+.|.+..+ ++.+.-...|...| ...+..|. -.++||||.|+.+
T Consensus 441 vHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~---mdkaiifcrtk~d 517 (725)
T KOG0349|consen 441 VHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHA---MDKAIIFCRTKQD 517 (725)
T ss_pred hccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhc---cCceEEEEecccc
Confidence 76666543 32222222221111 13345555 6799999999999
Q ss_pred HHHHHHHHhhCCC---ccc--------chHHHHHHHhhc
Q 011963 446 FQNLVSTLKCKGY---SIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 446 a~~l~~~L~~~gi---~v~--------~~r~~~i~~Fk~ 473 (474)
|+.|-++|++.|= .|. .+|...++.|+.
T Consensus 518 cDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk 556 (725)
T KOG0349|consen 518 CDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK 556 (725)
T ss_pred chHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh
Confidence 9999999998754 222 566778888874
No 57
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.95 E-value=5e-26 Score=248.87 Aligned_cols=253 Identities=11% Similarity=0.082 Sum_probs=179.9
Q ss_pred HHHHHHHhCCCCccccCCCchhhHHHHHHHhcCC------cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcE
Q 011963 185 AIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAK------DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPF 258 (474)
Q Consensus 185 ~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~------dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ 258 (474)
.+...+...+| .||++ |.+||+.++.+. +.++++||| ||||++|++|++..+.. +.+
T Consensus 224 ~~~~~~~~lpf-~lt~~-----Q~~ai~~I~~~~~~~~~~~~Ll~g~TG-SGKT~va~l~il~~~~~----------g~q 286 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRA-----QKRVVKEILQDLKSDVPMNRLLQGDVG-SGKTLVAALAMLAAIEA----------GYQ 286 (630)
T ss_pred HHHHHHHhCCC-CCCHH-----HHHHHHHHHHHhccCCCccEEEECCCC-CcHHHHHHHHHHHHHHc----------CCc
Confidence 34556677899 69999 999999998872 689999999 99999999999987643 679
Q ss_pred EEEEeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHH---HHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceE
Q 011963 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDH---QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLL 334 (474)
Q Consensus 259 alil~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~---q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~l 334 (474)
++||+||++||.|+++.+..+ ..+|+++..++|+.+... +...+..+.++|||+||+++.+ .+.+.++.++
T Consensus 287 vlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lv 361 (630)
T TIGR00643 287 VALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALV 361 (630)
T ss_pred EEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceE
Confidence 999999999999999999997 667999999999988655 4556667679999999998753 4567899999
Q ss_pred EeccccccCChhHHHHHHhhCC--CCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchh
Q 011963 335 VVDRLDSLSKGDTLSLIRQSIS--GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEE 412 (474)
Q Consensus 335 ViDEad~ll~~~~l~~Il~~l~--~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~ 412 (474)
||||+|++.. .+...++.... ..+|+++||||..+....+ ....+.. ...+... ......+.+.++.. ..
T Consensus 362 VIDEaH~fg~-~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l--~~~~~l~-~~~i~~~-p~~r~~i~~~~~~~---~~ 433 (630)
T TIGR00643 362 IIDEQHRFGV-EQRKKLREKGQGGFTPHVLVMSATPIPRTLAL--TVYGDLD-TSIIDEL-PPGRKPITTVLIKH---DE 433 (630)
T ss_pred EEechhhccH-HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHH--HhcCCcc-eeeeccC-CCCCCceEEEEeCc---ch
Confidence 9999999864 22222333332 3689999999976643322 2222211 1111111 11122344444332 22
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcEEEEEccc--------hhHHHHHHHHhhC--CCccc--------chHHHHHHHhhc
Q 011963 413 KILKGIQVLDHAYGDHFHSEPLKVLYIVGKD--------SKFQNLVSTLKCK--GYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 413 K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~--------~~a~~l~~~L~~~--gi~v~--------~~r~~~i~~Fk~ 473 (474)
+ ..++..+...+.. +.+++|||++. ..++.+++.|... |++|. .+|+.++++|++
T Consensus 434 ~-~~~~~~i~~~l~~-----g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~ 506 (630)
T TIGR00643 434 K-DIVYEFIEEEIAK-----GRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFRE 506 (630)
T ss_pred H-HHHHHHHHHHHHh-----CCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 2 3344555544433 56999999876 4577888888753 66665 678899999985
No 58
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=7.2e-27 Score=212.87 Aligned_cols=159 Identities=23% Similarity=0.305 Sum_probs=137.2
Q ss_pred hhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhccc-CCc
Q 011963 206 WGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FGI 284 (474)
Q Consensus 206 ~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~-~~i 284 (474)
+|.++|+.+++|+|+++.|||| +|||++|++|++..+.... ..++||++|+++|+.|+++.+..+.. .++
T Consensus 3 ~Q~~~~~~i~~~~~~li~aptG-sGKT~~~~~~~l~~~~~~~--------~~~~lii~P~~~l~~q~~~~~~~~~~~~~~ 73 (169)
T PF00270_consen 3 LQQEAIEAIISGKNVLISAPTG-SGKTLAYILPALNRLQEGK--------DARVLIIVPTRALAEQQFERLRKFFSNTNV 73 (169)
T ss_dssp HHHHHHHHHHTTSEEEEECSTT-SSHHHHHHHHHHHHHHTTS--------SSEEEEEESSHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHcCCCEEEECCCC-CccHHHHHHHHHhhhccCC--------CceEEEEeeccccccccccccccccccccc
Confidence 3999999999999999999999 9999999999998887741 34999999999999999999999844 589
Q ss_pred EEEEEecCCCHH-HHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC---hhHHHHHHhhCC--CC
Q 011963 285 HTVSLHPGAAID-HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSIS--GK 358 (474)
Q Consensus 285 ~v~~~~gg~~~~-~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~--~~ 358 (474)
++..++|+.... .....+.. +++|+|+||++|.+++.....++.++.+|||||+|.+.+ ...+..|+..+. .+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~-~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~ 152 (169)
T PF00270_consen 74 RVVLLHGGQSISEDQREVLSN-QADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKN 152 (169)
T ss_dssp SEEEESTTSCHHHHHHHHHHT-TSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTT
T ss_pred ccccccccccccccccccccc-cccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCC
Confidence 999999999866 44555544 799999999999999998666888899999999999987 567888888873 36
Q ss_pred CcEEEEEccCCccHHH
Q 011963 359 PHTVVFNDCLTYTSVP 374 (474)
Q Consensus 359 ~q~llfSAT~~~~v~~ 374 (474)
.|++++|||++..++.
T Consensus 153 ~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 153 IQIILLSATLPSNVEK 168 (169)
T ss_dssp SEEEEEESSSTHHHHH
T ss_pred CcEEEEeeCCChhHhh
Confidence 9999999999965554
No 59
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.94 E-value=3.9e-25 Score=246.24 Aligned_cols=258 Identities=12% Similarity=0.154 Sum_probs=196.7
Q ss_pred hhHHhhhHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCC
Q 011963 176 SKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFT 255 (474)
Q Consensus 176 ~~~~~~l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~ 255 (474)
+.+..+....+..+|...|...+.+- |.+|+..+.+|+||||++||| ||||+||++|++++++..+
T Consensus 49 ~~~~~~~~~~l~~~l~~~g~~~lY~H-----Q~~A~~~~~~G~~vvVtTgTg-SGKTe~FllPIld~~l~~~-------- 114 (851)
T COG1205 49 SEFPELRDESLKSALVKAGIERLYSH-----QVDALRLIREGRNVVVTTGTG-SGKTESFLLPILDHLLRDP-------- 114 (851)
T ss_pred ccchhhhhhHHHHHHHHhccccccHH-----HHHHHHHHHCCCCEEEECCCC-CchhHHHHHHHHHHHhhCc--------
Confidence 34444466667888999999997755 999999999999999999999 9999999999999999864
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhc-ccCC--cEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcC----CCCC
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPL-KAFG--IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK----AIDV 328 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l-~~~~--i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~----~~~l 328 (474)
.-+||||.||++||....+.+..+ ..++ +.+....|+++..+......+ +|+||+++|.+|..++-.. .+.+
T Consensus 115 ~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~-pp~IllTNpdMLh~~llr~~~~~~~~~ 193 (851)
T COG1205 115 SARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRN-PPDILLTNPDMLHYLLLRNHDAWLWLL 193 (851)
T ss_pred CccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhC-CCCEEEeCHHHHHHHhccCcchHHHHH
Confidence 338999999999999999999998 5555 888888898887766555666 8999999999999855442 2457
Q ss_pred CCcceEEeccccccCC--hhHH-------HHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCC
Q 011963 329 SGVSLLVVDRLDSLSK--GDTL-------SLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSAC 399 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l-------~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~ 399 (474)
++++||||||+|..-. ..+| ..+++..+..+|+|..|||+.+ ..+++..+++.+. .+.++.. .....
T Consensus 194 ~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~n-p~e~~~~l~~~~f-~~~v~~~--g~~~~ 269 (851)
T COG1205 194 RNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLAN-PGEFAEELFGRDF-EVPVDED--GSPRG 269 (851)
T ss_pred hcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccC-hHHHHHHhcCCcc-eeeccCC--CCCCC
Confidence 8899999999999877 3333 3334444678999999999998 6778888888776 3434432 22333
Q ss_pred cEEEEEEcC-----C---chhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHH----HHHhhCC
Q 011963 400 IIQSVNVCA-----S---DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLV----STLKCKG 457 (474)
Q Consensus 400 i~q~~~~~~-----~---~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~----~~L~~~g 457 (474)
..+.+..-+ . ..+....+..++..++.+ +-++|+||.|+..|+.++ ..+...|
T Consensus 270 ~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~-----~~~tL~F~~sr~~~e~~~~~~~~~~~~~~ 334 (851)
T COG1205 270 LRYFVRREPPIRELAESIRRSALAELATLAALLVRN-----GIQTLVFFRSRKQVELLYLSPRRRLVREG 334 (851)
T ss_pred ceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHc-----CceEEEEEehhhhhhhhhhchhHHHhhcc
Confidence 444444333 0 124555555666666555 459999999999999998 5555555
No 60
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.94 E-value=1.3e-25 Score=243.82 Aligned_cols=242 Identities=10% Similarity=0.020 Sum_probs=175.3
Q ss_pred hhHHHHHHHhcCCcEEEEcCCCcchhHHH---------HHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHH
Q 011963 206 WGIEFWKCYSSAKDILETSGSSSTIVQIA---------WIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (474)
Q Consensus 206 ~Q~~~i~~~l~g~dvl~~A~TG~SGKTla---------f~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 276 (474)
.|.++++.++.|+|+|++|+|| ||||.+ |++|.+..+..-. ....+.+++|++||||||.|+...+
T Consensus 168 iQ~qil~~i~~gkdvIv~A~TG-SGKTtqvPq~l~~~~flf~~l~~l~~~~----~~~~~~~ilvt~PrreLa~qi~~~i 242 (675)
T PHA02653 168 VQLKIFEAWISRKPVVLTGGTG-VGKTSQVPKLLLWFNYLFGGFDNLDKID----PNFIERPIVLSLPRVALVRLHSITL 242 (675)
T ss_pred HHHHHHHHHHhCCCEEEECCCC-CCchhHHHHHHHHhhhccchhhhhhhcc----cccCCcEEEEECcHHHHHHHHHHHH
Confidence 4999999999999999999999 999997 6666666554211 0113568999999999999999988
Q ss_pred Hhc-cc--C-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-hhHHHHH
Q 011963 277 KPL-KA--F-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLI 351 (474)
Q Consensus 277 ~~l-~~--~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~-~~~l~~I 351 (474)
... +. . ++.+...+||.+. .+.....+ +.+|||+||+. ....++++++|||||||.+.. .+.+..+
T Consensus 243 ~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k-~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~~~~DllL~l 313 (675)
T PHA02653 243 LKSLGFDEIDGSPISLKYGSIPD-ELINTNPK-PYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHDQIGDIIIAV 313 (675)
T ss_pred HHHhCccccCCceEEEEECCcch-HHhhcccC-CCCEEEEeCcc-------cccccccCCEEEccccccCccchhHHHHH
Confidence 764 32 2 6788899999873 33333334 68999999862 123588999999999999988 7667677
Q ss_pred HhhCC-CCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCC---------chhHHHHHHHHH
Q 011963 352 RQSIS-GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCAS---------DEEKILKGIQVL 421 (474)
Q Consensus 352 l~~l~-~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~---------~~~K~~~l~~lL 421 (474)
+..+. ..+|+++||||++.++..+ ..++++|. .|.+.. .+...|++.++.... ...+.. +...+
T Consensus 314 lk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~-~I~I~g---rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~-~l~~L 387 (675)
T PHA02653 314 ARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPA-FVHIPG---GTLFPISEVYVKNKYNPKNKRAYIEEEKKN-IVTAL 387 (675)
T ss_pred HHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCc-EEEeCC---CcCCCeEEEEeecCcccccchhhhHHHHHH-HHHHH
Confidence 76553 4469999999999888777 57888887 677653 334567887764321 111221 22223
Q ss_pred HHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhC--CCccc------chHHHHHHHh
Q 011963 422 DHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK--GYSIS------TGSNCIVSHI 471 (474)
Q Consensus 422 ~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~--gi~v~------~~r~~~i~~F 471 (474)
..... .. .+++||||+++.+|+.++..|... |+.+. .++++.+++|
T Consensus 388 ~~~~~-~~---~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~eq~l~~f 441 (675)
T PHA02653 388 KKYTP-PK---GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNIDEILEKV 441 (675)
T ss_pred HHhhc-cc---CCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHHHHHHHH
Confidence 22211 12 468999999999999999999987 67665 4456777887
No 61
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.94 E-value=2.3e-25 Score=244.93 Aligned_cols=248 Identities=14% Similarity=0.129 Sum_probs=187.9
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHH-hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCY-SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLL 260 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~-l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~al 260 (474)
+.+.+.+.+...|+....|= |+.++... ..|+|+|+||||| ||||+..++.++..+... +.++|
T Consensus 16 ~~~~v~~i~~~~~~~el~~~-----qq~av~~~~~~~~N~li~aPTg-sGKTlIA~lai~~~l~~~---------~~k~v 80 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNP-----QQEAVEKGLLSDENVLISAPTG-SGKTLIALLAILSTLLEG---------GGKVV 80 (766)
T ss_pred ccHHHHHHhccCChHHhhHH-----HHHHhhccccCCCcEEEEcCCC-CchHHHHHHHHHHHHHhc---------CCcEE
Confidence 66777788888888766554 66666554 5569999999999 999999999999988873 56999
Q ss_pred EEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 261 FLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 261 il~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
||||+|+||.|++..++.+..+|++|...+|+..... ..+. +++|||+||+++-.++++...-+..|++|||||+|
T Consensus 81 YivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~--~~l~--~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH 156 (766)
T COG1204 81 YIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDD--ERLA--RYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIH 156 (766)
T ss_pred EEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccch--hhhc--cCCEEEEchHHhhHhhhcCcchhhcccEEEEeeee
Confidence 9999999999999999988888999999999988655 2333 58999999999988888877778899999999999
Q ss_pred ccCC---hhHHHHHHhhCC---CCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCch---
Q 011963 341 SLSK---GDTLSLIRQSIS---GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDE--- 411 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~---~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~--- 411 (474)
.+.+ .+.++.|+..+. ...|++.+|||+|+ ..+++.++-.++. .-......-.......+.++......
T Consensus 157 ~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~ 234 (766)
T COG1204 157 LLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTW 234 (766)
T ss_pred ecCCcccCceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccc
Confidence 9998 566666665553 34899999999999 7788887766554 21222110111122344444443222
Q ss_pred --hHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhh
Q 011963 412 --EKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKC 455 (474)
Q Consensus 412 --~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~ 455 (474)
.....++.++...+.. ++++||||+|+..+...|..|+.
T Consensus 235 ~~~~~~~~~~~v~~~~~~-----~~qvLvFv~sR~~a~~~A~~l~~ 275 (766)
T COG1204 235 PLLIDNLALELVLESLAE-----GGQVLVFVHSRKEAEKTAKKLRI 275 (766)
T ss_pred cccchHHHHHHHHHHHhc-----CCeEEEEEecCchHHHHHHHHHH
Confidence 1234444555555544 56999999999999999999984
No 62
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.93 E-value=9.2e-25 Score=223.20 Aligned_cols=263 Identities=13% Similarity=0.154 Sum_probs=206.4
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHH-HhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKC-YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLL 260 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~-~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~al 260 (474)
+++.+...|+.+||+.++|+ |..|+.. ++.|.|++++++|+ |||||.--|.-+..++. .+-.-|
T Consensus 201 ipe~fk~~lk~~G~~eLlPV-----Q~laVe~GLLeG~nllVVSaTa-sGKTLIgElAGi~~~l~---------~g~Kml 265 (830)
T COG1202 201 IPEKFKRMLKREGIEELLPV-----QVLAVEAGLLEGENLLVVSATA-SGKTLIGELAGIPRLLS---------GGKKML 265 (830)
T ss_pred CcHHHHHHHHhcCcceecch-----hhhhhhhccccCCceEEEeccC-CCcchHHHhhCcHHHHh---------CCCeEE
Confidence 88888999999999999999 9999988 68899999999999 99999999988888877 366889
Q ss_pred EEeccHHHHHHHHHHHHh-cccCCcEEEEEecCCCHHHHHH---HHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEe
Q 011963 261 FLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQIT---GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVV 336 (474)
Q Consensus 261 il~PtreLa~Qi~~~~~~-l~~~~i~v~~~~gg~~~~~q~~---~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lVi 336 (474)
+|+|..+||+|-|+.|+. +.++|+.+..-+|-.-+..... .-.....||||+|-+-+-.+++.+ -++.++..+||
T Consensus 266 fLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVI 344 (830)
T COG1202 266 FLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVI 344 (830)
T ss_pred EEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEe
Confidence 999999999999999988 5888998887777654443211 111125799999999987777766 77999999999
Q ss_pred ccccccCC---hhHHHHHH---hhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCc
Q 011963 337 DRLDSLSK---GDTLSLIR---QSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASD 410 (474)
Q Consensus 337 DEad~ll~---~~~l~~Il---~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~ 410 (474)
||+|.+-| ...+..++ +.+-+..|+|.+|||+.+ ..+++..+-..++ ..+ .-+-.++.++++|.++
T Consensus 345 DEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgN-p~elA~~l~a~lV---~y~----~RPVplErHlvf~~~e 416 (830)
T COG1202 345 DEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGN-PEELAKKLGAKLV---LYD----ERPVPLERHLVFARNE 416 (830)
T ss_pred eeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCC-hHHHHHHhCCeeE---eec----CCCCChhHeeeeecCc
Confidence 99999988 44444443 344568999999999998 6778887755443 222 2223588889999888
Q ss_pred hhHHHHHHHHHHHHh----hccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHh
Q 011963 411 EEKILKGIQVLDHAY----GDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHI 471 (474)
Q Consensus 411 ~~K~~~l~~lL~~ll----~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~F 471 (474)
.+|...+..+...-. ..+. .+++|||++|+..|+.|+..|...|+++. .+|..+-..|
T Consensus 417 ~eK~~ii~~L~k~E~~~~sskg~---rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F 486 (830)
T COG1202 417 SEKWDIIARLVKREFSTESSKGY---RGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAF 486 (830)
T ss_pred hHHHHHHHHHHHHHHhhhhccCc---CCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHH
Confidence 889965555554322 2233 68999999999999999999999999987 4555555555
No 63
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.93 E-value=4.9e-24 Score=236.63 Aligned_cols=235 Identities=11% Similarity=0.070 Sum_probs=174.2
Q ss_pred hHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh-c-ccCCc
Q 011963 207 GIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-L-KAFGI 284 (474)
Q Consensus 207 Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~-l-~~~~i 284 (474)
-.+.+..+..+.++|++|+|| ||||.+|.+|+++... .+.++||+.|||++|.|+...+.. + ...|.
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TG-SGKTT~vpl~lL~~~~----------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~ 75 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPG-AGKSTAVPLALLDAPG----------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQ 75 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCC-CCHHHHHHHHHHHhhc----------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc
Confidence 345556677788999999999 9999999999997652 245899999999999999998854 4 33477
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc-ccCC----hhHHHHHHhhCCCCC
Q 011963 285 HTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD-SLSK----GDTLSLIRQSISGKP 359 (474)
Q Consensus 285 ~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad-~ll~----~~~l~~Il~~l~~~~ 359 (474)
.|+..+++.. .... ..+|+|+|||+|++++.. ...++++++|||||+| ++++ ...+..+...++.+.
T Consensus 76 ~VGy~vr~~~------~~s~-~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dl 147 (819)
T TIGR01970 76 TVGYRVRGEN------KVSR-RTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDL 147 (819)
T ss_pred EEEEEEcccc------ccCC-CCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCc
Confidence 7777666643 2233 579999999999999876 4679999999999999 5776 234456667778899
Q ss_pred cEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHH-HHHHHHHHHHhhccCCCCCCcEEE
Q 011963 360 HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKI-LKGIQVLDHAYGDHFHSEPLKVLY 438 (474)
Q Consensus 360 q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~-~~l~~lL~~ll~~~~~~~~~k~LV 438 (474)
|+++||||++... ...|+.++. .|.+... ...|+++|..+.. .+++ ..+...+..++... .+.+||
T Consensus 148 qlIlmSATl~~~~---l~~~l~~~~-vI~~~gr----~~pVe~~y~~~~~-~~~~~~~v~~~l~~~l~~~----~g~iLV 214 (819)
T TIGR01970 148 KILAMSATLDGER---LSSLLPDAP-VVESEGR----SFPVEIRYLPLRG-DQRLEDAVSRAVEHALASE----TGSILV 214 (819)
T ss_pred eEEEEeCCCCHHH---HHHHcCCCc-EEEecCc----ceeeeeEEeecch-hhhHHHHHHHHHHHHHHhc----CCcEEE
Confidence 9999999999743 456777665 4555432 1247777776653 2232 22334455555432 578999
Q ss_pred EEccchhHHHHHHHHhh---CCCccc--------chHHHHHHHhhc
Q 011963 439 IVGKDSKFQNLVSTLKC---KGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 439 F~~s~~~a~~l~~~L~~---~gi~v~--------~~r~~~i~~Fk~ 473 (474)
||++..+++.++..|.. .++.+. .+++.+++.|++
T Consensus 215 Flpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~ 260 (819)
T TIGR01970 215 FLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ 260 (819)
T ss_pred EECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc
Confidence 99999999999999987 366664 467778888864
No 64
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.93 E-value=2.8e-24 Score=238.86 Aligned_cols=233 Identities=11% Similarity=0.068 Sum_probs=172.4
Q ss_pred HHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh-c-ccCCcEE
Q 011963 209 EFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-L-KAFGIHT 286 (474)
Q Consensus 209 ~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~-l-~~~~i~v 286 (474)
+.+..+.++++++++|||| ||||.+|.+|+++... ...++||+.|||++|.|+...+.. + ...|..+
T Consensus 12 ~i~~~l~~~~~vvv~A~TG-SGKTt~~pl~lL~~~~----------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTG-AGKSTWLPLQLLQHGG----------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHhCCCEEEEcCCC-CCHHHHHHHHHHHcCC----------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 4556667788999999999 9999999999996431 134899999999999999998855 4 3348888
Q ss_pred EEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccc-cCC----hhHHHHHHhhCCCCCcE
Q 011963 287 VSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-LSK----GDTLSLIRQSISGKPHT 361 (474)
Q Consensus 287 ~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~-ll~----~~~l~~Il~~l~~~~q~ 361 (474)
+..+++.... .. ..+|+|+|||+|++++.. ...++++.+|||||+|. .++ ...+..+++.++.+.|+
T Consensus 81 Gy~vr~~~~~------~~-~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lql 152 (812)
T PRK11664 81 GYRMRAESKV------GP-NTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKL 152 (812)
T ss_pred EEEecCcccc------CC-CCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceE
Confidence 8888775422 22 468999999999999876 46799999999999996 454 33445677778889999
Q ss_pred EEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHH-HHHHHHHHHhhccCCCCCCcEEEEE
Q 011963 362 VVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKIL-KGIQVLDHAYGDHFHSEPLKVLYIV 440 (474)
Q Consensus 362 llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~-~l~~lL~~ll~~~~~~~~~k~LVF~ 440 (474)
++||||++.. . ...++.++. .|.+... .-.|+++|+.++. .+++. .+...|..++... .+.+||||
T Consensus 153 ilmSATl~~~--~-l~~~~~~~~-~I~~~gr----~~pV~~~y~~~~~-~~~~~~~v~~~l~~~l~~~----~g~iLVFl 219 (812)
T PRK11664 153 LIMSATLDND--R-LQQLLPDAP-VIVSEGR----SFPVERRYQPLPA-HQRFDEAVARATAELLRQE----SGSLLLFL 219 (812)
T ss_pred EEEecCCCHH--H-HHHhcCCCC-EEEecCc----cccceEEeccCch-hhhHHHHHHHHHHHHHHhC----CCCEEEEc
Confidence 9999999864 2 356776665 4554432 1247788877753 33432 3334455555432 57999999
Q ss_pred ccchhHHHHHHHHhh---CCCccc--------chHHHHHHHhhc
Q 011963 441 GKDSKFQNLVSTLKC---KGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 441 ~s~~~a~~l~~~L~~---~gi~v~--------~~r~~~i~~Fk~ 473 (474)
++..+++.++..|.. .++.+. .+++.++..|++
T Consensus 220 pg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~ 263 (812)
T PRK11664 220 PGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA 263 (812)
T ss_pred CCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC
Confidence 999999999999987 466554 456677887764
No 65
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.93 E-value=1.1e-23 Score=215.51 Aligned_cols=233 Identities=10% Similarity=0.064 Sum_probs=159.1
Q ss_pred hhHHHHHHHhcCCc--EEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-cc-
Q 011963 206 WGIEFWKCYSSAKD--ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KA- 281 (474)
Q Consensus 206 ~Q~~~i~~~l~g~d--vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~- 281 (474)
||.++|+.+..+.+ ++++|||| ||||++|++|++. ....++|++||++|+.|+++.+..+ ..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTG-sGKT~~~~~~~l~-------------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~ 66 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTG-AGKTLAWLTPLLH-------------GENDTIALYPTNALIEDQTEAIKEFVDVF 66 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCC-CCHHHHHHHHHHH-------------cCCCEEEEeChHHHHHHHHHHHHHHHHhc
Confidence 59999999999984 78899999 9999999999983 1346899999999999999988886 22
Q ss_pred ---CCcEEEEEecCCCHH--HH-----------------HHHHhcCCCcEEEEChHHHHHHHHcC----CC----CCCCc
Q 011963 282 ---FGIHTVSLHPGAAID--HQ-----------------ITGLRSCEPEFLVSTPERLLKLVSLK----AI----DVSGV 331 (474)
Q Consensus 282 ---~~i~v~~~~gg~~~~--~q-----------------~~~l~~~~~~IlV~TP~rL~~ll~~~----~~----~l~~l 331 (474)
.++.+..+.|....+ .. ...+....|+|+++||+.|..++... .. .+.++
T Consensus 67 ~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~ 146 (357)
T TIGR03158 67 KPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKF 146 (357)
T ss_pred CCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCC
Confidence 256666666653222 00 01112226899999999998766531 11 25789
Q ss_pred ceEEeccccccCC--h------hHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHh--hcCCceEEEccC--Cc------
Q 011963 332 SLLVVDRLDSLSK--G------DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNL--LLGSINRLSLNQ--SV------ 393 (474)
Q Consensus 332 ~~lViDEad~ll~--~------~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~--l~~p~~~v~v~~--~~------ 393 (474)
.++||||+|.+.. . -.+..++.......+++++|||+++.+...+... ++.|. .+..+. ..
T Consensus 147 ~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~-~~v~g~~~~~~~~~~~ 225 (357)
T TIGR03158 147 STVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKI-APIDGEKYQFPDNPEL 225 (357)
T ss_pred CEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCcee-eeecCcccccCCChhh
Confidence 9999999999874 1 1333444444445899999999999877777765 55554 222222 00
Q ss_pred ---------ccccCCcEEEEEEcCCchhHHHHHHHHHH---HHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCC
Q 011963 394 ---------ASQSACIIQSVNVCASDEEKILKGIQVLD---HAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458 (474)
Q Consensus 394 ---------~~~~~~i~q~~~~~~~~~~K~~~l~~lL~---~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi 458 (474)
....+.+.+.++.. ...+...+..++. +.+.... +.++||||||+..|+.++..|+..|+
T Consensus 226 ~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~l~~l~~~i~~~~~~~~---~~k~LIf~nt~~~~~~l~~~L~~~~~ 297 (357)
T TIGR03158 226 EADNKTQSFRPVLPPVELELIPA--PDFKEEELSELAEEVIERFRQLP---GERGAIILDSLDEVNRLSDLLQQQGL 297 (357)
T ss_pred hccccccccceeccceEEEEEeC--CchhHHHHHHHHHHHHHHHhccC---CCeEEEEECCHHHHHHHHHHHhhhCC
Confidence 01113677766652 2334443333333 3333333 67999999999999999999998764
No 66
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.92 E-value=2.4e-24 Score=220.63 Aligned_cols=235 Identities=11% Similarity=0.056 Sum_probs=152.6
Q ss_pred cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHH--
Q 011963 219 DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAID-- 296 (474)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~-- 296 (474)
|++++|||| ||||++|++|++..+... .+.+++|++||++|+.|+++.+..+-+ -.++.++|+....
T Consensus 1 ~vvi~apTG-sGKT~~~~~~~l~~~~~~--------~~~~ii~v~P~~~L~~q~~~~l~~~f~--~~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 1 LLVIEAPTG-YGKTEAALLWALHSIKSQ--------KADRVIIALPTRATINAMYRRAKELFG--SNLGLLHSSSSFKRI 69 (358)
T ss_pred CEEEEeCCC-CCHHHHHHHHHHHHHhhC--------CCCeEEEEeehHHHHHHHHHHHHHHhC--cccEEeeccHHHHHH
Confidence 689999999 999999999999876542 356999999999999999999988621 1334444443211
Q ss_pred ----------HHHHHHhc-----CCCcEEEEChHHHHHHHHcCC----CCCC--CcceEEeccccccCC--hhHHHHHHh
Q 011963 297 ----------HQITGLRS-----CEPEFLVSTPERLLKLVSLKA----IDVS--GVSLLVVDRLDSLSK--GDTLSLIRQ 353 (474)
Q Consensus 297 ----------~q~~~l~~-----~~~~IlV~TP~rL~~ll~~~~----~~l~--~l~~lViDEad~ll~--~~~l~~Il~ 353 (474)
........ -..+|+|+||++++..+.... +.+. ..++|||||||++++ ...+..++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~ 149 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLE 149 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11111111 135799999999998766521 1111 237999999999998 445666666
Q ss_pred hCC-CCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcC-CchhHHHHHHHHHHHHhhccCCC
Q 011963 354 SIS-GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCA-SDEEKILKGIQVLDHAYGDHFHS 431 (474)
Q Consensus 354 ~l~-~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~-~~~~K~~~l~~lL~~ll~~~~~~ 431 (474)
.+. .+.|+++||||+|..+.+++..+...+. ....... .......+.+..+. ....+...+..++..+ .
T Consensus 150 ~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~----- 220 (358)
T TIGR01587 150 VLKDNDVPILLMSATLPKFLKEYAEKIGYVEF-NEPLDLK--EERRFERHRFIKIESDKVGEISSLERLLEFI-K----- 220 (358)
T ss_pred HHHHcCCCEEEEecCchHHHHHHHhcCCCccc-ccCCCCc--cccccccccceeeccccccCHHHHHHHHHHh-h-----
Confidence 664 5789999999999777666665543321 1111110 00011234443332 2234554444444322 1
Q ss_pred CCCcEEEEEccchhHHHHHHHHhhCCCc--cc--------chHHH----HHHHhhc
Q 011963 432 EPLKVLYIVGKDSKFQNLVSTLKCKGYS--IS--------TGSNC----IVSHIKN 473 (474)
Q Consensus 432 ~~~k~LVF~~s~~~a~~l~~~L~~~gi~--v~--------~~r~~----~i~~Fk~ 473 (474)
.+.++||||||++.|+.++..|...+.. +. .+|.. .+++|++
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~ 276 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK 276 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC
Confidence 2579999999999999999999887764 22 34543 4788875
No 67
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=3.1e-24 Score=226.38 Aligned_cols=247 Identities=15% Similarity=0.158 Sum_probs=181.4
Q ss_pred CCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHH
Q 011963 193 DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (474)
Q Consensus 193 ~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi 272 (474)
.||....|- |.++|..+++|+|+++..||| .||++||.||++-. .| .+|||+| |..-+
T Consensus 13 fGy~~FR~g-----Q~evI~~~l~g~d~lvvmPTG-gGKSlCyQiPAll~------------~G-~TLVVSP---LiSLM 70 (590)
T COG0514 13 FGYASFRPG-----QQEIIDALLSGKDTLVVMPTG-GGKSLCYQIPALLL------------EG-LTLVVSP---LISLM 70 (590)
T ss_pred hCccccCCC-----HHHHHHHHHcCCcEEEEccCC-CCcchHhhhHHHhc------------CC-CEEEECc---hHHHH
Confidence 388888888 999999999999999999999 79999999999932 13 7899999 66668
Q ss_pred HHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-----
Q 011963 273 RSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----- 344 (474)
Q Consensus 273 ~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~----- 344 (474)
.+++..+...|+.+.++.+..+..+. ...+..+..+||+-+|+||..---...+.-..+.++|||||||+.+
T Consensus 71 ~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdF 150 (590)
T COG0514 71 KDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDF 150 (590)
T ss_pred HHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCcc
Confidence 88888887779999999998775544 4455666699999999998642111122245678999999999998
Q ss_pred hhHHHH---HHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHH
Q 011963 345 GDTLSL---IRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVL 421 (474)
Q Consensus 345 ~~~l~~---Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL 421 (474)
++++.. +...+| +++++.||||.++.+...+...|.-....+.+. ....+||...+....+...++. .|
T Consensus 151 RP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~---sfdRpNi~~~v~~~~~~~~q~~----fi 222 (590)
T COG0514 151 RPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRG---SFDRPNLALKVVEKGEPSDQLA----FL 222 (590)
T ss_pred CHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe---cCCCchhhhhhhhcccHHHHHH----HH
Confidence 455544 555556 789999999999999988887765332112222 1233456555555432222331 22
Q ss_pred HHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 422 DHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 422 ~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
.. ...+. .+++||||.|++.|+.+++.|...|+++. .+|+..-+.|.+
T Consensus 223 ~~-~~~~~---~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~ 278 (590)
T COG0514 223 AT-VLPQL---SKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLN 278 (590)
T ss_pred Hh-hcccc---CCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhc
Confidence 22 11333 67899999999999999999999999987 566666666643
No 68
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=9.5e-24 Score=227.87 Aligned_cols=247 Identities=14% Similarity=0.137 Sum_probs=186.4
Q ss_pred CCCCccccCCCchhhHHHHHHHhcCC-cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHH
Q 011963 193 DGVEQDNPLFVNSWGIEFWKCYSSAK-DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAK 271 (474)
Q Consensus 193 ~g~~~ptpi~~~~~Q~~~i~~~l~g~-dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Q 271 (474)
.+|.....| |..++|.+.... |.|+||||| ||||..|+|.+|+.|..+............++||+|+++||..
T Consensus 106 f~f~~fN~i-----QS~vFp~aY~SneNMLIcAPTG-sGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~E 179 (1230)
T KOG0952|consen 106 FSFEEFNRI-----QSEVFPVAYKSNENMLICAPTG-SGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAE 179 (1230)
T ss_pred ccHHHHHHH-----HHHhhhhhhcCCCCEEEECCCC-CCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHH
Confidence 478888888 999999998765 999999999 9999999999999998754443444578999999999999999
Q ss_pred HHHHHHh-cccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCC----CCCCCcceEEeccccccCC--
Q 011963 272 VRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA----IDVSGVSLLVVDRLDSLSK-- 344 (474)
Q Consensus 272 i~~~~~~-l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~----~~l~~l~~lViDEad~ll~-- 344 (474)
+.+-+.+ |..+|++|..++|++...+.. +. .++|||+||+.. |.+.++. ..++.|++|||||+|.|-|
T Consensus 180 m~~~~~kkl~~~gi~v~ELTGD~ql~~te--i~--~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~R 254 (1230)
T KOG0952|consen 180 MVDKFSKKLAPLGISVRELTGDTQLTKTE--IA--DTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDDR 254 (1230)
T ss_pred HHHHHhhhcccccceEEEecCcchhhHHH--HH--hcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCcc
Confidence 9986655 788899999999998766533 33 479999999985 5554422 2367899999999999998
Q ss_pred hhHHHHHHhhC-------CCCCcEEEEEccCCccHHHHHHHhhcCC-ceEEEccCCcccccCCcEEEEEEcCCch--hH-
Q 011963 345 GDTLSLIRQSI-------SGKPHTVVFNDCLTYTSVPAVQNLLLGS-INRLSLNQSVASQSACIIQSVNVCASDE--EK- 413 (474)
Q Consensus 345 ~~~l~~Il~~l-------~~~~q~llfSAT~~~~v~~l~~~~l~~p-~~~v~v~~~~~~~~~~i~q~~~~~~~~~--~K- 413 (474)
.+.++.|+... -...+++++|||+|+ ..+++.++--+| .....++.. -.+-.+.|.++-+.... ..
T Consensus 255 GpvlEtiVaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~--yRPvpL~~~~iG~k~~~~~~~~ 331 (1230)
T KOG0952|consen 255 GPVLETIVARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQR--YRPVPLTQGFIGIKGKKNRQQK 331 (1230)
T ss_pred cchHHHHHHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeeccc--ccccceeeeEEeeecccchhhh
Confidence 66677666554 256789999999999 677777665554 323444443 22335888888776431 11
Q ss_pred ---HHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCC
Q 011963 414 ---ILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458 (474)
Q Consensus 414 ---~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi 458 (474)
....++-+..++.. +.++||||.++.++.+.|..|.+.+.
T Consensus 332 ~~~d~~~~~kv~e~~~~-----g~qVlvFvhsR~~Ti~tA~~l~~~a~ 374 (1230)
T KOG0952|consen 332 KNIDEVCYDKVVEFLQE-----GHQVLVFVHSRNETIRTAKKLRERAE 374 (1230)
T ss_pred hhHHHHHHHHHHHHHHc-----CCeEEEEEecChHHHHHHHHHHHHHH
Confidence 12333444455544 56999999999999999999976533
No 69
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=3.3e-23 Score=222.38 Aligned_cols=245 Identities=11% Similarity=0.059 Sum_probs=179.8
Q ss_pred ccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHH
Q 011963 197 QDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (474)
Q Consensus 197 ~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 276 (474)
.|||| |..++|.++.|+ |+.|.|| +|||++|.+|++..... +++++||+||++||.|.+.++
T Consensus 103 ~p~~V-----Q~~~~~~ll~G~--Iae~~TG-eGKTla~~lp~~~~al~----------G~~v~VvTptreLA~qdae~~ 164 (656)
T PRK12898 103 RHFDV-----QLMGGLALLSGR--LAEMQTG-EGKTLTATLPAGTAALA----------GLPVHVITVNDYLAERDAELM 164 (656)
T ss_pred CCChH-----HHHHHHHHhCCC--eeeeeCC-CCcHHHHHHHHHHHhhc----------CCeEEEEcCcHHHHHHHHHHH
Confidence 57899 999999999999 9999999 99999999999976543 779999999999999999999
Q ss_pred Hhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHH-HHHHHcCC-------------------------CCCC
Q 011963 277 KPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLKA-------------------------IDVS 329 (474)
Q Consensus 277 ~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL-~~ll~~~~-------------------------~~l~ 329 (474)
..+ ..+|+++++++||++.. ...+.. ++||+|+|...| .|+|+.+- ....
T Consensus 165 ~~l~~~lGlsv~~i~gg~~~~--~r~~~y-~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r 241 (656)
T PRK12898 165 RPLYEALGLTVGCVVEDQSPD--ERRAAY-GADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLR 241 (656)
T ss_pred HHHHhhcCCEEEEEeCCCCHH--HHHHHc-CCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccc
Confidence 998 66699999999998743 444555 799999999887 34443321 2246
Q ss_pred CcceEEeccccccC-C-------------hh---HH----HHHHhhC--------------------------------C
Q 011963 330 GVSLLVVDRLDSLS-K-------------GD---TL----SLIRQSI--------------------------------S 356 (474)
Q Consensus 330 ~l~~lViDEad~ll-~-------------~~---~l----~~Il~~l--------------------------------~ 356 (474)
.+.|.||||+|.+| | .. .+ ..+...+ +
T Consensus 242 ~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~ 321 (656)
T PRK12898 242 GLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLP 321 (656)
T ss_pred ccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcch
Confidence 68999999999876 2 11 00 0010000 0
Q ss_pred ------------------------C-------------------------------------------------------
Q 011963 357 ------------------------G------------------------------------------------------- 357 (474)
Q Consensus 357 ------------------------~------------------------------------------------------- 357 (474)
.
T Consensus 322 ~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~ 401 (656)
T PRK12898 322 PAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITY 401 (656)
T ss_pred hhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehH
Confidence 0
Q ss_pred ------CCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCC
Q 011963 358 ------KPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHS 431 (474)
Q Consensus 358 ------~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~ 431 (474)
-..+.+||||.+....++...|.-+++ .|..... ......+.+++++ ..+|...|..++..+...
T Consensus 402 q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv-~IPt~kp---~~r~~~~~~v~~t-~~~K~~aL~~~i~~~~~~---- 472 (656)
T PRK12898 402 QRFFRRYLRLAGMTGTAREVAGELWSVYGLPVV-RIPTNRP---SQRRHLPDEVFLT-AAAKWAAVAARVRELHAQ---- 472 (656)
T ss_pred HHHHHhhHHHhcccCcChHHHHHHHHHHCCCeE-EeCCCCC---ccceecCCEEEeC-HHHHHHHHHHHHHHHHhc----
Confidence 023466799998877777777766654 4544432 1223445566675 567987777777665322
Q ss_pred CCCcEEEEEccchhHHHHHHHHhhCCCccc------chHHHHHHHhh
Q 011963 432 EPLKVLYIVGKDSKFQNLVSTLKCKGYSIS------TGSNCIVSHIK 472 (474)
Q Consensus 432 ~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~------~~r~~~i~~Fk 472 (474)
+.++||||+|+..++.|+..|...|+++. .+++..+..|+
T Consensus 473 -~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE~~ii~~a 518 (656)
T PRK12898 473 -GRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAAIVARA 518 (656)
T ss_pred -CCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHHHHHHHHc
Confidence 45899999999999999999999999986 35555555554
No 70
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.91 E-value=7.9e-23 Score=218.24 Aligned_cols=242 Identities=10% Similarity=-0.002 Sum_probs=161.0
Q ss_pred hhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccC-C
Q 011963 205 SWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF-G 283 (474)
Q Consensus 205 ~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~-~ 283 (474)
+||.++++.++.+++.+++|||| +|||+++.+ ++..+... ...++|||+||++|+.|+.+.+..+... .
T Consensus 117 ~~Q~~av~~~l~~~~~il~apTG-sGKT~i~~~-l~~~~~~~--------~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~ 186 (501)
T PHA02558 117 WYQYDAVYEGLKNNRRLLNLPTS-AGKSLIQYL-LSRYYLEN--------YEGKVLIIVPTTSLVTQMIDDFVDYRLFPR 186 (501)
T ss_pred HHHHHHHHHHHhcCceEEEeCCC-CCHHHHHHH-HHHHHHhc--------CCCeEEEEECcHHHHHHHHHHHHHhccccc
Confidence 44999999999999999999999 999997653 22222221 2448999999999999999999987433 4
Q ss_pred cEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhCCCCCcEEE
Q 011963 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVV 363 (474)
Q Consensus 284 i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~ll 363 (474)
..+..++||.... . .++|+|+||++|..+.. ..++++.+|||||||++.. ..+..++..++..+|+++
T Consensus 187 ~~~~~i~~g~~~~-------~-~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~-~~~~~il~~~~~~~~~lG 254 (501)
T PHA02558 187 EAMHKIYSGTAKD-------T-DAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTG-KSLTSIITKLDNCKFKFG 254 (501)
T ss_pred cceeEEecCcccC-------C-CCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccc-hhHHHHHHhhhccceEEE
Confidence 4566677775432 2 57999999999976532 2467899999999999985 557788888877789999
Q ss_pred EEccCCccHHHHH--HHhhcCCceEEEccCCc-ccccCCcEEEEEE----------------------cCCchhHHHHHH
Q 011963 364 FNDCLTYTSVPAV--QNLLLGSINRLSLNQSV-ASQSACIIQSVNV----------------------CASDEEKILKGI 418 (474)
Q Consensus 364 fSAT~~~~v~~l~--~~~l~~p~~~v~v~~~~-~~~~~~i~q~~~~----------------------~~~~~~K~~~l~ 418 (474)
||||++....... ..++++....+...... ......+....+. ..+...+...+.
T Consensus 255 LTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~ 334 (501)
T PHA02558 255 LTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIA 334 (501)
T ss_pred EeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHH
Confidence 9999976432211 11223221111111000 0000001100001 111223443344
Q ss_pred HHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 419 ~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
.++..+... +.++||||++.+.|+.|++.|+..|+++. .+|+..++.|++
T Consensus 335 ~~~~~~~~~-----~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~ 392 (501)
T PHA02558 335 NLALKLAKK-----GENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEG 392 (501)
T ss_pred HHHHHHHhc-----CCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhC
Confidence 444443322 56899999999999999999999999875 577777888764
No 71
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=2e-23 Score=227.95 Aligned_cols=144 Identities=10% Similarity=0.181 Sum_probs=126.0
Q ss_pred hHHHHHHHHH-----hCCCCcc---ccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCC
Q 011963 182 CLNAIENAMR-----HDGVEQD---NPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFS 253 (474)
Q Consensus 182 l~~~i~~~l~-----~~g~~~p---tpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~ 253 (474)
+.+.+...+. .+||..| ||+ |.++||.++.++|+++.|+|| ||||+||+||++..++..
T Consensus 69 l~re~~~r~lg~~~~~~G~~~p~~~tp~-----qvQ~I~~i~l~~gvIAeaqTG-eGKTLAf~LP~l~~aL~g------- 135 (970)
T PRK12899 69 VVKNVCRRLAGTPVEVSGYHQQWDMVPY-----DVQILGAIAMHKGFITEMQTG-EGKTLTAVMPLYLNALTG------- 135 (970)
T ss_pred CCHHHHHHHhccccccccccCCCCCChH-----HHHHhhhhhcCCCeEEEeCCC-CChHHHHHHHHHHHHhhc-------
Confidence 4555555554 6899999 888 999999999999999999999 999999999999887642
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHH-HHHHHcCCCCCC--
Q 011963 254 FTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLKAIDVS-- 329 (474)
Q Consensus 254 ~~~~~alil~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL-~~ll~~~~~~l~-- 329 (474)
..++||+||++||.|++.++..+ ..+|+++++++||.+...+...+ +|||+||||||| .++++.+.+.++
T Consensus 136 ---~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y---~~DIVygTPgRLgfDyLrd~~~~~~~~ 209 (970)
T PRK12899 136 ---KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY---QCDVVYGTASEFGFDYLRDNSIATRKE 209 (970)
T ss_pred ---CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc---CCCEEEECCChhHHHHhhCCCCCcCHH
Confidence 24899999999999999999999 55699999999999999887655 489999999999 999999877766
Q ss_pred -----CcceEEeccccccCC
Q 011963 330 -----GVSLLVVDRLDSLSK 344 (474)
Q Consensus 330 -----~l~~lViDEad~ll~ 344 (474)
.+.++||||||.||-
T Consensus 210 ~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 210 EQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred HhhcccccEEEEechhhhhh
Confidence 458999999999985
No 72
>PRK13766 Hef nuclease; Provisional
Probab=99.89 E-value=2e-21 Score=218.12 Aligned_cols=165 Identities=11% Similarity=0.052 Sum_probs=133.4
Q ss_pred CCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHH
Q 011963 193 DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (474)
Q Consensus 193 ~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi 272 (474)
..+-.|+.++.++||..++..++.+ |+|+++||| +|||++|++++...+.. .+.++|||+||++|+.|+
T Consensus 6 ~~~~~~~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG-~GKT~~a~~~i~~~l~~---------~~~~vLvl~Pt~~L~~Q~ 74 (773)
T PRK13766 6 HPLIKPNTIEARLYQQLLAATALKK-NTLVVLPTG-LGKTAIALLVIAERLHK---------KGGKVLILAPTKPLVEQH 74 (773)
T ss_pred CCccCcCcCCccHHHHHHHHHHhcC-CeEEEcCCC-ccHHHHHHHHHHHHHHh---------CCCeEEEEeCcHHHHHHH
Confidence 4667788888999999999998887 999999999 99999999999887732 356999999999999999
Q ss_pred HHHHHhcccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC---hhHH
Q 011963 273 RSVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTL 348 (474)
Q Consensus 273 ~~~~~~l~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~---~~~l 348 (474)
...++.+... +..++.++|+.+..... .+.. +++|+|+||+.+...+..+.+.+.++.+|||||||++.. ...+
T Consensus 75 ~~~~~~~~~~~~~~v~~~~g~~~~~~r~-~~~~-~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i 152 (773)
T PRK13766 75 AEFFRKFLNIPEEKIVVFTGEVSPEKRA-ELWE-KAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYI 152 (773)
T ss_pred HHHHHHHhCCCCceEEEEeCCCCHHHHH-HHHh-CCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHH
Confidence 9999987333 56788888888766433 3333 579999999999888877888899999999999999987 3333
Q ss_pred HHHHhhCCCCCcEEEEEccCCc
Q 011963 349 SLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 349 ~~Il~~l~~~~q~llfSAT~~~ 370 (474)
...+......+++++||||...
T Consensus 153 ~~~~~~~~~~~~il~lTaTP~~ 174 (773)
T PRK13766 153 AERYHEDAKNPLVLGLTASPGS 174 (773)
T ss_pred HHHHHhcCCCCEEEEEEcCCCC
Confidence 3444344556789999999643
No 73
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.89 E-value=9.9e-22 Score=212.28 Aligned_cols=129 Identities=9% Similarity=0.077 Sum_probs=110.1
Q ss_pred CCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHH
Q 011963 194 GVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (474)
Q Consensus 194 g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~ 273 (474)
|. .|+++ |..+++.++.|+ |+.++|| +|||++|.+|++-..+. |.+++|++||++||.|.+
T Consensus 54 g~-~p~~v-----Qlig~~~l~~G~--Iaem~TG-eGKTLva~lpa~l~aL~----------G~~V~VvTpt~~LA~qda 114 (745)
T TIGR00963 54 GM-RPFDV-----QLIGGIALHKGK--IAEMKTG-EGKTLTATLPAYLNALT----------GKGVHVVTVNDYLAQRDA 114 (745)
T ss_pred CC-Cccch-----HHhhhhhhcCCc--eeeecCC-CccHHHHHHHHHHHHHh----------CCCEEEEcCCHHHHHHHH
Confidence 44 57888 999999998887 9999999 99999999999644443 447999999999999999
Q ss_pred HHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHH-HHHHHcC------CCCCCCcceEEeccccccCC
Q 011963 274 SVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLK------AIDVSGVSLLVVDRLDSLSK 344 (474)
Q Consensus 274 ~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL-~~ll~~~------~~~l~~l~~lViDEad~ll~ 344 (474)
.++..+ ..+|+++++++||.+...+...+ .++|+||||++| .++++.+ .+.+.++.++||||+|+|+-
T Consensus 115 e~~~~l~~~LGLsv~~i~g~~~~~~r~~~y---~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 115 EWMGQVYRFLGLSVGLILSGMSPEERREAY---ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred HHHHHHhccCCCeEEEEeCCCCHHHHHHhc---CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 999998 66699999999999876544433 479999999999 8998876 35789999999999999974
No 74
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.88 E-value=5.7e-22 Score=194.05 Aligned_cols=258 Identities=13% Similarity=0.158 Sum_probs=192.3
Q ss_pred ccccCCChhHHhhhHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhh
Q 011963 169 CEKLDCPSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKE 248 (474)
Q Consensus 169 ~~~~~~p~~~~~~l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~ 248 (474)
+...++|+.-. ...-+.+.+ ..+...|+ |..+|...+.|.|++++.||| -||+|||.||+|.
T Consensus 71 wdkd~fpws~e--~~~ilk~~f---~lekfrpl-----q~~ain~~ma~ed~~lil~tg-ggkslcyqlpal~------- 132 (695)
T KOG0353|consen 71 WDKDDFPWSDE--AKDILKEQF---HLEKFRPL-----QLAAINATMAGEDAFLILPTG-GGKSLCYQLPALC------- 132 (695)
T ss_pred cccCCCCCchH--HHHHHHHHh---hHHhcChh-----HHHHhhhhhccCceEEEEeCC-CccchhhhhhHHh-------
Confidence 45556665432 222222222 44566677 999999999999999999999 5999999999993
Q ss_pred hcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHH---HHh--cCCCcEEEEChHHHHH---H
Q 011963 249 KEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQIT---GLR--SCEPEFLVSTPERLLK---L 320 (474)
Q Consensus 249 ~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~---~l~--~~~~~IlV~TP~rL~~---l 320 (474)
....+|||+| |..-+.+++..|+.+||...++...++.++..+ .+. ...+.+|..||+.+.. +
T Consensus 133 ------adg~alvi~p---lislmedqil~lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~ 203 (695)
T KOG0353|consen 133 ------ADGFALVICP---LISLMEDQILQLKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKF 203 (695)
T ss_pred ------cCCceEeech---hHHHHHHHHHHHHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHH
Confidence 3458999999 777788888888888999999988877554322 111 1257899999999974 4
Q ss_pred HHc--CCCCCCCcceEEeccccccCC-----hhHHH--HHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccC
Q 011963 321 VSL--KAIDVSGVSLLVVDRLDSLSK-----GDTLS--LIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQ 391 (474)
Q Consensus 321 l~~--~~~~l~~l~~lViDEad~ll~-----~~~l~--~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~ 391 (474)
|+. +.+....+.++.|||+||... ++++. .|++..-+...+++++||.++.|...++.+|.... .+.+..
T Consensus 204 mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~-~~tf~a 282 (695)
T KOG0353|consen 204 MNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEA-AFTFRA 282 (695)
T ss_pred HHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHh-hheeec
Confidence 443 667777889999999999987 44444 36666667889999999999999999999887654 455544
Q ss_pred CcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc
Q 011963 392 SVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS 461 (474)
Q Consensus 392 ~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~ 461 (474)
. -..+++...+..-++.+ ..+.+-+..+++... .++..||||-|+++|+.++..|+.+||.+.
T Consensus 283 ~--fnr~nl~yev~qkp~n~---dd~~edi~k~i~~~f--~gqsgiiyc~sq~d~ekva~alkn~gi~a~ 345 (695)
T KOG0353|consen 283 G--FNRPNLKYEVRQKPGNE---DDCIEDIAKLIKGDF--AGQSGIIYCFSQKDCEKVAKALKNHGIHAG 345 (695)
T ss_pred c--cCCCCceeEeeeCCCCh---HHHHHHHHHHhcccc--CCCcceEEEeccccHHHHHHHHHhcCcccc
Confidence 3 33456777777665433 223355566666554 478999999999999999999999999876
No 75
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=3.1e-21 Score=211.32 Aligned_cols=129 Identities=8% Similarity=0.060 Sum_probs=109.1
Q ss_pred CCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHH
Q 011963 194 GVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (474)
Q Consensus 194 g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~ 273 (474)
|. .|+++ |..+++.++.|+ |+.|.|| +|||++|++|++...+. |.+++|++||++||.|.+
T Consensus 76 g~-~p~~v-----Ql~~~~~l~~G~--Iaem~TG-eGKTL~a~lp~~l~al~----------G~~v~VvTpt~~LA~qd~ 136 (790)
T PRK09200 76 GM-RPYDV-----QLIGALVLHEGN--IAEMQTG-EGKTLTATMPLYLNALE----------GKGVHLITVNDYLAKRDA 136 (790)
T ss_pred CC-CCchH-----HHHhHHHHcCCc--eeeecCC-CcchHHHHHHHHHHHHc----------CCCeEEEeCCHHHHHHHH
Confidence 66 78888 999999999998 9999999 99999999999965553 779999999999999999
Q ss_pred HHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHH-HHHHHcC------CCCCCCcceEEeccccccC
Q 011963 274 SVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLK------AIDVSGVSLLVVDRLDSLS 343 (474)
Q Consensus 274 ~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL-~~ll~~~------~~~l~~l~~lViDEad~ll 343 (474)
.++..+ ..+|+++++++||.+...+... .. ++||+||||++| .|+|... ...+..+.|+||||||+|+
T Consensus 137 e~~~~l~~~lGl~v~~i~g~~~~~~~r~~-~y-~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 137 EEMGQVYEFLGLTVGLNFSDIDDASEKKA-IY-EADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred HHHHHHHhhcCCeEEEEeCCCCcHHHHHH-hc-CCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 999998 6669999999999984333333 33 689999999999 5555442 2456889999999999987
No 76
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.88 E-value=4e-21 Score=208.78 Aligned_cols=126 Identities=9% Similarity=0.072 Sum_probs=97.3
Q ss_pred hHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccCCcE
Q 011963 207 GIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIH 285 (474)
Q Consensus 207 Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~~i~ 285 (474)
|.++++.+...+..|+.++|| +|||++|++|++...+. +..++||+||++||.|.+.++..+ ..+|+.
T Consensus 73 dVQlig~l~l~~G~Iaem~TG-eGKTLta~Lpa~l~aL~----------g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLs 141 (762)
T TIGR03714 73 DVQVLGAIVLHQGNIAEMKTG-EGKTLTATMPLYLNALT----------GKGAMLVTTNDYLAKRDAEEMGPVYEWLGLT 141 (762)
T ss_pred HHHHHHHHHhcCCceeEecCC-cchHHHHHHHHHHHhhc----------CCceEEeCCCHHHHHHHHHHHHHHHhhcCCc
Confidence 444554444444479999999 99999999998765553 457999999999999999999998 666999
Q ss_pred EEEEecCCC---HHHHHHHHhcCCCcEEEEChHHH-HHHHHc------CCCCCCCcceEEeccccccCC
Q 011963 286 TVSLHPGAA---IDHQITGLRSCEPEFLVSTPERL-LKLVSL------KAIDVSGVSLLVVDRLDSLSK 344 (474)
Q Consensus 286 v~~~~gg~~---~~~q~~~l~~~~~~IlV~TP~rL-~~ll~~------~~~~l~~l~~lViDEad~ll~ 344 (474)
+.+++++.. +..+...... +++|+||||++| .+++.. ....+.++.++||||||.||-
T Consensus 142 v~~~~~~s~~~~~~~~~rr~~y-~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILi 209 (762)
T TIGR03714 142 VSLGVVDDPDEEYDANEKRKIY-NSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLL 209 (762)
T ss_pred EEEEECCCCccccCHHHHHHhC-CCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhh
Confidence 998887632 3333344444 799999999999 455532 245678999999999999964
No 77
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.86 E-value=1e-20 Score=210.19 Aligned_cols=249 Identities=14% Similarity=0.093 Sum_probs=183.5
Q ss_pred HHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHH
Q 011963 190 MRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (474)
Q Consensus 190 l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa 269 (474)
....|+....|- |.++|..++.|+|+++.+||| .||+|||.||++ ..+..+|||+| |.
T Consensus 257 ~~~Fg~~~FR~~-----Q~eaI~~~l~Gkd~fvlmpTG-~GKSLCYQlPA~-------------l~~gitvVISP---L~ 314 (941)
T KOG0351|consen 257 KEVFGHKGFRPN-----QLEAINATLSGKDCFVLMPTG-GGKSLCYQLPAL-------------LLGGVTVVISP---LI 314 (941)
T ss_pred HHHhccccCChh-----HHHHHHHHHcCCceEEEeecC-CceeeEeecccc-------------ccCCceEEecc---HH
Confidence 334477777777 999999999999999999999 799999999998 23558999999 66
Q ss_pred HHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcC--CCcEEEEChHHHHHH--HHcCCCCCCC---cceEEeccc
Q 011963 270 AKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSC--EPEFLVSTPERLLKL--VSLKAIDVSG---VSLLVVDRL 339 (474)
Q Consensus 270 ~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~--~~~IlV~TP~rL~~l--l~~~~~~l~~---l~~lViDEa 339 (474)
.-|.+++..|...+|....+.++.....+ .+.+..+ .++||..||+.+... +.....++.. +.++|||||
T Consensus 315 SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEA 394 (941)
T KOG0351|consen 315 SLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEA 394 (941)
T ss_pred HHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHH
Confidence 66888888887789999999999887644 4555565 689999999998753 2223344444 899999999
Q ss_pred cccCC-----hhHHHH---HHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCch
Q 011963 340 DSLSK-----GDTLSL---IRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDE 411 (474)
Q Consensus 340 d~ll~-----~~~l~~---Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~ 411 (474)
||+.. ++.+.. +....+. .++|.+|||.+..|.+.+-..|+-+. ...+... -..+|+...+..=..
T Consensus 395 HCVSqWgHdFRp~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~-~~~~~~s--fnR~NL~yeV~~k~~-- 468 (941)
T KOG0351|consen 395 HCVSQWGHDFRPSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRN-PELFKSS--FNRPNLKYEVSPKTD-- 468 (941)
T ss_pred HHhhhhcccccHHHHHHHHHHhhCCC-CCeEEeehhccHHHHHHHHHHhCCCC-cceeccc--CCCCCceEEEEeccC--
Confidence 99998 555554 4444454 89999999999999888877765443 1222222 234456555553321
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHh
Q 011963 412 EKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHI 471 (474)
Q Consensus 412 ~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~F 471 (474)
+ ..+..++...-..+. ...+||||.++.+|+.++..|+..|+.+. .+|..+-.+|
T Consensus 469 -~-~~~~~~~~~~~~~~~---~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w 531 (941)
T KOG0351|consen 469 -K-DALLDILEESKLRHP---DQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAW 531 (941)
T ss_pred -c-cchHHHHHHhhhcCC---CCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHH
Confidence 1 222244444444455 88999999999999999999999997766 5566555554
No 78
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=2.1e-20 Score=204.62 Aligned_cols=122 Identities=11% Similarity=0.148 Sum_probs=103.2
Q ss_pred hHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccCCcE
Q 011963 207 GIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIH 285 (474)
Q Consensus 207 Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~~i~ 285 (474)
|.-.--.+..|+ |+.|+|| +|||++|.+|++..++. +..++||+||++||.|.+.++..+ ..+|++
T Consensus 87 QliGg~~Lh~G~--Iaem~TG-eGKTL~a~Lpa~~~al~----------G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLt 153 (896)
T PRK13104 87 QLIGGMVLHEGN--IAEMRTG-EGKTLVATLPAYLNAIS----------GRGVHIVTVNDYLAKRDSQWMKPIYEFLGLT 153 (896)
T ss_pred HHhhhhhhccCc--cccccCC-CCchHHHHHHHHHHHhc----------CCCEEEEcCCHHHHHHHHHHHHHHhcccCce
Confidence 766655555555 8999999 99999999999977754 446999999999999999999998 556999
Q ss_pred EEEEecCCCHHHHHHHHhcCCCcEEEEChHHH-HHHHHcC-CCCC-----CCcceEEeccccccCC
Q 011963 286 TVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLK-AIDV-----SGVSLLVVDRLDSLSK 344 (474)
Q Consensus 286 v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL-~~ll~~~-~~~l-----~~l~~lViDEad~ll~ 344 (474)
+.+++||.+...+...+ .+||+||||++| .|+|+.+ .+++ ..+.|+||||||.||=
T Consensus 154 v~~i~gg~~~~~r~~~y---~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLI 216 (896)
T PRK13104 154 VGVIYPDMSHKEKQEAY---KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILI 216 (896)
T ss_pred EEEEeCCCCHHHHHHHh---CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhh
Confidence 99999999887765444 589999999999 9999876 4555 5899999999999873
No 79
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.84 E-value=6.8e-19 Score=193.69 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=118.2
Q ss_pred CCchhhHHHHHHHhcC---CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh
Q 011963 202 FVNSWGIEFWKCYSSA---KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (474)
Q Consensus 202 ~~~~~Q~~~i~~~l~g---~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 278 (474)
..++.|.++++.+..+ +++++.+||| ||||.+|+.++...+.. +.++|||+||++|+.|+++.++.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TG-SGKT~v~l~~i~~~l~~----------g~~vLvLvPt~~L~~Q~~~~l~~ 212 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTG-SGKTEVYLQAIAEVLAQ----------GKQALVLVPEIALTPQMLARFRA 212 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCC-ChHHHHHHHHHHHHHHc----------CCeEEEEeCcHHHHHHHHHHHHH
Confidence 3456699999999985 7999999999 99999998887765543 56899999999999999998876
Q ss_pred cccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC------hhHHH
Q 011963 279 LKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK------GDTLS 349 (474)
Q Consensus 279 l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~------~~~l~ 349 (474)
. +|..+..++|+.+...+ +..+..+.++|||+||+++. ..++++.+|||||+|...- .-+..
T Consensus 213 ~--fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r 283 (679)
T PRK05580 213 R--FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHAR 283 (679)
T ss_pred H--hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHH
Confidence 3 36789999999876544 33445557999999999874 4578899999999998764 11122
Q ss_pred H--HHhhCCCCCcEEEEEccCCccHH
Q 011963 350 L--IRQSISGKPHTVVFNDCLTYTSV 373 (474)
Q Consensus 350 ~--Il~~l~~~~q~llfSAT~~~~v~ 373 (474)
. ++.....+.|++++|||.+.+..
T Consensus 284 ~va~~ra~~~~~~~il~SATps~~s~ 309 (679)
T PRK05580 284 DLAVVRAKLENIPVVLGSATPSLESL 309 (679)
T ss_pred HHHHHHhhccCCCEEEEcCCCCHHHH
Confidence 2 33344578999999999765433
No 80
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.83 E-value=3.1e-19 Score=164.61 Aligned_cols=183 Identities=22% Similarity=0.296 Sum_probs=150.9
Q ss_pred CCCCccccCCCchhhHHHHHHHhcC-CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHH
Q 011963 193 DGVEQDNPLFVNSWGIEFWKCYSSA-KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAK 271 (474)
Q Consensus 193 ~g~~~ptpi~~~~~Q~~~i~~~l~g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Q 271 (474)
.++..++|. |.++++.++.+ +.+++++||| ||||.+++.+++..+.... ...+||++||+.++.|
T Consensus 4 ~~~~~~~~~-----Q~~~~~~~~~~~~~~~i~~~~G-sGKT~~~~~~~~~~~~~~~--------~~~~l~~~p~~~~~~~ 69 (201)
T smart00487 4 FGFEPLRPY-----QKEAIEALLSGLRDVILAAPTG-SGKTLAALLPALEALKRGK--------GKRVLVLVPTRELAEQ 69 (201)
T ss_pred cCCCCCCHH-----HHHHHHHHHcCCCcEEEECCCC-CchhHHHHHHHHHHhcccC--------CCcEEEEeCCHHHHHH
Confidence 466677766 99999999999 9999999999 9999999999998776532 3479999999999999
Q ss_pred HHHHHHhccc-CCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC---hhH
Q 011963 272 VRSVCKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDT 347 (474)
Q Consensus 272 i~~~~~~l~~-~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~---~~~ 347 (474)
+...+..+.. .........++.........+.....+|+++||+++.+.+.........+.++||||+|.+.. ...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~ 149 (201)
T smart00487 70 WAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQ 149 (201)
T ss_pred HHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHH
Confidence 9999988733 233555666666656666667663349999999999999988777888899999999999994 788
Q ss_pred HHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEcc
Q 011963 348 LSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLN 390 (474)
Q Consensus 348 l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~ 390 (474)
+..++..++...+++++|||.+..+...+..++.... .+...
T Consensus 150 ~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~-~~~~~ 191 (201)
T smart00487 150 LEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPV-FIDVG 191 (201)
T ss_pred HHHHHHhCCccceEEEEecCCchhHHHHHHHhcCCCE-EEeCC
Confidence 8888888888899999999999988888888887654 55544
No 81
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.83 E-value=3.1e-20 Score=184.47 Aligned_cols=248 Identities=12% Similarity=0.091 Sum_probs=165.0
Q ss_pred HHHHHHhC-CCCcc-ccCCCchhhHHHHHHHhcCC-cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEE
Q 011963 186 IENAMRHD-GVEQD-NPLFVNSWGIEFWKCYSSAK-DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (474)
Q Consensus 186 i~~~l~~~-g~~~p-tpi~~~~~Q~~~i~~~l~g~-dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil 262 (474)
+.++|++. ||... ||+ |.+|+.++..++ ||.|++||| +||+|||.||+|. .+..+||+
T Consensus 7 VreaLKK~FGh~kFKs~L-----QE~A~~c~VK~k~DVyVsMPTG-aGKSLCyQLPaL~-------------~~gITIV~ 67 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRL-----QEQAINCIVKRKCDVYVSMPTG-AGKSLCYQLPALV-------------HGGITIVI 67 (641)
T ss_pred HHHHHHHHhCchhhcChH-----HHHHHHHHHhccCcEEEeccCC-CchhhhhhchHHH-------------hCCeEEEe
Confidence 34455443 55432 455 999999999886 999999999 9999999999992 24489999
Q ss_pred eccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHH---HHhcC--CCcEEEEChHHHH-----HHHHcCCCCCCCcc
Q 011963 263 VSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQIT---GLRSC--EPEFLVSTPERLL-----KLVSLKAIDVSGVS 332 (474)
Q Consensus 263 ~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~---~l~~~--~~~IlV~TP~rL~-----~ll~~~~~~l~~l~ 332 (474)
+|.-+| |.+++..|..+.+++-++.+..+..+..+ .|... ...||.-||+... ++|+. ..+-.-|.
T Consensus 68 SPLiAL---IkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~-L~~r~~L~ 143 (641)
T KOG0352|consen 68 SPLIAL---IKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG-LANRDVLR 143 (641)
T ss_pred hHHHHH---HHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH-Hhhhceee
Confidence 995555 55666666555778888887776554433 33322 4579999999754 23322 22223478
Q ss_pred eEEeccccccCC-----hhHHHH---HHhhCCCCCcEEEEEccCCccHHHHHHH--hhcCCceEEEccCCcccccCCcEE
Q 011963 333 LLVVDRLDSLSK-----GDTLSL---IRQSISGKPHTVVFNDCLTYTSVPAVQN--LLLGSINRLSLNQSVASQSACIIQ 402 (474)
Q Consensus 333 ~lViDEad~ll~-----~~~l~~---Il~~l~~~~q~llfSAT~~~~v~~l~~~--~l~~p~~~v~v~~~~~~~~~~i~q 402 (474)
|||+|||||+.. ++++.. +.+.+ +....+.++||.++.|.+.+-. -|++|+ .|--++. -..|+-.
T Consensus 144 Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PV-AiFkTP~---FR~NLFY 218 (641)
T KOG0352|consen 144 YIVVDEAHCVSQWGHDFRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPV-AIFKTPT---FRDNLFY 218 (641)
T ss_pred eEEechhhhHhhhccccCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcH-HhccCcc---hhhhhhH
Confidence 999999999988 555554 34444 4678899999999998875543 467887 3333322 1122222
Q ss_pred EEEEcCCchhHHHHHHHHHHHHhhcc------CCCCCCcEEEEEccchhHHHHHHHHhhCCCccc
Q 011963 403 SVNVCASDEEKILKGIQVLDHAYGDH------FHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS 461 (474)
Q Consensus 403 ~~~~~~~~~~K~~~l~~lL~~ll~~~------~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~ 461 (474)
.+++-....+-+..|.++-..-+.++ .+...+-.||||.|++.|++++-.|...||++.
T Consensus 219 D~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~ 283 (641)
T KOG0352|consen 219 DNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAM 283 (641)
T ss_pred HHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchH
Confidence 22222222334444555555545421 111246789999999999999999999999976
No 82
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=5.1e-19 Score=193.60 Aligned_cols=128 Identities=11% Similarity=0.135 Sum_probs=106.6
Q ss_pred CCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHH
Q 011963 194 GVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (474)
Q Consensus 194 g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~ 273 (474)
|. .|+++ |.-..=.+..|+ |+.++|| +|||++|.+|++-..+. |..+-|++||.+||.|.+
T Consensus 79 g~-~~~dv-----Qlig~l~L~~G~--Iaem~TG-eGKTLva~lpa~l~aL~----------G~~V~IvTpn~yLA~rd~ 139 (830)
T PRK12904 79 GM-RHFDV-----QLIGGMVLHEGK--IAEMKTG-EGKTLVATLPAYLNALT----------GKGVHVVTVNDYLAKRDA 139 (830)
T ss_pred CC-CCCcc-----HHHhhHHhcCCc--hhhhhcC-CCcHHHHHHHHHHHHHc----------CCCEEEEecCHHHHHHHH
Confidence 44 45667 888877777776 8999999 99999999999743332 335669999999999999
Q ss_pred HHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHH-HHHHHcCC------CCCCCcceEEeccccccC
Q 011963 274 SVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLKA------IDVSGVSLLVVDRLDSLS 343 (474)
Q Consensus 274 ~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL-~~ll~~~~------~~l~~l~~lViDEad~ll 343 (474)
.++..+ ..+|+++++++|+.+...+...+ .+||+++||++| .|+|+.+. ..+..+.|+||||||.||
T Consensus 140 e~~~~l~~~LGlsv~~i~~~~~~~er~~~y---~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 140 EWMGPLYEFLGLSVGVILSGMSPEERREAY---AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred HHHHHHHhhcCCeEEEEcCCCCHHHHHHhc---CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 999998 66699999999999988766654 479999999999 89987754 347889999999999987
No 83
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.82 E-value=4.4e-19 Score=196.40 Aligned_cols=236 Identities=10% Similarity=0.065 Sum_probs=174.1
Q ss_pred CchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-cc
Q 011963 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KA 281 (474)
Q Consensus 203 ~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~ 281 (474)
.++||++++-++.+|..|+++|||| ||||+..-..+...+.. +-+++|.+|.++|.+|.|+.+... ..
T Consensus 120 LD~fQ~~a~~~Ler~esVlV~ApTs-sGKTvVaeyAi~~al~~----------~qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 120 LDPFQQEAIAILERGESVLVCAPTS-SGKTVVAEYAIALALRD----------GQRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred cCHHHHHHHHHHhCCCcEEEEccCC-CCcchHHHHHHHHHHHc----------CCceEeccchhhhhhhHHHHHHHHhhh
Confidence 3477999999999999999999999 99999877666654443 557999999999999999988775 32
Q ss_pred CCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC---hhHHHHHHhhCCCC
Q 011963 282 FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGK 358 (474)
Q Consensus 282 ~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~ 358 (474)
..-.++.++|+..++. +..++|.|.+-|..++.++...+..+.++|+||+|.|.| .--.+.++-++|..
T Consensus 189 v~~~vGL~TGDv~IN~--------~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~ 260 (1041)
T COG4581 189 VADMVGLMTGDVSINP--------DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDH 260 (1041)
T ss_pred hhhhccceecceeeCC--------CCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCC
Confidence 2122466788876653 678999999999999999999999999999999999999 77788899999999
Q ss_pred CcEEEEEccCCccHHHHHHHhh---cCCceEEEccCCcccccCCcEEEEEEcC------CchhHH--HH-----------
Q 011963 359 PHTVVFNDCLTYTSVPAVQNLL---LGSINRLSLNQSVASQSACIIQSVNVCA------SDEEKI--LK----------- 416 (474)
Q Consensus 359 ~q~llfSAT~~~~v~~l~~~~l---~~p~~~v~v~~~~~~~~~~i~q~~~~~~------~~~~K~--~~----------- 416 (474)
.|+++||||+|+ ..+|+.|+- ..|. .|..+.. -+..++|+++.-. ++..++ ..
T Consensus 261 v~~v~LSATv~N-~~EF~~Wi~~~~~~~~-~vv~t~~---RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~ 335 (1041)
T COG4581 261 VRFVFLSATVPN-AEEFAEWIQRVHSQPI-HVVSTEH---RPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCF 335 (1041)
T ss_pred CcEEEEeCCCCC-HHHHHHHHHhccCCCe-EEEeecC---CCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhcc
Confidence 999999999999 566666664 3454 4443321 1223455444220 011110 00
Q ss_pred -------------------------------HHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcccchHH
Q 011963 417 -------------------------------GIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSISTGSN 465 (474)
Q Consensus 417 -------------------------------l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~~~r~ 465 (474)
...++..+... +.-|+|+||-|+..|+.++..|....+.-..+++
T Consensus 336 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~----~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e 411 (1041)
T COG4581 336 SEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKD----NLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKE 411 (1041)
T ss_pred chhccccCccccccccccccccCCcccccccchHHHhhhhhh----cCCceEEEEEchhhHHHHHHHhcccccccCCcHH
Confidence 01122222222 2569999999999999999999888777766665
Q ss_pred H
Q 011963 466 C 466 (474)
Q Consensus 466 ~ 466 (474)
.
T Consensus 412 ~ 412 (1041)
T COG4581 412 R 412 (1041)
T ss_pred H
Confidence 5
No 84
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.81 E-value=4.7e-19 Score=185.95 Aligned_cols=238 Identities=9% Similarity=0.086 Sum_probs=179.6
Q ss_pred ccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHH
Q 011963 197 QDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (474)
Q Consensus 197 ~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 276 (474)
+-.|+..++||..||-++-++..|||+|.|. +|||.+.-..+...|... -++||-+|-++|.+|-|+++
T Consensus 124 k~YPF~LDpFQ~~aI~Cidr~eSVLVSAHTS-AGKTVVAeYAIA~sLr~k----------QRVIYTSPIKALSNQKYREl 192 (1041)
T KOG0948|consen 124 KTYPFTLDPFQSTAIKCIDRGESVLVSAHTS-AGKTVVAEYAIAMSLREK----------QRVIYTSPIKALSNQKYREL 192 (1041)
T ss_pred cCCCcccCchHhhhhhhhcCCceEEEEeecC-CCcchHHHHHHHHHHHhc----------CeEEeeChhhhhcchhHHHH
Confidence 3457778899999999999999999999999 899999888888777663 39999999999999999988
Q ss_pred Hh-cccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC---hhHHHHHH
Q 011963 277 KP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIR 352 (474)
Q Consensus 277 ~~-l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il 352 (474)
.. |+. |+..+|++.++. ....||.|.+-|..++.++.--+..|.|+|+||+|.|-| .--++.-+
T Consensus 193 ~~EF~D----VGLMTGDVTInP--------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETI 260 (1041)
T KOG0948|consen 193 LEEFKD----VGLMTGDVTINP--------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETI 260 (1041)
T ss_pred HHHhcc----cceeecceeeCC--------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeE
Confidence 76 543 556777776553 567999999999999999888899999999999999999 44455555
Q ss_pred hhCCCCCcEEEEEccCCccHHHHHHHh---hcCCceEEEccCCcccccCCcEEEEEEcCC--------c-----hhHHHH
Q 011963 353 QSISGKPHTVVFNDCLTYTSVPAVQNL---LLGSINRLSLNQSVASQSACIIQSVNVCAS--------D-----EEKILK 416 (474)
Q Consensus 353 ~~l~~~~q~llfSAT~~~~v~~l~~~~---l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~--------~-----~~K~~~ 416 (474)
-.+|.+.+.+++|||+|+. .++|+|. -..|...|-.+-. +..++|+++...+ + ++.+..
T Consensus 261 IllP~~vr~VFLSATiPNA-~qFAeWI~~ihkQPcHVVYTdyR----PTPLQHyifP~ggdGlylvVDek~~FrednF~~ 335 (1041)
T KOG0948|consen 261 ILLPDNVRFVFLSATIPNA-RQFAEWICHIHKQPCHVVYTDYR----PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQK 335 (1041)
T ss_pred EeccccceEEEEeccCCCH-HHHHHHHHHHhcCCceEEeecCC----CCcceeeeecCCCCeeEEEEecccccchHHHHH
Confidence 6789999999999999994 5555554 4667633433322 2235555443221 1 112221
Q ss_pred -----------------------------------HHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc
Q 011963 417 -----------------------------------GIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS 461 (474)
Q Consensus 417 -----------------------------------l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~ 461 (474)
++.++..++.+. ..|+|||+.|+++|+.+|..|.+..++..
T Consensus 336 am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~----~~PVIvFSFSkkeCE~~Alqm~kldfN~d 411 (1041)
T KOG0948|consen 336 AMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERN----YLPVIVFSFSKKECEAYALQMSKLDFNTD 411 (1041)
T ss_pred HHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhc----CCceEEEEecHhHHHHHHHhhccCcCCCh
Confidence 223333333332 57999999999999999999999999977
Q ss_pred chHHH
Q 011963 462 TGSNC 466 (474)
Q Consensus 462 ~~r~~ 466 (474)
.+.+-
T Consensus 412 eEk~~ 416 (1041)
T KOG0948|consen 412 EEKEL 416 (1041)
T ss_pred hHHHH
Confidence 55553
No 85
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.80 E-value=3.3e-18 Score=174.33 Aligned_cols=166 Identities=12% Similarity=0.047 Sum_probs=135.3
Q ss_pred CCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHH
Q 011963 194 GVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (474)
Q Consensus 194 g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~ 273 (474)
-+-.|.-++.+.||.....-++.+ ++|++.||| -|||+..++-+...+... .+ .+|+|+||+-|+.|-.
T Consensus 7 ~~i~p~~ie~R~YQ~~i~a~al~~-NtLvvlPTG-LGKT~IA~~V~~~~l~~~--------~~-kvlfLAPTKPLV~Qh~ 75 (542)
T COG1111 7 PLIKPNTIEPRLYQLNIAAKALFK-NTLVVLPTG-LGKTFIAAMVIANRLRWF--------GG-KVLFLAPTKPLVLQHA 75 (542)
T ss_pred cccccccccHHHHHHHHHHHHhhc-CeEEEecCC-ccHHHHHHHHHHHHHHhc--------CC-eEEEecCCchHHHHHH
Confidence 344666778888999888777776 999999999 999998888777666653 24 8999999999999999
Q ss_pred HHHHhcccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC---hhHHH
Q 011963 274 SVCKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLS 349 (474)
Q Consensus 274 ~~~~~l~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~---~~~l~ 349 (474)
..|..+.+. .-.++.++|.++.++....+.+ -+|+|+||.-+..-|..+.+++.++.+||+|||||-.. .-.+.
T Consensus 76 ~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~--~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va 153 (542)
T COG1111 76 EFCRKVTGIPEDEIAALTGEVRPEEREELWAK--KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVA 153 (542)
T ss_pred HHHHHHhCCChhheeeecCCCChHHHHHHHhh--CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHH
Confidence 999998554 5678899999998876666665 48999999999988899999999999999999999988 33444
Q ss_pred HHHhhCCCCCcEEEEEccCCccH
Q 011963 350 LIRQSISGKPHTVVFNDCLTYTS 372 (474)
Q Consensus 350 ~Il~~l~~~~q~llfSAT~~~~v 372 (474)
.-.-....++.++++|||...+.
T Consensus 154 ~~y~~~~k~~~ilgLTASPGs~~ 176 (542)
T COG1111 154 KEYLRSAKNPLILGLTASPGSDL 176 (542)
T ss_pred HHHHHhccCceEEEEecCCCCCH
Confidence 43333356788999999986653
No 86
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.80 E-value=1.5e-18 Score=186.10 Aligned_cols=232 Identities=11% Similarity=0.062 Sum_probs=171.9
Q ss_pred chhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccC
Q 011963 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF 282 (474)
Q Consensus 204 ~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~ 282 (474)
+.||++||-++..|-.|+|.|+|. +|||+..-..+.- .+. ++.+++|-+|-++|.+|-++.|+.- ...
T Consensus 299 D~FQk~Ai~~lerg~SVFVAAHTS-AGKTvVAEYAial---aq~-------h~TR~iYTSPIKALSNQKfRDFk~tF~Dv 367 (1248)
T KOG0947|consen 299 DTFQKEAIYHLERGDSVFVAAHTS-AGKTVVAEYAIAL---AQK-------HMTRTIYTSPIKALSNQKFRDFKETFGDV 367 (1248)
T ss_pred cHHHHHHHHHHHcCCeEEEEecCC-CCcchHHHHHHHH---HHh-------hccceEecchhhhhccchHHHHHHhcccc
Confidence 567999999999999999999999 9999987655441 111 4789999999999999999988874 333
Q ss_pred CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC---hhHHHHHHhhCCCCC
Q 011963 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKP 359 (474)
Q Consensus 283 ~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~ 359 (474)
| .++|++.... ...+||.|.+-|..++.++.--++++.|+|+||+|.+-| .--++.++-+||.+.
T Consensus 368 g----LlTGDvqinP--------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV 435 (1248)
T KOG0947|consen 368 G----LLTGDVQINP--------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHV 435 (1248)
T ss_pred c----eeecceeeCC--------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccc
Confidence 3 7888876543 578999999999999999888899999999999999999 677888999999999
Q ss_pred cEEEEEccCCccHHHHHHHhhcCC--ceEEEccCCcccccCCcEEEEEEcCC----------------------------
Q 011963 360 HTVVFNDCLTYTSVPAVQNLLLGS--INRLSLNQSVASQSACIIQSVNVCAS---------------------------- 409 (474)
Q Consensus 360 q~llfSAT~~~~v~~l~~~~l~~p--~~~v~v~~~~~~~~~~i~q~~~~~~~---------------------------- 409 (474)
++|++|||+|+ ..+++.|.-+.- ..+|.-+.. . +-.++|+++.-.+
T Consensus 436 ~~IlLSATVPN-~~EFA~WIGRtK~K~IyViST~k--R-PVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak 511 (1248)
T KOG0947|consen 436 NFILLSATVPN-TLEFADWIGRTKQKTIYVISTSK--R-PVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAK 511 (1248)
T ss_pred eEEEEeccCCC-hHHHHHHhhhccCceEEEEecCC--C-ccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccc
Confidence 99999999999 556777664322 112222211 1 1123443331100
Q ss_pred --------------------------------ch--hHH--HHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHH
Q 011963 410 --------------------------------DE--EKI--LKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTL 453 (474)
Q Consensus 410 --------------------------------~~--~K~--~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L 453 (474)
.. ++. ..+.+++.++.+.+ --|+||||.|+..|++.++.|
T Consensus 512 ~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~----lLP~VvFvFSkkrCde~a~~L 587 (1248)
T KOG0947|consen 512 FVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKN----LLPVVVFVFSKKRCDEYADYL 587 (1248)
T ss_pred ccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcc----cCceEEEEEccccHHHHHHHH
Confidence 00 011 12445666554443 469999999999999999999
Q ss_pred hhCCCcccchHHH
Q 011963 454 KCKGYSISTGSNC 466 (474)
Q Consensus 454 ~~~gi~v~~~r~~ 466 (474)
...++.-..++..
T Consensus 588 ~~~nL~~~~EKse 600 (1248)
T KOG0947|consen 588 TNLNLTDSKEKSE 600 (1248)
T ss_pred hccCcccchhHHH
Confidence 8888876655443
No 87
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.80 E-value=3.8e-18 Score=194.04 Aligned_cols=227 Identities=8% Similarity=0.035 Sum_probs=146.0
Q ss_pred CCCCccccCCCchhhHHHHHHHhc-CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEE--ec----c
Q 011963 193 DGVEQDNPLFVNSWGIEFWKCYSS-AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL--VS----S 265 (474)
Q Consensus 193 ~g~~~ptpi~~~~~Q~~~i~~~l~-g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil--~P----t 265 (474)
..|..--||.. ....|...+. +..++++++|| ||||. .||.+..-.. .+..+.|+ -| +
T Consensus 67 ~~~~~~LPi~~---~r~~Il~ai~~~~VviI~GeTG-SGKTT--qlPq~lle~g---------~g~~g~I~~TQPRRlAA 131 (1294)
T PRK11131 67 ITYPENLPVSQ---KKQDILEAIRDHQVVIVAGETG-SGKTT--QLPKICLELG---------RGVKGLIGHTQPRRLAA 131 (1294)
T ss_pred cCCCCCCCHHH---HHHHHHHHHHhCCeEEEECCCC-CCHHH--HHHHHHHHcC---------CCCCCceeeCCCcHHHH
Confidence 45655567722 4445555554 45677889999 99998 6885532211 12222232 35 6
Q ss_pred HHHHHHHHHHHHh-cccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc-cc
Q 011963 266 QEKAAKVRSVCKP-LKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD-SL 342 (474)
Q Consensus 266 reLa~Qi~~~~~~-l~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad-~l 342 (474)
++||.||..++.. +... |+.+ ....+. .. +++|+|+|||+|++++.... .|+++++||||||| ++
T Consensus 132 rsLA~RVA~El~~~lG~~VGY~v-------rf~~~~---s~-~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERs 199 (1294)
T PRK11131 132 RTVANRIAEELETELGGCVGYKV-------RFNDQV---SD-NTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERS 199 (1294)
T ss_pred HHHHHHHHHHHhhhhcceeceee-------cCcccc---CC-CCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccc
Confidence 7999999998876 4322 4432 111121 23 68999999999999988654 49999999999999 68
Q ss_pred CChh----HHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCch-----hH
Q 011963 343 SKGD----TLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDE-----EK 413 (474)
Q Consensus 343 l~~~----~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~-----~K 413 (474)
++.+ .+..++.. .++.|+|+||||++. ..++..|.+.|+ |.+... . ..++++|..+.... +.
T Consensus 200 Ln~DfLLg~Lk~lL~~-rpdlKvILmSATid~--e~fs~~F~~apv--I~V~Gr-~---~pVei~y~p~~~~~~~~~~d~ 270 (1294)
T PRK11131 200 LNIDFILGYLKELLPR-RPDLKVIITSATIDP--ERFSRHFNNAPI--IEVSGR-T---YPVEVRYRPIVEEADDTERDQ 270 (1294)
T ss_pred cccchHHHHHHHhhhc-CCCceEEEeeCCCCH--HHHHHHcCCCCE--EEEcCc-c---ccceEEEeecccccchhhHHH
Confidence 8722 23333322 146899999999974 567766666664 555443 1 23667777664221 22
Q ss_pred HHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCc
Q 011963 414 ILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (474)
Q Consensus 414 ~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~ 459 (474)
+..+...+..+. ... .+.+||||++..+++.++..|...|++
T Consensus 271 l~~ll~~V~~l~-~~~---~GdILVFLpg~~EIe~lae~L~~~~~~ 312 (1294)
T PRK11131 271 LQAIFDAVDELG-REG---PGDILIFMSGEREIRDTADALNKLNLR 312 (1294)
T ss_pred HHHHHHHHHHHh-cCC---CCCEEEEcCCHHHHHHHHHHHHhcCCC
Confidence 333333333332 223 678999999999999999999998876
No 88
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.77 E-value=1.7e-17 Score=181.93 Aligned_cols=246 Identities=13% Similarity=0.139 Sum_probs=175.3
Q ss_pred CCCCccccCCCchhhHHHHHHHhcCC-cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcC-CCCCCcEEEEEeccHHHHH
Q 011963 193 DGVEQDNPLFVNSWGIEFWKCYSSAK-DILETSGSSSTIVQIAWIVATAADSIARKEKEG-FSFTGPFLLFLVSSQEKAA 270 (474)
Q Consensus 193 ~g~~~ptpi~~~~~Q~~~i~~~l~g~-dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~-~~~~~~~alil~PtreLa~ 270 (474)
.|.....+| |....+..+.+. ++++||||| +|||-..++.+|+.+-.+....+ .+......+|++|+.+|+.
T Consensus 305 ~g~~sLNrI-----QS~v~daAl~~~EnmLlCAPTG-aGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvq 378 (1674)
T KOG0951|consen 305 FGKQSLNRI-----QSKVYDAALRGDENMLLCAPTG-AGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQ 378 (1674)
T ss_pred ccchhhhHH-----HHHHHHHHhcCcCcEEEeccCC-CCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHH
Confidence 477778888 999999999986 999999999 99999999999999988654322 2224568999999999998
Q ss_pred HHHHHHH-hcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCC---CCCcceEEeccccccCC--
Q 011963 271 KVRSVCK-PLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID---VSGVSLLVVDRLDSLSK-- 344 (474)
Q Consensus 271 Qi~~~~~-~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~---l~~l~~lViDEad~ll~-- 344 (474)
.+-..+. .++.+||+|.-++|+.....+. +. +-+|+|+||+.. |.+.++..+ .+-++++||||.|.+-|
T Consensus 379 E~VgsfSkRla~~GI~V~ElTgD~~l~~~q--ie--eTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLLhDdR 453 (1674)
T KOG0951|consen 379 EMVGSFSKRLAPLGITVLELTGDSQLGKEQ--IE--ETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLLHDDR 453 (1674)
T ss_pred HHHHHHHhhccccCcEEEEecccccchhhh--hh--cceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhccccc
Confidence 8877554 4788999999999997744321 21 578999999985 556555433 33578999999999988
Q ss_pred hhHHHHHHhhC-------CCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCch--hHHH
Q 011963 345 GDTLSLIRQSI-------SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDE--EKIL 415 (474)
Q Consensus 345 ~~~l~~Il~~l-------~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~--~K~~ 415 (474)
.+.++.|.... ...+..+++|||+|+. .+.+.-+.-++.....++.+ .. +-.+.|.|+-+.... .++.
T Consensus 454 GpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy-~DV~~Fl~v~~~glf~fd~s-yR-pvPL~qq~Igi~ek~~~~~~q 530 (1674)
T KOG0951|consen 454 GPVLESIVARTFRRSESTEEGSRLVGLSATLPNY-EDVASFLRVDPEGLFYFDSS-YR-PVPLKQQYIGITEKKPLKRFQ 530 (1674)
T ss_pred chHHHHHHHHHHHHhhhcccCceeeeecccCCch-hhhHHHhccCcccccccCcc-cC-cCCccceEeccccCCchHHHH
Confidence 77776666554 2468899999999994 33333222333213344433 22 335888888775221 2233
Q ss_pred HHHHHHHH-HhhccCCCCCCcEEEEEccchhHHHHHHHHhh
Q 011963 416 KGIQVLDH-AYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKC 455 (474)
Q Consensus 416 ~l~~lL~~-ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~ 455 (474)
...++..+ ++..-. ..++||||.|++++-..|..++.
T Consensus 531 amNe~~yeKVm~~ag---k~qVLVFVHsRkET~ktA~aIRd 568 (1674)
T KOG0951|consen 531 AMNEACYEKVLEHAG---KNQVLVFVHSRKETAKTARAIRD 568 (1674)
T ss_pred HHHHHHHHHHHHhCC---CCcEEEEEEechHHHHHHHHHHH
Confidence 33333332 333333 58999999999999999998874
No 89
>PRK09694 helicase Cas3; Provisional
Probab=99.75 E-value=1.3e-16 Score=177.89 Aligned_cols=252 Identities=13% Similarity=0.076 Sum_probs=148.2
Q ss_pred hhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-cc-C
Q 011963 205 SWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KA-F 282 (474)
Q Consensus 205 ~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~-~ 282 (474)
++|..+......+.-+|+.|||| +|||.+.++.+. .+.... ...+++|..||+++++|++..+..+ .. +
T Consensus 289 p~Q~~~~~~~~~pgl~ileApTG-sGKTEAAL~~A~-~l~~~~-------~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 289 QLQTLVDALPLQPGLTIIEAPTG-SGKTEAALAYAW-RLIDQG-------LADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred HHHHHHHhhccCCCeEEEEeCCC-CCHHHHHHHHHH-HHHHhC-------CCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 33988755444456789999999 999999876655 343321 2458899999999999999998864 22 2
Q ss_pred -CcEEEEEecCCCHHHHHH---------------------HHh---c--CCCcEEEEChHHHHHH-HHcCCCCCCC----
Q 011963 283 -GIHTVSLHPGAAIDHQIT---------------------GLR---S--CEPEFLVSTPERLLKL-VSLKAIDVSG---- 330 (474)
Q Consensus 283 -~i~v~~~~gg~~~~~q~~---------------------~l~---~--~~~~IlV~TP~rL~~l-l~~~~~~l~~---- 330 (474)
...+..++|......... .+. + --.+|+|||+.+++.- +..+...+..
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 356777888765332111 111 1 0148999999999853 3323222222
Q ss_pred cceEEeccccccCC--hhHHHHHHhhCC-CCCcEEEEEccCCccHHH-HHHHhhcC-Cc------eEEEccC--------
Q 011963 331 VSLLVVDRLDSLSK--GDTLSLIRQSIS-GKPHTVVFNDCLTYTSVP-AVQNLLLG-SI------NRLSLNQ-------- 391 (474)
Q Consensus 331 l~~lViDEad~ll~--~~~l~~Il~~l~-~~~q~llfSAT~~~~v~~-l~~~~l~~-p~------~~v~v~~-------- 391 (474)
-+.|||||+|.+-. ...+..+++.+. ....+|++|||+|....+ +...|-.. +. -.|....
T Consensus 440 ~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~ 519 (878)
T PRK09694 440 RSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFD 519 (878)
T ss_pred cCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeee
Confidence 25899999999844 445555665542 457799999999997654 33333111 00 0111000
Q ss_pred -CcccccCCcEEEEEE--c--CCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCC---Cccc--
Q 011963 392 -SVASQSACIIQSVNV--C--ASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKG---YSIS-- 461 (474)
Q Consensus 392 -~~~~~~~~i~q~~~~--~--~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~g---i~v~-- 461 (474)
..........+.+.. . ....... .++..+...+.. ++++||||||++.|+.+++.|+..+ +++.
T Consensus 520 ~~~~~~~~~~~~~v~v~~~~~~~~~~~~-~~l~~i~~~~~~-----g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~ll 593 (878)
T PRK09694 520 LSAHPEQLPARFTIQLEPICLADMLPDL-TLLQRMIAAANA-----GAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLF 593 (878)
T ss_pred ccccccccCcceEEEEEeeccccccCHH-HHHHHHHHHHhc-----CCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEE
Confidence 000000001111111 1 1111112 222333332222 5799999999999999999999765 4443
Q ss_pred ------chH----HHHHHHh
Q 011963 462 ------TGS----NCIVSHI 471 (474)
Q Consensus 462 ------~~r----~~~i~~F 471 (474)
.+| +..++.|
T Consensus 594 Hsrf~~~dR~~~E~~vl~~f 613 (878)
T PRK09694 594 HARFTLNDRREKEQRVIENF 613 (878)
T ss_pred eCCCCHHHHHHHHHHHHHHH
Confidence 355 3467788
No 90
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.4e-16 Score=174.51 Aligned_cols=127 Identities=9% Similarity=0.093 Sum_probs=103.5
Q ss_pred ccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHH
Q 011963 197 QDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (474)
Q Consensus 197 ~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 276 (474)
.|+++ |.-.--.+..|+ |+.++|| +||||+|.+|++...+. +..+.||+|+++||.|...++
T Consensus 82 ~~ydV-----QliGgl~L~~G~--IaEm~TG-EGKTL~a~lp~~l~al~----------g~~VhIvT~ndyLA~RD~e~m 143 (908)
T PRK13107 82 RHFDV-----QLLGGMVLDSNR--IAEMRTG-EGKTLTATLPAYLNALT----------GKGVHVITVNDYLARRDAENN 143 (908)
T ss_pred CcCch-----HHhcchHhcCCc--cccccCC-CCchHHHHHHHHHHHhc----------CCCEEEEeCCHHHHHHHHHHH
Confidence 45566 765554555554 8899999 99999999999976664 446999999999999999999
Q ss_pred Hhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHH-HHHHHcC-CCCC-----CCcceEEeccccccCC
Q 011963 277 KPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLK-AIDV-----SGVSLLVVDRLDSLSK 344 (474)
Q Consensus 277 ~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL-~~ll~~~-~~~l-----~~l~~lViDEad~ll~ 344 (474)
..+ ..+|+++.+++++.+... .....++||++|||++| .|+|+.+ .++. ..+.++||||||.||-
T Consensus 144 ~~l~~~lGlsv~~i~~~~~~~~---r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 144 RPLFEFLGLTVGINVAGLGQQE---KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred HHHHHhcCCeEEEecCCCCHHH---HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 998 666999999999988643 23333689999999999 8888876 4444 7899999999999985
No 91
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.72 E-value=8.7e-16 Score=163.66 Aligned_cols=193 Identities=14% Similarity=0.120 Sum_probs=121.8
Q ss_pred EEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH--
Q 011963 221 LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ-- 298 (474)
Q Consensus 221 l~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q-- 298 (474)
|+.+||| ||||.+|+..+. .++. .+.++|||+|+++|+.|+++.++.. ++.++..++|+.+..+.
T Consensus 1 LL~g~TG-sGKT~v~l~~i~-~~l~---------~g~~vLvlvP~i~L~~Q~~~~l~~~--f~~~v~vlhs~~~~~er~~ 67 (505)
T TIGR00595 1 LLFGVTG-SGKTEVYLQAIE-KVLA---------LGKSVLVLVPEIALTPQMIQRFKYR--FGSQVAVLHSGLSDSEKLQ 67 (505)
T ss_pred CccCCCC-CCHHHHHHHHHH-HHHH---------cCCeEEEEeCcHHHHHHHHHHHHHH--hCCcEEEEECCCCHHHHHH
Confidence 4678999 999999965544 3333 2568999999999999999988764 36778889998875543
Q ss_pred -HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC----h-----hHHHHHHhhCCCCCcEEEEEccC
Q 011963 299 -ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----G-----DTLSLIRQSISGKPHTVVFNDCL 368 (474)
Q Consensus 299 -~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~----~-----~~l~~Il~~l~~~~q~llfSAT~ 368 (474)
+..+..+.++|||||+..|. ..+.++.++||||+|.... . .++..++ ....+.+++++|||.
T Consensus 68 ~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~r-a~~~~~~vil~SATP 139 (505)
T TIGR00595 68 AWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYR-AKKFNCPVVLGSATP 139 (505)
T ss_pred HHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHH-HHhcCCCEEEEeCCC
Confidence 44555657899999998773 3578899999999998874 1 1232233 334578999999995
Q ss_pred CccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCch--hH-HHHHHHHHHHHhhccCCCCCCcEEEEEccc
Q 011963 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDE--EK-ILKGIQVLDHAYGDHFHSEPLKVLYIVGKD 443 (474)
Q Consensus 369 ~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~--~K-~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~ 443 (474)
+. +.+... .......+.+...... .......++....+. .. ...++..|.+.+.. +.++|||+|++
T Consensus 140 sl--es~~~~-~~g~~~~~~l~~r~~~-~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~-----g~qvLvflnrr 208 (505)
T TIGR00595 140 SL--ESYHNA-KQKAYRLLVLTRRVSG-RKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAA-----GEQSILFLNRR 208 (505)
T ss_pred CH--HHHHHH-hcCCeEEeechhhhcC-CCCCeEEEEecccccccCCccHHHHHHHHHHHHc-----CCcEEEEEeCC
Confidence 53 333222 2222213333322111 111222222222111 01 12455666666655 45999997765
No 92
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.72 E-value=1.2e-15 Score=165.74 Aligned_cols=253 Identities=12% Similarity=0.102 Sum_probs=178.2
Q ss_pred HHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEE
Q 011963 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (474)
Q Consensus 183 ~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil 262 (474)
.+.+.+.+++.....|+.+ |+-+...+..|++.-+.|||| .||| +|.+-+-- .... .|-+++||
T Consensus 68 ~e~~~~fF~k~~G~~~ws~-----QR~WakR~~rg~SFaiiAPTG-vGKT-Tfg~~~sl-~~a~--------kgkr~yii 131 (1187)
T COG1110 68 YEEFEEFFKKATGFRPWSA-----QRVWAKRLVRGKSFAIIAPTG-VGKT-TFGLLMSL-YLAK--------KGKRVYII 131 (1187)
T ss_pred HHHHHHHHHHhhCCCchHH-----HHHHHHHHHcCCceEEEcCCC-Cchh-HHHHHHHH-HHHh--------cCCeEEEE
Confidence 4556666776655589888 999999999999999999999 9999 56543332 2222 36699999
Q ss_pred eccHHHHHHHHHHHHhcccC-C-cEEEE-EecCCCHHH---HHHHHhcCCCcEEEEChHHHHHHHHc-CCCCCCCcceEE
Q 011963 263 VSSQEKAAKVRSVCKPLKAF-G-IHTVS-LHPGAAIDH---QITGLRSCEPEFLVSTPERLLKLVSL-KAIDVSGVSLLV 335 (474)
Q Consensus 263 ~PtreLa~Qi~~~~~~l~~~-~-i~v~~-~~gg~~~~~---q~~~l~~~~~~IlV~TP~rL~~ll~~-~~~~l~~l~~lV 335 (474)
+||+-|+.|+++.+..+... + ..+.+ .||..+..+ -...+.++++||+|+|..-|...+.. .. -+++|++
T Consensus 132 ~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~---~kFdfif 208 (1187)
T COG1110 132 VPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK---LKFDFIF 208 (1187)
T ss_pred ecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc---cCCCEEE
Confidence 99999999999999998322 2 43333 666655443 35567778899999999888765543 22 2467999
Q ss_pred eccccccCC-hhHHHHHHhhC--------------------------------------------CCCCcEEEEEccCCc
Q 011963 336 VDRLDSLSK-GDTLSLIRQSI--------------------------------------------SGKPHTVVFNDCLTY 370 (474)
Q Consensus 336 iDEad~ll~-~~~l~~Il~~l--------------------------------------------~~~~q~llfSAT~~~ 370 (474)
+|.+|.++. ...+..++..+ .+..+.++.|||..+
T Consensus 209 VDDVDA~LkaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~ 288 (1187)
T COG1110 209 VDDVDAILKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKP 288 (1187)
T ss_pred EccHHHHHhccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCC
Confidence 999999886 22233222222 123688999999987
Q ss_pred cH--HHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEcc---chh
Q 011963 371 TS--VPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGK---DSK 445 (474)
Q Consensus 371 ~v--~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s---~~~ 445 (474)
.- ..+.+.+|+- .++.. .....||...|+..+ -...+..++..+ +.-+|||++. ++.
T Consensus 289 rg~R~~LfReLlgF-----evG~~-~~~LRNIvD~y~~~~----~~e~~~elvk~l--------G~GgLIfV~~d~G~e~ 350 (1187)
T COG1110 289 RGSRLKLFRELLGF-----EVGSG-GEGLRNIVDIYVESE----SLEKVVELVKKL--------GDGGLIFVPIDYGREK 350 (1187)
T ss_pred CCchHHHHHHHhCC-----ccCcc-chhhhheeeeeccCc----cHHHHHHHHHHh--------CCCeEEEEEcHHhHHH
Confidence 63 2344555542 23332 345557777777653 233444677776 6678999999 999
Q ss_pred HHHHHHHHhhCCCccc---chHHHHHHHhh
Q 011963 446 FQNLVSTLKCKGYSIS---TGSNCIVSHIK 472 (474)
Q Consensus 446 a~~l~~~L~~~gi~v~---~~r~~~i~~Fk 472 (474)
|++|+++|+.+|+++. ......+++|.
T Consensus 351 aeel~e~Lr~~Gi~a~~~~a~~~~~le~F~ 380 (1187)
T COG1110 351 AEELAEYLRSHGINAELIHAEKEEALEDFE 380 (1187)
T ss_pred HHHHHHHHHhcCceEEEeeccchhhhhhhc
Confidence 9999999999999987 34456688885
No 93
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=6.1e-16 Score=168.45 Aligned_cols=246 Identities=9% Similarity=0.010 Sum_probs=151.6
Q ss_pred CCCchhhHHHHHHHhc-C--CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHH
Q 011963 201 LFVNSWGIEFWKCYSS-A--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK 277 (474)
Q Consensus 201 i~~~~~Q~~~i~~~l~-g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 277 (474)
++.++||.+|+..+.. | +..++++||| +|||+..+.. +..+ .-.+|||||+.+|+.|+.+++.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtG-aGKTlvai~a-a~~l------------~k~tLILvps~~Lv~QW~~ef~ 319 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCG-AGKSLVGVTA-ACTV------------KKSCLVLCTSAVSVEQWKQQFK 319 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCC-CChHHHHHHH-HHHh------------CCCEEEEeCcHHHHHHHHHHHH
Confidence 4568899999999873 4 3789999999 9999987643 3222 2268999999999999999999
Q ss_pred hcccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHc--------CCCCCCCcceEEeccccccCChhHH
Q 011963 278 PLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL--------KAIDVSGVSLLVVDRLDSLSKGDTL 348 (474)
Q Consensus 278 ~l~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~--------~~~~l~~l~~lViDEad~ll~~~~l 348 (474)
.+... ...+..++|+.... ... ..+|+|+|...+.....+ ..+.-....+||+||||++. ...+
T Consensus 320 ~~~~l~~~~I~~~tg~~k~~-----~~~-~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp-A~~f 392 (732)
T TIGR00603 320 MWSTIDDSQICRFTSDAKER-----FHG-EAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP-AAMF 392 (732)
T ss_pred HhcCCCCceEEEEecCcccc-----ccc-CCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc-HHHH
Confidence 98544 45666666653211 111 368999999876432111 11222456799999999997 4556
Q ss_pred HHHHhhCCCCCcEEEEEccCCccHH--HHHHHhhcCCceEEEccCCc-ccccCCcEEEEEEcCC----------------
Q 011963 349 SLIRQSISGKPHTVVFNDCLTYTSV--PAVQNLLLGSINRLSLNQSV-ASQSACIIQSVNVCAS---------------- 409 (474)
Q Consensus 349 ~~Il~~l~~~~q~llfSAT~~~~v~--~l~~~~l~~p~~~v~v~~~~-~~~~~~i~q~~~~~~~---------------- 409 (474)
..++..+.. ...+++|||+-..-. ..+..+++.....+...... ..-...+...-+.|+-
T Consensus 393 r~il~~l~a-~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 393 RRVLTIVQA-HCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHHHhcCc-CcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 667776643 457999999865421 22333344322122111100 0111112222222221
Q ss_pred ------chhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCC---CcccchHHHHHHHhhc
Q 011963 410 ------DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKG---YSISTGSNCIVSHIKN 473 (474)
Q Consensus 410 ------~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~g---i~v~~~r~~~i~~Fk~ 473 (474)
...|+..+ ..++..+. ..+.++||||++...++.++..|...- =....+|..+++.|++
T Consensus 472 ~~l~~~np~K~~~~----~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L~~~~I~G~ts~~ER~~il~~Fr~ 539 (732)
T TIGR00603 472 MLLYVMNPNKFRAC----QFLIRFHE-QRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQQERMQILQNFQH 539 (732)
T ss_pred hHHhhhChHHHHHH----HHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHcCCceEECCCCHHHHHHHHHHHHh
Confidence 12344333 33443331 127899999999999999999884211 1112689999999973
No 94
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.69 E-value=2.3e-15 Score=172.12 Aligned_cols=235 Identities=8% Similarity=0.023 Sum_probs=147.8
Q ss_pred hCCCCccccCCCchhhHHHHHH-HhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHH
Q 011963 192 HDGVEQDNPLFVNSWGIEFWKC-YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAA 270 (474)
Q Consensus 192 ~~g~~~ptpi~~~~~Q~~~i~~-~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~ 270 (474)
...|....||+. ....|.. +.....+|++++|| ||||. .+|.+.. .... + .....++.-|.|--|.
T Consensus 59 ~~~~~~~LPi~~---~~~~Il~~l~~~~vvii~g~TG-SGKTT--qlPq~ll--e~~~--~---~~~~I~~tQPRRlAA~ 125 (1283)
T TIGR01967 59 EIRYPDNLPVSA---KREDIAEAIAENQVVIIAGETG-SGKTT--QLPKICL--ELGR--G---SHGLIGHTQPRRLAAR 125 (1283)
T ss_pred cccCCCCCCHHH---HHHHHHHHHHhCceEEEeCCCC-CCcHH--HHHHHHH--HcCC--C---CCceEecCCccHHHHH
Confidence 457877888822 3344444 44456778889999 99997 5676632 2110 0 1124444567776666
Q ss_pred HHHHHHHhcccCCcEEEEEecC-CCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc-ccCC----
Q 011963 271 KVRSVCKPLKAFGIHTVSLHPG-AAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD-SLSK---- 344 (474)
Q Consensus 271 Qi~~~~~~l~~~~i~v~~~~gg-~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad-~ll~---- 344 (474)
.+...+... +|..++..+|. +..+.+. .. ...|+|+|||+|+..+.... .|+++++||||||| ++++
T Consensus 126 svA~RvA~e--lg~~lG~~VGY~vR~~~~~---s~-~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~L 198 (1283)
T TIGR01967 126 TVAQRIAEE--LGTPLGEKVGYKVRFHDQV---SS-NTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFL 198 (1283)
T ss_pred HHHHHHHHH--hCCCcceEEeeEEcCCccc---CC-CceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhH
Confidence 655443332 13333333332 2222221 23 57899999999999887643 48999999999999 6887
Q ss_pred hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCc-----hhHHHHHHH
Q 011963 345 GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASD-----EEKILKGIQ 419 (474)
Q Consensus 345 ~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~-----~~K~~~l~~ 419 (474)
...+..++... ++.|+|+||||++ ...++..|...|+ |.+..... .+..+|..+... .+....+..
T Consensus 199 L~lLk~il~~r-pdLKlIlmSATld--~~~fa~~F~~apv--I~V~Gr~~----PVev~Y~~~~~~~~~~~~~~~~~i~~ 269 (1283)
T TIGR01967 199 LGYLKQLLPRR-PDLKIIITSATID--PERFSRHFNNAPI--IEVSGRTY----PVEVRYRPLVEEQEDDDLDQLEAILD 269 (1283)
T ss_pred HHHHHHHHhhC-CCCeEEEEeCCcC--HHHHHHHhcCCCE--EEECCCcc----cceeEEecccccccchhhhHHHHHHH
Confidence 33355555443 4789999999997 4566666655554 55543211 355555544321 134445556
Q ss_pred HHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCc
Q 011963 420 VLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (474)
Q Consensus 420 lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~ 459 (474)
.+..++.. . .+.+|||+++..+++.++..|...+++
T Consensus 270 ~I~~l~~~-~---~GdILVFLpg~~EI~~l~~~L~~~~~~ 305 (1283)
T TIGR01967 270 AVDELFAE-G---PGDILIFLPGEREIRDAAEILRKRNLR 305 (1283)
T ss_pred HHHHHHhh-C---CCCEEEeCCCHHHHHHHHHHHHhcCCC
Confidence 66665543 3 579999999999999999999987653
No 95
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.68 E-value=3.4e-16 Score=167.83 Aligned_cols=169 Identities=11% Similarity=-0.010 Sum_probs=129.4
Q ss_pred CCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHH
Q 011963 193 DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (474)
Q Consensus 193 ~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi 272 (474)
..+..|++++.++||.+....+| |+++|+++||| +|||+..+.-++.++...+ ..++|+++||+-|+.|.
T Consensus 53 ~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG-~GKTfIAa~Vm~nh~rw~p--------~~KiVF~aP~~pLv~QQ 122 (746)
T KOG0354|consen 53 QRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTG-SGKTFIAAVIMKNHFEWRP--------KGKVVFLAPTRPLVNQQ 122 (746)
T ss_pred ccccccCcccccHHHHHHhHHhh-cCCeEEEeecC-CCccchHHHHHHHHHhcCC--------cceEEEeeCCchHHHHH
Confidence 36678888999999999999999 99999999999 9999999988888877653 46999999999999998
Q ss_pred HHHHHhcccCCcEEEEEecC-CCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCC-CCCcceEEeccccccCC---hhH
Q 011963 273 RSVCKPLKAFGIHTVSLHPG-AAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAID-VSGVSLLVVDRLDSLSK---GDT 347 (474)
Q Consensus 273 ~~~~~~l~~~~i~v~~~~gg-~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~-l~~l~~lViDEad~ll~---~~~ 347 (474)
...+..+. .+.++....|| .+..... .+-. .++|+|+||.-|..-|..+..+ |+.+.+|||||||+-.. ...
T Consensus 123 ~a~~~~~~-~~~~~T~~l~~~~~~~~r~-~i~~-s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~ 199 (746)
T KOG0354|consen 123 IACFSIYL-IPYSVTGQLGDTVPRSNRG-EIVA-SKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNN 199 (746)
T ss_pred HHHHhhcc-CcccceeeccCccCCCchh-hhhc-ccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHH
Confidence 86665552 23566666666 3333222 2333 4799999999999888775443 69999999999999998 333
Q ss_pred HH-HHHhhCCCCCcEEEEEccCCccHHH
Q 011963 348 LS-LIRQSISGKPHTVVFNDCLTYTSVP 374 (474)
Q Consensus 348 l~-~Il~~l~~~~q~llfSAT~~~~v~~ 374 (474)
+. ..+..-....|+|++|||.......
T Consensus 200 Vmr~~l~~k~~~~qILgLTASpG~~~~~ 227 (746)
T KOG0354|consen 200 IMREYLDLKNQGNQILGLTASPGSKLEQ 227 (746)
T ss_pred HHHHHHHhhhccccEEEEecCCCccHHH
Confidence 33 3333333455999999999876443
No 96
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.68 E-value=2.4e-15 Score=158.12 Aligned_cols=245 Identities=12% Similarity=0.068 Sum_probs=147.5
Q ss_pred cCCCchhhHHHHHHHhc----CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHH
Q 011963 200 PLFVNSWGIEFWKCYSS----AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSV 275 (474)
Q Consensus 200 pi~~~~~Q~~~i~~~l~----g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 275 (474)
.++.++||.+|+..+.. ++..++++||| +|||+.++.-+- .+ ...+||||||++|+.|.++.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTG-aGKT~va~~~~~-~~------------~~~~Lvlv~~~~L~~Qw~~~ 99 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTG-AGKTVVAAEAIA-EL------------KRSTLVLVPTKELLDQWAEA 99 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCC-CCHHHHHHHHHH-Hh------------cCCEEEEECcHHHHHHHHHH
Confidence 44567789999999998 89999999999 999987754332 11 22499999999999999866
Q ss_pred HHhcccCCcEEEEEecCCCHHHHHHHHhcCC-CcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhh
Q 011963 276 CKPLKAFGIHTVSLHPGAAIDHQITGLRSCE-PEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQS 354 (474)
Q Consensus 276 ~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~-~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~ 354 (474)
+.........++ .+||..... . ..|.|+|-..+...-....+......+||+||||++.. +....|...
T Consensus 100 ~~~~~~~~~~~g-~~~~~~~~~--------~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a-~~~~~~~~~ 169 (442)
T COG1061 100 LKKFLLLNDEIG-IYGGGEKEL--------EPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPA-PSYRRILEL 169 (442)
T ss_pred HHHhcCCccccc-eecCceecc--------CCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCc-HHHHHHHHh
Confidence 666522222233 344433221 2 26999998877664211233334688999999999985 333444444
Q ss_pred CCCCCcEEEEEccCCccHHHHH---HHhhcCCceEEEccCCc---ccccCCcEEEEEEcC-Cchh---------HH----
Q 011963 355 ISGKPHTVVFNDCLTYTSVPAV---QNLLLGSINRLSLNQSV---ASQSACIIQSVNVCA-SDEE---------KI---- 414 (474)
Q Consensus 355 l~~~~q~llfSAT~~~~v~~l~---~~~l~~p~~~v~v~~~~---~~~~~~i~q~~~~~~-~~~~---------K~---- 414 (474)
+......+++|||.+....... ..+++ |. ...+.... ..-........+.+. .... +.
T Consensus 170 ~~~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~-vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~ 247 (442)
T COG1061 170 LSAAYPRLGLTATPEREDGGRIGDLFDLIG-PI-VYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELL 247 (442)
T ss_pred hhcccceeeeccCceeecCCchhHHHHhcC-Ce-EeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhh
Confidence 4332238999999774431111 12222 22 22222100 011111222222221 0000 00
Q ss_pred -------------------HHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHH
Q 011963 415 -------------------LKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCI 467 (474)
Q Consensus 415 -------------------~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~ 467 (474)
..-...+..++..+. ...++||||.+...+..++..|...|+ +. .+|+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~i 324 (442)
T COG1061 248 RARGTLRAENEARRIAIASERKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAI 324 (442)
T ss_pred hhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHH
Confidence 001122334444431 267999999999999999999998877 22 788899
Q ss_pred HHHhhc
Q 011963 468 VSHIKN 473 (474)
Q Consensus 468 i~~Fk~ 473 (474)
++.||.
T Consensus 325 l~~fr~ 330 (442)
T COG1061 325 LERFRT 330 (442)
T ss_pred HHHHHc
Confidence 999985
No 97
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.67 E-value=4.8e-15 Score=169.71 Aligned_cols=156 Identities=13% Similarity=0.067 Sum_probs=107.4
Q ss_pred CCCchhhHHHHHHHh----cC-CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHH
Q 011963 201 LFVNSWGIEFWKCYS----SA-KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSV 275 (474)
Q Consensus 201 i~~~~~Q~~~i~~~l----~g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 275 (474)
+..++||.+||..+. .| +.+|+++||| ||||++. +.++..++... ...++|||+|+++|+.|....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTG-SGKT~ta-i~li~~L~~~~-------~~~rVLfLvDR~~L~~Qa~~~ 482 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATG-TGKTRTA-IALMYRLLKAK-------RFRRILFLVDRSALGEQAEDA 482 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCC-CCHHHHH-HHHHHHHHhcC-------ccCeEEEEecHHHHHHHHHHH
Confidence 456788999998875 34 5899999999 9999884 44555555432 345999999999999999999
Q ss_pred HHhcccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHc-----CCCCCCCcceEEeccccccCC-----
Q 011963 276 CKPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL-----KAIDVSGVSLLVVDRLDSLSK----- 344 (474)
Q Consensus 276 ~~~l~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~-----~~~~l~~l~~lViDEad~ll~----- 344 (474)
+..+... +.....+++...... ........|+|+|...|...+.. ..+.+....+|||||||+-..
T Consensus 483 F~~~~~~~~~~~~~i~~i~~L~~---~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~ 559 (1123)
T PRK11448 483 FKDTKIEGDQTFASIYDIKGLED---KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEM 559 (1123)
T ss_pred HHhcccccccchhhhhchhhhhh---hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccccc
Confidence 9887322 222222332211111 11122468999999998765432 124567888999999999641
Q ss_pred -------------hhHHHHHHhhCCCCCcEEEEEccCCc
Q 011963 345 -------------GDTLSLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 345 -------------~~~l~~Il~~l~~~~q~llfSAT~~~ 370 (474)
...+..|+.++. .-.|+||||.-.
T Consensus 560 ~~~~~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r 596 (1123)
T PRK11448 560 SEGELQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPAL 596 (1123)
T ss_pred ccchhccchhhhHHHHHHHHHhhcC--ccEEEEecCCcc
Confidence 245677777653 568999999754
No 98
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.66 E-value=3.5e-15 Score=129.50 Aligned_cols=141 Identities=21% Similarity=0.219 Sum_probs=109.0
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHH
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDH 297 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~ 297 (474)
+.+++.+||| +|||..++..+...+... ...++||++|++.|+.|....+......++.+..+.++.....
T Consensus 1 ~~~~i~~~~G-~GKT~~~~~~~~~~~~~~--------~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (144)
T cd00046 1 RDVLLAAPTG-SGKTLAALLPILELLDSL--------KGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQ 71 (144)
T ss_pred CCEEEECCCC-CchhHHHHHHHHHHHhcc--------cCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhH
Confidence 4689999999 999999988888766552 3569999999999999999988887332677777887766655
Q ss_pred HHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHH---HHHhhCCCCCcEEEEEccC
Q 011963 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLS---LIRQSISGKPHTVVFNDCL 368 (474)
Q Consensus 298 q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~---~Il~~l~~~~q~llfSAT~ 368 (474)
+...... ..+|+|+|++.+...+...........++||||+|.+....... .+........+++++|||.
T Consensus 72 ~~~~~~~-~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 72 QEKLLSG-KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHHhcC-CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 5444444 79999999999998887766667788999999999998711111 2334446778999999995
No 99
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.64 E-value=3.6e-14 Score=160.57 Aligned_cols=96 Identities=8% Similarity=0.097 Sum_probs=74.9
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHH----HHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCc
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWK----CYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGP 257 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~----~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~ 257 (474)
+.+.+...+...||+ +.|. |.+.+. .+..|+++++.|||| +|||+||++|++..+.. +.
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~-----Q~~~~~~i~~~~~~~~~~~~eA~TG-~GKT~ayLlp~~~~~~~----------~~ 293 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPE-----QLKLAELVLDQLTHSEKSLIEAPTG-TGKTLGYLLPALYYAIT----------EK 293 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHH-----HHHHHHHHHHHhccCCcEEEECCCC-CchhHHHHHHHHHHhcC----------CC
Confidence 444566777778998 5677 998666 566789999999999 99999999999875541 33
Q ss_pred EEEEEeccHHHHHHHHH-HHHhcc-cC--CcEEEEEecCCC
Q 011963 258 FLLFLVSSQEKAAKVRS-VCKPLK-AF--GIHTVSLHPGAA 294 (474)
Q Consensus 258 ~alil~PtreLa~Qi~~-~~~~l~-~~--~i~v~~~~gg~~ 294 (474)
++||.+||++|..|+.. .+..+. .+ .++++.+.|+.+
T Consensus 294 ~vvi~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ 334 (850)
T TIGR01407 294 PVVISTNTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSN 334 (850)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchh
Confidence 89999999999999865 566663 23 488888887754
No 100
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.63 E-value=6.3e-14 Score=148.64 Aligned_cols=251 Identities=11% Similarity=0.073 Sum_probs=180.3
Q ss_pred HHHHHHhCCCCccccCCCchhhHHHHHHHhcC------CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEE
Q 011963 186 IENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA------KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFL 259 (474)
Q Consensus 186 i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g------~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~a 259 (474)
+.+.+....|. +|.- |.++|.-|..+ .+-|++.--| ||||++.++.++..+.. |.++
T Consensus 252 ~~~~~~~LPF~-LT~a-----Q~~vi~EI~~Dl~~~~~M~RLlQGDVG-SGKTvVA~laml~ai~~----------G~Q~ 314 (677)
T COG1200 252 LAKFLAALPFK-LTNA-----QKRVIKEILADLASPVPMNRLLQGDVG-SGKTVVALLAMLAAIEA----------GYQA 314 (677)
T ss_pred HHHHHHhCCCC-ccHH-----HHHHHHHHHhhhcCchhhHHHhccCcC-CCHHHHHHHHHHHHHHc----------CCee
Confidence 33444555664 5555 99999998765 2678889999 99999999999977664 7799
Q ss_pred EEEeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCH---HHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEE
Q 011963 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAI---DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (474)
Q Consensus 260 lil~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~---~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lV 335 (474)
.+++||--||.|-+..+..+ .++|++|..++|.... ......+.++..+|||||-.-+ +..+.+.++-++|
T Consensus 315 ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~LgLVI 389 (677)
T COG1200 315 ALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDKVEFHNLGLVI 389 (677)
T ss_pred EEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcceeecceeEEE
Confidence 99999999999999999997 7789999999998664 4445667786799999996533 3457789999999
Q ss_pred eccccccCChhHHHHHHhhCCC-CCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHH
Q 011963 336 VDRLDSLSKGDTLSLIRQSISG-KPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKI 414 (474)
Q Consensus 336 iDEad~ll~~~~l~~Il~~l~~-~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~ 414 (474)
|||-||+.- .+ +..+..-.. .+.+++||||.=| +.++-..+++-. |++=+....-...|...++..+ +.
T Consensus 390 iDEQHRFGV-~Q-R~~L~~KG~~~Ph~LvMTATPIP--RTLAlt~fgDld--vS~IdElP~GRkpI~T~~i~~~----~~ 459 (677)
T COG1200 390 IDEQHRFGV-HQ-RLALREKGEQNPHVLVMTATPIP--RTLALTAFGDLD--VSIIDELPPGRKPITTVVIPHE----RR 459 (677)
T ss_pred EeccccccH-HH-HHHHHHhCCCCCcEEEEeCCCch--HHHHHHHhcccc--chhhccCCCCCCceEEEEeccc----cH
Confidence 999999973 11 122222334 6889999999654 566667776653 3322222333345666666543 33
Q ss_pred HHHHHHHHHHhhccCCCCCCcEEEEEccch--------hHHHHHHHHhhC--CCccc--------chHHHHHHHhhc
Q 011963 415 LKGIQVLDHAYGDHFHSEPLKVLYIVGKDS--------KFQNLVSTLKCK--GYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 415 ~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~--------~a~~l~~~L~~~--gi~v~--------~~r~~~i~~Fk~ 473 (474)
..+++.+..-+.+ +.++.|.|+-++ .|..++..|... ++++. .+.+.+|..||+
T Consensus 460 ~~v~e~i~~ei~~-----GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~ 531 (677)
T COG1200 460 PEVYERIREEIAK-----GRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKE 531 (677)
T ss_pred HHHHHHHHHHHHc-----CCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHc
Confidence 4444566555554 559999998654 566788888743 44444 688899999986
No 101
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.57 E-value=3.3e-13 Score=131.89 Aligned_cols=240 Identities=12% Similarity=0.075 Sum_probs=165.9
Q ss_pred ccccCCCchhhHHHHHHHh----cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHH
Q 011963 197 QDNPLFVNSWGIEFWKCYS----SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (474)
Q Consensus 197 ~ptpi~~~~~Q~~~i~~~l----~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi 272 (474)
++||- |..+-..++ +..|+|+.|-|| +|||- .+.+.++..+. .|.++.|.+|.-+.+..+
T Consensus 97 ~Ls~~-----Q~~as~~l~q~i~~k~~~lv~AV~G-aGKTE-Mif~~i~~al~---------~G~~vciASPRvDVclEl 160 (441)
T COG4098 97 TLSPG-----QKKASNQLVQYIKQKEDTLVWAVTG-AGKTE-MIFQGIEQALN---------QGGRVCIASPRVDVCLEL 160 (441)
T ss_pred ccChh-----HHHHHHHHHHHHHhcCcEEEEEecC-CCchh-hhHHHHHHHHh---------cCCeEEEecCcccchHHH
Confidence 45555 887766654 447999999999 99995 45677777776 478999999999999999
Q ss_pred HHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC--hhHHHH
Q 011963 273 RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GDTLSL 350 (474)
Q Consensus 273 ~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~--~~~l~~ 350 (474)
+..++.. -.+..+.++||+++..- ...++|+|...|+.+-+ .+++|+|||+|.+-- ...+..
T Consensus 161 ~~Rlk~a-F~~~~I~~Lyg~S~~~f--------r~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~ 224 (441)
T COG4098 161 YPRLKQA-FSNCDIDLLYGDSDSYF--------RAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQY 224 (441)
T ss_pred HHHHHHh-hccCCeeeEecCCchhc--------cccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHH
Confidence 9888775 12577888999976443 34799999999987643 356899999999865 333333
Q ss_pred -HHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHH--HHHHHHHHhhc
Q 011963 351 -IRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILK--GIQVLDHAYGD 427 (474)
Q Consensus 351 -Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~--l~~lL~~ll~~ 427 (474)
+-+......-+|++|||.|.. +-+..+......+.+....+..+..+--+ +.+.....++.. |--.|..++++
T Consensus 225 Av~~ark~~g~~IylTATp~k~---l~r~~~~g~~~~~klp~RfH~~pLpvPkf-~w~~~~~k~l~r~kl~~kl~~~lek 300 (441)
T COG4098 225 AVKKARKKEGATIYLTATPTKK---LERKILKGNLRILKLPARFHGKPLPVPKF-VWIGNWNKKLQRNKLPLKLKRWLEK 300 (441)
T ss_pred HHHHhhcccCceEEEecCChHH---HHHHhhhCCeeEeecchhhcCCCCCCCce-EEeccHHHHhhhccCCHHHHHHHHH
Confidence 333344567799999999874 44555554444677776644444444444 444444544432 22234444444
Q ss_pred cCCCCCCcEEEEEccchhHHHHHHHHhh-CCCc-------ccchHHHHHHHhhc
Q 011963 428 HFHSEPLKVLYIVGKDSKFQNLVSTLKC-KGYS-------ISTGSNCIVSHIKN 473 (474)
Q Consensus 428 ~~~~~~~k~LVF~~s~~~a~~l~~~L~~-~gi~-------v~~~r~~~i~~Fk~ 473 (474)
+. ..+.|++||+++++..+.++..|+. .+.. .+.+|...|+.|||
T Consensus 301 q~-~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~ 353 (441)
T COG4098 301 QR-KTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRD 353 (441)
T ss_pred HH-hcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHHc
Confidence 43 2357999999999999999999943 3322 12678899999997
No 102
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.52 E-value=1.3e-13 Score=126.69 Aligned_cols=150 Identities=7% Similarity=0.038 Sum_probs=101.7
Q ss_pred CchhhHHHHHHHhc-------CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHH
Q 011963 203 VNSWGIEFWKCYSS-------AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSV 275 (474)
Q Consensus 203 ~~~~Q~~~i~~~l~-------g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 275 (474)
.++||.+++..+.. .+.+++.+||| ||||++++..+. .+.. .+||++|+..|+.|....
T Consensus 4 lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tG-sGKT~~~~~~~~-~l~~------------~~l~~~p~~~l~~Q~~~~ 69 (184)
T PF04851_consen 4 LRPYQQEAIARIINSLENKKEERRVLLNAPTG-SGKTIIALALIL-ELAR------------KVLIVAPNISLLEQWYDE 69 (184)
T ss_dssp E-HHHHHHHHHHHHHHHTTSGCSEEEEEESTT-SSHHHHHHHHHH-HHHC------------EEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCC-CCcChhhhhhhh-cccc------------ceeEecCHHHHHHHHHHH
Confidence 36789999999984 68999999999 999998875333 2221 899999999999999999
Q ss_pred HHhcccCCcEEEE------------EecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCC-----------CCCCCcc
Q 011963 276 CKPLKAFGIHTVS------------LHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA-----------IDVSGVS 332 (474)
Q Consensus 276 ~~~l~~~~i~v~~------------~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~-----------~~l~~l~ 332 (474)
+..+......... .......... ........+|+++|...|........ .......
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
T PF04851_consen 70 FDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDK-SESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFD 148 (184)
T ss_dssp HHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHH-HHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSES
T ss_pred HHHhhhhhhhhcccccccccccccccccccccccc-cccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCC
Confidence 9766332221111 1111111111 22223368999999999988765411 2234578
Q ss_pred eEEeccccccCChhHHHHHHhhCCCCCcEEEEEccCC
Q 011963 333 LLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLT 369 (474)
Q Consensus 333 ~lViDEad~ll~~~~l~~Il~~l~~~~q~llfSAT~~ 369 (474)
+||+||||++.....+..|+. .....+|+||||..
T Consensus 149 ~vI~DEaH~~~~~~~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 149 LVIIDEAHHYPSDSSYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EEEEETGGCTHHHHHHHHHHH--SSCCEEEEEESS-S
T ss_pred EEEEehhhhcCCHHHHHHHHc--CCCCeEEEEEeCcc
Confidence 999999999986333667766 55678999999975
No 103
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.45 E-value=6.3e-12 Score=138.63 Aligned_cols=173 Identities=10% Similarity=0.055 Sum_probs=110.3
Q ss_pred hHHHHHHHHHhCCCCc-----cccCCCchhhHHHHHHHh----c------CCcEEEEcCCCcchhHHHHHHHHHHHHHHh
Q 011963 182 CLNAIENAMRHDGVEQ-----DNPLFVNSWGIEFWKCYS----S------AKDILETSGSSSTIVQIAWIVATAADSIAR 246 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~-----ptpi~~~~~Q~~~i~~~l----~------g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~ 246 (474)
-++.+++.|+..=+.. ...+..+.+|..|+..+. . .+..+++.+|| ||||++.+.-+. .+...
T Consensus 213 ~~~~ll~~i~~~~~~~~~~~~~~k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TG-sGKT~t~~~la~-~l~~~ 290 (667)
T TIGR00348 213 KKERLLDFIRNFIIFDKDTGLVTKPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQG-SGKTLTMLFAAR-KALEL 290 (667)
T ss_pred CHHHHHHHHHheEEEECCCCceeeeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecC-CCccHHHHHHHH-HHHhh
Confidence 3445666665321111 124557788999998763 2 24799999999 999988755443 33321
Q ss_pred hhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHc--C
Q 011963 247 KEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL--K 324 (474)
Q Consensus 247 ~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~--~ 324 (474)
...+++|||+|+.+|..|+.+.+..+.... +.+..+.......+......|+|+|...|...+.. .
T Consensus 291 -------~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~-----~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~ 358 (667)
T TIGR00348 291 -------LKNPKVFFVVDRRELDYQLMKEFQSLQKDC-----AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEE 358 (667)
T ss_pred -------cCCCeEEEEECcHHHHHHHHHHHHhhCCCC-----CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhh
Confidence 146799999999999999999998873211 11122333333445443468999999999764332 1
Q ss_pred CCCCCCcc-eEEeccccccCChhHHHHHH-hhCCCCCcEEEEEccCCc
Q 011963 325 AIDVSGVS-LLVVDRLDSLSKGDTLSLIR-QSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 325 ~~~l~~l~-~lViDEad~ll~~~~l~~Il-~~l~~~~q~llfSAT~~~ 370 (474)
.+....-. +||+||||+... ..+..++ ..+| +...++||||.-.
T Consensus 359 ~~~~~~~~~lvIvDEaHrs~~-~~~~~~l~~~~p-~a~~lGfTaTP~~ 404 (667)
T TIGR00348 359 KFPVDRKEVVVIFDEAHRSQY-GELAKNLKKALK-NASFFGFTGTPIF 404 (667)
T ss_pred ccCCCCCCEEEEEEcCccccc-hHHHHHHHhhCC-CCcEEEEeCCCcc
Confidence 12111111 899999999874 3444444 4554 5789999999753
No 104
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.44 E-value=2.4e-12 Score=143.35 Aligned_cols=263 Identities=12% Similarity=0.038 Sum_probs=159.9
Q ss_pred CCCccccCCCchhhHHHHHHHhcC---C-cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHH
Q 011963 194 GVEQDNPLFVNSWGIEFWKCYSSA---K-DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (474)
Q Consensus 194 g~~~ptpi~~~~~Q~~~i~~~l~g---~-dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa 269 (474)
+|.....-....||..++..++.+ . .++..|||| +|||.+.+++++..+.... ....+.+++.|+|.++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG-~GKT~asl~~a~~~~~~~~------~~~~r~i~vlP~~t~i 259 (733)
T COG1203 187 KFKSFIEHEGYELQEKALELILRLEKRSLLVVLEAPTG-YGKTEASLILALALLDEKI------KLKSRVIYVLPFRTII 259 (733)
T ss_pred ccccccCchhhHHHHHHHHHHHhcccccccEEEEeCCC-CChHHHHHHHHHHHhhccc------cccceEEEEccHHHHH
Confidence 444444443356699999988765 3 788999999 8999999999998777631 1367999999999999
Q ss_pred HHHHHHHHhcccC-CcEEEEEecCCCHHHHHHH-------------HhcCCCcEEEEChHHHHHHHHc-CCCC-C--CCc
Q 011963 270 AKVRSVCKPLKAF-GIHTVSLHPGAAIDHQITG-------------LRSCEPEFLVSTPERLLKLVSL-KAID-V--SGV 331 (474)
Q Consensus 270 ~Qi~~~~~~l~~~-~i~v~~~~gg~~~~~q~~~-------------l~~~~~~IlV~TP~rL~~ll~~-~~~~-l--~~l 331 (474)
.++++.+....+. ++.....+|.....-.... ....-..++++||-.+.-.... ..+. + =..
T Consensus 260 e~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 339 (733)
T COG1203 260 EDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLT 339 (733)
T ss_pred HHHHHHHHhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHh
Confidence 9999999986333 3333223443332111100 0111345667777665542221 1121 1 124
Q ss_pred ceEEeccccccCC---hhHHHHHHhhC-CCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCccc--ccCCcEEEEE
Q 011963 332 SLLVVDRLDSLSK---GDTLSLIRQSI-SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVAS--QSACIIQSVN 405 (474)
Q Consensus 332 ~~lViDEad~ll~---~~~l~~Il~~l-~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~--~~~~i~q~~~ 405 (474)
..+|+||+|.+-+ ...+..++..+ .....+|++|||+|+...+.+..++.... .+........ .-..+.+...
T Consensus 340 S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~ 418 (733)
T COG1203 340 SLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGR-EVVENAKFCPKEDEPGLKRKER 418 (733)
T ss_pred hchhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhccc-ceeccccccccccccccccccc
Confidence 6899999999987 22333333333 25688999999999999988888887654 3333211000 0011111111
Q ss_pred EcCCchhHH-HHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHh
Q 011963 406 VCASDEEKI-LKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHI 471 (474)
Q Consensus 406 ~~~~~~~K~-~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~F 471 (474)
.+ ..+.. ..+...+..-++ .+.+++|.|||...|.++|..|+..+.++. .+|..++..+
T Consensus 419 ~~--~~~~~~~~~~~~~~~~~~-----~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l 486 (733)
T COG1203 419 VD--VEDGPQEELIELISEEVK-----EGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKEREL 486 (733)
T ss_pred hh--hhhhhhHhhhhcchhhhc-----cCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHH
Confidence 11 11110 011122222222 367999999999999999999999888444 6666666644
No 105
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.39 E-value=5.6e-11 Score=132.88 Aligned_cols=233 Identities=12% Similarity=0.089 Sum_probs=171.2
Q ss_pred hHHHHHHHhc----CC--cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh-c
Q 011963 207 GIEFWKCYSS----AK--DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-L 279 (474)
Q Consensus 207 Q~~~i~~~l~----g~--dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~-l 279 (474)
|..||..+.+ ++ |-|+|.--| -|||-+.+=.++-.++. |.++.|||||--||.|-|+.|+. |
T Consensus 599 Ql~AI~eVk~DM~~~kpMDRLiCGDVG-FGKTEVAmRAAFkAV~~----------GKQVAvLVPTTlLA~QHy~tFkeRF 667 (1139)
T COG1197 599 QLKAIEEVKRDMESGKPMDRLICGDVG-FGKTEVAMRAAFKAVMD----------GKQVAVLVPTTLLAQQHYETFKERF 667 (1139)
T ss_pred HHHHHHHHHHHhccCCcchheeecCcC-CcHHHHHHHHHHHHhcC----------CCeEEEEcccHHhHHHHHHHHHHHh
Confidence 9999998854 44 999999999 99999887666655543 77999999999999999999987 7
Q ss_pred ccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC--hhHHHHHHhh
Q 011963 280 KAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GDTLSLIRQS 354 (474)
Q Consensus 280 ~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~--~~~l~~Il~~ 354 (474)
++++++|..+..=.+..++ ...|..|.+||||||.--| ++.+.+.+|.+|||||=|++.- -+.++.+
T Consensus 668 ~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEqRFGVk~KEkLK~L--- 739 (1139)
T COG1197 668 AGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQRFGVKHKEKLKEL--- 739 (1139)
T ss_pred cCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechhhcCccHHHHHHHH---
Confidence 8899999887765555544 4566778899999996322 5778899999999999999975 5555555
Q ss_pred CCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCC
Q 011963 355 ISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPL 434 (474)
Q Consensus 355 l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~ 434 (474)
..+..++-+|||.=|....++..-+++-- .|...+ ...-.|..++..-++.--+. .+++++ .+++
T Consensus 740 -r~~VDvLTLSATPIPRTL~Msm~GiRdlS-vI~TPP---~~R~pV~T~V~~~d~~~ire----AI~REl------~RgG 804 (1139)
T COG1197 740 -RANVDVLTLSATPIPRTLNMSLSGIRDLS-VIATPP---EDRLPVKTFVSEYDDLLIRE----AILREL------LRGG 804 (1139)
T ss_pred -hccCcEEEeeCCCCcchHHHHHhcchhhh-hccCCC---CCCcceEEEEecCChHHHHH----HHHHHH------hcCC
Confidence 46788999999988877777777666643 344333 22334555554443221122 333333 2377
Q ss_pred cEEEEEccchhHHHHHHHHhhC----CCccc------chHHHHHHHhhc
Q 011963 435 KVLYIVGKDSKFQNLVSTLKCK----GYSIS------TGSNCIVSHIKN 473 (474)
Q Consensus 435 k~LVF~~s~~~a~~l~~~L~~~----gi~v~------~~r~~~i~~Fk~ 473 (474)
++-..+|..++.+.++..|+.. -|-+. .+-+++|.+|-+
T Consensus 805 QvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~ 853 (1139)
T COG1197 805 QVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN 853 (1139)
T ss_pred EEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc
Confidence 9999999999999999999765 22222 555689999965
No 106
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.39 E-value=3e-12 Score=139.04 Aligned_cols=179 Identities=13% Similarity=0.174 Sum_probs=126.8
Q ss_pred hHHHHH-HHHHhCCCCccccCCCchhhHHHH--HHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcE
Q 011963 182 CLNAIE-NAMRHDGVEQDNPLFVNSWGIEFW--KCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPF 258 (474)
Q Consensus 182 l~~~i~-~~l~~~g~~~ptpi~~~~~Q~~~i--~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ 258 (474)
+++.+. -.....|...++ .||..++ |.++.++++|..+||+ .|||++.-|-++..++... -.
T Consensus 207 ~~~k~~~~~~~~kgi~~~f-----ewq~ecls~~~~~e~~nliys~Pts-~gktlvaeilml~~~l~~r---------r~ 271 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLF-----EWQAECLSLPRLLERKNLIYSLPTS-AGKTLVAEILMLREVLCRR---------RN 271 (1008)
T ss_pred CchHHHHHHHHhhhHHHHH-----HHHHHHhcchhhhcccceEEeCCCc-cchHHHHHHHHHHHHHHHh---------hc
Confidence 444333 334445777776 6799987 6788889999999999 7999999998888877742 35
Q ss_pred EEEEeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHc--CCCCCCCcceEE
Q 011963 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL--KAIDVSGVSLLV 335 (474)
Q Consensus 259 alil~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~--~~~~l~~l~~lV 335 (474)
++.+.|.-..+..--..+..+ ..+|+.+-..+|+.+.... .+ .-++-|||-++-.-+++. ..-++..+.++|
T Consensus 272 ~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k-~~sv~i~tiEkanslin~lie~g~~~~~g~vv 346 (1008)
T KOG0950|consen 272 VLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RK-RESVAIATIEKANSLINSLIEQGRLDFLGMVV 346 (1008)
T ss_pred eeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc----cc-ceeeeeeehHhhHhHHHHHHhcCCccccCcEE
Confidence 666677665555555556665 6669999888877664432 12 468999999998776654 333456689999
Q ss_pred eccccccCC---hhHHHHHHhhC-----CCCCcEEEEEccCCccHHHHHHHhhcC
Q 011963 336 VDRLDSLSK---GDTLSLIRQSI-----SGKPHTVVFNDCLTYTSVPAVQNLLLG 382 (474)
Q Consensus 336 iDEad~ll~---~~~l~~Il~~l-----~~~~q~llfSAT~~~~v~~l~~~~l~~ 382 (474)
|||.|.+.| ...++.++..+ ....|+|++|||+|+ +. +++.||..
T Consensus 347 VdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N-~~-lL~~~L~A 399 (1008)
T KOG0950|consen 347 VDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPN-NS-LLQDWLDA 399 (1008)
T ss_pred EeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCC-hH-HHHHHhhh
Confidence 999999999 55555555433 344679999999998 33 34444443
No 107
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.38 E-value=2.8e-12 Score=141.64 Aligned_cols=225 Identities=15% Similarity=0.128 Sum_probs=155.1
Q ss_pred hhhHHHHHHHhcCC-cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHH-hcccC
Q 011963 205 SWGIEFWKCYSSAK-DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK-PLKAF 282 (474)
Q Consensus 205 ~~Q~~~i~~~l~g~-dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~-~l~~~ 282 (474)
+.|.+.++.+.+.+ ++++.||+| ||||++..+.++. + ....+++++.|..+.+..+++.+. .+...
T Consensus 1146 ~iqtqVf~~~y~~nd~v~vga~~g-sgkt~~ae~a~l~-----~------~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~ 1213 (1674)
T KOG0951|consen 1146 PIQTQVFTSLYNTNDNVLVGAPNG-SGKTACAELALLR-----P------DTIGRAVYIAPLEEIADEQYRDWEKKFSKL 1213 (1674)
T ss_pred CceEEEEeeeecccceEEEecCCC-CchhHHHHHHhcC-----C------ccceEEEEecchHHHHHHHHHHHHHhhccc
Confidence 33999999998765 799999999 9999999888874 1 246699999999999988776554 46444
Q ss_pred -CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC--------hhHHHHHHh
Q 011963 283 -GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--------GDTLSLIRQ 353 (474)
Q Consensus 283 -~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~--------~~~l~~Il~ 353 (474)
|.+++-+.|..+.+.. +.. .-+|+|+||++. ++++ ....++++|.||+|.+.+ .-.+..|..
T Consensus 1214 ~G~~~~~l~ge~s~~lk---l~~-~~~vii~tpe~~-d~lq----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~ 1284 (1674)
T KOG0951|consen 1214 LGLRIVKLTGETSLDLK---LLQ-KGQVIISTPEQW-DLLQ----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIAS 1284 (1674)
T ss_pred cCceEEecCCccccchH---Hhh-hcceEEechhHH-HHHh----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHH
Confidence 9999999988776642 222 358999999996 4443 667799999999999987 222888888
Q ss_pred hCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCC
Q 011963 354 SISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEP 433 (474)
Q Consensus 354 ~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~ 433 (474)
.+.++.+++.+|..+++ ..++ ..+ .+-..+.+.......+-.|.-+.+-..+.......+.+....-+..+. ..+
T Consensus 1285 q~~k~ir~v~ls~~lan-a~d~--ig~-s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a-~~~ 1359 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLAN-ARDL--IGA-SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHA-GNR 1359 (1674)
T ss_pred HHHhheeEEEeehhhcc-chhh--ccc-cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHh-cCC
Confidence 88899999999999988 3444 112 122245555442223323333333233333333332222222222222 236
Q ss_pred CcEEEEEccchhHHHHHHHHhh
Q 011963 434 LKVLYIVGKDSKFQNLVSTLKC 455 (474)
Q Consensus 434 ~k~LVF~~s~~~a~~l~~~L~~ 455 (474)
.+++||+.+++.|..++..|-.
T Consensus 1360 k~~~vf~p~rk~~~~~a~~~~~ 1381 (1674)
T KOG0951|consen 1360 KPAIVFLPTRKHARLVAVDLVT 1381 (1674)
T ss_pred CCeEEEeccchhhhhhhhccch
Confidence 7999999999999999887744
No 108
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.36 E-value=1.4e-11 Score=133.19 Aligned_cols=74 Identities=9% Similarity=-0.011 Sum_probs=60.1
Q ss_pred HHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcc-c---CCcEEE
Q 011963 212 KCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK-A---FGIHTV 287 (474)
Q Consensus 212 ~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~-~---~~i~v~ 287 (474)
..+..++.+++.|||| ||||+||++|++..+... .+.++||++||++|+.|+.+.+..+. . ..++++
T Consensus 11 ~al~~~~~lliEA~TG-tGKTlAYLlpal~~~~~~--------~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~ 81 (636)
T TIGR03117 11 TSLRQKRIGMLEASTG-VGKTLAMIMAALTMLKER--------PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAG 81 (636)
T ss_pred HHHhcCCeEEEEcCCC-CcHHHHHHHHHHHHHHhc--------cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEE
Confidence 4456678999999999 999999999999877632 25689999999999999999888875 2 367777
Q ss_pred EEecCCC
Q 011963 288 SLHPGAA 294 (474)
Q Consensus 288 ~~~gg~~ 294 (474)
.+.|+.+
T Consensus 82 ~lkGr~n 88 (636)
T TIGR03117 82 FFPGSQE 88 (636)
T ss_pred EEECCcc
Confidence 7776543
No 109
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=4.4e-11 Score=131.23 Aligned_cols=126 Identities=10% Similarity=0.041 Sum_probs=101.0
Q ss_pred ccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHH
Q 011963 197 QDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (474)
Q Consensus 197 ~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 276 (474)
.|+++ |.-+-=.+..|+ |+.+.|| +|||++..+|++-..+. |-.+-|++||--||.|=+..+
T Consensus 80 ~~~dv-----Qlig~l~l~~G~--iaEm~TG-EGKTLvA~l~a~l~al~----------G~~v~vvT~neyLA~Rd~e~~ 141 (796)
T PRK12906 80 RPFDV-----QIIGGIVLHEGN--IAEMKTG-EGKTLTATLPVYLNALT----------GKGVHVVTVNEYLSSRDATEM 141 (796)
T ss_pred CCchh-----HHHHHHHHhcCC--cccccCC-CCCcHHHHHHHHHHHHc----------CCCeEEEeccHHHHHhhHHHH
Confidence 46667 888877777777 8999999 99999999999976665 668999999999999999999
Q ss_pred Hhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHH-HHHHcC------CCCCCCcceEEeccccccC
Q 011963 277 KPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL-KLVSLK------AIDVSGVSLLVVDRLDSLS 343 (474)
Q Consensus 277 ~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~-~ll~~~------~~~l~~l~~lViDEad~ll 343 (474)
..+ ..+|++++++.|+.+........ .+||+.+|..-|- |+|+.+ ......+.|.||||+|.||
T Consensus 142 ~~~~~~LGl~vg~i~~~~~~~~r~~~y---~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 142 GELYRWLGLTVGLNLNSMSPDEKRAAY---NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred HHHHHhcCCeEEEeCCCCCHHHHHHHh---cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 998 77799999999988766544333 4799999997764 333331 1224578899999999886
No 110
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.28 E-value=9.3e-11 Score=126.46 Aligned_cols=237 Identities=12% Similarity=0.014 Sum_probs=150.5
Q ss_pred ccCCCchhhHHHHHHH----hcCC-cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHH
Q 011963 199 NPLFVNSWGIEFWKCY----SSAK-DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (474)
Q Consensus 199 tpi~~~~~Q~~~i~~~----l~g~-dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~ 273 (474)
+.|..+.||..||..+ ..|+ -+|+++.|| ||||... +.++..|++.. .--++|+|+-++.|+.|.+
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATG-TGKTrTA-iaii~rL~r~~-------~~KRVLFLaDR~~Lv~QA~ 232 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATG-TGKTRTA-IAIIDRLIKSG-------WVKRVLFLADRNALVDQAY 232 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecC-CCcceeH-HHHHHHHHhcc-------hhheeeEEechHHHHHHHH
Confidence 4567788999999765 4554 599999999 9999876 55676777643 3458999999999999999
Q ss_pred HHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcC-----CCCCCCcceEEeccccccCChhHH
Q 011963 274 SVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK-----AIDVSGVSLLVVDRLDSLSKGDTL 348 (474)
Q Consensus 274 ~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~-----~~~l~~l~~lViDEad~ll~~~~l 348 (474)
..+..+.+.+=.+..+.+- ... ..++|.|+|-..+..-+... .+.....+++|||||||=. ....
T Consensus 233 ~af~~~~P~~~~~n~i~~~-~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi-~~~~ 302 (875)
T COG4096 233 GAFEDFLPFGTKMNKIEDK-KGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI-YSEW 302 (875)
T ss_pred HHHHHhCCCccceeeeecc-cCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH-Hhhh
Confidence 9998885543322222221 111 03699999999998877654 3556779999999999866 4455
Q ss_pred HHHHhhCCCCCcEEEEEccCCccHHHHHHHhh-cCCceE-------------------EEccCC-ccccc----------
Q 011963 349 SLIRQSISGKPHTVVFNDCLTYTSVPAVQNLL-LGSINR-------------------LSLNQS-VASQS---------- 397 (474)
Q Consensus 349 ~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l-~~p~~~-------------------v~v~~~-~~~~~---------- 397 (474)
..|+.++..-.|.+ +||....+..-.-.|+ +.|+.. |.+... ....+
T Consensus 303 ~~I~dYFdA~~~gL--TATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~ 380 (875)
T COG4096 303 SSILDYFDAATQGL--TATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQ 380 (875)
T ss_pred HHHHHHHHHHHHhh--ccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhh
Confidence 57777765444333 7777665544444455 444312 111100 00000
Q ss_pred -CCc--E-EEEEEcCC-----chhHHHHHHHHHHHHhhccCC-CCCCcEEEEEccchhHHHHHHHHhhC
Q 011963 398 -ACI--I-QSVNVCAS-----DEEKILKGIQVLDHAYGDHFH-SEPLKVLYIVGKDSKFQNLVSTLKCK 456 (474)
Q Consensus 398 -~~i--~-q~~~~~~~-----~~~K~~~l~~lL~~ll~~~~~-~~~~k~LVF~~s~~~a~~l~~~L~~~ 456 (474)
..| . +.+-..+- .......+...|..++..... ...++|||||.+...|+.+...|.+.
T Consensus 381 g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ 449 (875)
T COG4096 381 GEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNE 449 (875)
T ss_pred ccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHh
Confidence 111 1 11111110 011224556677777776221 12689999999999999999999764
No 111
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.26 E-value=4.8e-10 Score=121.05 Aligned_cols=127 Identities=9% Similarity=0.057 Sum_probs=101.4
Q ss_pred ccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHH
Q 011963 197 QDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (474)
Q Consensus 197 ~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 276 (474)
.|+++ |.-+.-.++.|+ |+.+.|| +|||++..+|++...+. |..+.|++||-.||.|=+.++
T Consensus 78 r~ydv-----Qlig~l~Ll~G~--VaEM~TG-EGKTLvA~l~a~l~AL~----------G~~VhvvT~NdyLA~RDae~m 139 (764)
T PRK12326 78 RPFDV-----QLLGALRLLAGD--VIEMATG-EGKTLAGAIAAAGYALQ----------GRRVHVITVNDYLARRDAEWM 139 (764)
T ss_pred CcchH-----HHHHHHHHhCCC--cccccCC-CCHHHHHHHHHHHHHHc----------CCCeEEEcCCHHHHHHHHHHH
Confidence 45566 999998888885 7799999 99999999999966654 668999999999999999999
Q ss_pred Hhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHH-HHHHc------CCCCCCCcceEEeccccccCC
Q 011963 277 KPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL-KLVSL------KAIDVSGVSLLVVDRLDSLSK 344 (474)
Q Consensus 277 ~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~-~ll~~------~~~~l~~l~~lViDEad~ll~ 344 (474)
..+ ..+|++++++.++.+........ .+||+.+|..-|- |+|+. .......+.|.||||+|.||=
T Consensus 140 ~~ly~~LGLsvg~i~~~~~~~err~aY---~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLI 212 (764)
T PRK12326 140 GPLYEALGLTVGWITEESTPEERRAAY---ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLV 212 (764)
T ss_pred HHHHHhcCCEEEEECCCCCHHHHHHHH---cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhee
Confidence 998 77799999999998866543333 4799999987653 23322 223356788999999999873
No 112
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.24 E-value=3.5e-11 Score=130.48 Aligned_cols=155 Identities=11% Similarity=0.132 Sum_probs=118.4
Q ss_pred CchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh-c-c
Q 011963 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-L-K 280 (474)
Q Consensus 203 ~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~-l-~ 280 (474)
.+.||++.+..+-.+..++++|||. +|||++-. -+++..++.. ..--+|+++||.+|+.|+...+.. + .
T Consensus 512 Pd~WQ~elLDsvDr~eSavIVAPTS-aGKTfisf-Y~iEKVLRes-------D~~VVIyvaPtKaLVnQvsa~VyaRF~~ 582 (1330)
T KOG0949|consen 512 PDEWQRELLDSVDRNESAVIVAPTS-AGKTFISF-YAIEKVLRES-------DSDVVIYVAPTKALVNQVSANVYARFDT 582 (1330)
T ss_pred CcHHHHHHhhhhhcccceEEEeecc-CCceeccH-HHHHHHHhhc-------CCCEEEEecchHHHhhhhhHHHHHhhcc
Confidence 3579999999999999999999999 99998642 3455555432 344789999999999999987766 4 3
Q ss_pred cCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcC---CCCCCCcceEEeccccccCC---hhHHHHHHhh
Q 011963 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK---AIDVSGVSLLVVDRLDSLSK---GDTLSLIRQS 354 (474)
Q Consensus 281 ~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~---~~~l~~l~~lViDEad~ll~---~~~l~~Il~~ 354 (474)
..-.+.+++.|....+.++..+ .|+|+|+-|+.|-.+|... .-...+++++|+||+|++.. .--.++++..
T Consensus 583 ~t~~rg~sl~g~ltqEYsinp~---nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l 659 (1330)
T KOG0949|consen 583 KTFLRGVSLLGDLTQEYSINPW---NCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL 659 (1330)
T ss_pred CccccchhhHhhhhHHhcCCch---hceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh
Confidence 3355666777777666555422 5899999999999988773 34578999999999999987 3334445554
Q ss_pred CCCCCcEEEEEccCCcc
Q 011963 355 ISGKPHTVVFNDCLTYT 371 (474)
Q Consensus 355 l~~~~q~llfSAT~~~~ 371 (474)
.+ ++++++|||+.+.
T Consensus 660 i~--CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 660 IP--CPFLVLSATIGNP 674 (1330)
T ss_pred cC--CCeeEEecccCCH
Confidence 44 8899999999883
No 113
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.19 E-value=1.9e-09 Score=122.22 Aligned_cols=155 Identities=6% Similarity=-0.013 Sum_probs=105.2
Q ss_pred CCchhhHHHHHHHh----cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHH
Q 011963 202 FVNSWGIEFWKCYS----SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK 277 (474)
Q Consensus 202 ~~~~~Q~~~i~~~l----~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 277 (474)
+.++||.+++..++ .|.+.|++-..| .|||+-. +.++..+..... ....+|||||. .|..|..+++.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMG-LGKTlQa-IalL~~L~~~~~------~~gp~LIVvP~-SlL~nW~~Ei~ 239 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMG-LGKTLQT-ISLLGYLHEYRG------ITGPHMVVAPK-STLGNWMNEIR 239 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCC-ccHHHHH-HHHHHHHHHhcC------CCCCEEEEeCh-HHHHHHHHHHH
Confidence 34677999998885 577899999999 9999865 334444443221 12357999995 56677888888
Q ss_pred hcccCCcEEEEEecCCCHHHHH--HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-hhHHHHHHhh
Q 011963 278 PLKAFGIHTVSLHPGAAIDHQI--TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQS 354 (474)
Q Consensus 278 ~l~~~~i~v~~~~gg~~~~~q~--~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~ 354 (474)
.+.+ .++++.++|........ ..+..+.++|+|+|.+.+...... +.--+..+|||||||++-. ...+..++..
T Consensus 240 kw~p-~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~~Sklskalr~ 316 (1033)
T PLN03142 240 RFCP-VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNENSLLSKTMRL 316 (1033)
T ss_pred HHCC-CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 8753 46777777764433221 122334689999999988654321 2222467999999999988 5666667776
Q ss_pred CCCCCcEEEEEccCC
Q 011963 355 ISGKPHTVVFNDCLT 369 (474)
Q Consensus 355 l~~~~q~llfSAT~~ 369 (474)
+.. ...+++|+|.-
T Consensus 317 L~a-~~RLLLTGTPl 330 (1033)
T PLN03142 317 FST-NYRLLITGTPL 330 (1033)
T ss_pred hhc-CcEEEEecCCC
Confidence 654 34688899963
No 114
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.19 E-value=2.2e-10 Score=128.76 Aligned_cols=125 Identities=17% Similarity=0.194 Sum_probs=90.2
Q ss_pred hHHHHHH----HhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHH-HHHHHhcc-
Q 011963 207 GIEFWKC----YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV-RSVCKPLK- 280 (474)
Q Consensus 207 Q~~~i~~----~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi-~~~~~~l~- 280 (474)
|.+.... +..+..+++.|+|| ||||+||++|++... .+.++||++||++|+.|+ ...+..|.
T Consensus 250 Q~~ma~~V~~~l~~~~~~~~eA~tG-tGKT~ayllp~l~~~-----------~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~ 317 (820)
T PRK07246 250 QESFAKLVGEDFHDGPASFIEAQTG-IGKTYGYLLPLLAQS-----------DQRQIIVSVPTKILQDQIMAEEVKAIQE 317 (820)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCC-CcHHHHHHHHHHHhc-----------CCCcEEEEeCcHHHHHHHHHHHHHHHHH
Confidence 8884444 34567999999999 999999999988643 256899999999999999 47777773
Q ss_pred cCCcEEEEEecCCCH---HHH--------------------------------------------HHHHh-------cC-
Q 011963 281 AFGIHTVSLHPGAAI---DHQ--------------------------------------------ITGLR-------SC- 305 (474)
Q Consensus 281 ~~~i~v~~~~gg~~~---~~q--------------------------------------------~~~l~-------~~- 305 (474)
.+++.+.++.|+.++ .+- +..+. .|
T Consensus 318 ~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp 397 (820)
T PRK07246 318 VFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSL 397 (820)
T ss_pred hcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCC
Confidence 458888888877542 000 00000 00
Q ss_pred ---------------CCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC
Q 011963 306 ---------------EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK 344 (474)
Q Consensus 306 ---------------~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~ 344 (474)
..||||+.-.-|+..+.... .+..-.+|||||||+|.+
T Consensus 398 ~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 398 FYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLML 450 (820)
T ss_pred cchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHH
Confidence 35899998887776654432 256689999999999876
No 115
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.19 E-value=1.2e-09 Score=123.28 Aligned_cols=155 Identities=10% Similarity=0.020 Sum_probs=94.0
Q ss_pred CCCchhhHHHHHHHhcC--CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh
Q 011963 201 LFVNSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (474)
Q Consensus 201 i~~~~~Q~~~i~~~l~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 278 (474)
+...|||..+.-.++.. .-+|++-..| -|||+-.++-+-+.+... ..-++|||||+ .|..|...++..
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvG-LGKTIeAglil~~l~~~g--------~~~rvLIVvP~-sL~~QW~~El~~ 220 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVG-LGKTIEAGMIIHQQLLTG--------RAERVLILVPE-TLQHQWLVEMLR 220 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCc-CcHHHHHHHHHHHHHHcC--------CCCcEEEEcCH-HHHHHHHHHHHH
Confidence 44558899998777554 3688899999 999988865544433331 23479999997 788888887754
Q ss_pred cccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHc-CCCCCCCcceEEeccccccCC-----hhHHH
Q 011963 279 LKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSL-KAIDVSGVSLLVVDRLDSLSK-----GDTLS 349 (474)
Q Consensus 279 l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~-~~~~l~~l~~lViDEad~ll~-----~~~l~ 349 (474)
. +++....+.++....... ... . ..+++|+|-+.|...-.. ..+.-...++|||||||++-. ...+.
T Consensus 221 k--F~l~~~i~~~~~~~~~~~~~~~pf-~-~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~ 296 (956)
T PRK04914 221 R--FNLRFSLFDEERYAEAQHDADNPF-E-TEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQ 296 (956)
T ss_pred H--hCCCeEEEcCcchhhhcccccCcc-c-cCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHH
Confidence 2 244444333332111000 011 1 357999998877541110 111123577999999999962 22233
Q ss_pred HHHhhCCCCCcEEEEEccCC
Q 011963 350 LIRQSISGKPHTVVFNDCLT 369 (474)
Q Consensus 350 ~Il~~l~~~~q~llfSAT~~ 369 (474)
.+.......+.++++|||.-
T Consensus 297 ~v~~La~~~~~~LLLTATP~ 316 (956)
T PRK04914 297 VVEQLAEVIPGVLLLTATPE 316 (956)
T ss_pred HHHHHhhccCCEEEEEcCcc
Confidence 33222233457899999964
No 116
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.17 E-value=2.7e-09 Score=116.69 Aligned_cols=214 Identities=14% Similarity=0.143 Sum_probs=144.2
Q ss_pred CCCchhhHHHHHHHhcC----CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHH
Q 011963 201 LFVNSWGIEFWKCYSSA----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (474)
Q Consensus 201 i~~~~~Q~~~i~~~l~g----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 276 (474)
...+.-|..++..+... .-.++..-|| ||||-+|+ .++...+. .|-++|||+|-..|--|+...+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTG-SGKTEvYl-~~i~~~L~---------~GkqvLvLVPEI~Ltpq~~~rf 265 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTG-SGKTEVYL-EAIAKVLA---------QGKQVLVLVPEIALTPQLLARF 265 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCC-CcHHHHHH-HHHHHHHH---------cCCEEEEEeccccchHHHHHHH
Confidence 34566799999999766 5789999999 99999885 55555555 3679999999999999988887
Q ss_pred HhcccCCcEEEEEecCCCHHH---HHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC---------
Q 011963 277 KPLKAFGIHTVSLHPGAAIDH---QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--------- 344 (474)
Q Consensus 277 ~~l~~~~i~v~~~~gg~~~~~---q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~--------- 344 (474)
+.. +|..+..++++.+..+ .+....++...|+|||=-.| ..-|++|.++||||=|.-.-
T Consensus 266 ~~r--Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYh 336 (730)
T COG1198 266 KAR--FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYH 336 (730)
T ss_pred HHH--hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcC
Confidence 774 3578888888877443 45566677899999994322 23488999999999996543
Q ss_pred hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHH-----HHHHH
Q 011963 345 GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKI-----LKGIQ 419 (474)
Q Consensus 345 ~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~-----~~l~~ 419 (474)
..++...... -.++++|+-|||.+ ++.+..- .......+.+....+ ...-....++....+.... ..|++
T Consensus 337 ARdvA~~Ra~-~~~~pvvLgSATPS--LES~~~~-~~g~y~~~~L~~R~~-~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~ 411 (730)
T COG1198 337 ARDVAVLRAK-KENAPVVLGSATPS--LESYANA-ESGKYKLLRLTNRAG-RARLPRVEIIDMRKEPLETGRSLSPALLE 411 (730)
T ss_pred HHHHHHHHHH-HhCCCEEEecCCCC--HHHHHhh-hcCceEEEEcccccc-ccCCCcceEEeccccccccCccCCHHHHH
Confidence 2233333333 45799999999966 4444444 233333566655433 2212233344443333232 45666
Q ss_pred HHHHHhhccCCCCCCcEEEEEccch
Q 011963 420 VLDHAYGDHFHSEPLKVLYIVGKDS 444 (474)
Q Consensus 420 lL~~ll~~~~~~~~~k~LVF~~s~~ 444 (474)
.|..-+.. +.++|+|.|.+-
T Consensus 412 ~i~~~l~~-----geQ~llflnRRG 431 (730)
T COG1198 412 AIRKTLER-----GEQVLLFLNRRG 431 (730)
T ss_pred HHHHHHhc-----CCeEEEEEccCC
Confidence 66666655 569999999764
No 117
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.16 E-value=1.6e-09 Score=119.75 Aligned_cols=126 Identities=10% Similarity=0.088 Sum_probs=97.7
Q ss_pred ccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHH
Q 011963 197 QDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (474)
Q Consensus 197 ~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 276 (474)
.|+++ |.-.--.+..| -|+.+.|| +|||++..+|++-..+. |..+.|++||-.||.|=+.++
T Consensus 82 ~~ydV-----QliGg~~Lh~G--~iaEM~TG-EGKTLvA~l~a~l~al~----------G~~VhvvT~ndyLA~RD~e~m 143 (913)
T PRK13103 82 RHFDV-----QLIGGMTLHEG--KIAEMRTG-EGKTLVGTLAVYLNALS----------GKGVHVVTVNDYLARRDANWM 143 (913)
T ss_pred Ccchh-----HHHhhhHhccC--ccccccCC-CCChHHHHHHHHHHHHc----------CCCEEEEeCCHHHHHHHHHHH
Confidence 45556 76664445444 47899999 99999999999866554 668999999999999999999
Q ss_pred Hhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHH-HHHHHcC------CCCCCCcceEEeccccccC
Q 011963 277 KPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLK------AIDVSGVSLLVVDRLDSLS 343 (474)
Q Consensus 277 ~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL-~~ll~~~------~~~l~~l~~lViDEad~ll 343 (474)
..+ ..+|++|.++.++.+........ .+||++||..-| .|+|+.. ......+.|.||||+|.+|
T Consensus 144 ~~l~~~lGl~v~~i~~~~~~~err~~Y---~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 144 RPLYEFLGLSVGIVTPFQPPEEKRAAY---AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred HHHhcccCCEEEEECCCCCHHHHHHHh---cCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 998 66799999999988766544433 379999999876 2333332 1234789999999999986
No 118
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.11 E-value=2.4e-09 Score=117.73 Aligned_cols=128 Identities=9% Similarity=0.092 Sum_probs=97.4
Q ss_pred CCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHH
Q 011963 194 GVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (474)
Q Consensus 194 g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~ 273 (474)
|+. |+++ |.-+.=.+ ...-|+.+.|| .||||++.+|++-..+. |..+.||+++..||.+-+
T Consensus 74 G~r-~ydv-----Qlig~l~L--~~G~IaEm~TG-EGKTL~a~l~ayl~aL~----------G~~VhVvT~NdyLA~RD~ 134 (870)
T CHL00122 74 GLR-HFDV-----QLIGGLVL--NDGKIAEMKTG-EGKTLVATLPAYLNALT----------GKGVHIVTVNDYLAKRDQ 134 (870)
T ss_pred CCC-CCch-----HhhhhHhh--cCCccccccCC-CCchHHHHHHHHHHHhc----------CCceEEEeCCHHHHHHHH
Confidence 665 6666 76665444 44578999999 99999999999743332 668899999999999999
Q ss_pred HHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHH-----HHHHHc--CCCCCCCcceEEeccccccC
Q 011963 274 SVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-----LKLVSL--KAIDVSGVSLLVVDRLDSLS 343 (474)
Q Consensus 274 ~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL-----~~ll~~--~~~~l~~l~~lViDEad~ll 343 (474)
.++..+ ..+|+.|+++.++.+........ .+||+.+|..-| .|.|.. .......+.|.||||+|.||
T Consensus 135 e~m~pvy~~LGLsvg~i~~~~~~~err~aY---~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 135 EWMGQIYRFLGLTVGLIQEGMSSEERKKNY---LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHHHHHHHHcCCceeeeCCCCChHHHHHhc---CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 999998 77799999999998876543333 479999999644 343322 12235678999999999886
No 119
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.08 E-value=2.9e-09 Score=106.08 Aligned_cols=71 Identities=14% Similarity=0.016 Sum_probs=55.3
Q ss_pred chhhHH----HHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 204 NSWGIE----FWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 204 ~~~Q~~----~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
+++|.+ ++..+..|.++++.|||| +|||++|++|++..+....... .+..++|.++|..+..|....++.+
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTG-tGKTl~~L~~al~~~~~~~~~~----~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 10 YPIQYEFMEELKRVLDRGKIGILESPTG-TGKTLSLLCLTLTWLRSFPERI----QKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCC-cchhHHHHHHHHHHHHhCcccc----cccceeEEeccHHHHHHHHHHHHhc
Confidence 445999 555667789999999999 9999999999998776533110 2348899999999988887766654
No 120
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.08 E-value=2.9e-09 Score=106.08 Aligned_cols=71 Identities=14% Similarity=0.016 Sum_probs=55.3
Q ss_pred chhhHH----HHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 204 NSWGIE----FWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 204 ~~~Q~~----~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
+++|.+ ++..+..|.++++.|||| +|||++|++|++..+....... .+..++|.++|..+..|....++.+
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTG-tGKTl~~L~~al~~~~~~~~~~----~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 10 YPIQYEFMEELKRVLDRGKIGILESPTG-TGKTLSLLCLTLTWLRSFPERI----QKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCC-cchhHHHHHHHHHHHHhCcccc----cccceeEEeccHHHHHHHHHHHHhc
Confidence 445999 555667789999999999 9999999999998776533110 2348899999999988887766654
No 121
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.05 E-value=1.4e-08 Score=111.67 Aligned_cols=121 Identities=7% Similarity=0.041 Sum_probs=95.6
Q ss_pred hHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccCCcE
Q 011963 207 GIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIH 285 (474)
Q Consensus 207 Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~~i~ 285 (474)
|...--.+..| -|+.+.|| -||||++.+|++-..+. |..+.||+++..||..=..++..+ ..+|+.
T Consensus 90 QliGgl~Lh~G--~IAEM~TG-EGKTL~atlpaylnAL~----------GkgVhVVTvNdYLA~RDae~m~~vy~~LGLt 156 (939)
T PRK12902 90 QLIGGMVLHEG--QIAEMKTG-EGKTLVATLPSYLNALT----------GKGVHVVTVNDYLARRDAEWMGQVHRFLGLS 156 (939)
T ss_pred HHHhhhhhcCC--ceeeecCC-CChhHHHHHHHHHHhhc----------CCCeEEEeCCHHHHHhHHHHHHHHHHHhCCe
Confidence 66655445444 48899999 99999999999865544 668999999999999999999998 667999
Q ss_pred EEEEecCCCHHHHHHHHhcCCCcEEEEChHHH-----HHHHHc--CCCCCCCcceEEeccccccC
Q 011963 286 TVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-----LKLVSL--KAIDVSGVSLLVVDRLDSLS 343 (474)
Q Consensus 286 v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL-----~~ll~~--~~~~l~~l~~lViDEad~ll 343 (474)
|+++.++.+...... .- .+||+++|+..| .|.|.. .......+.|.||||+|.||
T Consensus 157 vg~i~~~~~~~err~--aY-~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 157 VGLIQQDMSPEERKK--NY-ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred EEEECCCCChHHHHH--hc-CCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 999998877654332 22 689999999887 555543 23456789999999999986
No 122
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.95 E-value=1.3e-08 Score=116.52 Aligned_cols=78 Identities=12% Similarity=0.111 Sum_probs=58.7
Q ss_pred hHHHHHHH----hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHH----HHHh
Q 011963 207 GIEFWKCY----SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS----VCKP 278 (474)
Q Consensus 207 Q~~~i~~~----l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~----~~~~ 278 (474)
|.+.+..+ ..++.+++.|||| +|||+||++|++..... .+-+++|-++|..|-.|+.. .+..
T Consensus 262 Q~~m~~~v~~~l~~~~~~~iEA~TG-tGKTlaYLlpa~~~a~~---------~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~ 331 (928)
T PRK08074 262 QQEMMKEVYTALRDSEHALIEAGTG-TGKSLAYLLPAAYFAKK---------KEEPVVISTYTIQLQQQLLEKDIPLLQK 331 (928)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCC-CchhHHHHHHHHHHhhc---------cCCeEEEEcCCHHHHHHHHHhhHHHHHH
Confidence 88855544 4668999999999 99999999999865543 35589999999999999875 2333
Q ss_pred cccCCcEEEEEecCCC
Q 011963 279 LKAFGIHTVSLHPGAA 294 (474)
Q Consensus 279 l~~~~i~v~~~~gg~~ 294 (474)
+-++.++++++-|..+
T Consensus 332 ~~~~~~~~~~lKGr~n 347 (928)
T PRK08074 332 IFPFPVEAALLKGRSH 347 (928)
T ss_pred HcCCCceEEEEEcccc
Confidence 3344677777776544
No 123
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.94 E-value=3.6e-08 Score=102.31 Aligned_cols=205 Identities=15% Similarity=0.141 Sum_probs=141.4
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEE------Eec----C----------CCHHHHHHHHhc---------
Q 011963 254 FTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVS------LHP----G----------AAIDHQITGLRS--------- 304 (474)
Q Consensus 254 ~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~------~~g----g----------~~~~~q~~~l~~--------- 304 (474)
...|++|||+|+|.-|.++-+.+..+...+..+.. =+| + ...-.....+-.
T Consensus 35 ftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~Frl 114 (442)
T PF06862_consen 35 FTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRL 114 (442)
T ss_pred CCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEE
Confidence 35899999999999999998888776322100000 011 0 000011111111
Q ss_pred ---------------CCCcEEEEChHHHHHHHHc-----C-CCCCCCcceEEeccccccCC--hhHHHHHHhhCC---C-
Q 011963 305 ---------------CEPEFLVSTPERLLKLVSL-----K-AIDVSGVSLLVVDRLDSLSK--GDTLSLIRQSIS---G- 357 (474)
Q Consensus 305 ---------------~~~~IlV~TP~rL~~ll~~-----~-~~~l~~l~~lViDEad~ll~--~~~l~~Il~~l~---~- 357 (474)
...|||||+|=-|.-.+.. . .-.|++++++|||.||.|+- .+.+..|+.+++ .
T Consensus 115 Gik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 115 GIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred eEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCC
Confidence 1469999999988887774 1 23389999999999999987 888888888873 1
Q ss_pred --------------------CCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCc------ccccCCcEEEEEEcC--C
Q 011963 358 --------------------KPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSV------ASQSACIIQSVNVCA--S 409 (474)
Q Consensus 358 --------------------~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~------~~~~~~i~q~~~~~~--~ 409 (474)
-+|+|+||+..++++..+....+.|....|.+.... ......|.|.+...+ +
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 289999999999999999998877764455443321 244567888888633 2
Q ss_pred ----chhHHHHHHHH-HHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc
Q 011963 410 ----DEEKILKGIQV-LDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS 461 (474)
Q Consensus 410 ----~~~K~~~l~~l-L~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~ 461 (474)
.+.++.++..- |-.+..... .+.+|||++|--+--+|..+|+..++...
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~---~~~~LIfIPSYfDfVRlRN~lk~~~~sF~ 328 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSK---MSGTLIFIPSYFDFVRLRNYLKKENISFV 328 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccC---CCcEEEEecchhhhHHHHHHHHhcCCeEE
Confidence 23455555553 333332444 78999999999999999999999998876
No 124
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.94 E-value=8.4e-08 Score=106.70 Aligned_cols=217 Identities=9% Similarity=0.010 Sum_probs=133.6
Q ss_pred HHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHH-hc-ccCCcEE
Q 011963 209 EFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK-PL-KAFGIHT 286 (474)
Q Consensus 209 ~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~-~l-~~~~i~v 286 (474)
+.+..+.+..=+++++||| ||||.. +|-+ ++..... .+....+.-|.|-=|.-+...+. .+ ...|-.|
T Consensus 57 ~i~~ai~~~~vvii~getG-sGKTTq--lP~~--lle~g~~-----~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 57 EILKAIEQNQVVIIVGETG-SGKTTQ--LPQF--LLEEGLG-----IAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred HHHHHHHhCCEEEEeCCCC-CChHHH--HHHH--HHhhhcc-----cCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 3344444555688899999 999964 3433 2332211 23355566787755555554443 34 2235445
Q ss_pred EEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccccc-CC----hhHHHHHHhhCCCCCcE
Q 011963 287 VSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL-SK----GDTLSLIRQSISGKPHT 361 (474)
Q Consensus 287 ~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~l-l~----~~~l~~Il~~l~~~~q~ 361 (474)
+.-+-..+. ... .-.|-+.|.|.|+..+....+ |+.++++||||||.= ++ .-.+..++...+.+..+
T Consensus 127 GY~iRfe~~------~s~-~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 127 GYSIRFESK------VSP-RTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred eEEEEeecc------CCC-CceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 443322111 111 457999999999998876443 899999999999953 33 45555666666777899
Q ss_pred EEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchh-HHHHHHHHHHHHhhccCCCCCCcEEEEE
Q 011963 362 VVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEE-KILKGIQVLDHAYGDHFHSEPLKVLYIV 440 (474)
Q Consensus 362 llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~-K~~~l~~lL~~ll~~~~~~~~~k~LVF~ 440 (474)
|++|||+.. +.|. .++++.. .+.+..... .|+-+|......+. =...+...+...+.. ..+.+|||.
T Consensus 199 IimSATld~--~rfs-~~f~~ap-vi~i~GR~f----PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~----~~GdILvFL 266 (845)
T COG1643 199 IIMSATLDA--ERFS-AYFGNAP-VIEIEGRTY----PVEIRYLPEAEADYILLDAIVAAVDIHLRE----GSGSILVFL 266 (845)
T ss_pred EEEecccCH--HHHH-HHcCCCC-EEEecCCcc----ceEEEecCCCCcchhHHHHHHHHHHHhccC----CCCCEEEEC
Confidence 999999985 4444 4555433 455554311 35555533332333 223333344444333 368999999
Q ss_pred ccchhHHHHHHHHhh
Q 011963 441 GKDSKFQNLVSTLKC 455 (474)
Q Consensus 441 ~s~~~a~~l~~~L~~ 455 (474)
+-..+.+.+++.|..
T Consensus 267 pG~~EI~~~~~~L~~ 281 (845)
T COG1643 267 PGQREIERTAEWLEK 281 (845)
T ss_pred CcHHHHHHHHHHHHh
Confidence 999999999999987
No 125
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.91 E-value=1.5e-08 Score=100.53 Aligned_cols=152 Identities=9% Similarity=-0.026 Sum_probs=92.9
Q ss_pred hhHHHHHHHh-------------cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHH
Q 011963 206 WGIEFWKCYS-------------SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (474)
Q Consensus 206 ~Q~~~i~~~l-------------~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi 272 (474)
||.+++..++ ..+..|++-.+| +|||+..+. ++..+....... ..-.+|||+|. .+..|.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~G-lGKT~~~i~-~~~~l~~~~~~~----~~~~~LIv~P~-~l~~~W 73 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMG-LGKTITAIA-LISYLKNEFPQR----GEKKTLIVVPS-SLLSQW 73 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TT-SSHHHHHHH-HHHHHHHCCTTS----S-S-EEEEE-T-TTHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCC-CCchhhhhh-hhhhhhhccccc----cccceeEeecc-chhhhh
Confidence 5777777662 346899999999 999987654 333344322110 12259999999 888999
Q ss_pred HHHHHhcc-cCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHH--------HHHHcCCCCCCCcceEEeccccccC
Q 011963 273 RSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL--------KLVSLKAIDVSGVSLLVVDRLDSLS 343 (474)
Q Consensus 273 ~~~~~~l~-~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~--------~ll~~~~~~l~~l~~lViDEad~ll 343 (474)
..++..+. +..+++..+.|+............ ..+++|+|.+.+. +.+.. -+..+|||||+|.+-
T Consensus 74 ~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~vvi~ty~~~~~~~~~~~~~~l~~-----~~~~~vIvDEaH~~k 147 (299)
T PF00176_consen 74 KEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLP-KYDVVITTYETLRKARKKKDKEDLKQ-----IKWDRVIVDEAHRLK 147 (299)
T ss_dssp HHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCC-CSSEEEEEHHHHH--TSTHTTHHHHT-----SEEEEEEETTGGGGT
T ss_pred hhhhccccccccccccccccccccccccccccc-cceeeecccccccccccccccccccc-----ccceeEEEecccccc
Confidence 99999985 336777777666512222122222 5899999999998 22222 237899999999996
Q ss_pred C-hhHHHHHHhhCCCCCcEEEEEccCCcc
Q 011963 344 K-GDTLSLIRQSISGKPHTVVFNDCLTYT 371 (474)
Q Consensus 344 ~-~~~l~~Il~~l~~~~q~llfSAT~~~~ 371 (474)
+ .......+..+. ....+++|||.-..
T Consensus 148 ~~~s~~~~~l~~l~-~~~~~lLSgTP~~n 175 (299)
T PF00176_consen 148 NKDSKRYKALRKLR-ARYRWLLSGTPIQN 175 (299)
T ss_dssp TTTSHHHHHHHCCC-ECEEEEE-SS-SSS
T ss_pred cccccccccccccc-cceEEeeccccccc
Confidence 6 444444444455 56789999995443
No 126
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.86 E-value=1.1e-08 Score=90.00 Aligned_cols=135 Identities=8% Similarity=-0.022 Sum_probs=80.2
Q ss_pred CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHH
Q 011963 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAID 296 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~ 296 (474)
|.=.++...+| +|||--.+--++..-+. .+.++|||.|||.++..++..++.+ ++++..-.-+.
T Consensus 4 g~~~~~d~hpG-aGKTr~vlp~~~~~~i~---------~~~rvLvL~PTRvva~em~~aL~~~---~~~~~t~~~~~--- 67 (148)
T PF07652_consen 4 GELTVLDLHPG-AGKTRRVLPEIVREAIK---------RRLRVLVLAPTRVVAEEMYEALKGL---PVRFHTNARMR--- 67 (148)
T ss_dssp TEEEEEE--TT-SSTTTTHHHHHHHHHHH---------TT--EEEEESSHHHHHHHHHHTTTS---SEEEESTTSS----
T ss_pred CceeEEecCCC-CCCcccccHHHHHHHHH---------ccCeEEEecccHHHHHHHHHHHhcC---CcccCceeeec---
Confidence 44457788999 99997665555544443 4779999999999999999887655 34433211111
Q ss_pred HHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-hhHHHHHHhhC--CCCCcEEEEEccCCccHH
Q 011963 297 HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQSI--SGKPHTVVFNDCLTYTSV 373 (474)
Q Consensus 297 ~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~l--~~~~q~llfSAT~~~~v~ 373 (474)
. ..++--|-|.|-+-+..++.+ ...+.+.+++|+||||.+-- .=....++..+ .....+|++|||.|....
T Consensus 68 ---~--~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG~~~ 141 (148)
T PF07652_consen 68 ---T--HFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAESGEAKVIFMTATPPGSED 141 (148)
T ss_dssp --------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT---
T ss_pred ---c--ccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHhhhccCeeEEEEeCCCCCCCC
Confidence 0 012445778899988887766 55578999999999998432 11112222222 234679999999987643
No 127
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.78 E-value=2.4e-07 Score=101.88 Aligned_cols=128 Identities=10% Similarity=0.042 Sum_probs=97.8
Q ss_pred CCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHH
Q 011963 194 GVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (474)
Q Consensus 194 g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~ 273 (474)
|. .|+++ |.-.--.+..|+ |+.+.|| -||||+..+|+.-..+. |-.+-|++..--||..=.
T Consensus 76 G~-r~ydV-----QliGglvLh~G~--IAEMkTG-EGKTLvAtLpayLnAL~----------GkgVhVVTvNdYLA~RDa 136 (925)
T PRK12903 76 GK-RPYDV-----QIIGGIILDLGS--VAEMKTG-EGKTITSIAPVYLNALT----------GKGVIVSTVNEYLAERDA 136 (925)
T ss_pred CC-CcCch-----HHHHHHHHhcCC--eeeecCC-CCccHHHHHHHHHHHhc----------CCceEEEecchhhhhhhH
Confidence 54 56677 888776667664 7899999 99999999999744443 557889999999999888
Q ss_pred HHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHH-HHHHcC------CCCCCCcceEEeccccccC
Q 011963 274 SVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL-KLVSLK------AIDVSGVSLLVVDRLDSLS 343 (474)
Q Consensus 274 ~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~-~ll~~~------~~~l~~l~~lViDEad~ll 343 (474)
.++..+ ..+|+.|+++..+.+........ .+||+++|..-|- |+|+-+ ......+.|.||||+|.+|
T Consensus 137 e~mg~vy~fLGLsvG~i~~~~~~~~rr~aY---~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 137 EEMGKVFNFLGLSVGINKANMDPNLKREAY---ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred HHHHHHHHHhCCceeeeCCCCChHHHHHhc---cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 888887 66799999999887766433333 5799999987753 344432 2235678899999999986
No 128
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.78 E-value=3.9e-08 Score=100.71 Aligned_cols=235 Identities=11% Similarity=0.062 Sum_probs=144.8
Q ss_pred CCchhhHHHHHHHhc-C--CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh
Q 011963 202 FVNSWGIEFWKCYSS-A--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (474)
Q Consensus 202 ~~~~~Q~~~i~~~l~-g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 278 (474)
|.+|||..++.-+.- | |.-|++-|.| +||||+-+-.+. .+ .-.||||+.+---+.|+..++..
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCG-AGKtLVGvTAa~-ti------------kK~clvLcts~VSVeQWkqQfk~ 367 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCG-AGKTLVGVTAAC-TI------------KKSCLVLCTSAVSVEQWKQQFKQ 367 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecC-CCCceeeeeeee-ee------------cccEEEEecCccCHHHHHHHHHh
Confidence 478999999998864 3 5889999999 899987543332 22 33899999999999999999999
Q ss_pred cccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHH-------------HHHHHcCCCCCCCcceEEeccccccCC
Q 011963 279 LKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-------------LKLVSLKAIDVSGVSLLVVDRLDSLSK 344 (474)
Q Consensus 279 l~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL-------------~~ll~~~~~~l~~l~~lViDEad~ll~ 344 (474)
++.. .-.++.++.+.. ..... ++.|+|+|-..+ +++|.. ....+||+||+|.+-.
T Consensus 368 wsti~d~~i~rFTsd~K-----e~~~~-~~gvvvsTYsMva~t~kRS~eaek~m~~l~~-----~EWGllllDEVHvvPA 436 (776)
T KOG1123|consen 368 WSTIQDDQICRFTSDAK-----ERFPS-GAGVVVTTYSMVAYTGKRSHEAEKIMDFLRG-----REWGLLLLDEVHVVPA 436 (776)
T ss_pred hcccCccceEEeecccc-----ccCCC-CCcEEEEeeehhhhcccccHHHHHHHHHHhc-----CeeeeEEeehhccchH
Confidence 9555 444555555432 22233 789999996544 344433 3456899999999876
Q ss_pred --hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHH-HhhcCCc---------------eEEEccC-------C---cc-c
Q 011963 345 --GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ-NLLLGSI---------------NRLSLNQ-------S---VA-S 395 (474)
Q Consensus 345 --~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~-~~l~~p~---------------~~v~v~~-------~---~~-~ 395 (474)
...+..|++. .-.++++||+-.+-..... .||-.|. ..|.-.. . +. .
T Consensus 437 ~MFRRVlsiv~a----HcKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~ 512 (776)
T KOG1123|consen 437 KMFRRVLSIVQA----HCKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLR 512 (776)
T ss_pred HHHHHHHHHHHH----HhhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHh
Confidence 4444444443 2358899998544222211 1222221 1111000 0 00 0
Q ss_pred ccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhh---CCCcccchHHHHHHHhh
Q 011963 396 QSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKC---KGYSISTGSNCIVSHIK 472 (474)
Q Consensus 396 ~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~---~gi~v~~~r~~~i~~Fk 472 (474)
....-.+.+++. ...|+.....++.. |. ..+.++|||..+.-.....|-.|.+ +|-....+|-.+++.|+
T Consensus 513 ~~t~kr~lLyvM--NP~KFraCqfLI~~----HE-~RgDKiIVFsDnvfALk~YAikl~KpfIYG~Tsq~ERm~ILqnFq 585 (776)
T KOG1123|consen 513 ENTRKRMLLYVM--NPNKFRACQFLIKF----HE-RRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQNERMKILQNFQ 585 (776)
T ss_pred hhhhhhheeeec--CcchhHHHHHHHHH----HH-hcCCeEEEEeccHHHHHHHHHHcCCceEECCCchhHHHHHHHhcc
Confidence 011112222223 24577444333433 22 2378999999888888888877765 35566688999999996
No 129
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.77 E-value=1.4e-07 Score=92.23 Aligned_cols=126 Identities=10% Similarity=0.120 Sum_probs=96.3
Q ss_pred ccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHH
Q 011963 197 QDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (474)
Q Consensus 197 ~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 276 (474)
.|.++ |..++=.+..|+ |+...|| =|||++..+|++-..+. |..+-|++.+..||..=+.++
T Consensus 77 ~p~~v-----Qll~~l~L~~G~--laEm~TG-EGKTli~~l~a~~~AL~----------G~~V~vvT~NdyLA~RD~~~~ 138 (266)
T PF07517_consen 77 RPYDV-----QLLGALALHKGR--LAEMKTG-EGKTLIAALPAALNALQ----------GKGVHVVTSNDYLAKRDAEEM 138 (266)
T ss_dssp ---HH-----HHHHHHHHHTTS--EEEESTT-SHHHHHHHHHHHHHHTT----------SS-EEEEESSHHHHHHHHHHH
T ss_pred cccHH-----HHhhhhhcccce--eEEecCC-CCcHHHHHHHHHHHHHh----------cCCcEEEeccHHHhhccHHHH
Confidence 46666 999998887777 9999999 99999999988865554 668899999999999999999
Q ss_pred Hhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHH-HHHHcC----C--CCCCCcceEEeccccccC
Q 011963 277 KPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL-KLVSLK----A--IDVSGVSLLVVDRLDSLS 343 (474)
Q Consensus 277 ~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~-~ll~~~----~--~~l~~l~~lViDEad~ll 343 (474)
..+ ..+|+++..++++.+........ .+||+.+|...+. |+|+.. . .....+.++||||+|.|+
T Consensus 139 ~~~y~~LGlsv~~~~~~~~~~~r~~~Y---~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 139 RPFYEFLGLSVGIITSDMSSEERREAY---AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHHTT--EEEEETTTEHHHHHHHH---HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHHhhhccccCccccCHHHHHHHH---hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 997 77799999999998865533333 3589999999886 344431 1 125789999999999887
No 130
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=7.9e-08 Score=99.15 Aligned_cols=258 Identities=15% Similarity=0.144 Sum_probs=164.0
Q ss_pred CccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchh--HHHHHHHHHHHHHHhhhhc---------------------CC
Q 011963 196 EQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIV--QIAWIVATAADSIARKEKE---------------------GF 252 (474)
Q Consensus 196 ~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGK--Tlaf~lp~l~~l~~~~~~~---------------------~~ 252 (474)
...|+. |.+.+..+.+-+|++..-.|-++|+ +-.|.|-+|++++..+... ..
T Consensus 215 ~pltal-----Q~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQ 289 (698)
T KOG2340|consen 215 EPLTAL-----QKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQ 289 (698)
T ss_pred CcchHH-----HHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhc
Confidence 356667 9999999999999987543322455 6679999999998744210 01
Q ss_pred CCCCcEEEEEeccHHHHHHHHHHHHhc-ccCCc-E--E------EEEecC----------------------CC------
Q 011963 253 SFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGI-H--T------VSLHPG----------------------AA------ 294 (474)
Q Consensus 253 ~~~~~~alil~PtreLa~Qi~~~~~~l-~~~~i-~--v------~~~~gg----------------------~~------ 294 (474)
-...|.+|||||+||-|..|-+.+..+ .+..- + | .-=++| ++
T Consensus 290 G~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriG 369 (698)
T KOG2340|consen 290 GFTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIG 369 (698)
T ss_pred CCCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhh
Confidence 134789999999999999998888776 33211 0 0 001121 00
Q ss_pred --HHHHHHHHhc--CCCcEEEEChHHHHHHHHcC-----CCC-CCCcceEEeccccccCC--hhHHHHHHhhCC---C--
Q 011963 295 --IDHQITGLRS--CEPEFLVSTPERLLKLVSLK-----AID-VSGVSLLVVDRLDSLSK--GDTLSLIRQSIS---G-- 357 (474)
Q Consensus 295 --~~~q~~~l~~--~~~~IlV~TP~rL~~ll~~~-----~~~-l~~l~~lViDEad~ll~--~~~l~~Il~~l~---~-- 357 (474)
..+..-.|-. ...|||||+|=-|.-++.+. .++ |+++.++|||.||.|+. .+.+..|+.++. .
T Consensus 370 l~ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~ 449 (698)
T KOG2340|consen 370 LAFTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQ 449 (698)
T ss_pred HHHHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccc
Confidence 0000011110 14699999998887777642 232 78999999999999997 888888888873 1
Q ss_pred -------------------CCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCc-----ccccCCcEEEEE--EcCC--
Q 011963 358 -------------------KPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSV-----ASQSACIIQSVN--VCAS-- 409 (474)
Q Consensus 358 -------------------~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~-----~~~~~~i~q~~~--~~~~-- 409 (474)
-+|+++||+-..+....+...++.+-...|...... ....-.|.|.+. .|.+
T Consensus 450 h~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~ 529 (698)
T KOG2340|consen 450 HDVDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSII 529 (698)
T ss_pred cCCChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcc
Confidence 169999999988888877777776653344333211 111112333322 2222
Q ss_pred --chhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc
Q 011963 410 --DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS 461 (474)
Q Consensus 410 --~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~ 461 (474)
.+.++.++..-+.--+.... ..-+|||.+|--+--++..+|.+.+++..
T Consensus 530 ~~~D~RFkyFv~~ImPq~~k~t---~s~~LiyIPSYfDFVRvRNy~K~e~i~F~ 580 (698)
T KOG2340|consen 530 ETPDARFKYFVDKIMPQLIKRT---ESGILIYIPSYFDFVRVRNYMKKEEISFV 580 (698)
T ss_pred cCchHHHHHHHHhhchhhcccc---cCceEEEecchhhHHHHHHHhhhhhcchH
Confidence 13355444433322222222 35679999999999999999999988765
No 131
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.72 E-value=5.5e-07 Score=96.57 Aligned_cols=152 Identities=12% Similarity=0.099 Sum_probs=102.2
Q ss_pred CchhhHHHHHHH----hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh
Q 011963 203 VNSWGIEFWKCY----SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (474)
Q Consensus 203 ~~~~Q~~~i~~~----l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 278 (474)
.++||.+.+..+ ..|-+.|..-..| -|||+-- |.+|..+...... +||. |||+|---|.. ..+++..
T Consensus 168 lr~YQveGlnWLi~l~engingILaDEMG-LGKTlQt-Is~l~yl~~~~~~-----~GPf-LVi~P~StL~N-W~~Ef~r 238 (971)
T KOG0385|consen 168 LRDYQLEGLNWLISLYENGINGILADEMG-LGKTLQT-ISLLGYLKGRKGI-----PGPF-LVIAPKSTLDN-WMNEFKR 238 (971)
T ss_pred cchhhhccHHHHHHHHhcCcccEeehhcc-cchHHHH-HHHHHHHHHhcCC-----CCCe-EEEeeHhhHHH-HHHHHHH
Confidence 456688877766 4577999999999 9999754 4555555553322 3555 88999666633 4555555
Q ss_pred cccCCcEEEEEecCCCHHHH--HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-hhHHHHHHhhC
Q 011963 279 LKAFGIHTVSLHPGAAIDHQ--ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQSI 355 (474)
Q Consensus 279 l~~~~i~v~~~~gg~~~~~q--~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~l 355 (474)
+.+ ++++++++|+...... ...+..++.+|+|+|-+..+.- ...+.--+.+|||||||||+=. ...+..+++.+
T Consensus 239 f~P-~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f 315 (971)
T KOG0385|consen 239 FTP-SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREF 315 (971)
T ss_pred hCC-CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchhhHHHHHHHHh
Confidence 543 7999999998654332 2233445799999999877642 1122223468999999999988 77777888887
Q ss_pred CCCCcEEEEEcc
Q 011963 356 SGKPHTVVFNDC 367 (474)
Q Consensus 356 ~~~~q~llfSAT 367 (474)
.... .++++.|
T Consensus 316 ~~~n-rLLlTGT 326 (971)
T KOG0385|consen 316 KTDN-RLLLTGT 326 (971)
T ss_pred cccc-eeEeeCC
Confidence 6543 3555566
No 132
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.72 E-value=2.4e-07 Score=96.18 Aligned_cols=250 Identities=9% Similarity=-0.043 Sum_probs=163.8
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+-+.+...+..+--+....+ |..+|..+.+|+++++...|. +||.++|.+..+..+.... ....++
T Consensus 271 ~~E~~~~~~~~~~~E~~~~~-----~~~~~~~~~~G~~~~~~~~~~-~GK~~~~~~~s~~~~~~~~--------~s~~~~ 336 (1034)
T KOG4150|consen 271 FWESIRSLLNKNTGESGIAI-----SLELLKFASEGRADGGNEARQ-AGKGTCPTSGSRKFQTLCH--------ATNSLL 336 (1034)
T ss_pred HHHHHHHHHhcccccchhhh-----hHHHHhhhhhcccccccchhh-cCCccCcccchhhhhhcCc--------ccceec
Confidence 33344444544444445555 999999999999999999999 9999999988876665542 446789
Q ss_pred EeccHHHHHHHHHHHHhc-c---cCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCC----CCCCcce
Q 011963 262 LVSSQEKAAKVRSVCKPL-K---AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI----DVSGVSL 333 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~---~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~----~l~~l~~ 333 (474)
+.||.||+..-.+.+... . ...--++-.+.|.+.-. .+.+.+.+.++|.+-|..+..-+--+.. .+-.+.+
T Consensus 337 ~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~-~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~ 415 (1034)
T KOG4150|consen 337 PSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETT-KSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELC 415 (1034)
T ss_pred chhHHHHhhccCCceEEEEEehhhhhcceeecccCCCchh-HHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHH
Confidence 999999987554433221 1 11111223344443333 3444444899999999988764433222 2445789
Q ss_pred EEeccccccCC------hhHHHHHHhhC-----CCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEE
Q 011963 334 LVVDRLDSLSK------GDTLSLIRQSI-----SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQ 402 (474)
Q Consensus 334 lViDEad~ll~------~~~l~~Il~~l-----~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q 402 (474)
.|+||+|..+. ..+|+.+++.+ +.+.|++-.|||+-..++-....+--+.+..|..+.+ +..-.+
T Consensus 416 ~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGS----Ps~~K~ 491 (1034)
T KOG4150|consen 416 KDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGS----PSSEKL 491 (1034)
T ss_pred hcccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCC----CCccce
Confidence 99999998877 66677776666 4678999999999887665444443344445555543 223455
Q ss_pred EEEEcCC--------chhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhh
Q 011963 403 SVNVCAS--------DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKC 455 (474)
Q Consensus 403 ~~~~~~~--------~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~ 455 (474)
.++.-++ .+.+......++.+++..+. ++|-||.++.-|+.|-.+.++
T Consensus 492 ~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~-----R~IAFC~~R~~CEL~~~~~R~ 547 (1034)
T KOG4150|consen 492 FVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGL-----RCIAFCPSRKLCELVLCLTRE 547 (1034)
T ss_pred EEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCC-----cEEEeccHHHHHHHHHHHHHH
Confidence 5554432 12344455567777777655 999999999999877655543
No 133
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.59 E-value=9.4e-07 Score=98.30 Aligned_cols=57 Identities=7% Similarity=0.066 Sum_probs=45.4
Q ss_pred hHHHHHHHh---cC------CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHH
Q 011963 207 GIEFWKCYS---SA------KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (474)
Q Consensus 207 Q~~~i~~~l---~g------~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~ 273 (474)
|.+.+..+. .+ +.+++-|||| +|||+||++|++..... .+-++||=+.|..|-.|+.
T Consensus 30 Q~~M~~~V~~al~~~~~~~~~~lviEAgTG-tGKTlaYLlPai~~A~~---------~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 30 QRQMIAEVAKTLAGEYLKDGRILVIEAGTG-VGKTLSYLLAGIPIARA---------EKKKLVISTATVALQEQLV 95 (697)
T ss_pred HHHHHHHHHHHHhcccccccceEEEECCCC-cchhHHHHHHHHHHHHH---------cCCeEEEEcCCHHHHHHHH
Confidence 888665553 33 5788999999 99999999999865554 3557888899999998885
No 134
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.58 E-value=4.7e-06 Score=92.95 Aligned_cols=226 Identities=11% Similarity=0.050 Sum_probs=141.2
Q ss_pred hHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-c-cCCc
Q 011963 207 GIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-K-AFGI 284 (474)
Q Consensus 207 Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~-~~~i 284 (474)
+...+..+.+..-++++..|| +|||.=----+++...... .....++--|.|-=|.-|++.+..= . ..|-
T Consensus 178 r~~Il~~i~~~qVvvIsGeTG-cGKTTQvpQfiLd~~~~~~-------~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~ 249 (924)
T KOG0920|consen 178 RDTILDAIEENQVVVISGETG-CGKTTQVPQFILDEAIESG-------AACNIICTQPRRISAISVAERVAKERGESLGE 249 (924)
T ss_pred HHHHHHHHHhCceEEEeCCCC-CCchhhhhHHHHHHHHhcC-------CCCeEEecCCchHHHHHHHHHHHHHhccccCC
Confidence 777788888888999999999 8998643222333333321 2445666679988888887765543 2 2254
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-hhHHHHHHhhC---CCCCc
Q 011963 285 HTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQSI---SGKPH 360 (474)
Q Consensus 285 ~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~l---~~~~q 360 (474)
.|+.-++..+. ... ...+++||.|-|+..+.. .-.+.++.++|+||+|.=.- .+-+.-+++.+ .++.+
T Consensus 250 ~VGYqvrl~~~------~s~-~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lk 321 (924)
T KOG0920|consen 250 EVGYQVRLESK------RSR-ETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLK 321 (924)
T ss_pred eeeEEEeeecc------cCC-ceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCce
Confidence 44443333221 112 357999999999999887 56688999999999996544 33333333333 36789
Q ss_pred EEEEEccCCccHHHHHHHhhcCCceEEEccCC-ccc--------------ccCCcEEE------------EEEcCCchhH
Q 011963 361 TVVFNDCLTYTSVPAVQNLLLGSINRLSLNQS-VAS--------------QSACIIQS------------VNVCASDEEK 413 (474)
Q Consensus 361 ~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~-~~~--------------~~~~i~q~------------~~~~~~~~~K 413 (474)
+|++|||+.. +....|++... .+.+... ... ....-.+. .... ..+..
T Consensus 322 vILMSAT~da---e~fs~YF~~~p-vi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~id 396 (924)
T KOG0920|consen 322 VILMSATLDA---ELFSDYFGGCP-VITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLW-EPEID 396 (924)
T ss_pred EEEeeeecch---HHHHHHhCCCc-eEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhc-ccccc
Confidence 9999999983 45566665544 3444321 000 00000001 0001 11223
Q ss_pred HHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhC
Q 011963 414 ILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK 456 (474)
Q Consensus 414 ~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~ 456 (474)
...+.+++.++..... .+.+|||-+...+...++..|...
T Consensus 397 ~~Li~~li~~I~~~~~---~GaILVFLPG~~eI~~~~~~L~~~ 436 (924)
T KOG0920|consen 397 YDLIEDLIEYIDEREF---EGAILVFLPGWEEILQLKELLEVN 436 (924)
T ss_pred HHHHHHHHHhcccCCC---CceEEEEcCCHHHHHHHHHHhhhc
Confidence 4455566666666655 899999999999999999999653
No 135
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.51 E-value=4.6e-06 Score=93.24 Aligned_cols=121 Identities=10% Similarity=0.060 Sum_probs=89.4
Q ss_pred hHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccCCcE
Q 011963 207 GIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIH 285 (474)
Q Consensus 207 Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~~i~ 285 (474)
|.-.=-.+..|+ |+-+.|| -||||+..||++-..+. |..+-||+..--||..=..++..+ ..+|+.
T Consensus 143 QLiGgivLh~G~--IAEM~TG-EGKTLvatlp~yLnAL~----------G~gVHvVTvNDYLA~RDaewm~p~y~flGLt 209 (1025)
T PRK12900 143 QLIGGIVLHSGK--ISEMATG-EGKTLVSTLPTFLNALT----------GRGVHVVTVNDYLAQRDKEWMNPVFEFHGLS 209 (1025)
T ss_pred HHhhhHHhhcCC--ccccCCC-CCcchHhHHHHHHHHHc----------CCCcEEEeechHhhhhhHHHHHHHHHHhCCe
Confidence 665544455554 7889999 99999999999855554 557788888899999888888887 666999
Q ss_pred EEEEecCCCHHHHHHHHhcCCCcEEEEChHHHH-HHHHc------CCCCCCCcceEEeccccccC
Q 011963 286 TVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL-KLVSL------KAIDVSGVSLLVVDRLDSLS 343 (474)
Q Consensus 286 v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~-~ll~~------~~~~l~~l~~lViDEad~ll 343 (474)
|+++..+.+...... .- .|||.+||..-|- |+|+- .......+.|.||||+|.+|
T Consensus 210 Vg~i~~~~~~~~Rr~--aY-~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 210 VGVILNTMRPEERRE--QY-LCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred eeeeCCCCCHHHHHH--hC-CCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 999988766554322 22 6899999986552 33322 12234678899999999876
No 136
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.50 E-value=4.5e-06 Score=91.52 Aligned_cols=215 Identities=10% Similarity=0.017 Sum_probs=130.4
Q ss_pred cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH
Q 011963 219 DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ 298 (474)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q 298 (474)
=.++.||.| ||||-+.+-++- ..... +...+|+|+..+.|+.++...++.....|+....-.++..
T Consensus 51 V~vVRSpMG-TGKTtaLi~wLk-~~l~~--------~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~---- 116 (824)
T PF02399_consen 51 VLVVRSPMG-TGKTTALIRWLK-DALKN--------PDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYI---- 116 (824)
T ss_pred eEEEECCCC-CCcHHHHHHHHH-HhccC--------CCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeecccccc----
Confidence 356779999 999976543333 22221 3669999999999999999888765322433222222211
Q ss_pred HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC---------hhHHHH-HHhhCCCCCcEEEEEccC
Q 011963 299 ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---------GDTLSL-IRQSISGKPHTVVFNDCL 368 (474)
Q Consensus 299 ~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~---------~~~l~~-Il~~l~~~~q~llfSAT~ 368 (474)
+.....+-|+++.+.|+.+- .-.+.+.++|||||+..++. ..++.. +...+.....+|++-||+
T Consensus 117 ---i~~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 117 ---IDGRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred ---ccccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 11113578888888886653 23466688999999988876 222222 223334567899999999
Q ss_pred CccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCC-----------------------------------chhH
Q 011963 369 TYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCAS-----------------------------------DEEK 413 (474)
Q Consensus 369 ~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~-----------------------------------~~~K 413 (474)
....-+++..+.++..+.+.++.- ...........++++ ..+.
T Consensus 191 n~~tvdFl~~~Rp~~~i~vI~n~y--~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (824)
T PF02399_consen 191 NDQTVDFLASCRPDENIHVIVNTY--ASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDE 268 (824)
T ss_pred CHHHHHHHHHhCCCCcEEEEEeee--ecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccch
Confidence 999999999876654334433320 000000000000000 0112
Q ss_pred HHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc
Q 011963 414 ILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS 461 (474)
Q Consensus 414 ~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~ 461 (474)
...+..++..+ .. +.++-||++|..-++.++++....+..+.
T Consensus 269 ~tF~~~L~~~L-~~-----gknIcvfsSt~~~~~~v~~~~~~~~~~Vl 310 (824)
T PF02399_consen 269 TTFFSELLARL-NA-----GKNICVFSSTVSFAEIVARFCARFTKKVL 310 (824)
T ss_pred hhHHHHHHHHH-hC-----CCcEEEEeChHHHHHHHHHHHHhcCCeEE
Confidence 23333344443 22 56888999999999999999988776665
No 137
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.49 E-value=2.8e-08 Score=109.41 Aligned_cols=159 Identities=16% Similarity=0.213 Sum_probs=111.7
Q ss_pred hHHHHHHHhc-CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccCCc
Q 011963 207 GIEFWKCYSS-AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGI 284 (474)
Q Consensus 207 Q~~~i~~~l~-g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~~i 284 (474)
|.+.+-++.. ..++++.|||| ||||++|-+.++..+... ++-+++||+|-.+|+..-.+-.... ...|+
T Consensus 932 q~~if~~~y~td~~~~~g~ptg-sgkt~~ae~a~~~~~~~~--------p~~kvvyIap~kalvker~~Dw~~r~~~~g~ 1002 (1230)
T KOG0952|consen 932 QTQIFHCLYHTDLNFLLGAPTG-SGKTVVAELAIFRALSYY--------PGSKVVYIAPDKALVKERSDDWSKRDELPGI 1002 (1230)
T ss_pred cceEEEEEeecchhhhhcCCcc-CcchhHHHHHHHHHhccC--------CCccEEEEcCCchhhcccccchhhhcccCCc
Confidence 7777766654 35899999999 999999999888776665 3569999999999987766555553 22289
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHc--CCCCCCCcceEEeccccccCC--hhHHHHHH-------h
Q 011963 285 HTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL--KAIDVSGVSLLVVDRLDSLSK--GDTLSLIR-------Q 353 (474)
Q Consensus 285 ~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~--~~~~l~~l~~lViDEad~ll~--~~~l~~Il-------~ 353 (474)
+++-+.|.+..+ ...+. .++|+|+||++.-.+.+. ..-.+.++..+|+||.|++.+ .+-++.|. .
T Consensus 1003 k~ie~tgd~~pd--~~~v~--~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~ 1078 (1230)
T KOG0952|consen 1003 KVIELTGDVTPD--VKAVR--EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISS 1078 (1230)
T ss_pred eeEeccCccCCC--hhhee--cCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeeccccCcc
Confidence 999999987766 22333 479999999998887763 444578899999999999987 33333222 2
Q ss_pred hCCCCCcEEEEEccCCccHHHHHHHh
Q 011963 354 SISGKPHTVVFNDCLTYTSVPAVQNL 379 (474)
Q Consensus 354 ~l~~~~q~llfSAT~~~~v~~l~~~~ 379 (474)
..+...|.+++|--+.+ ..+++.++
T Consensus 1079 ~t~~~vr~~glsta~~n-a~dla~wl 1103 (1230)
T KOG0952|consen 1079 QTEEPVRYLGLSTALAN-ANDLADWL 1103 (1230)
T ss_pred ccCcchhhhhHhhhhhc-cHHHHHHh
Confidence 22344555665433333 44555544
No 138
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.48 E-value=3.6e-06 Score=92.56 Aligned_cols=130 Identities=11% Similarity=0.016 Sum_probs=90.3
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHH---HHHH
Q 011963 225 GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDH---QITG 301 (474)
Q Consensus 225 ~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~---q~~~ 301 (474)
.+| ||||-.|+--+ ...+. .|-++|||+|...|+.|+...++..-+ +-.++.++++.+..+ .+..
T Consensus 168 ~~G-SGKTevyl~~i-~~~l~---------~Gk~vLvLvPEi~lt~q~~~rl~~~f~-~~~v~~lhS~l~~~~R~~~w~~ 235 (665)
T PRK14873 168 LPG-EDWARRLAAAA-AATLR---------AGRGALVVVPDQRDVDRLEAALRALLG-AGDVAVLSAGLGPADRYRRWLA 235 (665)
T ss_pred CCC-CcHHHHHHHHH-HHHHH---------cCCeEEEEecchhhHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHH
Confidence 359 99999996544 44443 266899999999999999999887421 256888998877554 3455
Q ss_pred HhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC------hhHHHHH--HhhCCCCCcEEEEEccCCccHH
Q 011963 302 LRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK------GDTLSLI--RQSISGKPHTVVFNDCLTYTSV 373 (474)
Q Consensus 302 l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~------~~~l~~I--l~~l~~~~q~llfSAT~~~~v~ 373 (474)
+..+.+.|||||-..+ ..-+.++.++||||=|.-.- .-+...+ ++.--.+..+|+-|||.+-+..
T Consensus 236 ~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 236 VLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred HhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHH
Confidence 5676799999995433 23478999999999885432 2222222 2222357889999999775443
No 139
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=4.1e-06 Score=90.34 Aligned_cols=221 Identities=11% Similarity=0.046 Sum_probs=132.9
Q ss_pred HHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHH-HHHhcccCCcEE--E
Q 011963 211 WKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS-VCKPLKAFGIHT--V 287 (474)
Q Consensus 211 i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~-~~~~l~~~~i~v--~ 287 (474)
..+|...-=||+|..|| ||||. .+|-+ |+...........+-..=|--|.|--|.-+.. +...|..+|-.| .
T Consensus 265 MEaIn~n~vvIIcGeTG-sGKTT--QvPQF--LYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYq 339 (1172)
T KOG0926|consen 265 MEAINENPVVIICGETG-SGKTT--QVPQF--LYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQ 339 (1172)
T ss_pred HHHhhcCCeEEEecCCC-CCccc--cchHH--HHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEE
Confidence 34444445688889999 99985 34433 55543332222222233355687766666553 444564444333 3
Q ss_pred EEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-hhHHHHHHhhC-------CC--
Q 011963 288 SLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQSI-------SG-- 357 (474)
Q Consensus 288 ~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~l-------~~-- 357 (474)
.-+.|.- .. .-.|.+.|-|-|+.=|.+ .|.|..-+.+||||||.=.- -+-|-.+|..+ ..
T Consensus 340 IRfd~ti--------~e-~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~ 409 (1172)
T KOG0926|consen 340 IRFDGTI--------GE-DTSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQ 409 (1172)
T ss_pred EEecccc--------CC-CceeEEecchHHHHHHHH-hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444422 11 457999999999876654 45678888999999996443 22222222222 11
Q ss_pred ----CCcEEEEEccCCccHHHHH--HHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCC
Q 011963 358 ----KPHTVVFNDCLTYTSVPAV--QNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHS 431 (474)
Q Consensus 358 ----~~q~llfSAT~~~~v~~l~--~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~ 431 (474)
....|++|||+- |.+|. ..++..|.-.|.|+.. . .+ +.-+|- ..-.+.++.+..+..+.-|.+.
T Consensus 410 ~~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdAR-Q--fP-VsIHF~----krT~~DYi~eAfrKtc~IH~kL 479 (1172)
T KOG0926|consen 410 CQIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDAR-Q--FP-VSIHFN----KRTPDDYIAEAFRKTCKIHKKL 479 (1172)
T ss_pred cccCceeEEEEeeeEE--ecccccCceecCCCCceeeeecc-c--Cc-eEEEec----cCCCchHHHHHHHHHHHHhhcC
Confidence 356899999986 44444 3444444336777653 1 11 222221 1223466667777776666666
Q ss_pred CCCcEEEEEccchhHHHHHHHHhhC
Q 011963 432 EPLKVLYIVGKDSKFQNLVSTLKCK 456 (474)
Q Consensus 432 ~~~k~LVF~~s~~~a~~l~~~L~~~ 456 (474)
+.+-+|||+.-..+++.|...|++.
T Consensus 480 P~G~ILVFvTGQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 480 PPGGILVFVTGQQEVDQLCEKLRKR 504 (1172)
T ss_pred CCCcEEEEEeChHHHHHHHHHHHhh
Confidence 7899999999999999999999875
No 140
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.46 E-value=2.2e-05 Score=83.74 Aligned_cols=215 Identities=10% Similarity=0.029 Sum_probs=127.6
Q ss_pred HHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHH-HHhc-ccCCcEE
Q 011963 209 EFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSV-CKPL-KAFGIHT 286 (474)
Q Consensus 209 ~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~-~~~l-~~~~i~v 286 (474)
+.+..+-..+-+|+..+|| ||||. .+|= .|....... .| ..-+--|.|-=|.-+... ..++ ..+|-.|
T Consensus 58 ~il~~ve~nqvlIviGeTG-sGKST--QipQ--yL~eaG~~~----~g-~I~~TQPRRVAavslA~RVAeE~~~~lG~~V 127 (674)
T KOG0922|consen 58 QILYAVEDNQVLIVIGETG-SGKST--QIPQ--YLAEAGFAS----SG-KIACTQPRRVAAVSLAKRVAEEMGCQLGEEV 127 (674)
T ss_pred HHHHHHHHCCEEEEEcCCC-CCccc--cHhH--HHHhccccc----CC-cEEeecCchHHHHHHHHHHHHHhCCCcCcee
Confidence 4455555667788999999 99984 2332 243332221 23 255566888766666643 3444 3345555
Q ss_pred EEEe--cCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-hhHHHHHHhhC---CCCCc
Q 011963 287 VSLH--PGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQSI---SGKPH 360 (474)
Q Consensus 287 ~~~~--gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~l---~~~~q 360 (474)
+..+ .+.. ...-.|.+.|-|.|+..+-. .-.|+.-.++||||||.=.= -+-+..+++.+ ..+..
T Consensus 128 GY~IRFed~t---------s~~TrikymTDG~LLRE~l~-Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~Lk 197 (674)
T KOG0922|consen 128 GYTIRFEDST---------SKDTRIKYMTDGMLLREILK-DPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLK 197 (674)
T ss_pred eeEEEecccC---------CCceeEEEecchHHHHHHhc-CCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCce
Confidence 4432 1211 11357999999999876543 33578889999999995322 33333333333 23568
Q ss_pred EEEEEccCCccHHHHHHHhhcC-CceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEE
Q 011963 361 TVVFNDCLTYTSVPAVQNLLLG-SINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYI 439 (474)
Q Consensus 361 ~llfSAT~~~~v~~l~~~~l~~-p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF 439 (474)
+|++|||+.. . ....|+.+ |+ +.+..... .|+..|..-+ .. +++...+...+.=|.....+-+|||
T Consensus 198 lIimSATlda--~-kfS~yF~~a~i--~~i~GR~f----PVei~y~~~p-~~---dYv~a~~~tv~~Ih~~E~~GDILvF 264 (674)
T KOG0922|consen 198 LIIMSATLDA--E-KFSEYFNNAPI--LTIPGRTF----PVEILYLKEP-TA---DYVDAALITVIQIHLTEPPGDILVF 264 (674)
T ss_pred EEEEeeeecH--H-HHHHHhcCCce--EeecCCCC----ceeEEeccCC-ch---hhHHHHHHHHHHHHccCCCCCEEEE
Confidence 9999999984 3 44455555 54 55544311 3555555433 22 3333444433332322237899999
Q ss_pred EccchhHHHHHHHHhhC
Q 011963 440 VGKDSKFQNLVSTLKCK 456 (474)
Q Consensus 440 ~~s~~~a~~l~~~L~~~ 456 (474)
-...++.+.+++.|.+.
T Consensus 265 LtGqeEIe~~~~~l~e~ 281 (674)
T KOG0922|consen 265 LTGQEEIEAACELLRER 281 (674)
T ss_pred eCCHHHHHHHHHHHHHH
Confidence 99999999999999765
No 141
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.45 E-value=1.8e-06 Score=96.91 Aligned_cols=142 Identities=8% Similarity=0.094 Sum_probs=88.1
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh--c----cc-C---CcEEE
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP--L----KA-F---GIHTV 287 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~--l----~~-~---~i~v~ 287 (474)
.++.+.++|| ||||++|+-.+++..... .....||+||+.+.-..+...+.. . .. . .++..
T Consensus 60 ~n~~~~M~TG-tGKT~~~~~~i~~l~~~~--------~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~ 130 (986)
T PRK15483 60 ANIDIKMETG-TGKTYVYTRLMYELHQKY--------GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELY 130 (986)
T ss_pred ceEEEEeCCC-CCHHHHHHHHHHHHHHHc--------CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEE
Confidence 4899999999 999999987776544332 345789999999998777766541 1 11 1 24444
Q ss_pred EEecCC-------CHHHHHHHHhc------CCCcEEEEChHHHHHH-HHcCC--------C--C---CCCc-ceEEeccc
Q 011963 288 SLHPGA-------AIDHQITGLRS------CEPEFLVSTPERLLKL-VSLKA--------I--D---VSGV-SLLVVDRL 339 (474)
Q Consensus 288 ~~~gg~-------~~~~q~~~l~~------~~~~IlV~TP~rL~~l-l~~~~--------~--~---l~~l-~~lViDEa 339 (474)
.+.++. ..-.+++.... +.++|+|.|-+.|..- +.... . . +... -.|||||.
T Consensus 131 ~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEP 210 (986)
T PRK15483 131 VINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEP 210 (986)
T ss_pred EEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECC
Confidence 444332 11223232322 1589999999988642 11110 1 1 1111 27899999
Q ss_pred cccCC-hhHHHHHHhhCCCCCcEEEEEccCCc
Q 011963 340 DSLSK-GDTLSLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 340 d~ll~-~~~l~~Il~~l~~~~q~llfSAT~~~ 370 (474)
|+|-. ......|.. +.+. -++.||||++.
T Consensus 211 h~~~~~~k~~~~i~~-lnpl-~~lrysAT~~~ 240 (986)
T PRK15483 211 HRFPRDNKFYQAIEA-LKPQ-MIIRFGATFPD 240 (986)
T ss_pred CCCCcchHHHHHHHh-cCcc-cEEEEeeecCC
Confidence 99965 445566643 3322 26779999987
No 142
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.35 E-value=2.3e-06 Score=94.94 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=55.2
Q ss_pred CCCccccCCCchhhHHHHHHH----hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHH
Q 011963 194 GVEQDNPLFVNSWGIEFWKCY----SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (474)
Q Consensus 194 g~~~ptpi~~~~~Q~~~i~~~----l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa 269 (474)
....|.|. |.+++..+ ..|+.+++.|||| +|||++|++|++...... +..++|.++|+.|-
T Consensus 12 ~~~~~r~~-----Q~~~~~~v~~a~~~~~~~~iEapTG-tGKTl~yL~~al~~~~~~---------~~~viist~t~~lq 76 (654)
T COG1199 12 PGFEPRPE-----QREMAEAVAEALKGGEGLLIEAPTG-TGKTLAYLLPALAYAREE---------GKKVIISTRTKALQ 76 (654)
T ss_pred CCCCCCHH-----HHHHHHHHHHHHcCCCcEEEECCCC-ccHHHHHHHHHHHHHHHc---------CCcEEEECCCHHHH
Confidence 34445555 98888554 3455699999999 999999999999777663 46899999999998
Q ss_pred HHHHHHHHhc
Q 011963 270 AKVRSVCKPL 279 (474)
Q Consensus 270 ~Qi~~~~~~l 279 (474)
.|+.+....+
T Consensus 77 ~q~~~~~~~~ 86 (654)
T COG1199 77 EQLLEEDLPI 86 (654)
T ss_pred HHHHHhhcch
Confidence 8887766553
No 143
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.35 E-value=3.6e-06 Score=94.56 Aligned_cols=177 Identities=12% Similarity=-0.007 Sum_probs=106.3
Q ss_pred CCCccccCCCchhhHHHHHHHhc--------CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEecc
Q 011963 194 GVEQDNPLFVNSWGIEFWKCYSS--------AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS 265 (474)
Q Consensus 194 g~~~ptpi~~~~~Q~~~i~~~l~--------g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Pt 265 (474)
+|..++.-.-=.||-.|+..+.. |-=+|--|.|| +|||+|=+= |+..|... ..|.+..|-.--
T Consensus 400 ~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTG-cGKT~aNAR-ImyaLsd~-------~~g~RfsiALGL 470 (1110)
T TIGR02562 400 YFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTG-CGKTLANAR-AMYALRDD-------KQGARFAIALGL 470 (1110)
T ss_pred hhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCC-cchHHHHHH-HHHHhCCC-------CCCceEEEEccc
Confidence 66544332223689999998865 22356669999 899997532 22222221 146677777777
Q ss_pred HHHHHHHHHHHHhcccC-CcEEEEEecCCCHHHHHH-------------------------------------------H
Q 011963 266 QEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQIT-------------------------------------------G 301 (474)
Q Consensus 266 reLa~Qi~~~~~~l~~~-~i~v~~~~gg~~~~~q~~-------------------------------------------~ 301 (474)
|.|-.|.-+.++.--++ .=...+++||....+..+ .
T Consensus 471 RTLTLQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~ 550 (1110)
T TIGR02562 471 RSLTLQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGR 550 (1110)
T ss_pred cceeccchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhh
Confidence 77877777777663222 233444555533221110 0
Q ss_pred Hhc-------CCCcEEEEChHHHHHHHHc---CCCCCC----CcceEEeccccccCC--hhHHHHHHhhCC-CCCcEEEE
Q 011963 302 LRS-------CEPEFLVSTPERLLKLVSL---KAIDVS----GVSLLVVDRLDSLSK--GDTLSLIRQSIS-GKPHTVVF 364 (474)
Q Consensus 302 l~~-------~~~~IlV~TP~rL~~ll~~---~~~~l~----~l~~lViDEad~ll~--~~~l~~Il~~l~-~~~q~llf 364 (474)
|.+ -...|+|||+..++-.... +...+. .=+.|||||+|.+-. ...|..++..+. -...++++
T Consensus 551 l~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLm 630 (1110)
T TIGR02562 551 LSLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLS 630 (1110)
T ss_pred hccChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 100 0247999999999876522 222111 135899999998876 555666665443 35789999
Q ss_pred EccCCccHHH-HHHHh
Q 011963 365 NDCLTYTSVP-AVQNL 379 (474)
Q Consensus 365 SAT~~~~v~~-l~~~~ 379 (474)
|||+|+.+.. +...|
T Consensus 631 SATLP~~l~~~L~~Ay 646 (1110)
T TIGR02562 631 SATLPPALVKTLFRAY 646 (1110)
T ss_pred eCCCCHHHHHHHHHHH
Confidence 9999998543 44444
No 144
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=98.32 E-value=1.3e-06 Score=84.53 Aligned_cols=86 Identities=24% Similarity=0.316 Sum_probs=73.9
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecC-CCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcce
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPG-AAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSL 333 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg-~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~ 333 (474)
..|.+|||+.+---|..+.+.++.+...+..|+-+++- ...++|+..|.+..++|.||||+||..|+..+.+.++++++
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~ 204 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLKR 204 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCeE
Confidence 58999999998888888888888875435666666655 47899999999878999999999999999999999999999
Q ss_pred EEecccc
Q 011963 334 LVVDRLD 340 (474)
Q Consensus 334 lViDEad 340 (474)
||||--|
T Consensus 205 ivlD~s~ 211 (252)
T PF14617_consen 205 IVLDWSY 211 (252)
T ss_pred EEEcCCc
Confidence 9999864
No 145
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.25 E-value=8.3e-06 Score=91.18 Aligned_cols=65 Identities=8% Similarity=0.058 Sum_probs=53.3
Q ss_pred hHHHHHH----HhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 207 GIEFWKC----YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 207 Q~~~i~~----~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
|.+.+.. +..|.++++.|||| +|||+|-+.|+|..+...+ ..++.+|.+.|..-..|+.++++.+
T Consensus 15 Q~~~m~~v~~~l~~~~~~llEsPTG-tGKTlslL~~aL~~~~~~~-------~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 15 QRSYMRDLKRSLDRGDEAILEMPSG-TGKTISLLSLILAYQQEKP-------EVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred HHHHHHHHHHHhccCCceEEeCCCC-CCccHHHHHHHHHHHHhcc-------ccccEEEEcccchHHHHHHHHHHhh
Confidence 8776654 45678999999999 9999999999998766432 2468899999999888888888885
No 146
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.22 E-value=4.4e-05 Score=86.01 Aligned_cols=161 Identities=14% Similarity=0.078 Sum_probs=99.3
Q ss_pred CCCchhhHHHHHHHhc----CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHH
Q 011963 201 LFVNSWGIEFWKCYSS----AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (474)
Q Consensus 201 i~~~~~Q~~~i~~~l~----g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 276 (474)
.+.++||...+..++. +.++|.+-..| -|||+-- +..|..|...... .||+ |||+|..-+.. ..+.+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmg-Lgktvqt-i~fl~~l~~~~~~-----~gpf-lvvvplst~~~-W~~ef 439 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMG-LGKTVQT-ITFLSYLFHSLQI-----HGPF-LVVVPLSTITA-WEREF 439 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcC-CCcchHH-HHHHHHHHHhhhc-----cCCe-EEEeehhhhHH-HHHHH
Confidence 3568889999888754 57999999999 9998521 2223333322111 4665 77788443322 34444
Q ss_pred HhcccCCcEEEEEecCCCHHHHHHHH---hcC-----CCcEEEEChHHHHHHH-HcCCCCCCCcceEEeccccccCC-hh
Q 011963 277 KPLKAFGIHTVSLHPGAAIDHQITGL---RSC-----EPEFLVSTPERLLKLV-SLKAIDVSGVSLLVVDRLDSLSK-GD 346 (474)
Q Consensus 277 ~~l~~~~i~v~~~~gg~~~~~q~~~l---~~~-----~~~IlV~TP~rL~~ll-~~~~~~l~~l~~lViDEad~ll~-~~ 346 (474)
..+. ++++++.+|.......++.. ... .+++|++|-+.++.-- ..+.+ ..++|+|||||+|-. ..
T Consensus 440 ~~w~--~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i---~w~~~~vDeahrLkN~~~ 514 (1373)
T KOG0384|consen 440 ETWT--DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKI---PWRYLLVDEAHRLKNDES 514 (1373)
T ss_pred HHHh--hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccC---CcceeeecHHhhcCchHH
Confidence 4443 78999999987765544433 222 4899999998875311 11222 246899999999987 55
Q ss_pred HHHHHHhhCCCCCcEEEEEccC-CccHHHHH
Q 011963 347 TLSLIRQSISGKPHTVVFNDCL-TYTSVPAV 376 (474)
Q Consensus 347 ~l~~Il~~l~~~~q~llfSAT~-~~~v~~l~ 376 (474)
.+-..+..+.-+.. ++.+.|. -+.+.+|.
T Consensus 515 ~l~~~l~~f~~~~r-llitgTPlQNsikEL~ 544 (1373)
T KOG0384|consen 515 KLYESLNQFKMNHR-LLITGTPLQNSLKELW 544 (1373)
T ss_pred HHHHHHHHhcccce-eeecCCCccccHHHHH
Confidence 55555666554443 4555553 44455554
No 147
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.13 E-value=9e-05 Score=77.33 Aligned_cols=59 Identities=19% Similarity=0.037 Sum_probs=45.6
Q ss_pred hHHHHHHHhcC-----CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 207 GIEFWKCYSSA-----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 207 Q~~~i~~~l~g-----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
|-+||..+..| +.-....-|| ||||++. .++...- +.-+||++|.+-||.|.|.+++.|
T Consensus 17 QP~AI~~Lv~gi~~g~~~QtLLGvTG-SGKTfT~-----AnVI~~~--------~rPtLV~AhNKTLAaQLy~Efk~f 80 (663)
T COG0556 17 QPEAIAELVEGIENGLKHQTLLGVTG-SGKTFTM-----ANVIAKV--------QRPTLVLAHNKTLAAQLYSEFKEF 80 (663)
T ss_pred cHHHHHHHHHHHhcCceeeEEeeecc-CCchhHH-----HHHHHHh--------CCCeEEEecchhHHHHHHHHHHHh
Confidence 88888887665 4677778899 9999864 2333321 335799999999999999999886
No 148
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.11 E-value=4.4e-05 Score=72.39 Aligned_cols=73 Identities=15% Similarity=0.047 Sum_probs=50.5
Q ss_pred CchhhHHHHHHHhcCCc-EEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh
Q 011963 203 VNSWGIEFWKCYSSAKD-ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (474)
Q Consensus 203 ~~~~Q~~~i~~~l~g~d-vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 278 (474)
.|+.|..||..++...+ .++.+|.| |||| ..+.-++..+..... ......+...||++||..-+.++...+..
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPG-TGKT-~~l~~~i~~~~~~~~-~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPG-TGKT-TTLASIIAQLLQRFK-SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STT-SSHH-HHHHHHHHHH--------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCC-CChH-HHHHHHHHHhccchh-hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 46679999999999999 99999999 9999 333445555522100 00012577999999999999999988887
No 149
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.11 E-value=0.00044 Score=75.19 Aligned_cols=151 Identities=10% Similarity=-0.005 Sum_probs=90.2
Q ss_pred hhhHHHHHHHh----cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcc
Q 011963 205 SWGIEFWKCYS----SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK 280 (474)
Q Consensus 205 ~~Q~~~i~~~l----~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 280 (474)
+||+..+..+. ++.--|+.-..| -|||.-- +..|..|...... .-.||||||.- +..|...++..+-
T Consensus 208 ~yQreGV~WL~~L~~q~~GGILgDeMG-LGKTIQi-isFLaaL~~S~k~------~~paLIVCP~T-ii~qW~~E~~~w~ 278 (923)
T KOG0387|consen 208 PYQREGVQWLWELYCQRAGGILGDEMG-LGKTIQI-ISFLAALHHSGKL------TKPALIVCPAT-IIHQWMKEFQTWW 278 (923)
T ss_pred HHHHHHHHHHHHHHhccCCCeeccccc-CccchhH-HHHHHHHhhcccc------cCceEEEccHH-HHHHHHHHHHHhC
Confidence 34998887774 345667778999 9999532 2333333332111 23789999954 5566767766662
Q ss_pred cCCcEEEEEecCCCHH--------HHHHH-H---hcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-hhH
Q 011963 281 AFGIHTVSLHPGAAID--------HQITG-L---RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDT 347 (474)
Q Consensus 281 ~~~i~v~~~~gg~~~~--------~q~~~-l---~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~-~~~ 347 (474)
..++|..++|..+.. +.... | ...+..|+|+|-..+.- ....+.--...++|+||.|++-. ..+
T Consensus 279 -p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrNpns~ 355 (923)
T KOG0387|consen 279 -PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRNPNSK 355 (923)
T ss_pred -cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccCCccH
Confidence 268888888765521 11111 1 11145789988655421 11222223467999999999998 666
Q ss_pred HHHHHhhCCCCCcEEEEEccC
Q 011963 348 LSLIRQSISGKPHTVVFNDCL 368 (474)
Q Consensus 348 l~~Il~~l~~~~q~llfSAT~ 368 (474)
+..-+..++. .+.|++|.|.
T Consensus 356 islackki~T-~~RiILSGTP 375 (923)
T KOG0387|consen 356 ISLACKKIRT-VHRIILSGTP 375 (923)
T ss_pred HHHHHHhccc-cceEEeeCcc
Confidence 6666666654 4445556653
No 150
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.06 E-value=0.00028 Score=77.93 Aligned_cols=59 Identities=12% Similarity=0.109 Sum_probs=46.3
Q ss_pred chhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 410 DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 410 ~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
...++..|+..|...+.. +.++||||+|+..|+.|+..|...|+++. .+|..++.+|++
T Consensus 424 ~~~qi~~Ll~eI~~~~~~-----g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~ 490 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVAR-----NERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL 490 (655)
T ss_pred ccchHHHHHHHHHHHHcC-----CCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc
Confidence 344666666666665544 56999999999999999999999999764 467788999875
No 151
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.06 E-value=0.00027 Score=72.94 Aligned_cols=236 Identities=10% Similarity=0.010 Sum_probs=127.0
Q ss_pred HHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEE
Q 011963 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (474)
Q Consensus 183 ~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil 262 (474)
++...+.|+.. .--||+. ++...+..+.+..-++++..|| ||||.-.=-.++...... ...+..-
T Consensus 33 s~rY~~ilk~R---~~LPvw~--~k~~F~~~l~~nQ~~v~vGetg-sGKttQiPq~~~~~~~~~---------~~~v~CT 97 (699)
T KOG0925|consen 33 SQRYYDILKKR---RELPVWE--QKEEFLKLLLNNQIIVLVGETG-SGKTTQIPQFVLEYELSH---------LTGVACT 97 (699)
T ss_pred cHHHHHHHHHH---hcCchHH--hHHHHHHHHhcCceEEEEecCC-CCccccCcHHHHHHHHhh---------ccceeec
Confidence 33334444433 3345533 1344555566677889999999 999853211122222221 2244555
Q ss_pred eccHHHHHHHHH-HHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 263 VSSQEKAAKVRS-VCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 263 ~PtreLa~Qi~~-~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
-|.|--|.++.. +...+ -.+|-.|+..+.=.+...-... +-.+|-|.|+.-.- ..-.++.-.+||+||||
T Consensus 98 Qprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~-------Lky~tDgmLlrEam-s~p~l~~y~viiLDeah 169 (699)
T KOG0925|consen 98 QPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTL-------LKYCTDGMLLREAM-SDPLLGRYGVIILDEAH 169 (699)
T ss_pred CchHHHHHHHHHHHHHHhccccchhccccccccccCChhHH-------HHHhcchHHHHHHh-hCcccccccEEEechhh
Confidence 688877777764 34444 2224444322111000000000 11345555543211 23347788999999999
Q ss_pred ccCC-----hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHH
Q 011963 341 SLSK-----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKIL 415 (474)
Q Consensus 341 ~ll~-----~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~ 415 (474)
.=.- .-.++.++..- ++..++++|||+-. .-.+.|++++. .+.|... + .++-+|..- .+.+-++
T Consensus 170 ERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a---~Kfq~yf~n~P-ll~vpg~-~----PvEi~Yt~e-~erDylE 238 (699)
T KOG0925|consen 170 ERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDA---EKFQRYFGNAP-LLAVPGT-H----PVEIFYTPE-PERDYLE 238 (699)
T ss_pred hhhHHHHHHHHHHHHHHhhC-CCceEEEeecccch---HHHHHHhCCCC-eeecCCC-C----ceEEEecCC-CChhHHH
Confidence 5332 33344444443 48899999999764 34456666665 5666542 1 233333322 2444455
Q ss_pred HHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhh
Q 011963 416 KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKC 455 (474)
Q Consensus 416 ~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~ 455 (474)
..+..+.++-.... .+-+|||....++.+...+.+..
T Consensus 239 aairtV~qih~~ee---~GDilvFLtgeeeIe~aC~~i~r 275 (699)
T KOG0925|consen 239 AAIRTVLQIHMCEE---PGDILVFLTGEEEIEDACRKISR 275 (699)
T ss_pred HHHHHHHHHHhccC---CCCEEEEecCHHHHHHHHHHHHH
Confidence 44444445544444 78999999998887777766653
No 152
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.02 E-value=0.0006 Score=75.25 Aligned_cols=234 Identities=9% Similarity=-0.029 Sum_probs=134.9
Q ss_pred chhhHHHHHHHhc---CC-------cEEEEcCCCcchhHHHHHHHHHHHHHHh-hhhcCCCCCCcEEEEEeccHHHHHHH
Q 011963 204 NSWGIEFWKCYSS---AK-------DILETSGSSSTIVQIAWIVATAADSIAR-KEKEGFSFTGPFLLFLVSSQEKAAKV 272 (474)
Q Consensus 204 ~~~Q~~~i~~~l~---g~-------dvl~~A~TG~SGKTlaf~lp~l~~l~~~-~~~~~~~~~~~~alil~PtreLa~Qi 272 (474)
.|||.+.+..+.. |. -.|++=..| +|||+-. ++.|..+++. +.... .--++|||+|. -|+.-.
T Consensus 240 rPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~G-lGKTlq~-IsflwtlLrq~P~~~~---~~~k~lVV~P~-sLv~nW 313 (776)
T KOG0390|consen 240 RPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPG-LGKTLQC-ISFIWTLLRQFPQAKP---LINKPLVVAPS-SLVNNW 313 (776)
T ss_pred CchHHHHHHHHHhhhhcccccCCCCceEeeCCCC-cchHHHH-HHHHHHHHHhCcCccc---cccccEEEccH-HHHHHH
Confidence 4569999987743 22 234444567 9999876 4455555553 21100 12478999994 588889
Q ss_pred HHHHHhccc-CCcEEEEEecCCCH--HHHHHHHhc----CCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-
Q 011963 273 RSVCKPLKA-FGIHTVSLHPGAAI--DHQITGLRS----CEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK- 344 (474)
Q Consensus 273 ~~~~~~l~~-~~i~v~~~~gg~~~--~~q~~~l~~----~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~- 344 (474)
+.++.++.. ..|....++|+... ..+...+.- ...-|+|-+-+.+.++++. +....+.+||+||.|++=.
T Consensus 314 kkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 314 KKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch
Confidence 999999844 47888888888773 333222211 1234677777777665543 3345678999999999977
Q ss_pred hhHHHHHHhhCCCCCcEEEEEccC-CccHHHHHHHh-hcCCceEEEcc--------------CCcccccCCcEEEEEEcC
Q 011963 345 GDTLSLIRQSISGKPHTVVFNDCL-TYTSVPAVQNL-LLGSINRLSLN--------------QSVASQSACIIQSVNVCA 408 (474)
Q Consensus 345 ~~~l~~Il~~l~~~~q~llfSAT~-~~~v~~l~~~~-l~~p~~~v~v~--------------~~~~~~~~~i~q~~~~~~ 408 (474)
...+...+..+.. +..|++|.|+ -+++.++...+ +-+|. .+... +.........+ .
T Consensus 392 ~s~~~kaL~~l~t-~rRVLLSGTp~QNdl~EyFnlL~fvrP~-~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~-~----- 463 (776)
T KOG0390|consen 392 DSLTLKALSSLKT-PRRVLLTGTPIQNDLKEYFNLLDFVRPG-FLGSISSFKKKFEIPILRGRDADASEEDRE-R----- 463 (776)
T ss_pred hhHHHHHHHhcCC-CceEEeeCCcccccHHHHHHHHhhcChh-hccchHHHHHHhhcccccccCCCcchhhhh-h-----
Confidence 5555556666554 3456677875 34455544433 34443 11111 00001111111 1
Q ss_pred CchhHHHHHHHHHHHHhhccCC-------CCCCcEEEEEccchhHHHHHHHHhh
Q 011963 409 SDEEKILKGIQVLDHAYGDHFH-------SEPLKVLYIVGKDSKFQNLVSTLKC 455 (474)
Q Consensus 409 ~~~~K~~~l~~lL~~ll~~~~~-------~~~~k~LVF~~s~~~a~~l~~~L~~ 455 (474)
+.|+..|..+...++-.+.- ....=.+||||.-..=..++..|..
T Consensus 464 --~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~ 515 (776)
T KOG0390|consen 464 --EERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLD 515 (776)
T ss_pred --HHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHH
Confidence 34676677777666544430 0012357999877766666666644
No 153
>COG4889 Predicted helicase [General function prediction only]
Probab=97.99 E-value=2.3e-05 Score=85.36 Aligned_cols=127 Identities=11% Similarity=0.111 Sum_probs=86.5
Q ss_pred chhhHHHHHHHhcC-----CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh
Q 011963 204 NSWGIEFWKCYSSA-----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (474)
Q Consensus 204 ~~~Q~~~i~~~l~g-----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 278 (474)
++||..||....+| |--|+ +..| +|||+.-+ -+.+.+.. .++|+|+|+-.|..|..+....
T Consensus 163 R~hQq~Aid~a~~~F~~n~RGkLI-MAcG-TGKTfTsL-kisEala~-----------~~iL~LvPSIsLLsQTlrew~~ 228 (1518)
T COG4889 163 RPHQQTAIDAAKEGFSDNDRGKLI-MACG-TGKTFTSL-KISEALAA-----------ARILFLVPSISLLSQTLREWTA 228 (1518)
T ss_pred ChhHHHHHHHHHhhcccccCCcEE-EecC-CCccchHH-HHHHHHhh-----------hheEeecchHHHHHHHHHHHhh
Confidence 45599999999887 33333 3457 89998763 34444433 4899999999999999888877
Q ss_pred cccCCcEEEEEecCCCHHHHHHHH------------------------hcCCCcEEEEChHHHHHHHHcCCCCCCCcceE
Q 011963 279 LKAFGIHTVSLHPGAAIDHQITGL------------------------RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLL 334 (474)
Q Consensus 279 l~~~~i~v~~~~gg~~~~~q~~~l------------------------~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~l 334 (474)
-+.+.++...++++....+-.+.+ +..+--||.+|-..|...-.....-+..++++
T Consensus 229 ~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDli 308 (1518)
T COG4889 229 QKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLI 308 (1518)
T ss_pred ccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEE
Confidence 667788877776653322111111 11245677888777766544444456788999
Q ss_pred EeccccccCC
Q 011963 335 VVDRLDSLSK 344 (474)
Q Consensus 335 ViDEad~ll~ 344 (474)
|.|||||-..
T Consensus 309 icDEAHRTtG 318 (1518)
T COG4889 309 ICDEAHRTTG 318 (1518)
T ss_pred Eecchhcccc
Confidence 9999999765
No 154
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.90 E-value=7.5e-05 Score=70.19 Aligned_cols=125 Identities=16% Similarity=0.092 Sum_probs=72.8
Q ss_pred chhhHHHHHHHhcCC--cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhccc
Q 011963 204 NSWGIEFWKCYSSAK--DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA 281 (474)
Q Consensus 204 ~~~Q~~~i~~~l~g~--dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~ 281 (474)
++-|..++..++... =+++++|.| ||||.+. -.+...+.. .+..+++++||...+..+.+.+
T Consensus 3 ~~~Q~~a~~~~l~~~~~~~~l~G~aG-tGKT~~l-~~~~~~~~~---------~g~~v~~~apT~~Aa~~L~~~~----- 66 (196)
T PF13604_consen 3 NEEQREAVRAILTSGDRVSVLQGPAG-TGKTTLL-KALAEALEA---------AGKRVIGLAPTNKAAKELREKT----- 66 (196)
T ss_dssp -HHHHHHHHHHHHCTCSEEEEEESTT-STHHHHH-HHHHHHHHH---------TT--EEEEESSHHHHHHHHHHH-----
T ss_pred CHHHHHHHHHHHhcCCeEEEEEECCC-CCHHHHH-HHHHHHHHh---------CCCeEEEECCcHHHHHHHHHhh-----
Confidence 345999999997654 467779999 9999643 334433333 3678999999999988876652
Q ss_pred CCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhCCC-CCc
Q 011963 282 FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KPH 360 (474)
Q Consensus 282 ~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~-~~q 360 (474)
++.+..++. .+.. ...--. .....+....+||||||-.+. ...+..++..++. ..+
T Consensus 67 -~~~a~Ti~~---------~l~~-~~~~~~-----------~~~~~~~~~~vliVDEasmv~-~~~~~~ll~~~~~~~~k 123 (196)
T PF13604_consen 67 -GIEAQTIHS---------FLYR-IPNGDD-----------EGRPELPKKDVLIVDEASMVD-SRQLARLLRLAKKSGAK 123 (196)
T ss_dssp -TS-EEEHHH---------HTTE-ECCEEC-----------CSSCC-TSTSEEEESSGGG-B-HHHHHHHHHHS-T-T-E
T ss_pred -CcchhhHHH---------HHhc-CCcccc-----------cccccCCcccEEEEecccccC-HHHHHHHHHHHHhcCCE
Confidence 233322211 0110 000000 000115556799999997655 7788888888875 677
Q ss_pred EEEEEcc
Q 011963 361 TVVFNDC 367 (474)
Q Consensus 361 ~llfSAT 367 (474)
++++--+
T Consensus 124 lilvGD~ 130 (196)
T PF13604_consen 124 LILVGDP 130 (196)
T ss_dssp EEEEE-T
T ss_pred EEEECCc
Confidence 7777554
No 155
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.79 E-value=0.00033 Score=76.44 Aligned_cols=140 Identities=14% Similarity=0.099 Sum_probs=87.8
Q ss_pred hhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccCC
Q 011963 205 SWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFG 283 (474)
Q Consensus 205 ~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~~ 283 (474)
+||..|+-.++..+-++++.+.| ||||... ..++..+...... . ..+++++.+||.-=|..+.+.+... ..++
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpG-TGKTt~v-~~ll~~l~~~~~~-~---~~~~I~l~APTGkAA~rL~e~~~~~~~~l~ 221 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPG-TGKTTTV-ARLLLALVKQSPK-Q---GKLRIALAAPTGKAAARLAESLRKAVKNLA 221 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCC-CCHHHHH-HHHHHHHHHhccc-c---CCCcEEEECCcHHHHHHHHHHHHhhhcccc
Confidence 68999999999999999999999 9999643 3333333332111 0 1357899999998888877766543 2211
Q ss_pred cEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHc------CCCCCCCcceEEeccccccCChhHHHHHHhhCCC
Q 011963 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL------KAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG 357 (474)
Q Consensus 284 i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~------~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~ 357 (474)
.. .. +.. ...+-..|-.||+..... ..-+.-.+++||||||- |++...|..|++.++.
T Consensus 222 ~~----------~~----~~~-~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS-Mvd~~l~~~ll~al~~ 285 (586)
T TIGR01447 222 AA----------EA----LIA-ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS-MVDLPLMAKLLKALPP 285 (586)
T ss_pred cc----------hh----hhh-ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc-cCCHHHHHHHHHhcCC
Confidence 10 00 000 111223344444332110 11123357899999995 5668889999999999
Q ss_pred CCcEEEEEc
Q 011963 358 KPHTVVFND 366 (474)
Q Consensus 358 ~~q~llfSA 366 (474)
..++|++--
T Consensus 286 ~~rlIlvGD 294 (586)
T TIGR01447 286 NTKLILLGD 294 (586)
T ss_pred CCEEEEECC
Confidence 999888743
No 156
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.78 E-value=0.00023 Score=81.86 Aligned_cols=141 Identities=11% Similarity=0.075 Sum_probs=94.2
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHH
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDH 297 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~ 297 (474)
+--+++=-|| ||||++-+- +...+... ...|.++||+-.++|-.|+.+.+..+...-.... ...+.++
T Consensus 274 ~~G~IWHtqG-SGKTlTm~~-~A~~l~~~-------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~ 341 (962)
T COG0610 274 KGGYIWHTQG-SGKTLTMFK-LARLLLEL-------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSE 341 (962)
T ss_pred CceEEEeecC-CchHHHHHH-HHHHHHhc-------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHH
Confidence 3578888899 999988643 33333333 2588999999999999999999999954322221 4455666
Q ss_pred HHHHHhcCCCcEEEEChHHHHHHHHcC-CCCCCCcc-eEEeccccccCChhHHHHHHhhCCCCCcEEEEEccCCcc
Q 011963 298 QITGLRSCEPEFLVSTPERLLKLVSLK-AIDVSGVS-LLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYT 371 (474)
Q Consensus 298 q~~~l~~~~~~IlV~TP~rL~~ll~~~-~~~l~~l~-~lViDEad~ll~~~~l~~Il~~l~~~~q~llfSAT~~~~ 371 (474)
..+.|..+.-.|+|+|-..+-..+... ...+.+-. .+|+|||||--. ..+...+...-++...++||.|.-..
T Consensus 342 Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~-G~~~~~~~~~~~~a~~~gFTGTPi~~ 416 (962)
T COG0610 342 LKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY-GELAKLLKKALKKAIFIGFTGTPIFK 416 (962)
T ss_pred HHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc-cHHHHHHHHHhccceEEEeeCCcccc
Confidence 666676533489999999888777553 12233333 577899998764 22222223333458899999996443
No 157
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.76 E-value=0.00092 Score=71.63 Aligned_cols=215 Identities=9% Similarity=0.014 Sum_probs=122.4
Q ss_pred hHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh-c-ccCCc
Q 011963 207 GIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-L-KAFGI 284 (474)
Q Consensus 207 Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~-l-~~~~i 284 (474)
+.+.+..+-..+=|++...|| ||||.-. -+.|+...-.. +| ..-+--|.|.-|.-+...+.. + ..+|-
T Consensus 361 R~~ll~~ir~n~vvvivgETG-SGKTTQl----~QyL~edGY~~----~G-mIGcTQPRRvAAiSVAkrVa~EM~~~lG~ 430 (1042)
T KOG0924|consen 361 RDQLLSVIRENQVVVIVGETG-SGKTTQL----AQYLYEDGYAD----NG-MIGCTQPRRVAAISVAKRVAEEMGVTLGD 430 (1042)
T ss_pred HHHHHHHHhhCcEEEEEecCC-CCchhhh----HHHHHhccccc----CC-eeeecCchHHHHHHHHHHHHHHhCCcccc
Confidence 334444444556688889999 9999632 23344432111 12 333445888888777754443 5 23344
Q ss_pred EEEEE--ecCCCHHHHHHHHhcCCCcEEEEChHHHHHH-HHcCCCCCCCcceEEeccccccCC-hhHHHHHHhhC---CC
Q 011963 285 HTVSL--HPGAAIDHQITGLRSCEPEFLVSTPERLLKL-VSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQSI---SG 357 (474)
Q Consensus 285 ~v~~~--~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~l-l~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~l---~~ 357 (474)
.|+.. +.+..- . .--|=+.|-|-|+.- |. .-+|..-+.+|+||||.=.- .+-+..|++.. ..
T Consensus 431 ~VGYsIRFEdvT~--------~-~T~IkymTDGiLLrEsL~--d~~L~kYSviImDEAHERslNtDilfGllk~~larRr 499 (1042)
T KOG0924|consen 431 TVGYSIRFEDVTS--------E-DTKIKYMTDGILLRESLK--DRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRR 499 (1042)
T ss_pred ccceEEEeeecCC--------C-ceeEEEeccchHHHHHhh--hhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhc
Confidence 33322 122111 1 345778999988752 32 23466778999999996543 44444555443 35
Q ss_pred CCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEE
Q 011963 358 KPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVL 437 (474)
Q Consensus 358 ~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~L 437 (474)
+..+|+.|||+.. ..|+.-|-+.|. ..+... +. .++..|...+ --.++-..+.+.+.-|.....+-+|
T Consensus 500 dlKliVtSATm~a--~kf~nfFgn~p~--f~IpGR---Ty-PV~~~~~k~p----~eDYVeaavkq~v~Ihl~~~~Gdil 567 (1042)
T KOG0924|consen 500 DLKLIVTSATMDA--QKFSNFFGNCPQ--FTIPGR---TY-PVEIMYTKTP----VEDYVEAAVKQAVQIHLSGPPGDIL 567 (1042)
T ss_pred cceEEEeeccccH--HHHHHHhCCCce--eeecCC---cc-ceEEEeccCc----hHHHHHHHHhhheEeeccCCCCCEE
Confidence 6789999999974 444444433564 344332 11 1333333333 2244556666666655533457899
Q ss_pred EEEccchhHHHHHHHHh
Q 011963 438 YIVGKDSKFQNLVSTLK 454 (474)
Q Consensus 438 VF~~s~~~a~~l~~~L~ 454 (474)
||..-.+..+-.+..++
T Consensus 568 IfmtGqediE~t~~~i~ 584 (1042)
T KOG0924|consen 568 IFMTGQEDIECTCDIIK 584 (1042)
T ss_pred EecCCCcchhHHHHHHH
Confidence 99988877666655554
No 158
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.75 E-value=0.0012 Score=70.63 Aligned_cols=217 Identities=9% Similarity=-0.006 Sum_probs=132.2
Q ss_pred hhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHH-HHHhc-ccCC
Q 011963 206 WGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS-VCKPL-KAFG 283 (474)
Q Consensus 206 ~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~-~~~~l-~~~~ 283 (474)
|-.+.+.++-...=+|+.+.|| ||||. .||-. |....... .+...=+--|.|--|.-|.. +.+.+ ..+|
T Consensus 269 ykdell~av~e~QVLiI~GeTG-SGKTT--QiPQy--L~EaGytk----~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG 339 (902)
T KOG0923|consen 269 YKDELLKAVKEHQVLIIVGETG-SGKTT--QIPQY--LYEAGYTK----GGKKIGCTQPRRVAAMSVAARVAEEMGVKLG 339 (902)
T ss_pred hHHHHHHHHHhCcEEEEEcCCC-CCccc--cccHH--HHhccccc----CCceEeecCcchHHHHHHHHHHHHHhCcccc
Confidence 3556677777778899999999 99985 34432 44432221 24445566788888777764 34445 2334
Q ss_pred cEEEE--EecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccC-C----hhHHHHHHhhCC
Q 011963 284 IHTVS--LHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLS-K----GDTLSLIRQSIS 356 (474)
Q Consensus 284 i~v~~--~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll-~----~~~l~~Il~~l~ 356 (474)
-.|+. -+.+...+ .--|=+.|-|.|+.=+. ...+|.+-+++||||||.=- . ...+..|.+.-
T Consensus 340 ~eVGYsIRFEdcTSe---------kTvlKYMTDGmLlREfL-~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~R- 408 (902)
T KOG0923|consen 340 HEVGYSIRFEDCTSE---------KTVLKYMTDGMLLREFL-SEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFR- 408 (902)
T ss_pred cccceEEEeccccCc---------ceeeeeecchhHHHHHh-ccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhC-
Confidence 33322 12221111 34577999999986432 45678889999999999532 2 55555555543
Q ss_pred CCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcE
Q 011963 357 GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKV 436 (474)
Q Consensus 357 ~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~ 436 (474)
++..+++.|||+.. ..| ..|+.+..+...-++. . .+.-+|-.++ +. .++-..+..++.-|.....+-+
T Consensus 409 pdLKllIsSAT~DA--ekF-S~fFDdapIF~iPGRR-y----PVdi~Yt~~P-EA---dYldAai~tVlqIH~tqp~GDI 476 (902)
T KOG0923|consen 409 PDLKLLISSATMDA--EKF-SAFFDDAPIFRIPGRR-Y----PVDIFYTKAP-EA---DYLDAAIVTVLQIHLTQPLGDI 476 (902)
T ss_pred CcceEEeeccccCH--HHH-HHhccCCcEEeccCcc-c----ceeeecccCC-ch---hHHHHHHhhheeeEeccCCccE
Confidence 57889999999875 344 4455554313333333 1 3555566665 33 3444556665555554446889
Q ss_pred EEEEccchhHHHHHHHHh
Q 011963 437 LYIVGKDSKFQNLVSTLK 454 (474)
Q Consensus 437 LVF~~s~~~a~~l~~~L~ 454 (474)
|||..-.++.+.....|.
T Consensus 477 LVFltGQeEIEt~~e~l~ 494 (902)
T KOG0923|consen 477 LVFLTGQEEIETVKENLK 494 (902)
T ss_pred EEEeccHHHHHHHHHHHH
Confidence 999998887777666664
No 159
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.74 E-value=0.0003 Score=77.01 Aligned_cols=139 Identities=13% Similarity=0.082 Sum_probs=87.8
Q ss_pred hhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccCC
Q 011963 205 SWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFG 283 (474)
Q Consensus 205 ~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~~ 283 (474)
+||..|+-..+..+-+++..+.| ||||..- .-++..+..... .....+++.+||..=|..+.+.+... ..++
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpG-TGKTt~v-~~ll~~l~~~~~-----~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~ 227 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPG-TGKTTTV-AKLLAALIQLAD-----GERCRIRLAAPTGKAAARLTESLGKALRQLP 227 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCC-CCHHHHH-HHHHHHHHHhcC-----CCCcEEEEECCcHHHHHHHHHHHHhhhhccc
Confidence 78999999999999999999999 9999543 223333333110 02457888899999998888776543 2222
Q ss_pred cEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHH------cCCCCCCCcceEEeccccccCChhHHHHHHhhCCC
Q 011963 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVS------LKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG 357 (474)
Q Consensus 284 i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~------~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~ 357 (474)
+.. . +.. ....-..|-.||+.... ...-+.-.+++||||||- |+|...|..+++.++.
T Consensus 228 ~~~----------~----~~~-~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS-Mvd~~lm~~ll~al~~ 291 (615)
T PRK10875 228 LTD----------E----QKK-RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS-MVDLPMMARLIDALPP 291 (615)
T ss_pred cch----------h----hhh-cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh-cccHHHHHHHHHhccc
Confidence 110 0 000 01112233333332211 111223346899999995 5568889999999999
Q ss_pred CCcEEEEEc
Q 011963 358 KPHTVVFND 366 (474)
Q Consensus 358 ~~q~llfSA 366 (474)
..++|++--
T Consensus 292 ~~rlIlvGD 300 (615)
T PRK10875 292 HARVIFLGD 300 (615)
T ss_pred CCEEEEecc
Confidence 999888743
No 160
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.70 E-value=0.00024 Score=66.99 Aligned_cols=137 Identities=10% Similarity=0.048 Sum_probs=72.5
Q ss_pred chhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccC
Q 011963 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF 282 (474)
Q Consensus 204 ~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~ 282 (474)
+..|..++.+++...-+++.+|.| ||||+..+..+++.+... ..-+.+|+-|+-+.. +.+--| ...
T Consensus 6 ~~~Q~~~~~al~~~~~v~~~G~AG-TGKT~LA~a~Al~~v~~g--------~~~kiii~Rp~v~~~----~~lGflpG~~ 72 (205)
T PF02562_consen 6 NEEQKFALDALLNNDLVIVNGPAG-TGKTFLALAAALELVKEG--------EYDKIIITRPPVEAG----EDLGFLPGDL 72 (205)
T ss_dssp SHHHHHHHHHHHH-SEEEEE--TT-SSTTHHHHHHHHHHHHTT--------S-SEEEEEE-S--TT--------SS----
T ss_pred CHHHHHHHHHHHhCCeEEEECCCC-CcHHHHHHHHHHHHHHhC--------CCcEEEEEecCCCCc----cccccCCCCH
Confidence 345999999999777888899999 999999888888877662 234677777765431 111001 000
Q ss_pred CcEE-----------EEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHH
Q 011963 283 GIHT-----------VSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLI 351 (474)
Q Consensus 283 ~i~v-----------~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~I 351 (474)
.-+. ..+++....+ .+.. .-.|-+..+..+ + +-.|++ .++|||||..+. ..++..|
T Consensus 73 ~eK~~p~~~p~~d~l~~~~~~~~~~----~~~~-~~~Ie~~~~~~i----R--Grt~~~-~~iIvDEaQN~t-~~~~k~i 139 (205)
T PF02562_consen 73 EEKMEPYLRPIYDALEELFGKEKLE----ELIQ-NGKIEIEPLAFI----R--GRTFDN-AFIIVDEAQNLT-PEELKMI 139 (205)
T ss_dssp -----TTTHHHHHHHTTTS-TTCHH----HHHH-TTSEEEEEGGGG----T--T--B-S-EEEEE-SGGG---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhChHhHH----HHhh-cCeEEEEehhhh----c--Cccccc-eEEEEecccCCC-HHHHHHH
Confidence 0000 0000111111 1222 234555554332 2 223333 799999999888 8999999
Q ss_pred HhhCCCCCcEEEEEc
Q 011963 352 RQSISGKPHTVVFND 366 (474)
Q Consensus 352 l~~l~~~~q~llfSA 366 (474)
+..+..+..++++--
T Consensus 140 lTR~g~~skii~~GD 154 (205)
T PF02562_consen 140 LTRIGEGSKIIITGD 154 (205)
T ss_dssp HTTB-TT-EEEEEE-
T ss_pred HcccCCCcEEEEecC
Confidence 999988888887643
No 161
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.60 E-value=0.014 Score=64.65 Aligned_cols=65 Identities=14% Similarity=-0.028 Sum_probs=50.9
Q ss_pred CchhhHHHHHHHhcC-CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh
Q 011963 203 VNSWGIEFWKCYSSA-KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (474)
Q Consensus 203 ~~~~Q~~~i~~~l~g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 278 (474)
.+++|..|+..++.. ..+++..|.| ||||.. +.-++..+.. .+.++|+++||..-|.++...+..
T Consensus 158 ln~~Q~~Av~~~l~~~~~~lI~GpPG-TGKT~t-~~~ii~~~~~---------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 158 LNESQKEAVSFALSSKDLFLIHGPPG-TGKTRT-LVELIRQLVK---------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCHHHHHHHHHHhcCCCeEEEEcCCC-CCHHHH-HHHHHHHHHH---------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 478899999999887 5788999999 999943 3444544444 356899999999998888877665
No 162
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.58 E-value=0.0009 Score=63.87 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=71.2
Q ss_pred chhhHHHHHHHhc---CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh-c
Q 011963 204 NSWGIEFWKCYSS---AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-L 279 (474)
Q Consensus 204 ~~~Q~~~i~~~l~---g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~-l 279 (474)
++-|.+....+.+ |.+.+.+.-+| .||| +-++|++..++.+. .-.+.+++| ++|..|.++.+.. |
T Consensus 25 R~~Q~~ia~~mi~~~~~~n~v~QlnMG-eGKT-sVI~Pmla~~LAdg--------~~LvrviVp-k~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 25 RPVQVEIAREMISPPSGKNSVMQLNMG-EGKT-SVIVPMLALALADG--------SRLVRVIVP-KALLEQMRQMLRSRL 93 (229)
T ss_pred eHHHHHHHHHHhCCCCCCCeEeeeccc-CCcc-chHHHHHHHHHcCC--------CcEEEEEcC-HHHHHHHHHHHHHHH
Confidence 3449999888876 57999999999 8999 66799998888753 335666677 5699999998877 5
Q ss_pred ccC-CcEEEEE--ecCCCHH----HHHH----HHhcCCCcEEEEChHHHHHH
Q 011963 280 KAF-GIHTVSL--HPGAAID----HQIT----GLRSCEPEFLVSTPERLLKL 320 (474)
Q Consensus 280 ~~~-~i~v~~~--~gg~~~~----~q~~----~l~~~~~~IlV~TP~rL~~l 320 (474)
++. +-++..+ .-.++.. ..+. .... .-.|+|+||+.++.+
T Consensus 94 g~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~-~~gill~~PEhilSf 144 (229)
T PF12340_consen 94 GGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMR-SGGILLATPEHILSF 144 (229)
T ss_pred HHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHH-cCCEEEeChHHHHHH
Confidence 544 5444443 3333321 1111 1122 235999999998764
No 163
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=97.49 E-value=0.012 Score=61.37 Aligned_cols=162 Identities=10% Similarity=0.029 Sum_probs=93.4
Q ss_pred ChhHHhhhHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhc-CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCC
Q 011963 175 PSKFLILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSS-AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFS 253 (474)
Q Consensus 175 p~~~~~~l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~-g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~ 253 (474)
++++...+++.+.++| .|+ |.+.+...+. |.-+++.-..| -|||+-.+ ++...+..
T Consensus 184 ~~~l~ev~d~kLvs~L--------lPF-----QreGv~faL~RgGR~llADeMG-LGKTiQAl--aIA~yyra------- 240 (689)
T KOG1000|consen 184 PSDLNEVMDPKLVSRL--------LPF-----QREGVIFALERGGRILLADEMG-LGKTIQAL--AIARYYRA------- 240 (689)
T ss_pred HHHHhhccCHHHHHhh--------Cch-----hhhhHHHHHhcCCeEEEecccc-cchHHHHH--HHHHHHhh-------
Confidence 3444443567776665 344 9999888765 56788888999 99997654 22223322
Q ss_pred CCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcce
Q 011963 254 FTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSL 333 (474)
Q Consensus 254 ~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~ 333 (474)
.+| .|||+|.--+ --..+.|..+-+.-..+..+.++.+.-.. +-. -+.|.|.+-+.|..+-. .+.-.....
T Consensus 241 -Ewp-lliVcPAsvr-ftWa~al~r~lps~~pi~vv~~~~D~~~~---~~t-~~~v~ivSye~ls~l~~--~l~~~~~~v 311 (689)
T KOG1000|consen 241 -EWP-LLIVCPASVR-FTWAKALNRFLPSIHPIFVVDKSSDPLPD---VCT-SNTVAIVSYEQLSLLHD--ILKKEKYRV 311 (689)
T ss_pred -cCc-EEEEecHHHh-HHHHHHHHHhcccccceEEEecccCCccc---ccc-CCeEEEEEHHHHHHHHH--HHhcccceE
Confidence 243 4788885332 23444555542221234455555432110 111 24688888776654322 122233678
Q ss_pred EEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccC
Q 011963 334 LVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCL 368 (474)
Q Consensus 334 lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~ 368 (474)
+|+||.|.|-+ -...+.++..+..-.++|++|.|.
T Consensus 312 vI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTP 348 (689)
T KOG1000|consen 312 VIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTP 348 (689)
T ss_pred EEEechhhhhccchhhhhhhhhHHHHhhheEEecCCc
Confidence 99999999987 333445555544455678888774
No 164
>PRK10536 hypothetical protein; Provisional
Probab=97.39 E-value=0.005 Score=59.97 Aligned_cols=135 Identities=9% Similarity=0.070 Sum_probs=77.1
Q ss_pred hhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHH-----------HHHHH
Q 011963 205 SWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK-----------AAKVR 273 (474)
Q Consensus 205 ~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreL-----------a~Qi~ 273 (474)
..|...+..+.+..-+++..|+| ||||+..+.-+++.+... .--+++|.=|+-+. ..-+.
T Consensus 62 ~~Q~~~l~al~~~~lV~i~G~aG-TGKT~La~a~a~~~l~~~--------~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~ 132 (262)
T PRK10536 62 EAQAHYLKAIESKQLIFATGEAG-CGKTWISAAKAAEALIHK--------DVDRIIVTRPVLQADEDLGFLPGDIAEKFA 132 (262)
T ss_pred HHHHHHHHHHhcCCeEEEECCCC-CCHHHHHHHHHHHHHhcC--------CeeEEEEeCCCCCchhhhCcCCCCHHHHHH
Confidence 33999999999888888999999 999988776666555442 12244444454321 11122
Q ss_pred HHHHhc-ccCCcEEEEEecCCCHHHHHHHH-hcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHH
Q 011963 274 SVCKPL-KAFGIHTVSLHPGAAIDHQITGL-RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLI 351 (474)
Q Consensus 274 ~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l-~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~I 351 (474)
-++..+ ..+.. +.|.. ....+ ....-.|-|... .+|+...++ -.+||||||+.+- ..++..+
T Consensus 133 p~~~pi~D~L~~----~~~~~----~~~~~~~~~~~~Iei~~l----~ymRGrtl~---~~~vIvDEaqn~~-~~~~k~~ 196 (262)
T PRK10536 133 PYFRPVYDVLVR----RLGAS----FMQYCLRPEIGKVEIAPF----AYMRGRTFE---NAVVILDEAQNVT-AAQMKMF 196 (262)
T ss_pred HHHHHHHHHHHH----HhChH----HHHHHHHhccCcEEEecH----HHhcCCccc---CCEEEEechhcCC-HHHHHHH
Confidence 222221 11100 01111 11211 110112444432 344444442 2799999999877 7889999
Q ss_pred HhhCCCCCcEEEE
Q 011963 352 RQSISGKPHTVVF 364 (474)
Q Consensus 352 l~~l~~~~q~llf 364 (474)
+..++.+.++|+.
T Consensus 197 ltR~g~~sk~v~~ 209 (262)
T PRK10536 197 LTRLGENVTVIVN 209 (262)
T ss_pred HhhcCCCCEEEEe
Confidence 9999888877765
No 165
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.38 E-value=0.00057 Score=73.41 Aligned_cols=161 Identities=11% Similarity=0.037 Sum_probs=92.7
Q ss_pred CchhhHHHHHHHhcC-----CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHH
Q 011963 203 VNSWGIEFWKCYSSA-----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK 277 (474)
Q Consensus 203 ~~~~Q~~~i~~~l~g-----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 277 (474)
+-++|..++..++-. .--|+.--.| -|||++.+--+++.=.......+.-...-.+|||||- .|..|.++++.
T Consensus 326 LmpHQkaal~Wl~wRE~q~~~GGILaddmG-LGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev~ 403 (901)
T KOG4439|consen 326 LMPHQKAALRWLLWRESQPPSGGILADDMG-LGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEVA 403 (901)
T ss_pred cchhhhhhhhhhcccccCCCCCcccccccc-cccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHHH
Confidence 346799988887543 3456666788 8999876555554433322111110111158999995 47788887776
Q ss_pred h-cccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHH----HHHc-CC-CCCCC--cceEEeccccccCC-hhH
Q 011963 278 P-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLK----LVSL-KA-IDVSG--VSLLVVDRLDSLSK-GDT 347 (474)
Q Consensus 278 ~-l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~----ll~~-~~-~~l~~--l~~lViDEad~ll~-~~~ 347 (474)
. +...-++|.++||.-..+-....|. .+||||+|-.-+.. -+.. +. --|-+ ...+|+||||.+-+ ..+
T Consensus 404 ~rl~~n~LsV~~~HG~n~r~i~~~~L~--~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq 481 (901)
T KOG4439|consen 404 RRLEQNALSVYLYHGPNKREISAKELR--KYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQ 481 (901)
T ss_pred HHHhhcceEEEEecCCccccCCHHHHh--hcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccchh
Confidence 5 5555789988888754333344555 48999999643322 0111 00 01222 35799999999988 322
Q ss_pred HHHHHhhCCCCCcEEEEEccC
Q 011963 348 LSLIRQSISGKPHTVVFNDCL 368 (474)
Q Consensus 348 l~~Il~~l~~~~q~llfSAT~ 368 (474)
-..-+..+.... ...+|+|.
T Consensus 482 ~S~AVC~L~a~~-RWclTGTP 501 (901)
T KOG4439|consen 482 CSKAVCKLSAKS-RWCLTGTP 501 (901)
T ss_pred HHHHHHHHhhcc-eeecccCc
Confidence 222222333222 34556664
No 166
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.35 E-value=0.00092 Score=68.61 Aligned_cols=104 Identities=18% Similarity=0.181 Sum_probs=65.6
Q ss_pred EEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH
Q 011963 220 ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI 299 (474)
Q Consensus 220 vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~ 299 (474)
++|....| ||||+..+ -++..+... ..+..++++++...|...++..+..-.. .
T Consensus 4 ~~I~G~aG-TGKTvla~-~l~~~l~~~-------~~~~~~~~l~~n~~l~~~l~~~l~~~~~---------~-------- 57 (352)
T PF09848_consen 4 ILITGGAG-TGKTVLAL-NLAKELQNS-------EEGKKVLYLCGNHPLRNKLREQLAKKYN---------P-------- 57 (352)
T ss_pred EEEEecCC-cCHHHHHH-HHHHHhhcc-------ccCCceEEEEecchHHHHHHHHHhhhcc---------c--------
Confidence 57778899 99997653 333333111 1467899999999999988887765420 0
Q ss_pred HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC----------hhHHHHHHhh
Q 011963 300 TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----------GDTLSLIRQS 354 (474)
Q Consensus 300 ~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~----------~~~l~~Il~~ 354 (474)
. .....+..|..+...+..........++|||||||+|.+ ..+|..|++.
T Consensus 58 ----~-~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 ----K-LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ----c-hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0 112333444444433332334456788999999999997 2566666665
No 167
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.34 E-value=0.00041 Score=78.15 Aligned_cols=121 Identities=8% Similarity=0.049 Sum_probs=86.6
Q ss_pred hHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccCCcE
Q 011963 207 GIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIH 285 (474)
Q Consensus 207 Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~~i~ 285 (474)
|.-.=-.+..| -|+-+.|| -||||+..||+.-..+. |-.+-||+..--||..=..++..+ ..+|+.
T Consensus 174 QliGgivLh~G--~IAEM~TG-EGKTLvAtlp~yLnAL~----------GkgVHvVTVNDYLA~RDaewmgply~fLGLs 240 (1112)
T PRK12901 174 QLIGGVVLHQG--KIAEMATG-EGKTLVATLPVYLNALT----------GNGVHVVTVNDYLAKRDSEWMGPLYEFHGLS 240 (1112)
T ss_pred HHhhhhhhcCC--ceeeecCC-CCchhHHHHHHHHHHHc----------CCCcEEEEechhhhhccHHHHHHHHHHhCCc
Confidence 55443334444 47899999 99999999999866554 557788899999998888888887 666999
Q ss_pred EEEEec-CCCHHHHHHHHhcCCCcEEEEChHHHH-HHHHc------CCCCCCCcceEEeccccccC
Q 011963 286 TVSLHP-GAAIDHQITGLRSCEPEFLVSTPERLL-KLVSL------KAIDVSGVSLLVVDRLDSLS 343 (474)
Q Consensus 286 v~~~~g-g~~~~~q~~~l~~~~~~IlV~TP~rL~-~ll~~------~~~~l~~l~~lViDEad~ll 343 (474)
|+++.. +.+.... +. .- .+||..+|..-|- |+|+. .......+.|-||||+|.+|
T Consensus 241 vg~i~~~~~~~~~r-r~-aY-~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 241 VDCIDKHQPNSEAR-RK-AY-NADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred eeecCCCCCCHHHH-HH-hC-CCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 999876 4444332 22 22 5899999986552 33322 12234668899999999876
No 168
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.33 E-value=0.0065 Score=69.78 Aligned_cols=118 Identities=13% Similarity=0.036 Sum_probs=74.1
Q ss_pred hHHHHHHHhcCCc-EEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcE
Q 011963 207 GIEFWKCYSSAKD-ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIH 285 (474)
Q Consensus 207 Q~~~i~~~l~g~d-vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~ 285 (474)
|.+|+..++.+++ +++..+.| ||||.. +-.+..+... .+..++.++||---|..+.. ..|+.
T Consensus 351 Qr~Av~~il~s~~v~vv~G~AG-TGKTT~--l~~~~~~~e~--------~G~~V~~~ApTGkAA~~L~e------~tGi~ 413 (988)
T PRK13889 351 QADALAHVTDGRDLGVVVGYAG-TGKSAM--LGVAREAWEA--------AGYEVRGAALSGIAAENLEG------GSGIA 413 (988)
T ss_pred HHHHHHHHhcCCCeEEEEeCCC-CCHHHH--HHHHHHHHHH--------cCCeEEEecCcHHHHHHHhh------ccCcc
Confidence 9999999999876 56778999 999964 3333333332 36789999999876654432 12332
Q ss_pred EEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhC-CCCCcEEEE
Q 011963 286 TVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI-SGKPHTVVF 364 (474)
Q Consensus 286 v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l-~~~~q~llf 364 (474)
..+ -.+|+.-...+...+....+||||||- |++...+..++... +...++|++
T Consensus 414 a~T-------------------------I~sll~~~~~~~~~l~~~~vlIVDEAS-Mv~~~~m~~LL~~a~~~garvVLV 467 (988)
T PRK13889 414 SRT-------------------------IASLEHGWGQGRDLLTSRDVLVIDEAG-MVGTRQLERVLSHAADAGAKVVLV 467 (988)
T ss_pred hhh-------------------------HHHHHhhhcccccccccCcEEEEECcc-cCCHHHHHHHHHhhhhCCCEEEEE
Confidence 211 111111111222345667899999997 55566777777755 567788887
Q ss_pred Ecc
Q 011963 365 NDC 367 (474)
Q Consensus 365 SAT 367 (474)
--+
T Consensus 468 GD~ 470 (988)
T PRK13889 468 GDP 470 (988)
T ss_pred CCH
Confidence 544
No 169
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.32 E-value=0.0014 Score=71.41 Aligned_cols=166 Identities=7% Similarity=-0.020 Sum_probs=102.9
Q ss_pred cCCCchhhHHHHHHHh----cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHH
Q 011963 200 PLFVNSWGIEFWKCYS----SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSV 275 (474)
Q Consensus 200 pi~~~~~Q~~~i~~~l----~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 275 (474)
.||.-+||.-.+.++. .+-+-|..-..| -||| |=++..+..|..... +|| -|||||+--|-+ +.++
T Consensus 397 ~i~LkdYQlvGvNWL~Llyk~~l~gILADEMG-LGKT-iQvIaFlayLkq~g~------~gp-HLVVvPsSTleN-WlrE 466 (941)
T KOG0389|consen 397 GIQLKDYQLVGVNWLLLLYKKKLNGILADEMG-LGKT-IQVIAFLAYLKQIGN------PGP-HLVVVPSSTLEN-WLRE 466 (941)
T ss_pred CCcccchhhhhHHHHHHHHHccccceehhhcc-Ccch-hHHHHHHHHHHHcCC------CCC-cEEEecchhHHH-HHHH
Confidence 3777888988877752 233668888999 9999 445666666665421 244 488999776633 3344
Q ss_pred HHhcccCCcEEEEEecCCCHHHHHHHH-hc--CCCcEEEEChHHHHHHH-HcCCCCCCCcceEEeccccccCC--hhHHH
Q 011963 276 CKPLKAFGIHTVSLHPGAAIDHQITGL-RS--CEPEFLVSTPERLLKLV-SLKAIDVSGVSLLVVDRLDSLSK--GDTLS 349 (474)
Q Consensus 276 ~~~l~~~~i~v~~~~gg~~~~~q~~~l-~~--~~~~IlV~TP~rL~~ll-~~~~~~l~~l~~lViDEad~ll~--~~~l~ 349 (474)
+.+|++ .++|-..||......+++.. .. .++||||+|-.-...-- .+..+.-.++.++|+||+|.|=+ -..+.
T Consensus 467 f~kwCP-sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~ 545 (941)
T KOG0389|consen 467 FAKWCP-SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYK 545 (941)
T ss_pred HHHhCC-ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHH
Confidence 444443 68999999998766665544 32 26899999964332100 00112234567999999998877 44555
Q ss_pred HHHhhCCCCCcEEEEEccC-CccHHHHHHH
Q 011963 350 LIRQSISGKPHTVVFNDCL-TYTSVPAVQN 378 (474)
Q Consensus 350 ~Il~~l~~~~q~llfSAT~-~~~v~~l~~~ 378 (474)
.++.. + ..+.++++.|. -+.+.+++..
T Consensus 546 ~LM~I-~-An~RlLLTGTPLQNNL~ELiSL 573 (941)
T KOG0389|consen 546 HLMSI-N-ANFRLLLTGTPLQNNLKELISL 573 (941)
T ss_pred Hhccc-c-ccceEEeeCCcccccHHHHHHH
Confidence 55443 3 34567777774 4446655554
No 170
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.27 E-value=0.0014 Score=71.97 Aligned_cols=143 Identities=13% Similarity=0.071 Sum_probs=79.8
Q ss_pred cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh----c-cc-C-CcEEEEEec
Q 011963 219 DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP----L-KA-F-GIHTVSLHP 291 (474)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~----l-~~-~-~i~v~~~~g 291 (474)
++=|.+.|| ||||.||+=.|++ |.+.- .-..-||+|||-+.-.=++..... + +. + +.+.-.++-
T Consensus 76 NiDI~METG-TGKTy~Ylrtmfe-Lhk~Y-------G~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~ 146 (985)
T COG3587 76 NIDILMETG-TGKTYTYLRTMFE-LHKKY-------GLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIY 146 (985)
T ss_pred eeeEEEecC-CCceeeHHHHHHH-HHHHh-------CceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEee
Confidence 777889999 9999999765553 33321 245779999998874333322222 1 11 1 233322222
Q ss_pred CCCHHHHHHHHhcCCCcEEEEChHHHHH------HHHcCCCCCC--------------C-cceEEeccccccCC-hhHHH
Q 011963 292 GAAIDHQITGLRSCEPEFLVSTPERLLK------LVSLKAIDVS--------------G-VSLLVVDRLDSLSK-GDTLS 349 (474)
Q Consensus 292 g~~~~~q~~~l~~~~~~IlV~TP~rL~~------ll~~~~~~l~--------------~-l~~lViDEad~ll~-~~~l~ 349 (474)
...... ...-.+++|.+|+.|-..... ++++...... . =-++||||-|+|.. -..+.
T Consensus 147 ~~~~~~-~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~~k~~~ 225 (985)
T COG3587 147 DEDIEK-FKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGDDKTYG 225 (985)
T ss_pred chHHHH-HhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccchHHHH
Confidence 211111 122233478888888654432 1221111111 1 13799999999997 45555
Q ss_pred HHHhhCCCCCcEEEEEccCCccHH
Q 011963 350 LIRQSISGKPHTVVFNDCLTYTSV 373 (474)
Q Consensus 350 ~Il~~l~~~~q~llfSAT~~~~v~ 373 (474)
.|....| .-++=|+||++....
T Consensus 226 ~i~~l~p--l~ilRfgATfkd~y~ 247 (985)
T COG3587 226 AIKQLNP--LLILRFGATFKDEYN 247 (985)
T ss_pred HHHhhCc--eEEEEecccchhhhc
Confidence 5554433 336779999998655
No 171
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.13 E-value=0.0027 Score=65.94 Aligned_cols=148 Identities=9% Similarity=0.024 Sum_probs=91.1
Q ss_pred chhhHHHHHHHhcCC-----cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh
Q 011963 204 NSWGIEFWKCYSSAK-----DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (474)
Q Consensus 204 ~~~Q~~~i~~~l~g~-----dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 278 (474)
.+||.+.+-.+.... .-|..-..| -|||.-.+.-++ ... .+..+|||+|+.+| .|..+++..
T Consensus 186 L~fQkE~l~Wl~~QE~Ss~~GGiLADEMG-MGKTIQtIaLll----ae~-------~ra~tLVvaP~VAl-mQW~nEI~~ 252 (791)
T KOG1002|consen 186 LPFQKEGLAWLTSQEESSVAGGILADEMG-MGKTIQTIALLL----AEV-------DRAPTLVVAPTVAL-MQWKNEIER 252 (791)
T ss_pred hhhhHHHHHHHHHhhhhhhccceehhhhc-cchHHHHHHHHH----hcc-------ccCCeeEEccHHHH-HHHHHHHHH
Confidence 456888877765443 345567899 999975543333 211 34458999999988 578888888
Q ss_pred cccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHc--CCC------C-----CCCc--ceEEeccccccC
Q 011963 279 LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL--KAI------D-----VSGV--SLLVVDRLDSLS 343 (474)
Q Consensus 279 l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~--~~~------~-----l~~l--~~lViDEad~ll 343 (474)
+.....++...+| ......+..|. ++|++.+|-.-+-...+. .++ + |.++ -.+|+||||.+-
T Consensus 253 ~T~gslkv~~YhG-~~R~~nikel~--~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK 329 (791)
T KOG1002|consen 253 HTSGSLKVYIYHG-AKRDKNIKELM--NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIK 329 (791)
T ss_pred hccCceEEEEEec-ccccCCHHHhh--cCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccc
Confidence 8554566655554 45455555665 589999998776554433 111 1 2333 468999999998
Q ss_pred C-hhHHHHHHhhCCCCCcEEEEEccC
Q 011963 344 K-GDTLSLIRQSISGKPHTVVFNDCL 368 (474)
Q Consensus 344 ~-~~~l~~Il~~l~~~~q~llfSAT~ 368 (474)
+ .....+-+-.+.. ...+.+|.|.
T Consensus 330 ~R~snTArAV~~L~t-t~rw~LSGTP 354 (791)
T KOG1002|consen 330 DRQSNTARAVFALET-TYRWCLSGTP 354 (791)
T ss_pred cccccHHHHHHhhHh-hhhhhccCCc
Confidence 8 2222222222221 2345667774
No 172
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.07 E-value=0.0059 Score=68.45 Aligned_cols=127 Identities=14% Similarity=0.084 Sum_probs=76.8
Q ss_pred chhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCC
Q 011963 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFG 283 (474)
Q Consensus 204 ~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~ 283 (474)
++.|..|+..+...+-+++..+.| ||||... -.++..+... + ....+++++||.--|..+.+.. |
T Consensus 325 ~~~Q~~Ai~~~~~~~~~iitGgpG-TGKTt~l-~~i~~~~~~~----~---~~~~v~l~ApTg~AA~~L~e~~------g 389 (720)
T TIGR01448 325 SEEQKQALDTAIQHKVVILTGGPG-TGKTTIT-RAIIELAEEL----G---GLLPVGLAAPTGRAAKRLGEVT------G 389 (720)
T ss_pred CHHHHHHHHHHHhCCeEEEECCCC-CCHHHHH-HHHHHHHHHc----C---CCceEEEEeCchHHHHHHHHhc------C
Confidence 455999999999999999999999 9999533 2233322221 0 1146788899988877554321 2
Q ss_pred cEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhCCCCCcEEE
Q 011963 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVV 363 (474)
Q Consensus 284 i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~ll 363 (474)
+...+++ +.|.. .++-. +.. .. -......+||||||+.+ +...+..++..++...++++
T Consensus 390 ~~a~Tih---------~lL~~-~~~~~---~~~---~~----~~~~~~~llIvDEaSMv-d~~~~~~Ll~~~~~~~rlil 448 (720)
T TIGR01448 390 LTASTIH---------RLLGY-GPDTF---RHN---HL----EDPIDCDLLIVDESSMM-DTWLALSLLAALPDHARLLL 448 (720)
T ss_pred CccccHH---------HHhhc-cCCcc---chh---hh----hccccCCEEEEeccccC-CHHHHHHHHHhCCCCCEEEE
Confidence 2211111 11111 11100 000 00 01234679999999865 57778888999998888888
Q ss_pred EEc
Q 011963 364 FND 366 (474)
Q Consensus 364 fSA 366 (474)
+--
T Consensus 449 vGD 451 (720)
T TIGR01448 449 VGD 451 (720)
T ss_pred ECc
Confidence 743
No 173
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.07 E-value=0.0023 Score=72.15 Aligned_cols=153 Identities=8% Similarity=0.019 Sum_probs=99.6
Q ss_pred CCchhhHHHHHHHh---cCC-cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHH
Q 011963 202 FVNSWGIEFWKCYS---SAK-DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK 277 (474)
Q Consensus 202 ~~~~~Q~~~i~~~l---~g~-dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 277 (474)
|++.||...+.++. ..+ |-|..-..| -|||.- .|.+|.++-.... +..--||||||--+. .+.-+|+
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmG-LGKTIQ-tISllAhLACeeg------nWGPHLIVVpTsviL-nWEMElK 685 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMG-LGKTIQ-TISLLAHLACEEG------NWGPHLIVVPTSVIL-NWEMELK 685 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhc-ccchhH-HHHHHHHHHhccc------CCCCceEEeechhhh-hhhHHHh
Confidence 56778888877763 222 778888999 999954 4667777766532 233448889987653 3556667
Q ss_pred hcccCCcEEEEEecCCCHHHHHH-HHhc-CCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC--hhHHHHHHh
Q 011963 278 PLKAFGIHTVSLHPGAAIDHQIT-GLRS-CEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GDTLSLIRQ 353 (474)
Q Consensus 278 ~l~~~~i~v~~~~gg~~~~~q~~-~l~~-~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~--~~~l~~Il~ 353 (474)
.++. |+++.+.||.....+..+ .+.+ .-++|.|++--.+..- ...|.-.+.+||||||||++-. ...+..++.
T Consensus 686 RwcP-glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd--~~AFkrkrWqyLvLDEaqnIKnfksqrWQAlln 762 (1958)
T KOG0391|consen 686 RWCP-GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQD--LTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLN 762 (1958)
T ss_pred hhCC-cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhH--HHHHHhhccceeehhhhhhhcchhHHHHHHHhc
Confidence 7654 899999998854332211 2221 1367888775444322 1445556789999999999988 666666765
Q ss_pred hCCCCCcEEEEEccC
Q 011963 354 SISGKPHTVVFNDCL 368 (474)
Q Consensus 354 ~l~~~~q~llfSAT~ 368 (474)
.-. .|.++++.|-
T Consensus 763 fns--qrRLLLtgTP 775 (1958)
T KOG0391|consen 763 FNS--QRRLLLTGTP 775 (1958)
T ss_pred cch--hheeeecCCc
Confidence 432 4566777763
No 174
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.07 E-value=0.0043 Score=61.47 Aligned_cols=152 Identities=13% Similarity=0.048 Sum_probs=96.1
Q ss_pred hHHHHHHHh----------cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHH
Q 011963 207 GIEFWKCYS----------SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (474)
Q Consensus 207 Q~~~i~~~l----------~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 276 (474)
|.+++-.+. .+.-.++--.|| -||--.-.--|+++++.. ..++|+|+.+-.|-....+-+
T Consensus 42 QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtG-vGKGR~iAgiI~~n~l~G---------r~r~vwvS~s~dL~~Da~RDl 111 (303)
T PF13872_consen 42 QLEAVIYACQRHEQILPGGSRAGFFLGDGTG-VGKGRQIAGIILENWLRG---------RKRAVWVSVSNDLKYDAERDL 111 (303)
T ss_pred HHHHHHHHHHHHHhhcccccCcEEEeccCCC-cCccchhHHHHHHHHHcC---------CCceEEEECChhhhhHHHHHH
Confidence 777765443 224677777888 788544333355555542 347999999999999999999
Q ss_pred HhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcC--------------CCCCCCcceEEecccccc
Q 011963 277 KPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK--------------AIDVSGVSLLVVDRLDSL 342 (474)
Q Consensus 277 ~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~--------------~~~l~~l~~lViDEad~l 342 (474)
+.+....+.+..+..- .... ...+ .-.||.+|--.|..--..+ .-+++. +||+||||.+
T Consensus 112 ~DIG~~~i~v~~l~~~-~~~~-~~~~---~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdg--vivfDEcH~a 184 (303)
T PF13872_consen 112 RDIGADNIPVHPLNKF-KYGD-IIRL---KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDG--VIVFDECHKA 184 (303)
T ss_pred HHhCCCcccceechhh-ccCc-CCCC---CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCc--eEEeccchhc
Confidence 9885445555444321 1000 0112 2358888877665543211 112333 8999999999
Q ss_pred CC-----------hhHHHHHHhhCCCCCcEEEEEccCCccHHHHH
Q 011963 343 SK-----------GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAV 376 (474)
Q Consensus 343 l~-----------~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~ 376 (474)
-. ...+..+...+| +.+++.+|||...++..++
T Consensus 185 kn~~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgasep~Nma 228 (303)
T PF13872_consen 185 KNLSSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASEPRNMA 228 (303)
T ss_pred CCCCccCccccHHHHHHHHHHHhCC-CCcEEEecccccCCCceee
Confidence 77 134555666666 4669999999988766553
No 175
>PF13245 AAA_19: Part of AAA domain
Probab=96.97 E-value=0.0033 Score=49.68 Aligned_cols=60 Identities=15% Similarity=0.125 Sum_probs=39.6
Q ss_pred HHHHHhcCCc-EEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHH
Q 011963 210 FWKCYSSAKD-ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (474)
Q Consensus 210 ~i~~~l~g~d-vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 276 (474)
+|...+++.. +++.+|.| ||||...+ .++..+...... .+-++||++||+..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pG-tGKT~~~~-~~i~~l~~~~~~-----~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPG-TGKTTTLA-ARIAELLAARAD-----PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCC-CCHHHHHH-HHHHHHHHHhcC-----CCCeEEEECCCHHHHHHHHHHH
Confidence 3443344555 44599999 99995543 344444431111 2558999999999999998887
No 176
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=96.95 E-value=0.0015 Score=72.75 Aligned_cols=149 Identities=12% Similarity=0.112 Sum_probs=90.7
Q ss_pred hhhHHHHHHHh---cCC-cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcc
Q 011963 205 SWGIEFWKCYS---SAK-DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK 280 (474)
Q Consensus 205 ~~Q~~~i~~~l---~g~-dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 280 (474)
+||...+.++. ++. +-|.+-.+| -|||..- +.++..++..+.. .||+ |||||+--|.. ...++..+.
T Consensus 397 ~YQl~GLqWmVSLyNNnLNGILADEMG-LGKTIQt-IsLitYLmE~K~~-----~GP~-LvivPlstL~N-W~~Ef~kWa 467 (1157)
T KOG0386|consen 397 EYQLHGLQWMVSLYNNNLNGILADEMG-LGKTIQT-ISLITYLMEHKQM-----QGPF-LIIVPLSTLVN-WSSEFPKWA 467 (1157)
T ss_pred hhhhhhhHHHhhccCCCcccccchhcc-cchHHHH-HHHHHHHHHHccc-----CCCe-EEeccccccCC-chhhccccc
Confidence 44888777763 333 667777999 9999764 6677777777654 4666 78899777754 333444442
Q ss_pred cCCcEEEEEecCCCHHH--HHHHHhcCCCcEEEEChHHHHHHHHcCCCCCC--CcceEEeccccccCC-hhHHHHHHhhC
Q 011963 281 AFGIHTVSLHPGAAIDH--QITGLRSCEPEFLVSTPERLLKLVSLKAIDVS--GVSLLVVDRLDSLSK-GDTLSLIRQSI 355 (474)
Q Consensus 281 ~~~i~v~~~~gg~~~~~--q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~--~l~~lViDEad~ll~-~~~l~~Il~~l 355 (474)
+ .+..+... |.+..+ ....+..+.++||++|-+.+.. .+ -.|+ +..++||||-|+|-. ...+...+...
T Consensus 468 P-Sv~~i~Yk-Gtp~~R~~l~~qir~gKFnVLlTtyEyiik---dk-~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~ 541 (1157)
T KOG0386|consen 468 P-SVQKIQYK-GTPQQRSGLTKQQRHGKFNVLLTTYEYIIK---DK-ALLSKISWKYMIIDEGHRMKNAICKLTDTLNTH 541 (1157)
T ss_pred c-ceeeeeee-CCHHHHhhHHHHHhcccceeeeeeHHHhcC---CH-HHHhccCCcceeecccccccchhhHHHHHhhcc
Confidence 2 34443333 433211 1222233579999999887754 11 1122 245899999999988 66666666532
Q ss_pred CCCCcEEEEEccC
Q 011963 356 SGKPHTVVFNDCL 368 (474)
Q Consensus 356 ~~~~q~llfSAT~ 368 (474)
-.....++++.|.
T Consensus 542 y~~q~RLLLTGTP 554 (1157)
T KOG0386|consen 542 YRAQRRLLLTGTP 554 (1157)
T ss_pred ccchhhhhhcCCh
Confidence 2233455666664
No 177
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.83 E-value=0.013 Score=66.69 Aligned_cols=173 Identities=10% Similarity=0.076 Sum_probs=109.3
Q ss_pred CCCccccC--CCchhhHHHHHHH--hcC--CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHH
Q 011963 194 GVEQDNPL--FVNSWGIEFWKCY--SSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQE 267 (474)
Q Consensus 194 g~~~ptpi--~~~~~Q~~~i~~~--l~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Ptre 267 (474)
.|.-|.|| +.+.||++.+..+ +.. -+-|.|--.| =||||--+--+......++. .....+..-.|||||. .
T Consensus 965 ~y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMG-LGKTLQticilAsd~y~r~s-~~~e~~~~PSLIVCPs-T 1041 (1549)
T KOG0392|consen 965 EYKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMG-LGKTLQTICILASDHYKRRS-ESSEFNRLPSLIVCPS-T 1041 (1549)
T ss_pred ccccccchhHHHHHHHHhccHHHHHHHHhcccceeecccc-ccHHHHHHHHHHHHHHhhcc-cchhhccCCeEEECCc-h
Confidence 46677775 5678899988775 332 3778899999 99998664444444444321 1112234447999994 5
Q ss_pred HHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHH---HHHHcCCCCCCCcceEEeccccccCC
Q 011963 268 KAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLL---KLVSLKAIDVSGVSLLVVDRLDSLSK 344 (474)
Q Consensus 268 La~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~---~ll~~~~~~l~~l~~lViDEad~ll~ 344 (474)
|+-.+..++.++.++ +++...+|+-..+...+.--+ +.+|+|++-+-+. +++... ...|.|+||-|-|-.
T Consensus 1042 LtGHW~~E~~kf~pf-L~v~~yvg~p~~r~~lR~q~~-~~~iiVtSYDv~RnD~d~l~~~-----~wNYcVLDEGHVikN 1114 (1549)
T KOG0392|consen 1042 LTGHWKSEVKKFFPF-LKVLQYVGPPAERRELRDQYK-NANIIVTSYDVVRNDVDYLIKI-----DWNYCVLDEGHVIKN 1114 (1549)
T ss_pred hhhHHHHHHHHhcch-hhhhhhcCChHHHHHHHhhcc-ccceEEeeHHHHHHHHHHHHhc-----ccceEEecCcceecc
Confidence 887788888887555 666666666443333222222 4699999987764 222222 235899999999988
Q ss_pred -hhHHHHHHhhCCCCCcEEEEEcc-CCccHHHHHH
Q 011963 345 -GDTLSLIRQSISGKPHTVVFNDC-LTYTSVPAVQ 377 (474)
Q Consensus 345 -~~~l~~Il~~l~~~~q~llfSAT-~~~~v~~l~~ 377 (474)
...+....+.+..+.+. ++|.| +-+.|.++-.
T Consensus 1115 ~ktkl~kavkqL~a~hRL-ILSGTPIQNnvleLWS 1148 (1549)
T KOG0392|consen 1115 SKTKLTKAVKQLRANHRL-ILSGTPIQNNVLELWS 1148 (1549)
T ss_pred hHHHHHHHHHHHhhcceE-EeeCCCcccCHHHHHH
Confidence 66666677776655554 45666 4444555433
No 178
>PRK04296 thymidine kinase; Provisional
Probab=96.63 E-value=0.011 Score=55.09 Aligned_cols=110 Identities=12% Similarity=0.122 Sum_probs=58.7
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEecc---HHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS---QEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Pt---reLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
.=+++..|.| +|||.+. +-++.++.. .+.+++|+-|. |+...++ +..+|+...
T Consensus 3 ~i~litG~~G-sGKTT~~-l~~~~~~~~---------~g~~v~i~k~~~d~~~~~~~i------~~~lg~~~~------- 58 (190)
T PRK04296 3 KLEFIYGAMN-SGKSTEL-LQRAYNYEE---------RGMKVLVFKPAIDDRYGEGKV------VSRIGLSRE------- 58 (190)
T ss_pred EEEEEECCCC-CHHHHHH-HHHHHHHHH---------cCCeEEEEeccccccccCCcE------ecCCCCccc-------
Confidence 3367888999 9999543 444444433 35578888662 3221111 111222111
Q ss_pred HHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhCCCCCcEEEEEccC
Q 011963 295 IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCL 368 (474)
Q Consensus 295 ~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~llfSAT~ 368 (474)
.+.+..+..+++.+.. .-....+||||||+.+ +.+++..+++.+...-..+++++--
T Consensus 59 -------------~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l-~~~~v~~l~~~l~~~g~~vi~tgl~ 115 (190)
T PRK04296 59 -------------AIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFL-DKEQVVQLAEVLDDLGIPVICYGLD 115 (190)
T ss_pred -------------ceEeCChHHHHHHHHh---hCCCCCEEEEEccccC-CHHHHHHHHHHHHHcCCeEEEEecC
Confidence 1223445556555544 2346789999999765 3444666666644333445554443
No 179
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.62 E-value=0.0075 Score=64.51 Aligned_cols=145 Identities=11% Similarity=0.125 Sum_probs=85.5
Q ss_pred hhhHHHHHHHh-----cC----CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHH
Q 011963 205 SWGIEFWKCYS-----SA----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSV 275 (474)
Q Consensus 205 ~~Q~~~i~~~l-----~g----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 275 (474)
|||.-.+-.++ .| +.+++.-|-| .|||..-..-++..+.... ..+..+++.+++++.|..+++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~Rk-NGKS~l~a~i~ly~l~~~g------~~~~~i~~~A~~~~QA~~~f~~ 73 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRK-NGKSTLAAAIALYMLFLDG------EPGAEIYCAANTRDQAKIVFDE 73 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCc-cCccHHHHHHHHHHHhcCC------ccCceEEEEeCCHHHHHHHHHH
Confidence 67888877776 23 3688888999 9999766555554444331 1477999999999999999999
Q ss_pred HHhc-ccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHc--CCCCCCCcceEEeccccccCChhHHHHH
Q 011963 276 CKPL-KAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL--KAIDVSGVSLLVVDRLDSLSKGDTLSLI 351 (474)
Q Consensus 276 ~~~l-~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~--~~~~l~~l~~lViDEad~ll~~~~l~~I 351 (474)
+..+ ... .+... .+. ...... .-.|.....+.++..+.. ...+=.+..++|+||+|.+-+.+.+..|
T Consensus 74 ~~~~i~~~~~l~~~--~~~-----~~~~~~--~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l 144 (477)
T PF03354_consen 74 AKKMIEASPELRKR--KKP-----KIIKSN--KKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDAL 144 (477)
T ss_pred HHHHHHhChhhccc--hhh-----hhhhhh--ceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHH
Confidence 9887 221 11110 000 000000 112222222222222222 2233345789999999999875566666
Q ss_pred HhhCC--CCCcEEEEE
Q 011963 352 RQSIS--GKPHTVVFN 365 (474)
Q Consensus 352 l~~l~--~~~q~llfS 365 (474)
...+. .+++++..|
T Consensus 145 ~~g~~~r~~pl~~~IS 160 (477)
T PF03354_consen 145 ESGMGARPNPLIIIIS 160 (477)
T ss_pred HhhhccCCCceEEEEe
Confidence 65554 456666654
No 180
>PHA02533 17 large terminase protein; Provisional
Probab=96.56 E-value=0.02 Score=61.90 Aligned_cols=149 Identities=9% Similarity=-0.011 Sum_probs=88.2
Q ss_pred ccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh
Q 011963 199 NPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (474)
Q Consensus 199 tpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 278 (474)
-|+..++||...+..+..+|-.++..+-. .|||.+..+-++...... .+..+++++|+++.|..+++.++.
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq-~GKStl~a~~al~~a~~~--------~~~~v~i~A~~~~QA~~vF~~ik~ 126 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQ-LGKTTVVAIFLLHYVCFN--------KDKNVGILAHKASMAAEVLDRTKQ 126 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCc-CChHHHHHHHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 35667899999998886677556666667 799988765555444332 356999999999999999988876
Q ss_pred c-ccC-C-cEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-hhHHHHHHhh
Q 011963 279 L-KAF-G-IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQS 354 (474)
Q Consensus 279 l-~~~-~-i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~ 354 (474)
+ ... . ++....... ...-.+.+ |..|.+.|-+ .....=.+..++||||+|.+-+ .+.+..+...
T Consensus 127 ~ie~~P~l~~~~i~~~~----~~~I~l~N-GS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~~~e~~~ai~p~ 194 (534)
T PHA02533 127 AIELLPDFLQPGIVEWN----KGSIELEN-GSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPNFIDFWLAIQPV 194 (534)
T ss_pred HHHhCHHHhhcceeecC----ccEEEeCC-CCEEEEEeCC-------CCccCCCCCceEEEeccccCCCHHHHHHHHHHH
Confidence 5 222 1 111100000 00111233 4555444421 1112223467899999998877 3444444444
Q ss_pred CCC--CCcEEEEEccC
Q 011963 355 ISG--KPHTVVFNDCL 368 (474)
Q Consensus 355 l~~--~~q~llfSAT~ 368 (474)
+.. ..+++++|...
T Consensus 195 lasg~~~r~iiiSTp~ 210 (534)
T PHA02533 195 ISSGRSSKIIITSTPN 210 (534)
T ss_pred HHcCCCceEEEEECCC
Confidence 432 24566666664
No 181
>PRK14974 cell division protein FtsY; Provisional
Probab=96.54 E-value=0.049 Score=55.49 Aligned_cols=129 Identities=11% Similarity=0.053 Sum_probs=73.7
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEecc---HHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS---QEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Pt---reLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
.=++++.|+| +|||.+-.--+ ..+.. .+..++++... ..-..|+......+ |+.+.....|..
T Consensus 141 ~vi~~~G~~G-vGKTTtiakLA-~~l~~---------~g~~V~li~~Dt~R~~a~eqL~~~a~~l---gv~v~~~~~g~d 206 (336)
T PRK14974 141 VVIVFVGVNG-TGKTTTIAKLA-YYLKK---------NGFSVVIAAGDTFRAGAIEQLEEHAERL---GVKVIKHKYGAD 206 (336)
T ss_pred eEEEEEcCCC-CCHHHHHHHHH-HHHHH---------cCCeEEEecCCcCcHHHHHHHHHHHHHc---CCceecccCCCC
Confidence 3577789999 99996543222 22322 24455555432 33445555555544 554433222222
Q ss_pred HHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC----hhHHHHHHhhCCCCCcEEEEEccCCc
Q 011963 295 IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 295 ~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~llfSAT~~~ 370 (474)
..... ...+++... .+.++++||.|.++-. ..+|..|.+.+.++.-+++++||...
T Consensus 207 p~~v~---------------~~ai~~~~~-----~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 207 PAAVA---------------YDAIEHAKA-----RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred HHHHH---------------HHHHHHHHh-----CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch
Confidence 11100 001111111 2356899999999864 66777777777777778999999888
Q ss_pred cHHHHHHHhh
Q 011963 371 TSVPAVQNLL 380 (474)
Q Consensus 371 ~v~~l~~~~l 380 (474)
+....++.|.
T Consensus 267 d~~~~a~~f~ 276 (336)
T PRK14974 267 DAVEQAREFN 276 (336)
T ss_pred hHHHHHHHHH
Confidence 7666676664
No 182
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=96.48 E-value=0.0096 Score=66.10 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 411 EEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 411 ~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
..++..|...|..++.. +.++||||+|+..|+.|+..|...|+++. .+|..++..|++
T Consensus 429 ~~q~~~L~~~L~~~~~~-----g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~ 494 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAK-----GERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL 494 (652)
T ss_pred cccHHHHHHHHHHHHhC-----CCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc
Confidence 34566666777766554 56999999999999999999999999774 567788889874
No 183
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.45 E-value=0.018 Score=63.80 Aligned_cols=73 Identities=15% Similarity=0.057 Sum_probs=48.0
Q ss_pred hHHHHHHHhc----CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhh----------h-------cC-----------CC-
Q 011963 207 GIEFWKCYSS----AKDILETSGSSSTIVQIAWIVATAADSIARKE----------K-------EG-----------FS- 253 (474)
Q Consensus 207 Q~~~i~~~l~----g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~----------~-------~~-----------~~- 253 (474)
|...+..+++ +.+.++-+||| |||||+.+=..|.+....+. . .. ..
T Consensus 26 Q~a~M~rvl~~L~~~q~~llESPTG-TGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~~e~~ 104 (945)
T KOG1132|consen 26 QLAFMTRVLSCLDRKQNGLLESPTG-TGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEAGEPI 104 (945)
T ss_pred HHHHHHHHHHHHHHhhhhhccCCCC-CCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhhcCcc
Confidence 8777666554 46899999999 99999988777766554331 0 00 00
Q ss_pred ---CCCcEEEEEeccHHHHHHHHHHHHhcc
Q 011963 254 ---FTGPFLLFLVSSQEKAAKVRSVCKPLK 280 (474)
Q Consensus 254 ---~~~~~alil~PtreLa~Qi~~~~~~l~ 280 (474)
-.-|...|-+-|..-..|+-++++...
T Consensus 105 ~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 105 ACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred ccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 014566666777777777777776653
No 184
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.43 E-value=0.21 Score=56.37 Aligned_cols=76 Identities=17% Similarity=0.097 Sum_probs=51.9
Q ss_pred hhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-cc-C-
Q 011963 206 WGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KA-F- 282 (474)
Q Consensus 206 ~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~-~- 282 (474)
-|.+++.+ ....++|.|+.| ||||.+..-=+.. ++.... ..+-+.|+|+-|+.-|..+...+..+ .. .
T Consensus 8 ~Q~~av~~--~~g~~lV~AgaG-SGKT~~l~~ria~-Li~~~~-----i~P~~IL~lTFT~kAA~em~~Rl~~~~~~~~~ 78 (726)
T TIGR01073 8 EQREAVKT--TEGPLLIMAGAG-SGKTRVLTHRIAH-LIAEKN-----VAPWNILAITFTNKAAREMKERVEKLLGPVAE 78 (726)
T ss_pred HHHHHHhC--CCCCEEEEeCCC-CCHHHHHHHHHHH-HHHcCC-----CCHHHeeeeeccHHHHHHHHHHHHHHhccccC
Confidence 39999864 356899999999 9999775544443 333211 12347899999999999998888776 21 2
Q ss_pred CcEEEEEe
Q 011963 283 GIHTVSLH 290 (474)
Q Consensus 283 ~i~v~~~~ 290 (474)
++.+.+++
T Consensus 79 ~~~i~TFH 86 (726)
T TIGR01073 79 DIWISTFH 86 (726)
T ss_pred CcEEEcHH
Confidence 45555544
No 185
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.43 E-value=0.006 Score=60.59 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=48.8
Q ss_pred hHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 207 GIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 207 Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
|.++|.. ....++|.|+.| ||||.+.+--++..+.... ....+.|+|++|+..|..+...+..+
T Consensus 5 Q~~~i~~--~~~~~lV~a~AG-SGKT~~l~~ri~~ll~~~~------~~~~~Il~lTft~~aa~e~~~ri~~~ 68 (315)
T PF00580_consen 5 QRRIIRS--TEGPLLVNAGAG-SGKTTTLLERIAYLLYEGG------VPPERILVLTFTNAAAQEMRERIREL 68 (315)
T ss_dssp HHHHHHS---SSEEEEEE-TT-SSHHHHHHHHHHHHHHTSS------STGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHhC--CCCCEEEEeCCC-CCchHHHHHHHHHhhcccc------CChHHheecccCHHHHHHHHHHHHHh
Confidence 8888877 788999999999 9999877655554444332 13557999999999999999888885
No 186
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.40 E-value=0.024 Score=48.75 Aligned_cols=19 Identities=5% Similarity=-0.074 Sum_probs=12.1
Q ss_pred cCCcEEEEcCCCcchhHHHH
Q 011963 216 SAKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf 235 (474)
.++-+++.+|+| +|||...
T Consensus 3 ~~~~~~i~G~~G-~GKT~~~ 21 (131)
T PF13401_consen 3 SQRILVISGPPG-SGKTTLI 21 (131)
T ss_dssp ----EEEEE-TT-SSHHHHH
T ss_pred CCcccEEEcCCC-CCHHHHH
Confidence 345789999999 9999643
No 187
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.39 E-value=0.051 Score=61.32 Aligned_cols=120 Identities=13% Similarity=0.067 Sum_probs=73.6
Q ss_pred CchhhHHHHHHHhcC-CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhccc
Q 011963 203 VNSWGIEFWKCYSSA-KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA 281 (474)
Q Consensus 203 ~~~~Q~~~i~~~l~g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~ 281 (474)
.++.|..|+..++.+ +=++++.+.| +|||.. +-.+..+... .+..+++++||---|..+...
T Consensus 353 Ls~~Q~~Av~~i~~s~~~~il~G~aG-TGKTtl--l~~i~~~~~~--------~g~~V~~~ApTg~Aa~~L~~~------ 415 (744)
T TIGR02768 353 LSEEQYEAVRHVTGSGDIAVVVGRAG-TGKSTM--LKAAREAWEA--------AGYRVIGAALSGKAAEGLQAE------ 415 (744)
T ss_pred CCHHHHHHHHHHhcCCCEEEEEecCC-CCHHHH--HHHHHHHHHh--------CCCeEEEEeCcHHHHHHHHhc------
Confidence 345599999999885 5568889999 999854 3333333332 366889999997766655431
Q ss_pred CCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhC-CCCCc
Q 011963 282 FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI-SGKPH 360 (474)
Q Consensus 282 ~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l-~~~~q 360 (474)
.|+...++. +++.-+......+...++||||||-.+ +...+..++... ....+
T Consensus 416 ~g~~a~Ti~-------------------------~~~~~~~~~~~~~~~~~llIvDEasMv-~~~~~~~Ll~~~~~~~~k 469 (744)
T TIGR02768 416 SGIESRTLA-------------------------SLEYAWANGRDLLSDKDVLVIDEAGMV-GSRQMARVLKEAEEAGAK 469 (744)
T ss_pred cCCceeeHH-------------------------HHHhhhccCcccCCCCcEEEEECcccC-CHHHHHHHHHHHHhcCCE
Confidence 244332221 111111122233567889999999655 455566677643 35677
Q ss_pred EEEEE
Q 011963 361 TVVFN 365 (474)
Q Consensus 361 ~llfS 365 (474)
+|++-
T Consensus 470 liLVG 474 (744)
T TIGR02768 470 VVLVG 474 (744)
T ss_pred EEEEC
Confidence 77764
No 188
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.32 E-value=0.049 Score=46.76 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=18.7
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhC
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSI 355 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l 355 (474)
....+|||||+|.+.. ...+..++..+
T Consensus 83 ~~~~~lilDe~~~~~~~~~~~~~~~i~~~ 111 (151)
T cd00009 83 AKPGVLFIDEIDSLSRGAQNALLRVLETL 111 (151)
T ss_pred CCCeEEEEeChhhhhHHHHHHHHHHHHhc
Confidence 3457899999999844 55555555555
No 189
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.28 E-value=0.014 Score=60.16 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=42.5
Q ss_pred CchhhHHHHHHH------hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHH
Q 011963 203 VNSWGIEFWKCY------SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (474)
Q Consensus 203 ~~~~Q~~~i~~~------l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi 272 (474)
.|.-|+.++..+ ..+..+++..|-| +|||+ ++-.|...... .+..+++++||.-=|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~G-tGKs~--l~~~i~~~~~~--------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAG-TGKSF--LIKAIIDYLRS--------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCC-CChhH--HHHHHHHHhcc--------ccceEEEecchHHHHHhc
Confidence 345599998888 7788999999999 99975 34444443332 356889999987766655
No 190
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.24 E-value=0.14 Score=52.81 Aligned_cols=21 Identities=0% Similarity=-0.295 Sum_probs=16.9
Q ss_pred cCCcEEEEcCCCcchhHHHHHH
Q 011963 216 SAKDILETSGSSSTIVQIAWIV 237 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~l 237 (474)
.|..++++.||| +|||....-
T Consensus 136 ~g~ii~lvGptG-vGKTTtiak 156 (374)
T PRK14722 136 RGGVFALMGPTG-VGKTTTTAK 156 (374)
T ss_pred CCcEEEEECCCC-CCHHHHHHH
Confidence 467899999999 999976543
No 191
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.24 E-value=0.035 Score=56.26 Aligned_cols=134 Identities=15% Similarity=0.054 Sum_probs=77.8
Q ss_pred chhhHHHHHHHhcCC-c-EEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhccc
Q 011963 204 NSWGIEFWKCYSSAK-D-ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA 281 (474)
Q Consensus 204 ~~~Q~~~i~~~l~g~-d-vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~ 281 (474)
|..|.-|+..++... + |....+.| ||||+-.+...++..+..+ ..-+.||-=|+..+
T Consensus 230 n~eQ~~ALdlLld~dI~lV~L~G~AG-tGKTlLALaAgleqv~e~~-------~y~KiiVtRp~vpv------------- 288 (436)
T COG1875 230 NAEQRVALDLLLDDDIDLVSLGGKAG-TGKTLLALAAGLEQVLERK-------RYRKIIVTRPTVPV------------- 288 (436)
T ss_pred cHHHHHHHHHhcCCCCCeEEeeccCC-ccHhHHHHHHHHHHHHHHh-------hhceEEEecCCcCc-------------
Confidence 345999999999875 4 44456777 9999998888888887754 23344555554333
Q ss_pred CCcEEEEEecCCC-----HH----HHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCC----------cceEEecccccc
Q 011963 282 FGIHTVSLHPGAA-----ID----HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSG----------VSLLVVDRLDSL 342 (474)
Q Consensus 282 ~~i~v~~~~gg~~-----~~----~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~----------l~~lViDEad~l 342 (474)
|-.++.+-|... |. .-.+.|.+ .==++-+.|...+..+.+.+.. =.|+|||||..+
T Consensus 289 -G~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~----~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL 363 (436)
T COG1875 289 -GEDIGFLPGTEEEKMGPWMQAIFDNLEVLFS----PNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL 363 (436)
T ss_pred -ccccCcCCCchhhhccchHHHHHhHHHHHhc----ccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc
Confidence 222222222211 00 01111111 0001123333344443333221 259999999988
Q ss_pred CChhHHHHHHhhCCCCCcEEEE
Q 011963 343 SKGDTLSLIRQSISGKPHTVVF 364 (474)
Q Consensus 343 l~~~~l~~Il~~l~~~~q~llf 364 (474)
- ..+|..|+..+.....+++.
T Consensus 364 T-pheikTiltR~G~GsKIVl~ 384 (436)
T COG1875 364 T-PHELKTILTRAGEGSKIVLT 384 (436)
T ss_pred C-HHHHHHHHHhccCCCEEEEc
Confidence 7 89999999999887777764
No 192
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.23 E-value=0.023 Score=60.74 Aligned_cols=63 Identities=11% Similarity=-0.002 Sum_probs=48.5
Q ss_pred CchhhHHHHHHHhcCCc-EEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHH
Q 011963 203 VNSWGIEFWKCYSSAKD-ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (474)
Q Consensus 203 ~~~~Q~~~i~~~l~g~d-vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 276 (474)
.++-|..|+...++.++ .++..|.| ||||..... +++.+... +-++||.+||.+=+..|.+.+
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPG-TGKT~TlvE-iI~qlvk~---------~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPG-TGKTRTLVE-IISQLVKQ---------KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCC-CCceeeHHH-HHHHHHHc---------CCeEEEEcCchHHHHHHHHHh
Confidence 34559999999999875 56678999 999987654 44455542 569999999999988887753
No 193
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.21 E-value=0.27 Score=51.08 Aligned_cols=51 Identities=8% Similarity=0.118 Sum_probs=34.5
Q ss_pred CCcceEEeccccccCC----hhHHHHHHhhCCCC-CcEEEEEccCCcc-HHHHHHHh
Q 011963 329 SGVSLLVVDRLDSLSK----GDTLSLIRQSISGK-PHTVVFNDCLTYT-SVPAVQNL 379 (474)
Q Consensus 329 ~~l~~lViDEad~ll~----~~~l~~Il~~l~~~-~q~llfSAT~~~~-v~~l~~~~ 379 (474)
.+.++++||++.++.. ...+..++..+... --.+++|||.... +.+....|
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~ 309 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQF 309 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHh
Confidence 5578999999999875 34556666655433 3568899998754 44444555
No 194
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=96.18 E-value=0.022 Score=61.69 Aligned_cols=147 Identities=5% Similarity=0.105 Sum_probs=95.3
Q ss_pred hhHHHHHHH----hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhccc
Q 011963 206 WGIEFWKCY----SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA 281 (474)
Q Consensus 206 ~Q~~~i~~~----l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~ 281 (474)
||...+..+ -+|-+-|..-..| -|||.- .+.++.+|....+- .||+ |||+|.--| +.+...++.
T Consensus 571 YQlkGLnWLvnlYdqGiNGILADeMG-LGKTVQ-sisvlAhLaE~~nI-----wGPF-LVVtpaStL----~NWaqEisr 638 (1185)
T KOG0388|consen 571 YQLKGLNWLVNLYDQGINGILADEMG-LGKTVQ-SISVLAHLAETHNI-----WGPF-LVVTPASTL----HNWAQEISR 638 (1185)
T ss_pred HhhccHHHHHHHHHccccceehhhhc-cchhHH-HHHHHHHHHHhccC-----CCce-EEeehHHHH----hHHHHHHHH
Confidence 366555444 4577889999999 999954 47788888775433 4665 778885555 445555533
Q ss_pred C--CcEEEEEecCCCHHHHHHHH--------hcCCCcEEEEChHHHHH---HHHcCCCCCCCcceEEeccccccCC--hh
Q 011963 282 F--GIHTVSLHPGAAIDHQITGL--------RSCEPEFLVSTPERLLK---LVSLKAIDVSGVSLLVVDRLDSLSK--GD 346 (474)
Q Consensus 282 ~--~i~v~~~~gg~~~~~q~~~l--------~~~~~~IlV~TP~rL~~---ll~~~~~~l~~l~~lViDEad~ll~--~~ 346 (474)
+ .+++.-..|+.......+.. +..+++|+|+|-.-++- +++. -..+|+|+|||..+-. ..
T Consensus 639 FlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk-----vKWQYMILDEAQAIKSSsS~ 713 (1185)
T KOG0388|consen 639 FLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK-----VKWQYMILDEAQAIKSSSSS 713 (1185)
T ss_pred hCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHh-----hhhhheehhHHHHhhhhhhh
Confidence 2 68888888887766554442 23378999988654431 2221 1256899999998876 55
Q ss_pred HHHHHHhhCCCCCcEEEEEccCCcc
Q 011963 347 TLSLIRQSISGKPHTVVFNDCLTYT 371 (474)
Q Consensus 347 ~l~~Il~~l~~~~q~llfSAT~~~~ 371 (474)
....++.. +.+-.++++.|.-..
T Consensus 714 RWKtLLsF--~cRNRLLLTGTPIQN 736 (1185)
T KOG0388|consen 714 RWKTLLSF--KCRNRLLLTGTPIQN 736 (1185)
T ss_pred HHHHHhhh--hccceeeecCCccch
Confidence 55556553 234467888885443
No 195
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=96.16 E-value=0.018 Score=64.09 Aligned_cols=122 Identities=11% Similarity=0.115 Sum_probs=89.7
Q ss_pred HHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccCCcEE
Q 011963 208 IEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHT 286 (474)
Q Consensus 208 ~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~~i~v 286 (474)
.|.+-.+.....-++-+.|| -||||+..+|+.-..+. |-.+.++...--||.--..++..+ ..+|+++
T Consensus 84 VQliG~i~lh~g~iaEM~TG-EGKTL~atlp~ylnaL~----------gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsv 152 (822)
T COG0653 84 VQLLGGIVLHLGDIAEMRTG-EGKTLVATLPAYLNALA----------GKGVHVVTVNDYLARRDAEWMGPLYEFLGLSV 152 (822)
T ss_pred HHHhhhhhhcCCceeeeecC-CchHHHHHHHHHHHhcC----------CCCcEEeeehHHhhhhCHHHHHHHHHHcCCce
Confidence 34444444444557789999 99999999999744333 457788888899999888888887 6679999
Q ss_pred EEEecCCCHHHHHHHHhcCCCcEEEEChHHHH-HHHHc------CCCCCCCcceEEeccccccC
Q 011963 287 VSLHPGAAIDHQITGLRSCEPEFLVSTPERLL-KLVSL------KAIDVSGVSLLVVDRLDSLS 343 (474)
Q Consensus 287 ~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~-~ll~~------~~~~l~~l~~lViDEad~ll 343 (474)
+.+..+++...+.... .|||..+|-..|- |+++- .......+.|-|+||+|.++
T Consensus 153 G~~~~~m~~~ek~~aY---~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 153 GVILAGMSPEEKRAAY---ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred eeccCCCChHHHHHHH---hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 9999999877655544 4799999987762 22221 11224578899999999886
No 196
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=96.05 E-value=0.015 Score=61.49 Aligned_cols=130 Identities=12% Similarity=-0.005 Sum_probs=86.0
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHH
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDH 297 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~ 297 (474)
+=++-+.||- ||||.- +|+++...+ .+++--|.|-||..|++.+..+ ||.+-.++|..-...
T Consensus 192 kIi~H~GPTN-SGKTy~----ALqrl~~ak----------sGvycGPLrLLA~EV~~r~na~---gipCdL~TGeE~~~~ 253 (700)
T KOG0953|consen 192 KIIMHVGPTN-SGKTYR----ALQRLKSAK----------SGVYCGPLRLLAHEVYDRLNAL---GIPCDLLTGEERRFV 253 (700)
T ss_pred eEEEEeCCCC-CchhHH----HHHHHhhhc----------cceecchHHHHHHHHHHHhhhc---CCCccccccceeeec
Confidence 3466678999 999964 567776643 6789999999999999988877 777777776532221
Q ss_pred HHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC----hhHHHHHHhhCCCCCcEEEEEccCCccHH
Q 011963 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSV 373 (474)
Q Consensus 298 q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~llfSAT~~~~v~ 373 (474)
.-. ...+..+=||-+.+- --...++.||||...|-| ...-+.++.......+..+ -+.+.
T Consensus 254 ~~~---~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvl 317 (700)
T KOG0953|consen 254 LDN---GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVL 317 (700)
T ss_pred CCC---CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHH
Confidence 100 113566667765431 113367899999999998 5566666666655554433 23467
Q ss_pred HHHHHhhc
Q 011963 374 PAVQNLLL 381 (474)
Q Consensus 374 ~l~~~~l~ 381 (474)
++++.++.
T Consensus 318 dlV~~i~k 325 (700)
T KOG0953|consen 318 DLVRKILK 325 (700)
T ss_pred HHHHHHHh
Confidence 77777764
No 197
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.95 E-value=0.12 Score=60.22 Aligned_cols=120 Identities=9% Similarity=0.040 Sum_probs=75.4
Q ss_pred hhhHHHHHHHhcC-CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCC
Q 011963 205 SWGIEFWKCYSSA-KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFG 283 (474)
Q Consensus 205 ~~Q~~~i~~~l~g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~ 283 (474)
+-|..++..+..+ +=++++.+-| ||||... -++. .+... .|..++.++||--=|..+.+ ..|
T Consensus 384 ~eQ~~Av~~i~~~~r~~~v~G~AG-TGKTt~l-~~~~-~~~e~--------~G~~V~g~ApTgkAA~~L~e------~~G 446 (1102)
T PRK13826 384 DEQKTAIEHVAGPARIAAVVGRAG-AGKTTMM-KAAR-EAWEA--------AGYRVVGGALAGKAAEGLEK------EAG 446 (1102)
T ss_pred HHHHHHHHHHhccCCeEEEEeCCC-CCHHHHH-HHHH-HHHHH--------cCCeEEEEcCcHHHHHHHHH------hhC
Confidence 3399999988654 5577888999 9998543 2333 33332 36688999998766655432 124
Q ss_pred cEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhCC-CCCcEE
Q 011963 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSIS-GKPHTV 362 (474)
Q Consensus 284 i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~-~~~q~l 362 (474)
+...++.+ ++.-...+...+..-.+||||||- |++..+|..++...+ ...++|
T Consensus 447 i~a~TIas-------------------------~ll~~~~~~~~l~~~~vlVIDEAs-Mv~~~~m~~Ll~~~~~~garvV 500 (1102)
T PRK13826 447 IQSRTLSS-------------------------WELRWNQGRDQLDNKTVFVLDEAG-MVASRQMALFVEAVTRAGAKLV 500 (1102)
T ss_pred CCeeeHHH-------------------------HHhhhccCccCCCCCcEEEEECcc-cCCHHHHHHHHHHHHhcCCEEE
Confidence 54433221 100001122345667799999997 556777888888775 578888
Q ss_pred EEEcc
Q 011963 363 VFNDC 367 (474)
Q Consensus 363 lfSAT 367 (474)
++.-+
T Consensus 501 LVGD~ 505 (1102)
T PRK13826 501 LVGDP 505 (1102)
T ss_pred EECCH
Confidence 87554
No 198
>PRK08181 transposase; Validated
Probab=95.90 E-value=0.1 Score=51.43 Aligned_cols=48 Identities=10% Similarity=0.042 Sum_probs=28.5
Q ss_pred HhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHH
Q 011963 214 YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (474)
Q Consensus 214 ~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~ 273 (474)
+-.+.+++++.|+| +|||-... .+...+.. .+-.+ +.++..+|+.++.
T Consensus 103 ~~~~~nlll~Gp~G-tGKTHLa~-Aia~~a~~---------~g~~v-~f~~~~~L~~~l~ 150 (269)
T PRK08181 103 LAKGANLLLFGPPG-GGKSHLAA-AIGLALIE---------NGWRV-LFTRTTDLVQKLQ 150 (269)
T ss_pred HhcCceEEEEecCC-CcHHHHHH-HHHHHHHH---------cCCce-eeeeHHHHHHHHH
Confidence 44678999999999 99984222 22222332 23344 4445566766654
No 199
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.87 E-value=0.36 Score=50.12 Aligned_cols=69 Identities=4% Similarity=0.047 Sum_probs=37.3
Q ss_pred EChHHHHHHHHcCCCCCCCcceEEeccccccCC----hhHHHHHHhhCCCCCcEEEEEccCCc-cHHHHHHHhhc
Q 011963 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTY-TSVPAVQNLLL 381 (474)
Q Consensus 312 ~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~llfSAT~~~-~v~~l~~~~l~ 381 (474)
.+|..|.+.+..-.- -.+.++++||-+=+... ..++..++....+..-.+++|||... ++.+.+..|-.
T Consensus 303 ~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~ 376 (436)
T PRK11889 303 RDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD 376 (436)
T ss_pred CCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcC
Confidence 456665554432100 11356788887777665 34444455443334345678887654 45666666643
No 200
>PRK06526 transposase; Provisional
Probab=95.86 E-value=0.048 Score=53.39 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=24.8
Q ss_pred CCcceEEeccccccCC----hhHHHHHHhhCCCCCcEEEEEccCC
Q 011963 329 SGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLT 369 (474)
Q Consensus 329 ~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~llfSAT~~ 369 (474)
....+|||||+|.+.. ...+-.++...-.+..+|+.|..-+
T Consensus 158 ~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~ 202 (254)
T PRK06526 158 GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPF 202 (254)
T ss_pred ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCH
Confidence 4467999999998753 3345555543323345666555543
No 201
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.77 E-value=0.88 Score=56.68 Aligned_cols=208 Identities=11% Similarity=0.041 Sum_probs=111.0
Q ss_pred hhhHHHHHHHhcC--CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccC
Q 011963 205 SWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF 282 (474)
Q Consensus 205 ~~Q~~~i~~~l~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~ 282 (474)
+-|..|+..++.. +=.++..+-| +|||.. +-.+..+... .|..+++++||..-|.++.+..
T Consensus 432 ~~Q~~Av~~il~s~~~v~ii~G~aG-TGKTt~--l~~l~~~~~~--------~G~~V~~lAPTgrAA~~L~e~~------ 494 (1960)
T TIGR02760 432 PSNKDAVSTLFTSTKRFIIINGFGG-TGSTEI--AQLLLHLASE--------QGYEIQIITAGSLSAQELRQKI------ 494 (1960)
T ss_pred HHHHHHHHHHHhCCCCeEEEEECCC-CCHHHH--HHHHHHHHHh--------cCCeEEEEeCCHHHHHHHHHHh------
Confidence 3399999999886 4577778899 999853 2333333332 3678999999987666655432
Q ss_pred CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhC-CCCCcE
Q 011963 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI-SGKPHT 361 (474)
Q Consensus 283 ~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l-~~~~q~ 361 (474)
|+....++ .....+.. + .-..|..+++ .....+..-++||||||- |++..++..++... +.+.++
T Consensus 495 g~~A~Ti~------~~l~~l~~--~-~~~~tv~~fl----~~~~~l~~~~vlIVDEAs-Ml~~~~~~~Ll~~a~~~garv 560 (1960)
T TIGR02760 495 PRLASTFI------TWVKNLFN--D-DQDHTVQGLL----DKSSPFSNKDIFVVDEAN-KLSNNELLKLIDKAEQHNSKL 560 (1960)
T ss_pred cchhhhHH------HHHHhhcc--c-ccchhHHHhh----cccCCCCCCCEEEEECCC-CCCHHHHHHHHHHHhhcCCEE
Confidence 22111111 11111111 1 1122222332 222335667899999997 55577788888766 477899
Q ss_pred EEEEccC--Cc----cHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCc
Q 011963 362 VVFNDCL--TY----TSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLK 435 (474)
Q Consensus 362 llfSAT~--~~----~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k 435 (474)
|++.-+- +. .+-.++... +-| .+.+... ......+ .+... ....+... +...++.-.. ....
T Consensus 561 VlvGD~~QL~sV~aG~~f~~L~~~-gv~--t~~l~~i-~rq~~~v--~i~~~-~~~~r~~~---ia~~y~~L~~--~r~~ 628 (1960)
T TIGR02760 561 ILLNDSAQRQGMSAGSAIDLLKEG-GVT--TYAWVDT-KQQKASV--EISEA-VDKLRVDY---IASAWLDLTP--DRQN 628 (1960)
T ss_pred EEEcChhhcCccccchHHHHHHHC-CCc--EEEeecc-cccCcce--eeecc-CchHHHHH---HHHHHHhccc--ccCc
Confidence 9885542 22 233322221 112 2333221 1111222 12222 22334333 3333333221 1457
Q ss_pred EEEEEccchhHHHHHHHHhh
Q 011963 436 VLYIVGKDSKFQNLVSTLKC 455 (474)
Q Consensus 436 ~LVF~~s~~~a~~l~~~L~~ 455 (474)
++||..+..+...|....+.
T Consensus 629 tliv~~t~~dr~~Ln~~iR~ 648 (1960)
T TIGR02760 629 SQVLATTHREQQDLTQIIRN 648 (1960)
T ss_pred eEEEcCCcHHHHHHHHHHHH
Confidence 99999998888888776643
No 202
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=95.70 E-value=0.69 Score=52.18 Aligned_cols=143 Identities=13% Similarity=-0.001 Sum_probs=72.7
Q ss_pred cEEEEcCCCcchhHHHHHHHHHHHH-HHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccC----CcEEEEEecC
Q 011963 219 DILETSGSSSTIVQIAWIVATAADS-IARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF----GIHTVSLHPG 292 (474)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l-~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~----~i~v~~~~gg 292 (474)
-.|.+--.| -||||-.+ ..++.+ +..+. .--++|||+|--- +..++.+|..+ ..+ .|.|..+..=
T Consensus 698 GcILAHcMG-LGKTlQVv-tflhTvL~c~kl------g~ktaLvV~PlNt-~~NW~~EFekWm~~~e~~~~leV~eL~~v 768 (1567)
T KOG1015|consen 698 GCILAHCMG-LGKTLQVV-TFLHTVLLCDKL------GFKTALVVCPLNT-ALNWMNEFEKWMEGLEDDEKLEVSELATV 768 (1567)
T ss_pred chHHHHhhc-ccceehhh-HHHHHHHHhhcc------CCceEEEEcchHH-HHHHHHHHHHhcccccccccceeehhhhc
Confidence 344444567 89997543 233332 33221 2458999999543 34566667665 222 4555544332
Q ss_pred CCHHHHHHHH----hcCCCcEEEEChHHHHHHHHc-----------CCCCCCCcceEEeccccccCC-hhHHHHHHhhCC
Q 011963 293 AAIDHQITGL----RSCEPEFLVSTPERLLKLVSL-----------KAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQSIS 356 (474)
Q Consensus 293 ~~~~~q~~~l----~~~~~~IlV~TP~rL~~ll~~-----------~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~l~ 356 (474)
.........| ..+|+-||==+--|.+..=.. ..+.-..-++||.||+|.|-. ...+..-+..+.
T Consensus 769 kr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~ir 848 (1567)
T KOG1015|consen 769 KRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIR 848 (1567)
T ss_pred cChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHH
Confidence 2222222222 344554443333333221000 112223467999999999887 555555555555
Q ss_pred CCCcEEEEEccCCc
Q 011963 357 GKPHTVVFNDCLTY 370 (474)
Q Consensus 357 ~~~q~llfSAT~~~ 370 (474)
..++++|....+-+
T Consensus 849 tkRRI~LTGTPLQN 862 (1567)
T KOG1015|consen 849 TKRRIILTGTPLQN 862 (1567)
T ss_pred hheeEEeecCchhh
Confidence 55655554333333
No 203
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.51 E-value=0.069 Score=52.39 Aligned_cols=41 Identities=17% Similarity=0.129 Sum_probs=25.9
Q ss_pred HHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe
Q 011963 213 CYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV 263 (474)
Q Consensus 213 ~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~ 263 (474)
-+..|.-+++.+++| +|||. |++-++..+... .+..++|++
T Consensus 26 G~~~g~~~~i~g~~G-~GKT~-l~~~~~~~~~~~--------~g~~vl~iS 66 (271)
T cd01122 26 GLRKGELIILTAGTG-VGKTT-FLREYALDLITQ--------HGVRVGTIS 66 (271)
T ss_pred EEcCCcEEEEEcCCC-CCHHH-HHHHHHHHHHHh--------cCceEEEEE
Confidence 345567888999999 99994 444444333321 255677775
No 204
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.46 E-value=0.0052 Score=56.61 Aligned_cols=134 Identities=21% Similarity=0.134 Sum_probs=61.2
Q ss_pred EEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh-cccCCcEEEEEecCCCHHHHH
Q 011963 221 LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQI 299 (474)
Q Consensus 221 l~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~-l~~~~i~v~~~~gg~~~~~q~ 299 (474)
+++|+-| -|||.+..+.+...+.. ....++|-+|+.+=+..+++.+.. +..++++..... .....
T Consensus 1 VltA~RG-RGKSa~lGl~~a~l~~~---------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~----~~~~~ 66 (177)
T PF05127_consen 1 VLTADRG-RGKSAALGLAAAALIQK---------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKK----RIGQI 66 (177)
T ss_dssp -EEE-TT-SSHHHHHHHCCCCSSS--------------EEEE-SS--S-HHHHHCC------------------------
T ss_pred CccCCCC-CCHHHHHHHHHHHHHHh---------cCceEEEecCCHHHHHHHHHHHHhhcccccccccccc----ccccc
Confidence 5789999 99998776654422222 134788999999998888887655 344444430000 00011
Q ss_pred HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhCCCCCcEEEEEccCCcc---HHHHH
Q 011963 300 TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYT---SVPAV 376 (474)
Q Consensus 300 ~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~llfSAT~~~~---v~~l~ 376 (474)
..+...+..|-...|..+...- ...++||||||=.+- .+.+..++.. ...++||.|+... -+-+.
T Consensus 67 ~~~~~~~~~i~f~~Pd~l~~~~-------~~~DlliVDEAAaIp-~p~L~~ll~~----~~~vv~stTi~GYEGtGRgF~ 134 (177)
T PF05127_consen 67 IKLRFNKQRIEFVAPDELLAEK-------PQADLLIVDEAAAIP-LPLLKQLLRR----FPRVVFSTTIHGYEGTGRGFS 134 (177)
T ss_dssp ------CCC--B--HHHHCCT-----------SCEEECTGGGS--HHHHHHHHCC----SSEEEEEEEBSSTTBB-HHHH
T ss_pred cccccccceEEEECCHHHHhCc-------CCCCEEEEechhcCC-HHHHHHHHhh----CCEEEEEeeccccccCCceee
Confidence 1111124677788887764321 124789999997665 6666777643 3367788887653 34454
Q ss_pred HHhh
Q 011963 377 QNLL 380 (474)
Q Consensus 377 ~~~l 380 (474)
-+++
T Consensus 135 lkf~ 138 (177)
T PF05127_consen 135 LKFL 138 (177)
T ss_dssp HHHH
T ss_pred eehh
Confidence 4444
No 205
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.37 E-value=0.34 Score=47.13 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=27.5
Q ss_pred CCCcceEEeccccccCC----hhHHHHHHhhC-CCCCcEEEEEccCCc
Q 011963 328 VSGVSLLVVDRLDSLSK----GDTLSLIRQSI-SGKPHTVVFNDCLTY 370 (474)
Q Consensus 328 l~~l~~lViDEad~ll~----~~~l~~Il~~l-~~~~q~llfSAT~~~ 370 (474)
+..+++|||||++.... ...+..|+..- .....+++.|---+.
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~ 207 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNME 207 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHH
Confidence 44678999999998765 33455566542 345667776654333
No 206
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.26 E-value=0.14 Score=51.93 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=43.0
Q ss_pred HHHHhCCCCccccCCCchhhHHHHHHH-hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccH
Q 011963 188 NAMRHDGVEQDNPLFVNSWGIEFWKCY-SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQ 266 (474)
Q Consensus 188 ~~l~~~g~~~ptpi~~~~~Q~~~i~~~-l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Ptr 266 (474)
..|...|+-.+ - |...+..+ ..+++++++++|| |||| .++-.++..+.... ..-+.++|-.+.
T Consensus 125 ~~l~~~g~~~~--~-----~~~~L~~~v~~~~~ilI~G~tG-SGKT-Tll~aL~~~~~~~~-------~~~rivtIEd~~ 188 (319)
T PRK13894 125 DQYVERGIMTA--A-----QREAIIAAVRAHRNILVIGGTG-SGKT-TLVNAIINEMVIQD-------PTERVFIIEDTG 188 (319)
T ss_pred HHHHhcCCCCH--H-----HHHHHHHHHHcCCeEEEECCCC-CCHH-HHHHHHHHhhhhcC-------CCceEEEEcCCC
Confidence 44555676433 2 66666654 5567999999999 9999 55555554443211 244778888888
Q ss_pred HHH
Q 011963 267 EKA 269 (474)
Q Consensus 267 eLa 269 (474)
||.
T Consensus 189 El~ 191 (319)
T PRK13894 189 EIQ 191 (319)
T ss_pred ccc
Confidence 873
No 207
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.24 E-value=1.2 Score=44.07 Aligned_cols=129 Identities=6% Similarity=0.072 Sum_probs=67.9
Q ss_pred cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEE-eccH--HHHHHHHHHHHhcccCCcEEEEEecC
Q 011963 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL-VSSQ--EKAAKVRSVCKPLKAFGIHTVSLHPG 292 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil-~Ptr--eLa~Qi~~~~~~l~~~~i~v~~~~gg 292 (474)
.+..++++.|+| +|||..+.+-+. .+.. .+..+.++ +.+. ..+.|+...+..+ ++.+..
T Consensus 74 ~~~~i~~~G~~g-~GKTtl~~~l~~-~l~~---------~~~~v~~i~~D~~ri~~~~ql~~~~~~~---~~~~~~---- 135 (270)
T PRK06731 74 EVQTIALIGPTG-VGKTTTLAKMAW-QFHG---------KKKTVGFITTDHSRIGTVQQLQDYVKTI---GFEVIA---- 135 (270)
T ss_pred CCCEEEEECCCC-CcHHHHHHHHHH-HHHH---------cCCeEEEEecCCCCHHHHHHHHHHhhhc---CceEEe----
Confidence 456788889999 999976653322 2221 12334333 3232 3344443332222 332221
Q ss_pred CCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC----hhHHHHHHhhCCCCCcEEEEEccC
Q 011963 293 AAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCL 368 (474)
Q Consensus 293 ~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~llfSAT~ 368 (474)
..+|..|.+.+..- -...+.++++||-+=++.. ..++..++....+..-.+++|||.
T Consensus 136 ------------------~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~ 196 (270)
T PRK06731 136 ------------------VRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM 196 (270)
T ss_pred ------------------cCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc
Confidence 13455554443320 0113467888998887754 444555555444443466789987
Q ss_pred Cc-cHHHHHHHhhc
Q 011963 369 TY-TSVPAVQNLLL 381 (474)
Q Consensus 369 ~~-~v~~l~~~~l~ 381 (474)
.. ++.+.++.|-.
T Consensus 197 ~~~d~~~~~~~f~~ 210 (270)
T PRK06731 197 KSKDMIEIITNFKD 210 (270)
T ss_pred CHHHHHHHHHHhCC
Confidence 54 56677777643
No 208
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.18 E-value=0.11 Score=59.28 Aligned_cols=156 Identities=8% Similarity=0.033 Sum_probs=91.7
Q ss_pred CchhhHHHHHHHh-----cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHH
Q 011963 203 VNSWGIEFWKCYS-----SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK 277 (474)
Q Consensus 203 ~~~~Q~~~i~~~l-----~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 277 (474)
.++||...+..+. .+.+-+++...| -|||+.-+.-+.. +..... ...+.++|++|+- ++.++.+.+.
T Consensus 339 lr~yq~~g~~wl~~~l~~~~~~~ilaD~mg-lGKTiq~i~~l~~-~~~~~~-----~~~~~~liv~p~s-~~~nw~~e~~ 410 (866)
T COG0553 339 LRPYQLEGVNWLSELLRSNLLGGILADDMG-LGKTVQTIALLLS-LLESIK-----VYLGPALIVVPAS-LLSNWKREFE 410 (866)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCccccccc-chhHHHHHHHHHh-hhhccc-----CCCCCeEEEecHH-HHHHHHHHHh
Confidence 3566888887755 256778889999 9999765443333 222110 0145789999964 5566777776
Q ss_pred hcccCCcE-EEEEecCCCH----HHHHHHHhcCC----CcEEEEChHHHHHHH-HcCCCCCCCcceEEeccccccCC-hh
Q 011963 278 PLKAFGIH-TVSLHPGAAI----DHQITGLRSCE----PEFLVSTPERLLKLV-SLKAIDVSGVSLLVVDRLDSLSK-GD 346 (474)
Q Consensus 278 ~l~~~~i~-v~~~~gg~~~----~~q~~~l~~~~----~~IlV~TP~rL~~ll-~~~~~~l~~l~~lViDEad~ll~-~~ 346 (474)
.+.. .++ +...+|.... ......+.... ++++++|-+-|...+ ....+.-....++|+||||++-. ..
T Consensus 411 k~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s 489 (866)
T COG0553 411 KFAP-DLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQS 489 (866)
T ss_pred hhCc-cccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhh
Confidence 6633 233 6666665541 22333333212 799999998887742 12333444577999999999776 22
Q ss_pred HHHHHHhhCCCCCcEEEEEccC
Q 011963 347 TLSLIRQSISGKPHTVVFNDCL 368 (474)
Q Consensus 347 ~l~~Il~~l~~~~q~llfSAT~ 368 (474)
..-.-+..+..... +++|.|.
T Consensus 490 ~~~~~l~~~~~~~~-~~LtgTP 510 (866)
T COG0553 490 SEGKALQFLKALNR-LDLTGTP 510 (866)
T ss_pred HHHHHHHHHhhcce-eeCCCCh
Confidence 22222223333333 5556664
No 209
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.17 E-value=0.12 Score=49.21 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=27.6
Q ss_pred CcceEEeccccccCC--hhHHHHHHhhCCCCC-cEEEEEccCCc
Q 011963 330 GVSLLVVDRLDSLSK--GDTLSLIRQSISGKP-HTVVFNDCLTY 370 (474)
Q Consensus 330 ~l~~lViDEad~ll~--~~~l~~Il~~l~~~~-q~llfSAT~~~ 370 (474)
+..+|||||+|.+-. ...+..++....... .+++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 456899999999865 555666665544333 35778877654
No 210
>PRK05642 DNA replication initiation factor; Validated
Probab=95.13 E-value=0.077 Score=51.20 Aligned_cols=41 Identities=12% Similarity=0.209 Sum_probs=27.5
Q ss_pred CcceEEeccccccCC----hhHHHHHHhhCCCCCcEEEEEccCCc
Q 011963 330 GVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 330 ~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~llfSAT~~~ 370 (474)
++++||||++|.+.. ...+-.|+..+......++++++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 456899999998865 45577777766543344666666554
No 211
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.12 E-value=0.078 Score=44.92 Aligned_cols=18 Identities=11% Similarity=-0.116 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCcchhHHHH
Q 011963 217 AKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (474)
+..+++.+|+| ||||...
T Consensus 2 ~~~~~l~G~~G-~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPG-SGKTTLA 19 (148)
T ss_pred CCEEEEECCCC-CcHHHHH
Confidence 56789999999 9999643
No 212
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.10 E-value=0.53 Score=44.91 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=30.9
Q ss_pred CCcceEEeccccccCC----hhHHHHHHhhCC-CCCcEEEEEccCCccH
Q 011963 329 SGVSLLVVDRLDSLSK----GDTLSLIRQSIS-GKPHTVVFNDCLTYTS 372 (474)
Q Consensus 329 ~~l~~lViDEad~ll~----~~~l~~Il~~l~-~~~q~llfSAT~~~~v 372 (474)
.+.++|+||.+|.+.. .+.+-.++..+. ...|+|+.|...|..+
T Consensus 96 ~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 4577899999999988 455666666553 5567777777777653
No 213
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.01 E-value=0.14 Score=48.66 Aligned_cols=40 Identities=8% Similarity=0.178 Sum_probs=24.1
Q ss_pred cceEEeccccccCC----hhHHHHHHhhCCCCCcEEEEEccCCc
Q 011963 331 VSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 331 l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~llfSAT~~~ 370 (474)
..+|||||+|.+.. ...+..++..+......+++|++.+.
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~ 134 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAP 134 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCCh
Confidence 46899999999875 34455555443222235566666543
No 214
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.97 E-value=0.16 Score=51.68 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=28.1
Q ss_pred hhhHHHHHHHhcC-C---cEEEEcCCCcchhHHHHHHHHHHHHHH
Q 011963 205 SWGIEFWKCYSSA-K---DILETSGSSSTIVQIAWIVATAADSIA 245 (474)
Q Consensus 205 ~~Q~~~i~~~l~g-~---dvl~~A~TG~SGKTlaf~lp~l~~l~~ 245 (474)
|||...|..++.. + -+|++.|.| .|||.. +.-+...+..
T Consensus 6 PWl~~~~~~~~~~~r~~ha~Lf~G~~G-~GK~~~-A~~~A~~llC 48 (328)
T PRK05707 6 PWQQSLWQQLAGRGRHPHAYLLHGPAG-IGKRAL-AERLAAALLC 48 (328)
T ss_pred CCcHHHHHHHHHCCCcceeeeeECCCC-CCHHHH-HHHHHHHHcC
Confidence 7899999888754 3 588999999 999843 3334445554
No 215
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.95 E-value=1.7 Score=45.76 Aligned_cols=64 Identities=11% Similarity=0.162 Sum_probs=35.8
Q ss_pred EChHHHHHHHHcCCCCCCCcceEEeccccccCC----hhHHHHHHhhC-CCCCcEEEEEccCCcc-HHHHHHHh
Q 011963 312 STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSI-SGKPHTVVFNDCLTYT-SVPAVQNL 379 (474)
Q Consensus 312 ~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l-~~~~q~llfSAT~~~~-v~~l~~~~ 379 (474)
.+|..+...+.. +.+.++++||-+-+.-. ...+..++... .+..-.+++|||.... +.+.+..|
T Consensus 285 ~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f 354 (424)
T PRK05703 285 YDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHF 354 (424)
T ss_pred CCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHh
Confidence 344444444432 23467888888765543 44555565522 2234478889987754 45555554
No 216
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.91 E-value=0.21 Score=53.05 Aligned_cols=43 Identities=14% Similarity=0.112 Sum_probs=28.2
Q ss_pred CCcceEEeccccccCC----hhHHHHHHhhCC-CCCcEEEEEccCCcc
Q 011963 329 SGVSLLVVDRLDSLSK----GDTLSLIRQSIS-GKPHTVVFNDCLTYT 371 (474)
Q Consensus 329 ~~l~~lViDEad~ll~----~~~l~~Il~~l~-~~~q~llfSAT~~~~ 371 (474)
.++.+|||||+|.+.. .+.+..++..+- ...|+|+.|-..|..
T Consensus 205 ~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~ 252 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPEL 252 (450)
T ss_pred ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHH
Confidence 3567899999998875 455666666553 445666665555543
No 217
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.89 E-value=0.42 Score=54.11 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=24.1
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCC-CCCcEEEEEc
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSIS-GKPHTVVFND 366 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~-~~~q~llfSA 366 (474)
..+.+|||||+|.|.. .+.|..|++... ...++++...
T Consensus 868 r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGI 908 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAI 908 (1164)
T ss_pred ccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEe
Confidence 3466899999999997 555655666432 2345444433
No 218
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.86 E-value=0.21 Score=50.58 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=36.0
Q ss_pred hHHHHHHHhc-CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHH
Q 011963 207 GIEFWKCYSS-AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (474)
Q Consensus 207 Q~~~i~~~l~-g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa 269 (474)
|...+..+.. +.++|++.+|| |||| .++-.++..+.... ..-+.++|=.+.||.
T Consensus 133 ~~~~L~~~v~~~~nilI~G~tG-SGKT-Tll~aL~~~i~~~~-------~~~rivtiEd~~El~ 187 (323)
T PRK13833 133 QASVIRSAIDSRLNIVISGGTG-SGKT-TLANAVIAEIVASA-------PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHHHHHHcCCeEEEECCCC-CCHH-HHHHHHHHHHhcCC-------CCceEEEecCCcccc
Confidence 7766655544 56999999999 9999 44444554443211 244778888888874
No 219
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.81 E-value=0.25 Score=49.97 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=28.6
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEc
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFND 366 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSA 366 (474)
...+++|||+||.|.. ...+.+++..-|.++.+|+.|.
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~ 151 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISA 151 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEEC
Confidence 4678999999999986 6666667776666666666654
No 220
>PRK06893 DNA replication initiation factor; Validated
Probab=94.80 E-value=0.11 Score=50.02 Aligned_cols=43 Identities=9% Similarity=0.044 Sum_probs=29.4
Q ss_pred CCcceEEeccccccCC----hhHHHHHHhhCC-CCCcEEEEEccCCcc
Q 011963 329 SGVSLLVVDRLDSLSK----GDTLSLIRQSIS-GKPHTVVFNDCLTYT 371 (474)
Q Consensus 329 ~~l~~lViDEad~ll~----~~~l~~Il~~l~-~~~q~llfSAT~~~~ 371 (474)
.+.++|||||+|.+.. ...+..++..+. ...+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 4567999999999875 334555555543 345677888887654
No 221
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.78 E-value=0.11 Score=54.66 Aligned_cols=28 Identities=11% Similarity=-0.073 Sum_probs=23.5
Q ss_pred hHHHHHHHhcCCcEEEEcCCCcchhHHHH
Q 011963 207 GIEFWKCYSSAKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 207 Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf 235 (474)
....+..+..++++++..|+| +|||...
T Consensus 184 le~l~~~L~~~~~iil~GppG-tGKT~lA 211 (459)
T PRK11331 184 IETILKRLTIKKNIILQGPPG-VGKTFVA 211 (459)
T ss_pred HHHHHHHHhcCCCEEEECCCC-CCHHHHH
Confidence 566677788899999999999 9999644
No 222
>PRK12377 putative replication protein; Provisional
Probab=94.71 E-value=0.55 Score=45.79 Aligned_cols=98 Identities=14% Similarity=0.196 Sum_probs=54.2
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHH
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDH 297 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~ 297 (474)
..+++..|+| +|||-.. ..+...+.. .+..+ +.++..+|..++...+.. +....
T Consensus 102 ~~l~l~G~~G-tGKThLa-~AIa~~l~~---------~g~~v-~~i~~~~l~~~l~~~~~~-------------~~~~~- 155 (248)
T PRK12377 102 TNFVFSGKPG-TGKNHLA-AAIGNRLLA---------KGRSV-IVVTVPDVMSRLHESYDN-------------GQSGE- 155 (248)
T ss_pred CeEEEECCCC-CCHHHHH-HHHHHHHHH---------cCCCe-EEEEHHHHHHHHHHHHhc-------------cchHH-
Confidence 5799999999 9998422 233434433 23333 455666777666544210 00001
Q ss_pred HHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC----hhHHHHHHhhC-CCCCcEEEEEc
Q 011963 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSI-SGKPHTVVFND 366 (474)
Q Consensus 298 q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l-~~~~q~llfSA 366 (474)
.++. .+..+.+|||||++.... .+.+..|+..- ....++++.|-
T Consensus 156 ------------------~~l~-------~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 156 ------------------KFLQ-------ELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred ------------------HHHH-------HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1111 145678999999965543 44555555543 34466766554
No 223
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.71 E-value=0.12 Score=49.91 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=24.5
Q ss_pred cceEEeccccccCC----hhHHHHHHhhCC-CCCcEEEEEccCCc
Q 011963 331 VSLLVVDRLDSLSK----GDTLSLIRQSIS-GKPHTVVFNDCLTY 370 (474)
Q Consensus 331 l~~lViDEad~ll~----~~~l~~Il~~l~-~~~q~llfSAT~~~ 370 (474)
+.+|+|||+|.+.. ...+..++..+- .....+++|++.|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 46899999999875 445555555542 22223555666554
No 224
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.69 E-value=0.4 Score=48.12 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=35.1
Q ss_pred hHHHHHH-HhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHH
Q 011963 207 GIEFWKC-YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (474)
Q Consensus 207 Q~~~i~~-~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa 269 (474)
|...+.. +..+++++++.||| ||||- ++-.++..+.... ..-+.++|-.+.||.
T Consensus 121 ~~~~L~~~v~~~~~ilI~G~tG-SGKTT-ll~al~~~i~~~~-------~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 121 QRDVLREAVLARKNILVVGGTG-SGKTT-LANALLAEIAKND-------PTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHHHHHHcCCeEEEECCCC-CCHHH-HHHHHHHHhhccC-------CCceEEEECCchhhc
Confidence 4555544 45556999999999 99994 4444444443311 234788888888884
No 225
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.66 E-value=0.27 Score=52.24 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=24.9
Q ss_pred CcceEEeccccccCC----hhHHHHHHhhC-CCCCcEEEEEccCCc
Q 011963 330 GVSLLVVDRLDSLSK----GDTLSLIRQSI-SGKPHTVVFNDCLTY 370 (474)
Q Consensus 330 ~l~~lViDEad~ll~----~~~l~~Il~~l-~~~~q~llfSAT~~~ 370 (474)
++.+|||||+|.+.. ...+-.++..+ ....++++ +++.++
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iii-ts~~~p 255 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVL-TSDRPP 255 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEE-ECCCCH
Confidence 466899999999876 34455555544 23456555 555444
No 226
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=94.64 E-value=0.17 Score=42.95 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=48.2
Q ss_pred cEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHh
Q 011963 400 IIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHI 471 (474)
Q Consensus 400 i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~F 471 (474)
|.+.+...+ +.|...+..++..... . ..++||||++...++.++..|...++++. .++...++.|
T Consensus 2 i~~~~~~~~--~~k~~~i~~~i~~~~~--~---~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 74 (131)
T cd00079 2 IKQYVLPVE--DEKLEALLELLKEHLK--K---GGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDF 74 (131)
T ss_pred cEEEEEECC--HHHHHHHHHHHHhccc--C---CCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHH
Confidence 445555543 3688666666666532 2 67999999999999999999987766654 4566778888
Q ss_pred hc
Q 011963 472 KN 473 (474)
Q Consensus 472 k~ 473 (474)
++
T Consensus 75 ~~ 76 (131)
T cd00079 75 RE 76 (131)
T ss_pred Hc
Confidence 65
No 227
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.60 E-value=0.18 Score=44.50 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=24.2
Q ss_pred CCcceEEeccccccCC-------------hhHHHHHHhhCCCCCcEEEEEccCCc
Q 011963 329 SGVSLLVVDRLDSLSK-------------GDTLSLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 329 ~~l~~lViDEad~ll~-------------~~~l~~Il~~l~~~~q~llfSAT~~~ 370 (474)
....+|||||++.+++ ...+..++..+....-+++|....+.
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 4567999999998754 23444444444433444555444443
No 228
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.59 E-value=0.74 Score=53.20 Aligned_cols=92 Identities=16% Similarity=0.230 Sum_probs=69.9
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+.+++|++|+.+-+..++..++.+- .++++..++|+++.... ...+.++..+|||||- +-..++|+.++.
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~-p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~------iie~GIDIp~v~ 732 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELV-PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT------IIETGIDIPNAN 732 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC------hhhcccccccCC
Confidence 5689999999998888888877752 26899999999886544 3445667899999995 335789999999
Q ss_pred eEEeccccccCChhHHHHHHhhC
Q 011963 333 LLVVDRLDSLSKGDTLSLIRQSI 355 (474)
Q Consensus 333 ~lViDEad~ll~~~~l~~Il~~l 355 (474)
++|++.+|++. ..++-++....
T Consensus 733 ~VIi~~a~~~g-ls~l~Qr~GRv 754 (926)
T TIGR00580 733 TIIIERADKFG-LAQLYQLRGRV 754 (926)
T ss_pred EEEEecCCCCC-HHHHHHHhcCC
Confidence 99999999854 34444444444
No 229
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.53 E-value=0.17 Score=52.76 Aligned_cols=144 Identities=13% Similarity=0.135 Sum_probs=79.3
Q ss_pred EEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHH-HHHHHHHHHHhc-ccCCcEEEEEecCCCHHH
Q 011963 220 ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQE-KAAKVRSVCKPL-KAFGIHTVSLHPGAAIDH 297 (474)
Q Consensus 220 vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Ptre-La~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~ 297 (474)
.+..++.| ||||.+.++-++..+.... .+..+|++-||.. |-.-++..+..+ ..+|+....-....+.
T Consensus 4 ~i~~Ggrg-SGKS~~~~~~~~~~~~~~~-------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~-- 73 (396)
T TIGR01547 4 IIAKGGRR-SGKTFAIALKLVEKLAINK-------KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM-- 73 (396)
T ss_pred EEEeCCCC-cccHHHHHHHHHHHHHhcC-------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--
Confidence 56788999 9999999988887777751 3568899999988 666667776654 4344432111111110
Q ss_pred HHHHHhcCCCcEEEECh-HHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhCC--CCCcEEEEEccCCccHHH
Q 011963 298 QITGLRSCEPEFLVSTP-ERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSIS--GKPHTVVFNDCLTYTSVP 374 (474)
Q Consensus 298 q~~~l~~~~~~IlV~TP-~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~--~~~q~llfSAT~~~~v~~ 374 (474)
.+. +...|-.|++..- +.-..+ .....+.++.||||..+- .+.+..++..+. ...+.+++|.|....-..
T Consensus 74 ~i~-~~~~g~~i~f~g~~d~~~~i-----k~~~~~~~~~idEa~~~~-~~~~~~l~~rlr~~~~~~~i~~t~NP~~~~~w 146 (396)
T TIGR01547 74 EIK-ILNTGKKFIFKGLNDKPNKL-----KSGAGIAIIWFEEASQLT-FEDIKELIPRLRETGGKKFIIFSSNPESPLHW 146 (396)
T ss_pred EEE-ecCCCeEEEeecccCChhHh-----hCcceeeeehhhhhhhcC-HHHHHHHHHHhhccCCccEEEEEcCcCCCccH
Confidence 000 0110223444322 111111 112236899999999985 445555555553 222246777776543333
Q ss_pred HHHHhh
Q 011963 375 AVQNLL 380 (474)
Q Consensus 375 l~~~~l 380 (474)
+-..|+
T Consensus 147 ~~~~f~ 152 (396)
T TIGR01547 147 VKKRFI 152 (396)
T ss_pred HHHHHH
Confidence 344444
No 230
>PRK08727 hypothetical protein; Validated
Probab=94.46 E-value=0.13 Score=49.65 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=22.7
Q ss_pred CcceEEeccccccCC----hhHHHHHHhhCC-CCCcEEEEEccCCc
Q 011963 330 GVSLLVVDRLDSLSK----GDTLSLIRQSIS-GKPHTVVFNDCLTY 370 (474)
Q Consensus 330 ~l~~lViDEad~ll~----~~~l~~Il~~l~-~~~q~llfSAT~~~ 370 (474)
+..+|||||+|.+.. ...+-.++..+. ...++ ++++..++
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~v-I~ts~~~p 137 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITL-LYTARQMP 137 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeE-EEECCCCh
Confidence 446899999999875 233444444432 23344 44454443
No 231
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.45 E-value=0.77 Score=49.46 Aligned_cols=145 Identities=10% Similarity=0.069 Sum_probs=71.9
Q ss_pred CCcEEEEChHHHHHHHHc---CCCC---CCCcce-EEeccccccCC------hhH------HHH-HHhhC--CCCCcEEE
Q 011963 306 EPEFLVSTPERLLKLVSL---KAID---VSGVSL-LVVDRLDSLSK------GDT------LSL-IRQSI--SGKPHTVV 363 (474)
Q Consensus 306 ~~~IlV~TP~rL~~ll~~---~~~~---l~~l~~-lViDEad~ll~------~~~------l~~-Il~~l--~~~~q~ll 363 (474)
+.+|..+|-..|...+-+ ..+. |.+.++ ++-||||++-. .++ ++. ++-.+ .++--++.
T Consensus 81 ~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~le 160 (812)
T COG3421 81 AIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLLE 160 (812)
T ss_pred ceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceeeh
Confidence 789999999888765543 3333 444454 45699999976 222 222 12222 24455788
Q ss_pred EEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCC-chhHHHHHHHHH----HHHhhccCCCCCCcEEE
Q 011963 364 FNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCAS-DEEKILKGIQVL----DHAYGDHFHSEPLKVLY 438 (474)
Q Consensus 364 fSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~-~~~K~~~l~~lL----~~ll~~~~~~~~~k~LV 438 (474)
||||+|. -......|-.. + .+..+-. +-.-.+-.-.++.+.. ..-....|..++ ++++..+..-..+|+|.
T Consensus 161 f~at~~k-~k~v~~ky~dk-i-v~~y~lk-~f~e~gytk~i~~~s~~~nl~tr~l~alv~s~yr~~la~~~~i~fkpvil 236 (812)
T COG3421 161 FSATIPK-EKSVEDKYEDK-I-VVTYTLK-QFSEDGYTKNIYSLSYNKNLETRFLGALVSSLYRELLAQHHNIEFKPVIL 236 (812)
T ss_pred hhhcCCc-cccHHHHhccc-e-EEeeeHH-HhhhhcchhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhcCcccceeEE
Confidence 9999995 33444444332 2 2222211 0000111111111111 122222333333 34444443334689999
Q ss_pred EEc-cchhHHHHHHHHh
Q 011963 439 IVG-KDSKFQNLVSTLK 454 (474)
Q Consensus 439 F~~-s~~~a~~l~~~L~ 454 (474)
|-+ ++++.+.-+..+.
T Consensus 237 fks~~i~eska~y~~f~ 253 (812)
T COG3421 237 FKSERIEESKANYERFN 253 (812)
T ss_pred eecchhhhhHhhHHHHH
Confidence 985 5556655555553
No 232
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.38 E-value=2.1 Score=44.32 Aligned_cols=20 Identities=5% Similarity=-0.080 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCcchhHHHHH
Q 011963 216 SAKDILETSGSSSTIVQIAWI 236 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~ 236 (474)
.++-++++.|+| +|||....
T Consensus 205 ~~~ii~lvGptG-vGKTTt~a 224 (407)
T PRK12726 205 NHRIISLIGQTG-VGKTTTLV 224 (407)
T ss_pred CCeEEEEECCCC-CCHHHHHH
Confidence 356788999999 99996543
No 233
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.38 E-value=0.23 Score=45.04 Aligned_cols=39 Identities=10% Similarity=0.220 Sum_probs=28.7
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEcc
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDC 367 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT 367 (474)
...+++|||+||.|.. ...+.+++..-|.+..+++.+..
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 5688999999999997 77788888776666666655543
No 234
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.38 E-value=0.37 Score=58.05 Aligned_cols=126 Identities=11% Similarity=0.052 Sum_probs=72.5
Q ss_pred chhhHHHHHHHhcC--CcEEEEcCCCcchhHHHH--HHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 204 NSWGIEFWKCYSSA--KDILETSGSSSTIVQIAW--IVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 204 ~~~Q~~~i~~~l~g--~dvl~~A~TG~SGKTlaf--~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
++.|..|+..++.. +-+++....| +|||... ++-++..+... .+..++.++||---|..+.+
T Consensus 837 t~~Qr~Av~~iLts~dr~~~IqG~AG-TGKTT~l~~i~~~~~~l~e~--------~g~~V~glAPTgkAa~~L~e----- 902 (1623)
T PRK14712 837 TSGQRAATRMILETSDRFTVVQGYAG-VGKTTQFRAVMSAVNMLPES--------ERPRVVGLGPTHRAVGEMRS----- 902 (1623)
T ss_pred CHHHHHHHHHHHhCCCceEEEEeCCC-CCHHHHHHHHHHHHHHHhhc--------cCceEEEEechHHHHHHHHH-----
Confidence 34499999999966 6688889999 9999653 22222222111 35678889999877766542
Q ss_pred ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhCCC-C
Q 011963 280 KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-K 358 (474)
Q Consensus 280 ~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~-~ 358 (474)
.|+...+++ ..|.. . + + .-.........-.+||||||= |++..+|..++..++. .
T Consensus 903 --~Gi~A~TIa---------sfL~~-~-------~--~--~~~~~~~~~~~~~llIVDEAS-MV~~~~m~~ll~~~~~~g 958 (1623)
T PRK14712 903 --AGVDAQTLA---------SFLHD-T-------Q--L--QQRSGETPDFSNTLFLLDESS-MVGNTDMARAYALIAAGG 958 (1623)
T ss_pred --hCchHhhHH---------HHhcc-c-------c--c--hhhcccCCCCCCcEEEEEccc-cccHHHHHHHHHhhhhCC
Confidence 133221111 11111 0 0 0 000111112335899999995 4446677777776663 5
Q ss_pred CcEEEEEcc
Q 011963 359 PHTVVFNDC 367 (474)
Q Consensus 359 ~q~llfSAT 367 (474)
.++|++.-+
T Consensus 959 arvVLVGD~ 967 (1623)
T PRK14712 959 GRAVASGDT 967 (1623)
T ss_pred CEEEEEcch
Confidence 777777444
No 235
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=94.32 E-value=0.012 Score=55.12 Aligned_cols=45 Identities=20% Similarity=0.346 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccc
Q 011963 295 IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339 (474)
Q Consensus 295 ~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEa 339 (474)
.+.+...+.+..+.+-||||+|+..++....|.++.+.++|+|=.
T Consensus 185 ~~~~~k~~k~~~v~~gIgTp~Ri~~lv~~~~f~~~~lk~iIlD~s 229 (271)
T KOG3089|consen 185 VQAQVKLLKKRVVHLGIGTPGRIKELVKQGGFNLSPLKFIILDWS 229 (271)
T ss_pred HHHHHHHHhhcceeEeecCcHHHHHHHHhcCCCCCcceeEEeecc
Confidence 345555566546889999999999999999999999999999964
No 236
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.30 E-value=0.29 Score=54.45 Aligned_cols=150 Identities=13% Similarity=0.087 Sum_probs=90.8
Q ss_pred HHhCCCCccccCCCchhhHHHHHHHhcCC--cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHH
Q 011963 190 MRHDGVEQDNPLFVNSWGIEFWKCYSSAK--DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQE 267 (474)
Q Consensus 190 l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~--dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Ptre 267 (474)
+.....+.+..= |.+.+..++.++ -++++|.-| -|||.+..|.+. .+.... ....++|.+||.+
T Consensus 207 l~~l~~T~dQ~~-----~l~~~~~l~~~~~~~~vlTAdRG-RGKSA~lGi~~~-~~~~~~-------~~~~iiVTAP~~~ 272 (758)
T COG1444 207 LYELCLTEDQAE-----ALEILERLLDAPKRALVLTADRG-RGKSAALGIALA-AAARLA-------GSVRIIVTAPTPA 272 (758)
T ss_pred HhhhhcChhHHH-----HHHHHHHHHcCCCceEEEEcCCC-CcHhHHHhHHHH-HHHHhc-------CCceEEEeCCCHH
Confidence 455666666222 333445556554 688899999 999999888773 333221 1458899999999
Q ss_pred HHHHHHHHHHh-cccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChh
Q 011963 268 KAAKVRSVCKP-LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGD 346 (474)
Q Consensus 268 La~Qi~~~~~~-l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~ 346 (474)
=+..++..+.. |..+|+.-........ .+.........|=+-+|.... ..-++||||||=.|- .+
T Consensus 273 nv~~Lf~fa~~~l~~lg~~~~v~~d~~g---~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp-lp 338 (758)
T COG1444 273 NVQTLFEFAGKGLEFLGYKRKVAPDALG---EIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP-LP 338 (758)
T ss_pred HHHHHHHHHHHhHHHhCCcccccccccc---ceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC-hH
Confidence 99888876655 4444544322221100 001111113345566665432 116799999997665 66
Q ss_pred HHHHHHhhCCCCCcEEEEEccCCcc
Q 011963 347 TLSLIRQSISGKPHTVVFNDCLTYT 371 (474)
Q Consensus 347 ~l~~Il~~l~~~~q~llfSAT~~~~ 371 (474)
-+..++.. -+.++||.|+...
T Consensus 339 lL~~l~~~----~~rv~~sTTIhGY 359 (758)
T COG1444 339 LLHKLLRR----FPRVLFSTTIHGY 359 (758)
T ss_pred HHHHHHhh----cCceEEEeeeccc
Confidence 66677654 3578999998653
No 237
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.29 E-value=0.18 Score=48.53 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=32.4
Q ss_pred cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe---ccHHHHHHHH
Q 011963 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV---SSQEKAAKVR 273 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~---PtreLa~Qi~ 273 (474)
.|.=+++++++| +||| +|++-++..+... .+..+++++ |..+++..+.
T Consensus 12 ~G~l~lI~G~~G-~GKT-~~~~~~~~~~~~~--------~g~~vly~s~E~~~~~~~~r~~ 62 (242)
T cd00984 12 PGDLIIIAARPS-MGKT-AFALNIAENIAKK--------QGKPVLFFSLEMSKEQLLQRLL 62 (242)
T ss_pred CCeEEEEEeCCC-CCHH-HHHHHHHHHHHHh--------CCCceEEEeCCCCHHHHHHHHH
Confidence 445678899999 9999 6666665555542 255778887 5566665543
No 238
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=94.27 E-value=0.26 Score=55.54 Aligned_cols=119 Identities=13% Similarity=0.066 Sum_probs=71.1
Q ss_pred hHHHHHHHhcCCc-EEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcE
Q 011963 207 GIEFWKCYSSAKD-ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIH 285 (474)
Q Consensus 207 Q~~~i~~~l~g~d-vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~ 285 (474)
|++|+-.++..+| .|+..=.| ||||-.-. .++..|.. .+..+|+.+=|..=+..| +.+|.+.++.
T Consensus 674 Qr~A~~k~L~aedy~LI~GMPG-TGKTTtI~-~LIkiL~~---------~gkkVLLtsyThsAVDNI---LiKL~~~~i~ 739 (1100)
T KOG1805|consen 674 QRQALLKALAAEDYALILGMPG-TGKTTTIS-LLIKILVA---------LGKKVLLTSYTHSAVDNI---LIKLKGFGIY 739 (1100)
T ss_pred HHHHHHHHHhccchheeecCCC-CCchhhHH-HHHHHHHH---------cCCeEEEEehhhHHHHHH---HHHHhccCcc
Confidence 9999999999986 45556668 99986532 23333333 366888888776554444 4455444554
Q ss_pred EEEEecCCCHHHH-----------------HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC
Q 011963 286 TVSLHPGAAIDHQ-----------------ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK 344 (474)
Q Consensus 286 v~~~~gg~~~~~q-----------------~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~ 344 (474)
..-+-.+...-.+ ....-. .+.||.+|---+.+ ..|....++|.|||||-.|+.
T Consensus 740 ~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~-~~~IVa~TClgi~~----plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 740 ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLD-QTSIVACTCLGINH----PLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred eeecCCccccchHHHHHhcccccchhhHHHHHHHhC-CCcEEEEEccCCCc----hhhhccccCEEEEcccccccc
Confidence 3322222211111 112223 57899988644433 234445577999999998875
No 239
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.26 E-value=0.13 Score=51.24 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=60.7
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhh-hcC-CCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCH
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSIARKE-KEG-FSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAI 295 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~-~~~-~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~ 295 (474)
.+++++.+|| .|||. ++.++..... ... ....-|-.+|-+|...=....|..+-.. +|.... .....
T Consensus 62 p~lLivG~sn-nGKT~-----Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~--lgaP~~---~~~~~ 130 (302)
T PF05621_consen 62 PNLLIVGDSN-NGKTM-----IIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEA--LGAPYR---PRDRV 130 (302)
T ss_pred CceEEecCCC-CcHHH-----HHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHH--hCcccC---CCCCH
Confidence 4899999999 99997 4455554221 111 1112355666677766656566544332 111110 01111
Q ss_pred HHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-----hhHHHHHHhhCCCCCc
Q 011963 296 DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-----GDTLSLIRQSISGKPH 360 (474)
Q Consensus 296 ~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~-----~~~l~~Il~~l~~~~q 360 (474)
.. +.. ..+.+|. --++++|||||.|.++. +.++...++.+.+..+
T Consensus 131 ~~----~~~-----------~~~~llr-----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ 180 (302)
T PF05621_consen 131 AK----LEQ-----------QVLRLLR-----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQ 180 (302)
T ss_pred HH----HHH-----------HHHHHHH-----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccC
Confidence 11 000 1112222 23578999999999987 6666667777765544
No 240
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.12 E-value=0.24 Score=58.45 Aligned_cols=92 Identities=16% Similarity=0.192 Sum_probs=69.2
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+.+++|++|+++-+..+++.+..+- .++++.+++|+++.... ...+.++..+|||||. +-..++|+.++.
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~-p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd------IierGIDIP~v~ 881 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELV-PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT------IIETGIDIPTAN 881 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC-CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc------hhhcccccccCC
Confidence 5589999999998888887777652 25788899999987654 3445667899999995 235789999999
Q ss_pred eEEeccccccCChhHHHHHHhhC
Q 011963 333 LLVVDRLDSLSKGDTLSLIRQSI 355 (474)
Q Consensus 333 ~lViDEad~ll~~~~l~~Il~~l 355 (474)
++|++.+|++. ..++-++....
T Consensus 882 ~VIi~~ad~fg-laq~~Qr~GRv 903 (1147)
T PRK10689 882 TIIIERADHFG-LAQLHQLRGRV 903 (1147)
T ss_pred EEEEecCCCCC-HHHHHHHhhcc
Confidence 99999999764 44454544444
No 241
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.11 E-value=0.41 Score=50.76 Aligned_cols=45 Identities=13% Similarity=0.201 Sum_probs=28.8
Q ss_pred CCcceEEeccccccCC----hhHHHHHHhhC-CCCCcEEEEEccCCccHH
Q 011963 329 SGVSLLVVDRLDSLSK----GDTLSLIRQSI-SGKPHTVVFNDCLTYTSV 373 (474)
Q Consensus 329 ~~l~~lViDEad~ll~----~~~l~~Il~~l-~~~~q~llfSAT~~~~v~ 373 (474)
..+.+|+|||+|.+.. .+.+..++..+ ....|+++.|.+.|..+.
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~ 250 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLK 250 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHh
Confidence 3567899999999876 45555665544 244666665555555443
No 242
>PRK06921 hypothetical protein; Provisional
Probab=94.09 E-value=0.42 Score=47.09 Aligned_cols=47 Identities=13% Similarity=0.122 Sum_probs=27.3
Q ss_pred cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHH
Q 011963 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~ 273 (474)
.+..+++..|+| +|||... ..+...+... .+..++++ +..+|..++.
T Consensus 116 ~~~~l~l~G~~G-~GKThLa-~aia~~l~~~--------~g~~v~y~-~~~~l~~~l~ 162 (266)
T PRK06921 116 RKNSIALLGQPG-SGKTHLL-TAAANELMRK--------KGVPVLYF-PFVEGFGDLK 162 (266)
T ss_pred CCCeEEEECCCC-CcHHHHH-HHHHHHHhhh--------cCceEEEE-EHHHHHHHHH
Confidence 367899999999 9998432 2334334331 14455554 4455555443
No 243
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=94.07 E-value=0.4 Score=52.54 Aligned_cols=76 Identities=17% Similarity=0.265 Sum_probs=59.7
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCc
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l 331 (474)
.+.++||+++|++.|.++++.+... ++.+..++|+.+..+. ...+.++.++|||||- +-...+|+.++
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~---g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd------v~arGIDip~V 326 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH---GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD------VAARGLHIDGV 326 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc---CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh------hhhcCCCccCC
Confidence 3568999999999999999887655 7899999999886554 3445566799999994 23467899999
Q ss_pred ceEEeccc
Q 011963 332 SLLVVDRL 339 (474)
Q Consensus 332 ~~lViDEa 339 (474)
+++|.-+.
T Consensus 327 ~~VInyd~ 334 (572)
T PRK04537 327 KYVYNYDL 334 (572)
T ss_pred CEEEEcCC
Confidence 99886543
No 244
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=94.03 E-value=1 Score=50.20 Aligned_cols=115 Identities=20% Similarity=0.209 Sum_probs=79.6
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCc
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l 331 (474)
.+-++||+++|+..|..+...+... |+.+..++|+.+.... ...+..+.++|+|||- +-..++++..+
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~---gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~------~L~rGfDiP~v 511 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL---GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN------LLREGLDLPEV 511 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh---ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC------hhcCCeeeCCC
Confidence 4679999999999999998887765 7888899998775433 3455667899999992 22478999999
Q ss_pred ceEEeccccccCC---hhHHHHHHhhCC--CCCcEEEEEccCCccHHHHHHH
Q 011963 332 SLLVVDRLDSLSK---GDTLSLIRQSIS--GKPHTVVFNDCLTYTSVPAVQN 378 (474)
Q Consensus 332 ~~lViDEad~ll~---~~~l~~Il~~l~--~~~q~llfSAT~~~~v~~l~~~ 378 (474)
+++|+-++|...- ...+-+++.... .....++|--..+..+...+..
T Consensus 512 ~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 512 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred cEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHHHH
Confidence 9999999887533 333333333332 2344666666666555444443
No 245
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.98 E-value=0.17 Score=46.79 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=27.8
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHH
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~ 273 (474)
-.+.++++..|+| +|||... ..+...+.. .+..+++ +++.+|...+.
T Consensus 45 ~~~~~l~l~G~~G-~GKThLa-~ai~~~~~~---------~g~~v~f-~~~~~L~~~l~ 91 (178)
T PF01695_consen 45 ENGENLILYGPPG-TGKTHLA-VAIANEAIR---------KGYSVLF-ITASDLLDELK 91 (178)
T ss_dssp SC--EEEEEESTT-SSHHHHH-HHHHHHHHH---------TT--EEE-EEHHHHHHHHH
T ss_pred ccCeEEEEEhhHh-HHHHHHH-HHHHHHhcc---------CCcceeE-eecCceecccc
Confidence 4567999999999 9999654 334444444 1434544 56667766554
No 246
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.93 E-value=0.21 Score=45.74 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=30.6
Q ss_pred EEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 220 ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 220 vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
+++.+|+| +|||. +.+-++..... .+..++|++. -+-..++.+.+..+
T Consensus 2 ~li~G~~G-~GKT~-l~~~~~~~~~~---------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPG-TGKTT-FALQFLYAGLA---------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCC-CCHHH-HHHHHHHHHHH---------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 68899999 99995 33333333322 3557777753 45667777766665
No 247
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.92 E-value=0.32 Score=50.89 Aligned_cols=39 Identities=15% Similarity=0.199 Sum_probs=24.4
Q ss_pred cceEEeccccccCC----hhHHHHHHhhC-CCCCcEEEEEccCCc
Q 011963 331 VSLLVVDRLDSLSK----GDTLSLIRQSI-SGKPHTVVFNDCLTY 370 (474)
Q Consensus 331 l~~lViDEad~ll~----~~~l~~Il~~l-~~~~q~llfSAT~~~ 370 (474)
+++|||||+|.+.. ...+-.++..+ ....++++ +++.++
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iii-ts~~~p 243 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVL-TSDRPP 243 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEE-ecCCCH
Confidence 56899999999876 33455555544 34456554 555544
No 248
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=93.91 E-value=0.21 Score=49.65 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=33.4
Q ss_pred CCCCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccC
Q 011963 326 IDVSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCL 368 (474)
Q Consensus 326 ~~l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~ 368 (474)
......+.+||||||.|-. ...+.+.+...+....+++...-+
T Consensus 125 ~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCCh
Confidence 3355578999999999997 888888888877777777665544
No 249
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.90 E-value=1.5 Score=46.40 Aligned_cols=17 Identities=6% Similarity=-0.119 Sum_probs=13.9
Q ss_pred CcEEEEcCCCcchhHHHH
Q 011963 218 KDILETSGSSSTIVQIAW 235 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (474)
.-++++.++| +|||.+.
T Consensus 96 ~vI~lvG~~G-sGKTTta 112 (437)
T PRK00771 96 QTIMLVGLQG-SGKTTTA 112 (437)
T ss_pred eEEEEECCCC-CcHHHHH
Confidence 4678889999 9999654
No 250
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.27 Score=50.68 Aligned_cols=17 Identities=18% Similarity=-0.005 Sum_probs=15.0
Q ss_pred CcEEEEcCCCcchhHHHH
Q 011963 218 KDILETSGSSSTIVQIAW 235 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (474)
|+++...|.| +|||++.
T Consensus 385 RNilfyGPPG-TGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPG-TGKTMFA 401 (630)
T ss_pred hheeeeCCCC-CCchHHH
Confidence 7999999999 9999753
No 251
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.82 E-value=0.86 Score=44.71 Aligned_cols=27 Identities=7% Similarity=-0.155 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCcEEEEcCCCcchhHHHH
Q 011963 208 IEFWKCYSSAKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 208 ~~~i~~~l~g~dvl~~A~TG~SGKTlaf 235 (474)
.+++..+..|+++++..|+| +|||...
T Consensus 12 ~~~l~~l~~g~~vLL~G~~G-tGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAG-TGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCC-CCHHHHH
Confidence 44556677899999999999 9999654
No 252
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=93.77 E-value=0.43 Score=50.25 Aligned_cols=72 Identities=21% Similarity=0.275 Sum_probs=57.7
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
..++||.++|++-|..++..+... ++.+..++|+.+.... ...+..+.++|||||- +-..++|+.++.
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~~---~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd------~~~~GiDip~v~ 315 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRKA---GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD------VAARGIDIDDVS 315 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHhC---CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc------ccccCccCCCCC
Confidence 568999999999999998887664 7899999999886555 3445667899999993 234678999999
Q ss_pred eEEe
Q 011963 333 LLVV 336 (474)
Q Consensus 333 ~lVi 336 (474)
++|.
T Consensus 316 ~VI~ 319 (434)
T PRK11192 316 HVIN 319 (434)
T ss_pred EEEE
Confidence 9884
No 253
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.70 E-value=1.1 Score=41.99 Aligned_cols=50 Identities=8% Similarity=0.180 Sum_probs=33.0
Q ss_pred cceEEeccccccCC----hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhh
Q 011963 331 VSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLL 380 (474)
Q Consensus 331 l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l 380 (474)
.++++||=+-+... ..++..++..+.+..-.+++|||........+..+.
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~ 137 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFY 137 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHH
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHh
Confidence 44666777666554 567777777776656678899999887554455543
No 254
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.52 E-value=0.73 Score=46.44 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=27.1
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccC
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCL 368 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~ 368 (474)
..-++|||||+|.|-+ ...+..++...+....+++ +++-
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il-~~~~ 164 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFII-ATRQ 164 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEE-EeCC
Confidence 4567999999998875 6667777776666565554 4443
No 255
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=93.42 E-value=0.57 Score=50.63 Aligned_cols=70 Identities=17% Similarity=0.331 Sum_probs=55.9
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcce
Q 011963 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSL 333 (474)
Q Consensus 257 ~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~ 333 (474)
.++||.+.|+..|..++..+... |+++..+||+.+.... ...+.++..+|||||- +-.+++++.+|.+
T Consensus 274 ~~~IVF~~tk~~~~~l~~~l~~~---g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTD------vaaRGiDi~~v~~ 344 (513)
T COG0513 274 GRVIVFVRTKRLVEELAESLRKR---GFKVAALHGDLPQEERDRALEKFKDGELRVLVATD------VAARGLDIPDVSH 344 (513)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHC---CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEec------hhhccCCccccce
Confidence 37999999999999987666655 7999999999886544 4455677899999995 2257788888888
Q ss_pred EE
Q 011963 334 LV 335 (474)
Q Consensus 334 lV 335 (474)
+|
T Consensus 345 Vi 346 (513)
T COG0513 345 VI 346 (513)
T ss_pred eE
Confidence 85
No 256
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.38 E-value=0.85 Score=47.21 Aligned_cols=16 Identities=13% Similarity=-0.029 Sum_probs=14.0
Q ss_pred CcEEEEcCCCcchhHHH
Q 011963 218 KDILETSGSSSTIVQIA 234 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (474)
.++++.+|+| +|||..
T Consensus 56 ~~~lI~G~~G-tGKT~l 71 (394)
T PRK00411 56 LNVLIYGPPG-TGKTTT 71 (394)
T ss_pred CeEEEECCCC-CCHHHH
Confidence 4799999999 999964
No 257
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.36 E-value=0.61 Score=49.41 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=26.7
Q ss_pred CcceEEeccccccCC----hhHHHHHHhhCC-CCCcEEEEEccCCccHHH
Q 011963 330 GVSLLVVDRLDSLSK----GDTLSLIRQSIS-GKPHTVVFNDCLTYTSVP 374 (474)
Q Consensus 330 ~l~~lViDEad~ll~----~~~l~~Il~~l~-~~~q~llfSAT~~~~v~~ 374 (474)
..++|+|||+|.+.+ ...+..++..+- ...|+++.|..-|..+..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~ 243 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHH
Confidence 466899999999986 344555555443 345555544444443433
No 258
>PRK11054 helD DNA helicase IV; Provisional
Probab=93.36 E-value=0.31 Score=54.45 Aligned_cols=77 Identities=13% Similarity=0.098 Sum_probs=51.7
Q ss_pred hhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccCC
Q 011963 205 SWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFG 283 (474)
Q Consensus 205 ~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~~ 283 (474)
+-|+.|+- ....+++|.|+.| ||||.+..- -+..++.... ..+-++|+|+.|+..|..+.+.+... ...+
T Consensus 199 ~~Q~~av~--~~~~~~lV~agaG-SGKT~vl~~-r~ayLl~~~~-----~~~~~IL~ltft~~AA~em~eRL~~~lg~~~ 269 (684)
T PRK11054 199 PSQARAVV--NGEDSLLVLAGAG-SGKTSVLVA-RAGWLLARGQ-----AQPEQILLLAFGRQAAEEMDERIRERLGTED 269 (684)
T ss_pred HHHHHHHh--CCCCCeEEEEeCC-CCHHHHHHH-HHHHHHHhCC-----CCHHHeEEEeccHHHHHHHHHHHHHhcCCCC
Confidence 33888874 3345789999999 999976543 3333443211 13458999999999999999887764 3225
Q ss_pred cEEEEEe
Q 011963 284 IHTVSLH 290 (474)
Q Consensus 284 i~v~~~~ 290 (474)
+.+.+++
T Consensus 270 v~v~TFH 276 (684)
T PRK11054 270 ITARTFH 276 (684)
T ss_pred cEEEeHH
Confidence 5555544
No 259
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.32 E-value=0.86 Score=55.71 Aligned_cols=128 Identities=12% Similarity=0.042 Sum_probs=73.7
Q ss_pred chhhHHHHHHHhcC--CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhccc
Q 011963 204 NSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA 281 (474)
Q Consensus 204 ~~~Q~~~i~~~l~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~ 281 (474)
++.|..|+..++.+ +=++++...| +|||... -.++..+..... ..+..++.++||--=|..+.+
T Consensus 969 t~~Q~~Av~~il~s~dr~~~I~G~AG-TGKTT~l-~~v~~~~~~l~~-----~~~~~V~glAPTgrAAk~L~e------- 1034 (1747)
T PRK13709 969 TSGQRAATRMILESTDRFTVVQGYAG-VGKTTQF-RAVMSAVNTLPE-----SERPRVVGLGPTHRAVGEMRS------- 1034 (1747)
T ss_pred CHHHHHHHHHHHhCCCcEEEEEeCCC-CCHHHHH-HHHHHHHHHhhc-----ccCceEEEECCcHHHHHHHHh-------
Confidence 44499999999986 4577888999 9998543 223332221110 135678889999877765442
Q ss_pred CCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhCCC-CCc
Q 011963 282 FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISG-KPH 360 (474)
Q Consensus 282 ~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~-~~q 360 (474)
.|+...+++ +.|.. .+. ....+......-.+|||||+= |++..++..++..++. ..+
T Consensus 1035 ~Gi~A~TI~---------s~L~~--~~~----------~~~~~~~~~~~~~llIVDEaS-Mv~~~~m~~Ll~~~~~~gar 1092 (1747)
T PRK13709 1035 AGVDAQTLA---------SFLHD--TQL----------QQRSGETPDFSNTLFLLDESS-MVGNTDMARAYALIAAGGGR 1092 (1747)
T ss_pred cCcchhhHH---------HHhcc--ccc----------ccccccCCCCCCcEEEEEccc-cccHHHHHHHHHhhhcCCCE
Confidence 244332211 11111 000 000111111234799999995 5557778888887763 678
Q ss_pred EEEEEcc
Q 011963 361 TVVFNDC 367 (474)
Q Consensus 361 ~llfSAT 367 (474)
+|++--+
T Consensus 1093 vVLVGD~ 1099 (1747)
T PRK13709 1093 AVSSGDT 1099 (1747)
T ss_pred EEEecch
Confidence 8877544
No 260
>PLN03025 replication factor C subunit; Provisional
Probab=93.26 E-value=0.84 Score=46.10 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=27.8
Q ss_pred CcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCCc
Q 011963 330 GVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 330 ~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~~ 370 (474)
..+++||||+|.|.. ...+..++...+....++ |+++.+.
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~i-l~~n~~~ 140 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFA-LACNTSS 140 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEE-EEeCCcc
Confidence 468999999999987 667777777655555544 4444433
No 261
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=93.24 E-value=0.75 Score=51.25 Aligned_cols=64 Identities=16% Similarity=0.002 Sum_probs=48.2
Q ss_pred ccccCCCchhhHHHHHHHhcC-----CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHH
Q 011963 197 QDNPLFVNSWGIEFWKCYSSA-----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAK 271 (474)
Q Consensus 197 ~ptpi~~~~~Q~~~i~~~l~g-----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Q 271 (474)
.|++. |..+|..+..+ +..++...+| ||||+... .+... .+..+|||+|+.++|.|
T Consensus 12 ~~~~~-----Q~~ai~~l~~~~~~~~~~~ll~Gl~g-s~ka~lia-----~l~~~--------~~r~vLIVt~~~~~A~~ 72 (652)
T PRK05298 12 KPAGD-----QPQAIEELVEGIEAGEKHQTLLGVTG-SGKTFTMA-----NVIAR--------LQRPTLVLAHNKTLAAQ 72 (652)
T ss_pred CCChH-----HHHHHHHHHHhhhcCCCcEEEEcCCC-cHHHHHHH-----HHHHH--------hCCCEEEEECCHHHHHH
Confidence 46666 99988887544 2567889999 99987643 22221 13368999999999999
Q ss_pred HHHHHHhc
Q 011963 272 VRSVCKPL 279 (474)
Q Consensus 272 i~~~~~~l 279 (474)
+++.+..+
T Consensus 73 l~~dL~~~ 80 (652)
T PRK05298 73 LYSEFKEF 80 (652)
T ss_pred HHHHHHHh
Confidence 99999887
No 262
>PRK08116 hypothetical protein; Validated
Probab=93.22 E-value=0.71 Score=45.54 Aligned_cols=43 Identities=19% Similarity=0.143 Sum_probs=25.5
Q ss_pred CCcceEEeccccc--cCC--hhHHHHHHhhC-CCCCcEEEEEccCCcc
Q 011963 329 SGVSLLVVDRLDS--LSK--GDTLSLIRQSI-SGKPHTVVFNDCLTYT 371 (474)
Q Consensus 329 ~~l~~lViDEad~--ll~--~~~l~~Il~~l-~~~~q~llfSAT~~~~ 371 (474)
.+..+||||+++. .-+ ...+-.|+... ....++|+.|..-+.+
T Consensus 177 ~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~e 224 (268)
T PRK08116 177 VNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEE 224 (268)
T ss_pred cCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHH
Confidence 4567899999954 333 55566666654 3445666655544443
No 263
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.20 E-value=0.18 Score=56.26 Aligned_cols=78 Identities=9% Similarity=0.024 Sum_probs=52.9
Q ss_pred hhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-cc--
Q 011963 205 SWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KA-- 281 (474)
Q Consensus 205 ~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~-- 281 (474)
+-|.+|+.+ ....++|.|+.| ||||.+..--+. +++.... ..+-+.|+|+.|+.-|..+...+..+ ..
T Consensus 5 ~~Q~~av~~--~~g~~lV~AgpG-SGKT~vL~~Ria-~Li~~~~-----v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~~ 75 (672)
T PRK10919 5 PGQQQAVEF--VTGPCLVLAGAG-SGKTRVITNKIA-HLIRGCG-----YQARHIAAVTFTNKAAREMKERVAQTLGRKE 75 (672)
T ss_pred HHHHHHHhC--CCCCEEEEecCC-CCHHHHHHHHHH-HHHHhcC-----CCHHHeeeEechHHHHHHHHHHHHHHhCccc
Confidence 339998865 356889999999 999977544444 3333211 12447899999999999999888775 21
Q ss_pred -CCcEEEEEec
Q 011963 282 -FGIHTVSLHP 291 (474)
Q Consensus 282 -~~i~v~~~~g 291 (474)
.++.+.++|+
T Consensus 76 ~~~v~i~TfHS 86 (672)
T PRK10919 76 ARGLMISTFHT 86 (672)
T ss_pred ccCcEEEcHHH
Confidence 1455555543
No 264
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=93.19 E-value=0.64 Score=48.80 Aligned_cols=73 Identities=11% Similarity=0.170 Sum_probs=56.9
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
..++||.++|+.-|..++..+... |+.+..++|+.+..+.. ..+..+.++|||||- +-..++|+.+++
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~---g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd------v~~rGiDip~v~ 325 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAAD---GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD------VAARGLHIPAVT 325 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC---CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec------hhhcCCCccccC
Confidence 458999999999998888777654 78999999998865543 445667899999994 234678888888
Q ss_pred eEEec
Q 011963 333 LLVVD 337 (474)
Q Consensus 333 ~lViD 337 (474)
++|.-
T Consensus 326 ~VI~~ 330 (423)
T PRK04837 326 HVFNY 330 (423)
T ss_pred EEEEe
Confidence 87754
No 265
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=93.18 E-value=0.33 Score=52.69 Aligned_cols=83 Identities=12% Similarity=-0.041 Sum_probs=60.4
Q ss_pred CccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHH
Q 011963 196 EQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSV 275 (474)
Q Consensus 196 ~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 275 (474)
..|.--.+|.-|..|+.++|...=.|++.|.| +|||..-.- |+-++... ....+||.+|+---+.|+..-
T Consensus 404 s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPG-TGKTvtsa~-IVyhl~~~--------~~~~VLvcApSNiAVDqLaeK 473 (935)
T KOG1802|consen 404 SVPNLPKLNASQSNAVKHVLQRPLSLIQGPPG-TGKTVTSAT-IVYHLARQ--------HAGPVLVCAPSNIAVDQLAEK 473 (935)
T ss_pred cCCCchhhchHHHHHHHHHHcCCceeeecCCC-CCceehhHH-HHHHHHHh--------cCCceEEEcccchhHHHHHHH
Confidence 33333345666999999999999999999999 999987644 44444443 355789999998888887766
Q ss_pred HHhcccCCcEEEEEec
Q 011963 276 CKPLKAFGIHTVSLHP 291 (474)
Q Consensus 276 ~~~l~~~~i~v~~~~g 291 (474)
+... |++|+-+..
T Consensus 474 Ih~t---gLKVvRl~a 486 (935)
T KOG1802|consen 474 IHKT---GLKVVRLCA 486 (935)
T ss_pred HHhc---CceEeeeeh
Confidence 5544 677766553
No 266
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=93.18 E-value=0.35 Score=47.77 Aligned_cols=235 Identities=14% Similarity=0.052 Sum_probs=111.0
Q ss_pred EEEEcCCCcchhHHHH-----------------HHHHHHHHHHhhhhcCCCCCCcEEEEE-eccHHHHHHHHHHHHhccc
Q 011963 220 ILETSGSSSTIVQIAW-----------------IVATAADSIARKEKEGFSFTGPFLLFL-VSSQEKAAKVRSVCKPLKA 281 (474)
Q Consensus 220 vl~~A~TG~SGKTlaf-----------------~lp~l~~l~~~~~~~~~~~~~~~alil-~PtreLa~Qi~~~~~~l~~ 281 (474)
||++.-+| +|||.|. ++|-+-.+.... . ......||+| +-++.....+...+..+..
T Consensus 4 vIiTGlSG-aGKs~Al~~lED~Gy~cvDNlP~~Ll~~l~~~~~~~---~-~~~~~~Ai~iD~R~~~~~~~~~~~~~~l~~ 78 (284)
T PF03668_consen 4 VIITGLSG-AGKSTALRALEDLGYYCVDNLPPSLLPQLIELLAQS---N-SKIEKVAIVIDIRSREFFEDLFEALDELRK 78 (284)
T ss_pred EEEeCCCc-CCHHHHHHHHHhcCeeEEcCCcHHHHHHHHHHHHhc---C-CCCceEEEEEeCCChHHHHHHHHHHHHHHh
Confidence 56777888 9999883 223332232211 1 1124456655 6677777778888888755
Q ss_pred CCcEEEEEecCCCHHHHHHHHhcC-CCcEEEEChHHHHHHHHcCC---CCCCCcceEEeccccccCC--hhHHHHHHhhC
Q 011963 282 FGIHTVSLHPGAAIDHQITGLRSC-EPEFLVSTPERLLKLVSLKA---IDVSGVSLLVVDRLDSLSK--GDTLSLIRQSI 355 (474)
Q Consensus 282 ~~i~v~~~~gg~~~~~q~~~l~~~-~~~IlV~TP~rL~~ll~~~~---~~l~~l~~lViDEad~ll~--~~~l~~Il~~l 355 (474)
.++.+..++=..+.+..+++.+.. .++-+- ..+.+++-+.... -.+....-+|||=-+.-.. ...+..++..-
T Consensus 79 ~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~-~~~~~le~I~~Er~~L~~lr~~Ad~vIDTs~l~~~~Lr~~i~~~~~~~ 157 (284)
T PF03668_consen 79 KGIDVRILFLDASDEVLIRRYSETRRRHPLS-SDGSLLEAIEKERELLEPLRERADLVIDTSNLSVHQLRERIRERFGGD 157 (284)
T ss_pred cCCceEEEEEECChHHHHHHHHhccCCCCCC-CCCCcHHHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHHhccC
Confidence 577776666666655555554321 223221 2233333333211 1133334466665543221 33333333211
Q ss_pred -CCCCcEEEEEccC----CccHHH-HHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHH----HHh
Q 011963 356 -SGKPHTVVFNDCL----TYTSVP-AVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLD----HAY 425 (474)
Q Consensus 356 -~~~~q~llfSAT~----~~~v~~-l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~----~ll 425 (474)
....++.+.|--+ |.+..- +=-++|.||...-..... ......|..++..-+....=+..+..+|. .+.
T Consensus 158 ~~~~l~v~i~SFGfK~GiP~dAD~VfDvRfLpNP~y~~~Lr~l-TG~D~~V~~yv~~~~~~~~f~~~~~~~l~~~lp~y~ 236 (284)
T PF03668_consen 158 KESRLTVTIQSFGFKYGIPPDADLVFDVRFLPNPYYVPELRPL-TGLDKPVQDYVLSDPEAQEFLEKIEDLLDFLLPRYE 236 (284)
T ss_pred CCCceEEEEEEeccccCCCCCCCEEEEcCcCCCCCCChhhhhc-CCCChHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Confidence 1233444444443 332110 111367777622222211 22222344444333322222233333333 333
Q ss_pred hccCCCCCCcEEEE-Ec-----cchhHHHHHHHHhhCCCccc-chH
Q 011963 426 GDHFHSEPLKVLYI-VG-----KDSKFQNLVSTLKCKGYSIS-TGS 464 (474)
Q Consensus 426 ~~~~~~~~~k~LVF-~~-----s~~~a~~l~~~L~~~gi~v~-~~r 464 (474)
+++. ..=+|=+ |. |.--|++|++.|+..|+.+. .+|
T Consensus 237 ~egk---~~ltIaiGCTGG~HRSV~iae~La~~L~~~~~~v~v~HR 279 (284)
T PF03668_consen 237 KEGK---SYLTIAIGCTGGQHRSVAIAERLAERLREKGYTVVVRHR 279 (284)
T ss_pred hcCC---ceEEEEEEcCCCcCcHHHHHHHHHHHHHhcCCcceEEcC
Confidence 3332 2223322 32 66789999999999999887 444
No 267
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.12 E-value=0.7 Score=45.21 Aligned_cols=17 Identities=6% Similarity=-0.122 Sum_probs=14.3
Q ss_pred CcEEEEcCCCcchhHHHH
Q 011963 218 KDILETSGSSSTIVQIAW 235 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (474)
.++++..|+| +|||...
T Consensus 43 ~~vll~GppG-tGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPG-TGKTTVA 59 (261)
T ss_pred ceEEEEcCCC-CCHHHHH
Confidence 4789999999 9999643
No 268
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.11 E-value=0.44 Score=48.46 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=28.4
Q ss_pred cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHH
Q 011963 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS 274 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~ 274 (474)
.+.++++..||| +|||... ..+...+.. .+..+++ .+..+|..++..
T Consensus 182 ~~~~Lll~G~~G-tGKThLa-~aIa~~l~~---------~g~~V~y-~t~~~l~~~l~~ 228 (329)
T PRK06835 182 NNENLLFYGNTG-TGKTFLS-NCIAKELLD---------RGKSVIY-RTADELIEILRE 228 (329)
T ss_pred cCCcEEEECCCC-CcHHHHH-HHHHHHHHH---------CCCeEEE-EEHHHHHHHHHH
Confidence 357999999999 9998522 233433443 2444444 555666555543
No 269
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.94 E-value=2.1 Score=41.62 Aligned_cols=28 Identities=11% Similarity=-0.154 Sum_probs=18.7
Q ss_pred hHHHHHHHh----cCC-cEEEEcCCCcchhHHHH
Q 011963 207 GIEFWKCYS----SAK-DILETSGSSSTIVQIAW 235 (474)
Q Consensus 207 Q~~~i~~~l----~g~-dvl~~A~TG~SGKTlaf 235 (474)
+.+++..+. .+. -++++.|.| +|||...
T Consensus 28 ~~~~~~~l~~~~~~~~~~~~l~G~~G-~GKTtl~ 60 (269)
T TIGR03015 28 HKRAMAYLEYGLSQREGFILITGEVG-AGKTTLI 60 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCC-CCHHHHH
Confidence 455555442 233 588999999 9999643
No 270
>PF05729 NACHT: NACHT domain
Probab=92.90 E-value=0.73 Score=40.77 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=21.8
Q ss_pred EEeccccccCC-hh---------HHHHHHhh-CCCCCcEEEEEcc
Q 011963 334 LVVDRLDSLSK-GD---------TLSLIRQS-ISGKPHTVVFNDC 367 (474)
Q Consensus 334 lViDEad~ll~-~~---------~l~~Il~~-l~~~~q~llfSAT 367 (474)
||||-+|.+.+ .. .+..++.. ++.+.++++.|.+
T Consensus 85 lilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 85 LILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred EEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 99999999987 22 24444444 3556666666554
No 271
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.85 E-value=0.78 Score=46.56 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=26.4
Q ss_pred CCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEE
Q 011963 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (474)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfS 365 (474)
....+.+|||+||.|-. ...+.+++..-|.+.-+++.|
T Consensus 105 ~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t 144 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQA 144 (325)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 34578999999999996 666666666655555455543
No 272
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=92.80 E-value=0.98 Score=45.87 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=27.6
Q ss_pred hhhHHHHHHHh--cCC---cEEEEcCCCcchhHHHHHHHHHHHHHH
Q 011963 205 SWGIEFWKCYS--SAK---DILETSGSSSTIVQIAWIVATAADSIA 245 (474)
Q Consensus 205 ~~Q~~~i~~~l--~g~---dvl~~A~TG~SGKTlaf~lp~l~~l~~ 245 (474)
|||...|..+. .|| -+|+.+|.| .|||... .-+...+..
T Consensus 4 PW~~~~w~~l~~~~~r~~hA~Lf~G~~G-~GK~~la-~~~a~~llC 47 (325)
T PRK08699 4 PWHQEQWRQIAEHWERRPNAWLFAGKKG-IGKTAFA-RFAAQALLC 47 (325)
T ss_pred CccHHHHHHHHHhcCCcceEEEeECCCC-CCHHHHH-HHHHHHHcC
Confidence 67888888876 444 588999999 9998443 334444544
No 273
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=1.4 Score=45.43 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=16.9
Q ss_pred HHHhcC-----CcEEEEcCCCcchhHH
Q 011963 212 KCYSSA-----KDILETSGSSSTIVQI 233 (474)
Q Consensus 212 ~~~l~g-----~dvl~~A~TG~SGKTl 233 (474)
|-+..| +.||...|.| ||||+
T Consensus 235 Pe~F~GirrPWkgvLm~GPPG-TGKTl 260 (491)
T KOG0738|consen 235 PEFFKGIRRPWKGVLMVGPPG-TGKTL 260 (491)
T ss_pred HHHHhhcccccceeeeeCCCC-CcHHH
Confidence 444555 5899999999 99997
No 274
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.74 E-value=1.7 Score=44.37 Aligned_cols=25 Identities=4% Similarity=-0.105 Sum_probs=17.7
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHH
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSI 244 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~ 244 (474)
.++++..|+| +|||.. +--++..+.
T Consensus 41 ~~i~I~G~~G-tGKT~l-~~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTG-TGKTAV-TKYVMKELE 65 (365)
T ss_pred CcEEEECCCC-CCHHHH-HHHHHHHHH
Confidence 4799999999 999954 334444443
No 275
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=92.73 E-value=0.79 Score=51.31 Aligned_cols=41 Identities=5% Similarity=0.054 Sum_probs=27.1
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCCc
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~~ 370 (474)
...+++||||+|.|.. ...|.+++..-+.+..+| |.+|-+.
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FI-LaTtd~~ 160 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFI-LATTDPQ 160 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEE-EEECChh
Confidence 3568999999999986 566666666655544444 4444433
No 276
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.70 E-value=3.3 Score=43.57 Aligned_cols=21 Identities=0% Similarity=-0.315 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCcchhHHHHHH
Q 011963 216 SAKDILETSGSSSTIVQIAWIV 237 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~l 237 (474)
.|.=+.++.||| +|||.....
T Consensus 190 ~g~vi~lvGpnG-~GKTTtlak 210 (420)
T PRK14721 190 QGGVYALIGPTG-VGKTTTTAK 210 (420)
T ss_pred CCcEEEEECCCC-CCHHHHHHH
Confidence 355678889999 999976643
No 277
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=92.69 E-value=5.7 Score=44.15 Aligned_cols=93 Identities=19% Similarity=0.216 Sum_probs=63.6
Q ss_pred CCcEEEEEeccHH--------HHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHc
Q 011963 255 TGPFLLFLVSSQE--------KAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSL 323 (474)
Q Consensus 255 ~~~~alil~Ptre--------La~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~ 323 (474)
.+.+++|++|+.+ -|.++++.+...- .++.+..++|+++.... ...+..+..+|||||. +-.
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~-~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~------vie 519 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF-PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT------VIE 519 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhC-CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc------eee
Confidence 3668999999763 2333444443321 37899999999886544 3445666799999996 234
Q ss_pred CCCCCCCcceEEeccccccCChhHHHHHHhhC
Q 011963 324 KAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI 355 (474)
Q Consensus 324 ~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l 355 (474)
.++|+.++.++|+..+++.. ...+.+.....
T Consensus 520 ~GvDiP~v~~VIi~~~~r~g-ls~lhQ~~GRv 550 (630)
T TIGR00643 520 VGVDVPNATVMVIEDAERFG-LSQLHQLRGRV 550 (630)
T ss_pred cCcccCCCcEEEEeCCCcCC-HHHHHHHhhhc
Confidence 78999999999999998754 44454444444
No 278
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.69 E-value=2.5 Score=41.81 Aligned_cols=18 Identities=11% Similarity=-0.152 Sum_probs=13.8
Q ss_pred CcEEEEcCCCcchhHHHHH
Q 011963 218 KDILETSGSSSTIVQIAWI 236 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~ 236 (474)
+=++++.|+| +|||....
T Consensus 73 ~vi~l~G~~G-~GKTTt~a 90 (272)
T TIGR00064 73 NVILFVGVNG-VGKTTTIA 90 (272)
T ss_pred eEEEEECCCC-CcHHHHHH
Confidence 4567779999 99996543
No 279
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.68 E-value=1.2 Score=43.65 Aligned_cols=50 Identities=8% Similarity=0.176 Sum_probs=33.0
Q ss_pred cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHH
Q 011963 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK 277 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 277 (474)
++.++++..|+| +|||.-.. .+...+.. .| .-++++++.+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G-~GKThLa~-Ai~~~l~~---------~g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPG-VGKTHLAI-AIGNELLK---------AG-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCC-CcHHHHHH-HHHHHHHH---------cC-CeEEEEEHHHHHHHHHHHHh
Confidence 667999999999 99985443 23333332 23 34556688888877766533
No 280
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=92.66 E-value=3.5 Score=45.64 Aligned_cols=138 Identities=8% Similarity=0.008 Sum_probs=75.8
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccCC--------cE
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFG--------IH 285 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~~--------i~ 285 (474)
...+-.++.+|-| .|||.+-.+-++ .+... .+..++|.+|...-+.+++..+..+ ...+ -+
T Consensus 185 fkq~~tV~taPRq-rGKS~iVgi~l~-~La~f--------~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~ 254 (752)
T PHA03333 185 YGKCYTAATVPRR-CGKTTIMAIILA-AMISF--------LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFK 254 (752)
T ss_pred HhhcceEEEeccC-CCcHHHHHHHHH-HHHHh--------cCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCce
Confidence 4456778899999 999977654444 33321 2678999999999999888776664 3211 12
Q ss_pred EEEEecCCC-HHHHH-HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhCC-CCCcEE
Q 011963 286 TVSLHPGAA-IDHQI-TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSIS-GKPHTV 362 (474)
Q Consensus 286 v~~~~gg~~-~~~q~-~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~-~~~q~l 362 (474)
+..+.||.. ..-.. .....++..|+.++-. .+...-....+||||||.-+-+ +.+..|+-.+. ....++
T Consensus 255 iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~-~~l~aIlP~l~~~~~k~I 326 (752)
T PHA03333 255 IVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP-GALLSVLPLMAVKGTKQI 326 (752)
T ss_pred EEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH-HHHHHHHHHHccCCCceE
Confidence 222333311 00000 0000000122222111 1222223468999999998874 55555555554 456677
Q ss_pred EEEccCCc
Q 011963 363 VFNDCLTY 370 (474)
Q Consensus 363 lfSAT~~~ 370 (474)
++|.+.+.
T Consensus 327 iISS~~~~ 334 (752)
T PHA03333 327 HISSPVDA 334 (752)
T ss_pred EEeCCCCc
Confidence 77777644
No 281
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=92.64 E-value=0.49 Score=53.69 Aligned_cols=65 Identities=12% Similarity=0.017 Sum_probs=54.1
Q ss_pred CcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC---hhHHHHHHhhCCCCCcEEEEEccCCcc
Q 011963 307 PEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYT 371 (474)
Q Consensus 307 ~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~ 371 (474)
-.|+++||.-|.-=|-.+.++++.|..|||||||++.+ ...+-++++.-++..-+.+|||.....
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~ 75 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAF 75 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCccc
Confidence 36999999988766667889999999999999999998 666666666667777899999997753
No 282
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.62 E-value=0.99 Score=46.15 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=28.0
Q ss_pred hhhHHHHHHHhc--CC---cEEEEcCCCcchhHHHHHHHHHHHHHHh
Q 011963 205 SWGIEFWKCYSS--AK---DILETSGSSSTIVQIAWIVATAADSIAR 246 (474)
Q Consensus 205 ~~Q~~~i~~~l~--g~---dvl~~A~TG~SGKTlaf~lp~l~~l~~~ 246 (474)
|||...|..+.. |+ -+|+.+|.| .||+... .-+...+...
T Consensus 4 PW~~~~~~~l~~~~~rl~ha~Lf~Gp~G-~GK~~lA-~~~A~~LlC~ 48 (342)
T PRK06964 4 PWQTDDWNRLQALRARLPHALLLHGQAG-IGKLDFA-QHLAQGLLCE 48 (342)
T ss_pred cccHHHHHHHHHhcCCcceEEEEECCCC-CCHHHHH-HHHHHHHcCC
Confidence 678888888754 44 688999999 9998433 4444555553
No 283
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.56 E-value=0.42 Score=57.10 Aligned_cols=116 Identities=8% Similarity=0.034 Sum_probs=73.8
Q ss_pred hHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-cc-CCc
Q 011963 207 GIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KA-FGI 284 (474)
Q Consensus 207 Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~-~~i 284 (474)
|.++|. ..|++++|.|.-| ||||.+..--++..+... ...-+.|+|+=|+.-|..+...+... .. ..-
T Consensus 6 Q~~ai~--~~~~~~lv~A~AG-sGKT~~lv~r~~~~~~~~-------~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~ 75 (1232)
T TIGR02785 6 QWQAIY--TRGQNILVSASAG-SGKTAVLVERIIKKILRG-------VDIDRLLVVTFTNAAAREMKERIEEALQKALQQ 75 (1232)
T ss_pred HHHHHh--CCCCCEEEEecCC-CcHHHHHHHHHHHHHhcC-------CCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc
Confidence 999997 4788999999999 999988766666555432 12236899999999999988877763 22 110
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHH-HHcCCCCCCCc--ceEEeccccc
Q 011963 285 HTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKL-VSLKAIDVSGV--SLLVVDRLDS 341 (474)
Q Consensus 285 ~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~l-l~~~~~~l~~l--~~lViDEad~ 341 (474)
.. .......|... -...-|+|-..++.. ++.... .-+| .|=|.||.+.
T Consensus 76 ~p----~~~~L~~q~~~----~~~~~i~Tihsf~~~~~~~~~~-~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 76 EP----NSKHLRRQLAL----LNTANISTLHSFCLKVIRKHYY-LLDLDPSFRILTDTEQ 126 (1232)
T ss_pred Cc----hhHHHHHHHhh----ccCCeEeeHHHHHHHHHHHhhh-hcCCCCCceeCCHHHH
Confidence 00 11112222222 235779998888754 444322 1222 4667998876
No 284
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.52 E-value=0.85 Score=48.84 Aligned_cols=94 Identities=19% Similarity=0.185 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHH---HHHHHHhcCC
Q 011963 230 IVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAID---HQITGLRSCE 306 (474)
Q Consensus 230 GKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~---~q~~~l~~~~ 306 (474)
|++-.-++.+.+.+... -.|.+||.+-+.|-|.|++.++..+ -+|.+.+++|+.+.. ....+++.+.
T Consensus 369 gse~~K~lA~rq~v~~g--------~~PP~lIfVQs~eRak~L~~~L~~~--~~i~v~vIh~e~~~~qrde~~~~FR~g~ 438 (593)
T KOG0344|consen 369 GSEKGKLLALRQLVASG--------FKPPVLIFVQSKERAKQLFEELEIY--DNINVDVIHGERSQKQRDETMERFRIGK 438 (593)
T ss_pred ecchhHHHHHHHHHhcc--------CCCCeEEEEecHHHHHHHHHHhhhc--cCcceeeEecccchhHHHHHHHHHhccC
Confidence 55555555444444432 4678899999999999999998733 378999999996643 3466777778
Q ss_pred CcEEEEChHHHHHHHHcCCCCCCCcceEEeccc
Q 011963 307 PEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339 (474)
Q Consensus 307 ~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEa 339 (474)
..+|||| ++|.++ ++|.++.++|.+..
T Consensus 439 IwvLicT-----dll~RG-iDf~gvn~VInyD~ 465 (593)
T KOG0344|consen 439 IWVLICT-----DLLARG-IDFKGVNLVINYDF 465 (593)
T ss_pred eeEEEeh-----hhhhcc-ccccCcceEEecCC
Confidence 9999999 455544 99999999999654
No 285
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.50 E-value=0.17 Score=49.47 Aligned_cols=133 Identities=13% Similarity=0.145 Sum_probs=72.2
Q ss_pred cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEec---cHHHHHHHHHHHHhcccCCcEEEEEecCCCH
Q 011963 219 DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS---SQEKAAKVRSVCKPLKAFGIHTVSLHPGAAI 295 (474)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~P---treLa~Qi~~~~~~l~~~~i~v~~~~gg~~~ 295 (474)
=+++.|++| .||| +|++-++.++... .+..++|++. ..+++..+......+ ....+..|.-.
T Consensus 21 L~vi~a~pg-~GKT-~~~l~ia~~~a~~--------~~~~vly~SlEm~~~~l~~R~la~~s~v-----~~~~i~~g~l~ 85 (259)
T PF03796_consen 21 LTVIAARPG-VGKT-AFALQIALNAALN--------GGYPVLYFSLEMSEEELAARLLARLSGV-----PYNKIRSGDLS 85 (259)
T ss_dssp EEEEEESTT-SSHH-HHHHHHHHHHHHT--------TSSEEEEEESSS-HHHHHHHHHHHHHTS-----THHHHHCCGCH
T ss_pred EEEEEeccc-CCch-HHHHHHHHHHHHh--------cCCeEEEEcCCCCHHHHHHHHHHHhhcc-----hhhhhhccccC
Confidence 356778999 9999 6777777766663 2467888873 455555444443333 11111112211
Q ss_pred HHH-------HHHHhcCCCcEEEEC----hHHHHHHHHcCCCCCCCcceEEeccccccCC-------hhHHHHHHhhCC-
Q 011963 296 DHQ-------ITGLRSCEPEFLVST----PERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-------GDTLSLIRQSIS- 356 (474)
Q Consensus 296 ~~q-------~~~l~~~~~~IlV~T----P~rL~~ll~~~~~~l~~l~~lViDEad~ll~-------~~~l~~Il~~l~- 356 (474)
..+ ...+.. .+-++..+ ++.|...+..-......+.++|||=.+.|-. ...+..|...+.
T Consensus 86 ~~e~~~~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~ 164 (259)
T PF03796_consen 86 DEEFERLQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKA 164 (259)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 222 223444 23233444 4455555443222226788999999998865 445555544431
Q ss_pred ----CCCcEEEEEcc
Q 011963 357 ----GKPHTVVFNDC 367 (474)
Q Consensus 357 ----~~~q~llfSAT 367 (474)
.++.++++|..
T Consensus 165 lA~~~~i~vi~~sQl 179 (259)
T PF03796_consen 165 LAKELNIPVIALSQL 179 (259)
T ss_dssp HHHHHTSEEEEEEEB
T ss_pred HHHHcCCeEEEcccc
Confidence 35666666553
No 286
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.43 E-value=0.91 Score=49.75 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=28.7
Q ss_pred CCcceEEeccccccCC----hhHHHHHHhhCC-CCCcEEEEEccCCcc
Q 011963 329 SGVSLLVVDRLDSLSK----GDTLSLIRQSIS-GKPHTVVFNDCLTYT 371 (474)
Q Consensus 329 ~~l~~lViDEad~ll~----~~~l~~Il~~l~-~~~q~llfSAT~~~~ 371 (474)
.++++||||++|.+.. ...+-.|+..+- .+.|+|+.|-..|..
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~e 423 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 423 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHh
Confidence 3467899999999976 455556666553 356777655555443
No 287
>PTZ00110 helicase; Provisional
Probab=92.41 E-value=1 Score=49.02 Aligned_cols=72 Identities=15% Similarity=0.319 Sum_probs=57.0
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+.++||.|+|+.-|..+...+... ++.+..++|+.+..+. ...+..+...|||||- +-..++|+.++.
T Consensus 377 ~~k~LIF~~t~~~a~~l~~~L~~~---g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd------v~~rGIDi~~v~ 447 (545)
T PTZ00110 377 GDKILIFVETKKGADFLTKELRLD---GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD------VASRGLDVKDVK 447 (545)
T ss_pred CCeEEEEecChHHHHHHHHHHHHc---CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc------hhhcCCCcccCC
Confidence 669999999999999888877643 7888999999886554 3455666789999994 225678999999
Q ss_pred eEEe
Q 011963 333 LLVV 336 (474)
Q Consensus 333 ~lVi 336 (474)
++|.
T Consensus 448 ~VI~ 451 (545)
T PTZ00110 448 YVIN 451 (545)
T ss_pred EEEE
Confidence 9886
No 288
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=92.41 E-value=0.28 Score=55.28 Aligned_cols=76 Identities=13% Similarity=0.084 Sum_probs=52.7
Q ss_pred hHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-cc-C-C
Q 011963 207 GIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KA-F-G 283 (474)
Q Consensus 207 Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~-~-~ 283 (474)
|.+++.+ ....++|.|+.| ||||.+-.-=+. +|+.... ..+-..|+|+-|+.-|..+.+.+..+ .. . +
T Consensus 14 Q~~av~~--~~g~~lV~AgaG-SGKT~vl~~Ria-~Li~~~~-----v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~~~~ 84 (721)
T PRK11773 14 QREAVAA--PLGNMLVLAGAG-SGKTRVLVHRIA-WLMQVEN-----ASPYSIMAVTFTNKAAAEMRHRIEQLLGTSQGG 84 (721)
T ss_pred HHHHHhC--CCCCEEEEecCC-CCHHHHHHHHHH-HHHHcCC-----CChhHeEeeeccHHHHHHHHHHHHHHhccCCCC
Confidence 9998864 346899999999 999977543333 3333211 12447899999999999999988886 22 2 4
Q ss_pred cEEEEEec
Q 011963 284 IHTVSLHP 291 (474)
Q Consensus 284 i~v~~~~g 291 (474)
+.+.++|+
T Consensus 85 ~~i~TfHs 92 (721)
T PRK11773 85 MWVGTFHG 92 (721)
T ss_pred CEEEcHHH
Confidence 55655543
No 289
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.41 E-value=1.2 Score=46.80 Aligned_cols=141 Identities=15% Similarity=0.190 Sum_probs=69.1
Q ss_pred HHHHHHhcC----CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe---ccHHHHHHHHHHHHhccc
Q 011963 209 EFWKCYSSA----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV---SSQEKAAKVRSVCKPLKA 281 (474)
Q Consensus 209 ~~i~~~l~g----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~---PtreLa~Qi~~~~~~l~~ 281 (474)
..+..++.| .=+++.|++| +||| +|++-++.++... .+..++|++ |..+|+..+.... .
T Consensus 182 ~~LD~~~~G~~~g~liviag~pg-~GKT-~~al~ia~~~a~~--------~g~~v~~fSlEm~~~~l~~Rl~~~~---~- 247 (421)
T TIGR03600 182 PKLDRLTNGLVKGDLIVIGARPS-MGKT-TLALNIAENVALR--------EGKPVLFFSLEMSAEQLGERLLASK---S- 247 (421)
T ss_pred hhHHHHhcCCCCCceEEEEeCCC-CCHH-HHHHHHHHHHHHh--------CCCcEEEEECCCCHHHHHHHHHHHH---c-
Confidence 445555544 4566778999 9999 6777666555321 244567776 4445543333221 1
Q ss_pred CCcEEEEE-ecCCCHH------HHHHHHhcCCCcEEEE-C----hHHHHHHHHcCCCCCCCcceEEeccccccCC-----
Q 011963 282 FGIHTVSL-HPGAAID------HQITGLRSCEPEFLVS-T----PERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----- 344 (474)
Q Consensus 282 ~~i~v~~~-~gg~~~~------~q~~~l~~~~~~IlV~-T----P~rL~~ll~~~~~~l~~l~~lViDEad~ll~----- 344 (474)
++....+ .|..+.. .....+.. ..+.|. + +..+...+..-.....+++++|||=.+.|..
T Consensus 248 -~v~~~~~~~~~l~~~~~~~~~~~~~~l~~--~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~ 324 (421)
T TIGR03600 248 -GINTGNIRTGRFNDSDFNRLLNAVDRLSE--KDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRD 324 (421)
T ss_pred -CCCHHHHhcCCCCHHHHHHHHHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCC
Confidence 2222112 2222211 11223333 234443 3 3344433332111112578999999988862
Q ss_pred -hhHHHHHHhhC-----CCCCcEEEEEc
Q 011963 345 -GDTLSLIRQSI-----SGKPHTVVFND 366 (474)
Q Consensus 345 -~~~l~~Il~~l-----~~~~q~llfSA 366 (474)
...+..|.+.+ ..++.++++|-
T Consensus 325 ~~~~~~~i~~~Lk~lAke~~i~Vi~lsQ 352 (421)
T TIGR03600 325 RNEELGGISRGLKALAKELDVPVVLLAQ 352 (421)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEecc
Confidence 33444444443 13566666654
No 290
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.40 E-value=0.49 Score=48.38 Aligned_cols=50 Identities=8% Similarity=-0.030 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHH
Q 011963 208 IEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (474)
Q Consensus 208 ~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa 269 (474)
....-++..+.+++++.||| ||||. ++-.++..+. ..-+.+.|-.+.||.
T Consensus 153 ~~l~~~v~~~~nilI~G~tG-SGKTT-ll~aLl~~i~----------~~~rivtiEd~~El~ 202 (344)
T PRK13851 153 AFLHACVVGRLTMLLCGPTG-SGKTT-MSKTLISAIP----------PQERLITIEDTLELV 202 (344)
T ss_pred HHHHHHHHcCCeEEEECCCC-ccHHH-HHHHHHcccC----------CCCCEEEECCCcccc
Confidence 33444556678999999999 99994 4333332221 234677788888874
No 291
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=92.29 E-value=0.23 Score=55.89 Aligned_cols=75 Identities=13% Similarity=0.085 Sum_probs=52.4
Q ss_pred hHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhccc--C-C
Q 011963 207 GIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA--F-G 283 (474)
Q Consensus 207 Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~--~-~ 283 (474)
|.+++.+ ....++|.|..| ||||-+-.-= +.+|+.... ...-..|+|+.|+.-|..+...+..+-+ . +
T Consensus 9 Q~~av~~--~~g~~lV~AgaG-SGKT~~L~~R-ia~Li~~~~-----v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~~~~ 79 (715)
T TIGR01075 9 QREAVAA--PPGNLLVLAGAG-SGKTRVLTHR-IAWLLSVEN-----ASPHSIMAVTFTNKAAAEMRHRIGALLGTSARG 79 (715)
T ss_pred HHHHHcC--CCCCEEEEecCC-CCHHHHHHHH-HHHHHHcCC-----CCHHHeEeeeccHHHHHHHHHHHHHHhcccccC
Confidence 9998864 356899999999 9999775333 334443211 1345789999999999999998888622 2 4
Q ss_pred cEEEEEe
Q 011963 284 IHTVSLH 290 (474)
Q Consensus 284 i~v~~~~ 290 (474)
+.+.+++
T Consensus 80 ~~i~TfH 86 (715)
T TIGR01075 80 MWIGTFH 86 (715)
T ss_pred cEEEcHH
Confidence 5555544
No 292
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.28 E-value=1.5 Score=45.37 Aligned_cols=139 Identities=14% Similarity=0.142 Sum_probs=67.2
Q ss_pred HHHhcCC---cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCC-CCCCcEEEEEeccHHHHHHHHHHHHhc---ccCCc
Q 011963 212 KCYSSAK---DILETSGSSSTIVQIAWIVATAADSIARKEKEGF-SFTGPFLLFLVSSQEKAAKVRSVCKPL---KAFGI 284 (474)
Q Consensus 212 ~~~l~g~---dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~-~~~~~~alil~PtreLa~Qi~~~~~~l---~~~~i 284 (474)
..+.+|+ -+|+..|.| +||+. +..-+...++........ ....+..+-+++.- ..|+.+ .+-++
T Consensus 33 ~~~~~~rl~HA~Lf~Gp~G-~GK~~-lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c-------~~c~~i~~~~HPDl 103 (365)
T PRK07471 33 DAYRSGRLHHAWLIGGPQG-IGKAT-LAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH-------PVARRIAAGAHGGL 103 (365)
T ss_pred HHHHcCCCCceEEEECCCC-CCHHH-HHHHHHHHHhCCCCCCCCccccccccccCCCCC-------hHHHHHHccCCCCe
Confidence 3345554 489999999 99984 344555666654311110 00112334444432 233333 22244
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEE
Q 011963 285 HTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTV 362 (474)
Q Consensus 285 ~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~l 362 (474)
..+.-...... ... ...|.|-.--.+.+.+... .....-+.+||||+|.|-. ...+..++...+..+.+|
T Consensus 104 ~~i~~~~~~~~----~~~---~~~I~VdqiR~l~~~~~~~-~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~I 175 (365)
T PRK07471 104 LTLERSWNEKG----KRL---RTVITVDEVRELISFFGLT-AAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFL 175 (365)
T ss_pred EEEeccccccc----ccc---cccccHHHHHHHHHHhCcC-cccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 44332110000 000 1234333333333333332 2235678999999999975 556666666555555555
Q ss_pred EEEcc
Q 011963 363 VFNDC 367 (474)
Q Consensus 363 lfSAT 367 (474)
++|..
T Consensus 176 L~t~~ 180 (365)
T PRK07471 176 LVSHA 180 (365)
T ss_pred EEECC
Confidence 54433
No 293
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=92.28 E-value=1 Score=56.17 Aligned_cols=122 Identities=11% Similarity=0.029 Sum_probs=69.0
Q ss_pred hhhHHHHHHHhcCC--cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccC
Q 011963 205 SWGIEFWKCYSSAK--DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF 282 (474)
Q Consensus 205 ~~Q~~~i~~~l~g~--dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~ 282 (474)
+.|..|+..++.+. -+++..+.| +|||... -.++..+...-.. .+..++.++||-.-|.++.+ .
T Consensus 1022 ~~Q~~Ai~~il~~~~~~~~i~G~AG-tGKTt~l-~~~~~~i~~~~~~-----~g~~v~glApT~~Aa~~L~~-------~ 1087 (1960)
T TIGR02760 1022 HGQKQAIHLIISTKDRFVAVQGLAG-VGKTTML-ESRYKPVLQAFES-----EQLQVIGLAPTHEAVGELKS-------A 1087 (1960)
T ss_pred HHHHHHHHHHHhCCCcEEEEEeCCC-CCHHHhH-HHHHHHHHHHHHh-----cCCeEEEEeChHHHHHHHHh-------c
Confidence 44999999998774 467779999 9999544 1222222221111 36688889999776665542 2
Q ss_pred CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhC-CCCCcE
Q 011963 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI-SGKPHT 361 (474)
Q Consensus 283 ~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l-~~~~q~ 361 (474)
|+...++. ..|.. ... ......+....+||||||= |++..+|..++..+ ....++
T Consensus 1088 g~~a~Ti~---------s~l~~--~~~------------~~~~~~~~~~~v~ivDEas-Mv~~~~~~~l~~~~~~~~ak~ 1143 (1960)
T TIGR02760 1088 GVQAQTLD---------SFLTD--ISL------------YRNSGGDFRNTLFILDESS-MVSNFQLTHATELVQKSGSRA 1143 (1960)
T ss_pred CCchHhHH---------HHhcC--ccc------------ccccCCCCcccEEEEEccc-cccHHHHHHHHHhccCCCCEE
Confidence 44322111 11110 000 0011124456899999995 44577777777665 344566
Q ss_pred EEE
Q 011963 362 VVF 364 (474)
Q Consensus 362 llf 364 (474)
|++
T Consensus 1144 vlv 1146 (1960)
T TIGR02760 1144 VSL 1146 (1960)
T ss_pred EEe
Confidence 665
No 294
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.16 E-value=1.2 Score=41.10 Aligned_cols=39 Identities=8% Similarity=0.176 Sum_probs=24.5
Q ss_pred CCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEcc
Q 011963 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDC 367 (474)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT 367 (474)
...-+++||||+|.|.. ...+...+...+... .++|.++
T Consensus 94 ~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~-~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNT-LFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCe-EEEEEEC
Confidence 35678999999999986 455555555534333 4444443
No 295
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=92.10 E-value=3.7 Score=47.84 Aligned_cols=144 Identities=15% Similarity=0.142 Sum_probs=102.4
Q ss_pred hHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHH--hhhhc---------------------CCCCCCcEEEEEe
Q 011963 207 GIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIA--RKEKE---------------------GFSFTGPFLLFLV 263 (474)
Q Consensus 207 Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~--~~~~~---------------------~~~~~~~~alil~ 263 (474)
|.+.|..+-..-|||--+.|- -=.||-..+.-+..+.- .++.. ..-.+|.++.||.
T Consensus 732 ~KEkLK~Lr~~VDvLTLSATP-IPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~ 810 (1139)
T COG1197 732 HKEKLKELRANVDVLTLSATP-IPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVH 810 (1139)
T ss_pred HHHHHHHHhccCcEEEeeCCC-CcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEe
Confidence 666666666666777766666 66666655544443322 11000 0113588999999
Q ss_pred ccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHH---HHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 264 SSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQIT---GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 264 PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~---~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
|.-+=..++...++.|-+ ..+++..||-+......+ ...++.+||||||. +-..++|+.+...|||+-||
T Consensus 811 NrV~~Ie~~~~~L~~LVP-EarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT------IIEtGIDIPnANTiIIe~AD 883 (1139)
T COG1197 811 NRVESIEKKAERLRELVP-EARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT------IIETGIDIPNANTIIIERAD 883 (1139)
T ss_pred cchhhHHHHHHHHHHhCC-ceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee------eeecCcCCCCCceEEEeccc
Confidence 988888888888888733 578999999998766544 33456899999996 44578999999999999999
Q ss_pred ccCChhHHHHHHhhCCCCC
Q 011963 341 SLSKGDTLSLIRQSISGKP 359 (474)
Q Consensus 341 ~ll~~~~l~~Il~~l~~~~ 359 (474)
+|. ..++-++........
T Consensus 884 ~fG-LsQLyQLRGRVGRS~ 901 (1139)
T COG1197 884 KFG-LAQLYQLRGRVGRSN 901 (1139)
T ss_pred ccc-HHHHHHhccccCCcc
Confidence 998 778888877776433
No 296
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=92.10 E-value=2.3 Score=39.69 Aligned_cols=103 Identities=11% Similarity=0.087 Sum_probs=62.3
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHH
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDH 297 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~ 297 (474)
+=.++++|.. ||||.. +|..+..... .+.++++..|--. ..++...+.-.-|..
T Consensus 5 ~l~~i~gpM~-SGKT~e----Ll~r~~~~~~------~g~~v~vfkp~iD------------~R~~~~~V~Sr~G~~--- 58 (201)
T COG1435 5 WLEFIYGPMF-SGKTEE----LLRRARRYKE------AGMKVLVFKPAID------------TRYGVGKVSSRIGLS--- 58 (201)
T ss_pred EEEEEEccCc-CcchHH----HHHHHHHHHH------cCCeEEEEecccc------------cccccceeeeccCCc---
Confidence 3357889999 999973 3333333221 3668888888200 111222222222221
Q ss_pred HHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC--hhHHHHHHhhC
Q 011963 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GDTLSLIRQSI 355 (474)
Q Consensus 298 q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~--~~~l~~Il~~l 355 (474)
-+-++|-.+..+.+.+.....++. +.++.||||+-+-+ ...+..|...+
T Consensus 59 --------~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~~~~~v~~l~~lad~l 109 (201)
T COG1435 59 --------SEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFFDEELVYVLNELADRL 109 (201)
T ss_pred --------ccceecCChHHHHHHHHhcccCCC-cCEEEEehhHhCCHHHHHHHHHHHhhc
Confidence 245788888888888876544433 88999999987765 66666666554
No 297
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.06 E-value=1.6 Score=46.76 Aligned_cols=150 Identities=13% Similarity=0.110 Sum_probs=87.9
Q ss_pred ccccCCCchhhHHHHHHHh------cC----CcEEEEcCCCcchhHHHHH-HHHHHHHHHhhhhcCCCCCCcEEEEEecc
Q 011963 197 QDNPLFVNSWGIEFWKCYS------SA----KDILETSGSSSTIVQIAWI-VATAADSIARKEKEGFSFTGPFLLFLVSS 265 (474)
Q Consensus 197 ~ptpi~~~~~Q~~~i~~~l------~g----~dvl~~A~TG~SGKTlaf~-lp~l~~l~~~~~~~~~~~~~~~alil~Pt 265 (474)
.-+|.-+.|||.-.+-.+. .| +..++..|-+ -|||.... |.....+.... .+-...|++|+
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~Rk-ngKt~l~A~i~~~~~l~~~~-------~~~~~~i~A~s 127 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRK-NGKSTLAAGIMMTALLLNWR-------SGAGIYILAPS 127 (546)
T ss_pred CCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecC-CchHHHHHHHHHHHHHhhhh-------cCCcEEEEecc
Confidence 4456666889999988776 12 3678888888 79975433 33333333331 46688999999
Q ss_pred HHHHHHHHHHHHhc-ccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHc--CCCCCCCcceEEeccccc
Q 011963 266 QEKAAKVRSVCKPL-KAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL--KAIDVSGVSLLVVDRLDS 341 (474)
Q Consensus 266 reLa~Qi~~~~~~l-~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~--~~~~l~~l~~lViDEad~ 341 (474)
.+-+.+.+..++.+ ... +++..+-+ ......|...--...+..+.. +..+=.+-.+.|+||.|.
T Consensus 128 ~~qa~~~F~~ar~mv~~~~~l~~~~~~------------q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~ 195 (546)
T COG4626 128 VEQAANSFNPARDMVKRDDDLRDLCNV------------QTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHL 195 (546)
T ss_pred HHHHHHhhHHHHHHHHhCcchhhhhcc------------ccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhh
Confidence 99999999988886 221 11111000 000011111111112222222 334555677999999999
Q ss_pred cCC-hhHHHHHHhhCC--CCCcEEEEEc
Q 011963 342 LSK-GDTLSLIRQSIS--GKPHTVVFND 366 (474)
Q Consensus 342 ll~-~~~l~~Il~~l~--~~~q~llfSA 366 (474)
..+ .+.+..+...+. ++.+++..|-
T Consensus 196 f~~~~~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 196 FGKQEDMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred hcCHHHHHHHHHhhhccCcCceEEEEec
Confidence 988 477777777665 4455555544
No 298
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.05 E-value=0.77 Score=49.10 Aligned_cols=73 Identities=18% Similarity=0.272 Sum_probs=58.5
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHH---hcCCCcEEEEChHHHHHHHHcCCCCCCCc
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGL---RSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l---~~~~~~IlV~TP~rL~~ll~~~~~~l~~l 331 (474)
.+.++||.|-|+.-|.++...++.. ++.+.++||+.+..+....| +.+.+.|||||- +..+++|+.+|
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~---~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd------VAaRGLDi~dV 410 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRK---GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD------VAARGLDVPDV 410 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhc---CcceeeecccccHHHHHHHHHhcccCCcceEEEcc------cccccCCCccc
Confidence 4679999999999999988877765 58899999999876654444 467799999995 34578888888
Q ss_pred ceEEe
Q 011963 332 SLLVV 336 (474)
Q Consensus 332 ~~lVi 336 (474)
+++|-
T Consensus 411 ~lVIn 415 (519)
T KOG0331|consen 411 DLVIN 415 (519)
T ss_pred cEEEe
Confidence 88874
No 299
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.04 E-value=1.9 Score=41.39 Aligned_cols=52 Identities=17% Similarity=0.061 Sum_probs=30.7
Q ss_pred cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
.|.-+++..|+| +|||.. ++-++..+.. ++..+++++ +-+-..++.+.+..+
T Consensus 23 ~g~~~~i~G~~G-~GKTtl-~~~~~~~~~~---------~g~~~~yi~-~e~~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDES-TGKSIL-SQRLAYGFLQ---------NGYSVSYVS-TQLTTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCC-CCHHHH-HHHHHHHHHh---------CCCcEEEEe-CCCCHHHHHHHHHHh
Confidence 456788999999 999954 2333333332 245678887 443344555544443
No 300
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=91.96 E-value=0.38 Score=53.64 Aligned_cols=77 Identities=9% Similarity=-0.016 Sum_probs=52.4
Q ss_pred hhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-cc--
Q 011963 205 SWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KA-- 281 (474)
Q Consensus 205 ~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~-- 281 (474)
+-|.+++.+ .+.+++|.|+.| ||||.+-+--+...+.... ......|+|+.|+.-|.++...+..+ ..
T Consensus 4 ~~Q~~av~~--~~~~~~V~Ag~G-SGKT~~L~~ri~~ll~~~~------~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~~ 74 (664)
T TIGR01074 4 PQQQEAVEY--VTGPCLVLAGAG-SGKTRVITNKIAYLIQNCG------YKARNIAAVTFTNKAAREMKERVAKTLGKGE 74 (664)
T ss_pred HHHHHHHhC--CCCCEEEEecCC-CCHHHHHHHHHHHHHHhcC------CCHHHeEEEeccHHHHHHHHHHHHHHhCccc
Confidence 348888754 356899999999 9999765444443332211 12447899999999999999888764 22
Q ss_pred -CCcEEEEEe
Q 011963 282 -FGIHTVSLH 290 (474)
Q Consensus 282 -~~i~v~~~~ 290 (474)
.++.+.+++
T Consensus 75 ~~~v~v~TfH 84 (664)
T TIGR01074 75 ARGLTISTFH 84 (664)
T ss_pred cCCeEEEeHH
Confidence 245565544
No 301
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=91.94 E-value=1.2 Score=47.45 Aligned_cols=72 Identities=15% Similarity=0.281 Sum_probs=56.2
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
..++||.++|++-+..++..+... ++.+..++|+.+.... ...+.++..+|||||- +-..++|+.+|.
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~---g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd------v~~rGiDip~v~ 315 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKD---GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD------IAARGLDIEELP 315 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHC---CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc------HHhcCCCcccCC
Confidence 558999999999999888777554 7899999999886544 3445666799999994 223678999999
Q ss_pred eEEe
Q 011963 333 LLVV 336 (474)
Q Consensus 333 ~lVi 336 (474)
++|.
T Consensus 316 ~VI~ 319 (456)
T PRK10590 316 HVVN 319 (456)
T ss_pred EEEE
Confidence 8874
No 302
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=91.94 E-value=1.2 Score=47.38 Aligned_cols=75 Identities=13% Similarity=0.226 Sum_probs=58.2
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
...+||.++|++-+..++..+... ++.+..++|+.+...+. ..+.++..+|||||- +-..++++.++.
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~---~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd------v~~rGiDi~~v~ 312 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQ---GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD------VAARGLDIKALE 312 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec------ccccccchhcCC
Confidence 447999999999999988877654 78999999998866543 344566799999993 234678899999
Q ss_pred eEEeccc
Q 011963 333 LLVVDRL 339 (474)
Q Consensus 333 ~lViDEa 339 (474)
++|.-+.
T Consensus 313 ~VI~~d~ 319 (460)
T PRK11776 313 AVINYEL 319 (460)
T ss_pred eEEEecC
Confidence 8886443
No 303
>PRK06904 replicative DNA helicase; Validated
Probab=91.94 E-value=0.89 Score=48.63 Aligned_cols=141 Identities=13% Similarity=0.168 Sum_probs=69.0
Q ss_pred HHHHHHhcC---Cc-EEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe---ccHHHHHHHHHHHHhccc
Q 011963 209 EFWKCYSSA---KD-ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV---SSQEKAAKVRSVCKPLKA 281 (474)
Q Consensus 209 ~~i~~~l~g---~d-vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~---PtreLa~Qi~~~~~~l~~ 281 (474)
..+..+..| .+ +++.|.+| .||| +|.+-++..+... .+..++|++ |..+|+..+-... +
T Consensus 209 ~~LD~~t~Gl~~G~LiiIaarPg-~GKT-afalnia~~~a~~--------~g~~Vl~fSlEMs~~ql~~Rlla~~---s- 274 (472)
T PRK06904 209 TDLDKKTAGLQPSDLIIVAARPS-MGKT-TFAMNLCENAAMA--------SEKPVLVFSLEMPAEQIMMRMLASL---S- 274 (472)
T ss_pred HHHHHHHhccCCCcEEEEEeCCC-CChH-HHHHHHHHHHHHh--------cCCeEEEEeccCCHHHHHHHHHHhh---C-
Confidence 444555444 35 45567899 9999 5777776655432 133566665 4444433332222 2
Q ss_pred CCcEEEEE-ec-CCCHHH------HHHHHhcCCCcEEE-----EChHHHHHHHHcCCCCCCCcceEEeccccccCC----
Q 011963 282 FGIHTVSL-HP-GAAIDH------QITGLRSCEPEFLV-----STPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---- 344 (474)
Q Consensus 282 ~~i~v~~~-~g-g~~~~~------q~~~l~~~~~~IlV-----~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~---- 344 (474)
++....+ .| ..+... -...+.. .+.+.| .|+..+...+..-......++++|||-.+.|-.
T Consensus 275 -~v~~~~i~~g~~l~~~e~~~~~~a~~~l~~-~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~ 352 (472)
T PRK06904 275 -RVDQTKIRTGQNLDQQDWAKISSTVGMFKQ-KPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFE 352 (472)
T ss_pred -CCCHHHhccCCCCCHHHHHHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCC
Confidence 2222112 22 122111 1223333 344555 245454433322101112578999999988752
Q ss_pred ---hhHHHHHHhhC---C--CCCcEEEEE
Q 011963 345 ---GDTLSLIRQSI---S--GKPHTVVFN 365 (474)
Q Consensus 345 ---~~~l~~Il~~l---~--~~~q~llfS 365 (474)
..++..|.+.+ . -++.++++|
T Consensus 353 ~~r~~ei~~isr~LK~lAkel~ipVi~ls 381 (472)
T PRK06904 353 DNRTLEIAEISRSLKALAKELKVPVVALS 381 (472)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 23455554444 2 367777776
No 304
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.92 E-value=2.1 Score=40.68 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=27.9
Q ss_pred CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
|.-+++.+|+| +|||.-. +-++..... .+-.+++++- -+.+.++.+.+..+
T Consensus 20 G~~~~i~G~~G-~GKT~l~-~~~~~~~~~---------~g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 20 GFFVAVTGEPG-TGKTIFC-LHFAYKGLR---------DGDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CeEEEEECCCC-CChHHHH-HHHHHHHHh---------cCCeEEEEEc-cCCHHHHHHHHHHh
Confidence 45788899999 9998432 222222222 1335666653 33444555444443
No 305
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.91 E-value=4.9 Score=42.32 Aligned_cols=86 Identities=9% Similarity=-0.081 Sum_probs=42.1
Q ss_pred cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe--ccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCH
Q 011963 219 DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV--SSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAI 295 (474)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~--PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~ 295 (474)
-++++.++| +|||....--+ ..+.. .+.++++++ |.|.-|. .+++.+ ...++.+.....+.+.
T Consensus 102 vi~lvG~~G-vGKTTtaaKLA-~~l~~---------~G~kV~lV~~D~~R~aA~---eQLk~~a~~~~vp~~~~~~~~dp 167 (429)
T TIGR01425 102 VIMFVGLQG-SGKTTTCTKLA-YYYQR---------KGFKPCLVCADTFRAGAF---DQLKQNATKARIPFYGSYTESDP 167 (429)
T ss_pred EEEEECCCC-CCHHHHHHHHH-HHHHH---------CCCCEEEEcCcccchhHH---HHHHHHhhccCCeEEeecCCCCH
Confidence 467888999 99985432211 12222 233555553 3343332 333333 2236666655544332
Q ss_pred -H---HHHHHHhcCCCc-EEEEChHHHH
Q 011963 296 -D---HQITGLRSCEPE-FLVSTPERLL 318 (474)
Q Consensus 296 -~---~q~~~l~~~~~~-IlV~TP~rL~ 318 (474)
. +....+...++| |||=||||+.
T Consensus 168 ~~i~~~~l~~~~~~~~DvViIDTaGr~~ 195 (429)
T TIGR01425 168 VKIASEGVEKFKKENFDIIIVDTSGRHK 195 (429)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence 1 123333322455 6677888763
No 306
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=91.87 E-value=1.8 Score=47.74 Aligned_cols=137 Identities=10% Similarity=0.042 Sum_probs=84.4
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-cc-C-CcEEEEEec
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KA-F-GIHTVSLHP 291 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~-~-~i~v~~~~g 291 (474)
...+-.++..|-- .|||+... |++..+...- .+..+++.+|.+.-+..+++.+... .. + +-.+..+.|
T Consensus 252 fkqk~tVflVPRR-~GKTwivv-~iI~~ll~s~-------~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG 322 (738)
T PHA03368 252 FRQRATVFLVPRR-HGKTWFLV-PLIALALATF-------RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG 322 (738)
T ss_pred hhccceEEEeccc-CCchhhHH-HHHHHHHHhC-------CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC
Confidence 3456778888888 89997555 7776555431 4889999999999999999988875 21 1 111212222
Q ss_pred CCCHHHHHHHHhcCC-CcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhCC-CCCcEEEEEccCC
Q 011963 292 GAAIDHQITGLRSCE-PEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSIS-GKPHTVVFNDCLT 369 (474)
Q Consensus 292 g~~~~~q~~~l~~~~-~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~-~~~q~llfSAT~~ 369 (474)
..+ .-.+.+++ .-|..+|- -..+.+.=....+||||||+-+-+ +.+..|+-.+. .++++|+.|.|-+
T Consensus 323 -e~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~-~al~~ilp~l~~~n~k~I~ISS~Ns 391 (738)
T PHA03368 323 -ETI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP-DAVQTIMGFLNQTNCKIIFVSSTNT 391 (738)
T ss_pred -cEE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH-HHHHHHHHHHhccCccEEEEecCCC
Confidence 111 00112211 24555432 011223334688999999998874 44555554443 5899999999977
Q ss_pred cc
Q 011963 370 YT 371 (474)
Q Consensus 370 ~~ 371 (474)
.+
T Consensus 392 ~~ 393 (738)
T PHA03368 392 GK 393 (738)
T ss_pred Cc
Confidence 64
No 307
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=91.78 E-value=1.6 Score=49.93 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=28.6
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCC
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLT 369 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~ 369 (474)
...+++||||+|+|.. ...|..++...+....+|+.+ |-+
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t-t~~ 160 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT-TEP 160 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe-CCh
Confidence 4578999999999997 666777777766655555543 433
No 308
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.76 E-value=0.095 Score=54.39 Aligned_cols=48 Identities=8% Similarity=0.057 Sum_probs=38.0
Q ss_pred cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 219 DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
++++++||| ||||.+|++|.+-. ....+||+=|--|+........+.+
T Consensus 1 H~lv~g~tG-sGKt~~~viP~ll~------------~~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTR-SGKGVGFVIPNLLT------------WPGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCC-CCCccEEEccchhc------------CCCCEEEEccchhHHHHHHHHHHHc
Confidence 578999999 99999999998732 1337888999999998777665544
No 309
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.74 E-value=13 Score=39.10 Aligned_cols=50 Identities=10% Similarity=0.261 Sum_probs=30.3
Q ss_pred CcceEEeccccccCC----hhHHHHHHhhCC---CCCcEEEEEccCCcc-HHHHHHHh
Q 011963 330 GVSLLVVDRLDSLSK----GDTLSLIRQSIS---GKPHTVVFNDCLTYT-SVPAVQNL 379 (474)
Q Consensus 330 ~l~~lViDEad~ll~----~~~l~~Il~~l~---~~~q~llfSAT~~~~-v~~l~~~~ 379 (474)
+.+++|||=+-++.. .+.+..++.... +.--++++|||.... +.+.+..|
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 456788887766543 445555555442 223467889998874 55555555
No 310
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.73 E-value=0.7 Score=47.44 Aligned_cols=41 Identities=5% Similarity=0.182 Sum_probs=28.8
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCCc
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~~ 370 (474)
..-+.+||||||.|-. ...+..++...+.+..++++| +-+.
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit-~~~~ 182 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS-HSSG 182 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE-CChh
Confidence 4678999999999986 666777776655556556654 4343
No 311
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.73 E-value=1.2 Score=43.93 Aligned_cols=45 Identities=11% Similarity=0.156 Sum_probs=30.0
Q ss_pred HHHhCCCCccccCCCchhhHHHHHHHhc-C-CcEEEEcCCCcchhHHHHHHHHHHHH
Q 011963 189 AMRHDGVEQDNPLFVNSWGIEFWKCYSS-A-KDILETSGSSSTIVQIAWIVATAADS 243 (474)
Q Consensus 189 ~l~~~g~~~ptpi~~~~~Q~~~i~~~l~-g-~dvl~~A~TG~SGKTlaf~lp~l~~l 243 (474)
.|.+.||... |.+.|..++. . .-++++.||| ||||- ++-.++..+
T Consensus 58 ~l~~lg~~~~--------~~~~l~~~~~~~~GlilisG~tG-SGKTT-~l~all~~i 104 (264)
T cd01129 58 DLEKLGLKPE--------NLEIFRKLLEKPHGIILVTGPTG-SGKTT-TLYSALSEL 104 (264)
T ss_pred CHHHcCCCHH--------HHHHHHHHHhcCCCEEEEECCCC-CcHHH-HHHHHHhhh
Confidence 3556787555 7777766654 3 3588999999 99994 334455444
No 312
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=91.70 E-value=0.65 Score=44.56 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=32.4
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCCc
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~~ 370 (474)
.+-+.+|+||||.|-+ +..+++.+...++.+++.+.-.+...
T Consensus 112 grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~K 155 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEK 155 (333)
T ss_pred CceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhh
Confidence 5678999999999999 88888888877776776665554433
No 313
>CHL00181 cbbX CbbX; Provisional
Probab=91.68 E-value=1.6 Score=43.58 Aligned_cols=18 Identities=11% Similarity=-0.152 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCcchhHHHH
Q 011963 217 AKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (474)
|.++++..|+| +|||...
T Consensus 59 ~~~ill~G~pG-tGKT~lA 76 (287)
T CHL00181 59 GLHMSFTGSPG-TGKTTVA 76 (287)
T ss_pred CceEEEECCCC-CCHHHHH
Confidence 55789999999 9999654
No 314
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=91.66 E-value=12 Score=42.03 Aligned_cols=92 Identities=17% Similarity=0.236 Sum_probs=62.5
Q ss_pred CCcEEEEEeccHH--------HHHHHHHHHHhcccC-CcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHH
Q 011963 255 TGPFLLFLVSSQE--------KAAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVS 322 (474)
Q Consensus 255 ~~~~alil~Ptre--------La~Qi~~~~~~l~~~-~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~ 322 (474)
.+-+++|++|+.+ -+..+++.+... + ++++..++|+++..+.. ..+.++..+|||||. +-
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~--~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~------vi 541 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEA--FPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT------VI 541 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHH--CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc------ce
Confidence 3668999999643 233344443332 2 58999999998865543 345666789999995 22
Q ss_pred cCCCCCCCcceEEeccccccCChhHHHHHHhhC
Q 011963 323 LKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI 355 (474)
Q Consensus 323 ~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l 355 (474)
..++|+.++.++|+..+++.. ..++.+.....
T Consensus 542 e~GiDip~v~~VIi~~~~r~g-ls~lhQ~~GRv 573 (681)
T PRK10917 542 EVGVDVPNATVMVIENAERFG-LAQLHQLRGRV 573 (681)
T ss_pred eeCcccCCCcEEEEeCCCCCC-HHHHHHHhhcc
Confidence 478999999999999998754 34444444444
No 315
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.63 E-value=1.3 Score=48.67 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=27.3
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCCc
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~~ 370 (474)
..-+++||||+|.|.. ...|..++...|...-+|+.+ |-+.
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~t-te~~ 159 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFAT-TEPE 159 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEe-CChH
Confidence 4678999999999986 666666666555544444433 5443
No 316
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.61 E-value=4.1 Score=36.87 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=26.2
Q ss_pred CcceEEeccccccCC----hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhh
Q 011963 330 GVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLL 380 (474)
Q Consensus 330 ~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l 380 (474)
+..++|||....+.. ...+..+........-+++++|..+....+.+..+.
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~ 136 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFN 136 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHH
Confidence 345677777766532 333333333333444566677765554545555543
No 317
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.59 E-value=2.8 Score=41.77 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=26.1
Q ss_pred CcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEE
Q 011963 330 GVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (474)
Q Consensus 330 ~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfS 365 (474)
..++|||||+|.+.. ...+..++...+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEe
Confidence 467999999999976 566777777666666555543
No 318
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.57 E-value=2.1 Score=47.41 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=26.9
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCCcc
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTYT 371 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~~~ 371 (474)
..-+.+||||+|+|.. ...+.+++..-|....+|+ ..|-+..
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL-~Tt~~~k 161 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL-ATTDPQK 161 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEE-ecCCccc
Confidence 4568999999999985 6666666665444444444 3554443
No 319
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.55 E-value=5.5 Score=43.10 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=33.1
Q ss_pred ChHHHHHHHHcCCCCCCCcceEEeccccccCC----hhHHHHHHhhCCCCCcEEEEEccCCc-cHHHHHHHh
Q 011963 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTY-TSVPAVQNL 379 (474)
Q Consensus 313 TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~llfSAT~~~-~v~~l~~~~ 379 (474)
+++.|...+.. +.+.++|+||.+=+.-. ..++..|... ....-+++++++... .+...++.|
T Consensus 415 d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~Dl~eii~~f 481 (559)
T PRK12727 415 SAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFSDLDEVVRRF 481 (559)
T ss_pred cHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChhHHHHHHHHH
Confidence 34445555542 23467888888876543 2233333332 233457777888653 345555554
No 320
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.53 E-value=1 Score=45.84 Aligned_cols=38 Identities=8% Similarity=0.073 Sum_probs=25.7
Q ss_pred CCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEE
Q 011963 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (474)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfS 365 (474)
...-+.+|||+||+|-. ...+.+++..=|.+.-+++.|
T Consensus 106 ~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t 145 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLAC 145 (334)
T ss_pred cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEE
Confidence 35678999999999996 555556655544444444444
No 321
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.45 E-value=0.18 Score=53.68 Aligned_cols=49 Identities=10% Similarity=0.111 Sum_probs=38.6
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
.+++++|||| ||||.+|++|.+ +.. .+ -+||.-|-.||.......++..
T Consensus 45 ~h~lvig~tg-SGKt~~~viP~l---l~~--------~~-s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTG-SGKTTSFVIPNL---LNY--------PG-SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCC-CCccceeeHhHH---Hhc--------cC-CEEEEECCCcHHHHHHHHHHHC
Confidence 4799999999 999999999987 221 12 6788889999988777766555
No 322
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=91.36 E-value=2 Score=39.00 Aligned_cols=50 Identities=8% Similarity=0.059 Sum_probs=38.8
Q ss_pred CCCcceEEeccccccCC-----hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHH
Q 011963 328 VSGVSLLVVDRLDSLSK-----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQ 377 (474)
Q Consensus 328 l~~l~~lViDEad~ll~-----~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~ 377 (474)
....++||+||+=..+. .+++..+++.-|...-+|+.+-..|+++.+.|.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 34578999999988766 778888888888877788887787776666554
No 323
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.33 E-value=0.99 Score=45.09 Aligned_cols=43 Identities=12% Similarity=0.207 Sum_probs=29.4
Q ss_pred CCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCCcc
Q 011963 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTYT 371 (474)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~~~ 371 (474)
....++++|||||.|.. ...+..++..-+.+..+++.+ .-+..
T Consensus 107 ~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~-n~~~~ 151 (325)
T COG0470 107 EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT-NDPSK 151 (325)
T ss_pred CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc-CChhh
Confidence 46789999999999986 666666666655555555544 34433
No 324
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.27 E-value=1.9 Score=47.68 Aligned_cols=37 Identities=5% Similarity=0.100 Sum_probs=25.0
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEE
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfS 365 (474)
.+.+++||||+|+|.. ...|.+++..-+.++.+|+.|
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEe
Confidence 4568999999999985 555555555545556555544
No 325
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.24 E-value=1.5 Score=43.52 Aligned_cols=18 Identities=11% Similarity=-0.151 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCcchhHHHH
Q 011963 217 AKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (474)
+.++++..|+| ||||...
T Consensus 58 ~~~vll~G~pG-TGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPG-TGKTTVA 75 (284)
T ss_pred CceEEEEcCCC-CCHHHHH
Confidence 45899999999 9999654
No 326
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=91.08 E-value=0.8 Score=48.56 Aligned_cols=72 Identities=24% Similarity=0.438 Sum_probs=56.8
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHH---HHhcCCCcEEEEChHHHHHHHHcCCCCCCCc
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQIT---GLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~---~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l 331 (474)
..|.+||.+.|..=|.-+...+.++ |++++.++||-+.++... .++.+..+|+|||- +...+++..+|
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~---g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD------vAgRGIDIpnV 586 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKA---GYKVTTLHGGKSQEQRENALADFREGTGDILVATD------VAGRGIDIPNV 586 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhc---cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec------ccccCCCCCcc
Confidence 4788999999999888777777766 799999999988665543 44555789999995 33467888888
Q ss_pred ceEE
Q 011963 332 SLLV 335 (474)
Q Consensus 332 ~~lV 335 (474)
.++|
T Consensus 587 SlVi 590 (673)
T KOG0333|consen 587 SLVI 590 (673)
T ss_pred ceee
Confidence 8876
No 327
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.07 E-value=2.4 Score=44.98 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=32.1
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
.-+++..++| +|||. +++-++..+.. .+-.++|++ +.|-..|+...+..+
T Consensus 81 s~~lI~G~pG-~GKTt-L~lq~a~~~a~---------~g~~vlYvs-~Ees~~qi~~ra~rl 130 (446)
T PRK11823 81 SVVLIGGDPG-IGKST-LLLQVAARLAA---------AGGKVLYVS-GEESASQIKLRAERL 130 (446)
T ss_pred EEEEEECCCC-CCHHH-HHHHHHHHHHh---------cCCeEEEEE-ccccHHHHHHHHHHc
Confidence 3568889999 99994 44444433332 244778776 455667777666665
No 328
>PF13173 AAA_14: AAA domain
Probab=91.06 E-value=2 Score=36.94 Aligned_cols=37 Identities=14% Similarity=0.288 Sum_probs=27.2
Q ss_pred CcceEEeccccccCC-hhHHHHHHhhCCCCCcEEEEEcc
Q 011963 330 GVSLLVVDRLDSLSK-GDTLSLIRQSISGKPHTVVFNDC 367 (474)
Q Consensus 330 ~l~~lViDEad~ll~-~~~l~~Il~~l~~~~q~llfSAT 367 (474)
.-.+|+|||+|.+-+ ...+..+...- .+.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhc-cCceEEEEccc
Confidence 456899999999988 78888887754 45666654443
No 329
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=91.05 E-value=1.6 Score=46.55 Aligned_cols=73 Identities=16% Similarity=0.277 Sum_probs=56.9
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
..++||.+++++-|..++..+... ++.+..++|+.+..+. ...+..+...|||||- +-..++|+.+++
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~------~l~~GIDi~~v~ 405 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKD---GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD------VAGRGIHIDGIS 405 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc---CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc------ccccCCcccCCC
Confidence 458999999999999888777544 7888899999886655 4455566799999993 224678899999
Q ss_pred eEEec
Q 011963 333 LLVVD 337 (474)
Q Consensus 333 ~lViD 337 (474)
++|.-
T Consensus 406 ~VI~~ 410 (475)
T PRK01297 406 HVINF 410 (475)
T ss_pred EEEEe
Confidence 88863
No 330
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.05 E-value=1.1 Score=47.94 Aligned_cols=76 Identities=21% Similarity=0.247 Sum_probs=59.4
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCc
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l 331 (474)
.+..+||.++|+.-+.++...+... |+.+..++|+.+..... ..+..+.++|||||-- -..++|+.++
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~---g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~------~~~GID~p~V 295 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNL---GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVA------FGMGINKPDV 295 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhc---CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEech------hhccCCcccc
Confidence 3557899999999999998887655 88999999998866543 3445668999999952 2468899999
Q ss_pred ceEEeccc
Q 011963 332 SLLVVDRL 339 (474)
Q Consensus 332 ~~lViDEa 339 (474)
+++|.-..
T Consensus 296 ~~VI~~~~ 303 (470)
T TIGR00614 296 RFVIHYSL 303 (470)
T ss_pred eEEEEeCC
Confidence 99996544
No 331
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.02 E-value=0.81 Score=44.87 Aligned_cols=44 Identities=9% Similarity=0.025 Sum_probs=28.4
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHH
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa 269 (474)
..+..+++++||| ||||- ++-.++..+... .-++++|-.+.|+-
T Consensus 125 ~~~~~ili~G~tG-SGKTT-~l~all~~i~~~---------~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 125 RGRGNILISGPTG-SGKTT-LLNALLEEIPPE---------DERIVTIEDPPELR 168 (270)
T ss_dssp HTTEEEEEEESTT-SSHHH-HHHHHHHHCHTT---------TSEEEEEESSS-S-
T ss_pred ccceEEEEECCCc-cccch-HHHHHhhhcccc---------ccceEEecccccee
Confidence 3456999999999 99994 444444433331 24778887777763
No 332
>PRK07004 replicative DNA helicase; Provisional
Probab=90.91 E-value=0.88 Score=48.50 Aligned_cols=142 Identities=13% Similarity=0.138 Sum_probs=70.6
Q ss_pred HHHHHHhcC----CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe---ccHHHHHHHHHHHHhccc
Q 011963 209 EFWKCYSSA----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV---SSQEKAAKVRSVCKPLKA 281 (474)
Q Consensus 209 ~~i~~~l~g----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~---PtreLa~Qi~~~~~~l~~ 281 (474)
..+..+..| .=+++.|.+| +||| +|++-++.++... .+..++|++ |..+|+..+......+..
T Consensus 201 ~~LD~~t~G~~~g~liviaarpg-~GKT-~~al~ia~~~a~~--------~~~~v~~fSlEM~~~ql~~R~la~~~~v~~ 270 (460)
T PRK07004 201 VDLDRMTSGMHGGELIIVAGRPS-MGKT-AFSMNIGEYVAVE--------YGLPVAVFSMEMPGTQLAMRMLGSVGRLDQ 270 (460)
T ss_pred HHhcccccCCCCCceEEEEeCCC-CCcc-HHHHHHHHHHHHH--------cCCeEEEEeCCCCHHHHHHHHHHhhcCCCH
Confidence 344444444 3466678999 9999 6777666555432 133555654 555555444322221111
Q ss_pred CCcEEEEEecCCCHH------HHHHHHhcCCCcEEE-E----ChHHHHHHHHcCCCCCCCcceEEeccccccCC------
Q 011963 282 FGIHTVSLHPGAAID------HQITGLRSCEPEFLV-S----TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK------ 344 (474)
Q Consensus 282 ~~i~v~~~~gg~~~~------~q~~~l~~~~~~IlV-~----TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~------ 344 (474)
..++ .|..+.. .....+.. ..|.| - |+..+.....+-......+.++|||=.+.|..
T Consensus 271 ~~i~----~g~l~~~e~~~~~~a~~~l~~--~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~ 344 (460)
T PRK07004 271 HRMR----TGRLTDEDWPKLTHAVQKMSE--AQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGEN 344 (460)
T ss_pred HHHh----cCCCCHHHHHHHHHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCc
Confidence 1121 1222211 11233443 33544 3 34444332222111123478999999988863
Q ss_pred -hhHHHHHHhhCC-----CCCcEEEEEc
Q 011963 345 -GDTLSLIRQSIS-----GKPHTVVFND 366 (474)
Q Consensus 345 -~~~l~~Il~~l~-----~~~q~llfSA 366 (474)
..++..|.+.+. -++.++++|-
T Consensus 345 r~~ei~~Isr~LK~lAkel~ipVi~lsQ 372 (460)
T PRK07004 345 RATEISEISRSLKSLAKELDVPVIALSQ 372 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 334555555552 4677777764
No 333
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.85 E-value=2 Score=46.33 Aligned_cols=37 Identities=11% Similarity=0.113 Sum_probs=26.0
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEE
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfS 365 (474)
.+-+++||||+|.|.. ...+..++...|....+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 3468999999999986 666666666656665555543
No 334
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.73 E-value=1.4 Score=50.38 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=28.4
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCCccH
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTYTS 372 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~~~v 372 (474)
...+++||||||+|.. ...|.+++..-|....+|+ ..|-+..+
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL-aTTe~~kL 162 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL-ATTDPQKL 162 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE-ECCCchhc
Confidence 3567999999999985 6666666665555555554 35554443
No 335
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=90.69 E-value=1.2 Score=49.35 Aligned_cols=78 Identities=22% Similarity=0.291 Sum_probs=61.5
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEec--------CCCHHHHHHHH---hcCCCcEEEEChHHHHHHHHc
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHP--------GAAIDHQITGL---RSCEPEFLVSTPERLLKLVSL 323 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~g--------g~~~~~q~~~l---~~~~~~IlV~TP~rL~~ll~~ 323 (474)
...++||.+-||+.|..+..++..+...|++...++| |++...|...| +.|..+|||||. +-.
T Consensus 412 ~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATS------V~E 485 (746)
T KOG0354|consen 412 PDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATS------VAE 485 (746)
T ss_pred CCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEec------chh
Confidence 5779999999999999999999987666888888877 45556665544 567899999995 445
Q ss_pred CCCCCCCcceEEecc
Q 011963 324 KAIDVSGVSLLVVDR 338 (474)
Q Consensus 324 ~~~~l~~l~~lViDE 338 (474)
.++|...+.++|.=+
T Consensus 486 EGLDI~ec~lVIcYd 500 (746)
T KOG0354|consen 486 EGLDIGECNLVICYD 500 (746)
T ss_pred ccCCcccccEEEEec
Confidence 778888888777643
No 336
>PTZ00424 helicase 45; Provisional
Probab=90.61 E-value=2.2 Score=44.19 Aligned_cols=72 Identities=17% Similarity=0.201 Sum_probs=55.8
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
..++||.++|++-+..+...+... ++.+..++|+.+...+. ..+.++..+|||||- +-..++|+.++.
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~---~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~------~l~~GiDip~v~ 337 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHER---DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD------LLARGIDVQQVS 337 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHC---CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc------cccCCcCcccCC
Confidence 457899999999988877766544 78899999998866543 345667799999994 224678898999
Q ss_pred eEEe
Q 011963 333 LLVV 336 (474)
Q Consensus 333 ~lVi 336 (474)
++|.
T Consensus 338 ~VI~ 341 (401)
T PTZ00424 338 LVIN 341 (401)
T ss_pred EEEE
Confidence 8885
No 337
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=90.59 E-value=0.23 Score=54.50 Aligned_cols=56 Identities=5% Similarity=-0.061 Sum_probs=43.6
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEE
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSL 289 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~ 289 (474)
.+++++|||| ||||..|++|.+-.. +.-+||+=|-.|+........+.+ |.+|.++
T Consensus 159 ~hvLviapTg-SGKg~g~VIPnLL~~------------~~S~VV~DpKGEl~~~Ta~~R~~~---G~~V~vf 214 (606)
T PRK13897 159 QHALLFAPTG-SGKGVGFVIPNLLFW------------EDSVVVHDIKLENYELTSGWREKQ---GQKVFVW 214 (606)
T ss_pred ceEEEEcCCC-CCcceEEehhhHHhC------------CCCEEEEeCcHHHHHHHHHHHHHC---CCeEEEE
Confidence 4899999999 999999999998432 236888999999998887776665 5455443
No 338
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=90.44 E-value=2.1 Score=43.28 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=26.4
Q ss_pred CCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEc
Q 011963 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFND 366 (474)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSA 366 (474)
....+.+|||+||+|-. ...+.+++..-|.+.-+|+.|.
T Consensus 106 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~ 146 (319)
T PRK06090 106 LNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTH 146 (319)
T ss_pred cCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 45678999999999986 5566666665455444444433
No 339
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.37 E-value=4.9 Score=39.35 Aligned_cols=52 Identities=17% Similarity=0.109 Sum_probs=29.5
Q ss_pred CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe---ccHHHHHHHHHHHHhc
Q 011963 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV---SSQEKAAKVRSVCKPL 279 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~---PtreLa~Qi~~~~~~l 279 (474)
|.=+++.+|+| +|||. |.+-++..... .+-.++|++ |...+..++...+..+
T Consensus 36 gs~~lI~G~pG-tGKT~-l~~qf~~~~a~---------~Ge~vlyis~Ee~~~~~~~~l~~~a~~~ 90 (259)
T TIGR03878 36 YSVINITGVSD-TGKSL-MVEQFAVTQAS---------RGNPVLFVTVESPANFVYTSLKERAKAM 90 (259)
T ss_pred CcEEEEEcCCC-CCHHH-HHHHHHHHHHh---------CCCcEEEEEecCCchHHHHHHHHHHHHc
Confidence 45788899999 99995 43333322221 245777776 3344444444443433
No 340
>PRK08006 replicative DNA helicase; Provisional
Probab=90.32 E-value=1.7 Score=46.53 Aligned_cols=142 Identities=11% Similarity=0.118 Sum_probs=70.6
Q ss_pred HHHHHHhcC---Cc-EEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe---ccHHHHHHHHHHHHhccc
Q 011963 209 EFWKCYSSA---KD-ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV---SSQEKAAKVRSVCKPLKA 281 (474)
Q Consensus 209 ~~i~~~l~g---~d-vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~---PtreLa~Qi~~~~~~l~~ 281 (474)
..+..+..| .+ +++.|.+| .||| +|++-++.++... .+..++|++ |..+|+..+......+..
T Consensus 212 ~~LD~~~~Gl~~G~LiiIaarPg-mGKT-afalnia~~~a~~--------~g~~V~~fSlEM~~~ql~~Rlla~~~~v~~ 281 (471)
T PRK08006 212 DDLNKKTAGLQPSDLIIVAARPS-MGKT-TFAMNLCENAAML--------QDKPVLIFSLEMPGEQIMMRMLASLSRVDQ 281 (471)
T ss_pred HHHHHhhcCCCCCcEEEEEeCCC-CCHH-HHHHHHHHHHHHh--------cCCeEEEEeccCCHHHHHHHHHHHhcCCCH
Confidence 445555545 34 45567999 9999 7877777665432 133556664 444444333322222211
Q ss_pred CCcEEEEEecCCCHHH------HHHHHhcCCCcEEEE-----ChHHHHHHHHcCCCCCCCcceEEeccccccCC------
Q 011963 282 FGIHTVSLHPGAAIDH------QITGLRSCEPEFLVS-----TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK------ 344 (474)
Q Consensus 282 ~~i~v~~~~gg~~~~~------q~~~l~~~~~~IlV~-----TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~------ 344 (474)
..++ .|..+... ....+.. ...+.|- |+..+...++.-......++++|||=.+.|-.
T Consensus 282 ~~i~----~~~l~~~e~~~~~~a~~~~~~-~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~ 356 (471)
T PRK08006 282 TRIR----TGQLDDEDWARISGTMGILLE-KRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDN 356 (471)
T ss_pred HHhh----cCCCCHHHHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCC
Confidence 1222 22222221 1122312 2334443 44444443322111113578999999998752
Q ss_pred -hhHHHHHHhhCC-----CCCcEEEEE
Q 011963 345 -GDTLSLIRQSIS-----GKPHTVVFN 365 (474)
Q Consensus 345 -~~~l~~Il~~l~-----~~~q~llfS 365 (474)
..++..|.+.|. -++.++++|
T Consensus 357 r~~ei~~isr~LK~lAkel~ipVi~Ls 383 (471)
T PRK08006 357 RTLEIAEISRSLKALAKELQVPVVALS 383 (471)
T ss_pred cHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 334555555542 457778776
No 341
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=90.24 E-value=2 Score=47.65 Aligned_cols=72 Identities=18% Similarity=0.280 Sum_probs=56.7
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
...+||.|+|+.-+.+++..|... |+.+..++|+.+.... ...+..+.++|||||- +-..++++.+|.
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~---g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATd------v~arGIDip~V~ 315 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERN---GYNSAALNGDMNQALREQTLERLKDGRLDILIATD------VAARGLDVERIS 315 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhC---CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcc------hHhcCCCcccCC
Confidence 357999999999999988877654 7889999999886554 3455667899999994 224668899999
Q ss_pred eEEe
Q 011963 333 LLVV 336 (474)
Q Consensus 333 ~lVi 336 (474)
++|.
T Consensus 316 ~VI~ 319 (629)
T PRK11634 316 LVVN 319 (629)
T ss_pred EEEE
Confidence 9875
No 342
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=90.17 E-value=7.4 Score=40.47 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=49.7
Q ss_pred CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccC-CcEEEEEecCCCH
Q 011963 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAI 295 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~-~i~v~~~~gg~~~ 295 (474)
++-+....||| -|||...+=-+....+... ..--+||-.-|--.+. ..+++.++.. |+.+..++.....
T Consensus 203 ~~vi~LVGPTG-VGKTTTlAKLAar~~~~~~-------~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~vv~~~~el 272 (407)
T COG1419 203 KRVIALVGPTG-VGKTTTLAKLAARYVMLKK-------KKKVAIITTDTYRIGA--VEQLKTYADIMGVPLEVVYSPKEL 272 (407)
T ss_pred CcEEEEECCCC-CcHHHHHHHHHHHHHhhcc-------CcceEEEEeccchhhH--HHHHHHHHHHhCCceEEecCHHHH
Confidence 67889999999 9999765332222221111 2335677666655532 1233333222 6666666666666
Q ss_pred HHHHHHHhcCCCcEEEEChHH
Q 011963 296 DHQITGLRSCEPEFLVSTPER 316 (474)
Q Consensus 296 ~~q~~~l~~~~~~IlV~TP~r 316 (474)
...+..+..+ =.|||=|-||
T Consensus 273 ~~ai~~l~~~-d~ILVDTaGr 292 (407)
T COG1419 273 AEAIEALRDC-DVILVDTAGR 292 (407)
T ss_pred HHHHHHhhcC-CEEEEeCCCC
Confidence 6666666652 2355666554
No 343
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=90.10 E-value=0.092 Score=45.88 Aligned_cols=14 Identities=14% Similarity=-0.023 Sum_probs=12.5
Q ss_pred cEEEEcCCCcchhHH
Q 011963 219 DILETSGSSSTIVQI 233 (474)
Q Consensus 219 dvl~~A~TG~SGKTl 233 (474)
+||+..|+| +|||.
T Consensus 1 ~vlL~G~~G-~GKt~ 14 (139)
T PF07728_consen 1 PVLLVGPPG-TGKTT 14 (139)
T ss_dssp EEEEEESSS-SSHHH
T ss_pred CEEEECCCC-CCHHH
Confidence 589999999 99985
No 344
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=90.08 E-value=3.7 Score=44.91 Aligned_cols=42 Identities=10% Similarity=0.080 Sum_probs=25.0
Q ss_pred CCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCCc
Q 011963 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~~ 370 (474)
...-+++||||+|.|.. ...+..++...|... +++|.+|-+.
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~-ifIlatt~~~ 160 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHV-IFILATTEPH 160 (559)
T ss_pred cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCe-EEEEEeCChh
Confidence 34567999999999875 444444444433333 4444455443
No 345
>PRK10867 signal recognition particle protein; Provisional
Probab=90.07 E-value=5.4 Score=42.18 Aligned_cols=155 Identities=13% Similarity=0.119 Sum_probs=72.0
Q ss_pred cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe--ccHHHH-HHHHHHHHhcccCCcEEEEEecCCCH
Q 011963 219 DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV--SSQEKA-AKVRSVCKPLKAFGIHTVSLHPGAAI 295 (474)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~--PtreLa-~Qi~~~~~~l~~~~i~v~~~~gg~~~ 295 (474)
=++++.++| +|||....- +...+... .+..++++. +.|.-| .|...+... .++.+.....+.+.
T Consensus 102 vI~~vG~~G-sGKTTtaak-LA~~l~~~--------~G~kV~lV~~D~~R~aa~eQL~~~a~~---~gv~v~~~~~~~dp 168 (433)
T PRK10867 102 VIMMVGLQG-AGKTTTAGK-LAKYLKKK--------KKKKVLLVAADVYRPAAIEQLKTLGEQ---IGVPVFPSGDGQDP 168 (433)
T ss_pred EEEEECCCC-CcHHHHHHH-HHHHHHHh--------cCCcEEEEEccccchHHHHHHHHHHhh---cCCeEEecCCCCCH
Confidence 467889999 999965432 22233321 133444443 333333 244333333 36666544323232
Q ss_pred HHHH----HHHhcCCCc-EEEEChHHHH---HHHHc-----CCCCCCCcceEEeccccccCC---hhHHHHHHhhCCCCC
Q 011963 296 DHQI----TGLRSCEPE-FLVSTPERLL---KLVSL-----KAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKP 359 (474)
Q Consensus 296 ~~q~----~~l~~~~~~-IlV~TP~rL~---~ll~~-----~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~ 359 (474)
.... ......++| |||=||||+. .++.. ..+....+ +||+|- +.. ......+...++ .
T Consensus 169 ~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~ev-llVlda---~~gq~av~~a~~F~~~~~--i 242 (433)
T PRK10867 169 VDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEI-LLVVDA---MTGQDAVNTAKAFNEALG--L 242 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeE-EEEEec---ccHHHHHHHHHHHHhhCC--C
Confidence 2211 122222565 7789999873 23322 22333444 889984 222 233333333332 2
Q ss_pred cEEEEEcc---CCccHHHHHHHhhcCCceEEEccCC
Q 011963 360 HTVVFNDC---LTYTSVPAVQNLLLGSINRLSLNQS 392 (474)
Q Consensus 360 q~llfSAT---~~~~v~~l~~~~l~~p~~~v~v~~~ 392 (474)
--+++|-. ...-..--+....+-|+.++.++..
T Consensus 243 ~giIlTKlD~~~rgG~alsi~~~~~~PI~fig~Ge~ 278 (433)
T PRK10867 243 TGVILTKLDGDARGGAALSIRAVTGKPIKFIGTGEK 278 (433)
T ss_pred CEEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCc
Confidence 23444321 1111223334455678767777653
No 346
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.02 E-value=11 Score=42.74 Aligned_cols=20 Identities=0% Similarity=-0.266 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCcchhHHHHHH
Q 011963 217 AKDILETSGSSSTIVQIAWIV 237 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~l 237 (474)
|+=++++.||| +|||.+...
T Consensus 185 g~Vi~lVGpnG-vGKTTTiaK 204 (767)
T PRK14723 185 GGVLALVGPTG-VGKTTTTAK 204 (767)
T ss_pred CeEEEEECCCC-CcHHHHHHH
Confidence 44577889999 999877654
No 347
>PRK08506 replicative DNA helicase; Provisional
Probab=89.92 E-value=1.5 Score=46.95 Aligned_cols=142 Identities=13% Similarity=0.100 Sum_probs=70.2
Q ss_pred hHHHHHHHhcC----CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe---ccHHHHHHHHHHHHhc
Q 011963 207 GIEFWKCYSSA----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV---SSQEKAAKVRSVCKPL 279 (474)
Q Consensus 207 Q~~~i~~~l~g----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~---PtreLa~Qi~~~~~~l 279 (474)
.-..+..+..| .=+++.|++| .||| +|++-++.++.. .+..++|++ |..+|+..+... .
T Consensus 178 G~~~LD~~~~G~~~G~LivIaarpg-~GKT-~fal~ia~~~~~---------~g~~V~~fSlEMs~~ql~~Rlla~---~ 243 (472)
T PRK08506 178 GFVELNKMTKGFNKGDLIIIAARPS-MGKT-TLCLNMALKALN---------QDKGVAFFSLEMPAEQLMLRMLSA---K 243 (472)
T ss_pred ChHHHHhhcCCCCCCceEEEEcCCC-CChH-HHHHHHHHHHHh---------cCCcEEEEeCcCCHHHHHHHHHHH---h
Confidence 33455555554 3456678999 9999 777777766543 233556664 333443332221 1
Q ss_pred ccCCcEEEEE-ecCCCHH------HHHHHHhcCCCcEEE-E----ChHHHHHHHHcCCCCCCCcceEEeccccccCC---
Q 011963 280 KAFGIHTVSL-HPGAAID------HQITGLRSCEPEFLV-S----TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--- 344 (474)
Q Consensus 280 ~~~~i~v~~~-~gg~~~~------~q~~~l~~~~~~IlV-~----TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~--- 344 (474)
. ++....+ .|..+.. .....+.. .+ +.| - |+..+...++.-.....++.++|||=.+.|-.
T Consensus 244 s--~v~~~~i~~~~l~~~e~~~~~~a~~~l~~-~~-l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~ 319 (472)
T PRK08506 244 T--SIPLQNLRTGDLDDDEWERLSDACDELSK-KK-LFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGN 319 (472)
T ss_pred c--CCCHHHHhcCCCCHHHHHHHHHHHHHHHc-CC-eEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCC
Confidence 1 2221111 1222211 11233444 23 443 2 44445443332111123578999999987753
Q ss_pred ----hhHHHHHHhhC---C--CCCcEEEEEc
Q 011963 345 ----GDTLSLIRQSI---S--GKPHTVVFND 366 (474)
Q Consensus 345 ----~~~l~~Il~~l---~--~~~q~llfSA 366 (474)
..++..|.+.+ . -++.++++|-
T Consensus 320 ~~~r~~ev~~isr~LK~lAkel~ipVi~lsQ 350 (472)
T PRK08506 320 FKDRHLQISEISRGLKLLARELDIPIIALSQ 350 (472)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCcEEEEee
Confidence 33455554444 2 3677777763
No 348
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.85 E-value=2 Score=44.28 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=23.6
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEE
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVF 364 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llf 364 (474)
..-+++||||+|.|.. ...+...+...|....+++.
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILA 155 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 4567999999999985 44555555554555544443
No 349
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=89.83 E-value=4.1 Score=42.09 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=23.7
Q ss_pred cceEEeccccccCC--hhHHHHHHhhCCC-CCcEEEEEcc
Q 011963 331 VSLLVVDRLDSLSK--GDTLSLIRQSISG-KPHTVVFNDC 367 (474)
Q Consensus 331 l~~lViDEad~ll~--~~~l~~Il~~l~~-~~q~llfSAT 367 (474)
.=.+|+||+|.|++ .+.|-.|++.... ..++.++.-+
T Consensus 124 ~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~ 163 (366)
T COG1474 124 TVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVS 163 (366)
T ss_pred eEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEe
Confidence 44799999999999 4566666665432 3444444433
No 350
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=89.73 E-value=2.3 Score=42.61 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=26.2
Q ss_pred CcceEEeccccccCC---hhHHHHHHhhCCCCCcEEEEE
Q 011963 330 GVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFN 365 (474)
Q Consensus 330 ~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~llfS 365 (474)
.-++|||||+|.+.. ...+..++...+...++++.+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 457899999999943 667777787777667666543
No 351
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=89.62 E-value=1.3 Score=42.58 Aligned_cols=59 Identities=14% Similarity=0.006 Sum_probs=36.9
Q ss_pred HHHHHHhcC-----CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 209 EFWKCYSSA-----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 209 ~~i~~~l~g-----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
..+..++.| .-+++.+|+| +|||.-.+--+.+.+ . ++-.++|++ +-|-..|+.+.+..+
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pG-sGKT~la~~~l~~~~-~---------~ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPG-TGKSIFSQQFLWNGL-Q---------MGEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCC-CCHHHHHHHHHHHHH-H---------cCCcEEEEE-eeCCHHHHHHHHHHh
Confidence 445555543 5789999999 999963322222222 2 255788887 556667777766665
No 352
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=89.50 E-value=1.3 Score=47.48 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=30.3
Q ss_pred HHHhCCCCccccCCCchhhHHHHHHHhcCC--cEEEEcCCCcchhHHHHHHHHHHHH
Q 011963 189 AMRHDGVEQDNPLFVNSWGIEFWKCYSSAK--DILETSGSSSTIVQIAWIVATAADS 243 (474)
Q Consensus 189 ~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~--dvl~~A~TG~SGKTlaf~lp~l~~l 243 (474)
.|.+.||... |.+.|..++... =++++.||| ||||... ..++..+
T Consensus 220 ~l~~Lg~~~~--------~~~~l~~~~~~~~GlilitGptG-SGKTTtL-~a~L~~l 266 (486)
T TIGR02533 220 DLETLGMSPE--------LLSRFERLIRRPHGIILVTGPTG-SGKTTTL-YAALSRL 266 (486)
T ss_pred CHHHcCCCHH--------HHHHHHHHHhcCCCEEEEEcCCC-CCHHHHH-HHHHhcc
Confidence 4556787544 777777776643 378999999 9999543 3345444
No 353
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=89.48 E-value=1.6 Score=48.55 Aligned_cols=140 Identities=8% Similarity=-0.000 Sum_probs=75.6
Q ss_pred cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccC-CcEEEEEecCCCHHH
Q 011963 219 DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHPGAAIDH 297 (474)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~-~i~v~~~~gg~~~~~ 297 (474)
--|..---| -|||+.-+.-++.+=...+. ..........||++|+- +..|...++.....- .+.+...+| ...
T Consensus 154 ggIladd~g-lgkt~~ti~l~l~~~~~~~~-~~~~~~~kttLivcp~s-~~~qW~~elek~~~~~~l~v~v~~g---r~k 227 (674)
T KOG1001|consen 154 GGILADDMG-LGKTVKTIALILKQKLKSKE-EDRQKEFKTTLIVCPTS-LLTQWKTELEKVTEEDKLSIYVYHG---RTK 227 (674)
T ss_pred cceEeeccc-cchHHHHHHHHHhcccCCcc-hhhccccCceeEecchH-HHHHHHHHHhccCCccceEEEEecc---ccc
Confidence 445555678 89997654333311111110 00112455678888864 556677777556333 566666666 222
Q ss_pred HHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-hhHHHHHHhhCCCCCcEEEEEccCCcc
Q 011963 298 QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQSISGKPHTVVFNDCLTYT 371 (474)
Q Consensus 298 q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~l~~~~q~llfSAT~~~~ 371 (474)
....+. ++||||+|++-|-. ..+.--..-.+|+||||.+-. ..+.-.-...+.. .....+|+|....
T Consensus 228 d~~el~--~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a-~~RWcLtgtPiqn 295 (674)
T KOG1001|consen 228 DKSELN--SYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDA-KYRWCLTGTPIQN 295 (674)
T ss_pred ccchhc--CCceEEeeHHHhhc----ccccceeEEEEEeccccccCCcchHhhhhheeecc-ceeeeecCChhhh
Confidence 222333 58999999987753 111112234689999999987 3332222222222 2345667776554
No 354
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.42 E-value=2.5 Score=45.20 Aligned_cols=91 Identities=11% Similarity=0.028 Sum_probs=46.4
Q ss_pred CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCH
Q 011963 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAI 295 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~ 295 (474)
|+-++++.||| +|||.+...-+........ ....+||-+-+..++ ..+++..+ ..+|+.+.....+...
T Consensus 256 g~Vi~LvGpnG-vGKTTTiaKLA~~~~~~~G-------~~kV~LI~~Dt~Rig--A~EQLr~~AeilGVpv~~~~~~~Dl 325 (484)
T PRK06995 256 GGVFALMGPTG-VGKTTTTAKLAARCVMRHG-------ASKVALLTTDSYRIG--GHEQLRIYGKILGVPVHAVKDAADL 325 (484)
T ss_pred CcEEEEECCCC-ccHHHHHHHHHHHHHHhcC-------CCeEEEEeCCccchh--HHHHHHHHHHHhCCCeeccCCchhH
Confidence 45577889999 9999776433322111210 011234444442222 13444444 2235655554444444
Q ss_pred HHHHHHHhcCCCcEEEEChHHHH
Q 011963 296 DHQITGLRSCEPEFLVSTPERLL 318 (474)
Q Consensus 296 ~~q~~~l~~~~~~IlV~TP~rL~ 318 (474)
......+.. .-.++|-|+|+..
T Consensus 326 ~~aL~~L~d-~d~VLIDTaGr~~ 347 (484)
T PRK06995 326 RLALSELRN-KHIVLIDTIGMSQ 347 (484)
T ss_pred HHHHHhccC-CCeEEeCCCCcCh
Confidence 444445544 3468888988553
No 355
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=89.42 E-value=2.2 Score=40.49 Aligned_cols=124 Identities=14% Similarity=0.122 Sum_probs=60.9
Q ss_pred CCcEEEEcCCCcchhHHHHHHHHH-HHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCH
Q 011963 217 AKDILETSGSSSTIVQIAWIVATA-ADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAI 295 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l-~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~ 295 (474)
|.-+++.+|+| ||||. |.+-.+ +.+... +-.+++++ +.+-..++.+.+..+ |+ +.
T Consensus 19 gs~~li~G~~G-sGKT~-l~~q~l~~~~~~~---------ge~vlyvs-~ee~~~~l~~~~~s~---g~---------d~ 74 (226)
T PF06745_consen 19 GSVVLISGPPG-SGKTT-LALQFLYNGLKNF---------GEKVLYVS-FEEPPEELIENMKSF---GW---------DL 74 (226)
T ss_dssp TSEEEEEESTT-SSHHH-HHHHHHHHHHHHH---------T--EEEEE-SSS-HHHHHHHHHTT---TS----------H
T ss_pred CcEEEEEeCCC-CCcHH-HHHHHHHHhhhhc---------CCcEEEEE-ecCCHHHHHHHHHHc---CC---------cH
Confidence 35789999999 99995 333333 222220 33677776 344445566666555 21 11
Q ss_pred HHHHHHHhcCCCcEE----------EEChHHHHHHHHcCCCCCCCcceEEeccccccCC-------hhHHHHHHhhCCCC
Q 011963 296 DHQITGLRSCEPEFL----------VSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-------GDTLSLIRQSISGK 358 (474)
Q Consensus 296 ~~q~~~l~~~~~~Il----------V~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~-------~~~l~~Il~~l~~~ 358 (474)
.. ....+...++ -..++.++..+... +.--+..++|||-...+.. ...+..+...+...
T Consensus 75 ~~---~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~-i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~ 150 (226)
T PF06745_consen 75 EE---YEDSGKLKIIDAFPERIGWSPNDLEELLSKIREA-IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSR 150 (226)
T ss_dssp HH---HHHTTSEEEEESSGGGST-TSCCHHHHHHHHHHH-HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHT
T ss_pred HH---HhhcCCEEEEecccccccccccCHHHHHHHHHHH-HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHC
Confidence 11 0111111111 12233333333221 1111227999999998833 34455555555555
Q ss_pred CcEEEEEccC
Q 011963 359 PHTVVFNDCL 368 (474)
Q Consensus 359 ~q~llfSAT~ 368 (474)
-.+++|++..
T Consensus 151 ~~t~llt~~~ 160 (226)
T PF06745_consen 151 GVTTLLTSEM 160 (226)
T ss_dssp TEEEEEEEEE
T ss_pred CCEEEEEEcc
Confidence 5677777774
No 356
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=89.28 E-value=2.7 Score=45.56 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=27.7
Q ss_pred CCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEE
Q 011963 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (474)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfS 365 (474)
...-+++||||||.|.. ...+..++...|....+++.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 35678999999999986 666666776666666655544
No 357
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=89.24 E-value=0.34 Score=53.85 Aligned_cols=55 Identities=11% Similarity=-0.038 Sum_probs=41.4
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEE
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVS 288 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~ 288 (474)
.+++++|||| ||||.+|++|-+-.. .-.+||+=|-.|+........+.. |.+|..
T Consensus 140 ~hvlviApTg-SGKgvg~VIPnLL~~------------~gS~VV~DpKGE~~~~Ta~~R~~~---G~~V~~ 194 (670)
T PRK13850 140 PHSLVVAPTR-AGKGVGVVIPTLLTF------------KGSVIALDVKGELFELTSRARKAS---GDAVFK 194 (670)
T ss_pred ceEEEEecCC-CCceeeehHhHHhcC------------CCCEEEEeCCchHHHHHHHHHHhC---CCEEEE
Confidence 4899999999 999999999987421 226888889999988776665544 444443
No 358
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=89.21 E-value=8.5 Score=39.21 Aligned_cols=111 Identities=15% Similarity=0.073 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcccCCcEEEEE-ecCCCHHHHHHHHhcCCCcE--EEEChHHHHHHHHcCCCCCCCcceEEeccccccCC
Q 011963 268 KAAKVRSVCKPLKAFGIHTVSL-HPGAAIDHQITGLRSCEPEF--LVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK 344 (474)
Q Consensus 268 La~Qi~~~~~~l~~~~i~v~~~-~gg~~~~~q~~~l~~~~~~I--lV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~ 344 (474)
++..+.+.+..+...|+.++.+ +.|..... ..... -+|+ +|..|+.-.++...+.-.+.-..++||==+|.+..
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~-~~i~~--~aD~vlvv~~p~~gd~iq~~k~gi~E~aDIiVVNKaDl~~~ 209 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSE-TAVAG--MVDFFLLLQLPGAGDELQGIKKGIMELADLIVINKADGDNK 209 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccch-hHHHH--hCCEEEEEecCCchHHHHHHHhhhhhhhheEEeehhcccch
Confidence 5666777777775556665554 23333111 11222 2444 56556555444322211122234799999997753
Q ss_pred ------hhHHHHHHhhCC-----CCCcEEEEEccCCccHHHHHHHhhc
Q 011963 345 ------GDTLSLIRQSIS-----GKPHTVVFNDCLTYTSVPAVQNLLL 381 (474)
Q Consensus 345 ------~~~l~~Il~~l~-----~~~q~llfSAT~~~~v~~l~~~~l~ 381 (474)
..++...+..++ ..++++.+||+-...+.++...+..
T Consensus 210 ~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~ 257 (332)
T PRK09435 210 TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIED 257 (332)
T ss_pred hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 344555555433 2368999999988878777766643
No 359
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=89.20 E-value=1.7 Score=48.03 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=55.7
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+..+||.++|+.-+.+++..+... |+.+..++||.+..... ..+..+..+|||||.- -..++++.+++
T Consensus 236 ~~~~IIFc~tr~~~e~la~~L~~~---g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a------~~~GIDip~V~ 306 (607)
T PRK11057 236 GKSGIIYCNSRAKVEDTAARLQSR---GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVA------FGMGINKPNVR 306 (607)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC---CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEech------hhccCCCCCcC
Confidence 557899999999999888877655 78999999998865543 3445567899999962 13578888888
Q ss_pred eEEe
Q 011963 333 LLVV 336 (474)
Q Consensus 333 ~lVi 336 (474)
++|.
T Consensus 307 ~VI~ 310 (607)
T PRK11057 307 FVVH 310 (607)
T ss_pred EEEE
Confidence 7774
No 360
>PRK08840 replicative DNA helicase; Provisional
Probab=89.18 E-value=2.3 Score=45.37 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=23.9
Q ss_pred CcceEEeccccccCC-------hhHHHHHHhhCC-----CCCcEEEEE
Q 011963 330 GVSLLVVDRLDSLSK-------GDTLSLIRQSIS-----GKPHTVVFN 365 (474)
Q Consensus 330 ~l~~lViDEad~ll~-------~~~l~~Il~~l~-----~~~q~llfS 365 (474)
.+.++|||-.+.|-. ..++..|.+.+. -++.++++|
T Consensus 329 ~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi~Ls 376 (464)
T PRK08840 329 GLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALS 376 (464)
T ss_pred CCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 478999999998852 234555554442 457777776
No 361
>PRK10436 hypothetical protein; Provisional
Probab=89.17 E-value=1.6 Score=46.56 Aligned_cols=45 Identities=9% Similarity=0.037 Sum_probs=31.0
Q ss_pred HHHhCCCCccccCCCchhhHHHHHHHhcC--CcEEEEcCCCcchhHHHHHHHHHHHH
Q 011963 189 AMRHDGVEQDNPLFVNSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADS 243 (474)
Q Consensus 189 ~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g--~dvl~~A~TG~SGKTlaf~lp~l~~l 243 (474)
.|.++||... |...|..++.. .-+|++.||| ||||... ..++..+
T Consensus 196 ~L~~LG~~~~--------~~~~l~~~~~~~~GliLvtGpTG-SGKTTtL-~a~l~~~ 242 (462)
T PRK10436 196 DLETLGMTPA--------QLAQFRQALQQPQGLILVTGPTG-SGKTVTL-YSALQTL 242 (462)
T ss_pred CHHHcCcCHH--------HHHHHHHHHHhcCCeEEEECCCC-CChHHHH-HHHHHhh
Confidence 4556787655 77777766543 4688999999 9999643 3455554
No 362
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=89.12 E-value=1.7 Score=47.10 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=56.7
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
.+.+||.++|+.-|..+...+... .++++..++|+.+..... ..+..+..+|||||. +-..++|+.+++
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~--~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd------vl~rGiDip~v~ 438 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVV--TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG------VLGRGVDLLRVR 438 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhc--cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec------HhhccCCcccCC
Confidence 467999999999988887766543 378899999998866543 445667899999996 234678999999
Q ss_pred eEEe
Q 011963 333 LLVV 336 (474)
Q Consensus 333 ~lVi 336 (474)
++|.
T Consensus 439 ~VI~ 442 (518)
T PLN00206 439 QVII 442 (518)
T ss_pred EEEE
Confidence 9886
No 363
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.96 E-value=7.3 Score=42.10 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=49.9
Q ss_pred HHHHHHHHhcccCCcEEEEEecCCCH-----HHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC
Q 011963 270 AKVRSVCKPLKAFGIHTVSLHPGAAI-----DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK 344 (474)
Q Consensus 270 ~Qi~~~~~~l~~~~i~v~~~~gg~~~-----~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~ 344 (474)
.++++.+..+- -+.++..+++++.. +.....+.++.++|||||+. -.+++++.++.++||=.+|.++.
T Consensus 272 e~~~e~l~~~f-p~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~------i~kG~d~~~v~lV~vl~aD~~l~ 344 (505)
T TIGR00595 272 EQVEEELAKLF-PGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQM------IAKGHHFPNVTLVGVLDADSGLH 344 (505)
T ss_pred HHHHHHHHhhC-CCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcc------cccCCCCCcccEEEEEcCccccc
Confidence 44555555431 16788888877542 44567777778999999984 35788999999999999999776
No 364
>PRK05748 replicative DNA helicase; Provisional
Probab=88.93 E-value=0.8 Score=48.61 Aligned_cols=144 Identities=15% Similarity=0.160 Sum_probs=70.6
Q ss_pred hHHHHHHHhcC----CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe---ccHHHHHHHHHHHHhc
Q 011963 207 GIEFWKCYSSA----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV---SSQEKAAKVRSVCKPL 279 (474)
Q Consensus 207 Q~~~i~~~l~g----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~---PtreLa~Qi~~~~~~l 279 (474)
--..+..++.| .=+++.|++| .||| +|.+-++.++... .+..++|++ |..+|+..+.. .+
T Consensus 189 G~~~LD~~~~G~~~G~livIaarpg-~GKT-~~al~ia~~~a~~--------~g~~v~~fSlEms~~~l~~R~l~---~~ 255 (448)
T PRK05748 189 GFTDLDKMTSGLQPNDLIIVAARPS-VGKT-AFALNIAQNVATK--------TDKNVAIFSLEMGAESLVMRMLC---AE 255 (448)
T ss_pred ChHHHHHhcCCCCCCceEEEEeCCC-CCch-HHHHHHHHHHHHh--------CCCeEEEEeCCCCHHHHHHHHHH---Hh
Confidence 33555666555 3467788999 9999 7777777665432 244556664 33334333221 22
Q ss_pred ccCCcEEEEE-ecCCCHHH------HHHHHhcCCCcEEEE-C----hHHHHHHHHcCCCCCCCcceEEeccccccCC---
Q 011963 280 KAFGIHTVSL-HPGAAIDH------QITGLRSCEPEFLVS-T----PERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--- 344 (474)
Q Consensus 280 ~~~~i~v~~~-~gg~~~~~------q~~~l~~~~~~IlV~-T----P~rL~~ll~~~~~~l~~l~~lViDEad~ll~--- 344 (474)
. ++....+ .|...... -...+.. ..+.|. + +..+...+..-.....+++++|||=.+.|-.
T Consensus 256 ~--~v~~~~i~~~~l~~~e~~~~~~a~~~l~~--~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~ 331 (448)
T PRK05748 256 G--NIDAQRLRTGQLTDDDWPKLTIAMGSLSD--APIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGR 331 (448)
T ss_pred c--CCCHHHhhcCCCCHHHHHHHHHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCC
Confidence 2 2221111 12222211 1223333 234442 3 4444433322100112588999999998842
Q ss_pred -----hhHHHHHHhhCC-----CCCcEEEEEcc
Q 011963 345 -----GDTLSLIRQSIS-----GKPHTVVFNDC 367 (474)
Q Consensus 345 -----~~~l~~Il~~l~-----~~~q~llfSAT 367 (474)
...+..|.+.+. -++.++++|-.
T Consensus 332 ~~~~r~~~i~~i~~~LK~lAke~~i~vi~lsQl 364 (448)
T PRK05748 332 SGENRQQEVSEISRSLKALAKELKVPVIALSQL 364 (448)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHhCCeEEEeccc
Confidence 233445554441 35667776654
No 365
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=88.89 E-value=3.6 Score=34.77 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=12.3
Q ss_pred cceEEeccccccCC
Q 011963 331 VSLLVVDRLDSLSK 344 (474)
Q Consensus 331 l~~lViDEad~ll~ 344 (474)
-.+|+|||+|.+..
T Consensus 59 ~~vl~iDe~d~l~~ 72 (132)
T PF00004_consen 59 PCVLFIDEIDKLFP 72 (132)
T ss_dssp SEEEEEETGGGTSH
T ss_pred ceeeeeccchhccc
Confidence 46899999999986
No 366
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.87 E-value=4 Score=44.95 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=23.9
Q ss_pred CCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEcc
Q 011963 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDC 367 (474)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT 367 (474)
+..-+++||||+|.|.. ...+..++...+.. -+++|.+|
T Consensus 118 ~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~-tv~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAAFNALLKTLEEPPPH-AIFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCC-eEEEEEeC
Confidence 35678999999998875 44454444443433 34444444
No 367
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=88.83 E-value=29 Score=35.19 Aligned_cols=39 Identities=10% Similarity=0.110 Sum_probs=31.2
Q ss_pred HHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 419 ~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
..+..++.... ..++-|||.+..-|--+...+...|+.+
T Consensus 225 ~~~~~ll~~~~---~~ptAif~~nD~~Alg~l~~~~~~g~~v 263 (333)
T COG1609 225 EAAERLLARGE---PRPTAIFCANDLMALGALRALRELGLRV 263 (333)
T ss_pred HHHHHHHhcCC---CCCcEEEEcCcHHHHHHHHHHHHcCCCC
Confidence 45555655544 3389999999999999999999999984
No 368
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=88.82 E-value=3.2 Score=45.77 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=26.3
Q ss_pred CCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEE
Q 011963 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (474)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfS 365 (474)
+..-+++||||+|.|.. ...+...+...|..+.+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 45678999999999985 555666666555555555543
No 369
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=88.69 E-value=3.4 Score=47.22 Aligned_cols=74 Identities=9% Similarity=0.184 Sum_probs=58.2
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhc---CCCcEEEEChHHHHHHHHcCCCCCCCcce
Q 011963 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRS---CEPEFLVSTPERLLKLVSLKAIDVSGVSL 333 (474)
Q Consensus 257 ~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~---~~~~IlV~TP~rL~~ll~~~~~~l~~l~~ 333 (474)
..+||.+|+++-+..++..+......++.+..+||+.+..+|...+.. +...|||+|. +-...+++.+|.+
T Consensus 210 g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn------IAErgItIp~V~~ 283 (819)
T TIGR01970 210 GSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN------IAETSLTIEGIRV 283 (819)
T ss_pred CcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc------hHhhcccccCceE
Confidence 478999999999998888887632247899999999999888777743 3468999996 4457788888886
Q ss_pred EEe
Q 011963 334 LVV 336 (474)
Q Consensus 334 lVi 336 (474)
+|=
T Consensus 284 VID 286 (819)
T TIGR01970 284 VID 286 (819)
T ss_pred EEE
Confidence 654
No 370
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=88.64 E-value=1.4 Score=52.29 Aligned_cols=72 Identities=21% Similarity=0.308 Sum_probs=56.5
Q ss_pred CcEEEEEeccH---HHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEECh---HHHHHHHHcCCCCCC
Q 011963 256 GPFLLFLVSSQ---EKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP---ERLLKLVSLKAIDVS 329 (474)
Q Consensus 256 ~~~alil~Ptr---eLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP---~rL~~ll~~~~~~l~ 329 (474)
+..+||.+||+ +-|..+...+... |+.+..++|+.+. .....+.++.++|||||- +-+ .+++|+.
T Consensus 326 ~~~~IVFv~t~~~~~~a~~l~~~L~~~---g~~a~~lhg~~~~-~~l~~Fr~G~~~vLVata~~tdv~-----aRGIDip 396 (1171)
T TIGR01054 326 GTGGIVYVSIDYGKEKAEEIAEFLENH---GVKAVAYHATKPK-EDYEKFAEGEIDVLIGVASYYGTL-----VRGLDLP 396 (1171)
T ss_pred CCCEEEEEeccccHHHHHHHHHHHHhC---CceEEEEeCCCCH-HHHHHHHcCCCCEEEEeccccCcc-----cccCCCC
Confidence 45789999999 8888887776654 8999999999863 556788888899999973 222 3678888
Q ss_pred C-cceEEe
Q 011963 330 G-VSLLVV 336 (474)
Q Consensus 330 ~-l~~lVi 336 (474)
+ |+++|.
T Consensus 397 ~~V~~vI~ 404 (1171)
T TIGR01054 397 ERVRYAVF 404 (1171)
T ss_pred ccccEEEE
Confidence 7 788887
No 371
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=88.41 E-value=2.1 Score=46.89 Aligned_cols=45 Identities=11% Similarity=0.017 Sum_probs=31.1
Q ss_pred HHHhCCCCccccCCCchhhHHHHHHHhcC--CcEEEEcCCCcchhHHHHHHHHHHHH
Q 011963 189 AMRHDGVEQDNPLFVNSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADS 243 (474)
Q Consensus 189 ~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g--~dvl~~A~TG~SGKTlaf~lp~l~~l 243 (474)
.|.+.||... |...|..++.. .-++++.||| ||||... ..++..+
T Consensus 294 ~l~~lg~~~~--------~~~~l~~~~~~~~Glilv~G~tG-SGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 294 DIDKLGFEPD--------QKALFLEAIHKPQGMVLVTGPTG-SGKTVSL-YTALNIL 340 (564)
T ss_pred CHHHcCCCHH--------HHHHHHHHHHhcCCeEEEECCCC-CCHHHHH-HHHHHhh
Confidence 4567787654 77777766554 3678999999 9999553 4455544
No 372
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.41 E-value=6.3 Score=39.35 Aligned_cols=124 Identities=18% Similarity=0.176 Sum_probs=68.1
Q ss_pred HHHhcC-----CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEE
Q 011963 212 KCYSSA-----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHT 286 (474)
Q Consensus 212 ~~~l~g-----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v 286 (474)
|.+..| +-+|.-.|.| +||+ |+.-++. . ..-.+.+-+.+..|+.....+-.+|
T Consensus 156 PqlFtGkR~PwrgiLLyGPPG-TGKS--YLAKAVA---T---------EAnSTFFSvSSSDLvSKWmGESEkL------- 213 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPG-TGKS--YLAKAVA---T---------EANSTFFSVSSSDLVSKWMGESEKL------- 213 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCC-CcHH--HHHHHHH---h---------hcCCceEEeehHHHHHHHhccHHHH-------
Confidence 667676 3689999999 9994 5544441 1 0114566667777766544333333
Q ss_pred EEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC------hhHHHHH-----HhhC
Q 011963 287 VSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK------GDTLSLI-----RQSI 355 (474)
Q Consensus 287 ~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~------~~~l~~I-----l~~l 355 (474)
-+ .|.++-+... -..+.|||+|.|.. .+..++| +++.
T Consensus 214 ----------------Vk-----------nLFemARe~k-----PSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMq 261 (439)
T KOG0739|consen 214 ----------------VK-----------NLFEMARENK-----PSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ 261 (439)
T ss_pred ----------------HH-----------HHHHHHHhcC-----CcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhh
Confidence 00 1222222222 23577999998876 2223332 2222
Q ss_pred --C-CCCcEEEEEccCCccHH-HHHHHhhcCCceEEEcc
Q 011963 356 --S-GKPHTVVFNDCLTYTSV-PAVQNLLLGSINRLSLN 390 (474)
Q Consensus 356 --~-~~~q~llfSAT~~~~v~-~l~~~~l~~p~~~v~v~ 390 (474)
. .+--++++.||-.+++. ..+++-+...+ +|-+.
T Consensus 262 GVG~d~~gvLVLgATNiPw~LDsAIRRRFekRI-YIPLP 299 (439)
T KOG0739|consen 262 GVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRI-YIPLP 299 (439)
T ss_pred ccccCCCceEEEecCCCchhHHHHHHHHhhcce-eccCC
Confidence 2 33458999999988854 44455454433 44443
No 373
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=88.37 E-value=3.5 Score=47.15 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=59.2
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHh---cCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLR---SCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~---~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
...+||.+|++.-+..+++.+......++.+..+||+.+...|...+. .+...|||||. +-...+++.+|.
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn------IAErsLtIp~V~ 285 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN------IAETSLTIEGIR 285 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc------hHHhcccccCce
Confidence 347899999999999999988863234788999999999888777664 33478999997 445778899999
Q ss_pred eEEe
Q 011963 333 LLVV 336 (474)
Q Consensus 333 ~lVi 336 (474)
++|=
T Consensus 286 ~VID 289 (812)
T PRK11664 286 LVVD 289 (812)
T ss_pred EEEE
Confidence 6664
No 374
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=88.36 E-value=13 Score=37.34 Aligned_cols=139 Identities=11% Similarity=0.026 Sum_probs=59.5
Q ss_pred EEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHH-HH---HHHHhc-cc-CCcEEEEEecCCC
Q 011963 221 LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAK-VR---SVCKPL-KA-FGIHTVSLHPGAA 294 (474)
Q Consensus 221 l~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Q-i~---~~~~~l-~~-~~i~v~~~~gg~~ 294 (474)
|+.++.| +|||.+.++-++..+...+ .+..++++ ||..-+.. +. ..+..+ .. +.+.........-
T Consensus 1 ~i~~~r~-~GKT~~~~~~~~~~~~~~~-------~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (384)
T PF03237_consen 1 LINGGRG-SGKTTLIAIWFLWWALTRP-------PGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKI 71 (384)
T ss_dssp -EEE-SS-S-HHHHHHHHHHHHHHSSS-------S--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEE
T ss_pred CCcCCcc-ccHHHHHHHHHHHHHhhCC-------CCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcE
Confidence 4678889 8999998888887776642 12455555 55554444 22 233333 22 1222221111100
Q ss_pred HHHHHHHHhcCCCcEEEEChHH--HHHHHHcCCCCCCCcceEEeccccccCC---hhHHHHHHhhCCCCCcEEEEEccCC
Q 011963 295 IDHQITGLRSCEPEFLVSTPER--LLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLT 369 (474)
Q Consensus 295 ~~~q~~~l~~~~~~IlV~TP~r--L~~ll~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~llfSAT~~ 369 (474)
.+.+ |..|.+.+-+. -..-+.. ....+++|||+-.+.+ ...+...+.... ....+++|.|..
T Consensus 72 ------~~~n-G~~i~~~~~~~~~~~~~~~G-----~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~p~~ 138 (384)
T PF03237_consen 72 ------ILPN-GSRIQFRGADSPDSGDNIRG-----FEYDLIIIDEAAKVPDDAFSELIRRLRATWG-GSIRMYISTPPN 138 (384)
T ss_dssp ------EETT-S-EEEEES-----SHHHHHT-----S--SEEEEESGGGSTTHHHHHHHHHHHHCST-T--EEEEEE---
T ss_pred ------EecC-ceEEEEeccccccccccccc-----cccceeeeeecccCchHHHHHHHHhhhhccc-CcceEEeecCCC
Confidence 0023 55566555221 1111222 4567999999998876 222222222222 222225555443
Q ss_pred cc--HHHHHHHhhc
Q 011963 370 YT--SVPAVQNLLL 381 (474)
Q Consensus 370 ~~--v~~l~~~~l~ 381 (474)
+. ...+....+.
T Consensus 139 ~~~~~~~~~~~~~~ 152 (384)
T PF03237_consen 139 PGGWFYEIFQRNLD 152 (384)
T ss_dssp SSSHHHHHHHHHHC
T ss_pred CCCceeeeeehhhc
Confidence 33 4555554443
No 375
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.27 E-value=5.3 Score=42.86 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=25.8
Q ss_pred CCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCC
Q 011963 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLT 369 (474)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~ 369 (474)
...-+++||||+|.|.. ...+...+..-|....++ |.+|-+
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI-latte~ 156 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI-LATTEV 156 (491)
T ss_pred cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE-EEeCCh
Confidence 35678999999998875 555555555544444444 444433
No 376
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=88.22 E-value=3.7 Score=34.54 Aligned_cols=78 Identities=22% Similarity=0.312 Sum_probs=57.3
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+..+||++++..-+.++...+... ++.+..++|+.+.... ...+..+...|||+|.- -..++++..+.
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~------~~~G~d~~~~~ 98 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRKP---GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV------IARGIDLPNVS 98 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhc---CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh------hhcCcChhhCC
Confidence 457899999999999888888763 6778889998764433 34455656789999852 23567788888
Q ss_pred eEEecccccc
Q 011963 333 LLVVDRLDSL 342 (474)
Q Consensus 333 ~lViDEad~l 342 (474)
++|+...+..
T Consensus 99 ~vi~~~~~~~ 108 (131)
T cd00079 99 VVINYDLPWS 108 (131)
T ss_pred EEEEeCCCCC
Confidence 8888776433
No 377
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=88.21 E-value=1.1 Score=47.36 Aligned_cols=141 Identities=17% Similarity=0.182 Sum_probs=69.5
Q ss_pred HHHHHHhcC----CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe---ccHHHHHHHHHHHHhccc
Q 011963 209 EFWKCYSSA----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV---SSQEKAAKVRSVCKPLKA 281 (474)
Q Consensus 209 ~~i~~~l~g----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~---PtreLa~Qi~~~~~~l~~ 281 (474)
..+..++.| .=+++.|++| +||| +|++-++.++... .+..+++++ |..+++..+.... .
T Consensus 183 ~~LD~~~~G~~~G~l~vi~g~pg-~GKT-~~~l~~a~~~a~~--------~g~~vl~~SlEm~~~~i~~R~~~~~---~- 248 (434)
T TIGR00665 183 TDLDKLTSGLQPSDLIILAARPS-MGKT-AFALNIAENAAIK--------EGKPVAFFSLEMSAEQLAMRMLSSE---S- 248 (434)
T ss_pred hhhHhhcCCCCCCeEEEEEeCCC-CChH-HHHHHHHHHHHHh--------CCCeEEEEeCcCCHHHHHHHHHHHh---c-
Confidence 445555544 3467788999 9999 6777666555432 244566665 4444443332221 1
Q ss_pred CCcEEEEE-ecCCCHHH------HHHHHhcCCCcEEEE----ChHHHHHHHHcCCCCCCCcceEEeccccccCC------
Q 011963 282 FGIHTVSL-HPGAAIDH------QITGLRSCEPEFLVS----TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK------ 344 (474)
Q Consensus 282 ~~i~v~~~-~gg~~~~~------q~~~l~~~~~~IlV~----TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~------ 344 (474)
++....+ .|...... ....+.. .+-.+.. |+..+...+..-... .+++++|||=.+.|..
T Consensus 249 -~v~~~~~~~g~l~~~~~~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~~~~~~~ 325 (434)
T TIGR00665 249 -RVDSQKLRTGKLSDEDWEKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSGSGRSEN 325 (434)
T ss_pred -CCCHHHhccCCCCHHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCCCCCCCC
Confidence 2221111 22222211 1233333 2323333 344554433321111 2478999999987743
Q ss_pred -hhHHHHHHhhCC-----CCCcEEEEEc
Q 011963 345 -GDTLSLIRQSIS-----GKPHTVVFND 366 (474)
Q Consensus 345 -~~~l~~Il~~l~-----~~~q~llfSA 366 (474)
..++..|.+.+. .++.++++|-
T Consensus 326 r~~~i~~i~~~Lk~lA~e~~i~vi~lsq 353 (434)
T TIGR00665 326 RQQEVSEISRSLKALAKELNVPVIALSQ 353 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 234555544442 4566777664
No 378
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=88.19 E-value=8.4 Score=38.44 Aligned_cols=82 Identities=13% Similarity=0.034 Sum_probs=41.7
Q ss_pred cEEEEcCCCcchhHHHHHH--------------HHHHHHHHhhhhcCCCCCCcEEEEEe-ccHHHHHHHHHHHHhcccCC
Q 011963 219 DILETSGSSSTIVQIAWIV--------------ATAADSIARKEKEGFSFTGPFLLFLV-SSQEKAAKVRSVCKPLKAFG 283 (474)
Q Consensus 219 dvl~~A~TG~SGKTlaf~l--------------p~l~~l~~~~~~~~~~~~~~~alil~-PtreLa~Qi~~~~~~l~~~~ 283 (474)
=++++.++| ||||.+.-. +++..+........ .....++++- -+++...+..+.+..|...|
T Consensus 8 ~i~i~G~~G-sGKtt~~~~l~~~g~~~~d~~~~~L~~~l~~~~~~~~--~~~~~av~iD~r~~~~~~~~~~~~~~L~~~g 84 (288)
T PRK05416 8 LVIVTGLSG-AGKSVALRALEDLGYYCVDNLPPSLLPKLVELLAQSG--GIRKVAVVIDVRSRPFFDDLPEALDELRERG 84 (288)
T ss_pred EEEEECCCC-CcHHHHHHHHHHcCCeEECCcCHHHHHHHHHHHHhcC--CCCCeEEEEccCchhhHHHHHHHHHHHHHcC
Confidence 478889999 999976432 22222222111110 0122344442 22344445556666664446
Q ss_pred cEEEEEecCCCHHHHHHHHh
Q 011963 284 IHTVSLHPGAAIDHQITGLR 303 (474)
Q Consensus 284 i~v~~~~gg~~~~~q~~~l~ 303 (474)
+.+..++=..+.+...+++.
T Consensus 85 ~~~~iI~L~a~~e~L~~Rl~ 104 (288)
T PRK05416 85 IDVRVLFLDASDEVLIRRYS 104 (288)
T ss_pred CcEEEEEEECCHHHHHHHHh
Confidence 65555555566666666654
No 379
>PHA00729 NTP-binding motif containing protein
Probab=88.07 E-value=5 Score=38.54 Aligned_cols=72 Identities=11% Similarity=0.003 Sum_probs=37.0
Q ss_pred CcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-h-------hHHHHHHhhCCCCCcEEEEEccCCccHHHHHHH
Q 011963 307 PEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-G-------DTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQN 378 (474)
Q Consensus 307 ~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~-~-------~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~ 378 (474)
...++.+...|++.+....-....+.+|||||+=.-+. . -..-.+...+...++++.|...-+..+...++.
T Consensus 59 ~~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 59 QNSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred CcEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 34556666666665543111123457899999422222 0 111224444445677888877755544444443
No 380
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.06 E-value=5.4 Score=43.81 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=27.1
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCCc
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~~ 370 (474)
..-+++||||+|.|.. ...|..++..-|...-+| |.+|-+.
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fI-l~t~~~~ 160 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFI-FATTEPH 160 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEE-EEeCChh
Confidence 5678999999998886 666666666655544444 4445443
No 381
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.04 E-value=1.5 Score=48.45 Aligned_cols=40 Identities=13% Similarity=0.113 Sum_probs=26.6
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCC
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLT 369 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~ 369 (474)
..-+.+||||+|+|.. ...+..++...+....+| |.+|-+
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FI-LaTtd~ 158 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFL-FATTDP 158 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEE-EEECCh
Confidence 3467999999998875 666666766655555444 444533
No 382
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.02 E-value=5.6 Score=44.09 Aligned_cols=30 Identities=17% Similarity=0.116 Sum_probs=20.1
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCC
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGK 358 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~ 358 (474)
..-+++||||||.|-. ...+..++..-+..
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~ 151 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPR 151 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcC
Confidence 4568999999999975 44555555543333
No 383
>PRK08760 replicative DNA helicase; Provisional
Probab=88.01 E-value=2 Score=45.94 Aligned_cols=144 Identities=14% Similarity=0.158 Sum_probs=68.1
Q ss_pred hHHHHHHHhcC---Cc-EEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccC
Q 011963 207 GIEFWKCYSSA---KD-ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAF 282 (474)
Q Consensus 207 Q~~~i~~~l~g---~d-vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~ 282 (474)
--..+..+..| .+ +++.|++| .||| +|++-++..+... .+..++|++. -.=..|+...+... ..
T Consensus 215 G~~~LD~~t~G~~~G~LivIaarPg-~GKT-afal~iA~~~a~~--------~g~~V~~fSl-EMs~~ql~~Rl~a~-~s 282 (476)
T PRK08760 215 GYNDFDAMTAGLQPTDLIILAARPA-MGKT-TFALNIAEYAAIK--------SKKGVAVFSM-EMSASQLAMRLISS-NG 282 (476)
T ss_pred CcHHHHHHhcCCCCCceEEEEeCCC-CChh-HHHHHHHHHHHHh--------cCCceEEEec-cCCHHHHHHHHHHh-hC
Confidence 33445555544 24 56678999 9999 7777777665432 1334556542 11122333332222 11
Q ss_pred CcEEEEE-ecCCCHHH------HHHHHhcCCCcEEEE-----ChHHHHHHHHcCCCCCCCcceEEeccccccCC------
Q 011963 283 GIHTVSL-HPGAAIDH------QITGLRSCEPEFLVS-----TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK------ 344 (474)
Q Consensus 283 ~i~v~~~-~gg~~~~~------q~~~l~~~~~~IlV~-----TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~------ 344 (474)
++....+ .|..+... -...+.. ..|.|. |++.+...+..-. .-.+++++|||=.+.|-.
T Consensus 283 ~i~~~~i~~g~l~~~e~~~~~~a~~~l~~--~~l~I~d~~~~t~~~I~~~~r~l~-~~~~~~lVvIDyLql~~~~~~~~~ 359 (476)
T PRK08760 283 RINAQRLRTGALEDEDWARVTGAIKMLKE--TKIFIDDTPGVSPEVLRSKCRRLK-REHDLGLIVIDYLQLMSVPGNSEN 359 (476)
T ss_pred CCcHHHHhcCCCCHHHHHHHHHHHHHHhc--CCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEecHHhcCCCCCCcc
Confidence 1221112 22222111 1233333 234433 3444443332210 113478999999987742
Q ss_pred -hhHHHHHHhhC---C--CCCcEEEEE
Q 011963 345 -GDTLSLIRQSI---S--GKPHTVVFN 365 (474)
Q Consensus 345 -~~~l~~Il~~l---~--~~~q~llfS 365 (474)
..++..|.+.+ . -++.++++|
T Consensus 360 r~~ei~~Isr~LK~lAkel~ipVi~ls 386 (476)
T PRK08760 360 RATEISEISRSLKGLAKELNVPVIALS 386 (476)
T ss_pred cHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 23455554444 2 356677765
No 384
>PRK13767 ATP-dependent helicase; Provisional
Probab=87.98 E-value=4 Score=47.16 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=64.3
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhc-cc--CCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCC
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPL-KA--FGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVS 329 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l-~~--~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~ 329 (474)
+..+||.++||..|..++..+... .. .+..+..++|+.+.... ...++++...|||||.- + ..++|+.
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~-----L-e~GIDip 357 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTS-----L-ELGIDIG 357 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----H-HhcCCCC
Confidence 447899999999999999988874 21 25678889999886654 34567778999999973 1 3578999
Q ss_pred CcceEEeccccccCChhHHHHHHhhC
Q 011963 330 GVSLLVVDRLDSLSKGDTLSLIRQSI 355 (474)
Q Consensus 330 ~l~~lViDEad~ll~~~~l~~Il~~l 355 (474)
+++++|.-.. ...+..+++.+
T Consensus 358 ~Vd~VI~~~~-----P~sv~~ylQRi 378 (876)
T PRK13767 358 YIDLVVLLGS-----PKSVSRLLQRI 378 (876)
T ss_pred CCcEEEEeCC-----CCCHHHHHHhc
Confidence 9999996432 33444455544
No 385
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=87.98 E-value=1.4 Score=49.54 Aligned_cols=140 Identities=7% Similarity=0.070 Sum_probs=81.5
Q ss_pred HHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh-----cccC-CcE
Q 011963 212 KCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-----LKAF-GIH 285 (474)
Q Consensus 212 ~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~-----l~~~-~i~ 285 (474)
..+...+-+++-..|| .|||.-|.--+|+.++..... ...-+.+--|+|--+.-+.+.+-. +... +..
T Consensus 388 q~v~dn~v~~I~getg-cgk~tq~aq~iLe~~~~ns~g-----~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~ 461 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETG-CGKSTQVAQFLLESFLENSNG-----ASFNAVVSQPRRISAISLAERVANERGEEVGETCGYN 461 (1282)
T ss_pred HHHhcCceeeEeeccc-ccchhHHHHHHHHHHhhcccc-----ccccceeccccccchHHHHHHHHHhhHHhhccccccc
Confidence 3344445567778999 899999988899888886432 233455556777776666554332 2111 111
Q ss_pred EEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-hhHHHHHHhhC---CCCCcE
Q 011963 286 TVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQSI---SGKPHT 361 (474)
Q Consensus 286 v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~l---~~~~q~ 361 (474)
+. ..+.++.. ---|+.+|-|-|+..+..+. ..+.++++||.|..-- .+-+..|++-+ .++..+
T Consensus 462 vR-f~Sa~prp---------yg~i~fctvgvllr~~e~gl---rg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v 528 (1282)
T KOG0921|consen 462 VR-FDSATPRP---------YGSIMFCTVGVLLRMMENGL---RGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRV 528 (1282)
T ss_pred cc-cccccccc---------ccceeeeccchhhhhhhhcc---cccccccchhhhhhccchHHHHHHHHhhhccchhhhh
Confidence 11 01111111 12489999999999988764 4567899999996543 44444333333 234444
Q ss_pred EEEEccCCc
Q 011963 362 VVFNDCLTY 370 (474)
Q Consensus 362 llfSAT~~~ 370 (474)
+++|||+..
T Consensus 529 ~lmsatIdT 537 (1282)
T KOG0921|consen 529 VLMSATIDT 537 (1282)
T ss_pred hhhhcccch
Confidence 555555443
No 386
>PRK13342 recombination factor protein RarA; Reviewed
Probab=87.89 E-value=3.2 Score=43.54 Aligned_cols=38 Identities=8% Similarity=0.197 Sum_probs=23.2
Q ss_pred CcceEEeccccccCChhHHHHHHhhCCCCCcEEEEEccCC
Q 011963 330 GVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLT 369 (474)
Q Consensus 330 ~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~llfSAT~~ 369 (474)
.-.+|+|||+|+|.. .+...++..+.. .+++++.+|-.
T Consensus 92 ~~~vL~IDEi~~l~~-~~q~~LL~~le~-~~iilI~att~ 129 (413)
T PRK13342 92 RRTILFIDEIHRFNK-AQQDALLPHVED-GTITLIGATTE 129 (413)
T ss_pred CceEEEEechhhhCH-HHHHHHHHHhhc-CcEEEEEeCCC
Confidence 346899999999875 223334444433 45666666643
No 387
>PHA02244 ATPase-like protein
Probab=87.82 E-value=3.5 Score=42.58 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=17.6
Q ss_pred HHHhcCCcEEEEcCCCcchhHH
Q 011963 212 KCYSSAKDILETSGSSSTIVQI 233 (474)
Q Consensus 212 ~~~l~g~dvl~~A~TG~SGKTl 233 (474)
..+..+.+|++..||| +|||.
T Consensus 114 r~l~~~~PVLL~GppG-tGKTt 134 (383)
T PHA02244 114 KIVNANIPVFLKGGAG-SGKNH 134 (383)
T ss_pred HHHhcCCCEEEECCCC-CCHHH
Confidence 4456678999999999 99994
No 388
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=87.73 E-value=2 Score=47.73 Aligned_cols=40 Identities=10% Similarity=0.080 Sum_probs=26.8
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCC
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLT 369 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~ 369 (474)
...+++||||+|.|.. ...|..++...+....+|+. +|-+
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILa-Ttd~ 159 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILA-TTDP 159 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEE-eCCc
Confidence 4568999999998775 55566666665566655554 4433
No 389
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=87.68 E-value=3.3 Score=42.24 Aligned_cols=74 Identities=15% Similarity=0.252 Sum_probs=52.9
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH-------HHHHhcCCCcEEEEChHHHHHHHHcCCCCC
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ-------ITGLRSCEPEFLVSTPERLLKLVSLKAIDV 328 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q-------~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l 328 (474)
+.++||+++|++-|..++..++... .+..+..++|+.+.... ...+.++.+.|||||. + + ..++|+
T Consensus 222 ~~~~lVf~~t~~~~~~~~~~L~~~~-~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~--~---~-~~GiDi 294 (358)
T TIGR01587 222 GGKIAIIVNTVDRAQEFYQQLKENA-PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQ--V---I-EASLDI 294 (358)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhc-CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECc--c---h-hceecc
Confidence 5589999999999999988887652 23578899999875443 3345566789999996 1 1 346676
Q ss_pred CCcceEEec
Q 011963 329 SGVSLLVVD 337 (474)
Q Consensus 329 ~~l~~lViD 337 (474)
. +.++|.+
T Consensus 295 ~-~~~vi~~ 302 (358)
T TIGR01587 295 S-ADVMITE 302 (358)
T ss_pred C-CCEEEEc
Confidence 3 5666654
No 390
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.65 E-value=3 Score=45.02 Aligned_cols=27 Identities=15% Similarity=0.373 Sum_probs=18.4
Q ss_pred CCCcceEEeccccccCChhHHHHHHhhC
Q 011963 328 VSGVSLLVVDRLDSLSKGDTLSLIRQSI 355 (474)
Q Consensus 328 l~~l~~lViDEad~ll~~~~l~~Il~~l 355 (474)
+..-+++||||+|.|.. ..+..+++.+
T Consensus 114 ~~~~kVVIIDEad~ls~-~a~naLLk~L 140 (504)
T PRK14963 114 RGGRKVYILDEAHMMSK-SAFNALLKTL 140 (504)
T ss_pred cCCCeEEEEECccccCH-HHHHHHHHHH
Confidence 35678999999998864 3344445444
No 391
>PRK09401 reverse gyrase; Reviewed
Probab=87.59 E-value=0.97 Score=53.58 Aligned_cols=71 Identities=21% Similarity=0.311 Sum_probs=53.6
Q ss_pred CcEEEEEeccHHH---HHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEECh---HHHHHHHHcCCCCCC
Q 011963 256 GPFLLFLVSSQEK---AAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP---ERLLKLVSLKAIDVS 329 (474)
Q Consensus 256 ~~~alil~PtreL---a~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP---~rL~~ll~~~~~~l~ 329 (474)
+..+||.+||+.- |..+...+... |+++..++|+. ......+.++.++|||||. +-+ .+++|+.
T Consensus 328 ~~~~LIFv~t~~~~~~ae~l~~~L~~~---gi~v~~~hg~l--~~~l~~F~~G~~~VLVatas~tdv~-----aRGIDiP 397 (1176)
T PRK09401 328 GDGGLIFVPSDKGKEYAEELAEYLEDL---GINAELAISGF--ERKFEKFEEGEVDVLVGVASYYGVL-----VRGIDLP 397 (1176)
T ss_pred CCCEEEEEecccChHHHHHHHHHHHHC---CCcEEEEeCcH--HHHHHHHHCCCCCEEEEecCCCCce-----eecCCCC
Confidence 4579999998655 66666655544 89999999998 4556888888899999973 222 3677887
Q ss_pred C-cceEEe
Q 011963 330 G-VSLLVV 336 (474)
Q Consensus 330 ~-l~~lVi 336 (474)
+ |+++|.
T Consensus 398 ~~IryVI~ 405 (1176)
T PRK09401 398 ERIRYAIF 405 (1176)
T ss_pred cceeEEEE
Confidence 7 788886
No 392
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=87.59 E-value=3.1 Score=45.66 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=24.7
Q ss_pred CcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCCc
Q 011963 330 GVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 330 ~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~~ 370 (474)
.-+++||||||.|-. ...+..++...|.. -+++|.+|-+.
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~-tvfIL~Tt~~~ 160 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKH-VVFIFATTEFQ 160 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCc-EEEEEECCChH
Confidence 467899999998865 55555555554443 34444445443
No 393
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.53 E-value=1.9 Score=46.02 Aligned_cols=40 Identities=8% Similarity=0.049 Sum_probs=23.0
Q ss_pred CcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCCc
Q 011963 330 GVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 330 ~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~~ 370 (474)
.-+.+||||||+|.. ...+..++..-+ ..-+++|.+|-+.
T Consensus 121 ~~KV~IIDEah~Ls~~A~NALLKtLEEPp-~~viFILaTte~~ 162 (484)
T PRK14956 121 KYKVYIIDEVHMLTDQSFNALLKTLEEPP-AHIVFILATTEFH 162 (484)
T ss_pred CCEEEEEechhhcCHHHHHHHHHHhhcCC-CceEEEeecCChh
Confidence 457999999998875 445544444322 2223334444433
No 394
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=87.50 E-value=3.7 Score=41.63 Aligned_cols=22 Identities=5% Similarity=-0.002 Sum_probs=17.9
Q ss_pred HHHhcCCcEEEEcCCCcchhHHH
Q 011963 212 KCYSSAKDILETSGSSSTIVQIA 234 (474)
Q Consensus 212 ~~~l~g~dvl~~A~TG~SGKTla 234 (474)
-.+..++++++..|+| +|||..
T Consensus 59 ~~l~~~~~ilL~G~pG-tGKTtl 80 (327)
T TIGR01650 59 AGFAYDRRVMVQGYHG-TGKSTH 80 (327)
T ss_pred HHHhcCCcEEEEeCCC-ChHHHH
Confidence 3455678999999999 999963
No 395
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=87.44 E-value=6.3 Score=43.05 Aligned_cols=130 Identities=11% Similarity=0.059 Sum_probs=85.0
Q ss_pred cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh-c-ccCCcE-EEEEecC
Q 011963 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP-L-KAFGIH-TVSLHPG 292 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~-l-~~~~i~-v~~~~gg 292 (474)
..+-.+..-|-- -||| .|++|+|..++..- .+..+.|++.-|--+.-|+.++.. + .-++-+ +...
T Consensus 201 KQkaTVFLVPRR-HGKT-Wf~VpiIsllL~s~-------~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~--- 268 (668)
T PHA03372 201 KQKATVFLVPRR-HGKT-WFIIPIISFLLKNI-------IGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN--- 268 (668)
T ss_pred hccceEEEeccc-CCce-ehHHHHHHHHHHhh-------cCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee---
Confidence 345666777888 8999 79999999988842 688999999988887777766543 2 112211 1111
Q ss_pred CCHHHHHHHHhcCCCcEEEEChHHHH-----HHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhCC-CCCcEEEEEc
Q 011963 293 AAIDHQITGLRSCEPEFLVSTPERLL-----KLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSIS-GKPHTVVFND 366 (474)
Q Consensus 293 ~~~~~q~~~l~~~~~~IlV~TP~rL~-----~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~-~~~q~llfSA 366 (474)
+ +--|.+.-||.=- ...+.+.+.=.+..+|+||||+-+- .+.+..|+..+. .++.+|..|.
T Consensus 269 -----------k-~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~-~~a~~tilgfm~q~~~KiIfISS 335 (668)
T PHA03372 269 -----------K-DNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK-KDAFNTILGFLAQNTTKIIFISS 335 (668)
T ss_pred -----------c-CcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC-HHHHHHhhhhhcccCceEEEEeC
Confidence 1 1135555554320 1112234445567899999999766 777888888775 6788888888
Q ss_pred cCCc
Q 011963 367 CLTY 370 (474)
Q Consensus 367 T~~~ 370 (474)
|-+.
T Consensus 336 ~Nsg 339 (668)
T PHA03372 336 TNTT 339 (668)
T ss_pred CCCC
Confidence 8654
No 396
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.36 E-value=3.9 Score=44.37 Aligned_cols=37 Identities=11% Similarity=0.142 Sum_probs=25.7
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEE
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfS 365 (474)
..-+++||||+|.|.. ...+...+...|....+|+.+
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 4568999999999886 555666666655556555543
No 397
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=87.32 E-value=4.1 Score=38.05 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=37.8
Q ss_pred CCcceEEeccccccCC-----hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHh
Q 011963 329 SGVSLLVVDRLDSLSK-----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNL 379 (474)
Q Consensus 329 ~~l~~lViDEad~ll~-----~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~ 379 (474)
...++||+||+=..++ .+++..++..-|...-+|+.--..|+++.+.|...
T Consensus 114 ~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlV 169 (191)
T PRK05986 114 ESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLV 169 (191)
T ss_pred CCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchh
Confidence 4567899999988777 77888888887777777776666777666655443
No 398
>PRK06321 replicative DNA helicase; Provisional
Probab=87.28 E-value=3.6 Score=43.98 Aligned_cols=141 Identities=8% Similarity=0.035 Sum_probs=70.4
Q ss_pred HHHHHHhcC---CcE-EEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe---ccHHHHHHHHHHHHhccc
Q 011963 209 EFWKCYSSA---KDI-LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV---SSQEKAAKVRSVCKPLKA 281 (474)
Q Consensus 209 ~~i~~~l~g---~dv-l~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~---PtreLa~Qi~~~~~~l~~ 281 (474)
..+..+..| .++ ++.|.+| .||| +|++-+...+... .+..++|++ |..+|+..+.... .
T Consensus 214 ~~LD~~t~Gl~~G~LiiiaarPg-mGKT-afal~ia~~~a~~--------~g~~v~~fSLEMs~~ql~~Rlla~~---s- 279 (472)
T PRK06321 214 IDLDKMINGFSPSNLMILAARPA-MGKT-ALALNIAENFCFQ--------NRLPVGIFSLEMTVDQLIHRIICSR---S- 279 (472)
T ss_pred HHHHHHhcCCCCCcEEEEEeCCC-CChH-HHHHHHHHHHHHh--------cCCeEEEEeccCCHHHHHHHHHHhh---c-
Confidence 455666655 355 5578999 9999 7777766655422 133455554 4445544332211 1
Q ss_pred CCcEEEEE-ecCCCHH------HHHHHHhcCCCcEEEE-----ChHHHHHHHHcCCCCCCCcceEEeccccccCC-----
Q 011963 282 FGIHTVSL-HPGAAID------HQITGLRSCEPEFLVS-----TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK----- 344 (474)
Q Consensus 282 ~~i~v~~~-~gg~~~~------~q~~~l~~~~~~IlV~-----TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~----- 344 (474)
++...-+ .|..+.. .....+.. . .|.|- |...+..-++.-.. -.+++++|||=.+.|..
T Consensus 280 -~v~~~~i~~~~l~~~e~~~~~~a~~~l~~-~-~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~~~~~~~ 355 (472)
T PRK06321 280 -EVESKKISVGDLSGRDFQRIVSVVNEMQE-H-TLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLSGSGNLR 355 (472)
T ss_pred -CCCHHHhhcCCCCHHHHHHHHHHHHHHHc-C-CEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcCCCCccC
Confidence 2222112 2332211 11233444 3 35553 34444433332111 13478999999988752
Q ss_pred -----hhHHHHHHhhCC-----CCCcEEEEEcc
Q 011963 345 -----GDTLSLIRQSIS-----GKPHTVVFNDC 367 (474)
Q Consensus 345 -----~~~l~~Il~~l~-----~~~q~llfSAT 367 (474)
..++..|.+.+. -++.++++|..
T Consensus 356 ~~~~r~~ei~~Isr~LK~lAkel~vpVi~lsQL 388 (472)
T PRK06321 356 NSESRQTEISEISRMLKNLARELNIPILCLSQL 388 (472)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhCCcEEEEeec
Confidence 234455554442 35667766543
No 399
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=87.24 E-value=2.3 Score=44.58 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHH----HHHHHhcCCcEEEEcCCCcchhHHHH
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIE----FWKCYSSAKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~----~i~~~l~g~dvl~~A~TG~SGKTlaf 235 (474)
..+.+-=.|+..||.... . ....+.. .+|.+-.+.|++..+|+| +|||-.|
T Consensus 172 ~dEWid~LlrSiG~~P~~-~-~~r~k~~~L~rl~~fve~~~Nli~lGp~G-TGKThla 226 (449)
T TIGR02688 172 LEEWIDVLIRSIGYEPEG-F-EARQKLLLLARLLPLVEPNYNLIELGPKG-TGKSYIY 226 (449)
T ss_pred HHHHHHHHHHhcCCCccc-C-ChHHHHHHHHhhHHHHhcCCcEEEECCCC-CCHHHHH
Confidence 333444456667887432 1 1111222 226667778999999999 9999555
No 400
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=87.21 E-value=7.1 Score=40.44 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=30.5
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
.=+++.+++| +|||. +++-++..+.. .+-.++|+.- -|-..|+...+..+
T Consensus 83 slvLI~G~pG-~GKSt-Lllq~a~~~a~---------~g~~VlYvs~-EEs~~qi~~Ra~rl 132 (372)
T cd01121 83 SVILIGGDPG-IGKST-LLLQVAARLAK---------RGGKVLYVSG-EESPEQIKLRADRL 132 (372)
T ss_pred eEEEEEeCCC-CCHHH-HHHHHHHHHHh---------cCCeEEEEEC-CcCHHHHHHHHHHc
Confidence 4568889999 99994 44444444433 2346777764 34456666655555
No 401
>PRK09183 transposase/IS protein; Provisional
Probab=87.11 E-value=2.9 Score=41.03 Aligned_cols=20 Identities=10% Similarity=-0.065 Sum_probs=16.6
Q ss_pred HhcCCcEEEEcCCCcchhHHH
Q 011963 214 YSSAKDILETSGSSSTIVQIA 234 (474)
Q Consensus 214 ~l~g~dvl~~A~TG~SGKTla 234 (474)
+-.|.++++..|+| +|||..
T Consensus 99 i~~~~~v~l~Gp~G-tGKThL 118 (259)
T PRK09183 99 IERNENIVLLGPSG-VGKTHL 118 (259)
T ss_pred hhcCCeEEEEeCCC-CCHHHH
Confidence 45678999999999 999843
No 402
>PRK04328 hypothetical protein; Provisional
Probab=87.07 E-value=2.7 Score=40.84 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=34.3
Q ss_pred HHHHHHhc-----CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 209 EFWKCYSS-----AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 209 ~~i~~~l~-----g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
..+..++. |.-+++.+|+| +|||. |.+-++..-.. .+-.++|++ +-|-..++.+.+..+
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pG-sGKT~-l~~~fl~~~~~---------~ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPG-TGKSI-FSQQFLWNGLQ---------MGEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCC-CCHHH-HHHHHHHHHHh---------cCCcEEEEE-eeCCHHHHHHHHHHc
Confidence 34455554 45788899999 99984 22222222111 244677776 555556666666665
No 403
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=87.02 E-value=0.94 Score=49.46 Aligned_cols=146 Identities=15% Similarity=0.206 Sum_probs=78.1
Q ss_pred hhhHHHHHHHhcC--CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHH-HHHHhc-c
Q 011963 205 SWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR-SVCKPL-K 280 (474)
Q Consensus 205 ~~Q~~~i~~~l~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~-~~~~~l-~ 280 (474)
|||.+.+.++..- +.|+++.++- +|||... +-++...+.. ...-+|++.||.++|.... ..+..+ .
T Consensus 19 Py~~eimd~~~~~~v~~Vv~~k~aQ-~GkT~~~-~n~~g~~i~~--------~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 19 PYLREIMDALSDPSVREVVVMKSAQ-VGKTELL-LNWIGYSIDQ--------DPGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred hhHHHHHHhcCCcCccEEEEEEcch-hhHhHHH-HhhceEEEEe--------CCCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 4488888888665 5888999999 9999844 3333333332 2346799999999998876 445444 2
Q ss_pred cC-CcEEEEEec------CCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-----hhHH
Q 011963 281 AF-GIHTVSLHP------GAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-----GDTL 348 (474)
Q Consensus 281 ~~-~i~v~~~~g------g~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~-----~~~l 348 (474)
.. .++- .+.. +.+.. ...+. ++.-.+++.. . -..+.-..+++|++||+|.+-+ .+-+
T Consensus 89 ~sp~l~~-~~~~~~~~~~~~t~~--~k~f~-gg~l~~~ga~-S------~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~ 157 (557)
T PF05876_consen 89 ASPVLRR-KLSPSKSRDSGNTIL--YKRFP-GGFLYLVGAN-S------PSNLRSRPARYLLLDEVDRYPDDVGGEGDPV 157 (557)
T ss_pred hCHHHHH-HhCchhhcccCCchh--heecC-CCEEEEEeCC-C------CcccccCCcCEEEEechhhccccCccCCCHH
Confidence 22 2221 1111 11111 11111 1222223221 0 1233455689999999999954 3444
Q ss_pred HHHHhhCC--CCCcEEEEEccCCcc
Q 011963 349 SLIRQSIS--GKPHTVVFNDCLTYT 371 (474)
Q Consensus 349 ~~Il~~l~--~~~q~llfSAT~~~~ 371 (474)
........ .....+++..|.+..
T Consensus 158 ~la~~R~~tf~~~~K~~~~STPt~~ 182 (557)
T PF05876_consen 158 ELAEKRTKTFGSNRKILRISTPTIE 182 (557)
T ss_pred HHHHHHHhhhccCcEEEEeCCCCCC
Confidence 44333321 123344444554443
No 404
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=87.00 E-value=8.7 Score=40.55 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=70.9
Q ss_pred cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe-cc-HHH-HHHHHHHHHhcccCCcEEEEEecCCCH
Q 011963 219 DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV-SS-QEK-AAKVRSVCKPLKAFGIHTVSLHPGAAI 295 (474)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~-Pt-reL-a~Qi~~~~~~l~~~~i~v~~~~gg~~~ 295 (474)
-++++.++| +|||....- +...+... .+.+++++. -+ |.- ..|....... .++.+.....+.+.
T Consensus 101 vi~~vG~~G-sGKTTtaak-LA~~l~~~--------~g~kV~lV~~D~~R~~a~~QL~~~a~~---~gvp~~~~~~~~~P 167 (428)
T TIGR00959 101 VILMVGLQG-SGKTTTCGK-LAYYLKKK--------QGKKVLLVACDLYRPAAIEQLKVLGQQ---VGVPVFALGKGQSP 167 (428)
T ss_pred EEEEECCCC-CcHHHHHHH-HHHHHHHh--------CCCeEEEEeccccchHHHHHHHHHHHh---cCCceEecCCCCCH
Confidence 477889999 999965432 22223211 133455443 33 322 2333333333 35665544433332
Q ss_pred HH----HHHHHhcCCCc-EEEEChHHHH---HHHHc-----CCCCCCCcceEEeccccccCC--hhHHHHHHhhCCCCCc
Q 011963 296 DH----QITGLRSCEPE-FLVSTPERLL---KLVSL-----KAIDVSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPH 360 (474)
Q Consensus 296 ~~----q~~~l~~~~~~-IlV~TP~rL~---~ll~~-----~~~~l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q 360 (474)
.. -...+...++| |||=||||+. .++.. ..+....+ +||+|-. ... ......+...++ ..
T Consensus 168 ~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~-lLVvda~--tgq~~~~~a~~f~~~v~--i~ 242 (428)
T TIGR00959 168 VEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEI-LLVVDAM--TGQDAVNTAKTFNERLG--LT 242 (428)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceE-EEEEecc--chHHHHHHHHHHHhhCC--CC
Confidence 21 12222233575 8899999863 12221 12223333 7888832 111 222233333332 33
Q ss_pred EEEEEc---cCCccHHHHHHHhhcCCceEEEccCC
Q 011963 361 TVVFND---CLTYTSVPAVQNLLLGSINRLSLNQS 392 (474)
Q Consensus 361 ~llfSA---T~~~~v~~l~~~~l~~p~~~v~v~~~ 392 (474)
-++++- |.......-+...++-|+.++.++..
T Consensus 243 giIlTKlD~~~~~G~~lsi~~~~~~PI~fi~~Ge~ 277 (428)
T TIGR00959 243 GVVLTKLDGDARGGAALSVRSVTGKPIKFIGVGEK 277 (428)
T ss_pred EEEEeCccCcccccHHHHHHHHHCcCEEEEeCCCC
Confidence 344442 11111223333445678767777653
No 405
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.95 E-value=3.6 Score=42.90 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=24.1
Q ss_pred CCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEcc
Q 011963 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDC 367 (474)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT 367 (474)
+..-+++||||+|.|.. ...+...+...+... +++|.++
T Consensus 125 ~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t-~~Il~t~ 165 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHA-IFIFATT 165 (397)
T ss_pred cCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCe-EEEEEeC
Confidence 45678999999999985 444444444433333 4444444
No 406
>PRK04195 replication factor C large subunit; Provisional
Probab=86.94 E-value=4.7 Score=43.24 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=21.3
Q ss_pred CcceEEeccccccCC---hhHHHHHHhhCC-CCCcEEEE
Q 011963 330 GVSLLVVDRLDSLSK---GDTLSLIRQSIS-GKPHTVVF 364 (474)
Q Consensus 330 ~l~~lViDEad~ll~---~~~l~~Il~~l~-~~~q~llf 364 (474)
.-++|||||+|.|.. ...+..++..+. ....+|+.
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli 136 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILT 136 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEe
Confidence 457899999999975 233455555443 33444443
No 407
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.92 E-value=5.5 Score=43.39 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=26.3
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEE
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfS 365 (474)
..-+++||||||+|.. ...+..++...|....+|+.+
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 4567999999999986 666666666655555555543
No 408
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=86.79 E-value=3.1 Score=45.78 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=55.3
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+..+||.++|+..+.+++..+... |+.+..++||.+..... ..+..+.++|||||-- -..++|+.+++
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~---g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a------~~~GID~p~v~ 294 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQ---GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNA------FGMGIDKPNVR 294 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC---CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEech------hhccCcCCCCC
Confidence 447899999999999998877654 78899999998865543 3344567999999952 13567888888
Q ss_pred eEEec
Q 011963 333 LLVVD 337 (474)
Q Consensus 333 ~lViD 337 (474)
++|.=
T Consensus 295 ~VI~~ 299 (591)
T TIGR01389 295 FVIHY 299 (591)
T ss_pred EEEEc
Confidence 88753
No 409
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=86.69 E-value=0.79 Score=46.70 Aligned_cols=46 Identities=22% Similarity=0.164 Sum_probs=29.8
Q ss_pred HHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHH
Q 011963 212 KCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (474)
Q Consensus 212 ~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa 269 (474)
.++..+++++++.+|| |||| .++-.++..+-. .-+.++|=-+.||.
T Consensus 155 ~~v~~~~nili~G~tg-SGKT-Tll~aL~~~ip~----------~~ri~tiEd~~El~ 200 (332)
T PRK13900 155 HAVISKKNIIISGGTS-TGKT-TFTNAALREIPA----------IERLITVEDAREIV 200 (332)
T ss_pred HHHHcCCcEEEECCCC-CCHH-HHHHHHHhhCCC----------CCeEEEecCCCccc
Confidence 3445677999999999 9999 444444433321 33666666666764
No 410
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=86.68 E-value=6 Score=36.34 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=38.4
Q ss_pred CCcceEEeccccccCC-----hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHH
Q 011963 329 SGVSLLVVDRLDSLSK-----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQN 378 (474)
Q Consensus 329 ~~l~~lViDEad~ll~-----~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~ 378 (474)
...++||+||+=..++ .+++..+++.-|....+|+..-..|+++.+++..
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 4567899999987666 7788888888888878888777777766665543
No 411
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=86.58 E-value=3.5 Score=43.04 Aligned_cols=45 Identities=9% Similarity=0.099 Sum_probs=27.9
Q ss_pred CCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCCccHH
Q 011963 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTYTSV 373 (474)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~~~v~ 373 (474)
..+.+.+||||+|+|.. ...+..++..-|.+ -++++.+|-+..+.
T Consensus 115 ~~~~kViiIDead~m~~~aanaLLk~LEep~~~-~~fIL~a~~~~~ll 161 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERAANALLKAVEEPPPR-TVWLLCAPSPEDVL 161 (394)
T ss_pred cCCcEEEEEechhhcCHHHHHHHHHHhhcCCCC-CeEEEEECChHHCh
Confidence 35678999999999986 44455555543444 44555555444333
No 412
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=86.57 E-value=3.7 Score=42.15 Aligned_cols=71 Identities=11% Similarity=0.137 Sum_probs=52.4
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEE
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lV 335 (474)
+.++||+++|+.-|..++..++.. +.++.+..++|..+.......+ .++|||||. +-..++|+..+ ++|
T Consensus 272 ~~k~LIf~nt~~~~~~l~~~L~~~-~~~~~~~~l~g~~~~~~R~~~~---~~~iLVaTd------v~~rGiDi~~~-~vi 340 (357)
T TIGR03158 272 GERGAIILDSLDEVNRLSDLLQQQ-GLGDDIGRITGFAPKKDRERAM---QFDILLGTS------TVDVGVDFKRD-WLI 340 (357)
T ss_pred CCeEEEEECCHHHHHHHHHHHhhh-CCCceEEeeecCCCHHHHHHhc---cCCEEEEec------HHhcccCCCCc-eEE
Confidence 558999999999999999988775 2356778888888766543332 579999996 22467787766 666
Q ss_pred ec
Q 011963 336 VD 337 (474)
Q Consensus 336 iD 337 (474)
+|
T Consensus 341 ~~ 342 (357)
T TIGR03158 341 FS 342 (357)
T ss_pred EC
Confidence 64
No 413
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.46 E-value=1.9 Score=46.05 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=18.4
Q ss_pred CCCcceEEeccccccCC--hhHHHHHHhh
Q 011963 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQS 354 (474)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~ 354 (474)
+..-++|||||+|+|.. .+.+...+..
T Consensus 115 ~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~ 143 (472)
T PRK14962 115 EGKYKVYIIDEVHMLTKEAFNALLKTLEE 143 (472)
T ss_pred cCCeEEEEEEChHHhHHHHHHHHHHHHHh
Confidence 34567999999999975 4444444443
No 414
>PRK05595 replicative DNA helicase; Provisional
Probab=86.41 E-value=1.2 Score=47.17 Aligned_cols=139 Identities=16% Similarity=0.169 Sum_probs=68.1
Q ss_pred HHHHHHhcC---Cc-EEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEec---cHHHHHHHHHHHHhccc
Q 011963 209 EFWKCYSSA---KD-ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS---SQEKAAKVRSVCKPLKA 281 (474)
Q Consensus 209 ~~i~~~l~g---~d-vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~P---treLa~Qi~~~~~~l~~ 281 (474)
..+..+..| .+ +++.|++| .||| +|++-+..++... .+..++|++. ..+|+..+.....
T Consensus 189 ~~ld~~~~G~~~g~liviaarpg-~GKT-~~al~ia~~~a~~--------~g~~vl~fSlEms~~~l~~R~~a~~~---- 254 (444)
T PRK05595 189 RELDAKTSGFQKGDMILIAARPS-MGKT-TFALNIAEYAALR--------EGKSVAIFSLEMSKEQLAYKLLCSEA---- 254 (444)
T ss_pred HHHHHhcCCCCCCcEEEEEecCC-CChH-HHHHHHHHHHHHH--------cCCcEEEEecCCCHHHHHHHHHHHhc----
Confidence 555666554 34 45678999 9999 6777776554322 2446667653 3444433222211
Q ss_pred CCcEEEEEe-cCCCHHHHH-------HHHhcCCCcEEE-ECh----HHHHHHHHcCCCCCCCcceEEeccccccCC----
Q 011963 282 FGIHTVSLH-PGAAIDHQI-------TGLRSCEPEFLV-STP----ERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---- 344 (474)
Q Consensus 282 ~~i~v~~~~-gg~~~~~q~-------~~l~~~~~~IlV-~TP----~rL~~ll~~~~~~l~~l~~lViDEad~ll~---- 344 (474)
++....+. |..+. .++ ..+.. -.|.| -+| ..+...+..-.. -.+++++|||=.+.|-.
T Consensus 255 -~v~~~~~~~~~l~~-~e~~~~~~~~~~l~~--~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~vvIDylql~~~~~~~ 329 (444)
T PRK05595 255 -NVDMLRLRTGNLED-KDWENIARASGPLAA--AKIFIDDTAGVSVMEMRSKCRRLKI-EHGIDMILIDYLQLMSGGKGS 329 (444)
T ss_pred -CCCHHHHhcCCCCH-HHHHHHHHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEeHHHhccCCCCC
Confidence 22221121 22221 112 22322 12333 233 333332222111 13478999999998863
Q ss_pred ---hhHHHHHHhhC---C--CCCcEEEEEc
Q 011963 345 ---GDTLSLIRQSI---S--GKPHTVVFND 366 (474)
Q Consensus 345 ---~~~l~~Il~~l---~--~~~q~llfSA 366 (474)
..++..|.+.+ . -++.++++|-
T Consensus 330 ~~r~~~v~~is~~LK~lAke~~i~vi~lsQ 359 (444)
T PRK05595 330 ESRQQEVSEISRSIKALAKEMECPVIALSQ 359 (444)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCeEEEeec
Confidence 23455554444 2 4567777753
No 415
>PHA02542 41 41 helicase; Provisional
Probab=86.41 E-value=2.6 Score=45.07 Aligned_cols=147 Identities=11% Similarity=0.065 Sum_probs=71.2
Q ss_pred hHHHHHHHh-cC---Cc-EEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe---ccHHHHHHHHHHHHh
Q 011963 207 GIEFWKCYS-SA---KD-ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV---SSQEKAAKVRSVCKP 278 (474)
Q Consensus 207 Q~~~i~~~l-~g---~d-vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~---PtreLa~Qi~~~~~~ 278 (474)
.-..+..++ .| .+ +++.|++| .||| +|++-+...+.. .+-.++|++ |..+|+..+......
T Consensus 175 G~~~LD~~t~gGl~~G~LiiIaarPg-mGKT-tfalniA~~~a~---------~g~~Vl~fSLEM~~~ql~~Rl~a~~~~ 243 (473)
T PHA02542 175 KLEILNKITKGGAERKTLNVLLAGVN-VGKS-LGLCSLAADYLQ---------QGYNVLYISMEMAEEVIAKRIDANLLD 243 (473)
T ss_pred CcHHHHHhccCCCCCCcEEEEEcCCC-ccHH-HHHHHHHHHHHh---------cCCcEEEEeccCCHHHHHHHHHHHHcC
Confidence 556667777 33 23 56678999 9999 677766665542 233556664 555554433322221
Q ss_pred cccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEE-----EChHHHHHHHHcCCCCC-CCcceEEeccccccCC-----
Q 011963 279 LKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLV-----STPERLLKLVSLKAIDV-SGVSLLVVDRLDSLSK----- 344 (474)
Q Consensus 279 l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV-----~TP~rL~~ll~~~~~~l-~~l~~lViDEad~ll~----- 344 (474)
+....++. .....+... ...+..++..|.+ .|+..+...+++-...- ..+.+||||=.+.|-.
T Consensus 244 i~~~~l~~---l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~~~~~~ 320 (473)
T PHA02542 244 VSLDDIDD---LSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVDYLGICASSRLRV 320 (473)
T ss_pred CCHHHHhh---cCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEechhhccCCcccC
Confidence 11001211 111112211 2223332222222 24455554443311111 1378999999988841
Q ss_pred -----hhHHHHHHhhCC-----CCCcEEEEEcc
Q 011963 345 -----GDTLSLIRQSIS-----GKPHTVVFNDC 367 (474)
Q Consensus 345 -----~~~l~~Il~~l~-----~~~q~llfSAT 367 (474)
...+..|.+.|. -++.++++|-.
T Consensus 321 ~~~nr~~ei~~Isr~LK~lAkel~vpVi~lsQL 353 (473)
T PHA02542 321 SSENSYTYVKAIAEELRGLAVEHDVVVWTAAQT 353 (473)
T ss_pred CCCChHHHHHHHHHHHHHHHHHhCCeEEEEEee
Confidence 334445544442 35777777544
No 416
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.33 E-value=1.3 Score=49.77 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=36.1
Q ss_pred ceEEeccccccCC---hhHHHHHHhhCCCCCcEEEEEccCCc
Q 011963 332 SLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 332 ~~lViDEad~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~ 370 (474)
=+||||..|++-+ ...|..++++.|.+.+.++.|-+-|+
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 5899999999999 89999999999999999999988775
No 417
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=86.31 E-value=23 Score=36.09 Aligned_cols=110 Identities=15% Similarity=0.216 Sum_probs=80.7
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHh-cccCCcEEEEEecC-CCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKP-LKAFGIHTVSLHPG-AAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~-l~~~~i~v~~~~gg-~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
.+--.||.+|+-+-..|+...++. +. ..+++++++. ....+++..+++|..+|||+|. +-.+++.+.+|+
T Consensus 304 ~~~P~liF~p~I~~~eq~a~~lk~~~~--~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTT------ILERGVTfp~vd 375 (441)
T COG4098 304 TGRPVLIFFPEIETMEQVAAALKKKLP--KETIASVHSEDQHRKEKVEAFRDGKITLLITTT------ILERGVTFPNVD 375 (441)
T ss_pred cCCcEEEEecchHHHHHHHHHHHhhCC--ccceeeeeccCccHHHHHHHHHcCceEEEEEee------hhhcccccccce
Confidence 355689999999999999999854 42 2444555554 4456678899998899999995 335678899999
Q ss_pred eEEeccccccCChhHHHHHHhhCCC-----CCcEEEEEccCCccH
Q 011963 333 LLVVDRLDSLSKGDTLSLIRQSISG-----KPHTVVFNDCLTYTS 372 (474)
Q Consensus 333 ~lViDEad~ll~~~~l~~Il~~l~~-----~~q~llfSAT~~~~v 372 (474)
.+||+-=|+++....+-+|...... .--+++|=--.+..+
T Consensus 376 V~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM 420 (441)
T COG4098 376 VFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAM 420 (441)
T ss_pred EEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHH
Confidence 9999999999987777788776642 233566655444443
No 418
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=86.00 E-value=6.4 Score=39.77 Aligned_cols=56 Identities=5% Similarity=0.206 Sum_probs=35.9
Q ss_pred cEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEE
Q 011963 308 EFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (474)
Q Consensus 308 ~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfS 365 (474)
.|-|-....+.+.+....+. ..-+.+|||+||.|-. ...+..++..-| +..+++.+
T Consensus 103 ~I~id~ir~i~~~l~~~p~~-~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~ 160 (314)
T PRK07399 103 QIRLEQIREIKRFLSRPPLE-APRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIA 160 (314)
T ss_pred cCcHHHHHHHHHHHccCccc-CCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEE
Confidence 34444444555555554443 5689999999999986 666777776655 66444443
No 419
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=85.95 E-value=6.9 Score=36.52 Aligned_cols=37 Identities=5% Similarity=-0.024 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEec
Q 011963 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS 264 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~P 264 (474)
|.=+.+.+|+| ||||.-. +-++..... .+-.++|+.-
T Consensus 12 g~i~~i~G~~G-sGKT~l~-~~~~~~~~~---------~g~~v~yi~~ 48 (209)
T TIGR02237 12 GTITQIYGPPG-SGKTNIC-MILAVNAAR---------QGKKVVYIDT 48 (209)
T ss_pred CeEEEEECCCC-CCHHHHH-HHHHHHHHh---------CCCeEEEEEC
Confidence 34678889999 9999544 333333222 2446777765
No 420
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=85.93 E-value=1.4 Score=44.79 Aligned_cols=66 Identities=9% Similarity=-0.020 Sum_probs=45.7
Q ss_pred CCCCccccCCCchhhHHHHHHHhcCC-cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHH
Q 011963 193 DGVEQDNPLFVNSWGIEFWKCYSSAK-DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAK 271 (474)
Q Consensus 193 ~g~~~ptpi~~~~~Q~~~i~~~l~g~-dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Q 271 (474)
..|...++- |..++-.+..++ ++|++..|| ||||.. ++.+...-. ..-++|.|--|.||-.+
T Consensus 153 i~~gt~~~~-----~a~~L~~av~~r~NILisGGTG-SGKTTl-----LNal~~~i~------~~eRvItiEDtaELql~ 215 (355)
T COG4962 153 IIFGTMIRR-----AAKFLRRAVGIRCNILISGGTG-SGKTTL-----LNALSGFID------SDERVITIEDTAELQLA 215 (355)
T ss_pred HHcCCcCHH-----HHHHHHHHHhhceeEEEeCCCC-CCHHHH-----HHHHHhcCC------CcccEEEEeehhhhccC
Confidence 366677766 888888888877 999999999 999852 222222111 12389999999998554
Q ss_pred HHHH
Q 011963 272 VRSV 275 (474)
Q Consensus 272 i~~~ 275 (474)
.-++
T Consensus 216 ~ph~ 219 (355)
T COG4962 216 HPHV 219 (355)
T ss_pred CCce
Confidence 4443
No 421
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.89 E-value=0.78 Score=46.30 Aligned_cols=49 Identities=12% Similarity=0.120 Sum_probs=34.0
Q ss_pred HHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHH
Q 011963 209 EFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (474)
Q Consensus 209 ~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa 269 (474)
..|-++..+++++++.+|| |||| .++.+++..+-. ..+.+.+=-|.|+.
T Consensus 135 yL~~~ie~~~siii~G~t~-sGKT-t~lnall~~Ip~----------~~rivtIEdt~E~~ 183 (312)
T COG0630 135 YLWLAIEARKSIIICGGTA-SGKT-TLLNALLDFIPP----------EERIVTIEDTPELK 183 (312)
T ss_pred HHHHHHHcCCcEEEECCCC-CCHH-HHHHHHHHhCCc----------hhcEEEEecccccc
Confidence 3566677788999999999 9999 455555533322 33667777777763
No 422
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=85.85 E-value=6.8 Score=43.16 Aligned_cols=93 Identities=16% Similarity=0.241 Sum_probs=68.5
Q ss_pred CCcEEEEEeccHHH--------HHHHHHHHHhcccC-CcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHH
Q 011963 255 TGPFLLFLVSSQEK--------AAKVRSVCKPLKAF-GIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVS 322 (474)
Q Consensus 255 ~~~~alil~PtreL--------a~Qi~~~~~~l~~~-~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~ 322 (474)
.|-++.||||--|= |..++..+. ..+ ++++..++|.+..++. ....+.+..+|||+|. +-
T Consensus 472 ~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~--~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTT------VI 543 (677)
T COG1200 472 KGRQAYVVCPLIEESEKLELQAAEELYEELK--SFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATT------VI 543 (677)
T ss_pred cCCEEEEEeccccccccchhhhHHHHHHHHH--HHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEee------EE
Confidence 47799999995432 333333333 233 7889999999885443 4455677899999995 22
Q ss_pred cCCCCCCCcceEEeccccccCChhHHHHHHhhCC
Q 011963 323 LKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSIS 356 (474)
Q Consensus 323 ~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~ 356 (474)
.-++|+-+-.++||..|+|+. ..++.++.....
T Consensus 544 EVGVdVPnATvMVIe~AERFG-LaQLHQLRGRVG 576 (677)
T COG1200 544 EVGVDVPNATVMVIENAERFG-LAQLHQLRGRVG 576 (677)
T ss_pred EecccCCCCeEEEEechhhhh-HHHHHHhccccC
Confidence 467889999999999999998 778888777775
No 423
>PRK05973 replicative DNA helicase; Provisional
Probab=85.73 E-value=2.2 Score=41.28 Aligned_cols=80 Identities=14% Similarity=0.181 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhCCCC----------ccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcC
Q 011963 182 CLNAIENAMRHDGVE----------QDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEG 251 (474)
Q Consensus 182 l~~~i~~~l~~~g~~----------~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~ 251 (474)
+++.+-+.-.+.||. .+||. .+...-+..|.-+++.+++| +||| +|.+-++.....
T Consensus 25 ~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~------~~l~GGl~~Gsl~LIaG~PG-~GKT-~lalqfa~~~a~------ 90 (237)
T PRK05973 25 LHEALDRIAAEEGFSSWSLLAAKAAATTPA------EELFSQLKPGDLVLLGARPG-HGKT-LLGLELAVEAMK------ 90 (237)
T ss_pred HHHHHHHHHHHhccchHHHHHHhccCCCCH------HHhcCCCCCCCEEEEEeCCC-CCHH-HHHHHHHHHHHh------
Confidence 555555555666776 34443 22333344556788899999 9999 454444433332
Q ss_pred CCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 252 FSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 252 ~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
.+-.++|++- -+=..|+.+.+..+
T Consensus 91 ---~Ge~vlyfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 91 ---SGRTGVFFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred ---cCCeEEEEEE-eCCHHHHHHHHHHc
Confidence 2446777752 22245566665555
No 424
>PRK08939 primosomal protein DnaI; Reviewed
Probab=85.65 E-value=7.8 Score=38.99 Aligned_cols=17 Identities=6% Similarity=-0.160 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCcchhHHH
Q 011963 217 AKDILETSGSSSTIVQIA 234 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (474)
++.+++..|+| +|||..
T Consensus 156 ~~gl~L~G~~G-~GKThL 172 (306)
T PRK08939 156 VKGLYLYGDFG-VGKSYL 172 (306)
T ss_pred CCeEEEECCCC-CCHHHH
Confidence 46899999999 999853
No 425
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=85.45 E-value=2.9 Score=45.32 Aligned_cols=98 Identities=9% Similarity=-0.012 Sum_probs=61.2
Q ss_pred HHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcC--CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEE
Q 011963 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLL 260 (474)
Q Consensus 183 ~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~al 260 (474)
.+-++.+|.+.--.++.-| +...|.+==..|..- +=++|+...| ||||.+.+--+.-.++..+... ..-.+|
T Consensus 191 dEvL~~~Lek~ss~~mrdI-V~TIQkEQneIIR~ek~~ilVVQGaAG-SGKTtiALHRvAyLlY~~R~~l----~~k~vl 264 (747)
T COG3973 191 DEVLQRVLEKNSSAKMRDI-VETIQKEQNEIIRFEKNKILVVQGAAG-SGKTTIALHRVAYLLYGYRGPL----QAKPVL 264 (747)
T ss_pred HHHHHHHHHhccchhHHHH-HHHhhHhHHHHHhccCCCeEEEecCCC-CCchhHHHHHHHHHHhcccccc----ccCceE
Confidence 3445666666644444332 111144443444443 4678889999 9999877665555555543222 233499
Q ss_pred EEeccHHHHHHHHHHHHhcccCCcEE
Q 011963 261 FLVSSQEKAAKVRSVCKPLKAFGIHT 286 (474)
Q Consensus 261 il~PtreLa~Qi~~~~~~l~~~~i~v 286 (474)
||.|.+-+..-|.+++-.|...|+..
T Consensus 265 vl~PN~vFleYis~VLPeLGe~~V~q 290 (747)
T COG3973 265 VLGPNRVFLEYISRVLPELGEEGVVQ 290 (747)
T ss_pred EEcCcHHHHHHHHHhchhhccCceee
Confidence 99999999999999998885545443
No 426
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=85.42 E-value=0.71 Score=51.17 Aligned_cols=56 Identities=27% Similarity=0.226 Sum_probs=41.1
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEE
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSL 289 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~ 289 (474)
.++++.|||| ||||.++++|-+ +. .+.-+||+=|-.|+...+....+.+ |.+|.++
T Consensus 225 ~H~Lv~ApTg-sGKt~g~VIPnL---L~---------~~gS~VV~DpKgEl~~~Ta~~R~~~---G~~V~vf 280 (641)
T PRK13822 225 THGLVFAGSG-GFKTTSVVVPTA---LK---------WGGPLVVLDPSTEVAPMVSEHRRDA---GREVIVL 280 (641)
T ss_pred ceEEEEeCCC-CCccceEehhhh---hc---------CCCCEEEEeCcHHHHHHHHHHHHHC---CCeEEEE
Confidence 4899999999 999999999976 22 1335777789999987777665444 4444443
No 427
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=84.96 E-value=2.8 Score=46.03 Aligned_cols=131 Identities=14% Similarity=0.082 Sum_probs=75.0
Q ss_pred hHHHHHHHhcC------C-cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHH-Hh
Q 011963 207 GIEFWKCYSSA------K-DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC-KP 278 (474)
Q Consensus 207 Q~~~i~~~l~g------~-dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~-~~ 278 (474)
|..|+-.+..+ + -+-++|.-| -||+.|..|.+...+... ..-.-|-+|+-|-..-++..+ +.
T Consensus 258 Qakav~~f~dai~eK~lr~~vsLtA~RG-RGKSAALGlsiA~AVa~G---------ysnIyvtSPspeNlkTlFeFv~kG 327 (1011)
T KOG2036|consen 258 QAKAVLTFFDAIVEKTLRSTVSLTASRG-RGKSAALGLSIAGAVAFG---------YSNIYVTSPSPENLKTLFEFVFKG 327 (1011)
T ss_pred HHHHHHHHHHHHHHhhhcceEEEEecCC-CCchhhhhHHHHHHHhcC---------cceEEEcCCChHHHHHHHHHHHcc
Confidence 77776555433 3 456678999 999999999888776652 334455689888776666532 22
Q ss_pred cccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHH----------------HH-cCCCCCCCcceEEeccccc
Q 011963 279 LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKL----------------VS-LKAIDVSGVSLLVVDRLDS 341 (474)
Q Consensus 279 l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~l----------------l~-~~~~~l~~l~~lViDEad~ 341 (474)
|..+++.-.. .++||-.|-+-+... +. .-...+...++||||||-.
T Consensus 328 fDaL~Yqeh~-----------------Dy~iI~s~np~fkkaivRInifr~hrQtIQYi~P~D~~kl~q~eLlVIDEAAA 390 (1011)
T KOG2036|consen 328 FDALEYQEHV-----------------DYDIIQSTNPDFKKAIVRINIFREHRQTIQYISPHDHQKLGQAELLVIDEAAA 390 (1011)
T ss_pred hhhhcchhhc-----------------chhhhhhcChhhhhhEEEEEEeccccceeEeeccchhhhccCCcEEEechhhc
Confidence 3222221100 112222221111111 11 1123367789999999987
Q ss_pred cCChhHHHHHHhhCCCCCcEEEEEccCCc
Q 011963 342 LSKGDTLSLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 342 ll~~~~l~~Il~~l~~~~q~llfSAT~~~ 370 (474)
+- .+-+..++ .+-+++++.|++.
T Consensus 391 IP-Lplvk~Li-----gPylVfmaSTinG 413 (1011)
T KOG2036|consen 391 IP-LPLVKKLI-----GPYLVFMASTING 413 (1011)
T ss_pred CC-HHHHHHhh-----cceeEEEeecccc
Confidence 76 55555554 3567888888764
No 428
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=84.93 E-value=0.82 Score=50.45 Aligned_cols=49 Identities=24% Similarity=0.206 Sum_probs=38.1
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
.++++.|||| ||||.++++|-+ +.. +--+||+=|-.|++..+...-+..
T Consensus 212 ~H~lv~ApTg-sGKgvg~VIPnL---L~~---------~gS~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSG-GFKTTSVVVPTA---LKY---------GGPLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCC-CCccceeehhhh---hcC---------CCCEEEEEChHHHHHHHHHHHHHc
Confidence 4899999999 999999999975 221 236788889999987776655544
No 429
>PTZ00293 thymidine kinase; Provisional
Probab=84.79 E-value=6.9 Score=37.16 Aligned_cols=38 Identities=3% Similarity=-0.219 Sum_probs=24.6
Q ss_pred CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEecc
Q 011963 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS 265 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Pt 265 (474)
|+=.++.+|.+ |||| +-||-.+.+... .+-.++++-|.
T Consensus 4 G~i~vi~GpMf-SGKT-teLLr~i~~y~~---------ag~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMF-SGKT-TELMRLVKRFTY---------SEKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCC-ChHH-HHHHHHHHHHHH---------cCCceEEEEec
Confidence 44457799999 9999 444444443333 35578888883
No 430
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.77 E-value=3.9 Score=45.14 Aligned_cols=42 Identities=7% Similarity=0.048 Sum_probs=25.6
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCCcc
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTYT 371 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~~~ 371 (474)
...+++||||+|+|.. ...+..++..-|....+ +|.+|-+..
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~f-IL~Ttd~~k 166 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKF-VLATTDPQK 166 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEE-EEEECCchh
Confidence 4578999999999885 44444444443444444 444454443
No 431
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=84.52 E-value=5.3 Score=41.41 Aligned_cols=15 Identities=7% Similarity=-0.139 Sum_probs=13.4
Q ss_pred cEEEEcCCCcchhHHH
Q 011963 219 DILETSGSSSTIVQIA 234 (474)
Q Consensus 219 dvl~~A~TG~SGKTla 234 (474)
+.|...|.| +|||-.
T Consensus 50 SmIl~GPPG-~GKTTl 64 (436)
T COG2256 50 SMILWGPPG-TGKTTL 64 (436)
T ss_pred eeEEECCCC-CCHHHH
Confidence 889999999 999953
No 432
>PHA02653 RNA helicase NPH-II; Provisional
Probab=84.51 E-value=3.3 Score=46.27 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=54.8
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH-HHHH-hcCCCcEEEEChHHHHHHHHcCCCCCCCcce
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ-ITGL-RSCEPEFLVSTPERLLKLVSLKAIDVSGVSL 333 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q-~~~l-~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~ 333 (474)
+..+||.+||++-+..+...+.... .++.+..+||+.+...+ ...+ ..+...|||||. +-..++++.+|.+
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~-~~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATd------IAERGIDIp~V~~ 467 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRL-PIYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTP------YLESSVTIRNATH 467 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhc-CCceEEeccCCcCHHHHHHHHHhccCceeEEeccC------hhhccccccCeeE
Confidence 3479999999998777776665542 26889999999886543 3555 455689999996 4457889999987
Q ss_pred EE
Q 011963 334 LV 335 (474)
Q Consensus 334 lV 335 (474)
+|
T Consensus 468 VI 469 (675)
T PHA02653 468 VY 469 (675)
T ss_pred EE
Confidence 75
No 433
>PRK09694 helicase Cas3; Provisional
Probab=84.45 E-value=7.6 Score=44.73 Aligned_cols=77 Identities=16% Similarity=0.275 Sum_probs=53.1
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH-------HHHH-hcCC---CcEEEEChHHHHHHHHcC
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ-------ITGL-RSCE---PEFLVSTPERLLKLVSLK 324 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q-------~~~l-~~~~---~~IlV~TP~rL~~ll~~~ 324 (474)
+-.+||+++|.+-|.++++.++........+..++|.....+. ...+ +++. ..|||+|. ++ ..
T Consensus 560 g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQ--Vi----E~ 633 (878)
T PRK09694 560 GAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQ--VV----EQ 633 (878)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECc--ch----hh
Confidence 5589999999999999999998753234788999999775433 2223 2222 36999994 22 34
Q ss_pred CCCCCCcceEEeccc
Q 011963 325 AIDVSGVSLLVVDRL 339 (474)
Q Consensus 325 ~~~l~~l~~lViDEa 339 (474)
.+++ +++++|.|-|
T Consensus 634 GLDI-d~DvlItdla 647 (878)
T PRK09694 634 SLDL-DFDWLITQLC 647 (878)
T ss_pred eeec-CCCeEEECCC
Confidence 5666 4678888744
No 434
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=84.40 E-value=5.2 Score=38.25 Aligned_cols=59 Identities=8% Similarity=-0.012 Sum_probs=31.5
Q ss_pred HHHHHHhcC-----CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 209 EFWKCYSSA-----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 209 ~~i~~~l~g-----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
..+..++.| .-+++.+++| +|||.-. .-++..... ++-.++|+.=- +-..++.+.+..+
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~G-sGKt~l~-~~~~~~~~~---------~g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHG-TGKSVLS-QQFVYGALK---------QGKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCC-CChHHHH-HHHHHHHHh---------CCCEEEEEEcC-CCHHHHHHHHHHC
Confidence 344455542 4578889999 9998433 323222221 24467776632 3334455555554
No 435
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=84.32 E-value=8.7 Score=40.92 Aligned_cols=50 Identities=12% Similarity=0.095 Sum_probs=31.1
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
.=+++..++| +|||. +++-++..+.. .+-.+||++. -|-..|+...+..+
T Consensus 95 svilI~G~pG-sGKTT-L~lq~a~~~a~---------~g~kvlYvs~-EEs~~qi~~ra~rl 144 (454)
T TIGR00416 95 SLILIGGDPG-IGKST-LLLQVACQLAK---------NQMKVLYVSG-EESLQQIKMRAIRL 144 (454)
T ss_pred eEEEEEcCCC-CCHHH-HHHHHHHHHHh---------cCCcEEEEEC-cCCHHHHHHHHHHc
Confidence 3568889999 99994 44444444433 2346778764 35556666655555
No 436
>PRK05636 replicative DNA helicase; Provisional
Probab=84.26 E-value=2.1 Score=46.12 Aligned_cols=141 Identities=9% Similarity=0.096 Sum_probs=68.7
Q ss_pred hHHHHHHHhcC---CcE-EEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe---ccHHHHHHHHHHHHhc
Q 011963 207 GIEFWKCYSSA---KDI-LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV---SSQEKAAKVRSVCKPL 279 (474)
Q Consensus 207 Q~~~i~~~l~g---~dv-l~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~---PtreLa~Qi~~~~~~l 279 (474)
--..+..+..| .++ ++.|.+| .||| +|.+-++..+... .+..++|++ |..+|+..+.....
T Consensus 251 G~~~LD~~t~Gl~~G~Liiiaarpg-~GKT-~~al~~a~~~a~~--------~g~~v~~fSlEMs~~ql~~R~ls~~s-- 318 (505)
T PRK05636 251 GFKDLDDLTNGLRGGQMIIVAARPG-VGKS-TLALDFMRSASIK--------HNKASVIFSLEMSKSEIVMRLLSAEA-- 318 (505)
T ss_pred ChHHHhhhcCCCCCCceEEEEeCCC-CCHH-HHHHHHHHHHHHh--------CCCeEEEEEeeCCHHHHHHHHHHHhc--
Confidence 33555566555 355 6678999 9999 5666555444321 133455553 55555544432222
Q ss_pred ccCCcEEEEEecCCCHHHHH-------HHHhcCCCcEEE-EChH----HHHHHHHcCCCCCCCcceEEeccccccCC---
Q 011963 280 KAFGIHTVSLHPGAAIDHQI-------TGLRSCEPEFLV-STPE----RLLKLVSLKAIDVSGVSLLVVDRLDSLSK--- 344 (474)
Q Consensus 280 ~~~~i~v~~~~gg~~~~~q~-------~~l~~~~~~IlV-~TP~----rL~~ll~~~~~~l~~l~~lViDEad~ll~--- 344 (474)
++....+..|.-...++ ..+.+ . .|.| -+|+ .+...++.-.. -.++++||||=.+.|-.
T Consensus 319 ---~v~~~~i~~g~l~~~e~~~~~~a~~~l~~-~-~l~I~d~~~~ti~~I~~~~r~~~~-~~~~~lvvIDYLql~~~~~~ 392 (505)
T PRK05636 319 ---EVRLSDMRGGKMDEDAWEKLVQRLGKIAQ-A-PIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQLMSSGKR 392 (505)
T ss_pred ---CCCHHHHhcCCCCHHHHHHHHHHHHHHhc-C-CEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcCCCCC
Confidence 22221122222111222 22333 2 3444 3443 33222221000 13478999999998863
Q ss_pred ----hhHHHHHHhhCC-----CCCcEEEEE
Q 011963 345 ----GDTLSLIRQSIS-----GKPHTVVFN 365 (474)
Q Consensus 345 ----~~~l~~Il~~l~-----~~~q~llfS 365 (474)
...+..|.+.|. -++.++++|
T Consensus 393 ~~~r~~ei~~isr~LK~lAkel~ipVi~ls 422 (505)
T PRK05636 393 VESRQQEVSEFSRQLKLLAKELDVPLIAIS 422 (505)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 234555554442 356777776
No 437
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=84.12 E-value=25 Score=35.58 Aligned_cols=18 Identities=11% Similarity=-0.171 Sum_probs=13.9
Q ss_pred CCcEEEEcCCCcchhHHHH
Q 011963 217 AKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (474)
+.=++++.|+| +|||...
T Consensus 114 ~~vi~lvGpnG-sGKTTt~ 131 (318)
T PRK10416 114 PFVILVVGVNG-VGKTTTI 131 (318)
T ss_pred CeEEEEECCCC-CcHHHHH
Confidence 44577889999 9999654
No 438
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=83.81 E-value=2.7 Score=41.73 Aligned_cols=19 Identities=5% Similarity=-0.163 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCcchhHHHH
Q 011963 216 SAKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf 235 (474)
.++-++++.||| +|||...
T Consensus 193 ~~~vi~~vGptG-vGKTTt~ 211 (282)
T TIGR03499 193 QGGVIALVGPTG-VGKTTTL 211 (282)
T ss_pred CCeEEEEECCCC-CCHHHHH
Confidence 456788999999 9999654
No 439
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=83.76 E-value=23 Score=38.17 Aligned_cols=115 Identities=21% Similarity=0.247 Sum_probs=85.8
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHH---HHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCc
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAID---HQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~---~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l 331 (474)
.+-++||.+-|+-+|..+.+.+..+ |+++..++++...- ..++.|+.|.+|+|||- .|| +.++++-.|
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~---gikv~YlHSdidTlER~eIirdLR~G~~DvLVGI-----NLL-REGLDiPEV 515 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKEL---GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLL-REGLDLPEV 515 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhc---CceEEeeeccchHHHHHHHHHHHhcCCccEEEee-----hhh-hccCCCcce
Confidence 3679999999999999888877666 99999999997743 34667778889999995 333 467899999
Q ss_pred ceEEeccccccCC----hhHHHHHHhhC-CCCCcEEEEEccCCccHHHHHHH
Q 011963 332 SLLVVDRLDSLSK----GDTLSLIRQSI-SGKPHTVVFNDCLTYTSVPAVQN 378 (474)
Q Consensus 332 ~~lViDEad~ll~----~~~l~~Il~~l-~~~~q~llfSAT~~~~v~~l~~~ 378 (474)
.++.|=.||.=.- ...+..|-+.. +.+-.++++.-.++..+...+..
T Consensus 516 sLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlYAD~iT~sM~~Ai~E 567 (663)
T COG0556 516 SLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAIDE 567 (663)
T ss_pred eEEEEeecCccccccccchHHHHHHHHhhccCCeEEEEchhhhHHHHHHHHH
Confidence 9999999996433 34444444433 34567999988988876655543
No 440
>PRK04841 transcriptional regulator MalT; Provisional
Probab=83.72 E-value=11 Score=43.48 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=33.1
Q ss_pred ceEEeccccccCC---hhHHHHHHhhCCCCCcEEEEEccCCc
Q 011963 332 SLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 332 ~~lViDEad~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~ 370 (474)
-+||||++|.+-+ .+.+..++...|....+|+.|-+.|+
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 4799999999966 56888899999999999898888665
No 441
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=83.66 E-value=3.1 Score=48.59 Aligned_cols=148 Identities=7% Similarity=-0.052 Sum_probs=86.6
Q ss_pred cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhh-------hcCCC-CCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEE
Q 011963 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKE-------KEGFS-FTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTV 287 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~-------~~~~~-~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~ 287 (474)
.|++++.+-..| .|||.+-+.-.+..+-.... ..+.+ ....-+|||+|. ++..|.+.++......++++.
T Consensus 373 ~g~~~~~ade~~-~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMG-WQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVL 450 (1394)
T ss_pred CCcceeehhhhh-ccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEE
Confidence 356788888999 99999877666544211100 01111 124467999995 455788888877655566765
Q ss_pred EEecCCCHHH-HHHHHhcCCCcEEEEChHHHHHHHHcC--------------CCCCC----Ccc--eEEeccccccCC-h
Q 011963 288 SLHPGAAIDH-QITGLRSCEPEFLVSTPERLLKLVSLK--------------AIDVS----GVS--LLVVDRLDSLSK-G 345 (474)
Q Consensus 288 ~~~gg~~~~~-q~~~l~~~~~~IlV~TP~rL~~ll~~~--------------~~~l~----~l~--~lViDEad~ll~-~ 345 (474)
...|=-.... +-..+- .+||||+|-.-|..=|... .+++. .|. .+++|||..+-. .
T Consensus 451 ~Y~Girk~~~~~~~el~--~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELL--QYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSS 528 (1394)
T ss_pred EEechhhhcccCchhhh--ccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchH
Confidence 5544211100 001222 5899999988876433221 12211 122 478999987665 6
Q ss_pred hHHHHHHhhCCCCCcEEEEEccC
Q 011963 346 DTLSLIRQSISGKPHTVVFNDCL 368 (474)
Q Consensus 346 ~~l~~Il~~l~~~~q~llfSAT~ 368 (474)
....+.+..++. ......|.|.
T Consensus 529 S~~a~M~~rL~~-in~W~VTGTP 550 (1394)
T KOG0298|consen 529 SAAAEMVRRLHA-INRWCVTGTP 550 (1394)
T ss_pred HHHHHHHHHhhh-hceeeecCCc
Confidence 666666666653 5577888884
No 442
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=83.40 E-value=15 Score=40.27 Aligned_cols=110 Identities=11% Similarity=0.159 Sum_probs=65.8
Q ss_pred ceEEeccccccCC----------hhHHHHHHhhC---CCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccC
Q 011963 332 SLLVVDRLDSLSK----------GDTLSLIRQSI---SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSA 398 (474)
Q Consensus 332 ~~lViDEad~ll~----------~~~l~~Il~~l---~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~ 398 (474)
..+.+||.|.|.- ..-+.++|-.+ ....++.++-||--+++.+-+ .+.-++. .
T Consensus 606 CVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpA---------iLRPGRl-D---- 671 (802)
T KOG0733|consen 606 CVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPA---------ILRPGRL-D---- 671 (802)
T ss_pred eEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchh---------hcCCCcc-C----
Confidence 4577999999976 33444555444 356779999999888654322 1111211 1
Q ss_pred CcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc----chHHHHHH
Q 011963 399 CIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS----TGSNCIVS 469 (474)
Q Consensus 399 ~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~----~~r~~~i~ 469 (474)
...|+-.++..++. .+|..+.+++. . -|.+.-+.+.++......||.-+ ..|+..|.
T Consensus 672 --k~LyV~lPn~~eR~----~ILK~~tkn~k----~----pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~ 732 (802)
T KOG0733|consen 672 --KLLYVGLPNAEERV----AILKTITKNTK----P----PLSSDVDLDEIARNTKCEGFTGADLAALVREASIL 732 (802)
T ss_pred --ceeeecCCCHHHHH----HHHHHHhccCC----C----CCCcccCHHHHhhcccccCCchhhHHHHHHHHHHH
Confidence 12345566667787 77777765422 1 15666777888888777777643 44444443
No 443
>PF12846 AAA_10: AAA-like domain
Probab=83.33 E-value=2.4 Score=41.55 Aligned_cols=42 Identities=10% Similarity=0.054 Sum_probs=32.1
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHH
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAA 270 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~ 270 (474)
++++++++|| ||||.+.. .++..+.. .+..++|+=|..+...
T Consensus 2 ~h~~i~G~tG-sGKT~~~~-~l~~~~~~---------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTG-SGKTTLLK-NLLEQLIR---------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCC-CcHHHHHH-HHHHHHHH---------cCCCEEEEcCCchHHH
Confidence 5789999999 99996665 55555555 3678888888877766
No 444
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=83.30 E-value=1.2 Score=46.72 Aligned_cols=52 Identities=13% Similarity=0.008 Sum_probs=35.8
Q ss_pred HHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHH
Q 011963 211 WKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (474)
Q Consensus 211 i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~ 273 (474)
+|.-...+++++.++|| ||||.. +..++..+... +..+||+=|..++....+
T Consensus 36 ~~~~~~~~h~~i~g~tG-sGKt~~-i~~l~~~~~~~---------~~~~vi~D~kg~~~~~~~ 87 (410)
T cd01127 36 FPKDAEEAHTMIIGTTG-TGKTTQ-IRELLASIRAR---------GDRAIIYDPNGGFVSKFY 87 (410)
T ss_pred CCcchhhccEEEEcCCC-CCHHHH-HHHHHHHHHhc---------CCCEEEEeCCcchhHhhc
Confidence 45556678999999999 999964 44555555542 446777777777655443
No 445
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=83.23 E-value=6.5 Score=39.79 Aligned_cols=17 Identities=6% Similarity=-0.193 Sum_probs=14.1
Q ss_pred CcEEEEcCCCcchhHHHH
Q 011963 218 KDILETSGSSSTIVQIAW 235 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (474)
..+++..|.| +|||...
T Consensus 52 ~~~ll~GppG-~GKT~la 68 (328)
T PRK00080 52 DHVLLYGPPG-LGKTTLA 68 (328)
T ss_pred CcEEEECCCC-ccHHHHH
Confidence 4789999999 9999543
No 446
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=83.20 E-value=5 Score=40.63 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=24.8
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccH
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQ 266 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Ptr 266 (474)
+=+++..|.| |||| .+++.++..... .+-.++||..-.
T Consensus 56 ~iteI~G~~G-sGKT-tLaL~~~~~~~~---------~g~~v~yId~E~ 93 (321)
T TIGR02012 56 RIIEIYGPES-SGKT-TLALHAIAEAQK---------AGGTAAFIDAEH 93 (321)
T ss_pred eEEEEECCCC-CCHH-HHHHHHHHHHHH---------cCCcEEEEcccc
Confidence 4567889999 9999 455555554443 255777775433
No 447
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=83.19 E-value=2.3 Score=42.35 Aligned_cols=15 Identities=7% Similarity=-0.119 Sum_probs=13.1
Q ss_pred CcEEEEcCCCcchhHH
Q 011963 218 KDILETSGSSSTIVQI 233 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTl 233 (474)
..+++..|.| +|||.
T Consensus 31 ~~~ll~Gp~G-~GKT~ 45 (305)
T TIGR00635 31 DHLLLYGPPG-LGKTT 45 (305)
T ss_pred CeEEEECCCC-CCHHH
Confidence 3689999999 99994
No 448
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=83.05 E-value=0.78 Score=51.02 Aligned_cols=49 Identities=8% Similarity=-0.064 Sum_probs=37.9
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
.++++.|||| ||||..|++|-|-.. .-.+||+=|-.||........+.+
T Consensus 145 ~hvLviApTr-SGKgvg~VIPnLL~~------------~~S~VV~D~KGEl~~~Ta~~R~~~ 193 (663)
T PRK13876 145 EHVLCFAPTR-SGKGVGLVVPTLLTW------------PGSAIVHDIKGENWQLTAGFRARF 193 (663)
T ss_pred ceEEEEecCC-CCcceeEehhhHHhC------------CCCEEEEeCcchHHHHHHHHHHhC
Confidence 5899999999 999999999987432 226788888888877666654443
No 449
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=83.02 E-value=4 Score=41.97 Aligned_cols=71 Identities=18% Similarity=0.366 Sum_probs=54.0
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHH---hcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGL---RSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l---~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+-..||.+.|..=+..+.-.++.+ |+....++|.++.......+ +.+.++|||||- +..+++|..+++
T Consensus 300 g~s~iVF~~t~~tt~~la~~L~~l---g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TD------VaSRGLDip~Vd 370 (476)
T KOG0330|consen 300 GNSVIVFCNTCNTTRFLALLLRNL---GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTD------VASRGLDIPHVD 370 (476)
T ss_pred CCcEEEEEeccchHHHHHHHHHhc---CcceecccchhhHHHHHHHHHHHhccCCcEEEecc------hhcccCCCCCce
Confidence 557788888887777666665555 89999999999977665544 456799999995 445778888888
Q ss_pred eEE
Q 011963 333 LLV 335 (474)
Q Consensus 333 ~lV 335 (474)
++|
T Consensus 371 ~VV 373 (476)
T KOG0330|consen 371 VVV 373 (476)
T ss_pred EEE
Confidence 776
No 450
>PRK05580 primosome assembly protein PriA; Validated
Probab=83.01 E-value=12 Score=42.10 Aligned_cols=103 Identities=15% Similarity=0.106 Sum_probs=68.7
Q ss_pred EEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC-----HHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEE
Q 011963 261 FLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA-----IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (474)
Q Consensus 261 il~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~-----~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lV 335 (474)
.+.++..=+..+.+.+..+-+ +.++..+++++. .+.....+.++.++|||||+. -.+++++.++.+++
T Consensus 431 ~l~~~g~G~e~~~e~l~~~fp-~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~------iakG~d~p~v~lV~ 503 (679)
T PRK05580 431 DLVPVGPGTERLEEELAELFP-EARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQM------LAKGHDFPNVTLVG 503 (679)
T ss_pred eeEEeeccHHHHHHHHHHhCC-CCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChh------hccCCCCCCcCEEE
Confidence 355555566777777776511 677888887764 344466777778999999984 35678999999999
Q ss_pred eccccccCC-------hhHHHHHHhhC------CCCCcEEEEEccCCc
Q 011963 336 VDRLDSLSK-------GDTLSLIRQSI------SGKPHTVVFNDCLTY 370 (474)
Q Consensus 336 iDEad~ll~-------~~~l~~Il~~l------~~~~q~llfSAT~~~ 370 (474)
|-.||.++. +..+..+.+.. .....+++.|.....
T Consensus 504 il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~ 551 (679)
T PRK05580 504 VLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEH 551 (679)
T ss_pred EEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCC
Confidence 999998876 22233333332 234566777765443
No 451
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.97 E-value=13 Score=41.18 Aligned_cols=42 Identities=7% Similarity=0.112 Sum_probs=28.2
Q ss_pred CCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCCc
Q 011963 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~~ 370 (474)
+..-+++||||+|.|.. ...+..++...|... +++|.+|-..
T Consensus 119 ~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t-ifIL~tt~~~ 162 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA-IFILATTEKH 162 (614)
T ss_pred cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe-EEEEEeCCch
Confidence 45678999999999986 566666666645443 4555555443
No 452
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=82.97 E-value=6.1 Score=44.83 Aligned_cols=78 Identities=21% Similarity=0.253 Sum_probs=60.2
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhc-c----cCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCC
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPL-K----AFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAID 327 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l-~----~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~ 327 (474)
+.++||.+.||..|..++..+..+ . .++.++..++||....+. .+.+.++...+||||.- -..++|
T Consensus 271 ~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~------lerGID 344 (742)
T TIGR03817 271 GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNA------LELGVD 344 (742)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECch------HhccCC
Confidence 568999999999999999988774 2 126778889999886543 34566777999999952 235789
Q ss_pred CCCcceEEeccc
Q 011963 328 VSGVSLLVVDRL 339 (474)
Q Consensus 328 l~~l~~lViDEa 339 (474)
+.+|+++|.-..
T Consensus 345 I~~vd~VI~~~~ 356 (742)
T TIGR03817 345 ISGLDAVVIAGF 356 (742)
T ss_pred cccccEEEEeCC
Confidence 999999887754
No 453
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=82.90 E-value=6.3 Score=42.55 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=23.6
Q ss_pred CCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccC
Q 011963 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCL 368 (474)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~ 368 (474)
...-+++||||+|.|.. ...+...+...+. .-+++|.+|-
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~-~~vfI~aTte 167 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPP-HIIFIFATTE 167 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCC-CEEEEEEeCC
Confidence 35678999999998875 4444444444332 3344444443
No 454
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=82.81 E-value=0.88 Score=50.48 Aligned_cols=46 Identities=13% Similarity=-0.012 Sum_probs=36.7
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHH
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 276 (474)
.+++++|||| ||||.+|++|.|-. .+-.+||+=|-.|+........
T Consensus 176 ~HvlviapTg-SGKgvg~ViPnLL~------------~~~S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 176 EHVLTYAPTR-SGKGVGLVVPTLLS------------WGHSSVITDLKGELWALTAGWR 221 (636)
T ss_pred ceEEEEecCC-CCCceEEEccchhh------------CCCCEEEEeCcHHHHHHHHHHH
Confidence 5899999999 99999999999842 1336899999999976655543
No 455
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=82.74 E-value=1.7 Score=44.40 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=38.2
Q ss_pred HHHHhCCCCccccCCCchhhHHHHHHHhc-CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccH
Q 011963 188 NAMRHDGVEQDNPLFVNSWGIEFWKCYSS-AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQ 266 (474)
Q Consensus 188 ~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~-g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Ptr 266 (474)
..|.+.|+-.+- +...+..+.. +.+++++.+|| ||||..+ -.++..+ . ...+.+++--+.
T Consensus 155 ~~l~~~g~~~~~-------~~~~L~~~v~~~~~ili~G~tG-sGKTTll-~al~~~i-~---------~~~riv~iEd~~ 215 (340)
T TIGR03819 155 DELVASGTFPPG-------VARLLRAIVAARLAFLISGGTG-SGKTTLL-SALLALV-A---------PDERIVLVEDAA 215 (340)
T ss_pred HHHHHcCCCCHH-------HHHHHHHHHhCCCeEEEECCCC-CCHHHHH-HHHHccC-C---------CCCcEEEECCcc
Confidence 445566765442 6666655544 56999999999 9998532 2233222 1 233667777777
Q ss_pred HH
Q 011963 267 EK 268 (474)
Q Consensus 267 eL 268 (474)
||
T Consensus 216 El 217 (340)
T TIGR03819 216 EL 217 (340)
T ss_pred ee
Confidence 77
No 456
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=82.59 E-value=4.2 Score=39.69 Aligned_cols=19 Identities=5% Similarity=-0.136 Sum_probs=16.3
Q ss_pred HhcCCcEEEEcCCCcchhHH
Q 011963 214 YSSAKDILETSGSSSTIVQI 233 (474)
Q Consensus 214 ~l~g~dvl~~A~TG~SGKTl 233 (474)
+-.|.-+++.+|.| +|||.
T Consensus 13 i~~Gqr~~I~G~~G-~GKTT 31 (249)
T cd01128 13 IGKGQRGLIVAPPK-AGKTT 31 (249)
T ss_pred cCCCCEEEEECCCC-CCHHH
Confidence 45678899999999 99994
No 457
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=82.17 E-value=4.5 Score=42.99 Aligned_cols=72 Identities=21% Similarity=0.397 Sum_probs=53.8
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHH---hcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGL---RSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l---~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
.-+++|.+-|+.-|+.++-.+--| |++++-++|..+..+....| +...+++||||- +..+++++..|+
T Consensus 426 ~~~~ivFv~tKk~AHRl~IllGLl---gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTD------vAsRGLDI~gV~ 496 (691)
T KOG0338|consen 426 QDRTIVFVRTKKQAHRLRILLGLL---GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATD------VASRGLDIEGVQ 496 (691)
T ss_pred ccceEEEEehHHHHHHHHHHHHHh---hchhhhhcccccHHHHHHHHHHHHhccCCEEEEec------hhhccCCcccee
Confidence 347899999998887665444333 89999999998877665555 445799999995 445778888888
Q ss_pred eEEe
Q 011963 333 LLVV 336 (474)
Q Consensus 333 ~lVi 336 (474)
.+|=
T Consensus 497 tVIN 500 (691)
T KOG0338|consen 497 TVIN 500 (691)
T ss_pred EEEe
Confidence 7764
No 458
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.09 E-value=1 Score=44.90 Aligned_cols=124 Identities=19% Similarity=0.205 Sum_probs=61.0
Q ss_pred cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH
Q 011963 219 DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ 298 (474)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q 298 (474)
=|||..||| ||||.. +..++..+..+....-..-.-|.-.|-..-+.|+.|= ..|.++.++ ....
T Consensus 127 LILVTGpTG-SGKSTT-lAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QR--------EvG~dT~sF-----~~aL 191 (353)
T COG2805 127 LILVTGPTG-SGKSTT-LAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQR--------EVGRDTLSF-----ANAL 191 (353)
T ss_pred eEEEeCCCC-CcHHHH-HHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHH--------HhcccHHHH-----HHHH
Confidence 478899999 999854 3567777776532110000111112222333343331 112222221 1223
Q ss_pred HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhCCCCC
Q 011963 299 ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKP 359 (474)
Q Consensus 299 ~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~ 359 (474)
...|+. .||||+.==-|=.+-+.. .+..-.--+||+==.|.......+++|+..+|..-
T Consensus 192 raALRe-DPDVIlvGEmRD~ETi~~-ALtAAETGHLV~~TLHT~sA~~ti~RiidvFp~~e 250 (353)
T COG2805 192 RAALRE-DPDVILVGEMRDLETIRL-ALTAAETGHLVFGTLHTNSAAKTIDRIIDVFPAEE 250 (353)
T ss_pred HHHhhc-CCCEEEEeccccHHHHHH-HHHHHhcCCEEEEecccccHHHHHHHHHHhCChhh
Confidence 455666 788776422111111111 11112234677777777666778888888887543
No 459
>PRK14701 reverse gyrase; Provisional
Probab=82.02 E-value=2.4 Score=51.94 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=54.3
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEECh---HHHHHHHHcCCCCCCC-c
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTP---ERLLKLVSLKAIDVSG-V 331 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP---~rL~~ll~~~~~~l~~-l 331 (474)
+..+||.+||+.-+..+......|...|+++..++|+ .......+.++.++|||||- |-+ ..++|+.+ |
T Consensus 330 g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~--R~~~l~~F~~G~~~VLVaT~s~~gva-----aRGIDiP~~V 402 (1638)
T PRK14701 330 GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK--NKKGFDLFEEGEIDYLIGVATYYGTL-----VRGLDLPERI 402 (1638)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch--HHHHHHHHHcCCCCEEEEecCCCCee-----EecCccCCcc
Confidence 4578999999886544444444454559999999997 45556788888899999994 211 35677776 8
Q ss_pred ceEEecc
Q 011963 332 SLLVVDR 338 (474)
Q Consensus 332 ~~lViDE 338 (474)
+|+|.=.
T Consensus 403 ryvi~~~ 409 (1638)
T PRK14701 403 RFAVFYG 409 (1638)
T ss_pred CEEEEeC
Confidence 8888733
No 460
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=81.95 E-value=1.1 Score=49.85 Aligned_cols=149 Identities=15% Similarity=0.133 Sum_probs=91.1
Q ss_pred hHHHHHHHhcCC----------cEEEE--cCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHH
Q 011963 207 GIEFWKCYSSAK----------DILET--SGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS 274 (474)
Q Consensus 207 Q~~~i~~~l~g~----------dvl~~--A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~ 274 (474)
|.++|-.+.+.. -.|+- |..| -|.|.|-+ |++..++ ..-+||+++-+..|--...+
T Consensus 269 QLEav~YAcQ~He~llPsG~RaGfLiGDGAGVG-KGRTvAgi--IfeNyLk---------GRKrAlW~SVSsDLKfDAER 336 (1300)
T KOG1513|consen 269 QLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVG-KGRTVAGI--IFENYLK---------GRKRALWFSVSSDLKFDAER 336 (1300)
T ss_pred HHHHHHHHHhhhhhcCCCCccceeeeccCcccC-CCceeEEE--Eehhhhc---------ccceeEEEEeccccccchhh
Confidence 777776554432 23333 4566 56777654 3444333 24589999999999888888
Q ss_pred HHHhcccCCcEEEEEe----cCCCHHHHHHHHhcCCCcEEEEChHHHH---------------HHHHcCCCCCCCcceEE
Q 011963 275 VCKPLKAFGIHTVSLH----PGAAIDHQITGLRSCEPEFLVSTPERLL---------------KLVSLKAIDVSGVSLLV 335 (474)
Q Consensus 275 ~~~~l~~~~i~v~~~~----gg~~~~~q~~~l~~~~~~IlV~TP~rL~---------------~ll~~~~~~l~~l~~lV 335 (474)
-++.+...+|.|..+. +..+.+. -...+ -.+|++|--.|+ .+++--+-++. ..+|
T Consensus 337 DL~DigA~~I~V~alnK~KYakIss~e-n~n~k---rGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~fe--GvIv 410 (1300)
T KOG1513|consen 337 DLRDIGATGIAVHALNKFKYAKISSKE-NTNTK---RGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFE--GVIV 410 (1300)
T ss_pred chhhcCCCCccceehhhcccccccccc-cCCcc---ceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccc--eeEE
Confidence 8888866688877653 2221111 01112 258888865554 33332222333 3799
Q ss_pred eccccccCC------------hhHHHHHHhhCCCCCcEEEEEccCCccHHH
Q 011963 336 VDRLDSLSK------------GDTLSLIRQSISGKPHTVVFNDCLTYTSVP 374 (474)
Q Consensus 336 iDEad~ll~------------~~~l~~Il~~l~~~~q~llfSAT~~~~v~~ 374 (474)
+||||+--. ...+..+-+.|| +.+++.-|||-..+.+.
T Consensus 411 fDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATGAsEPrN 460 (1300)
T KOG1513|consen 411 FDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATGASEPRN 460 (1300)
T ss_pred ehhhhhhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccCCCCcch
Confidence 999998643 566667777776 57899999997655443
No 461
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.78 E-value=6 Score=43.78 Aligned_cols=36 Identities=8% Similarity=0.067 Sum_probs=23.0
Q ss_pred CCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEE
Q 011963 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVV 363 (474)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~ll 363 (474)
+..-+++||||+|.|.. ...+...+...|...-+|+
T Consensus 125 ~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL 162 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIF 162 (620)
T ss_pred cCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEE
Confidence 45678999999999985 4445555554444433333
No 462
>PRK09165 replicative DNA helicase; Provisional
Probab=81.76 E-value=3.4 Score=44.50 Aligned_cols=34 Identities=12% Similarity=-0.081 Sum_probs=22.5
Q ss_pred HHHHHHhcC----CcEEEEcCCCcchhHHHHHHHHHHHHH
Q 011963 209 EFWKCYSSA----KDILETSGSSSTIVQIAWIVATAADSI 244 (474)
Q Consensus 209 ~~i~~~l~g----~dvl~~A~TG~SGKTlaf~lp~l~~l~ 244 (474)
..+..++.| .=+++.|++| .||| +|.+-++..+.
T Consensus 205 ~~LD~~~gG~~~g~livIaarpg-~GKT-~~al~ia~~~a 242 (497)
T PRK09165 205 RDLDSKLGGLHPSDLIILAGRPS-MGKT-ALATNIAFNAA 242 (497)
T ss_pred HHHhhhcCCCCCCceEEEEeCCC-CChH-HHHHHHHHHHH
Confidence 445565555 2366788999 9999 66666655554
No 463
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=81.67 E-value=2 Score=47.10 Aligned_cols=45 Identities=11% Similarity=-0.065 Sum_probs=34.7
Q ss_pred ccccCCCchhhHHHHHH----HhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhh
Q 011963 197 QDNPLFVNSWGIEFWKC----YSSAKDILETSGSSSTIVQIAWIVATAADSIARK 247 (474)
Q Consensus 197 ~ptpi~~~~~Q~~~i~~----~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~ 247 (474)
+|..| |.+.+.. +-.|+=-|.-+||| |||||+.+=.++.+|....
T Consensus 15 ~PYdI-----Q~~lM~elyrvLe~GkIgIfESPTG-TGKSLSLiCaaltWL~~~e 63 (821)
T KOG1133|consen 15 TPYDI-----QEDLMRELYRVLEEGKIGIFESPTG-TGKSLSLICAALTWLRDFE 63 (821)
T ss_pred CchhH-----HHHHHHHHHHHHhcCCeeeeeCCCC-CCchHHHHHHHHHHHHHhH
Confidence 45556 7766644 45688778889999 9999999888888887653
No 464
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=81.58 E-value=1.9 Score=44.87 Aligned_cols=52 Identities=15% Similarity=0.016 Sum_probs=35.6
Q ss_pred HHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHH
Q 011963 212 KCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRS 274 (474)
Q Consensus 212 ~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~ 274 (474)
|.-...+++++...|| ||||. ++-+++..+... +-++||.=|..+.....++
T Consensus 10 ~~~~e~~~~li~G~~G-sGKT~-~i~~ll~~~~~~---------g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 10 PKDSENRHILIIGATG-SGKTQ-AIRHLLDQIRAR---------GDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp -GGGGGG-EEEEE-TT-SSHHH-HHHHHHHHHHHT---------T-EEEEEEETTHHHHHH--
T ss_pred ccchhhCcEEEECCCC-CCHHH-HHHHHHHHHHHc---------CCEEEEEECCchHHHHhcC
Confidence 4556678999999999 99996 556777777663 5578888888888766655
No 465
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=81.49 E-value=9.8 Score=42.98 Aligned_cols=41 Identities=7% Similarity=0.128 Sum_probs=25.2
Q ss_pred CcceEEeccccccCChhHHHHHHhhCCCCCcEEEEEccCCccH
Q 011963 330 GVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTS 372 (474)
Q Consensus 330 ~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~llfSAT~~~~v 372 (474)
.-.+|||||+|+|.. ..-..++..+. +.++++.+||-++..
T Consensus 109 ~~~IL~IDEIh~Ln~-~qQdaLL~~lE-~g~IiLI~aTTenp~ 149 (725)
T PRK13341 109 KRTILFIDEVHRFNK-AQQDALLPWVE-NGTITLIGATTENPY 149 (725)
T ss_pred CceEEEEeChhhCCH-HHHHHHHHHhc-CceEEEEEecCCChH
Confidence 345899999999875 11222333333 356788888765533
No 466
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=81.48 E-value=11 Score=43.59 Aligned_cols=27 Identities=4% Similarity=-0.160 Sum_probs=19.4
Q ss_pred hHHHHHHHh----cC--CcEEEEcCCCcchhHHH
Q 011963 207 GIEFWKCYS----SA--KDILETSGSSSTIVQIA 234 (474)
Q Consensus 207 Q~~~i~~~l----~g--~dvl~~A~TG~SGKTla 234 (474)
|..-|..++ .+ .++|+..|.| +|||..
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pG-vGKTal 224 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAG-VGKTAV 224 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCC-CCHHHH
Confidence 555555543 33 3999999999 999954
No 467
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=81.26 E-value=7.3 Score=38.16 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=27.1
Q ss_pred ceEEeccccccCC-------------hhHHHHHHhhC---CCCCcEEEEEccCCccH
Q 011963 332 SLLVVDRLDSLSK-------------GDTLSLIRQSI---SGKPHTVVFNDCLTYTS 372 (474)
Q Consensus 332 ~~lViDEad~ll~-------------~~~l~~Il~~l---~~~~q~llfSAT~~~~v 372 (474)
..+.|||.|.+.. +..|..++..+ .++-++-+..||-.-++
T Consensus 266 ~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi 322 (424)
T KOG0652|consen 266 TIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI 322 (424)
T ss_pred eEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc
Confidence 3567999998864 44555666666 35667777778855443
No 468
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=81.25 E-value=9.2 Score=44.10 Aligned_cols=17 Identities=0% Similarity=-0.216 Sum_probs=14.5
Q ss_pred CcEEEEcCCCcchhHHHH
Q 011963 218 KDILETSGSSSTIVQIAW 235 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (474)
.++++..|.| +|||...
T Consensus 195 ~n~lL~G~pG-vGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPG-VGKTAIV 211 (852)
T ss_pred CceEEEcCCC-CCHHHHH
Confidence 4999999999 9999644
No 469
>PRK10865 protein disaggregation chaperone; Provisional
Probab=80.97 E-value=4.5 Score=46.62 Aligned_cols=41 Identities=7% Similarity=0.041 Sum_probs=23.9
Q ss_pred ceEEeccccccCC------hhHHHHHHhhCCCCCcEEEEEccCCccH
Q 011963 332 SLLVVDRLDSLSK------GDTLSLIRQSISGKPHTVVFNDCLTYTS 372 (474)
Q Consensus 332 ~~lViDEad~ll~------~~~l~~Il~~l~~~~q~llfSAT~~~~v 372 (474)
-.|+|||+|.+.. ..+...++...-..-.+.+..||-+++.
T Consensus 273 ~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 273 VILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEY 319 (857)
T ss_pred eEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHH
Confidence 3799999999985 2223344433323345555566665543
No 470
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=80.91 E-value=61 Score=36.95 Aligned_cols=40 Identities=10% Similarity=0.124 Sum_probs=25.7
Q ss_pred ceEEeccccccCC-------hhHHHHHHhhCCCCCcEEEEEccCCcc
Q 011963 332 SLLVVDRLDSLSK-------GDTLSLIRQSISGKPHTVVFNDCLTYT 371 (474)
Q Consensus 332 ~~lViDEad~ll~-------~~~l~~Il~~l~~~~q~llfSAT~~~~ 371 (474)
.+|+|||+|.++. ..++..++..+-...++.+..||-+++
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E 326 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQE 326 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHH
Confidence 3899999999975 234444555443445566667776654
No 471
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=80.74 E-value=6 Score=39.30 Aligned_cols=110 Identities=15% Similarity=0.012 Sum_probs=59.5
Q ss_pred HHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEec
Q 011963 212 KCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHP 291 (474)
Q Consensus 212 ~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~g 291 (474)
|+-..|+-+++.+..| .|||-+-.- +. ...|.++++-|...-..-+.-....
T Consensus 89 ~A~k~g~l~~vyg~~g-~gKt~a~~~-----y~---------~s~p~~~l~~~~p~~~a~~~i~~i~------------- 140 (297)
T COG2842 89 PASKTGSLVVVYGYAG-LGKTQAAKN-----YA---------PSNPNALLIEADPSYTALVLILIIC------------- 140 (297)
T ss_pred hhhhcCceEEEecccc-chhHHHHHh-----hc---------ccCccceeecCChhhHHHHHHHHHH-------------
Confidence 4556677777788899 999965421 11 1477888887765543221111000
Q ss_pred CCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcC-CCCCCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEcc
Q 011963 292 GAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK-AIDVSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDC 367 (474)
Q Consensus 292 g~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~-~~~l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT 367 (474)
.+.+++|-+.+.++.... ..-...++++++||||+|.- .+.++.|.... .+-+.+..+
T Consensus 141 ---------------~~~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~---Gi~~vLvG~ 201 (297)
T COG2842 141 ---------------AAAFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKT---GIGVVLVGM 201 (297)
T ss_pred ---------------HHHhcccchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhh---CceEEEecC
Confidence 112222333332222110 00156688999999999985 56666665544 444555444
No 472
>PF14516 AAA_35: AAA-like domain
Probab=80.59 E-value=7.8 Score=39.40 Aligned_cols=37 Identities=5% Similarity=-0.103 Sum_probs=29.6
Q ss_pred hHHHHHHHhc-CCcEEEEcCCCcchhHHHHHHHHHHHHHH
Q 011963 207 GIEFWKCYSS-AKDILETSGSSSTIVQIAWIVATAADSIA 245 (474)
Q Consensus 207 Q~~~i~~~l~-g~dvl~~A~TG~SGKTlaf~lp~l~~l~~ 245 (474)
...++..+.. |.-+.+.||-. +||| +.+.-+++.+..
T Consensus 20 e~~~~~~i~~~G~~~~I~apRq-~GKT-Sll~~l~~~l~~ 57 (331)
T PF14516_consen 20 EQECYQEIVQPGSYIRIKAPRQ-MGKT-SLLLRLLERLQQ 57 (331)
T ss_pred HHHHHHHHhcCCCEEEEECccc-CCHH-HHHHHHHHHHHH
Confidence 8899999888 99999999999 9999 444555555544
No 473
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=80.43 E-value=5.2 Score=37.21 Aligned_cols=50 Identities=8% Similarity=0.133 Sum_probs=38.4
Q ss_pred CcceEEeccccccCC-----hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHh
Q 011963 330 GVSLLVVDRLDSLSK-----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNL 379 (474)
Q Consensus 330 ~l~~lViDEad~ll~-----~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~ 379 (474)
..+++|+||.--.+. .+++..++..-|....+|+.--..|+++.+.+...
T Consensus 122 ~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 122 KYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 567899999988776 77788888877777777777777777777766654
No 474
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.24 E-value=7.2 Score=43.05 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=24.8
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCCcc
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTYT 371 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~~~ 371 (474)
...++|||||+|.|.. ...+..++..-+ ..-+++|.+|-+..
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~-~~~ifILaTt~~~k 161 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPP-ARVTFVLATTEPHK 161 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccC-CCEEEEEecCChhh
Confidence 4568999999999974 444444444322 23345555655443
No 475
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=80.14 E-value=21 Score=33.35 Aligned_cols=22 Identities=9% Similarity=-0.170 Sum_probs=15.1
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHH
Q 011963 218 KDILETSGSSSTIVQIAWIVATAA 241 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~ 241 (474)
+.+.++.+.| |||| +|+--++.
T Consensus 23 ~~i~~~G~~g-sGKT-Tli~~l~~ 44 (207)
T TIGR00073 23 VVLNFMSSPG-SGKT-TLIEKLID 44 (207)
T ss_pred EEEEEECCCC-CCHH-HHHHHHHH
Confidence 3667888999 9999 44443443
No 476
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=80.10 E-value=6.8 Score=43.96 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=25.0
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCCc
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~~ 370 (474)
..-+.+||||||.|.. ...+...+...|... +++|.+|-+.
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~t-ifILaTte~~ 159 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHV-IFILATTEVH 159 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCce-EEEEEcCChh
Confidence 5668999999998875 445555555434433 4444445443
No 477
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=80.07 E-value=6.3 Score=40.54 Aligned_cols=86 Identities=19% Similarity=0.343 Sum_probs=62.6
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCc
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l 331 (474)
..|-+||.+-.+.=+..|+..+.-- |+.++.++||.+.... +...+.+.-|+||+|- +..++++|.++
T Consensus 420 T~PpVLIFaEkK~DVD~IhEYLLlK---GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATD------VASKGLDFp~i 490 (610)
T KOG0341|consen 420 TSPPVLIFAEKKADVDDIHEYLLLK---GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATD------VASKGLDFPDI 490 (610)
T ss_pred CCCceEEEeccccChHHHHHHHHHc---cceeEEeecCcchhHHHHHHHHHhcCCCceEEEec------chhccCCCccc
Confidence 5888999999988888888765332 8999999999876544 4555666789999995 44678888888
Q ss_pred ceEEeccccccCC-hhHHHHHHhhC
Q 011963 332 SLLVVDRLDSLSK-GDTLSLIRQSI 355 (474)
Q Consensus 332 ~~lViDEad~ll~-~~~l~~Il~~l 355 (474)
+++|= .| .++++.....+
T Consensus 491 qHVIN------yDMP~eIENYVHRI 509 (610)
T KOG0341|consen 491 QHVIN------YDMPEEIENYVHRI 509 (610)
T ss_pred hhhcc------CCChHHHHHHHHHh
Confidence 76652 12 55555555555
No 478
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=80.02 E-value=12 Score=38.03 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=19.8
Q ss_pred CCCcceEEeccccccCC--hhHHHHHHhhCCCCC
Q 011963 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKP 359 (474)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~ 359 (474)
+..-+++||||||.|.. ...+...+...|...
T Consensus 115 ~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~ 148 (355)
T TIGR02397 115 SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHV 148 (355)
T ss_pred cCCceEEEEeChhhcCHHHHHHHHHHHhCCccce
Confidence 34567999999999875 444444444333333
No 479
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=79.90 E-value=9.8 Score=40.47 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=22.8
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEE
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVV 363 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~ll 363 (474)
..-+++||||+|.|.. ...+..++...+....+|+
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEE
Confidence 4567999999999985 5555555555444443443
No 480
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=79.73 E-value=8.5 Score=39.07 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=26.1
Q ss_pred CCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEE
Q 011963 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVF 364 (474)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llf 364 (474)
...-+++||||||+|-. ...+..++..-|....+|+.
T Consensus 108 ~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~ 146 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILL 146 (329)
T ss_pred ccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEE
Confidence 45678999999999986 66666666665555555543
No 481
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=79.52 E-value=8.7 Score=36.92 Aligned_cols=14 Identities=7% Similarity=-0.173 Sum_probs=12.7
Q ss_pred cEEEEcCCCcchhHH
Q 011963 219 DILETSGSSSTIVQI 233 (474)
Q Consensus 219 dvl~~A~TG~SGKTl 233 (474)
++|...|.| .|||.
T Consensus 52 h~lf~GPPG-~GKTT 65 (233)
T PF05496_consen 52 HMLFYGPPG-LGKTT 65 (233)
T ss_dssp EEEEESSTT-SSHHH
T ss_pred eEEEECCCc-cchhH
Confidence 689999999 99984
No 482
>PHA02558 uvsW UvsW helicase; Provisional
Probab=79.48 E-value=6.5 Score=42.35 Aligned_cols=74 Identities=7% Similarity=0.034 Sum_probs=54.1
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+...||++...+-+..++..+.. .|+.+..++|+++..+.. .....+...|||+|-+-| ..++|+.+++
T Consensus 344 ~~~~lV~~~~~~h~~~L~~~L~~---~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l-----~eG~Dip~ld 415 (501)
T PHA02558 344 GENTFVMFKYVEHGKPLYEMLKK---VYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVF-----STGISIKNLH 415 (501)
T ss_pred CCCEEEEEEEHHHHHHHHHHHHH---cCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEccee-----cccccccccc
Confidence 55789999988877777666665 478999999998855432 233344567899986544 4678999999
Q ss_pred eEEec
Q 011963 333 LLVVD 337 (474)
Q Consensus 333 ~lViD 337 (474)
+||+.
T Consensus 416 ~vIl~ 420 (501)
T PHA02558 416 HVIFA 420 (501)
T ss_pred EEEEe
Confidence 99975
No 483
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=79.36 E-value=12 Score=40.92 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=24.5
Q ss_pred CCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCC
Q 011963 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLT 369 (474)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~ 369 (474)
...-+++||||+|.|.. ...+...+...| ..-+++|.+|-+
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp-~~~vfI~~tte~ 159 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEPP-PYIVFIFATTEV 159 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccCC-CCEEEEEecCCh
Confidence 35678999999999975 444444444323 334444544433
No 484
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=79.25 E-value=6.1 Score=40.11 Aligned_cols=51 Identities=12% Similarity=0.001 Sum_probs=32.6
Q ss_pred hHHHHHHHhc------CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHH
Q 011963 207 GIEFWKCYSS------AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268 (474)
Q Consensus 207 Q~~~i~~~l~------g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreL 268 (474)
-...+..++. |+=+.+..|.| |||| .+++.++..... .+-.++||.+-..+
T Consensus 39 Gi~~LD~~Lg~GGlp~G~iteI~Gp~G-sGKT-tLal~~~~~~~~---------~g~~~vyId~E~~~ 95 (325)
T cd00983 39 GSLSLDIALGIGGYPKGRIIEIYGPES-SGKT-TLALHAIAEAQK---------LGGTVAFIDAEHAL 95 (325)
T ss_pred CCHHHHHHhcCCCccCCeEEEEECCCC-CCHH-HHHHHHHHHHHH---------cCCCEEEECccccH
Confidence 3355556655 34567889999 9999 555666544443 25578888764443
No 485
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=79.19 E-value=5.3 Score=43.09 Aligned_cols=40 Identities=10% Similarity=0.202 Sum_probs=25.0
Q ss_pred cceEEeccccccCC-h----------hHHHHHHhhCC---CCCcEEEEEccCCc
Q 011963 331 VSLLVVDRLDSLSK-G----------DTLSLIRQSIS---GKPHTVVFNDCLTY 370 (474)
Q Consensus 331 l~~lViDEad~ll~-~----------~~l~~Il~~l~---~~~q~llfSAT~~~ 370 (474)
-.+|+|||+|.++. + ..+..++..+. ....++++.||-.+
T Consensus 290 p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~ 343 (512)
T TIGR03689 290 PVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNRE 343 (512)
T ss_pred CceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCCh
Confidence 34789999999975 1 12334544442 33467788888554
No 486
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=79.03 E-value=14 Score=41.63 Aligned_cols=109 Identities=14% Similarity=0.056 Sum_probs=61.4
Q ss_pred CCCCcEEEEEccCCcc--HHHHHHHh-hcC--CceEEEccCCcccccCCcEEEEEEcC-------CchhHHHHHHHHHHH
Q 011963 356 SGKPHTVVFNDCLTYT--SVPAVQNL-LLG--SINRLSLNQSVASQSACIIQSVNVCA-------SDEEKILKGIQVLDH 423 (474)
Q Consensus 356 ~~~~q~llfSAT~~~~--v~~l~~~~-l~~--p~~~v~v~~~~~~~~~~i~q~~~~~~-------~~~~K~~~l~~lL~~ 423 (474)
+....+|++|||++.. ...+.+.+ +.+ ....+.+...+.. . .|..++++ +...-...+...|..
T Consensus 454 ~~~~~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~--~--~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~ 529 (697)
T PRK11747 454 SRAPGAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDY--P--NQGKLVIPKMRAEPDNEEAHTAEMAEFLPE 529 (697)
T ss_pred hhCCEEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCH--H--HccEEEeCCCCCCCCCcHHHHHHHHHHHHH
Confidence 4456789999999863 33333222 221 1224444432211 1 11112221 112233456666767
Q ss_pred HhhccCCCCCCcEEEEEccchhHHHHHHHHhh-CCCcccc----hHHHHHHHhhc
Q 011963 424 AYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKC-KGYSIST----GSNCIVSHIKN 473 (474)
Q Consensus 424 ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~-~gi~v~~----~r~~~i~~Fk~ 473 (474)
++. . .+.+|||++|....+.++..|.. .++++.. .+...++.|++
T Consensus 530 l~~-~----~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~~~~~ll~~f~~ 579 (697)
T PRK11747 530 LLE-K----HKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQPRQRLLEKHKK 579 (697)
T ss_pred HHh-c----CCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCchHHHHHHHHHH
Confidence 766 2 45699999999999999999974 4555542 34567888864
No 487
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=78.79 E-value=14 Score=41.17 Aligned_cols=109 Identities=17% Similarity=0.054 Sum_probs=61.3
Q ss_pred CCCcEEEEEccCCcc--HHHHHHHhhcCCce-EEEccCCcccccCCcEEEEEEcCCc----h--hHHHHHHHHHHHHhhc
Q 011963 357 GKPHTVVFNDCLTYT--SVPAVQNLLLGSIN-RLSLNQSVASQSACIIQSVNVCASD----E--EKILKGIQVLDHAYGD 427 (474)
Q Consensus 357 ~~~q~llfSAT~~~~--v~~l~~~~l~~p~~-~v~v~~~~~~~~~~i~q~~~~~~~~----~--~K~~~l~~lL~~ll~~ 427 (474)
...-+|++|||+++. ...++...-..... .+.+... -....+....++.. . .=...+...|..++..
T Consensus 402 ~~~~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~sp----f~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~ 477 (654)
T COG1199 402 KVASVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSP----FNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKA 477 (654)
T ss_pred hcCcEEEeeeeccCCCcHHHHHHHcCCccccceeccCCC----CChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhh
Confidence 446799999999885 22222222112221 1222221 11222222222211 1 2334455556666655
Q ss_pred cCCCCCCcEEEEEccchhHHHHHHHHhhCCC--ccc----chHHHHHHHhhc
Q 011963 428 HFHSEPLKVLYIVGKDSKFQNLVSTLKCKGY--SIS----TGSNCIVSHIKN 473 (474)
Q Consensus 428 ~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi--~v~----~~r~~~i~~Fk~ 473 (474)
. ++++|||+.|....+.+++.|..... .+. ..+...+..|++
T Consensus 478 ~----~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~~~l~~f~~ 525 (654)
T COG1199 478 S----PGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDEREELLEKFKA 525 (654)
T ss_pred c----CCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHHHHHHHHHH
Confidence 5 45999999999999999999987764 232 445567888864
No 488
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=78.73 E-value=13 Score=44.58 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=57.1
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhc-CCCcEEEEChHHHHHHHHcCCCCCCCcceE
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVSTPERLLKLVSLKAIDVSGVSLL 334 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~-~~~~IlV~TP~rL~~ll~~~~~~l~~l~~l 334 (474)
...+||.+|+++-+..+.+.+.......+.+..+||+.+...|...+.. ++..|||+|. +-...+++.+|.++
T Consensus 286 ~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATN------IAEtSITIpgI~yV 359 (1294)
T PRK11131 286 PGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATN------VAETSLTVPGIKYV 359 (1294)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcccCCeeEEEecc------HHhhccccCcceEE
Confidence 3468999999999888888877653224567889999998888777653 3478999997 44567888899877
Q ss_pred E
Q 011963 335 V 335 (474)
Q Consensus 335 V 335 (474)
|
T Consensus 360 I 360 (1294)
T PRK11131 360 I 360 (1294)
T ss_pred E
Confidence 7
No 489
>PRK07773 replicative DNA helicase; Validated
Probab=78.56 E-value=3.6 Score=47.61 Aligned_cols=37 Identities=11% Similarity=0.086 Sum_probs=25.2
Q ss_pred hHHHHHHHhcC---Cc-EEEEcCCCcchhHHHHHHHHHHHHHH
Q 011963 207 GIEFWKCYSSA---KD-ILETSGSSSTIVQIAWIVATAADSIA 245 (474)
Q Consensus 207 Q~~~i~~~l~g---~d-vl~~A~TG~SGKTlaf~lp~l~~l~~ 245 (474)
.-..+..+..| .+ +++.|++| +||| +|.+-++.++..
T Consensus 203 G~~~LD~l~~Gl~~G~livIagrPg-~GKT-~fal~ia~~~a~ 243 (886)
T PRK07773 203 GFTELDAMTNGLHPGQLIIVAARPS-MGKT-TFGLDFARNCAI 243 (886)
T ss_pred ChhHhccccCCCCCCcEEEEEeCCC-CCcH-HHHHHHHHHHHH
Confidence 44556666555 24 66778999 9999 677777766543
No 490
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=78.43 E-value=11 Score=40.74 Aligned_cols=169 Identities=10% Similarity=0.029 Sum_probs=102.1
Q ss_pred HHHHHHhc-ccCCcEEEEEecCCCHH---HHHHHHhc--CCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-
Q 011963 272 VRSVCKPL-KAFGIHTVSLHPGAAID---HQITGLRS--CEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK- 344 (474)
Q Consensus 272 i~~~~~~l-~~~~i~v~~~~gg~~~~---~q~~~l~~--~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~- 344 (474)
|+..=+++ ...+.++.++||+.+.. .|...... +.++|+|||-.-= -+++| +++.+|+--.-....
T Consensus 369 I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIG------MGLNL-~IrRiiF~sl~Kysg~ 441 (700)
T KOG0953|consen 369 IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIG------MGLNL-NIRRIIFYSLIKYSGR 441 (700)
T ss_pred HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccc------ccccc-ceeEEEEeecccCCcc
Confidence 55555555 33355699999997743 33333433 4699999995311 12333 366666644432222
Q ss_pred ------hhHHHHHHhhCC--CCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHH
Q 011963 345 ------GDTLSLIRQSIS--GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILK 416 (474)
Q Consensus 345 ------~~~l~~Il~~l~--~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~ 416 (474)
..++.+|..... ...+-.++--|+..+....+...|..|+..|.-..- ..+.+.|+++.+..++ .-+..
T Consensus 442 e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eDL~~L~~~l~~p~epi~~agl-~pt~eqie~fa~~~Pd--~t~sn 518 (700)
T KOG0953|consen 442 ETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSEDLKLLKRILKRPVEPIKNAGL-WPTDEQIELFAYHLPD--ATPSN 518 (700)
T ss_pred cceeccHHHHHHHhhcccccccCCcCceEEEeeHhhHHHHHHHHhCCchHHHhccC-CccHHHHHHHHHhCCC--ccHHH
Confidence 677777776664 234456777888888888888888877533332221 4455566666666653 23333
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCC
Q 011963 417 GIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKG 457 (474)
Q Consensus 417 l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~g 457 (474)
|++++..+... -.+.|+.+......++.+|...-
T Consensus 519 Lld~f~~~~~~-------~~~fflc~~~~~k~va~liehi~ 552 (700)
T KOG0953|consen 519 LLDIFVKLCEV-------DGLFFLCNLDDFKFVAELIEHIE 552 (700)
T ss_pred HHHHHHHHHcc-------CCceEEecchhHHHHHHHHHhCC
Confidence 45555554433 33788888888889988886653
No 491
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=78.31 E-value=7.9 Score=40.36 Aligned_cols=19 Identities=5% Similarity=-0.071 Sum_probs=15.5
Q ss_pred HhcCCcEEEEcCCCcchhHH
Q 011963 214 YSSAKDILETSGSSSTIVQI 233 (474)
Q Consensus 214 ~l~g~dvl~~A~TG~SGKTl 233 (474)
+=.|.=.++.||.| +|||.
T Consensus 166 IGkGQR~lIvgppG-vGKTT 184 (416)
T PRK09376 166 IGKGQRGLIVAPPK-AGKTV 184 (416)
T ss_pred cccCceEEEeCCCC-CChhH
Confidence 34577888999999 99994
No 492
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=78.25 E-value=15 Score=37.95 Aligned_cols=43 Identities=12% Similarity=0.141 Sum_probs=32.5
Q ss_pred CCcceEEeccccccCC-----hhHHHHHHhhCCCCCcEEEEEccCCcc
Q 011963 329 SGVSLLVVDRLDSLSK-----GDTLSLIRQSISGKPHTVVFNDCLTYT 371 (474)
Q Consensus 329 ~~l~~lViDEad~ll~-----~~~l~~Il~~l~~~~q~llfSAT~~~~ 371 (474)
+..=+||+|-||.+-| .+.+-++-..++.+.-.++||+++++.
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 3455899999999998 555555666666666688999998874
No 493
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=78.20 E-value=14 Score=44.28 Aligned_cols=73 Identities=10% Similarity=0.163 Sum_probs=57.5
Q ss_pred cEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcC-CCcEEEEChHHHHHHHHcCCCCCCCcceEE
Q 011963 257 PFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSC-EPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (474)
Q Consensus 257 ~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~-~~~IlV~TP~rL~~ll~~~~~~l~~l~~lV 335 (474)
..+||.+|+++-+..+...+......++.+..+||+.+...|...+... +..|||+|. +-...+++.+|.++|
T Consensus 280 GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~~rkIVLATN------IAEtSLTIpgV~yVI 353 (1283)
T TIGR01967 280 GDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHSGRRIVLATN------VAETSLTVPGIHYVI 353 (1283)
T ss_pred CCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCCCceEEEecc------HHHhccccCCeeEEE
Confidence 4789999999999888888876533367889999999998888877653 258999996 345678888888855
No 494
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=78.15 E-value=8 Score=38.84 Aligned_cols=36 Identities=0% Similarity=0.076 Sum_probs=23.0
Q ss_pred CCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEE
Q 011963 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVV 363 (474)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~ll 363 (474)
...-+++|||+||.|-. ...+...+...|...-+++
T Consensus 91 ~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il 128 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIIL 128 (313)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 35678999999999875 5555555554444444443
No 495
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=78.10 E-value=14 Score=41.75 Aligned_cols=18 Identities=17% Similarity=0.075 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCcchhHHH
Q 011963 216 SAKDILETSGSSSTIVQIA 234 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (474)
.++.+++..|+| +|||..
T Consensus 211 ~~~giLL~GppG-tGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPG-TGKTLL 228 (733)
T ss_pred CCceEEEECCCC-CChHHH
Confidence 456899999999 999953
No 496
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=78.09 E-value=5.8 Score=42.81 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=37.6
Q ss_pred hHHHHHHHhcC-----CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 207 GIEFWKCYSSA-----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 207 Q~~~i~~~l~g-----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
-...+..++.| .-+++..++| +|||. |++-++..... .+-.++|++- -+-..++.+.+..+
T Consensus 258 Gi~~lD~~l~GG~~~g~~~li~G~~G-~GKT~-l~~~~~~~~~~---------~g~~~~yis~-e~~~~~i~~~~~~~ 323 (509)
T PRK09302 258 GVPDLDEMLGGGFFRGSIILVSGATG-TGKTL-LASKFAEAACR---------RGERCLLFAF-EESRAQLIRNARSW 323 (509)
T ss_pred CcHHHHHhhcCCCCCCcEEEEEcCCC-CCHHH-HHHHHHHHHHh---------CCCcEEEEEe-cCCHHHHHHHHHHc
Confidence 44566676663 4677889999 99995 43444433322 2456777753 44566776666655
No 497
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=78.06 E-value=8 Score=45.45 Aligned_cols=72 Identities=13% Similarity=0.080 Sum_probs=54.4
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+..+||.+.||.-+.++...+... |+.+..++||.+.... ...+..+.+.|||||-- -..++|+.+|+
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~---Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdA------FGMGIDkPDVR 750 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEF---GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVA------FGMGINKPDVR 750 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHC---CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEech------hhcCCCccCCc
Confidence 346789999999988888776654 8899999999986554 33445567999999952 23578888888
Q ss_pred eEEe
Q 011963 333 LLVV 336 (474)
Q Consensus 333 ~lVi 336 (474)
++|-
T Consensus 751 ~VIH 754 (1195)
T PLN03137 751 FVIH 754 (1195)
T ss_pred EEEE
Confidence 8874
No 498
>CHL00095 clpC Clp protease ATP binding subunit
Probab=78.02 E-value=5.1 Score=45.99 Aligned_cols=35 Identities=9% Similarity=-0.126 Sum_probs=22.6
Q ss_pred cCCCchhhHHHHHHHhcC---CcEEEEcCCCcchhHHHH
Q 011963 200 PLFVNSWGIEFWKCYSSA---KDILETSGSSSTIVQIAW 235 (474)
Q Consensus 200 pi~~~~~Q~~~i~~~l~g---~dvl~~A~TG~SGKTlaf 235 (474)
||..+.-+..-+-.++.. .++|+..|.| +|||...
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~~n~lL~G~pG-vGKTal~ 217 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTKNNPILIGEPG-VGKTAIA 217 (821)
T ss_pred CCCCcHHHHHHHHHHHcccccCCeEEECCCC-CCHHHHH
Confidence 444444344444444443 4999999999 9999654
No 499
>PRK09354 recA recombinase A; Provisional
Probab=77.87 E-value=8.8 Score=39.33 Aligned_cols=50 Identities=8% Similarity=-0.051 Sum_probs=30.1
Q ss_pred HHHHHHhc------CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHH
Q 011963 209 EFWKCYSS------AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (474)
Q Consensus 209 ~~i~~~l~------g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa 269 (474)
..+..++. |+=+.+..|.| ||||. +.+.++..... .+-.++||..-..+-
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~G-sGKTt-Lal~~~~~~~~---------~G~~~~yId~E~s~~ 101 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPES-SGKTT-LALHAIAEAQK---------AGGTAAFIDAEHALD 101 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCC-CCHHH-HHHHHHHHHHH---------cCCcEEEECCccchH
Confidence 44455555 34567889999 99995 44444433332 355788886544443
No 500
>PRK13766 Hef nuclease; Provisional
Probab=77.84 E-value=17 Score=41.28 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=57.3
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecC--------CCHHHH---HHHHhcCCCcEEEEChHHHHHHHHc
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPG--------AAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSL 323 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg--------~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~ 323 (474)
.+.++||.+.++.-+.++++.+... |+.+..++|. .+...+ ...+..+.++|||+|. +-.
T Consensus 364 ~~~kvlIF~~~~~t~~~L~~~L~~~---~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~------~~~ 434 (773)
T PRK13766 364 PDSRIIVFTQYRDTAEKIVDLLEKE---GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTS------VAE 434 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHhC---CCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECC------hhh
Confidence 4669999999999999999988544 6777777775 443322 3445566799999997 224
Q ss_pred CCCCCCCcceEEecccc
Q 011963 324 KAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 324 ~~~~l~~l~~lViDEad 340 (474)
.++++..++++|+=+.+
T Consensus 435 eGldi~~~~~VI~yd~~ 451 (773)
T PRK13766 435 EGLDIPSVDLVIFYEPV 451 (773)
T ss_pred cCCCcccCCEEEEeCCC
Confidence 57888999999986654
Done!