Query 011963
Match_columns 474
No_of_seqs 357 out of 1737
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 18:53:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011963.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011963hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 3.7E-45 1.3E-49 382.3 29.8 272 182-473 63-348 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 1.1E-40 3.9E-45 344.0 29.1 276 182-473 22-324 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 1.7E-40 5.7E-45 342.6 26.6 269 182-473 44-324 (410)
4 1xti_A Probable ATP-dependent 100.0 1.5E-38 5E-43 325.2 30.6 270 182-473 15-298 (391)
5 3eiq_A Eukaryotic initiation f 100.0 6.4E-39 2.2E-43 330.3 26.8 270 182-473 47-328 (414)
6 3fmp_B ATP-dependent RNA helic 100.0 4.6E-40 1.6E-44 347.3 16.1 266 182-473 99-381 (479)
7 3fe2_A Probable ATP-dependent 100.0 2.9E-39 1E-43 311.3 19.9 201 182-392 36-240 (242)
8 3sqw_A ATP-dependent RNA helic 100.0 8.9E-39 3E-43 345.7 25.2 279 182-473 28-339 (579)
9 1s2m_A Putative ATP-dependent 100.0 7.3E-38 2.5E-42 321.5 28.6 267 182-473 28-306 (400)
10 3i5x_A ATP-dependent RNA helic 100.0 2.4E-38 8.3E-43 340.5 25.9 279 182-473 79-390 (563)
11 3fmo_B ATP-dependent RNA helic 100.0 4.8E-39 1.6E-43 320.4 17.3 191 182-390 99-298 (300)
12 3fht_A ATP-dependent RNA helic 100.0 4.9E-38 1.7E-42 323.2 24.1 266 182-473 32-314 (412)
13 3iuy_A Probable ATP-dependent 100.0 2.1E-38 7.2E-43 302.1 18.6 198 182-388 27-227 (228)
14 3pey_A ATP-dependent RNA helic 100.0 2.4E-37 8.3E-42 315.6 24.1 265 182-473 12-291 (395)
15 1fuu_A Yeast initiation factor 100.0 4E-38 1.4E-42 321.9 17.9 268 182-473 28-307 (394)
16 1wrb_A DJVLGB; RNA helicase, D 100.0 2.1E-37 7.2E-42 300.0 15.6 214 182-404 30-253 (253)
17 3ly5_A ATP-dependent RNA helic 100.0 6.8E-37 2.3E-41 298.8 18.8 193 182-384 61-258 (262)
18 3ber_A Probable ATP-dependent 100.0 1.7E-36 5.9E-41 293.8 21.4 194 182-390 50-248 (249)
19 1hv8_A Putative ATP-dependent 100.0 9.9E-36 3.4E-40 300.7 27.0 261 182-473 13-286 (367)
20 1vec_A ATP-dependent RNA helic 100.0 2.4E-36 8.3E-41 282.7 20.8 189 182-384 10-203 (206)
21 3bor_A Human initiation factor 100.0 5E-37 1.7E-41 294.9 15.6 195 182-390 37-235 (237)
22 1q0u_A Bstdead; DEAD protein, 100.0 1E-36 3.5E-41 288.9 16.5 195 182-391 11-213 (219)
23 2oxc_A Probable ATP-dependent 100.0 3.2E-36 1.1E-40 287.8 19.0 192 182-389 31-228 (230)
24 2pl3_A Probable ATP-dependent 100.0 7.1E-36 2.4E-40 286.1 20.1 198 182-391 32-234 (236)
25 1t6n_A Probable ATP-dependent 100.0 1.3E-35 4.3E-40 281.1 20.4 193 182-388 21-219 (220)
26 3dkp_A Probable ATP-dependent 100.0 1.8E-36 6.3E-41 291.8 14.4 198 182-392 36-243 (245)
27 2gxq_A Heat resistant RNA depe 100.0 1.7E-35 5.9E-40 276.9 18.3 196 182-390 8-206 (207)
28 3oiy_A Reverse gyrase helicase 100.0 3.6E-35 1.2E-39 303.9 21.9 252 184-473 8-295 (414)
29 1qde_A EIF4A, translation init 100.0 1.1E-35 3.9E-40 282.0 16.7 194 182-391 21-218 (224)
30 2z0m_A 337AA long hypothetical 100.0 1.8E-34 6E-39 288.4 25.9 256 182-473 1-264 (337)
31 3fho_A ATP-dependent RNA helic 100.0 1.2E-34 3.9E-39 308.8 18.1 265 182-473 126-405 (508)
32 2v1x_A ATP-dependent DNA helic 100.0 7.4E-33 2.5E-37 299.5 29.4 261 182-473 28-315 (591)
33 4ddu_A Reverse gyrase; topoiso 100.0 8.1E-34 2.8E-38 325.5 22.0 251 185-473 66-352 (1104)
34 3l9o_A ATP-dependent RNA helic 100.0 3E-33 1E-37 320.8 18.9 242 183-459 170-467 (1108)
35 1tf5_A Preprotein translocase 100.0 6.6E-33 2.3E-37 303.3 19.6 240 192-461 79-460 (844)
36 1gku_B Reverse gyrase, TOP-RG; 100.0 3.2E-33 1.1E-37 320.2 14.2 250 184-473 44-317 (1054)
37 1oyw_A RECQ helicase, ATP-depe 100.0 3.2E-31 1.1E-35 283.2 26.8 254 182-473 9-284 (523)
38 2fsf_A Preprotein translocase 100.0 2.6E-32 8.9E-37 297.9 17.3 143 193-357 71-240 (853)
39 2ykg_A Probable ATP-dependent 100.0 1.5E-31 5.3E-36 294.4 18.0 171 187-369 3-184 (696)
40 3tbk_A RIG-I helicase domain; 100.0 3E-30 1E-34 274.9 25.6 160 204-370 6-176 (555)
41 4a2p_A RIG-I, retinoic acid in 100.0 1.1E-30 3.6E-35 279.0 21.5 166 193-370 3-178 (556)
42 1nkt_A Preprotein translocase 100.0 4.3E-31 1.5E-35 288.7 16.1 241 193-461 108-488 (922)
43 2p6r_A Afuhel308 helicase; pro 100.0 3.9E-30 1.3E-34 284.0 22.5 240 179-455 7-264 (702)
44 2zj8_A DNA helicase, putative 100.0 1.8E-30 6.3E-35 287.4 16.9 238 182-455 8-259 (720)
45 4a2q_A RIG-I, retinoic acid in 100.0 3.5E-29 1.2E-33 280.1 25.0 167 192-370 243-419 (797)
46 2va8_A SSO2462, SKI2-type heli 100.0 3.1E-29 1.1E-33 277.3 23.2 238 182-456 15-275 (715)
47 2xgj_A ATP-dependent RNA helic 100.0 3.2E-28 1.1E-32 277.1 25.1 237 192-464 82-374 (1010)
48 4f92_B U5 small nuclear ribonu 100.0 1.8E-28 6.2E-33 290.7 22.5 250 182-454 911-1176(1724)
49 1wp9_A ATP-dependent RNA helic 100.0 7.6E-27 2.6E-31 242.8 30.8 166 196-374 3-172 (494)
50 4a2w_A RIG-I, retinoic acid in 100.0 3.1E-28 1.1E-32 276.4 21.7 166 192-369 243-418 (936)
51 4a4z_A Antiviral helicase SKI2 100.0 7.9E-28 2.7E-32 273.7 23.7 156 204-380 41-199 (997)
52 4f92_B U5 small nuclear ribonu 100.0 9.5E-28 3.2E-32 284.6 21.0 248 193-455 75-339 (1724)
53 4gl2_A Interferon-induced heli 100.0 5.4E-28 1.8E-32 266.2 16.0 162 203-370 8-193 (699)
54 1gm5_A RECG; helicase, replica 99.9 1.5E-26 5.1E-31 256.2 21.2 252 185-473 357-637 (780)
55 2jlq_A Serine protease subunit 99.9 2.9E-27 9.8E-32 248.2 12.7 223 194-473 1-232 (451)
56 2whx_A Serine protease/ntpase/ 99.9 1.2E-27 4.1E-32 259.8 5.9 236 182-473 157-399 (618)
57 2eyq_A TRCF, transcription-rep 99.9 3.4E-25 1.2E-29 255.5 25.4 244 192-473 599-862 (1151)
58 3b6e_A Interferon-induced heli 99.9 2.9E-25 9.9E-30 208.1 13.5 164 193-367 29-216 (216)
59 2oca_A DAR protein, ATP-depend 99.9 6.8E-25 2.3E-29 232.9 17.6 248 197-473 113-395 (510)
60 2wv9_A Flavivirin protease NS2 99.9 4.6E-27 1.6E-31 257.1 -0.6 230 189-473 202-454 (673)
61 3llm_A ATP-dependent RNA helic 99.9 1.3E-24 4.5E-29 208.2 16.3 172 190-384 54-232 (235)
62 2ipc_A Preprotein translocase 99.9 3.7E-23 1.3E-27 225.7 27.8 130 193-344 76-216 (997)
63 3o8b_A HCV NS3 protease/helica 99.9 8.5E-25 2.9E-29 236.8 12.7 198 207-461 222-424 (666)
64 3h1t_A Type I site-specific re 99.9 3.2E-24 1.1E-28 232.0 15.8 256 201-473 177-494 (590)
65 1yks_A Genome polyprotein [con 99.9 4.2E-26 1.4E-30 238.6 0.9 201 213-473 4-221 (440)
66 2fwr_A DNA repair protein RAD2 99.9 1.7E-23 6E-28 219.9 19.8 251 183-473 61-392 (472)
67 2xau_A PRE-mRNA-splicing facto 99.9 5.7E-23 1.9E-27 228.3 20.0 256 182-472 79-361 (773)
68 2v6i_A RNA helicase; membrane, 99.9 4.8E-23 1.6E-27 214.9 15.5 208 216-473 1-215 (431)
69 2z83_A Helicase/nucleoside tri 99.9 7.6E-24 2.6E-28 222.6 9.6 211 211-473 15-234 (459)
70 1rif_A DAR protein, DNA helica 99.9 4.5E-22 1.5E-26 195.6 11.5 153 205-375 116-269 (282)
71 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 5.3E-21 1.8E-25 217.1 15.7 156 201-371 270-441 (1038)
72 3rc3_A ATP-dependent RNA helic 99.8 4E-20 1.4E-24 201.9 9.6 212 207-473 145-368 (677)
73 1z63_A Helicase of the SNF2/RA 99.8 3.4E-18 1.2E-22 180.8 20.4 147 203-370 38-189 (500)
74 2fz4_A DNA repair protein RAD2 99.8 2.3E-18 7.9E-23 165.2 17.2 155 185-371 63-231 (237)
75 3dmq_A RNA polymerase-associat 99.7 1.8E-16 6.2E-21 180.3 17.3 157 200-369 151-317 (968)
76 3mwy_W Chromo domain-containin 99.7 7.5E-16 2.6E-20 172.2 20.9 155 201-368 235-405 (800)
77 3crv_A XPD/RAD3 related DNA he 99.7 1.3E-16 4.3E-21 171.3 12.4 125 205-344 6-187 (551)
78 3jux_A Protein translocase sub 99.7 4.7E-15 1.6E-19 159.6 22.1 235 194-461 73-502 (822)
79 1z3i_X Similar to RAD54-like; 99.7 1.4E-14 4.8E-19 158.2 26.3 158 203-368 56-230 (644)
80 2vl7_A XPD; helicase, unknown 99.6 2.3E-15 7.8E-20 161.1 9.0 128 193-344 4-189 (540)
81 1c4o_A DNA nucleotide excision 99.3 1.5E-11 5.3E-16 134.4 18.1 101 357-473 379-487 (664)
82 2d7d_A Uvrabc system protein B 99.2 5.3E-10 1.8E-14 122.2 19.8 72 194-279 4-80 (661)
83 1w36_D RECD, exodeoxyribonucle 99.1 6.6E-11 2.3E-15 128.2 8.6 143 205-367 152-298 (608)
84 4a15_A XPD helicase, ATP-depen 99.0 3.2E-10 1.1E-14 123.0 8.6 79 205-293 6-89 (620)
85 2p6n_A ATP-dependent RNA helic 98.3 5.4E-07 1.9E-11 82.9 6.5 87 376-473 8-102 (191)
86 2rb4_A ATP-dependent RNA helic 98.1 6.8E-06 2.3E-10 74.0 8.6 72 395-473 3-82 (175)
87 3upu_A ATP-dependent DNA helic 98.1 8.6E-05 2.9E-09 77.4 17.1 222 192-458 20-277 (459)
88 1t5i_A C_terminal domain of A 98.0 1.4E-05 4.9E-10 71.8 8.5 70 396-473 2-79 (172)
89 2hjv_A ATP-dependent RNA helic 98.0 1.8E-05 6.1E-10 70.4 8.4 71 395-473 5-83 (163)
90 1fuk_A Eukaryotic initiation f 97.9 2.3E-05 7.9E-10 69.8 8.1 69 398-473 2-78 (165)
91 3lfu_A DNA helicase II; SF1 he 97.9 0.00056 1.9E-08 73.9 20.2 75 207-290 14-91 (647)
92 3e1s_A Exodeoxyribonuclease V, 97.9 7.2E-05 2.4E-09 80.2 11.9 127 201-366 188-314 (574)
93 2gk6_A Regulator of nonsense t 97.8 0.00026 8.9E-09 76.7 14.8 67 203-279 181-247 (624)
94 2jgn_A DBX, DDX3, ATP-dependen 97.8 5.7E-05 1.9E-09 68.8 8.0 73 394-473 14-94 (185)
95 2xzl_A ATP-dependent helicase 97.7 0.00043 1.5E-08 77.0 16.3 67 203-279 361-427 (802)
96 2wjy_A Regulator of nonsense t 97.6 0.0005 1.7E-08 76.5 14.7 68 202-279 356-423 (800)
97 4b3f_X DNA-binding protein smu 97.4 0.00048 1.6E-08 74.8 11.3 66 203-279 190-256 (646)
98 2yjt_D ATP-dependent RNA helic 96.5 2.4E-05 8.4E-10 70.0 0.0 69 398-473 2-78 (170)
99 3i32_A Heat resistant RNA depe 97.3 0.00043 1.5E-08 68.1 7.5 67 399-473 2-76 (300)
100 2o0j_A Terminase, DNA packagin 97.3 0.0028 9.6E-08 64.3 13.5 142 199-365 160-311 (385)
101 1uaa_A REP helicase, protein ( 97.2 0.0079 2.7E-07 65.4 17.4 78 205-291 5-86 (673)
102 1pjr_A PCRA; DNA repair, DNA r 97.1 0.021 7.2E-07 62.7 20.0 76 207-291 16-94 (724)
103 3eaq_A Heat resistant RNA depe 97.1 0.00063 2.2E-08 63.1 6.4 67 399-473 5-79 (212)
104 3cpe_A Terminase, DNA packagin 96.9 0.011 3.7E-07 63.5 14.8 143 199-365 160-311 (592)
105 3ec2_A DNA replication protein 96.4 0.032 1.1E-06 49.6 11.8 41 330-371 100-145 (180)
106 3vkw_A Replicase large subunit 96.1 0.023 7.9E-07 58.5 10.3 103 220-364 164-266 (446)
107 2hjv_A ATP-dependent RNA helic 95.9 0.072 2.5E-06 46.6 11.7 74 256-338 35-111 (163)
108 1fuk_A Eukaryotic initiation f 95.5 0.14 4.6E-06 44.9 11.6 74 256-338 30-106 (165)
109 3eaq_A Heat resistant RNA depe 95.4 0.1 3.5E-06 47.9 11.0 72 256-336 31-105 (212)
110 2rb4_A ATP-dependent RNA helic 95.4 0.084 2.9E-06 46.7 10.1 74 256-338 34-110 (175)
111 2p6n_A ATP-dependent RNA helic 95.2 0.15 5.2E-06 46.0 11.3 72 256-336 54-128 (191)
112 1t5i_A C_terminal domain of A 95.1 0.13 4.4E-06 45.6 10.1 74 256-338 31-107 (172)
113 3bos_A Putative DNA replicatio 95.0 0.025 8.5E-07 52.1 5.5 18 216-234 51-68 (242)
114 1l8q_A Chromosomal replication 95.0 0.099 3.4E-06 51.0 10.0 39 331-370 99-142 (324)
115 1xx6_A Thymidine kinase; NESG, 95.0 0.082 2.8E-06 48.1 8.6 106 217-364 8-114 (191)
116 1z5z_A Helicase of the SNF2/RA 94.8 0.046 1.6E-06 52.5 6.8 59 410-473 94-161 (271)
117 2orw_A Thymidine kinase; TMTK, 94.7 0.1 3.5E-06 47.0 8.6 39 216-265 2-40 (184)
118 2chg_A Replication factor C sm 94.6 0.26 9E-06 44.1 11.1 37 329-365 101-139 (226)
119 2b8t_A Thymidine kinase; deoxy 94.4 0.28 9.5E-06 45.7 11.1 110 217-366 12-124 (223)
120 3i5x_A ATP-dependent RNA helic 94.4 0.41 1.4E-05 50.3 13.7 79 255-339 338-419 (563)
121 3te6_A Regulatory protein SIR3 94.4 0.34 1.2E-05 47.6 12.1 41 330-370 132-175 (318)
122 3kl4_A SRP54, signal recogniti 94.0 0.42 1.4E-05 49.0 12.4 52 329-380 178-235 (433)
123 1a5t_A Delta prime, HOLB; zinc 93.9 0.31 1E-05 48.0 10.7 30 205-235 5-41 (334)
124 3sqw_A ATP-dependent RNA helic 93.8 0.63 2.1E-05 49.3 13.8 79 255-339 287-368 (579)
125 3i32_A Heat resistant RNA depe 93.7 0.31 1E-05 47.5 10.2 72 256-336 28-102 (300)
126 2kjq_A DNAA-related protein; s 93.6 0.11 3.7E-06 45.1 6.2 54 329-382 82-142 (149)
127 2jgn_A DBX, DDX3, ATP-dependen 93.6 0.19 6.5E-06 45.1 8.0 72 256-336 46-120 (185)
128 2v1u_A Cell division control p 93.5 0.53 1.8E-05 46.3 11.8 17 217-234 44-60 (387)
129 2z4s_A Chromosomal replication 93.4 0.37 1.3E-05 49.4 10.7 37 330-366 194-235 (440)
130 2j9r_A Thymidine kinase; TK1, 92.9 0.18 6.3E-06 46.6 6.8 39 217-266 28-66 (214)
131 3n70_A Transport activator; si 92.9 0.25 8.5E-06 42.2 7.3 31 333-363 79-111 (145)
132 3syl_A Protein CBBX; photosynt 92.7 0.29 1E-05 47.0 8.3 17 218-235 68-84 (309)
133 1njg_A DNA polymerase III subu 92.7 0.59 2E-05 42.2 10.0 35 330-364 126-162 (250)
134 3u4q_A ATP-dependent helicase/ 92.5 0.12 4.3E-06 60.0 6.3 65 207-278 15-79 (1232)
135 3fht_A ATP-dependent RNA helic 92.5 0.66 2.2E-05 46.1 10.9 73 256-337 266-341 (412)
136 1w4r_A Thymidine kinase; type 92.4 0.18 6.3E-06 45.9 6.0 39 216-265 19-57 (195)
137 2i4i_A ATP-dependent RNA helic 92.4 0.51 1.7E-05 47.1 10.0 73 255-336 275-350 (417)
138 2qby_B CDC6 homolog 3, cell di 92.4 0.36 1.2E-05 47.8 8.7 16 218-234 46-61 (384)
139 2d7d_A Uvrabc system protein B 92.3 0.56 1.9E-05 50.8 10.7 79 256-343 445-526 (661)
140 3pey_A ATP-dependent RNA helic 92.3 2.5 8.4E-05 41.4 14.7 80 255-343 242-324 (395)
141 2w58_A DNAI, primosome compone 92.2 0.66 2.3E-05 41.5 9.6 16 218-234 55-70 (202)
142 2qby_A CDC6 homolog 1, cell di 92.0 0.46 1.6E-05 46.7 8.9 17 217-234 45-61 (386)
143 3dm5_A SRP54, signal recogniti 91.9 0.89 3E-05 46.7 11.1 17 218-235 101-117 (443)
144 1d2n_A N-ethylmaleimide-sensit 91.7 0.92 3.1E-05 42.8 10.4 17 218-235 65-81 (272)
145 2zpa_A Uncharacterized protein 91.7 0.37 1.3E-05 52.1 8.2 109 207-370 180-290 (671)
146 2j0s_A ATP-dependent RNA helic 91.6 1 3.4E-05 44.9 11.0 72 256-336 276-350 (410)
147 1iqp_A RFCS; clamp loader, ext 91.3 0.79 2.7E-05 44.0 9.6 36 329-364 109-146 (327)
148 1c4o_A DNA nucleotide excision 91.3 0.9 3.1E-05 49.2 10.9 79 256-343 439-520 (664)
149 4a1f_A DNAB helicase, replicat 91.2 0.26 9E-06 48.8 6.0 142 209-367 34-205 (338)
150 2p65_A Hypothetical protein PF 91.2 1.3 4.5E-05 38.2 10.2 17 217-234 43-59 (187)
151 1s2m_A Putative ATP-dependent 91.1 0.96 3.3E-05 44.8 10.3 72 256-336 258-332 (400)
152 2db3_A ATP-dependent RNA helic 91.0 0.78 2.7E-05 46.7 9.7 70 258-336 302-374 (434)
153 1sxj_D Activator 1 41 kDa subu 90.9 0.82 2.8E-05 44.5 9.4 36 330-365 133-170 (353)
154 1hqc_A RUVB; extended AAA-ATPa 90.7 0.88 3E-05 43.8 9.3 26 329-354 89-116 (324)
155 2qgz_A Helicase loader, putati 90.5 0.74 2.5E-05 44.8 8.6 18 217-235 152-169 (308)
156 1xti_A Probable ATP-dependent 90.3 0.93 3.2E-05 44.6 9.2 75 256-339 250-327 (391)
157 1hv8_A Putative ATP-dependent 90.2 0.68 2.3E-05 45.0 8.1 74 255-337 237-313 (367)
158 1fnn_A CDC6P, cell division co 90.2 0.28 9.7E-06 48.5 5.3 15 219-234 46-60 (389)
159 1oyw_A RECQ helicase, ATP-depe 90.2 0.91 3.1E-05 47.6 9.5 73 256-337 236-311 (523)
160 2v1x_A ATP-dependent DNA helic 90.1 0.88 3E-05 48.5 9.3 72 256-336 267-341 (591)
161 3e2i_A Thymidine kinase; Zn-bi 89.7 0.9 3.1E-05 42.0 7.8 96 216-352 27-125 (219)
162 3u61_B DNA polymerase accessor 89.6 0.86 3E-05 44.1 8.2 37 329-365 104-143 (324)
163 1sxj_B Activator 1 37 kDa subu 89.6 0.99 3.4E-05 43.2 8.6 36 330-365 107-144 (323)
164 2yjt_D ATP-dependent RNA helic 89.1 0.066 2.2E-06 47.2 0.0 74 256-338 30-106 (170)
165 2dr3_A UPF0273 protein PH0284; 89.3 2.4 8.3E-05 38.7 10.7 52 216-279 22-73 (247)
166 2oca_A DAR protein, ATP-depend 89.1 2.9 0.0001 43.1 12.3 79 256-342 347-428 (510)
167 1wp9_A ATP-dependent RNA helic 88.8 2 6.9E-05 43.0 10.6 75 255-338 360-445 (494)
168 3bh0_A DNAB-like replicative h 88.8 0.79 2.7E-05 44.7 7.2 53 209-272 56-115 (315)
169 1yks_A Genome polyprotein [con 88.8 0.51 1.8E-05 48.3 6.1 70 256-336 177-246 (440)
170 2orv_A Thymidine kinase; TP4A 88.7 2 6.7E-05 40.2 9.5 39 216-265 18-56 (234)
171 1sxj_C Activator 1 40 kDa subu 88.4 1.3 4.4E-05 43.4 8.5 37 329-365 109-147 (340)
172 3pfi_A Holliday junction ATP-d 88.3 1.7 5.8E-05 42.2 9.4 16 218-234 56-71 (338)
173 2eyq_A TRCF, transcription-rep 88.1 2.8 9.6E-05 48.3 12.2 93 255-355 811-906 (1151)
174 1g5t_A COB(I)alamin adenosyltr 87.9 0.6 2.1E-05 42.5 5.3 48 329-376 119-171 (196)
175 2r6a_A DNAB helicase, replicat 87.9 1.8 6.3E-05 44.3 9.6 45 209-263 191-239 (454)
176 3vfd_A Spastin; ATPase, microt 87.8 2.5 8.7E-05 42.1 10.5 17 217-234 148-164 (389)
177 2bjv_A PSP operon transcriptio 87.8 1.3 4.4E-05 41.5 7.8 19 215-234 27-45 (265)
178 1sxj_A Activator 1 95 kDa subu 87.2 0.78 2.7E-05 48.0 6.4 38 330-369 148-190 (516)
179 3hjh_A Transcription-repair-co 87.1 3.3 0.00011 42.9 11.0 87 216-318 13-114 (483)
180 3eiq_A Eukaryotic initiation f 85.8 0.95 3.2E-05 45.0 5.9 72 256-336 280-354 (414)
181 1jr3_A DNA polymerase III subu 85.7 4.3 0.00015 39.6 10.7 38 329-367 118-157 (373)
182 2wv9_A Flavivirin protease NS2 85.6 1.8 6.2E-05 46.9 8.4 70 256-336 410-479 (673)
183 3rc3_A ATP-dependent RNA helic 85.5 2.3 8E-05 46.0 9.2 75 258-342 322-401 (677)
184 2q6t_A DNAB replication FORK h 85.4 5.9 0.0002 40.3 11.8 118 209-343 188-323 (444)
185 2v6i_A RNA helicase; membrane, 85.3 1.2 4.1E-05 45.4 6.5 68 256-334 171-238 (431)
186 3pvs_A Replication-associated 85.2 2.6 8.9E-05 43.2 9.0 21 213-234 44-66 (447)
187 3uk6_A RUVB-like 2; hexameric 84.9 4.2 0.00014 39.7 10.2 18 217-235 70-87 (368)
188 3h75_A Periplasmic sugar-bindi 84.8 20 0.00068 34.4 15.0 38 419-460 194-231 (350)
189 3t15_A Ribulose bisphosphate c 84.5 1.2 4.2E-05 42.8 5.8 16 218-234 37-52 (293)
190 2qp9_X Vacuolar protein sortin 84.4 3.9 0.00013 40.4 9.7 18 217-235 84-101 (355)
191 2xau_A PRE-mRNA-splicing facto 84.0 3.2 0.00011 45.6 9.6 75 256-336 303-393 (773)
192 2jlq_A Serine protease subunit 84.0 2.2 7.4E-05 43.7 7.8 69 256-335 188-256 (451)
193 2zan_A Vacuolar protein sortin 83.7 4.6 0.00016 41.2 10.1 18 217-235 167-184 (444)
194 3tbk_A RIG-I helicase domain; 83.0 2.9 9.8E-05 43.1 8.4 75 256-336 389-476 (555)
195 2cvh_A DNA repair and recombin 82.8 6.6 0.00023 34.9 9.9 15 330-344 105-119 (220)
196 1xwi_A SKD1 protein; VPS4B, AA 82.4 7 0.00024 37.9 10.5 16 218-234 46-61 (322)
197 4gl2_A Interferon-induced heli 82.1 1 3.6E-05 48.5 4.7 75 256-336 400-488 (699)
198 2gno_A DNA polymerase III, gam 82.0 6 0.00021 38.2 9.7 43 328-371 80-124 (305)
199 4b4t_J 26S protease regulatory 82.0 13 0.00044 37.5 12.3 40 332-371 243-298 (405)
200 2z0m_A 337AA long hypothetical 81.5 3 0.0001 39.8 7.3 71 255-338 219-292 (337)
201 2whx_A Serine protease/ntpase/ 81.5 3.5 0.00012 44.2 8.4 69 256-335 355-423 (618)
202 1z5z_A Helicase of the SNF2/RA 81.2 7.7 0.00026 36.7 10.0 97 225-340 92-193 (271)
203 1w5s_A Origin recognition comp 81.1 1.9 6.4E-05 42.8 5.9 16 218-234 51-68 (412)
204 3oiy_A Reverse gyrase helicase 81.1 2.2 7.6E-05 42.6 6.4 72 256-339 252-329 (414)
205 1e9r_A Conjugal transfer prote 80.7 1.8 6.1E-05 43.9 5.6 45 215-270 51-95 (437)
206 3m6a_A ATP-dependent protease 80.0 3.7 0.00012 43.2 7.9 18 216-234 107-124 (543)
207 2ykg_A Probable ATP-dependent 79.8 2.3 7.8E-05 45.8 6.4 78 256-339 398-488 (696)
208 3cf0_A Transitional endoplasmi 79.2 6.1 0.00021 37.8 8.7 18 216-234 48-65 (301)
209 2z43_A DNA repair and recombin 79.0 5.5 0.00019 38.7 8.3 31 208-240 93-128 (324)
210 3eie_A Vacuolar protein sortin 78.1 6.3 0.00021 38.1 8.4 18 217-235 51-68 (322)
211 3dmq_A RNA polymerase-associat 76.8 8.3 0.00028 43.5 10.0 91 255-355 502-597 (968)
212 1q57_A DNA primase/helicase; d 76.5 3.8 0.00013 42.5 6.6 37 217-263 242-278 (503)
213 3hu3_A Transitional endoplasmi 76.4 4.7 0.00016 41.8 7.3 39 332-370 299-350 (489)
214 4a15_A XPD helicase, ATP-depen 76.1 9.8 0.00033 40.6 9.9 106 357-472 374-492 (620)
215 1gku_B Reverse gyrase, TOP-RG; 76.1 3.2 0.00011 47.4 6.4 74 256-340 275-352 (1054)
216 4b4t_L 26S protease subunit RP 75.5 17 0.00059 37.0 11.1 16 218-234 216-231 (437)
217 3o8b_A HCV NS3 protease/helica 75.3 2.9 9.9E-05 45.1 5.5 67 255-335 395-461 (666)
218 4a2p_A RIG-I, retinoic acid in 75.0 5.3 0.00018 41.2 7.3 77 255-337 389-478 (556)
219 3fmp_B ATP-dependent RNA helic 74.4 0.63 2.2E-05 47.8 0.0 71 256-335 333-406 (479)
220 3g1w_A Sugar ABC transporter; 73.8 56 0.0019 30.2 19.0 37 419-459 176-212 (305)
221 4a2q_A RIG-I, retinoic acid in 73.3 5.8 0.0002 43.6 7.4 77 255-337 630-719 (797)
222 3pxi_A Negative regulator of g 73.0 11 0.00038 41.1 9.6 23 332-354 581-605 (758)
223 4b4t_M 26S protease regulatory 72.8 15 0.0005 37.5 9.8 16 218-234 216-231 (434)
224 3fho_A ATP-dependent RNA helic 71.9 1.4 4.6E-05 45.9 1.8 74 256-338 357-433 (508)
225 2w00_A HSDR, R.ECOR124I; ATP-b 71.8 19 0.00066 40.8 11.4 77 255-337 536-674 (1038)
226 4b4t_I 26S protease regulatory 71.6 34 0.0011 34.8 12.0 16 218-234 217-232 (437)
227 3crv_A XPD/RAD3 related DNA he 71.3 20 0.00068 37.4 10.8 103 355-472 311-434 (551)
228 3mm4_A Histidine kinase homolo 71.3 35 0.0012 30.1 11.1 67 212-279 15-84 (206)
229 2z83_A Helicase/nucleoside tri 71.2 2.7 9.2E-05 43.1 3.9 69 256-335 190-258 (459)
230 3l49_A ABC sugar (ribose) tran 70.7 64 0.0022 29.5 13.7 41 418-459 176-216 (291)
231 1n0w_A DNA repair protein RAD5 70.3 6.4 0.00022 35.7 5.9 26 209-235 11-41 (243)
232 2l8b_A Protein TRAI, DNA helic 70.1 4.3 0.00015 36.4 4.4 117 207-367 39-158 (189)
233 2va8_A SSO2462, SKI2-type heli 70.1 12 0.00042 40.3 9.1 75 256-336 252-362 (715)
234 3cmu_A Protein RECA, recombina 68.7 8.6 0.00029 46.6 7.8 48 207-265 1411-1464(2050)
235 3h1t_A Type I site-specific re 68.1 21 0.00071 37.4 10.1 93 255-355 438-540 (590)
236 4ddu_A Reverse gyrase; topoiso 67.9 6.7 0.00023 44.9 6.6 74 256-341 309-388 (1104)
237 2jtq_A Phage shock protein E; 67.8 5.7 0.0002 30.0 4.3 27 433-459 41-67 (85)
238 4b4t_K 26S protease regulatory 67.7 29 0.001 35.1 10.7 16 218-234 207-222 (428)
239 2px0_A Flagellar biosynthesis 67.6 36 0.0012 32.4 10.9 41 329-369 181-225 (296)
240 1r6b_X CLPA protein; AAA+, N-t 67.4 6.2 0.00021 43.0 6.0 17 217-234 207-223 (758)
241 4a2w_A RIG-I, retinoic acid in 67.3 11 0.00036 42.5 7.9 79 255-339 630-721 (936)
242 3hr8_A Protein RECA; alpha and 67.2 3.3 0.00011 41.2 3.4 45 209-264 47-97 (356)
243 1fuu_A Yeast initiation factor 66.1 1.2 4.2E-05 43.7 0.0 72 256-336 259-333 (394)
244 4b4t_H 26S protease regulatory 65.9 35 0.0012 35.0 10.8 16 218-234 244-259 (467)
245 2j37_W Signal recognition part 65.8 80 0.0027 32.6 13.8 17 218-235 102-118 (504)
246 3gk5_A Uncharacterized rhodane 65.4 5.6 0.00019 31.8 3.9 29 433-461 55-83 (108)
247 2ffh_A Protein (FFH); SRP54, s 65.3 1.1E+02 0.0036 30.9 14.3 19 216-235 97-115 (425)
248 3co5_A Putative two-component 65.0 4.4 0.00015 34.1 3.3 21 213-234 23-43 (143)
249 2zj8_A DNA helicase, putative 64.3 11 0.00036 40.9 7.1 76 256-338 237-345 (720)
250 3iwh_A Rhodanese-like domain p 64.0 5.1 0.00018 32.0 3.4 29 433-461 56-84 (103)
251 2p6r_A Afuhel308 helicase; pro 63.7 16 0.00054 39.3 8.3 74 256-335 242-345 (702)
252 3kjx_A Transcriptional regulat 62.9 1E+02 0.0036 29.1 15.9 38 419-460 236-273 (344)
253 3foj_A Uncharacterized protein 62.9 6.3 0.00022 30.9 3.7 29 433-461 56-84 (100)
254 2zts_A Putative uncharacterize 62.7 9.4 0.00032 34.6 5.4 22 218-241 31-52 (251)
255 3cf2_A TER ATPase, transitiona 61.8 17 0.00059 40.0 8.1 16 218-234 239-254 (806)
256 3eme_A Rhodanese-like domain p 61.2 6.2 0.00021 31.1 3.4 29 433-461 56-84 (103)
257 3k9c_A Transcriptional regulat 60.6 1E+02 0.0035 28.2 14.4 39 418-460 173-211 (289)
258 3e3m_A Transcriptional regulat 60.3 1.2E+02 0.0041 28.9 16.1 38 419-460 239-276 (355)
259 3cmw_A Protein RECA, recombina 60.2 7.4 0.00025 46.5 5.1 123 207-371 1415-1570(1706)
260 3huu_A Transcription regulator 59.7 1.1E+02 0.0037 28.3 13.9 40 417-460 188-228 (305)
261 4ag6_A VIRB4 ATPase, type IV s 58.9 8.7 0.0003 38.1 4.8 43 216-269 34-76 (392)
262 3miz_A Putative transcriptiona 58.6 88 0.003 28.8 11.8 37 420-460 187-223 (301)
263 3nwn_A Kinesin-like protein KI 58.4 7 0.00024 38.8 3.9 25 210-235 96-122 (359)
264 3e70_C DPA, signal recognition 57.9 60 0.002 31.5 10.5 50 331-380 212-265 (328)
265 3cf2_A TER ATPase, transitiona 57.1 42 0.0014 36.9 10.2 40 332-371 572-627 (806)
266 4etp_A Kinesin-like protein KA 57.1 7.9 0.00027 39.1 4.1 25 210-235 132-158 (403)
267 1gm5_A RECG; helicase, replica 56.1 2.7 9.3E-05 46.3 0.4 93 256-355 578-681 (780)
268 1vma_A Cell division protein F 55.6 1.4E+02 0.0049 28.4 14.8 18 217-235 104-121 (306)
269 2i1q_A DNA repair and recombin 55.4 21 0.00072 34.2 6.8 25 208-233 84-113 (322)
270 3k4h_A Putative transcriptiona 55.2 1.2E+02 0.0042 27.5 14.2 39 418-460 180-218 (292)
271 3l9o_A ATP-dependent RNA helic 55.2 25 0.00087 40.2 8.3 74 256-335 441-553 (1108)
272 1qvr_A CLPB protein; coiled co 54.8 2E+02 0.0067 31.6 15.4 16 218-234 192-207 (854)
273 1bg2_A Kinesin; motor protein, 54.8 8.8 0.0003 37.5 3.9 25 210-235 69-95 (325)
274 3hix_A ALR3790 protein; rhodan 54.8 10 0.00036 30.0 3.7 29 433-461 52-81 (106)
275 3g5j_A Putative ATP/GTP bindin 54.5 15 0.00053 29.8 4.9 28 434-461 90-118 (134)
276 1ypw_A Transitional endoplasmi 54.4 22 0.00077 39.1 7.5 18 216-234 237-254 (806)
277 2xxa_A Signal recognition part 54.3 1.5E+02 0.0051 29.8 13.2 17 218-235 101-117 (433)
278 2nr8_A Kinesin-like protein KI 54.3 9 0.00031 38.0 3.9 25 210-235 95-121 (358)
279 2k0z_A Uncharacterized protein 54.2 11 0.00039 30.0 3.9 28 433-460 56-83 (110)
280 3dc4_A Kinesin-like protein NO 54.1 8.1 0.00028 38.1 3.5 25 210-235 86-112 (344)
281 3mwy_W Chromo domain-containin 54.0 61 0.0021 35.4 11.0 77 255-340 571-653 (800)
282 3h5o_A Transcriptional regulat 53.7 1.5E+02 0.005 27.9 14.9 38 419-460 228-265 (339)
283 3gbj_A KIF13B protein; kinesin 53.5 9.5 0.00033 37.8 3.9 25 210-235 84-110 (354)
284 3u06_A Protein claret segregat 53.5 8.3 0.00028 39.0 3.5 26 209-235 129-156 (412)
285 4a14_A Kinesin, kinesin-like p 53.4 9.4 0.00032 37.6 3.9 25 210-235 75-101 (344)
286 2y65_A Kinesin, kinesin heavy 53.4 9.5 0.00032 38.0 3.9 25 210-235 76-102 (365)
287 3t0q_A AGR253WP; kinesin, alph 53.3 8 0.00027 38.2 3.3 25 210-235 77-103 (349)
288 1p9r_A General secretion pathw 53.2 9.9 0.00034 38.5 4.1 27 207-234 155-183 (418)
289 2h58_A Kinesin-like protein KI 53.2 9.7 0.00033 37.3 3.9 25 210-235 72-98 (330)
290 3bgw_A DNAB-like replicative h 53.0 13 0.00044 37.9 4.9 44 209-263 185-232 (444)
291 1x88_A Kinesin-like protein KI 52.9 9.3 0.00032 37.9 3.7 25 210-235 80-106 (359)
292 3b6u_A Kinesin-like protein KI 52.8 9.8 0.00033 38.0 3.9 25 210-235 93-119 (372)
293 3g85_A Transcriptional regulat 52.8 1.1E+02 0.0038 27.8 11.3 39 418-460 176-214 (289)
294 4fn4_A Short chain dehydrogena 52.6 73 0.0025 29.6 9.8 83 215-315 5-93 (254)
295 1v8k_A Kinesin-like protein KI 52.6 9.8 0.00033 38.5 3.9 25 210-235 146-172 (410)
296 3v2g_A 3-oxoacyl-[acyl-carrier 52.5 62 0.0021 30.0 9.4 126 215-367 29-167 (271)
297 3d1p_A Putative thiosulfate su 52.4 19 0.00064 29.9 5.1 27 433-459 91-117 (139)
298 3sju_A Keto reductase; short-c 52.3 59 0.002 30.2 9.3 86 212-315 19-110 (279)
299 2vvg_A Kinesin-2; motor protei 52.3 10 0.00035 37.5 3.9 25 210-235 81-107 (350)
300 3cob_A Kinesin heavy chain-lik 52.2 8.7 0.0003 38.3 3.4 25 210-235 71-97 (369)
301 3lre_A Kinesin-like protein KI 52.0 10 0.00034 37.6 3.8 25 210-235 97-123 (355)
302 1t5c_A CENP-E protein, centrom 52.0 10 0.00035 37.4 3.9 25 210-235 69-95 (349)
303 2zfi_A Kinesin-like protein KI 51.9 10 0.00035 37.7 3.9 25 210-235 81-107 (366)
304 1goj_A Kinesin, kinesin heavy 51.1 10 0.00036 37.5 3.8 24 211-235 73-98 (355)
305 1gmx_A GLPE protein; transfera 51.1 10 0.00034 30.1 3.0 27 433-459 58-84 (108)
306 3tfo_A Putative 3-oxoacyl-(acy 50.8 58 0.002 30.1 8.9 83 215-315 2-90 (264)
307 1f9v_A Kinesin-like protein KA 50.4 8.8 0.0003 37.9 3.1 25 210-235 76-102 (347)
308 1ls1_A Signal recognition part 50.3 1.7E+02 0.0057 27.6 13.6 50 330-379 180-233 (295)
309 1wv9_A Rhodanese homolog TT165 50.2 11 0.00039 28.9 3.2 27 434-460 54-80 (94)
310 2oap_1 GSPE-2, type II secreti 50.0 14 0.00047 38.5 4.7 27 207-234 249-276 (511)
311 2wbe_C Bipolar kinesin KRP-130 50.0 10 0.00035 37.8 3.5 25 210-235 92-118 (373)
312 2fwr_A DNA repair protein RAD2 49.8 7.3 0.00025 39.5 2.5 71 255-339 348-421 (472)
313 2heh_A KIF2C protein; kinesin, 49.2 12 0.0004 37.6 3.7 25 210-235 126-152 (387)
314 3p32_A Probable GTPase RV1496/ 49.1 1.3E+02 0.0044 29.1 11.5 23 358-380 257-279 (355)
315 3gyb_A Transcriptional regulat 48.9 1.5E+02 0.0052 26.7 11.7 176 258-460 7-202 (280)
316 3bfn_A Kinesin-like protein KI 48.7 10 0.00035 38.0 3.3 23 212-235 92-116 (388)
317 3dbi_A Sugar-binding transcrip 48.3 1.8E+02 0.006 27.3 17.8 38 419-460 231-268 (338)
318 2qmh_A HPR kinase/phosphorylas 48.3 8.3 0.00028 35.1 2.3 17 216-233 33-49 (205)
319 1j8m_F SRP54, signal recogniti 48.2 1.8E+02 0.0062 27.4 12.4 18 217-235 98-115 (297)
320 2v3c_C SRP54, signal recogniti 48.2 38 0.0013 34.3 7.6 17 218-235 100-116 (432)
321 3qiv_A Short-chain dehydrogena 47.4 1.1E+02 0.0036 27.6 10.0 84 215-316 7-96 (253)
322 3io5_A Recombination and repai 47.4 32 0.0011 33.6 6.5 39 219-266 30-68 (333)
323 2owm_A Nckin3-434, related to 47.3 13 0.00045 38.0 3.9 25 210-235 128-154 (443)
324 2xgj_A ATP-dependent RNA helic 47.2 46 0.0016 37.6 8.7 94 256-356 343-482 (1010)
325 1xp8_A RECA protein, recombina 47.2 21 0.0007 35.4 5.2 36 218-264 75-110 (366)
326 3c3k_A Alanine racemase; struc 46.8 1.7E+02 0.0057 26.6 15.2 38 419-460 171-210 (285)
327 4e3z_A Putative oxidoreductase 46.7 72 0.0025 29.3 8.9 87 211-315 20-113 (272)
328 3l6u_A ABC-type sugar transpor 46.5 1.7E+02 0.0058 26.5 15.4 38 418-459 183-220 (293)
329 3u4q_B ATP-dependent helicase/ 46.2 15 0.00052 42.2 4.7 57 403-461 313-371 (1166)
330 1jbk_A CLPB protein; beta barr 46.2 14 0.00048 31.4 3.5 16 218-234 44-59 (195)
331 3ilm_A ALR3790 protein; rhodan 46.1 16 0.00055 30.7 3.7 27 433-459 56-82 (141)
332 2rep_A Kinesin-like protein KI 46.1 11 0.00037 37.7 2.9 25 210-235 107-133 (376)
333 3flh_A Uncharacterized protein 45.9 11 0.00037 30.9 2.5 29 433-461 71-101 (124)
334 2hsg_A Glucose-resistance amyl 45.6 1.9E+02 0.0066 26.9 14.6 38 419-460 228-265 (332)
335 2w0m_A SSO2452; RECA, SSPF, un 45.6 21 0.0007 31.7 4.6 16 217-233 23-38 (235)
336 1z63_A Helicase of the SNF2/RA 45.4 1.4E+02 0.0046 30.1 11.4 77 256-340 341-422 (500)
337 1tq1_A AT5G66040, senescence-a 45.3 12 0.0004 30.9 2.7 27 433-459 82-108 (129)
338 1z3i_X Similar to RAD54-like; 44.8 1.5E+02 0.005 31.4 11.9 76 256-340 416-497 (644)
339 3tjr_A Short chain dehydrogena 44.7 94 0.0032 29.2 9.5 84 215-316 29-118 (301)
340 3svt_A Short-chain type dehydr 44.7 1.1E+02 0.0038 28.2 9.9 86 215-315 9-100 (281)
341 2yhs_A FTSY, cell division pro 44.6 1.1E+02 0.0038 31.6 10.4 50 331-380 376-435 (503)
342 2r44_A Uncharacterized protein 44.3 13 0.00045 35.7 3.2 23 211-234 40-62 (331)
343 3cmu_A Protein RECA, recombina 44.3 34 0.0012 41.6 7.2 54 208-273 1066-1125(2050)
344 3gaf_A 7-alpha-hydroxysteroid 44.3 1.1E+02 0.0037 27.9 9.6 83 215-315 10-98 (256)
345 3egc_A Putative ribose operon 44.2 1.8E+02 0.0063 26.3 12.2 38 419-460 175-212 (291)
346 2fsx_A RV0390, COG0607: rhodan 44.2 14 0.00048 31.2 3.0 27 433-459 80-106 (148)
347 1sxj_E Activator 1 40 kDa subu 44.0 20 0.00068 34.5 4.5 38 329-367 133-173 (354)
348 1u94_A RECA protein, recombina 43.6 26 0.00088 34.6 5.3 37 217-264 63-99 (356)
349 3kta_B Chromosome segregation 43.6 19 0.00066 31.6 3.9 36 330-365 86-124 (173)
350 3nhv_A BH2092 protein; alpha-b 43.5 17 0.00057 30.7 3.4 29 433-461 72-102 (144)
351 3rkr_A Short chain oxidoreduct 43.3 86 0.0029 28.6 8.7 83 215-315 27-115 (262)
352 3ucx_A Short chain dehydrogena 43.2 1.3E+02 0.0045 27.3 10.1 84 214-315 8-97 (264)
353 1w36_B RECB, exodeoxyribonucle 42.8 28 0.00097 40.0 6.2 62 215-278 15-78 (1180)
354 1u0j_A DNA replication protein 42.6 33 0.0011 32.4 5.6 43 185-236 74-122 (267)
355 3hgt_A HDA1 complex subunit 3; 42.5 28 0.00097 33.9 5.3 47 410-461 107-153 (328)
356 2hhg_A Hypothetical protein RP 42.4 15 0.00051 30.4 2.9 29 433-461 86-115 (139)
357 1ae1_A Tropinone reductase-I; 42.3 1.1E+02 0.0039 28.0 9.5 83 215-315 19-108 (273)
358 2ae2_A Protein (tropinone redu 42.2 1.3E+02 0.0045 27.2 9.9 83 215-315 7-96 (260)
359 3nyw_A Putative oxidoreductase 42.2 97 0.0033 28.1 8.9 87 215-316 5-97 (250)
360 3hs3_A Ribose operon repressor 42.0 2E+02 0.0067 26.0 16.3 173 258-460 12-204 (277)
361 2q5c_A NTRC family transcripti 41.9 82 0.0028 28.0 8.0 63 256-323 4-67 (196)
362 2jah_A Clavulanic acid dehydro 41.8 1.3E+02 0.0044 27.1 9.6 83 215-315 5-93 (247)
363 1qxn_A SUD, sulfide dehydrogen 41.6 14 0.0005 30.7 2.7 27 433-459 82-108 (137)
364 4a4z_A Antiviral helicase SKI2 41.3 2.4E+02 0.0082 31.7 13.4 78 256-340 336-452 (997)
365 2ius_A DNA translocase FTSK; n 41.0 29 0.00098 36.1 5.3 27 216-244 166-192 (512)
366 3hws_A ATP-dependent CLP prote 41.0 29 0.001 33.8 5.3 19 216-235 50-68 (363)
367 3osu_A 3-oxoacyl-[acyl-carrier 40.7 90 0.0031 28.1 8.4 83 215-315 2-91 (246)
368 2r2a_A Uncharacterized protein 40.5 16 0.00055 32.8 3.0 33 333-365 90-130 (199)
369 1cr0_A DNA primase/helicase; R 40.5 27 0.00093 32.8 4.8 30 313-343 131-160 (296)
370 1tf5_A Preprotein translocase 40.3 90 0.0031 34.4 9.3 76 256-340 432-516 (844)
371 2zr9_A Protein RECA, recombina 40.2 31 0.001 33.8 5.2 44 209-263 47-96 (349)
372 3kke_A LACI family transcripti 39.9 2.2E+02 0.0076 26.0 11.8 38 419-460 181-223 (303)
373 1yb1_A 17-beta-hydroxysteroid 39.7 1.3E+02 0.0046 27.4 9.5 83 215-315 29-117 (272)
374 4iin_A 3-ketoacyl-acyl carrier 39.7 1E+02 0.0035 28.2 8.7 84 215-316 27-117 (271)
375 1kgd_A CASK, peripheral plasma 39.3 12 0.00041 32.6 1.9 17 216-233 4-20 (180)
376 3nbx_X ATPase RAVA; AAA+ ATPas 39.0 18 0.0006 37.6 3.4 27 207-234 31-57 (500)
377 2lci_A Protein OR36; structura 39.0 77 0.0026 24.8 6.2 50 420-472 41-94 (134)
378 3oid_A Enoyl-[acyl-carrier-pro 39.0 1.1E+02 0.0037 27.9 8.7 83 215-315 2-91 (258)
379 1xjc_A MOBB protein homolog; s 38.7 37 0.0013 29.7 5.0 13 220-233 7-19 (169)
380 3lyl_A 3-oxoacyl-(acyl-carrier 38.4 1E+02 0.0036 27.6 8.4 83 215-315 3-91 (247)
381 2qor_A Guanylate kinase; phosp 38.4 12 0.0004 33.3 1.7 20 213-233 8-27 (204)
382 3awd_A GOX2181, putative polyo 38.4 1.5E+02 0.005 26.6 9.5 83 215-315 11-99 (260)
383 3jvv_A Twitching mobility prot 38.3 21 0.0007 35.3 3.6 19 215-234 121-139 (356)
384 2iut_A DNA translocase FTSK; n 38.3 32 0.0011 36.3 5.2 27 217-245 214-240 (574)
385 3h7a_A Short chain dehydrogena 38.2 76 0.0026 28.9 7.5 83 215-315 5-92 (252)
386 3i1j_A Oxidoreductase, short c 38.1 1.3E+02 0.0045 26.8 9.1 87 214-315 11-103 (247)
387 1vee_A Proline-rich protein fa 38.0 14 0.00048 30.6 2.0 27 433-459 74-100 (134)
388 3ksu_A 3-oxoacyl-acyl carrier 37.8 60 0.0021 29.8 6.7 83 215-315 9-100 (262)
389 2lnd_A De novo designed protei 37.6 53 0.0018 25.0 4.9 30 432-461 50-81 (112)
390 2gza_A Type IV secretion syste 37.6 19 0.00066 35.4 3.3 20 213-233 171-190 (361)
391 1ex7_A Guanylate kinase; subst 37.6 14 0.00047 33.0 2.0 15 218-233 2-16 (186)
392 3s99_A Basic membrane lipoprot 37.5 2.9E+02 0.01 26.7 14.8 173 268-461 42-233 (356)
393 3gv0_A Transcriptional regulat 37.2 2.4E+02 0.0081 25.6 12.6 40 417-460 175-214 (288)
394 3iij_A Coilin-interacting nucl 37.2 11 0.00037 32.6 1.2 20 214-234 8-27 (180)
395 4dmm_A 3-oxoacyl-[acyl-carrier 37.2 1.3E+02 0.0044 27.6 9.0 83 215-315 26-115 (269)
396 3d3q_A TRNA delta(2)-isopenten 37.1 18 0.00061 35.6 2.9 14 219-233 9-22 (340)
397 1ry6_A Internal kinesin; kines 37.1 22 0.00077 35.1 3.6 19 216-235 82-102 (360)
398 1xg5_A ARPG836; short chain de 37.0 2E+02 0.0069 26.2 10.3 85 215-315 30-120 (279)
399 2rhc_B Actinorhodin polyketide 36.8 1.6E+02 0.0055 27.0 9.6 83 215-315 20-108 (277)
400 3l77_A Short-chain alcohol deh 36.6 1.7E+02 0.0059 25.8 9.5 82 217-315 2-89 (235)
401 3imf_A Short chain dehydrogena 36.5 1E+02 0.0034 28.1 8.0 83 215-315 4-92 (257)
402 3eph_A TRNA isopentenyltransfe 36.4 21 0.00072 36.0 3.3 14 220-234 5-18 (409)
403 3ftp_A 3-oxoacyl-[acyl-carrier 36.3 1.1E+02 0.0037 28.3 8.2 83 215-315 26-114 (270)
404 3u5t_A 3-oxoacyl-[acyl-carrier 36.2 1.2E+02 0.004 27.9 8.5 84 214-315 24-114 (267)
405 2i3b_A HCR-ntpase, human cance 35.2 31 0.0011 30.5 4.0 43 328-370 103-147 (189)
406 3h5t_A Transcriptional regulat 35.2 2.9E+02 0.01 26.1 14.7 38 419-460 257-294 (366)
407 3hcw_A Maltose operon transcri 34.7 2.6E+02 0.0091 25.4 18.0 41 419-460 178-218 (295)
408 3euj_A Chromosome partition pr 34.3 30 0.001 35.7 4.2 34 329-364 413-448 (483)
409 1ojl_A Transcriptional regulat 34.2 23 0.00079 33.8 3.1 18 216-234 24-41 (304)
410 4h1g_A Maltose binding protein 34.2 25 0.00084 38.1 3.7 25 210-235 454-480 (715)
411 2pt7_A CAG-ALFA; ATPase, prote 34.1 22 0.00075 34.6 3.0 19 214-233 168-186 (330)
412 3sx2_A Putative 3-ketoacyl-(ac 34.1 1.9E+02 0.0064 26.4 9.6 83 215-315 11-111 (278)
413 2vl7_A XPD; helicase, unknown 33.9 36 0.0012 35.4 4.8 55 415-473 370-427 (540)
414 1gee_A Glucose 1-dehydrogenase 33.8 1.9E+02 0.0064 25.9 9.4 83 215-315 5-94 (261)
415 2rjo_A Twin-arginine transloca 33.8 2.9E+02 0.01 25.6 13.3 37 419-459 185-222 (332)
416 2iks_A DNA-binding transcripti 33.7 2.7E+02 0.0092 25.2 15.8 38 419-460 186-223 (293)
417 3t7c_A Carveol dehydrogenase; 33.7 1.9E+02 0.0064 26.9 9.6 83 215-315 26-126 (299)
418 1tue_A Replication protein E1; 33.7 57 0.0019 29.7 5.5 27 208-235 45-75 (212)
419 4g81_D Putative hexonate dehyd 33.6 1E+02 0.0034 28.6 7.5 83 215-315 7-95 (255)
420 2eyu_A Twitching motility prot 33.5 18 0.0006 34.0 2.1 21 214-235 22-42 (261)
421 3a8t_A Adenylate isopentenyltr 33.5 15 0.00052 36.1 1.7 15 218-233 41-55 (339)
422 1nlf_A Regulatory protein REPA 33.4 34 0.0012 31.9 4.1 21 214-235 27-47 (279)
423 1jr3_D DNA polymerase III, del 33.3 33 0.0011 33.0 4.2 41 328-368 74-117 (343)
424 1spx_A Short-chain reductase f 33.1 1.5E+02 0.0051 27.1 8.7 87 215-316 4-96 (278)
425 3exa_A TRNA delta(2)-isopenten 33.0 20 0.00067 35.0 2.4 15 219-234 5-19 (322)
426 4ibo_A Gluconate dehydrogenase 32.8 1E+02 0.0035 28.4 7.5 83 215-315 24-112 (271)
427 3tox_A Short chain dehydrogena 32.8 95 0.0033 28.8 7.3 83 215-315 6-94 (280)
428 3uf0_A Short-chain dehydrogena 32.8 80 0.0027 29.2 6.7 82 215-315 29-115 (273)
429 3t4x_A Oxidoreductase, short c 32.8 1.9E+02 0.0064 26.3 9.3 85 215-315 8-94 (267)
430 3b9p_A CG5977-PA, isoform A; A 32.7 19 0.00065 33.8 2.3 18 217-235 54-71 (297)
431 1ofh_A ATP-dependent HSL prote 32.7 21 0.00072 33.4 2.6 18 216-234 49-66 (310)
432 3rot_A ABC sugar transporter, 32.6 2.9E+02 0.0098 25.1 16.7 37 419-459 177-213 (297)
433 1qhx_A CPT, protein (chloramph 32.5 20 0.00069 30.6 2.2 17 217-234 3-19 (178)
434 3foz_A TRNA delta(2)-isopenten 32.5 20 0.0007 34.8 2.4 14 220-234 13-26 (316)
435 1lvg_A Guanylate kinase, GMP k 32.5 25 0.00084 31.1 2.8 19 216-235 3-21 (198)
436 1vl8_A Gluconate 5-dehydrogena 32.4 2E+02 0.0068 26.2 9.4 83 215-315 19-108 (267)
437 3v8b_A Putative dehydrogenase, 32.4 1.8E+02 0.0062 26.9 9.2 83 215-315 26-114 (283)
438 3ney_A 55 kDa erythrocyte memb 32.2 16 0.00055 32.9 1.5 18 215-233 17-34 (197)
439 4akg_A Glutathione S-transfera 32.2 32 0.0011 43.1 4.6 50 182-237 890-942 (2695)
440 3vaa_A Shikimate kinase, SK; s 32.2 21 0.00073 31.4 2.4 18 216-234 24-41 (199)
441 2qz4_A Paraplegin; AAA+, SPG7, 32.2 21 0.00073 32.5 2.5 17 217-234 39-55 (262)
442 1zem_A Xylitol dehydrogenase; 32.2 2.1E+02 0.0071 25.9 9.5 83 215-315 5-93 (262)
443 3pxx_A Carveol dehydrogenase; 32.1 2.1E+02 0.0073 26.0 9.6 83 215-315 8-108 (287)
444 3h4m_A Proteasome-activating n 32.0 20 0.00069 33.3 2.3 18 216-234 50-67 (285)
445 3r1i_A Short-chain type dehydr 31.9 1E+02 0.0034 28.6 7.2 83 215-315 30-118 (276)
446 2uvd_A 3-oxoacyl-(acyl-carrier 31.7 1.7E+02 0.0059 26.1 8.7 83 215-315 2-91 (246)
447 2o20_A Catabolite control prot 31.6 3.2E+02 0.011 25.4 13.7 36 419-460 230-265 (332)
448 1v5w_A DMC1, meiotic recombina 31.3 28 0.00097 33.9 3.3 31 208-240 108-143 (343)
449 3pk0_A Short-chain dehydrogena 31.1 1.7E+02 0.0058 26.6 8.6 84 215-315 8-97 (262)
450 2zat_A Dehydrogenase/reductase 30.9 2E+02 0.0068 25.9 9.1 83 215-315 12-100 (260)
451 2bd0_A Sepiapterin reductase; 30.7 2.7E+02 0.0091 24.5 9.8 88 217-315 2-95 (244)
452 3b85_A Phosphate starvation-in 30.6 32 0.0011 31.0 3.3 27 207-234 12-38 (208)
453 3tau_A Guanylate kinase, GMP k 30.6 21 0.00071 31.8 2.0 18 216-234 7-24 (208)
454 3lw7_A Adenylate kinase relate 30.4 19 0.00066 30.1 1.7 13 220-233 4-16 (179)
455 3r3s_A Oxidoreductase; structu 30.3 1.9E+02 0.0064 26.9 8.9 83 215-315 47-137 (294)
456 3trf_A Shikimate kinase, SK; a 30.3 21 0.0007 30.8 1.9 17 217-234 5-21 (185)
457 1xq1_A Putative tropinone redu 30.2 1.7E+02 0.006 26.3 8.6 84 215-316 12-102 (266)
458 2ze6_A Isopentenyl transferase 30.1 19 0.00066 33.4 1.7 13 220-233 4-16 (253)
459 3lwd_A 6-phosphogluconolactona 30.0 70 0.0024 29.2 5.6 27 313-339 44-70 (226)
460 3edm_A Short chain dehydrogena 29.9 1.2E+02 0.004 27.7 7.3 83 215-315 6-95 (259)
461 3tsc_A Putative oxidoreductase 29.9 2.5E+02 0.0084 25.6 9.6 83 215-315 9-110 (277)
462 2chq_A Replication factor C sm 29.8 25 0.00087 32.9 2.6 36 329-364 101-138 (319)
463 3nzo_A UDP-N-acetylglucosamine 29.7 3E+02 0.01 26.8 10.7 91 208-313 26-119 (399)
464 1e0c_A Rhodanese, sulfurtransf 29.7 50 0.0017 30.5 4.7 27 433-459 223-249 (271)
465 1urh_A 3-mercaptopyruvate sulf 29.7 59 0.002 30.2 5.2 27 433-459 230-256 (280)
466 3pgx_A Carveol dehydrogenase; 29.7 2.4E+02 0.0082 25.7 9.5 83 215-315 13-114 (280)
467 1np6_A Molybdopterin-guanine d 29.5 41 0.0014 29.3 3.7 14 219-233 8-21 (174)
468 4dzz_A Plasmid partitioning pr 29.3 53 0.0018 28.4 4.5 34 306-342 54-87 (206)
469 3vkg_A Dynein heavy chain, cyt 29.3 46 0.0016 42.3 5.3 49 182-236 873-924 (3245)
470 3jy6_A Transcriptional regulat 29.2 3.1E+02 0.011 24.5 16.8 28 433-460 180-207 (276)
471 3uve_A Carveol dehydrogenase ( 29.0 2.4E+02 0.0084 25.7 9.5 83 215-315 9-113 (286)
472 3tqf_A HPR(Ser) kinase; transf 29.0 25 0.00087 31.2 2.2 17 216-233 15-31 (181)
473 2og2_A Putative signal recogni 28.9 3.9E+02 0.013 26.0 11.2 19 216-235 156-174 (359)
474 1yxm_A Pecra, peroxisomal tran 28.8 2.2E+02 0.0077 26.1 9.2 86 215-315 16-109 (303)
475 1geg_A Acetoin reductase; SDR 28.7 2.8E+02 0.0095 24.8 9.7 81 217-315 2-88 (256)
476 3b9q_A Chloroplast SRP recepto 28.7 3.7E+02 0.013 25.2 11.3 19 216-235 99-117 (302)
477 2c07_A 3-oxoacyl-(acyl-carrier 28.7 1.7E+02 0.0058 26.9 8.3 83 215-315 42-130 (285)
478 1s96_A Guanylate kinase, GMP k 28.5 28 0.00096 31.6 2.5 22 213-235 12-33 (219)
479 3rwb_A TPLDH, pyridoxal 4-dehy 28.5 1.8E+02 0.0063 26.1 8.3 80 215-315 4-89 (247)
480 1lv7_A FTSH; alpha/beta domain 28.3 26 0.00088 32.1 2.3 16 218-234 46-61 (257)
481 1xu9_A Corticosteroid 11-beta- 28.2 2.6E+02 0.0089 25.6 9.5 83 214-313 25-113 (286)
482 4da9_A Short-chain dehydrogena 28.2 1.6E+02 0.0056 27.1 8.0 83 216-316 28-117 (280)
483 4ehx_A Tetraacyldisaccharide 4 28.1 47 0.0016 32.1 4.2 18 182-199 15-32 (315)
484 1fmc_A 7 alpha-hydroxysteroid 28.1 1.8E+02 0.0062 25.8 8.2 83 215-315 9-97 (255)
485 1kht_A Adenylate kinase; phosp 28.0 24 0.00082 30.3 1.9 17 216-233 2-18 (192)
486 3tb6_A Arabinose metabolism tr 28.0 3.3E+02 0.011 24.4 15.3 39 419-460 188-227 (298)
487 3ioy_A Short-chain dehydrogena 27.9 2E+02 0.0068 27.1 8.8 85 215-315 6-96 (319)
488 1kag_A SKI, shikimate kinase I 27.9 32 0.0011 29.1 2.7 18 216-234 3-20 (173)
489 4fcw_A Chaperone protein CLPB; 27.8 31 0.0011 32.3 2.9 23 332-354 121-145 (311)
490 3d8u_A PURR transcriptional re 27.8 3.2E+02 0.011 24.2 13.1 38 419-460 170-207 (275)
491 3o26_A Salutaridine reductase; 27.8 1.7E+02 0.0057 26.9 8.1 86 214-316 9-101 (311)
492 3lf2_A Short chain oxidoreduct 27.5 2.9E+02 0.0098 25.0 9.6 85 215-315 6-96 (265)
493 3s55_A Putative short-chain de 27.3 2.9E+02 0.01 25.1 9.7 83 215-315 8-108 (281)
494 3tnl_A Shikimate dehydrogenase 27.2 1.1E+02 0.0038 29.4 6.7 77 216-313 153-233 (315)
495 1xhl_A Short-chain dehydrogena 27.2 2E+02 0.0068 26.8 8.5 86 215-315 24-115 (297)
496 3grp_A 3-oxoacyl-(acyl carrier 27.0 2.1E+02 0.0072 26.1 8.5 81 215-316 25-111 (266)
497 2x7x_A Sensor protein; transfe 27.0 3.8E+02 0.013 24.7 14.9 37 419-459 177-213 (325)
498 2j41_A Guanylate kinase; GMP, 26.9 33 0.0011 29.9 2.7 19 215-234 4-22 (207)
499 1xkq_A Short-chain reductase f 26.9 2.1E+02 0.0071 26.2 8.5 86 215-315 4-95 (280)
500 3jux_A Protein translocase sub 26.8 1.1E+02 0.0038 33.4 7.1 65 256-329 474-539 (822)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.7e-45 Score=382.30 Aligned_cols=272 Identities=14% Similarity=0.200 Sum_probs=240.6
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
|++.++++|..+||..|||+ |.++||.+++|+|++++|||| ||||+||++|+++.+...... ....++++||
T Consensus 63 l~~~l~~~l~~~g~~~pt~i-----Q~~ai~~i~~g~d~i~~a~TG-sGKT~a~~lpil~~l~~~~~~--~~~~~~~~li 134 (434)
T 2db3_A 63 LRDIIIDNVNKSGYKIPTPI-----QKCSIPVISSGRDLMACAQTG-SGKTAAFLLPILSKLLEDPHE--LELGRPQVVI 134 (434)
T ss_dssp CCHHHHHHHHHTTCCSCCHH-----HHHHHHHHHTTCCEEEECCTT-SSHHHHHHHHHHHHHHHSCCC--CCTTCCSEEE
T ss_pred CCHHHHHHHHHcCCCCCCHH-----HHHHHHHHhcCCCEEEECCCC-CCchHHHHHHHHHHHHhcccc--cccCCccEEE
Confidence 88999999999999999999 999999999999999999999 999999999999999875422 1125789999
Q ss_pred EeccHHHHHHHHHHHHhcc-cCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 262 LVSSQEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l~-~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
|+||||||.|+++++..+. ..++++++++||.+...+...+.. +++|+|+|||+|++++..+.+.++++++|||||||
T Consensus 135 l~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah 213 (434)
T 2db3_A 135 VSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITR-GCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD 213 (434)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTT-CCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHH
T ss_pred EecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhc-CCCEEEEChHHHHHHHHhCCcccccCCeEEEccHh
Confidence 9999999999999999984 458999999999999998888887 89999999999999999988999999999999999
Q ss_pred ccCC---hhHHHHHHhhC--CCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHH
Q 011963 341 SLSK---GDTLSLIRQSI--SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKIL 415 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l--~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~ 415 (474)
+|++ ..++..|+..+ +..+|+++||||+|..+..++..++.++. .+.++.. .....++.|.++.+. ...|..
T Consensus 214 ~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~-~i~~~~~-~~~~~~i~~~~~~~~-~~~k~~ 290 (434)
T 2db3_A 214 RMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYV-FVAIGIV-GGACSDVKQTIYEVN-KYAKRS 290 (434)
T ss_dssp HHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCE-EEEESST-TCCCTTEEEEEEECC-GGGHHH
T ss_pred hhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCE-EEEeccc-cccccccceEEEEeC-cHHHHH
Confidence 9998 78899999875 57899999999999999999999999887 7777654 456678999999996 566876
Q ss_pred HHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 416 KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 416 ~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
.|..+|.. . ..++||||+|+..|+.++..|...|+++. .+|+.++++|++
T Consensus 291 ~l~~~l~~----~----~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~ 348 (434)
T 2db3_A 291 KLIEILSE----Q----ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKN 348 (434)
T ss_dssp HHHHHHHH----C----CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHh----C----CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHc
Confidence 55555544 2 34599999999999999999999999876 678899999985
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=344.02 Aligned_cols=276 Identities=17% Similarity=0.188 Sum_probs=233.4
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhh-----------c
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEK-----------E 250 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~-----------~ 250 (474)
+++.++++|..+||..|||+ |.++||.++.|+|++++|||| ||||++|++|+++.+...... .
T Consensus 22 l~~~l~~~l~~~~~~~~~~~-----Q~~~i~~i~~~~~~lv~a~TG-sGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (417)
T 2i4i_A 22 MGEIIMGNIELTRYTRPTPV-----QKHAIPIIKEKRDLMACAQTG-SGKTAAFLLPILSQIYSDGPGEALRAMKENGRY 95 (417)
T ss_dssp CCHHHHHHHHHHTCCSCCHH-----HHHHHHHHHTTCCEEEECCTT-SCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTT
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHccCCCEEEEcCCC-CHHHHHHHHHHHHHHHhccccchhhcccccccc
Confidence 88999999999999999999 999999999999999999999 999999999999998764311 0
Q ss_pred CCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCC
Q 011963 251 GFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVS 329 (474)
Q Consensus 251 ~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~ 329 (474)
+....++++|||+|||+||.|+++.+..+ ...++++..++||.....+...+.. +++|+|+||++|.+++....+.++
T Consensus 96 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~I~v~Tp~~l~~~l~~~~~~~~ 174 (417)
T 2i4i_A 96 GRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLER-GCHLLVATPGRLVDMMERGKIGLD 174 (417)
T ss_dssp BSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTT-CCSEEEECHHHHHHHHHTTSBCCT
T ss_pred ccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhC-CCCEEEEChHHHHHHHHcCCcChh
Confidence 11123578999999999999999999998 4458999999999999988888887 899999999999999999888999
Q ss_pred CcceEEeccccccCC---hhHHHHHHhhC--CC--CCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEE
Q 011963 330 GVSLLVVDRLDSLSK---GDTLSLIRQSI--SG--KPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQ 402 (474)
Q Consensus 330 ~l~~lViDEad~ll~---~~~l~~Il~~l--~~--~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q 402 (474)
++++|||||||++++ ...+..|+... +. .+|+++||||++..+..++..++.+|. .+.+... .....++.+
T Consensus 175 ~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~i~~ 252 (417)
T 2i4i_A 175 FCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYI-FLAVGRV-GSTSENITQ 252 (417)
T ss_dssp TCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCE-EEEEC-----CCSSEEE
T ss_pred hCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCE-EEEeCCC-CCCccCceE
Confidence 999999999999987 77888888743 32 689999999999999999999999887 6666544 456678999
Q ss_pred EEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 403 SVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 403 ~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
.++.++ ...+...+.+++. ... ...++||||+|+..|+.++..|...|+.+. .+|..+++.|++
T Consensus 253 ~~~~~~-~~~~~~~l~~~l~----~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 324 (417)
T 2i4i_A 253 KVVWVE-ESDKRSFLLDLLN----ATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 324 (417)
T ss_dssp EEEECC-GGGHHHHHHHHHH----TCC--TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEec-cHhHHHHHHHHHH----hcC--CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHc
Confidence 999986 5667755544444 332 267999999999999999999999999876 478889999974
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.7e-40 Score=342.60 Aligned_cols=269 Identities=13% Similarity=0.187 Sum_probs=237.2
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.++++|..+||..|+|+ |.++|+.++.|+|++++|||| ||||++|++|+++.+... ..++++||
T Consensus 44 l~~~l~~~l~~~g~~~~~~~-----Q~~ai~~i~~~~~~lv~a~TG-sGKT~~~~~~~~~~l~~~-------~~~~~~li 110 (410)
T 2j0s_A 44 LREDLLRGIYAYGFEKPSAI-----QQRAIKQIIKGRDVIAQSQSG-TGKTATFSISVLQCLDIQ-------VRETQALI 110 (410)
T ss_dssp CCHHHHHHHHHHTCCSCCHH-----HHHHHHHHHTTCCEEEECCTT-SSHHHHHHHHHHHTCCTT-------SCSCCEEE
T ss_pred CCHHHHHHHHHcCCCCCCHH-----HHHHHHHHhCCCCEEEECCCC-CCchHHHHHHHHHHHhhc-------cCCceEEE
Confidence 88999999999999999999 999999999999999999999 999999999999766432 14679999
Q ss_pred EeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
|+||++|+.|+++.+..+ ...++.+..++||.....+...+.. +++|+|+||++|.+++....+.+.++++|||||||
T Consensus 111 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah 189 (410)
T 2j0s_A 111 LAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDY-GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEAD 189 (410)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHH-CCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred EcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhc-CCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHH
Confidence 999999999999999998 4458999999999999988888887 79999999999999999988899999999999999
Q ss_pred ccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHH
Q 011963 341 SLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l 417 (474)
+|++ ...+..++..++..+|+++||||++..+..++..++.+|. .+.+... .....++.+.+..+.....+...+
T Consensus 190 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l 267 (410)
T 2j0s_A 190 EMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPI-RILVKRD-ELTLEGIKQFFVAVEREEWKFDTL 267 (410)
T ss_dssp HHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCE-EECCCGG-GCSCTTEEEEEEEESSTTHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCE-EEEecCc-cccCCCceEEEEEeCcHHhHHHHH
Confidence 9998 7888899999999999999999999998888889999887 6665544 456678999999988666688655
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 418 IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 418 ~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
..++... . ..++||||+|+..++.++..|...|+.+. .+|+.+++.|++
T Consensus 268 ~~~~~~~----~---~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 324 (410)
T 2j0s_A 268 CDLYDTL----T---ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 324 (410)
T ss_dssp HHHHHHH----T---SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhc----C---CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHC
Confidence 5555443 3 67999999999999999999999998875 577889999974
No 4
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.5e-38 Score=325.20 Aligned_cols=270 Identities=16% Similarity=0.162 Sum_probs=234.9
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.++++|..+||..|+|+ |.++|+.++.|+|++++|||| +|||++|++|++..+... ..++++||
T Consensus 15 l~~~l~~~l~~~g~~~~~~~-----Q~~~i~~~~~~~~~lv~a~TG-sGKT~~~~~~~~~~l~~~-------~~~~~~li 81 (391)
T 1xti_A 15 LKPELLRAIVDCGFEHPSEV-----QHECIPQAILGMDVLCQAKSG-MGKTAVFVLATLQQLEPV-------TGQVSVLV 81 (391)
T ss_dssp CCHHHHHHHHHHSCCSCCHH-----HHHHHHHHTTTCCEEEECSSC-SSHHHHHHHHHHHHCCCC-------TTCCCEEE
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHhcCCcEEEECCCC-CcHHHHHHHHHHHhhccc-------CCCeeEEE
Confidence 88999999999999999988 999999999999999999999 999999999999776432 14679999
Q ss_pred EeccHHHHHHHHHHHHhc-ccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEa 339 (474)
|+||++|+.|+++.+..+ ... ++++..++||.....+...+..+.++|+|+||++|..++....+.+.++.+||||||
T Consensus 82 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEa 161 (391)
T 1xti_A 82 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 161 (391)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSH
T ss_pred ECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCH
Confidence 999999999999999998 444 899999999999888888887756899999999999999998888999999999999
Q ss_pred cccCC----hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHH
Q 011963 340 DSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKIL 415 (474)
Q Consensus 340 d~ll~----~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~ 415 (474)
|++++ ...+..++..++..+|+++||||+++.+..++..++.+|. .+.+..........+.+.+..+. ...+..
T Consensus 162 H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 239 (391)
T 1xti_A 162 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPM-EIFVDDETKLTLHGLQQYYVKLK-DNEKNR 239 (391)
T ss_dssp HHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCE-EEECCCCCCCCCTTCEEEEEECC-GGGHHH
T ss_pred HHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCe-EEEecCccccCcccceEEEEEcC-chhHHH
Confidence 99987 6778888888888999999999999999999999999987 66665543455678888888886 566875
Q ss_pred HHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 416 KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 416 ~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
.+..++.. .. ..++||||+++..|+.++..|...|+++. .+|..+++.|++
T Consensus 240 ~l~~~l~~----~~---~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 298 (391)
T 1xti_A 240 KLFDLLDV----LE---FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 298 (391)
T ss_dssp HHHHHHHH----SC---CSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHh----cC---CCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc
Confidence 55555543 34 78999999999999999999999998875 478889999975
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=6.4e-39 Score=330.33 Aligned_cols=270 Identities=14% Similarity=0.223 Sum_probs=238.4
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.++++|...||..|+|+ |.++|+.++.|+|++++|||| ||||++|++|+++.+... ..+.++||
T Consensus 47 l~~~~~~~l~~~~~~~~~~~-----Q~~~i~~~~~~~~~lv~a~TG-sGKT~~~~~~~~~~~~~~-------~~~~~~li 113 (414)
T 3eiq_A 47 LSESLLRGIYAYGFEKPSAI-----QQRAILPCIKGYDVIAQAQSG-TGKTATFAISILQQIELD-------LKATQALV 113 (414)
T ss_dssp CCHHHHHHHHHTTCCSCCHH-----HHHHHHHHHTTCCEEECCCSC-SSSHHHHHHHHHHHCCTT-------SCSCCEEE
T ss_pred CCHHHHHHHHHcCCCCCCHH-----HHHHhHHHhCCCCEEEECCCC-CcccHHHHHHHHHHHhhc-------CCceeEEE
Confidence 88999999999999999999 999999999999999999999 999999999999876542 14678999
Q ss_pred EeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
|+||++|+.|+++.+..+ ...++.+..++||.....+...+...+++|+|+||++|++++....+.+.++++|||||||
T Consensus 114 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah 193 (414)
T 3eiq_A 114 LAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 193 (414)
T ss_dssp ECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHH
T ss_pred EeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHH
Confidence 999999999999999998 4558999999999999988888875589999999999999999988899999999999999
Q ss_pred ccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHH
Q 011963 341 SLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l 417 (474)
++++ ...+..++..++.++|+++||||++..+..++..++.+|. .+.+... ......+.+.+..+.....+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--- 268 (414)
T 3eiq_A 194 EMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPI-RILVKKE-ELTLEGIRQFYINVEREEWKL--- 268 (414)
T ss_dssp HHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCE-EECCCCC-CCCTTSCCEEEEECSSSTTHH---
T ss_pred HhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCE-EEEecCC-ccCCCCceEEEEEeChHHhHH---
Confidence 9987 6888999999999999999999999999999999999987 6666544 566778899999887766677
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 418 IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 418 ~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
..|..++.... .+++||||+++..|+.++..|...|+.+. .+|..+++.|++
T Consensus 269 -~~l~~~~~~~~---~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 328 (414)
T 3eiq_A 269 -DTLCDLYETLT---ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS 328 (414)
T ss_dssp -HHHHHHHHSSC---CSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSC
T ss_pred -HHHHHHHHhCC---CCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHc
Confidence 45555555555 78999999999999999999999998876 577888999975
No 6
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4.6e-40 Score=347.31 Aligned_cols=266 Identities=15% Similarity=0.190 Sum_probs=167.2
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcC--CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFL 259 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~a 259 (474)
|++.++++|..+||..|||+ |.++||.++.| +|+|++|||| ||||++|++|+++.+... ..++++
T Consensus 99 l~~~l~~~l~~~g~~~p~~~-----Q~~ai~~il~~~~~~~l~~a~TG-sGKT~~~~l~il~~l~~~-------~~~~~~ 165 (479)
T 3fmp_B 99 LKPQLLQGVYAMGFNRPSKI-----QENALPLMLAEPPQNLIAQSQSG-TGKTAAFVLAMLSQVEPA-------NKYPQC 165 (479)
T ss_dssp CCHHHHHHHHHTTCCSCCHH-----HHHHHHHHTSBSCCEEEEECCSS-SSHHHHHHHHHHTTCCTT-------SCSCCE
T ss_pred CCHHHHHHHHHcCCCCCCHH-----HHHHHHHHHcCCCCcEEEEcCCC-CchhHHHHHHHHHHHhhc-------CCCCcE
Confidence 89999999999999999999 99999999998 8999999999 999999999999776442 146799
Q ss_pred EEEeccHHHHHHHHHHHHhccc-C-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHc-CCCCCCCcceEEe
Q 011963 260 LFLVSSQEKAAKVRSVCKPLKA-F-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL-KAIDVSGVSLLVV 336 (474)
Q Consensus 260 lil~PtreLa~Qi~~~~~~l~~-~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~-~~~~l~~l~~lVi 336 (474)
|||+||++||.|+++.+..+.. . ++.+...+++...... .. .+++|+|+||++|++++.. +.+.+.++.+|||
T Consensus 166 lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 166 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QK-ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CC-CCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred EEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---cc-CCCCEEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 9999999999999999999843 3 7888888888664321 12 2679999999999999976 6778899999999
Q ss_pred ccccccCC----hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchh
Q 011963 337 DRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEE 412 (474)
Q Consensus 337 DEad~ll~----~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~ 412 (474)
||||+|++ ...+..|+..++..+|+++||||++..+..++..++.+|. .+.+... ......+.|.++.+.....
T Consensus 242 DEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~i~~~~~-~~~~~~~~~~~~~~~~~~~ 319 (479)
T 3fmp_B 242 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPN-VIKLKRE-EETLDTIKQYYVLCSSRDE 319 (479)
T ss_dssp CCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEE-EEEEC----------------------
T ss_pred ECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCe-EEecccc-ccCcCCceEEEEEeCCHHH
Confidence 99999986 6677788899999999999999999999999999999887 6776654 5667789999999987667
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 413 KILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 413 K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
+...+. .++.... ..++||||+|+..|+.++..|...|+.+. .+|+.+++.|++
T Consensus 320 ~~~~l~----~~~~~~~---~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~ 381 (479)
T 3fmp_B 320 KFQALC----NLYGAIT---IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE 381 (479)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHH----HHHhhcc---CCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHc
Confidence 774444 4444434 67999999999999999999999988876 567788888875
No 7
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=2.9e-39 Score=311.33 Aligned_cols=201 Identities=16% Similarity=0.258 Sum_probs=184.6
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.++++|.++||..|||+ |.++||.++.|+|++++|||| ||||++|++|++..+....... ...++++||
T Consensus 36 l~~~l~~~l~~~g~~~~~~~-----Q~~~i~~~~~g~~~l~~apTG-sGKT~~~~l~~l~~l~~~~~~~--~~~~~~~li 107 (242)
T 3fe2_A 36 FPANVMDVIARQNFTEPTAI-----QAQGWPVALSGLDMVGVAQTG-SGKTLSYLLPAIVHINHQPFLE--RGDGPICLV 107 (242)
T ss_dssp CCHHHHHHHHTTTCCSCCHH-----HHHHHHHHHHTCCEEEEECTT-SCHHHHHHHHHHHHHHTSCCCC--TTCCCSEEE
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHhCCCCEEEECCCc-CHHHHHHHHHHHHHHHhccccc--cCCCCEEEE
Confidence 88999999999999999999 999999999999999999999 9999999999999987643211 125889999
Q ss_pred EeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
|+|||+||.|+++.+..+ ...++++..++||.+...+...+.. +++|+|+||++|++++..+.+.++++++|||||||
T Consensus 108 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah 186 (242)
T 3fe2_A 108 LAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER-GVEICIATPGRLIDFLECGKTNLRRTTYLVLDEAD 186 (242)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH-CCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHH
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC-CCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHH
Confidence 999999999999999998 5569999999999999999888888 89999999999999999988899999999999999
Q ss_pred ccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCC
Q 011963 341 SLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQS 392 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~ 392 (474)
+|++ ...+..|+..++.++|+++||||+|+.+..++..++++|. .|.++..
T Consensus 187 ~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~-~i~~~~~ 240 (242)
T 3fe2_A 187 RMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYI-HINIGAL 240 (242)
T ss_dssp HHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCE-EEEECC-
T ss_pred HHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCE-EEEecCC
Confidence 9987 8899999999999999999999999999999999999998 8887653
No 8
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=8.9e-39 Score=345.66 Aligned_cols=279 Identities=17% Similarity=0.176 Sum_probs=230.4
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHh--cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYS--SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFL 259 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l--~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~a 259 (474)
|++.++++|..+||..|||+ |.++|+.++ .|+|+|++|||| ||||+||++|+++.+....... ..++++
T Consensus 28 l~~~l~~~l~~~g~~~~~~~-----Q~~~i~~il~~~~~dvlv~apTG-sGKTl~~~lpil~~l~~~~~~~---~~~~~~ 98 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPV-----QQKTIKPILSSEDHDVIARAKTG-TGKTFAFLIPIFQHLINTKFDS---QYMVKA 98 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHH-----HHHHHHHHHCSSSEEEEEECCTT-SCHHHHHHHHHHHHHHHTTTSS---TTSCCE
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHHccCCCeEEEEcCCC-cHHHHHHHHHHHHHHHhccccc---cCCCeE
Confidence 89999999999999999999 999999999 788999999999 9999999999999998754322 247899
Q ss_pred EEEeccHHHHHHHHHHHHhcc----cC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcC-CCCCCCcce
Q 011963 260 LFLVSSQEKAAKVRSVCKPLK----AF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK-AIDVSGVSL 333 (474)
Q Consensus 260 lil~PtreLa~Qi~~~~~~l~----~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~-~~~l~~l~~ 333 (474)
|||+||++||.|+++.+..+. .. .+.+..++||.....+...+...+++|||+||++|++++... ...++.+.+
T Consensus 99 lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~ 178 (579)
T 3sqw_A 99 VIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDY 178 (579)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCE
T ss_pred EEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCE
Confidence 999999999999999999972 22 578899999999998888886657999999999999998774 456888999
Q ss_pred EEeccccccCC---hhHHHHHHhhCC-------CCCcEEEEEccCCccHHHHHHHhhcCCceEEEccC---CcccccCCc
Q 011963 334 LVVDRLDSLSK---GDTLSLIRQSIS-------GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQ---SVASQSACI 400 (474)
Q Consensus 334 lViDEad~ll~---~~~l~~Il~~l~-------~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~---~~~~~~~~i 400 (474)
|||||||+|++ .+.+..|+..++ ..+|+++||||+++.+..++..++..|. .+.+.. ........+
T Consensus 179 lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~i 257 (579)
T 3sqw_A 179 KVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKE-CLFLDTVDKNEPEAHERI 257 (579)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSE-EEEEESSCSSSCSSCTTE
T ss_pred EEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCc-eEEEeecCcccccccccc
Confidence 99999999998 677777777663 3789999999999999999999999885 333321 223455678
Q ss_pred EEEEEEcCCchhHHHHHHHHHHHHhhc-cCCCCCCcEEEEEccchhHHHHHHHHhhC---CCccc--------chHHHHH
Q 011963 401 IQSVNVCASDEEKILKGIQVLDHAYGD-HFHSEPLKVLYIVGKDSKFQNLVSTLKCK---GYSIS--------TGSNCIV 468 (474)
Q Consensus 401 ~q~~~~~~~~~~K~~~l~~lL~~ll~~-~~~~~~~k~LVF~~s~~~a~~l~~~L~~~---gi~v~--------~~r~~~i 468 (474)
.+.++.+.....+...+...|...+.. .. ..++||||+|+..|+.++..|... |+.+. .+|..++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~ 334 (579)
T 3sqw_A 258 DQSVVISEKFANSIFAAVEHIKKQIKERDS---NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 334 (579)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHHHHHHTTT---CCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH
T ss_pred ceEEEEecchhhhHHHHHHHHHHHHhhcCC---CCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHH
Confidence 888888875555554444555554443 33 679999999999999999999876 88774 5788899
Q ss_pred HHhhc
Q 011963 469 SHIKN 473 (474)
Q Consensus 469 ~~Fk~ 473 (474)
+.|++
T Consensus 335 ~~F~~ 339 (579)
T 3sqw_A 335 KRFKK 339 (579)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 99974
No 9
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=7.3e-38 Score=321.54 Aligned_cols=267 Identities=19% Similarity=0.241 Sum_probs=231.4
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.++++|..+||..|+|+ |.++|+.++.|+|++++|||| ||||++|++|++..+... ..++++||
T Consensus 28 l~~~l~~~l~~~g~~~~~~~-----Q~~~i~~i~~~~~~li~a~TG-sGKT~~~~~~~~~~~~~~-------~~~~~~li 94 (400)
T 1s2m_A 28 LKRELLMGIFEAGFEKPSPI-----QEEAIPVAITGRDILARAKNG-TGKTAAFVIPTLEKVKPK-------LNKIQALI 94 (400)
T ss_dssp CCHHHHHHHHHTTCCSCCHH-----HHHHHHHHHHTCCEEEECCTT-SCHHHHHHHHHHHHCCTT-------SCSCCEEE
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHhcCCCEEEECCCC-cHHHHHHHHHHHHHHhhc-------cCCccEEE
Confidence 88999999999999999998 999999999999999999999 999999999999776432 14678999
Q ss_pred EeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
|+||++|+.|+++.+..+ ...++++..++|+.....+...+.. +++|+|+||++|++++......+.++.+|||||||
T Consensus 95 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 173 (400)
T 1s2m_A 95 MVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNE-TVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD 173 (400)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTS-CCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH
T ss_pred EcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcC-CCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch
Confidence 999999999999999998 4458999999999998887777766 79999999999999999888889999999999999
Q ss_pred ccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHH
Q 011963 341 SLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l 417 (474)
++++ ...+..++..++...|+++||||++..+..++..++..|. .+.+... ....++.+++..+. ...|...+
T Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~-~~~k~~~l 249 (400)
T 1s2m_A 174 KMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPY-EINLMEE--LTLKGITQYYAFVE-ERQKLHCL 249 (400)
T ss_dssp HHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCE-EESCCSS--CBCTTEEEEEEECC-GGGHHHHH
T ss_pred HhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCe-EEEeccc--cccCCceeEEEEec-hhhHHHHH
Confidence 9998 6778889988888999999999999999999999998886 5555432 45567888888886 56677444
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 418 IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 418 ~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
.. ++.... .+++||||+++..++.++..|...|+.+. .+|..+++.|++
T Consensus 250 ~~----~~~~~~---~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 306 (400)
T 1s2m_A 250 NT----LFSKLQ---INQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQ 306 (400)
T ss_dssp HH----HHHHSC---CSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred HH----HHhhcC---CCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhc
Confidence 44 444444 67999999999999999999999888775 567889999975
No 10
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.4e-38 Score=340.49 Aligned_cols=279 Identities=17% Similarity=0.178 Sum_probs=228.9
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHh--cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYS--SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFL 259 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l--~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~a 259 (474)
|++.++++|..+||..|||+ |.++|+.++ .|+|+|++|||| ||||++|++|+++.+....... ..++++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~-----Q~~~i~~~l~~~~~~~lv~apTG-sGKTl~~~lpil~~l~~~~~~~---~~~~~~ 149 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPV-----QQKTIKPILSSEDHDVIARAKTG-TGKTFAFLIPIFQHLINTKFDS---QYMVKA 149 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHH-----HHHHHHHHHSSSSEEEEEECCTT-SCHHHHHHHHHHHHHHHTTTSS---TTSCCE
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHhcCCCCeEEEECCCC-CCccHHHHHHHHHHHHhccccc---cCCeeE
Confidence 88999999999999999999 999999999 678999999999 9999999999999998764322 246799
Q ss_pred EEEeccHHHHHHHHHHHHhc-c---cC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcC-CCCCCCcce
Q 011963 260 LFLVSSQEKAAKVRSVCKPL-K---AF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK-AIDVSGVSL 333 (474)
Q Consensus 260 lil~PtreLa~Qi~~~~~~l-~---~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~-~~~l~~l~~ 333 (474)
|||+||++||.|+++.+..+ . .. ++.+..++||.....+...+...+++|||+||++|++++... ...++++++
T Consensus 150 lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~ 229 (563)
T 3i5x_A 150 VIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDY 229 (563)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCE
T ss_pred EEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceE
Confidence 99999999999999999996 2 12 577899999999988888886558999999999999998764 446788999
Q ss_pred EEeccccccCC---hhHHHHHHhhC-------CCCCcEEEEEccCCccHHHHHHHhhcCCceEEEcc---CCcccccCCc
Q 011963 334 LVVDRLDSLSK---GDTLSLIRQSI-------SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLN---QSVASQSACI 400 (474)
Q Consensus 334 lViDEad~ll~---~~~l~~Il~~l-------~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~---~~~~~~~~~i 400 (474)
|||||||+|++ ...+..|+..+ +..+|+++||||+++.+..++..++.++. .+.+. .........+
T Consensus 230 lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 308 (563)
T 3i5x_A 230 KVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKE-CLFLDTVDKNEPEAHERI 308 (563)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSE-EEEEESSCSSSCSSCTTE
T ss_pred EEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCc-eEEEeccCCCCccccccC
Confidence 99999999998 67777777665 24789999999999999999999998875 33332 1223455678
Q ss_pred EEEEEEcCCchhHHHHHHHHHHHHhhc-cCCCCCCcEEEEEccchhHHHHHHHHhhC---CCccc--------chHHHHH
Q 011963 401 IQSVNVCASDEEKILKGIQVLDHAYGD-HFHSEPLKVLYIVGKDSKFQNLVSTLKCK---GYSIS--------TGSNCIV 468 (474)
Q Consensus 401 ~q~~~~~~~~~~K~~~l~~lL~~ll~~-~~~~~~~k~LVF~~s~~~a~~l~~~L~~~---gi~v~--------~~r~~~i 468 (474)
.+.++.+.....+...+...+...+.. .. ..++||||+|+..|+.++..|... |+++. .+|..++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~ 385 (563)
T 3i5x_A 309 DQSVVISEKFANSIFAAVEHIKKQIKERDS---NYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 385 (563)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHHHHHHTTT---CCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH
T ss_pred ceEEEECchhHhhHHHHHHHHHHHHhhcCC---CCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHH
Confidence 888888875555555444555554443 33 789999999999999999999876 87774 6788899
Q ss_pred HHhhc
Q 011963 469 SHIKN 473 (474)
Q Consensus 469 ~~Fk~ 473 (474)
+.|++
T Consensus 386 ~~f~~ 390 (563)
T 3i5x_A 386 KRFKK 390 (563)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99975
No 11
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=4.8e-39 Score=320.37 Aligned_cols=191 Identities=15% Similarity=0.178 Sum_probs=171.5
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcC--CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFL 259 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~a 259 (474)
|++.++++|..+||..|||| |.++||.++.| +|++++|||| ||||+||++|+++.+... ..++++
T Consensus 99 l~~~l~~~l~~~g~~~pt~i-----Q~~ai~~il~~~~~~~l~~a~TG-sGKT~a~~lp~l~~l~~~-------~~~~~~ 165 (300)
T 3fmo_B 99 LKPQLLQGVYAMGFNRPSKI-----QENALPLMLAEPPQNLIAQSQSG-TGKTAAFVLAMLSQVEPA-------NKYPQC 165 (300)
T ss_dssp CCHHHHHHHHHTTCCSCCHH-----HHHHHHHHTSSSCCCEEEECCTT-SSHHHHHHHHHHHHCCTT-------SCSCCE
T ss_pred CCHHHHHHHHHcCCCCCCHH-----HHHHHHHHHcCCCCeEEEECCCC-CCccHHHHHHHHHhhhcc-------CCCceE
Confidence 89999999999999999999 99999999998 9999999999 999999999999887543 257899
Q ss_pred EEEeccHHHHHHHHHHHHhccc-C-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHc-CCCCCCCcceEEe
Q 011963 260 LFLVSSQEKAAKVRSVCKPLKA-F-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL-KAIDVSGVSLLVV 336 (474)
Q Consensus 260 lil~PtreLa~Qi~~~~~~l~~-~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~-~~~~l~~l~~lVi 336 (474)
|||+||||||.|+++++..+.. . ++.+..++||....... .. +++|||||||+|++++.+ +.++++++++|||
T Consensus 166 lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~-~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 166 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KI-SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CC-CCSEEEECHHHHHHHHTTTCCCCGGGCSEEEE
T ss_pred EEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cC-CCCEEEECHHHHHHHHHhcCCCChhhceEEEE
Confidence 9999999999999999999843 3 78999999987754322 23 789999999999999976 6788999999999
Q ss_pred ccccccCC----hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEcc
Q 011963 337 DRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLN 390 (474)
Q Consensus 337 DEad~ll~----~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~ 390 (474)
||||+|++ ...+..|+..++.++|+++||||+++.+..+++.++.+|. .|.+.
T Consensus 242 DEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~-~i~~~ 298 (300)
T 3fmo_B 242 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPN-VIKLK 298 (300)
T ss_dssp TTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCE-EEEEC
T ss_pred eCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCe-EEEec
Confidence 99999985 7888899999999999999999999999999999999998 77764
No 12
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=4.9e-38 Score=323.20 Aligned_cols=266 Identities=14% Similarity=0.176 Sum_probs=227.5
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcC--CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFL 259 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~a 259 (474)
+++.++++|..+||..|+|+ |.++|+.++.| +|++++|||| ||||++|++|+++.+.... .++++
T Consensus 32 l~~~l~~~l~~~g~~~~~~~-----Q~~~i~~~~~~~~~~~lv~apTG-sGKT~~~~~~~~~~~~~~~-------~~~~~ 98 (412)
T 3fht_A 32 LKPQLLQGVYAMGFNRPSKI-----QENALPLMLAEPPQNLIAQSQSG-TGKTAAFVLAMLSQVEPAN-------KYPQC 98 (412)
T ss_dssp CCHHHHHHHHHTTCCSCCHH-----HHHHHHHHHSSSCCCEEEECCTT-SCHHHHHHHHHHHHCCTTS-------CSCCE
T ss_pred CCHHHHHHHHHcCCCCCCHH-----HHHHHHHHhcCCCCeEEEECCCC-chHHHHHHHHHHHHhhhcC-------CCCCE
Confidence 89999999999999999999 99999999998 8999999999 9999999999998775432 46799
Q ss_pred EEEeccHHHHHHHHHHHHhccc-C-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHc-CCCCCCCcceEEe
Q 011963 260 LFLVSSQEKAAKVRSVCKPLKA-F-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL-KAIDVSGVSLLVV 336 (474)
Q Consensus 260 lil~PtreLa~Qi~~~~~~l~~-~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~-~~~~l~~l~~lVi 336 (474)
|||+||++|+.|+++.+..+.. . ++.+...+|+....... ..+++|+|+||++|++++.. +.+.+.++.+|||
T Consensus 99 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iVi 174 (412)
T 3fht_A 99 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 174 (412)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh----cCCCCEEEECchHHHHHHHhcCCcChhhCcEEEE
Confidence 9999999999999999999843 3 78888888887654321 22689999999999999966 6788899999999
Q ss_pred ccccccCC----hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchh
Q 011963 337 DRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEE 412 (474)
Q Consensus 337 DEad~ll~----~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~ 412 (474)
||||++++ ...+..++..++.++|+++||||+++.+..++..++.+|. .+.+... ......+.+.++.+.....
T Consensus 175 DEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~ 252 (412)
T 3fht_A 175 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPN-VIKLKRE-EETLDTIKQYYVLCSSRDE 252 (412)
T ss_dssp ETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCE-EECCCGG-GSSCTTEEEEEEECSSHHH
T ss_pred eCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCe-EEeeccc-cccccCceEEEEEcCChHH
Confidence 99999975 6677788888899999999999999999999999999887 6666554 5667789999999987777
Q ss_pred HHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 413 KILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 413 K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
+...+..++.. .. ..++||||+++..|+.++..|...|+.+. .+|..+++.|++
T Consensus 253 ~~~~l~~~~~~----~~---~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 314 (412)
T 3fht_A 253 KFQALCNLYGA----IT---IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE 314 (412)
T ss_dssp HHHHHHHHHHH----HS---SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhh----cC---CCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHC
Confidence 77555555444 33 67999999999999999999999998876 678889999975
No 13
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=302.09 Aligned_cols=198 Identities=16% Similarity=0.245 Sum_probs=172.7
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.++++|.++||..|||+ |.++||.++.|+|++++|||| ||||++|++|++..+....... ....++++||
T Consensus 27 l~~~l~~~l~~~g~~~~~~~-----Q~~~i~~~~~~~~~l~~apTG-sGKT~~~~l~~~~~l~~~~~~~-~~~~~~~~li 99 (228)
T 3iuy_A 27 QYPDLLKSIIRVGILKPTPI-----QSQAWPIILQGIDLIVVAQTG-TGKTLSYLMPGFIHLDSQPISR-EQRNGPGMLV 99 (228)
T ss_dssp TCHHHHHHHHHHTCCSCCHH-----HHHHHHHHHTTCCEEEECCTT-SCHHHHHHHHHHHHHC----------CCCSEEE
T ss_pred cCHHHHHHHHHCCCCCCCHH-----HHHHHHHHhCCCCEEEECCCC-ChHHHHHHHHHHHHHHhccchh-hccCCCcEEE
Confidence 88999999999999999999 999999999999999999999 9999999999998876532211 1125789999
Q ss_pred EeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccc
Q 011963 262 LVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS 341 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ 341 (474)
|+||++||.|+++.+..+...++++..++||.....+...+.. +++|+|+||++|.+++....+.++++++|||||||+
T Consensus 100 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~ 178 (228)
T 3iuy_A 100 LTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISK-GVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADK 178 (228)
T ss_dssp ECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHS-CCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHH
T ss_pred EeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcC-CCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHH
Confidence 9999999999999999997668999999999998888888887 899999999999999999889999999999999999
Q ss_pred cCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEE
Q 011963 342 LSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLS 388 (474)
Q Consensus 342 ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~ 388 (474)
|++ ...+..|+..++.++|+++||||+|+.+.+++..++++|. .|.
T Consensus 179 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~-~i~ 227 (228)
T 3iuy_A 179 MLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPM-IVY 227 (228)
T ss_dssp HHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCE-EEE
T ss_pred HhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCE-EEe
Confidence 997 8889999999999999999999999999999999999997 554
No 14
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.4e-37 Score=315.60 Aligned_cols=265 Identities=15% Similarity=0.220 Sum_probs=227.2
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcC--CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFL 259 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~a 259 (474)
|++.++++|..+||..|+|+ |.++|+.++.| +|++++|||| ||||++|++|++..+... ..++++
T Consensus 12 l~~~l~~~l~~~~~~~~~~~-----Q~~~i~~~~~~~~~~~lv~a~TG-sGKT~~~~~~~~~~~~~~-------~~~~~~ 78 (395)
T 3pey_A 12 LAPELLKGIYAMKFQKPSKI-----QERALPLLLHNPPRNMIAQSQSG-TGKTAAFSLTMLTRVNPE-------DASPQA 78 (395)
T ss_dssp CCHHHHHHHHHTTCCSCCHH-----HHHHHHHHHCSSCCCEEEECCTT-SCHHHHHHHHHHHHCCTT-------CCSCCE
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHHcCCCCeEEEECCCC-CcHHHHHHHHHHHHhccC-------CCCccE
Confidence 88999999999999999999 99999999998 8999999999 999999999999876542 147799
Q ss_pred EEEeccHHHHHHHHHHHHhcc-cCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecc
Q 011963 260 LFLVSSQEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDR 338 (474)
Q Consensus 260 lil~PtreLa~Qi~~~~~~l~-~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDE 338 (474)
|||+||++|+.|+++.+..+. ..++.+..++|+...... .. +++|+|+||++|++++....+.+.++++|||||
T Consensus 79 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 79 ICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QI-NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CB-CCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred EEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cC-CCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 999999999999999999984 448888888887553321 22 689999999999999999888999999999999
Q ss_pred ccccCC----hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHH
Q 011963 339 LDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKI 414 (474)
Q Consensus 339 ad~ll~----~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~ 414 (474)
||++.+ ...+..++..++.+.|+++||||+++.+..++..++.++. .+.+... ......+.+.+..+.....+.
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 231 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNAN-TLELQTN-EVNVDAIKQLYMDCKNEADKF 231 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCE-EECCCGG-GCSCTTEEEEEEECSSHHHHH
T ss_pred hhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCe-EEEcccc-ccccccccEEEEEcCchHHHH
Confidence 999975 6778888888899999999999999999999999998886 5655544 455677888888887666676
Q ss_pred HHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 415 LKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 415 ~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
..+..++.... .+++||||+++..|+.++..|+..|+.+. .+|+.+++.|++
T Consensus 232 ----~~l~~~~~~~~---~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 291 (395)
T 3pey_A 232 ----DVLTELYGLMT---IGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFRE 291 (395)
T ss_dssp ----HHHHHHHTTTT---SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHhcc---CCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHC
Confidence 55555655555 78999999999999999999999998876 578889999975
No 15
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=4e-38 Score=321.93 Aligned_cols=268 Identities=15% Similarity=0.214 Sum_probs=174.9
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.++++|...||..|+|+ |.++|+.++.|+|++++|||| ||||++|++|++..+... ..++++||
T Consensus 28 l~~~l~~~l~~~g~~~~~~~-----Q~~~i~~i~~~~~~lv~~~TG-sGKT~~~~~~~~~~l~~~-------~~~~~~li 94 (394)
T 1fuu_A 28 LDENLLRGVFGYGFEEPSAI-----QQRAIMPIIEGHDVLAQAQSG-TGKTGTFSIAALQRIDTS-------VKAPQALM 94 (394)
T ss_dssp CCHHHHHHHHHHTCCSCCHH-----HHHHHHHHHHTCCEEECCCSS-HHHHHHHHHHHHHHCCTT-------CCSCCEEE
T ss_pred CCHHHHHHHHHcCCCCCCHH-----HHHHHHHHhCCCCEEEECCCC-ChHHHHHHHHHHHHhhcc-------CCCCCEEE
Confidence 88999999999999999988 999999999999999999999 999999999999876542 24779999
Q ss_pred EeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
|+||++|+.|+++.+..+ ...++++..++|+.....+...+. +++|+|+||++|++++....+.+.++.+|||||||
T Consensus 95 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah 172 (394)
T 1fuu_A 95 LAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR--DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD 172 (394)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH--HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred EcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC--CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChH
Confidence 999999999999999998 455899999999999887776666 47999999999999999888889999999999999
Q ss_pred ccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHH
Q 011963 341 SLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l 417 (474)
++++ ...+..++..++..+|++++|||+++.+..++..++.+|. .+.+... .....++.+.+..+.....+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~- 249 (394)
T 1fuu_A 173 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPV-RILVKKD-ELTLEGIKQFYVNVEEEEYKYEC- 249 (394)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCE-EEEECC--------------------------
T ss_pred HhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCe-EEEecCc-cccCCCceEEEEEcCchhhHHHH-
Confidence 9976 7788899999999999999999999999999999999887 5655543 44556788888877655556644
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 418 IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 418 ~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
|..++.... ..++||||+++..++.++..|...|+.+. .+|..+++.|++
T Consensus 250 ---l~~~~~~~~---~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 307 (394)
T 1fuu_A 250 ---LTDLYDSIS---VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS 307 (394)
T ss_dssp ----------------------------------------------------------------
T ss_pred ---HHHHHhcCC---CCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHC
Confidence 444444444 67999999999999999999999888775 567778888864
No 16
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2.1e-37 Score=299.97 Aligned_cols=214 Identities=16% Similarity=0.222 Sum_probs=177.8
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcC--CCCCCcEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEG--FSFTGPFL 259 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~--~~~~~~~a 259 (474)
+++.++++|..+||..|+|+ |.++|+.++.|+|++++|||| ||||++|++|++..+........ ....++++
T Consensus 30 l~~~l~~~l~~~g~~~~~~~-----Q~~~i~~i~~~~~~l~~a~TG-sGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 103 (253)
T 1wrb_A 30 LDPTIRNNILLASYQRPTPI-----QKNAIPAILEHRDIMACAQTG-SGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKC 103 (253)
T ss_dssp CCCSTTTTTTTTTCCSCCHH-----HHHHHHHHHTTCCEEEECCTT-SSHHHHHHHHHHHHHHTTCC------CCBCCSE
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHhCCCCEEEECCCC-ChHHHHHHHHHHHHHHhhccccccccccCCceE
Confidence 77888899999999999999 999999999999999999999 99999999999998876431100 11246799
Q ss_pred EEEeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecc
Q 011963 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDR 338 (474)
Q Consensus 260 lil~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDE 338 (474)
|||+|||+|+.|+++.+..+ ...++++..++||.....+...+.. +++|+|+||++|.+++....+.++++++|||||
T Consensus 104 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDE 182 (253)
T 1wrb_A 104 LILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQM-GCHLLVATPGRLVDFIEKNKISLEFCKYIVLDE 182 (253)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSS-CCSEEEECHHHHHHHHHTTSBCCTTCCEEEEET
T ss_pred EEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCC-CCCEEEECHHHHHHHHHcCCCChhhCCEEEEeC
Confidence 99999999999999999998 4458999999999998888888877 899999999999999999888999999999999
Q ss_pred ccccCC---hhHHHHHHhhC--CC--CCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEE
Q 011963 339 LDSLSK---GDTLSLIRQSI--SG--KPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSV 404 (474)
Q Consensus 339 ad~ll~---~~~l~~Il~~l--~~--~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~ 404 (474)
||+|++ ...+..|+..+ +. ++|+++||||+++.+..++..++.+|. .|.++.. .....+|+|.+
T Consensus 183 ah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~-~i~~~~~-~~~~~~i~q~~ 253 (253)
T 1wrb_A 183 ADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYI-FMTVGRV-GSTSDSIKQEI 253 (253)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCE-EEEEC--------------
T ss_pred HHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCE-EEEECCC-CCCcCCceecC
Confidence 999987 78899999854 44 789999999999999999999999997 7888765 45667777753
No 17
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.8e-37 Score=298.81 Aligned_cols=193 Identities=16% Similarity=0.159 Sum_probs=176.6
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.++++|..+||..|+|+ |.++|+.++.|+|++++|||| ||||++|++|+++.+....... ..++++||
T Consensus 61 l~~~l~~~l~~~g~~~~~~~-----Q~~~i~~~~~~~~~lv~a~TG-sGKT~~~~l~~l~~l~~~~~~~---~~~~~~li 131 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEI-----QHKSIRPLLEGRDLLAAAKTG-SGKTLAFLIPAVELIVKLRFMP---RNGTGVLI 131 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHH-----HHHHHHHHHHTCCCEECCCTT-SCHHHHHHHHHHHHHHHTTCCG---GGCCCEEE
T ss_pred cCHHHHHHHHHCCCCCCCHH-----HHHHHHHHhCCCcEEEEccCC-CCchHHHHHHHHHHHHhccccc---cCCceEEE
Confidence 88999999999999999999 999999999999999999999 9999999999999988743221 14779999
Q ss_pred EeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHc-CCCCCCCcceEEeccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL-KAIDVSGVSLLVVDRL 339 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~-~~~~l~~l~~lViDEa 339 (474)
|+|||+||.|+++.+..+ ...++.+..++||.....+...+.. +++|+|+|||+|.+++.. ..+.++++++||||||
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGN-GINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHH-CCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcC-CCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 999999999999999998 5568999999999999988888888 799999999999998877 4578999999999999
Q ss_pred cccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCc
Q 011963 340 DSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSI 384 (474)
Q Consensus 340 d~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~ 384 (474)
|+|++ ...+..|+..++..+|+++||||+|+.+..+++.+|+++.
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99988 8889999999999999999999999999999999998765
No 18
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1.7e-36 Score=293.79 Aligned_cols=194 Identities=17% Similarity=0.251 Sum_probs=178.4
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.++++|..+||..|+|+ |.++|+.++.|+|++++|||| ||||++|++|++..+.... .++++||
T Consensus 50 l~~~l~~~l~~~g~~~~~~~-----Q~~~i~~i~~~~~~lv~a~TG-sGKT~~~~~~il~~l~~~~-------~~~~~li 116 (249)
T 3ber_A 50 VTDVLCEACDQLGWTKPTKI-----QIEAIPLALQGRDIIGLAETG-SGKTGAFALPILNALLETP-------QRLFALV 116 (249)
T ss_dssp CCHHHHHHHHHTTCCSCCHH-----HHHHHHHHHTTCCEEEECCTT-SCHHHHHHHHHHHHHHHSC-------CSSCEEE
T ss_pred CCHHHHHHHHHcCCCCCCHH-----HHHHHHHHhCCCCEEEEcCCC-CCchhHhHHHHHHHHhcCC-------CCceEEE
Confidence 88999999999999999999 999999999999999999999 9999999999999887642 4678999
Q ss_pred EeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHc-CCCCCCCcceEEeccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL-KAIDVSGVSLLVVDRL 339 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~-~~~~l~~l~~lViDEa 339 (474)
|+|||+|+.|+++.+..+ ...++++..++||.....+...+.. +++|+|+||++|++++.. +.+.+.++++||||||
T Consensus 117 l~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEa 195 (249)
T 3ber_A 117 LTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAK-KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEA 195 (249)
T ss_dssp ECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHT-CCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSH
T ss_pred EeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcC-CCCEEEECHHHHHHHHHcCCCcCccccCEEEEcCh
Confidence 999999999999999998 4458999999999998888777777 899999999999999886 6678999999999999
Q ss_pred cccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEcc
Q 011963 340 DSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLN 390 (474)
Q Consensus 340 d~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~ 390 (474)
|+|++ ...+..|+..++.++|+++||||++..+.++++.+|.+|. .|.++
T Consensus 196 h~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~-~i~v~ 248 (249)
T 3ber_A 196 DRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPV-KCAVS 248 (249)
T ss_dssp HHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCE-EEECC
T ss_pred hhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCE-EEEec
Confidence 99987 7889999999999999999999999999999999999997 66654
No 19
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.9e-36 Score=300.69 Aligned_cols=261 Identities=16% Similarity=0.214 Sum_probs=224.6
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcC-CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA-KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLL 260 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~al 260 (474)
+++.++++|..+||..|+|+ |.++|+.++.| ++++++|||| ||||++|++|++..+... .++++|
T Consensus 13 l~~~~~~~l~~~g~~~~~~~-----Q~~~i~~~~~~~~~~l~~~~TG-sGKT~~~~~~~~~~~~~~--------~~~~~l 78 (367)
T 1hv8_A 13 LSDNILNAIRNKGFEKPTDI-----QMKVIPLFLNDEYNIVAQARTG-SGKTASFAIPLIELVNEN--------NGIEAI 78 (367)
T ss_dssp CCHHHHHHHHHHTCCSCCHH-----HHHHHHHHHHTCSEEEEECCSS-SSHHHHHHHHHHHHSCSS--------SSCCEE
T ss_pred CCHHHHHHHHHcCCCCCCHH-----HHHHHHHHhCCCCCEEEECCCC-ChHHHHHHHHHHHHhccc--------CCCcEE
Confidence 88999999999999999999 99999999999 6999999999 999999999999765432 477999
Q ss_pred EEeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccc
Q 011963 261 FLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339 (474)
Q Consensus 261 il~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEa 339 (474)
||+||++|+.|+++.+..+ ...++.+..++||.....+...+. +++|+|+||++|..++....+.+.++++||||||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEa 156 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK--NANIVVGTPGRILDHINRGTLNLKNVKYFILDEA 156 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH--TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC--CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCc
Confidence 9999999999999999998 445899999999999888777776 4899999999999999998888999999999999
Q ss_pred cccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHH
Q 011963 340 DSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILK 416 (474)
Q Consensus 340 d~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~ 416 (474)
|++.+ ...+..++..++...|++++|||++..+..++..++.++. .+.... ..++.+.++.+. ...+...
T Consensus 157 h~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~-~~~~~~~ 229 (367)
T 1hv8_A 157 DEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYS-FIKAKI-----NANIEQSYVEVN-ENERFEA 229 (367)
T ss_dssp HHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEE-EEECCS-----SSSSEEEEEECC-GGGHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCe-EEEecC-----CCCceEEEEEeC-hHHHHHH
Confidence 99987 6788889999989999999999999999899999988765 444332 236888888886 5667754
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 417 GIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 417 l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
+..++ . .. ..++||||+++..++.++..|...|+.+. .+|+.+++.|++
T Consensus 230 l~~~l----~-~~---~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 286 (367)
T 1hv8_A 230 LCRLL----K-NK---EFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQ 286 (367)
T ss_dssp HHHHH----C-ST---TCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHT
T ss_pred HHHHH----h-cC---CCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHc
Confidence 44443 3 22 67999999999999999999999998875 567888999975
No 20
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.4e-36 Score=282.74 Aligned_cols=189 Identities=17% Similarity=0.240 Sum_probs=174.7
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.++++|..+||..|+|+ |.++|+.++.|+|++++|||| ||||++|++|++..+... ..++++||
T Consensus 10 l~~~l~~~l~~~g~~~~~~~-----Q~~~i~~~~~~~~~lv~apTG-sGKT~~~~~~~~~~~~~~-------~~~~~~li 76 (206)
T 1vec_A 10 LKRELLMGIFEMGWEKPSPI-----QEESIPIALSGRDILARAKNG-TGKSGAYLIPLLERLDLK-------KDNIQAMV 76 (206)
T ss_dssp CCHHHHHHHHTTTCCSCCHH-----HHHHHHHHHTTCCEEEECCSS-STTHHHHHHHHHHHCCTT-------SCSCCEEE
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHccCCCEEEECCCC-CchHHHHHHHHHHHhccc-------CCCeeEEE
Confidence 88999999999999999998 999999999999999999999 999999999999876432 14779999
Q ss_pred EeccHHHHHHHHHHHHhc-ccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEa 339 (474)
|+||++|+.|+++.+..+ ... ++.+..++||.....+...+.. +++|+|+||++|.+++..+.+.+.++++||||||
T Consensus 77 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 155 (206)
T 1vec_A 77 IVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDD-TVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEA 155 (206)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTS-CCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETH
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCC-CCCEEEeCHHHHHHHHHcCCcCcccCCEEEEECh
Confidence 999999999999999998 445 7899999999999888887777 8999999999999999998888999999999999
Q ss_pred cccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCc
Q 011963 340 DSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSI 384 (474)
Q Consensus 340 d~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~ 384 (474)
|++++ ...+..|+..++.++|+++||||+|..+..++..++.+|.
T Consensus 156 h~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~ 203 (206)
T 1vec_A 156 DKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPY 203 (206)
T ss_dssp HHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCE
T ss_pred HHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCe
Confidence 99988 7888999999998999999999999999999999999986
No 21
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=5e-37 Score=294.92 Aligned_cols=195 Identities=15% Similarity=0.239 Sum_probs=165.9
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.++++|..+||..|+|+ |.++|+.++.|+|++++|||| ||||++|++|+++.+... ..++++||
T Consensus 37 l~~~l~~~l~~~g~~~~~~~-----Q~~ai~~i~~~~~~li~apTG-sGKT~~~~l~~l~~l~~~-------~~~~~~li 103 (237)
T 3bor_A 37 LKESLLRGIYAYGFEKPSAI-----QQRAIIPCIKGYDVIAQAQSG-TGKTATFAISILQQLEIE-------FKETQALV 103 (237)
T ss_dssp CCHHHHHHHHHHTCCSCCHH-----HHHHHHHHHTTCCEEECCCSS-HHHHHHHHHHHHHHCCTT-------SCSCCEEE
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHhCCCCEEEECCCC-CcHHHHHHHHHHHHHHhc-------CCCceEEE
Confidence 88999999999999999999 999999999999999999999 999999999999876532 14679999
Q ss_pred EeccHHHHHHHHHHHHhcc-cCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 262 LVSSQEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l~-~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
|+|||+|+.|+++.+..+. ..++.+..++||.....+...+..+.++|+|+||++|++++..+.+.+.++++|||||||
T Consensus 104 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 183 (237)
T 3bor_A 104 LAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD 183 (237)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHH
T ss_pred EECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCch
Confidence 9999999999999999984 458999999999988888878877459999999999999999988889999999999999
Q ss_pred ccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEcc
Q 011963 341 SLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLN 390 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~ 390 (474)
+|++ ...+..|+..++..+|+++||||+|+.+.+++..++++|. .|.++
T Consensus 184 ~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~-~i~v~ 235 (237)
T 3bor_A 184 EMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPI-RILVK 235 (237)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCE-EEC--
T ss_pred HhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCE-EEEec
Confidence 9986 7788999999999999999999999999999999999997 66654
No 22
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1e-36 Score=288.86 Aligned_cols=195 Identities=14% Similarity=0.160 Sum_probs=175.9
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.++++|.++||..|+|+ |.++|+.+++|+|++++|||| ||||++|++|++..+... ..++++||
T Consensus 11 l~~~l~~~l~~~g~~~~~~~-----Q~~~i~~~~~~~~~lv~a~TG-sGKT~~~~~~~l~~l~~~-------~~~~~~li 77 (219)
T 1q0u_A 11 FQPFIIEAIKTLRFYKPTEI-----QERIIPGALRGESMVGQSQTG-TGKTHAYLLPIMEKIKPE-------RAEVQAVI 77 (219)
T ss_dssp CCHHHHHHHHHTTCCSCCHH-----HHHHHHHHHHTCCEEEECCSS-HHHHHHHHHHHHHHCCTT-------SCSCCEEE
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHhCCCCEEEECCCC-ChHHHHHHHHHHHHHHhC-------cCCceEEE
Confidence 78899999999999999999 999999999999999999999 999999999999877542 14679999
Q ss_pred EeccHHHHHHHHHHHHhc-ccC----CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEe
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAF----GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVV 336 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~----~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lVi 336 (474)
|+||++|+.|+++.+..+ ... ++.+..++||.+...+...+.. +++|+|+||++|.+++..+.+.+.++++|||
T Consensus 78 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 78 TAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNV-QPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSS-CCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred EcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCC-CCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 999999999999999998 333 6889999999887776666665 7999999999999999998889999999999
Q ss_pred ccccccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccC
Q 011963 337 DRLDSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQ 391 (474)
Q Consensus 337 DEad~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~ 391 (474)
||||++++ ...+..|+..++.++|+++||||+|..+.++++.++.+|. .|.+..
T Consensus 157 DEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~-~~~~~~ 213 (219)
T 1q0u_A 157 DEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPT-FVHVLE 213 (219)
T ss_dssp CSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCE-EEECC-
T ss_pred cCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCe-EEEeec
Confidence 99999986 7889999999999999999999999999999999999997 676654
No 23
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=3.2e-36 Score=287.85 Aligned_cols=192 Identities=16% Similarity=0.260 Sum_probs=174.3
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.++++|..+||..|+|+ |.++|+.++.|+|++++|||| ||||++|++|++..+.... .++++||
T Consensus 31 l~~~l~~~l~~~g~~~~~~~-----Q~~~i~~~~~~~~~l~~a~TG-sGKT~~~~l~~l~~l~~~~-------~~~~~li 97 (230)
T 2oxc_A 31 LSRPVLEGLRAAGFERPSPV-----QLKAIPLGRCGLDLIVQAKSG-TGKTCVFSTIALDSLVLEN-------LSTQILI 97 (230)
T ss_dssp CCHHHHHHHHHTTCCSCCHH-----HHHHHHHHHTTCCEEEECCTT-SSHHHHHHHHHHHHCCTTS-------CSCCEEE
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHhCCCCEEEECCCC-CcHHHHHHHHHHHHHHhcC-------CCceEEE
Confidence 88999999999999999999 999999999999999999999 9999999999998775421 4679999
Q ss_pred EeccHHHHHHHHHHHHhc-ccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEa 339 (474)
|+||++|+.|+++.+..+ ... ++++..++||.....+...+. +++|+|+||++|.+++..+.+.+.++++||||||
T Consensus 98 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEa 175 (230)
T 2oxc_A 98 LAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK--KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEA 175 (230)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT--SCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSH
T ss_pred EeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc--CCCEEEECHHHHHHHHhcCCcccccCCEEEeCCc
Confidence 999999999999999998 344 899999999999887766664 5899999999999999988888999999999999
Q ss_pred cccCC----hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEc
Q 011963 340 DSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSL 389 (474)
Q Consensus 340 d~ll~----~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v 389 (474)
|++++ ...+..|+..++..+|+++||||+|..+.+++..++++|. .|.+
T Consensus 176 h~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~-~i~~ 228 (230)
T 2oxc_A 176 DKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPT-FVRL 228 (230)
T ss_dssp HHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCE-EECC
T ss_pred hHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCe-EEEc
Confidence 99976 6788899999999999999999999999999999999997 6654
No 24
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=7.1e-36 Score=286.09 Aligned_cols=198 Identities=15% Similarity=0.188 Sum_probs=175.3
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.++++|..+||..|+|+ |.++|+.++.|+|++++|||| ||||++|++|+++.+....... ..++++||
T Consensus 32 l~~~l~~~l~~~~~~~~~~~-----Q~~~i~~~~~~~~~li~a~TG-sGKT~~~~~~~l~~l~~~~~~~---~~~~~~li 102 (236)
T 2pl3_A 32 LSKKTLKGLQEAQYRLVTEI-----QKQTIGLALQGKDVLGAAKTG-SGKTLAFLVPVLEALYRLQWTS---TDGLGVLI 102 (236)
T ss_dssp CCHHHHHHHHHTTCCBCCHH-----HHHHHHHHHTTCCEEEECCTT-SCHHHHHHHHHHHHHHHTTCCG---GGCCCEEE
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHhCCCCEEEEeCCC-CcHHHHHHHHHHHHHHhhcccc---cCCceEEE
Confidence 88999999999999999999 999999999999999999999 9999999999999987643211 14789999
Q ss_pred EeccHHHHHHHHHHHHhcc-cCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcC-CCCCCCcceEEeccc
Q 011963 262 LVSSQEKAAKVRSVCKPLK-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK-AIDVSGVSLLVVDRL 339 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l~-~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~-~~~l~~l~~lViDEa 339 (474)
|+||++|+.|+++.+..+. ..++++..++||.+...+...+. +++|+|+||++|.+++... .+.+.++++||||||
T Consensus 103 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 180 (236)
T 2pl3_A 103 ISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERIN--NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEA 180 (236)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHT--TCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTH
T ss_pred EeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCC--CCCEEEECHHHHHHHHHhcCCcccccccEEEEeCh
Confidence 9999999999999999984 45899999999988877766663 6899999999999998764 578899999999999
Q ss_pred cccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccC
Q 011963 340 DSLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQ 391 (474)
Q Consensus 340 d~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~ 391 (474)
|+|++ ...+..|+..++..+|+++||||+++.+..+++.++.+|. .|.++.
T Consensus 181 h~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~-~i~~~~ 234 (236)
T 2pl3_A 181 DRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPE-YVWVHE 234 (236)
T ss_dssp HHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCE-EEECCC
T ss_pred HHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCE-EEEeCC
Confidence 99987 7889999999999999999999999999999999999997 777653
No 25
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.3e-35 Score=281.11 Aligned_cols=193 Identities=16% Similarity=0.209 Sum_probs=175.3
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.++++|..+||..|+|+ |.++|+.+++|+|++++|||| ||||++|++|++..+... ..++++||
T Consensus 21 l~~~l~~~l~~~g~~~~~~~-----Q~~~i~~~~~~~~~li~~~TG-sGKT~~~~~~~~~~~~~~-------~~~~~~li 87 (220)
T 1t6n_A 21 LKPELLRAIVDCGFEHPSEV-----QHECIPQAILGMDVLCQAKSG-MGKTAVFVLATLQQLEPV-------TGQVSVLV 87 (220)
T ss_dssp CCHHHHHHHHHTTCCCCCHH-----HHHHHHHHHTTCCEEEECCTT-SCHHHHHHHHHHHHCCCC-------TTCCCEEE
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHhCCCCEEEECCCC-CchhhhhhHHHHHhhhcc-------CCCEEEEE
Confidence 88999999999999999988 999999999999999999999 999999999999776432 14679999
Q ss_pred EeccHHHHHHHHHHHHhc-ccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEa 339 (474)
|+||++|+.|+++.++.+ ... ++++..++||.+...+...+..+.++|+|+||++|..++....+.+.++++||||||
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 167 (220)
T 1t6n_A 88 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 167 (220)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESH
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCH
Confidence 999999999999999998 444 899999999999888888887756899999999999999998888999999999999
Q ss_pred cccCC----hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEE
Q 011963 340 DSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLS 388 (474)
Q Consensus 340 d~ll~----~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~ 388 (474)
|++++ ...+..|+..++.++|+++||||+++.+.++++.++.+|. .|.
T Consensus 168 h~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~-~i~ 219 (220)
T 1t6n_A 168 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPM-EIF 219 (220)
T ss_dssp HHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCE-EEE
T ss_pred HHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCe-EEe
Confidence 99986 5788889999998999999999999999999999999997 554
No 26
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=291.77 Aligned_cols=198 Identities=19% Similarity=0.248 Sum_probs=170.4
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.++++|.++||..|+|+ |.++|+.++.|+|++++|||| ||||++|++|++..+.... ..++++||
T Consensus 36 l~~~l~~~l~~~g~~~~~~~-----Q~~~i~~~~~~~~~l~~a~TG-sGKT~~~~l~~l~~l~~~~------~~~~~~li 103 (245)
T 3dkp_A 36 INSRLLQNILDAGFQMPTPI-----QMQAIPVMLHGRELLASAPTG-SGKTLAFSIPILMQLKQPA------NKGFRALI 103 (245)
T ss_dssp CCHHHHHHHHHTTCCSCCHH-----HHHHHHHHHTTCCEEEECCTT-SCHHHHHHHHHHHHHCSCC------SSSCCEEE
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHhCCCCEEEECCCC-CcHHHHHHHHHHHHHhhcc------cCCceEEE
Confidence 88999999999999999999 999999999999999999999 9999999999998875421 24779999
Q ss_pred EeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcC--CCCCCCcceEEecc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK--AIDVSGVSLLVVDR 338 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~--~~~l~~l~~lViDE 338 (474)
|+||++||.|+++.+..+ ...++++..++|+.............+++|+|+||++|.+++... .+.++++++|||||
T Consensus 104 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDE 183 (245)
T 3dkp_A 104 ISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDE 183 (245)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESS
T ss_pred EeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeC
Confidence 999999999999999998 555899988888765444333333347999999999999999875 57899999999999
Q ss_pred ccccCC------hhHHHHHHhhC-CCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCC
Q 011963 339 LDSLSK------GDTLSLIRQSI-SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQS 392 (474)
Q Consensus 339 ad~ll~------~~~l~~Il~~l-~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~ 392 (474)
||+|++ ...+..++..+ +.++|+++||||+|+.+..++..++++|+ .|.++..
T Consensus 184 ah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~-~i~~~~~ 243 (245)
T 3dkp_A 184 SDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVI-SVSIGAR 243 (245)
T ss_dssp HHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCE-EEEECC-
T ss_pred hHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCE-EEEeCCC
Confidence 999974 66777777766 46789999999999999999999999998 7877653
No 27
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.7e-35 Score=276.89 Aligned_cols=196 Identities=18% Similarity=0.234 Sum_probs=176.5
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.++++|..+||..|+|+ |.++|+.+++|+|++++|||| ||||++|++|++..+..... ...++++||
T Consensus 8 l~~~l~~~l~~~~~~~~~~~-----Q~~~i~~~~~~~~~li~~~TG-sGKT~~~~~~~~~~l~~~~~----~~~~~~~li 77 (207)
T 2gxq_A 8 LKPEILEALHGRGLTTPTPI-----QAAALPLALEGKDLIGQARTG-TGKTLAFALPIAERLAPSQE----RGRKPRALV 77 (207)
T ss_dssp CCHHHHHHHHHTTCCSCCHH-----HHHHHHHHHTTCCEEEECCTT-SCHHHHHHHHHHHHCCCCCC----TTCCCSEEE
T ss_pred CCHHHHHHHHHcCCCCCCHH-----HHHHHHHHcCCCCEEEECCCC-ChHHHHHHHHHHHHHhhccc----cCCCCcEEE
Confidence 78899999999999999998 999999999999999999999 99999999999988764221 124789999
Q ss_pred EeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccc
Q 011963 262 LVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS 341 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ 341 (474)
++||++|+.|+++.+..+.. ++++..++||.....+...+.. +++|+|+||++|.+++..+.+.+.++++|||||||+
T Consensus 78 l~P~~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~ 155 (207)
T 2gxq_A 78 LTPTRELALQVASELTAVAP-HLKVVAVYGGTGYGKQKEALLR-GADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE 155 (207)
T ss_dssp ECSSHHHHHHHHHHHHHHCT-TSCEEEECSSSCSHHHHHHHHH-CCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH
T ss_pred EECCHHHHHHHHHHHHHHhh-cceEEEEECCCChHHHHHHhhC-CCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH
Confidence 99999999999999999843 3788899999988887777877 799999999999999999888999999999999999
Q ss_pred cCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEcc
Q 011963 342 LSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLN 390 (474)
Q Consensus 342 ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~ 390 (474)
+++ ...+..++..++..+|+++||||+++.+..+++.++.+|. .|.+.
T Consensus 156 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~-~i~~~ 206 (207)
T 2gxq_A 156 MLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPV-LINVI 206 (207)
T ss_dssp HHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCE-EEECC
T ss_pred hhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCe-EEEcC
Confidence 987 7889999999999999999999999999999999999997 66653
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.6e-35 Score=303.90 Aligned_cols=252 Identities=10% Similarity=0.020 Sum_probs=200.1
Q ss_pred HHHHHHHHhC-CCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEE
Q 011963 184 NAIENAMRHD-GVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (474)
Q Consensus 184 ~~i~~~l~~~-g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil 262 (474)
+.+.+.|++. || .|||+ |.++||.++.|+|++++|||| ||||++|++|++..+. .++++|||
T Consensus 8 ~~~~~~l~~~~~~-~~~~~-----Q~~~i~~i~~~~~~lv~apTG-sGKT~~~l~~~~~~~~----------~~~~~lil 70 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGY-----QRLWAKRIVQGKSFTMVAPTG-VGKTTFGMMTALWLAR----------KGKKSALV 70 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHH-----HHHHHHHHTTTCCEECCSCSS-SSHHHHHHHHHHHHHT----------TTCCEEEE
T ss_pred HHHHHHHHHhcCC-CCCHH-----HHHHHHHHhcCCCEEEEeCCC-CCHHHHHHHHHHHHhc----------CCCEEEEE
Confidence 3445555553 66 79988 999999999999999999999 9999999999887651 47799999
Q ss_pred eccHHHHHHHHHHHHhcccCCcEEEEEecCCCH---HHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccc
Q 011963 263 VSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAI---DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRL 339 (474)
Q Consensus 263 ~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~---~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEa 339 (474)
+||++||.|+++.+..+...++++..++||.+. ..+...+..+.++|+|+||++|++++.. +.+.++++||||||
T Consensus 71 ~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEa 148 (414)
T 3oiy_A 71 FPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDV 148 (414)
T ss_dssp ESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCH
T ss_pred ECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeCh
Confidence 999999999999999984478999999999998 6677788774599999999999988875 66779999999999
Q ss_pred cccC-------------C-hhH-HHHHHhhCC-----------CCCcEEEEEcc-CCccHH-HHHHHhhcCCceEEEccC
Q 011963 340 DSLS-------------K-GDT-LSLIRQSIS-----------GKPHTVVFNDC-LTYTSV-PAVQNLLLGSINRLSLNQ 391 (474)
Q Consensus 340 d~ll-------------~-~~~-l~~Il~~l~-----------~~~q~llfSAT-~~~~v~-~l~~~~l~~p~~~v~v~~ 391 (474)
|+++ . ..+ +..++..++ ..+|+++|||| .|..+. .+...++. +.+..
T Consensus 149 H~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-----~~~~~ 223 (414)
T 3oiy_A 149 DAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-----FTVGR 223 (414)
T ss_dssp HHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS-----CCSSC
T ss_pred HhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc-----cCcCc
Confidence 9874 2 344 788888876 88999999999 666554 34444433 22232
Q ss_pred CcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc----chHHHH
Q 011963 392 SVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS----TGSNCI 467 (474)
Q Consensus 392 ~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~----~~r~~~ 467 (474)
. .....++.+.++.++ +...|..+|... +.++||||+|+..|+.++..|...|+++. ..+..
T Consensus 224 ~-~~~~~~i~~~~~~~~----~~~~l~~~l~~~--------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~r~- 289 (414)
T 3oiy_A 224 L-VSVARNITHVRISSR----SKEKLVELLEIF--------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKN- 289 (414)
T ss_dssp C-CCCCCSEEEEEESSC----CHHHHHHHHHHH--------CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCHHHH-
T ss_pred c-ccccccchheeeccC----HHHHHHHHHHHc--------CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCcchH-
Confidence 2 355667888887763 455555666653 57999999999999999999999999885 22333
Q ss_pred HHHhhc
Q 011963 468 VSHIKN 473 (474)
Q Consensus 468 i~~Fk~ 473 (474)
+++|++
T Consensus 290 ~~~f~~ 295 (414)
T 3oiy_A 290 FEDFKV 295 (414)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 888875
No 29
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.1e-35 Score=281.99 Aligned_cols=194 Identities=14% Similarity=0.226 Sum_probs=166.8
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.++++|..+||..|+|+ |.++|+.++.|+|++++|||| ||||++|++|+++.+... ..++++||
T Consensus 21 l~~~l~~~l~~~g~~~~~~~-----Q~~~i~~~~~~~~~lv~~pTG-sGKT~~~~~~~l~~l~~~-------~~~~~~li 87 (224)
T 1qde_A 21 LDENLLRGVFGYGFEEPSAI-----QQRAIMPIIEGHDVLAQAQSG-TGKTGTFSIAALQRIDTS-------VKAPQALM 87 (224)
T ss_dssp CCHHHHHHHHHHTCCSCCHH-----HHHHHHHHHTTCCEEEECCTT-SSHHHHHHHHHHHHCCTT-------CCSCCEEE
T ss_pred CCHHHHHHHHHCCCCCCcHH-----HHHHHHHHhcCCCEEEECCCC-CcHHHHHHHHHHHHHhcc-------CCCceEEE
Confidence 88999999999999999988 999999999999999999999 999999999999877542 24779999
Q ss_pred EeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
|+||++|+.|+++.+..+ ...++++..++||.....+...+.. ++|+|+||++|++++....+.++++.+|||||||
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah 165 (224)
T 1qde_A 88 LAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD--AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD 165 (224)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT--CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred EECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC--CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh
Confidence 999999999999999998 4458999999999887777666653 8999999999999999988889999999999999
Q ss_pred ccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccC
Q 011963 341 SLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQ 391 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~ 391 (474)
++++ ...+..++..++..+|+++||||+++.+.+++..++.+|. .|.+..
T Consensus 166 ~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~-~i~~~~ 218 (224)
T 1qde_A 166 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPV-RILVKK 218 (224)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCE-EEC---
T ss_pred HHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCE-EEEecC
Confidence 9987 7789999999999999999999999999999999999997 676654
No 30
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.8e-34 Score=288.45 Aligned_cols=256 Identities=17% Similarity=0.204 Sum_probs=214.7
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
|++.|.++|..+||..|+|+ |.++|+.+++|++++++|||| ||||++|++|++.. +.++||
T Consensus 1 l~~~i~~~l~~~g~~~l~~~-----Q~~~i~~i~~~~~~lv~~~TG-sGKT~~~~~~~~~~-------------~~~~li 61 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEV-----QSKTIPLMLQGKNVVVRAKTG-SGKTAAYAIPILEL-------------GMKSLV 61 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHH-----HHHHHHHHHTTCCEEEECCTT-SSHHHHHHHHHHHH-------------TCCEEE
T ss_pred CCHHHHHHHHHcCCCCCCHH-----HHHHHHHHhcCCCEEEEcCCC-CcHHHHHHHHHHhh-------------cCCEEE
Confidence 46789999999999999988 999999999999999999999 99999999999852 558999
Q ss_pred EeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 262 LVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
|+||++|+.|+++.+..+ ...++++..++||.....+...+.. ++|+|+||++|..++....+.+.+++++||||||
T Consensus 62 v~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah 139 (337)
T 2z0m_A 62 VTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN--ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEAD 139 (337)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT--CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHH
T ss_pred EeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC--CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChH
Confidence 999999999999999998 4558999999999998887777654 8999999999999999888889999999999999
Q ss_pred ccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHH
Q 011963 341 SLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKG 417 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l 417 (474)
++.+ ...+..++..++...|+++||||++..+...+..++.++. .+... ....++.+.++.+.... +.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~-~~--- 210 (337)
T 2z0m_A 140 LMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYE-EIEAC----IGLANVEHKFVHVKDDW-RS--- 210 (337)
T ss_dssp HHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCE-EEECS----GGGGGEEEEEEECSSSS-HH---
T ss_pred HhhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCce-eeecc----cccCCceEEEEEeChHH-HH---
Confidence 9987 7788889999999999999999999999999999988875 44322 33456788888776432 22
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhC----CCcccchHHHHHHHhhc
Q 011963 418 IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK----GYSISTGSNCIVSHIKN 473 (474)
Q Consensus 418 ~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~----gi~v~~~r~~~i~~Fk~ 473 (474)
.+ ..+.... ..++||||++++.++.++..|... |--...+|..++++|++
T Consensus 211 --~~-~~~~~~~---~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~r~~~~~~f~~ 264 (337)
T 2z0m_A 211 --KV-QALRENK---DKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFRE 264 (337)
T ss_dssp --HH-HHHHTCC---CSSEEEECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHHHHHHHT
T ss_pred --HH-HHHHhCC---CCcEEEEEcCHHHHHHHHHHhhhhhhhcCCCCHHHHHHHHHHHHc
Confidence 12 2333444 789999999999999999999743 21223678889999975
No 31
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-34 Score=308.83 Aligned_cols=265 Identities=15% Similarity=0.203 Sum_probs=201.0
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcC--CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFL 259 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~a 259 (474)
+++.++++|...||..|+|+ |.++|+.++.| ++++++|||| ||||++|++|++..+.... .++++
T Consensus 126 l~~~~~~~l~~~g~~~p~~~-----Q~~ai~~i~~~~~~~~ll~apTG-sGKT~~~~~~il~~l~~~~-------~~~~v 192 (508)
T 3fho_A 126 XXXXXXXXXXXXXXXXXXKI-----QEKALPLLLSNPPRNMIGQSQSG-TGKTAAFALTMLSRVDASV-------PKPQA 192 (508)
T ss_dssp -------------CEECCCT-----TSSSHHHHHCSSCCCEEEECCSS-TTSHHHHHHHHHHHSCTTC-------CSCCE
T ss_pred cccccccccccccccCcHHH-----HHHHHHHHHcCCCCCEEEECCCC-ccHHHHHHHHHHHHHHhCC-------CCceE
Confidence 78889999999999999999 99999999998 8999999999 9999999999998775431 46799
Q ss_pred EEEeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecc
Q 011963 260 LFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDR 338 (474)
Q Consensus 260 lil~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDE 338 (474)
|||+||++|+.|+++.+..+ ...++.+...+++...... .. +++|+|+||++|+.++....+.+.++.+|||||
T Consensus 193 Lvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDE 267 (508)
T 3fho_A 193 ICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGA----KI-DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDE 267 (508)
T ss_dssp EEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CC-CCSEEEECHHHHHHHHHTTCSCCTTCCEEEECC
T ss_pred EEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccccc----cC-CCCEEEECHHHHHHHHHcCCccccCCCEEEEec
Confidence 99999999999999999998 4446777666666443321 22 689999999999999999888999999999999
Q ss_pred ccccCC----hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHH
Q 011963 339 LDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKI 414 (474)
Q Consensus 339 ad~ll~----~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~ 414 (474)
||++.+ ...+..|+..++.+.|++++|||+++.+..++..++.++. .+.+... ......+.+.+..+.....+.
T Consensus 268 aH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~-~i~~~~~-~~~~~~~~~~~~~~~~~~~k~ 345 (508)
T 3fho_A 268 ADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNAN-EIRLKTE-ELSVEGIKQLYMDCQSEEHKY 345 (508)
T ss_dssp HHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCE-EECCCCC-C----CCCCEEEEC--CHHHH
T ss_pred hhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCe-EEEeccc-cCCcccceEEEEECCchHHHH
Confidence 999987 6778889999999999999999999999999999998886 6666544 455667888888887666677
Q ss_pred HHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 415 LKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 415 ~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
..+..++.... .+++||||+++..|+.++..|...|+.+. .+|..+++.|++
T Consensus 346 ----~~l~~ll~~~~---~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~ 405 (508)
T 3fho_A 346 ----NVLVELYGLLT---IGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRV 405 (508)
T ss_dssp ----HHHHHHHC------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHS
T ss_pred ----HHHHHHHHhcC---CCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHC
Confidence 44445555544 78999999999999999999999988876 467777888864
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=7.4e-33 Score=299.51 Aligned_cols=261 Identities=13% Similarity=0.104 Sum_probs=200.0
Q ss_pred hHHHHHHHHHh-CCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEE
Q 011963 182 CLNAIENAMRH-DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLL 260 (474)
Q Consensus 182 l~~~i~~~l~~-~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~al 260 (474)
+++.+.+.|+. .||..|+|+ |.++|+.++.|+|++++|||| +|||+||++|++. ...++|
T Consensus 28 l~~~l~~~L~~~fg~~~~rp~-----Q~~~i~~il~g~d~lv~~pTG-sGKTl~~~lpal~-------------~~g~~l 88 (591)
T 2v1x_A 28 WSGKVKDILQNVFKLEKFRPL-----QLETINVTMAGKEVFLVMPTG-GGKSLCYQLPALC-------------SDGFTL 88 (591)
T ss_dssp THHHHHHHHHHTSCCCSCCTT-----HHHHHHHHHTTCCEEEECCTT-SCTTHHHHHHHHT-------------SSSEEE
T ss_pred CCHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHcCCCEEEEECCC-ChHHHHHHHHHHH-------------cCCcEE
Confidence 78889999998 599999999 999999999999999999999 9999999999983 245899
Q ss_pred EEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHH-----hcCCCcEEEEChHHHH---HHHHc--CCCCCCC
Q 011963 261 FLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGL-----RSCEPEFLVSTPERLL---KLVSL--KAIDVSG 330 (474)
Q Consensus 261 il~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l-----~~~~~~IlV~TP~rL~---~ll~~--~~~~l~~ 330 (474)
||+||++|+.|+.+.+..+ |+.+..++|+.+...+...+ ..++++|||+||++|. .++.. ..+.+.+
T Consensus 89 VisP~~~L~~q~~~~l~~~---gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~ 165 (591)
T 2v1x_A 89 VICPLISLMEDQLMVLKQL---GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARR 165 (591)
T ss_dssp EECSCHHHHHHHHHHHHHH---TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTC
T ss_pred EEeCHHHHHHHHHHHHHhc---CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccC
Confidence 9999999999999998887 88999999998876554332 2347999999999884 22221 2445778
Q ss_pred cceEEeccccccCC-----hhHHHH--HHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEE
Q 011963 331 VSLLVVDRLDSLSK-----GDTLSL--IRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQS 403 (474)
Q Consensus 331 l~~lViDEad~ll~-----~~~l~~--Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~ 403 (474)
+.+|||||||++++ .+.+.. ++....+++|+++||||+++.+...+..++..+. .+.+... ...+++...
T Consensus 166 i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~-~~~~~~~--~~r~nl~~~ 242 (591)
T 2v1x_A 166 FTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEK-CFTFTAS--FNRPNLYYE 242 (591)
T ss_dssp EEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCS-CEEEECC--CCCTTEEEE
T ss_pred CcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCC-cEEEecC--CCCcccEEE
Confidence 99999999999986 333332 3333345799999999999999888888887664 2222222 234456555
Q ss_pred EEEcCCchhHHHHHHHHHHHHhhc-cCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 404 VNVCASDEEKILKGIQVLDHAYGD-HFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 404 ~~~~~~~~~K~~~l~~lL~~ll~~-~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
+..... .+...+ ..|..++.. +. ..++||||+|++.|+.++..|...|+.+. .+|..++++|++
T Consensus 243 v~~~~~--~~~~~~-~~l~~~l~~~~~---~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~ 315 (591)
T 2v1x_A 243 VRQKPS--NTEDFI-EDIVKLINGRYK---GQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSA 315 (591)
T ss_dssp EEECCS--SHHHHH-HHHHHHHTTTTT---TCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEeCCC--cHHHHH-HHHHHHHHHhcc---CCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHc
Confidence 554432 122222 344444443 33 78999999999999999999999999876 678889999975
No 33
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=8.1e-34 Score=325.51 Aligned_cols=251 Identities=11% Similarity=0.031 Sum_probs=202.6
Q ss_pred HHHHHHH-hCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe
Q 011963 185 AIENAMR-HDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV 263 (474)
Q Consensus 185 ~i~~~l~-~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~ 263 (474)
.+.+.+. ..|| .|||+ |.++||.++.|+|++++|||| ||||++|++|++..+. .++++|||+
T Consensus 66 ~~~~~~~~~~gf-~pt~i-----Q~~ai~~il~g~dvlv~ApTG-SGKTl~~l~~il~~~~----------~~~~~Lil~ 128 (1104)
T 4ddu_A 66 DFRSFFKKKFGK-DLTGY-----QRLWAKRIVQGKSFTMVAPTG-VGKTTFGMMTALWLAR----------KGKKSALVF 128 (1104)
T ss_dssp HHHHHHHHHSSS-CCCHH-----HHHHHHHHTTTCCEEECCSTT-CCHHHHHHHHHHHHHT----------TTCCEEEEE
T ss_pred HHHHHHHHhcCC-CCCHH-----HHHHHHHHHcCCCEEEEeCCC-CcHHHHHHHHHHHHHh----------cCCeEEEEe
Confidence 3444443 3688 59999 999999999999999999999 9999998888887661 478999999
Q ss_pred ccHHHHHHHHHHHHhcccCCcEEEEEecCCCH---HHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 264 SSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAI---DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 264 PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~---~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
|||+||.|+++.+..+...+++++.++||.+. ..+...+..+.++|||+|||+|++++.. +.++++++|||||||
T Consensus 129 PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH 206 (1104)
T 4ddu_A 129 PTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVD 206 (1104)
T ss_dssp SSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHH
T ss_pred chHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCC
Confidence 99999999999999987568999999999987 7778888884599999999999998875 677899999999998
Q ss_pred ccCC--------------hhH-HHHHHhhCC-----------CCCcEEEEEcc-CCccHHH-HHHHhhcCCceEEEccCC
Q 011963 341 SLSK--------------GDT-LSLIRQSIS-----------GKPHTVVFNDC-LTYTSVP-AVQNLLLGSINRLSLNQS 392 (474)
Q Consensus 341 ~ll~--------------~~~-l~~Il~~l~-----------~~~q~llfSAT-~~~~v~~-l~~~~l~~p~~~v~v~~~ 392 (474)
++++ ..+ +..|+..++ .++|+++|||| .|..+.. +...++. +.+...
T Consensus 207 ~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-----i~v~~~ 281 (1104)
T 4ddu_A 207 AVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-----FTVGRL 281 (1104)
T ss_dssp HHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-----CCCCBC
T ss_pred ccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-----EEeccC
Confidence 7663 224 788888877 88999999999 5665543 3333332 333333
Q ss_pred cccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc----chHHHHH
Q 011963 393 VASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS----TGSNCIV 468 (474)
Q Consensus 393 ~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~----~~r~~~i 468 (474)
.....++.|.++.++ +...|..+|..+ ++++||||+|+..|+.++..|...|+++. .+|.. +
T Consensus 282 -~~~~~~i~~~~~~~~----k~~~L~~ll~~~--------~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~rr~-l 347 (1104)
T 4ddu_A 282 -VSVARNITHVRISSR----SKEKLVELLEIF--------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKN-F 347 (1104)
T ss_dssp -CCCCCCEEEEEESCC----CHHHHHHHHHHH--------CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSHHHH-H
T ss_pred -CCCcCCceeEEEecC----HHHHHHHHHHhc--------CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCcHHH-H
Confidence 456678999988773 555556666663 67999999999999999999999999885 34555 9
Q ss_pred HHhhc
Q 011963 469 SHIKN 473 (474)
Q Consensus 469 ~~Fk~ 473 (474)
++|++
T Consensus 348 ~~F~~ 352 (1104)
T 4ddu_A 348 EDFKV 352 (1104)
T ss_dssp HHHHH
T ss_pred HHHHC
Confidence 99975
No 34
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-33 Score=320.85 Aligned_cols=242 Identities=9% Similarity=0.014 Sum_probs=186.6
Q ss_pred HHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEE
Q 011963 183 LNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (474)
Q Consensus 183 ~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil 262 (474)
++.+...+...++..|||+ |.++|+.++.|+|+|++|||| ||||++|++|++..+. .+.++||+
T Consensus 170 ~~~~~~~~~~~~~f~ltp~-----Q~~AI~~i~~g~dvLV~ApTG-SGKTlva~l~i~~~l~----------~g~rvlvl 233 (1108)
T 3l9o_A 170 AEHKRVNEARTYPFTLDPF-----QDTAISCIDRGESVLVSAHTS-AGKTVVAEYAIAQSLK----------NKQRVIYT 233 (1108)
T ss_dssp TTTCCCSCSSCCSSCCCHH-----HHHHHHHHTTTCCEEEECCSS-SHHHHHHHHHHHHHHH----------TTCEEEEE
T ss_pred ChhhhHHHHHhCCCCCCHH-----HHHHHHHHHcCCCEEEECCCC-CChHHHHHHHHHHHHh----------cCCeEEEE
Confidence 3333344555677778888 999999999999999999999 9999999999998873 36699999
Q ss_pred eccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccccc
Q 011963 263 VSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342 (474)
Q Consensus 263 ~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~l 342 (474)
+||++|+.|+++.+..+.. .++.++|+.+.. . +++|+|+|||+|+.++......+.++.+|||||||+|
T Consensus 234 ~PtraLa~Q~~~~l~~~~~---~VglltGd~~~~-------~-~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l 302 (1108)
T 3l9o_A 234 SPIKALSNQKYRELLAEFG---DVGLMTGDITIN-------P-DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYM 302 (1108)
T ss_dssp ESSHHHHHHHHHHHHHHTS---SEEEECSSCBCC-------C-SCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGT
T ss_pred cCcHHHHHHHHHHHHHHhC---CccEEeCccccC-------C-CCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhc
Confidence 9999999999999998732 577788987732 2 6899999999999999988888999999999999999
Q ss_pred CC---hhHHHHHHhhCCCCCcEEEEEccCCcc--HHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCc-------
Q 011963 343 SK---GDTLSLIRQSISGKPHTVVFNDCLTYT--SVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASD------- 410 (474)
Q Consensus 343 l~---~~~l~~Il~~l~~~~q~llfSAT~~~~--v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~------- 410 (474)
++ ...+..++..++..+|+++||||+|+. +..++..++..|...+..... +..+.++++.....
T Consensus 303 ~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r----p~pl~~~~~~~~~~~~~~~vd 378 (1108)
T 3l9o_A 303 RDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR----PTPLQHYLFPAHGDGIYLVVD 378 (1108)
T ss_dssp TSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC----SSCEEEEEEETTSSCCEEEEE
T ss_pred cccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC----cccceEEEeecCCcceeeeec
Confidence 98 778889999999999999999999986 446666677777633333221 22344444332210
Q ss_pred -hh----------------------------------------H---HHHHHHHHHHHhhccCCCCCCcEEEEEccchhH
Q 011963 411 -EE----------------------------------------K---ILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKF 446 (474)
Q Consensus 411 -~~----------------------------------------K---~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a 446 (474)
.. + ...+..++..+... . ..++||||+|+..|
T Consensus 379 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~-~---~~~vIVF~~sr~~~ 454 (1108)
T 3l9o_A 379 EKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-K---YNPVIVFSFSKRDC 454 (1108)
T ss_dssp TTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT-T---CCCEEEEESCHHHH
T ss_pred cccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc-C---CCCEEEEeCcHHHH
Confidence 00 0 23344455444433 3 57999999999999
Q ss_pred HHHHHHHhhCCCc
Q 011963 447 QNLVSTLKCKGYS 459 (474)
Q Consensus 447 ~~l~~~L~~~gi~ 459 (474)
+.++..|...|+.
T Consensus 455 e~la~~L~~~~~~ 467 (1108)
T 3l9o_A 455 EELALKMSKLDFN 467 (1108)
T ss_dssp HHHHHHTCSHHHH
T ss_pred HHHHHHHHhccCC
Confidence 9999999775554
No 35
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=6.6e-33 Score=303.25 Aligned_cols=240 Identities=11% Similarity=0.024 Sum_probs=182.4
Q ss_pred hCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHH
Q 011963 192 HDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAK 271 (474)
Q Consensus 192 ~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Q 271 (474)
.+|| .|||| |..+||.++.|+ |+.|+|| ||||+||+||++...+ .+++++||+||||||.|
T Consensus 79 ~lG~-~pt~V-----Q~~~ip~ll~G~--Iaea~TG-eGKTlaf~LP~~l~aL----------~g~~vlVltptreLA~q 139 (844)
T 1tf5_A 79 VTGM-FPFKV-----QLMGGVALHDGN--IAEMKTG-EGKTLTSTLPVYLNAL----------TGKGVHVVTVNEYLASR 139 (844)
T ss_dssp HHSC-CCCHH-----HHHHHHHHHTTS--EEECCTT-SCHHHHHHHHHHHHHT----------TSSCEEEEESSHHHHHH
T ss_pred HcCC-CCcHH-----HHHhhHHHhCCC--EEEccCC-cHHHHHHHHHHHHHHH----------cCCCEEEEeCCHHHHHH
Confidence 4799 99999 999999999999 9999999 9999999999995432 26689999999999999
Q ss_pred HHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHH-HHHHHcC------CCCCCCcceEEeccccccC
Q 011963 272 VRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLK------AIDVSGVSLLVVDRLDSLS 343 (474)
Q Consensus 272 i~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL-~~ll~~~------~~~l~~l~~lViDEad~ll 343 (474)
++.++..+ ..+|+++++++||.+...+ .+.. +|||+||||||| .++|... .+.++.+.++||||||+||
T Consensus 140 d~e~~~~l~~~lgl~v~~i~gg~~~~~r--~~~~-~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mL 216 (844)
T 1tf5_A 140 DAEQMGKIFEFLGLTVGLNLNSMSKDEK--REAY-AADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSIL 216 (844)
T ss_dssp HHHHHHHHHHHTTCCEEECCTTSCHHHH--HHHH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHH
T ss_pred HHHHHHHHHhhcCCeEEEEeCCCCHHHH--HHhc-CCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhh
Confidence 99999998 6679999999999986543 3444 689999999999 6665542 4678999999999999998
Q ss_pred -C------------------hhHHHHHHhhCC---------CCCcEE-----------------EEEccCCcc---HHHH
Q 011963 344 -K------------------GDTLSLIRQSIS---------GKPHTV-----------------VFNDCLTYT---SVPA 375 (474)
Q Consensus 344 -~------------------~~~l~~Il~~l~---------~~~q~l-----------------lfSAT~~~~---v~~l 375 (474)
| ..++..|+..++ +.+|++ +||||++.. +...
T Consensus 217 iDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~a 296 (844)
T 1tf5_A 217 IDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQA 296 (844)
T ss_dssp TTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHH
T ss_pred hhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHH
Confidence 5 257888999997 478888 999998753 3333
Q ss_pred --HHHhhc-CCceEEE-------c-----------------------------cCCcccccCCcE---------------
Q 011963 376 --VQNLLL-GSINRLS-------L-----------------------------NQSVASQSACII--------------- 401 (474)
Q Consensus 376 --~~~~l~-~p~~~v~-------v-----------------------------~~~~~~~~~~i~--------------- 401 (474)
+..+|. ++. +|. + ... ..+..+|.
T Consensus 297 l~A~~l~~~d~d-Yiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e-~~t~a~It~q~~fr~y~kl~GmT 374 (844)
T 1tf5_A 297 LKAHVAMQKDVD-YVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNE-SMTLATITFQNYFRMYEKLAGMT 374 (844)
T ss_dssp HHHHHTCCBTTT-EEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCC-EEEEEEEEHHHHHTTSSEEEEEE
T ss_pred HHHHHHhhcCCc-eEEecCeeEEeecccccccCCCccchhhHHHHhhcccceeccc-ccccceeeHHHHHHHHhhhccCC
Confidence 223332 221 221 1 000 11111111
Q ss_pred --------------------------------EEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHH
Q 011963 402 --------------------------------QSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNL 449 (474)
Q Consensus 402 --------------------------------q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l 449 (474)
+.++++. ..+|+..|...|...... +.++||||+|+..++.|
T Consensus 375 GTa~te~~e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~-~~~K~~al~~~i~~~~~~-----~~pvLVft~s~~~se~L 448 (844)
T 1tf5_A 375 GTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRT-MEGKFKAVAEDVAQRYMT-----GQPVLVGTVAVETSELI 448 (844)
T ss_dssp SCCGGGHHHHHHHHCCCEEECCCSSCCCCEECCCEEESS-HHHHHHHHHHHHHHHHHH-----TCCEEEEESCHHHHHHH
T ss_pred cccchhHHHHHHHhCCceEEecCCCCcccccCCcEEEeC-HHHHHHHHHHHHHHHHhc-----CCcEEEEECCHHHHHHH
Confidence 1144453 567887777766654333 56899999999999999
Q ss_pred HHHHhhCCCccc
Q 011963 450 VSTLKCKGYSIS 461 (474)
Q Consensus 450 ~~~L~~~gi~v~ 461 (474)
+..|...||++.
T Consensus 449 s~~L~~~gi~~~ 460 (844)
T 1tf5_A 449 SKLLKNKGIPHQ 460 (844)
T ss_dssp HHHHHTTTCCCE
T ss_pred HHHHHHCCCCEE
Confidence 999999999986
No 36
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=3.2e-33 Score=320.24 Aligned_cols=250 Identities=11% Similarity=0.094 Sum_probs=200.7
Q ss_pred HHHHHHHHh-CCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEE
Q 011963 184 NAIENAMRH-DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL 262 (474)
Q Consensus 184 ~~i~~~l~~-~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil 262 (474)
+.+.+.+.+ +||. | |+ |.++||.++.|+|++++|||| ||||+ |++|++..+.. .++++|||
T Consensus 44 ~~~~~~~~~~~g~~-p-~i-----Q~~ai~~il~g~dvlv~apTG-SGKTl-~~lp~l~~~~~---------~~~~~lil 105 (1054)
T 1gku_B 44 KEFVEFFRKCVGEP-R-AI-----QKMWAKRILRKESFAATAPTG-VGKTS-FGLAMSLFLAL---------KGKRCYVI 105 (1054)
T ss_dssp HHHHHHHHTTTCSC-C-HH-----HHHHHHHHHTTCCEECCCCBT-SCSHH-HHHHHHHHHHT---------TSCCEEEE
T ss_pred HHHHHHHHHhcCCC-H-HH-----HHHHHHHHHhCCCEEEEcCCC-CCHHH-HHHHHHHHHhh---------cCCeEEEE
Confidence 334444444 7999 9 99 999999999999999999999 99998 99999988765 37799999
Q ss_pred eccHHHHHHHHHHHHhc-ccCCc----EEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceE
Q 011963 263 VSSQEKAAKVRSVCKPL-KAFGI----HTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLL 334 (474)
Q Consensus 263 ~PtreLa~Qi~~~~~~l-~~~~i----~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~l 334 (474)
+|||+||.|+++.+..+ ...++ +++.++||.+...+ ...+.. ++|+|+|||+|++++.. |+++++|
T Consensus 106 ~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~----L~~l~~l 179 (1054)
T 1gku_B 106 FPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRE----LGHFDFI 179 (1054)
T ss_dssp ESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTT----SCCCSEE
T ss_pred eccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHH----hccCCEE
Confidence 99999999999999998 45588 89999999987764 444444 89999999999998765 6799999
Q ss_pred EeccccccCC-hhHHHHHHhhC-----------CCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEE
Q 011963 335 VVDRLDSLSK-GDTLSLIRQSI-----------SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQ 402 (474)
Q Consensus 335 ViDEad~ll~-~~~l~~Il~~l-----------~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q 402 (474)
||||||+|++ ...+..++..+ +..+|+++||||++.. ..++..++.++. .+.+... .....++.|
T Consensus 180 ViDEah~~l~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~-~i~v~~~-~~~~~~i~~ 256 (1054)
T 1gku_B 180 FVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLL-NFDIGSS-RITVRNVED 256 (1054)
T ss_dssp EESCHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHH-CCCCSCC-EECCCCEEE
T ss_pred EEeChhhhhhccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcce-EEEccCc-ccCcCCceE
Confidence 9999999999 78888888777 3578999999999998 666666666665 4555443 445567888
Q ss_pred EEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc---chHHHHHHHhhc
Q 011963 403 SVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS---TGSNCIVSHIKN 473 (474)
Q Consensus 403 ~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~---~~r~~~i~~Fk~ 473 (474)
.++. .++...|..+| ... ..++||||+|+..|+.++..|+.. +++. .+++.++++|++
T Consensus 257 ~~~~----~~k~~~L~~ll----~~~----~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~~~l~~F~~ 317 (1054)
T 1gku_B 257 VAVN----DESISTLSSIL----EKL----GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKKGDYEKFVE 317 (1054)
T ss_dssp EEES----CCCTTTTHHHH----TTS----CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSSHHHHHHHH
T ss_pred EEec----hhHHHHHHHHH----hhc----CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHHHHHHHHHc
Confidence 7772 33553333444 332 468999999999999999999988 7765 456688888874
No 37
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.98 E-value=3.2e-31 Score=283.17 Aligned_cols=254 Identities=14% Similarity=0.131 Sum_probs=193.1
Q ss_pred hHHHHHHHHHh-CCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEE
Q 011963 182 CLNAIENAMRH-DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLL 260 (474)
Q Consensus 182 l~~~i~~~l~~-~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~al 260 (474)
+++.+.+.|++ .||..|+|+ |.++|+.++.|+|++++|||| ||||+||++|++. ....+|
T Consensus 9 L~~~~~~~l~~~~g~~~~r~~-----Q~~~i~~il~g~d~lv~apTG-sGKTl~~~lp~l~-------------~~g~~l 69 (523)
T 1oyw_A 9 LESGAKQVLQETFGYQQFRPG-----QEEIIDTVLSGRDCLVVMPTG-GGKSLCYQIPALL-------------LNGLTV 69 (523)
T ss_dssp HHHHHHHHHHHTTCCSSCCTT-----HHHHHHHHHTTCCEEEECSCH-HHHHHHHHHHHHH-------------SSSEEE
T ss_pred CCHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHcCCCEEEECCCC-cHHHHHHHHHHHH-------------hCCCEE
Confidence 78889999998 799999999 999999999999999999999 9999999999983 134799
Q ss_pred EEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEec
Q 011963 261 FLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVD 337 (474)
Q Consensus 261 il~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViD 337 (474)
||+|+++|+.|+.+.+..+ |+.+..++|+.+..... ..+..+.++|+|+||++|........+...++.+||||
T Consensus 70 vi~P~~aL~~q~~~~l~~~---gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViD 146 (523)
T 1oyw_A 70 VVSPLISLMKDQVDQLQAN---GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVD 146 (523)
T ss_dssp EECSCHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEES
T ss_pred EECChHHHHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEe
Confidence 9999999999998888775 78899999988765543 34445579999999999963211122344788999999
Q ss_pred cccccCC-----hhH---HHHHHhhCCCCCcEEEEEccCCccHHHHHHHhh--cCCceEEEccCCcccccCCcEEEEEEc
Q 011963 338 RLDSLSK-----GDT---LSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLL--LGSINRLSLNQSVASQSACIIQSVNVC 407 (474)
Q Consensus 338 Ead~ll~-----~~~---l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l--~~p~~~v~v~~~~~~~~~~i~q~~~~~ 407 (474)
|||++.+ ... +..++..+| +.|+++||||+++.+...+..++ .+|. +.+.. ...+++...+...
T Consensus 147 EaH~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~--~~~~~---~~r~~l~~~v~~~ 220 (523)
T 1oyw_A 147 EAHCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPL--IQISS---FDRPNIRYMLMEK 220 (523)
T ss_dssp SGGGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCE--EEECC---CCCTTEEEEEEEC
T ss_pred CccccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCe--EEeCC---CCCCceEEEEEeC
Confidence 9999986 233 334555554 58999999999998766555544 3443 33332 1234454443322
Q ss_pred CCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 408 ASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 408 ~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
..+...+..+ +..+. +.++||||+|++.|+.++..|...|+.+. .+|..++++|++
T Consensus 221 ---~~~~~~l~~~----l~~~~---~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~ 284 (523)
T 1oyw_A 221 ---FKPLDQLMRY----VQEQR---GKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQR 284 (523)
T ss_dssp ---SSHHHHHHHH----HHHTT---TCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred ---CCHHHHHHHH----HHhcC---CCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHc
Confidence 3466444444 34444 67999999999999999999999999876 568889999975
No 38
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.98 E-value=2.6e-32 Score=297.89 Aligned_cols=143 Identities=10% Similarity=0.060 Sum_probs=113.5
Q ss_pred CCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHH
Q 011963 193 DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (474)
Q Consensus 193 ~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi 272 (474)
+|. .|||| |..++|.++.|+ |+.|+|| ||||++|+||++.... .+++++||+|||+||.|+
T Consensus 71 lg~-~p~~V-----Q~~~i~~ll~G~--Iaem~TG-sGKTlaf~LP~l~~~l----------~g~~vlVltPTreLA~Q~ 131 (853)
T 2fsf_A 71 FGM-RHFDV-----QLLGGMVLNERC--IAEMRTG-EGKTLTATLPAYLNAL----------TGKGVHVVTVNDYLAQRD 131 (853)
T ss_dssp HSC-CCCHH-----HHHHHHHHHSSE--EEECCTT-SCHHHHHHHHHHHHHT----------TSSCCEEEESSHHHHHHH
T ss_pred cCC-CCChH-----HHhhcccccCCe--eeeecCC-chHHHHHHHHHHHHHH----------cCCcEEEEcCCHHHHHHH
Confidence 364 89999 999999999999 9999999 9999999999996543 266899999999999999
Q ss_pred HHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHH-HHHHHcC------CCCCCCcceEEeccccccC-
Q 011963 273 RSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLK------AIDVSGVSLLVVDRLDSLS- 343 (474)
Q Consensus 273 ~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL-~~ll~~~------~~~l~~l~~lViDEad~ll- 343 (474)
+.++..+ ..+|+++++++||.+.. .+.+.. +|+|+||||||| .++|..+ .+.++++.++||||||+||
T Consensus 132 ~e~~~~l~~~lgl~v~~i~GG~~~~--~r~~~~-~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLi 208 (853)
T 2fsf_A 132 AENNRPLFEFLGLTVGINLPGMPAP--AKREAY-AADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILI 208 (853)
T ss_dssp HHHHHHHHHHTTCCEEECCTTCCHH--HHHHHH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTT
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCHH--HHHHhc-CCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHH
Confidence 9999998 66799999999999864 344555 699999999999 7888754 3678999999999999999
Q ss_pred C------------------hhHHHHHHhhCCC
Q 011963 344 K------------------GDTLSLIRQSISG 357 (474)
Q Consensus 344 ~------------------~~~l~~Il~~l~~ 357 (474)
+ ...+..|+..++.
T Consensus 209 D~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 209 DEARTPLIISGPAEDSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp TTTTCEEEEEEC--------------------
T ss_pred hcCcccccccCCCccchhHHHHHHHHHHhchh
Confidence 3 2567788888874
No 39
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=1.5e-31 Score=294.36 Aligned_cols=171 Identities=10% Similarity=0.097 Sum_probs=139.1
Q ss_pred HHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccH
Q 011963 187 ENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQ 266 (474)
Q Consensus 187 ~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Ptr 266 (474)
..+|..+||..|+|+ |.++|+.++.|+|+|+++||| ||||++|++|+++.+...... .+.++|||+||+
T Consensus 3 ~~~l~~~g~~~lr~~-----Q~~~i~~~l~g~~~iv~~~TG-sGKTl~~~~~i~~~l~~~~~~-----~~~~~lvl~Pt~ 71 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNY-----QLELALPAMKGKNTIICAPTG-CGKTFVSLLICEHHLKKFPQG-----QKGKVVFFANQI 71 (696)
T ss_dssp ----CTTC--CCCHH-----HHHHHHHHHTTCCEEEECCTT-SSHHHHHHHHHHHHHHHSCTT-----CCCCEEEECSSH
T ss_pred CCcccccCCCCccHH-----HHHHHHHHHcCCCEEEEcCCC-chHHHHHHHHHHHHHHhCccC-----CCCeEEEEECCH
Confidence 456778999999988 999999999999999999999 999999999999888764211 346899999999
Q ss_pred HHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCC-CCCCcceEEeccccccCC
Q 011963 267 EKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI-DVSGVSLLVVDRLDSLSK 344 (474)
Q Consensus 267 eLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~-~l~~l~~lViDEad~ll~ 344 (474)
+|+.|+.+++..+ ...++++..++||.....+...+.. +++|+|+|||+|++++..+.+ .+.++.+|||||||++.+
T Consensus 72 ~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~ 150 (696)
T 2ykg_A 72 PVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVE-NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSK 150 (696)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHH-TCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCST
T ss_pred HHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhcc-CCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccC
Confidence 9999999999998 4458999999999876666666666 799999999999999998776 799999999999999987
Q ss_pred hhHHHH----HHhh-----CCCCCcEEEEEccCC
Q 011963 345 GDTLSL----IRQS-----ISGKPHTVVFNDCLT 369 (474)
Q Consensus 345 ~~~l~~----Il~~-----l~~~~q~llfSAT~~ 369 (474)
...+.. .+.. .+..+|++++|||+.
T Consensus 151 ~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 151 QHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp TCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred cccHHHHHHHHHHHhhcccCCCCCeEEEEeCccc
Confidence 222222 2222 246789999999987
No 40
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.97 E-value=3e-30 Score=274.95 Aligned_cols=160 Identities=11% Similarity=0.115 Sum_probs=134.1
Q ss_pred chhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccC
Q 011963 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAF 282 (474)
Q Consensus 204 ~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~ 282 (474)
++||.++|+.++.|+|++++|||| ||||++|++|+++.+..... ..++++|||+||++|+.|+++.+..+ ...
T Consensus 6 ~~~Q~~~i~~~~~~~~~l~~~~tG-sGKT~~~~~~~~~~~~~~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 6 RNYQLELALPAKKGKNTIICAPTG-CGKTFVSLLICEHHLKKFPC-----GQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCTT-SCHHHHHHHHHHHHHHTCCS-----SCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHhCCCCEEEEeCCC-ChHHHHHHHHHHHHHHhccc-----CCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 345999999999999999999999 99999999999988876431 13778999999999999999999998 455
Q ss_pred CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCC-CCCCcceEEeccccccCChhHHHH----HHhhC--
Q 011963 283 GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI-DVSGVSLLVVDRLDSLSKGDTLSL----IRQSI-- 355 (474)
Q Consensus 283 ~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~-~l~~l~~lViDEad~ll~~~~l~~----Il~~l-- 355 (474)
++++..++|+.....+...+.. +++|+|+||++|.+++..+.+ .+.++.+|||||||++.+...+.. ++...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIE-DNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG 158 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHH-HCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCcchhhHHHHhc-CCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc
Confidence 9999999999987766666666 799999999999999998777 799999999999999998111222 22221
Q ss_pred ---CCCCcEEEEEccCCc
Q 011963 356 ---SGKPHTVVFNDCLTY 370 (474)
Q Consensus 356 ---~~~~q~llfSAT~~~ 370 (474)
...+|+++||||++.
T Consensus 159 ~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp SCCSCCCEEEEEESCCCC
T ss_pred cccCCCCeEEEEecCccc
Confidence 256899999999965
No 41
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.97 E-value=1.1e-30 Score=279.05 Aligned_cols=166 Identities=11% Similarity=0.121 Sum_probs=130.8
Q ss_pred CCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHH
Q 011963 193 DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (474)
Q Consensus 193 ~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi 272 (474)
++...|+|+ |.++|+.++.|+|++++|||| ||||++|++|+++.+..... ..++++|||+||++|+.|+
T Consensus 3 ~~~~~~~~~-----Q~~~i~~~~~~~~~l~~~~tG-sGKT~~~~~~~~~~~~~~~~-----~~~~~~lil~P~~~L~~q~ 71 (556)
T 4a2p_A 3 METKKARSY-----QIELAQPAINGKNALICAPTG-SGKTFVSILICEHHFQNMPA-----GRKAKVVFLATKVPVYEQQ 71 (556)
T ss_dssp -----CCHH-----HHHHHHHHHTTCCEEEECCTT-SCHHHHHHHHHHHHHHTCCS-----SCCCCEEEECSSHHHHHHH
T ss_pred CCCCCCCHH-----HHHHHHHHHcCCCEEEEcCCC-ChHHHHHHHHHHHHHHhCcc-----cCCCeEEEEeCCHHHHHHH
Confidence 455567777 999999999999999999999 99999999999988876421 1377999999999999999
Q ss_pred HHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCC-CCCCcceEEeccccccCChhHHHH
Q 011963 273 RSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI-DVSGVSLLVVDRLDSLSKGDTLSL 350 (474)
Q Consensus 273 ~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~-~l~~l~~lViDEad~ll~~~~l~~ 350 (474)
++.+..+ ...++++..++|+.+...+...+.. +++|+|+||++|.+++..+.+ .+.++++|||||||++.+...+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~ 150 (556)
T 4a2p_A 72 KNVFKHHFERQGYSVQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNV 150 (556)
T ss_dssp HHHHHHHHGGGTCCEEECCCC-----CHHHHHH-HCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHH
T ss_pred HHHHHHHhcccCceEEEEeCCCCcchhHHHhhC-CCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHH
Confidence 9999998 4459999999999987777777776 799999999999999998877 899999999999999998111222
Q ss_pred H----Hhh-C---CCCCcEEEEEccCCc
Q 011963 351 I----RQS-I---SGKPHTVVFNDCLTY 370 (474)
Q Consensus 351 I----l~~-l---~~~~q~llfSAT~~~ 370 (474)
+ +.. + .+.+|+++||||++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~l~lSAT~~~ 178 (556)
T 4a2p_A 151 LMTRYLEQKFNSASQLPQILGLTASVGV 178 (556)
T ss_dssp HHHHHHHHHHCC---CCEEEEEESCCCC
T ss_pred HHHHHHHhhhcccCCCCeEEEEeCCccc
Confidence 2 221 1 356899999999954
No 42
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.97 E-value=4.3e-31 Score=288.71 Aligned_cols=241 Identities=9% Similarity=0.072 Sum_probs=183.6
Q ss_pred CCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHH
Q 011963 193 DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (474)
Q Consensus 193 ~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi 272 (474)
+|+ .|||| |..+||.++.|+ |+.|+|| +|||++|.||++...+. +.+++||+||++||.|+
T Consensus 108 lG~-rP~~V-----Q~~~ip~Ll~G~--Iaem~TG-eGKTLa~~LP~~l~aL~----------g~~v~VvTpTreLA~Qd 168 (922)
T 1nkt_A 108 LDQ-RPFDV-----QVMGAAALHLGN--VAEMKTG-EGKTLTCVLPAYLNALA----------GNGVHIVTVNDYLAKRD 168 (922)
T ss_dssp HSC-CCCHH-----HHHHHHHHHTTE--EEECCTT-SCHHHHTHHHHHHHHTT----------TSCEEEEESSHHHHHHH
T ss_pred cCC-CCCHH-----HHHHHHhHhcCC--EEEecCC-CccHHHHHHHHHHHHHh----------CCCeEEEeCCHHHHHHH
Confidence 598 99999 999999999999 9999999 99999999999855432 55899999999999999
Q ss_pred HHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHH-HHHHHcC------CCCCCCcceEEeccccccC-
Q 011963 273 RSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLK------AIDVSGVSLLVVDRLDSLS- 343 (474)
Q Consensus 273 ~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL-~~ll~~~------~~~l~~l~~lViDEad~ll- 343 (474)
+.++..+ ..+|+++++++||.+... +.+.. +|||+|||||+| .++|..+ .+.++.+.++||||||+||
T Consensus 169 ae~m~~l~~~lGLsv~~i~gg~~~~~--r~~~y-~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLi 245 (922)
T 1nkt_A 169 SEWMGRVHRFLGLQVGVILATMTPDE--RRVAY-NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILI 245 (922)
T ss_dssp HHHHHHHHHHTTCCEEECCTTCCHHH--HHHHH-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHT
T ss_pred HHHHHHHHhhcCCeEEEEeCCCCHHH--HHHhc-CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHH
Confidence 9999998 667999999999998643 34444 689999999999 7887654 4678899999999999998
Q ss_pred C------------------hhHHHHHHhhCC---------CCCcEE-----------------EEEccCCcc---HHHH-
Q 011963 344 K------------------GDTLSLIRQSIS---------GKPHTV-----------------VFNDCLTYT---SVPA- 375 (474)
Q Consensus 344 ~------------------~~~l~~Il~~l~---------~~~q~l-----------------lfSAT~~~~---v~~l- 375 (474)
| ...+..|+..++ +.+|++ +||||++.. +...
T Consensus 246 DeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL 325 (922)
T 1nkt_A 246 DEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNAL 325 (922)
T ss_dssp TGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHH
T ss_pred hcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHH
Confidence 3 368889999998 788999 999999863 3322
Q ss_pred -HHHhhcCCceEE-------EccC----------------------------CcccccCCcEE-----------------
Q 011963 376 -VQNLLLGSINRL-------SLNQ----------------------------SVASQSACIIQ----------------- 402 (474)
Q Consensus 376 -~~~~l~~p~~~v-------~v~~----------------------------~~~~~~~~i~q----------------- 402 (474)
+..++.....+| .++. ..+.+..+|.+
T Consensus 326 ~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa 405 (922)
T 1nkt_A 326 KAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTA 405 (922)
T ss_dssp HHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCC
T ss_pred HHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCc
Confidence 222332111011 1111 00112222221
Q ss_pred ------------------------------EEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHH
Q 011963 403 ------------------------------SVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVST 452 (474)
Q Consensus 403 ------------------------------~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~ 452 (474)
.+++++ ...|+..+...+...... +.++||||+|++.++.|+..
T Consensus 406 ~te~~Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t-~~~K~~al~~~i~~~~~~-----gqpvLVft~Sie~sE~Ls~~ 479 (922)
T 1nkt_A 406 QTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKT-EEAKYIAVVDDVAERYAK-----GQPVLIGTTSVERSEYLSRQ 479 (922)
T ss_dssp GGGHHHHHHHHCCEEEECCCSSCCCCEECCCEEESC-HHHHHHHHHHHHHHHHHT-----TCCEEEEESCHHHHHHHHHH
T ss_pred hhHHHHHHHHhCCCeEEeCCCCCcccccCCcEEEeC-HHHHHHHHHHHHHHHHhc-----CCcEEEEECCHHHHHHHHHH
Confidence 134554 567887666666554322 56999999999999999999
Q ss_pred HhhCCCccc
Q 011963 453 LKCKGYSIS 461 (474)
Q Consensus 453 L~~~gi~v~ 461 (474)
|...||++.
T Consensus 480 L~~~Gi~~~ 488 (922)
T 1nkt_A 480 FTKRRIPHN 488 (922)
T ss_dssp HHHTTCCCE
T ss_pred HHHCCCCEE
Confidence 999999987
No 43
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.97 E-value=3.9e-30 Score=284.02 Aligned_cols=240 Identities=15% Similarity=0.130 Sum_probs=182.1
Q ss_pred HhhhHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcE
Q 011963 179 LILCLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPF 258 (474)
Q Consensus 179 ~~~l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ 258 (474)
..||++.+.++|+..||..|+|+ |.++|+.+++|++++++|||| ||||++|.+|++..+.. +.+
T Consensus 7 ~~~l~~~~~~~l~~~g~~~l~~~-----Q~~~i~~i~~~~~~lv~apTG-sGKT~~~~l~il~~~~~----------~~~ 70 (702)
T 2p6r_A 7 AESISSYAVGILKEEGIEELFPP-----QAEAVEKVFSGKNLLLAMPTA-AGKTLLAEMAMVREAIK----------GGK 70 (702)
T ss_dssp HHHHHHHHHHHHHCC---CCCCC-----CHHHHHHHTTCSCEEEECSSH-HHHHHHHHHHHHHHHHT----------TCC
T ss_pred hhccCHHHHHHHHhCCCCCCCHH-----HHHHHHHHhCCCcEEEEcCCc-cHHHHHHHHHHHHHHHh----------CCc
Confidence 34589999999999999999999 999999999999999999999 99999999999988753 458
Q ss_pred EEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecc
Q 011963 259 LLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDR 338 (474)
Q Consensus 259 alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDE 338 (474)
+||++|+|+||.|+++.++.+...|+++..++|+...... .+ . +++|+|+|||+|..++......++++++|||||
T Consensus 71 ~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~--~~-~-~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE 146 (702)
T 2p6r_A 71 SLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE--HL-G-DCDIIVTTSEKADSLIRNRASWIKAVSCLVVDE 146 (702)
T ss_dssp EEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS--CS-T-TCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETT
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh--hc-c-CCCEEEECHHHHHHHHHcChhHHhhcCEEEEee
Confidence 9999999999999999998777779999999998765432 11 2 689999999999999988766689999999999
Q ss_pred ccccCC---hhHHHHHHhhC---CCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEE------E
Q 011963 339 LDSLSK---GDTLSLIRQSI---SGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVN------V 406 (474)
Q Consensus 339 ad~ll~---~~~l~~Il~~l---~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~------~ 406 (474)
||++.+ ...+..++..+ .++.|++++|||+++ ...++.+ ++.+. +..... +..+...+. +
T Consensus 147 ~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~-l~~~~--~~~~~r----~~~l~~~~~~~~~~~~ 218 (702)
T 2p6r_A 147 IHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEW-LDADY--YVSDWR----PVPLVEGVLCEGTLEL 218 (702)
T ss_dssp GGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHH-TTCEE--EECCCC----SSCEEEEEECSSEEEE
T ss_pred eeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHH-hCCCc--ccCCCC----CccceEEEeeCCeeec
Confidence 999987 55566665554 578999999999997 5666654 44332 222211 011222221 1
Q ss_pred cCCch------hHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhh
Q 011963 407 CASDE------EKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKC 455 (474)
Q Consensus 407 ~~~~~------~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~ 455 (474)
..... ... .++...+.. .+++||||+|+..|+.++..|..
T Consensus 219 ~~~~~~~~~~~~~~----~~~~~~~~~-----~~~~LVF~~s~~~~~~~a~~L~~ 264 (702)
T 2p6r_A 219 FDGAFSTSRRVKFE----ELVEECVAE-----NGGVLVFESTRRGAEKTAVKLSA 264 (702)
T ss_dssp EETTEEEEEECCHH----HHHHHHHHT-----TCCEEEECSSHHHHHHHHHHHHH
T ss_pred cCcchhhhhhhhHH----HHHHHHHhc-----CCCEEEEcCCHHHHHHHHHHHHH
Confidence 11000 033 444444433 57999999999999999999875
No 44
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.97 E-value=1.8e-30 Score=287.43 Aligned_cols=238 Identities=14% Similarity=0.145 Sum_probs=186.6
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHH-HhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKC-YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLL 260 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~-~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~al 260 (474)
+++.+.++|...||..|+|+ |.++|+. ++.|++++++|||| ||||++|.+|+++.+... +.++|
T Consensus 8 l~~~~~~~l~~~g~~~l~~~-----Q~~~i~~~~~~~~~~lv~apTG-sGKT~~~~l~il~~~~~~---------~~~~l 72 (720)
T 2zj8_A 8 VDERIKSTLKERGIESFYPP-----QAEALKSGILEGKNALISIPTA-SGKTLIAEIAMVHRILTQ---------GGKAV 72 (720)
T ss_dssp SCHHHHHHHHHTTCCBCCHH-----HHHHHTTTGGGTCEEEEECCGG-GCHHHHHHHHHHHHHHHH---------CSEEE
T ss_pred CCHHHHHHHHHCCCCCCCHH-----HHHHHHHHhcCCCcEEEEcCCc-cHHHHHHHHHHHHHHHhC---------CCEEE
Confidence 78889999999999999998 9999998 89999999999999 999999999999888752 56999
Q ss_pred EEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 261 FLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 261 il~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
|++|+++||.|+++.+..+...|++++.++|+...... .+ . .++|+|+|||+|..++......++++++|||||||
T Consensus 73 ~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~--~~-~-~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 148 (720)
T 2zj8_A 73 YIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDE--WL-G-KYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIH 148 (720)
T ss_dssp EECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCG--GG-G-GCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGG
T ss_pred EEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCcccc--cc-C-CCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCc
Confidence 99999999999999998787679999999998765432 12 2 58999999999999988876668999999999999
Q ss_pred ccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEE------EcCC--
Q 011963 341 SLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVN------VCAS-- 409 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~------~~~~-- 409 (474)
++.+ ...+..++..++.+.|++++|||+++ ...++.++ ..+. +..... +..+...+. +...
T Consensus 149 ~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l-~~~~--~~~~~r----p~~l~~~~~~~~~~~~~~~~~ 220 (720)
T 2zj8_A 149 LIGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWL-NAEL--IVSDWR----PVKLRRGVFYQGFVTWEDGSI 220 (720)
T ss_dssp GGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHT-TEEE--EECCCC----SSEEEEEEEETTEEEETTSCE
T ss_pred ccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHh-CCcc--cCCCCC----CCcceEEEEeCCeeeccccch
Confidence 9987 77788888888778999999999987 56665544 3221 221111 011222221 1211
Q ss_pred --chhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhh
Q 011963 410 --DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKC 455 (474)
Q Consensus 410 --~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~ 455 (474)
...+. .++...+.. .+++||||+|++.|+.++..|..
T Consensus 221 ~~~~~~~----~~~~~~~~~-----~~~~LVF~~sr~~~~~~a~~L~~ 259 (720)
T 2zj8_A 221 DRFSSWE----ELVYDAIRK-----KKGALIFVNMRRKAERVALELSK 259 (720)
T ss_dssp EECSSTT----HHHHHHHHT-----TCCEEEECSCHHHHHHHHHHHHH
T ss_pred hhhhHHH----HHHHHHHhC-----CCCEEEEecCHHHHHHHHHHHHH
Confidence 12233 344444433 57999999999999999999975
No 45
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.97 E-value=3.5e-29 Score=280.13 Aligned_cols=167 Identities=11% Similarity=0.114 Sum_probs=134.0
Q ss_pred hCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHH
Q 011963 192 HDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAK 271 (474)
Q Consensus 192 ~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Q 271 (474)
-+||..|+|+ |.++|+.++.|+|+|+++||| ||||++|++|++..+..... ..+.++|||+||++|+.|
T Consensus 243 ~~g~~~l~~~-----Q~~~i~~~l~~~~~ll~~~TG-sGKTl~~~~~i~~~l~~~~~-----~~~~~~Lvl~Pt~~L~~Q 311 (797)
T 4a2q_A 243 VYETKKARSY-----QIELAQPAINGKNALICAPTG-SGKTFVSILICEHHFQNMPA-----GRKAKVVFLATKVPVYEQ 311 (797)
T ss_dssp -----CCCHH-----HHHHHHHHHTTCCEEEECCTT-SCHHHHHHHHHHHHHHTCCS-----SCCCCEEEECSSHHHHHH
T ss_pred hcCCCCCCHH-----HHHHHHHHHhCCCEEEEeCCC-ChHHHHHHHHHHHHHHhccc-----cCCCeEEEEeCCHHHHHH
Confidence 3689999988 999999999999999999999 99999999999988876421 137799999999999999
Q ss_pred HHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCC-CCCCcceEEeccccccCChhHHH
Q 011963 272 VRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI-DVSGVSLLVVDRLDSLSKGDTLS 349 (474)
Q Consensus 272 i~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~-~l~~l~~lViDEad~ll~~~~l~ 349 (474)
+++.+..+ ...+++++.++|+.+...+...+.. +++|+|+||++|.+++..+.+ .+.++.+|||||||++.....+.
T Consensus 312 ~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~ 390 (797)
T 4a2q_A 312 QKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYN 390 (797)
T ss_dssp HHHHHHHHHGGGTCCEEEECCC-----CHHHHHH-TCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHH
T ss_pred HHHHHHHhcccCCceEEEEeCCcchhhhHHHhhC-CCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHH
Confidence 99999998 4459999999999987777777777 799999999999999998777 79999999999999999821233
Q ss_pred HHH----hh----CCCCCcEEEEEccCCc
Q 011963 350 LIR----QS----ISGKPHTVVFNDCLTY 370 (474)
Q Consensus 350 ~Il----~~----l~~~~q~llfSAT~~~ 370 (474)
.++ .. ....+|+++||||++.
T Consensus 391 ~i~~~~~~~~~~~~~~~~~~l~lSATp~~ 419 (797)
T 4a2q_A 391 VLMTRYLEQKFNSASQLPQILGLTASVGV 419 (797)
T ss_dssp HHHHHHHHHHHTTCCCCCEEEEEESCCCC
T ss_pred HHHHHHHHHhhccCCCCCeEEEEcCCccc
Confidence 332 22 1456899999999963
No 46
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.96 E-value=3.1e-29 Score=277.28 Aligned_cols=238 Identities=13% Similarity=0.108 Sum_probs=185.8
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHH-HhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKC-YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLL 260 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~-~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~al 260 (474)
|++.+.+.|...||..|+|+ |.++|+. +..|++++++|||| ||||++|.+|+++.+.. .+.++|
T Consensus 15 l~~~~~~~l~~~g~~~l~~~-----Q~~~i~~~~~~~~~~lv~apTG-sGKT~~~~l~il~~~~~---------~~~~il 79 (715)
T 2va8_A 15 LPSNVIEIIKKRGIKKLNPP-----QTEAVKKGLLEGNRLLLTSPTG-SGKTLIAEMGIISFLLK---------NGGKAI 79 (715)
T ss_dssp SCHHHHHHHHTTSCCBCCHH-----HHHHHHTTTTTTCCEEEECCTT-SCHHHHHHHHHHHHHHH---------SCSEEE
T ss_pred CCHHHHHHHHhCCCCCCCHH-----HHHHHHHHhcCCCcEEEEcCCC-CcHHHHHHHHHHHHHHH---------CCCeEE
Confidence 78899999999999999999 9999999 78899999999999 99999999999988764 256999
Q ss_pred EEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 261 FLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 261 il~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
|++|+|+||.|+++.++.+...|++++.++|+...... .+ . .++|+|+|||+|..++......++++++|||||||
T Consensus 80 ~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~--~~-~-~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 80 YVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA--WL-K-NYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp EECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG--GG-G-GCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh--hc-C-CCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 99999999999999997776679999999998765432 22 2 58999999999999988876668999999999999
Q ss_pred ccCC---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEE------------EE
Q 011963 341 SLSK---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQS------------VN 405 (474)
Q Consensus 341 ~ll~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~------------~~ 405 (474)
++.+ ...++.++..++ +.|++++|||+++ ...++.++ +.+. +..... . ..+... +.
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l-~~~~--~~~~~r---~-~~l~~~~~~~~~~~~~~~~~ 226 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWL-GAEP--VATNWR---P-VPLIEGVIYPERKKKEYNVI 226 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHH-TCEE--EECCCC---S-SCEEEEEEEECSSTTEEEEE
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHh-CCCc--cCCCCC---C-CCceEEEEecCCcccceeee
Confidence 9987 667777777776 7999999999987 56666544 4332 222111 0 012211 22
Q ss_pred EcCC-------chhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhC
Q 011963 406 VCAS-------DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK 456 (474)
Q Consensus 406 ~~~~-------~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~ 456 (474)
+.+. ..... .++...+.. ++++||||+|+..|+.++..|...
T Consensus 227 ~~~~~~~~~~~~~~~~----~~~~~~~~~-----~~~~LVF~~s~~~~~~~a~~L~~~ 275 (715)
T 2va8_A 227 FKDNTTKKVHGDDAII----AYTLDSLSK-----NGQVLVFRNSRKMAESTALKIANY 275 (715)
T ss_dssp ETTSCEEEEESSSHHH----HHHHHHHTT-----TCCEEEECSSHHHHHHHHHHHHHT
T ss_pred cCcchhhhcccchHHH----HHHHHHHhc-----CCCEEEEECCHHHHHHHHHHHHHH
Confidence 2211 12233 455554432 579999999999999999999864
No 47
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.2e-28 Score=277.05 Aligned_cols=237 Identities=8% Similarity=0.033 Sum_probs=180.4
Q ss_pred hCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHH
Q 011963 192 HDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAK 271 (474)
Q Consensus 192 ~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Q 271 (474)
..+|. |+|+ |.++|+.++.|++++++|||| ||||++|.+|++..+. .+.++||++||++|+.|
T Consensus 82 ~~~f~-L~~~-----Q~eai~~l~~g~~vLV~apTG-SGKTlva~lai~~~l~----------~g~rvL~l~PtkaLa~Q 144 (1010)
T 2xgj_A 82 TYPFT-LDPF-----QDTAISCIDRGESVLVSAHTS-AGKTVVAEYAIAQSLK----------NKQRVIYTSPIKALSNQ 144 (1010)
T ss_dssp CCSSC-CCHH-----HHHHHHHHHHTCEEEEECCTT-SCHHHHHHHHHHHHHH----------TTCEEEEEESSHHHHHH
T ss_pred hCCCC-CCHH-----HHHHHHHHHcCCCEEEECCCC-CChHHHHHHHHHHHhc----------cCCeEEEECChHHHHHH
Confidence 34665 7777 999999999999999999999 9999999999997763 26799999999999999
Q ss_pred HHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC---hhHH
Q 011963 272 VRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTL 348 (474)
Q Consensus 272 i~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~---~~~l 348 (474)
+++.+..+.. .++.++|+.... . .++|+|+||++|..++.+....+.++.+|||||||+|.+ ...+
T Consensus 145 ~~~~l~~~~~---~vglltGd~~~~-------~-~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~ 213 (1010)
T 2xgj_A 145 KYRELLAEFG---DVGLMTGDITIN-------P-DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVW 213 (1010)
T ss_dssp HHHHHHHHHS---CEEEECSSCEEC-------T-TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHH
T ss_pred HHHHHHHHhC---CEEEEeCCCccC-------C-CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHH
Confidence 9999988733 677889987643 2 689999999999999988888899999999999999998 6677
Q ss_pred HHHHhhCCCCCcEEEEEccCCccH--HHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCC--------chh------
Q 011963 349 SLIRQSISGKPHTVVFNDCLTYTS--VPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCAS--------DEE------ 412 (474)
Q Consensus 349 ~~Il~~l~~~~q~llfSAT~~~~v--~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~--------~~~------ 412 (474)
..++..++..+|+++||||+|+.. ..++....+.+. .+..... .+..+.++++..+. ...
T Consensus 214 e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~-~vi~~~~---rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (1010)
T 2xgj_A 214 EETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPC-HIVYTNF---RPTPLQHYLFPAHGDGIYLVVDEKSTFREEN 289 (1010)
T ss_dssp HHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCE-EEEEECC---CSSCEEEEEEETTSSCCEEEECTTCCBCHHH
T ss_pred HHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCe-EEEecCC---CcccceEEEEecCCcceeeeeccccccchHH
Confidence 888999999999999999999842 234444445565 3333321 12235555554220 000
Q ss_pred -----------------------------H--------HHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhh
Q 011963 413 -----------------------------K--------ILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKC 455 (474)
Q Consensus 413 -----------------------------K--------~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~ 455 (474)
| ...+..++..+... . ..++||||+|+..|+.++..|..
T Consensus 290 ~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~-~---~~~~IVF~~sr~~~e~la~~L~~ 365 (1010)
T 2xgj_A 290 FQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-K---YNPVIVFSFSKRDCEELALKMSK 365 (1010)
T ss_dssp HHHHHHTCC------------------------------CHHHHHHHHHHHH-T---CCSEEEEESSHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhc-C---CCCEEEEECCHHHHHHHHHHHHh
Confidence 1 12233344443332 2 46999999999999999999999
Q ss_pred CCCcccchH
Q 011963 456 KGYSISTGS 464 (474)
Q Consensus 456 ~gi~v~~~r 464 (474)
.|+....+.
T Consensus 366 ~~~~~~~e~ 374 (1010)
T 2xgj_A 366 LDFNSDDEK 374 (1010)
T ss_dssp SCCCCHHHH
T ss_pred CCCCChHHH
Confidence 888765433
No 48
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.96 E-value=1.8e-28 Score=290.72 Aligned_cols=250 Identities=14% Similarity=0.140 Sum_probs=186.1
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcC-CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA-KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLL 260 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~al 260 (474)
|.+...++|...+|..++|| |.++|+.++.+ .|++++|||| ||||++|.+|++..+... .+.++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpi-----Q~q~~~~l~~~~~nvlv~APTG-SGKTliaelail~~l~~~--------~~~kav 976 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPI-----QTQVFNTVYNSDDNVFVGAPTG-SGKTICAEFAILRMLLQS--------SEGRCV 976 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHH-----HHHHHHHHHSCCSCEEEECCTT-SCCHHHHHHHHHHHHHHC--------TTCCEE
T ss_pred ccCHHHHHHHHhcCCCCCHH-----HHHHHHHHhcCCCcEEEEeCCC-CCchHHHHHHHHHHHHhC--------CCCEEE
Confidence 66778888988999999999 99999999876 5899999999 999999999999998864 356899
Q ss_pred EEeccHHHHHHHHHHHHh-ccc-CCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcC--CCCCCCcceEEe
Q 011963 261 FLVSSQEKAAKVRSVCKP-LKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLK--AIDVSGVSLLVV 336 (474)
Q Consensus 261 il~PtreLa~Qi~~~~~~-l~~-~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~--~~~l~~l~~lVi 336 (474)
||+|||+||.|+++.+.. +.. +|++|+.++|+...+. ..+. +++|||+|||+|..++++. ...+++|++|||
T Consensus 977 yi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~--~~~~--~~~IiV~TPEkld~llr~~~~~~~l~~v~lvVi 1052 (1724)
T 4f92_B 977 YITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDL--KLLG--KGNIIISTPEKWDILSRRWKQRKNVQNINLFVV 1052 (1724)
T ss_dssp EECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHH--HHHH--HCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEE
T ss_pred EEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcch--hhcC--CCCEEEECHHHHHHHHhCcccccccceeeEEEe
Confidence 999999999999999876 544 5999999999876443 2233 4799999999998877653 234789999999
Q ss_pred ccccccCC--hhHHHH-------HHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEc
Q 011963 337 DRLDSLSK--GDTLSL-------IRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVC 407 (474)
Q Consensus 337 DEad~ll~--~~~l~~-------Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~ 407 (474)
||+|+|.+ ...++. +...++.++|+|+||||+++ ..+++.|+-..+.....+... ..+-.++.++...
T Consensus 1053 DE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~--~RPvpL~~~i~~~ 1129 (1724)
T 4f92_B 1053 DEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPN--VRPVPLELHIQGF 1129 (1724)
T ss_dssp CCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGG--GCSSCEEEEEEEE
T ss_pred echhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCC--CCCCCeEEEEEec
Confidence 99999987 333333 33445788999999999998 778888775554324444433 2223456655544
Q ss_pred CCch--hHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHh
Q 011963 408 ASDE--EKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLK 454 (474)
Q Consensus 408 ~~~~--~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~ 454 (474)
+... .++..+...+...+..+. ..+++||||+|+..|+.+|..|.
T Consensus 1130 ~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~lVF~~sR~~~~~~A~~L~ 1176 (1724)
T 4f92_B 1130 NISHTQTRLLSMAKPVYHAITKHS--PKKPVIVFVPSRKQTRLTAIDIL 1176 (1724)
T ss_dssp CCCSHHHHHHTTHHHHHHHHHHHC--SSSCEEEEESSHHHHHHHHHHHH
T ss_pred cCCCchhhhhhhcchHHHHHHHhc--CCCCeeeeCCCHHHHHHHHHHHH
Confidence 3222 122222222333333332 36799999999999999988774
No 49
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=7.6e-27 Score=242.80 Aligned_cols=166 Identities=11% Similarity=0.049 Sum_probs=137.3
Q ss_pred CccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHH
Q 011963 196 EQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSV 275 (474)
Q Consensus 196 ~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~ 275 (474)
..|+.++.++||.++++.++.+ ++++++||| +|||++|+++++..+.. .+.++|||+||++|+.|+.+.
T Consensus 3 ~~~~~~~l~~~Q~~~i~~~~~~-~~ll~~~tG-~GKT~~~~~~~~~~~~~---------~~~~~liv~P~~~L~~q~~~~ 71 (494)
T 1wp9_A 3 LRRDLIQPRIYQEVIYAKCKET-NCLIVLPTG-LGKTLIAMMIAEYRLTK---------YGGKVLMLAPTKPLVLQHAES 71 (494)
T ss_dssp BCHHHHCCCHHHHHHHHHGGGS-CEEEECCTT-SCHHHHHHHHHHHHHHH---------SCSCEEEECSSHHHHHHHHHH
T ss_pred cccCCCCccHHHHHHHHHHhhC-CEEEEcCCC-CCHHHHHHHHHHHHHhc---------CCCeEEEEECCHHHHHHHHHH
Confidence 3444555667799999999999 999999999 99999999999987762 366899999999999999999
Q ss_pred HHhccc-CCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC---hhHHHHH
Q 011963 276 CKPLKA-FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLI 351 (474)
Q Consensus 276 ~~~l~~-~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~---~~~l~~I 351 (474)
+..+.+ .+.++..++|+........... +++|+|+||++|...+....+.+.++.+|||||||++.+ ...+..+
T Consensus 72 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~--~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~ 149 (494)
T 1wp9_A 72 FRRLFNLPPEKIVALTGEKSPEERSKAWA--RAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIARE 149 (494)
T ss_dssp HHHHBCSCGGGEEEECSCSCHHHHHHHHH--HCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHHhCcchhheEEeeCCcchhhhhhhcc--CCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHH
Confidence 999843 3568999999988775544443 489999999999999988888899999999999999986 4445555
Q ss_pred HhhCCCCCcEEEEEccCCccHHH
Q 011963 352 RQSISGKPHTVVFNDCLTYTSVP 374 (474)
Q Consensus 352 l~~l~~~~q~llfSAT~~~~v~~ 374 (474)
+......++++++|||.......
T Consensus 150 ~~~~~~~~~~l~lTaTp~~~~~~ 172 (494)
T 1wp9_A 150 YKRQAKNPLVIGLTASPGSTPEK 172 (494)
T ss_dssp HHHHCSSCCEEEEESCSCSSHHH
T ss_pred HHhcCCCCeEEEEecCCCCCcHH
Confidence 55556789999999999865333
No 50
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.96 E-value=3.1e-28 Score=276.37 Aligned_cols=166 Identities=11% Similarity=0.117 Sum_probs=131.5
Q ss_pred hCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHH
Q 011963 192 HDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAK 271 (474)
Q Consensus 192 ~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Q 271 (474)
-.|+..|+|+ |.++|+.++.|+|+|+++||| ||||++|++|++..+..... ..+.++|||+||++|+.|
T Consensus 243 l~~~~~~r~~-----Q~~ai~~il~g~~~ll~a~TG-sGKTl~~~~~i~~~l~~~~~-----~~~~~vLvl~Pt~~L~~Q 311 (936)
T 4a2w_A 243 VYETKKARSY-----QIELAQPAINGKNALICAPTG-SGKTFVSILICEHHFQNMPA-----GRKAKVVFLATKVPVYEQ 311 (936)
T ss_dssp -----CCCHH-----HHHHHHHHHTTCCEEEECCTT-SCHHHHHHHHHHTTTTTCCS-----SCCCCEEEECSSHHHHHH
T ss_pred ccCCCCCCHH-----HHHHHHHHHcCCCEEEEeCCC-chHHHHHHHHHHHHHHhccc-----cCCCeEEEEeCCHHHHHH
Confidence 3578899988 999999999999999999999 99999999999977655321 136789999999999999
Q ss_pred HHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCC-CCCCcceEEeccccccCChhHHH
Q 011963 272 VRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI-DVSGVSLLVVDRLDSLSKGDTLS 349 (474)
Q Consensus 272 i~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~-~l~~l~~lViDEad~ll~~~~l~ 349 (474)
+++.+..+ ...+++++.++|+.+...+...+.. +++|+|+||++|.+++..+.+ .+.++++|||||||++.....+.
T Consensus 312 ~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~-~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~ 390 (936)
T 4a2w_A 312 QKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYN 390 (936)
T ss_dssp HHHHHHHHHHTTTCCEEEECCC-----CCHHHHH-HCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHH
T ss_pred HHHHHHHHhcccCceEEEEECCcchhhHHHHhcc-CCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHH
Confidence 99999998 4459999999999987776666666 799999999999999998777 78999999999999999821233
Q ss_pred HHH----hh----CCCCCcEEEEEccCC
Q 011963 350 LIR----QS----ISGKPHTVVFNDCLT 369 (474)
Q Consensus 350 ~Il----~~----l~~~~q~llfSAT~~ 369 (474)
.++ .. ....+|+++||||.+
T Consensus 391 ~i~~~~~~~~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 391 VLMTRYLEQKFNSASQLPQILGLTASVG 418 (936)
T ss_dssp HHHHHHHHHHHTTCSCCCEEEEEESCCC
T ss_pred HHHHHHHHHhhccCCCcCeEEEecCCcc
Confidence 332 22 145689999999995
No 51
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.96 E-value=7.9e-28 Score=273.68 Aligned_cols=156 Identities=10% Similarity=0.043 Sum_probs=135.0
Q ss_pred chhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCC
Q 011963 204 NSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFG 283 (474)
Q Consensus 204 ~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~ 283 (474)
++||.++|+.++.|+|++++|||| ||||++|++|++..+. .+.++||++||++|+.|+++.+..+.. +
T Consensus 41 ~~~Q~~aI~~il~g~~vlv~apTG-sGKTlv~~~~i~~~~~----------~g~~vlvl~PtraLa~Q~~~~l~~~~~-~ 108 (997)
T 4a4z_A 41 DTFQKEAVYHLEQGDSVFVAAHTS-AGKTVVAEYAIAMAHR----------NMTKTIYTSPIKALSNQKFRDFKETFD-D 108 (997)
T ss_dssp CHHHHHHHHHHHTTCEEEEECCTT-SCSHHHHHHHHHHHHH----------TTCEEEEEESCGGGHHHHHHHHHTTC---
T ss_pred CHHHHHHHHHHHcCCCEEEEECCC-CcHHHHHHHHHHHHHh----------cCCeEEEEeCCHHHHHHHHHHHHHHcC-C
Confidence 444999999999999999999999 9999999999886543 367999999999999999999988622 7
Q ss_pred cEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC---hhHHHHHHhhCCCCCc
Q 011963 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPH 360 (474)
Q Consensus 284 i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q 360 (474)
+++..++|+.... ..++|+|+|||+|..++......+.++.+|||||||++.+ ...+..++..++.++|
T Consensus 109 ~~v~~l~G~~~~~--------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~ 180 (997)
T 4a4z_A 109 VNIGLITGDVQIN--------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVK 180 (997)
T ss_dssp CCEEEECSSCEEC--------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCE
T ss_pred CeEEEEeCCCccC--------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCC
Confidence 8899999987633 2689999999999999988888899999999999999998 7778899999999999
Q ss_pred EEEEEccCCccHHHHHHHhh
Q 011963 361 TVVFNDCLTYTSVPAVQNLL 380 (474)
Q Consensus 361 ~llfSAT~~~~v~~l~~~~l 380 (474)
+++||||+|+. .+++.++.
T Consensus 181 iIlLSAT~~n~-~ef~~~l~ 199 (997)
T 4a4z_A 181 FILLSATVPNT-YEFANWIG 199 (997)
T ss_dssp EEEEECCCTTH-HHHHHHHH
T ss_pred EEEEcCCCCCh-HHHHHHHh
Confidence 99999999874 35666553
No 52
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.95 E-value=9.5e-28 Score=284.58 Aligned_cols=248 Identities=10% Similarity=0.119 Sum_probs=181.1
Q ss_pred CCCCccccCCCchhhHHHHHHHhc-CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcC-CCCCCcEEEEEeccHHHHH
Q 011963 193 DGVEQDNPLFVNSWGIEFWKCYSS-AKDILETSGSSSTIVQIAWIVATAADSIARKEKEG-FSFTGPFLLFLVSSQEKAA 270 (474)
Q Consensus 193 ~g~~~ptpi~~~~~Q~~~i~~~l~-g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~-~~~~~~~alil~PtreLa~ 270 (474)
.||.+++|| |.+++|.++. ++|+|++|||| ||||++|.+|++..|.......+ ....+.++|||+|+|+||.
T Consensus 75 ~g~~~ln~i-----Qs~~~~~al~~~~N~lv~APTG-sGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~ 148 (1724)
T 4f92_B 75 EGFKTLNRI-----QSKLYRAALETDENLLLCAPTG-AGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQ 148 (1724)
T ss_dssp TTCSBCCHH-----HHHTHHHHHTCCCCEEEECCTT-SCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHH
T ss_pred CCCCCCCHH-----HHHHHHHHHcCCCcEEEEeCCc-chHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHH
Confidence 389999999 9999999875 67999999999 99999999999999987543211 1235789999999999999
Q ss_pred HHHHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCC--CCCCcceEEeccccccCC--h
Q 011963 271 KVRSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAI--DVSGVSLLVVDRLDSLSK--G 345 (474)
Q Consensus 271 Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~--~l~~l~~lViDEad~ll~--~ 345 (474)
|+++.+... ...|++|..++|+.+...+ . .. +++|||+|||++..+++.... .++.|++|||||+|.+-+ .
T Consensus 149 e~~~~l~~~~~~~gi~V~~~tGd~~~~~~--~-~~-~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG 224 (1724)
T 4f92_B 149 EMVGSFGKRLATYGITVAELTGDHQLCKE--E-IS-ATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRG 224 (1724)
T ss_dssp HHHHHHHHHHTTTTCCEEECCSSCSSCCT--T-GG-GCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTH
T ss_pred HHHHHHHHHHhhCCCEEEEEECCCCCCcc--c-cC-CCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccH
Confidence 999999874 7789999999999875432 1 23 689999999998555544322 378899999999998876 3
Q ss_pred hHHHHHH-------hhCCCCCcEEEEEccCCccHHHHHHHhhcCCc-eEEEccCCcccccCCcEEEEEEcCCch--hHHH
Q 011963 346 DTLSLIR-------QSISGKPHTVVFNDCLTYTSVPAVQNLLLGSI-NRLSLNQSVASQSACIIQSVNVCASDE--EKIL 415 (474)
Q Consensus 346 ~~l~~Il-------~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~-~~v~v~~~~~~~~~~i~q~~~~~~~~~--~K~~ 415 (474)
..++.++ ..++..+|+|++|||+|+ +.+++.++-.++. ....++.. .. +-.+++.++.+.... ....
T Consensus 225 ~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~-~R-PvpL~~~~~~~~~~~~~~~~~ 301 (1724)
T 4f92_B 225 PVLEALVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNS-FR-PVPLEQTYVGITEKKAIKRFQ 301 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGG-GC-SSCEEEECCEECCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCC-Cc-cCccEEEEeccCCcchhhhhH
Confidence 4444433 345788999999999998 7777776644432 12233332 12 234777776654321 1233
Q ss_pred HHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhh
Q 011963 416 KGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKC 455 (474)
Q Consensus 416 ~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~ 455 (474)
.+...+...+..+. ...++||||+|+..|+.+|..|..
T Consensus 302 ~~~~~~~~~v~~~~--~~~~~LVF~~sR~~~~~~A~~l~~ 339 (1724)
T 4f92_B 302 IMNEIVYEKIMEHA--GKNQVLVFVHSRKETGKTARAIRD 339 (1724)
T ss_dssp HHHHHHHHHHTTCC--SSCCEEEECSSTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCCcEEEECCCHHHHHHHHHHHHH
Confidence 34444444444443 367999999999999999988854
No 53
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.95 E-value=5.4e-28 Score=266.24 Aligned_cols=162 Identities=11% Similarity=0.103 Sum_probs=127.4
Q ss_pred CchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHH-HHHHHhccc
Q 011963 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV-RSVCKPLKA 281 (474)
Q Consensus 203 ~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi-~~~~~~l~~ 281 (474)
.++||.++|+.++.|+|+|+++||| +|||++|++|++..+....... .+.++|||+||++|+.|+ .+.+..+..
T Consensus 8 l~~~Q~~~i~~il~g~~~ll~~~TG-sGKTl~~~~~i~~~l~~~~~~~----~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 8 LRPYQMEVAQPALEGKNIIICLPTG-CGKTRVAVYIAKDHLDKKKKAS----EPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp CCHHHHHHHHHHHSSCCEEECCCTT-SCHHHHHHHHHHHHHHHHHHHT----CCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred ccHHHHHHHHHHHhCCCEEEEcCCC-CcHHHHHHHHHHHHHHhccccC----CCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 3455999999999999999999999 9999999999999888754321 246899999999999999 999999855
Q ss_pred CCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHH------HcCCCCCCCcceEEeccccccCC----hhHHHHH
Q 011963 282 FGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLV------SLKAIDVSGVSLLVVDRLDSLSK----GDTLSLI 351 (474)
Q Consensus 282 ~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll------~~~~~~l~~l~~lViDEad~ll~----~~~l~~I 351 (474)
.++++..++|+.....+...+.. +++|||+||++|..++ ....+.+.++.+|||||||++.. ...+..+
T Consensus 83 ~~~~v~~~~g~~~~~~~~~~~~~-~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 83 KWYRVIGLSGDTQLKISFPEVVK-SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 161 (699)
T ss_dssp TTSCEEEEC----CCCCHHHHHH-SCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHH
T ss_pred cCceEEEEeCCcchhhHHHhhhc-CCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHH
Confidence 46999999999876655555655 7999999999999988 45567889999999999999876 2222222
Q ss_pred HhhC-------------CCCCcEEEEEccCCc
Q 011963 352 RQSI-------------SGKPHTVVFNDCLTY 370 (474)
Q Consensus 352 l~~l-------------~~~~q~llfSAT~~~ 370 (474)
+... .+.+|++++|||.+.
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccc
Confidence 2221 156899999999997
No 54
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.94 E-value=1.5e-26 Score=256.24 Aligned_cols=252 Identities=9% Similarity=0.037 Sum_probs=179.7
Q ss_pred HHHHHHHhCCCCccccCCCchhhHHHHHHHhcC------CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcE
Q 011963 185 AIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA------KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPF 258 (474)
Q Consensus 185 ~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g------~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ 258 (474)
.+...+...|| .|||+ |.++|+.++.+ .|++++|||| ||||++|++|++..+.. +.+
T Consensus 357 ~~~~~~~~lpf-~lt~~-----Q~~ai~~I~~~l~~~~~~~~Ll~a~TG-SGKTlvall~il~~l~~----------g~q 419 (780)
T 1gm5_A 357 LAEEFIKSLPF-KLTNA-----QKRAHQEIRNDMISEKPMNRLLQGDVG-SGKTVVAQLAILDNYEA----------GFQ 419 (780)
T ss_dssp HHHHHHHHSSS-CCCHH-----HHHHHHHHHHHHHSSSCCCCEEECCSS-SSHHHHHHHHHHHHHHH----------TSC
T ss_pred HHHHHHHhCCC-CCCHH-----HHHHHHHHHhhccccCCCcEEEEcCCC-CCHHHHHHHHHHHHHHc----------CCe
Confidence 34455677899 89988 99999999886 5999999999 99999999999988753 569
Q ss_pred EEEEeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceE
Q 011963 259 LLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLL 334 (474)
Q Consensus 259 alil~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~l 334 (474)
++||+||++||.|+++.+..+ ..+|+++..++|+...... ...+..+.++|+|+||++|.+ .+.+.++.++
T Consensus 420 vlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lV 494 (780)
T 1gm5_A 420 TAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLV 494 (780)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEE
T ss_pred EEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceE
Confidence 999999999999999999997 5669999999999886653 455666569999999998854 4668899999
Q ss_pred EeccccccCChhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHH
Q 011963 335 VVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKI 414 (474)
Q Consensus 335 ViDEad~ll~~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~ 414 (474)
||||+|++... + ...+......+|+++||||.++.... ..++.+....+. ... ......+...++ . ..+.
T Consensus 495 VIDEaHr~g~~-q-r~~l~~~~~~~~vL~mSATp~p~tl~--~~~~g~~~~s~i-~~~-p~~r~~i~~~~~--~--~~~~ 564 (780)
T 1gm5_A 495 IIDEQHRFGVK-Q-REALMNKGKMVDTLVMSATPIPRSMA--LAFYGDLDVTVI-DEM-PPGRKEVQTMLV--P--MDRV 564 (780)
T ss_dssp EEESCCCC-------CCCCSSSSCCCEEEEESSCCCHHHH--HHHTCCSSCEEE-CCC-CSSCCCCEECCC--C--SSTH
T ss_pred EecccchhhHH-H-HHHHHHhCCCCCEEEEeCCCCHHHHH--HHHhCCcceeee-ecc-CCCCcceEEEEe--c--cchH
Confidence 99999998641 1 11222234578999999998775433 334444321222 111 111223433322 2 2233
Q ss_pred HHHHHHHHHHhhccCCCCCCcEEEEEccc--------hhHHHHHHHHhh---CCCccc--------chHHHHHHHhhc
Q 011963 415 LKGIQVLDHAYGDHFHSEPLKVLYIVGKD--------SKFQNLVSTLKC---KGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 415 ~~l~~lL~~ll~~~~~~~~~k~LVF~~s~--------~~a~~l~~~L~~---~gi~v~--------~~r~~~i~~Fk~ 473 (474)
..++..+...+.. +.+++|||+++ ..++.++..|.. .|+.+. .+|+.++++|++
T Consensus 565 ~~l~~~i~~~l~~-----g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~ 637 (780)
T 1gm5_A 565 NEVYEFVRQEVMR-----GGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAE 637 (780)
T ss_dssp HHHHHHHHHHTTT-----SCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTT
T ss_pred HHHHHHHHHHHhc-----CCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHC
Confidence 4445556555433 56999999976 458899999988 466664 688899999985
No 55
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.94 E-value=2.9e-27 Score=248.17 Aligned_cols=223 Identities=10% Similarity=0.027 Sum_probs=158.4
Q ss_pred CCCccccCCCchhhHHHHHHHhcCCcE-EEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHH
Q 011963 194 GVEQDNPLFVNSWGIEFWKCYSSAKDI-LETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (474)
Q Consensus 194 g~~~ptpi~~~~~Q~~~i~~~l~g~dv-l~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi 272 (474)
|+..|+|| |. +||.++.|+|+ +++|||| ||||++|++|++..+.. .++++|||+|||+||.|+
T Consensus 1 G~~q~~~i-----q~-~i~~~l~~~~~~lv~a~TG-sGKT~~~~~~~l~~~~~---------~~~~~lvl~Ptr~La~Q~ 64 (451)
T 2jlq_A 1 GSAMGEPD-----YE-VDEDIFRKKRLTIMDLHPG-AGKTKRILPSIVREALL---------RRLRTLILAPTRVVAAEM 64 (451)
T ss_dssp CCCCCSCC-----CC-CCGGGGSTTCEEEECCCTT-SSCCTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHH
T ss_pred CCCCCCCc-----HH-HHHHHHhcCCeEEEECCCC-CCHhhHHHHHHHHHHHh---------cCCcEEEECCCHHHHHHH
Confidence 88999999 96 79999999987 9999999 99999999999988765 367999999999999999
Q ss_pred HHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC--hh-HHH
Q 011963 273 RSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GD-TLS 349 (474)
Q Consensus 273 ~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~--~~-~l~ 349 (474)
++.+..+ .+....+.... .. ..+..|.|+|||.|...+... ..+.++++|||||||++ + .. .+.
T Consensus 65 ~~~l~g~-----~v~~~~~~~~~-----~~-~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~ 131 (451)
T 2jlq_A 65 EEALRGL-----PIRYQTPAVKS-----DH-TGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARG 131 (451)
T ss_dssp HHHTTTS-----CEEECCTTCSC-----CC-CSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHH
T ss_pred HHHhcCc-----eeeeeeccccc-----cC-CCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHH
Confidence 9987533 22222221110 11 125679999999998877644 56889999999999987 5 22 222
Q ss_pred HHHh-hCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhcc
Q 011963 350 LIRQ-SISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDH 428 (474)
Q Consensus 350 ~Il~-~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~ 428 (474)
.+.. ..++++|+++||||++..+..+ ++.++. .+.+..... .. .+ .... ..+.. .
T Consensus 132 ~~~~~~~~~~~~~i~~SAT~~~~~~~~---~~~~~~-~~~~~~~~p--~~----~~------~~~~----~~l~~----~ 187 (451)
T 2jlq_A 132 YISTRVEMGEAAAIFMTATPPGSTDPF---PQSNSP-IEDIEREIP--ER----SW------NTGF----DWITD----Y 187 (451)
T ss_dssp HHHHHHHTTSCEEEEECSSCTTCCCSS---CCCSSC-EEEEECCCC--SS----CC------SSSC----HHHHH----C
T ss_pred HHHHhhcCCCceEEEEccCCCccchhh---hcCCCc-eEecCccCC--ch----hh------HHHH----HHHHh----C
Confidence 2222 2356799999999999865432 333443 333332100 00 00 0111 22322 1
Q ss_pred CCCCCCcEEEEEccchhHHHHHHHHhhCCCccc----chHHHHHHHhhc
Q 011963 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS----TGSNCIVSHIKN 473 (474)
Q Consensus 429 ~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~----~~r~~~i~~Fk~ 473 (474)
.+++||||+|+..|+.++..|...|+.+. ..++.+++.|++
T Consensus 188 ----~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~~~~~f~~ 232 (451)
T 2jlq_A 188 ----QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKL 232 (451)
T ss_dssp ----CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHHHHGGGGGS
T ss_pred ----CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHHHHHHHhhcc
Confidence 56999999999999999999999999886 456678888875
No 56
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.94 E-value=1.2e-27 Score=259.75 Aligned_cols=236 Identities=10% Similarity=0.022 Sum_probs=166.0
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLF 261 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~ali 261 (474)
+++.++++|... +..|+|| |+.+||.++.|+|+|++|||| ||||++|++|+++.+.. .++++||
T Consensus 157 ~~~~~~~~l~~~-~~~~lpi-----q~~~i~~l~~g~dvlv~a~TG-SGKT~~~~lpil~~l~~---------~~~~vLv 220 (618)
T 2whx_A 157 KSGDYVSAITQA-ERIGEPD-----YEVDEDIFRKKRLTIMDLHPG-AGKTKRILPSIVREALK---------RRLRTLI 220 (618)
T ss_dssp -----CEECBCC-CCCCCCC-----CCCCGGGGSTTCEEEECCCTT-SSTTTTHHHHHHHHHHH---------TTCCEEE
T ss_pred chHHHHHHHhhc-cccCCCc-----cccCHHHHhcCCeEEEEcCCC-CCHHHHHHHHHHHHHHh---------CCCeEEE
Confidence 455555556443 6899999 666899999999999999999 99999999999999876 3679999
Q ss_pred EeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccc
Q 011963 262 LVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS 341 (474)
Q Consensus 262 l~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ 341 (474)
|+||||||.|+++.+..+ .+. +.++.- ......+-.|.++|.+.|...+... ..++++++|||||||+
T Consensus 221 l~PtreLa~Qi~~~l~~~-----~v~-~~~~~l-----~~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~ 288 (618)
T 2whx_A 221 LAPTRVVAAEMEEALRGL-----PIR-YQTPAV-----KSDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHF 288 (618)
T ss_dssp EESSHHHHHHHHHHTTTS-----CEE-ECCTTS-----SCCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTC
T ss_pred EcChHHHHHHHHHHhcCC-----cee-Eecccc-----eeccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCC
Confidence 999999999999887633 222 222210 0011113457788888887655543 4589999999999999
Q ss_pred cCC--hhHHHHHHhhCC-CCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHH
Q 011963 342 LSK--GDTLSLIRQSIS-GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGI 418 (474)
Q Consensus 342 ll~--~~~l~~Il~~l~-~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~ 418 (474)
|.. ...+..|+..++ .++|+++||||++..+..++. .++. .+.+... ++.. +...++
T Consensus 289 ~~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~-~~~v~~~--------------~~~~--~~~~ll 348 (618)
T 2whx_A 289 TDPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSP-IEDIERE--------------IPER--SWNTGF 348 (618)
T ss_dssp CSHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSC-EEEEECC--------------CCSS--CCSSSC
T ss_pred CCccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCc-eeeeccc--------------CCHH--HHHHHH
Confidence 932 557777777775 689999999999987553322 2333 3333321 0111 111111
Q ss_pred HHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc----chHHHHHHHhhc
Q 011963 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS----TGSNCIVSHIKN 473 (474)
Q Consensus 419 ~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~----~~r~~~i~~Fk~ 473 (474)
..|. .. .+++||||+|++.|+.++..|...|+++. .+|+.++++|++
T Consensus 349 ~~l~---~~-----~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~R~~~l~~F~~ 399 (618)
T 2whx_A 349 DWIT---DY-----QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKL 399 (618)
T ss_dssp HHHH---HC-----CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTTHHHHTTHHHH
T ss_pred HHHH---hC-----CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChHHHHHHHHhhcC
Confidence 2222 22 56999999999999999999999999876 578889999974
No 57
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.93 E-value=3.4e-25 Score=255.47 Aligned_cols=244 Identities=10% Similarity=0.030 Sum_probs=182.1
Q ss_pred hCCCCccccCCCchhhHHHHHHHhc----CC--cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEecc
Q 011963 192 HDGVEQDNPLFVNSWGIEFWKCYSS----AK--DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS 265 (474)
Q Consensus 192 ~~g~~~ptpi~~~~~Q~~~i~~~l~----g~--dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Pt 265 (474)
..||. +||+ |.++|+.++. |+ |+|+++||| ||||++|+++++..+. .+.+++||+||
T Consensus 599 ~f~~~-~t~~-----Q~~ai~~il~~~~~g~p~d~ll~~~TG-sGKT~val~aa~~~~~----------~g~~vlvlvPt 661 (1151)
T 2eyq_A 599 SFPFE-TTPD-----QAQAINAVLSDMCQPLAMDRLVCGDVG-FGKTEVAMRAAFLAVD----------NHKQVAVLVPT 661 (1151)
T ss_dssp TCCSC-CCHH-----HHHHHHHHHHHHHSSSCCEEEEECCCC-TTTHHHHHHHHHHHHT----------TTCEEEEECSS
T ss_pred hCCCC-CCHH-----HHHHHHHHHHHHhcCCcCcEEEECCCC-CCHHHHHHHHHHHHHH----------hCCeEEEEech
Confidence 34665 5777 9999999987 76 999999999 9999999999886543 36699999999
Q ss_pred HHHHHHHHHHHHhc-ccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccc
Q 011963 266 QEKAAKVRSVCKPL-KAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS 341 (474)
Q Consensus 266 reLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ 341 (474)
++||.|+++.+..+ ...++++..++|..+...+ ...+..+.++|+|+||+.|. ..+.+.++.+|||||||+
T Consensus 662 ~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~ 736 (1151)
T 2eyq_A 662 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHR 736 (1151)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGG
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHh
Confidence 99999999999875 6668999999887765443 45566656999999998662 456789999999999999
Q ss_pred cCChhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHH
Q 011963 342 LSKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVL 421 (474)
Q Consensus 342 ll~~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL 421 (474)
+.. ....++..++.++|+++||||+++....++...+.++. .+... ......+.+++.... +......++
T Consensus 737 ~g~--~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~-~i~~~---~~~r~~i~~~~~~~~----~~~i~~~il 806 (1151)
T 2eyq_A 737 FGV--RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS-IIATP---PARRLAVKTFVREYD----SMVVREAIL 806 (1151)
T ss_dssp SCH--HHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEE-ECCCC---CCBCBCEEEEEEECC----HHHHHHHHH
T ss_pred cCh--HHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCce-EEecC---CCCccccEEEEecCC----HHHHHHHHH
Confidence 743 33455566667899999999998877766666555443 22222 122234555555443 222222333
Q ss_pred HHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhC--CCccc--------chHHHHHHHhhc
Q 011963 422 DHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK--GYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 422 ~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~--gi~v~--------~~r~~~i~~Fk~ 473 (474)
..+ . .+++++||||++..++.++..|... |+.+. .+|+.++++|++
T Consensus 807 ~~l-~-----~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~ 862 (1151)
T 2eyq_A 807 REI-L-----RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 862 (1151)
T ss_dssp HHH-T-----TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHT
T ss_pred HHH-h-----cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHc
Confidence 333 2 2679999999999999999999887 66654 678889999975
No 58
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.92 E-value=2.9e-25 Score=208.08 Aligned_cols=164 Identities=12% Similarity=0.091 Sum_probs=122.4
Q ss_pred CCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHH-
Q 011963 193 DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAK- 271 (474)
Q Consensus 193 ~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Q- 271 (474)
.+...|+|+ |.++++.++.|+++++++||| +|||++|++|++..+....... .+.++|||+||++|+.|
T Consensus 29 ~~~~~l~~~-----Q~~~i~~~~~~~~~li~~~tG-sGKT~~~~~~~~~~~~~~~~~~----~~~~~lil~p~~~L~~q~ 98 (216)
T 3b6e_A 29 EPELQLRPY-----QMEVAQPALEGKNIIICLPTG-SGKTRVAVYIAKDHLDKKKKAS----EPGKVIVLVNKVLLVEQL 98 (216)
T ss_dssp SCCCCCCHH-----HHHHHHHHHTTCCEEEECSCH-HHHHHHHHHHHHHHHHHHHHTT----CCCCEEEEESSHHHHHHH
T ss_pred cCCCCchHH-----HHHHHHHHhcCCCEEEEcCCC-CCHHHHHHHHHHHHHhhccccc----CCCcEEEEECHHHHHHHH
Confidence 344566666 999999999999999999999 9999999999998876643221 36789999999999999
Q ss_pred HHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCC------CCCCCcceEEeccccccCC-
Q 011963 272 VRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA------IDVSGVSLLVVDRLDSLSK- 344 (474)
Q Consensus 272 i~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~------~~l~~l~~lViDEad~ll~- 344 (474)
+.+.+..+...++++..++|+.........+.. +++|+|+||++|..++.... +.+.++.+|||||||++++
T Consensus 99 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~ 177 (216)
T 3b6e_A 99 FRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVK-SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE 177 (216)
T ss_dssp HHHTHHHHHTTTSCEEECCC---CCCCHHHHHH-HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC------
T ss_pred HHHHHHHHhccCceEEEEeCCcccchhHHhhcc-CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC
Confidence 788888886558899999998765544444545 68999999999999988743 6788999999999999987
Q ss_pred --hhH-HHHHHhhC-------------CCCCcEEEEEcc
Q 011963 345 --GDT-LSLIRQSI-------------SGKPHTVVFNDC 367 (474)
Q Consensus 345 --~~~-l~~Il~~l-------------~~~~q~llfSAT 367 (474)
... +..++... .+.++++++|||
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 178 AVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred CcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 222 22222211 157899999998
No 59
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.92 E-value=6.8e-25 Score=232.88 Aligned_cols=248 Identities=9% Similarity=-0.030 Sum_probs=175.2
Q ss_pred ccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHH
Q 011963 197 QDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (474)
Q Consensus 197 ~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 276 (474)
.|+|. |.++|+.++.++|+++++||| ||||++|++|++..+.. ...++|||+||++|+.|+++.+
T Consensus 113 ~l~~~-----Q~~ai~~~~~~~~~ll~~~tG-sGKT~~~~~~~~~~~~~---------~~~~vlvl~P~~~L~~Q~~~~~ 177 (510)
T 2oca_A 113 EPHWY-----QKDAVFEGLVNRRRILNLPTS-AGRSLIQALLARYYLEN---------YEGKILIIVPTTALTTQMADDF 177 (510)
T ss_dssp CCCHH-----HHHHHHHHHHHSEEEEECCST-TTHHHHHHHHHHHHHHH---------CSSEEEEEESSHHHHHHHHHHH
T ss_pred CCCHH-----HHHHHHHHHhcCCcEEEeCCC-CCHHHHHHHHHHHHHhC---------CCCeEEEEECcHHHHHHHHHHH
Confidence 56655 999999999999999999999 99999999999877653 2449999999999999999999
Q ss_pred HhcccC-CcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhC
Q 011963 277 KPLKAF-GIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI 355 (474)
Q Consensus 277 ~~l~~~-~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l 355 (474)
..+... ++.+..++|+.+...+ +.. +++|+|+||+.|.. .....+.++.+|||||||++.. ..+..++..+
T Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~~---~~~-~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~-~~~~~il~~~ 249 (510)
T 2oca_A 178 VDYRLFSHAMIKKIGGGASKDDK---YKN-DAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG-KSISSIISGL 249 (510)
T ss_dssp HHTTSSCGGGEEECGGGCCTTGG---GCT-TCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH-HHHHHHGGGC
T ss_pred HHhhcCCccceEEEecCCccccc---ccc-CCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc-ccHHHHHHhc
Confidence 988544 6789999999776544 333 78999999997643 3345678899999999999984 5688888888
Q ss_pred CCCCcEEEEEccCCccHHHHH-HHhhcCCceEEEccCCc-----ccccCCcEEEEEEcCC--------------------
Q 011963 356 SGKPHTVVFNDCLTYTSVPAV-QNLLLGSINRLSLNQSV-----ASQSACIIQSVNVCAS-------------------- 409 (474)
Q Consensus 356 ~~~~q~llfSAT~~~~v~~l~-~~~l~~p~~~v~v~~~~-----~~~~~~i~q~~~~~~~-------------------- 409 (474)
+..+++++||||.+.....+. ...+.++. .+.+.... ......+....+..+.
T Consensus 250 ~~~~~~l~lSATp~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (510)
T 2oca_A 250 NNCMFKFGLSGSLRDGKANIMQYVGMFGEI-FKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITG 328 (510)
T ss_dssp TTCCEEEEEESCGGGCSSCHHHHHHHHCSE-ECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHT
T ss_pred ccCcEEEEEEeCCCCCcccHHHhHHhhCCe-EEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhc
Confidence 888999999999987643322 22233332 22222110 0011111222222210
Q ss_pred chhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 410 DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 410 ~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
...+...+..++...+.. . ..++||||+ ...++.++..|...|.++. .+|+.++++|++
T Consensus 329 ~~~~~~~l~~~l~~~~~~-~---~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~ 395 (510)
T 2oca_A 329 LSKRNKWIAKLAIKLAQK-D---ENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAEN 395 (510)
T ss_dssp CHHHHHHHHHHHHHHHTT-T---CEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhc-C---CCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhC
Confidence 112333344555554432 2 456666666 8899999999999877665 577888999975
No 60
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.92 E-value=4.6e-27 Score=257.06 Aligned_cols=230 Identities=13% Similarity=0.064 Sum_probs=152.1
Q ss_pred HHHhCCCC-----ccccCCCchhhH-----HHHHHHh------cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCC
Q 011963 189 AMRHDGVE-----QDNPLFVNSWGI-----EFWKCYS------SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGF 252 (474)
Q Consensus 189 ~l~~~g~~-----~ptpi~~~~~Q~-----~~i~~~l------~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~ 252 (474)
+|..+||. .|||| |. ++||.++ .|+|+|++|||| ||||++|++|+++.+..
T Consensus 202 ~l~~~Gf~~~~~~~pt~I-----Q~~~r~~~aIp~~l~~~~l~~g~dvlv~apTG-SGKTl~~ll~il~~l~~------- 268 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAI-----VQGERVEEPVPEAYNPEMLKKRQLTVLDLHPG-AGKTRRILPQIIKDAIQ------- 268 (673)
T ss_dssp EEEEEEEECSSSCEEEEE-----ECC-------CCCCCGGGGSTTCEEEECCCTT-TTTTTTHHHHHHHHHHH-------
T ss_pred EeeeccccccCCCccCce-----eeccccccchHHHhhHHHHhcCCeEEEEeCCC-CCHHHHHHHHHHHHHHh-------
Confidence 56667888 99999 88 9999998 899999999999 99999999999988765
Q ss_pred CCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 253 SFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 253 ~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
.++++|||+|||+||.|+++.+..+ ++. ...+.. . .....+--+-+.+.+.+...+.. ...+.++.
T Consensus 269 --~~~~~lilaPTr~La~Q~~~~l~~~---~i~--~~~~~l--~----~v~tp~~ll~~l~~~~l~~~l~~-~~~l~~l~ 334 (673)
T 2wv9_A 269 --KRLRTAVLAPTRVVAAEMAEALRGL---PVR--YLTPAV--Q----REHSGNEIVDVMCHATLTHRLMS-PLRVPNYN 334 (673)
T ss_dssp --TTCCEEEEESSHHHHHHHHHHTTTS---CCE--ECCC---------CCCCSCCCEEEEEHHHHHHHHHS-SSCCCCCS
T ss_pred --CCCcEEEEccHHHHHHHHHHHHhcC---Cee--eecccc--c----ccCCHHHHHHHHHhhhhHHHHhc-ccccccce
Confidence 3679999999999999999888755 332 111100 0 00010112233344444333322 25789999
Q ss_pred eEEeccccccCC--hhHHHHHHhhCC-CCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCC
Q 011963 333 LLVVDRLDSLSK--GDTLSLIRQSIS-GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCAS 409 (474)
Q Consensus 333 ~lViDEad~ll~--~~~l~~Il~~l~-~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~ 409 (474)
+|||||||++.. ...+..+...++ ..+|+++||||++..+..+... ..|+ +.+.. .++.
T Consensus 335 lvViDEaH~~~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i--~~v~~--------------~~~~ 396 (673)
T 2wv9_A 335 LFVMDEAHFTDPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPV--HDVSS--------------EIPD 396 (673)
T ss_dssp EEEEESTTCCCHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCE--EEEEC--------------CCCS
T ss_pred EEEEeCCcccCccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCce--EEEee--------------ecCH
Confidence 999999999922 233344444443 6799999999999864432211 1111 11111 1111
Q ss_pred chhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc----chHHHHHHHhhc
Q 011963 410 DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS----TGSNCIVSHIKN 473 (474)
Q Consensus 410 ~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~----~~r~~~i~~Fk~ 473 (474)
.... .++..+.. . .+++||||+|++.|+.++..|...|+++. .+|+.+++.|++
T Consensus 397 -~~~~----~~l~~l~~--~---~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~eR~~v~~~F~~ 454 (673)
T 2wv9_A 397 -RAWS----SGFEWITD--Y---AGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRKSYDTEYPKCKN 454 (673)
T ss_dssp -SCCS----SCCHHHHS--C---CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSSSHHHHGGGGGT
T ss_pred -HHHH----HHHHHHHh--C---CCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChHHHHHHHHHHHC
Confidence 1111 12222222 2 67999999999999999999999999876 688889999975
No 61
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.3e-24 Score=208.17 Aligned_cols=172 Identities=11% Similarity=0.027 Sum_probs=130.1
Q ss_pred HHhCCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHH
Q 011963 190 MRHDGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (474)
Q Consensus 190 l~~~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa 269 (474)
+...+...++++ |.++++.+..|++++++|||| ||||.+|.++++..+...... .++++|+++|||+|+
T Consensus 54 ~~~~~~~p~~~~-----q~~~i~~i~~g~~~~i~g~TG-sGKTt~~~~~~~~~~~~~~~~-----~~~~~l~~~p~~~la 122 (235)
T 3llm_A 54 LQERELLPVKKF-----ESEILEAISQNSVVIIRGATG-CGKTTQVPQFILDDFIQNDRA-----AECNIVVTQPRRISA 122 (235)
T ss_dssp HHHHHTSGGGGG-----HHHHHHHHHHCSEEEEECCTT-SSHHHHHHHHHHHHHHHTTCG-----GGCEEEEEESSHHHH
T ss_pred HHHHhcCChHHH-----HHHHHHHHhcCCEEEEEeCCC-CCcHHhHHHHHhcchhhcCCC-----CceEEEEeccchHHH
Confidence 333344456667 999999999999999999999 999999999999877664321 356999999999999
Q ss_pred HHHHHHHHhc-c-cCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccccc-CC--
Q 011963 270 AKVRSVCKPL-K-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL-SK-- 344 (474)
Q Consensus 270 ~Qi~~~~~~l-~-~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~l-l~-- 344 (474)
.|+.+.+... . ..+..++.-..... .....+++|+|+|||+|++++.. .++++++|||||||++ ++
T Consensus 123 ~q~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~ 193 (235)
T 3llm_A 123 VSVAERVAFERGEEPGKSCGYSVRFES------ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTD 193 (235)
T ss_dssp HHHHHHHHHTTTCCTTSSEEEEETTEE------ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHH
T ss_pred HHHHHHHHHHhccccCceEEEeechhh------ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchH
Confidence 9999888765 2 23554443222211 11112589999999999999876 4899999999999997 55
Q ss_pred --hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCc
Q 011963 345 --GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSI 384 (474)
Q Consensus 345 --~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~ 384 (474)
...+..++...+ +.|+++||||++... +++.+.+.|+
T Consensus 194 ~~~~~l~~i~~~~~-~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 194 FLLVVLRDVVQAYP-EVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHHHHCT-TSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHHHHHHhhCC-CCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 346667776654 799999999999865 6666666665
No 62
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=3.7e-23 Score=225.72 Aligned_cols=130 Identities=10% Similarity=0.100 Sum_probs=113.7
Q ss_pred CCCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHH
Q 011963 193 DGVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKV 272 (474)
Q Consensus 193 ~g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi 272 (474)
+|| .|||| |..+||.++.|+ |+.|+|| ||||++|.+|++...+. +.+++||+||++||.|+
T Consensus 76 lG~-~Pt~V-----Q~~~ip~LlqG~--IaeakTG-eGKTLvf~Lp~~L~aL~----------G~qv~VvTPTreLA~Qd 136 (997)
T 2ipc_A 76 LGM-RHFDV-----QLIGGAVLHEGK--IAEMKTG-EGKTLVATLAVALNALT----------GKGVHVVTVNDYLARRD 136 (997)
T ss_dssp TCC-CCCHH-----HHHHHHHHHTTS--EEECCST-HHHHHHHHHHHHHHHTT----------CSCCEEEESSHHHHHHH
T ss_pred hCC-CCcHH-----HHhhcccccCCc--eeeccCC-CchHHHHHHHHHHHHHh----------CCCEEEEeCCHHHHHHH
Confidence 699 99999 999999999999 9999999 99999999999744432 55899999999999999
Q ss_pred HHHHHhc-ccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHH-HHHHHcC------CCCCC---CcceEEeccccc
Q 011963 273 RSVCKPL-KAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERL-LKLVSLK------AIDVS---GVSLLVVDRLDS 341 (474)
Q Consensus 273 ~~~~~~l-~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL-~~ll~~~------~~~l~---~l~~lViDEad~ 341 (474)
+.++..| ..+|+++++++||.+... ..+.. ++||+||||++| .++|+.+ .+.++ ++.++||||||+
T Consensus 137 ae~m~~l~~~lGLsv~~i~Gg~~~~~--r~~ay-~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 137 AEWMGPVYRGLGLSVGVIQHASTPAE--RRKAY-LADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp HHHHHHHHHTTTCCEEECCTTCCHHH--HHHHH-TSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHH--HHHHc-CCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 9999998 666999999999998543 44444 699999999999 8988775 35678 999999999999
Q ss_pred cCC
Q 011963 342 LSK 344 (474)
Q Consensus 342 ll~ 344 (474)
||.
T Consensus 214 mLi 216 (997)
T 2ipc_A 214 ILI 216 (997)
T ss_dssp HTT
T ss_pred HHH
Confidence 983
No 63
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.91 E-value=8.5e-25 Score=236.84 Aligned_cols=198 Identities=11% Similarity=-0.013 Sum_probs=144.0
Q ss_pred hHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEE
Q 011963 207 GIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHT 286 (474)
Q Consensus 207 Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v 286 (474)
|..+++.+..++|++++|||| ||||++|.+|+++ .+.++||++|||+||.|+++.+... ++..+
T Consensus 222 q~~i~~~L~~~~~vlv~ApTG-SGKT~a~~l~ll~-------------~g~~vLVl~PTReLA~Qia~~l~~~--~g~~v 285 (666)
T 3o8b_A 222 NSSPPAVPQSFQVAHLHAPTG-SGKSTKVPAAYAA-------------QGYKVLVLNPSVAATLGFGAYMSKA--HGIDP 285 (666)
T ss_dssp CCSCCCCCSSCEEEEEECCTT-SCTTTHHHHHHHH-------------TTCCEEEEESCHHHHHHHHHHHHHH--HSCCC
T ss_pred HHHHHHHHHcCCeEEEEeCCc-hhHHHHHHHHHHH-------------CCCeEEEEcchHHHHHHHHHHHHHH--hCCCe
Confidence 555555556778999999999 9999999999884 2558999999999999999876554 24566
Q ss_pred EEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC--hhHHHHHHhhCCCCCc--EE
Q 011963 287 VSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPH--TV 362 (474)
Q Consensus 287 ~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q--~l 362 (474)
...+|+.. +.. +++|+|+|||+| +....+.++++++|||||||++-. ...+..|++.++..+| ++
T Consensus 286 g~~vG~~~-------~~~-~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~lli 354 (666)
T 3o8b_A 286 NIRTGVRT-------ITT-GAPVTYSTYGKF---LADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVV 354 (666)
T ss_dssp EEECSSCE-------ECC-CCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEE
T ss_pred eEEECcEe-------ccC-CCCEEEECcHHH---HhCCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEE
Confidence 67788754 233 799999999997 567788899999999999965433 6678889999987777 67
Q ss_pred EEEccCCccHHHHHHHhhcCCc-eEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEc
Q 011963 363 VFNDCLTYTSVPAVQNLLLGSI-NRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVG 441 (474)
Q Consensus 363 lfSAT~~~~v~~l~~~~l~~p~-~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~ 441 (474)
+||||++..+. ...|. ..+.+... ..+ .... .... +.... .+++||||+
T Consensus 355 l~SAT~~~~i~------~~~p~i~~v~~~~~-----~~i----~~~~-~~~~-----------l~~~~---~~~vLVFv~ 404 (666)
T 3o8b_A 355 LATATPPGSVT------VPHPNIEEVALSNT-----GEI----PFYG-KAIP-----------IEAIR---GGRHLIFCH 404 (666)
T ss_dssp EEESSCTTCCC------CCCTTEEEEECBSC-----SSE----EETT-EEEC-----------GGGSS---SSEEEEECS
T ss_pred EECCCCCcccc------cCCcceEEEeeccc-----chh----HHHH-hhhh-----------hhhcc---CCcEEEEeC
Confidence 77999998422 12222 11211111 011 1111 1000 11112 689999999
Q ss_pred cchhHHHHHHHHhhCCCccc
Q 011963 442 KDSKFQNLVSTLKCKGYSIS 461 (474)
Q Consensus 442 s~~~a~~l~~~L~~~gi~v~ 461 (474)
|++.|+.+++.|+..|+++.
T Consensus 405 Tr~~ae~la~~L~~~g~~v~ 424 (666)
T 3o8b_A 405 SKKKCDELAAKLSGLGINAV 424 (666)
T ss_dssp CHHHHHHHHHHHHTTTCCEE
T ss_pred CHHHHHHHHHHHHhCCCcEE
Confidence 99999999999999999875
No 64
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.91 E-value=3.2e-24 Score=232.03 Aligned_cols=256 Identities=10% Similarity=0.008 Sum_probs=147.7
Q ss_pred CCCchhhHHHHHHHhc----C-CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHH-H
Q 011963 201 LFVNSWGIEFWKCYSS----A-KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR-S 274 (474)
Q Consensus 201 i~~~~~Q~~~i~~~l~----g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~-~ 274 (474)
+..++||.++|+.++. | +++++++||| ||||+++ ++++..+............++++|||+||++|+.|++ +
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TG-sGKT~~~-~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATG-TGKTVVA-FQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTT-SCHHHHH-HHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCC-CChHHHH-HHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHH
Confidence 3455669999999876 5 5799999999 9999996 4566566553211111224789999999999999999 6
Q ss_pred HHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHc----CCCCCCCcceEEeccccccCC--hhHH
Q 011963 275 VCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSL----KAIDVSGVSLLVVDRLDSLSK--GDTL 348 (474)
Q Consensus 275 ~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~----~~~~l~~l~~lViDEad~ll~--~~~l 348 (474)
.+..+ +..+..+.++. +.. +.+|+|+||++|..++.. ..+....+.+|||||||++.. ...+
T Consensus 255 ~~~~~---~~~~~~~~~~~--------~~~-~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~ 322 (590)
T 3h1t_A 255 TFTPF---GDARHKIEGGK--------VVK-SREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNW 322 (590)
T ss_dssp CCTTT---CSSEEECCC----------CCS-SCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------C
T ss_pred HHHhc---chhhhhhhccC--------CCC-CCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHH
Confidence 66655 44444444432 223 689999999999887652 345667899999999999987 4778
Q ss_pred HHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcc-cccCCcEEEE-----------------------
Q 011963 349 SLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVA-SQSACIIQSV----------------------- 404 (474)
Q Consensus 349 ~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~-~~~~~i~q~~----------------------- 404 (474)
..|+..++ ..++++||||...........+++.+.....+..... ..........
T Consensus 323 ~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (590)
T 3h1t_A 323 REILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGRE 401 (590)
T ss_dssp HHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC----------------
T ss_pred HHHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccc
Confidence 88888887 4789999999876554444555555542322211000 0000000000
Q ss_pred -----EEcCCc------hhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCc--------cc----
Q 011963 405 -----NVCASD------EEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS--------IS---- 461 (474)
Q Consensus 405 -----~~~~~~------~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~--------v~---- 461 (474)
+..... ..+...+...|..++.... ..+++||||+++..|+.++..|...+.. +.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~--~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g 479 (590)
T 3h1t_A 402 IPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTD--RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTS 479 (590)
T ss_dssp -------CCSHHHHHHHHHTHHHHHHHHHHHHHHHC--TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSS
T ss_pred cccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcC--CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeC
Confidence 000000 1123344445555555432 2589999999999999999999876542 11
Q ss_pred --ch-HHHHHHHhhc
Q 011963 462 --TG-SNCIVSHIKN 473 (474)
Q Consensus 462 --~~-r~~~i~~Fk~ 473 (474)
.+ |+.++++|++
T Consensus 480 ~~~~~r~~~l~~F~~ 494 (590)
T 3h1t_A 480 EEGKIGKGHLSRFQE 494 (590)
T ss_dssp TTHHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHHhC
Confidence 23 8889999986
No 65
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.91 E-value=4.2e-26 Score=238.61 Aligned_cols=201 Identities=10% Similarity=0.057 Sum_probs=131.8
Q ss_pred HHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecC
Q 011963 213 CYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPG 292 (474)
Q Consensus 213 ~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg 292 (474)
+++.|+|++++|||| ||||++|++|+++.+.. .++++|||+||++||.|+++.+..+ ++. ...+
T Consensus 4 ~l~~g~~vlv~a~TG-SGKT~~~l~~~l~~~~~---------~~~~~lil~Ptr~La~Q~~~~l~~~---~v~--~~~~- 67 (440)
T 1yks_A 4 MLKKGMTTVLDFHPG-AGKTRRFLPQILAECAR---------RRLRTLVLAPTRVVLSEMKEAFHGL---DVK--FHTQ- 67 (440)
T ss_dssp TTSTTCEEEECCCTT-SSTTTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTTTS---CEE--EESS-
T ss_pred HhhCCCCEEEEcCCC-CCHHHHHHHHHHHHHHh---------cCCeEEEEcchHHHHHHHHHHHhcC---CeE--Eecc-
Confidence 467899999999999 99999999999998775 3679999999999999999988754 222 1111
Q ss_pred CCHHHHHHHHhcCCCcE-EEEChHHHHHHHHc--------CCCCCCCcceEEeccccccCC---hhHHHHHHhhC-CCCC
Q 011963 293 AAIDHQITGLRSCEPEF-LVSTPERLLKLVSL--------KAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSI-SGKP 359 (474)
Q Consensus 293 ~~~~~q~~~l~~~~~~I-lV~TP~rL~~ll~~--------~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l-~~~~ 359 (474)
.+ .|+||+++++++.. ....+.++.+|||||||++ + ...+..+...+ +.++
T Consensus 68 ---------------~~~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~ 131 (440)
T 1yks_A 68 ---------------AFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANES 131 (440)
T ss_dssp ---------------CCCCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSC
T ss_pred ---------------cceeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCc
Confidence 11 37788777644332 2345899999999999999 4 22333333333 3679
Q ss_pred cEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEE
Q 011963 360 HTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYI 439 (474)
Q Consensus 360 q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF 439 (474)
|+++||||+++.+..++.. ..+. ..+ ...++.. .... ++..|.. . .+++|||
T Consensus 132 ~~l~~SAT~~~~~~~~~~~--~~~~--~~~--------------~~~~~~~-~~~~-~~~~l~~---~-----~~~~lVF 183 (440)
T 1yks_A 132 ATILMTATPPGTSDEFPHS--NGEI--EDV--------------QTDIPSE-PWNT-GHDWILA---D-----KRPTAWF 183 (440)
T ss_dssp EEEEECSSCTTCCCSSCCC--SSCE--EEE--------------ECCCCSS-CCSS-SCHHHHH---C-----CSCEEEE
T ss_pred eEEEEeCCCCchhhhhhhc--CCCe--eEe--------------eeccChH-HHHH-HHHHHHh---c-----CCCEEEE
Confidence 9999999998865433221 1111 111 1112211 1111 1122222 2 5799999
Q ss_pred EccchhHHHHHHHHhhCCCccc----chHHHHHHHhhc
Q 011963 440 VGKDSKFQNLVSTLKCKGYSIS----TGSNCIVSHIKN 473 (474)
Q Consensus 440 ~~s~~~a~~l~~~L~~~gi~v~----~~r~~~i~~Fk~ 473 (474)
|+|++.|+.++..|+..|+++. .+|+.++++|++
T Consensus 184 ~~s~~~a~~l~~~L~~~~~~v~~lhg~~R~~~~~~F~~ 221 (440)
T 1yks_A 184 LPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQ 221 (440)
T ss_dssp CSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------
T ss_pred eCCHHHHHHHHHHHHHcCCCEEEecchhHHHHHhhhcC
Confidence 9999999999999999998876 577788888875
No 66
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.91 E-value=1.7e-23 Score=219.90 Aligned_cols=251 Identities=12% Similarity=0.047 Sum_probs=171.3
Q ss_pred HHHHHHHHHhCCCC-------------ccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhh
Q 011963 183 LNAIENAMRHDGVE-------------QDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEK 249 (474)
Q Consensus 183 ~~~i~~~l~~~g~~-------------~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~ 249 (474)
.+.+.+.|...|+. .+.++..++||.++++.++.++++++++||| +|||++|++++...
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~ai~~i~~~~~~ll~~~TG-sGKT~~~l~~i~~~------- 132 (472)
T 2fwr_A 61 YRDIIEYFESNGIEFVDNAADPIPTPYFDAEISLRDYQEKALERWLVDKRGCIVLPTG-SGKTHVAMAAINEL------- 132 (472)
T ss_dssp HHHHHHHHHHTTCCEEEESCCCCCCCCCCCCCCBCHHHHHHHHHHTTTTEEEEECCTT-SCHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHcCCCcccccccccCcccccCCCCcCHHHHHHHHHHHhcCCEEEEeCCC-CCHHHHHHHHHHHc-------
Confidence 44667777777764 1123456788999999999999999999999 99999999988742
Q ss_pred cCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcE-EEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCC
Q 011963 250 EGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIH-TVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDV 328 (474)
Q Consensus 250 ~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~-v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l 328 (474)
+.++|||+||++|+.|+++.+..+ ++. +..++|+.. . .++|+|+||++|...+..- .
T Consensus 133 ------~~~~Lvl~P~~~L~~Q~~~~~~~~---~~~~v~~~~g~~~---------~-~~~Ivv~T~~~l~~~~~~~---~ 190 (472)
T 2fwr_A 133 ------STPTLIVVPTLALAEQWKERLGIF---GEEYVGEFSGRIK---------E-LKPLTVSTYDSAYVNAEKL---G 190 (472)
T ss_dssp ------CSCEEEEESSHHHHHHHHHHGGGG---CGGGEEEBSSSCB---------C-CCSEEEEEHHHHHHTHHHH---T
T ss_pred ------CCCEEEEECCHHHHHHHHHHHHhC---CCcceEEECCCcC---------C-cCCEEEEEcHHHHHHHHHh---c
Confidence 448999999999999999998885 788 888888764 2 5799999999998766421 1
Q ss_pred CCcceEEeccccccCChhHHHHHHhhCCCCCcEEEEEccCCc-------------------cHHHHHHHhhcCCc-eEEE
Q 011963 329 SGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTY-------------------TSVPAVQNLLLGSI-NRLS 388 (474)
Q Consensus 329 ~~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~llfSAT~~~-------------------~v~~l~~~~l~~p~-~~v~ 388 (474)
.++.+|||||||++.+ ..+..++..++ .++++++|||... ...++...++..+. ..+.
T Consensus 191 ~~~~liIvDEaH~~~~-~~~~~~~~~~~-~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 268 (472)
T 2fwr_A 191 NRFMLLIFDEVHHLPA-ESYVQIAQMSI-APFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIF 268 (472)
T ss_dssp TTCSEEEEETGGGTTS-TTTHHHHHTCC-CSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEE
T ss_pred CCCCEEEEECCcCCCC-hHHHHHHHhcC-CCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEE
Confidence 4588999999999997 22334666654 5789999999973 23333333333321 0111
Q ss_pred ccCCcc-----------------------cccCCcEEEE---------------------EEcCCchhHHHHHHHHHHHH
Q 011963 389 LNQSVA-----------------------SQSACIIQSV---------------------NVCASDEEKILKGIQVLDHA 424 (474)
Q Consensus 389 v~~~~~-----------------------~~~~~i~q~~---------------------~~~~~~~~K~~~l~~lL~~l 424 (474)
+..... .....+.+.+ +.+. ...|...| ..+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l----~~~ 343 (472)
T 2fwr_A 269 VPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFN-SKNKIRKL----REI 343 (472)
T ss_dssp ECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHS-CSHHHHHH----HHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhc-ChHHHHHH----HHH
Confidence 110000 0000000000 0111 23455444 444
Q ss_pred hhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc---chHHHHHHHhhc
Q 011963 425 YGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS---TGSNCIVSHIKN 473 (474)
Q Consensus 425 l~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~---~~r~~~i~~Fk~ 473 (474)
+..+. +.++||||++...++.++..|....+... .+|+.+++.|++
T Consensus 344 l~~~~---~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~~~R~~~~~~F~~ 392 (472)
T 2fwr_A 344 LERHR---KDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRT 392 (472)
T ss_dssp HHHTS---SSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHHHH
T ss_pred HHhCC---CCcEEEEECCHHHHHHHHHHhCcceeeCCCCHHHHHHHHHHHhC
Confidence 44454 78999999999999999999964433332 678889999975
No 67
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.90 E-value=5.7e-23 Score=228.34 Aligned_cols=256 Identities=7% Similarity=-0.054 Sum_probs=176.2
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHHHhcC-CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEE
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKCYSSA-KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLL 260 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~~l~g-~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~al 260 (474)
+++.+.+.|...| ..|+++ |.++|+.++.+ ++++++|||| ||||+ ++|++...... ..+ .+.+++
T Consensus 79 l~~~~~~~l~~r~-~lP~~~-----q~~~i~~~l~~~~~vii~gpTG-SGKTt--llp~ll~~~~~--~~~---~g~~il 144 (773)
T 2xau_A 79 FTPKYVDILKIRR-ELPVHA-----QRDEFLKLYQNNQIMVFVGETG-SGKTT--QIPQFVLFDEM--PHL---ENTQVA 144 (773)
T ss_dssp CCHHHHHHHHHHT-TSGGGG-----GHHHHHHHHHHCSEEEEECCTT-SSHHH--HHHHHHHHHHC--GGG---GTCEEE
T ss_pred CCHHHHHHHHHhh-cCChHH-----HHHHHHHHHhCCCeEEEECCCC-CCHHH--HHHHHHHHhcc--ccC---CCceEE
Confidence 7888889999888 788888 99999998865 5799999999 99998 67877222211 111 266899
Q ss_pred EEeccHHHHHHHHHHHHhc-c-cCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecc
Q 011963 261 FLVSSQEKAAKVRSVCKPL-K-AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDR 338 (474)
Q Consensus 261 il~PtreLa~Qi~~~~~~l-~-~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDE 338 (474)
|++|+|+||.|+...+... . ..+..++.-..... .... +.+|+|+|||+|+.++... ..+.++++|||||
T Consensus 145 vl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~-~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDE 216 (773)
T 2xau_A 145 CTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSN-KTILKYMTDGMLLREAMED-HDLSRYSCIILDE 216 (773)
T ss_dssp EEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCT-TCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECS
T ss_pred ecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCC-CCCEEEECHHHHHHHHhhC-ccccCCCEEEecC
Confidence 9999999999998766543 1 11322322111100 0112 6899999999999877654 4589999999999
Q ss_pred ccc-cCC----hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhH
Q 011963 339 LDS-LSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEK 413 (474)
Q Consensus 339 ad~-ll~----~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K 413 (474)
+|. +++ ...+..|+... ++.|+++||||++. ..++ .++.++. .+.+.... ..+.++|..++. .+.
T Consensus 217 ah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~--~~l~-~~~~~~~-vi~v~gr~----~pv~~~~~~~~~-~~~ 286 (773)
T 2xau_A 217 AHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDA--EKFQ-RYFNDAP-LLAVPGRT----YPVELYYTPEFQ-RDY 286 (773)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC--HHHH-HHTTSCC-EEECCCCC----CCEEEECCSSCC-SCH
T ss_pred ccccccchHHHHHHHHHHHHhC-CCceEEEEeccccH--HHHH-HHhcCCC-cccccCcc----cceEEEEecCCc-hhH
Confidence 995 776 34455555444 47899999999964 4444 4555444 45554331 246776666653 344
Q ss_pred HHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhh-----------CCCccc--------chHHHHHHHhh
Q 011963 414 ILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKC-----------KGYSIS--------TGSNCIVSHIK 472 (474)
Q Consensus 414 ~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~-----------~gi~v~--------~~r~~~i~~Fk 472 (474)
....+..+..+..... .+++||||+++.+++.++..|.. .|+.+. .+|..+++.|+
T Consensus 287 ~~~~l~~l~~~~~~~~---~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~ 361 (773)
T 2xau_A 287 LDSAIRTVLQIHATEE---AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAP 361 (773)
T ss_dssp HHHHHHHHHHHHHHSC---SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCC
T ss_pred HHHHHHHHHHHHHhcC---CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcc
Confidence 4444455555554444 68999999999999999999985 455554 45556676665
No 68
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.89 E-value=4.8e-23 Score=214.87 Aligned_cols=208 Identities=9% Similarity=0.042 Sum_probs=140.1
Q ss_pred cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCH
Q 011963 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAI 295 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~ 295 (474)
.|+|+|++|||| ||||++|++|+++.+.. .++++|||+||++||.|++..+. ++.+..+.|+...
T Consensus 1 kg~~~lv~a~TG-sGKT~~~l~~~l~~~~~---------~g~~~lvl~Pt~~La~Q~~~~~~-----~~~v~~~~~~~~~ 65 (431)
T 2v6i_A 1 KRELTVLDLHPG-AGKTRRVLPQLVREAVK---------KRLRTVILAPTRVVASEMYEALR-----GEPIRYMTPAVQS 65 (431)
T ss_dssp -CCEEEEECCTT-SCTTTTHHHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHTT-----TSCEEEC------
T ss_pred CCCEEEEEcCCC-CCHHHHHHHHHHHHHHh---------CCCCEEEECcHHHHHHHHHHHhC-----CCeEEEEecCccc
Confidence 378999999999 99999999999977764 36799999999999999998765 4455544444221
Q ss_pred HHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC--hhHHHHHHhhC-CCCCcEEEEEccCCccH
Q 011963 296 DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GDTLSLIRQSI-SGKPHTVVFNDCLTYTS 372 (474)
Q Consensus 296 ~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~--~~~l~~Il~~l-~~~~q~llfSAT~~~~v 372 (474)
....+--+.+.|.+.+...+.. ...+.++.+|||||||++.. ...+..+.... +.++|+++||||+++.+
T Consensus 66 ------~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~ 138 (431)
T 2v6i_A 66 ------ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTT 138 (431)
T ss_dssp ---------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCC
T ss_pred ------cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcch
Confidence 1111346778899988766555 56689999999999999832 23333333332 56899999999999854
Q ss_pred HHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHH
Q 011963 373 VPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVST 452 (474)
Q Consensus 373 ~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~ 452 (474)
..+... ..|. +.+.. .++. .+...++..| ... .+++||||+++..|+.++..
T Consensus 139 ~~~~~~--~~~i--~~~~~--------------~~~~--~~~~~~~~~l----~~~----~~~~lVF~~~~~~~~~l~~~ 190 (431)
T 2v6i_A 139 EAFPPS--NSPI--IDEET--------------RIPD--KAWNSGYEWI----TEF----DGRTVWFVHSIKQGAEIGTC 190 (431)
T ss_dssp CSSCCC--SSCC--EEEEC--------------CCCS--SCCSSCCHHH----HSC----SSCEEEECSSHHHHHHHHHH
T ss_pred hhhcCC--CCce--eeccc--------------cCCH--HHHHHHHHHH----HcC----CCCEEEEeCCHHHHHHHHHH
Confidence 322111 1121 11110 0111 1111111222 222 46899999999999999999
Q ss_pred HhhCCCccc----chHHHHHHHhhc
Q 011963 453 LKCKGYSIS----TGSNCIVSHIKN 473 (474)
Q Consensus 453 L~~~gi~v~----~~r~~~i~~Fk~ 473 (474)
|+..|+++. .+|+.++++|++
T Consensus 191 L~~~~~~v~~lhg~~r~~~~~~f~~ 215 (431)
T 2v6i_A 191 LQKAGKKVLYLNRKTFESEYPKCKS 215 (431)
T ss_dssp HHHTTCCEEEESTTTHHHHTTHHHH
T ss_pred HHHcCCeEEEeCCccHHHHHHhhcC
Confidence 999998876 577888999974
No 69
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.89 E-value=7.6e-24 Score=222.61 Aligned_cols=211 Identities=11% Similarity=0.007 Sum_probs=139.2
Q ss_pred HHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEe
Q 011963 211 WKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLH 290 (474)
Q Consensus 211 i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~ 290 (474)
...+..|+++|++|||| ||||++|++|+++.+.. .++++|||+|||+||.|+++.+..+ .+....
T Consensus 15 ~~~l~~~~~vlv~a~TG-sGKT~~~~l~il~~~~~---------~~~~~lvl~Ptr~La~Q~~~~l~g~-----~v~~~~ 79 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPG-SGKTRKILPQIIKDAIQ---------QRLRTAVLAPTRVVAAEMAEALRGL-----PVRYQT 79 (459)
T ss_dssp CGGGSTTCEEEECCCTT-SCTTTTHHHHHHHHHHH---------TTCCEEEEECSHHHHHHHHHHTTTS-----CEEECC
T ss_pred HHHHhcCCcEEEECCCC-CCHHHHHHHHHHHHHHh---------CCCcEEEECchHHHHHHHHHHhcCc-----eEeEEe
Confidence 34567788999999999 99999999999998875 3679999999999999999987633 222222
Q ss_pred cCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-----hhHHHHHHhhCCCCCcEEEEE
Q 011963 291 PGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-----GDTLSLIRQSISGKPHTVVFN 365 (474)
Q Consensus 291 gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~-----~~~l~~Il~~l~~~~q~llfS 365 (474)
+..... ...+--+.++|.+.+...+... ..++++++|||||||++.. ...+..+. .+.++|+++||
T Consensus 80 ~~~~~~------~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~--~~~~~~~il~S 150 (459)
T 2z83_A 80 SAVQRE------HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV--ELGEAAAIFMT 150 (459)
T ss_dssp --------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH--HTTSCEEEEEC
T ss_pred cccccC------CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh--ccCCccEEEEE
Confidence 211100 1114457788999887665543 5688999999999998522 22222222 13679999999
Q ss_pred ccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchh
Q 011963 366 DCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSK 445 (474)
Q Consensus 366 AT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~ 445 (474)
||++..+..+... ..|+ +.+... +........+ .+|... .+++||||+|+..
T Consensus 151 AT~~~~~~~~~~~--~~pi--~~~~~~------------~~~~~~~~~~----~~l~~~--------~~~~LVF~~s~~~ 202 (459)
T 2z83_A 151 ATPPGTTDPFPDS--NAPI--HDLQDE------------IPDRAWSSGY----EWITEY--------AGKTVWFVASVKM 202 (459)
T ss_dssp SSCTTCCCSSCCC--SSCE--EEEECC------------CCSSCCSSCC----HHHHHC--------CSCEEEECSCHHH
T ss_pred cCCCcchhhhccC--CCCe--EEeccc------------CCcchhHHHH----HHHHhc--------CCCEEEEeCChHH
Confidence 9999865433221 2232 111110 0000011112 333331 5799999999999
Q ss_pred HHHHHHHHhhCCCccc----chHHHHHHHhhc
Q 011963 446 FQNLVSTLKCKGYSIS----TGSNCIVSHIKN 473 (474)
Q Consensus 446 a~~l~~~L~~~gi~v~----~~r~~~i~~Fk~ 473 (474)
|+.++..|+..|+++. .+|+.+++.|++
T Consensus 203 ~~~l~~~L~~~g~~v~~lh~~~R~~~~~~f~~ 234 (459)
T 2z83_A 203 GNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKN 234 (459)
T ss_dssp HHHHHHHHHHTTCCEEEESTTCCCCCGGGSSS
T ss_pred HHHHHHHHHhcCCcEEecCHHHHHHHHhhccC
Confidence 9999999999999876 455566777754
No 70
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.86 E-value=4.5e-22 Score=195.56 Aligned_cols=153 Identities=10% Similarity=0.006 Sum_probs=124.0
Q ss_pred hhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhccc-CC
Q 011963 205 SWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKA-FG 283 (474)
Q Consensus 205 ~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~-~~ 283 (474)
+||.++++.++.+++.++++||| +|||+++++++...+.. ...++|||+||++|+.|+++.+..+.. .+
T Consensus 116 ~~Q~~ai~~~l~~~~~ll~~~tG-sGKT~~~~~~~~~~~~~---------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 116 WYQKDAVFEGLVNRRRILNLPTS-AGRSLIQALLARYYLEN---------YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp HHHHHHHHHHHHHSEEEECCCTT-SCHHHHHHHHHHHHHHH---------CSSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred HHHHHHHHHHHhcCCeEEEcCCC-CCcHHHHHHHHHHHHHc---------CCCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 44999999999999999999999 99999999888776543 234899999999999999999999843 36
Q ss_pred cEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhCCCCCcEEE
Q 011963 284 IHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVV 363 (474)
Q Consensus 284 i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~ll 363 (474)
+.++.++||..... .... +.+|+|+||++|... ....+.++.+|||||||++. ...+..++..+...+++++
T Consensus 186 ~~~~~~~~~~~~~~---~~~~-~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~-~~~~~~il~~~~~~~~~l~ 257 (282)
T 1rif_A 186 AMIKKIGGGASKDD---KYKN-DAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT-GKSISSIISGLNNCMFKFG 257 (282)
T ss_dssp GGEEECSTTCSSTT---CCCT-TCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC-HHHHHHHTTTCTTCCEEEE
T ss_pred ceEEEEeCCCcchh---hhcc-CCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCC-cccHHHHHHHhhcCCeEEE
Confidence 78888888865432 1112 689999999987543 33456789999999999998 5578888888877899999
Q ss_pred EEccCCccHHHH
Q 011963 364 FNDCLTYTSVPA 375 (474)
Q Consensus 364 fSAT~~~~v~~l 375 (474)
||||+++....+
T Consensus 258 lSATp~~~~~~~ 269 (282)
T 1rif_A 258 LSGSLRDGKANI 269 (282)
T ss_dssp ECSSCCTTSTTH
T ss_pred EeCCCCCcchHH
Confidence 999998764433
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.85 E-value=5.3e-21 Score=217.14 Aligned_cols=156 Identities=9% Similarity=0.036 Sum_probs=121.5
Q ss_pred CCCchhhHHHHHHHhc--------------CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccH
Q 011963 201 LFVNSWGIEFWKCYSS--------------AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQ 266 (474)
Q Consensus 201 i~~~~~Q~~~i~~~l~--------------g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Ptr 266 (474)
+..++||..|++.++. +++.+++++|| ||||+++ ++++..+... ....++|||+|++
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TG-SGKT~t~-~~l~~ll~~~-------~~~~rvLvlvpr~ 340 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTG-SGKTLTS-FKAARLATEL-------DFIDKVFFVVDRK 340 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTT-SSHHHHH-HHHHHHHTTC-------TTCCEEEEEECGG
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCC-CCHHHHH-HHHHHHHHhc-------CCCceEEEEeCcH
Confidence 3445669999999876 36899999999 9999998 7777443221 1346999999999
Q ss_pred HHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCC--CCCCCcceEEeccccccCC
Q 011963 267 EKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKA--IDVSGVSLLVVDRLDSLSK 344 (474)
Q Consensus 267 eLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~--~~l~~l~~lViDEad~ll~ 344 (474)
+|+.|+.+.+..+... .+.|+.+...+...+...+++|+|+||++|..++.... ..++...+|||||||++..
T Consensus 341 eL~~Q~~~~f~~f~~~-----~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~ 415 (1038)
T 2w00_A 341 DLDYQTMKEYQRFSPD-----SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF 415 (1038)
T ss_dssp GCCHHHHHHHHTTSTT-----CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH
T ss_pred HHHHHHHHHHHHhccc-----ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc
Confidence 9999999999988432 23566666666677754479999999999999887532 2466789999999999876
Q ss_pred hhHHHHHHhhCCCCCcEEEEEccCCcc
Q 011963 345 GDTLSLIRQSISGKPHTVVFNDCLTYT 371 (474)
Q Consensus 345 ~~~l~~Il~~l~~~~q~llfSAT~~~~ 371 (474)
...+..|+..+| +.++++||||....
T Consensus 416 ~~~~~~I~~~~p-~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 416 GEAQKNLKKKFK-RYYQFGFTGTPIFP 441 (1038)
T ss_dssp HHHHHHHHHHCS-SEEEEEEESSCCCS
T ss_pred hHHHHHHHHhCC-cccEEEEeCCcccc
Confidence 445677888876 47999999998754
No 72
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.80 E-value=4e-20 Score=201.92 Aligned_cols=212 Identities=7% Similarity=-0.015 Sum_probs=143.4
Q ss_pred hHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEE
Q 011963 207 GIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHT 286 (474)
Q Consensus 207 Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v 286 (474)
|.......+.|+|++++|||| ||||+ +++..+... ..++|++|||+||.|+++.+..+ |+.+
T Consensus 145 ~~~p~ar~l~rk~vlv~apTG-SGKT~----~al~~l~~~----------~~gl~l~PtR~LA~Qi~~~l~~~---g~~v 206 (677)
T 3rc3_A 145 NWYPDARAMQRKIIFHSGPTN-SGKTY----HAIQKYFSA----------KSGVYCGPLKLLAHEIFEKSNAA---GVPC 206 (677)
T ss_dssp GGCHHHHTSCCEEEEEECCTT-SSHHH----HHHHHHHHS----------SSEEEEESSHHHHHHHHHHHHHT---TCCE
T ss_pred hhCHHHHhcCCCEEEEEcCCC-CCHHH----HHHHHHHhc----------CCeEEEeCHHHHHHHHHHHHHhc---CCcE
Confidence 444445668999999999999 99998 555555542 24599999999999999998776 7889
Q ss_pred EEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC---hhHHHHHHhhCC-CCCcEE
Q 011963 287 VSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK---GDTLSLIRQSIS-GKPHTV 362 (474)
Q Consensus 287 ~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~---~~~l~~Il~~l~-~~~q~l 362 (474)
..++|+....- ..-.. ..+++++|++.+. ....+++|||||||+|++ ...+..++..++ ...|++
T Consensus 207 ~lltG~~~~iv--~TpGr-~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il 275 (677)
T 3rc3_A 207 DLVTGEERVTV--QPNGK-QASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLC 275 (677)
T ss_dssp EEECSSCEECC--STTCC-CCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEE
T ss_pred EEEECCeeEEe--cCCCc-ccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEE
Confidence 99998865300 00000 2567777775431 246789999999999998 667788888887 788999
Q ss_pred EEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEcc
Q 011963 363 VFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGK 442 (474)
Q Consensus 363 lfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s 442 (474)
++|||.+. +..++... ..+. .|..... .. .+. .... .+ ..+..+ ....||||+|
T Consensus 276 ~~SAT~~~-i~~l~~~~-~~~~-~v~~~~r--~~--~l~----~~~~---~l----~~l~~~--------~~g~iIf~~s 329 (677)
T 3rc3_A 276 GEPAAIDL-VMELMYTT-GEEV-EVRDYKR--LT--PIS----VLDH---AL----ESLDNL--------RPGDCIVCFS 329 (677)
T ss_dssp ECGGGHHH-HHHHHHHH-TCCE-EEEECCC--SS--CEE----ECSS---CC----CSGGGC--------CTTEEEECSS
T ss_pred eccchHHH-HHHHHHhc-CCce-EEEEeee--cc--hHH----HHHH---HH----HHHHhc--------CCCCEEEEcC
Confidence 99999533 44444333 3333 2221111 00 010 1110 00 011111 3456999999
Q ss_pred chhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 443 DSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 443 ~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
+++++.++..|...|+.+. .+|...++.|++
T Consensus 330 ~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~ 368 (677)
T 3rc3_A 330 KNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFND 368 (677)
T ss_dssp HHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHc
Confidence 9999999999999998876 577789999985
No 73
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.79 E-value=3.4e-18 Score=180.81 Aligned_cols=147 Identities=8% Similarity=0.035 Sum_probs=107.5
Q ss_pred CchhhHHHHHHH----hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh
Q 011963 203 VNSWGIEFWKCY----SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (474)
Q Consensus 203 ~~~~Q~~~i~~~----l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 278 (474)
..+||.++++.+ ..|+++|++++|| +|||+.++ +++..+.... ....+|||+|+ .|+.|+.+++..
T Consensus 38 L~~~Q~~~v~~l~~~~~~~~~~ilad~~G-lGKT~~ai-~~i~~~~~~~-------~~~~~LIv~P~-~l~~qw~~e~~~ 107 (500)
T 1z63_A 38 LRPYQIKGFSWMRFMNKLGFGICLADDMG-LGKTLQTI-AVFSDAKKEN-------ELTPSLVICPL-SVLKNWEEELSK 107 (500)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCEEECCCTT-SCHHHHHH-HHHHHHHHTT-------CCSSEEEEECS-TTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCCCEEEEeCCC-CcHHHHHH-HHHHHHHhcC-------CCCCEEEEccH-HHHHHHHHHHHH
Confidence 345699999887 4578999999999 99999974 4554444321 34579999995 588999999998
Q ss_pred cccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-hhHHHHHHhhCCC
Q 011963 279 LKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLIRQSISG 357 (474)
Q Consensus 279 l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~-~~~l~~Il~~l~~ 357 (474)
+.. ++++..++|+... .... .++|+|+||++|..... +....+.+|||||||++.. .......+..++
T Consensus 108 ~~~-~~~v~~~~g~~~~-----~~~~-~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~- 176 (500)
T 1z63_A 108 FAP-HLRFAVFHEDRSK-----IKLE-DYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELK- 176 (500)
T ss_dssp HCT-TSCEEECSSSTTS-----CCGG-GSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSC-
T ss_pred HCC-CceEEEEecCchh-----cccc-CCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHhHHHHHHHHhhc-
Confidence 843 5677777776531 1122 58999999999975443 2334578999999999987 555556666664
Q ss_pred CCcEEEEEccCCc
Q 011963 358 KPHTVVFNDCLTY 370 (474)
Q Consensus 358 ~~q~llfSAT~~~ 370 (474)
..+.+++|||...
T Consensus 177 ~~~~l~LTaTP~~ 189 (500)
T 1z63_A 177 SKYRIALTGTPIE 189 (500)
T ss_dssp EEEEEEECSSCST
T ss_pred cCcEEEEecCCCC
Confidence 3678999999744
No 74
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.79 E-value=2.3e-18 Score=165.18 Aligned_cols=155 Identities=13% Similarity=0.053 Sum_probs=119.5
Q ss_pred HHHHHHHhCCCCc-------------cccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcC
Q 011963 185 AIENAMRHDGVEQ-------------DNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEG 251 (474)
Q Consensus 185 ~i~~~l~~~g~~~-------------ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~ 251 (474)
.+.+.++..||.- ...+..++||.++++.++.++++++++||| +|||++++.++...
T Consensus 63 ~l~~~l~~~~~~~~~~~~~~~~~p~~~~~~~l~~~Q~~ai~~~~~~~~~ll~~~tG-~GKT~~a~~~~~~~--------- 132 (237)
T 2fz4_A 63 DIIEYFESNGIEFVDNAADPIPTPYFDAEISLRDYQEKALERWLVDKRGCIVLPTG-SGKTHVAMAAINEL--------- 132 (237)
T ss_dssp HHHHHHHHTTCCEEEESCCCCCCCCCCCCCCCCHHHHHHHHHHTTTSEEEEEESSS-TTHHHHHHHHHHHS---------
T ss_pred HHHHHHHHcCCCccccccccCCCccccCCCCcCHHHHHHHHHHHhCCCEEEEeCCC-CCHHHHHHHHHHHc---------
Confidence 4556677777641 112355677999999999999999999999 99999998877631
Q ss_pred CCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcE-EEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCC
Q 011963 252 FSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIH-TVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSG 330 (474)
Q Consensus 252 ~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~-v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~ 330 (474)
+.++||++||++|+.|+++.+..+ ++. +..+.|+.. . ..+|+|+||+.+...+.. ....
T Consensus 133 ----~~~~liv~P~~~L~~q~~~~~~~~---~~~~v~~~~g~~~---------~-~~~i~v~T~~~l~~~~~~---~~~~ 192 (237)
T 2fz4_A 133 ----STPTLIVVPTLALAEQWKERLGIF---GEEYVGEFSGRIK---------E-LKPLTVSTYDSAYVNAEK---LGNR 192 (237)
T ss_dssp ----CSCEEEEESSHHHHHHHHHHHGGG---CGGGEEEESSSCB---------C-CCSEEEEEHHHHHHTHHH---HTTT
T ss_pred ----CCCEEEEeCCHHHHHHHHHHHHhC---CCCeEEEEeCCCC---------C-cCCEEEEeHHHHHhhHHH---hccc
Confidence 447999999999999999998885 777 777777754 2 579999999998876542 1245
Q ss_pred cceEEeccccccCChhHHHHHHhhCCCCCcEEEEEccCCcc
Q 011963 331 VSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVFNDCLTYT 371 (474)
Q Consensus 331 l~~lViDEad~ll~~~~l~~Il~~l~~~~q~llfSAT~~~~ 371 (474)
+.+|||||||++.+ ..+..++..++ ..++++||||.+..
T Consensus 193 ~~llIiDEaH~l~~-~~~~~i~~~~~-~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 193 FMLLIFDEVHHLPA-ESYVQIAQMSI-APFRLGLTATFERE 231 (237)
T ss_dssp CSEEEEECSSCCCT-TTHHHHHHTCC-CSEEEEEEESCC--
T ss_pred CCEEEEECCccCCC-hHHHHHHHhcc-CCEEEEEecCCCCC
Confidence 88999999999986 33455666665 57899999998763
No 75
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.69 E-value=1.8e-16 Score=180.32 Aligned_cols=157 Identities=8% Similarity=-0.028 Sum_probs=106.2
Q ss_pred cCCCchhhHHHHHHHhcC--CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHH
Q 011963 200 PLFVNSWGIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCK 277 (474)
Q Consensus 200 pi~~~~~Q~~~i~~~l~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~ 277 (474)
++...+||.+++..++.. ..+|++.+|| +|||+.++..+...+... ...++|||||+ .|+.|....+.
T Consensus 151 ~~~LrpyQ~eav~~~l~~~~~~~LLad~tG-lGKTi~Ai~~i~~l~~~g--------~~~rvLIVvP~-sLl~Qw~~E~~ 220 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRRHAPRVLLADEVG-LGKTIEAGMILHQQLLSG--------AAERVLIIVPE-TLQHQWLVEML 220 (968)
T ss_dssp SSCCCHHHHHHHHHHHHSSSCEEEECCCTT-SCHHHHHHHHHHHHHHTS--------SCCCEEEECCT-TTHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHhcCCCEEEECCCC-CcHHHHHHHHHHHHHHhC--------CCCeEEEEeCH-HHHHHHHHHHH
Confidence 456678899999998874 4899999999 999999977666554432 23479999999 99999998886
Q ss_pred hcccCCcEEEEEecCCCHHHHHHHH--hcCCCcEEEEChHHHHHHHHc-CCCCCCCcceEEeccccccCC----hhH-HH
Q 011963 278 PLKAFGIHTVSLHPGAAIDHQITGL--RSCEPEFLVSTPERLLKLVSL-KAIDVSGVSLLVVDRLDSLSK----GDT-LS 349 (474)
Q Consensus 278 ~l~~~~i~v~~~~gg~~~~~q~~~l--~~~~~~IlV~TP~rL~~ll~~-~~~~l~~l~~lViDEad~ll~----~~~-l~ 349 (474)
..- ++.+..+.|+.... ..... .-...+|+|+|++.|...... ..+...++.+|||||||++.. ... +.
T Consensus 221 ~~f--~l~v~v~~~~~~~~-~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~ 297 (968)
T 3dmq_A 221 RRF--NLRFALFDDERYAE-AQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQ 297 (968)
T ss_dssp HHS--CCCCEECCHHHHHH-HHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHH
T ss_pred HHh--CCCEEEEccchhhh-hhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHH
Confidence 542 56665555543222 11111 011469999999988532111 113345688999999999986 111 33
Q ss_pred HHHhhCCCCCcEEEEEccCC
Q 011963 350 LIRQSISGKPHTVVFNDCLT 369 (474)
Q Consensus 350 ~Il~~l~~~~q~llfSAT~~ 369 (474)
.+.......++++++|||.-
T Consensus 298 ~l~~L~~~~~~~L~LTATPi 317 (968)
T 3dmq_A 298 AIEQLAEHVPGVLLLTATPE 317 (968)
T ss_dssp HHHHHHTTCSSEEESCSSCS
T ss_pred HHHHHhhcCCcEEEEEcCCc
Confidence 33333334567999999974
No 76
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=7.5e-16 Score=172.22 Aligned_cols=155 Identities=9% Similarity=0.034 Sum_probs=112.2
Q ss_pred CCCchhhHHHHHHHh----cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHH
Q 011963 201 LFVNSWGIEFWKCYS----SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC 276 (474)
Q Consensus 201 i~~~~~Q~~~i~~~l----~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~ 276 (474)
.+.++||.+++..++ .|++.|++.+|| +|||+..+..+...+.... ....+|||+| ..|+.|..+++
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademG-lGKT~~ai~~i~~l~~~~~-------~~~~~LIV~P-~sll~qW~~E~ 305 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMG-LGKTVQTVAFISWLIFARR-------QNGPHIIVVP-LSTMPAWLDTF 305 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTT-SSTTHHHHHHHHHHHHHHS-------CCSCEEEECC-TTTHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCC-cchHHHHHHHHHHHHHhcC-------CCCCEEEEEC-chHHHHHHHHH
Confidence 467789999998776 789999999999 9999987655544333321 2346799999 67889999999
Q ss_pred HhcccCCcEEEEEecCCCHHHHHHHH-----------hcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-
Q 011963 277 KPLKAFGIHTVSLHPGAAIDHQITGL-----------RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK- 344 (474)
Q Consensus 277 ~~l~~~~i~v~~~~gg~~~~~q~~~l-----------~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~- 344 (474)
..+.+ ++++++++|+.......... ....++|+|+|++.+...... +..-...+|||||||++-.
T Consensus 306 ~~~~p-~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~ 382 (800)
T 3mwy_W 306 EKWAP-DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNA 382 (800)
T ss_dssp HHHST-TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCS
T ss_pred HHHCC-CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCc
Confidence 88743 67888888776655443332 223589999999999764332 1122467999999999977
Q ss_pred hhHHHHHHhhCCCCCcEEEEEccC
Q 011963 345 GDTLSLIRQSISGKPHTVVFNDCL 368 (474)
Q Consensus 345 ~~~l~~Il~~l~~~~q~llfSAT~ 368 (474)
...+...+..+. ....+++|||.
T Consensus 383 ~s~~~~~l~~l~-~~~rl~LTgTP 405 (800)
T 3mwy_W 383 ESSLYESLNSFK-VANRMLITGTP 405 (800)
T ss_dssp SSHHHHHHTTSE-EEEEEEECSCC
T ss_pred hhHHHHHHHHhh-hccEEEeeCCc
Confidence 566666666664 34578899997
No 77
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.68 E-value=1.3e-16 Score=171.33 Aligned_cols=125 Identities=11% Similarity=0.075 Sum_probs=98.1
Q ss_pred hhhHHHHHH----HhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-
Q 011963 205 SWGIEFWKC----YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL- 279 (474)
Q Consensus 205 ~~Q~~~i~~----~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l- 279 (474)
++|.+++.. +..|+|+++.|||| ||||++|++|++. .++++||++||++|+.|+.+.+..+
T Consensus 6 ~~Q~~~~~~v~~~l~~~~~~~~~a~TG-tGKT~~~l~p~l~-------------~~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 6 DWQEKLKDKVIEGLRNNFLVALNAPTG-SGKTLFSLLVSLE-------------VKPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECCTT-SSHHHHHHHHHHH-------------HCSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCCcEEEECCCC-ccHHHHHHHHHHh-------------CCCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 449987764 56799999999999 9999999999996 1569999999999999999999998
Q ss_pred ccCCcEEEEEecCCCH---------------------------------HHHH------------------HHHhcCCCc
Q 011963 280 KAFGIHTVSLHPGAAI---------------------------------DHQI------------------TGLRSCEPE 308 (474)
Q Consensus 280 ~~~~i~v~~~~gg~~~---------------------------------~~q~------------------~~l~~~~~~ 308 (474)
...+++++.+.|+.+. ..+. +.+.. .+|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~-~ad 150 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLY-KAD 150 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGG-GCS
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhh-cCC
Confidence 4448999888774321 1222 22233 689
Q ss_pred EEEEChHHHHHHHHcCCCCC-CCcceEEeccccccCC
Q 011963 309 FLVSTPERLLKLVSLKAIDV-SGVSLLVVDRLDSLSK 344 (474)
Q Consensus 309 IlV~TP~rL~~ll~~~~~~l-~~l~~lViDEad~ll~ 344 (474)
|||+|+++|++.+....+.+ ....+|||||||.|.+
T Consensus 151 IVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 151 VIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred EEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99999999998765443433 4678999999999986
No 78
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.66 E-value=4.7e-15 Score=159.63 Aligned_cols=235 Identities=12% Similarity=0.009 Sum_probs=165.5
Q ss_pred CCCccccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHH
Q 011963 194 GVEQDNPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (474)
Q Consensus 194 g~~~ptpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~ 273 (474)
|.. |+++ |....-.+..|+ |+.+.|| +||||++.+|++-..+. |..+.||+||++||.|-.
T Consensus 73 g~r-~~dv-----Qligg~~L~~G~--iaEM~TG-EGKTLva~lp~~lnAL~----------G~~vhVvT~ndyLA~rda 133 (822)
T 3jux_A 73 GMR-PFDV-----QVMGGIALHEGK--VAEMKTG-EGKTLAATMPIYLNALI----------GKGVHLVTVNDYLARRDA 133 (822)
T ss_dssp SCC-CCHH-----HHHHHHHHHTTC--EEECCTT-SCHHHHTHHHHHHHHTT----------SSCEEEEESSHHHHHHHH
T ss_pred CCC-CcHH-----HHHHHHHHhCCC--hhhccCC-CCccHHHHHHHHHHHhc----------CCceEEEeccHHHHHhHH
Confidence 554 6667 999999999998 8999999 99999999999854443 668999999999999999
Q ss_pred HHHHhc-ccCCcEEEEEecC--------------------------------------------------CCHHHHHHHH
Q 011963 274 SVCKPL-KAFGIHTVSLHPG--------------------------------------------------AAIDHQITGL 302 (474)
Q Consensus 274 ~~~~~l-~~~~i~v~~~~gg--------------------------------------------------~~~~~q~~~l 302 (474)
.++..+ ..+|++|++++.. .+.......
T Consensus 134 e~m~~l~~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~a- 212 (822)
T 3jux_A 134 LWMGPVYLFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEA- 212 (822)
T ss_dssp HHHHHHHHHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHH-
T ss_pred HHHHHHHHHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHH-
Confidence 999998 6679999999872 221111111
Q ss_pred hcCCCcEEEEChHHHH-HHHHcC------CCCCCCcceEEeccccccC-C------------------hhHHHHHHhhCC
Q 011963 303 RSCEPEFLVSTPERLL-KLVSLK------AIDVSGVSLLVVDRLDSLS-K------------------GDTLSLIRQSIS 356 (474)
Q Consensus 303 ~~~~~~IlV~TP~rL~-~ll~~~------~~~l~~l~~lViDEad~ll-~------------------~~~l~~Il~~l~ 356 (474)
- .|||..+|..-+- |+|+-+ ......+.|.||||+|.+| | ...+..+...+.
T Consensus 213 Y--~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~ 290 (822)
T 3jux_A 213 Y--LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFV 290 (822)
T ss_dssp H--HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSC
T ss_pred h--cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcC
Confidence 1 4799999998764 444432 2335678999999999875 2 011111111110
Q ss_pred --------------------------------------------------------C-----------------------
Q 011963 357 --------------------------------------------------------G----------------------- 357 (474)
Q Consensus 357 --------------------------------------------------------~----------------------- 357 (474)
.
T Consensus 291 ~~~dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~ 370 (822)
T 3jux_A 291 KDKDFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLP 370 (822)
T ss_dssp BTTTEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCC
T ss_pred cCCcEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCC
Confidence 0
Q ss_pred --------------------------------------CCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCC
Q 011963 358 --------------------------------------KPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSAC 399 (474)
Q Consensus 358 --------------------------------------~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~ 399 (474)
-..+.++|+|...+..++...|- -. .+.+.. +.+...
T Consensus 371 grr~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~-l~--vv~IPt--nkp~~R 445 (822)
T 3jux_A 371 GRRYSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYG-ME--VVVIPT--HKPMIR 445 (822)
T ss_dssp SCCCGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSC-CC--EEECCC--SSCCCC
T ss_pred CCcCchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhC-Ce--EEEECC--CCCcce
Confidence 13468889999887777766663 22 344443 233344
Q ss_pred cEEE-EEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc
Q 011963 400 IIQS-VNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS 461 (474)
Q Consensus 400 i~q~-~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~ 461 (474)
+.+. ++++ +...|...+...+...... +.|+||||+|++.++.|+..|...|+++.
T Consensus 446 ~d~~d~vy~-t~~eK~~al~~~I~~~~~~-----gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~ 502 (822)
T 3jux_A 446 KDHDDLVFR-TQKEKYEKIVEEIEKRYKK-----GQPVLVGTTSIEKSELLSSMLKKKGIPHQ 502 (822)
T ss_dssp EECCCEEES-SHHHHHHHHHHHHHHHHHH-----TCCEEEEESSHHHHHHHHHHHHTTTCCCE
T ss_pred eecCcEEEe-cHHHHHHHHHHHHHHHhhC-----CCCEEEEECCHHHHHHHHHHHHHCCCCEE
Confidence 4443 4555 4677887777777665333 56999999999999999999999999986
No 79
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.66 E-value=1.4e-14 Score=158.18 Aligned_cols=158 Identities=9% Similarity=0.019 Sum_probs=108.8
Q ss_pred CchhhHHHHHHHh---------cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHH
Q 011963 203 VNSWGIEFWKCYS---------SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (474)
Q Consensus 203 ~~~~Q~~~i~~~l---------~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~ 273 (474)
.++||.+++..+. .++..|++.+|| +|||+..+..+...+...+.. . .....+|||+|+ .|+.|..
T Consensus 56 LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mG-lGKT~~~i~~i~~l~~~~~~~-~--p~~~~~LiV~P~-sll~qW~ 130 (644)
T 1z3i_X 56 LRPHQREGVKFLWDCVTGRRIENSYGCIMADEMG-LGKTLQCITLIWTLLKQSPDC-K--PEIDKVIVVSPS-SLVRNWY 130 (644)
T ss_dssp CCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTT-SCHHHHHHHHHHHHHHCCTTS-S--CSCSCEEEEECH-HHHHHHH
T ss_pred ccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCC-chHHHHHHHHHHHHHHhCccc-c--CCCCcEEEEecH-HHHHHHH
Confidence 3566999999874 456899999999 999999876665444332211 0 123468999997 8999999
Q ss_pred HHHHhcccCCcEEEEEecCCCHHH--HHHHH-hc----CCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC-h
Q 011963 274 SVCKPLKAFGIHTVSLHPGAAIDH--QITGL-RS----CEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-G 345 (474)
Q Consensus 274 ~~~~~l~~~~i~v~~~~gg~~~~~--q~~~l-~~----~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~-~ 345 (474)
+++..+.+..+.++.++||..... ..... .. ..++|+|+|++.+.... ..+......+||+||||++-. .
T Consensus 131 ~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~ 208 (644)
T 1z3i_X 131 NEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSD 208 (644)
T ss_dssp HHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTC
T ss_pred HHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChh
Confidence 999998444677778888754322 12222 11 13789999999987543 334445678999999999977 3
Q ss_pred hHHHHHHhhCCCCCcEEEEEccC
Q 011963 346 DTLSLIRQSISGKPHTVVFNDCL 368 (474)
Q Consensus 346 ~~l~~Il~~l~~~~q~llfSAT~ 368 (474)
......+..+. ....+++|||.
T Consensus 209 ~~~~~al~~l~-~~~rl~LTgTP 230 (644)
T 1z3i_X 209 NQTYLALNSMN-AQRRVLISGTP 230 (644)
T ss_dssp HHHHHHHHHHC-CSEEEEECSSC
T ss_pred hHHHHHHHhcc-cCcEEEEecCc
Confidence 34444444444 35789999996
No 80
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.57 E-value=2.3e-15 Score=161.15 Aligned_cols=128 Identities=15% Similarity=0.056 Sum_probs=88.6
Q ss_pred CCCCccccCCCchhhHHHHH----HHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHH
Q 011963 193 DGVEQDNPLFVNSWGIEFWK----CYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268 (474)
Q Consensus 193 ~g~~~ptpi~~~~~Q~~~i~----~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreL 268 (474)
.|| .|+|. |.+++. .+..|+++++.|||| ||||++|++|++.. +.++||++||++|
T Consensus 4 ~~~-~~r~~-----Q~~~~~~v~~~~~~~~~~~~~a~TG-tGKT~~~l~~~~~~-------------~~~~~~~~~t~~l 63 (540)
T 2vl7_A 4 LKL-QLRQW-----QAEKLGEAINALKHGKTLLLNAKPG-LGKTVFVEVLGMQL-------------KKKVLIFTRTHSQ 63 (540)
T ss_dssp ------CCH-----HHHHHHHHHHHHHTTCEEEEECCTT-SCHHHHHHHHHHHH-------------TCEEEEEESCHHH
T ss_pred CCC-CCCHH-----HHHHHHHHHHHHHcCCCEEEEcCCC-CcHHHHHHHHHHhC-------------CCcEEEEcCCHHH
Confidence 577 78888 999864 456899999999999 99999999998741 5699999999999
Q ss_pred HHHHHHHHHhcccCCcEEEEEecCCCH--------H------------------------HHH---------------HH
Q 011963 269 AAKVRSVCKPLKAFGIHTVSLHPGAAI--------D------------------------HQI---------------TG 301 (474)
Q Consensus 269 a~Qi~~~~~~l~~~~i~v~~~~gg~~~--------~------------------------~q~---------------~~ 301 (474)
+.|+.+.+..+ ++++..+.|.... . ..+ +.
T Consensus 64 ~~q~~~~~~~l---~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~ 140 (540)
T 2vl7_A 64 LDSIYKNAKLL---GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRA 140 (540)
T ss_dssp HHHHHHHHGGG---TCCEEEC---------------------------------------------------------CT
T ss_pred HHHHHHHHHhc---CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHH
Confidence 99999888775 5555555443210 0 000 11
Q ss_pred HhcCCCcEEEEChHHHHHHHHcCCC-------CCCCcceEEeccccccCC
Q 011963 302 LRSCEPEFLVSTPERLLKLVSLKAI-------DVSGVSLLVVDRLDSLSK 344 (474)
Q Consensus 302 l~~~~~~IlV~TP~rL~~ll~~~~~-------~l~~l~~lViDEad~ll~ 344 (474)
+.. .+||||+|+..|++.+..+.+ .+....++||||||.|.+
T Consensus 141 ~~~-~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 141 NLK-DKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp TGG-GCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred Hhh-cCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH
Confidence 122 579999999999975443221 245678999999999943
No 81
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.35 E-value=1.5e-11 Score=134.45 Aligned_cols=101 Identities=13% Similarity=0.081 Sum_probs=62.6
Q ss_pred CCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcE
Q 011963 357 GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKV 436 (474)
Q Consensus 357 ~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~ 436 (474)
...|+++||||++...... ........+... ....+ .+...+ ...+...++..|...+.. +.++
T Consensus 379 ~~~q~i~~SAT~~~~~~~~-----~~~~~~~~~r~~-~l~~p----~i~v~~-~~~~~~~Ll~~l~~~~~~-----~~~v 442 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH-----SGRVVEQIIRPT-GLLDP----LVRVKP-TENQILDLMEGIRERAAR-----GERT 442 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH-----CSEEEEECSCTT-CCCCC----EEEEEC-STTHHHHHHHHHHHHHHT-----TCEE
T ss_pred hcCCEEEEecCCCHHHHHh-----hhCeeeeeeccC-CCCCC----eEEEec-ccchHHHHHHHHHHHHhc-----CCEE
Confidence 4689999999998643221 111111111111 11111 122222 334555555555555443 4699
Q ss_pred EEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHHhhc
Q 011963 437 LYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 437 LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~Fk~ 473 (474)
||||+|+..|+.|+..|...|+++. .+|..++++|++
T Consensus 443 lVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~ 487 (664)
T 1c4o_A 443 LVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRL 487 (664)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHT
T ss_pred EEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhc
Confidence 9999999999999999999999875 567788999974
No 82
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.19 E-value=5.3e-10 Score=122.23 Aligned_cols=72 Identities=10% Similarity=-0.099 Sum_probs=51.4
Q ss_pred CCCccccCCCchhhHHHHHHHhc----CC-cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHH
Q 011963 194 GVEQDNPLFVNSWGIEFWKCYSS----AK-DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEK 268 (474)
Q Consensus 194 g~~~ptpi~~~~~Q~~~i~~~l~----g~-dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreL 268 (474)
.|.--+|++.+..|..+|..+.. |. ..++..-|| ||||+...- ++ ... .. .+|||+|+..+
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~g-s~k~~~~a~-~~----~~~-------~~-~~lvv~~~~~~ 69 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATG-TGKTFTVSN-LI----KEV-------NK-PTLVIAHNKTL 69 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTT-SCHHHHHHH-HH----HHH-------CC-CEEEECSSHHH
T ss_pred cceeecCCCCCCCCHHHHHHHHHHHhcCCCcEEEECcCC-cHHHHHHHH-HH----HHh-------CC-CEEEEECCHHH
Confidence 35555566666779988876543 33 467788999 999876531 22 211 12 48999999999
Q ss_pred HHHHHHHHHhc
Q 011963 269 AAKVRSVCKPL 279 (474)
Q Consensus 269 a~Qi~~~~~~l 279 (474)
|.|++..+..|
T Consensus 70 A~~l~~el~~~ 80 (661)
T 2d7d_A 70 AGQLYSEFKEF 80 (661)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999998
No 83
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.13 E-value=6.6e-11 Score=128.21 Aligned_cols=143 Identities=13% Similarity=0.100 Sum_probs=94.3
Q ss_pred hhhHHHHHHHhcCCcEEEEcCCCcchhH--HHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-cc
Q 011963 205 SWGIEFWKCYSSAKDILETSGSSSTIVQ--IAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KA 281 (474)
Q Consensus 205 ~~Q~~~i~~~l~g~dvl~~A~TG~SGKT--laf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~ 281 (474)
+||..+++.++.++++++++|+| |||| ++++++++..+.. ..+.++++++||+++|.++.+.+..+ ..
T Consensus 152 ~~Q~~Ai~~~l~~~~~vi~G~pG-TGKTt~l~~ll~~l~~~~~--------~~~~~vll~APTg~AA~~L~e~~~~~~~~ 222 (608)
T 1w36_D 152 NWQKVAAAVALTRRISVISGGPG-TGKTTTVAKLLAALIQMAD--------GERCRIRLAAPTGKAAARLTESLGKALRQ 222 (608)
T ss_dssp CHHHHHHHHHHTBSEEEEECCTT-STHHHHHHHHHHHHHHTCS--------SCCCCEEEEBSSHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCC-CCHHHHHHHHHHHHHHhhh--------cCCCeEEEEeCChhHHHHHHHHHHHHHhc
Confidence 44999999999999999999999 9999 7888888864421 13678999999999999999887765 33
Q ss_pred CCcEEEEEecCCCHHHHHHHHhcCCCc-EEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhCCCCCc
Q 011963 282 FGIHTVSLHPGAAIDHQITGLRSCEPE-FLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPH 360 (474)
Q Consensus 282 ~~i~v~~~~gg~~~~~q~~~l~~~~~~-IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~q 360 (474)
+++..... .+.+. + .. .++ ++-.+|+.. .+ .......-.+++||||||+ |++.+.+..|+..++...|
T Consensus 223 l~l~~~~~-~~~~~--~----~~-Tih~ll~~~~~~~-~~-~~~~~~~l~~d~lIIDEAs-ml~~~~~~~Ll~~l~~~~~ 291 (608)
T 1w36_D 223 LPLTDEQK-KRIPE--D----AS-TLHRLLGAQPGSQ-RL-RHHAGNPLHLDVLVVDEAS-MIDLPMMSRLIDALPDHAR 291 (608)
T ss_dssp SSCCSCCC-CSCSC--C----CB-TTTSCC-------------CTTSCCSCSEEEECSGG-GCBHHHHHHHHHTCCTTCE
T ss_pred CCCCHHHH-hccch--h----hh-hhHhhhccCCCch-HH-HhccCCCCCCCEEEEechh-hCCHHHHHHHHHhCCCCCE
Confidence 33321110 00000 0 00 112 222233321 11 1122223378999999999 7778888999999999999
Q ss_pred EEEEEcc
Q 011963 361 TVVFNDC 367 (474)
Q Consensus 361 ~llfSAT 367 (474)
++++.-.
T Consensus 292 liLvGD~ 298 (608)
T 1w36_D 292 VIFLGDR 298 (608)
T ss_dssp EEEEECT
T ss_pred EEEEcch
Confidence 9998543
No 84
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.03 E-value=3.2e-10 Score=123.01 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=67.5
Q ss_pred hhhHHHHH----HHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-
Q 011963 205 SWGIEFWK----CYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL- 279 (474)
Q Consensus 205 ~~Q~~~i~----~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l- 279 (474)
++|.+.+. .+..|+|+++.|||| ||||+||++|++..+.. .+.+++|++||++|+.|+.+.+..+
T Consensus 6 ~~Q~~~~~~v~~~l~~~~~~~~~apTG-tGKT~a~l~p~l~~~~~---------~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 6 QYQVEAIDFLRSSLQKSYGVALESPTG-SGKTIMALKSALQYSSE---------RKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp HHHHHHHHHHHHHHHHSSEEEEECCTT-SCHHHHHHHHHHHHHHH---------HTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCC-CCHHHHHHHHHHHhhhh---------cCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 44888774 567899999999999 99999999999988765 2569999999999999999999998
Q ss_pred ccCCcEEEEEecCC
Q 011963 280 KAFGIHTVSLHPGA 293 (474)
Q Consensus 280 ~~~~i~v~~~~gg~ 293 (474)
...+++++.+.|+.
T Consensus 76 ~~~~~~~~~l~gr~ 89 (620)
T 4a15_A 76 STMKIRAIPMQGRV 89 (620)
T ss_dssp HHSCCCEEECCCHH
T ss_pred hccCeEEEEEECCC
Confidence 44488888887763
No 85
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=98.33 E-value=5.4e-07 Score=82.88 Aligned_cols=87 Identities=20% Similarity=0.250 Sum_probs=55.2
Q ss_pred HHHhhcCCceEEEccCCcccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhh
Q 011963 376 VQNLLLGSINRLSLNQSVASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKC 455 (474)
Q Consensus 376 ~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~ 455 (474)
...||.+|. .|.++.. ..+..+|.|.++.|+ ...|+..|..+| ... .+++||||+++..++.++..|..
T Consensus 8 ~~~~~~~p~-~i~v~~~-~~~~~~i~q~~~~~~-~~~K~~~L~~~l----~~~----~~~~lVF~~~~~~~~~l~~~L~~ 76 (191)
T 2p6n_A 8 SSGVDLGTE-NLYFQSM-GAASLDVIQEVEYVK-EEAKMVYLLECL----QKT----PPPVLIFAEKKADVDAIHEYLLL 76 (191)
T ss_dssp ----------------------CCSEEEEEECC-GGGHHHHHHHHH----TTS----CSCEEEECSCHHHHHHHHHHHHH
T ss_pred cccccCCCE-EEEECCC-CCCCcCceEEEEEcC-hHHHHHHHHHHH----HhC----CCCEEEEECCHHHHHHHHHHHHH
Confidence 456888897 8888765 567789999999997 567885554444 332 46899999999999999999999
Q ss_pred CCCccc--------chHHHHHHHhhc
Q 011963 456 KGYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 456 ~gi~v~--------~~r~~~i~~Fk~ 473 (474)
.|+++. .+|..+++.|++
T Consensus 77 ~g~~~~~lhg~~~~~~R~~~l~~F~~ 102 (191)
T 2p6n_A 77 KGVEAVAIHGGKDQEERTKAIEAFRE 102 (191)
T ss_dssp HTCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhc
Confidence 998875 568889999975
No 86
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=98.12 E-value=6.8e-06 Score=74.03 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=59.1
Q ss_pred cccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHH
Q 011963 395 SQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNC 466 (474)
Q Consensus 395 ~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~ 466 (474)
.++.+|.|+|+.|+....|+. .|..++.... .+++||||+++..|+.++..|...|+.+. .+|..
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~----~L~~ll~~~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~ 75 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQ----ALCNIYGSIT---IGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRAS 75 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHH----HHHHHHTTSC---CSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHH
T ss_pred CccCCceEEEEEcCChHhHHH----HHHHHHHhCC---CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 456789999999986566884 4455555554 78999999999999999999999998876 57888
Q ss_pred HHHHhhc
Q 011963 467 IVSHIKN 473 (474)
Q Consensus 467 ~i~~Fk~ 473 (474)
+++.|++
T Consensus 76 ~~~~f~~ 82 (175)
T 2rb4_A 76 IIQRFRD 82 (175)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9999985
No 87
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.07 E-value=8.6e-05 Score=77.35 Aligned_cols=222 Identities=9% Similarity=0.060 Sum_probs=120.8
Q ss_pred hCCCCccccCCCchhhHHHHHHHhcC----C-cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccH
Q 011963 192 HDGVEQDNPLFVNSWGIEFWKCYSSA----K-DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQ 266 (474)
Q Consensus 192 ~~g~~~ptpi~~~~~Q~~~i~~~l~g----~-dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Ptr 266 (474)
-+.|..+++- |.+++..++.. . .+++.+|.| ||||.. +..++..+.... ...+++++||.
T Consensus 20 p~~~~~Ln~~-----Q~~av~~~~~~i~~~~~~~li~G~aG-TGKT~l-l~~~~~~l~~~~--------~~~il~~a~T~ 84 (459)
T 3upu_A 20 HMTFDDLTEG-----QKNAFNIVMKAIKEKKHHVTINGPAG-TGATTL-TKFIIEALISTG--------ETGIILAAPTH 84 (459)
T ss_dssp -CCSSCCCHH-----HHHHHHHHHHHHHSSSCEEEEECCTT-SCHHHH-HHHHHHHHHHTT--------CCCEEEEESSH
T ss_pred CCccccCCHH-----HHHHHHHHHHHHhcCCCEEEEEeCCC-CCHHHH-HHHHHHHHHhcC--------CceEEEecCcH
Confidence 4688888888 99999977543 3 899999999 999953 344555555421 23789999999
Q ss_pred HHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhc-----CCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccc
Q 011963 267 EKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRS-----CEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS 341 (474)
Q Consensus 267 eLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~-----~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ 341 (474)
..|..+...+ ++.+..++. .+.. .....+.. .....+...++|||||++.
T Consensus 85 ~Aa~~l~~~~------~~~~~T~h~---------~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~ 139 (459)
T 3upu_A 85 AAKKILSKLS------GKEASTIHS---------ILKINPVTYEENVLFEQ----------KEVPDLAKCRVLICDEVSM 139 (459)
T ss_dssp HHHHHHHHHH------SSCEEEHHH---------HHTEEEEECSSCEEEEE----------CSCCCCSSCSEEEESCGGG
T ss_pred HHHHHHHhhh------ccchhhHHH---------HhccCcccccccchhcc----------cccccccCCCEEEEECchh
Confidence 9887776654 222222210 0100 00011110 1223456789999999995
Q ss_pred cCChhHHHHHHhhCCCCCcEEEEEcc--CCccHHH----HHHHhhcCC-ceEEEccCCccccc-----------------
Q 011963 342 LSKGDTLSLIRQSISGKPHTVVFNDC--LTYTSVP----AVQNLLLGS-INRLSLNQSVASQS----------------- 397 (474)
Q Consensus 342 ll~~~~l~~Il~~l~~~~q~llfSAT--~~~~v~~----l~~~~l~~p-~~~v~v~~~~~~~~----------------- 397 (474)
+ +...+..++..++...+++++.-. +++-... .+..++..+ ...+.+......+.
T Consensus 140 ~-~~~~~~~l~~~~~~~~~~~~vGD~~Ql~~v~~g~~~~~l~~~~~~~~~~~~~L~~~~R~~~~I~~~a~~lr~g~~~~~ 218 (459)
T 3upu_A 140 Y-DRKLFKILLSTIPPWCTIIGIGDNKQIRPVDPGENTAYISPFFTHKDFYQCELTEVKRSNAPIIDVATDVRNGKWIYD 218 (459)
T ss_dssp C-CHHHHHHHHHHSCTTCEEEEEECTTSCCCCCTTSCSCCCCGGGTCTTEEEEECCCCCCCCCHHHHHHHHHHTTCCCCC
T ss_pred C-CHHHHHHHHHhccCCCEEEEECCHHHcCCccCCcchHhHHHHHhcCCCcEEeceeeeeCCcHHHHHHHHHHcCCCcch
Confidence 4 466777777777766777766422 2221110 011222222 22333332211100
Q ss_pred -CCcEEEEEEcCCchhHHHHHHHHHHHHhhcc-CCCCCCcEEEEEccchhHHHHHHHHhhCCC
Q 011963 398 -ACIIQSVNVCASDEEKILKGIQVLDHAYGDH-FHSEPLKVLYIVGKDSKFQNLVSTLKCKGY 458 (474)
Q Consensus 398 -~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~-~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi 458 (474)
..-...++.+.....-. ..+..++... .......+.|.|.|..++..+...|+...+
T Consensus 219 ~~~~~~~v~~~~~~~~~~----~~i~~~~~~~~~~~~~~~~aIL~rtN~~~~~~n~~lr~~~~ 277 (459)
T 3upu_A 219 KVVDGHGVRGFTGDTALR----DFMVNYFSIVKSLDDLFENRVMAFTNKSVDKLNSIIRKKIF 277 (459)
T ss_dssp EEETTEEEEECCSSSSHH----HHHHHHHHHTTTCSCCTTEEEEESSHHHHHHHHHHHHHHHT
T ss_pred hccCCCCeEecCchHHHH----HHHHHHHHhcCCcchhhceEEEEehHhHHHHHHHHHHHHhh
Confidence 00012233333222222 4444444321 100123889999999999999999987533
No 88
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=98.00 E-value=1.4e-05 Score=71.81 Aligned_cols=70 Identities=17% Similarity=0.040 Sum_probs=56.2
Q ss_pred ccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHH
Q 011963 396 QSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCI 467 (474)
Q Consensus 396 ~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~ 467 (474)
++.+|.|+|+.|+ ...|+..|..+|.. .. ..++||||+++..|+.++..|...|+++. .+|+.+
T Consensus 2 ~~~~i~q~~~~~~-~~~K~~~L~~ll~~----~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~ 73 (172)
T 1t5i_A 2 SLHGLQQYYVKLK-DNEKNRKLFDLLDV----LE---FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSR 73 (172)
T ss_dssp ---CCEEEEEECC-GGGHHHHHHHHHHH----SC---CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH
T ss_pred ccCCeEEEEEECC-hHHHHHHHHHHHHh----CC---CCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHH
Confidence 3568999999997 57799666555554 34 67999999999999999999999999876 678889
Q ss_pred HHHhhc
Q 011963 468 VSHIKN 473 (474)
Q Consensus 468 i~~Fk~ 473 (474)
+++|++
T Consensus 74 ~~~f~~ 79 (172)
T 1t5i_A 74 YQQFKD 79 (172)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 999975
No 89
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=97.97 E-value=1.8e-05 Score=70.39 Aligned_cols=71 Identities=17% Similarity=0.155 Sum_probs=58.4
Q ss_pred cccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHH
Q 011963 395 SQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNC 466 (474)
Q Consensus 395 ~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~ 466 (474)
....+|.|.++.++ ...|+..|..+|.. .. ..++||||+++..++.++..|...|+++. .+|..
T Consensus 5 ~~~~~i~~~~~~~~-~~~K~~~L~~ll~~----~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~ 76 (163)
T 2hjv_A 5 LTTRNIEHAVIQVR-EENKFSLLKDVLMT----EN---PDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFD 76 (163)
T ss_dssp -CCCCEEEEEEECC-GGGHHHHHHHHHHH----HC---CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred cCcccceEEEEECC-hHHHHHHHHHHHHh----cC---CCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 45668999999997 57799666666654 33 67999999999999999999999999886 67888
Q ss_pred HHHHhhc
Q 011963 467 IVSHIKN 473 (474)
Q Consensus 467 ~i~~Fk~ 473 (474)
++++|++
T Consensus 77 ~~~~f~~ 83 (163)
T 2hjv_A 77 VMNEFKR 83 (163)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 9999975
No 90
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=97.92 E-value=2.3e-05 Score=69.76 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=55.2
Q ss_pred CCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHH
Q 011963 398 ACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVS 469 (474)
Q Consensus 398 ~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~ 469 (474)
.+|.|+|+.|+....|...|..++.. .. .+++||||+++..|+.++..|...|+.+. .+|..+++
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~----~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 74 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDS----IS---VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMK 74 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHH----TT---CSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHh----CC---CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHH
Confidence 47899999998554599666555554 34 68999999999999999999999998875 57888999
Q ss_pred Hhhc
Q 011963 470 HIKN 473 (474)
Q Consensus 470 ~Fk~ 473 (474)
+|++
T Consensus 75 ~f~~ 78 (165)
T 1fuk_A 75 EFRS 78 (165)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 9975
No 91
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.90 E-value=0.00056 Score=73.94 Aligned_cols=75 Identities=13% Similarity=0.095 Sum_probs=53.1
Q ss_pred hHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-cc--CC
Q 011963 207 GIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KA--FG 283 (474)
Q Consensus 207 Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~--~~ 283 (474)
|.+++. ..+..++|.|+.| ||||.+.+--+. .+..... ...-+.|+|++|+..|.++...+..+ .. .+
T Consensus 14 Q~~av~--~~~~~~lV~a~aG-sGKT~~l~~ri~-~l~~~~~-----~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~~ 84 (647)
T 3lfu_A 14 QREAVA--APRSNLLVLAGAG-SGKTRVLVHRIA-WLMSVEN-----CSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGG 84 (647)
T ss_dssp HHHHHT--CCSSCEEEEECTT-SCHHHHHHHHHH-HHHHTSC-----CCGGGEEEEESSHHHHHHHHHHHHHHHCSCCTT
T ss_pred HHHHHh--CCCCCEEEEECCC-CCHHHHHHHHHH-HHHHhCC-----CChhhEEEEeccHHHHHHHHHHHHHHhccccCC
Confidence 999997 3366899999999 999976543333 3333210 12348999999999999999998886 22 25
Q ss_pred cEEEEEe
Q 011963 284 IHTVSLH 290 (474)
Q Consensus 284 i~v~~~~ 290 (474)
+.+.+++
T Consensus 85 ~~v~Tfh 91 (647)
T 3lfu_A 85 MWVGTFH 91 (647)
T ss_dssp CEEEEHH
T ss_pred cEEEcHH
Confidence 6666654
No 92
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.85 E-value=7.2e-05 Score=80.22 Aligned_cols=127 Identities=13% Similarity=0.115 Sum_probs=83.5
Q ss_pred CCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcc
Q 011963 201 LFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK 280 (474)
Q Consensus 201 i~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 280 (474)
+..+++|..++..++.++.+++.+|.| ||||... ..++..+.. .+..+++++||...|..+...+
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pG-TGKTt~i-~~l~~~l~~---------~g~~Vl~~ApT~~Aa~~L~e~~---- 252 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPG-TGKSTTT-KAVADLAES---------LGLEVGLCAPTGKAARRLGEVT---- 252 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTT-SCHHHHH-HHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHH----
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCC-CCHHHHH-HHHHHHHHh---------cCCeEEEecCcHHHHHHhHhhh----
Confidence 445778999999999999999999999 9999542 233333332 3568899999999998776643
Q ss_pred cCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhCCCCCc
Q 011963 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPH 360 (474)
Q Consensus 281 ~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~q 360 (474)
+.....++ +.+.. .+. .+..........++||||||+.+ +...+..++..++...+
T Consensus 253 --~~~a~Tih---------~ll~~-~~~-----------~~~~~~~~~~~~dvlIIDEasml-~~~~~~~Ll~~~~~~~~ 308 (574)
T 3e1s_A 253 --GRTASTVH---------RLLGY-GPQ-----------GFRHNHLEPAPYDLLIVDEVSMM-GDALMLSLLAAVPPGAR 308 (574)
T ss_dssp --TSCEEEHH---------HHTTE-ETT-----------EESCSSSSCCSCSEEEECCGGGC-CHHHHHHHHTTSCTTCE
T ss_pred --cccHHHHH---------HHHcC-Ccc-----------hhhhhhcccccCCEEEEcCccCC-CHHHHHHHHHhCcCCCE
Confidence 22221211 01110 000 00111223345789999999854 57788889999988888
Q ss_pred EEEEEc
Q 011963 361 TVVFND 366 (474)
Q Consensus 361 ~llfSA 366 (474)
++++.-
T Consensus 309 lilvGD 314 (574)
T 3e1s_A 309 VLLVGD 314 (574)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 888743
No 93
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.77 E-value=0.00026 Score=76.66 Aligned_cols=67 Identities=9% Similarity=-0.090 Sum_probs=52.7
Q ss_pred CchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 203 ~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
.++.|..|+..++.+.-+++.+|.| ||||... .-++..+... .+.++|+++||..-|.++...+...
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppG-TGKT~~~-~~~i~~l~~~--------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPG-TGKTVTS-ATIVYHLARQ--------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTT-SCHHHHH-HHHHHHHHTS--------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCC-CCHHHHH-HHHHHHHHHc--------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4677999999999888889999999 9999754 3444444432 2568999999999999998877654
No 94
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=97.76 E-value=5.7e-05 Score=68.80 Aligned_cols=73 Identities=18% Similarity=0.159 Sum_probs=56.3
Q ss_pred ccccCCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHH
Q 011963 394 ASQSACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSN 465 (474)
Q Consensus 394 ~~~~~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~ 465 (474)
..++.+|.|.++.|+ ..+|+..|..+|... .. ..++||||+++..|+.++..|...|+.+. .+|+
T Consensus 14 ~~~~~~i~q~~~~v~-~~~K~~~L~~ll~~~---~~---~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~ 86 (185)
T 2jgn_A 14 GSTSENITQKVVWVE-ESDKRSFLLDLLNAT---GK---DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDRE 86 (185)
T ss_dssp --CCTTEEEEEEECC-GGGHHHHHHHHHHHC----C---CSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------C
T ss_pred CCCCCCceEEEEEeC-cHHHHHHHHHHHHhc---CC---CCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHH
Confidence 356679999999997 567997666666542 12 67999999999999999999999999876 5677
Q ss_pred HHHHHhhc
Q 011963 466 CIVSHIKN 473 (474)
Q Consensus 466 ~~i~~Fk~ 473 (474)
.+++.|++
T Consensus 87 ~~~~~f~~ 94 (185)
T 2jgn_A 87 EALHQFRS 94 (185)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88999974
No 95
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00043 Score=77.01 Aligned_cols=67 Identities=10% Similarity=-0.084 Sum_probs=53.5
Q ss_pred CchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 203 VNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 203 ~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
.++.|..|+..++.+.-+++.+|.| ||||... .-++..+... .+.++|+++||..-|.++...+..+
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppG-TGKT~~i-~~~i~~l~~~--------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPG-TGKTVTS-ATIVYHLSKI--------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTT-SSHHHHH-HHHHHHHHHH--------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCC-CCHHHHH-HHHHHHHHhC--------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 5788999999999877789999999 9999654 3444445442 2458999999999999998887664
No 96
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.63 E-value=0.0005 Score=76.46 Aligned_cols=68 Identities=9% Similarity=-0.111 Sum_probs=53.5
Q ss_pred CCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 202 FVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 202 ~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
..+++|..|+..++.+.-+++.+|.| ||||... .-++..+... .+.++|+++||..-|.++...+...
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppG-TGKT~ti-~~~i~~l~~~--------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPG-TGKTVTS-ATIVYHLARQ--------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTT-SCHHHHH-HHHHHHHHTT--------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCC-CCHHHHH-HHHHHHHHHc--------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 35788999999999888889999999 9999753 3445445432 2558999999999999988877654
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.45 E-value=0.00048 Score=74.82 Aligned_cols=66 Identities=12% Similarity=-0.028 Sum_probs=50.7
Q ss_pred CchhhHHHHHHHhcCCc-EEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 203 VNSWGIEFWKCYSSAKD-ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 203 ~~~~Q~~~i~~~l~g~d-vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
.|+-|.+|+..++..++ .|+..|.| ||||.+- +-++..+.. .+.++|+++||..=|.++...+...
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPG-TGKT~ti-~~~I~~l~~---------~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPG-TGKTTTV-VEIILQAVK---------QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTT-SCHHHHH-HHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCC-CCHHHHH-HHHHHHHHh---------CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 57779999999998876 57788999 9999764 344444444 3568999999999888887766543
No 98
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=96.50 E-value=2.4e-05 Score=70.01 Aligned_cols=69 Identities=16% Similarity=0.108 Sum_probs=54.7
Q ss_pred CCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHH
Q 011963 398 ACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVS 469 (474)
Q Consensus 398 ~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~ 469 (474)
.+|.|.++.|+....|+..|..+| .... ..++||||+++..|+.++..|...|+.+. .+|..+++
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll----~~~~---~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~ 74 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLL----KQPE---ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIK 74 (170)
Confidence 468899999975477885554444 4444 67999999999999999999999988875 56778888
Q ss_pred Hhhc
Q 011963 470 HIKN 473 (474)
Q Consensus 470 ~Fk~ 473 (474)
.|++
T Consensus 75 ~f~~ 78 (170)
T 2yjt_D 75 RLTE 78 (170)
Confidence 8874
No 99
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=97.28 E-value=0.00043 Score=68.06 Aligned_cols=67 Identities=6% Similarity=0.028 Sum_probs=55.0
Q ss_pred CcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHH
Q 011963 399 CIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSH 470 (474)
Q Consensus 399 ~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~ 470 (474)
++.|+++.|+ ..+|+..|..++.. .. .+++||||+|+..++.|+..|...|+.+. .+|+.+++.
T Consensus 2 ~v~~~~i~~~-~~~K~~~L~~ll~~----~~---~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~ 73 (300)
T 3i32_A 2 TYEEEAVPAP-VRGRLEVLSDLLYV----AS---PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGA 73 (300)
T ss_dssp CSEEEEEECC-SSSHHHHHHHHHHH----HC---CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHH
T ss_pred ceEEEEEECC-HHHHHHHHHHHHHh----cC---CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHH
Confidence 4789999997 46799655555544 33 78999999999999999999999999885 578889999
Q ss_pred hhc
Q 011963 471 IKN 473 (474)
Q Consensus 471 Fk~ 473 (474)
|++
T Consensus 74 f~~ 76 (300)
T 3i32_A 74 FRQ 76 (300)
T ss_dssp HHH
T ss_pred hhc
Confidence 975
No 100
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.25 E-value=0.0028 Score=64.34 Aligned_cols=142 Identities=11% Similarity=0.095 Sum_probs=87.2
Q ss_pred ccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh
Q 011963 199 NPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (474)
Q Consensus 199 tpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 278 (474)
.|+...+||...+..+...+-+++..+-+ .|||.+.+.-++..+... .+..+++++||++.|..+.+.+..
T Consensus 160 ~p~~L~p~Qk~il~~l~~~R~~vi~~sRq-~GKT~l~a~~~l~~a~~~--------~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQ-LGKTTVVAIFLAHFVCFN--------KDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp EECCCCHHHHHHHHHHHHSSEEEEEECSS-SCHHHHHHHHHHHHHHSS--------SSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhhccCcEEEEEEcCc-CChhHHHHHHHHHHHHhC--------CCCeEEEEeCCHHHHHHHHHHHHH
Confidence 45566789999998776557789999999 999988766665444332 366899999999999988887776
Q ss_pred c-ccCC--cE--EEEEecCCCHHHHHHHHhcCCCcEEEE--ChHHHHHHHHcCCCCCCCcceEEeccccccCC-hhHHHH
Q 011963 279 L-KAFG--IH--TVSLHPGAAIDHQITGLRSCEPEFLVS--TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSL 350 (474)
Q Consensus 279 l-~~~~--i~--v~~~~gg~~~~~q~~~l~~~~~~IlV~--TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~-~~~l~~ 350 (474)
+ .... ++ +... .... + .+.+ |..|.+. .|+.+. + .++.++|+||+|.+-+ .+.+..
T Consensus 231 mi~~~P~ll~~~~~~~-~~~~----I-~f~n-Gs~i~~lsa~~~slr------G---~~~~~viiDE~a~~~~~~el~~a 294 (385)
T 2o0j_A 231 AIELLPDFLQPGIVEW-NKGS----I-ELDN-GSSIGAYASSPDAVR------G---NSFAMIYIEDCAFIPNFHDSWLA 294 (385)
T ss_dssp HHHHSCTTTSCCEEEE-CSSE----E-EETT-SCEEEEEECSHHHHH------T---SCCSEEEEESGGGSTTHHHHHHH
T ss_pred HHHhChHhhhhhhccC-CccE----E-EeCC-CCEEEEEECCCCCcc------C---CCCCEEEechhhhcCCCHHHHHH
Confidence 5 2221 11 1111 1100 0 1122 3333332 354431 1 2357899999999876 444555
Q ss_pred HHhhCC--CCCcEEEEE
Q 011963 351 IRQSIS--GKPHTVVFN 365 (474)
Q Consensus 351 Il~~l~--~~~q~llfS 365 (474)
+...+. .+.+++++|
T Consensus 295 l~~~ls~~~~~kiiiiS 311 (385)
T 2o0j_A 295 IQPVISSGRRSKIIITT 311 (385)
T ss_dssp HHHHHHSTTCCEEEEEE
T ss_pred HHHHhhcCCCCcEEEEe
Confidence 544443 345655554
No 101
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.21 E-value=0.0079 Score=65.43 Aligned_cols=78 Identities=8% Similarity=-0.017 Sum_probs=55.2
Q ss_pred hhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-cc--
Q 011963 205 SWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KA-- 281 (474)
Q Consensus 205 ~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~-- 281 (474)
+-|.+++.. .+..++|.|+.| ||||.+..--+...+.... ......|+|+.|+..|.++...+..+ ..
T Consensus 5 ~~Q~~av~~--~~~~~lV~AgaG-SGKT~~l~~ri~~ll~~~~------~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~ 75 (673)
T 1uaa_A 5 PGQQQAVEF--VTGPCLVLAGAG-SGKTRVITNKIAHLIRGCG------YQARHIAAVTFTNKAAREMKERVGQTLGRKE 75 (673)
T ss_dssp HHHHHHHHC--CSSEEEECCCTT-SCHHHHHHHHHHHHHHHHC------CCGGGEEEEESSHHHHHHHHHHHHHHSCTTT
T ss_pred HHHHHHHhC--CCCCEEEEeCCC-CChHHHHHHHHHHHHHhcC------CCHHHeEEEeccHHHHHHHHHHHHHHcCccc
Confidence 449999875 367899999999 9999765444443333211 12447999999999999999988875 32
Q ss_pred -CCcEEEEEec
Q 011963 282 -FGIHTVSLHP 291 (474)
Q Consensus 282 -~~i~v~~~~g 291 (474)
.++.+.++++
T Consensus 76 ~~~~~v~Tfhs 86 (673)
T 1uaa_A 76 ARGLMISTFHT 86 (673)
T ss_dssp TTTSEEEEHHH
T ss_pred ccCCEEEeHHH
Confidence 2577776653
No 102
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.13 E-value=0.021 Score=62.69 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=53.6
Q ss_pred hHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-cc--CC
Q 011963 207 GIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KA--FG 283 (474)
Q Consensus 207 Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~--~~ 283 (474)
|.+++.. .+..++|.|+.| ||||.+..--+. +++... + ...-..|+|+.|+..|.++.+.+..+ .. .+
T Consensus 16 Q~~av~~--~~g~~lV~AgAG-SGKT~vL~~ri~-~ll~~~---~--~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~~ 86 (724)
T 1pjr_A 16 QQEAVRT--TEGPLLIMAGAG-SGKTRVLTHRIA-YLMAEK---H--VAPWNILAITFTNKAAREMRERVQSLLGGAAED 86 (724)
T ss_dssp HHHHHHC--CSSCEEEEECTT-SCHHHHHHHHHH-HHHHTT---C--CCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTT
T ss_pred HHHHHhC--CCCCEEEEEcCC-CCHHHHHHHHHH-HHHHhc---C--CCHHHeEEEeccHHHHHHHHHHHHHHhcccccC
Confidence 9999875 357899999999 999976544343 333321 1 12447899999999999999888775 22 25
Q ss_pred cEEEEEec
Q 011963 284 IHTVSLHP 291 (474)
Q Consensus 284 i~v~~~~g 291 (474)
+.+.++++
T Consensus 87 ~~v~Tfhs 94 (724)
T 1pjr_A 87 VWISTFHS 94 (724)
T ss_dssp SEEEEHHH
T ss_pred cEEeeHHH
Confidence 77776553
No 103
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=97.11 E-value=0.00063 Score=63.11 Aligned_cols=67 Identities=6% Similarity=0.025 Sum_probs=53.5
Q ss_pred CcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc--------chHHHHHHH
Q 011963 399 CIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS--------TGSNCIVSH 470 (474)
Q Consensus 399 ~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~--------~~r~~~i~~ 470 (474)
.+.+.++.++ ...|+..|..++. ... .+++||||+++..++.++..|...|+.+. .+|+.+++.
T Consensus 5 ~~~~~~~~~~-~~~k~~~l~~ll~----~~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~ 76 (212)
T 3eaq_A 5 TYEEEAVPAP-VRGRLEVLSDLLY----VAS---PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGA 76 (212)
T ss_dssp CBCCEEEECC-TTSHHHHHHHHHH----HHC---CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHH
T ss_pred ceeeeEEeCC-HHHHHHHHHHHHH----hCC---CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHH
Confidence 3566777786 5679965555554 334 78999999999999999999999999875 578889999
Q ss_pred hhc
Q 011963 471 IKN 473 (474)
Q Consensus 471 Fk~ 473 (474)
|++
T Consensus 77 f~~ 79 (212)
T 3eaq_A 77 FRQ 79 (212)
T ss_dssp HHS
T ss_pred HHC
Confidence 975
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.92 E-value=0.011 Score=63.51 Aligned_cols=143 Identities=10% Similarity=0.075 Sum_probs=88.4
Q ss_pred ccCCCchhhHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh
Q 011963 199 NPLFVNSWGIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (474)
Q Consensus 199 tpi~~~~~Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 278 (474)
.|+...+||...+..+...+-+++..+-| +|||.+...-++..+... .+..+++++||++.|..+...+..
T Consensus 160 ~~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq-~GKS~~~a~~~l~~~~~~--------~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQ-LGKTTVVAIFLAHFVCFN--------KDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp BBCCCCHHHHHHHHHHHHCSEEEEEECSS-SCHHHHHHHHHHHHHHTS--------SSCEEEEEESSHHHHHHHHHHHHH
T ss_pred ccCcCCHHHHHHHHhhccccEEEEEEcCc-cChHHHHHHHHHHHHHhC--------CCCeEEEEECCHHHHHHHHHHHHH
Confidence 35556789999998875567899999999 999988766555444432 256899999999999999988877
Q ss_pred c-ccCC--cEEEEE-ecCCCHHHHHHHHhcCCCcEEEE--ChHHHHHHHHcCCCCCCCcceEEeccccccCC-hhHHHHH
Q 011963 279 L-KAFG--IHTVSL-HPGAAIDHQITGLRSCEPEFLVS--TPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK-GDTLSLI 351 (474)
Q Consensus 279 l-~~~~--i~v~~~-~gg~~~~~q~~~l~~~~~~IlV~--TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~-~~~l~~I 351 (474)
+ ...+ ++.... ..... + .+.+ |..|.+. .|+.+.- . +..++|+||+|.+-+ .+.+..+
T Consensus 231 ~i~~~p~~~~~~~~~~~~~~----i-~~~n-Gs~i~~~s~~~~~lrG----~-----~~~~~iiDE~~~~~~~~~l~~~~ 295 (592)
T 3cpe_A 231 AIELLPDFLQPGIVEWNKGS----I-ELDN-GSSIGAYASSPDAVRG----N-----SFAMIYIEDCAFIPNFHDSWLAI 295 (592)
T ss_dssp HHTTSCTTTSCCEEEECSSE----E-EETT-SCEEEEEECCHHHHHH----S-----CCSEEEEETGGGCTTHHHHHHHH
T ss_pred HHHhChHhhccccccCCccE----E-EecC-CCEEEEEeCCCCCccC----C-----CcceEEEehhccCCchhHHHHHH
Confidence 6 3222 211000 01100 0 1122 3334333 3554421 1 356899999998876 4444555
Q ss_pred HhhCC--CCCcEEEEE
Q 011963 352 RQSIS--GKPHTVVFN 365 (474)
Q Consensus 352 l~~l~--~~~q~llfS 365 (474)
...+. .+.+++++|
T Consensus 296 ~~~l~~~~~~~ii~is 311 (592)
T 3cpe_A 296 QPVISSGRRSKIIITT 311 (592)
T ss_dssp HHHHSSSSCCEEEEEE
T ss_pred HHHhccCCCceEEEEe
Confidence 55553 345555544
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.37 E-value=0.032 Score=49.55 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=24.9
Q ss_pred CcceEEecccccc-CC---hhHHHHHHhhCC-CCCcEEEEEccCCcc
Q 011963 330 GVSLLVVDRLDSL-SK---GDTLSLIRQSIS-GKPHTVVFNDCLTYT 371 (474)
Q Consensus 330 ~l~~lViDEad~l-l~---~~~l~~Il~~l~-~~~q~llfSAT~~~~ 371 (474)
+..+|||||++.. ++ ...+..++.... ... .+++|...+..
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~-~ii~tsn~~~~ 145 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLK-STIITTNYSLQ 145 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTC-EEEEECCCCSC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCC-CEEEEcCCChh
Confidence 4578999999964 44 556666665553 334 44555555443
No 106
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.08 E-value=0.023 Score=58.50 Aligned_cols=103 Identities=14% Similarity=0.061 Sum_probs=60.0
Q ss_pred EEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH
Q 011963 220 ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI 299 (474)
Q Consensus 220 vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~ 299 (474)
.++.++-| +|||.... -.+ . .-..+|++||++++..+.+.+... +..
T Consensus 164 ~~I~G~aG-sGKTt~I~-~~~----~----------~~~~lVlTpT~~aa~~l~~kl~~~---~~~-------------- 210 (446)
T 3vkw_A 164 VLVDGVPG-CGKTKEIL-SRV----N----------FEEDLILVPGRQAAEMIRRRANAS---GII-------------- 210 (446)
T ss_dssp EEEEECTT-SCHHHHHH-HHC----C----------TTTCEEEESCHHHHHHHHHHHTTT---SCC--------------
T ss_pred EEEEcCCC-CCHHHHHH-HHh----c----------cCCeEEEeCCHHHHHHHHHHhhhc---Ccc--------------
Confidence 56788999 99996542 111 1 114599999999998888776433 110
Q ss_pred HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhCCCCCcEEEE
Q 011963 300 TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVF 364 (474)
Q Consensus 300 ~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~llf 364 (474)
. ....-|.|-++++ ++......-..++||||||- |++...+..++..++. .+++++
T Consensus 211 ----~-~~~~~V~T~dsfL--~~~~~~~~~~~d~liiDE~s-m~~~~~l~~l~~~~~~-~~vilv 266 (446)
T 3vkw_A 211 ----V-ATKDNVRTVDSFL--MNYGKGARCQFKRLFIDEGL-MLHTGCVNFLVEMSLC-DIAYVY 266 (446)
T ss_dssp ----C-CCTTTEEEHHHHH--HTTTSSCCCCCSEEEEETGG-GSCHHHHHHHHHHTTC-SEEEEE
T ss_pred ----c-cccceEEEeHHhh--cCCCCCCCCcCCEEEEeCcc-cCCHHHHHHHHHhCCC-CEEEEe
Confidence 0 1122355554432 22222223347899999996 6665556566655543 444444
No 107
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=95.94 E-value=0.072 Score=46.61 Aligned_cols=74 Identities=19% Similarity=0.334 Sum_probs=58.0
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+.++||.++|+..+..+...+... |+.+..++|+.+..... ..+..+.+.|||+|. +-..++++.++.
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gld~~~~~ 105 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL---GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD------VAARGIDIENIS 105 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTTTCCCSCCS
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC------hhhcCCchhcCC
Confidence 458999999999999998887765 78899999998865543 344566789999994 224678888899
Q ss_pred eEEecc
Q 011963 333 LLVVDR 338 (474)
Q Consensus 333 ~lViDE 338 (474)
++|.-.
T Consensus 106 ~Vi~~~ 111 (163)
T 2hjv_A 106 LVINYD 111 (163)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 988643
No 108
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=95.48 E-value=0.14 Score=44.87 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=57.7
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+.++||.++|++-+..+...+... ++.+..++|+.+..... ..+..+...|||+|. +-..++++.++.
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~G~d~~~~~ 100 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND---KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD------LLARGIDVQQVS 100 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG------GGTTTCCCCSCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc---CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC------hhhcCCCcccCC
Confidence 458999999999999888887765 78899999998865543 444566789999994 224678888999
Q ss_pred eEEecc
Q 011963 333 LLVVDR 338 (474)
Q Consensus 333 ~lViDE 338 (474)
++|.-.
T Consensus 101 ~Vi~~~ 106 (165)
T 1fuk_A 101 LVINYD 106 (165)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 888743
No 109
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=95.43 E-value=0.1 Score=47.93 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=57.5
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHH---HHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQIT---GLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~---~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+..+||.++|++-+..+...+... |+.+..++|+.+...+.. .+..+..+|||||. +-..++++.++.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidi~~v~ 101 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL---GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD------VAARGLDIPQVD 101 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH---TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT------TTTCSSSCCCBS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc---CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC------hhhcCCCCccCc
Confidence 458999999999999988887765 788999999998766543 44566789999994 234678999999
Q ss_pred eEEe
Q 011963 333 LLVV 336 (474)
Q Consensus 333 ~lVi 336 (474)
++|.
T Consensus 102 ~Vi~ 105 (212)
T 3eaq_A 102 LVVH 105 (212)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 110
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=95.42 E-value=0.084 Score=46.73 Aligned_cols=74 Identities=16% Similarity=0.183 Sum_probs=58.0
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+.++||.++|+..+..+...+... |+.+..++|+.+..... ..+..+.++|||+|. +-..++++..+.
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~~~~~ 104 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD---GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDVKQVT 104 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT---TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCCTTEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCcccCC
Confidence 558999999999999998887665 78899999998866543 444566799999994 224678899999
Q ss_pred eEEecc
Q 011963 333 LLVVDR 338 (474)
Q Consensus 333 ~lViDE 338 (474)
++|.-.
T Consensus 105 ~Vi~~d 110 (175)
T 2rb4_A 105 IVVNFD 110 (175)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 988533
No 111
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=95.20 E-value=0.15 Score=46.00 Aligned_cols=72 Identities=18% Similarity=0.352 Sum_probs=56.7
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+.++||.++|++-+..+...+... |+.+..++|+.+..... ..+..+.+.|||+|. +-..++++.++.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~---g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------~~~~Gldi~~v~ 124 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK---GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD------VASKGLDFPAIQ 124 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH---TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH------HHHTTCCCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC------chhcCCCcccCC
Confidence 447999999999999998888765 78899999998865543 344556799999993 123578888899
Q ss_pred eEEe
Q 011963 333 LLVV 336 (474)
Q Consensus 333 ~lVi 336 (474)
++|.
T Consensus 125 ~VI~ 128 (191)
T 2p6n_A 125 HVIN 128 (191)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 112
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=95.06 E-value=0.13 Score=45.56 Aligned_cols=74 Identities=12% Similarity=0.216 Sum_probs=58.2
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+.++||.++|++-+..+...+... |+.+..++|+.+..... ..+.++.+.|||+|.- -..++++.++.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gldi~~~~ 101 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ---NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FGRGMDIERVN 101 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC------CSTTCCGGGCS
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc---CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc------hhcCcchhhCC
Confidence 458999999999999998887765 78899999998866543 3445667999999941 24678899999
Q ss_pred eEEecc
Q 011963 333 LLVVDR 338 (474)
Q Consensus 333 ~lViDE 338 (474)
++|.-.
T Consensus 102 ~Vi~~d 107 (172)
T 1t5i_A 102 IAFNYD 107 (172)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 988643
No 113
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.03 E-value=0.025 Score=52.08 Aligned_cols=18 Identities=6% Similarity=-0.202 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCcchhHHH
Q 011963 216 SAKDILETSGSSSTIVQIA 234 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (474)
.++.+++..|+| +|||..
T Consensus 51 ~~~~~ll~G~~G-~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVK-SGRTHL 68 (242)
T ss_dssp SCSEEEEECSTT-SSHHHH
T ss_pred CCCeEEEECCCC-CCHHHH
Confidence 357899999999 999953
No 114
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.97 E-value=0.099 Score=51.03 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=23.9
Q ss_pred cceEEeccccccCC----hhHHHHHHhhC-CCCCcEEEEEccCCc
Q 011963 331 VSLLVVDRLDSLSK----GDTLSLIRQSI-SGKPHTVVFNDCLTY 370 (474)
Q Consensus 331 l~~lViDEad~ll~----~~~l~~Il~~l-~~~~q~llfSAT~~~ 370 (474)
..+|+|||+|.+.. ...+..++..+ ....+ ++++++.++
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~-iii~~~~~~ 142 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQ-IILASDRHP 142 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCE-EEEEESSCG
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCe-EEEEecCCh
Confidence 46899999999985 44444555443 23445 445556543
No 115
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.96 E-value=0.082 Score=48.08 Aligned_cols=106 Identities=5% Similarity=0.074 Sum_probs=55.2
Q ss_pred CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCH
Q 011963 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAI 295 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~ 295 (474)
|+=.+++.|.| ||||.+. +-++.+... .+.+++++-|...- +.-...+ +..|+..
T Consensus 8 g~i~v~~G~mg-sGKTT~l-l~~a~r~~~---------~g~kV~v~k~~~d~----r~~~~~i~s~~g~~~--------- 63 (191)
T 1xx6_A 8 GWVEVIVGPMY-SGKSEEL-IRRIRRAKI---------AKQKIQVFKPEIDN----RYSKEDVVSHMGEKE--------- 63 (191)
T ss_dssp CEEEEEECSTT-SSHHHHH-HHHHHHHHH---------TTCCEEEEEEC-----------CEEECTTSCEE---------
T ss_pred CEEEEEECCCC-CcHHHHH-HHHHHHHHH---------CCCEEEEEEeccCc----cchHHHHHhhcCCce---------
Confidence 44467788999 9999654 344444332 36689999886321 1001111 2223221
Q ss_pred HHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhCCCCCcEEEE
Q 011963 296 DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVF 364 (474)
Q Consensus 296 ~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~llf 364 (474)
+.+.+..+..+++++. ...++|+||||+.+-. +.+..+....+....++++
T Consensus 64 -----------~a~~~~~~~~i~~~~~------~~~dvViIDEaqfl~~-~~v~~l~~l~~~~~~Vi~~ 114 (191)
T 1xx6_A 64 -----------QAVAIKNSREILKYFE------EDTEVIAIDEVQFFDD-EIVEIVNKIAESGRRVICA 114 (191)
T ss_dssp -----------ECEEESSSTHHHHHCC------TTCSEEEECSGGGSCT-HHHHHHHHHHHTTCEEEEE
T ss_pred -----------eeEeeCCHHHHHHHHh------ccCCEEEEECCCCCCH-HHHHHHHHHHhCCCEEEEE
Confidence 1233444444444432 2478999999998653 2344433323445666655
No 116
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=94.79 E-value=0.046 Score=52.54 Aligned_cols=59 Identities=10% Similarity=0.187 Sum_probs=49.9
Q ss_pred chhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhC-CCccc--------chHHHHHHHhhc
Q 011963 410 DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCK-GYSIS--------TGSNCIVSHIKN 473 (474)
Q Consensus 410 ~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~-gi~v~--------~~r~~~i~~Fk~ 473 (474)
...|+..|..+|..+... +.++||||++...++.|...|... |+++. .+|+..++.|++
T Consensus 94 ~s~K~~~L~~ll~~~~~~-----~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~ 161 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDE-----GDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN 161 (271)
T ss_dssp TCHHHHHHHHHHHHHHHT-----TCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhC-----CCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcC
Confidence 467998888888887654 569999999999999999999885 88775 578899999975
No 117
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.71 E-value=0.1 Score=46.97 Aligned_cols=39 Identities=8% Similarity=-0.163 Sum_probs=25.7
Q ss_pred cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEecc
Q 011963 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS 265 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Pt 265 (474)
.|+=+++..|.| +|||...+ -++..+.. .+..++++.|.
T Consensus 2 ~g~i~vi~G~~g-sGKTT~ll-~~~~~~~~---------~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMY-SGKTTELL-SFVEIYKL---------GKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTT-SSHHHHHH-HHHHHHHH---------TTCEEEEEEEC
T ss_pred ccEEEEEECCCC-CCHHHHHH-HHHHHHHH---------CCCeEEEEeec
Confidence 355577889999 99996543 33333332 24578888886
No 118
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.57 E-value=0.26 Score=44.05 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=25.8
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEE
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfS 365 (474)
..-.+|||||+|.+.. ...+..++...+....+++.|
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 4567899999999976 666667777655555555443
No 119
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.45 E-value=0.28 Score=45.67 Aligned_cols=110 Identities=6% Similarity=0.009 Sum_probs=60.3
Q ss_pred CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCCH
Q 011963 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAAI 295 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~ 295 (474)
|.=++++.|+| +|||.+. +-++.++.. .+.+++|+.|...= +-...+ ..+|+.
T Consensus 12 G~i~litG~mG-sGKTT~l-l~~~~r~~~---------~g~kVli~~~~~d~-----r~~~~i~srlG~~---------- 65 (223)
T 2b8t_A 12 GWIEFITGPMF-AGKTAEL-IRRLHRLEY---------ADVKYLVFKPKIDT-----RSIRNIQSRTGTS---------- 65 (223)
T ss_dssp CEEEEEECSTT-SCHHHHH-HHHHHHHHH---------TTCCEEEEEECCCG-----GGCSSCCCCCCCS----------
T ss_pred cEEEEEECCCC-CcHHHHH-HHHHHHHHh---------cCCEEEEEEeccCc-----hHHHHHHHhcCCC----------
Confidence 45577788999 9999654 334444433 35578888774320 000011 111211
Q ss_pred HHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEc
Q 011963 296 DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFND 366 (474)
Q Consensus 296 ~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSA 366 (474)
-..+-+.++..+++.+.... .-...++|||||++.+.. .+.+..+.. ...+++++.-
T Consensus 66 ----------~~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl 124 (223)
T 2b8t_A 66 ----------LPSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGL 124 (223)
T ss_dssp ----------SCCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECC
T ss_pred ----------ccccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEec
Confidence 11344566777777776532 223478999999997653 334433333 3566666543
No 120
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=94.40 E-value=0.41 Score=50.32 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=63.1
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCc
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l 331 (474)
.+..+||.++|+.-+..++..+......++.+..++|+.+..... ..+..+.++|||||. +-..++++.++
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~GiDip~v 411 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------VGARGMDFPNV 411 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------GGTSSCCCTTC
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc------hhhcCCCcccC
Confidence 356899999999999999999988755588999999998866543 344566799999996 23478999999
Q ss_pred ceEEeccc
Q 011963 332 SLLVVDRL 339 (474)
Q Consensus 332 ~~lViDEa 339 (474)
.++|.-..
T Consensus 412 ~~VI~~~~ 419 (563)
T 3i5x_A 412 HEVLQIGV 419 (563)
T ss_dssp CEEEEESC
T ss_pred CEEEEECC
Confidence 99986543
No 121
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.37 E-value=0.34 Score=47.62 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=25.8
Q ss_pred CcceEEeccccccCChhHHHHHHhhC---CCCCcEEEEEccCCc
Q 011963 330 GVSLLVVDRLDSLSKGDTLSLIRQSI---SGKPHTVVFNDCLTY 370 (474)
Q Consensus 330 ~l~~lViDEad~ll~~~~l~~Il~~l---~~~~q~llfSAT~~~ 370 (474)
..-++||||+|.|.+.+.+..+++.. ..+.-+|+.++|+..
T Consensus 132 ~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 132 RKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp CEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred CceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 34589999999999755555555432 223445666777643
No 122
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.04 E-value=0.42 Score=49.03 Aligned_cols=52 Identities=6% Similarity=0.139 Sum_probs=37.9
Q ss_pred CCcceEEeccccccC--C----hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhh
Q 011963 329 SGVSLLVVDRLDSLS--K----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLL 380 (474)
Q Consensus 329 ~~l~~lViDEad~ll--~----~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l 380 (474)
.+.+++|||++-++- . ..++..|...+.+..-+++++|+....+...+..|-
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~ 235 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFH 235 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHh
Confidence 356788999998765 3 566667777776666678889988777777776665
No 123
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.86 E-value=0.31 Score=47.97 Aligned_cols=30 Identities=7% Similarity=-0.014 Sum_probs=22.8
Q ss_pred hhhHHHHHHHh----cCC---cEEEEcCCCcchhHHHH
Q 011963 205 SWGIEFWKCYS----SAK---DILETSGSSSTIVQIAW 235 (474)
Q Consensus 205 ~~Q~~~i~~~l----~g~---dvl~~A~TG~SGKTlaf 235 (474)
|||..++..+. .|+ -+++..|.| +|||...
T Consensus 5 pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G-~GKt~~a 41 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGHHALLIQALPG-MGDDALI 41 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTT-SCHHHHH
T ss_pred CchHHHHHHHHHHHHcCCcceeEEEECCCC-chHHHHH
Confidence 77888876653 454 389999999 9998543
No 124
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=93.83 E-value=0.63 Score=49.27 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=63.1
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCc
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l 331 (474)
.+..+||.++|+.-|..++..+......++.+..++|+.+..... ..+..+..+|||||. +-..++++.++
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~------~~~~GiDip~v 360 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------VGARGMDFPNV 360 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------GGTSSCCCTTC
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc------hhhcCCCcccC
Confidence 356899999999999999999988745588999999998866543 444566799999996 23468999999
Q ss_pred ceEEeccc
Q 011963 332 SLLVVDRL 339 (474)
Q Consensus 332 ~~lViDEa 339 (474)
.++|.-..
T Consensus 361 ~~VI~~~~ 368 (579)
T 3sqw_A 361 HEVLQIGV 368 (579)
T ss_dssp CEEEEESC
T ss_pred CEEEEcCC
Confidence 99987654
No 125
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=93.71 E-value=0.31 Score=47.48 Aligned_cols=72 Identities=19% Similarity=0.266 Sum_probs=56.5
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+..+||.++|++-+..+...+... |+.+..++|+.+...+. ..+..+..+|||||- +-..++++.++.
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~---g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~------va~~Gidi~~v~ 98 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL---GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD------VAARGLDIPQVD 98 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT---TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS------TTTCSTTCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC---CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec------hhhcCcccccee
Confidence 458999999999988888776554 88999999998866554 344566789999994 234678999999
Q ss_pred eEEe
Q 011963 333 LLVV 336 (474)
Q Consensus 333 ~lVi 336 (474)
++|.
T Consensus 99 ~VI~ 102 (300)
T 3i32_A 99 LVVH 102 (300)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 126
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.64 E-value=0.11 Score=45.06 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=31.4
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCC-CCCcEEEEEccCCc-cH---HHHHHHhhcC
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSIS-GKPHTVVFNDCLTY-TS---VPAVQNLLLG 382 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~-~~~q~llfSAT~~~-~v---~~l~~~~l~~ 382 (474)
.+.++|||||++.+.. ...+..++..+. ....+++++...++ .. ..+..++...
T Consensus 82 ~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~~g 142 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYC 142 (149)
T ss_dssp GGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGGGS
T ss_pred hCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHhcC
Confidence 3568999999998766 555555655443 22443555555433 22 5555555443
No 127
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=93.62 E-value=0.19 Score=45.06 Aligned_cols=72 Identities=21% Similarity=0.333 Sum_probs=47.8
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+.++||.++|+.-+..+...+... |+.+..++|+.+.... ...+..+.+.|||+|. +-..++++.++.
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~---g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gldi~~~~ 116 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE---GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA------VAARGLDISNVK 116 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT---TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSBS
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc---CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC------hhhcCCCcccCC
Confidence 568999999999999988887765 7889999999875443 4455566789999993 123567888888
Q ss_pred eEEe
Q 011963 333 LLVV 336 (474)
Q Consensus 333 ~lVi 336 (474)
++|.
T Consensus 117 ~VI~ 120 (185)
T 2jgn_A 117 HVIN 120 (185)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 128
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.51 E-value=0.53 Score=46.34 Aligned_cols=17 Identities=12% Similarity=-0.103 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCcchhHHH
Q 011963 217 AKDILETSGSSSTIVQIA 234 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (474)
+..+++.+|+| +|||..
T Consensus 44 ~~~vll~G~~G-~GKT~l 60 (387)
T 2v1u_A 44 PSNALLYGLTG-TGKTAV 60 (387)
T ss_dssp CCCEEECBCTT-SSHHHH
T ss_pred CCcEEEECCCC-CCHHHH
Confidence 45899999999 999954
No 129
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.39 E-value=0.37 Score=49.44 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=23.5
Q ss_pred CcceEEeccccccCC----hhHHHHHHhhC-CCCCcEEEEEc
Q 011963 330 GVSLLVVDRLDSLSK----GDTLSLIRQSI-SGKPHTVVFND 366 (474)
Q Consensus 330 ~l~~lViDEad~ll~----~~~l~~Il~~l-~~~~q~llfSA 366 (474)
...+|+|||+|.+.+ ...+..++..+ ....++++.|.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 456899999999986 44454555443 34456555443
No 130
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.91 E-value=0.18 Score=46.59 Aligned_cols=39 Identities=0% Similarity=-0.198 Sum_probs=24.4
Q ss_pred CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccH
Q 011963 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQ 266 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Ptr 266 (474)
|+=.+++.|.| ||||.+. |-.+.+... .+.+++|+-|..
T Consensus 28 G~l~vitG~Mg-sGKTT~l-L~~a~r~~~---------~g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMF-SGKSEEL-IRRVRRTQF---------AKQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTT-SCHHHHH-HHHHHHHHH---------TTCCEEEEECC-
T ss_pred CEEEEEECCCC-CcHHHHH-HHHHHHHHH---------CCCEEEEEEecc
Confidence 33345678889 9999654 333333333 366899999864
No 131
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.90 E-value=0.25 Score=42.20 Aligned_cols=31 Identities=13% Similarity=0.112 Sum_probs=21.1
Q ss_pred eEEeccccccCC--hhHHHHHHhhCCCCCcEEE
Q 011963 333 LLVVDRLDSLSK--GDTLSLIRQSISGKPHTVV 363 (474)
Q Consensus 333 ~lViDEad~ll~--~~~l~~Il~~l~~~~q~ll 363 (474)
.|+|||+|.|.. ...+..++...+.+.++|+
T Consensus 79 ~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~ 111 (145)
T 3n70_A 79 TLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIG 111 (145)
T ss_dssp CEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEE
T ss_pred EEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEE
Confidence 589999999976 5566666655555555444
No 132
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.71 E-value=0.29 Score=47.01 Aligned_cols=17 Identities=12% Similarity=-0.171 Sum_probs=14.5
Q ss_pred CcEEEEcCCCcchhHHHH
Q 011963 218 KDILETSGSSSTIVQIAW 235 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (474)
..+++..|+| +|||...
T Consensus 68 ~~vll~G~~G-tGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPG-TGKTTVA 84 (309)
T ss_dssp CEEEEEECTT-SSHHHHH
T ss_pred ceEEEECCCC-CCHHHHH
Confidence 4799999999 9999643
No 133
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.67 E-value=0.59 Score=42.17 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=21.4
Q ss_pred CcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEE
Q 011963 330 GVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVF 364 (474)
Q Consensus 330 ~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llf 364 (474)
.-.+|||||+|.+.. ...+..++...+....+++.
T Consensus 126 ~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~ 162 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLA 162 (250)
T ss_dssp SSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEE
T ss_pred CceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEE
Confidence 356899999999764 44555555544444434443
No 134
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=92.54 E-value=0.12 Score=60.02 Aligned_cols=65 Identities=12% Similarity=0.065 Sum_probs=47.5
Q ss_pred hHHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHh
Q 011963 207 GIEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (474)
Q Consensus 207 Q~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~ 278 (474)
|.++|..- +++++|.|+-| ||||.+.+--++..+..... ....-+.|+|++|+..|..+.+.+..
T Consensus 15 Q~~~i~~~--~~~~~v~a~AG-SGKT~vl~~ri~~ll~~~~~----~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 15 QWNAIVST--GQDILVAAAAG-SGKTAVLVERMIRKITAEEN----PIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp HHHHHHCC--SSCEEEEECTT-CCHHHHHHHHHHHHHSCSSS----CCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHhCC--CCCEEEEecCC-CcHHHHHHHHHHHHHhcCCC----CCCccceEEEeccHHHHHHHHHHHHH
Confidence 99998754 88999999999 99997765444444433110 01244899999999999988877655
No 135
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=92.50 E-value=0.66 Score=46.07 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=58.4
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+.++||.++|++-+..++..+... ++.+..++|+.+...+. ..+..+..+|||+|. +-..++++.++.
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~~ 336 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE---GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQVS 336 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT---TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTSSCCCTTEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC---CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------ccccCCCccCCC
Confidence 458999999999999999888776 78889999998866553 344566789999995 235788999999
Q ss_pred eEEec
Q 011963 333 LLVVD 337 (474)
Q Consensus 333 ~lViD 337 (474)
++|.-
T Consensus 337 ~Vi~~ 341 (412)
T 3fht_A 337 VVINF 341 (412)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 98853
No 136
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.45 E-value=0.18 Score=45.89 Aligned_cols=39 Identities=3% Similarity=-0.221 Sum_probs=26.6
Q ss_pred cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEecc
Q 011963 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS 265 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Pt 265 (474)
.|+=.++.+|.| |||| ..++-++.+... .+.+++|+.|.
T Consensus 19 ~g~l~fiyG~Mg-sGKT-t~Ll~~i~n~~~---------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMF-SGKS-TELMRRVRRFQI---------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTT-SCHH-HHHHHHHHHHHH---------TTCCEEEEEET
T ss_pred ceEEEEEECCCC-CcHH-HHHHHHHHHHHH---------cCCeEEEEccc
Confidence 466678899999 9999 444444444433 25588888884
No 137
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=92.45 E-value=0.51 Score=47.11 Aligned_cols=73 Identities=21% Similarity=0.304 Sum_probs=57.7
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCc
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l 331 (474)
.+.++||.++|++.+..++..+... |+.+..++|+.+..... ..+..+..+|||||. +-..++++.++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidip~v 345 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE---GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA------VAARGLDISNV 345 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH------HHHTTSCCCCE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC---CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC------hhhcCCCcccC
Confidence 3668999999999999998887765 78899999999865543 344556789999995 22467888889
Q ss_pred ceEEe
Q 011963 332 SLLVV 336 (474)
Q Consensus 332 ~~lVi 336 (474)
.++|.
T Consensus 346 ~~Vi~ 350 (417)
T 2i4i_A 346 KHVIN 350 (417)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88875
No 138
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.36 E-value=0.36 Score=47.80 Aligned_cols=16 Identities=13% Similarity=-0.236 Sum_probs=13.8
Q ss_pred CcEEEEcCCCcchhHHH
Q 011963 218 KDILETSGSSSTIVQIA 234 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (474)
+.+++..|+| +|||..
T Consensus 46 ~~vll~G~~G-~GKT~l 61 (384)
T 2qby_B 46 FSNLFLGLTG-TGKTFV 61 (384)
T ss_dssp CEEEEEECTT-SSHHHH
T ss_pred CcEEEECCCC-CCHHHH
Confidence 4699999999 999954
No 139
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=92.31 E-value=0.56 Score=50.81 Aligned_cols=79 Identities=20% Similarity=0.227 Sum_probs=63.8
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHH---HhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITG---LRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~---l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+.++||.++|+..|..+...+... |+.+..++|+.+....... +..+.++|||||- +-..++++.+++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~---gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlDip~v~ 515 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI---GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLDIPEVS 515 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCCCTTEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc---CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCcccCCCC
Confidence 569999999999999888887765 7888899999876554443 5566799999995 225789999999
Q ss_pred eEEeccccccC
Q 011963 333 LLVVDRLDSLS 343 (474)
Q Consensus 333 ~lViDEad~ll 343 (474)
++|+-++|...
T Consensus 516 lVi~~d~d~~G 526 (661)
T 2d7d_A 516 LVAILDADKEG 526 (661)
T ss_dssp EEEETTTTCCT
T ss_pred EEEEeCccccc
Confidence 99999998754
No 140
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=92.27 E-value=2.5 Score=41.39 Aligned_cols=80 Identities=24% Similarity=0.292 Sum_probs=63.4
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCc
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l 331 (474)
.+..+||++++++-+..++..+... ++.+..++|+.+...+ ...+..+..+|||+|. +-..++++.++
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~ 312 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE---GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPTV 312 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT---TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTTE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCcccC
Confidence 3568999999999999998887765 7888999999886654 3444566789999995 33578999999
Q ss_pred ceEEeccccccC
Q 011963 332 SLLVVDRLDSLS 343 (474)
Q Consensus 332 ~~lViDEad~ll 343 (474)
.++|.-....+.
T Consensus 313 ~~Vi~~~~p~~~ 324 (395)
T 3pey_A 313 SMVVNYDLPTLA 324 (395)
T ss_dssp EEEEESSCCBCT
T ss_pred CEEEEcCCCCCC
Confidence 999987776554
No 141
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.19 E-value=0.66 Score=41.48 Aligned_cols=16 Identities=6% Similarity=-0.137 Sum_probs=14.2
Q ss_pred CcEEEEcCCCcchhHHH
Q 011963 218 KDILETSGSSSTIVQIA 234 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (474)
+.+++..|+| +|||..
T Consensus 55 ~~~~l~G~~G-tGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFG-VGKTYL 70 (202)
T ss_dssp CEEEEECSTT-SSHHHH
T ss_pred CeEEEECCCC-CCHHHH
Confidence 6799999999 999964
No 142
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.97 E-value=0.46 Score=46.67 Aligned_cols=17 Identities=12% Similarity=-0.033 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCcchhHHH
Q 011963 217 AKDILETSGSSSTIVQIA 234 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (474)
+..+++..|.| +|||..
T Consensus 45 ~~~vli~G~~G-~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTG-TGKTAV 61 (386)
T ss_dssp CCCEEEEECTT-SSHHHH
T ss_pred CCeEEEECCCC-CCHHHH
Confidence 46899999999 999954
No 143
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.95 E-value=0.89 Score=46.71 Aligned_cols=17 Identities=6% Similarity=-0.187 Sum_probs=13.1
Q ss_pred CcEEEEcCCCcchhHHHH
Q 011963 218 KDILETSGSSSTIVQIAW 235 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (474)
.=+++++++| +|||...
T Consensus 101 ~vIlivG~~G-~GKTTt~ 117 (443)
T 3dm5_A 101 TILLMVGIQG-SGKTTTV 117 (443)
T ss_dssp EEEEEECCTT-SSHHHHH
T ss_pred eEEEEECcCC-CCHHHHH
Confidence 3577788999 9999654
No 144
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.73 E-value=0.92 Score=42.77 Aligned_cols=17 Identities=6% Similarity=-0.160 Sum_probs=14.3
Q ss_pred CcEEEEcCCCcchhHHHH
Q 011963 218 KDILETSGSSSTIVQIAW 235 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (474)
..+++..|+| +|||...
T Consensus 65 ~~vLl~G~~G-tGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPH-SGKTALA 81 (272)
T ss_dssp EEEEEECSTT-SSHHHHH
T ss_pred eEEEEECCCC-CcHHHHH
Confidence 4789999999 9999643
No 145
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=91.72 E-value=0.37 Score=52.06 Aligned_cols=109 Identities=10% Similarity=0.044 Sum_probs=70.1
Q ss_pred hHHHHHHHhcC--CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCc
Q 011963 207 GIEFWKCYSSA--KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGI 284 (474)
Q Consensus 207 Q~~~i~~~l~g--~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i 284 (474)
|.+++..++.- .-.+++|+-| .|||.+..+-+- .+. ..++|.+||.+=+..++.....
T Consensus 180 Q~~al~~~~~~~~~~~vlta~RG-RGKSa~lG~~~a-~~~------------~~~~vtAP~~~a~~~l~~~~~~------ 239 (671)
T 2zpa_A 180 QQQLLKQLMTMPPGVAAVTAARG-RGKSALAGQLIS-RIA------------GRAIVTAPAKASTDVLAQFAGE------ 239 (671)
T ss_dssp HHHHHHHHTTCCSEEEEEEECTT-SSHHHHHHHHHH-HSS------------SCEEEECSSCCSCHHHHHHHGG------
T ss_pred HHHHHHHHHHhhhCeEEEecCCC-CCHHHHHHHHHH-HHH------------hCcEEECCCHHHHHHHHHHhhC------
Confidence 99999888763 3478899999 999965544333 111 1358889998866544443211
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhCCCCCcEEEE
Q 011963 285 HTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSISGKPHTVVF 364 (474)
Q Consensus 285 ~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l~~~~q~llf 364 (474)
.|=+..|..++. .+...++||||||=.+- .+.+..++... ..++|
T Consensus 240 -----------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp-~pll~~ll~~~----~~v~~ 284 (671)
T 2zpa_A 240 -----------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP-APLLHQLVSRF----PRTLL 284 (671)
T ss_dssp -----------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC-HHHHHHHHTTS----SEEEE
T ss_pred -----------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC-HHHHHHHHhhC----CeEEE
Confidence 122335655432 23347899999996554 77777777643 35788
Q ss_pred EccCCc
Q 011963 365 NDCLTY 370 (474)
Q Consensus 365 SAT~~~ 370 (474)
|.|+..
T Consensus 285 ~tTv~G 290 (671)
T 2zpa_A 285 TTTVQG 290 (671)
T ss_dssp EEEBSS
T ss_pred EecCCc
Confidence 888754
No 146
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=91.59 E-value=1 Score=44.90 Aligned_cols=72 Identities=19% Similarity=0.264 Sum_probs=57.0
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
..++||.++|++-+..++..+... |+.+..++|+.+.... ...+.++...|||+|. +-..++++.++.
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~v~ 346 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA---NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD------VWARGLDVPQVS 346 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT---TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG------GGSSSCCCTTEE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC---CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhCcCCcccCC
Confidence 348999999999999888887765 7888999999886554 3444566789999996 235778999999
Q ss_pred eEEe
Q 011963 333 LLVV 336 (474)
Q Consensus 333 ~lVi 336 (474)
++|.
T Consensus 347 ~Vi~ 350 (410)
T 2j0s_A 347 LIIN 350 (410)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 147
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.32 E-value=0.79 Score=43.98 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=25.5
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEE
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVF 364 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llf 364 (474)
..-.+|||||+|.|.. ...+..++...+....+++.
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~ 146 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILS 146 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEE
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 4567999999999975 66677777765555555543
No 148
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=91.25 E-value=0.9 Score=49.17 Aligned_cols=79 Identities=23% Similarity=0.184 Sum_probs=63.2
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHH---HhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITG---LRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~---l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+.++||.++|+.-|..+...+... |+.+..++|+.+....... +..+.++|||||- +-..++++.+++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~---gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~------~l~~GlDip~v~ 509 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH---GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN------LLREGLDIPEVS 509 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC------CCCTTCCCTTEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc---CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC------hhhcCccCCCCC
Confidence 559999999999999988887765 7888889999876554443 5666799999994 124788999999
Q ss_pred eEEeccccccC
Q 011963 333 LLVVDRLDSLS 343 (474)
Q Consensus 333 ~lViDEad~ll 343 (474)
++|+=++|...
T Consensus 510 lVI~~d~d~~G 520 (664)
T 1c4o_A 510 LVAILDADKEG 520 (664)
T ss_dssp EEEETTTTSCS
T ss_pred EEEEeCCcccC
Confidence 99999988653
No 149
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.19 E-value=0.26 Score=48.83 Aligned_cols=142 Identities=9% Similarity=0.085 Sum_probs=69.5
Q ss_pred HHHHHHhcC----CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe---ccHHHHHHHHHHHHhccc
Q 011963 209 EFWKCYSSA----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV---SSQEKAAKVRSVCKPLKA 281 (474)
Q Consensus 209 ~~i~~~l~g----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~---PtreLa~Qi~~~~~~l~~ 281 (474)
..+..++.| .=+++.+++| +||| +|++-++..+.. .+..++|++ |..+|+..+......+..
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG-~GKT-t~al~ia~~~a~---------~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~ 102 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPS-MGKT-SLMMNMVLSALN---------DDRGVAVFSLEMSAEQLALRALSDLTSINM 102 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTT-SCHH-HHHHHHHHHHHH---------TTCEEEEEESSSCHHHHHHHHHHHHHCCCH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCC-CCHH-HHHHHHHHHHHH---------cCCeEEEEeCCCCHHHHHHHHHHHhhCCCH
Confidence 455555544 3477788999 9999 666666655544 244677775 444444433332222100
Q ss_pred CCcEEEEEecCCCHHH------HHHHHhcCCCcEEE-ECh----HHHHHHHHcCCCCCCCcceEEeccccccCC------
Q 011963 282 FGIHTVSLHPGAAIDH------QITGLRSCEPEFLV-STP----ERLLKLVSLKAIDVSGVSLLVVDRLDSLSK------ 344 (474)
Q Consensus 282 ~~i~v~~~~gg~~~~~------q~~~l~~~~~~IlV-~TP----~rL~~ll~~~~~~l~~l~~lViDEad~ll~------ 344 (474)
..++ .|..+... -...+.. ..|.| .+| ..|...+..-.-...++.+||||-.+.|..
T Consensus 103 ~~l~----~g~Ls~~e~~~l~~a~~~l~~--~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~ 176 (338)
T 4a1f_A 103 HDLE----SGRLDDDQWENLAKCFDHLSQ--KKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKE 176 (338)
T ss_dssp HHHH----HTCCCHHHHHHHHHHHHHHHH--SCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHH
T ss_pred HHHh----cCCCCHHHHHHHHHHHHHHhc--CCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCC
Confidence 0111 12222111 1122333 23444 444 344333322000011588999999998865
Q ss_pred -hhHHHHHHhhCC-----CCCcEEEEEcc
Q 011963 345 -GDTLSLIRQSIS-----GKPHTVVFNDC 367 (474)
Q Consensus 345 -~~~l~~Il~~l~-----~~~q~llfSAT 367 (474)
..++..|.+.|. .++.++++|-.
T Consensus 177 r~~ei~~isr~LK~lAkel~vpVi~lsQl 205 (338)
T 4a1f_A 177 RHEQIAEISRELKTLARELEIPIIALVQL 205 (338)
T ss_dssp CCCCHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHcCCeEEEEEec
Confidence 234444444431 35666666543
No 150
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.17 E-value=1.3 Score=38.20 Aligned_cols=17 Identities=0% Similarity=-0.150 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCcchhHHH
Q 011963 217 AKDILETSGSSSTIVQIA 234 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (474)
...+++..|+| +|||..
T Consensus 43 ~~~vll~G~~G-~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPG-VGKTAI 59 (187)
T ss_dssp SCEEEEESCGG-GCHHHH
T ss_pred CCceEEECCCC-CCHHHH
Confidence 35899999999 999853
No 151
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=91.15 E-value=0.96 Score=44.81 Aligned_cols=72 Identities=14% Similarity=0.196 Sum_probs=57.1
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+.++||++++++-+..++..+..+ |+.+..++|+.+...+ ...+.++...|||+|. +-..++++.++.
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~------~~~~Gidip~~~ 328 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL---GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------LLTRGIDIQAVN 328 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH---TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS------CSSSSCCCTTEE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc---CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccCCCccCCC
Confidence 458999999999999998888776 7889999999886554 3444566789999994 224678898899
Q ss_pred eEEe
Q 011963 333 LLVV 336 (474)
Q Consensus 333 ~lVi 336 (474)
++|.
T Consensus 329 ~Vi~ 332 (400)
T 1s2m_A 329 VVIN 332 (400)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 152
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=91.03 E-value=0.78 Score=46.67 Aligned_cols=70 Identities=14% Similarity=0.216 Sum_probs=56.5
Q ss_pred EEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceE
Q 011963 258 FLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLL 334 (474)
Q Consensus 258 ~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~l 334 (474)
.+||.++|+.-|..++..+... |+.+..++|+.+..... ..+.++.+.|||||. +-..++++.++.++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~~V 372 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK---EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIKHV 372 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT---TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCCEE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC---CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCCEE
Confidence 3999999999999998887765 78899999998866543 344566789999996 33578899999998
Q ss_pred Ee
Q 011963 335 VV 336 (474)
Q Consensus 335 Vi 336 (474)
|.
T Consensus 373 I~ 374 (434)
T 2db3_A 373 IN 374 (434)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 153
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.88 E-value=0.82 Score=44.52 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=25.6
Q ss_pred CcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEE
Q 011963 330 GVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (474)
Q Consensus 330 ~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfS 365 (474)
...+|+|||+|.|.. ...+..++...+....+++.+
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEe
Confidence 457999999999986 666777777666555555543
No 154
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.71 E-value=0.88 Score=43.82 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=18.1
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhh
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQS 354 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~ 354 (474)
..-.+|+|||+|.|.. ...+..++..
T Consensus 89 ~~~~~l~lDEi~~l~~~~~~~L~~~l~~ 116 (324)
T 1hqc_A 89 EEGDILFIDEIHRLSRQAEEHLYPAMED 116 (324)
T ss_dssp CTTCEEEETTTTSCCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCcccccchHHHHHHHHHh
Confidence 3456899999999975 4555555554
No 155
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.54 E-value=0.74 Score=44.77 Aligned_cols=18 Identities=6% Similarity=-0.154 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCcchhHHHH
Q 011963 217 AKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (474)
++.+++..|+| +|||...
T Consensus 152 ~~~lll~G~~G-tGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMG-IGKSYLL 169 (308)
T ss_dssp CCEEEEECSTT-SSHHHHH
T ss_pred CceEEEECCCC-CCHHHHH
Confidence 57999999999 9998543
No 156
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=90.26 E-value=0.93 Score=44.63 Aligned_cols=75 Identities=12% Similarity=0.230 Sum_probs=58.8
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+.++||++++++-+..++..+... |+.+..++|+.+.... ...+.++...|||+|. +-..++++.+++
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~------~~~~Gidi~~~~ 320 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ---NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDIERVN 320 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC------CCSSCBCCTTEE
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC------hhhcCCCcccCC
Confidence 558999999999999998887765 7889999999886554 3444566789999994 224678999999
Q ss_pred eEEeccc
Q 011963 333 LLVVDRL 339 (474)
Q Consensus 333 ~lViDEa 339 (474)
++|.-..
T Consensus 321 ~Vi~~~~ 327 (391)
T 1xti_A 321 IAFNYDM 327 (391)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 9987543
No 157
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=90.22 E-value=0.68 Score=45.00 Aligned_cols=74 Identities=12% Similarity=0.218 Sum_probs=56.7
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCc
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l 331 (474)
.+..+||+++|++-+..+++.+... ++.+..++|+.+..... ..+..+..+|||+|.- -..++++.++
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~~Gid~~~~ 307 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI---GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV------MSRGIDVNDL 307 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT---TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTT------HHHHCCCSCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc---CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECCh------hhcCCCcccC
Confidence 3568999999999999998888766 78899999998865543 3445667899999941 1246788888
Q ss_pred ceEEec
Q 011963 332 SLLVVD 337 (474)
Q Consensus 332 ~~lViD 337 (474)
.++|.-
T Consensus 308 ~~Vi~~ 313 (367)
T 1hv8_A 308 NCVINY 313 (367)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 888864
No 158
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.21 E-value=0.28 Score=48.51 Aligned_cols=15 Identities=7% Similarity=-0.137 Sum_probs=13.4
Q ss_pred cEEEEcCCCcchhHHH
Q 011963 219 DILETSGSSSTIVQIA 234 (474)
Q Consensus 219 dvl~~A~TG~SGKTla 234 (474)
.+++.+|+| +|||..
T Consensus 46 ~~li~G~~G-~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPG-TGKTVT 60 (389)
T ss_dssp EEEEECCTT-SSHHHH
T ss_pred eEEEECCCC-CCHHHH
Confidence 699999999 999964
No 159
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.20 E-value=0.91 Score=47.57 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=58.0
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+..+||.++|+.-+..++..+... |+.+..++|+.+.... ...+..+..+|||||. .-..++++.+++
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~~---g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~------a~~~GiD~p~v~ 306 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQSK---GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV------AFGMGINKPNVR 306 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT------TSCTTTCCTTCC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHC---CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec------hhhCCCCccCcc
Confidence 557899999999999998887765 7889999999886544 3445566799999996 224678999999
Q ss_pred eEEec
Q 011963 333 LLVVD 337 (474)
Q Consensus 333 ~lViD 337 (474)
++|.-
T Consensus 307 ~VI~~ 311 (523)
T 1oyw_A 307 FVVHF 311 (523)
T ss_dssp EEEES
T ss_pred EEEEE
Confidence 99863
No 160
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=90.07 E-value=0.88 Score=48.52 Aligned_cols=72 Identities=21% Similarity=0.234 Sum_probs=57.7
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+..+||.++|+.-+.+++..+... |+.+..++|+.+..... ..+..+..+|||+|- +-..++++.+++
T Consensus 267 ~~~~IVf~~sr~~~e~la~~L~~~---g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~------a~~~GID~p~V~ 337 (591)
T 2v1x_A 267 GQSGIIYCFSQKDSEQVTVSLQNL---GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV------AFGMGIDKPDVR 337 (591)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT------TSCTTCCCSCEE
T ss_pred CCCeEEEeCcHHHHHHHHHHHHHC---CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec------hhhcCCCccccc
Confidence 568999999999999999888765 78999999999866543 344556789999994 224678899999
Q ss_pred eEEe
Q 011963 333 LLVV 336 (474)
Q Consensus 333 ~lVi 336 (474)
++|.
T Consensus 338 ~VI~ 341 (591)
T 2v1x_A 338 FVIH 341 (591)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
No 161
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=89.67 E-value=0.9 Score=42.01 Aligned_cols=96 Identities=7% Similarity=0.021 Sum_probs=51.0
Q ss_pred cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-ccCCcEEEEEecCCC
Q 011963 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-KAFGIHTVSLHPGAA 294 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~~~~i~v~~~~gg~~ 294 (474)
.|.=.+++.|.| ||||.+. +..+.+... .+.+++|+-|...-- +.. ..+ +..|+..
T Consensus 27 ~G~I~vitG~M~-sGKTT~L-lr~~~r~~~---------~g~kvli~kp~~D~R---~~~-~~I~Sr~G~~~-------- 83 (219)
T 3e2i_A 27 SGWIECITGSMF-SGKSEEL-IRRLRRGIY---------AKQKVVVFKPAIDDR---YHK-EKVVSHNGNAI-------- 83 (219)
T ss_dssp CCEEEEEEECTT-SCHHHHH-HHHHHHHHH---------TTCCEEEEEEC---------------CBTTBCC--------
T ss_pred CceEEEEECCCC-CCHHHHH-HHHHHHHHH---------cCCceEEEEeccCCc---chh-hhHHHhcCCce--------
Confidence 344457788999 9999543 444444433 356789998854310 000 011 2222211
Q ss_pred HHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC--hhHHHHHH
Q 011963 295 IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK--GDTLSLIR 352 (474)
Q Consensus 295 ~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~--~~~l~~Il 352 (474)
.-+.|..+.-|++++ .....+|+||||+-+-+ .+.+..+.
T Consensus 84 ------------~a~~v~~~~di~~~i------~~~~dvV~IDEaQFf~~~~v~~l~~la 125 (219)
T 3e2i_A 84 ------------EAINISKASEIMTHD------LTNVDVIGIDEVQFFDDEIVSIVEKLS 125 (219)
T ss_dssp ------------EEEEESSGGGGGGSC------CTTCSEEEECCGGGSCTHHHHHHHHHH
T ss_pred ------------eeEEeCCHHHHHHHH------hcCCCEEEEechhcCCHHHHHHHHHHH
Confidence 224444444443322 24678999999998775 55566665
No 162
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=89.62 E-value=0.86 Score=44.09 Aligned_cols=37 Identities=14% Similarity=0.212 Sum_probs=27.0
Q ss_pred CCcceEEeccccccC-C--hhHHHHHHhhCCCCCcEEEEE
Q 011963 329 SGVSLLVVDRLDSLS-K--GDTLSLIRQSISGKPHTVVFN 365 (474)
Q Consensus 329 ~~l~~lViDEad~ll-~--~~~l~~Il~~l~~~~q~llfS 365 (474)
....+|+|||+|.|. . ...+..++...+.+.++++.+
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 356899999999998 4 666777777666666666643
No 163
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.59 E-value=0.99 Score=43.21 Aligned_cols=36 Identities=14% Similarity=0.161 Sum_probs=25.6
Q ss_pred CcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEE
Q 011963 330 GVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (474)
Q Consensus 330 ~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfS 365 (474)
.-.+|||||+|.|.. ...+..++...+....+++.|
T Consensus 107 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEe
Confidence 367999999999986 556666776655555555544
No 164
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=89.12 E-value=0.066 Score=47.24 Aligned_cols=74 Identities=20% Similarity=0.251 Sum_probs=54.1
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+.++||.++|+..+..+...+... |+.+..++|+.+.... ...+..+.++|||+|. +-..++++.++.
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gid~~~~~ 100 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA---GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD------VAARGIDIPDVS 100 (170)
Confidence 458999999999998888777665 7888899999775543 3344555789999993 123567777788
Q ss_pred eEEecc
Q 011963 333 LLVVDR 338 (474)
Q Consensus 333 ~lViDE 338 (474)
++|.-+
T Consensus 101 ~Vi~~~ 106 (170)
T 2yjt_D 101 HVFNFD 106 (170)
Confidence 777633
No 165
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.28 E-value=2.4 Score=38.65 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=29.2
Q ss_pred cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
.|.-+++.+|+| +|||. +++-++..+.. .+-.++++.- .+-..++...+..+
T Consensus 22 ~G~~~~i~G~~G-sGKTt-l~~~~~~~~~~---------~~~~v~~~~~-e~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPG-TGKTI-FSQQFLWNGLK---------MGEPGIYVAL-EEHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTT-SSHHH-HHHHHHHHHHH---------TTCCEEEEES-SSCHHHHHHHHHTT
T ss_pred CCcEEEEECCCC-CCHHH-HHHHHHHHHHh---------cCCeEEEEEc-cCCHHHHHHHHHHc
Confidence 345788899999 99995 43444433332 1335666653 22334555544433
No 166
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=89.08 E-value=2.9 Score=43.06 Aligned_cols=79 Identities=8% Similarity=-0.025 Sum_probs=56.6
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+...+|++...+-+..+.+.+... +.++..++|+++.... ...+.++.++|||||+..+ ..++++.++.
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~---~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~-----~~GiDip~v~ 418 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNE---YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVF-----STGISVKNLH 418 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT---CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHH-----HHSCCCCSEE
T ss_pred CCCeEEEEecHHHHHHHHHHHHHc---CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChh-----hcccccccCc
Confidence 445666666666666666665554 4588999999886543 3444566789999997665 3578999999
Q ss_pred eEEecccccc
Q 011963 333 LLVVDRLDSL 342 (474)
Q Consensus 333 ~lViDEad~l 342 (474)
++|+..++.-
T Consensus 419 ~vi~~~~~~s 428 (510)
T 2oca_A 419 HVVLAHGVKS 428 (510)
T ss_dssp EEEESSCCCS
T ss_pred EEEEeCCCCC
Confidence 9999888743
No 167
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=88.81 E-value=2 Score=43.01 Aligned_cols=75 Identities=21% Similarity=0.248 Sum_probs=55.5
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEec--------CCCHHH---HHHHHhcCCCcEEEEChHHHHHHHHc
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHP--------GAAIDH---QITGLRSCEPEFLVSTPERLLKLVSL 323 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~g--------g~~~~~---q~~~l~~~~~~IlV~TP~rL~~ll~~ 323 (474)
.+.++||.+++++-+..+++.+... |+.+..++| +.+... ....+..+.+.|||+|. +-.
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~---~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~------~~~ 430 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD---GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS------VGE 430 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT---TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG------GGG
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc---CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC------ccc
Confidence 3668999999999999999888776 788999999 655433 34455666789999994 124
Q ss_pred CCCCCCCcceEEecc
Q 011963 324 KAIDVSGVSLLVVDR 338 (474)
Q Consensus 324 ~~~~l~~l~~lViDE 338 (474)
.++++..+.++|+-+
T Consensus 431 ~Gldl~~~~~Vi~~d 445 (494)
T 1wp9_A 431 EGLDVPEVDLVVFYE 445 (494)
T ss_dssp GGGGSTTCCEEEESS
T ss_pred cCCCchhCCEEEEeC
Confidence 578888888888644
No 168
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.78 E-value=0.79 Score=44.69 Aligned_cols=53 Identities=9% Similarity=0.038 Sum_probs=32.5
Q ss_pred HHHHHHhcC----CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe---ccHHHHHHH
Q 011963 209 EFWKCYSSA----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV---SSQEKAAKV 272 (474)
Q Consensus 209 ~~i~~~l~g----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~---PtreLa~Qi 272 (474)
..+..++.| .=+++++++| +||| +|++-++..+.. .+..++|++ |..+++..+
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG-~GKT-tl~l~ia~~~a~---------~g~~vl~~slE~s~~~l~~R~ 115 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPS-MGKT-AFALKQAKNMSD---------NDDVVNLHSLEMGKKENIKRL 115 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTT-SSHH-HHHHHHHHHHHT---------TTCEEEEEESSSCHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCC-CCHH-HHHHHHHHHHHH---------cCCeEEEEECCCCHHHHHHHH
Confidence 556666643 4578888999 9999 566655544433 134677776 444444433
No 169
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=88.78 E-value=0.51 Score=48.31 Aligned_cols=70 Identities=13% Similarity=0.241 Sum_probs=49.8
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEE
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lV 335 (474)
+.++||++||++-|..++..+... ++++..++|. ........+.++..+|||||. +-..++++. +.++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~---~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT~------v~e~GiDip-v~~VI 245 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA---GKSVVVLNRK-TFEREYPTIKQKKPDFILATD------IAEMGANLC-VERVL 245 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT---TCCEEECCSS-SCC--------CCCSEEEESS------STTCCTTCC-CSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc---CCCEEEecch-hHHHHHhhhcCCCceEEEECC------hhheeeccC-ceEEE
Confidence 458999999999999998887766 7889999984 344455666776899999995 234678888 88877
Q ss_pred e
Q 011963 336 V 336 (474)
Q Consensus 336 i 336 (474)
.
T Consensus 246 ~ 246 (440)
T 1yks_A 246 D 246 (440)
T ss_dssp E
T ss_pred e
Confidence 3
No 170
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=88.74 E-value=2 Score=40.16 Aligned_cols=39 Identities=3% Similarity=-0.225 Sum_probs=25.0
Q ss_pred cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEecc
Q 011963 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS 265 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Pt 265 (474)
.|+=.+++.+.| ||||.+. |-.+.+... .+.+++|+-|.
T Consensus 18 ~g~l~v~~G~Mg-sGKTT~l-L~~~~r~~~---------~g~kvli~kp~ 56 (234)
T 2orv_A 18 RGQIQVILGPMF-SGKSTEL-MRRVRRFQI---------AQYKCLVIKYA 56 (234)
T ss_dssp CCEEEEEECCTT-SCHHHHH-HHHHHHHHT---------TTCCEEEEEET
T ss_pred ceEEEEEECCCC-CcHHHHH-HHHHHHHHH---------CCCeEEEEeec
Confidence 455556678889 9999554 333333322 36688888884
No 171
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.36 E-value=1.3 Score=43.36 Aligned_cols=37 Identities=16% Similarity=0.389 Sum_probs=27.4
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEE
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFN 365 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfS 365 (474)
...+++||||+|.|.. ...+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 4578999999999976 677777777766666555543
No 172
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=88.34 E-value=1.7 Score=42.19 Aligned_cols=16 Identities=13% Similarity=-0.049 Sum_probs=14.1
Q ss_pred CcEEEEcCCCcchhHHH
Q 011963 218 KDILETSGSSSTIVQIA 234 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (474)
..+++..|+| +|||..
T Consensus 56 ~~vll~G~~G-tGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAG-LGKTTL 71 (338)
T ss_dssp CCEEEECSTT-SSHHHH
T ss_pred CeEEEECcCC-CCHHHH
Confidence 4799999999 999964
No 173
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=88.09 E-value=2.8 Score=48.30 Aligned_cols=93 Identities=16% Similarity=0.189 Sum_probs=69.8
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCc
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l 331 (474)
.+.+++|++|+++-+..+++.+..+- .++++..++|+++.... ...+.++.++|||||. +-..++++.++
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~-p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~------v~e~GiDip~v 883 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELV-PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT------IIETGIDIPTA 883 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHC-TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS------TTGGGSCCTTE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhC-CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC------cceeeecccCC
Confidence 36689999999999888888887762 26889999999986554 3445566899999995 33467899999
Q ss_pred ceEEeccccccCChhHHHHHHhhC
Q 011963 332 SLLVVDRLDSLSKGDTLSLIRQSI 355 (474)
Q Consensus 332 ~~lViDEad~ll~~~~l~~Il~~l 355 (474)
.++|+..+|.+. ..++.+.....
T Consensus 884 ~~VIi~~~~~~~-l~~l~Qr~GRv 906 (1151)
T 2eyq_A 884 NTIIIERADHFG-LAQLHQLRGRV 906 (1151)
T ss_dssp EEEEETTTTSSC-HHHHHHHHTTC
T ss_pred cEEEEeCCCCCC-HHHHHHHHhcc
Confidence 999998887643 44455555544
No 174
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=87.93 E-value=0.6 Score=42.49 Aligned_cols=48 Identities=8% Similarity=0.083 Sum_probs=32.9
Q ss_pred CCcceEEecccccc-----CChhHHHHHHhhCCCCCcEEEEEccCCccHHHHH
Q 011963 329 SGVSLLVVDRLDSL-----SKGDTLSLIRQSISGKPHTVVFNDCLTYTSVPAV 376 (474)
Q Consensus 329 ~~l~~lViDEad~l-----l~~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~ 376 (474)
...++||+||+-.. ++.+++..++...|...-+|+.+--.|+++.+.+
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~A 171 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLA 171 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHC
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhC
Confidence 45789999999653 3377777788777776666666666665555544
No 175
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=87.87 E-value=1.8 Score=44.32 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=28.9
Q ss_pred HHHHHHhcC----CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe
Q 011963 209 EFWKCYSSA----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV 263 (474)
Q Consensus 209 ~~i~~~l~g----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~ 263 (474)
..+..++.| .=+++.+++| +||| +|++-++..+... .+..++|++
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG-~GKT-tl~l~ia~~~~~~--------~g~~Vl~~s 239 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPS-VGKT-AFALNIAQNVATK--------TNENVAIFS 239 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTT-SCHH-HHHHHHHHHHHHH--------SSCCEEEEE
T ss_pred HHHHhhcCCCCCCCEEEEECCCC-CCHH-HHHHHHHHHHHHh--------CCCcEEEEE
Confidence 456666643 4577788999 9999 5666666555432 133567765
No 176
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=87.79 E-value=2.5 Score=42.13 Aligned_cols=17 Identities=12% Similarity=0.046 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCcchhHHH
Q 011963 217 AKDILETSGSSSTIVQIA 234 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (474)
++.+|+..|+| +|||..
T Consensus 148 ~~~vLL~GppG-tGKT~l 164 (389)
T 3vfd_A 148 ARGLLLFGPPG-NGKTML 164 (389)
T ss_dssp CSEEEEESSTT-SCHHHH
T ss_pred CceEEEECCCC-CCHHHH
Confidence 57899999999 999964
No 177
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.78 E-value=1.3 Score=41.48 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=15.9
Q ss_pred hcCCcEEEEcCCCcchhHHH
Q 011963 215 SSAKDILETSGSSSTIVQIA 234 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTla 234 (474)
..+..+++..|+| +|||..
T Consensus 27 ~~~~~vll~G~~G-tGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERG-TGKELI 45 (265)
T ss_dssp TSCSCEEEECCTT-SCHHHH
T ss_pred CCCCCEEEECCCC-CcHHHH
Confidence 3457899999999 999963
No 178
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.24 E-value=0.78 Score=47.98 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=24.9
Q ss_pred CcceEEeccccccCC--h---hHHHHHHhhCCCCCcEEEEEccCC
Q 011963 330 GVSLLVVDRLDSLSK--G---DTLSLIRQSISGKPHTVVFNDCLT 369 (474)
Q Consensus 330 ~l~~lViDEad~ll~--~---~~l~~Il~~l~~~~q~llfSAT~~ 369 (474)
.-.+|||||+|.|.. . ..+..++.. ....+++.+++..
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~ 190 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERN 190 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCC
Confidence 356899999999986 3 344444443 3456777777643
No 179
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=87.09 E-value=3.3 Score=42.92 Aligned_cols=87 Identities=9% Similarity=0.083 Sum_probs=54.0
Q ss_pred cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecC---
Q 011963 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPG--- 292 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg--- 292 (474)
.|..+.+..-|| ||||++. ..+... .+..+|||+|+..+|.|+++.+..+.+.. |..+..-
T Consensus 13 ~~~~~~l~g~~g-s~ka~~~-----a~l~~~--------~~~p~lvv~~~~~~A~~l~~~l~~~~~~~--v~~fp~~e~l 76 (483)
T 3hjh_A 13 AGEQRLLGELTG-AACATLV-----AEIAER--------HAGPVVLIAPDMQNALRLHDEISQFTDQM--VMNLADWETL 76 (483)
T ss_dssp TTCEEEEECCCT-THHHHHH-----HHHHHH--------SSSCEEEEESSHHHHHHHHHHHHHTCSSC--EEECCCCCSC
T ss_pred CCCeEEEeCCCc-hHHHHHH-----HHHHHH--------hCCCEEEEeCCHHHHHHHHHHHHhhCCCc--EEEEeCcccc
Confidence 455678888999 9998643 222222 12247999999999999999999884322 3332211
Q ss_pred ----C-C-H---HHH---HHHHhcCCCcEEEEChHHHH
Q 011963 293 ----A-A-I---DHQ---ITGLRSCEPEFLVSTPERLL 318 (474)
Q Consensus 293 ----~-~-~---~~q---~~~l~~~~~~IlV~TP~rL~ 318 (474)
. + . ... ...|......|||+|+..|+
T Consensus 77 pyd~~~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~ 114 (483)
T 3hjh_A 77 PYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLM 114 (483)
T ss_dssp TTCSSCCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHH
T ss_pred cccccCCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHh
Confidence 1 1 0 111 22333445679999987775
No 180
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=85.77 E-value=0.95 Score=44.98 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=48.7
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
..++||++++++-+..++..+... ++.+..++|+.+...+. ..+..+..+|||+|. +-..++++.++.
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~---~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~v~ 350 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHAR---DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD------LLARGIDVQQVS 350 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTT---TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS------SCC--CCGGGCS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhc---CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC------ccccCCCccCCC
Confidence 457999999999999888877654 78888999998865543 344556789999995 223678888888
Q ss_pred eEEe
Q 011963 333 LLVV 336 (474)
Q Consensus 333 ~lVi 336 (474)
++|.
T Consensus 351 ~Vi~ 354 (414)
T 3eiq_A 351 LVIN 354 (414)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 8775
No 181
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=85.71 E-value=4.3 Score=39.58 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=24.1
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEcc
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDC 367 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT 367 (474)
..-.+|||||+|.|.. ...+..++...+.... ++++++
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~-~Il~~~ 157 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK-FLLATT 157 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEE-EEEEES
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceE-EEEEeC
Confidence 4467999999999875 5555566655444443 444444
No 182
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=85.64 E-value=1.8 Score=46.88 Aligned_cols=70 Identities=13% Similarity=0.226 Sum_probs=54.5
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEE
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lV 335 (474)
+.++||++||++-+..++..+... ++++..++|. ........+..+..+|||||- +-..++++. +.++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~---g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd------v~e~GIDip-v~~VI 478 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA---GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD------ISEMGANFG-ASRVI 478 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT---TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG------GGGTTCCCC-CSEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC---CCeEEEeChH-HHHHHHHHHHCCCceEEEECc------hhhcceeeC-CcEEE
Confidence 568999999999999888887665 7889999985 445555666777899999995 234678888 88876
Q ss_pred e
Q 011963 336 V 336 (474)
Q Consensus 336 i 336 (474)
.
T Consensus 479 ~ 479 (673)
T 2wv9_A 479 D 479 (673)
T ss_dssp E
T ss_pred E
Confidence 3
No 183
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=85.55 E-value=2.3 Score=46.02 Aligned_cols=75 Identities=11% Similarity=0.026 Sum_probs=58.3
Q ss_pred EEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHH---HHHHHHhc--CCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 258 FLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAID---HQITGLRS--CEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 258 ~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~---~q~~~l~~--~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
..+|+++|+.-+..+...+... ++.+..+||+.+.. .+...+.. +..+|||||- +-..++++ ++.
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~---g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd------i~e~GlDi-~v~ 391 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIR---GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD------AIGMGLNL-SIR 391 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT---TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG------GGGSSCCC-CBS
T ss_pred CCEEEEcCHHHHHHHHHHHHhc---CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc------HHHCCcCc-Ccc
Confidence 4577799998877777776654 78899999999876 55666666 5789999996 23467889 899
Q ss_pred eEEecccccc
Q 011963 333 LLVVDRLDSL 342 (474)
Q Consensus 333 ~lViDEad~l 342 (474)
++|+-.+.+.
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 9999888664
No 184
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=85.41 E-value=5.9 Score=40.34 Aligned_cols=118 Identities=8% Similarity=0.026 Sum_probs=58.5
Q ss_pred HHHHHHhcC----CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe---ccHHHHHHHHHHHHhccc
Q 011963 209 EFWKCYSSA----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV---SSQEKAAKVRSVCKPLKA 281 (474)
Q Consensus 209 ~~i~~~l~g----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~---PtreLa~Qi~~~~~~l~~ 281 (474)
..+..++.| .=+++.+++| +||| +|++-++..+... .+..++|++ |..+|+..+......+..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg-~GKT-~lal~ia~~~a~~--------~g~~vl~~slE~~~~~l~~R~~~~~~~i~~ 257 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPA-MGKT-AFALTIAQNAALK--------EGVGVGIYSLEMPAAQLTLRMMCSEARIDM 257 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTT-SCHH-HHHHHHHHHHHHT--------TCCCEEEEESSSCHHHHHHHHHHHHTTCCT
T ss_pred HhhhhhcCCcCCCcEEEEEeCCC-CCHH-HHHHHHHHHHHHh--------CCCeEEEEECCCCHHHHHHHHHHHHcCCCH
Confidence 445666543 3567788999 9999 6666666555432 134567765 334444333322222211
Q ss_pred CCcEEEEEecCCCHHH------HHHHHhcCCCcEEEE-----ChHHHHHHHHcCCCCCCCcceEEeccccccC
Q 011963 282 FGIHTVSLHPGAAIDH------QITGLRSCEPEFLVS-----TPERLLKLVSLKAIDVSGVSLLVVDRLDSLS 343 (474)
Q Consensus 282 ~~i~v~~~~gg~~~~~------q~~~l~~~~~~IlV~-----TP~rL~~ll~~~~~~l~~l~~lViDEad~ll 343 (474)
..++ .|..+... ....+.. ..|.|- |++.+...+..-. .-.++++||||..+.|.
T Consensus 258 ~~l~----~g~l~~~~~~~~~~a~~~l~~--~~l~i~d~~~~s~~~l~~~~~~l~-~~~~~~lIvID~l~~~~ 323 (444)
T 2q6t_A 258 NRVR----LGQLTDRDFSRLVDVASRLSE--APIYIDDTPDLTLMEVRARARRLV-SQNQVGLIIIDYLQLMS 323 (444)
T ss_dssp TTCC----GGGCCHHHHHHHHHHHHHHHT--SCEEEECCTTCBHHHHHHHHHHHH-HHSCCCEEEEECGGGCB
T ss_pred HHHh----CCCCCHHHHHHHHHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEcChhhcC
Confidence 1222 22222211 1122333 235543 4455544333200 01247899999999886
No 185
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=85.33 E-value=1.2 Score=45.36 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=52.6
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceE
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLL 334 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~l 334 (474)
+.++||++||++-+..++..+... ++++..++|+ ........+.++..+|||||- +-..++++. +.++
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~---~~~v~~lhg~-~r~~~~~~f~~g~~~vLVaT~------v~e~GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA---GKKVLYLNRK-TFESEYPKCKSEKWDFVITTD------ISEMGANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT---TCCEEEESTT-THHHHTTHHHHSCCSEEEECG------GGGTSCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc---CCeEEEeCCc-cHHHHHHhhcCCCCeEEEECc------hHHcCcccC-CcEE
Confidence 347999999999999998888776 7889999987 344455666777899999995 234677776 6665
No 186
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=85.20 E-value=2.6 Score=43.22 Aligned_cols=21 Identities=5% Similarity=-0.064 Sum_probs=16.0
Q ss_pred HHhcCC--cEEEEcCCCcchhHHH
Q 011963 213 CYSSAK--DILETSGSSSTIVQIA 234 (474)
Q Consensus 213 ~~l~g~--dvl~~A~TG~SGKTla 234 (474)
.+..|+ .+|+..|+| +|||..
T Consensus 44 ~i~~~~~~~vLL~GppG-tGKTtl 66 (447)
T 3pvs_A 44 AIEAGHLHSMILWGPPG-TGKTTL 66 (447)
T ss_dssp HHHHTCCCEEEEECSTT-SSHHHH
T ss_pred HHHcCCCcEEEEECCCC-CcHHHH
Confidence 344444 699999999 999964
No 187
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=84.88 E-value=4.2 Score=39.73 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCcchhHHHH
Q 011963 217 AKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (474)
++.+++..|+| +|||...
T Consensus 70 ~~~vLl~GppG-tGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPG-TGKTAIA 87 (368)
T ss_dssp TCEEEEEESTT-SSHHHHH
T ss_pred CCEEEEECCCC-CCHHHHH
Confidence 35799999999 9999643
No 188
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=84.77 E-value=20 Score=34.44 Aligned_cols=38 Identities=11% Similarity=0.016 Sum_probs=30.5
Q ss_pred HHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 419 ~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
..+..++..+ +....|||.+...|..+...|+..|+.+
T Consensus 194 ~~~~~~L~~~----~~~~aI~~~~d~~a~g~~~al~~~G~~v 231 (350)
T 3h75_A 194 RQAQQLLKRY----PKTQLVWSANDEMALGAMQAARELGRKP 231 (350)
T ss_dssp HHHHHHHHHC----TTEEEEEESSHHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHhC----CCcCEEEECChHHHHHHHHHHHHcCCCC
Confidence 5556666554 3578999999999999999999999873
No 189
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=84.53 E-value=1.2 Score=42.76 Aligned_cols=16 Identities=6% Similarity=-0.234 Sum_probs=13.4
Q ss_pred CcEEEEcCCCcchhHHH
Q 011963 218 KDILETSGSSSTIVQIA 234 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (474)
+-+++..|+| +|||..
T Consensus 37 ~~lLl~GppG-tGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKG-QGKSFQ 52 (293)
T ss_dssp SEEEEEECTT-SCHHHH
T ss_pred eEEEEECCCC-CCHHHH
Confidence 4678999999 999963
No 190
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=84.42 E-value=3.9 Score=40.36 Aligned_cols=18 Identities=17% Similarity=-0.095 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCcchhHHHH
Q 011963 217 AKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (474)
.+.+|+..|+| +|||+..
T Consensus 84 ~~~iLL~GppG-tGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPG-TGKSYLA 101 (355)
T ss_dssp CCCEEEECSTT-SCHHHHH
T ss_pred CceEEEECCCC-CcHHHHH
Confidence 35799999999 9999643
No 191
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=84.01 E-value=3.2 Score=45.64 Aligned_cols=75 Identities=9% Similarity=0.096 Sum_probs=57.8
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhc--------ccCCcEEEEEecCCCHHHHHHHHh--------cCCCcEEEEChHHHHH
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPL--------KAFGIHTVSLHPGAAIDHQITGLR--------SCEPEFLVSTPERLLK 319 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l--------~~~~i~v~~~~gg~~~~~q~~~l~--------~~~~~IlV~TP~rL~~ 319 (474)
+..+||.+|+++-+..+...+... ...++.+..++|+.+...+...+. .+...|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 558999999999999999888752 124889999999999887766553 34578999995
Q ss_pred HHHcCCCCCCCcceEEe
Q 011963 320 LVSLKAIDVSGVSLLVV 336 (474)
Q Consensus 320 ll~~~~~~l~~l~~lVi 336 (474)
+-..++++.++.++|-
T Consensus 378 -iae~GidIp~v~~VId 393 (773)
T 2xau_A 378 -IAETSLTIDGIVYVVD 393 (773)
T ss_dssp -HHHHTCCCTTEEEEEE
T ss_pred -HHHhCcCcCCeEEEEe
Confidence 2235788888887764
No 192
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=83.96 E-value=2.2 Score=43.67 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=53.3
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEE
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lV 335 (474)
+..+||++||++-|.+++..+... |+.+..++|... ......+.++..+|||||- +-..++++.. .++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~---g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~------v~~~GiDip~-~~VI 256 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS---GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD------ISEMGANFRA-GRVI 256 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT---TCCEEEECTTTH-HHHGGGGGSSCCSEEEECG------GGGSSCCCCC-SEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc---CCeEEECCHHHH-HHHHHhhccCCceEEEECC------HHHhCcCCCC-CEEE
Confidence 347999999999999988887665 788888988765 3455666777899999995 3356788888 6655
No 193
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=83.73 E-value=4.6 Score=41.18 Aligned_cols=18 Identities=17% Similarity=-0.130 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCcchhHHHH
Q 011963 217 AKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (474)
.+.+|+..|+| +|||+..
T Consensus 167 ~~~vLL~GppG-tGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPG-TGKSYLA 184 (444)
T ss_dssp CSEEEEECSTT-SSHHHHH
T ss_pred CceEEEECCCC-CCHHHHH
Confidence 46899999999 9999643
No 194
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=83.02 E-value=2.9 Score=43.13 Aligned_cols=75 Identities=16% Similarity=0.282 Sum_probs=46.9
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccC-CcEEEEEec--------CCCHHHH---HHHHhc-CCCcEEEEChHHHHHHHH
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHP--------GAAIDHQ---ITGLRS-CEPEFLVSTPERLLKLVS 322 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~-~i~v~~~~g--------g~~~~~q---~~~l~~-~~~~IlV~TP~rL~~ll~ 322 (474)
+.++||.+++++-+..+...+...... ++++..++| +++...+ ...+.. +.++|||||. +-
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~------~~ 462 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATS------VA 462 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECC------CT
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcc------hh
Confidence 568999999999999999999886322 355555554 5554443 334455 5789999995 22
Q ss_pred cCCCCCCCcceEEe
Q 011963 323 LKAIDVSGVSLLVV 336 (474)
Q Consensus 323 ~~~~~l~~l~~lVi 336 (474)
..++++.++.++|.
T Consensus 463 ~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 463 DEGIDIAECNLVIL 476 (555)
T ss_dssp TCCEETTSCSEEEE
T ss_pred hcCCccccCCEEEE
Confidence 46788888888876
No 195
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=82.83 E-value=6.6 Score=34.95 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=13.4
Q ss_pred CcceEEeccccccCC
Q 011963 330 GVSLLVVDRLDSLSK 344 (474)
Q Consensus 330 ~l~~lViDEad~ll~ 344 (474)
+.++|||||...+++
T Consensus 105 ~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 105 NFALVVVDSITAHYR 119 (220)
T ss_dssp TEEEEEEECCCCCTT
T ss_pred CCCEEEEcCcHHHhh
Confidence 578999999999987
No 196
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=82.43 E-value=7 Score=37.88 Aligned_cols=16 Identities=19% Similarity=0.003 Sum_probs=14.2
Q ss_pred CcEEEEcCCCcchhHHH
Q 011963 218 KDILETSGSSSTIVQIA 234 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (474)
+.+++..|+| +|||+.
T Consensus 46 ~~iLL~GppG-tGKT~l 61 (322)
T 1xwi_A 46 RGILLFGPPG-TGKSYL 61 (322)
T ss_dssp SEEEEESSSS-SCHHHH
T ss_pred ceEEEECCCC-ccHHHH
Confidence 6799999999 999964
No 197
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=82.12 E-value=1 Score=48.47 Aligned_cols=75 Identities=12% Similarity=0.213 Sum_probs=53.3
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhc---ccCCcEEEEEecC--------CCHHHHH---HHHhcCCCcEEEEChHHHHHHH
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPL---KAFGIHTVSLHPG--------AAIDHQI---TGLRSCEPEFLVSTPERLLKLV 321 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l---~~~~i~v~~~~gg--------~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll 321 (474)
+.++||.++|+..+..+.+.+... ...|+++..++|+ ++...+. ..+.++..+|||||- +
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~------~ 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT------V 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC------S
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc------c
Confidence 568999999999999999998874 3338999999998 7766554 444566789999995 2
Q ss_pred HcCCCCCCCcceEEe
Q 011963 322 SLKAIDVSGVSLLVV 336 (474)
Q Consensus 322 ~~~~~~l~~l~~lVi 336 (474)
-..++++.++.++|.
T Consensus 474 ~~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 474 AEEGLDIKECNIVIR 488 (699)
T ss_dssp CCTTSCCCSCCCCEE
T ss_pred cccCCccccCCEEEE
Confidence 246788889998884
No 198
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=82.03 E-value=6 Score=38.23 Aligned_cols=43 Identities=7% Similarity=0.061 Sum_probs=27.5
Q ss_pred CCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCCcc
Q 011963 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTYT 371 (474)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~~~ 371 (474)
...-+++||||||.|.. ...+..++..-|... +++|.++-+..
T Consensus 80 ~~~~kvviIdead~lt~~a~naLLk~LEep~~~t-~fIl~t~~~~k 124 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYA-VIVLNTRRWHY 124 (305)
T ss_dssp SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTE-EEEEEESCGGG
T ss_pred cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCe-EEEEEECChHh
Confidence 35678999999999986 555666666544444 44444454433
No 199
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.01 E-value=13 Score=37.54 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=25.4
Q ss_pred ceEEeccccccCC-------------hhHHHHHHhhC---CCCCcEEEEEccCCcc
Q 011963 332 SLLVVDRLDSLSK-------------GDTLSLIRQSI---SGKPHTVVFNDCLTYT 371 (474)
Q Consensus 332 ~~lViDEad~ll~-------------~~~l~~Il~~l---~~~~q~llfSAT~~~~ 371 (474)
..|.|||+|.++. ...+..++..+ .....++++-||-.++
T Consensus 243 ~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd 298 (405)
T 4b4t_J 243 SIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLD 298 (405)
T ss_dssp EEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSS
T ss_pred ceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChh
Confidence 3678999999975 11233444433 4556778888886655
No 200
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=81.55 E-value=3 Score=39.84 Aligned_cols=71 Identities=15% Similarity=0.248 Sum_probs=52.3
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCc
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l 331 (474)
.+..+||.++|++-+..++..+. .+..++|+.+..... ..+.++..+|||+|. +-..++++.++
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~-------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~------~~~~Gid~~~~ 285 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD-------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD------VASRGLDIPLV 285 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT-------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH------HHHTTCCCCCB
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh-------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC------ccccCCCccCC
Confidence 45689999999999887766544 456788988865543 344566789999995 22467889999
Q ss_pred ceEEecc
Q 011963 332 SLLVVDR 338 (474)
Q Consensus 332 ~~lViDE 338 (474)
.++|.-.
T Consensus 286 ~~Vi~~~ 292 (337)
T 2z0m_A 286 EKVINFD 292 (337)
T ss_dssp SEEEESS
T ss_pred CEEEEec
Confidence 9888643
No 201
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=81.53 E-value=3.5 Score=44.16 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=53.1
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEE
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lV 335 (474)
+.++||.++|++-|..++..+... ++++..++|. ........+.++..+|||||. +-..++++. +.++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~---g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTd------v~~rGiDi~-v~~VI 423 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS---GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTD------ISEMGANFR-AGRVI 423 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT---TCCEEEECTT-THHHHTTHHHHSCCSEEEECG------GGGTTCCCC-CSEEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc---CCcEEEEChH-HHHHHHHhhcCCCcEEEEECc------HHHcCcccC-ceEEE
Confidence 447999999999999998887766 7888899985 444455666676899999996 334677885 88763
No 202
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=81.18 E-value=7.7 Score=36.70 Aligned_cols=97 Identities=6% Similarity=0.026 Sum_probs=63.6
Q ss_pred CCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHH
Q 011963 225 GSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITG 301 (474)
Q Consensus 225 ~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~ 301 (474)
... |||. .+++-++..+.. .+-++||.+.++..+..+...+... .|+.+..++|+++.... +..
T Consensus 92 ~~~-s~K~-~~L~~ll~~~~~---------~~~kvlIFs~~~~~~~~l~~~L~~~--~g~~~~~l~G~~~~~~R~~~i~~ 158 (271)
T 1z5z_A 92 VRR-SGKM-IRTMEIIEEALD---------EGDKIAIFTQFVDMGKIIRNIIEKE--LNTEVPFLYGELSKKERDDIISK 158 (271)
T ss_dssp STT-CHHH-HHHHHHHHHHHH---------TTCCEEEEESCHHHHHHHHHHHHHH--HCSCCCEECTTSCHHHHHHHHHH
T ss_pred ccc-CHHH-HHHHHHHHHHHh---------CCCeEEEEeccHHHHHHHHHHHHHh--cCCcEEEEECCCCHHHHHHHHHH
Confidence 345 7895 445555555443 2558999999999988888877652 26778889999885544 344
Q ss_pred HhcC-CCc-EEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 302 LRSC-EPE-FLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 302 l~~~-~~~-IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
+..+ .+. |||+|- . -..++++..+.++|+=+.+
T Consensus 159 F~~~~~~~v~L~st~-~-----~g~Glnl~~a~~VI~~d~~ 193 (271)
T 1z5z_A 159 FQNNPSVKFIVLSVK-A-----GGFGINLTSANRVIHFDRW 193 (271)
T ss_dssp HHHCTTCCEEEEECC-T-----TCCCCCCTTCSEEEECSCC
T ss_pred hcCCCCCCEEEEehh-h-----hcCCcCcccCCEEEEECCC
Confidence 4553 355 455553 2 1357888888888765443
No 203
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=81.13 E-value=1.9 Score=42.83 Aligned_cols=16 Identities=0% Similarity=-0.149 Sum_probs=13.0
Q ss_pred CcEEE--EcCCCcchhHHH
Q 011963 218 KDILE--TSGSSSTIVQIA 234 (474)
Q Consensus 218 ~dvl~--~A~TG~SGKTla 234 (474)
..+++ ..|.| +|||..
T Consensus 51 ~~~li~i~G~~G-~GKT~L 68 (412)
T 1w5s_A 51 VNMIYGSIGRVG-IGKTTL 68 (412)
T ss_dssp EEEEEECTTCCS-SSHHHH
T ss_pred CEEEEeCcCcCC-CCHHHH
Confidence 46778 89999 999964
No 204
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=81.11 E-value=2.2 Score=42.60 Aligned_cols=72 Identities=7% Similarity=0.101 Sum_probs=54.5
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEE-EEecCCCHHHHHHHHhcCCCcEEEE----ChHHHHHHHHcCCCCCCC
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTV-SLHPGAAIDHQITGLRSCEPEFLVS----TPERLLKLVSLKAIDVSG 330 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~-~~~gg~~~~~q~~~l~~~~~~IlV~----TP~rL~~ll~~~~~~l~~ 330 (474)
+.++||.++|+.-|..++..+... |+.+. .++|. ... ...+.++.++|||| |- +-..++++.+
T Consensus 252 ~~~~lVF~~~~~~~~~l~~~L~~~---~~~~~~~~h~~--~r~-~~~f~~g~~~vLvat~s~T~------~~~~GiDip~ 319 (414)
T 3oiy_A 252 RDGILIFAQTEEEGKELYEYLKRF---KFNVGETWSEF--EKN-FEDFKVGKINILIGVQAYYG------KLTRGVDLPE 319 (414)
T ss_dssp CSSEEEEESSHHHHHHHHHHHHHT---TCCEEESSSCH--HHH-HHHHHTTSCSEEEEECCTTC------CCCCCCCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc---CCceehhhcCc--chH-HHHHhCCCCeEEEEecCcCc------hhhccCcccc
Confidence 358999999999999998887765 77887 66664 333 77777778999999 63 2246789998
Q ss_pred -cceEEeccc
Q 011963 331 -VSLLVVDRL 339 (474)
Q Consensus 331 -l~~lViDEa 339 (474)
+.++|.-..
T Consensus 320 ~v~~VI~~~~ 329 (414)
T 3oiy_A 320 RIKYVIFWGT 329 (414)
T ss_dssp TCCEEEEESC
T ss_pred ccCEEEEECC
Confidence 899886443
No 205
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=80.71 E-value=1.8 Score=43.91 Aligned_cols=45 Identities=9% Similarity=0.161 Sum_probs=33.5
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHH
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAA 270 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~ 270 (474)
....++++.++|| ||||.. +-+++..+.. .+..++|+=|..|+..
T Consensus 51 ~~~~h~~i~G~tG-sGKs~~-~~~li~~~~~---------~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 51 AEPRHLLVNGATG-TGKSVL-LRELAYTGLL---------RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGGCEEEEECTT-SSHHHH-HHHHHHHHHH---------TTCEEEEEEETTHHHH
T ss_pred cCcceEEEECCCC-CCHHHH-HHHHHHHHHH---------CCCcEEEEeCCCchhH
Confidence 3467999999999 999986 4455555554 2557888888888864
No 206
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=79.96 E-value=3.7 Score=43.20 Aligned_cols=18 Identities=0% Similarity=-0.261 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCcchhHHH
Q 011963 216 SAKDILETSGSSSTIVQIA 234 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (474)
.|..+++..|+| +|||..
T Consensus 107 ~g~~vll~Gp~G-tGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPG-VGKTSL 124 (543)
T ss_dssp CSCEEEEESSSS-SSHHHH
T ss_pred CCCEEEEECCCC-CCHHHH
Confidence 467899999999 999964
No 207
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=79.81 E-value=2.3 Score=45.76 Aligned_cols=78 Identities=13% Similarity=0.234 Sum_probs=46.0
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccC-CcEEEEEec--------CCCHHHHHH---HHhc-CCCcEEEEChHHHHHHHH
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAF-GIHTVSLHP--------GAAIDHQIT---GLRS-CEPEFLVSTPERLLKLVS 322 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~-~i~v~~~~g--------g~~~~~q~~---~l~~-~~~~IlV~TP~rL~~ll~ 322 (474)
+.++||.++|++-+..++..+.....+ ++++..++| +.+...+.. .+.. +..+|||||- +-
T Consensus 398 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~------v~ 471 (696)
T 2ykg_A 398 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS------VA 471 (696)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE------SS
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec------hh
Confidence 568999999999999999999886333 477777755 666554433 3344 5789999994 22
Q ss_pred cCCCCCCCcceEEeccc
Q 011963 323 LKAIDVSGVSLLVVDRL 339 (474)
Q Consensus 323 ~~~~~l~~l~~lViDEa 339 (474)
..++++.++.++|.-..
T Consensus 472 ~~GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 472 DEGIDIAQCNLVILYEY 488 (696)
T ss_dssp CCC---CCCSEEEEESC
T ss_pred hcCCcCccCCEEEEeCC
Confidence 46789999999886444
No 208
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=79.20 E-value=6.1 Score=37.78 Aligned_cols=18 Identities=11% Similarity=0.014 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCcchhHHH
Q 011963 216 SAKDILETSGSSSTIVQIA 234 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (474)
.++.+++..|+| +|||+.
T Consensus 48 ~~~~vLL~Gp~G-tGKT~l 65 (301)
T 3cf0_A 48 PSKGVLFYGPPG-CGKTLL 65 (301)
T ss_dssp CCSEEEEECSSS-SSHHHH
T ss_pred CCceEEEECCCC-cCHHHH
Confidence 456799999999 999964
No 209
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=78.96 E-value=5.5 Score=38.69 Aligned_cols=31 Identities=0% Similarity=-0.331 Sum_probs=21.2
Q ss_pred HHHHHHHhcC-----CcEEEEcCCCcchhHHHHHHHHH
Q 011963 208 IEFWKCYSSA-----KDILETSGSSSTIVQIAWIVATA 240 (474)
Q Consensus 208 ~~~i~~~l~g-----~dvl~~A~TG~SGKTlaf~lp~l 240 (474)
...+..++.| .-+++.+|+| +|||. |++-++
T Consensus 93 ~~~LD~~L~GGl~~G~i~~i~G~~G-sGKT~-la~~la 128 (324)
T 2z43_A 93 SQALDGLLAGGIETRTMTEFFGEFG-SGKTQ-LCHQLS 128 (324)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTT-SSHHH-HHHHHH
T ss_pred chhHHHhcCCCCCCCcEEEEECCCC-CCHhH-HHHHHH
Confidence 3556777754 5688899999 99984 433333
No 210
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=78.12 E-value=6.3 Score=38.07 Aligned_cols=18 Identities=17% Similarity=-0.095 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCcchhHHHH
Q 011963 217 AKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (474)
.+.+|+..|+| +|||...
T Consensus 51 ~~~vLl~GppG-tGKT~la 68 (322)
T 3eie_A 51 TSGILLYGPPG-TGKSYLA 68 (322)
T ss_dssp CCEEEEECSSS-SCHHHHH
T ss_pred CCeEEEECCCC-CcHHHHH
Confidence 35799999999 9999643
No 211
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=76.79 E-value=8.3 Score=43.50 Aligned_cols=91 Identities=15% Similarity=0.148 Sum_probs=65.7
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHH---HHHHHhcCC--CcEEEEChHHHHHHHHcCCCCCC
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDH---QITGLRSCE--PEFLVSTPERLLKLVSLKAIDVS 329 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~---q~~~l~~~~--~~IlV~TP~rL~~ll~~~~~~l~ 329 (474)
.+.++||++++++-+..+...+... .|+++..++|+++... ....+..+. ++|||+|. . -..++++.
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~--~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-v-----~~~GlDl~ 573 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRER--EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-I-----GSEGRNFQ 573 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTT--TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-C-----TTCSSCCT
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHH--cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-h-----hhcCCCcc
Confidence 3668999999999998888877642 2889999999987543 345556644 99999993 2 24689999
Q ss_pred CcceEEeccccccCChhHHHHHHhhC
Q 011963 330 GVSLLVVDRLDSLSKGDTLSLIRQSI 355 (474)
Q Consensus 330 ~l~~lViDEad~ll~~~~l~~Il~~l 355 (474)
++.++|+-+.+ .+...+.+.+...
T Consensus 574 ~~~~VI~~d~p--~~~~~~~Q~~GR~ 597 (968)
T 3dmq_A 574 FASHMVMFDLP--FNPDLLEQRIGRL 597 (968)
T ss_dssp TCCEEECSSCC--SSHHHHHHHHHTT
T ss_pred cCcEEEEecCC--CCHHHHHHHhhcc
Confidence 99999987766 3344444444444
No 212
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=76.46 E-value=3.8 Score=42.46 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe
Q 011963 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV 263 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~ 263 (474)
|.=+++.+++| +||| +|++-++..+... .+..++|++
T Consensus 242 G~l~li~G~pG-~GKT-~lal~~a~~~a~~--------~g~~vl~~s 278 (503)
T 1q57_A 242 GEVIMVTSGSG-MVMS-TFVRQQALQWGTA--------MGKKVGLAM 278 (503)
T ss_dssp TCEEEEEESSC-HHHH-HHHHHHHHHHTTT--------SCCCEEEEE
T ss_pred CeEEEEeecCC-CCch-HHHHHHHHHHHHh--------cCCcEEEEe
Confidence 34678889999 9999 5655555444331 144567775
No 213
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=76.44 E-value=4.7 Score=41.80 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=27.0
Q ss_pred ceEEeccccccCC-------------hhHHHHHHhhCCCCCcEEEEEccCCc
Q 011963 332 SLLVVDRLDSLSK-------------GDTLSLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 332 ~~lViDEad~ll~-------------~~~l~~Il~~l~~~~q~llfSAT~~~ 370 (474)
..|+|||+|.|.. ...+..++..+.....++++.||-.+
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 4799999998874 23344555555566678888888665
No 214
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=76.10 E-value=9.8 Score=40.63 Aligned_cols=106 Identities=6% Similarity=-0.051 Sum_probs=61.6
Q ss_pred CCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCc--------hhHHHHHHHHHHHHhhcc
Q 011963 357 GKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASD--------EEKILKGIQVLDHAYGDH 428 (474)
Q Consensus 357 ~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~--------~~K~~~l~~lL~~ll~~~ 428 (474)
....+|++|||+++ ...+...+ +-+...+.++..+. ..+. .++.+... ..-...+...|..++...
T Consensus 374 ~~~~~il~SaTL~p-~~~~~~~l-Gl~~~~~~~~spf~--~~~~--~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~ 447 (620)
T 4a15_A 374 KESKTIHMSGTLDP-FDFYSDIT-GFEIPFKKIGEIFP--PENR--YIAYYDGVSSKYDTLDEKELDRMATVIEDIILKV 447 (620)
T ss_dssp GGSEEEEEESSCCS-HHHHHHHH-CCCCCEEECCCCSC--GGGE--EEEEECCC-------CHHHHHHHHHHHHHHHHHH
T ss_pred hCCeEEEEccCCCc-HHHHHHHh-CCCceeeecCCCCC--HHHe--EEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhC
Confidence 45679999999997 55554444 32233555554322 2222 22222211 111234556666666543
Q ss_pred CCCCCCcEEEEEccchhHHHHHHHHhhCCCcc-----cchHHHHHHHhh
Q 011963 429 FHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI-----STGSNCIVSHIK 472 (474)
Q Consensus 429 ~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v-----~~~r~~~i~~Fk 472 (474)
++.+|||++|....+.++..|...+.+- ...++..++.|+
T Consensus 448 ----~g~~lvlF~Sy~~l~~v~~~l~~~~~~~~q~~~~~~~~~ll~~f~ 492 (620)
T 4a15_A 448 ----KKNTIVYFPSYSLMDRVENRVSFEHMKEYRGIDQKELYSMLKKFR 492 (620)
T ss_dssp ----CSCEEEEESCHHHHHHHTSSCCSCCEECCTTCCSHHHHHHHHHHT
T ss_pred ----CCCEEEEeCCHHHHHHHHHHHHhcchhccCCCChhHHHHHHHHhc
Confidence 5789999999999999999987322220 124567788885
No 215
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=76.07 E-value=3.2 Score=47.38 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=55.0
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEC---hHHHHHHHHcCCCCCCCc-
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVST---PERLLKLVSLKAIDVSGV- 331 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~T---P~rL~~ll~~~~~~l~~l- 331 (474)
+.++||.++|+.-|..++..+... +++..++|+.. .....+..+..+||||| ..- -..++|+.+|
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~----~~v~~lhg~~~--~~l~~F~~G~~~VLVaTas~Tdv-----~~rGIDip~VI 343 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK----FRIGIVTATKK--GDYEKFVEGEIDHLIGTAHYYGT-----LVRGLDLPERI 343 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS----SCEEECTTSSS--HHHHHHHHTSCSEEEEECC-----------CCSCCTTTC
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc----cCeeEEeccHH--HHHHHHHcCCCcEEEEecCCCCe-----eEeccccCCcc
Confidence 567999999999988887765554 78999999974 44566777789999994 222 2468999995
Q ss_pred ceEEecccc
Q 011963 332 SLLVVDRLD 340 (474)
Q Consensus 332 ~~lViDEad 340 (474)
+++|.-.+.
T Consensus 344 ~~VI~~~~P 352 (1054)
T 1gku_B 344 RFAVFVGCP 352 (1054)
T ss_dssp CEEEEESCC
T ss_pred cEEEEeCCC
Confidence 999877666
No 216
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.45 E-value=17 Score=37.00 Aligned_cols=16 Identities=19% Similarity=0.069 Sum_probs=14.2
Q ss_pred CcEEEEcCCCcchhHHH
Q 011963 218 KDILETSGSSSTIVQIA 234 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (474)
+-+|...|.| +|||+.
T Consensus 216 rGvLL~GPPG-tGKTll 231 (437)
T 4b4t_L 216 KGVLLYGPPG-TGKTLL 231 (437)
T ss_dssp CEEEEESCTT-SSHHHH
T ss_pred CeEEEECCCC-CcHHHH
Confidence 6789999999 999974
No 217
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=75.28 E-value=2.9 Score=45.14 Aligned_cols=67 Identities=16% Similarity=0.246 Sum_probs=50.3
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceE
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLL 334 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~l 334 (474)
.+.++||++||++-+..++..+... ++.+..++|+.+... ..+++.+|||||. .+ ..++++. ++++
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~---g~~v~~lHG~l~q~e----r~~~~~~VLVATd-----Va-erGIDId-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL---GINAVAYYRGLDVSV----IPTIGDVVVVATD-----AL-MTGYTGD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT---TCCEEEECTTSCGGG----SCSSSCEEEEECT-----TH-HHHCCCC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC---CCcEEEecCCCCHHH----HHhCCCcEEEECC-----hH-HccCCCC-CcEE
Confidence 3568999999999999988887765 789999999988653 2334679999995 12 2345664 7776
Q ss_pred E
Q 011963 335 V 335 (474)
Q Consensus 335 V 335 (474)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 218
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=74.98 E-value=5.3 Score=41.19 Aligned_cols=77 Identities=14% Similarity=0.262 Sum_probs=34.3
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccC---------CcEEEEEecCCCHHHH---HHHHhc-CCCcEEEEChHHHHHHH
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAF---------GIHTVSLHPGAAIDHQ---ITGLRS-CEPEFLVSTPERLLKLV 321 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~---------~i~v~~~~gg~~~~~q---~~~l~~-~~~~IlV~TP~rL~~ll 321 (474)
.+.++||.++++.-+..+.+.+.....+ |.....++|+++..++ ...+.. +.++|||||- +
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~------~ 462 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS------V 462 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-------
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC------c
Confidence 3669999999999999999998775211 3333344556655443 334445 5789999994 2
Q ss_pred HcCCCCCCCcceEEec
Q 011963 322 SLKAIDVSGVSLLVVD 337 (474)
Q Consensus 322 ~~~~~~l~~l~~lViD 337 (474)
-..++++.++.++|.=
T Consensus 463 ~~~GiDip~v~~VI~~ 478 (556)
T 4a2p_A 463 ADEGIDIVQCNLVVLY 478 (556)
T ss_dssp ----------CEEEEE
T ss_pred hhcCCCchhCCEEEEe
Confidence 2467888888888863
No 219
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=74.41 E-value=0.63 Score=47.79 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=0.0
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
..++||.+||+.-+..++..+... ++.+..++|+.+.... ...+..+..+|||||. +-..++++.++.
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~---~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~------~~~~GlDip~v~ 403 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE---GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQVS 403 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC---CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc------ccccCCccccCC
Confidence 457999999999988888777655 7788889999875544 3344556789999994 224678888888
Q ss_pred eEE
Q 011963 333 LLV 335 (474)
Q Consensus 333 ~lV 335 (474)
++|
T Consensus 404 ~VI 406 (479)
T 3fmp_B 404 VVI 406 (479)
T ss_dssp ---
T ss_pred EEE
Confidence 876
No 220
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=73.80 E-value=56 Score=30.18 Aligned_cols=37 Identities=8% Similarity=0.013 Sum_probs=30.2
Q ss_pred HHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCc
Q 011963 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (474)
Q Consensus 419 ~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~ 459 (474)
..+..++..+ +.+..|||.+...|..+...|...|+.
T Consensus 176 ~~~~~~l~~~----~~~~ai~~~~d~~a~g~~~al~~~g~~ 212 (305)
T 3g1w_A 176 RVAHQLLEDY----PNLAGIFATEANGGVGVGDAVRLESRA 212 (305)
T ss_dssp HHHHHHHHHC----TTEEEEEESSHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHhC----CCceEEEECCCcchhhHHHHHHhcCCC
Confidence 5566666554 368899999999999999999999985
No 221
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=73.28 E-value=5.8 Score=43.61 Aligned_cols=77 Identities=14% Similarity=0.239 Sum_probs=37.8
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhccc---------CCcEEEEEecCCCHHHHH---HHHhc-CCCcEEEEChHHHHHHH
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKA---------FGIHTVSLHPGAAIDHQI---TGLRS-CEPEFLVSTPERLLKLV 321 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~---------~~i~v~~~~gg~~~~~q~---~~l~~-~~~~IlV~TP~rL~~ll 321 (474)
.+.++||.++++..+..+.+.+..... .|..+..++|+++...+. ..+.. +.++|||||- +
T Consensus 630 ~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~------~ 703 (797)
T 4a2q_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS------V 703 (797)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEEC------C
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcC------c
Confidence 356999999999999999999987421 144444556666655443 34455 6789999994 1
Q ss_pred HcCCCCCCCcceEEec
Q 011963 322 SLKAIDVSGVSLLVVD 337 (474)
Q Consensus 322 ~~~~~~l~~l~~lViD 337 (474)
-..++++..+.++|.=
T Consensus 704 ~~~GIDlp~v~~VI~y 719 (797)
T 4a2q_A 704 ADEGIDIVQCNLVVLY 719 (797)
T ss_dssp -------CCCSEEEEE
T ss_pred hhcCCCchhCCEEEEe
Confidence 2357888888888863
No 222
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=72.97 E-value=11 Score=41.09 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=17.1
Q ss_pred ceEEeccccccCC--hhHHHHHHhh
Q 011963 332 SLLVVDRLDSLSK--GDTLSLIRQS 354 (474)
Q Consensus 332 ~~lViDEad~ll~--~~~l~~Il~~ 354 (474)
.+|+|||+|.+-. ...+..++..
T Consensus 581 ~vl~lDEi~~~~~~~~~~Ll~~le~ 605 (758)
T 3pxi_A 581 SVVLLDAIEKAHPDVFNILLQVLED 605 (758)
T ss_dssp SEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred eEEEEeCccccCHHHHHHHHHHhcc
Confidence 3899999999875 5666666654
No 223
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.82 E-value=15 Score=37.46 Aligned_cols=16 Identities=19% Similarity=0.005 Sum_probs=14.2
Q ss_pred CcEEEEcCCCcchhHHH
Q 011963 218 KDILETSGSSSTIVQIA 234 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (474)
+.+|...|.| +|||+.
T Consensus 216 rGvLLyGPPG-TGKTll 231 (434)
T 4b4t_M 216 KGALMYGPPG-TGKTLL 231 (434)
T ss_dssp CEEEEESCTT-SSHHHH
T ss_pred CeeEEECcCC-CCHHHH
Confidence 5789999999 999964
No 224
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=71.89 E-value=1.4 Score=45.94 Aligned_cols=74 Identities=20% Similarity=0.195 Sum_probs=49.2
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHH---HHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDH---QITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~---q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+.++||+++++.-|..++..+... ++.+..++|+.+... ....+..+..+|||||- +-..++++.++.
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~~---~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~------~l~~GiDip~v~ 427 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTAD---GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN------VIARGIDVSQVN 427 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTTT---TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----------CCCTTCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC------hhhcCCCccCCC
Confidence 458999999999998888777654 778888999876432 34555666789999995 234678999999
Q ss_pred eEEecc
Q 011963 333 LLVVDR 338 (474)
Q Consensus 333 ~lViDE 338 (474)
++|...
T Consensus 428 ~VI~~~ 433 (508)
T 3fho_A 428 LVVNYD 433 (508)
T ss_dssp EEEC--
T ss_pred EEEEEC
Confidence 988543
No 225
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=71.82 E-value=19 Score=40.84 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=54.5
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcc--------c-CCcEEEEEecCC---------------------CH---------
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLK--------A-FGIHTVSLHPGA---------------------AI--------- 295 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~--------~-~~i~v~~~~gg~---------------------~~--------- 295 (474)
.+..+||+|++++-|..++..+..+. . .++++.+++.|. +.
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~ 615 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAA 615 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHH
Confidence 35689999999999999999998873 1 246665555432 10
Q ss_pred -----------------------HHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEec
Q 011963 296 -----------------------DHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVD 337 (474)
Q Consensus 296 -----------------------~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViD 337 (474)
......++.+.++|||+|- +-..++|...|..|.+|
T Consensus 616 I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd------~lltGfDiP~l~tlylD 674 (1038)
T 2w00_A 616 IREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVG------MFLTGFDAPTLNTLFVD 674 (1038)
T ss_dssp HHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESS------TTSSSCCCTTEEEEEEE
T ss_pred HHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcc------hHHhCcCcccccEEEEc
Confidence 1112345566799999994 22478999999999988
No 226
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.57 E-value=34 Score=34.81 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=14.2
Q ss_pred CcEEEEcCCCcchhHHH
Q 011963 218 KDILETSGSSSTIVQIA 234 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (474)
+.+|...|.| +|||+.
T Consensus 217 rGvLLyGPPG-TGKTlL 232 (437)
T 4b4t_I 217 KGVILYGAPG-TGKTLL 232 (437)
T ss_dssp SEEEEESSTT-TTHHHH
T ss_pred CCCceECCCC-chHHHH
Confidence 6789999999 999974
No 227
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=71.31 E-value=20 Score=37.42 Aligned_cols=103 Identities=9% Similarity=-0.058 Sum_probs=58.6
Q ss_pred CCCC-CcEEEEEccCCccHHHHHHHhhcCC-ceE-----EEccCCcccccCCcEEEEEEcCC-c--------hhHHHHHH
Q 011963 355 ISGK-PHTVVFNDCLTYTSVPAVQNLLLGS-INR-----LSLNQSVASQSACIIQSVNVCAS-D--------EEKILKGI 418 (474)
Q Consensus 355 l~~~-~q~llfSAT~~~~v~~l~~~~l~~p-~~~-----v~v~~~~~~~~~~i~q~~~~~~~-~--------~~K~~~l~ 418 (474)
+... ..+|++|||+++ ...+... ++-+ ... +.++... -.+..++++. . ..-...+.
T Consensus 311 ~~~~~~svIltSaTL~~-~~~~~~~-lGl~~~~~~~~~~~~~~spf------~~~~~l~v~~~~~~~~~~r~~~~~~~l~ 382 (551)
T 3crv_A 311 LNDNELSIILMSGTLPP-REYMEKV-WGIKRNMLYLDVEREIQKRV------SGSYECYIGVDVTSKYDMRSDNMWKRYA 382 (551)
T ss_dssp GGCTTCEEEEEESSCCC-HHHHHHT-SCCCSCEEEEEHHHHTTSCC------SCEEEEEEECSCCCCTTTCCHHHHHHHH
T ss_pred HhccCceEEEEeeCCCc-HHHHHHH-hCCCCccccccceeecCCcC------CCceEEEEeCCCCCccccCCHHHHHHHH
Confidence 3444 789999999998 4444444 3332 211 1122211 1222222211 1 11235566
Q ss_pred HHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcccc-----hHHHHHHHhh
Q 011963 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIST-----GSNCIVSHIK 472 (474)
Q Consensus 419 ~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~~-----~r~~~i~~Fk 472 (474)
..|..++... ++.+|||++|....+.++.. .++++.. .+...++.|+
T Consensus 383 ~~i~~l~~~~----~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~~~~~~~~~ 434 (551)
T 3crv_A 383 DYLLKIYFQA----KANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSSVEDLYSAIS 434 (551)
T ss_dssp HHHHHHHHHC----SSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCCHHHHHHHTT
T ss_pred HHHHHHHHhC----CCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCCHHHHHHHHH
Confidence 6777766543 57999999999999999973 4565542 2456677774
No 228
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=71.29 E-value=35 Score=30.09 Aligned_cols=67 Identities=7% Similarity=-0.106 Sum_probs=18.4
Q ss_pred HHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhh---hcCCCCCCcEEEEEeccHHHHHHHHHHHHhc
Q 011963 212 KCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKE---KEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL 279 (474)
Q Consensus 212 ~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~---~~~~~~~~~~alil~PtreLa~Qi~~~~~~l 279 (474)
++.+.|-.+-+.+..| -|=|+.+.+|+...-..... .......+.++|||-........+...+..+
T Consensus 15 ~~~~hgG~i~v~S~~g-~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~ 84 (206)
T 3mm4_A 15 PRGSHMASTDSESETR-VKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM 84 (206)
T ss_dssp C----------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT
T ss_pred cccccCCceeeeccCC-CcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 5567888888999999 89999999997543222111 1111124567788877777766666666555
No 229
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=71.19 E-value=2.7 Score=43.10 Aligned_cols=69 Identities=13% Similarity=0.234 Sum_probs=49.1
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEE
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lV 335 (474)
+.++||.+||++-|..++..+... ++.+..++|.. .......+..+..+|||||- +-..++++.. .++|
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~---g~~v~~lh~~~-R~~~~~~f~~g~~~iLVaT~------v~~~GiDip~-~~VI 258 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA---GKKVIQLNRKS-YDTEYPKCKNGDWDFVITTD------ISEMGANFGA-SRVI 258 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT---TCCEEEESTTC-CCCCGGGSSSCCCSEEEESS------CC---CCCSC-SEEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc---CCcEEecCHHH-HHHHHhhccCCCceEEEECC------hHHhCeecCC-CEEE
Confidence 447999999999999998887776 78888898862 22234445566789999995 2235778887 6555
No 230
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=70.72 E-value=64 Score=29.50 Aligned_cols=41 Identities=10% Similarity=-0.065 Sum_probs=30.3
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCc
Q 011963 418 IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (474)
Q Consensus 418 ~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~ 459 (474)
+..+..++..+. ....+..|||.+...|..+...|...|+.
T Consensus 176 ~~~~~~~l~~~~-~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 216 (291)
T 3l49_A 176 YSNVTDMLTKYP-NEGDVGAIWACWDVPMIGATQALQAAGRT 216 (291)
T ss_dssp HHHHHHHHHHCC-STTSCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCC-CcCCcCEEEECCCchHHHHHHHHHHcCCC
Confidence 355666665542 00167899999999999999999999984
No 231
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=70.31 E-value=6.4 Score=35.68 Aligned_cols=26 Identities=4% Similarity=-0.371 Sum_probs=18.2
Q ss_pred HHHHHHhc-----CCcEEEEcCCCcchhHHHH
Q 011963 209 EFWKCYSS-----AKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 209 ~~i~~~l~-----g~dvl~~A~TG~SGKTlaf 235 (474)
..+..++. |.-+++.+|+| +|||...
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~G-sGKTtl~ 41 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFR-TGKTQIC 41 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTT-SSHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCC-CcHHHHH
Confidence 44555554 35678889999 9999543
No 232
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=70.11 E-value=4.3 Score=36.43 Aligned_cols=117 Identities=7% Similarity=0.036 Sum_probs=68.0
Q ss_pred hHHHHHHHhcCC-c-EEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCc
Q 011963 207 GIEFWKCYSSAK-D-ILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGI 284 (474)
Q Consensus 207 Q~~~i~~~l~g~-d-vl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i 284 (474)
|..++..++..+ - .++.++-| +++|-..+--++..... .|-++.||+|+..-.....+.. ++
T Consensus 39 ~~~a~~~l~~s~~~~~iv~g~gg-s~~~~~~~a~L~~~a~~---------~Gr~V~vLAp~~~s~~~l~~~~------~l 102 (189)
T 2l8b_A 39 YSDAVSVLAQDRPSLAIVSGQGG-AAGQRERVAELVMMARE---------QGREVQIIAADRRSQMNMKQDE------RL 102 (189)
T ss_dssp HHHHHHHHHHHSCCEECCBCSSC-SHHHHHHHHHHHHHHHH---------TTCCEEEECSTTHHHHHHSCTT------TC
T ss_pred chhHHHHHhccCCceEEEecccc-hHHHHHHHHHHHHHHHh---------cCeEEEEEcCchHHHHHHHhhc------Cc
Confidence 888888887665 3 44455666 99998764444322222 4779999999877654333211 11
Q ss_pred EEEEEecCCCHHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCChhHHHHHHhhC-CCCCcEEE
Q 011963 285 HTVSLHPGAAIDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI-SGKPHTVV 363 (474)
Q Consensus 285 ~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~~~~l~~Il~~l-~~~~q~ll 363 (474)
...++.. .++......|..=++||||||-.|. ..++..++... ..+.|+|+
T Consensus 103 ~~~t~t~---------------------------~~ll~~~~~~tp~s~lIVD~AekLS-~kE~~~Lld~A~~~naqvvl 154 (189)
T 2l8b_A 103 SGELITG---------------------------RRQLLEGMAFTPGSTVIVDQGEKLS-LKETLTLLDGAARHNVQVLI 154 (189)
T ss_dssp SSCSSST---------------------------TTTTTTSCCCCCCCEEEEEESSSHH-HHHHHHHHHHHHHTTCCEEE
T ss_pred Ccceeeh---------------------------hhhhcCCCCCCCCCEEEEechhhcC-HHHHHHHHHHHHhcCCEEEE
Confidence 1111100 1112223333445589999999887 55555555443 46688887
Q ss_pred EEcc
Q 011963 364 FNDC 367 (474)
Q Consensus 364 fSAT 367 (474)
+--+
T Consensus 155 l~~~ 158 (189)
T 2l8b_A 155 TDSG 158 (189)
T ss_dssp EESS
T ss_pred eCCc
Confidence 7554
No 233
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=70.09 E-value=12 Score=40.26 Aligned_cols=75 Identities=12% Similarity=0.118 Sum_probs=54.6
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhc-cc--------------------------------CCcEEEEEecCCCHHHHHHH-
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPL-KA--------------------------------FGIHTVSLHPGAAIDHQITG- 301 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l-~~--------------------------------~~i~v~~~~gg~~~~~q~~~- 301 (474)
+..+||.+||+.-+..+...+... .. ....+..++||.+...+...
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 558999999999999998888763 11 01347889999987665433
Q ss_pred --HhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEe
Q 011963 302 --LRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVV 336 (474)
Q Consensus 302 --l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lVi 336 (474)
+..+...|||||. +-..++++..+.++|-
T Consensus 332 ~~f~~g~~~vlvaT~------~l~~Gidip~~~~VI~ 362 (715)
T 2va8_A 332 EGFRQRKIKVIVATP------TLAAGVNLPARTVIIG 362 (715)
T ss_dssp HHHHTTCSCEEEECG------GGGGSSCCCBSEEEEC
T ss_pred HHHHcCCCeEEEECh------HHhcccCCCceEEEEe
Confidence 3456789999995 2246788888877553
No 234
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=68.75 E-value=8.6 Score=46.64 Aligned_cols=48 Identities=10% Similarity=-0.053 Sum_probs=31.9
Q ss_pred hHHHHHHHhc------CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEecc
Q 011963 207 GIEFWKCYSS------AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS 265 (474)
Q Consensus 207 Q~~~i~~~l~------g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Pt 265 (474)
....+..++. |+.+++..|+| +|||.... .++..... ++.+++|+..-
T Consensus 1411 G~~~LD~lLG~GGi~~g~~vll~GppG-tGKT~LA~-ala~ea~~---------~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1411 GSLSLDIALGAGGLPMGRIVEIYGPES-SGKTTLTL-QVIAAAQR---------EGKTCAFIDAE 1464 (2050)
T ss_dssp SCHHHHHHHSSSSEETTSEEEEECCTT-SSHHHHHH-HHHHHHHT---------TTCCEEEECTT
T ss_pred CCHHHHHhcCCCCccCCeEEEEECCCC-CCHHHHHH-HHHHHHHH---------cCCcEEEEEcc
Confidence 3445777777 57999999999 99996443 23322222 36678888754
No 235
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=68.08 E-value=21 Score=37.39 Aligned_cols=93 Identities=12% Similarity=0.137 Sum_probs=60.1
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhccc-----CCcEEEEEecCCCH--HHHHHHHhcCCCc---EEEEChHHHHHHHHcC
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKA-----FGIHTVSLHPGAAI--DHQITGLRSCEPE---FLVSTPERLLKLVSLK 324 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~-----~~i~v~~~~gg~~~--~~q~~~l~~~~~~---IlV~TP~rL~~ll~~~ 324 (474)
.+.++||++++++-|..++..+..+.. .+-.+..++|..+. ......+.++..+ |||+|- +-..
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~------~l~~ 511 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ------LLTT 511 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS------TTTT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC------hhhc
Confidence 356999999999999999999987621 23336677887653 2334555553333 777763 1246
Q ss_pred CCCCCCcceEEeccccccCChhHHHHHHhhC
Q 011963 325 AIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI 355 (474)
Q Consensus 325 ~~~l~~l~~lViDEad~ll~~~~l~~Il~~l 355 (474)
++++.++.++|++.. ......+.+.+...
T Consensus 512 GiDip~v~~Vi~~~~--~~s~~~~~Q~iGR~ 540 (590)
T 3h1t_A 512 GVDAPTCKNVVLARV--VNSMSEFKQIVGRG 540 (590)
T ss_dssp TCCCTTEEEEEEESC--CCCHHHHHHHHTTS
T ss_pred CccchheeEEEEEec--CCChHHHHHHHhhh
Confidence 789999999998554 22344444444443
No 236
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=67.93 E-value=6.7 Score=44.94 Aligned_cols=74 Identities=8% Similarity=0.105 Sum_probs=58.4
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEE-EEecCCCHHHHHHHHhcCCCcEEEE----ChHHHHHHHHcCCCCCCC
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTV-SLHPGAAIDHQITGLRSCEPEFLVS----TPERLLKLVSLKAIDVSG 330 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~-~~~gg~~~~~q~~~l~~~~~~IlV~----TP~rL~~ll~~~~~~l~~ 330 (474)
+.++||.+||++-|..++..+... |+.+. .++|. ... ...+.++..+|||| |- +-..++|+.+
T Consensus 309 ~~~~LVF~~s~~~a~~l~~~L~~~---g~~~~~~lhg~--rr~-l~~F~~G~~~VLVatas~Td------vlarGIDip~ 376 (1104)
T 4ddu_A 309 RDGILIFAQTEEEGKELYEYLKRF---KFNVGETWSEF--EKN-FEDFKVGKINILIGVQAYYG------KLTRGVDLPE 376 (1104)
T ss_dssp CSSEEEEESSSHHHHHHHHHHHHT---TCCEEESSSSH--HHH-HHHHHHTSCSEEEEETTTHH------HHCCSCCCTT
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC---CCCeeeEecCc--HHH-HHHHHCCCCCEEEEecCCCC------eeEecCcCCC
Confidence 358999999999999988887765 78887 77773 334 77777878999999 63 2357899999
Q ss_pred -cceEEeccccc
Q 011963 331 -VSLLVVDRLDS 341 (474)
Q Consensus 331 -l~~lViDEad~ 341 (474)
|+++|.=..-.
T Consensus 377 ~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 377 RIKYVIFWGTPS 388 (1104)
T ss_dssp TCCEEEEESCCE
T ss_pred CCCEEEEECCCC
Confidence 99999877665
No 237
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=67.85 E-value=5.7 Score=30.02 Aligned_cols=27 Identities=15% Similarity=0.068 Sum_probs=25.2
Q ss_pred CCcEEEEEccchhHHHHHHHHhhCCCc
Q 011963 433 PLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (474)
Q Consensus 433 ~~k~LVF~~s~~~a~~l~~~L~~~gi~ 459 (474)
..+++|||.+-.++...+..|...||.
T Consensus 41 ~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 41 NDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred CCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 679999999999999999999999996
No 238
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.71 E-value=29 Score=35.14 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=14.0
Q ss_pred CcEEEEcCCCcchhHHH
Q 011963 218 KDILETSGSSSTIVQIA 234 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (474)
+-+|...|.| +|||+.
T Consensus 207 rGiLL~GPPG-tGKT~l 222 (428)
T 4b4t_K 207 RGVLLYGPPG-TGKTML 222 (428)
T ss_dssp CEEEEESCTT-TTHHHH
T ss_pred ceEEEECCCC-CCHHHH
Confidence 5689999999 999964
No 239
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=67.56 E-value=36 Score=32.44 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=23.9
Q ss_pred CCcceEEeccccccCC-hhHHHHHHhhCC---CCCcEEEEEccCC
Q 011963 329 SGVSLLVVDRLDSLSK-GDTLSLIRQSIS---GKPHTVVFNDCLT 369 (474)
Q Consensus 329 ~~l~~lViDEad~ll~-~~~l~~Il~~l~---~~~q~llfSAT~~ 369 (474)
.+.+++|||-+-+... ...+..+...+. ...-+++++||..
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~ 225 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK 225 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC
Confidence 5568999997665543 444555554443 2222677777754
No 240
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=67.44 E-value=6.2 Score=43.05 Aligned_cols=17 Identities=12% Similarity=-0.083 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCcchhHHH
Q 011963 217 AKDILETSGSSSTIVQIA 234 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (474)
+.+++++.|+| +|||..
T Consensus 207 ~~~vlL~G~~G-tGKT~l 223 (758)
T 1r6b_X 207 KNNPLLVGESG-VGKTAI 223 (758)
T ss_dssp SCEEEEECCTT-SSHHHH
T ss_pred CCCeEEEcCCC-CCHHHH
Confidence 45899999999 999964
No 241
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=67.30 E-value=11 Score=42.47 Aligned_cols=79 Identities=14% Similarity=0.236 Sum_probs=40.7
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccC---------CcEEEEEecCCCHHHHH---HHHhc-CCCcEEEEChHHHHHHH
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAF---------GIHTVSLHPGAAIDHQI---TGLRS-CEPEFLVSTPERLLKLV 321 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~---------~i~v~~~~gg~~~~~q~---~~l~~-~~~~IlV~TP~rL~~ll 321 (474)
.+.++||.++|+..+..+.+.+.....+ |.....++|+++...+. ..+.. +.++|||||- +
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~------~ 703 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS------V 703 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEEC------C
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC------c
Confidence 4679999999999999999999875222 33344445666655443 34455 6789999994 2
Q ss_pred HcCCCCCCCcceEEeccc
Q 011963 322 SLKAIDVSGVSLLVVDRL 339 (474)
Q Consensus 322 ~~~~~~l~~l~~lViDEa 339 (474)
-..++++..+.++|+=++
T Consensus 704 ~~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 704 ADEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp ------CCCCSEEEEESC
T ss_pred hhcCCcchhCCEEEEeCC
Confidence 235788899999987544
No 242
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=67.16 E-value=3.3 Score=41.17 Aligned_cols=45 Identities=9% Similarity=-0.012 Sum_probs=28.9
Q ss_pred HHHHHHhc------CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEec
Q 011963 209 EFWKCYSS------AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS 264 (474)
Q Consensus 209 ~~i~~~l~------g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~P 264 (474)
..+..++. |.=+++..|.| +||| .+++.++..+.. .+-.++|+..
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppG-sGKS-TLal~la~~~~~---------~gg~VlyId~ 97 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQES-SGKT-TLALHAIAEAQK---------MGGVAAFIDA 97 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTT-SSHH-HHHHHHHHHHHH---------TTCCEEEEES
T ss_pred HHHHHHhccCCccCCcEEEEECCCC-CCHH-HHHHHHHHHHHh---------cCCeEEEEec
Confidence 44555555 34578889999 9999 566666655443 2345677754
No 243
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=66.07 E-value=1.2 Score=43.72 Aligned_cols=72 Identities=17% Similarity=0.214 Sum_probs=0.0
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVS 332 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~ 332 (474)
+.++||+++|++-+..++..+... ++.+..++|+.+..... ..+..+...|||+|. +-..++++.++.
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~------~~~~Gldi~~~~ 329 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRND---KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD------LLARGIDVQQVS 329 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc---CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC------hhhcCCCcccCC
Confidence 458999999999988887776554 77888899987755433 334455688999995 123567787888
Q ss_pred eEEe
Q 011963 333 LLVV 336 (474)
Q Consensus 333 ~lVi 336 (474)
++|.
T Consensus 330 ~Vi~ 333 (394)
T 1fuu_A 330 LVIN 333 (394)
T ss_dssp ----
T ss_pred EEEE
Confidence 7774
No 244
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.87 E-value=35 Score=35.00 Aligned_cols=16 Identities=25% Similarity=0.123 Sum_probs=14.0
Q ss_pred CcEEEEcCCCcchhHHH
Q 011963 218 KDILETSGSSSTIVQIA 234 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (474)
+.+|...|.| +|||+.
T Consensus 244 rGILLyGPPG-TGKTlL 259 (467)
T 4b4t_H 244 KGILLYGPPG-TGKTLC 259 (467)
T ss_dssp SEEEECSCTT-SSHHHH
T ss_pred CceEeeCCCC-CcHHHH
Confidence 5789999999 999964
No 245
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=65.85 E-value=80 Score=32.61 Aligned_cols=17 Identities=6% Similarity=-0.160 Sum_probs=13.2
Q ss_pred CcEEEEcCCCcchhHHHH
Q 011963 218 KDILETSGSSSTIVQIAW 235 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (474)
+-+++++++| +|||...
T Consensus 102 ~vI~ivG~~G-vGKTTl~ 118 (504)
T 2j37_W 102 NVIMFVGLQG-SGKTTTC 118 (504)
T ss_dssp EEEEEECSTT-SSHHHHH
T ss_pred eEEEEECCCC-CCHHHHH
Confidence 3577888999 9999644
No 246
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=65.39 E-value=5.6 Score=31.81 Aligned_cols=29 Identities=21% Similarity=0.149 Sum_probs=26.5
Q ss_pred CCcEEEEEccchhHHHHHHHHhhCCCccc
Q 011963 433 PLKVLYIVGKDSKFQNLVSTLKCKGYSIS 461 (474)
Q Consensus 433 ~~k~LVF~~s~~~a~~l~~~L~~~gi~v~ 461 (474)
..+++|||.+-.++...+..|...||+|.
T Consensus 55 ~~~ivvyC~~G~rs~~aa~~L~~~G~~v~ 83 (108)
T 3gk5_A 55 DKKYAVICAHGNRSAAAVEFLSQLGLNIV 83 (108)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHTTTCCEE
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCCEE
Confidence 67999999999999999999999999664
No 247
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=65.29 E-value=1.1e+02 Score=30.94 Aligned_cols=19 Identities=0% Similarity=-0.305 Sum_probs=14.0
Q ss_pred cCCcEEEEcCCCcchhHHHH
Q 011963 216 SAKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf 235 (474)
.++-++++.++| +|||...
T Consensus 97 ~~~vi~i~G~~G-sGKTT~~ 115 (425)
T 2ffh_A 97 DRNLWFLVGLQG-SGKTTTA 115 (425)
T ss_dssp SSEEEEEECCTT-SSHHHHH
T ss_pred CCeEEEEECCCC-CCHHHHH
Confidence 455677778999 9998644
No 248
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=65.00 E-value=4.4 Score=34.10 Aligned_cols=21 Identities=5% Similarity=0.071 Sum_probs=17.0
Q ss_pred HHhcCCcEEEEcCCCcchhHHH
Q 011963 213 CYSSAKDILETSGSSSTIVQIA 234 (474)
Q Consensus 213 ~~l~g~dvl~~A~TG~SGKTla 234 (474)
....+.++++..|+| +|||..
T Consensus 23 ~~~~~~~vll~G~~G-tGKt~l 43 (143)
T 3co5_A 23 AAKRTSPVFLTGEAG-SPFETV 43 (143)
T ss_dssp HHTCSSCEEEEEETT-CCHHHH
T ss_pred HhCCCCcEEEECCCC-ccHHHH
Confidence 345567999999999 999963
No 249
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=64.28 E-value=11 Score=40.86 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=53.9
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhc-cc-----------------------------CCcEEEEEecCCCHHHHH---HHH
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPL-KA-----------------------------FGIHTVSLHPGAAIDHQI---TGL 302 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l-~~-----------------------------~~i~v~~~~gg~~~~~q~---~~l 302 (474)
+..+||.+|||.-+..+...+... .. ....+..++||.+...+. ..+
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 458999999999999988887653 11 012488899999877654 344
Q ss_pred hcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecc
Q 011963 303 RSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDR 338 (474)
Q Consensus 303 ~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDE 338 (474)
..+..+|||||.- -..++++..+.+ |||.
T Consensus 317 ~~g~~~vlvaT~~------l~~Gvdip~~~~-VI~~ 345 (720)
T 2zj8_A 317 RKGIIKAVVATPT------LSAGINTPAFRV-IIRD 345 (720)
T ss_dssp HTTSSCEEEECST------TGGGCCCCBSEE-EECC
T ss_pred HCCCCeEEEECcH------hhccCCCCceEE-EEcC
Confidence 5667899999951 235678888776 5553
No 250
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=64.04 E-value=5.1 Score=31.99 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=26.6
Q ss_pred CCcEEEEEccchhHHHHHHHHhhCCCccc
Q 011963 433 PLKVLYIVGKDSKFQNLVSTLKCKGYSIS 461 (474)
Q Consensus 433 ~~k~LVF~~s~~~a~~l~~~L~~~gi~v~ 461 (474)
..+++|||.+-.++...+..|...||++.
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G~~~~ 84 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAV 84 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEE
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcCCCEE
Confidence 67999999999999999999999999764
No 251
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=63.67 E-value=16 Score=39.35 Aligned_cols=74 Identities=15% Similarity=0.176 Sum_probs=52.8
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhc-cc--------------------------CCcEEEEEecCCCHHHHHH---HHhcC
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPL-KA--------------------------FGIHTVSLHPGAAIDHQIT---GLRSC 305 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l-~~--------------------------~~i~v~~~~gg~~~~~q~~---~l~~~ 305 (474)
+..+||.+||+.-+..+...+... .. .+..+..++||.+...+.. .+..+
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g 321 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 321 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC
Confidence 458999999999999888877653 11 0134677999998766543 34556
Q ss_pred CCcEEEEChHHHHHHHHcCCCCCCCcceEE
Q 011963 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (474)
Q Consensus 306 ~~~IlV~TP~rL~~ll~~~~~~l~~l~~lV 335 (474)
...|||||. .-..++++..+.++|
T Consensus 322 ~~~vlvaT~------~l~~Gidip~~~~VI 345 (702)
T 2p6r_A 322 NIKVVVATP------TLAAGVNLPARRVIV 345 (702)
T ss_dssp SCCEEEECS------TTTSSSCCCBSEEEE
T ss_pred CCeEEEECc------HHhccCCCCceEEEE
Confidence 789999996 224678888887744
No 252
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=62.95 E-value=1e+02 Score=29.09 Aligned_cols=38 Identities=13% Similarity=0.032 Sum_probs=30.4
Q ss_pred HHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 419 ~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
..+..++..+ +.+.-|||.+...|-.+...|...|+.+
T Consensus 236 ~~~~~ll~~~----~~~~ai~~~nd~~A~g~~~al~~~g~~v 273 (344)
T 3kjx_A 236 EMTQAMLERS----PDLDFLYYSNDMIAAGGLLYLLEQGIDI 273 (344)
T ss_dssp HHHHHHHHHS----TTCCEEEESSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhcC----CCCCEEEECCHHHHHHHHHHHHHcCCCC
Confidence 5555666554 3578899999999999999999999875
No 253
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=62.86 E-value=6.3 Score=30.88 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=26.4
Q ss_pred CCcEEEEEccchhHHHHHHHHhhCCCccc
Q 011963 433 PLKVLYIVGKDSKFQNLVSTLKCKGYSIS 461 (474)
Q Consensus 433 ~~k~LVF~~s~~~a~~l~~~L~~~gi~v~ 461 (474)
..+++|||.+-.++...+..|...||++.
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G~~v~ 84 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNGVNAV 84 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCEEE
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCCCCEE
Confidence 57999999999999999999999999654
No 254
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=62.70 E-value=9.4 Score=34.60 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=16.2
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHH
Q 011963 218 KDILETSGSSSTIVQIAWIVATAA 241 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~ 241 (474)
.=+++.+++| +||| +|++-++.
T Consensus 31 ~l~~i~G~pG-~GKT-~l~l~~~~ 52 (251)
T 2zts_A 31 TTVLLTGGTG-TGKT-TFAAQFIY 52 (251)
T ss_dssp CEEEEECCTT-SSHH-HHHHHHHH
T ss_pred eEEEEEeCCC-CCHH-HHHHHHHH
Confidence 4678899999 9999 55554443
No 255
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=61.82 E-value=17 Score=40.04 Aligned_cols=16 Identities=19% Similarity=0.086 Sum_probs=14.1
Q ss_pred CcEEEEcCCCcchhHHH
Q 011963 218 KDILETSGSSSTIVQIA 234 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (474)
+.+|+..|.| +|||+.
T Consensus 239 ~GILL~GPPG-TGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPG-TGKTLI 254 (806)
T ss_dssp CEEEEECCTT-SCHHHH
T ss_pred CeEEEECCCC-CCHHHH
Confidence 5789999999 999964
No 256
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=61.24 E-value=6.2 Score=31.06 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=26.3
Q ss_pred CCcEEEEEccchhHHHHHHHHhhCCCccc
Q 011963 433 PLKVLYIVGKDSKFQNLVSTLKCKGYSIS 461 (474)
Q Consensus 433 ~~k~LVF~~s~~~a~~l~~~L~~~gi~v~ 461 (474)
..+++|||.+-.++...+..|...||++.
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G~~v~ 84 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAV 84 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEE
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCCeE
Confidence 67899999999999999999999999654
No 257
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=60.61 E-value=1e+02 Score=28.24 Aligned_cols=39 Identities=8% Similarity=-0.003 Sum_probs=31.5
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 418 IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 418 ~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
+..+..++..+ ..+.-|||.+...|..+...|...|+.+
T Consensus 173 ~~~~~~~l~~~----~~~~ai~~~~d~~A~g~~~al~~~g~~v 211 (289)
T 3k9c_A 173 AEGMHTLLEMP----TPPTAVVAFNDRCATGVLDLLVRSGRDV 211 (289)
T ss_dssp HHHHHHHHTSS----SCCSEEEESSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHcCC----CCCCEEEECChHHHHHHHHHHHHcCCCC
Confidence 35666776654 4578899999999999999999999874
No 258
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=60.28 E-value=1.2e+02 Score=28.87 Aligned_cols=38 Identities=18% Similarity=0.138 Sum_probs=30.0
Q ss_pred HHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 419 ~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
..+..++..+ ..+.-|||.+...|..+...|...|+.+
T Consensus 239 ~~~~~ll~~~----~~~~ai~~~nD~~A~g~~~al~~~G~~v 276 (355)
T 3e3m_A 239 AAAELILQEY----PDTDCIFCVSDMPAFGLLSRLKSIGVAV 276 (355)
T ss_dssp HHHHHHHHHC----TTCCEEEESSHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHcCC----CCCcEEEECChHHHHHHHHHHHHcCCCC
Confidence 4555555553 4578899999999999999999999874
No 259
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=60.20 E-value=7.4 Score=46.46 Aligned_cols=123 Identities=17% Similarity=0.216 Sum_probs=71.3
Q ss_pred hHHHHHHHhcC------CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcc
Q 011963 207 GIEFWKCYSSA------KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLK 280 (474)
Q Consensus 207 Q~~~i~~~l~g------~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~ 280 (474)
....+..+|-+ +-+.+..|.| ||||. .+++++..... .+-.|++|.+=.+|-... ++.+
T Consensus 1415 G~~~lD~~lg~gG~prg~~iei~g~~~-sGktt-l~~~~~a~~~~---------~g~~~~~i~~e~~~~~~~---~~~~- 1479 (1706)
T 3cmw_A 1415 GSLSLDIALGAGGLPMGRIVEIYGPES-SGKTT-LTLQVIAAAQR---------EGKTCAFIDAEHALDPIY---ARKL- 1479 (1706)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEECSTT-SSHHH-HHHHHHHHHHH---------TTCCEEEECTTSCCCHHH---HHHT-
T ss_pred CCHHHHHhcCCCCCCCCCEEEEEcCCC-CCHHH-HHHHHHHHHHh---------cCCeEEEEecCCCCCHHH---HHHc-
Confidence 66777777774 5699999999 99995 44566654443 366888887754443332 3333
Q ss_pred cCCcEEEEEecCCCHHHHHHHHhcCCCcEEEEChHH---HHH----HHHcCCCCCCCcceEEeccccccCC---hh----
Q 011963 281 AFGIHTVSLHPGAAIDHQITGLRSCEPEFLVSTPER---LLK----LVSLKAIDVSGVSLLVVDRLDSLSK---GD---- 346 (474)
Q Consensus 281 ~~~i~v~~~~gg~~~~~q~~~l~~~~~~IlV~TP~r---L~~----ll~~~~~~l~~l~~lViDEad~ll~---~~---- 346 (474)
|+.+ + +++|+-|.. .+. +++.+. ++.+|||.+..|.. .+
T Consensus 1480 --Gv~~---------~-----------~l~~~~p~~~e~~l~~~~~~~~s~~-----~~~vvvDsv~al~~~~e~~~~~~ 1532 (1706)
T 3cmw_A 1480 --GVDI---------D-----------NLLCSQPDTGEQALEICDALARSGA-----VDVIVVDSVAALTPKAEIEGEIG 1532 (1706)
T ss_dssp --TCCG---------G-----------GCEEECCSSHHHHHHHHHHHHHHTC-----CSEEEESCSTTCCCTTTTC----
T ss_pred --CCCH---------H-----------HeEEeCCCcHHHHHHHHHHHHHcCC-----CCEEEEccHHhCCcccccccccc
Confidence 3321 1 256666632 222 233333 56899999988876 11
Q ss_pred ------H-------HHHHHhhCCCCCcEEEEEccCCcc
Q 011963 347 ------T-------LSLIRQSISGKPHTVVFNDCLTYT 371 (474)
Q Consensus 347 ------~-------l~~Il~~l~~~~q~llfSAT~~~~ 371 (474)
+ |.++...+....-+++|...+...
T Consensus 1533 ~~~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~~ 1570 (1706)
T 3cmw_A 1533 DSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 1570 (1706)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECBC--
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhCCcEEEEeeccccc
Confidence 1 333344444445577777766543
No 260
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=59.70 E-value=1.1e+02 Score=28.27 Aligned_cols=40 Identities=10% Similarity=-0.014 Sum_probs=27.3
Q ss_pred HHHHHHHH-hhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 417 GIQVLDHA-YGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 417 l~~lL~~l-l~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
-+..+..+ +..+ ..+.-|||.+...|..+...|...|+.+
T Consensus 188 ~~~~~~~~~l~~~----~~~~ai~~~nd~~A~g~~~al~~~g~~v 228 (305)
T 3huu_A 188 LRDFIKQYCIDAS----HMPSVIITSDVMLNMQLLNVLYEYQLRI 228 (305)
T ss_dssp HHHHC------------CCCSEEEESSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhhhcCC----CCCCEEEECChHHHHHHHHHHHHcCCCC
Confidence 33555566 5543 4577899999999999999999999875
No 261
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=58.87 E-value=8.7 Score=38.14 Aligned_cols=43 Identities=5% Similarity=-0.041 Sum_probs=29.0
Q ss_pred cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHH
Q 011963 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKA 269 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa 269 (474)
.+.++++++||| ||||...- -++..+.. .+.+++|+=|..+..
T Consensus 34 ~~~~~~i~G~~G-~GKs~~~~-~~~~~~~~---------~~~~~~~~D~~~~~~ 76 (392)
T 4ag6_A 34 TNSNWTILAKPG-AGKSFTAK-MLLLREYM---------QGSRVIIIDPEREYK 76 (392)
T ss_dssp CCCCEEEECCTT-SSHHHHHH-HHHHHHHT---------TTCCEEEEESSCCSH
T ss_pred ccCceEEEcCCC-CCHHHHHH-HHHHHHHH---------CCCEEEEEeCCcCHH
Confidence 567999999999 99995433 23333332 356778888876643
No 262
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=58.65 E-value=88 Score=28.81 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=29.0
Q ss_pred HHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 420 VLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 420 lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
.+..++..+ ..+.-|||.+...|..+...|...|+.+
T Consensus 187 ~~~~~l~~~----~~~~ai~~~~d~~A~g~~~al~~~g~~v 223 (301)
T 3miz_A 187 AATEMLKQD----DRPTAIMSGNDEMAIQIYIAAMALGLRI 223 (301)
T ss_dssp HHHHHHTST----TCCSEEEESSHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHcCC----CCCcEEEECCHHHHHHHHHHHHHcCCCC
Confidence 444555443 4678899999999999999999999874
No 263
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=58.38 E-value=7 Score=38.84 Aligned_cols=25 Identities=0% Similarity=-0.296 Sum_probs=18.8
Q ss_pred HHHHHhcCCcEEEE--cCCCcchhHHHH
Q 011963 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~dvl~~--A~TG~SGKTlaf 235 (474)
.+..++.|.++.+. .+|| ||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTG-SGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTG-AGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTT-SSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCC-CCccEEe
Confidence 45667899865544 5999 9999875
No 264
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=57.86 E-value=60 Score=31.46 Aligned_cols=50 Identities=10% Similarity=0.075 Sum_probs=34.9
Q ss_pred cceEEeccccccCC----hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhh
Q 011963 331 VSLLVVDRLDSLSK----GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLL 380 (474)
Q Consensus 331 l~~lViDEad~ll~----~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l 380 (474)
.++++||.+-++-. ..++..|.+.+.++..++++.+|....+...++.+.
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 34667887766542 556666666666777788888888877777777664
No 265
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=57.12 E-value=42 Score=36.91 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=24.9
Q ss_pred ceEEeccccccCC-h------------hHHHHHHhhC---CCCCcEEEEEccCCcc
Q 011963 332 SLLVVDRLDSLSK-G------------DTLSLIRQSI---SGKPHTVVFNDCLTYT 371 (474)
Q Consensus 332 ~~lViDEad~ll~-~------------~~l~~Il~~l---~~~~q~llfSAT~~~~ 371 (474)
..|+|||+|.++. + ..+..++..+ .....++++-||-.++
T Consensus 572 ~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~ 627 (806)
T 3cf2_A 572 CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 627 (806)
T ss_dssp EEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSS
T ss_pred ceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCch
Confidence 4688999999975 1 1233444333 4566788888987665
No 266
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=57.10 E-value=7.9 Score=39.06 Aligned_cols=25 Identities=0% Similarity=-0.096 Sum_probs=19.4
Q ss_pred HHHHHhcCCcEEE--EcCCCcchhHHHH
Q 011963 210 FWKCYSSAKDILE--TSGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~dvl~--~A~TG~SGKTlaf 235 (474)
.+..++.|.++.+ ..+|| ||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTG-SGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTG-SGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTT-SSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCC-CCCceEe
Confidence 4567789987554 45999 9999876
No 267
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=56.06 E-value=2.7 Score=46.32 Aligned_cols=93 Identities=18% Similarity=0.232 Sum_probs=59.8
Q ss_pred CcEEEEEeccHHHH-----HHHHHHHHhccc--C-CcEEEEEecCCCH---HHHHHHHhcCCCcEEEEChHHHHHHHHcC
Q 011963 256 GPFLLFLVSSQEKA-----AKVRSVCKPLKA--F-GIHTVSLHPGAAI---DHQITGLRSCEPEFLVSTPERLLKLVSLK 324 (474)
Q Consensus 256 ~~~alil~PtreLa-----~Qi~~~~~~l~~--~-~i~v~~~~gg~~~---~~q~~~l~~~~~~IlV~TP~rL~~ll~~~ 324 (474)
+.+++|++|+.+-. ..+......|.. + ++.+..++|+++. ......+.++.++|||||. +-..
T Consensus 578 g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~------vie~ 651 (780)
T 1gm5_A 578 GGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT------VIEV 651 (780)
T ss_dssp SCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS------CCCS
T ss_pred CCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECC------CCCc
Confidence 55789999976432 123333344533 3 7888899998663 4445666777899999995 2347
Q ss_pred CCCCCCcceEEeccccccCChhHHHHHHhhC
Q 011963 325 AIDVSGVSLLVVDRLDSLSKGDTLSLIRQSI 355 (474)
Q Consensus 325 ~~~l~~l~~lViDEad~ll~~~~l~~Il~~l 355 (474)
++|+.++.++|+..+++.. ...+.+.....
T Consensus 652 GIDiP~v~~VIi~d~~r~~-l~~l~Qr~GRa 681 (780)
T 1gm5_A 652 GIDVPRANVMVIENPERFG-LAQLHQLRGRV 681 (780)
T ss_dssp CSCCTTCCEEEBCSCSSSC-TTHHHHHHHTS
T ss_pred cccCCCCCEEEEeCCCCCC-HHHHHHHhccc
Confidence 8999999999999888753 34454444444
No 268
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=55.62 E-value=1.4e+02 Score=28.37 Aligned_cols=18 Identities=11% Similarity=-0.123 Sum_probs=13.6
Q ss_pred CCcEEEEcCCCcchhHHHH
Q 011963 217 AKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (474)
++=++++.|+| +|||...
T Consensus 104 ~~vi~ivG~~G-sGKTTl~ 121 (306)
T 1vma_A 104 PFVIMVVGVNG-TGKTTSC 121 (306)
T ss_dssp CEEEEEECCTT-SSHHHHH
T ss_pred CeEEEEEcCCC-ChHHHHH
Confidence 44577888999 9998543
No 269
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=55.40 E-value=21 Score=34.20 Aligned_cols=25 Identities=0% Similarity=-0.387 Sum_probs=18.6
Q ss_pred HHHHHHHhcC-----CcEEEEcCCCcchhHH
Q 011963 208 IEFWKCYSSA-----KDILETSGSSSTIVQI 233 (474)
Q Consensus 208 ~~~i~~~l~g-----~dvl~~A~TG~SGKTl 233 (474)
...+..++.| .-+++.+|+| +|||.
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~g-sGKT~ 113 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFG-SGKTQ 113 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTT-SSHHH
T ss_pred ChhHHHhcCCCccCCeEEEEECCCC-CCHHH
Confidence 3556667654 4678889999 99984
No 270
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=55.23 E-value=1.2e+02 Score=27.48 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=31.2
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 418 IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 418 ~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
+..+..++..+ ..+.-|||.+...|..+...|...|+.+
T Consensus 180 ~~~~~~~l~~~----~~~~ai~~~~d~~a~g~~~al~~~g~~v 218 (292)
T 3k4h_A 180 QQAVEELMGLQ----QPPTAIMATDDLIGLGVLSALSKKGFVV 218 (292)
T ss_dssp HHHHHHHHTSS----SCCSEEEESSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHcCC----CCCcEEEEcChHHHHHHHHHHHHhCCCC
Confidence 35666776554 3577889999999999999999999874
No 271
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=55.19 E-value=25 Score=40.17 Aligned_cols=74 Identities=8% Similarity=-0.052 Sum_probs=50.8
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccC------------------------------------CcEEEEEecCCCHHHHH
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAF------------------------------------GIHTVSLHPGAAIDHQI 299 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~------------------------------------~i~v~~~~gg~~~~~q~ 299 (474)
+..+||.++|+.-|.++...+..+... ...+..++||.+...+.
T Consensus 441 ~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~ 520 (1108)
T 3l9o_A 441 YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 520 (1108)
T ss_dssp CCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHH
T ss_pred CCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHH
Confidence 558999999999999888877553100 11178899998866543
Q ss_pred ---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEE
Q 011963 300 ---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLV 335 (474)
Q Consensus 300 ---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lV 335 (474)
..+..+.++|||||. +-..++++..+.++|
T Consensus 521 ~v~~~F~~G~ikVLVAT~------vla~GIDiP~v~~VI 553 (1108)
T 3l9o_A 521 VIEILFQEGFLKVLFATE------TFSIGLNMPAKTVVF 553 (1108)
T ss_dssp HHHHHHHHTCCCEEEEES------CCCSCCCC--CEEEE
T ss_pred HHHHHHhCCCCeEEEECc------HHhcCCCCCCceEEE
Confidence 334566799999995 223678888888855
No 272
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=54.81 E-value=2e+02 Score=31.59 Aligned_cols=16 Identities=0% Similarity=-0.176 Sum_probs=13.9
Q ss_pred CcEEEEcCCCcchhHHH
Q 011963 218 KDILETSGSSSTIVQIA 234 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (474)
.+++++.|+| +|||..
T Consensus 192 ~~vlL~G~pG-~GKT~l 207 (854)
T 1qvr_A 192 NNPVLIGEPG-VGKTAI 207 (854)
T ss_dssp CCCEEEECTT-SCHHHH
T ss_pred CceEEEcCCC-CCHHHH
Confidence 4899999999 999953
No 273
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=54.81 E-value=8.8 Score=37.53 Aligned_cols=25 Identities=12% Similarity=-0.052 Sum_probs=18.6
Q ss_pred HHHHHhcCCc--EEEEcCCCcchhHHHH
Q 011963 210 FWKCYSSAKD--ILETSGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~d--vl~~A~TG~SGKTlaf 235 (474)
.+..++.|.+ +++-.+|| ||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTG-SGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTS-SGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTT-SSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCC-CCCceEe
Confidence 3456788986 45556999 9999875
No 274
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=54.80 E-value=10 Score=29.99 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=26.0
Q ss_pred CCcEEEEEccchhHHHHHHHHhhCCCc-cc
Q 011963 433 PLKVLYIVGKDSKFQNLVSTLKCKGYS-IS 461 (474)
Q Consensus 433 ~~k~LVF~~s~~~a~~l~~~L~~~gi~-v~ 461 (474)
..+++|||.+-..+...+..|...||. |.
T Consensus 52 ~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~ 81 (106)
T 3hix_A 52 SRDIYVYGAGDEQTSQAVNLLRSAGFEHVS 81 (106)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCSCEE
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCcCEE
Confidence 568999999999999999999999995 43
No 275
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=54.48 E-value=15 Score=29.80 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=25.1
Q ss_pred CcEEEEE-ccchhHHHHHHHHhhCCCccc
Q 011963 434 LKVLYIV-GKDSKFQNLVSTLKCKGYSIS 461 (474)
Q Consensus 434 ~k~LVF~-~s~~~a~~l~~~L~~~gi~v~ 461 (474)
.++|||| .+-..+..++..|...||+|.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~ 118 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVY 118 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCE
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceE
Confidence 6999999 588999999999999999765
No 276
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=54.40 E-value=22 Score=39.09 Aligned_cols=18 Identities=17% Similarity=0.089 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCcchhHHH
Q 011963 216 SAKDILETSGSSSTIVQIA 234 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (474)
.++.++++.|+| ||||..
T Consensus 237 ~~~~vLL~Gp~G-tGKTtL 254 (806)
T 1ypw_A 237 PPRGILLYGPPG-TGKTLI 254 (806)
T ss_dssp CCCEEEECSCTT-SSHHHH
T ss_pred CCCeEEEECcCC-CCHHHH
Confidence 456899999999 999963
No 277
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=54.32 E-value=1.5e+02 Score=29.81 Aligned_cols=17 Identities=6% Similarity=-0.167 Sum_probs=12.5
Q ss_pred CcEEEEcCCCcchhHHHH
Q 011963 218 KDILETSGSSSTIVQIAW 235 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (474)
+-+++++++| +|||...
T Consensus 101 ~vI~ivG~~G-vGKTT~a 117 (433)
T 2xxa_A 101 AVVLMAGLQG-AGKTTSV 117 (433)
T ss_dssp EEEEEECSTT-SSHHHHH
T ss_pred eEEEEECCCC-CCHHHHH
Confidence 3567778888 9999543
No 278
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=54.30 E-value=9 Score=38.03 Aligned_cols=25 Identities=0% Similarity=-0.296 Sum_probs=18.7
Q ss_pred HHHHHhcCCcEEEE--cCCCcchhHHHH
Q 011963 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~dvl~~--A~TG~SGKTlaf 235 (474)
.+..++.|.++.+. .+|| ||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTG-SGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTG-AGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTT-SSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCC-CCCceEe
Confidence 45667889875444 5999 9999875
No 279
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=54.17 E-value=11 Score=30.00 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=25.6
Q ss_pred CCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 433 PLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 433 ~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
..+++|||.+-..+...+..|...||..
T Consensus 56 ~~~ivvyC~~G~rs~~aa~~L~~~G~~~ 83 (110)
T 2k0z_A 56 DKKVLLHCRAGRRALDAAKSMHELGYTP 83 (110)
T ss_dssp SSCEEEECSSSHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEEeCCCchHHHHHHHHHHCCCCE
Confidence 6799999999999999999999999864
No 280
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=54.10 E-value=8.1 Score=38.12 Aligned_cols=25 Identities=8% Similarity=-0.110 Sum_probs=18.4
Q ss_pred HHHHHhcCCcE--EEEcCCCcchhHHHH
Q 011963 210 FWKCYSSAKDI--LETSGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~dv--l~~A~TG~SGKTlaf 235 (474)
.+..++.|.+. ++..+|| ||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTG-SGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTG-TGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTT-SSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCC-CCCCeEE
Confidence 34556889865 4556999 9999875
No 281
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=53.98 E-value=61 Score=35.42 Aligned_cols=77 Identities=17% Similarity=0.125 Sum_probs=54.7
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHh---cCCCc---EEEEChHHHHHHHHcCCCCC
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLR---SCEPE---FLVSTPERLLKLVSLKAIDV 328 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~---~~~~~---IlV~TP~rL~~ll~~~~~~l 328 (474)
.+-++||.+..+..+..+...|... |+.+..++|+++.......+. .+... +|++| ..+ ..+++|
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~---g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt-~ag-----g~GlNL 641 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIK---GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLST-RAG-----GLGINL 641 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH---TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEH-HHH-----TTTCCC
T ss_pred CCCeEEEEechHHHHHHHHHHHHhC---CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEec-ccc-----cCCCCc
Confidence 3568999999999888888777654 788899999998776655553 22222 55554 322 467889
Q ss_pred CCcceEEecccc
Q 011963 329 SGVSLLVVDRLD 340 (474)
Q Consensus 329 ~~l~~lViDEad 340 (474)
.....+|+=+.+
T Consensus 642 ~~a~~VI~~D~~ 653 (800)
T 3mwy_W 642 MTADTVVIFDSD 653 (800)
T ss_dssp TTCCEEEESSCC
T ss_pred cccceEEEecCC
Confidence 889988885444
No 282
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=53.69 E-value=1.5e+02 Score=27.92 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=30.3
Q ss_pred HHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 419 ~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
..+..++..+ ..+.-|||.+...|-.+...|...|+.+
T Consensus 228 ~~~~~ll~~~----~~~~ai~~~nD~~A~g~~~al~~~G~~v 265 (339)
T 3h5o_A 228 DMLDRALAER----PDCDALFCCNDDLAIGALARSQQLGIAV 265 (339)
T ss_dssp HHHHHHHHHC----TTCCEEEESSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCC----CCCcEEEECChHHHHHHHHHHHHcCCCC
Confidence 5556666554 3578899999999999999999999875
No 283
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=53.52 E-value=9.5 Score=37.76 Aligned_cols=25 Identities=0% Similarity=-0.162 Sum_probs=18.8
Q ss_pred HHHHHhcCCcEE--EEcCCCcchhHHHH
Q 011963 210 FWKCYSSAKDIL--ETSGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~dvl--~~A~TG~SGKTlaf 235 (474)
.+..++.|.+.. +-.+|| ||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTG-SGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTG-SGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTT-SSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCC-CCCceEE
Confidence 455678898754 445999 9999876
No 284
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=53.49 E-value=8.3 Score=39.03 Aligned_cols=26 Identities=4% Similarity=-0.110 Sum_probs=20.1
Q ss_pred HHHHHHhcCCcEEEE--cCCCcchhHHHH
Q 011963 209 EFWKCYSSAKDILET--SGSSSTIVQIAW 235 (474)
Q Consensus 209 ~~i~~~l~g~dvl~~--A~TG~SGKTlaf 235 (474)
..+..++.|.++.+. .+|| ||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTG-SGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTG-SGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTT-SSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCC-CCCeeEe
Confidence 356778899875554 5999 9999875
No 285
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=53.45 E-value=9.4 Score=37.61 Aligned_cols=25 Identities=0% Similarity=-0.001 Sum_probs=18.4
Q ss_pred HHHHHhcCCcE--EEEcCCCcchhHHHH
Q 011963 210 FWKCYSSAKDI--LETSGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~dv--l~~A~TG~SGKTlaf 235 (474)
.+..++.|.+. ++-.+|| ||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTG-SGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTG-SGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTT-SSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccC-CCceEee
Confidence 34566889865 4455999 9999875
No 286
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=53.35 E-value=9.5 Score=37.96 Aligned_cols=25 Identities=4% Similarity=-0.194 Sum_probs=18.4
Q ss_pred HHHHHhcCCcE--EEEcCCCcchhHHHH
Q 011963 210 FWKCYSSAKDI--LETSGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~dv--l~~A~TG~SGKTlaf 235 (474)
.+..++.|.+. ++-.+|| ||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTG-SGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTS-SGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTT-SSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCC-CCCceEE
Confidence 34566889864 4456999 9999875
No 287
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=53.29 E-value=8 Score=38.24 Aligned_cols=25 Identities=0% Similarity=-0.122 Sum_probs=19.3
Q ss_pred HHHHHhcCCcEEE--EcCCCcchhHHHH
Q 011963 210 FWKCYSSAKDILE--TSGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~dvl~--~A~TG~SGKTlaf 235 (474)
.+..++.|.++.+ ..+|| ||||...
T Consensus 77 lv~~~l~G~n~tifAYGqTG-SGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTG-SGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTT-SSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCC-CCCceEe
Confidence 4567789987544 45999 9999876
No 288
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=53.23 E-value=9.9 Score=38.50 Aligned_cols=27 Identities=11% Similarity=-0.006 Sum_probs=18.3
Q ss_pred hHHHHHHHhc--CCcEEEEcCCCcchhHHH
Q 011963 207 GIEFWKCYSS--AKDILETSGSSSTIVQIA 234 (474)
Q Consensus 207 Q~~~i~~~l~--g~dvl~~A~TG~SGKTla 234 (474)
+..++..++. |.-++++.||| ||||..
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnG-SGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTG-SGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTT-SCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCC-CCHHHH
Confidence 4445544443 34578999999 999853
No 289
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=53.17 E-value=9.7 Score=37.32 Aligned_cols=25 Identities=0% Similarity=-0.064 Sum_probs=19.1
Q ss_pred HHHHHhcCCcE--EEEcCCCcchhHHHH
Q 011963 210 FWKCYSSAKDI--LETSGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~dv--l~~A~TG~SGKTlaf 235 (474)
.+..++.|.+. ++..+|| ||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTG-SGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTG-AGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTT-SSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCC-CCCcEEE
Confidence 45677899874 4456999 9999876
No 290
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=52.97 E-value=13 Score=37.94 Aligned_cols=44 Identities=9% Similarity=-0.030 Sum_probs=29.8
Q ss_pred HHHHHHhcC----CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe
Q 011963 209 EFWKCYSSA----KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV 263 (474)
Q Consensus 209 ~~i~~~l~g----~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~ 263 (474)
..+..++.| .=+++.+++| +||| +|++-++..+... +..++|++
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG-~GKT-tlal~ia~~~a~~---------g~~vl~fS 232 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPS-MGKT-AFALKQAKNMSDN---------DDVVNLHS 232 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSS-SSHH-HHHHHHHHHHHHT---------TCEEEEEC
T ss_pred HHHHhhcCCCCCCcEEEEEeCCC-CChH-HHHHHHHHHHHHc---------CCEEEEEE
Confidence 556666644 3577888999 9999 6666666655542 34677775
No 291
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=52.88 E-value=9.3 Score=37.90 Aligned_cols=25 Identities=4% Similarity=-0.157 Sum_probs=18.3
Q ss_pred HHHHHhcCCcEE--EEcCCCcchhHHHH
Q 011963 210 FWKCYSSAKDIL--ETSGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~dvl--~~A~TG~SGKTlaf 235 (474)
.+..++.|.+.. +-.+|| ||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTG-SGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTG-TGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTT-SSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCC-CCCceEE
Confidence 345668898654 455999 9999765
No 292
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=52.82 E-value=9.8 Score=37.97 Aligned_cols=25 Identities=4% Similarity=-0.230 Sum_probs=18.3
Q ss_pred HHHHHhcCCcEEE--EcCCCcchhHHHH
Q 011963 210 FWKCYSSAKDILE--TSGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~dvl~--~A~TG~SGKTlaf 235 (474)
.+..++.|.+..+ -.+|| ||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTG-SGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTG-TGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTT-SSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCC-CCCCEeE
Confidence 3455788986544 45999 9999875
No 293
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=52.80 E-value=1.1e+02 Score=27.77 Aligned_cols=39 Identities=15% Similarity=0.100 Sum_probs=31.5
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 418 IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 418 ~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
+..+..++..+ ..+.-|||.+...|..+...|...|+.+
T Consensus 176 ~~~~~~~l~~~----~~~~ai~~~~d~~a~g~~~al~~~g~~v 214 (289)
T 3g85_A 176 VDAAKKLMKLK----NTPKALFCNSDSIALGVISVLNKRQISI 214 (289)
T ss_dssp HHHHHHHTTSS----SCCSEEEESSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHcCC----CCCcEEEEcCCHHHHHHHHHHHHcCCCC
Confidence 36677777654 3577899999999999999999999874
No 294
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=52.65 E-value=73 Score=29.62 Aligned_cols=83 Identities=8% Similarity=0.090 Sum_probs=55.2
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
|.||-+||+..++|-|+..|-. +.. .|-.++++.-..+-+.++.+.++.. |-++..+..+..
T Consensus 5 L~gKvalVTGas~GIG~aiA~~------la~---------~Ga~Vv~~~~~~~~~~~~~~~i~~~---g~~~~~~~~Dvt 66 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKK------FAL---------NDSIVVAVELLEDRLNQIVQELRGM---GKEVLGVKADVS 66 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHH------HHH---------cCCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEEccCC
Confidence 6899899987666577654432 222 3667777777777777777776654 556777777776
Q ss_pred HHHHHHHHh------cCCCcEEEEChH
Q 011963 295 IDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
...+...+- -+++||||-.-|
T Consensus 67 ~~~~v~~~~~~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 67 KKKDVEEFVRRTFETYSRIDVLCNNAG 93 (254)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 555544442 247999997665
No 295
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=52.57 E-value=9.8 Score=38.48 Aligned_cols=25 Identities=0% Similarity=-0.126 Sum_probs=18.5
Q ss_pred HHHHHhcCCcE--EEEcCCCcchhHHHH
Q 011963 210 FWKCYSSAKDI--LETSGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~dv--l~~A~TG~SGKTlaf 235 (474)
.+..++.|.+. ++-.+|| ||||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTG-SGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTG-SGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTT-SSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCC-CCCCeEe
Confidence 34567889864 4456999 9999875
No 296
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=52.55 E-value=62 Score=29.99 Aligned_cols=126 Identities=15% Similarity=0.100 Sum_probs=67.5
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEE-eccHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL-VSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil-~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~ 293 (474)
+.|+-+||+..+||-|+-+|-. +.. .|..++++ ....+...++...+... +-++..+.++.
T Consensus 29 l~gk~~lVTGas~GIG~aia~~------la~---------~G~~V~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~Dv 90 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAKR------LAL---------EGAAVALTYVNAAERAQAVVSEIEQA---GGRAVAIRADN 90 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHHH------HHH---------TTCEEEEEESSCHHHHHHHHHHHHHT---TCCEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHH------HHH---------CCCEEEEEeCCCHHHHHHHHHHHHhc---CCcEEEEECCC
Confidence 5678889988777566654432 333 25565555 44455555555555443 44566666666
Q ss_pred CHHHHHHHHh------cCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccccCC------hhHHHHHHhhCCCCCcE
Q 011963 294 AIDHQITGLR------SCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSLSK------GDTLSLIRQSISGKPHT 361 (474)
Q Consensus 294 ~~~~q~~~l~------~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ll~------~~~l~~Il~~l~~~~q~ 361 (474)
........+- -+++|+||-..|.. ....+.-+=.|+.+.+++ ...++.++..+.....+
T Consensus 91 ~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~---------~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~i 161 (271)
T 3v2g_A 91 RDAEAIEQAIRETVEALGGLDILVNSAGIW---------HSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRI 161 (271)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCC---------CCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEECCCCC---------CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEE
Confidence 5444333321 13689999876532 111111122344555554 33344455555555667
Q ss_pred EEEEcc
Q 011963 362 VVFNDC 367 (474)
Q Consensus 362 llfSAT 367 (474)
+.+|..
T Consensus 162 v~isS~ 167 (271)
T 3v2g_A 162 ITIGSN 167 (271)
T ss_dssp EEECCG
T ss_pred EEEeCh
Confidence 777553
No 297
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=52.44 E-value=19 Score=29.87 Aligned_cols=27 Identities=11% Similarity=0.251 Sum_probs=25.3
Q ss_pred CCcEEEEEccchhHHHHHHHHhhCCCc
Q 011963 433 PLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (474)
Q Consensus 433 ~~k~LVF~~s~~~a~~l~~~L~~~gi~ 459 (474)
..+++|||.+-.++...+..|...||.
T Consensus 91 ~~~ivvyC~~G~rs~~aa~~L~~~G~~ 117 (139)
T 3d1p_A 91 AKELIFYCASGKRGGEAQKVASSHGYS 117 (139)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCC
T ss_pred CCeEEEECCCCchHHHHHHHHHHcCCC
Confidence 678999999999999999999999995
No 298
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=52.28 E-value=59 Score=30.21 Aligned_cols=86 Identities=12% Similarity=0.004 Sum_probs=49.2
Q ss_pred HHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEec
Q 011963 212 KCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHP 291 (474)
Q Consensus 212 ~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~g 291 (474)
+.++.|+-+||+..+||-|.-+|-. +.. .|..++++.-..+-+.++...+... +.++..+..
T Consensus 19 ~~m~~~k~~lVTGas~GIG~aia~~------la~---------~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~ 80 (279)
T 3sju_A 19 SHMSRPQTAFVTGVSSGIGLAVART------LAA---------RGIAVYGCARDAKNVSAAVDGLRAA---GHDVDGSSC 80 (279)
T ss_dssp ------CEEEEESTTSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHTT---TCCEEEEEC
T ss_pred ccccCCCEEEEeCCCCHHHHHHHHH------HHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEC
Confidence 4567889999988877667655443 233 3667777777776666665555443 455656666
Q ss_pred CCCHHHHHHHHh------cCCCcEEEEChH
Q 011963 292 GAAIDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 292 g~~~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
+.........+- -+++|+||-..|
T Consensus 81 Dv~d~~~v~~~~~~~~~~~g~id~lv~nAg 110 (279)
T 3sju_A 81 DVTSTDEVHAAVAAAVERFGPIGILVNSAG 110 (279)
T ss_dssp CTTCHHHHHHHHHHHHHHHCSCCEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence 655444333221 136899998776
No 299
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=52.28 E-value=10 Score=37.51 Aligned_cols=25 Identities=0% Similarity=-0.182 Sum_probs=18.4
Q ss_pred HHHHHhcCCcEE--EEcCCCcchhHHHH
Q 011963 210 FWKCYSSAKDIL--ETSGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~dvl--~~A~TG~SGKTlaf 235 (474)
.+..++.|.+.. +-.+|| ||||...
T Consensus 81 lv~~~l~G~n~tifAYGqTG-SGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTG-AGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTT-SSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCC-CCCCEEe
Confidence 345678898644 455999 9999875
No 300
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=52.23 E-value=8.7 Score=38.27 Aligned_cols=25 Identities=0% Similarity=-0.100 Sum_probs=19.2
Q ss_pred HHHHHhcCCcEEE--EcCCCcchhHHHH
Q 011963 210 FWKCYSSAKDILE--TSGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~dvl~--~A~TG~SGKTlaf 235 (474)
.+..++.|.+..+ ..+|| ||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTG-SGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTG-SGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTT-SSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCC-CCCeEee
Confidence 4567789986544 45999 9999875
No 301
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=52.04 E-value=10 Score=37.61 Aligned_cols=25 Identities=4% Similarity=0.045 Sum_probs=18.6
Q ss_pred HHHHHhcCCcE--EEEcCCCcchhHHHH
Q 011963 210 FWKCYSSAKDI--LETSGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~dv--l~~A~TG~SGKTlaf 235 (474)
.+..++.|.+. ++-.+|| ||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTG-SGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATG-AGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTT-SSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCC-CCceeee
Confidence 44567889865 4445999 9999875
No 302
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=52.00 E-value=10 Score=37.44 Aligned_cols=25 Identities=0% Similarity=-0.152 Sum_probs=18.7
Q ss_pred HHHHHhcCCcE--EEEcCCCcchhHHHH
Q 011963 210 FWKCYSSAKDI--LETSGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~dv--l~~A~TG~SGKTlaf 235 (474)
.+..++.|.+. ++-.+|| ||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTG-SGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTA-SGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTT-SSHHHHH
T ss_pred HHHHHHcCCccceeeecCCC-CCCCeEE
Confidence 45667889864 4456999 9999876
No 303
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=51.95 E-value=10 Score=37.71 Aligned_cols=25 Identities=0% Similarity=-0.112 Sum_probs=18.3
Q ss_pred HHHHHhcCCcEE--EEcCCCcchhHHHH
Q 011963 210 FWKCYSSAKDIL--ETSGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~dvl--~~A~TG~SGKTlaf 235 (474)
.+..++.|.+.. +..+|| ||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTG-SGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTG-AGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTT-SSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCC-CCCceEe
Confidence 345668898644 455999 9999765
No 304
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=51.08 E-value=10 Score=37.48 Aligned_cols=24 Identities=0% Similarity=-0.222 Sum_probs=17.8
Q ss_pred HHHHhcCCcE--EEEcCCCcchhHHHH
Q 011963 211 WKCYSSAKDI--LETSGSSSTIVQIAW 235 (474)
Q Consensus 211 i~~~l~g~dv--l~~A~TG~SGKTlaf 235 (474)
+..++.|.+. ++..+|| ||||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTG-SGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTG-AGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTT-SSHHHHH
T ss_pred HHHHhCCCcceEEEECCCC-CCcceEe
Confidence 4456888864 4556999 9999875
No 305
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=51.08 E-value=10 Score=30.10 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=25.1
Q ss_pred CCcEEEEEccchhHHHHHHHHhhCCCc
Q 011963 433 PLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (474)
Q Consensus 433 ~~k~LVF~~s~~~a~~l~~~L~~~gi~ 459 (474)
..+++|||.+-.++...+..|...||.
T Consensus 58 ~~~ivvyc~~g~rs~~a~~~L~~~G~~ 84 (108)
T 1gmx_A 58 DTPVMVMCYHGNSSKGAAQYLLQQGYD 84 (108)
T ss_dssp TSCEEEECSSSSHHHHHHHHHHHHTCS
T ss_pred CCCEEEEcCCCchHHHHHHHHHHcCCc
Confidence 679999999999999999999999995
No 306
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=50.75 E-value=58 Score=30.14 Aligned_cols=83 Identities=17% Similarity=0.093 Sum_probs=50.8
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||+..+||-|..+|-. +.. .|..++++.-..+-+.++...+... +-++..+..+..
T Consensus 2 l~~k~~lVTGas~GIG~aia~~------la~---------~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dv~ 63 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARE------LGV---------AGAKILLGARRQARIEAIATEIRDA---GGTALAQVLDVT 63 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHH------HHH---------TTCEEEEEESSHHHHHHHHHHHHHT---TCEEEEEECCTT
T ss_pred CCCCEEEEeCCccHHHHHHHHH------HHH---------CCCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEEcCCC
Confidence 4677788887776567655433 233 3667777777766666666555544 455666666665
Q ss_pred HHHHHHHHh------cCCCcEEEEChH
Q 011963 295 IDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
.......+- -+++|+||-..|
T Consensus 64 d~~~v~~~~~~~~~~~g~iD~lVnnAG 90 (264)
T 3tfo_A 64 DRHSVAAFAQAAVDTWGRIDVLVNNAG 90 (264)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 444433331 136899998765
No 307
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=50.36 E-value=8.8 Score=37.91 Aligned_cols=25 Identities=0% Similarity=-0.064 Sum_probs=18.6
Q ss_pred HHHHHhcCCcEE--EEcCCCcchhHHHH
Q 011963 210 FWKCYSSAKDIL--ETSGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~dvl--~~A~TG~SGKTlaf 235 (474)
.+..++.|.+.. +-.+|| ||||...
T Consensus 76 lv~~~l~G~n~tifAYGqTG-SGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTG-SGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTT-SSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCC-CCCcEec
Confidence 345668898754 456999 9999876
No 308
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=50.29 E-value=1.7e+02 Score=27.58 Aligned_cols=50 Identities=12% Similarity=0.225 Sum_probs=26.6
Q ss_pred CcceEEeccccccC-C---hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHh
Q 011963 330 GVSLLVVDRLDSLS-K---GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNL 379 (474)
Q Consensus 330 ~l~~lViDEad~ll-~---~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~ 379 (474)
+.+++|||++-.+. + ...+..+...+.+..-++++.++........++.+
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~ 233 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAF 233 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHH
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHHH
Confidence 45789999985443 3 34444444444333334556776544433444433
No 309
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=50.16 E-value=11 Score=28.92 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=25.1
Q ss_pred CcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 434 LKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 434 ~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
.+++|||.+-..+...+..|...||.+
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v 80 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEA 80 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCE
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcE
Confidence 789999999999999999999999974
No 310
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=49.98 E-value=14 Score=38.49 Aligned_cols=27 Identities=0% Similarity=-0.064 Sum_probs=19.7
Q ss_pred hHHHHH-HHhcCCcEEEEcCCCcchhHHH
Q 011963 207 GIEFWK-CYSSAKDILETSGSSSTIVQIA 234 (474)
Q Consensus 207 Q~~~i~-~~l~g~dvl~~A~TG~SGKTla 234 (474)
+...+. .+..|..++++.||| ||||..
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptG-SGKTTl 276 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETA-SGKTTT 276 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTT-SSHHHH
T ss_pred HHHHHHHHHhCCCEEEEECCCC-CCHHHH
Confidence 334343 345778999999999 999853
No 311
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=49.97 E-value=10 Score=37.83 Aligned_cols=25 Identities=4% Similarity=-0.165 Sum_probs=18.0
Q ss_pred HHHHHhcCCcEE--EEcCCCcchhHHHH
Q 011963 210 FWKCYSSAKDIL--ETSGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~dvl--~~A~TG~SGKTlaf 235 (474)
.+..++.|.+.. +..+|| ||||...
T Consensus 92 lv~~~l~G~n~tifAYGqTG-SGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTG-TGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTT-SSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCC-CCcceec
Confidence 345567888644 455999 9999765
No 312
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=49.78 E-value=7.3 Score=39.53 Aligned_cols=71 Identities=15% Similarity=0.194 Sum_probs=50.9
Q ss_pred CCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCc
Q 011963 255 TGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGV 331 (474)
Q Consensus 255 ~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l 331 (474)
.+.++||++++++.+..+...+. +..++|+.+.... ...+.++.++|||+|- +-..++++.++
T Consensus 348 ~~~k~lvF~~~~~~~~~l~~~l~--------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~------~~~~Gldlp~~ 413 (472)
T 2fwr_A 348 RKDKIIIFTRHNELVYRISKVFL--------IPAITHRTSREEREEILEGFRTGRFRAIVSSQ------VLDEGIDVPDA 413 (472)
T ss_dssp SSSCBCCBCSCHHHHHHHHHHTT--------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSS------CCCSSSCSCCB
T ss_pred CCCcEEEEECCHHHHHHHHHHhC--------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcC------chhcCcccccC
Confidence 35689999999999888877653 3346777764433 4455566799999993 22468899999
Q ss_pred ceEEeccc
Q 011963 332 SLLVVDRL 339 (474)
Q Consensus 332 ~~lViDEa 339 (474)
.++|+-..
T Consensus 414 ~~Vi~~~~ 421 (472)
T 2fwr_A 414 NVGVIMSG 421 (472)
T ss_dssp SEEEEECC
T ss_pred cEEEEECC
Confidence 99887443
No 313
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=49.16 E-value=12 Score=37.64 Aligned_cols=25 Identities=0% Similarity=-0.130 Sum_probs=18.6
Q ss_pred HHHHHhcCCc--EEEEcCCCcchhHHHH
Q 011963 210 FWKCYSSAKD--ILETSGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~d--vl~~A~TG~SGKTlaf 235 (474)
.+..++.|.+ |++-.+|| ||||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTG-SGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTG-SGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTT-SSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCC-CCCCeEe
Confidence 4556788986 44556999 9999875
No 314
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=49.06 E-value=1.3e+02 Score=29.12 Aligned_cols=23 Identities=4% Similarity=0.010 Sum_probs=16.9
Q ss_pred CCcEEEEEccCCccHHHHHHHhh
Q 011963 358 KPHTVVFNDCLTYTSVPAVQNLL 380 (474)
Q Consensus 358 ~~q~llfSAT~~~~v~~l~~~~l 380 (474)
..+++..||.-...+.++...+.
T Consensus 257 ~~~vi~iSA~~g~Gi~~L~~~i~ 279 (355)
T 3p32_A 257 RPPVLTMSAVEGRGLAELWDTVE 279 (355)
T ss_dssp CCCEEEEBGGGTBSHHHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHH
Confidence 46789999987777777666553
No 315
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=48.91 E-value=1.5e+02 Score=26.68 Aligned_cols=176 Identities=10% Similarity=0.025 Sum_probs=85.0
Q ss_pred EEEEEeccH--HHHHHHHHHHHhc-ccCCcEEEEEecCCCH---HHHHHHHhcCCCcEEEEChHHH-HHHHHcCCCCCCC
Q 011963 258 FLLFLVSSQ--EKAAKVRSVCKPL-KAFGIHTVSLHPGAAI---DHQITGLRSCEPEFLVSTPERL-LKLVSLKAIDVSG 330 (474)
Q Consensus 258 ~alil~Ptr--eLa~Qi~~~~~~l-~~~~i~v~~~~gg~~~---~~q~~~l~~~~~~IlV~TP~rL-~~ll~~~~~~l~~ 330 (474)
..-|++|.. ..-.++...+... ...|+.+..+... +. ....+.+...++|-|| .|... ...+.. .+
T Consensus 7 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI-~~~~~~~~~~~~-----~~ 79 (280)
T 3gyb_A 7 LIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL-TSQAGTDPITSALSMRPDGII-IAQDIPDFTVPD-----SL 79 (280)
T ss_dssp EEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS-SSCSSSCHHHHHHTTCCSEEE-EESCC-------------C
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC-CchHHHHHHHHHHhCCCCEEE-ecCCCChhhHhh-----cC
Confidence 444455542 1233444444443 4448887776655 32 2234445444788887 44322 122222 56
Q ss_pred cceEEecccc---ccCC----------hhHHHHHHhhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCccccc
Q 011963 331 VSLLVVDRLD---SLSK----------GDTLSLIRQSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQS 397 (474)
Q Consensus 331 l~~lViDEad---~ll~----------~~~l~~Il~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~ 397 (474)
+-++++|... .-+. ....+.+++. ...++.+++..... ......-|..- +.- . .
T Consensus 80 iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~-~~~R~~gf~~~----l~~----~--~ 146 (280)
T 3gyb_A 80 PPFVIAGTRITQASTHDSVANDDFRGAEIATKHLIDL--GHTHIAHLRVGSGA-GLRRFESFEAT----MRA----H--G 146 (280)
T ss_dssp CCEEEESCCCSSSCSTTEEEECHHHHHHHHHHHHHHT--TCCSEEEECCSSHH-HHHHHHHHHHH----HHH----T--T
T ss_pred CCEEEECCCCCCCCCCCEEEechHHHHHHHHHHHHHC--CCCeEEEEeCCCch-HHHHHHHHHHH----HHH----c--C
Confidence 7788887644 1111 2223333332 45677777765443 22222222110 000 0 0
Q ss_pred CCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 398 ACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 398 ~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
..+...++...... ...+..+..++..+ +.+.-|||.+...|..+...|...|+.+
T Consensus 147 ~~~~~~~~~~~~~~---~~~~~~~~~~l~~~----~~~~ai~~~~d~~a~g~~~al~~~g~~v 202 (280)
T 3gyb_A 147 LEPLSNDYLGPAVE---HAGYTETLALLKEH----PEVTAIFSSNDITAIGALGAARELGLRV 202 (280)
T ss_dssp CCCEECCCCSCCCH---HHHHHHHHHHHHHC----TTCCEEEESSHHHHHHHHHHHHHHTCCT
T ss_pred cCCCcccccCCCCH---HHHHHHHHHHHhCC----CCCCEEEECChHHHHHHHHHHHHcCCCC
Confidence 00010011122111 22235566666554 3577899999999999999999999874
No 316
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=48.71 E-value=10 Score=38.00 Aligned_cols=23 Identities=0% Similarity=-0.122 Sum_probs=17.5
Q ss_pred HHHhcCCcEE--EEcCCCcchhHHHH
Q 011963 212 KCYSSAKDIL--ETSGSSSTIVQIAW 235 (474)
Q Consensus 212 ~~~l~g~dvl--~~A~TG~SGKTlaf 235 (474)
..++.|.+.. +-.+|| ||||.+.
T Consensus 92 ~~~l~G~N~tifAYGqTG-SGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTG-AGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTT-SSHHHHH
T ss_pred HHhhcCceeeEeeecCCC-CCCCeEe
Confidence 4578898644 456999 9999875
No 317
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=48.32 E-value=1.8e+02 Score=27.28 Aligned_cols=38 Identities=8% Similarity=0.091 Sum_probs=30.5
Q ss_pred HHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 419 ~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
..+..++..+ ..+.-|||.+...|-.+...|...|+.+
T Consensus 231 ~~~~~ll~~~----~~~~ai~~~nd~~A~g~~~al~~~G~~v 268 (338)
T 3dbi_A 231 EGVEMLLERG----AKFSALVASNDDMAIGAMKALHERGVAV 268 (338)
T ss_dssp HHHHHHHHTT----CCCSEEEESSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCC----CCCeEEEECChHHHHHHHHHHHHcCCCC
Confidence 5566666543 4678899999999999999999999875
No 318
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=48.31 E-value=8.3 Score=35.12 Aligned_cols=17 Identities=18% Similarity=-0.038 Sum_probs=14.3
Q ss_pred cCCcEEEEcCCCcchhHH
Q 011963 216 SAKDILETSGSSSTIVQI 233 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTl 233 (474)
.|+-+++..||| +|||-
T Consensus 33 ~g~~ilI~GpsG-sGKSt 49 (205)
T 2qmh_A 33 YGLGVLITGDSG-VGKSE 49 (205)
T ss_dssp TTEEEEEECCCT-TTTHH
T ss_pred CCEEEEEECCCC-CCHHH
Confidence 456789999999 99973
No 319
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=48.24 E-value=1.8e+02 Score=27.41 Aligned_cols=18 Identities=11% Similarity=-0.188 Sum_probs=13.3
Q ss_pred CCcEEEEcCCCcchhHHHH
Q 011963 217 AKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (474)
++-++++.++| +|||...
T Consensus 98 ~~vi~i~G~~G-~GKTT~~ 115 (297)
T 1j8m_F 98 PYVIMLVGVQG-TGKTTTA 115 (297)
T ss_dssp SEEEEEECSSC-SSTTHHH
T ss_pred CeEEEEECCCC-CCHHHHH
Confidence 44567778999 9998544
No 320
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=48.23 E-value=38 Score=34.26 Aligned_cols=17 Identities=12% Similarity=-0.167 Sum_probs=13.5
Q ss_pred CcEEEEcCCCcchhHHHH
Q 011963 218 KDILETSGSSSTIVQIAW 235 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf 235 (474)
+-++++.++| +|||...
T Consensus 100 ~vI~ivG~~G-vGKTTla 116 (432)
T 2v3c_C 100 NVILLVGIQG-SGKTTTA 116 (432)
T ss_dssp CCEEEECCSS-SSTTHHH
T ss_pred eEEEEECCCC-CCHHHHH
Confidence 4688889999 9998543
No 321
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=47.43 E-value=1.1e+02 Score=27.62 Aligned_cols=84 Identities=13% Similarity=0.017 Sum_probs=52.4
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||+..+||-|..+|-. +.. .+..++++.-+.+-..++...+... +-++..+..+..
T Consensus 7 ~~~k~vlITGas~giG~~~a~~------l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 68 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEA------LAR---------EGAAVVVADINAEAAEAVAKQIVAD---GGTAISVAVDVS 68 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCEEEEEECCTT
T ss_pred cCCCEEEEECCCChHHHHHHHH------HHH---------CCCEEEEEcCCHHHHHHHHHHHHhc---CCcEEEEEccCC
Confidence 4678889988777666655443 333 3667777777777766666665543 445666666665
Q ss_pred HHHHHHHHhc------CCCcEEEEChHH
Q 011963 295 IDHQITGLRS------CEPEFLVSTPER 316 (474)
Q Consensus 295 ~~~q~~~l~~------~~~~IlV~TP~r 316 (474)
.......+-. +++|+||-..|.
T Consensus 69 ~~~~~~~~~~~~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 69 DPESAKAMADRTLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 4444333321 368999987653
No 322
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=47.41 E-value=32 Score=33.63 Aligned_cols=39 Identities=10% Similarity=0.073 Sum_probs=25.2
Q ss_pred cEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccH
Q 011963 219 DILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQ 266 (474)
Q Consensus 219 dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Ptr 266 (474)
-+++..|.| +||| .+++.++...... + .+-.++||..-.
T Consensus 30 iteI~G~pG-sGKT-tL~Lq~~~~~~~~----g---~g~~vlyId~E~ 68 (333)
T 3io5_A 30 LLILAGPSK-SFKS-NFGLTMVSSYMRQ----Y---PDAVCLFYDSEF 68 (333)
T ss_dssp EEEEEESSS-SSHH-HHHHHHHHHHHHH----C---TTCEEEEEESSC
T ss_pred eEEEECCCC-CCHH-HHHHHHHHHHHhc----C---CCceEEEEeccc
Confidence 367889999 9999 4555565554432 0 245788887533
No 323
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=47.30 E-value=13 Score=37.96 Aligned_cols=25 Identities=4% Similarity=-0.057 Sum_probs=18.3
Q ss_pred HHHHHhcCCcE--EEEcCCCcchhHHHH
Q 011963 210 FWKCYSSAKDI--LETSGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~dv--l~~A~TG~SGKTlaf 235 (474)
.+..++.|.+. ++..+|| ||||...
T Consensus 128 lv~~~l~GyN~tIfAYGQTG-SGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTG-SGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTT-SSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCC-CCCCEEe
Confidence 34556889864 4455999 9999876
No 324
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=47.18 E-value=46 Score=37.61 Aligned_cols=94 Identities=9% Similarity=-0.022 Sum_probs=60.3
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccC------------------------------------CcEEEEEecCCCHHHHH
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAF------------------------------------GIHTVSLHPGAAIDHQI 299 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~------------------------------------~i~v~~~~gg~~~~~q~ 299 (474)
...+||.++|+.-+..+...+..+... ...+..++||.+...+.
T Consensus 343 ~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~ 422 (1010)
T 2xgj_A 343 YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 422 (1010)
T ss_dssp CCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHH
Confidence 447999999999999888877653100 11278899998865543
Q ss_pred ---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccc-------cCChhHHHHHHhhCC
Q 011963 300 ---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS-------LSKGDTLSLIRQSIS 356 (474)
Q Consensus 300 ---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~-------ll~~~~l~~Il~~l~ 356 (474)
..+..+...|||||.- -..++++..+.+ ||+.... -+....+.+......
T Consensus 423 ~ve~~F~~G~ikVLVAT~~------la~GIDiP~~~v-VI~~~~kfd~~~~rp~s~~~y~Qr~GRAG 482 (1010)
T 2xgj_A 423 VIEILFQEGFLKVLFATET------FSIGLNMPAKTV-VFTSVRKWDGQQFRWVSGGEYIQMSGRAG 482 (1010)
T ss_dssp HHHHHHHTTCCSEEEEEGG------GGGSTTCCBSEE-EESCSEEECSSCEEECCHHHHHHHHTTBC
T ss_pred HHHHHHhcCCCcEEEEehH------hhccCCCCCceE-EEeCCcccCCcCCccCCHHHHhHhhhhcc
Confidence 3445667999999962 235778888766 5554322 222445555555443
No 325
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=47.15 E-value=21 Score=35.44 Aligned_cols=36 Identities=14% Similarity=-0.023 Sum_probs=24.8
Q ss_pred CcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEec
Q 011963 218 KDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS 264 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~P 264 (474)
.-+++.+|.| +||| +|++.++..+... +-.++|+..
T Consensus 75 ~li~I~G~pG-sGKT-tlal~la~~~~~~---------g~~vlyi~~ 110 (366)
T 1xp8_A 75 RITEIYGPES-GGKT-TLALAIVAQAQKA---------GGTCAFIDA 110 (366)
T ss_dssp SEEEEEESTT-SSHH-HHHHHHHHHHHHT---------TCCEEEEES
T ss_pred cEEEEEcCCC-CChH-HHHHHHHHHHHHC---------CCeEEEEEC
Confidence 4578889999 9999 5666666555432 336677764
No 326
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=46.81 E-value=1.7e+02 Score=26.59 Aligned_cols=38 Identities=16% Similarity=0.017 Sum_probs=29.4
Q ss_pred HHHHH--HhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 419 QVLDH--AYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 419 ~lL~~--ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
..+.. ++..+ ..+.-|||.+...|..+...|+..|+.+
T Consensus 171 ~~~~~~~~l~~~----~~~~ai~~~~d~~A~g~~~al~~~g~~v 210 (285)
T 3c3k_A 171 GKLATFSLLKSA----VKPDAIFAISDVLAAGAIQALTESGLSI 210 (285)
T ss_dssp HHHHHHHHHSSS----SCCSEEEESSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHcCC----CCCeEEEECCHHHHHHHHHHHHHcCCCC
Confidence 45555 66543 3577899999999999999999999864
No 327
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=46.74 E-value=72 Score=29.29 Aligned_cols=87 Identities=17% Similarity=0.139 Sum_probs=49.8
Q ss_pred HHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEE-eccHHHHHHHHHHHHhcccCCcEEEEE
Q 011963 211 WKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL-VSSQEKAAKVRSVCKPLKAFGIHTVSL 289 (474)
Q Consensus 211 i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil-~PtreLa~Qi~~~~~~l~~~~i~v~~~ 289 (474)
+..+..++-+||+..+||-|..+|-. +.. .+..++++ ....+....+...+... +-++..+
T Consensus 20 ~~~m~~~k~vlITGas~gIG~a~a~~------l~~---------~G~~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 81 (272)
T 4e3z_A 20 FQSMSDTPVVLVTGGSRGIGAAVCRL------AAR---------QGWRVGVNYAANREAADAVVAAITES---GGEAVAI 81 (272)
T ss_dssp ----CCSCEEEETTTTSHHHHHHHHH------HHH---------TTCEEEEEESSCHHHHHHHHHHHHHT---TCEEEEE
T ss_pred hhhccCCCEEEEECCCchHHHHHHHH------HHH---------CCCEEEEEcCCChhHHHHHHHHHHhc---CCcEEEE
Confidence 34456678788877777566655443 333 25566555 66777766666665544 4566666
Q ss_pred ecCCCHHHHHHHHhc------CCCcEEEEChH
Q 011963 290 HPGAAIDHQITGLRS------CEPEFLVSTPE 315 (474)
Q Consensus 290 ~gg~~~~~q~~~l~~------~~~~IlV~TP~ 315 (474)
..+.........+.. +++|+||-..|
T Consensus 82 ~~Dl~~~~~v~~~~~~~~~~~g~id~li~nAg 113 (272)
T 4e3z_A 82 PGDVGNAADIAAMFSAVDRQFGRLDGLVNNAG 113 (272)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred EcCCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 666654443332211 36899998765
No 328
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=46.47 E-value=1.7e+02 Score=26.52 Aligned_cols=38 Identities=13% Similarity=-0.008 Sum_probs=30.3
Q ss_pred HHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCc
Q 011963 418 IQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (474)
Q Consensus 418 ~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~ 459 (474)
+..+..++..+ ..+..|||.+...|..+...|...|+.
T Consensus 183 ~~~~~~~l~~~----~~~~ai~~~~d~~a~g~~~al~~~g~~ 220 (293)
T 3l6u_A 183 ERVMRQVIDSG----IPFDAVYCHNDDIAMGVLEALKKAKIS 220 (293)
T ss_dssp HHHHHHHHHTT----CCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhC----CCCCEEEECCchHHHHHHHHHHhCCCC
Confidence 35666666654 357789999999999999999999984
No 329
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=46.23 E-value=15 Score=42.18 Aligned_cols=57 Identities=5% Similarity=-0.066 Sum_probs=41.9
Q ss_pred EEEEcCCchhHHHHHHHHHHHHhh-ccCCCCCCcEEEEEccch-hHHHHHHHHhhCCCccc
Q 011963 403 SVNVCASDEEKILKGIQVLDHAYG-DHFHSEPLKVLYIVGKDS-KFQNLVSTLKCKGYSIS 461 (474)
Q Consensus 403 ~~~~~~~~~~K~~~l~~lL~~ll~-~~~~~~~~k~LVF~~s~~-~a~~l~~~L~~~gi~v~ 461 (474)
.++.+.+...-...+...|..++. .+. ...-+.|.|.+.. .+..+...|...||++.
T Consensus 313 ~i~~~~~~~~Ea~~ia~~I~~l~~~~g~--~~~diAVL~R~~~~~~~~i~~~L~~~gIP~~ 371 (1166)
T 3u4q_B 313 TVMQAANRRAELEGIAREIHALVREKGY--RYKDVAILARQPEDYKDMVKEVFADYEIPYF 371 (1166)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHTSCC--CGGGEEEEESCGGGTHHHHHHHHHHTTCCEE
T ss_pred EEEEcCChHHHHHHHHHHHHHHHHhcCC--ChhheEEEeCChHHHHHHHHHHHHHcCCCEE
Confidence 445565555556677777777776 332 2466899999974 89999999999999987
No 330
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=46.21 E-value=14 Score=31.37 Aligned_cols=16 Identities=0% Similarity=-0.176 Sum_probs=14.0
Q ss_pred CcEEEEcCCCcchhHHH
Q 011963 218 KDILETSGSSSTIVQIA 234 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (474)
..+++..|+| +|||..
T Consensus 44 ~~~ll~G~~G-~GKT~l 59 (195)
T 1jbk_A 44 NNPVLIGEPG-VGKTAI 59 (195)
T ss_dssp CEEEEECCTT-SCHHHH
T ss_pred CceEEECCCC-CCHHHH
Confidence 5799999999 999954
No 331
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=46.12 E-value=16 Score=30.70 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=25.0
Q ss_pred CCcEEEEEccchhHHHHHHHHhhCCCc
Q 011963 433 PLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (474)
Q Consensus 433 ~~k~LVF~~s~~~a~~l~~~L~~~gi~ 459 (474)
..+++|||.+...+...+..|...||.
T Consensus 56 ~~~ivvyC~~g~rs~~aa~~L~~~G~~ 82 (141)
T 3ilm_A 56 SRDIYVYGAGDEQTSQAVNLLRSAGFE 82 (141)
T ss_dssp TSEEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCChHHHHHHHHHHHcCCC
Confidence 568999999999999999999999995
No 332
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=46.09 E-value=11 Score=37.74 Aligned_cols=25 Identities=0% Similarity=-0.142 Sum_probs=18.4
Q ss_pred HHHHHhcCCcEEE--EcCCCcchhHHHH
Q 011963 210 FWKCYSSAKDILE--TSGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~dvl~--~A~TG~SGKTlaf 235 (474)
.+..++.|.+..+ -.+|| ||||...
T Consensus 107 lv~~~l~G~N~tifAYGqTG-SGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTG-SGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTT-SSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCC-CCCceEe
Confidence 3456688986544 45999 9999875
No 333
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=45.86 E-value=11 Score=30.86 Aligned_cols=29 Identities=7% Similarity=-0.031 Sum_probs=25.7
Q ss_pred CCcEEEEEccchh--HHHHHHHHhhCCCccc
Q 011963 433 PLKVLYIVGKDSK--FQNLVSTLKCKGYSIS 461 (474)
Q Consensus 433 ~~k~LVF~~s~~~--a~~l~~~L~~~gi~v~ 461 (474)
..+++|||.+-.+ +...+..|...||+|.
T Consensus 71 ~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~ 101 (124)
T 3flh_A 71 AKTYVVYDWTGGTTLGKTALLVLLSAGFEAY 101 (124)
T ss_dssp TSEEEEECSSSSCSHHHHHHHHHHHHTCEEE
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCCeEE
Confidence 6789999999887 8999999999999854
No 334
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=45.61 E-value=1.9e+02 Score=26.93 Aligned_cols=38 Identities=11% Similarity=0.247 Sum_probs=30.2
Q ss_pred HHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 419 ~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
..+..++..+ ..+.-|||.+...|..+...|...|+.+
T Consensus 228 ~~~~~ll~~~----~~~~ai~~~nd~~A~g~~~al~~~G~~v 265 (332)
T 2hsg_A 228 EAVEKLLEED----EKPTAIFVGTDEMALGVIHGAQDRGLNV 265 (332)
T ss_dssp HHHHHHHHSS----SCCSEEEESSHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHcCC----CCCeEEEECChHHHHHHHHHHHHcCCCC
Confidence 5566666554 3577899999999999999999999864
No 335
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=45.56 E-value=21 Score=31.73 Aligned_cols=16 Identities=25% Similarity=-0.083 Sum_probs=13.2
Q ss_pred CCcEEEEcCCCcchhHH
Q 011963 217 AKDILETSGSSSTIVQI 233 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTl 233 (474)
|.-+++.+|+| +|||.
T Consensus 23 G~~~~i~G~~G-sGKTt 38 (235)
T 2w0m_A 23 GFFIALTGEPG-TGKTI 38 (235)
T ss_dssp TCEEEEECSTT-SSHHH
T ss_pred CCEEEEEcCCC-CCHHH
Confidence 45678889999 99994
No 336
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=45.39 E-value=1.4e+02 Score=30.10 Aligned_cols=77 Identities=6% Similarity=0.025 Sum_probs=53.5
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcC-CCc-EEEEChHHHHHHHHcCCCCCCC
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSC-EPE-FLVSTPERLLKLVSLKAIDVSG 330 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~-~~~-IlV~TP~rL~~ll~~~~~~l~~ 330 (474)
+.++||.+.+++.+..+...+... .|+.+..++|+++..... ..+.++ .+. |||+|- . -..++++..
T Consensus 341 ~~k~lvF~~~~~~~~~l~~~l~~~--~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~-~-----~~~Glnl~~ 412 (500)
T 1z63_A 341 GDKIAIFTQFVDMGKIIRNIIEKE--LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK-A-----GGFGINLTS 412 (500)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHH--HTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECC-C-----C-CCCCCTT
T ss_pred CCcEEEEEehHHHHHHHHHHHHHh--hCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecc-c-----ccCCCchhh
Confidence 568999999999998888877653 256777899998865443 344453 244 566662 1 135788999
Q ss_pred cceEEecccc
Q 011963 331 VSLLVVDRLD 340 (474)
Q Consensus 331 l~~lViDEad 340 (474)
+.++|+=+.+
T Consensus 413 ~~~vi~~d~~ 422 (500)
T 1z63_A 413 ANRVIHFDRW 422 (500)
T ss_dssp CSEEEESSCC
T ss_pred CCEEEEeCCC
Confidence 9999986554
No 337
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=45.26 E-value=12 Score=30.85 Aligned_cols=27 Identities=7% Similarity=0.121 Sum_probs=25.1
Q ss_pred CCcEEEEEccchhHHHHHHHHhhCCCc
Q 011963 433 PLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (474)
Q Consensus 433 ~~k~LVF~~s~~~a~~l~~~L~~~gi~ 459 (474)
..++||||.+-.++...+..|...||.
T Consensus 82 ~~~ivvyC~~G~rs~~aa~~L~~~G~~ 108 (129)
T 1tq1_A 82 SDNIIVGCQSGGRSIKATTDLLHAGFT 108 (129)
T ss_dssp TSSEEEEESSCSHHHHHHHHHHHHHCC
T ss_pred CCeEEEECCCCcHHHHHHHHHHHcCCC
Confidence 679999999999999999999999995
No 338
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=44.80 E-value=1.5e+02 Score=31.43 Aligned_cols=76 Identities=13% Similarity=0.190 Sum_probs=52.9
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHH---HHHhcCCCc---EEEEChHHHHHHHHcCCCCCC
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQI---TGLRSCEPE---FLVSTPERLLKLVSLKAIDVS 329 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~---~~l~~~~~~---IlV~TP~rL~~ll~~~~~~l~ 329 (474)
+-++||.+.++..+..+...+... |+.+..++|+++..... ..+..+... +||+|- . -..++++.
T Consensus 416 ~~k~lIFs~~~~~~~~l~~~l~~~---g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~-a-----~g~Glnl~ 486 (644)
T 1z3i_X 416 SDKVVLVSNYTQTLDLFEKLCRNR---RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK-A-----GGCGLNLI 486 (644)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHH---TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG-G-----SCTTCCCT
T ss_pred CCEEEEEEccHHHHHHHHHHHHHC---CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc-c-----ccCCcccc
Confidence 568999999999988888776654 78899999998865543 344442222 556552 1 23578888
Q ss_pred CcceEEecccc
Q 011963 330 GVSLLVVDRLD 340 (474)
Q Consensus 330 ~l~~lViDEad 340 (474)
.+..+|+=+.+
T Consensus 487 ~a~~Vi~~d~~ 497 (644)
T 1z3i_X 487 GANRLVMFDPD 497 (644)
T ss_dssp TEEEEEECSCC
T ss_pred cCCEEEEECCC
Confidence 88888875543
No 339
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=44.75 E-value=94 Score=29.17 Aligned_cols=84 Identities=12% Similarity=0.030 Sum_probs=50.6
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||+..+||-|.-+|-. +.. .|..++++.-..+-..++...+... +.++..+..+..
T Consensus 29 l~gk~vlVTGas~gIG~~la~~------l~~---------~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dv~ 90 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATE------FAR---------RGARLVLSDVDQPALEQAVNGLRGQ---GFDAHGVVCDVR 90 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred cCCCEEEEeCCCCHHHHHHHHH------HHH---------CCCEEEEEECCHHHHHHHHHHHHhc---CCceEEEEccCC
Confidence 4678899988877667655443 233 3567777777666655555554433 455556666655
Q ss_pred HHHHHHHHhc------CCCcEEEEChHH
Q 011963 295 IDHQITGLRS------CEPEFLVSTPER 316 (474)
Q Consensus 295 ~~~q~~~l~~------~~~~IlV~TP~r 316 (474)
.......+-. +++|+||.+.|.
T Consensus 91 d~~~v~~~~~~~~~~~g~id~lvnnAg~ 118 (301)
T 3tjr_A 91 HLDEMVRLADEAFRLLGGVDVVFSNAGI 118 (301)
T ss_dssp CHHHHHHHHHHHHHHHSSCSEEEECCCC
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 4444333211 368999988763
No 340
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=44.69 E-value=1.1e+02 Score=28.17 Aligned_cols=86 Identities=15% Similarity=0.045 Sum_probs=53.3
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||+..+||-|..+|- .+.. .+..++++.-..+-..+....+......+.++..+.++..
T Consensus 9 l~~k~vlVTGas~gIG~aia~------~l~~---------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~ 73 (281)
T 3svt_A 9 FQDRTYLVTGGGSGIGKGVAA------GLVA---------AGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDIT 73 (281)
T ss_dssp CTTCEEEEETTTSHHHHHHHH------HHHH---------TTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTT
T ss_pred cCCCEEEEeCCCcHHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCC
Confidence 567888998877766665443 3333 3567777777777666666666655322336666767766
Q ss_pred HHHHHHHHh------cCCCcEEEEChH
Q 011963 295 IDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
.......+- -+++|+||-..|
T Consensus 74 ~~~~v~~~~~~~~~~~g~id~lv~nAg 100 (281)
T 3svt_A 74 NEDETARAVDAVTAWHGRLHGVVHCAG 100 (281)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 444433332 136899998765
No 341
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=44.57 E-value=1.1e+02 Score=31.59 Aligned_cols=50 Identities=12% Similarity=0.235 Sum_probs=26.5
Q ss_pred cceEEeccccccCC----hhHHH---HHHhhC-CCCC--cEEEEEccCCccHHHHHHHhh
Q 011963 331 VSLLVVDRLDSLSK----GDTLS---LIRQSI-SGKP--HTVVFNDCLTYTSVPAVQNLL 380 (474)
Q Consensus 331 l~~lViDEad~ll~----~~~l~---~Il~~l-~~~~--q~llfSAT~~~~v~~l~~~~l 380 (474)
.++++||=+-++-. ..++. .+.+.+ +..+ -+++++||........++.|.
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~ 435 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFH 435 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHH
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHH
Confidence 34666776655543 22333 333323 2222 256788887766556666654
No 342
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=44.29 E-value=13 Score=35.65 Aligned_cols=23 Identities=9% Similarity=-0.012 Sum_probs=18.5
Q ss_pred HHHHhcCCcEEEEcCCCcchhHHH
Q 011963 211 WKCYSSAKDILETSGSSSTIVQIA 234 (474)
Q Consensus 211 i~~~l~g~dvl~~A~TG~SGKTla 234 (474)
.-.+..|.++++..|+| +|||..
T Consensus 40 ~~~l~~~~~vll~G~pG-tGKT~l 62 (331)
T 2r44_A 40 LIGICTGGHILLEGVPG-LAKTLS 62 (331)
T ss_dssp HHHHHHTCCEEEESCCC-HHHHHH
T ss_pred HHHHHcCCeEEEECCCC-CcHHHH
Confidence 34456688999999999 999953
No 343
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=44.26 E-value=34 Score=41.61 Aligned_cols=54 Identities=7% Similarity=-0.102 Sum_probs=32.8
Q ss_pred HHHHHHHh------cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHH
Q 011963 208 IEFWKCYS------SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVR 273 (474)
Q Consensus 208 ~~~i~~~l------~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~ 273 (474)
...+..++ .|+.++++.|+| ||||..... ++..... .+-.++|+. .-++..+++
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~G-tGKT~la~~-~~~ea~k---------~Ge~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPES-SGKTTLTLQ-VIAAAQR---------EGKTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTT-SSHHHHHHH-HHHHHHT---------TTCCEEEEC-TTSCCCHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCC-CCHHHHHHH-HHHHHHH---------cCCeEEEEE-ccccHHHHH
Confidence 35555666 457999999999 999964432 2222222 255677774 444545555
No 344
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=44.25 E-value=1.1e+02 Score=27.89 Aligned_cols=83 Identities=13% Similarity=0.066 Sum_probs=50.5
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||...+||-|..+|-. +.. .|..++++.-..+-+.++...+... +-++..+..+..
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~------l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~ 71 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGT------FAK---------AGASVVVTDLKSEGAEAVAAAIRQA---GGKAIGLECNVT 71 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHH------HHH---------HTCEEEEEESSHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHH------HHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEECCCC
Confidence 5678888887777666654433 222 2557777777776666666665544 445555666655
Q ss_pred HHHHHHHHhc------CCCcEEEEChH
Q 011963 295 IDHQITGLRS------CEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~~------~~~~IlV~TP~ 315 (474)
.......+-. +++|+||-..|
T Consensus 72 d~~~v~~~~~~~~~~~g~id~lv~nAg 98 (256)
T 3gaf_A 72 DEQHREAVIKAALDQFGKITVLVNNAG 98 (256)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4433332211 36899998876
No 345
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=44.23 E-value=1.8e+02 Score=26.31 Aligned_cols=38 Identities=5% Similarity=-0.018 Sum_probs=29.1
Q ss_pred HHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 419 ~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
..+..++..+ ..+.-|||.+...|..+...|...|+.+
T Consensus 175 ~~~~~~l~~~----~~~~ai~~~~d~~a~g~~~al~~~g~~v 212 (291)
T 3egc_A 175 DGAIKVLTGA----DRPTALLTSSHRITEGAMQALNVLGLRY 212 (291)
T ss_dssp HHHHHHHTC-----CCCSEEEESSHHHHHHHHHHHHHHTCCB
T ss_pred HHHHHHHhCC----CCCcEEEECCcHHHHHHHHHHHHcCCCC
Confidence 3455555443 4577899999999999999999999874
No 346
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=44.19 E-value=14 Score=31.17 Aligned_cols=27 Identities=7% Similarity=0.142 Sum_probs=24.2
Q ss_pred CCcEEEEEccchhHHHHHHHHhhCCCc
Q 011963 433 PLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (474)
Q Consensus 433 ~~k~LVF~~s~~~a~~l~~~L~~~gi~ 459 (474)
..++||||.+-..+...+..|...||.
T Consensus 80 ~~~ivvyC~~G~rS~~aa~~L~~~G~~ 106 (148)
T 2fsx_A 80 ERPVIFLCRSGNRSIGAAEVATEAGIT 106 (148)
T ss_dssp -CCEEEECSSSSTHHHHHHHHHHTTCC
T ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCc
Confidence 578999999999999999999999995
No 347
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=44.01 E-value=20 Score=34.54 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=26.4
Q ss_pred CCcceEEeccccccCC---hhHHHHHHhhCCCCCcEEEEEcc
Q 011963 329 SGVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFNDC 367 (474)
Q Consensus 329 ~~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~llfSAT 367 (474)
.+-++|||||+|. ++ ...+..++...+.+..+++.|..
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~ 173 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDS 173 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 4567999999999 55 66777777776665555555443
No 348
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=43.61 E-value=26 Score=34.56 Aligned_cols=37 Identities=11% Similarity=0.004 Sum_probs=24.1
Q ss_pred CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEec
Q 011963 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS 264 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~P 264 (474)
|+-+++.+|.| +|||. +++.++..+.. .+..++|+..
T Consensus 63 G~ii~I~G~pG-sGKTt-Lal~la~~~~~---------~g~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPES-SGKTT-LTLQVIAAAQR---------EGKTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTT-SSHHH-HHHHHHHHHHH---------TTCCEEEEES
T ss_pred CeEEEEECCCC-CCHHH-HHHHHHHHHHH---------CCCeEEEEeC
Confidence 35678889999 99994 44555544443 2346777764
No 349
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=43.58 E-value=19 Score=31.55 Aligned_cols=36 Identities=11% Similarity=0.177 Sum_probs=27.9
Q ss_pred CcceEEeccccccCC---hhHHHHHHhhCCCCCcEEEEE
Q 011963 330 GVSLLVVDRLDSLSK---GDTLSLIRQSISGKPHTVVFN 365 (474)
Q Consensus 330 ~l~~lViDEad~ll~---~~~l~~Il~~l~~~~q~llfS 365 (474)
.-.++++||.+.-+| ...+..++..+....|+++.|
T Consensus 86 ~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivit 124 (173)
T 3kta_B 86 PAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVIT 124 (173)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEE
Confidence 347999999999999 666666776666667877765
No 350
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=43.46 E-value=17 Score=30.71 Aligned_cols=29 Identities=3% Similarity=0.041 Sum_probs=25.1
Q ss_pred CCcEEEEEccc--hhHHHHHHHHhhCCCccc
Q 011963 433 PLKVLYIVGKD--SKFQNLVSTLKCKGYSIS 461 (474)
Q Consensus 433 ~~k~LVF~~s~--~~a~~l~~~L~~~gi~v~ 461 (474)
..++||||.+- ..+..++..|...||+|.
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~ 102 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVK 102 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEE
Confidence 56899999987 689999999999999754
No 351
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=43.26 E-value=86 Score=28.61 Aligned_cols=83 Identities=17% Similarity=0.062 Sum_probs=50.9
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||+..+||-|..+|-. +.. .|..++++.-..+-..++...+... +-++..+..+..
T Consensus 27 l~~k~vlITGas~gIG~~la~~------l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 88 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIARK------LGS---------LGARVVLTARDVEKLRAVEREIVAA---GGEAESHACDLS 88 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCEEEEEECCTT
T ss_pred cCCCEEEEECCCChHHHHHHHH------HHH---------CCCEEEEEECCHHHHHHHHHHHHHh---CCceeEEEecCC
Confidence 5678888887777566655432 333 3567777777776666666555443 455666666665
Q ss_pred HHHHHHHHhc------CCCcEEEEChH
Q 011963 295 IDHQITGLRS------CEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~~------~~~~IlV~TP~ 315 (474)
....+..+.. +++|+||-..|
T Consensus 89 ~~~~v~~~~~~~~~~~g~id~lv~~Ag 115 (262)
T 3rkr_A 89 HSDAIAAFATGVLAAHGRCDVLVNNAG 115 (262)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4444333221 36899998765
No 352
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=43.21 E-value=1.3e+02 Score=27.34 Aligned_cols=84 Identities=13% Similarity=0.113 Sum_probs=52.6
Q ss_pred HhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 011963 214 YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293 (474)
Q Consensus 214 ~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~ 293 (474)
.+.|+-+||+..+||-|+.+|-. +.. .+..++++.-+.+-+.++...+... +.++..+..+.
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~------l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv 69 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARR------CAE---------QGADLVLAARTVERLEDVAKQVTDT---GRRALSVGTDI 69 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCT
T ss_pred CcCCcEEEEECCCcHHHHHHHHH------HHH---------CcCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEcCC
Confidence 36788899988877677755443 222 3667777777777666666655543 45566666666
Q ss_pred CHHHHHHHHh------cCCCcEEEEChH
Q 011963 294 AIDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 294 ~~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
........+- -+++|+||-..|
T Consensus 70 ~~~~~v~~~~~~~~~~~g~id~lv~nAg 97 (264)
T 3ucx_A 70 TDDAQVAHLVDETMKAYGRVDVVINNAF 97 (264)
T ss_dssp TCHHHHHHHHHHHHHHTSCCSEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence 5444433332 136899997754
No 353
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=42.78 E-value=28 Score=40.03 Aligned_cols=62 Identities=11% Similarity=-0.014 Sum_probs=39.9
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhh--cCCCCCCcEEEEEeccHHHHHHHHHHHHh
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEK--EGFSFTGPFLLFLVSSQEKAAKVRSVCKP 278 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~--~~~~~~~~~alil~PtreLa~Qi~~~~~~ 278 (474)
+.|.. +|.|.-| ||||.+-.-=++..|...... .......-+.|+|+=|+.=|.++...+..
T Consensus 15 l~g~~-lV~AsAG-SGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 15 LQGER-LIEASAG-TGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CSSCE-EEECCTT-SCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCE-EEEECCC-CCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 34544 9999999 999988776666656532100 00011345799999998877776665544
No 354
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=42.64 E-value=33 Score=32.44 Aligned_cols=43 Identities=14% Similarity=0.072 Sum_probs=30.5
Q ss_pred HHHHHHHhCCCCccccCCCchhh-HHHHHHHhcCC-----cEEEEcCCCcchhHHHHH
Q 011963 185 AIENAMRHDGVEQDNPLFVNSWG-IEFWKCYSSAK-----DILETSGSSSTIVQIAWI 236 (474)
Q Consensus 185 ~i~~~l~~~g~~~ptpi~~~~~Q-~~~i~~~l~g~-----dvl~~A~TG~SGKTlaf~ 236 (474)
.|.+.|+-.||. |+ + ..++-..+.|+ .+++..|.| +|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~-----~~~~~l~~~l~~~~~~~n~~~l~Gppg-tGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQ-----YAASVFLGWATKKFGKRNTIWLFGPAT-TGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HH-----HHHHHHHHHHTTCSTTCCEEEEECSTT-SSHHHHHH
T ss_pred HHHHHHHHcCCC---HH-----HHHHHHHHHHhCCCCCCcEEEEECCCC-CCHHHHHH
Confidence 566788888877 33 3 23355566664 599999999 99997653
No 355
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=42.46 E-value=28 Score=33.93 Aligned_cols=47 Identities=9% Similarity=-0.007 Sum_probs=39.9
Q ss_pred chhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc
Q 011963 410 DEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS 461 (474)
Q Consensus 410 ~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~ 461 (474)
...|+..|..+|..+... +.++|||++.....+-+-.+|...|++..
T Consensus 107 ~SGKf~~L~~LL~~l~~~-----~~kVLIfsq~t~~LDilE~~l~~~~~~y~ 153 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEY-----ETETAIVCRPGRTMDLLEALLLGNKVHIK 153 (328)
T ss_dssp TCHHHHHHHHHHHHHTTS-----CEEEEEEECSTHHHHHHHHHHTTSSCEEE
T ss_pred cCccHHHHHHHHHHHHhC-----CCEEEEEECChhHHHHHHHHHhcCCCceE
Confidence 356998888888877543 56999999999999999999999999765
No 356
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=42.44 E-value=15 Score=30.38 Aligned_cols=29 Identities=10% Similarity=0.104 Sum_probs=25.6
Q ss_pred CCcEEEEEccchhHHHHHHHHhhCCCc-cc
Q 011963 433 PLKVLYIVGKDSKFQNLVSTLKCKGYS-IS 461 (474)
Q Consensus 433 ~~k~LVF~~s~~~a~~l~~~L~~~gi~-v~ 461 (474)
..+++|||.+-..+..++..|...||. |.
T Consensus 86 ~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~ 115 (139)
T 2hhg_A 86 DKKFVFYCAGGLRSALAAKTAQDMGLKPVA 115 (139)
T ss_dssp SSEEEEECSSSHHHHHHHHHHHHHTCCSEE
T ss_pred CCeEEEECCCChHHHHHHHHHHHcCCCCeE
Confidence 578999999999999999999999995 53
No 357
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=42.28 E-value=1.1e+02 Score=28.00 Aligned_cols=83 Identities=12% Similarity=0.041 Sum_probs=48.5
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||...+||-|..+|-. +.. .|..++++.-+.+-..++...+... +.++..+..+..
T Consensus 19 l~~k~vlVTGas~gIG~aia~~------l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 80 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEE------LAG---------LGARVYTCSRNEKELDECLEIWREK---GLNVEGSVCDLL 80 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred CCCCEEEEECCcchHHHHHHHH------HHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEECCCC
Confidence 4678899988887677765543 222 2556666666655444444444332 445555666655
Q ss_pred HHHHHHHHhc-------CCCcEEEEChH
Q 011963 295 IDHQITGLRS-------CEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~~-------~~~~IlV~TP~ 315 (474)
.......+-. +++|+||...|
T Consensus 81 ~~~~~~~~~~~~~~~~~g~id~lv~nAg 108 (273)
T 1ae1_A 81 SRTERDKLMQTVAHVFDGKLNILVNNAG 108 (273)
T ss_dssp CHHHHHHHHHHHHHHTTSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCcEEEECCC
Confidence 4444333321 47999998776
No 358
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=42.24 E-value=1.3e+02 Score=27.23 Aligned_cols=83 Identities=13% Similarity=0.028 Sum_probs=48.4
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||...+||-|+.+|-. +.. .+-.++++.-..+-..++...+... +.++..+.++..
T Consensus 7 l~~k~vlVTGas~giG~~ia~~------l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 68 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEE------LAS---------LGASVYTCSRNQKELNDCLTQWRSK---GFKVEASVCDLS 68 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCEEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHH------HHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEcCCC
Confidence 4678889988887677755433 333 2556666666655444444444332 445666666665
Q ss_pred HHHHHHHHhc-------CCCcEEEEChH
Q 011963 295 IDHQITGLRS-------CEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~~-------~~~~IlV~TP~ 315 (474)
.......+-. +++|+||-..|
T Consensus 69 ~~~~~~~~~~~~~~~~~g~id~lv~~Ag 96 (260)
T 2ae2_A 69 SRSERQELMNTVANHFHGKLNILVNNAG 96 (260)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCCEEEECCC
Confidence 4444333321 47999998765
No 359
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=42.23 E-value=97 Score=28.13 Aligned_cols=87 Identities=13% Similarity=-0.018 Sum_probs=51.9
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||+..+||-|..+|-. +.. .|..++++.-+.+-+.++...+......+.++..+..+..
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~------l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 69 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAG------LAT---------DGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDIT 69 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHH------HHH---------HTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHH------HHH---------CCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCC
Confidence 4677788887777667654433 222 2557778888877777777777665222234444555555
Q ss_pred HHHHHHHHh------cCCCcEEEEChHH
Q 011963 295 IDHQITGLR------SCEPEFLVSTPER 316 (474)
Q Consensus 295 ~~~q~~~l~------~~~~~IlV~TP~r 316 (474)
.......+- -+++|+||-..|.
T Consensus 70 ~~~~v~~~~~~~~~~~g~iD~lvnnAg~ 97 (250)
T 3nyw_A 70 DCTKADTEIKDIHQKYGAVDILVNAAAM 97 (250)
T ss_dssp CHHHHHHHHHHHHHHHCCEEEEEECCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 433333221 1368999988763
No 360
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=42.05 E-value=2e+02 Score=26.02 Aligned_cols=173 Identities=8% Similarity=0.031 Sum_probs=88.8
Q ss_pred EEEEEecc--HHHHHHHHHHHHhc-ccCCcE-EEEEecCCCHHHH---HHHHhcCCCcEEEEChHHHHHHHHcCCCCCCC
Q 011963 258 FLLFLVSS--QEKAAKVRSVCKPL-KAFGIH-TVSLHPGAAIDHQ---ITGLRSCEPEFLVSTPERLLKLVSLKAIDVSG 330 (474)
Q Consensus 258 ~alil~Pt--reLa~Qi~~~~~~l-~~~~i~-v~~~~gg~~~~~q---~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~ 330 (474)
..-+++|. ...-.++...+... ...|+. +.....+.+...+ .+.+...++|-||..|..+ ..+.-.+
T Consensus 12 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~~~~~~~ 85 (277)
T 3hs3_A 12 MIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSAFTI------PPNFHLN 85 (277)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECCCC------CTTCCCS
T ss_pred EEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcchHH------HHHHhCC
Confidence 34455554 22334444444443 445888 6666555554443 3344444788888777111 2233345
Q ss_pred cceEEeccc--cc-----cCC-hhHHHHHHhhC-CCCCcEEEEEccCCcc-HHHHHHHh---hcCCceEEEccCCccccc
Q 011963 331 VSLLVVDRL--DS-----LSK-GDTLSLIRQSI-SGKPHTVVFNDCLTYT-SVPAVQNL---LLGSINRLSLNQSVASQS 397 (474)
Q Consensus 331 l~~lViDEa--d~-----ll~-~~~l~~Il~~l-~~~~q~llfSAT~~~~-v~~l~~~~---l~~p~~~v~v~~~~~~~~ 397 (474)
+-++++|.. +. ..| ........+++ ...+++.+++...... ...-..-| +...-
T Consensus 86 iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g------------- 152 (277)
T 3hs3_A 86 TPLVMYDSANINDDIVRIVSNNTKGGKESIKLLSKKIEKVLIQHWPLSLPTIRERIEAMTAEASKLK------------- 152 (277)
T ss_dssp SCEEEESCCCCCSSSEEEEECHHHHHHHHHHTSCTTCCEEEEEESCTTSHHHHHHHHHHHHHHHHTT-------------
T ss_pred CCEEEEcccccCCCCEEEEEChHHHHHHHHHHHHhCCCEEEEEeCCCcCccHHHHHHHHHHHHHHCC-------------
Confidence 778888765 11 122 33333334333 3445677776654332 11111222 11100
Q ss_pred CCcEEEEEEcCCchhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 398 ACIIQSVNVCASDEEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 398 ~~i~q~~~~~~~~~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
..+... +... ... +..+..++..+ ..+.-|||.+...|..+...|...|+.+
T Consensus 153 ~~~~~~-~~~~-~~~-----~~~~~~~l~~~----~~~~ai~~~~d~~A~g~~~al~~~g~~v 204 (277)
T 3hs3_A 153 IDYLLE-ETPE-NNP-----YISAQSALNKS----NQFDAIITVNDLYAAEIIKEAKRRNLKI 204 (277)
T ss_dssp CEEEEE-ECCS-SCH-----HHHHHHHHHTG----GGCSEEECSSHHHHHHHHHHHHHTTCCT
T ss_pred CCCCCC-CccC-Cch-----HHHHHHHHcCC----CCCCEEEECCHHHHHHHHHHHHHcCCCC
Confidence 001111 1111 111 35566666553 3577899999999999999999999874
No 361
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=41.90 E-value=82 Score=27.96 Aligned_cols=63 Identities=6% Similarity=0.042 Sum_probs=40.8
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC-HHHHHHHHhcCCCcEEEEChHHHHHHHHc
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA-IDHQITGLRSCEPEFLVSTPERLLKLVSL 323 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~-~~~q~~~l~~~~~~IlV~TP~rL~~ll~~ 323 (474)
....++++|..+|...+.+.+..+ +..+....++.. .-.....+ ..++||+|+--+- ..+++.
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~---~~~i~i~~~~l~~~v~~a~~~-~~~~dVIISRGgt-a~~lr~ 67 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEK---NFIPITKTASLTRASKIAFGL-QDEVDAIISRGAT-SDYIKK 67 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHH---TCEEEEEECCHHHHHHHHHHH-TTTCSEEEEEHHH-HHHHHT
T ss_pred CCcEEEEEccHHHHHHHHHHHhhh---CCceEEEECCHHHHHHHHHHh-cCCCeEEEECChH-HHHHHH
Confidence 458899999999999888777765 335545556543 22223344 4589999986554 455554
No 362
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=41.77 E-value=1.3e+02 Score=27.12 Aligned_cols=83 Identities=18% Similarity=0.057 Sum_probs=48.4
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||...+||-|+.++-. +.. .|..++++.-+.+-..++...+... +.++..+..+..
T Consensus 5 l~~k~~lVTGas~gIG~aia~~------l~~---------~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dv~ 66 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARA------LAA---------EGAAVAIAARRVEKLRALGDELTAA---GAKVHVLELDVA 66 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHH------HHH---------CCCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEECCCC
Confidence 5678899988887677765543 222 2556666666655555554444432 445555666655
Q ss_pred HHHHHHHHh------cCCCcEEEEChH
Q 011963 295 IDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
.......+- -+++|+||...|
T Consensus 67 ~~~~~~~~~~~~~~~~g~id~lv~nAg 93 (247)
T 2jah_A 67 DRQGVDAAVASTVEALGGLDILVNNAG 93 (247)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 443333221 136899998766
No 363
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=41.62 E-value=14 Score=30.75 Aligned_cols=27 Identities=15% Similarity=0.130 Sum_probs=25.1
Q ss_pred CCcEEEEEccchhHHHHHHHHhhCCCc
Q 011963 433 PLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (474)
Q Consensus 433 ~~k~LVF~~s~~~a~~l~~~L~~~gi~ 459 (474)
..+++|||.+-.++...+..|...||.
T Consensus 82 ~~~ivvyC~~G~rS~~aa~~L~~~G~~ 108 (137)
T 1qxn_A 82 EKPVVVFCKTAARAALAGKTLREYGFK 108 (137)
T ss_dssp TSCEEEECCSSSCHHHHHHHHHHHTCS
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcCCc
Confidence 679999999999999999999999994
No 364
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=41.30 E-value=2.4e+02 Score=31.66 Aligned_cols=78 Identities=8% Similarity=-0.001 Sum_probs=53.5
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhccc------------------------------------CCcEEEEEecCCCHHHHH
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKA------------------------------------FGIHTVSLHPGAAIDHQI 299 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~------------------------------------~~i~v~~~~gg~~~~~q~ 299 (474)
...+||.++|+.-+..+...+..+.. +...+..++||.+...+.
T Consensus 336 ~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~ 415 (997)
T 4a4z_A 336 LLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKE 415 (997)
T ss_dssp CCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHH
Confidence 45789999999998888777654311 022478899998865543
Q ss_pred ---HHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEecccc
Q 011963 300 ---TGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLD 340 (474)
Q Consensus 300 ---~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad 340 (474)
..+..+.++|||||- +-..++++.+ ..+|+....
T Consensus 416 ~v~~~F~~G~~kVLvAT~------~~a~GIDiP~-~~VVi~~~~ 452 (997)
T 4a4z_A 416 LIEILFSKGFIKVLFATE------TFAMGLNLPT-RTVIFSSIR 452 (997)
T ss_dssp HHHHHHHTTCCSEEEECT------HHHHSCCCCC-SEEEESCSE
T ss_pred HHHHHHHCCCCcEEEEch------HhhCCCCCCC-ceEEEeccc
Confidence 344566799999996 2235678888 667764443
No 365
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=41.02 E-value=29 Score=36.12 Aligned_cols=27 Identities=7% Similarity=0.048 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCcchhHHHHHHHHHHHHH
Q 011963 216 SAKDILETSGSSSTIVQIAWIVATAADSI 244 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~ 244 (474)
.+-++++..+|| ||||.+. -.++..+.
T Consensus 166 ~~pHlLIaG~TG-SGKSt~L-~~li~sLl 192 (512)
T 2ius_A 166 KMPHLLVAGTTG-SGASVGV-NAMILSML 192 (512)
T ss_dssp GSCSEEEECCTT-SSHHHHH-HHHHHHHH
T ss_pred cCceEEEECCCC-CCHHHHH-HHHHHHHH
Confidence 467999999999 9999544 33443333
No 366
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=41.02 E-value=29 Score=33.77 Aligned_cols=19 Identities=11% Similarity=0.018 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCcchhHHHH
Q 011963 216 SAKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf 235 (474)
.+..+++..|+| +|||...
T Consensus 50 ~~~~vll~GppG-tGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTG-SGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTT-SSHHHHH
T ss_pred CCCeEEEECCCC-CCHHHHH
Confidence 456899999999 9999743
No 367
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=40.68 E-value=90 Score=28.14 Aligned_cols=83 Identities=20% Similarity=0.189 Sum_probs=47.7
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEec-cHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS-SQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~P-treLa~Qi~~~~~~l~~~~i~v~~~~gg~ 293 (474)
+.++-+||+..+||-|..+|- .+.. .|..++++.- ..+.+.++...+... +.++..+.++.
T Consensus 2 l~~k~~lVTGas~gIG~~ia~------~l~~---------~G~~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv 63 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIAL------QLAE---------EGYNVAVNYAGSKEKAEAVVEEIKAK---GVDSFAIQANV 63 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHH------HHHH---------TTCEEEEEESSCHHHHHHHHHHHHHT---TSCEEEEECCT
T ss_pred CCCCEEEEECCCChHHHHHHH------HHHH---------CCCEEEEEeCCCHHHHHHHHHHHHhc---CCcEEEEEccC
Confidence 457778887766656665443 2333 2556655543 556656555555443 45566666666
Q ss_pred CHHHHHHHHhc------CCCcEEEEChH
Q 011963 294 AIDHQITGLRS------CEPEFLVSTPE 315 (474)
Q Consensus 294 ~~~~q~~~l~~------~~~~IlV~TP~ 315 (474)
........+-. +++|+||-..|
T Consensus 64 ~d~~~v~~~~~~~~~~~g~id~lv~nAg 91 (246)
T 3osu_A 64 ADADEVKAMIKEVVSQFGSLDVLVNNAG 91 (246)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 54444333221 36899998876
No 368
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=40.53 E-value=16 Score=32.82 Aligned_cols=33 Identities=9% Similarity=0.190 Sum_probs=0.0
Q ss_pred eEEeccccccCC--------hhHHHHHHhhCCCCCcEEEEE
Q 011963 333 LLVVDRLDSLSK--------GDTLSLIRQSISGKPHTVVFN 365 (474)
Q Consensus 333 ~lViDEad~ll~--------~~~l~~Il~~l~~~~q~llfS 365 (474)
+|||||||.++. ...+..+...-....++++++
T Consensus 90 vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~t 130 (199)
T 2r2a_A 90 IVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLT 130 (199)
T ss_dssp EEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEE
T ss_pred EEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEEC
No 369
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=40.52 E-value=27 Score=32.83 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=16.9
Q ss_pred ChHHHHHHHHcCCCCCCCcceEEeccccccC
Q 011963 313 TPERLLKLVSLKAIDVSGVSLLVVDRLDSLS 343 (474)
Q Consensus 313 TP~rL~~ll~~~~~~l~~l~~lViDEad~ll 343 (474)
+++.|...+.. .....+.++|||||...++
T Consensus 131 ~~~~l~~~~~a-~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 131 ETDRLLAKLAY-MRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp CHHHHHHHHHH-HHHTTCCSEEEEEEEC---
T ss_pred CHHHHHHHHHH-HHHhcCCCEEEEcCccccC
Confidence 45666544431 1123467899999999865
No 370
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=40.29 E-value=90 Score=34.44 Aligned_cols=76 Identities=14% Similarity=0.087 Sum_probs=49.5
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhcC-CCcEEEEChHHHHHHHHcCCCCCC-----
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRSC-EPEFLVSTPERLLKLVSLKAIDVS----- 329 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~~-~~~IlV~TP~rL~~ll~~~~~~l~----- 329 (474)
+..+||.+.|++-+..+...+... |+.+..++|+.......-....+ ...|+|||- +-.+++|+.
T Consensus 432 ~~pvLVft~s~~~se~Ls~~L~~~---gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIATd------mAgRG~DI~l~~~V 502 (844)
T 1tf5_A 432 GQPVLVGTVAVETSELISKLLKNK---GIPHQVLNAKNHEREAQIIEEAGQKGAVTIATN------MAGRGTDIKLGEGV 502 (844)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHTT---TCCCEEECSSCHHHHHHHHTTTTSTTCEEEEET------TSSTTCCCCCCTTS
T ss_pred CCcEEEEECCHHHHHHHHHHHHHC---CCCEEEeeCCccHHHHHHHHHcCCCCeEEEeCC------ccccCcCccccchh
Confidence 346899999999999888776654 88899999996533322112221 247999994 334566655
Q ss_pred ---CcceEEecccc
Q 011963 330 ---GVSLLVVDRLD 340 (474)
Q Consensus 330 ---~l~~lViDEad 340 (474)
++.++|-=|.|
T Consensus 503 ~~~ggl~VIn~d~p 516 (844)
T 1tf5_A 503 KELGGLAVVGTERH 516 (844)
T ss_dssp GGGTSEEEEESSCC
T ss_pred hhcCCcEEEEecCC
Confidence 44455555544
No 371
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=40.22 E-value=31 Score=33.83 Aligned_cols=44 Identities=14% Similarity=-0.006 Sum_probs=26.9
Q ss_pred HHHHHHhc------CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe
Q 011963 209 EFWKCYSS------AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV 263 (474)
Q Consensus 209 ~~i~~~l~------g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~ 263 (474)
..+..++. |+-+++.+|.| ||||. +++-++..+.. .+-.++|+.
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pG-sGKTt-Lal~la~~~~~---------~g~~vlyi~ 96 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPES-SGKTT-VALHAVANAQA---------AGGIAAFID 96 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTT-SSHHH-HHHHHHHHHHH---------TTCCEEEEE
T ss_pred HHHHHHhccCCccCCeEEEEECCCC-CCHHH-HHHHHHHHHHh---------CCCeEEEEE
Confidence 34455554 35678889999 99994 44444444433 234667765
No 372
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=39.87 E-value=2.2e+02 Score=26.03 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=30.4
Q ss_pred HHHHHH-----hhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 419 QVLDHA-----YGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 419 ~lL~~l-----l~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
..+..+ +..+ ..+.-|||.+...|..+...|...|+.+
T Consensus 181 ~~~~~l~~~~~l~~~----~~~~ai~~~nd~~A~g~~~al~~~G~~v 223 (303)
T 3kke_A 181 AALNTLYRGANLGKP----DGPTAVVVASVNAAVGALSTALRLGLRV 223 (303)
T ss_dssp HHHHHHHHHHCTTST----TSCSEEEESSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHhcchhhhcCC----CCCcEEEECCHHHHHHHHHHHHHcCCCC
Confidence 455666 5543 4678899999999999999999999874
No 373
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=39.71 E-value=1.3e+02 Score=27.42 Aligned_cols=83 Identities=13% Similarity=0.092 Sum_probs=47.2
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.++-+||+..+||-|..++-. +.. .+..++++.-..+-...+...+... +-++..+.++..
T Consensus 29 l~~k~vlITGasggIG~~la~~------L~~---------~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dl~ 90 (272)
T 1yb1_A 29 VTGEIVLITGAGHGIGRLTAYE------FAK---------LKSKLVLWDINKHGLEETAAKCKGL---GAKVHTFVVDCS 90 (272)
T ss_dssp CTTCEEEEETTTSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred cCCCEEEEECCCchHHHHHHHH------HHH---------CCCEEEEEEcCHHHHHHHHHHHHhc---CCeEEEEEeeCC
Confidence 4678899988887667655443 333 2556666666555444444444433 334555566655
Q ss_pred HHHHHHHHh------cCCCcEEEEChH
Q 011963 295 IDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
.......+- -+++|+||-..|
T Consensus 91 ~~~~v~~~~~~~~~~~g~iD~li~~Ag 117 (272)
T 1yb1_A 91 NREDIYSSAKKVKAEIGDVSILVNNAG 117 (272)
T ss_dssp CHHHHHHHHHHHHHHTCCCSEEEECCC
T ss_pred CHHHHHHHHHHHHHHCCCCcEEEECCC
Confidence 433332221 136899998765
No 374
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=39.70 E-value=1e+02 Score=28.19 Aligned_cols=84 Identities=17% Similarity=0.126 Sum_probs=48.3
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEec-cHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS-SQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~P-treLa~Qi~~~~~~l~~~~i~v~~~~gg~ 293 (474)
+.|+-+||+..+||-|..+|- .+.. .|..++++.- ..+....+...+... +.++..+..+.
T Consensus 27 l~~k~vlITGas~gIG~~la~------~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~ 88 (271)
T 4iin_A 27 FTGKNVLITGASKGIGAEIAK------TLAS---------MGLKVWINYRSNAEVADALKNELEEK---GYKAAVIKFDA 88 (271)
T ss_dssp CSCCEEEETTCSSHHHHHHHH------HHHH---------TTCEEEEEESSCHHHHHHHHHHHHHT---TCCEEEEECCT
T ss_pred cCCCEEEEECCCcHHHHHHHH------HHHH---------CCCEEEEEeCCCHHHHHHHHHHHHhc---CCceEEEECCC
Confidence 467888887777655654443 3333 3567666665 455555555555443 45565666665
Q ss_pred CHHHHHHHHh------cCCCcEEEEChHH
Q 011963 294 AIDHQITGLR------SCEPEFLVSTPER 316 (474)
Q Consensus 294 ~~~~q~~~l~------~~~~~IlV~TP~r 316 (474)
........+- .+++|+||-..|.
T Consensus 89 ~~~~~v~~~~~~~~~~~g~id~li~nAg~ 117 (271)
T 4iin_A 89 ASESDFIEAIQTIVQSDGGLSYLVNNAGV 117 (271)
T ss_dssp TCHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 5443333221 1368999987663
No 375
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=39.29 E-value=12 Score=32.57 Aligned_cols=17 Identities=6% Similarity=-0.083 Sum_probs=14.5
Q ss_pred cCCcEEEEcCCCcchhHH
Q 011963 216 SAKDILETSGSSSTIVQI 233 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTl 233 (474)
.|+=++++.|+| ||||.
T Consensus 4 ~g~~i~i~GpsG-sGKST 20 (180)
T 1kgd_A 4 MRKTLVLLGAHG-VGRRH 20 (180)
T ss_dssp CCCEEEEECCTT-SSHHH
T ss_pred CCCEEEEECCCC-CCHHH
Confidence 567788999999 99985
No 376
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=39.01 E-value=18 Score=37.57 Aligned_cols=27 Identities=4% Similarity=-0.157 Sum_probs=21.6
Q ss_pred hHHHHHHHhcCCcEEEEcCCCcchhHHH
Q 011963 207 GIEFWKCYSSAKDILETSGSSSTIVQIA 234 (474)
Q Consensus 207 Q~~~i~~~l~g~dvl~~A~TG~SGKTla 234 (474)
=..++-.+..|.++++..|+| +|||..
T Consensus 31 i~~l~~al~~~~~VLL~GpPG-tGKT~L 57 (500)
T 3nbx_X 31 IRLCLLAALSGESVFLLGPPG-IAKSLI 57 (500)
T ss_dssp HHHHHHHHHHTCEEEEECCSS-SSHHHH
T ss_pred HHHHHHHHhcCCeeEeecCch-HHHHHH
Confidence 344556667889999999999 999963
No 377
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=39.01 E-value=77 Score=24.76 Aligned_cols=50 Identities=12% Similarity=0.180 Sum_probs=36.6
Q ss_pred HHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc----chHHHHHHHhh
Q 011963 420 VLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS----TGSNCIVSHIK 472 (474)
Q Consensus 420 lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~----~~r~~~i~~Fk 472 (474)
-+..+-.... ..++||..|...-..++.+++...||.|. .+.++.+..|+
T Consensus 41 emkklaeekn---fekiliisndkqllkemlelisklgykvflllqdqdeneleefk 94 (134)
T 2lci_A 41 EMKKLAEEKN---FEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELEEFK 94 (134)
T ss_dssp HHHHHHHCCS---CCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHHHHH
T ss_pred HHHHHHhhcC---cceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHHHHH
Confidence 3444444444 67888988888888888888888898886 45556777775
No 378
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=39.00 E-value=1.1e+02 Score=27.90 Aligned_cols=83 Identities=14% Similarity=0.114 Sum_probs=49.5
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEE-eccHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL-VSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil-~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~ 293 (474)
+.|+-+||+..+||-|..+|- .+.. .|..++++ ..+.+.+.++...+... +.++..+..+.
T Consensus 2 ~~~k~vlVTGas~gIG~aia~------~l~~---------~G~~vv~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv 63 (258)
T 3oid_A 2 EQNKCALVTGSSRGVGKAAAI------RLAE---------NGYNIVINYARSKKAALETAEEIEKL---GVKVLVVKANV 63 (258)
T ss_dssp -CCCEEEESSCSSHHHHHHHH------HHHH---------TTCEEEEEESSCHHHHHHHHHHHHTT---TCCEEEEECCT
T ss_pred CCCCEEEEecCCchHHHHHHH------HHHH---------CCCEEEEEcCCCHHHHHHHHHHHHhc---CCcEEEEEcCC
Confidence 467778887777656665443 3333 35566665 67776666666655543 45566666776
Q ss_pred CHHHHHHHHh------cCCCcEEEEChH
Q 011963 294 AIDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 294 ~~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
........+- -+++|+||-..|
T Consensus 64 ~~~~~v~~~~~~~~~~~g~id~lv~nAg 91 (258)
T 3oid_A 64 GQPAKIKEMFQQIDETFGRLDVFVNNAA 91 (258)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 6444433321 136899998765
No 379
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=38.68 E-value=37 Score=29.66 Aligned_cols=13 Identities=0% Similarity=-0.363 Sum_probs=10.6
Q ss_pred EEEEcCCCcchhHH
Q 011963 220 ILETSGSSSTIVQI 233 (474)
Q Consensus 220 vl~~A~TG~SGKTl 233 (474)
+.++++.| ||||.
T Consensus 7 i~i~G~sG-sGKTT 19 (169)
T 1xjc_A 7 WQVVGYKH-SGKTT 19 (169)
T ss_dssp EEEECCTT-SSHHH
T ss_pred EEEECCCC-CCHHH
Confidence 56778999 99985
No 380
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=38.44 E-value=1e+02 Score=27.55 Aligned_cols=83 Identities=19% Similarity=0.132 Sum_probs=50.1
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||+..+||-|..+|- .+.. .+..++++....+-..++...+... +.++..+..+..
T Consensus 3 l~~k~vlITGas~gIG~~~a~------~l~~---------~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 64 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAH------ALAS---------KGATVVGTATSQASAEKFENSMKEK---GFKARGLVLNIS 64 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHH------HHHH---------TTCEEEEEESSHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred CCCCEEEEECCCChHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEEecCC
Confidence 457778887777656665443 2333 3667778887777666666655544 445555666655
Q ss_pred HHHHHHHHh------cCCCcEEEEChH
Q 011963 295 IDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
.......+- .+++|+||-..|
T Consensus 65 ~~~~~~~~~~~~~~~~~~id~li~~Ag 91 (247)
T 3lyl_A 65 DIESIQNFFAEIKAENLAIDILVNNAG 91 (247)
T ss_dssp CHHHHHHHHHHHHHTTCCCSEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 443333221 135899998775
No 381
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=38.42 E-value=12 Score=33.34 Aligned_cols=20 Identities=5% Similarity=-0.112 Sum_probs=16.5
Q ss_pred HHhcCCcEEEEcCCCcchhHH
Q 011963 213 CYSSAKDILETSGSSSTIVQI 233 (474)
Q Consensus 213 ~~l~g~dvl~~A~TG~SGKTl 233 (474)
++..|+-++++.|+| ||||.
T Consensus 8 ~~~~~~~i~l~G~sG-sGKsT 27 (204)
T 2qor_A 8 HMARIPPLVVCGPSG-VGKGT 27 (204)
T ss_dssp -CCCCCCEEEECCTT-SCHHH
T ss_pred ccccCCEEEEECCCC-CCHHH
Confidence 456778899999999 99985
No 382
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=38.36 E-value=1.5e+02 Score=26.62 Aligned_cols=83 Identities=11% Similarity=0.043 Sum_probs=47.3
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.++-++|...+||-|..++-. +.. .+..++++.-..+-...+...+... +.++..+.++..
T Consensus 11 l~~k~vlItGasggiG~~la~~------l~~---------~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~D~~ 72 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTA------LAE---------AGARVIIADLDEAMATKAVEDLRME---GHDVSSVVMDVT 72 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred CCCCEEEEeCCCchHHHHHHHH------HHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEEecCC
Confidence 4678889988887666655443 333 2556677766655544444444332 334555666655
Q ss_pred HHHHHHHHhc------CCCcEEEEChH
Q 011963 295 IDHQITGLRS------CEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~~------~~~~IlV~TP~ 315 (474)
.......+-. +++|+||-..|
T Consensus 73 ~~~~~~~~~~~~~~~~~~id~vi~~Ag 99 (260)
T 3awd_A 73 NTESVQNAVRSVHEQEGRVDILVACAG 99 (260)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4433332211 36899997765
No 383
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=38.29 E-value=21 Score=35.28 Aligned_cols=19 Identities=11% Similarity=-0.039 Sum_probs=14.8
Q ss_pred hcCCcEEEEcCCCcchhHHH
Q 011963 215 SSAKDILETSGSSSTIVQIA 234 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTla 234 (474)
..|.-++++.||| ||||..
T Consensus 121 ~~~g~i~I~GptG-SGKTTl 139 (356)
T 3jvv_A 121 VPRGLVLVTGPTG-SGKSTT 139 (356)
T ss_dssp CSSEEEEEECSTT-SCHHHH
T ss_pred CCCCEEEEECCCC-CCHHHH
Confidence 3445788999999 999853
No 384
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=38.27 E-value=32 Score=36.25 Aligned_cols=27 Identities=7% Similarity=-0.013 Sum_probs=19.4
Q ss_pred CCcEEEEcCCCcchhHHHHHHHHHHHHHH
Q 011963 217 AKDILETSGSSSTIVQIAWIVATAADSIA 245 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~ 245 (474)
+-++++...|| ||||.+. -.++..|..
T Consensus 214 ~pHlLIaG~TG-SGKS~~L-~tlI~sLl~ 240 (574)
T 2iut_A 214 MPHLLVAGTTG-SGKSVGV-NAMLLSILF 240 (574)
T ss_dssp SCCEEEECCTT-SSHHHHH-HHHHHHHHT
T ss_pred CCeeEEECCCC-CCHHHHH-HHHHHHHHH
Confidence 46899999999 9999554 444444443
No 385
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=38.20 E-value=76 Score=28.89 Aligned_cols=83 Identities=14% Similarity=0.030 Sum_probs=50.6
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||+..+||-|+.+|-. +.. .|..++++.-+.+-..++...+... +-++..+..+..
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~------l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~ 66 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKK------FAA---------EGFTVFAGRRNGEKLAPLVAEIEAA---GGRIVARSLDAR 66 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHH------HHH---------TTCEEEEEESSGGGGHHHHHHHHHT---TCEEEEEECCTT
T ss_pred CCCCEEEEECCCchHHHHHHHH------HHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEECcCC
Confidence 4678888888777667655443 333 3567777776665555555555444 456666777765
Q ss_pred HHHHHHHHhc-----CCCcEEEEChH
Q 011963 295 IDHQITGLRS-----CEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~~-----~~~~IlV~TP~ 315 (474)
.......+-. +++|+||-..|
T Consensus 67 ~~~~v~~~~~~~~~~g~id~lv~nAg 92 (252)
T 3h7a_A 67 NEDEVTAFLNAADAHAPLEVTIFNVG 92 (252)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred CHHHHHHHHHHHHhhCCceEEEECCC
Confidence 4444333321 47899998766
No 386
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=38.14 E-value=1.3e+02 Score=26.79 Aligned_cols=87 Identities=16% Similarity=0.080 Sum_probs=48.7
Q ss_pred HhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 011963 214 YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293 (474)
Q Consensus 214 ~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~ 293 (474)
.+.|+-+||+..+||-|..+|- .+.. .+..++++.-+.+-..++.+.+.........+..+--+.
T Consensus 11 ~l~~k~vlITGas~gIG~~ia~------~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~ 75 (247)
T 3i1j_A 11 LLKGRVILVTGAARGIGAAAAR------AYAA---------HGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLEN 75 (247)
T ss_dssp TTTTCEEEESSTTSHHHHHHHH------HHHH---------TTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTT
T ss_pred cCCCCEEEEeCCCChHHHHHHH------HHHH---------CCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEecccc
Confidence 4678888888777756665443 2333 366777787777777777776666532233333322211
Q ss_pred CHHHHHH----HHh--cCCCcEEEEChH
Q 011963 294 AIDHQIT----GLR--SCEPEFLVSTPE 315 (474)
Q Consensus 294 ~~~~q~~----~l~--~~~~~IlV~TP~ 315 (474)
....... .+. -+++|+||-..|
T Consensus 76 ~~~~~~~~~~~~~~~~~g~id~lv~nAg 103 (247)
T 3i1j_A 76 ATAQQYRELAARVEHEFGRLDGLLHNAS 103 (247)
T ss_dssp CCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECCc
Confidence 2222221 111 136899998765
No 387
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=38.01 E-value=14 Score=30.60 Aligned_cols=27 Identities=7% Similarity=0.121 Sum_probs=24.8
Q ss_pred CCcEEEEEccchhHHHHHHHHhhCCCc
Q 011963 433 PLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (474)
Q Consensus 433 ~~k~LVF~~s~~~a~~l~~~L~~~gi~ 459 (474)
..+++|||.+-.++...+..|...||.
T Consensus 74 ~~~ivv~C~sG~RS~~aa~~L~~~G~~ 100 (134)
T 1vee_A 74 NTTLYILDKFDGNSELVAELVALNGFK 100 (134)
T ss_dssp GCEEEEECSSSTTHHHHHHHHHHHTCS
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHcCCc
Confidence 569999999999999999999999995
No 388
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=37.76 E-value=60 Score=29.81 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=47.6
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEec---cHHHHHHHHHHHHhcccCCcEEEEEec
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS---SQEKAAKVRSVCKPLKAFGIHTVSLHP 291 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~P---treLa~Qi~~~~~~l~~~~i~v~~~~g 291 (474)
+.|+-+||...+||-|+.+|-. +.. .|..++++.- ..+-+.++...+.. .+.++..+..
T Consensus 9 l~~k~vlVTGas~GIG~aia~~------la~---------~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 70 (262)
T 3ksu_A 9 LKNKVIVIAGGIKNLGALTAKT------FAL---------ESVNLVLHYHQAKDSDTANKLKDELED---QGAKVALYQS 70 (262)
T ss_dssp CTTCEEEEETCSSHHHHHHHHH------HTT---------SSCEEEEEESCGGGHHHHHHHHHHHHT---TTCEEEEEEC
T ss_pred CCCCEEEEECCCchHHHHHHHH------HHH---------CCCEEEEEecCccCHHHHHHHHHHHHh---cCCcEEEEEC
Confidence 4678888888777567655432 222 3556666532 23344444444433 3567777777
Q ss_pred CCCHHHHHHHHhc------CCCcEEEEChH
Q 011963 292 GAAIDHQITGLRS------CEPEFLVSTPE 315 (474)
Q Consensus 292 g~~~~~q~~~l~~------~~~~IlV~TP~ 315 (474)
+.....+...+-. +++|+||...|
T Consensus 71 Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg 100 (262)
T 3ksu_A 71 DLSNEEEVAKLFDFAEKEFGKVDIAINTVG 100 (262)
T ss_dssp CCCSHHHHHHHHHHHHHHHCSEEEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 7665444443321 36899998766
No 389
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=37.61 E-value=53 Score=24.97 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=25.4
Q ss_pred CCCcEEEEEc--cchhHHHHHHHHhhCCCccc
Q 011963 432 EPLKVLYIVG--KDSKFQNLVSTLKCKGYSIS 461 (474)
Q Consensus 432 ~~~k~LVF~~--s~~~a~~l~~~L~~~gi~v~ 461 (474)
+++|.+||+| |..++.+....-++.|+...
T Consensus 50 ngkplvvfvngasqndvnefqneakkegvsyd 81 (112)
T 2lnd_A 50 NGKPLVVFVNGASQNDVNEFQNEAKKEGVSYD 81 (112)
T ss_dssp CCSCEEEEECSCCHHHHHHHHHHHHHHTCEEE
T ss_pred cCCeEEEEecCcccccHHHHHHHHHhcCcchh
Confidence 3789999997 67888999999999998765
No 390
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=37.55 E-value=19 Score=35.40 Aligned_cols=20 Identities=5% Similarity=-0.031 Sum_probs=17.2
Q ss_pred HHhcCCcEEEEcCCCcchhHH
Q 011963 213 CYSSAKDILETSGSSSTIVQI 233 (474)
Q Consensus 213 ~~l~g~dvl~~A~TG~SGKTl 233 (474)
.+..|..++++.||| ||||.
T Consensus 171 ~i~~G~~i~ivG~sG-sGKST 190 (361)
T 2gza_A 171 AVQLERVIVVAGETG-SGKTT 190 (361)
T ss_dssp HHHTTCCEEEEESSS-SCHHH
T ss_pred HHhcCCEEEEECCCC-CCHHH
Confidence 356788999999999 99985
No 391
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=37.55 E-value=14 Score=32.97 Aligned_cols=15 Identities=20% Similarity=0.089 Sum_probs=13.0
Q ss_pred CcEEEEcCCCcchhHH
Q 011963 218 KDILETSGSSSTIVQI 233 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTl 233 (474)
|-+++++|+| +|||-
T Consensus 2 RpIVi~GPSG-~GK~T 16 (186)
T 1ex7_A 2 RPIVISGPSG-TGKST 16 (186)
T ss_dssp CCEEEECCTT-SSHHH
T ss_pred CEEEEECCCC-CCHHH
Confidence 4589999999 99985
No 392
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=37.49 E-value=2.9e+02 Score=26.72 Aligned_cols=173 Identities=13% Similarity=0.060 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhc-ccCC--cEEEEEecCCC---HHHHHHHHhcCCCcEEEEChHHHHHHHHcCCCCCCCcceEEeccccc
Q 011963 268 KAAKVRSVCKPL-KAFG--IHTVSLHPGAA---IDHQITGLRSCEPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDS 341 (474)
Q Consensus 268 La~Qi~~~~~~l-~~~~--i~v~~~~gg~~---~~~q~~~l~~~~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~ 341 (474)
--..+.+-++.+ ..+| +.+..+-.... ....++.+...++|+||+|...+.+.+..-.-...++.|+++|-.-.
T Consensus 42 f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~~~~~~~~vA~~~Pdv~fv~id~~~~ 121 (356)
T 3s99_A 42 WTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFTTSFGYMDPTVKVAKKFPDVKFEHATGYKT 121 (356)
T ss_dssp HHHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSGGGHHHHHHHHTTCTTSEEEEESCCCC
T ss_pred HHHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEecccc
Confidence 334445555554 3345 66654443222 22334445445899999997766665544323445688999886422
Q ss_pred cCC-------hhHHHHHH----hhCCCCCcEEEEEccCCccHHHHHHHhhcCCceEEEccCCcccccCCcEEEEEEcCCc
Q 011963 342 LSK-------GDTLSLIR----QSISGKPHTVVFNDCLTYTSVPAVQNLLLGSINRLSLNQSVASQSACIIQSVNVCASD 410 (474)
Q Consensus 342 ll~-------~~~l~~Il----~~l~~~~q~llfSAT~~~~v~~l~~~~l~~p~~~v~v~~~~~~~~~~i~q~~~~~~~~ 410 (474)
.-. ..+-..+. ..+.....+-++.+...+.+.....-|...- ....+.+.-.+.++.+.
T Consensus 122 ~~Nv~sv~~~~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p~v~~~~~GF~~G~----------k~~np~i~v~~~~~g~~ 191 (356)
T 3s99_A 122 ADNMSAYNARFYEGRYVQGVIAAKMSKKGIAGYIGSVPVPEVVQGINSFMLGA----------QSVNPDFRVKVIWVNSW 191 (356)
T ss_dssp BTTEEEEEECHHHHHHHHHHHHHHHCSSCEEEEEECCCCHHHHHHHHHHHHHH----------HTTCTTCEEEEEECSSS
T ss_pred CCcEEEEEechhHHHHHHHHHHHHhcCCCEEEEECCCccHHHHHHHHHHHHHH----------HHHCCCCEEEEEECCCC
Confidence 111 11111222 2344444555555543343444444443211 11122344444444432
Q ss_pred --hhHHHHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc
Q 011963 411 --EEKILKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS 461 (474)
Q Consensus 411 --~~K~~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~ 461 (474)
..+-. .+...++..+ ..+||+..... -+.+.+++.|+.+.
T Consensus 192 ~d~~kg~---~~a~~l~~~G------~DvIf~~~d~~--Gv~~aa~e~Gv~vI 233 (356)
T 3s99_A 192 FDPGKEA---DAAKALIDQG------VDIITQHTDST--AAIQVAHDRGIKAF 233 (356)
T ss_dssp CCHHHHH---HHHHHHHHTT------CSEEEESSSSS--HHHHHHHHTTCEEE
T ss_pred CChHHHH---HHHHHHHhCC------CcEEEECCCch--HHHHHHHHcCCEEE
Confidence 22322 3444555442 35888865543 56677777787653
No 393
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=37.19 E-value=2.4e+02 Score=25.56 Aligned_cols=40 Identities=13% Similarity=-0.051 Sum_probs=31.8
Q ss_pred HHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 417 GIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 417 l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
....+..++..+ +.+.-|||.+...|..+...|...|+.+
T Consensus 175 ~~~~~~~~l~~~----~~~~ai~~~~d~~A~g~~~al~~~g~~v 214 (288)
T 3gv0_A 175 IRDFGQRLMQSS----DRPDGIVSISGSSTIALVAGFEAAGVKI 214 (288)
T ss_dssp HHHHHHHHTTSS----SCCSEEEESCHHHHHHHHHHHHTTTCCT
T ss_pred HHHHHHHHHhCC----CCCcEEEEcCcHHHHHHHHHHHHcCCCC
Confidence 336677777654 3577899999999999999999999874
No 394
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=37.15 E-value=11 Score=32.57 Aligned_cols=20 Identities=15% Similarity=0.032 Sum_probs=16.4
Q ss_pred HhcCCcEEEEcCCCcchhHHH
Q 011963 214 YSSAKDILETSGSSSTIVQIA 234 (474)
Q Consensus 214 ~l~g~dvl~~A~TG~SGKTla 234 (474)
+..++.++++.+.| ||||..
T Consensus 8 ~~~~~~i~i~G~~G-sGKst~ 27 (180)
T 3iij_A 8 FMLLPNILLTGTPG-VGKTTL 27 (180)
T ss_dssp TCCCCCEEEECSTT-SSHHHH
T ss_pred cccCCeEEEEeCCC-CCHHHH
Confidence 34567899999999 999864
No 395
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=37.15 E-value=1.3e+02 Score=27.62 Aligned_cols=83 Identities=17% Similarity=0.104 Sum_probs=48.5
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEec-cHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS-SQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~P-treLa~Qi~~~~~~l~~~~i~v~~~~gg~ 293 (474)
+.|+-+||+..+||-|..+|-. +.. .|..++++.- ..+...++...+... +-++..+..+.
T Consensus 26 l~~k~vlVTGas~gIG~aia~~------la~---------~G~~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D~ 87 (269)
T 4dmm_A 26 LTDRIALVTGASRGIGRAIALE------LAA---------AGAKVAVNYASSAGAADEVVAAIAAA---GGEAFAVKADV 87 (269)
T ss_dssp TTTCEEEETTCSSHHHHHHHHH------HHH---------TTCEEEEEESSCHHHHHHHHHHHHHT---TCCEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHH------HHH---------CCCEEEEEeCCChHHHHHHHHHHHhc---CCcEEEEECCC
Confidence 5688888877766566654432 333 2556666554 555555555555443 44566666666
Q ss_pred CHHHHHHHHh------cCCCcEEEEChH
Q 011963 294 AIDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 294 ~~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
........+- -+++|+||-..|
T Consensus 88 ~d~~~v~~~~~~~~~~~g~id~lv~nAg 115 (269)
T 4dmm_A 88 SQESEVEALFAAVIERWGRLDVLVNNAG 115 (269)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 5444433321 136899998765
No 396
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=37.11 E-value=18 Score=35.58 Aligned_cols=14 Identities=7% Similarity=-0.161 Sum_probs=11.8
Q ss_pred cEEEEcCCCcchhHH
Q 011963 219 DILETSGSSSTIVQI 233 (474)
Q Consensus 219 dvl~~A~TG~SGKTl 233 (474)
-++++.||| ||||.
T Consensus 9 lI~I~Gptg-SGKTt 22 (340)
T 3d3q_A 9 LIVIVGPTA-SGKTE 22 (340)
T ss_dssp EEEEECSTT-SSHHH
T ss_pred eEEEECCCc-CcHHH
Confidence 467889999 99994
No 397
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=37.06 E-value=22 Score=35.14 Aligned_cols=19 Identities=0% Similarity=-0.169 Sum_probs=15.3
Q ss_pred cCCc--EEEEcCCCcchhHHHH
Q 011963 216 SAKD--ILETSGSSSTIVQIAW 235 (474)
Q Consensus 216 ~g~d--vl~~A~TG~SGKTlaf 235 (474)
.|.+ +++-.+|| ||||.+.
T Consensus 82 ~G~n~tifAYGqTG-SGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTG-SGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTT-SSHHHHH
T ss_pred CCceeEEEeeCCCC-CCCCEEE
Confidence 4776 57778999 9999875
No 398
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=37.02 E-value=2e+02 Score=26.20 Aligned_cols=85 Identities=9% Similarity=0.075 Sum_probs=48.2
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||...+||-|..++-. +.. .+..++++.-+.+-...+...+.... .+-++..+.++..
T Consensus 30 l~~k~vlVTGasggIG~~la~~------l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~ 93 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARA------LVQ---------QGLKVVGCARTVGNIEELAAECKSAG-YPGTLIPYRCDLS 93 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHHTT-CSSEEEEEECCTT
T ss_pred cCCCEEEEECCCchHHHHHHHH------HHH---------CCCEEEEEECChHHHHHHHHHHHhcC-CCceEEEEEecCC
Confidence 5788899998887667755443 222 25566666666555444444444331 1234555566655
Q ss_pred HHHHHHHHh------cCCCcEEEEChH
Q 011963 295 IDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
....+..+- -+++|+||...|
T Consensus 94 ~~~~v~~~~~~~~~~~g~iD~vi~~Ag 120 (279)
T 1xg5_A 94 NEEDILSMFSAIRSQHSGVDICINNAG 120 (279)
T ss_dssp CHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 433332221 136899998765
No 399
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=36.81 E-value=1.6e+02 Score=27.02 Aligned_cols=83 Identities=14% Similarity=0.058 Sum_probs=47.5
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||+..+||-|..++-. +.. .+..++++.-+.+-..++...+... +.++..+.++..
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~------l~~---------~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dv~ 81 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARR------LGK---------EGLRVFVCARGEEGLRTTLKELREA---GVEADGRTCDVR 81 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHH------HHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEECCCC
Confidence 5678889988887677765443 222 2556666666555444444444333 334555556655
Q ss_pred HHHHHHHHh------cCCCcEEEEChH
Q 011963 295 IDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
.......+- -+++|+||-..|
T Consensus 82 ~~~~v~~~~~~~~~~~g~iD~lv~~Ag 108 (277)
T 2rhc_B 82 SVPEIEALVAAVVERYGPVDVLVNNAG 108 (277)
T ss_dssp CHHHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 433333221 136899998765
No 400
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*
Probab=36.55 E-value=1.7e+02 Score=25.77 Aligned_cols=82 Identities=15% Similarity=0.084 Sum_probs=49.7
Q ss_pred CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHH
Q 011963 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAID 296 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~ 296 (474)
++-+||+..+||-|+.+|-. +.. .|..++++.-+.+-..++...+... .+.++..+..+....
T Consensus 2 ~k~vlITGas~gIG~~ia~~------l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~ 64 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARA------LAR---------DGYALALGARSVDRLEKIAHELMQE--QGVEVFYHHLDVSKA 64 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHHH--HCCCEEEEECCTTCH
T ss_pred CCEEEEECCCcHHHHHHHHH------HHH---------CCCEEEEEeCCHHHHHHHHHHHHhh--cCCeEEEEEeccCCH
Confidence 56678887776566654433 333 3567777777777666665555422 245566666676655
Q ss_pred HHHHHHhc------CCCcEEEEChH
Q 011963 297 HQITGLRS------CEPEFLVSTPE 315 (474)
Q Consensus 297 ~q~~~l~~------~~~~IlV~TP~ 315 (474)
.....+.. +++|+||-..|
T Consensus 65 ~~v~~~~~~~~~~~g~id~li~~Ag 89 (235)
T 3l77_A 65 ESVEEFSKKVLERFGDVDVVVANAG 89 (235)
T ss_dssp HHHHHHCC-HHHHHSSCSEEEECCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCc
Confidence 44443322 36899998876
No 401
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=36.50 E-value=1e+02 Score=28.06 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=49.6
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||+..+||-|..+|- .+.. .|-.++++.-+.+-..+....+.. .+-++..+..+..
T Consensus 4 l~~k~vlVTGas~gIG~aia~------~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~ 65 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMAT------RFAK---------EGARVVITGRTKEKLEEAKLEIEQ---FPGQILTVQMDVR 65 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHHH------HHHH---------TTCEEEEEESCHHHHHHHHHHHCC---STTCEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEccCC
Confidence 567888887776656665443 2333 356777777777666655555433 3445666666665
Q ss_pred HHHHHHHHh------cCCCcEEEEChH
Q 011963 295 IDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
.......+- -+++|+||-..|
T Consensus 66 ~~~~v~~~~~~~~~~~g~id~lv~nAg 92 (257)
T 3imf_A 66 NTDDIQKMIEQIDEKFGRIDILINNAA 92 (257)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 444433321 136899998776
No 402
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=36.44 E-value=21 Score=35.99 Aligned_cols=14 Identities=7% Similarity=-0.097 Sum_probs=11.6
Q ss_pred EEEEcCCCcchhHHH
Q 011963 220 ILETSGSSSTIVQIA 234 (474)
Q Consensus 220 vl~~A~TG~SGKTla 234 (474)
+++++||| ||||..
T Consensus 5 i~i~Gptg-sGKttl 18 (409)
T 3eph_A 5 IVIAGTTG-VGKSQL 18 (409)
T ss_dssp EEEEECSS-SSHHHH
T ss_pred EEEECcch-hhHHHH
Confidence 57889999 999943
No 403
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=36.33 E-value=1.1e+02 Score=28.27 Aligned_cols=83 Identities=13% Similarity=0.064 Sum_probs=49.3
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||+..+||-|..+|-. +.. .|..++++.-..+-+.++...+... +.++..+..+..
T Consensus 26 l~~k~~lVTGas~GIG~aia~~------la~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~ 87 (270)
T 3ftp_A 26 LDKQVAIVTGASRGIGRAIALE------LAR---------RGAMVIGTATTEAGAEGIGAAFKQA---GLEGRGAVLNVN 87 (270)
T ss_dssp TTTCEEEETTCSSHHHHHHHHH------HHH---------TTCEEEEEESSHHHHHHHHHHHHHH---TCCCEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHH------HHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEEeCC
Confidence 5678888877666566654432 333 3667778887777766666666554 333444455554
Q ss_pred HHHHHHHHh------cCCCcEEEEChH
Q 011963 295 IDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
.......+- -+++|+||-..|
T Consensus 88 d~~~v~~~~~~~~~~~g~iD~lvnnAg 114 (270)
T 3ftp_A 88 DATAVDALVESTLKEFGALNVLVNNAG 114 (270)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 333333221 136899998776
No 404
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Probab=36.16 E-value=1.2e+02 Score=27.92 Aligned_cols=84 Identities=14% Similarity=0.098 Sum_probs=47.2
Q ss_pred HhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEE-eccHHHHHHHHHHHHhcccCCcEEEEEecC
Q 011963 214 YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL-VSSQEKAAKVRSVCKPLKAFGIHTVSLHPG 292 (474)
Q Consensus 214 ~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil-~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg 292 (474)
++.|+-+||+..+||-|+.+|-.| .. .|..++++ ....+.+.++...+... +-++..+..+
T Consensus 24 ~~~~k~~lVTGas~GIG~aia~~l------a~---------~G~~Vv~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D 85 (267)
T 3u5t_A 24 METNKVAIVTGASRGIGAAIAARL------AS---------DGFTVVINYAGKAAAAEEVAGKIEAA---GGKALTAQAD 85 (267)
T ss_dssp ---CCEEEEESCSSHHHHHHHHHH------HH---------HTCEEEEEESSCSHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHH------HH---------CCCEEEEEcCCCHHHHHHHHHHHHhc---CCeEEEEEcC
Confidence 356888999887776777555432 22 15555555 44455555555555444 4455556666
Q ss_pred CCHHHHHHHHhc------CCCcEEEEChH
Q 011963 293 AAIDHQITGLRS------CEPEFLVSTPE 315 (474)
Q Consensus 293 ~~~~~q~~~l~~------~~~~IlV~TP~ 315 (474)
.........+-. +++|+||-..|
T Consensus 86 l~~~~~v~~~~~~~~~~~g~iD~lvnnAG 114 (267)
T 3u5t_A 86 VSDPAAVRRLFATAEEAFGGVDVLVNNAG 114 (267)
T ss_dssp TTCHHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 554444333321 36899998776
No 405
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=35.22 E-value=31 Score=30.54 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=25.4
Q ss_pred CCCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEEEccCCc
Q 011963 328 VSGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVFNDCLTY 370 (474)
Q Consensus 328 l~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llfSAT~~~ 370 (474)
+.+.++|||||++.|-. ...+..|...+.....+++-++|++.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh 147 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPK 147 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCC
Confidence 46678999999988843 33333333333333335555777754
No 406
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=35.20 E-value=2.9e+02 Score=26.05 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=30.2
Q ss_pred HHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 419 ~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
..+..++..+ ..+.-|||.+...|-.+...|...|+.+
T Consensus 257 ~~~~~ll~~~----~~~~ai~~~nD~~A~g~~~al~~~G~~v 294 (366)
T 3h5t_A 257 EVAKELLETH----PDLTAVLCTVDALAFGVLEYLKSVGKSA 294 (366)
T ss_dssp HHHHHHHHHC----TTCCEEEESSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCC----CCCcEEEECCcHHHHHHHHHHHHcCCCC
Confidence 4555555543 4678999999999999999999999875
No 407
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=34.69 E-value=2.6e+02 Score=25.38 Aligned_cols=41 Identities=12% Similarity=-0.022 Sum_probs=29.8
Q ss_pred HHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 419 ~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
..+..++..+. ....+.-|||.+...|..+...|...|+.+
T Consensus 178 ~~~~~~l~~~~-~~~~~~ai~~~~d~~A~g~~~al~~~g~~v 218 (295)
T 3hcw_A 178 NYMQNLHTRLK-DPNIKQAIISLDAMLHLAILSVLYELNIEI 218 (295)
T ss_dssp HHHHHHHHHHT-CTTSCEEEEESSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhhcc-cCCCCcEEEECChHHHHHHHHHHHHcCCCC
Confidence 44455544431 013578999999999999999999999875
No 408
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=34.34 E-value=30 Score=35.66 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=25.1
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEE
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVF 364 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llf 364 (474)
..++++|||||++|-+ ...+..+++.+. .|.|+.
T Consensus 413 ~~~rlvvlDEA~kmD~~~~~~~~~l~~~lg--lQliia 448 (483)
T 3euj_A 413 LPCRLLFLDQAARLDAMSINTLFELCERLD--MQLLIA 448 (483)
T ss_dssp CCCCEEEESSGGGSCHHHHHHHHHHHHHTT--CEEEEE
T ss_pred CceeEEEEeccccCCHHHHHHHHHHHHHcC--CEEEEE
Confidence 5899999999977765 555666666654 888853
No 409
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=34.23 E-value=23 Score=33.85 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCcchhHHH
Q 011963 216 SAKDILETSGSSSTIVQIA 234 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (474)
.+..+++..|+| +|||+.
T Consensus 24 ~~~~vLi~Ge~G-tGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSG-TGKELV 41 (304)
T ss_dssp TTSCEEEESCTT-SCHHHH
T ss_pred CCCcEEEECCCC-chHHHH
Confidence 456899999999 999964
No 410
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=34.22 E-value=25 Score=38.14 Aligned_cols=25 Identities=4% Similarity=0.098 Sum_probs=19.6
Q ss_pred HHHHHhcCCcEEEE--cCCCcchhHHHH
Q 011963 210 FWKCYSSAKDILET--SGSSSTIVQIAW 235 (474)
Q Consensus 210 ~i~~~l~g~dvl~~--A~TG~SGKTlaf 235 (474)
.+..+++|.|..+- .+|| ||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtg-sGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTG-SGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTT-SSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCC-Cchhhcc
Confidence 56788999875444 5999 9999874
No 411
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=34.08 E-value=22 Score=34.58 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=16.6
Q ss_pred HhcCCcEEEEcCCCcchhHH
Q 011963 214 YSSAKDILETSGSSSTIVQI 233 (474)
Q Consensus 214 ~l~g~dvl~~A~TG~SGKTl 233 (474)
+..|..++++.||| ||||.
T Consensus 168 i~~g~~v~i~G~~G-sGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTG-SGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTT-SCHHH
T ss_pred ccCCCEEEEECCCC-CCHHH
Confidence 45688999999999 99985
No 412
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=34.07 E-value=1.9e+02 Score=26.39 Aligned_cols=83 Identities=12% Similarity=0.063 Sum_probs=48.0
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEecc------------HHHHHHHHHHHHhcccC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS------------QEKAAKVRSVCKPLKAF 282 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Pt------------reLa~Qi~~~~~~l~~~ 282 (474)
+.|+-+||+..+||-|+.+|-. +.. .|..++++.-. .+-..+....+...
T Consensus 11 l~gk~vlVTGas~gIG~~ia~~------l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 72 (278)
T 3sx2_A 11 LTGKVAFITGAARGQGRAHAVR------LAA---------DGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI--- 72 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHH------HHH---------TTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH---
T ss_pred CCCCEEEEECCCChHHHHHHHH------HHH---------CCCeEEEEecccccccccccccchHHHHHHHHHHHhc---
Confidence 5788899988777667655433 333 25565555422 44444444444433
Q ss_pred CcEEEEEecCCCHHHHHHHHhc------CCCcEEEEChH
Q 011963 283 GIHTVSLHPGAAIDHQITGLRS------CEPEFLVSTPE 315 (474)
Q Consensus 283 ~i~v~~~~gg~~~~~q~~~l~~------~~~~IlV~TP~ 315 (474)
+-++..+..+.........+-. +++|+||-..|
T Consensus 73 ~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg 111 (278)
T 3sx2_A 73 GSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAG 111 (278)
T ss_dssp TCCEEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4456666667664444333321 36999998876
No 413
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=33.90 E-value=36 Score=35.41 Aligned_cols=55 Identities=13% Similarity=0.046 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCccc---chHHHHHHHhhc
Q 011963 415 LKGIQVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSIS---TGSNCIVSHIKN 473 (474)
Q Consensus 415 ~~l~~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v~---~~r~~~i~~Fk~ 473 (474)
..+...|..++... ++.+||||+|...++.++..|....+-+. ..++..++.|++
T Consensus 370 ~~~~~~l~~~~~~~----~g~~lvff~S~~~~~~v~~~l~~~~~~~q~~~~~~~~~l~~f~~ 427 (540)
T 2vl7_A 370 PIYSILLKRIYENS----SKSVLVFFPSYEMLESVRIHLSGIPVIEENKKTRHEEVLELMKT 427 (540)
T ss_dssp HHHHHHHHHHHHTC----SSEEEEEESCHHHHHHHHTTCTTSCEEESTTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC----CCCEEEEeCCHHHHHHHHHHhccCceEecCCCCcHHHHHHHHhc
Confidence 44556666666542 57999999999999999999976333332 367788999974
No 414
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*
Probab=33.81 E-value=1.9e+02 Score=25.92 Aligned_cols=83 Identities=11% Similarity=0.138 Sum_probs=45.6
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEec-cHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS-SQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~P-treLa~Qi~~~~~~l~~~~i~v~~~~gg~ 293 (474)
+.|+-+||...+||-|..++- .+.. .+..++++.- ..+-...+...+... +-++..+.++.
T Consensus 5 l~~k~vlITGasggiG~~~a~------~l~~---------~G~~V~~~~r~~~~~~~~~~~~l~~~---~~~~~~~~~D~ 66 (261)
T 1gee_A 5 LEGKVVVITGSSTGLGKSMAI------RFAT---------EKAKVVVNYRSKEDEANSVLEEIKKV---GGEAIAVKGDV 66 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHH------HHHH---------TTCEEEEEESSCHHHHHHHHHHHHHT---TCEEEEEECCT
T ss_pred CCCCEEEEeCCCChHHHHHHH------HHHH---------CCCEEEEEcCCChHHHHHHHHHHHhc---CCceEEEECCC
Confidence 467788888777756665443 3333 2446566655 555444444444433 44555566665
Q ss_pred CHHHHHHHHhc------CCCcEEEEChH
Q 011963 294 AIDHQITGLRS------CEPEFLVSTPE 315 (474)
Q Consensus 294 ~~~~q~~~l~~------~~~~IlV~TP~ 315 (474)
........+-. +++|+||-..|
T Consensus 67 ~~~~~~~~~~~~~~~~~g~id~li~~Ag 94 (261)
T 1gee_A 67 TVESDVINLVQSAIKEFGKLDVMINNAG 94 (261)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 54333322211 36899998765
No 415
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=33.78 E-value=2.9e+02 Score=25.60 Aligned_cols=37 Identities=8% Similarity=0.088 Sum_probs=28.7
Q ss_pred HHHHHHhhc-cCCCCCCcEEEEEccchhHHHHHHHHhhCCCc
Q 011963 419 QVLDHAYGD-HFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (474)
Q Consensus 419 ~lL~~ll~~-~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~ 459 (474)
..+..++.. + ..+.-|||.+...|..+...|+..|+.
T Consensus 185 ~~~~~ll~~~~----~~~~aI~~~nd~~A~g~~~al~~~G~~ 222 (332)
T 2rjo_A 185 PIMQAWMTRFN----SKIKGVWAANDDMALGAIEALRAEGLA 222 (332)
T ss_dssp HHHHHHHHHHG----GGEEEEEESSHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHhcC----CCeeEEEECCCchHHHHHHHHHHcCCC
Confidence 445555544 3 357899999999999999999999985
No 416
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=33.74 E-value=2.7e+02 Score=25.19 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=29.9
Q ss_pred HHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 419 ~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
..+..++..+ ..+.-|||.+...|..+...|+..|+.+
T Consensus 186 ~~~~~~l~~~----~~~~ai~~~~d~~a~g~~~al~~~g~~v 223 (293)
T 2iks_A 186 QLFEKWLETH----PMPQALFTTSFALLQGVMDVTLRRDGKL 223 (293)
T ss_dssp HHHHHHTTTS----CCCSEEEESSHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcC----CCCCEEEECChHHHHHHHHHHHHcCCCC
Confidence 5666776554 3577899999999999999999888764
No 417
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=33.69 E-value=1.9e+02 Score=26.91 Aligned_cols=83 Identities=8% Similarity=0.026 Sum_probs=47.3
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEecc------------HHHHHHHHHHHHhcccC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS------------QEKAAKVRSVCKPLKAF 282 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Pt------------reLa~Qi~~~~~~l~~~ 282 (474)
+.|+-+||+..+||-|..+|-. +.. .|..++++.-. .+-+.+....+...
T Consensus 26 l~gk~~lVTGas~GIG~aia~~------la~---------~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 87 (299)
T 3t7c_A 26 VEGKVAFITGAARGQGRSHAIT------LAR---------EGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL--- 87 (299)
T ss_dssp TTTCEEEEESTTSHHHHHHHHH------HHH---------TTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT---
T ss_pred cCCCEEEEECCCCHHHHHHHHH------HHH---------CCCEEEEEecccccccccccccCHHHHHHHHHHHHhc---
Confidence 5678889888777567655433 233 25566665432 44444444444433
Q ss_pred CcEEEEEecCCCHHHHHHHHhc------CCCcEEEEChH
Q 011963 283 GIHTVSLHPGAAIDHQITGLRS------CEPEFLVSTPE 315 (474)
Q Consensus 283 ~i~v~~~~gg~~~~~q~~~l~~------~~~~IlV~TP~ 315 (474)
+-++..+..+.........+-. +++|+||...|
T Consensus 88 ~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg 126 (299)
T 3t7c_A 88 GRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAA 126 (299)
T ss_dssp TCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCceEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 4556666666654444333321 36899998765
No 418
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=33.69 E-value=57 Score=29.69 Aligned_cols=27 Identities=7% Similarity=-0.071 Sum_probs=19.2
Q ss_pred HHHHHHHhcC----CcEEEEcCCCcchhHHHH
Q 011963 208 IEFWKCYSSA----KDILETSGSSSTIVQIAW 235 (474)
Q Consensus 208 ~~~i~~~l~g----~dvl~~A~TG~SGKTlaf 235 (474)
..++..++.+ +.+++..|.| +|||..+
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPG-tGKTt~a 75 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPAN-TGKSYFG 75 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGG-GCHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCC-CCHHHHH
Confidence 4455556665 3589999999 9999543
No 419
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=33.64 E-value=1e+02 Score=28.63 Aligned_cols=83 Identities=12% Similarity=0.026 Sum_probs=51.0
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
|.||-+||+..++|-|+..|- .+.. .|-.+++..-..+.+.++.+.+... +.++..+..+..
T Consensus 7 L~gKvalVTGas~GIG~aia~------~la~---------~Ga~Vvi~~~~~~~~~~~~~~l~~~---g~~~~~~~~Dv~ 68 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAE------GLAA---------AGARVILNDIRATLLAESVDTLTRK---GYDAHGVAFDVT 68 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHH------HHHH---------TTCEEEECCSCHHHHHHHHHHHHHT---TCCEEECCCCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHH------HHHH---------CCCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEEeeCC
Confidence 578888887655545554333 3333 3667777766666666665555544 556667777766
Q ss_pred HHHHHHHHh------cCCCcEEEEChH
Q 011963 295 IDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
...+...+- -+++||||..-|
T Consensus 69 ~~~~v~~~~~~~~~~~G~iDiLVNNAG 95 (255)
T 4g81_D 69 DELAIEAAFSKLDAEGIHVDILINNAG 95 (255)
T ss_dssp CHHHHHHHHHHHHHTTCCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHCCCCcEEEECCC
Confidence 555544331 246899998765
No 420
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=33.54 E-value=18 Score=33.96 Aligned_cols=21 Identities=14% Similarity=-0.078 Sum_probs=16.6
Q ss_pred HhcCCcEEEEcCCCcchhHHHH
Q 011963 214 YSSAKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 214 ~l~g~dvl~~A~TG~SGKTlaf 235 (474)
+..|.-++++.||| ||||..+
T Consensus 22 i~~g~~v~i~Gp~G-sGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTG-SGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTT-CSHHHHH
T ss_pred hCCCCEEEEECCCC-ccHHHHH
Confidence 45667789999999 9998543
No 421
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=33.50 E-value=15 Score=36.10 Aligned_cols=15 Identities=13% Similarity=-0.057 Sum_probs=12.8
Q ss_pred CcEEEEcCCCcchhHH
Q 011963 218 KDILETSGSSSTIVQI 233 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTl 233 (474)
+-++++.||| ||||-
T Consensus 41 ~lIvI~GPTg-sGKTt 55 (339)
T 3a8t_A 41 KLLVLMGATG-TGKSR 55 (339)
T ss_dssp EEEEEECSTT-SSHHH
T ss_pred ceEEEECCCC-CCHHH
Confidence 3578999999 99994
No 422
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=33.36 E-value=34 Score=31.90 Aligned_cols=21 Identities=5% Similarity=-0.270 Sum_probs=16.8
Q ss_pred HhcCCcEEEEcCCCcchhHHHH
Q 011963 214 YSSAKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 214 ~l~g~dvl~~A~TG~SGKTlaf 235 (474)
+..|.-+++.+|.| +|||.-.
T Consensus 27 l~~G~i~~i~G~~G-sGKTtl~ 47 (279)
T 1nlf_A 27 MVAGTVGALVSPGG-AGKSMLA 47 (279)
T ss_dssp EETTSEEEEEESTT-SSHHHHH
T ss_pred ccCCCEEEEEcCCC-CCHHHHH
Confidence 55677889999999 9999543
No 423
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=33.31 E-value=33 Score=33.01 Aligned_cols=41 Identities=10% Similarity=0.062 Sum_probs=27.7
Q ss_pred CCCcceEEeccccc-cCC--hhHHHHHHhhCCCCCcEEEEEccC
Q 011963 328 VSGVSLLVVDRLDS-LSK--GDTLSLIRQSISGKPHTVVFNDCL 368 (474)
Q Consensus 328 l~~l~~lViDEad~-ll~--~~~l~~Il~~l~~~~q~llfSAT~ 368 (474)
+..-+++||||+|. |.. .+.+..++...|....+|+.+.++
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~ 117 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKL 117 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCC
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 45678999999999 765 666777777655555455444333
No 424
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=33.08 E-value=1.5e+02 Score=27.06 Aligned_cols=87 Identities=14% Similarity=0.029 Sum_probs=47.4
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||...+||-|..++-. +.. .|..++++.-..+-...+...+......+-++..+.++..
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~------l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 68 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVL------FAR---------EGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVT 68 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTT
T ss_pred CCCCEEEEeCCCchHHHHHHHH------HHH---------CCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccC
Confidence 4577788877777666654432 333 2556666666555444444444322222334555566655
Q ss_pred HHHHHHHHhc------CCCcEEEEChHH
Q 011963 295 IDHQITGLRS------CEPEFLVSTPER 316 (474)
Q Consensus 295 ~~~q~~~l~~------~~~~IlV~TP~r 316 (474)
.......+-. +++|+||-..|.
T Consensus 69 ~~~~~~~~~~~~~~~~g~id~lv~~Ag~ 96 (278)
T 1spx_A 69 TDAGQDEILSTTLGKFGKLDILVNNAGA 96 (278)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCC-
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4433332211 369999988764
No 425
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=32.99 E-value=20 Score=34.98 Aligned_cols=15 Identities=0% Similarity=-0.243 Sum_probs=12.2
Q ss_pred cEEEEcCCCcchhHHH
Q 011963 219 DILETSGSSSTIVQIA 234 (474)
Q Consensus 219 dvl~~A~TG~SGKTla 234 (474)
=+++++||| ||||..
T Consensus 5 ~i~i~Gptg-sGKt~l 19 (322)
T 3exa_A 5 LVAIVGPTA-VGKTKT 19 (322)
T ss_dssp EEEEECCTT-SCHHHH
T ss_pred EEEEECCCc-CCHHHH
Confidence 467889999 999943
No 426
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=32.82 E-value=1e+02 Score=28.41 Aligned_cols=83 Identities=13% Similarity=0.112 Sum_probs=49.3
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||...+||-|..+|- .+.. .|..++++.-..+-+.++...+... +.++..+..+..
T Consensus 24 l~gk~~lVTGas~gIG~aia~------~la~---------~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dv~ 85 (271)
T 4ibo_A 24 LGGRTALVTGSSRGLGRAMAE------GLAV---------AGARILINGTDPSRVAQTVQEFRNV---GHDAEAVAFDVT 85 (271)
T ss_dssp CTTCEEEETTCSSHHHHHHHH------HHHH---------TTCEEEECCSCHHHHHHHHHHHHHT---TCCEEECCCCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEEcCCC
Confidence 567888888777656665443 3333 3567777776666666665555443 445555666655
Q ss_pred HHHHHHHHh------cCCCcEEEEChH
Q 011963 295 IDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
.......+- -+++|+||-..|
T Consensus 86 d~~~v~~~~~~~~~~~g~iD~lv~nAg 112 (271)
T 4ibo_A 86 SESEIIEAFARLDEQGIDVDILVNNAG 112 (271)
T ss_dssp CHHHHHHHHHHHHHHTCCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence 444333321 136899998765
No 427
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=32.78 E-value=95 Score=28.85 Aligned_cols=83 Identities=12% Similarity=-0.025 Sum_probs=48.3
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||+..+||-|+.+|- .+.. .|..++++.-+.+-+.++...+. ..+-++..+..+..
T Consensus 6 l~gk~vlVTGas~GIG~aia~------~la~---------~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dv~ 67 (280)
T 3tox_A 6 LEGKIAIVTGASSGIGRAAAL------LFAR---------EGAKVVVTARNGNALAELTDEIA---GGGGEAAALAGDVG 67 (280)
T ss_dssp TTTCEEEESSTTSHHHHHHHH------HHHH---------TTCEEEECCSCHHHHHHHHHHHT---TTTCCEEECCCCTT
T ss_pred CCCCEEEEECCCcHHHHHHHH------HHHH---------CCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEECCCC
Confidence 467888887776656665443 2333 35676666666655555544443 23555666666665
Q ss_pred HHHHHHHHhc------CCCcEEEEChH
Q 011963 295 IDHQITGLRS------CEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~~------~~~~IlV~TP~ 315 (474)
.......+-. +++|+||-..|
T Consensus 68 ~~~~v~~~~~~~~~~~g~iD~lvnnAg 94 (280)
T 3tox_A 68 DEALHEALVELAVRRFGGLDTAFNNAG 94 (280)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4444333321 36899998765
No 428
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=32.77 E-value=80 Score=29.23 Aligned_cols=82 Identities=13% Similarity=0.066 Sum_probs=46.9
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||+..+||-|..+|- .+.. .|..++++.-. +-..+.... +...+-++..+..+..
T Consensus 29 l~gk~~lVTGas~GIG~aia~------~la~---------~G~~V~~~~r~-~~~~~~~~~---~~~~~~~~~~~~~Dv~ 89 (273)
T 3uf0_A 29 LAGRTAVVTGAGSGIGRAIAH------GYAR---------AGAHVLAWGRT-DGVKEVADE---IADGGGSAEAVVADLA 89 (273)
T ss_dssp CTTCEEEEETTTSHHHHHHHH------HHHH---------TTCEEEEEESS-THHHHHHHH---HHTTTCEEEEEECCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHH------HHHH---------CCCEEEEEcCH-HHHHHHHHH---HHhcCCcEEEEEecCC
Confidence 578889998877766665443 2333 35566666633 323333333 3333556666666665
Q ss_pred HHHHHHHHhc-----CCCcEEEEChH
Q 011963 295 IDHQITGLRS-----CEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~~-----~~~~IlV~TP~ 315 (474)
.......+.. +++|+||-..|
T Consensus 90 d~~~v~~~~~~~~~~g~iD~lv~nAg 115 (273)
T 3uf0_A 90 DLEGAANVAEELAATRRVDVLVNNAG 115 (273)
T ss_dssp CHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHhcCCCcEEEECCC
Confidence 4444333321 47999998765
No 429
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=32.76 E-value=1.9e+02 Score=26.33 Aligned_cols=85 Identities=12% Similarity=0.044 Sum_probs=50.3
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||+..+||-|..+|- .+.. .|..++++.-+.+-+.+....+.... .+..+..+..+..
T Consensus 8 l~~k~~lVTGas~gIG~aia~------~l~~---------~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~~D~~ 71 (267)
T 3t4x_A 8 LKGKTALVTGSTAGIGKAIAT------SLVA---------EGANVLINGRREENVNETIKEIRAQY-PDAILQPVVADLG 71 (267)
T ss_dssp CTTCEEEETTCSSHHHHHHHH------HHHH---------TTCEEEEEESSHHHHHHHHHHHHHHC-TTCEEEEEECCTT
T ss_pred cCCCEEEEeCCCcHHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHhhC-CCceEEEEecCCC
Confidence 457778887666655654443 3333 36677777777666666666555431 2445556666665
Q ss_pred HHHHHHHHhc--CCCcEEEEChH
Q 011963 295 IDHQITGLRS--CEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~~--~~~~IlV~TP~ 315 (474)
.......+.. +++|+||-..|
T Consensus 72 ~~~~~~~~~~~~g~id~lv~nAg 94 (267)
T 3t4x_A 72 TEQGCQDVIEKYPKVDILINNLG 94 (267)
T ss_dssp SHHHHHHHHHHCCCCSEEEECCC
T ss_pred CHHHHHHHHHhcCCCCEEEECCC
Confidence 4444433322 36899998766
No 430
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=32.71 E-value=19 Score=33.76 Aligned_cols=18 Identities=17% Similarity=-0.009 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCcchhHHHH
Q 011963 217 AKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf 235 (474)
++.+++..|+| +|||...
T Consensus 54 ~~~vll~Gp~G-tGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPG-NGKTLLA 71 (297)
T ss_dssp CSEEEEESSSS-SCHHHHH
T ss_pred CCeEEEECcCC-CCHHHHH
Confidence 57899999999 9999643
No 431
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=32.67 E-value=21 Score=33.39 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCcchhHHH
Q 011963 216 SAKDILETSGSSSTIVQIA 234 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (474)
.+..+++..|+| +|||..
T Consensus 49 ~~~~vll~G~~G-tGKT~l 66 (310)
T 1ofh_A 49 TPKNILMIGPTG-VGKTEI 66 (310)
T ss_dssp CCCCEEEECCTT-SSHHHH
T ss_pred CCceEEEECCCC-CCHHHH
Confidence 457899999999 999954
No 432
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=32.58 E-value=2.9e+02 Score=25.12 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=28.5
Q ss_pred HHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCc
Q 011963 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (474)
Q Consensus 419 ~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~ 459 (474)
..+..++..+ +....|||.+...|..+...|+..|+.
T Consensus 177 ~~~~~~l~~~----~~~~ai~~~~d~~A~g~~~al~~~g~~ 213 (297)
T 3rot_A 177 SRVKSYFKIH----PETNIIFCLTSQALDPLGQMLLHPDRY 213 (297)
T ss_dssp HHHHHHHHHC----TTCCEEEESSHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHhC----CCCCEEEEcCCcchHHHHHHHHhcCCc
Confidence 5556655554 356789999999999999999888764
No 433
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=32.51 E-value=20 Score=30.56 Aligned_cols=17 Identities=24% Similarity=0.110 Sum_probs=13.9
Q ss_pred CCcEEEEcCCCcchhHHH
Q 011963 217 AKDILETSGSSSTIVQIA 234 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (474)
++-++++.+.| ||||..
T Consensus 3 ~~~i~l~G~~G-sGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSS-AGKSGI 19 (178)
T ss_dssp CCEEEEECCTT-SSHHHH
T ss_pred ceEEEEECCCC-CCHHHH
Confidence 45688999999 999853
No 434
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=32.48 E-value=20 Score=34.79 Aligned_cols=14 Identities=7% Similarity=-0.062 Sum_probs=11.8
Q ss_pred EEEEcCCCcchhHHH
Q 011963 220 ILETSGSSSTIVQIA 234 (474)
Q Consensus 220 vl~~A~TG~SGKTla 234 (474)
+++++||| ||||..
T Consensus 13 i~i~Gptg-sGKt~l 26 (316)
T 3foz_A 13 IFLMGPTA-SGKTAL 26 (316)
T ss_dssp EEEECCTT-SCHHHH
T ss_pred EEEECCCc-cCHHHH
Confidence 67889999 999953
No 435
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=32.47 E-value=25 Score=31.14 Aligned_cols=19 Identities=5% Similarity=-0.001 Sum_probs=14.4
Q ss_pred cCCcEEEEcCCCcchhHHHH
Q 011963 216 SAKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf 235 (474)
.|+-+.++.|+| +|||...
T Consensus 3 ~g~~i~lvGpsG-aGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSG-AGKSTLL 21 (198)
T ss_dssp --CCEEEECCTT-SSHHHHH
T ss_pred CCCEEEEECCCC-CCHHHHH
Confidence 467789999999 9998543
No 436
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=32.43 E-value=2e+02 Score=26.24 Aligned_cols=83 Identities=16% Similarity=0.109 Sum_probs=46.8
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHH-HhcccCCcEEEEEecCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVC-KPLKAFGIHTVSLHPGA 293 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~-~~l~~~~i~v~~~~gg~ 293 (474)
+.|+-+||...+||-|+.+|-. +.. .|..++++.-+.+-...+...+ ... +.++..+.++.
T Consensus 19 l~~k~~lVTGas~gIG~~ia~~------l~~---------~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~~Dl 80 (267)
T 1vl8_A 19 LRGRVALVTGGSRGLGFGIAQG------LAE---------AGCSVVVASRNLEEASEAAQKLTEKY---GVETMAFRCDV 80 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHHHH---CCCEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHH------HHH---------CCCEEEEEeCCHHHHHHHHHHHHHhc---CCeEEEEEcCC
Confidence 5678889988887677765543 232 2556666666655444444443 222 33455555665
Q ss_pred CHHHHHHHHh------cCCCcEEEEChH
Q 011963 294 AIDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 294 ~~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
........+- -+++|+||-..|
T Consensus 81 ~~~~~v~~~~~~~~~~~g~iD~lvnnAg 108 (267)
T 1vl8_A 81 SNYEEVKKLLEAVKEKFGKLDTVVNAAG 108 (267)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 5443333221 136899997765
No 437
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=32.42 E-value=1.8e+02 Score=26.85 Aligned_cols=83 Identities=14% Similarity=0.055 Sum_probs=49.4
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.++-+||...+||-|..+|- .+.. .|..++++.-..+-+.++...+.. .+-++..+..+..
T Consensus 26 ~~~k~~lVTGas~GIG~aia~------~la~---------~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~ 87 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATAL------ALAA---------DGVTVGALGRTRTEVEEVADEIVG---AGGQAIALEADVS 87 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHHH------HHHH---------TTCEEEEEESSHHHHHHHHHHHTT---TTCCEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEccCC
Confidence 457778888777756665443 2333 366777777777666655555443 3445666666665
Q ss_pred HHHHHHHHh------cCCCcEEEEChH
Q 011963 295 IDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
.......+- -+++|+||-..|
T Consensus 88 d~~~v~~~~~~~~~~~g~iD~lVnnAg 114 (283)
T 3v8b_A 88 DELQMRNAVRDLVLKFGHLDIVVANAG 114 (283)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 444333221 136999998765
No 438
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=32.22 E-value=16 Score=32.89 Aligned_cols=18 Identities=11% Similarity=-0.008 Sum_probs=15.6
Q ss_pred hcCCcEEEEcCCCcchhHH
Q 011963 215 SSAKDILETSGSSSTIVQI 233 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTl 233 (474)
+.|+=+++++|+| +|||-
T Consensus 17 ~~g~~ivl~GPSG-aGKsT 34 (197)
T 3ney_A 17 QGRKTLVLIGASG-VGRSH 34 (197)
T ss_dssp CSCCEEEEECCTT-SSHHH
T ss_pred CCCCEEEEECcCC-CCHHH
Confidence 4678889999999 99985
No 439
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=32.21 E-value=32 Score=43.07 Aligned_cols=50 Identities=6% Similarity=0.131 Sum_probs=34.2
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHH---HHHHhcCCcEEEEcCCCcchhHHHHHH
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEF---WKCYSSAKDILETSGSSSTIVQIAWIV 237 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~---i~~~l~g~dvl~~A~TG~SGKTlaf~l 237 (474)
+...+.+++.++|+. +++. |-..+ ...+.....|++..||| ||||.++-+
T Consensus 890 l~~~i~~~~~~~~l~-~~~~----~~~K~~ql~e~~~~r~gvmlvGptg-sGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEE----FLKKCMQFYYMQKTQQALILVGKAG-CGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHH----HHHHHHHHHHHHHHCSEEEEECSTT-SSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHH----HHHHHHHHHHHHHhcceEEEECCCC-CCHHHHHHH
Confidence 566777888888876 3332 12222 23445567899999999 999998753
No 440
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=32.21 E-value=21 Score=31.40 Aligned_cols=18 Identities=11% Similarity=-0.143 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCcchhHHH
Q 011963 216 SAKDILETSGSSSTIVQIA 234 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (474)
.++-++++.|+| ||||..
T Consensus 24 ~~~~i~l~G~~G-sGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMG-AGKTTL 41 (199)
T ss_dssp CCCEEEEECCTT-SCHHHH
T ss_pred CCCEEEEEcCCC-CCHHHH
Confidence 567889999999 999854
No 441
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=32.20 E-value=21 Score=32.52 Aligned_cols=17 Identities=12% Similarity=-0.052 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCcchhHHH
Q 011963 217 AKDILETSGSSSTIVQIA 234 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (474)
.+.+++..|+| +|||..
T Consensus 39 ~~~vll~G~~G-tGKT~l 55 (262)
T 2qz4_A 39 PKGALLLGPPG-CGKTLL 55 (262)
T ss_dssp CCEEEEESCTT-SSHHHH
T ss_pred CceEEEECCCC-CCHHHH
Confidence 45789999999 999964
No 442
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=32.18 E-value=2.1e+02 Score=25.87 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=46.5
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||...+||-|..++- .+.. .+..++++.-..+-...+...+.. .+.++..+..+..
T Consensus 5 l~~k~vlVTGas~gIG~~ia~------~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~ 66 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATAL------RLAE---------EGTAIALLDMNREALEKAEASVRE---KGVEARSYVCDVT 66 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHH------HHHH---------TTCEEEEEESCHHHHHHHHHHHHT---TTSCEEEEECCTT
T ss_pred cCCCEEEEeCCCcHHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEecCC
Confidence 467888998887767765443 2333 255666666555544444444433 2445555666655
Q ss_pred HHHHHHHHh------cCCCcEEEEChH
Q 011963 295 IDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
.......+- -+++|+||...|
T Consensus 67 ~~~~~~~~~~~~~~~~g~id~lv~nAg 93 (262)
T 1zem_A 67 SEEAVIGTVDSVVRDFGKIDFLFNNAG 93 (262)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 433332221 136899998765
No 443
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=32.07 E-value=2.1e+02 Score=26.01 Aligned_cols=83 Identities=10% Similarity=0.018 Sum_probs=46.9
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEecc------------HHHHHHHHHHHHhcccC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS------------QEKAAKVRSVCKPLKAF 282 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Pt------------reLa~Qi~~~~~~l~~~ 282 (474)
+.|+-+||+..+||-|..+|-. +.. .|..++++.-. .+-..+....+...
T Consensus 8 l~gk~vlVTGas~gIG~~ia~~------l~~---------~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 69 (287)
T 3pxx_A 8 VQDKVVLVTGGARGQGRSHAVK------LAE---------EGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT--- 69 (287)
T ss_dssp TTTCEEEEETTTSHHHHHHHHH------HHH---------TTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT---
T ss_pred cCCCEEEEeCCCChHHHHHHHH------HHH---------CCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc---
Confidence 5688899988877666654433 333 25566555432 44444444444333
Q ss_pred CcEEEEEecCCCHHHHHHHHh------cCCCcEEEEChH
Q 011963 283 GIHTVSLHPGAAIDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 283 ~i~v~~~~gg~~~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
+.++..+..+.........+- -+++|+||-..|
T Consensus 70 ~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg 108 (287)
T 3pxx_A 70 GRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAG 108 (287)
T ss_dssp TSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 455666666665444433221 136899998765
No 444
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=31.96 E-value=20 Score=33.29 Aligned_cols=18 Identities=22% Similarity=0.091 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCcchhHHH
Q 011963 216 SAKDILETSGSSSTIVQIA 234 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (474)
.++.+++..|+| +|||..
T Consensus 50 ~~~~~ll~G~~G-tGKT~l 67 (285)
T 3h4m_A 50 PPKGILLYGPPG-TGKTLL 67 (285)
T ss_dssp CCSEEEEESSSS-SSHHHH
T ss_pred CCCeEEEECCCC-CcHHHH
Confidence 456799999999 999964
No 445
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=31.90 E-value=1e+02 Score=28.57 Aligned_cols=83 Identities=14% Similarity=0.122 Sum_probs=48.8
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||+..+||-|..+|- .+.. .+..++++.-..+-..++...+... +-++..+..+..
T Consensus 30 l~gk~~lVTGas~GIG~aia~------~la~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~ 91 (276)
T 3r1i_A 30 LSGKRALITGASTGIGKKVAL------AYAE---------AGAQVAVAARHSDALQVVADEIAGV---GGKALPIRCDVT 91 (276)
T ss_dssp CTTCEEEEESTTSHHHHHHHH------HHHH---------TTCEEEEEESSGGGGHHHHHHHHHT---TCCCEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEEcCCC
Confidence 568889998877766665443 2333 3557777776655555555555443 334445556655
Q ss_pred HHHHHHHHhc------CCCcEEEEChH
Q 011963 295 IDHQITGLRS------CEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~~------~~~~IlV~TP~ 315 (474)
....+..+-. +++|+||-..|
T Consensus 92 d~~~v~~~~~~~~~~~g~iD~lvnnAg 118 (276)
T 3r1i_A 92 QPDQVRGMLDQMTGELGGIDIAVCNAG 118 (276)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4443333221 36899998765
No 446
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Probab=31.69 E-value=1.7e+02 Score=26.10 Aligned_cols=83 Identities=22% Similarity=0.226 Sum_probs=45.2
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEec-cHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS-SQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~P-treLa~Qi~~~~~~l~~~~i~v~~~~gg~ 293 (474)
+.|+-+||...+||-|..++- .+.. .+..++++.- ..+-..++...+... +-++..+..+.
T Consensus 2 l~~k~vlVTGas~giG~~ia~------~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~ 63 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAI------DLAK---------QGANVVVNYAGNEQKANEVVDEIKKL---GSDAIAVRADV 63 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHH------HHHH---------TTCEEEEEESSCHHHHHHHHHHHHHT---TCCEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHH------HHHH---------CCCEEEEEeCCCHHHHHHHHHHHHhc---CCcEEEEEcCC
Confidence 357778887777756665443 2333 2556666554 555444444444433 33455555665
Q ss_pred CHHHHHHHHhc------CCCcEEEEChH
Q 011963 294 AIDHQITGLRS------CEPEFLVSTPE 315 (474)
Q Consensus 294 ~~~~q~~~l~~------~~~~IlV~TP~ 315 (474)
........+-. +++|+||-..|
T Consensus 64 ~~~~~~~~~~~~~~~~~g~id~lv~nAg 91 (246)
T 2uvd_A 64 ANAEDVTNMVKQTVDVFGQVDILVNNAG 91 (246)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 54433332211 36899998765
No 447
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=31.65 E-value=3.2e+02 Score=25.37 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=28.0
Q ss_pred HHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 419 ~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
..+..++.. . +.-|||.+...|..+...|+..|+.+
T Consensus 230 ~~~~~ll~~-~-----~~ai~~~~d~~A~g~~~al~~~G~~v 265 (332)
T 2o20_A 230 ALAERLLER-G-----ATSAVVSHDTVAVGLLSAMMDKGVKV 265 (332)
T ss_dssp HHHHHHHHT-T-----CCEEEESCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHhcc-C-----CCEEEECChHHHHHHHHHHHHcCCCC
Confidence 445555543 3 67899999999999999999999864
No 448
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=31.34 E-value=28 Score=33.86 Aligned_cols=31 Identities=3% Similarity=-0.291 Sum_probs=21.4
Q ss_pred HHHHHHHhcC-----CcEEEEcCCCcchhHHHHHHHHH
Q 011963 208 IEFWKCYSSA-----KDILETSGSSSTIVQIAWIVATA 240 (474)
Q Consensus 208 ~~~i~~~l~g-----~dvl~~A~TG~SGKTlaf~lp~l 240 (474)
...+..++.| .-+++.+|+| ||||. |++-++
T Consensus 108 ~~~LD~~LgGGl~~G~i~~I~G~~G-sGKTt-la~~la 143 (343)
T 1v5w_A 108 SQEFDKLLGGGIESMAITEAFGEFR-TGKTQ-LSHTLC 143 (343)
T ss_dssp CHHHHHHTTSSBCSSEEEEEECCTT-CTHHH-HHHHHH
T ss_pred ChhHHHHhcCCCCCCeEEEEECCCC-CCHHH-HHHHHH
Confidence 3557777754 4578889999 99994 444444
No 449
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=31.10 E-value=1.7e+02 Score=26.60 Aligned_cols=84 Identities=11% Similarity=0.050 Sum_probs=50.8
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||+..+||-|..+|-. +.. .+..++++.-+.+-..++...+.... +-++..+..+..
T Consensus 8 l~~k~vlVTGas~gIG~aia~~------l~~---------~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dv~ 70 (262)
T 3pk0_A 8 LQGRSVVVTGGTKGIGRGIATV------FAR---------AGANVAVAGRSTADIDACVADLDQLG--SGKVIGVQTDVS 70 (262)
T ss_dssp CTTCEEEETTCSSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHTTS--SSCEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHH------HHH---------CCCEEEEEeCCHHHHHHHHHHHHhhC--CCcEEEEEcCCC
Confidence 4678888887776566654432 333 36677777777776666666655442 135555666665
Q ss_pred HHHHHHHHh------cCCCcEEEEChH
Q 011963 295 IDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
.......+- -+++|+||-..|
T Consensus 71 ~~~~v~~~~~~~~~~~g~id~lvnnAg 97 (262)
T 3pk0_A 71 DRAQCDALAGRAVEEFGGIDVVCANAG 97 (262)
T ss_dssp SHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 444433321 136899998766
No 450
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*
Probab=30.88 E-value=2e+02 Score=25.91 Aligned_cols=83 Identities=16% Similarity=0.092 Sum_probs=45.3
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||...+||-|..+|-. +.. .|-.++++.-..+-..++...+... +.++..+..+..
T Consensus 12 l~~k~vlVTGas~gIG~~ia~~------l~~---------~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~D~~ 73 (260)
T 2zat_A 12 LENKVALVTASTDGIGLAIARR------LAQ---------DGAHVVVSSRKQENVDRTVATLQGE---GLSVTGTVCHVG 73 (260)
T ss_dssp TTTCEEEESSCSSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHH------HHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEEccCC
Confidence 4678888887777666655432 333 2556666666555444444443332 344555555554
Q ss_pred HHHHHHHHh------cCCCcEEEEChH
Q 011963 295 IDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
.......+- -+++|+||-..|
T Consensus 74 ~~~~~~~~~~~~~~~~g~iD~lv~~Ag 100 (260)
T 2zat_A 74 KAEDRERLVAMAVNLHGGVDILVSNAA 100 (260)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 333332221 136899997655
No 451
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2
Probab=30.72 E-value=2.7e+02 Score=24.55 Aligned_cols=88 Identities=15% Similarity=0.118 Sum_probs=44.8
Q ss_pred CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHH
Q 011963 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAID 296 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~ 296 (474)
++-+||...+||-|..++-.| ........ .....++++.-..+-..++...+.. .+-++..+.++....
T Consensus 2 ~k~vlITGasggiG~~la~~l------~~~G~~~~--~~~~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~ 70 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEF------ARAARHHP--DFEPVLVLSSRTAADLEKISLECRA---EGALTDTITADISDM 70 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHH------HHHTTTCT--TCCEEEEEEESCHHHHHHHHHHHHT---TTCEEEEEECCTTSH
T ss_pred CCEEEEECCCChHHHHHHHHH------HHhcCccc--ccceEEEEEeCCHHHHHHHHHHHHc---cCCeeeEEEecCCCH
Confidence 456788877776677655432 22210000 0011556666555544444444332 245566666676544
Q ss_pred HHHHHHhc------CCCcEEEEChH
Q 011963 297 HQITGLRS------CEPEFLVSTPE 315 (474)
Q Consensus 297 ~q~~~l~~------~~~~IlV~TP~ 315 (474)
.....+.. +++|+||-..|
T Consensus 71 ~~v~~~~~~~~~~~g~id~li~~Ag 95 (244)
T 2bd0_A 71 ADVRRLTTHIVERYGHIDCLVNNAG 95 (244)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEECCC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 43333321 36899998765
No 452
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=30.61 E-value=32 Score=30.96 Aligned_cols=27 Identities=0% Similarity=-0.061 Sum_probs=22.8
Q ss_pred hHHHHHHHhcCCcEEEEcCCCcchhHHH
Q 011963 207 GIEFWKCYSSAKDILETSGSSSTIVQIA 234 (474)
Q Consensus 207 Q~~~i~~~l~g~dvl~~A~TG~SGKTla 234 (474)
|..++..+..|.-+.+..|.| ||||..
T Consensus 12 ~~~~l~~i~~Ge~~~liG~nG-sGKSTL 38 (208)
T 3b85_A 12 QKHYVDAIDTNTIVFGLGPAG-SGKTYL 38 (208)
T ss_dssp HHHHHHHHHHCSEEEEECCTT-SSTTHH
T ss_pred HHHHHHhccCCCEEEEECCCC-CCHHHH
Confidence 667788888888889999999 999854
No 453
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=30.56 E-value=21 Score=31.83 Aligned_cols=18 Identities=11% Similarity=-0.138 Sum_probs=14.5
Q ss_pred cCCcEEEEcCCCcchhHHH
Q 011963 216 SAKDILETSGSSSTIVQIA 234 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (474)
.|+=++++.|+| +|||..
T Consensus 7 ~g~~i~l~GpsG-sGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSG-VGKGTV 24 (208)
T ss_dssp CCCEEEEECCTT-SCHHHH
T ss_pred CCcEEEEECcCC-CCHHHH
Confidence 456688899999 999853
No 454
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=30.38 E-value=19 Score=30.14 Aligned_cols=13 Identities=23% Similarity=-0.041 Sum_probs=11.4
Q ss_pred EEEEcCCCcchhHH
Q 011963 220 ILETSGSSSTIVQI 233 (474)
Q Consensus 220 vl~~A~TG~SGKTl 233 (474)
++++.|.| ||||.
T Consensus 4 I~l~G~~G-sGKsT 16 (179)
T 3lw7_A 4 ILITGMPG-SGKSE 16 (179)
T ss_dssp EEEECCTT-SCHHH
T ss_pred EEEECCCC-CCHHH
Confidence 67889999 99985
No 455
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=30.29 E-value=1.9e+02 Score=26.90 Aligned_cols=83 Identities=17% Similarity=0.088 Sum_probs=48.0
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEecc--HHHHHHHHHHHHhcccCCcEEEEEecC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS--QEKAAKVRSVCKPLKAFGIHTVSLHPG 292 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Pt--reLa~Qi~~~~~~l~~~~i~v~~~~gg 292 (474)
+.|+-+||...+||-|..+|-. +.. .|..++++.-. .+.+.++...+... +.++..+.++
T Consensus 47 l~~k~vlVTGas~GIG~aia~~------la~---------~G~~V~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~D 108 (294)
T 3r3s_A 47 LKDRKALVTGGDSGIGRAAAIA------YAR---------EGADVAINYLPAEEEDAQQVKALIEEC---GRKAVLLPGD 108 (294)
T ss_dssp TTTCEEEEETTTSHHHHHHHHH------HHH---------TTCEEEEECCGGGHHHHHHHHHHHHHT---TCCEEECCCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHH------HHH---------CCCEEEEEeCCcchhHHHHHHHHHHHc---CCcEEEEEec
Confidence 4688899988877667655433 333 25565555433 34445555554443 4556666666
Q ss_pred CCHHHHHHHHh------cCCCcEEEEChH
Q 011963 293 AAIDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 293 ~~~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
.........+- -+++|+||...|
T Consensus 109 v~d~~~v~~~~~~~~~~~g~iD~lv~nAg 137 (294)
T 3r3s_A 109 LSDESFARSLVHKAREALGGLDILALVAG 137 (294)
T ss_dssp TTSHHHHHHHHHHHHHHHTCCCEEEECCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 65444433332 137899998765
No 456
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=30.27 E-value=21 Score=30.78 Aligned_cols=17 Identities=6% Similarity=-0.205 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCcchhHHH
Q 011963 217 AKDILETSGSSSTIVQIA 234 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTla 234 (474)
++.++++.++| ||||..
T Consensus 5 ~~~i~l~G~~G-sGKst~ 21 (185)
T 3trf_A 5 LTNIYLIGLMG-AGKTSV 21 (185)
T ss_dssp CCEEEEECSTT-SSHHHH
T ss_pred CCEEEEECCCC-CCHHHH
Confidence 56789999999 999853
No 457
>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A
Probab=30.25 E-value=1.7e+02 Score=26.29 Aligned_cols=84 Identities=14% Similarity=0.098 Sum_probs=46.3
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.++-+||...+||-|..++- .+.. .+..++++.-..+-..++...+... +.++..+.++..
T Consensus 12 l~~k~vlITGasggiG~~la~------~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 73 (266)
T 1xq1_A 12 LKAKTVLVTGGTKGIGHAIVE------EFAG---------FGAVIHTCARNEYELNECLSKWQKK---GFQVTGSVCDAS 73 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHH------HHHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCeeEEEECCCC
Confidence 467788888777756665443 2333 2446666665544444444444332 344555566655
Q ss_pred HHHHHHHHhc-------CCCcEEEEChHH
Q 011963 295 IDHQITGLRS-------CEPEFLVSTPER 316 (474)
Q Consensus 295 ~~~q~~~l~~-------~~~~IlV~TP~r 316 (474)
.......+-. +++|+||-..|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~id~li~~Ag~ 102 (266)
T 1xq1_A 74 LRPEREKLMQTVSSMFGGKLDILINNLGA 102 (266)
T ss_dssp SHHHHHHHHHHHHHHHTTCCSEEEEECCC
T ss_pred CHHHHHHHHHHHHHHhCCCCcEEEECCCC
Confidence 4433333321 478999987663
No 458
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=30.07 E-value=19 Score=33.36 Aligned_cols=13 Identities=8% Similarity=-0.276 Sum_probs=11.3
Q ss_pred EEEEcCCCcchhHH
Q 011963 220 ILETSGSSSTIVQI 233 (474)
Q Consensus 220 vl~~A~TG~SGKTl 233 (474)
++++.|+| ||||.
T Consensus 4 i~I~G~~G-SGKST 16 (253)
T 2ze6_A 4 HLIYGPTC-SGKTD 16 (253)
T ss_dssp EEEECCTT-SSHHH
T ss_pred EEEECCCC-cCHHH
Confidence 67889999 99985
No 459
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=29.96 E-value=70 Score=29.18 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=21.5
Q ss_pred ChHHHHHHHHcCCCCCCCcceEEeccc
Q 011963 313 TPERLLKLVSLKAIDVSGVSLLVVDRL 339 (474)
Q Consensus 313 TP~rL~~ll~~~~~~l~~l~~lViDEa 339 (474)
||..+.+.|....++++++.++-+||-
T Consensus 44 tp~~~y~~L~~~~idw~~v~~f~~DEr 70 (226)
T 3lwd_A 44 TPKPFFTSLAAKALPWARVDVTLADER 70 (226)
T ss_dssp TTHHHHHHHHTSCSCGGGEEEEESEEE
T ss_pred CHHHHHHHHHhcCCCchhEEEEEeeec
Confidence 466666666667889999999999993
No 460
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=29.92 E-value=1.2e+02 Score=27.66 Aligned_cols=83 Identities=14% Similarity=0.083 Sum_probs=46.7
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEE-eccHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFL-VSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil-~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~ 293 (474)
+.|+-+||+..+||-|+.+|-. +.. .|..++++ ....+...+....+... +-++..+..+.
T Consensus 6 l~~k~vlVTGas~GIG~aia~~------la~---------~G~~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv 67 (259)
T 3edm_A 6 FTNRTIVVAGAGRDIGRACAIR------FAQ---------EGANVVLTYNGAAEGAATAVAEIEKL---GRSALAIKADL 67 (259)
T ss_dssp TTTCEEEEETTTSHHHHHHHHH------HHH---------TTCEEEEEECSSCHHHHHHHHHHHTT---TSCCEEEECCT
T ss_pred CCCCEEEEECCCchHHHHHHHH------HHH---------CCCEEEEEcCCCHHHHHHHHHHHHhc---CCceEEEEcCC
Confidence 4678889988777566654432 333 35566665 44445555555554443 44455556665
Q ss_pred CHHHHHHHHhc------CCCcEEEEChH
Q 011963 294 AIDHQITGLRS------CEPEFLVSTPE 315 (474)
Q Consensus 294 ~~~~q~~~l~~------~~~~IlV~TP~ 315 (474)
........+-. +++|+||...|
T Consensus 68 ~~~~~v~~~~~~~~~~~g~id~lv~nAg 95 (259)
T 3edm_A 68 TNAAEVEAAISAAADKFGEIHGLVHVAG 95 (259)
T ss_dssp TCHHHHHHHHHHHHHHHCSEEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 54443333221 36899997765
No 461
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=29.92 E-value=2.5e+02 Score=25.62 Aligned_cols=83 Identities=8% Similarity=-0.000 Sum_probs=47.3
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEec-------------cHHHHHHHHHHHHhccc
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS-------------SQEKAAKVRSVCKPLKA 281 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~P-------------treLa~Qi~~~~~~l~~ 281 (474)
+.|+-+||+..+||-|+.+|-. +.. .|..++++.- +.+-+.+....+...
T Consensus 9 l~~k~~lVTGas~GIG~a~a~~------la~---------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 71 (277)
T 3tsc_A 9 LEGRVAFITGAARGQGRAHAVR------MAA---------EGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA-- 71 (277)
T ss_dssp TTTCEEEEESTTSHHHHHHHHH------HHH---------TTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT--
T ss_pred cCCCEEEEECCccHHHHHHHHH------HHH---------cCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc--
Confidence 5678889988777667655443 222 2556555532 444444444444333
Q ss_pred CCcEEEEEecCCCHHHHHHHHhc------CCCcEEEEChH
Q 011963 282 FGIHTVSLHPGAAIDHQITGLRS------CEPEFLVSTPE 315 (474)
Q Consensus 282 ~~i~v~~~~gg~~~~~q~~~l~~------~~~~IlV~TP~ 315 (474)
+.++..+..+.........+-. +++|+||-..|
T Consensus 72 -~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lvnnAg 110 (277)
T 3tsc_A 72 -NRRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAG 110 (277)
T ss_dssp -TCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred -CCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4556666666654444333321 36999998766
No 462
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=29.79 E-value=25 Score=32.92 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=21.5
Q ss_pred CCcceEEeccccccCC--hhHHHHHHhhCCCCCcEEEE
Q 011963 329 SGVSLLVVDRLDSLSK--GDTLSLIRQSISGKPHTVVF 364 (474)
Q Consensus 329 ~~l~~lViDEad~ll~--~~~l~~Il~~l~~~~q~llf 364 (474)
..-.+|||||+|.|.. ...+..++...+....+++.
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~ 138 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILS 138 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEE
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 4568999999999975 33344444433344444443
No 463
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=29.74 E-value=3e+02 Score=26.85 Aligned_cols=91 Identities=8% Similarity=-0.005 Sum_probs=53.5
Q ss_pred HHHHHHHhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCc-EEEEEeccHHHHHHHHHHHHhc-ccCCcE
Q 011963 208 IEFWKCYSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGP-FLLFLVSSQEKAAKVRSVCKPL-KAFGIH 285 (474)
Q Consensus 208 ~~~i~~~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~-~alil~PtreLa~Qi~~~~~~l-~~~~i~ 285 (474)
...+...+.++-++|+..||+-|.-++ ..|.. .++ .++++.-+..-..++...+... ...+..
T Consensus 26 ~~~~~~~~~~k~vLVTGatG~IG~~l~------~~L~~---------~g~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~ 90 (399)
T 3nzo_A 26 EKELQSVVSQSRFLVLGGAGSIGQAVT------KEIFK---------RNPQKLHVVDISENNMVELVRDIRSSFGYINGD 90 (399)
T ss_dssp HHHHHHHHHTCEEEEETTTSHHHHHHH------HHHHT---------TCCSEEEEECSCHHHHHHHHHHHHHHTCCCSSE
T ss_pred HHHHHHHhCCCEEEEEcCChHHHHHHH------HHHHH---------CCCCEEEEEECCcchHHHHHHHHHHhcCCCCCc
Confidence 345566788999999998885555433 33333 253 5556665555555555555443 222456
Q ss_pred EEEEecCCCHHHHHHHH-hcCCCcEEEEC
Q 011963 286 TVSLHPGAAIDHQITGL-RSCEPEFLVST 313 (474)
Q Consensus 286 v~~~~gg~~~~~q~~~l-~~~~~~IlV~T 313 (474)
+..+.++..-......+ ...++|+||-.
T Consensus 91 v~~~~~Dl~d~~~~~~~~~~~~~D~Vih~ 119 (399)
T 3nzo_A 91 FQTFALDIGSIEYDAFIKADGQYDYVLNL 119 (399)
T ss_dssp EEEECCCTTSHHHHHHHHHCCCCSEEEEC
T ss_pred EEEEEEeCCCHHHHHHHHHhCCCCEEEEC
Confidence 77777776544443333 33479999843
No 464
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=29.74 E-value=50 Score=30.51 Aligned_cols=27 Identities=11% Similarity=0.058 Sum_probs=25.1
Q ss_pred CCcEEEEEccchhHHHHHHHHhhCCCc
Q 011963 433 PLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (474)
Q Consensus 433 ~~k~LVF~~s~~~a~~l~~~L~~~gi~ 459 (474)
..++||||.+-.++...+..|...||.
T Consensus 223 ~~~ivvyC~~G~rs~~a~~~L~~~G~~ 249 (271)
T 1e0c_A 223 DKEIVTHCQTHHRSGLTYLIAKALGYP 249 (271)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHHTTCS
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCC
Confidence 679999999999999999999999995
No 465
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=29.73 E-value=59 Score=30.20 Aligned_cols=27 Identities=7% Similarity=0.043 Sum_probs=25.2
Q ss_pred CCcEEEEEccchhHHHHHHHHhhCCCc
Q 011963 433 PLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (474)
Q Consensus 433 ~~k~LVF~~s~~~a~~l~~~L~~~gi~ 459 (474)
..++||||.+-.++...+..|...||.
T Consensus 230 ~~~ivv~C~~G~rs~~a~~~L~~~G~~ 256 (280)
T 1urh_A 230 DKPIIVSCGSGVTAAVVLLALATLDVP 256 (280)
T ss_dssp SSCEEEECCSSSTHHHHHHHHHHTTCS
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCC
Confidence 679999999999999999999999995
No 466
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=29.69 E-value=2.4e+02 Score=25.74 Aligned_cols=83 Identities=12% Similarity=0.011 Sum_probs=47.7
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEec-------------cHHHHHHHHHHHHhccc
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVS-------------SQEKAAKVRSVCKPLKA 281 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~P-------------treLa~Qi~~~~~~l~~ 281 (474)
+.|+-+||+..+||-|..+|-. +.. .|..++++.- +.+-..++...+..
T Consensus 13 l~gk~~lVTGas~gIG~a~a~~------la~---------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 74 (280)
T 3pgx_A 13 LQGRVAFITGAARGQGRSHAVR------LAA---------EGADIIACDICAPVSASVTYAPASPEDLDETARLVED--- 74 (280)
T ss_dssp TTTCEEEEESTTSHHHHHHHHH------HHH---------TTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHT---
T ss_pred cCCCEEEEECCCcHHHHHHHHH------HHH---------CCCEEEEEeccccccccccccccCHHHHHHHHHHHHh---
Confidence 5788899988777666654432 333 2556665543 44444444444443
Q ss_pred CCcEEEEEecCCCHHHHHHHHh------cCCCcEEEEChH
Q 011963 282 FGIHTVSLHPGAAIDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 282 ~~i~v~~~~gg~~~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
.+.++..+..+.........+- -+++|+||-..|
T Consensus 75 ~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg 114 (280)
T 3pgx_A 75 QGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAG 114 (280)
T ss_dssp TTCCEEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_pred cCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 3555666666665444433332 136899998765
No 467
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=29.51 E-value=41 Score=29.33 Aligned_cols=14 Identities=14% Similarity=-0.242 Sum_probs=11.3
Q ss_pred cEEEEcCCCcchhHH
Q 011963 219 DILETSGSSSTIVQI 233 (474)
Q Consensus 219 dvl~~A~TG~SGKTl 233 (474)
=+++++++| ||||.
T Consensus 8 ~i~i~G~sG-sGKTT 21 (174)
T 1np6_A 8 LLAFAAWSG-TGKTT 21 (174)
T ss_dssp EEEEECCTT-SCHHH
T ss_pred EEEEEeCCC-CCHHH
Confidence 367788999 99984
No 468
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=29.30 E-value=53 Score=28.44 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=19.9
Q ss_pred CCcEEEEChHHHHHHHHcCCCCCCCcceEEecccccc
Q 011963 306 EPEFLVSTPERLLKLVSLKAIDVSGVSLLVVDRLDSL 342 (474)
Q Consensus 306 ~~~IlV~TP~rL~~ll~~~~~~l~~l~~lViDEad~l 342 (474)
+.+++-+.+++|..++..-. ...+++|||=.-.+
T Consensus 54 ~~~~~~~~~~~l~~~l~~l~---~~yD~viiD~~~~~ 87 (206)
T 4dzz_A 54 AFDVFTAASEKDVYGIRKDL---ADYDFAIVDGAGSL 87 (206)
T ss_dssp SSEEEECCSHHHHHTHHHHT---TTSSEEEEECCSSS
T ss_pred CCcEEecCcHHHHHHHHHhc---CCCCEEEEECCCCC
Confidence 35666666666666655411 23567888866544
No 469
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=29.30 E-value=46 Score=42.34 Aligned_cols=49 Identities=8% Similarity=0.144 Sum_probs=35.1
Q ss_pred hHHHHHHHHHhCCCCccccCCCchhhHHHHHH---HhcCCcEEEEcCCCcchhHHHHH
Q 011963 182 CLNAIENAMRHDGVEQDNPLFVNSWGIEFWKC---YSSAKDILETSGSSSTIVQIAWI 236 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~ptpi~~~~~Q~~~i~~---~l~g~dvl~~A~TG~SGKTlaf~ 236 (474)
+...+.+.+.++|+. |+|. |-..++.. +....-+++..||| ||||.+|-
T Consensus 873 l~~ai~~~~~~~~L~-~~~~----~v~KviQLye~~~vRhGvmlVGp~g-sGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQE----WVEKILQLHQILNINHGVMMVGPSG-GGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHH----HHHHHHHHHHHHTTCSEEEEECSSS-SSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHH----HHHHHHHHHHHHHheeeEEEECCCC-CCHHHHHH
Confidence 678888999999986 3332 23344433 34445899999999 99999885
No 470
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=29.21 E-value=3.1e+02 Score=24.49 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=25.5
Q ss_pred CCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 433 PLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 433 ~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
..+.-|||.+...|..+...|...|+.+
T Consensus 180 ~~~~ai~~~~d~~a~g~~~al~~~g~~v 207 (276)
T 3jy6_A 180 DQKTVAFALKERWLLEFFPNLIISGLID 207 (276)
T ss_dssp SSCEEEEESSHHHHHHHSHHHHHSSSCC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHcCCCC
Confidence 5689999999999999999999999875
No 471
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=29.02 E-value=2.4e+02 Score=25.74 Aligned_cols=83 Identities=11% Similarity=0.006 Sum_probs=46.8
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEecc----------------HHHHHHHHHHHHh
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS----------------QEKAAKVRSVCKP 278 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Pt----------------reLa~Qi~~~~~~ 278 (474)
+.|+-+||+..+||-|..+|-. +.. .|..++++.-. .+-..++...+..
T Consensus 9 l~~k~~lVTGas~gIG~aia~~------la~---------~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (286)
T 3uve_A 9 VEGKVAFVTGAARGQGRSHAVR------LAQ---------EGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKG 73 (286)
T ss_dssp TTTCEEEEESTTSHHHHHHHHH------HHH---------TTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHT
T ss_pred cCCCEEEEeCCCchHHHHHHHH------HHH---------CCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhh
Confidence 5678889988777566654432 333 25565555322 4444444444333
Q ss_pred cccCCcEEEEEecCCCHHHHHHHHh------cCCCcEEEEChH
Q 011963 279 LKAFGIHTVSLHPGAAIDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 279 l~~~~i~v~~~~gg~~~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
.+.++..+..+.........+- -+++|+||-..|
T Consensus 74 ---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg 113 (286)
T 3uve_A 74 ---HNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAG 113 (286)
T ss_dssp ---TTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred ---cCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence 3456666666665444433331 136899998766
No 472
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=28.97 E-value=25 Score=31.19 Aligned_cols=17 Identities=12% Similarity=-0.037 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCcchhHH
Q 011963 216 SAKDILETSGSSSTIVQI 233 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTl 233 (474)
.|+-++++++.| +|||.
T Consensus 15 ~G~gvli~G~SG-aGKSt 31 (181)
T 3tqf_A 15 DKMGVLITGEAN-IGKSE 31 (181)
T ss_dssp TTEEEEEEESSS-SSHHH
T ss_pred CCEEEEEEcCCC-CCHHH
Confidence 567899999999 99983
No 473
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=28.93 E-value=3.9e+02 Score=26.00 Aligned_cols=19 Identities=5% Similarity=-0.135 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCcchhHHHH
Q 011963 216 SAKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf 235 (474)
.|.=+.++.|+| +|||...
T Consensus 156 ~g~vi~lvG~nG-sGKTTll 174 (359)
T 2og2_A 156 KPAVIMIVGVNG-GGKTTSL 174 (359)
T ss_dssp SSEEEEEECCTT-SCHHHHH
T ss_pred CCeEEEEEcCCC-ChHHHHH
Confidence 455677889999 9998654
No 474
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2
Probab=28.75 E-value=2.2e+02 Score=26.15 Aligned_cols=86 Identities=10% Similarity=0.112 Sum_probs=49.4
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhc-c-cCCcEEEEEecC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPL-K-AFGIHTVSLHPG 292 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l-~-~~~i~v~~~~gg 292 (474)
+.|+-+||+..+||-|..+|- .+.. .+..++++.-..+-...+...+... . ..+.++..+.++
T Consensus 16 l~~k~vlVTGasggIG~~la~------~l~~---------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D 80 (303)
T 1yxm_A 16 LQGQVAIVTGGATGIGKAIVK------ELLE---------LGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCN 80 (303)
T ss_dssp TTTCEEEEETTTSHHHHHHHH------HHHH---------TTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECC
T ss_pred CCCCEEEEECCCcHHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecC
Confidence 567889999888766665443 2333 2556666665555444455544442 1 124456666667
Q ss_pred CCHHHHHHHHhc------CCCcEEEEChH
Q 011963 293 AAIDHQITGLRS------CEPEFLVSTPE 315 (474)
Q Consensus 293 ~~~~~q~~~l~~------~~~~IlV~TP~ 315 (474)
.........+-. +++|+||...|
T Consensus 81 ~~~~~~v~~~~~~~~~~~g~id~li~~Ag 109 (303)
T 1yxm_A 81 IRNEEEVNNLVKSTLDTFGKINFLVNNGG 109 (303)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 654444333321 36899998766
No 475
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=28.74 E-value=2.8e+02 Score=24.85 Aligned_cols=81 Identities=17% Similarity=0.090 Sum_probs=44.5
Q ss_pred CCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHH
Q 011963 217 AKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAID 296 (474)
Q Consensus 217 g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~ 296 (474)
++-+||+..+||-|..++- .+.. .+..++++.-..+-...+...+... +-++..+..+....
T Consensus 2 ~k~vlVTGas~gIG~~ia~------~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~ 63 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIAL------RLVK---------DGFAVAIADYNDATAKAVASEINQA---GGHAVAVKVDVSDR 63 (256)
T ss_dssp CCEEEEETTTSHHHHHHHH------HHHH---------TTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTTSH
T ss_pred CCEEEEECCCChHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEecCCCH
Confidence 4567888777756665443 2333 2556666666555544444444333 33455555665544
Q ss_pred HHHHHHhc------CCCcEEEEChH
Q 011963 297 HQITGLRS------CEPEFLVSTPE 315 (474)
Q Consensus 297 ~q~~~l~~------~~~~IlV~TP~ 315 (474)
.....+-. +++|+||-..|
T Consensus 64 ~~v~~~~~~~~~~~g~id~lv~nAg 88 (256)
T 1geg_A 64 DQVFAAVEQARKTLGGFDVIVNNAG 88 (256)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCC
Confidence 33333221 36899998765
No 476
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=28.70 E-value=3.7e+02 Score=25.24 Aligned_cols=19 Identities=5% Similarity=-0.135 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCcchhHHHH
Q 011963 216 SAKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf 235 (474)
.|.=+.+..|+| +|||...
T Consensus 99 ~g~vi~lvG~nG-sGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNG-GGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTT-SCHHHHH
T ss_pred CCcEEEEEcCCC-CCHHHHH
Confidence 455677889999 9998654
No 477
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=28.67 E-value=1.7e+02 Score=26.91 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=46.5
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||+..|||-|..++-. +.. .+-.++++.-+.+-...+...+.. .+.++..+.++..
T Consensus 42 l~~k~vlITGasggIG~~la~~------L~~---------~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dl~ 103 (285)
T 2c07_A 42 GENKVALVTGAGRGIGREIAKM------LAK---------SVSHVICISRTQKSCDSVVDEIKS---FGYESSGYAGDVS 103 (285)
T ss_dssp CSSCEEEEESTTSHHHHHHHHH------HTT---------TSSEEEEEESSHHHHHHHHHHHHT---TTCCEEEEECCTT
T ss_pred CCCCEEEEECCCcHHHHHHHHH------HHH---------cCCEEEEEcCCHHHHHHHHHHHHh---cCCceeEEECCCC
Confidence 4678899988887677765542 222 244555555444444444444333 2445555666655
Q ss_pred HHHHHHHHh------cCCCcEEEEChH
Q 011963 295 IDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
.......+- -+++|+||...|
T Consensus 104 d~~~v~~~~~~~~~~~~~id~li~~Ag 130 (285)
T 2c07_A 104 KKEEISEVINKILTEHKNVDILVNNAG 130 (285)
T ss_dssp CHHHHHHHHHHHHHHCSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 444433332 136899998766
No 478
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=28.52 E-value=28 Score=31.60 Aligned_cols=22 Identities=5% Similarity=-0.148 Sum_probs=16.1
Q ss_pred HHhcCCcEEEEcCCCcchhHHHH
Q 011963 213 CYSSAKDILETSGSSSTIVQIAW 235 (474)
Q Consensus 213 ~~l~g~dvl~~A~TG~SGKTlaf 235 (474)
++..|.=+++++|+| +|||..+
T Consensus 12 ~~~~G~ii~l~GpsG-sGKSTLl 33 (219)
T 1s96_A 12 HMAQGTLYIVSAPSG-AGKSSLI 33 (219)
T ss_dssp ---CCCEEEEECCTT-SCHHHHH
T ss_pred cCCCCcEEEEECCCC-CCHHHHH
Confidence 456788889999999 9998643
No 479
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=28.51 E-value=1.8e+02 Score=26.08 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=45.5
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||+..+||-|..+|- .+.. .+..++++.-..+-..+....+ +-++..+..+..
T Consensus 4 l~gk~vlVTGas~gIG~a~a~------~l~~---------~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~~Dv~ 62 (247)
T 3rwb_A 4 LAGKTALVTGAAQGIGKAIAA------RLAA---------DGATVIVSDINAEGAKAAAASI------GKKARAIAADIS 62 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHH------HHHH---------TTCEEEEECSCHHHHHHHHHHH------CTTEEECCCCTT
T ss_pred cCCCEEEEECCCCHHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHh------CCceEEEEcCCC
Confidence 467888888777656665443 2333 3567777766665554444333 334445555555
Q ss_pred HHHHHHHHh------cCCCcEEEEChH
Q 011963 295 IDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
.......+- -+++|+||-..|
T Consensus 63 ~~~~v~~~~~~~~~~~g~id~lv~nAg 89 (247)
T 3rwb_A 63 DPGSVKALFAEIQALTGGIDILVNNAS 89 (247)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence 433333221 136899998765
No 480
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=28.27 E-value=26 Score=32.12 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=13.8
Q ss_pred CcEEEEcCCCcchhHHH
Q 011963 218 KDILETSGSSSTIVQIA 234 (474)
Q Consensus 218 ~dvl~~A~TG~SGKTla 234 (474)
+.+++..|+| +|||..
T Consensus 46 ~~vll~G~~G-tGKT~l 61 (257)
T 1lv7_A 46 KGVLMVGPPG-TGKTLL 61 (257)
T ss_dssp CEEEEECCTT-SCHHHH
T ss_pred CeEEEECcCC-CCHHHH
Confidence 4689999999 999964
No 481
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...
Probab=28.23 E-value=2.6e+02 Score=25.56 Aligned_cols=83 Identities=16% Similarity=0.114 Sum_probs=47.0
Q ss_pred HhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 011963 214 YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293 (474)
Q Consensus 214 ~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~ 293 (474)
.+.|+-++|+..+||-|+-++-. +.. .|..++++.-+.+-...+...+.... +.++..+.++.
T Consensus 25 ~~~~k~vlITGasggIG~~la~~------l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl 87 (286)
T 1xu9_A 25 MLQGKKVIVTGASKGIGREMAYH------LAK---------MGAHVVVTARSKETLQKVVSHCLELG--AASAHYIAGTM 87 (286)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHHHT--CSEEEEEECCT
T ss_pred hcCCCEEEEeCCCcHHHHHHHHH------HHH---------CCCEEEEEECCHHHHHHHHHHHHHhC--CCceEEEeCCC
Confidence 36788899988877677765543 222 25566666666555555555444431 23455556665
Q ss_pred CHHHHHHHHh------cCCCcEEEEC
Q 011963 294 AIDHQITGLR------SCEPEFLVST 313 (474)
Q Consensus 294 ~~~~q~~~l~------~~~~~IlV~T 313 (474)
........+. -+++|+||-.
T Consensus 88 ~d~~~v~~~~~~~~~~~g~iD~li~n 113 (286)
T 1xu9_A 88 EDMTFAEQFVAQAGKLMGGLDMLILN 113 (286)
T ss_dssp TCHHHHHHHHHHHHHHHTSCSEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 5433332221 1368999965
No 482
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=28.23 E-value=1.6e+02 Score=27.11 Aligned_cols=83 Identities=18% Similarity=0.079 Sum_probs=46.7
Q ss_pred cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEe-ccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLV-SSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~-PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
.|+-+||+..+||-|+.+|-. +.. .|..++++. ...+-+.++...+... +.++..+..+..
T Consensus 28 ~~k~~lVTGas~GIG~aia~~------la~---------~G~~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~ 89 (280)
T 4da9_A 28 ARPVAIVTGGRRGIGLGIARA------LAA---------SGFDIAITGIGDAEGVAPVIAELSGL---GARVIFLRADLA 89 (280)
T ss_dssp CCCEEEEETTTSHHHHHHHHH------HHH---------TTCEEEEEESCCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred CCCEEEEecCCCHHHHHHHHH------HHH---------CCCeEEEEeCCCHHHHHHHHHHHHhc---CCcEEEEEecCC
Confidence 567788888777667655433 233 355666665 4555555555555443 445555555544
Q ss_pred HHHH----HHHHh--cCCCcEEEEChHH
Q 011963 295 IDHQ----ITGLR--SCEPEFLVSTPER 316 (474)
Q Consensus 295 ~~~q----~~~l~--~~~~~IlV~TP~r 316 (474)
.... ...+. -+++|+||-..|.
T Consensus 90 d~~~v~~~~~~~~~~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 90 DLSSHQATVDAVVAEFGRIDCLVNNAGI 117 (280)
T ss_dssp SGGGHHHHHHHHHHHHSCCCEEEEECC-
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 3222 22221 1369999988774
No 483
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=28.11 E-value=47 Score=32.06 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=11.7
Q ss_pred hHHHHHHHHHhCCCCccc
Q 011963 182 CLNAIENAMRHDGVEQDN 199 (474)
Q Consensus 182 l~~~i~~~l~~~g~~~pt 199 (474)
+--.+.+.+...|+.+..
T Consensus 15 ~i~~~R~~ly~~~~~k~~ 32 (315)
T 4ehx_A 15 KIINFRNTLYDKGFLKIK 32 (315)
T ss_dssp HHHHHHHHHHHTTCSCCB
T ss_pred HHHHHHHHHHhccccccc
Confidence 344566777788876554
No 484
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=28.07 E-value=1.8e+02 Score=25.83 Aligned_cols=83 Identities=14% Similarity=0.140 Sum_probs=45.0
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-++|...|||-|..++- .+.. .+..++++.-..+-...+...+... +-++..+.++..
T Consensus 9 ~~~~~vlVtGasggiG~~la~------~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~ 70 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAI------TFAT---------AGASVVVSDINADAANHVVDEIQQL---GGQAFACRCDIT 70 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHH------HHHT---------TTCEEEEEESCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred CCCCEEEEECCccHHHHHHHH------HHHH---------CCCEEEEEcCCHHHHHHHHHHHHHh---CCceEEEEcCCC
Confidence 467788888777756665443 3333 2556666666555444444444333 334445556655
Q ss_pred HHHHHHHHhc------CCCcEEEEChH
Q 011963 295 IDHQITGLRS------CEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~~------~~~~IlV~TP~ 315 (474)
.......+-. +++|+||-..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~d~vi~~Ag 97 (255)
T 1fmc_A 71 SEQELSALADFAISKLGKVDILVNNAG 97 (255)
T ss_dssp CHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3333332211 36899997755
No 485
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=27.99 E-value=24 Score=30.28 Aligned_cols=17 Identities=12% Similarity=-0.048 Sum_probs=13.7
Q ss_pred cCCcEEEEcCCCcchhHH
Q 011963 216 SAKDILETSGSSSTIVQI 233 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTl 233 (474)
.|.-++++.+.| ||||.
T Consensus 2 ~~~~I~i~G~~G-sGKsT 18 (192)
T 1kht_A 2 KNKVVVVTGVPG-VGSTT 18 (192)
T ss_dssp -CCEEEEECCTT-SCHHH
T ss_pred CCeEEEEECCCC-CCHHH
Confidence 356688999999 99985
No 486
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=27.97 E-value=3.3e+02 Score=24.40 Aligned_cols=39 Identities=5% Similarity=0.044 Sum_probs=30.3
Q ss_pred HHHHHHhhccCCCCCC-cEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 419 QVLDHAYGDHFHSEPL-KVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 419 ~lL~~ll~~~~~~~~~-k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
..+..++..+. .. +.-|||.+...|..+...|...|+.+
T Consensus 188 ~~~~~~l~~~~---~~~~~ai~~~~d~~a~g~~~al~~~g~~v 227 (298)
T 3tb6_A 188 EKVKATLEKNS---KHMPTAILCYNDEIALKVIDMLREMDLKV 227 (298)
T ss_dssp HHHHHHHHHTT---TSCCSEEECSSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhcCC---CCCCeEEEEeCcHHHHHHHHHHHHcCCCC
Confidence 45566665543 22 78899999999999999999999874
No 487
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=27.89 E-value=2e+02 Score=27.13 Aligned_cols=85 Identities=9% Similarity=0.062 Sum_probs=50.7
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||+..+||-|..+|- .+.. .|..++++.-+.+-..++...+... ..+.++..+..+..
T Consensus 6 l~~k~vlVTGas~gIG~~la~------~l~~---------~G~~Vv~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dl~ 69 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVR------QLLN---------QGCKVAIADIRQDSIDKALATLEAE-GSGPEVMGVQLDVA 69 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHH------HHHH---------TTCEEEEEESCHHHHHHHHHHHHHH-TCGGGEEEEECCTT
T ss_pred CCCCEEEEcCCchHHHHHHHH------HHHH---------CCCEEEEEECCHHHHHHHHHHHHhc-CCCCeEEEEECCCC
Confidence 357788898877766765443 2333 3567777777776666666655543 12235555666655
Q ss_pred HHHHHHHHhc------CCCcEEEEChH
Q 011963 295 IDHQITGLRS------CEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~~------~~~~IlV~TP~ 315 (474)
....+..+-. +++|+||-+.|
T Consensus 70 ~~~~v~~~~~~~~~~~g~id~lv~nAg 96 (319)
T 3ioy_A 70 SREGFKMAADEVEARFGPVSILCNNAG 96 (319)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 4443333321 36899998876
No 488
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=27.86 E-value=32 Score=29.05 Aligned_cols=18 Identities=6% Similarity=-0.018 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCcchhHHH
Q 011963 216 SAKDILETSGSSSTIVQIA 234 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTla 234 (474)
.+.-++++.|.| ||||..
T Consensus 3 ~~~~i~l~G~~G-sGKSTl 20 (173)
T 1kag_A 3 EKRNIFLVGPMG-AGKSTI 20 (173)
T ss_dssp CCCCEEEECCTT-SCHHHH
T ss_pred CCCeEEEECCCC-CCHHHH
Confidence 356789999999 999853
No 489
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=27.84 E-value=31 Score=32.33 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=16.6
Q ss_pred ceEEeccccccCC--hhHHHHHHhh
Q 011963 332 SLLVVDRLDSLSK--GDTLSLIRQS 354 (474)
Q Consensus 332 ~~lViDEad~ll~--~~~l~~Il~~ 354 (474)
.+|+|||+|.+.. ...+..++..
T Consensus 121 ~vl~lDEi~~l~~~~~~~Ll~~le~ 145 (311)
T 4fcw_A 121 SVILFDAIEKAHPDVFNILLQMLDD 145 (311)
T ss_dssp EEEEEETGGGSCHHHHHHHHHHHHH
T ss_pred eEEEEeChhhcCHHHHHHHHHHHhc
Confidence 4899999999875 5555555544
No 490
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=27.82 E-value=3.2e+02 Score=24.22 Aligned_cols=38 Identities=3% Similarity=-0.100 Sum_probs=30.0
Q ss_pred HHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCcc
Q 011963 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYSI 460 (474)
Q Consensus 419 ~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~v 460 (474)
..+..++..+ ..+.-|||.+...|..+...|...|+.+
T Consensus 170 ~~~~~~l~~~----~~~~ai~~~~d~~a~g~~~al~~~g~~v 207 (275)
T 3d8u_A 170 EGLAKLLLRD----SSLNALVCSHEEIAIGALFECHRRVLKV 207 (275)
T ss_dssp HHHHHHHTTC----TTCCEEEESSHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhCC----CCCCEEEEcCcHHHHHHHHHHHHcCCCC
Confidence 5566666543 3577899999999999999999999864
No 491
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=27.77 E-value=1.7e+02 Score=26.91 Aligned_cols=86 Identities=10% Similarity=0.042 Sum_probs=47.6
Q ss_pred HhcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCC
Q 011963 214 YSSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGA 293 (474)
Q Consensus 214 ~l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~ 293 (474)
.+.++-+||+..+||-|..+|-. +.. .|..++++.-+.+-..+....+.... +-++..+..+.
T Consensus 9 ~~~~k~vlITGas~GIG~~~a~~------L~~---------~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dl 71 (311)
T 3o26_A 9 VTKRRCAVVTGGNKGIGFEICKQ------LSS---------NGIMVVLTCRDVTKGHEAVEKLKNSN--HENVVFHQLDV 71 (311)
T ss_dssp ---CCEEEESSCSSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHTTT--CCSEEEEECCT
T ss_pred cCCCcEEEEecCCchHHHHHHHH------HHH---------CCCEEEEEeCCHHHHHHHHHHHHhcC--CCceEEEEccC
Confidence 46788888887777566654433 333 35577777777776666666555442 22344444444
Q ss_pred CHH-HHHH----HHh--cCCCcEEEEChHH
Q 011963 294 AID-HQIT----GLR--SCEPEFLVSTPER 316 (474)
Q Consensus 294 ~~~-~q~~----~l~--~~~~~IlV~TP~r 316 (474)
... ..+. .+. -+++|+||...|-
T Consensus 72 ~~~~~~v~~~~~~~~~~~g~iD~lv~nAg~ 101 (311)
T 3o26_A 72 TDPIATMSSLADFIKTHFGKLDILVNNAGV 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred CCcHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 332 2222 221 1379999988763
No 492
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Probab=27.47 E-value=2.9e+02 Score=25.00 Aligned_cols=85 Identities=15% Similarity=0.046 Sum_probs=50.4
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||+..+||-|+.+|- .+.. .|..++++.-+.+-..++...+... ..+.++..+..+..
T Consensus 6 l~~k~~lVTGas~GIG~aia~------~l~~---------~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dv~ 69 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVE------LLLE---------AGAAVAFCARDGERLRAAESALRQR-FPGARLFASVCDVL 69 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHH------HHHH---------TTCEEEEEESCHHHHHHHHHHHHHH-STTCCEEEEECCTT
T ss_pred cCCCEEEEeCCCChHHHHHHH------HHHH---------CCCEEEEEeCCHHHHHHHHHHHHHh-cCCceEEEEeCCCC
Confidence 467888888777656665443 2333 3667777777776666666665542 11334555666655
Q ss_pred HHHHHHHHh------cCCCcEEEEChH
Q 011963 295 IDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
.......+- -+++|+||-..|
T Consensus 70 ~~~~v~~~~~~~~~~~g~id~lvnnAg 96 (265)
T 3lf2_A 70 DALQVRAFAEACERTLGCASILVNNAG 96 (265)
T ss_dssp CHHHHHHHHHHHHHHHCSCSEEEECCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 444333321 136899998876
No 493
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=27.29 E-value=2.9e+02 Score=25.11 Aligned_cols=83 Identities=11% Similarity=0.042 Sum_probs=46.4
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEecc------------HHHHHHHHHHHHhcccC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSS------------QEKAAKVRSVCKPLKAF 282 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~Pt------------reLa~Qi~~~~~~l~~~ 282 (474)
+.|+-+||+..+||-|..+|-. +.. .|..++++.-. .+-..+....+.. .
T Consensus 8 l~~k~~lVTGas~gIG~a~a~~------l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 69 (281)
T 3s55_A 8 FEGKTALITGGARGMGRSHAVA------LAE---------AGADIAICDRCENSDVVGYPLATADDLAETVALVEK---T 69 (281)
T ss_dssp TTTCEEEEETTTSHHHHHHHHH------HHH---------TTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHH---T
T ss_pred cCCCEEEEeCCCchHHHHHHHH------HHH---------CCCeEEEEeCCccccccccccccHHHHHHHHHHHHh---c
Confidence 5678899988777666655432 333 25565555432 3333334443333 3
Q ss_pred CcEEEEEecCCCHHHHHHHHh------cCCCcEEEEChH
Q 011963 283 GIHTVSLHPGAAIDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 283 ~i~v~~~~gg~~~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
+-++..+..+.........+- -+++|+||-..|
T Consensus 70 ~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg 108 (281)
T 3s55_A 70 GRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAG 108 (281)
T ss_dssp TCCEEEEECCTTCHHHHHHHHHHHHHHHTCCCEEEECCC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 455666666665444333322 136999998766
No 494
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=27.21 E-value=1.1e+02 Score=29.37 Aligned_cols=77 Identities=9% Similarity=0.014 Sum_probs=42.8
Q ss_pred cCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCc-EEEEEecc---HHHHHHHHHHHHhcccCCcEEEEEec
Q 011963 216 SAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGP-FLLFLVSS---QEKAAKVRSVCKPLKAFGIHTVSLHP 291 (474)
Q Consensus 216 ~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~-~alil~Pt---reLa~Qi~~~~~~l~~~~i~v~~~~g 291 (474)
.|+.+++..--| .|+..++.|-.. +. .+.|+.-| .+-+.++.+.+... .+..+..+.
T Consensus 153 ~gk~~lVlGaGG-~g~aia~~L~~~---------------Ga~~V~i~nR~~~~~~~a~~la~~~~~~--~~~~~~~~~- 213 (315)
T 3tnl_A 153 IGKKMTICGAGG-AATAICIQAALD---------------GVKEISIFNRKDDFYANAEKTVEKINSK--TDCKAQLFD- 213 (315)
T ss_dssp TTSEEEEECCSH-HHHHHHHHHHHT---------------TCSEEEEEECSSTTHHHHHHHHHHHHHH--SSCEEEEEE-
T ss_pred cCCEEEEECCCh-HHHHHHHHHHHC---------------CCCEEEEEECCCchHHHHHHHHHHhhhh--cCCceEEec-
Confidence 567777776545 888877755332 55 56667777 77777766665543 233332221
Q ss_pred CCCHHHHHHHHhcCCCcEEEEC
Q 011963 292 GAAIDHQITGLRSCEPEFLVST 313 (474)
Q Consensus 292 g~~~~~q~~~l~~~~~~IlV~T 313 (474)
-.........+. .+||||.|
T Consensus 214 ~~~~~~l~~~l~--~aDiIINa 233 (315)
T 3tnl_A 214 IEDHEQLRKEIA--ESVIFTNA 233 (315)
T ss_dssp TTCHHHHHHHHH--TCSEEEEC
T ss_pred cchHHHHHhhhc--CCCEEEEC
Confidence 111222122233 58999854
No 495
>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=27.17 E-value=2e+02 Score=26.78 Aligned_cols=86 Identities=10% Similarity=0.018 Sum_probs=47.8
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||...+||-|+.+|-. +.. .|..++++.-..+-...+...+.......-++..+.++..
T Consensus 24 l~~k~vlVTGas~gIG~aia~~------L~~---------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~ 88 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVI------FAK---------EGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVT 88 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHH------HHH---------CCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCC
Confidence 4678888887777667655433 333 2556677766665555554444433110014555566655
Q ss_pred HHHHHHHHh------cCCCcEEEEChH
Q 011963 295 IDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
.......+- -+++|+||...|
T Consensus 89 d~~~v~~~~~~~~~~~g~iD~lvnnAG 115 (297)
T 1xhl_A 89 EASGQDDIINTTLAKFGKIDILVNNAG 115 (297)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 443333221 136899998765
No 496
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=26.98 E-value=2.1e+02 Score=26.10 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=46.6
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||+..+||-|..+|-. +.. .|-.++++.-..+-+.++.. .+ +-++..+.++..
T Consensus 25 l~gk~vlVTGas~gIG~aia~~------la~---------~G~~V~~~~r~~~~~~~~~~---~~---~~~~~~~~~Dv~ 83 (266)
T 3grp_A 25 LTGRKALVTGATGGIGEAIARC------FHA---------QGAIVGLHGTREDKLKEIAA---DL---GKDVFVFSANLS 83 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHH---HH---CSSEEEEECCTT
T ss_pred cCCCEEEEeCCCcHHHHHHHHH------HHH---------CCCEEEEEeCCHHHHHHHHH---Hh---CCceEEEEeecC
Confidence 4678888887777566654432 333 35566666666554444332 22 345556666665
Q ss_pred HHHHHHHHhc------CCCcEEEEChHH
Q 011963 295 IDHQITGLRS------CEPEFLVSTPER 316 (474)
Q Consensus 295 ~~~q~~~l~~------~~~~IlV~TP~r 316 (474)
.......+-. +++|+||-..|.
T Consensus 84 d~~~v~~~~~~~~~~~g~iD~lvnnAg~ 111 (266)
T 3grp_A 84 DRKSIKQLAEVAEREMEGIDILVNNAGI 111 (266)
T ss_dssp SHHHHHHHHHHHHHHHTSCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4444433321 368999987763
No 497
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=26.96 E-value=3.8e+02 Score=24.74 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=28.5
Q ss_pred HHHHHHhhccCCCCCCcEEEEEccchhHHHHHHHHhhCCCc
Q 011963 419 QVLDHAYGDHFHSEPLKVLYIVGKDSKFQNLVSTLKCKGYS 459 (474)
Q Consensus 419 ~lL~~ll~~~~~~~~~k~LVF~~s~~~a~~l~~~L~~~gi~ 459 (474)
..+..++..+ +.+.-|||.+...|..+...|+..|++
T Consensus 177 ~~~~~ll~~~----~~~~aI~~~nd~~A~g~~~al~~~Gip 213 (325)
T 2x7x_A 177 IEMDSMLRRH----PKIDAVYAHNDRIAPGAYQAAKMAGRE 213 (325)
T ss_dssp HHHHHHHHHC----SCCCEEEESSTTHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHhC----CCCCEEEECCCchHHHHHHHHHHcCCC
Confidence 4555565543 346789999999999999999999974
No 498
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=26.94 E-value=33 Score=29.90 Aligned_cols=19 Identities=11% Similarity=-0.122 Sum_probs=15.3
Q ss_pred hcCCcEEEEcCCCcchhHHH
Q 011963 215 SSAKDILETSGSSSTIVQIA 234 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTla 234 (474)
..|.-++++.|+| ||||..
T Consensus 4 ~~g~~i~l~G~~G-sGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSG-VGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTT-SCHHHH
T ss_pred CCCCEEEEECCCC-CCHHHH
Confidence 4567788999999 999853
No 499
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=26.89 E-value=2.1e+02 Score=26.19 Aligned_cols=86 Identities=14% Similarity=0.059 Sum_probs=46.8
Q ss_pred hcCCcEEEEcCCCcchhHHHHHHHHHHHHHHhhhhcCCCCCCcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCC
Q 011963 215 SSAKDILETSGSSSTIVQIAWIVATAADSIARKEKEGFSFTGPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAA 294 (474)
Q Consensus 215 l~g~dvl~~A~TG~SGKTlaf~lp~l~~l~~~~~~~~~~~~~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~ 294 (474)
+.|+-+||...+||-|+.+|-. +.. .+-.++++.-+.+-..++...+......+-++..+.++..
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~------l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 68 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAIL------FAQ---------EGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVT 68 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHH------HHH---------TTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTT
T ss_pred CCCCEEEEECCCChHHHHHHHH------HHH---------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCC
Confidence 4677788887777667655433 333 2556666666555444444444332110114555666655
Q ss_pred HHHHHHHHh------cCCCcEEEEChH
Q 011963 295 IDHQITGLR------SCEPEFLVSTPE 315 (474)
Q Consensus 295 ~~~q~~~l~------~~~~~IlV~TP~ 315 (474)
.......+- -+++|+||-..|
T Consensus 69 ~~~~v~~~~~~~~~~~g~iD~lv~nAg 95 (280)
T 1xkq_A 69 TEDGQDQIINSTLKQFGKIDVLVNNAG 95 (280)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 444333221 136899998766
No 500
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=26.85 E-value=1.1e+02 Score=33.41 Aligned_cols=65 Identities=18% Similarity=0.140 Sum_probs=42.8
Q ss_pred CcEEEEEeccHHHHHHHHHHHHhcccCCcEEEEEecCCCHHHHHHHHhc-CCCcEEEEChHHHHHHHHcCCCCCC
Q 011963 256 GPFLLFLVSSQEKAAKVRSVCKPLKAFGIHTVSLHPGAAIDHQITGLRS-CEPEFLVSTPERLLKLVSLKAIDVS 329 (474)
Q Consensus 256 ~~~alil~PtreLa~Qi~~~~~~l~~~~i~v~~~~gg~~~~~q~~~l~~-~~~~IlV~TP~rL~~ll~~~~~~l~ 329 (474)
+..+||.+.|++-+..+...+... |+.+.+++|+.......-.... ....|+|||. +..+++|+.
T Consensus 474 gqpVLVFt~S~e~sE~Ls~~L~~~---Gi~~~vLhgkq~~rE~~ii~~ag~~g~VtVATd------mAgRGtDI~ 539 (822)
T 3jux_A 474 GQPVLVGTTSIEKSELLSSMLKKK---GIPHQVLNAKYHEKEAEIVAKAGQKGMVTIATN------MAGRGTDIK 539 (822)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTT---TCCCEEECSCHHHHHHHHHHHHHSTTCEEEEET------TTTTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHC---CCCEEEeeCCchHHHHHHHHhCCCCCeEEEEcc------hhhCCcCcc
Confidence 457999999999999888876654 8889999998433221111111 1347999996 334555554
Done!