Query 011964
Match_columns 474
No_of_seqs 596 out of 3312
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 07:10:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011964.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011964hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 2.9E-73 6.4E-78 589.2 16.5 323 134-466 1-328 (506)
2 COG2226 UbiE Methylase involve 99.8 1.8E-18 3.9E-23 168.4 13.4 120 232-361 38-162 (238)
3 PF01209 Ubie_methyltran: ubiE 99.7 1.1E-17 2.3E-22 163.4 11.2 106 254-360 48-158 (233)
4 KOG4300 Predicted methyltransf 99.7 2.6E-18 5.7E-23 160.9 5.8 145 254-425 77-228 (252)
5 PLN02233 ubiquinone biosynthes 99.7 1.1E-16 2.3E-21 158.9 15.8 106 254-360 74-187 (261)
6 PF08241 Methyltransf_11: Meth 99.7 8.8E-17 1.9E-21 132.2 9.1 93 258-353 1-95 (95)
7 PRK10258 biotin biosynthesis p 99.7 3.2E-16 6.9E-21 153.9 13.1 134 219-360 12-145 (251)
8 PTZ00098 phosphoethanolamine N 99.6 2.9E-14 6.4E-19 141.6 15.0 156 234-400 41-210 (263)
9 KOG1540 Ubiquinone biosynthesi 99.6 1.8E-14 4E-19 139.2 12.6 108 250-358 97-217 (296)
10 PF13489 Methyltransf_23: Meth 99.6 3.2E-14 6.9E-19 128.6 13.5 127 254-389 23-160 (161)
11 PLN02396 hexaprenyldihydroxybe 99.6 9E-14 2E-18 141.8 18.0 103 253-359 131-239 (322)
12 PLN02244 tocopherol O-methyltr 99.6 3.5E-14 7.7E-19 146.0 13.5 103 253-358 118-226 (340)
13 TIGR02752 MenG_heptapren 2-hep 99.5 2E-13 4.4E-18 132.1 17.5 104 255-359 47-155 (231)
14 PRK14103 trans-aconitate 2-met 99.5 3.7E-14 8.1E-19 139.8 12.0 99 254-357 30-128 (255)
15 PLN02490 MPBQ/MSBQ methyltrans 99.5 1.6E-13 3.4E-18 140.7 15.8 142 254-399 114-263 (340)
16 COG2227 UbiG 2-polyprenyl-3-me 99.5 1.9E-14 4.1E-19 138.8 8.3 104 254-361 60-167 (243)
17 TIGR00740 methyltransferase, p 99.5 2.9E-13 6.3E-18 132.1 16.7 104 254-359 54-165 (239)
18 PRK05785 hypothetical protein; 99.5 5.6E-14 1.2E-18 136.6 11.4 89 254-348 52-140 (226)
19 PRK11088 rrmA 23S rRNA methylt 99.5 1.1E-13 2.4E-18 137.9 13.4 99 254-360 86-186 (272)
20 TIGR02072 BioC biotin biosynth 99.5 1E-13 2.2E-18 133.4 12.8 105 254-360 35-140 (240)
21 PRK11207 tellurite resistance 99.5 3.1E-13 6.6E-18 128.6 13.6 97 255-355 32-134 (197)
22 PRK08317 hypothetical protein; 99.5 1.1E-12 2.4E-17 125.9 17.2 117 233-358 7-127 (241)
23 PRK01683 trans-aconitate 2-met 99.5 3.1E-13 6.8E-18 133.1 13.5 101 254-357 32-132 (258)
24 TIGR00477 tehB tellurite resis 99.5 5.2E-13 1.1E-17 126.8 14.2 140 255-400 32-177 (195)
25 PLN02336 phosphoethanolamine N 99.5 1.1E-12 2.5E-17 140.4 17.5 103 254-359 267-373 (475)
26 PRK15451 tRNA cmo(5)U34 methyl 99.5 7.4E-13 1.6E-17 130.2 14.6 104 254-359 57-168 (247)
27 PF13847 Methyltransf_31: Meth 99.5 3.1E-13 6.7E-18 122.8 10.7 103 253-357 3-112 (152)
28 PF12847 Methyltransf_18: Meth 99.5 3.4E-13 7.4E-18 115.2 10.2 100 255-356 3-112 (112)
29 PRK15068 tRNA mo(5)U34 methylt 99.5 9.3E-13 2E-17 134.6 14.9 100 254-357 123-228 (322)
30 PRK11036 putative S-adenosyl-L 99.5 4.2E-13 9E-18 132.4 11.9 103 253-359 44-153 (255)
31 PRK11873 arsM arsenite S-adeno 99.4 2.1E-12 4.5E-17 128.4 15.4 104 254-358 78-186 (272)
32 TIGR00452 methyltransferase, p 99.4 1.6E-12 3.5E-17 132.1 13.9 132 254-389 122-270 (314)
33 PF13649 Methyltransf_25: Meth 99.4 3.1E-13 6.8E-18 114.3 6.5 93 257-349 1-101 (101)
34 PRK12335 tellurite resistance 99.4 3.5E-12 7.5E-17 128.2 13.9 98 255-356 122-224 (287)
35 COG4106 Tam Trans-aconitate me 99.4 2.4E-12 5.1E-17 122.0 10.5 184 254-458 31-215 (257)
36 PRK00107 gidB 16S rRNA methylt 99.4 7.5E-12 1.6E-16 118.4 13.9 118 254-391 46-168 (187)
37 TIGR03587 Pse_Me-ase pseudamin 99.4 7.4E-12 1.6E-16 120.0 12.8 99 254-356 44-143 (204)
38 PRK06922 hypothetical protein; 99.4 3E-12 6.5E-17 139.4 11.1 104 254-358 419-540 (677)
39 PF08242 Methyltransf_12: Meth 99.4 3.1E-13 6.7E-18 113.6 2.7 92 258-351 1-99 (99)
40 smart00828 PKS_MT Methyltransf 99.3 9E-12 1.9E-16 120.0 12.1 134 256-392 2-144 (224)
41 PRK00216 ubiE ubiquinone/menaq 99.3 6.1E-11 1.3E-15 114.3 17.7 103 255-358 53-161 (239)
42 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 4.1E-11 8.9E-16 114.3 16.3 104 254-358 40-146 (223)
43 smart00138 MeTrc Methyltransfe 99.3 8E-12 1.7E-16 124.3 11.4 102 254-355 100-242 (264)
44 PRK11705 cyclopropane fatty ac 99.3 1.5E-11 3.3E-16 128.5 12.2 99 255-358 169-270 (383)
45 PF02353 CMAS: Mycolic acid cy 99.3 1.5E-11 3.4E-16 122.8 10.9 112 234-358 51-169 (273)
46 PRK06202 hypothetical protein; 99.3 1.1E-10 2.4E-15 113.4 16.7 105 253-359 60-170 (232)
47 PRK00121 trmB tRNA (guanine-N( 99.3 1.4E-11 3E-16 117.8 9.7 101 254-356 41-157 (202)
48 KOG1270 Methyltransferases [Co 99.3 5.3E-12 1.1E-16 122.9 6.8 99 254-359 90-199 (282)
49 PF03848 TehB: Tellurite resis 99.3 7.7E-11 1.7E-15 111.7 14.0 100 254-357 31-135 (192)
50 TIGR03840 TMPT_Se_Te thiopurin 99.3 7.4E-11 1.6E-15 113.9 13.3 100 255-357 36-154 (213)
51 PF07021 MetW: Methionine bios 99.3 2.4E-11 5.2E-16 114.2 9.6 98 254-358 14-112 (193)
52 TIGR00537 hemK_rel_arch HemK-r 99.2 1.9E-10 4.2E-15 107.4 15.7 118 255-389 21-162 (179)
53 PF05401 NodS: Nodulation prot 99.2 6.3E-11 1.4E-15 111.7 12.3 99 254-356 44-147 (201)
54 PLN02336 phosphoethanolamine N 99.2 5.3E-11 1.2E-15 127.5 12.2 102 255-359 39-146 (475)
55 KOG1541 Predicted protein carb 99.2 8.6E-11 1.9E-15 111.7 12.0 118 231-358 34-163 (270)
56 TIGR00138 gidB 16S rRNA methyl 99.2 2E-10 4.3E-15 108.1 14.5 96 254-356 43-143 (181)
57 TIGR02469 CbiT precorrin-6Y C5 99.2 2.4E-10 5.2E-15 98.8 13.0 96 255-355 21-122 (124)
58 COG2230 Cfa Cyclopropane fatty 99.2 1.1E-10 2.4E-15 116.2 11.8 117 231-360 58-181 (283)
59 TIGR02021 BchM-ChlM magnesium 99.2 1.9E-10 4E-15 110.8 12.7 95 254-354 56-157 (219)
60 PRK11188 rrmJ 23S rRNA methylt 99.2 1.2E-10 2.6E-15 112.0 11.1 98 254-358 52-168 (209)
61 KOG3010 Methyltransferase [Gen 99.2 5.9E-11 1.3E-15 114.4 8.7 124 220-354 5-136 (261)
62 TIGR00091 tRNA (guanine-N(7)-) 99.2 1.1E-10 2.4E-15 110.8 9.6 101 254-356 17-133 (194)
63 TIGR02716 C20_methyl_CrtF C-20 99.2 6E-10 1.3E-14 112.8 15.5 102 254-359 150-258 (306)
64 PRK13944 protein-L-isoaspartat 99.2 3E-10 6.5E-15 108.7 12.4 94 255-355 74-173 (205)
65 PF08003 Methyltransf_9: Prote 99.1 3.1E-10 6.7E-15 113.4 12.0 103 253-359 115-223 (315)
66 TIGR00406 prmA ribosomal prote 99.1 7.3E-10 1.6E-14 111.6 14.6 98 254-357 160-261 (288)
67 PRK13255 thiopurine S-methyltr 99.1 6.6E-10 1.4E-14 107.6 13.1 98 255-355 39-155 (218)
68 PRK08287 cobalt-precorrin-6Y C 99.1 1.4E-09 3E-14 102.3 14.9 116 255-389 33-153 (187)
69 PF05175 MTS: Methyltransferas 99.1 4.3E-10 9.3E-15 104.5 11.3 100 255-356 33-141 (170)
70 TIGR01983 UbiG ubiquinone bios 99.1 1.2E-09 2.6E-14 104.9 14.8 101 254-358 46-152 (224)
71 COG4976 Predicted methyltransf 99.1 9.3E-11 2E-15 112.1 5.8 134 254-391 126-264 (287)
72 PRK05134 bifunctional 3-demeth 99.1 6.8E-10 1.5E-14 107.6 12.1 101 254-358 49-154 (233)
73 PRK04266 fibrillarin; Provisio 99.1 1.3E-09 2.9E-14 106.1 13.7 130 255-392 74-210 (226)
74 PRK13942 protein-L-isoaspartat 99.1 8.5E-10 1.8E-14 106.2 12.1 109 232-355 63-176 (212)
75 PRK14967 putative methyltransf 99.1 2.5E-09 5.5E-14 103.5 15.3 100 255-357 38-161 (223)
76 PLN02585 magnesium protoporphy 99.1 2.7E-09 5.8E-14 108.8 16.2 93 254-353 145-248 (315)
77 PLN03075 nicotianamine synthas 99.1 9.9E-10 2.2E-14 110.4 12.8 102 253-355 123-233 (296)
78 PRK09489 rsmC 16S ribosomal RN 99.1 5.2E-10 1.1E-14 115.3 11.0 100 255-357 198-305 (342)
79 PF03141 Methyltransf_29: Puta 99.1 3E-10 6.6E-15 119.7 9.1 126 253-393 365-492 (506)
80 PRK00517 prmA ribosomal protei 99.1 2.5E-09 5.4E-14 105.5 14.9 112 254-389 120-235 (250)
81 PRK15001 SAM-dependent 23S rib 99.1 1E-09 2.3E-14 114.2 12.6 127 219-355 200-340 (378)
82 TIGR02081 metW methionine bios 99.1 9.2E-10 2E-14 104.2 10.8 94 255-356 15-110 (194)
83 PRK14121 tRNA (guanine-N(7)-)- 99.1 1.2E-09 2.5E-14 113.8 12.1 101 254-356 123-236 (390)
84 TIGR00080 pimt protein-L-isoas 99.1 1.3E-09 2.8E-14 104.9 11.7 107 234-355 66-177 (215)
85 PF13659 Methyltransf_26: Meth 99.0 6.5E-10 1.4E-14 95.7 8.1 100 255-356 2-116 (117)
86 PTZ00146 fibrillarin; Provisio 99.0 4.1E-09 9E-14 105.7 14.9 154 231-392 111-271 (293)
87 PRK00377 cbiT cobalt-precorrin 99.0 4E-09 8.7E-14 100.2 14.2 117 254-386 41-164 (198)
88 PLN02232 ubiquinone biosynthes 99.0 7.7E-10 1.7E-14 101.9 8.7 77 282-359 1-85 (160)
89 PRK14968 putative methyltransf 99.0 9.8E-09 2.1E-13 95.5 16.1 119 255-389 25-170 (188)
90 TIGR01177 conserved hypothetic 99.0 5.7E-09 1.2E-13 107.0 15.2 100 255-357 184-296 (329)
91 TIGR03438 probable methyltrans 99.0 3.3E-09 7.2E-14 107.5 12.4 105 255-359 65-181 (301)
92 COG2813 RsmC 16S RNA G1207 met 99.0 2.8E-09 6E-14 106.7 11.2 131 216-356 127-267 (300)
93 PRK07580 Mg-protoporphyrin IX 99.0 4.5E-09 9.7E-14 101.3 12.2 93 254-352 64-163 (230)
94 cd02440 AdoMet_MTases S-adenos 99.0 5.6E-09 1.2E-13 85.0 10.3 97 256-354 1-103 (107)
95 KOG2361 Predicted methyltransf 99.0 3.4E-09 7.3E-14 102.3 10.1 130 226-361 50-189 (264)
96 TIGR03534 RF_mod_PrmC protein- 98.9 1.7E-08 3.7E-13 98.5 15.1 120 255-389 89-238 (251)
97 COG2264 PrmA Ribosomal protein 98.9 6.3E-09 1.4E-13 104.5 11.5 119 253-389 162-285 (300)
98 PF06325 PrmA: Ribosomal prote 98.9 7E-09 1.5E-13 104.7 11.8 116 254-390 162-281 (295)
99 TIGR00438 rrmJ cell division p 98.9 2E-08 4.3E-13 94.6 13.9 97 254-356 33-147 (188)
100 KOG2940 Predicted methyltransf 98.9 5.3E-09 1.2E-13 100.1 8.2 136 254-392 73-227 (325)
101 PRK07402 precorrin-6B methylas 98.9 2.2E-08 4.8E-13 94.9 12.5 97 255-357 42-144 (196)
102 PRK13256 thiopurine S-methyltr 98.9 2.8E-08 6.2E-13 96.6 12.8 101 254-357 44-165 (226)
103 TIGR03533 L3_gln_methyl protei 98.8 4.2E-08 9.2E-13 98.7 14.2 101 254-356 122-252 (284)
104 PRK00312 pcm protein-L-isoaspa 98.8 2.8E-08 6E-13 95.3 12.4 92 255-356 80-176 (212)
105 COG4123 Predicted O-methyltran 98.8 3.8E-08 8.2E-13 96.6 12.9 122 254-389 45-191 (248)
106 KOG1271 Methyltransferases [Ge 98.8 1.9E-08 4.1E-13 93.4 9.9 104 254-358 68-184 (227)
107 PF05148 Methyltransf_8: Hypot 98.8 3.2E-08 6.9E-13 94.2 11.7 113 254-392 73-185 (219)
108 PRK10901 16S rRNA methyltransf 98.8 3.5E-08 7.6E-13 104.7 12.5 105 254-359 245-376 (427)
109 TIGR00563 rsmB ribosomal RNA s 98.8 5.4E-08 1.2E-12 103.3 13.3 105 255-360 240-373 (426)
110 PRK14966 unknown domain/N5-glu 98.8 1.4E-07 3.1E-12 99.0 15.2 120 255-388 253-401 (423)
111 PRK14901 16S rRNA methyltransf 98.8 1E-07 2.2E-12 101.5 14.1 106 255-360 254-389 (434)
112 PF03291 Pox_MCEL: mRNA cappin 98.8 2.5E-08 5.5E-13 102.3 9.1 103 253-357 62-188 (331)
113 PRK09328 N5-glutamine S-adenos 98.8 6.6E-08 1.4E-12 95.9 11.9 100 254-355 109-238 (275)
114 PF05219 DREV: DREV methyltran 98.8 6.5E-08 1.4E-12 94.9 11.5 136 210-356 54-189 (265)
115 PRK13943 protein-L-isoaspartat 98.7 7.6E-08 1.7E-12 98.4 12.3 95 255-356 82-181 (322)
116 smart00650 rADc Ribosomal RNA 98.7 5E-08 1.1E-12 90.4 9.9 94 255-355 15-113 (169)
117 PF00891 Methyltransf_2: O-met 98.7 1E-07 2.2E-12 93.1 12.2 102 253-360 100-204 (241)
118 PRK00811 spermidine synthase; 98.7 1.8E-07 3.9E-12 94.1 14.2 102 253-356 76-192 (283)
119 TIGR00536 hemK_fam HemK family 98.7 1.5E-07 3.2E-12 94.6 13.4 100 255-356 116-245 (284)
120 PRK14904 16S rRNA methyltransf 98.7 8.9E-08 1.9E-12 102.2 11.9 106 254-360 251-382 (445)
121 PRK11805 N5-glutamine S-adenos 98.7 7.8E-08 1.7E-12 97.9 10.7 99 255-355 135-263 (307)
122 PHA03411 putative methyltransf 98.7 9.3E-08 2E-12 95.2 10.9 126 255-389 66-211 (279)
123 PF01135 PCMT: Protein-L-isoas 98.7 5.6E-08 1.2E-12 93.6 8.9 111 231-356 58-173 (209)
124 KOG3045 Predicted RNA methylas 98.7 1.2E-07 2.5E-12 92.5 10.9 113 254-394 181-293 (325)
125 TIGR00446 nop2p NOL1/NOP2/sun 98.7 1E-07 2.2E-12 95.0 10.5 106 255-360 73-204 (264)
126 PRK04457 spermidine synthase; 98.7 1.4E-07 2.9E-12 94.0 11.3 102 254-356 67-178 (262)
127 PRK01581 speE spermidine synth 98.7 4.2E-07 9.2E-12 93.8 14.6 102 253-356 150-269 (374)
128 PRK14903 16S rRNA methyltransf 98.7 2.6E-07 5.7E-12 98.2 13.4 106 255-360 239-371 (431)
129 PF06080 DUF938: Protein of un 98.6 4.2E-07 9.2E-12 86.7 13.0 143 256-399 28-204 (204)
130 TIGR03704 PrmC_rel_meth putati 98.6 8E-07 1.7E-11 87.9 15.1 101 255-356 88-217 (251)
131 PF05891 Methyltransf_PK: AdoM 98.6 1.9E-07 4.1E-12 89.7 9.2 138 253-392 55-201 (218)
132 PRK14902 16S rRNA methyltransf 98.6 3.9E-07 8.5E-12 97.2 12.7 104 255-359 252-383 (444)
133 COG2518 Pcm Protein-L-isoaspar 98.6 4.8E-07 1E-11 86.5 11.8 107 231-356 58-170 (209)
134 KOG1975 mRNA cap methyltransfe 98.6 1.5E-07 3.2E-12 94.4 8.4 103 254-358 118-240 (389)
135 PRK01544 bifunctional N5-gluta 98.6 5.3E-07 1.1E-11 97.7 13.2 100 254-355 139-269 (506)
136 PF05724 TPMT: Thiopurine S-me 98.6 6.2E-07 1.4E-11 86.9 12.3 128 255-389 39-187 (218)
137 PHA03412 putative methyltransf 98.6 3.3E-07 7.3E-12 89.4 10.3 96 254-350 50-158 (241)
138 COG0220 Predicted S-adenosylme 98.6 2.1E-07 4.5E-12 90.7 8.6 100 255-356 50-165 (227)
139 COG2242 CobL Precorrin-6B meth 98.5 9.2E-07 2E-11 83.0 12.3 97 254-356 35-136 (187)
140 PF02390 Methyltransf_4: Putat 98.5 2.4E-07 5.3E-12 88.2 8.5 100 255-356 19-134 (195)
141 COG2519 GCD14 tRNA(1-methylade 98.5 8.6E-07 1.9E-11 86.7 12.4 108 236-358 85-198 (256)
142 TIGR00417 speE spermidine synt 98.5 6.9E-07 1.5E-11 89.2 11.1 101 253-355 72-186 (270)
143 PRK03612 spermidine synthase; 98.5 1.6E-06 3.4E-11 94.5 14.1 102 253-356 297-416 (521)
144 PLN02366 spermidine synthase 98.5 1.1E-06 2.5E-11 89.4 11.9 101 253-355 91-206 (308)
145 COG3963 Phospholipid N-methylt 98.5 1.4E-06 3.1E-11 80.1 10.9 121 231-359 34-160 (194)
146 PLN02781 Probable caffeoyl-CoA 98.5 1.5E-06 3.2E-11 85.2 11.7 101 254-358 69-181 (234)
147 PRK13168 rumA 23S rRNA m(5)U19 98.3 3.5E-06 7.6E-11 90.0 12.1 93 255-355 299-400 (443)
148 COG2890 HemK Methylase of poly 98.3 2.8E-06 6E-11 85.5 10.3 97 256-355 113-238 (280)
149 COG0500 SmtA SAM-dependent met 98.3 6.4E-06 1.4E-10 69.5 11.1 101 257-360 52-160 (257)
150 PF01739 CheR: CheR methyltran 98.3 4E-06 8.8E-11 80.0 10.5 103 253-355 31-175 (196)
151 KOG2899 Predicted methyltransf 98.3 3.2E-06 6.9E-11 82.0 9.5 102 253-355 58-209 (288)
152 PF08704 GCD14: tRNA methyltra 98.3 6.4E-06 1.4E-10 81.3 11.7 110 235-358 30-149 (247)
153 PRK11783 rlmL 23S rRNA m(2)G24 98.3 2E-06 4.3E-11 96.8 9.2 101 254-356 539-657 (702)
154 TIGR00478 tly hemolysin TlyA f 98.3 8.5E-06 1.9E-10 79.5 12.2 124 254-389 76-214 (228)
155 PRK15128 23S rRNA m(5)C1962 me 98.3 2.9E-06 6.2E-11 89.3 9.5 100 255-356 222-340 (396)
156 PRK03522 rumB 23S rRNA methylu 98.2 7.3E-06 1.6E-10 83.7 11.4 95 255-356 175-275 (315)
157 PF10294 Methyltransf_16: Puta 98.2 8.9E-06 1.9E-10 76.0 10.5 102 253-357 45-158 (173)
158 PRK10909 rsmD 16S rRNA m(2)G96 98.2 2.2E-05 4.7E-10 75.2 12.8 99 255-357 55-161 (199)
159 PRK00274 ksgA 16S ribosomal RN 98.2 5.7E-06 1.2E-10 82.7 8.6 83 233-326 30-114 (272)
160 COG1041 Predicted DNA modifica 98.2 1.1E-05 2.3E-10 82.6 10.6 115 231-356 183-311 (347)
161 PRK14896 ksgA 16S ribosomal RN 98.1 9.3E-06 2E-10 80.6 9.3 82 232-326 16-100 (258)
162 PF01596 Methyltransf_3: O-met 98.1 2.3E-05 5.1E-10 75.3 11.8 101 254-358 46-158 (205)
163 TIGR00479 rumA 23S rRNA (uraci 98.1 1.4E-05 3.1E-10 84.9 11.0 94 255-355 294-396 (431)
164 PRK10611 chemotaxis methyltran 98.1 2.1E-05 4.5E-10 79.4 11.5 101 255-355 117-262 (287)
165 COG2521 Predicted archaeal met 98.1 1.5E-05 3.3E-10 77.0 9.4 147 230-389 117-274 (287)
166 PRK01544 bifunctional N5-gluta 98.1 8.3E-06 1.8E-10 88.5 8.6 103 252-356 346-463 (506)
167 PRK11727 23S rRNA mA1618 methy 98.1 3.5E-05 7.6E-10 78.9 12.4 100 228-328 89-200 (321)
168 COG4122 Predicted O-methyltran 98.1 3.2E-05 6.9E-10 74.9 10.8 102 253-358 59-169 (219)
169 PLN02476 O-methyltransferase 98.0 3.1E-05 6.8E-10 77.6 11.0 101 254-358 119-231 (278)
170 KOG1331 Predicted methyltransf 98.0 4.5E-06 9.7E-11 82.9 4.5 98 255-358 47-146 (293)
171 TIGR00755 ksgA dimethyladenosi 98.0 4.1E-05 8.9E-10 75.6 11.4 67 255-326 31-103 (253)
172 PLN02672 methionine S-methyltr 98.0 3E-05 6.4E-10 90.1 11.8 99 255-355 120-278 (1082)
173 PF05185 PRMT5: PRMT5 arginine 98.0 3.1E-05 6.6E-10 82.8 11.0 97 254-352 187-294 (448)
174 KOG1499 Protein arginine N-met 98.0 1.4E-05 3.1E-10 81.4 8.0 96 254-352 61-164 (346)
175 PF07942 N2227: N2227-like pro 98.0 8.5E-05 1.8E-09 74.1 12.6 136 253-392 56-242 (270)
176 KOG2904 Predicted methyltransf 98.0 0.00013 2.8E-09 72.3 13.5 123 230-358 130-288 (328)
177 TIGR02085 meth_trns_rumB 23S r 97.9 5E-05 1.1E-09 79.5 10.8 94 255-355 235-334 (374)
178 PF12147 Methyltransf_20: Puta 97.9 0.00013 2.8E-09 72.9 12.8 139 253-391 135-297 (311)
179 KOG1269 SAM-dependent methyltr 97.9 1.6E-05 3.4E-10 82.6 6.4 100 255-357 112-217 (364)
180 PRK04148 hypothetical protein; 97.9 7.3E-05 1.6E-09 67.0 9.5 92 254-356 17-110 (134)
181 COG1352 CheR Methylase of chem 97.9 7.8E-05 1.7E-09 74.4 10.7 102 254-355 97-241 (268)
182 PF01170 UPF0020: Putative RNA 97.9 5.9E-05 1.3E-09 70.9 9.2 100 255-354 30-150 (179)
183 PLN02823 spermine synthase 97.9 0.0001 2.2E-09 76.0 11.7 101 253-355 103-220 (336)
184 COG2263 Predicted RNA methylas 97.9 9.1E-05 2E-09 69.7 10.0 114 254-389 46-165 (198)
185 KOG1661 Protein-L-isoaspartate 97.8 8.2E-05 1.8E-09 71.0 8.9 94 255-355 84-193 (237)
186 PTZ00338 dimethyladenosine tra 97.8 6.1E-05 1.3E-09 76.3 8.2 84 233-330 24-113 (294)
187 TIGR00095 RNA methyltransferas 97.7 0.00047 1E-08 65.4 12.6 98 255-356 51-160 (189)
188 PLN02589 caffeoyl-CoA O-methyl 97.7 0.00012 2.7E-09 72.3 8.9 100 254-357 80-192 (247)
189 PF09243 Rsm22: Mitochondrial 97.7 0.00056 1.2E-08 68.6 13.4 125 253-389 33-165 (274)
190 KOG3191 Predicted N6-DNA-methy 97.7 0.00069 1.5E-08 63.5 12.5 105 254-359 44-172 (209)
191 PRK11933 yebU rRNA (cytosine-C 97.7 0.0005 1.1E-08 74.0 13.1 107 254-360 114-247 (470)
192 KOG1500 Protein arginine N-met 97.6 0.0002 4.2E-09 72.6 8.6 97 253-354 177-281 (517)
193 PRK00536 speE spermidine synth 97.6 0.0006 1.3E-08 68.0 12.0 92 253-356 72-172 (262)
194 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.6 0.0005 1.1E-08 68.2 11.0 137 253-391 56-238 (256)
195 PRK04338 N(2),N(2)-dimethylgua 97.6 0.00039 8.5E-09 73.0 10.6 95 255-355 59-158 (382)
196 PF11968 DUF3321: Putative met 97.6 0.00062 1.3E-08 65.6 10.8 118 255-392 53-181 (219)
197 PF02527 GidB: rRNA small subu 97.6 0.00073 1.6E-08 63.9 11.2 113 233-355 31-148 (184)
198 KOG2352 Predicted spermine/spe 97.5 0.00071 1.5E-08 71.9 11.1 100 256-357 51-163 (482)
199 KOG3178 Hydroxyindole-O-methyl 97.5 0.00054 1.2E-08 70.1 9.4 101 254-360 178-280 (342)
200 KOG3987 Uncharacterized conser 97.5 5.9E-05 1.3E-09 71.8 2.2 124 219-355 83-207 (288)
201 PF02475 Met_10: Met-10+ like- 97.5 0.00039 8.4E-09 66.6 7.8 93 254-353 102-200 (200)
202 COG0421 SpeE Spermidine syntha 97.4 0.0011 2.5E-08 66.7 10.9 101 253-355 76-190 (282)
203 PF02384 N6_Mtase: N-6 DNA Met 97.3 0.0011 2.3E-08 67.3 10.0 118 231-356 32-184 (311)
204 PF01728 FtsJ: FtsJ-like methy 97.3 0.0004 8.6E-09 64.8 6.1 99 253-357 23-141 (181)
205 PF01564 Spermine_synth: Sperm 97.3 0.0012 2.5E-08 65.3 9.3 102 253-356 76-192 (246)
206 TIGR03439 methyl_EasF probable 97.2 0.0028 6.1E-08 65.0 11.6 101 255-355 78-197 (319)
207 COG0030 KsgA Dimethyladenosine 97.2 0.0012 2.7E-08 65.4 8.7 86 233-330 18-107 (259)
208 COG1092 Predicted SAM-dependen 97.2 0.0011 2.4E-08 69.6 8.0 103 254-358 218-339 (393)
209 PF03602 Cons_hypoth95: Conser 97.2 0.0014 3E-08 62.0 7.9 121 228-357 23-155 (183)
210 KOG3420 Predicted RNA methylas 97.1 0.0012 2.6E-08 59.7 6.9 72 253-326 48-123 (185)
211 KOG0820 Ribosomal RNA adenine 97.1 0.0021 4.5E-08 63.8 8.9 81 231-324 44-130 (315)
212 PRK05031 tRNA (uracil-5-)-meth 97.1 0.0023 5.1E-08 66.7 9.8 93 255-356 208-321 (362)
213 COG2520 Predicted methyltransf 97.1 0.0026 5.6E-08 65.6 9.8 119 254-385 189-313 (341)
214 KOG3201 Uncharacterized conser 97.1 0.00055 1.2E-08 63.0 4.3 135 255-401 31-176 (201)
215 TIGR02143 trmA_only tRNA (urac 97.1 0.0012 2.6E-08 68.6 7.4 93 255-356 199-312 (353)
216 KOG1709 Guanidinoacetate methy 97.1 0.004 8.6E-08 59.9 10.0 119 226-356 83-207 (271)
217 TIGR02987 met_A_Alw26 type II 97.0 0.0054 1.2E-07 67.0 12.0 71 254-324 32-119 (524)
218 KOG1663 O-methyltransferase [S 97.0 0.007 1.5E-07 58.8 11.0 98 254-355 74-183 (237)
219 KOG2915 tRNA(1-methyladenosine 97.0 0.0091 2E-07 59.3 11.6 129 235-389 95-232 (314)
220 PRK11760 putative 23S rRNA C24 97.0 0.014 3.1E-07 60.1 13.4 93 253-355 211-305 (357)
221 COG1189 Predicted rRNA methyla 97.0 0.0077 1.7E-07 58.8 10.9 130 253-389 79-221 (245)
222 PRK00050 16S rRNA m(4)C1402 me 96.9 0.0029 6.3E-08 64.2 7.8 85 234-326 8-99 (296)
223 PF10672 Methyltrans_SAM: S-ad 96.9 0.0018 3.9E-08 65.3 6.3 103 254-358 124-241 (286)
224 PF08123 DOT1: Histone methyla 96.9 0.0025 5.5E-08 61.3 6.9 115 231-356 28-159 (205)
225 COG0742 N6-adenine-specific me 96.8 0.02 4.3E-07 54.3 12.1 130 220-358 16-157 (187)
226 TIGR00308 TRM1 tRNA(guanine-26 96.7 0.0056 1.2E-07 64.2 8.4 96 255-355 46-147 (374)
227 COG0293 FtsJ 23S rRNA methylas 96.7 0.019 4.2E-07 55.1 11.2 97 254-356 46-160 (205)
228 PF03059 NAS: Nicotianamine sy 96.7 0.013 2.9E-07 58.8 10.5 102 253-355 120-230 (276)
229 COG0357 GidB Predicted S-adeno 96.6 0.018 3.9E-07 55.8 10.9 120 254-389 68-192 (215)
230 PF00398 RrnaAD: Ribosomal RNA 96.6 0.0088 1.9E-07 59.5 9.0 102 231-347 16-123 (262)
231 COG4627 Uncharacterized protei 96.5 0.0005 1.1E-08 62.8 -0.6 54 307-360 37-91 (185)
232 PF01269 Fibrillarin: Fibrilla 96.5 0.022 4.8E-07 55.2 10.4 120 231-356 52-179 (229)
233 COG0144 Sun tRNA and rRNA cyto 96.4 0.02 4.3E-07 59.6 10.3 107 254-360 157-293 (355)
234 COG2265 TrmA SAM-dependent met 96.4 0.023 5E-07 60.7 10.7 95 254-355 294-396 (432)
235 PRK11783 rlmL 23S rRNA m(2)G24 96.4 0.021 4.6E-07 64.7 11.1 104 254-357 191-349 (702)
236 KOG2798 Putative trehalase [Ca 96.3 0.041 8.8E-07 55.8 11.3 135 253-391 150-336 (369)
237 COG3897 Predicted methyltransf 96.1 0.018 3.9E-07 54.8 7.3 99 254-359 80-183 (218)
238 PF13578 Methyltransf_24: Meth 96.0 0.0021 4.6E-08 54.4 0.7 96 258-355 1-105 (106)
239 PF13679 Methyltransf_32: Meth 96.0 0.016 3.5E-07 52.1 6.2 96 253-358 25-134 (141)
240 PF04816 DUF633: Family of unk 96.0 0.097 2.1E-06 50.4 11.8 116 257-391 1-123 (205)
241 COG4798 Predicted methyltransf 95.9 0.077 1.7E-06 50.5 10.2 135 255-391 50-204 (238)
242 COG4076 Predicted RNA methylas 95.8 0.021 4.5E-07 54.0 6.4 94 255-353 34-133 (252)
243 PF09445 Methyltransf_15: RNA 95.7 0.015 3.2E-07 54.0 4.8 66 256-324 2-76 (163)
244 PLN02668 indole-3-acetate carb 95.6 0.088 1.9E-06 55.4 10.8 48 311-359 156-241 (386)
245 PF01189 Nol1_Nop2_Fmu: NOL1/N 95.6 0.023 4.9E-07 57.4 6.0 105 254-358 86-222 (283)
246 PF04672 Methyltransf_19: S-ad 95.4 0.12 2.6E-06 51.7 10.4 106 253-359 68-194 (267)
247 COG0116 Predicted N6-adenine-s 95.4 0.16 3.5E-06 53.1 11.8 130 223-356 165-345 (381)
248 PF05958 tRNA_U5-meth_tr: tRNA 95.4 0.045 9.7E-07 57.0 7.5 53 255-310 198-255 (352)
249 COG5459 Predicted rRNA methyla 95.4 0.15 3.2E-06 52.6 10.9 107 253-359 113-229 (484)
250 TIGR01444 fkbM_fam methyltrans 95.1 0.033 7.1E-07 49.4 4.9 41 256-297 1-41 (143)
251 COG4262 Predicted spermidine s 94.6 0.18 3.9E-06 52.3 9.1 104 253-358 289-410 (508)
252 KOG3115 Methyltransferase-like 94.5 0.11 2.4E-06 49.8 6.8 40 255-295 62-101 (249)
253 cd04789 HTH_Cfa Helix-Turn-Hel 94.3 0.0024 5.1E-08 54.6 -4.4 60 94-163 32-91 (102)
254 KOG1122 tRNA and rRNA cytosine 94.2 0.2 4.4E-06 52.7 8.6 110 250-360 238-376 (460)
255 KOG2187 tRNA uracil-5-methyltr 93.9 0.073 1.6E-06 57.2 4.9 69 231-310 369-442 (534)
256 PF07091 FmrO: Ribosomal RNA m 93.8 0.36 7.8E-06 47.8 9.1 127 254-387 106-239 (251)
257 PF06962 rRNA_methylase: Putat 93.6 0.38 8.2E-06 43.6 8.3 98 280-384 1-114 (140)
258 cd04775 HTH_Cfa-like Helix-Tur 93.2 0.0046 9.9E-08 52.8 -4.6 59 93-161 31-89 (102)
259 COG1064 AdhP Zn-dependent alco 93.1 0.21 4.6E-06 51.6 6.5 94 255-358 168-262 (339)
260 COG1889 NOP1 Fibrillarin-like 92.8 2.9 6.2E-05 40.4 13.0 132 252-393 75-215 (231)
261 cd04790 HTH_Cfa-like_unk Helix 92.3 0.029 6.3E-07 52.5 -0.9 60 94-163 33-94 (172)
262 PF03492 Methyltransf_7: SAM d 92.2 0.47 1E-05 49.1 7.8 107 253-360 16-188 (334)
263 KOG2793 Putative N2,N2-dimethy 91.9 1.1 2.3E-05 44.5 9.5 103 254-359 87-203 (248)
264 PF05971 Methyltransf_10: Prot 91.9 0.82 1.8E-05 46.5 8.9 97 228-328 80-188 (299)
265 KOG0822 Protein kinase inhibit 90.9 0.56 1.2E-05 50.8 6.8 101 254-355 368-478 (649)
266 cd04782 HTH_BltR Helix-Turn-He 90.6 0.036 7.9E-07 46.8 -1.9 33 95-130 33-65 (97)
267 cd08283 FDH_like_1 Glutathione 90.2 1.7 3.6E-05 45.3 9.7 100 255-356 186-307 (386)
268 PRK13699 putative methylase; P 90.1 0.97 2.1E-05 44.1 7.3 74 312-402 15-102 (227)
269 PF04989 CmcI: Cephalosporin h 90.1 0.34 7.4E-06 46.7 4.0 103 253-357 32-149 (206)
270 COG0286 HsdM Type I restrictio 90.0 2.5 5.3E-05 46.1 11.0 119 231-357 172-328 (489)
271 cd04788 HTH_NolA-AlbR Helix-Tu 90.0 0.039 8.5E-07 46.5 -2.3 34 94-130 32-65 (96)
272 TIGR00006 S-adenosyl-methyltra 89.9 1.3 2.8E-05 45.3 8.3 84 232-324 7-99 (305)
273 PHA01634 hypothetical protein 89.5 2.1 4.6E-05 38.3 8.1 69 253-323 28-98 (156)
274 KOG1562 Spermidine synthase [A 89.5 1 2.2E-05 45.7 6.9 101 253-355 121-236 (337)
275 COG2384 Predicted SAM-dependen 89.5 7.3 0.00016 38.0 12.5 117 256-391 19-142 (226)
276 TIGR02054 MerD mercuric resist 89.4 0.2 4.4E-06 44.2 1.7 34 94-130 35-68 (120)
277 PRK13749 transcriptional regul 89.1 0.18 3.9E-06 44.5 1.2 33 95-130 36-68 (121)
278 PF10354 DUF2431: Domain of un 89.1 3.6 7.8E-05 38.2 9.9 121 259-390 2-150 (166)
279 cd08254 hydroxyacyl_CoA_DH 6-h 88.9 2.4 5.3E-05 42.4 9.5 92 255-356 167-264 (338)
280 PF03269 DUF268: Caenorhabditi 88.6 0.3 6.5E-06 45.3 2.3 45 315-359 61-115 (177)
281 COG0789 SoxR Predicted transcr 88.2 0.23 5E-06 43.2 1.2 32 96-130 34-65 (124)
282 cd04787 HTH_HMRTR_unk Helix-Tu 87.7 0.24 5.3E-06 44.2 1.2 35 93-130 31-65 (133)
283 PF02005 TRM: N2,N2-dimethylgu 87.3 2.9 6.3E-05 44.0 9.1 128 223-356 18-155 (377)
284 cd00315 Cyt_C5_DNA_methylase C 87.0 1.9 4E-05 43.3 7.1 123 256-388 2-139 (275)
285 cd01111 HTH_MerD Helix-Turn-He 87.0 0.29 6.4E-06 42.1 1.2 35 93-130 31-65 (107)
286 cd04786 HTH_MerR-like_sg7 Heli 87.0 0.16 3.5E-06 45.4 -0.5 33 95-130 33-65 (131)
287 PRK09880 L-idonate 5-dehydroge 86.8 3.2 6.9E-05 42.4 8.9 94 254-356 170-267 (343)
288 KOG1501 Arginine N-methyltrans 86.8 1.3 2.8E-05 47.1 5.8 67 227-297 42-108 (636)
289 cd04768 HTH_BmrR-like Helix-Tu 86.7 0.32 6.8E-06 41.0 1.2 33 95-130 33-65 (96)
290 PF06859 Bin3: Bicoid-interact 86.7 0.35 7.6E-06 41.9 1.5 42 317-358 1-47 (110)
291 cd04784 HTH_CadR-PbrR Helix-Tu 86.3 0.34 7.3E-06 42.8 1.2 33 95-130 33-65 (127)
292 PF01861 DUF43: Protein of unk 85.8 18 0.00039 35.8 12.9 124 254-389 45-175 (243)
293 KOG2730 Methylase [General fun 85.7 0.93 2E-05 44.2 3.9 68 254-324 95-172 (263)
294 TIGR02051 MerR Hg(II)-responsi 85.7 0.2 4.3E-06 44.2 -0.6 34 94-130 31-64 (124)
295 cd01107 HTH_BmrR Helix-Turn-He 85.7 0.22 4.8E-06 42.8 -0.3 33 95-130 34-66 (108)
296 cd01282 HTH_MerR-like_sg3 Heli 85.2 0.4 8.7E-06 41.5 1.2 35 93-130 30-64 (112)
297 cd01108 HTH_CueR Helix-Turn-He 85.2 0.41 8.9E-06 42.4 1.2 34 94-130 32-65 (127)
298 KOG2920 Predicted methyltransf 85.1 0.39 8.5E-06 48.2 1.2 100 253-355 116-234 (282)
299 cd01105 HTH_GlnR-like Helix-Tu 85.1 0.42 9.1E-06 39.6 1.2 32 96-130 35-66 (88)
300 PF03514 GRAS: GRAS domain fam 85.1 21 0.00046 37.5 14.1 103 255-358 112-246 (374)
301 TIGR02044 CueR Cu(I)-responsiv 85.0 0.53 1.1E-05 41.7 1.8 33 94-129 32-64 (127)
302 KOG1099 SAM-dependent methyltr 84.8 1.1 2.3E-05 44.0 3.9 96 254-356 42-164 (294)
303 TIGR02047 CadR-PbrR Cd(II)/Pb( 84.8 0.42 9E-06 42.4 1.1 33 95-130 33-65 (127)
304 PF07757 AdoMet_MTase: Predict 84.8 0.77 1.7E-05 39.8 2.6 31 253-286 58-88 (112)
305 PRK11524 putative methyltransf 84.7 0.97 2.1E-05 45.5 3.8 53 303-355 11-80 (284)
306 COG3129 Predicted SAM-dependen 84.6 2.3 5E-05 41.8 6.1 100 227-329 54-165 (292)
307 cd01110 HTH_SoxR Helix-Turn-He 84.5 0.46 1E-05 42.8 1.2 34 93-129 31-64 (139)
308 KOG1596 Fibrillarin and relate 84.4 3.4 7.4E-05 40.8 7.1 98 255-358 158-264 (317)
309 PRK10227 DNA-binding transcrip 84.2 0.55 1.2E-05 42.2 1.6 28 93-120 31-58 (135)
310 PF00107 ADH_zinc_N: Zinc-bind 83.9 2 4.3E-05 37.0 5.0 86 263-358 1-92 (130)
311 PRK13752 putative transcriptio 83.9 0.5 1.1E-05 43.0 1.2 34 94-130 39-72 (144)
312 cd04763 HTH_MlrA-like Helix-Tu 83.8 0.45 9.7E-06 37.1 0.7 34 93-129 31-64 (68)
313 KOG2198 tRNA cytosine-5-methyl 83.5 16 0.00034 38.3 11.9 107 254-360 156-301 (375)
314 cd04785 HTH_CadR-PbrR-like Hel 83.3 0.67 1.4E-05 41.0 1.7 35 93-130 31-65 (126)
315 PRK09514 zntR zinc-responsive 82.9 0.58 1.3E-05 42.2 1.2 35 93-130 32-66 (140)
316 PRK09424 pntA NAD(P) transhydr 82.9 7.7 0.00017 42.5 10.0 101 253-356 164-286 (509)
317 TIGR02043 ZntR Zn(II)-responsi 82.4 0.63 1.4E-05 41.5 1.2 34 94-130 33-66 (131)
318 cd04777 HTH_MerR-like_sg1 Heli 81.3 0.29 6.2E-06 41.9 -1.4 33 95-130 31-63 (107)
319 cd04773 HTH_TioE_rpt2 Second H 81.2 0.74 1.6E-05 39.6 1.2 34 94-130 32-65 (108)
320 cd04770 HTH_HMRTR Helix-Turn-H 80.9 0.89 1.9E-05 39.8 1.6 33 95-130 33-65 (123)
321 cd04764 HTH_MlrA-like_sg1 Heli 80.9 0.68 1.5E-05 35.9 0.8 34 93-129 30-63 (67)
322 COG4301 Uncharacterized conser 80.9 22 0.00048 35.5 11.2 102 254-358 79-196 (321)
323 PF13411 MerR_1: MerR HTH fami 80.8 0.7 1.5E-05 35.8 0.8 28 93-120 30-57 (69)
324 TIGR01950 SoxR redox-sensitive 80.7 0.78 1.7E-05 41.6 1.2 33 94-129 32-64 (142)
325 cd04781 HTH_MerR-like_sg6 Heli 80.2 0.84 1.8E-05 39.9 1.2 25 96-120 33-57 (120)
326 KOG2539 Mitochondrial/chloropl 79.9 7.1 0.00015 42.0 8.1 106 253-359 200-319 (491)
327 cd01109 HTH_YyaN Helix-Turn-He 79.9 0.98 2.1E-05 39.0 1.5 34 94-130 32-65 (113)
328 cd08245 CAD Cinnamyl alcohol d 79.5 11 0.00024 37.7 9.3 93 255-356 164-257 (330)
329 PRK10742 putative methyltransf 79.5 8.4 0.00018 38.3 8.0 51 235-294 76-126 (250)
330 cd05188 MDR Medium chain reduc 79.4 10 0.00022 36.1 8.7 94 254-357 135-234 (271)
331 cd04783 HTH_MerR1 Helix-Turn-H 79.4 0.94 2E-05 40.0 1.2 34 94-130 32-65 (126)
332 cd04772 HTH_TioE_rpt1 First He 79.1 1.2 2.5E-05 37.8 1.7 25 94-118 32-56 (99)
333 TIGR02822 adh_fam_2 zinc-bindi 79.0 13 0.00028 37.9 9.6 88 255-356 167-255 (329)
334 KOG0024 Sorbitol dehydrogenase 78.9 12 0.00026 38.6 9.0 99 254-359 170-277 (354)
335 cd08232 idonate-5-DH L-idonate 78.2 13 0.00027 37.5 9.3 93 254-356 166-263 (339)
336 cd04766 HTH_HspR Helix-Turn-He 78.0 0.48 1E-05 39.3 -1.0 35 93-130 31-66 (91)
337 cd04780 HTH_MerR-like_sg5 Heli 77.8 0.96 2.1E-05 38.1 0.8 35 93-130 31-66 (95)
338 TIGR02825 B4_12hDH leukotriene 77.3 25 0.00053 35.3 11.1 92 255-356 140-238 (325)
339 cd01104 HTH_MlrA-CarA Helix-Tu 77.3 1.2 2.6E-05 34.3 1.2 26 95-120 33-58 (68)
340 cd01279 HTH_HspR-like Helix-Tu 77.2 0.48 1E-05 40.0 -1.2 35 93-130 31-66 (98)
341 PRK01747 mnmC bifunctional tRN 77.0 7.1 0.00015 44.0 7.7 100 254-355 58-206 (662)
342 COG3510 CmcI Cephalosporin hyd 76.5 10 0.00022 36.4 7.2 108 253-361 69-186 (237)
343 PF01555 N6_N4_Mtase: DNA meth 76.5 6.5 0.00014 36.9 6.2 40 254-296 192-231 (231)
344 cd08234 threonine_DH_like L-th 76.3 16 0.00034 36.6 9.3 92 255-356 161-258 (334)
345 cd04774 HTH_YfmP Helix-Turn-He 75.8 1.4 3E-05 37.2 1.2 34 93-129 30-64 (96)
346 PF01795 Methyltransf_5: MraW 75.4 11 0.00024 38.6 7.8 83 232-323 7-99 (310)
347 PRK15002 redox-sensitivie tran 74.4 1.5 3.4E-05 40.3 1.3 35 93-130 41-75 (154)
348 COG0275 Predicted S-adenosylme 74.1 16 0.00034 37.4 8.4 59 231-297 9-67 (314)
349 cd04779 HTH_MerR-like_sg4 Heli 73.8 1.6 3.5E-05 39.2 1.2 34 94-130 31-64 (134)
350 TIGR00561 pntA NAD(P) transhyd 73.5 9.6 0.00021 41.8 7.3 94 254-352 164-281 (511)
351 cd04765 HTH_MlrA-like_sg2 Heli 73.4 1.4 3.1E-05 37.3 0.7 35 93-130 31-66 (99)
352 COG1867 TRM1 N2,N2-dimethylgua 73.3 13 0.00027 39.0 7.6 99 254-358 53-157 (380)
353 cd01106 HTH_TipAL-Mta Helix-Tu 73.2 1.7 3.7E-05 36.8 1.2 33 95-130 33-65 (103)
354 TIGR00675 dcm DNA-methyltransf 72.2 33 0.00072 35.0 10.5 123 257-388 1-136 (315)
355 cd08230 glucose_DH Glucose deh 72.1 18 0.00038 37.0 8.6 92 255-357 174-271 (355)
356 PLN03154 putative allyl alcoho 72.1 31 0.00067 35.4 10.4 93 254-356 159-259 (348)
357 TIGR03451 mycoS_dep_FDH mycoth 71.5 21 0.00046 36.5 9.0 92 255-356 178-277 (358)
358 cd08237 ribitol-5-phosphate_DH 71.4 18 0.00039 37.0 8.4 93 254-356 164-257 (341)
359 cd04767 HTH_HspR-like_MBC Heli 70.4 2.2 4.7E-05 37.7 1.2 40 96-139 33-73 (120)
360 PRK11524 putative methyltransf 70.3 11 0.00023 37.9 6.4 42 253-297 208-249 (284)
361 cd08255 2-desacetyl-2-hydroxye 70.2 24 0.00051 34.3 8.7 92 254-356 98-191 (277)
362 KOG4058 Uncharacterized conser 70.1 24 0.00051 32.6 7.7 97 253-357 72-174 (199)
363 PF04445 SAM_MT: Putative SAM- 70.0 12 0.00025 37.0 6.3 83 235-326 63-160 (234)
364 PTZ00357 methyltransferase; Pr 70.0 24 0.00052 40.1 9.1 93 256-350 703-830 (1072)
365 KOG4589 Cell division protein 69.9 5 0.00011 38.3 3.5 99 254-358 70-187 (232)
366 smart00422 HTH_MERR helix_turn 69.6 2.2 4.8E-05 32.9 0.9 27 94-120 32-58 (70)
367 cd08281 liver_ADH_like1 Zinc-d 69.4 21 0.00046 36.7 8.6 92 255-356 193-291 (371)
368 COG1063 Tdh Threonine dehydrog 67.9 25 0.00054 36.4 8.6 96 255-358 170-272 (350)
369 cd04776 HTH_GnyR Helix-Turn-He 67.6 2.4 5.3E-05 37.0 0.9 31 97-130 33-63 (118)
370 TIGR03201 dearomat_had 6-hydro 67.3 25 0.00054 35.9 8.4 95 254-357 167-274 (349)
371 KOG2651 rRNA adenine N-6-methy 66.6 15 0.00032 38.7 6.5 41 253-295 153-193 (476)
372 cd08239 THR_DH_like L-threonin 66.1 32 0.0007 34.6 8.9 93 255-356 165-263 (339)
373 cd08294 leukotriene_B4_DH_like 66.0 49 0.0011 32.9 10.2 90 255-355 145-241 (329)
374 cd08261 Zn_ADH7 Alcohol dehydr 65.9 35 0.00075 34.3 9.1 92 255-356 161-259 (337)
375 COG0270 Dcm Site-specific DNA 65.5 63 0.0014 33.2 11.0 123 254-386 3-141 (328)
376 cd04769 HTH_MerR2 Helix-Turn-H 65.5 3.7 8.1E-05 35.6 1.7 31 96-126 33-63 (116)
377 TIGR03366 HpnZ_proposed putati 65.4 25 0.00055 34.6 7.9 93 255-356 122-219 (280)
378 PF11599 AviRa: RRNA methyltra 65.3 14 0.00031 36.0 5.6 46 252-297 50-96 (246)
379 cd05565 PTS_IIB_lactose PTS_II 65.2 14 0.0003 31.4 5.0 74 260-355 5-78 (99)
380 PRK15043 transcriptional regul 64.9 3.2 7E-05 41.0 1.3 27 94-120 35-61 (243)
381 COG0287 TyrA Prephenate dehydr 64.6 30 0.00065 34.9 8.2 90 255-352 4-95 (279)
382 TIGR01202 bchC 2-desacetyl-2-h 64.6 30 0.00065 34.7 8.3 85 255-356 146-232 (308)
383 cd05564 PTS_IIB_chitobiose_lic 64.0 15 0.00033 30.7 5.1 75 260-356 4-79 (96)
384 PRK13699 putative methylase; P 63.3 19 0.00042 35.0 6.4 41 254-297 164-204 (227)
385 cd05278 FDH_like Formaldehyde 61.7 44 0.00096 33.5 9.0 91 255-355 169-267 (347)
386 cd08295 double_bond_reductase_ 61.2 63 0.0014 32.6 10.0 91 255-355 153-251 (338)
387 KOG1253 tRNA methyltransferase 60.2 7.7 0.00017 42.0 3.1 100 253-357 109-218 (525)
388 cd00401 AdoHcyase S-adenosyl-L 59.4 44 0.00096 35.7 8.7 87 254-357 202-291 (413)
389 PF00145 DNA_methylase: C-5 cy 59.3 12 0.00026 37.3 4.3 123 256-389 2-139 (335)
390 TIGR00853 pts-lac PTS system, 58.9 23 0.00049 29.8 5.2 73 255-350 4-76 (95)
391 PF05711 TylF: Macrocin-O-meth 58.5 1.3E+02 0.0027 30.0 11.2 102 254-358 75-215 (248)
392 PF02636 Methyltransf_28: Puta 58.0 5.7 0.00012 39.1 1.7 44 254-297 19-69 (252)
393 PRK10458 DNA cytosine methylas 56.7 1.7E+02 0.0036 32.0 12.6 42 254-297 88-129 (467)
394 KOG2671 Putative RNA methylase 56.4 14 0.00031 38.4 4.2 101 255-358 210-357 (421)
395 PF09125 COX2-transmemb: Cytoc 56.4 14 0.0003 25.6 2.8 21 57-77 14-34 (38)
396 PRK13182 racA polar chromosome 56.2 5.1 0.00011 37.7 0.9 37 91-130 28-64 (175)
397 PLN02586 probable cinnamyl alc 56.2 34 0.00074 35.2 7.2 93 255-356 185-279 (360)
398 PLN02740 Alcohol dehydrogenase 56.1 58 0.0013 33.7 8.9 93 255-356 200-301 (381)
399 cd08236 sugar_DH NAD(P)-depend 55.8 58 0.0013 32.7 8.7 93 255-356 161-259 (343)
400 cd05285 sorbitol_DH Sorbitol d 55.2 63 0.0014 32.6 8.8 92 255-356 164-266 (343)
401 PF11899 DUF3419: Protein of u 54.8 18 0.00039 38.2 4.8 60 299-359 275-338 (380)
402 PF14740 DUF4471: Domain of un 54.4 23 0.00049 36.1 5.2 66 315-388 220-285 (289)
403 COG0604 Qor NADPH:quinone redu 54.3 66 0.0014 33.0 8.8 95 254-358 143-244 (326)
404 COG1565 Uncharacterized conser 54.0 22 0.00047 37.3 5.1 45 253-297 77-128 (370)
405 PRK07502 cyclohexadienyl dehyd 53.8 57 0.0012 32.9 8.2 89 255-352 7-97 (307)
406 PLN02827 Alcohol dehydrogenase 53.7 63 0.0014 33.6 8.7 94 254-356 194-296 (378)
407 PF02153 PDH: Prephenate dehyd 53.7 32 0.00069 34.0 6.2 78 267-354 1-78 (258)
408 cd08293 PTGR2 Prostaglandin re 53.1 83 0.0018 31.6 9.3 90 255-355 156-254 (345)
409 cd08285 NADP_ADH NADP(H)-depen 53.0 69 0.0015 32.4 8.7 92 255-356 168-267 (351)
410 COG1568 Predicted methyltransf 52.9 81 0.0017 32.2 8.6 165 255-440 154-330 (354)
411 TIGR02818 adh_III_F_hyde S-(hy 52.9 85 0.0018 32.3 9.5 93 255-356 187-288 (368)
412 cd00592 HTH_MerR-like Helix-Tu 51.8 7 0.00015 32.6 1.0 35 93-130 30-64 (100)
413 cd05281 TDH Threonine dehydrog 51.2 95 0.0021 31.3 9.4 92 255-356 165-263 (341)
414 cd08242 MDR_like Medium chain 50.4 1.2E+02 0.0027 29.9 10.0 85 255-355 157-245 (319)
415 PLN02178 cinnamyl-alcohol dehy 50.0 49 0.0011 34.5 7.2 92 255-356 180-274 (375)
416 cd08231 MDR_TM0436_like Hypoth 49.9 1.2E+02 0.0026 30.8 10.0 92 255-356 179-281 (361)
417 cd04761 HTH_MerR-SF Helix-Turn 49.7 9.3 0.0002 27.1 1.3 19 94-112 31-49 (49)
418 PRK09590 celB cellobiose phosp 49.7 44 0.00095 28.6 5.6 75 256-353 3-79 (104)
419 cd04778 HTH_MerR-like_sg2 Heli 49.7 7.8 0.00017 37.7 1.1 34 94-130 32-65 (219)
420 TIGR00497 hsdM type I restrict 48.6 1.8E+02 0.0039 31.7 11.5 102 255-356 219-356 (501)
421 PF02254 TrkA_N: TrkA-N domain 48.5 44 0.00095 28.0 5.5 89 262-356 4-97 (116)
422 cd08298 CAD2 Cinnamyl alcohol 47.9 1.6E+02 0.0035 29.2 10.4 87 255-355 169-256 (329)
423 TIGR00692 tdh L-threonine 3-de 47.7 1.2E+02 0.0027 30.4 9.6 92 255-356 163-262 (340)
424 cd08277 liver_alcohol_DH_like 47.6 1.1E+02 0.0024 31.3 9.4 93 255-356 186-287 (365)
425 cd08300 alcohol_DH_class_III c 47.1 1.2E+02 0.0026 31.1 9.6 93 255-356 188-289 (368)
426 cd08279 Zn_ADH_class_III Class 47.0 1E+02 0.0022 31.5 8.9 92 255-356 184-283 (363)
427 COG2933 Predicted SAM-dependen 46.8 73 0.0016 32.2 7.2 86 253-348 211-296 (358)
428 PRK14756 hypothetical protein; 45.8 25 0.00055 22.9 2.5 23 56-78 4-26 (29)
429 cd08241 QOR1 Quinone oxidoredu 41.9 2E+02 0.0043 27.8 9.8 92 254-356 140-239 (323)
430 PF14812 PBP1_TM: Transmembran 41.3 1.8 3.8E-05 35.5 -4.0 21 52-72 60-80 (81)
431 cd08238 sorbose_phosphate_red 41.0 1.4E+02 0.003 31.3 9.0 93 255-354 177-287 (410)
432 cd08270 MDR4 Medium chain dehy 40.9 1.9E+02 0.0042 28.1 9.6 88 254-355 133-222 (305)
433 cd08243 quinone_oxidoreductase 40.2 2.1E+02 0.0046 27.8 9.7 89 255-356 144-239 (320)
434 cd08233 butanediol_DH_like (2R 39.5 1.5E+02 0.0033 29.9 8.8 92 255-356 174-273 (351)
435 cd08278 benzyl_alcohol_DH Benz 39.0 1.5E+02 0.0033 30.3 8.8 92 255-356 188-286 (365)
436 cd05283 CAD1 Cinnamyl alcohol 39.0 1.3E+02 0.0028 30.3 8.1 92 255-356 171-264 (337)
437 PF05050 Methyltransf_21: Meth 38.7 47 0.001 29.3 4.4 39 259-297 1-42 (167)
438 PRK05396 tdh L-threonine 3-deh 38.6 2.1E+02 0.0045 28.7 9.6 93 255-357 165-265 (341)
439 PRK07417 arogenate dehydrogena 38.3 1.5E+02 0.0032 29.5 8.3 84 256-351 2-87 (279)
440 PRK15001 SAM-dependent 23S rib 37.7 2E+02 0.0043 30.4 9.4 91 256-357 47-144 (378)
441 cd08263 Zn_ADH10 Alcohol dehyd 37.2 1.3E+02 0.0027 30.8 7.8 92 255-356 189-288 (367)
442 cd08266 Zn_ADH_like1 Alcohol d 36.8 2.4E+02 0.0052 27.6 9.6 92 255-356 168-266 (342)
443 PF12273 RCR: Chitin synthesis 36.8 20 0.00043 31.7 1.5 18 58-75 1-18 (130)
444 PRK10310 PTS system galactitol 36.6 53 0.0011 27.4 4.0 13 260-272 7-19 (94)
445 cd08267 MDR1 Medium chain dehy 36.5 3E+02 0.0065 26.7 10.2 93 254-356 144-241 (319)
446 cd08301 alcohol_DH_plants Plan 36.5 1.7E+02 0.0037 29.9 8.6 93 255-356 189-290 (369)
447 PRK06522 2-dehydropantoate 2-r 36.5 2.6E+02 0.0057 27.5 9.8 94 256-357 2-102 (304)
448 COG1255 Uncharacterized protei 36.4 1E+02 0.0022 27.3 5.7 79 254-346 14-95 (129)
449 cd08246 crotonyl_coA_red croto 36.1 2.5E+02 0.0054 29.0 9.9 92 255-356 195-316 (393)
450 COG0686 Ald Alanine dehydrogen 35.7 83 0.0018 32.6 5.8 98 253-353 167-266 (371)
451 TIGR00936 ahcY adenosylhomocys 35.6 1.1E+02 0.0024 32.6 7.1 88 254-357 195-284 (406)
452 PF01555 N6_N4_Mtase: DNA meth 35.4 23 0.00051 33.0 1.9 23 335-357 36-58 (231)
453 PRK09548 PTS system ascorbate- 35.2 1E+02 0.0022 34.6 7.0 58 253-325 505-562 (602)
454 PLN02514 cinnamyl-alcohol dehy 35.1 1.5E+02 0.0032 30.4 7.9 93 255-356 182-276 (357)
455 PRK05476 S-adenosyl-L-homocyst 34.9 1.1E+02 0.0024 32.8 7.1 89 254-358 212-302 (425)
456 cd08289 MDR_yhfp_like Yhfp put 34.8 1.9E+02 0.0041 28.5 8.5 92 255-356 148-244 (326)
457 PRK08507 prephenate dehydrogen 34.8 1.5E+02 0.0033 29.3 7.7 85 256-352 2-88 (275)
458 PRK10083 putative oxidoreducta 34.3 2.1E+02 0.0045 28.6 8.7 93 255-356 162-260 (339)
459 PF05206 TRM13: Methyltransfer 33.8 55 0.0012 32.7 4.3 35 254-288 19-57 (259)
460 PF08139 LPAM_1: Prokaryotic m 33.1 36 0.00079 21.7 1.8 18 62-79 6-23 (25)
461 TIGR00518 alaDH alanine dehydr 33.0 61 0.0013 34.0 4.7 97 254-354 167-266 (370)
462 PRK03659 glutathione-regulated 32.9 87 0.0019 35.0 6.2 95 255-357 401-500 (601)
463 KOG1227 Putative methyltransfe 32.7 36 0.00077 35.0 2.7 97 255-359 196-301 (351)
464 cd08274 MDR9 Medium chain dehy 32.7 2.1E+02 0.0046 28.6 8.5 89 255-355 179-273 (350)
465 TIGR00027 mthyl_TIGR00027 meth 32.5 5E+02 0.011 25.7 10.9 101 254-357 82-199 (260)
466 PRK10309 galactitol-1-phosphat 32.5 2.2E+02 0.0048 28.7 8.6 93 255-356 162-261 (347)
467 cd08240 6_hydroxyhexanoate_dh_ 31.4 2E+02 0.0043 29.0 8.1 90 255-356 177-275 (350)
468 PRK12921 2-dehydropantoate 2-r 30.9 2.5E+02 0.0055 27.7 8.7 93 256-356 2-103 (305)
469 cd05286 QOR2 Quinone oxidoredu 30.6 3.9E+02 0.0084 25.6 9.8 91 255-356 138-236 (320)
470 cd05289 MDR_like_2 alcohol deh 30.6 4.2E+02 0.0091 25.4 10.0 88 255-355 146-238 (309)
471 COG1580 FliL Flagellar basal b 30.3 24 0.00052 32.7 1.0 35 51-85 8-42 (159)
472 cd01842 SGNH_hydrolase_like_5 30.3 92 0.002 29.5 4.8 46 313-358 46-102 (183)
473 cd08297 CAD3 Cinnamyl alcohol 29.4 2.6E+02 0.0057 27.9 8.6 92 255-355 167-265 (341)
474 cd08265 Zn_ADH3 Alcohol dehydr 28.4 2.9E+02 0.0063 28.5 8.9 91 255-356 205-308 (384)
475 COG3414 SgaB Phosphotransferas 28.1 1.3E+02 0.0028 25.3 4.9 51 260-324 6-56 (93)
476 cd08296 CAD_like Cinnamyl alco 28.0 3.3E+02 0.0071 27.3 9.0 91 255-356 165-260 (333)
477 cd08286 FDH_like_ADH2 formalde 27.5 3.1E+02 0.0068 27.4 8.7 89 255-355 168-266 (345)
478 PRK08306 dipicolinate synthase 27.4 1.9E+02 0.0041 29.3 7.0 87 254-354 152-240 (296)
479 cd08235 iditol_2_DH_like L-idi 27.2 3.5E+02 0.0076 26.9 9.0 92 255-356 167-266 (343)
480 PRK05708 2-dehydropantoate 2-r 26.4 4.2E+02 0.009 26.7 9.3 97 255-359 3-108 (305)
481 PLN02702 L-idonate 5-dehydroge 26.4 4.6E+02 0.01 26.6 9.8 93 255-356 183-286 (364)
482 cd08260 Zn_ADH6 Alcohol dehydr 26.2 3.5E+02 0.0076 27.0 8.8 92 255-356 167-265 (345)
483 TIGR00872 gnd_rel 6-phosphoglu 26.0 2.1E+02 0.0046 28.7 7.1 87 256-352 2-90 (298)
484 TIGR02819 fdhA_non_GSH formald 25.6 4.9E+02 0.011 27.2 10.0 99 255-357 187-301 (393)
485 KOG0023 Alcohol dehydrogenase, 25.4 74 0.0016 33.0 3.5 98 255-359 183-283 (360)
486 PF11312 DUF3115: Protein of u 25.3 73 0.0016 32.8 3.5 24 335-358 222-245 (315)
487 PLN02494 adenosylhomocysteinas 25.2 1.8E+02 0.0039 31.8 6.6 89 254-357 254-343 (477)
488 PRK10669 putative cation:proto 25.2 1.2E+02 0.0027 33.3 5.6 92 255-355 418-515 (558)
489 KOG3924 Putative protein methy 25.0 3.5E+02 0.0075 28.9 8.4 123 226-359 172-312 (419)
490 PF02558 ApbA: Ketopantoate re 24.8 1.4E+02 0.003 26.3 4.9 94 258-359 2-105 (151)
491 PLN02256 arogenate dehydrogena 24.5 3.1E+02 0.0067 27.9 8.0 82 255-349 37-121 (304)
492 PTZ00354 alcohol dehydrogenase 24.2 4E+02 0.0087 26.1 8.7 91 255-355 142-240 (334)
493 cd08244 MDR_enoyl_red Possible 23.8 5.3E+02 0.012 25.1 9.5 92 255-356 144-242 (324)
494 PRK09422 ethanol-active dehydr 23.4 3.2E+02 0.0069 27.2 7.9 91 255-355 164-261 (338)
495 PF14258 DUF4350: Domain of un 23.4 2.2E+02 0.0048 21.8 5.3 19 336-354 51-69 (70)
496 cd05280 MDR_yhdh_yhfp Yhdh and 23.1 3.5E+02 0.0075 26.5 8.0 92 255-356 148-244 (325)
497 cd08282 PFDH_like Pseudomonas 22.6 5.6E+02 0.012 26.2 9.6 98 255-356 178-286 (375)
498 COG4920 Predicted membrane pro 22.5 40 0.00086 32.6 0.9 67 44-113 19-85 (249)
499 PF03686 UPF0146: Uncharacteri 22.4 1.6E+02 0.0035 26.3 4.7 86 255-357 15-104 (127)
500 KOG1209 1-Acyl dihydroxyaceton 22.1 4.1E+02 0.0089 26.3 7.7 69 253-324 6-88 (289)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=2.9e-73 Score=589.18 Aligned_cols=323 Identities=39% Similarity=0.821 Sum_probs=301.3
Q ss_pred CccCcCCchhhhhc--ccccchhhhcCCCC-CCccccccCCCCCCCCCCCCCCCCcccccccccchhHHhhhccccchhh
Q 011964 134 NYVPCFNESRNLAL--GYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRM 210 (474)
Q Consensus 134 ~y~pC~d~~~~~~~--~~~~~~~~~r~c~~-~~r~rcl~~~p~gy~~P~~Wp~srd~~w~~nvp~~~~~~l~~~~~~q~W 210 (474)
|||||+|+++++++ .+++++|+|||||+ +++.+||||+|.|||.|++||+|||++|++|+||++ |+.+|..|||
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~---L~~~K~~qnW 77 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTK---LAEEKADQNW 77 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchH---Hhhhcccccc
Confidence 79999999999998 89999999999999 669999999999999999999999999999999999 6689999999
Q ss_pred hcchhhhhccccccccc-cchhhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHH
Q 011964 211 MMLEEEQISFRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS 289 (474)
Q Consensus 211 ~~~e~~~~~F~~~~~~y-d~~~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~ 289 (474)
++.+++.+.|++++++| +++.+|++.|.++++... .....+++||||||+|+|+.+|.++++.+++++..|.++.
T Consensus 78 v~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~----~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~ 153 (506)
T PF03141_consen 78 VRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIK----WGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEA 153 (506)
T ss_pred eeecCCEEEeCCCCccccCCHHHHHHHHHHHhhccc----cCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCch
Confidence 99999999999999999 689999999999998621 1236789999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHH
Q 011964 290 QVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN 369 (474)
Q Consensus 290 ~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~ 369 (474)
++++|.+||+++.+..+..++|||++++||+|||+.|+..|..+...+|.|++|+|||||+|+++.|+.+. ...++.
T Consensus 154 qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~---r~~~~~ 230 (506)
T PF03141_consen 154 QVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQ---RTDEDL 230 (506)
T ss_pred hhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccc---cchHHH
Confidence 99999999999999888889999999999999999999999888889999999999999999999998772 244577
Q ss_pred HHHHHHHHHHHHhhCceEEeeecceeEEeecCCCcccccCCCCCCCCcccCCCCCCCCcccCCCCcccccCCC-cccCcc
Q 011964 370 QKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNR-RWIPIE 448 (474)
Q Consensus 370 ~~~w~~~~~la~~l~W~~~~~~~~~~iw~k~~~~~C~~~R~~~~~p~lc~~~~~~d~~wY~~l~~ci~~~~~~-~~~~~~ 448 (474)
.+.|..|+++++++||++++++.+++||+|+.+++|+.+|.....|++|+.++++|++||++|++||++.|+. .+++++
T Consensus 231 ~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~ 310 (506)
T PF03141_consen 231 EEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGG 310 (506)
T ss_pred HHHHHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCccccccccc
Confidence 8999999999999999999999999999999988999999987889999999999999999999999999854 578899
Q ss_pred ccCCCCcccccCCchhhh
Q 011964 449 ERRNWPSRANLNKNELAV 466 (474)
Q Consensus 449 ~~~~wp~r~~~~~~~~~~ 466 (474)
.+++||+||+++|+||..
T Consensus 311 ~~~~WP~RL~~~P~rl~~ 328 (506)
T PF03141_consen 311 WLPKWPERLNAVPPRLSS 328 (506)
T ss_pred CCCCChhhhccCchhhhc
Confidence 999999999999999986
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.78 E-value=1.8e-18 Score=168.39 Aligned_cols=120 Identities=22% Similarity=0.282 Sum_probs=100.8
Q ss_pred hhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCC-----cEEEee
Q 011964 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP-----AMIGSF 306 (474)
Q Consensus 232 ~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~-----~~~~~~ 306 (474)
.+.+.+.+.+...++ .+|||||||||.++..+++... ...++++|+|+.|++.|+++..+ +.+..+
T Consensus 38 ~Wr~~~i~~~~~~~g--------~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~ 108 (238)
T COG2226 38 LWRRALISLLGIKPG--------DKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVG 108 (238)
T ss_pred HHHHHHHHhhCCCCC--------CEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEe
Confidence 344445555444433 8999999999999999998843 67999999999999999988443 678999
Q ss_pred cccCCCCCCCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeCCCCch
Q 011964 307 ASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQ 361 (474)
Q Consensus 307 d~~~Lpf~d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~ 361 (474)
|++.|||+|++||+|.+++.+.+. ++.+.+|+|++|||||||.+++.+......
T Consensus 109 dAe~LPf~D~sFD~vt~~fglrnv-~d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 109 DAENLPFPDNSFDAVTISFGLRNV-TDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred chhhCCCCCCccCEEEeeehhhcC-CCHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 999999999999999999986555 789999999999999999999999876543
No 3
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.73 E-value=1.1e-17 Score=163.44 Aligned_cols=106 Identities=24% Similarity=0.331 Sum_probs=80.6
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----C-CCcEEEeecccCCCCCCCCeeEEEeccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g-~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~ 328 (474)
+.+|||+|||||.++..++++......++++|+|+.|++.|+++ + .++.+..+|++++||++++||+|+|++.+.
T Consensus 48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglr 127 (233)
T PF01209_consen 48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLR 127 (233)
T ss_dssp --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GG
T ss_pred CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHH
Confidence 37999999999999999988743456899999999999999876 2 367889999999999999999999999866
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~ 360 (474)
++ +|...+|+|++|||||||.+++.+.....
T Consensus 128 n~-~d~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 128 NF-PDRERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp G--SSHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred hh-CCHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 66 77889999999999999999999875543
No 4
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.73 E-value=2.6e-18 Score=160.90 Aligned_cols=145 Identities=20% Similarity=0.317 Sum_probs=115.8
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc-----CCCcE-EEeecccCCC-CCCCCeeEEEeccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAM-IGSFASKQLP-YPSLSFDMLHCARC 326 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er-----g~~~~-~~~~d~~~Lp-f~d~sFDlVvss~~ 326 (474)
...|||||||||.+..++... +..+|+.+|+++.|-+++.++ ...+. +++++.+++| ++|+|+|+|+|+++
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred ccceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 356899999999999988744 346899999999998877543 33444 7889999999 99999999999999
Q ss_pred cccccccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEeeecceeEEeecCCCccc
Q 011964 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCY 406 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~~~~~~~iw~k~~~~~C~ 406 (474)
++.. .++.+.|+|+.|+|||||.+++.+|+.... .+|.. +.++...+.|+-..+ ||+
T Consensus 155 LCSv-e~~~k~L~e~~rlLRpgG~iifiEHva~~y---------~~~n~------------i~q~v~ep~~~~~~d-GC~ 211 (252)
T KOG4300|consen 155 LCSV-EDPVKQLNEVRRLLRPGGRIIFIEHVAGEY---------GFWNR------------ILQQVAEPLWHLESD-GCV 211 (252)
T ss_pred Eecc-CCHHHHHHHHHHhcCCCcEEEEEecccccc---------hHHHH------------HHHHHhchhhheecc-ceE
Confidence 8888 788999999999999999999999987542 22322 224445566777776 999
Q ss_pred ccCCCCCCCCcccCCCCCC
Q 011964 407 SSRKPGSGPSICSKGNDVE 425 (474)
Q Consensus 407 ~~R~~~~~p~lc~~~~~~d 425 (474)
++|++.+. +.++.+..+
T Consensus 212 ltrd~~e~--Leda~f~~~ 228 (252)
T KOG4300|consen 212 LTRDTGEL--LEDAEFSID 228 (252)
T ss_pred EehhHHHH--hhhcccccc
Confidence 99999988 777777543
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.72 E-value=1.1e-16 Score=158.91 Aligned_cols=106 Identities=20% Similarity=0.158 Sum_probs=89.8
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC--------CCcEEEeecccCCCCCCCCeeEEEecc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--------LPAMIGSFASKQLPYPSLSFDMLHCAR 325 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg--------~~~~~~~~d~~~Lpf~d~sFDlVvss~ 325 (474)
..+|||||||+|.++..+++.......++++|+|++|++.|+++. .++.+..++++.+|+++++||+|++++
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~ 153 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY 153 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence 378999999999999988876212358999999999999997652 246788889999999999999999998
Q ss_pred ccccccccHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 011964 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (474)
Q Consensus 326 ~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~ 360 (474)
+++++ +++..+++|++|+|||||++++.+.....
T Consensus 154 ~l~~~-~d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 154 GLRNV-VDRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred ccccC-CCHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 86655 78889999999999999999999986543
No 6
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.69 E-value=8.8e-17 Score=132.17 Aligned_cols=93 Identities=30% Similarity=0.449 Sum_probs=79.4
Q ss_pred EEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCC--cEEEeecccCCCCCCCCeeEEEeccccccccccHH
Q 011964 258 LDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP--AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDG 335 (474)
Q Consensus 258 LDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~--~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d~~ 335 (474)
||+|||+|.++..++++ ...+++++|+++.+++.++++... ..+...+.+.+|+++++||+|++..+++++ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-SHHH
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-cCHH
Confidence 89999999999999998 337899999999999999987543 448888999999999999999999886666 8888
Q ss_pred HHHHHHHhhcCCCcEEEE
Q 011964 336 ILLLEVDRVLKPGGYFVW 353 (474)
Q Consensus 336 ~~L~ei~RvLKPGG~lvi 353 (474)
.+++|+.|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 7
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.68 E-value=3.2e-16 Score=153.88 Aligned_cols=134 Identities=19% Similarity=0.282 Sum_probs=108.3
Q ss_pred ccccccccccchhhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC
Q 011964 219 SFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG 298 (474)
Q Consensus 219 ~F~~~~~~yd~~~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg 298 (474)
.|++.+..|+.....++.+.+.+..... .....+|||+|||+|.++..+++.+ ..++++|+|+.|++.|+++.
T Consensus 12 ~F~~aa~~Y~~~~~~q~~~a~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 12 AFGRAAAHYEQHAELQRQSADALLAMLP----QRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHhcC----ccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhC
Confidence 5888777887666666655555432111 1234789999999999999998764 57999999999999999886
Q ss_pred CCcEEEeecccCCCCCCCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 011964 299 LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (474)
Q Consensus 299 ~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~ 360 (474)
....+..+|++.+|+++++||+|+++.+ ++|..++..+|.++.|+|||||.++++.+....
T Consensus 85 ~~~~~~~~d~~~~~~~~~~fD~V~s~~~-l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 145 (251)
T PRK10258 85 AADHYLAGDIESLPLATATFDLAWSNLA-VQWCGNLSTALRELYRVVRPGGVVAFTTLVQGS 145 (251)
T ss_pred CCCCEEEcCcccCcCCCCcEEEEEECch-hhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 5566778899999999999999999876 667788899999999999999999999987654
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.58 E-value=2.9e-14 Score=141.60 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=113.8
Q ss_pred HHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCC---CcEEEeecccC
Q 011964 234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQ 310 (474)
Q Consensus 234 ~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~---~~~~~~~d~~~ 310 (474)
...+.+.+...++ .+|||||||+|..+..+++.. ...++++|+++.|++.|+++.. .+.+..+|+..
T Consensus 41 ~~~~l~~l~l~~~--------~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~ 110 (263)
T PTZ00098 41 TTKILSDIELNEN--------SKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILK 110 (263)
T ss_pred HHHHHHhCCCCCC--------CEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCccc
Confidence 4455555555444 789999999999999987652 3589999999999999987632 46677788888
Q ss_pred CCCCCCCeeEEEecccccccc-ccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHH----------HHHHHHHH
Q 011964 311 LPYPSLSFDMLHCARCGVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQK----------RWNFVRDF 379 (474)
Q Consensus 311 Lpf~d~sFDlVvss~~l~~~~-~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~----------~w~~~~~l 379 (474)
.|+++++||+|++..+++|+. .+...++++++++|||||+|+++++......... ..... .-..+..+
T Consensus 111 ~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 189 (263)
T PTZ00098 111 KDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWD-EEFKAYIKKRKYTLIPIQEYGDL 189 (263)
T ss_pred CCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcH-HHHHHHHHhcCCCCCCHHHHHHH
Confidence 899999999999988777774 3677999999999999999999987553311101 10100 12456677
Q ss_pred HHhhCceEEeeecceeEEeec
Q 011964 380 VENLCWELVSQQDETVVWKKT 400 (474)
Q Consensus 380 a~~l~W~~~~~~~~~~iw~k~ 400 (474)
++..+|+.+...+.+..|...
T Consensus 190 l~~aGF~~v~~~d~~~~~~~~ 210 (263)
T PTZ00098 190 IKSCNFQNVVAKDISDYWLEL 210 (263)
T ss_pred HHHCCCCeeeEEeCcHHHHHH
Confidence 888888877766555555433
No 9
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.57 E-value=1.8e-14 Score=139.20 Aligned_cols=108 Identities=20% Similarity=0.157 Sum_probs=91.7
Q ss_pred cccCCceEEEECCCCchHHHHhhhcC-----CceeEEEEecCCHHHHHHHHHcC----C----CcEEEeecccCCCCCCC
Q 011964 250 ILAGVRTILDIGCGYGSFGAHLFSKE-----LLTMCIANYEASGSQVQLTLERG----L----PAMIGSFASKQLPYPSL 316 (474)
Q Consensus 250 ~~~~~~~VLDIGCGtG~~~~~La~~g-----~~~~~v~giD~s~~~l~~A~erg----~----~~~~~~~d~~~Lpf~d~ 316 (474)
.+....++||++||||..+..+.+.- .....|+..|+++.|+..+++|. + ...+..+|+++|||+++
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~ 176 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDD 176 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCC
Confidence 34456899999999999999998762 22268999999999998887663 2 25688889999999999
Q ss_pred CeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 317 SFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 317 sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
+||+..+++.+-.+ .+++++|+|++|||||||+|.+.++..
T Consensus 177 s~D~yTiafGIRN~-th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNV-THIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred cceeEEEecceecC-CCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 99999999887777 788999999999999999999998754
No 10
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.57 E-value=3.2e-14 Score=128.59 Aligned_cols=127 Identities=26% Similarity=0.468 Sum_probs=93.9
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d 333 (474)
..+|||||||+|.++..+.+.+. +++++|+++.+++. ........+....+.++++||+|+|+.+++|+ ++
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~-~d 93 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHL-PD 93 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGS-SH
T ss_pred CCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhhc-cc
Confidence 47999999999999999988764 89999999999987 33334444444556788899999999886666 68
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeCCCCch------hhh-hhH--HH--HHHHHHHHHHHHhhCceEEe
Q 011964 334 DGILLLEVDRVLKPGGYFVWTSPLTNPQ------AFL-RNK--EN--QKRWNFVRDFVENLCWELVS 389 (474)
Q Consensus 334 ~~~~L~ei~RvLKPGG~lvis~~~~~~~------~~~-~~~--e~--~~~w~~~~~la~~l~W~~~~ 389 (474)
+..+|+++.++|||||+++++++..... .+. ... .. .-.-..++.++++.+|+.+.
T Consensus 94 ~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 8999999999999999999999875320 000 000 00 11125667778888877764
No 11
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.57 E-value=9e-14 Score=141.80 Aligned_cols=103 Identities=15% Similarity=0.143 Sum_probs=89.0
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC------CCcEEEeecccCCCCCCCCeeEEEeccc
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARC 326 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg------~~~~~~~~d~~~Lpf~d~sFDlVvss~~ 326 (474)
...+|||||||+|.++..|++.+ ..++++|+++.|++.|+++. ..+.+..++++++++++++||+|+|..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 34689999999999999998765 47999999999999998652 1466788888899988899999999998
Q ss_pred cccccccHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
++|+ .++..+++++.++|||||.++++++...
T Consensus 208 LeHv-~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 208 IEHV-ANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred HHhc-CCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 7666 7888999999999999999999987654
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.55 E-value=3.5e-14 Score=146.04 Aligned_cols=103 Identities=21% Similarity=0.302 Sum_probs=88.6
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCeeEEEeccc
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlVvss~~ 326 (474)
...+|||||||+|.++..+++.. ...++++|+++.|++.|+++ ++ ++.+..+|+..+|+++++||+|++..+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 34789999999999999999862 35899999999999887654 33 467888899999999999999999988
Q ss_pred cccccccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
++|+ .+...+++++.|+|||||.|++.+...
T Consensus 196 ~~h~-~d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 196 GEHM-PDKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred hhcc-CCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 7776 678899999999999999999987643
No 13
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.55 E-value=2e-13 Score=132.08 Aligned_cols=104 Identities=21% Similarity=0.222 Sum_probs=86.6
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCeeEEEecccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~ 329 (474)
.+|||+|||+|.++..+++.......++++|+++.+++.|+++ +. ++.+..+|...+++++++||+|++..++.
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~- 125 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFGLR- 125 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecccc-
Confidence 7999999999999999987632345899999999999888765 22 45677788888899899999999987744
Q ss_pred ccccHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 330 WDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 330 ~~~d~~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
+.++...+++++.++|||||++++.++...
T Consensus 126 ~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 126 NVPDYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred cCCCHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 447788999999999999999999886543
No 14
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.54 E-value=3.7e-14 Score=139.81 Aligned_cols=99 Identities=22% Similarity=0.325 Sum_probs=83.3
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d 333 (474)
..+|||||||+|.++..+++.. ....++++|+|+.|++.|++++ +.+..+|++.++ ++++||+|+|+.++ ||.++
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~~--~~~~~~d~~~~~-~~~~fD~v~~~~~l-~~~~d 104 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARERG--VDARTGDVRDWK-PKPDTDVVVSNAAL-QWVPE 104 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhcC--CcEEEcChhhCC-CCCCceEEEEehhh-hhCCC
Confidence 3799999999999999998873 3468999999999999998875 455667777774 56799999999884 45578
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 334 DGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 334 ~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
+..++++++++|||||++++..+.
T Consensus 105 ~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 105 HADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred HHHHHHHHHHhCCCCcEEEEEcCC
Confidence 889999999999999999998654
No 15
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.53 E-value=1.6e-13 Score=140.73 Aligned_cols=142 Identities=17% Similarity=0.157 Sum_probs=108.9
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC--CCcEEEeecccCCCCCCCCeeEEEecccccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg--~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~ 331 (474)
..+|||||||+|.++..+++.. ....++++|.++.|++.|+++. .++.+..+|++.+++++++||+|++..+++++
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~- 191 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW- 191 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC-
Confidence 3689999999999998887752 2357999999999999998763 24567788889999999999999999886665
Q ss_pred ccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHH------HHHHHHHHHHhhCceEEeeecceeEEee
Q 011964 332 QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQK------RWNFVRDFVENLCWELVSQQDETVVWKK 399 (474)
Q Consensus 332 ~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~------~w~~~~~la~~l~W~~~~~~~~~~iw~k 399 (474)
.+.+.+|++++|+|||||.+++.++.... .+... .... .-+++.+++++.+|+.+......+.|.+
T Consensus 192 ~d~~~~L~e~~rvLkPGG~LvIi~~~~p~-~~~~r-~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~i~~~~~~ 263 (340)
T PLN02490 192 PDPQRGIKEAYRVLKIGGKACLIGPVHPT-FWLSR-FFADVWMLFPKEEEYIEWFTKAGFKDVKLKRIGPKWYR 263 (340)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEEecCcc-hhHHH-HhhhhhccCCCHHHHHHHHHHCCCeEEEEEEcChhhcc
Confidence 67788999999999999999998765322 11111 0111 2356778889999998887766666655
No 16
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.53 E-value=1.9e-14 Score=138.84 Aligned_cols=104 Identities=18% Similarity=0.300 Sum_probs=91.6
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCeeEEEecccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~ 329 (474)
..+|||||||-|.++..|++.| ..|+|+|.++.+++.|+.+ ++.+.+....++++-...++||+|+|..++.|
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 3789999999999999999998 5899999999999998754 56666777777888777789999999999777
Q ss_pred ccccHHHHHHHHHhhcCCCcEEEEEeCCCCch
Q 011964 330 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQ 361 (474)
Q Consensus 330 ~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~ 361 (474)
. ++++.+++.+.+++||||.+++++++....
T Consensus 137 v-~dp~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 137 V-PDPESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred c-CCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 7 889999999999999999999999986653
No 17
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.52 E-value=2.9e-13 Score=132.12 Aligned_cols=104 Identities=15% Similarity=0.129 Sum_probs=84.1
Q ss_pred CceEEEECCCCchHHHHhhhcC-CceeEEEEecCCHHHHHHHHHc------CCCcEEEeecccCCCCCCCCeeEEEeccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQLPYPSLSFDMLHCARC 326 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g-~~~~~v~giD~s~~~l~~A~er------g~~~~~~~~d~~~Lpf~d~sFDlVvss~~ 326 (474)
..+|||||||+|.++..+++.. .+...++++|+|+.|++.|+++ ..++.+..+|+..++++ .+|+|+++.+
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~ 131 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNFT 131 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeecc
Confidence 3689999999999999988752 2346899999999999999765 22467788888888876 4899999888
Q ss_pred cccccc-cHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 327 GVDWDQ-KDGILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 327 l~~~~~-d~~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
++++.+ +...++++++|+|||||.|+++++...
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 665532 346899999999999999999997654
No 18
>PRK05785 hypothetical protein; Provisional
Probab=99.52 E-value=5.6e-14 Score=136.61 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=77.3
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d 333 (474)
..+|||||||||.++..+++.. ...++|+|+|+.|++.|+++. ...+++++.+|+++++||+|++++++++ ..+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~l~~-~~d 125 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFALHA-SDN 125 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecChhhc-cCC
Confidence 3689999999999999998873 258999999999999998753 3456788999999999999999998654 478
Q ss_pred HHHHHHHHHhhcCCC
Q 011964 334 DGILLLEVDRVLKPG 348 (474)
Q Consensus 334 ~~~~L~ei~RvLKPG 348 (474)
++.+++|++|+|||.
T Consensus 126 ~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 126 IEKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHHHHHHHhcCc
Confidence 899999999999994
No 19
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.52 E-value=1.1e-13 Score=137.95 Aligned_cols=99 Identities=25% Similarity=0.351 Sum_probs=82.9
Q ss_pred CceEEEECCCCchHHHHhhhcCCc--eeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELL--TMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~--~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~ 331 (474)
..+|||||||+|.++..+++.... ...++|+|+|+.|++.|.++..++.+.++++..+|+++++||+|++.++
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~----- 160 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA----- 160 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC-----
Confidence 368999999999999998765211 1368999999999999998877788888899999999999999998653
Q ss_pred ccHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 011964 332 QKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (474)
Q Consensus 332 ~d~~~~L~ei~RvLKPGG~lvis~~~~~~ 360 (474)
...+.++.|+|||||+|++..+....
T Consensus 161 ---~~~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 161 ---PCKAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred ---CCCHHHHHhhccCCCEEEEEeCCCcc
Confidence 12468999999999999999887654
No 20
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.52 E-value=1e-13 Score=133.37 Aligned_cols=105 Identities=23% Similarity=0.351 Sum_probs=89.5
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCC-CcEEEeecccCCCCCCCCeeEEEeccccccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~-~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~ 332 (474)
+.+|||||||+|.++..+++.+ ....++++|+++.+++.++++.. ++.+..+|...+++++++||+|++..+ +++..
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~-l~~~~ 112 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLA-LQWCD 112 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhh-hhhcc
Confidence 4689999999999999998875 34578999999999998887643 456777888899999999999999988 45557
Q ss_pred cHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 011964 333 KDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (474)
Q Consensus 333 d~~~~L~ei~RvLKPGG~lvis~~~~~~ 360 (474)
+...++.++.++|||||.+++.++....
T Consensus 113 ~~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 113 DLSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 8889999999999999999999876654
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.49 E-value=3.1e-13 Score=128.61 Aligned_cols=97 Identities=18% Similarity=0.270 Sum_probs=77.9
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCCCCCCCeeEEEecccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~-~~~~~~d~~~Lpf~d~sFDlVvss~~l~~ 329 (474)
.+|||+|||+|.++..|++++ .+|+++|+|+.|++.++++ ++. +.+...|...++++ ++||+|+|+.++++
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 107 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLMF 107 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchhh
Confidence 689999999999999999985 4899999999999887653 333 55666777777775 57999999988655
Q ss_pred ccc-cHHHHHHHHHhhcCCCcEEEEEe
Q 011964 330 WDQ-KDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 330 ~~~-d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
+.+ +...+++++.++|||||++++.+
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 432 45689999999999999966543
No 22
>PRK08317 hypothetical protein; Provisional
Probab=99.49 E-value=1.1e-12 Score=125.90 Aligned_cols=117 Identities=26% Similarity=0.364 Sum_probs=94.2
Q ss_pred hHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecc
Q 011964 233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFAS 308 (474)
Q Consensus 233 ~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~~~~~~d~ 308 (474)
+.+.+.+.+...++ .+|||+|||+|.++..+++.......++++|+++.+++.++++ ...+.+...+.
T Consensus 7 ~~~~~~~~~~~~~~--------~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~ 78 (241)
T PRK08317 7 YRARTFELLAVQPG--------DRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA 78 (241)
T ss_pred HHHHHHHHcCCCCC--------CEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc
Confidence 34445555554433 7899999999999999987632346899999999999999876 33466777788
Q ss_pred cCCCCCCCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 309 KQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 309 ~~Lpf~d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
..+++++++||+|++..++.++ .++..+++++.++|||||.+++.++..
T Consensus 79 ~~~~~~~~~~D~v~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~~~ 127 (241)
T PRK08317 79 DGLPFPDGSFDAVRSDRVLQHL-EDPARALAEIARVLRPGGRVVVLDTDW 127 (241)
T ss_pred ccCCCCCCCceEEEEechhhcc-CCHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 8888988999999999886665 778899999999999999999998754
No 23
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.48 E-value=3.1e-13 Score=133.09 Aligned_cols=101 Identities=19% Similarity=0.284 Sum_probs=85.2
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d 333 (474)
..+|||||||+|.++..+++.. ....++++|+++.|++.|+++..++.+..+|+..+. ++++||+|+++.+ ++|..+
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~-l~~~~d 108 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANAS-LQWLPD 108 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccC-hhhCCC
Confidence 4789999999999999998763 346899999999999999988666777777877664 4569999999987 556678
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 334 DGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 334 ~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
...+++++.++|||||.+++..+.
T Consensus 109 ~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 109 HLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred HHHHHHHHHHhcCCCcEEEEECCC
Confidence 889999999999999999997643
No 24
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.48 E-value=5.2e-13 Score=126.83 Aligned_cols=140 Identities=14% Similarity=0.228 Sum_probs=94.5
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCeeEEEeccccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~ 330 (474)
.+|||+|||+|.++..+++++ ..|+++|+|+.|++.++++ ++++.+...+....+++ ++||+|+++.+++++
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~~ 107 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMFL 107 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEecccccC
Confidence 689999999999999999886 4799999999999877543 55666666666656664 589999999886655
Q ss_pred c-ccHHHHHHHHHhhcCCCcEEEEEeCCCCchhh-hhhHHHHHHHHHHHHHHHhhCceEEeeecceeEEeec
Q 011964 331 D-QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAF-LRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKT 400 (474)
Q Consensus 331 ~-~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~-~~~~e~~~~w~~~~~la~~l~W~~~~~~~~~~iw~k~ 400 (474)
. .+...++++++|+|||||++++.+........ .+.........++..+.. .|+.+........|.+.
T Consensus 108 ~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~~e~~~~~~~~ 177 (195)
T TIGR00477 108 QAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKYNEAVGELHAT 177 (195)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEeeccccccccc
Confidence 3 24468999999999999997665432211100 001111222334444443 48777765555555554
No 25
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.47 E-value=1.1e-12 Score=140.37 Aligned_cols=103 Identities=21% Similarity=0.313 Sum_probs=88.1
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC----CCcEEEeecccCCCCCCCCeeEEEecccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg----~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~ 329 (474)
..+|||||||+|..+..+++.. ...++++|+|+.+++.|+++. ..+.+..+|...+++++++||+|+|..+++|
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h 344 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILH 344 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCcccc
Confidence 4789999999999999888762 358999999999999987652 2466778888888999999999999988666
Q ss_pred ccccHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 330 WDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 330 ~~~d~~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
+ .++..++++++|+|||||.+++.++...
T Consensus 345 ~-~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 345 I-QDKPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred c-CCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 6 7788999999999999999999987543
No 26
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.47 E-value=7.4e-13 Score=130.23 Aligned_cols=104 Identities=14% Similarity=0.146 Sum_probs=82.8
Q ss_pred CceEEEECCCCchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCeeEEEeccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlVvss~~ 326 (474)
..+|||||||+|..+..+++. ......++++|+|+.|++.|+++ +. ++.+..+++..+|++ .||+|+++.+
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~ 134 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFT 134 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhH
Confidence 468999999999999888763 12346899999999999999876 22 467778888888775 4999999888
Q ss_pred ccccccc-HHHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 327 GVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 327 l~~~~~d-~~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
++++.++ ...++++++++|||||.|++++....
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~ 168 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 168 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 6665332 35799999999999999999986543
No 27
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.46 E-value=3.1e-13 Score=122.76 Aligned_cols=103 Identities=24% Similarity=0.337 Sum_probs=85.8
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCC--CCCCCeeEEEecc
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCAR 325 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~Lp--f~d~sFDlVvss~ 325 (474)
+..+|||+|||+|.++..+++.-.....++++|+++.|++.|+++ +. ++.+.+.|+.+++ ++ +.||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 347899999999999999995322346799999999999999874 44 4788889998887 66 7999999997
Q ss_pred ccccccccHHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 326 ~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
++ ++..+...+++++.++|++||.+++.++.
T Consensus 82 ~l-~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VL-HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TG-GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ch-hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 75 44477788999999999999999999976
No 28
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.46 E-value=3.4e-13 Score=115.20 Aligned_cols=100 Identities=21% Similarity=0.275 Sum_probs=78.2
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC------CCcEEEeecc-cCCCCCCCCeeEEEecc-c
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFAS-KQLPYPSLSFDMLHCAR-C 326 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg------~~~~~~~~d~-~~Lpf~d~sFDlVvss~-~ 326 (474)
.+|||||||+|.++..+++.. ....++++|+++.|++.|+++. .++.+...|+ ...... +.||+|++.. +
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~~ 80 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGFT 80 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSGS
T ss_pred CEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCCc
Confidence 689999999999999999931 2357999999999999988763 4677888887 333333 4699999998 4
Q ss_pred ccccc--ccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 327 GVDWD--QKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 327 l~~~~--~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
..++. ++...+++++.+.|+|||++++.++
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 33232 3456899999999999999999864
No 29
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.46 E-value=9.3e-13 Score=134.58 Aligned_cols=100 Identities=21% Similarity=0.242 Sum_probs=83.4
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHH--Hc----CCCcEEEeecccCCCCCCCCeeEEEecccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL--ER----GLPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~--er----g~~~~~~~~d~~~Lpf~d~sFDlVvss~~l 327 (474)
.++|||||||+|.++..+++.+. ..|+|+|+|+.|+..++ ++ ..++.+..++++.+|+ +++||+|+|..++
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl 199 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVL 199 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChh
Confidence 37999999999999999998864 36999999999886433 22 2356778888899998 7899999999886
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
+|. .++..+|++++++|||||.+++.+..
T Consensus 200 ~H~-~dp~~~L~~l~~~LkpGG~lvl~~~~ 228 (322)
T PRK15068 200 YHR-RSPLDHLKQLKDQLVPGGELVLETLV 228 (322)
T ss_pred hcc-CCHHHHHHHHHHhcCCCcEEEEEEEE
Confidence 665 78889999999999999999998654
No 30
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.46 E-value=4.2e-13 Score=132.44 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=85.4
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCC-CCCCCeeEEEecc
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP-YPSLSFDMLHCAR 325 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~Lp-f~d~sFDlVvss~ 325 (474)
...+|||||||+|.++..+++.+ ..++++|+|+.|++.|+++ ++ ++.+..+++..++ +++++||+|++..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 34699999999999999999885 4799999999999998865 32 3567777777764 6778999999998
Q ss_pred ccccccccHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 326 ~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
+++++ .++..++.++.++|||||++++..+...
T Consensus 121 vl~~~-~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 121 VLEWV-ADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred HHHhh-CCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 85544 7788999999999999999998876543
No 31
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.44 E-value=2.1e-12 Score=128.44 Aligned_cols=104 Identities=20% Similarity=0.190 Sum_probs=85.1
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCeeEEEeccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlVvss~~l~ 328 (474)
..+|||||||+|..+..+++.-.....++++|+++.|++.|+++ +. ++.+..++++.+|+++++||+|++..+ +
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v-~ 156 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV-I 156 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc-c
Confidence 37999999999998877665422234799999999999999875 33 456777888899999999999999866 4
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
++..+...+++++.|+|||||+|++++...
T Consensus 157 ~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 157 NLSPDKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred cCCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 555777889999999999999999988654
No 32
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.42 E-value=1.6e-12 Score=132.14 Aligned_cols=132 Identities=15% Similarity=0.170 Sum_probs=95.1
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHH--c----CCCcEEEeecccCCCCCCCCeeEEEecccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE--R----GLPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~e--r----g~~~~~~~~d~~~Lpf~d~sFDlVvss~~l 327 (474)
.++|||||||+|.++..++..+. ..++|+|+|+.|+..+.. + ...+.+..++++++|.. .+||+|+|+.++
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gvL 198 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGVL 198 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcchh
Confidence 47999999999999999988764 478999999999865421 1 12455666778888765 489999999987
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEeCCCCchhh---hhhHHH--------HHHHHHHHHHHHhhCceEEe
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAF---LRNKEN--------QKRWNFVRDFVENLCWELVS 389 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~---~~~~e~--------~~~w~~~~~la~~l~W~~~~ 389 (474)
+|+ .++..+|++++|+|||||.|++.+........ .+.... ...-..+..++++.||+.+.
T Consensus 199 ~H~-~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~ 270 (314)
T TIGR00452 199 YHR-KSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFR 270 (314)
T ss_pred hcc-CCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEE
Confidence 776 78889999999999999999998754321110 000000 00124566778888888765
No 33
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.41 E-value=3.1e-13 Score=114.30 Aligned_cols=93 Identities=25% Similarity=0.393 Sum_probs=74.3
Q ss_pred EEEECCCCchHHHHhhhcC--CceeEEEEecCCHHHHHHHHHcC----CCcEEEeecccCCCCCCCCeeEEEeccc-ccc
Q 011964 257 ILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCARC-GVD 329 (474)
Q Consensus 257 VLDIGCGtG~~~~~La~~g--~~~~~v~giD~s~~~l~~A~erg----~~~~~~~~d~~~Lpf~d~sFDlVvss~~-l~~ 329 (474)
|||+|||+|..+..+.+.. .....++++|+++.|++.++++. .++.+.++|..++++.+++||+|+|+.. +.|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999998763 12368999999999999998774 7889999999999998999999999655 455
Q ss_pred ccc-cHHHHHHHHHhhcCCCc
Q 011964 330 WDQ-KDGILLLEVDRVLKPGG 349 (474)
Q Consensus 330 ~~~-d~~~~L~ei~RvLKPGG 349 (474)
+.+ +...+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 432 33589999999999998
No 34
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.39 E-value=3.5e-12 Score=128.22 Aligned_cols=98 Identities=15% Similarity=0.242 Sum_probs=79.0
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCeeEEEeccccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~ 330 (474)
.+|||||||+|.++.++++.+ ..|+++|+|+.+++.++++ ++++.+...|....++ +++||+|+++.++++.
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 589999999999999999886 4899999999999877643 5666666667666555 6789999999876555
Q ss_pred c-ccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 331 D-QKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 331 ~-~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. ++...+++++.++|+|||++++...
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 3 2446899999999999999777543
No 35
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.37 E-value=2.4e-12 Score=122.03 Aligned_cols=184 Identities=17% Similarity=0.261 Sum_probs=131.4
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d 333 (474)
+++|.|+|||+|..+..|+++ .+...|+|+|.|++|++.|+++..+..+..+|+.... ++..+|+++++.+ ++|.++
T Consensus 31 ~~~v~DLGCGpGnsTelL~~R-wP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNAv-lqWlpd 107 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARR-WPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANAV-LQWLPD 107 (257)
T ss_pred cceeeecCCCCCHHHHHHHHh-CCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhhh-hhhccc
Confidence 489999999999999999998 4668899999999999999999999999988887763 4568999999866 899898
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEeeecceeEEeecC-CCcccccCCCC
Q 011964 334 DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTS-KASCYSSRKPG 412 (474)
Q Consensus 334 ~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~~~~~~~iw~k~~-~~~C~~~R~~~ 412 (474)
...+|..+...|.|||.+.+..|....+ .....|++.++...|.......-. -+++. .-.-|.+. .
T Consensus 108 H~~ll~rL~~~L~Pgg~LAVQmPdN~de---------psH~~mr~~A~~~p~~~~l~~~~~--~r~~v~s~a~Yy~l--L 174 (257)
T COG4106 108 HPELLPRLVSQLAPGGVLAVQMPDNLDE---------PSHRLMRETADEAPFAQELGGRGL--TRAPLPSPAAYYEL--L 174 (257)
T ss_pred cHHHHHHHHHhhCCCceEEEECCCccCc---------hhHHHHHHHHhcCchhhhhCcccc--ccCCCCCHHHHHHH--h
Confidence 8899999999999999999998765432 334567778877777655433211 12222 11122221 0
Q ss_pred CCCCcccCCCCCCCCcccCCCCcccccCCCcccCccccCCCCcccc
Q 011964 413 SGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRAN 458 (474)
Q Consensus 413 ~~p~lc~~~~~~d~~wY~~l~~ci~~~~~~~~~~~~~~~~wp~r~~ 458 (474)
. |.-| .-+-.++.||++|.-- .+--+|+.+..+.+|-++|.
T Consensus 175 a-~~~~-rvDiW~T~Y~h~l~~a---~aIvdWvkgTgLrP~L~~L~ 215 (257)
T COG4106 175 A-PLAC-RVDIWHTTYYHQLPGA---DAIVDWVKGTGLRPYLDRLD 215 (257)
T ss_pred C-cccc-eeeeeeeeccccCCCc---cchhhheeccccceeccccC
Confidence 0 0011 1223455677766211 01235888888898888886
No 36
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.37 E-value=7.5e-12 Score=118.40 Aligned_cols=118 Identities=18% Similarity=0.184 Sum_probs=92.9
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCeeEEEeccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlVvss~~l~ 328 (474)
..+|||||||+|..+..++... ....++++|.++.|++.|+++ ++ ++.+..+++..++. +++||+|++...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 4789999999999999888642 346899999999999888754 44 36778888888777 779999998642
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEeee
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 391 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~~~ 391 (474)
.+.+.++.+++++|||||++++...... -..+..+++..||.+..+.
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~~-------------~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRDP-------------EEEIAELPKALGGKVEEVI 168 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCCh-------------HHHHHHHHHhcCceEeeeE
Confidence 4567899999999999999999875321 2346777888899877653
No 37
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.35 E-value=7.4e-12 Score=119.97 Aligned_cols=99 Identities=16% Similarity=0.053 Sum_probs=82.0
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEeccccccccc-
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ- 332 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~- 332 (474)
..+|||||||+|.++..|++.. ....++|+|+|+.|++.|+++...+.+..+++.. |+++++||+|++..+++|+.+
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~ 121 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPD 121 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHH
Confidence 4689999999999999998762 2368999999999999999875556677777777 899999999999998877743
Q ss_pred cHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 333 KDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 333 d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
+...+++++.|++ ++++++.+.
T Consensus 122 ~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 122 NLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred HHHHHHHHHHhhc--CcEEEEEEe
Confidence 3468999999998 578888775
No 38
>PRK06922 hypothetical protein; Provisional
Probab=99.35 E-value=3e-12 Score=139.39 Aligned_cols=104 Identities=18% Similarity=0.137 Sum_probs=85.5
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCC--CCCCCeeEEEecccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHCARCG 327 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~~~~~~d~~~Lp--f~d~sFDlVvss~~l 327 (474)
..+|||||||+|.++..+++.. ....++++|+|+.|++.|+++ +.++.+..+|...+| +++++||+|+++.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 4799999999999998888763 457899999999999998765 345566777888887 889999999998776
Q ss_pred cccc------------ccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 328 VDWD------------QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 328 ~~~~------------~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
+++. .+...+|++++|+|||||.+++.+...
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 5542 244689999999999999999998643
No 39
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.35 E-value=3.1e-13 Score=113.58 Aligned_cols=92 Identities=28% Similarity=0.346 Sum_probs=58.7
Q ss_pred EEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----C-CCcEEEeecccCCC--CCCCCeeEEEeccccccc
Q 011964 258 LDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLP--YPSLSFDMLHCARCGVDW 330 (474)
Q Consensus 258 LDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g-~~~~~~~~d~~~Lp--f~d~sFDlVvss~~l~~~ 330 (474)
||||||+|.++..+.+.. ...+++++|+|+.|++.|+++ . ...........+.. ...++||+|+++.+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999998874 568999999999999766654 1 12222222222221 122599999999987666
Q ss_pred cccHHHHHHHHHhhcCCCcEE
Q 011964 331 DQKDGILLLEVDRVLKPGGYF 351 (474)
Q Consensus 331 ~~d~~~~L~ei~RvLKPGG~l 351 (474)
++...+++.++++|||||.|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 88889999999999999986
No 40
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.33 E-value=9e-12 Score=119.98 Aligned_cols=134 Identities=23% Similarity=0.296 Sum_probs=95.7
Q ss_pred eEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCeeEEEecccccc
Q 011964 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 256 ~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~ 329 (474)
+|||||||+|.++..+++.. ....++++|+|+.+++.++++ ++ .+.+...|....|++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 69999999999999998763 235799999999999988765 33 346666777666665 48999999988666
Q ss_pred ccccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhh---HHHHHHHHHHHHHHHhhCceEEeeec
Q 011964 330 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRN---KENQKRWNFVRDFVENLCWELVSQQD 392 (474)
Q Consensus 330 ~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~---~e~~~~w~~~~~la~~l~W~~~~~~~ 392 (474)
+ .+...+|+++.++|||||++++.++.......... ......-..+..+++..+|+.+....
T Consensus 80 ~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 80 I-KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred C-CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 5 67789999999999999999999875321000000 00011123445667778888776443
No 41
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.33 E-value=6.1e-11 Score=114.28 Aligned_cols=103 Identities=25% Similarity=0.249 Sum_probs=86.1
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC------CCcEEEeecccCCCCCCCCeeEEEeccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg------~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~ 328 (474)
.+|||||||+|.++..+++......+++++|+++.+++.++++. .++.+...+...+++++++||+|+++.+++
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l~ 132 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLR 132 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecccc
Confidence 68999999999999999887522468999999999999888762 245677778888888888999999988755
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
++ .+...+|.++.++|+|||.+++.+...
T Consensus 133 ~~-~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 133 NV-PDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred cC-CCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 55 678889999999999999999987644
No 42
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.33 E-value=4.1e-11 Score=114.29 Aligned_cols=104 Identities=23% Similarity=0.269 Sum_probs=86.6
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecccCCCCCCCCeeEEEeccccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg---~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~ 330 (474)
..+|||+|||+|.++..+++.......++++|+++.+++.++++. ..+.+...++..+++++++||+|+++.++++.
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~ 119 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNV 119 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeCCc
Confidence 478999999999999999887532257999999999999888764 24667778888888888899999998775544
Q ss_pred cccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 331 DQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 331 ~~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
.+...+++++.++|+|||++++.+...
T Consensus 120 -~~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 120 -TDIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred -ccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 778899999999999999999987643
No 43
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.32 E-value=8e-12 Score=124.32 Aligned_cols=102 Identities=19% Similarity=0.230 Sum_probs=80.4
Q ss_pred CceEEEECCCCch----HHHHhhhcCC----ceeEEEEecCCHHHHHHHHHcC---------------------------
Q 011964 254 VRTILDIGCGYGS----FGAHLFSKEL----LTMCIANYEASGSQVQLTLERG--------------------------- 298 (474)
Q Consensus 254 ~~~VLDIGCGtG~----~~~~La~~g~----~~~~v~giD~s~~~l~~A~erg--------------------------- 298 (474)
..+|+|+|||+|. ++..+++... ....|+|+|+|+.|++.|++.-
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 4689999999996 4555555422 2468999999999999998641
Q ss_pred -----CCcEEEeecccCCCCCCCCeeEEEeccccccccc-cHHHHHHHHHhhcCCCcEEEEEe
Q 011964 299 -----LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ-KDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 299 -----~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~-d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
-.+.+...|+...++++++||+|+|..+++++.. +...++++++++|+|||+|++..
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 1356777788888888889999999988777742 33589999999999999999864
No 44
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.30 E-value=1.5e-11 Score=128.52 Aligned_cols=99 Identities=25% Similarity=0.336 Sum_probs=79.4
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC--CCcEEEeecccCCCCCCCCeeEEEecccccccc-
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD- 331 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg--~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~- 331 (474)
.+|||||||+|.++..+++.. ...|+++|+|+.|++.|+++. ..+.+...+...+ +++||.|++..++.|..
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~ 243 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEHVGP 243 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhhCCh
Confidence 799999999999999998762 258999999999999998763 3455555565544 47899999988766653
Q ss_pred ccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 332 QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 332 ~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
.+...+++++.++|||||++++.+...
T Consensus 244 ~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 244 KNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 344689999999999999999987644
No 45
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.28 E-value=1.5e-11 Score=122.82 Aligned_cols=112 Identities=24% Similarity=0.385 Sum_probs=80.3
Q ss_pred HHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeec
Q 011964 234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFA 307 (474)
Q Consensus 234 ~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~--~~~~~~d 307 (474)
.+.+.+.+.+++| .+|||||||.|.++.+++++. ..+|+++.+|+++.+.++++ |+. +.+...|
T Consensus 51 ~~~~~~~~~l~~G--------~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D 120 (273)
T PF02353_consen 51 LDLLCEKLGLKPG--------DRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQD 120 (273)
T ss_dssp HHHHHTTTT--TT---------EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-
T ss_pred HHHHHHHhCCCCC--------CEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEee
Confidence 3444444555555 899999999999999999982 35899999999999888754 543 5566667
Q ss_pred ccCCCCCCCCeeEEEecccccccc-ccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 308 SKQLPYPSLSFDMLHCARCGVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 308 ~~~Lpf~d~sFDlVvss~~l~~~~-~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
..+++. +||.|++..++.|+. .+...+++++.++|||||.+++...+.
T Consensus 121 ~~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 121 YRDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred ccccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 666544 899999999988885 456789999999999999999876544
No 46
>PRK06202 hypothetical protein; Provisional
Probab=99.28 E-value=1.1e-10 Score=113.44 Aligned_cols=105 Identities=17% Similarity=0.198 Sum_probs=80.0
Q ss_pred CCceEEEECCCCchHHHHhhhc---CCceeEEEEecCCHHHHHHHHHcC--CCcEEEeecccCCCCCCCCeeEEEecccc
Q 011964 253 GVRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~---g~~~~~v~giD~s~~~l~~A~erg--~~~~~~~~d~~~Lpf~d~sFDlVvss~~l 327 (474)
...+|||||||+|.++..|++. ......++++|+++.|++.|+++. .++.+...+...+++++++||+|+|+.++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~l 139 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFL 139 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCee
Confidence 3478999999999998888753 112358999999999999998763 23455556667778888899999999987
Q ss_pred cccccc-HHHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 328 VDWDQK-DGILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 328 ~~~~~d-~~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
+|+.++ ...+|+++.|+++ |.+++.+....
T Consensus 140 hh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 140 HHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred ecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 766332 2479999999998 66677665543
No 47
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.28 E-value=1.4e-11 Score=117.75 Aligned_cols=101 Identities=23% Similarity=0.291 Sum_probs=80.7
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecc-cCCC--CCCCCeeEEEecc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFAS-KQLP--YPSLSFDMLHCAR 325 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~-~~Lp--f~d~sFDlVvss~ 325 (474)
..+|||||||+|.++..+++.. ....++++|+++.+++.|+++ +. ++.+..+++ +.++ +++++||+|++.+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 3689999999999999998763 346799999999999988764 32 467788887 7776 7788999999875
Q ss_pred ccccccc--------cHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 326 CGVDWDQ--------KDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 326 ~l~~~~~--------d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. ..|.. ....+++++.++|||||+|+++..
T Consensus 120 ~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 120 P-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred C-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 4 23321 135799999999999999999875
No 48
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.28 E-value=5.3e-12 Score=122.93 Aligned_cols=99 Identities=23% Similarity=0.289 Sum_probs=79.6
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCC--C---------cEEEeecccCCCCCCCCeeEEE
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--P---------AMIGSFASKQLPYPSLSFDMLH 322 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~--~---------~~~~~~d~~~Lpf~d~sFDlVv 322 (474)
.++|||+|||+|.++..|++.| ..|+|+|.++.|++.|++..- + ..+.+.+.+.+ .+.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceee
Confidence 4679999999999999999987 589999999999999987621 1 11222333332 23599999
Q ss_pred eccccccccccHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 323 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 323 ss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
|+.++.|. .++..++..+.+.|||||.+++++....
T Consensus 164 csevleHV-~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 164 CSEVLEHV-KDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred eHHHHHHH-hCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 99997776 8889999999999999999999987543
No 49
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.27 E-value=7.7e-11 Score=111.66 Aligned_cols=100 Identities=19% Similarity=0.292 Sum_probs=78.0
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHH----HHcCCCcEEEeecccCCCCCCCCeeEEEecccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A----~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~ 329 (474)
+.++||+|||.|..+.+|+++|+ .|+++|.|+..++.+ .+.++++.....|.....++ +.||+|+++.++.+
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred CCcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 36899999999999999999985 799999999888544 45688888888888877776 58999999877665
Q ss_pred cccc-HHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 330 WDQK-DGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 330 ~~~d-~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
...+ ...++..|...++|||++++....
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence 5433 357899999999999999986553
No 50
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.25 E-value=7.4e-11 Score=113.86 Aligned_cols=100 Identities=16% Similarity=0.002 Sum_probs=79.2
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHH-HcCC----------------CcEEEeecccCCCCC-CC
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGL----------------PAMIGSFASKQLPYP-SL 316 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~-erg~----------------~~~~~~~d~~~Lpf~-d~ 316 (474)
.+|||+|||.|..+.+|+++|. .|+|+|+|+.+++.+. ++++ .+.+.++|...++.. .+
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 6999999999999999999974 7999999999998753 3332 456677787777643 35
Q ss_pred CeeEEEeccccccccccH-HHHHHHHHhhcCCCcEEEEEeCC
Q 011964 317 SFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 317 sFDlVvss~~l~~~~~d~-~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
.||.|+-..+++|+.++. ..+++.+.++|||||.+++....
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 799999887777775444 47999999999999987766543
No 51
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.25 E-value=2.4e-11 Score=114.22 Aligned_cols=98 Identities=24% Similarity=0.319 Sum_probs=82.6
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-CCCCCCeeEEEeccccccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-PYPSLSFDMLHCARCGVDWDQ 332 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L-pf~d~sFDlVvss~~l~~~~~ 332 (474)
..+|||+|||.|.+..+|.+. ..+...|+|++++.+..+.++|+++....++. .| .|+|++||.|+++.++-++ .
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~-gL~~f~d~sFD~VIlsqtLQ~~-~ 89 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVARGVSVIQGDLDE-GLADFPDQSFDYVILSQTLQAV-R 89 (193)
T ss_pred CCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHcCCCEEECCHHH-hHhhCCCCCccEEehHhHHHhH-h
Confidence 378999999999999999885 34688999999999999999999987776654 34 4999999999999986665 7
Q ss_pred cHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 333 KDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 333 d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
+++.+|.|+.|+ |...+++-|+.
T Consensus 90 ~P~~vL~EmlRV---gr~~IVsFPNF 112 (193)
T PF07021_consen 90 RPDEVLEEMLRV---GRRAIVSFPNF 112 (193)
T ss_pred HHHHHHHHHHHh---cCeEEEEecCh
Confidence 789999999888 66778877754
No 52
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.25 E-value=1.9e-10 Score=107.36 Aligned_cols=118 Identities=18% Similarity=0.119 Sum_probs=87.0
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCeeEEEeccccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~ 330 (474)
.+|||+|||+|.++..+++.+. .++++|.++.+++.++++ +..+.+..+|....+ .++||+|+++...++.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 6899999999999999998753 799999999999988764 455666666655433 4589999998664433
Q ss_pred ccc--------------------HHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEe
Q 011964 331 DQK--------------------DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 389 (474)
Q Consensus 331 ~~d--------------------~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~ 389 (474)
... ...++.++.++|||||.+++..+.... -..+..++++.+|+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~------------~~~~~~~l~~~gf~~~~ 162 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG------------EPDTFDKLDERGFRYEI 162 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC------------hHHHHHHHHhCCCeEEE
Confidence 211 246799999999999999998864331 12345566667777654
No 53
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.25 E-value=6.3e-11 Score=111.72 Aligned_cols=99 Identities=19% Similarity=0.238 Sum_probs=76.2
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecccCCCCCCCCeeEEEeccccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg---~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~ 330 (474)
.+++||+|||.|.++..|+.+ ...++++|+++..++.|++|- ..+.+..++.... .|++.||+||++.+++.+
T Consensus 44 y~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYYL 119 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYYL 119 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGGS
T ss_pred cceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHcC
Confidence 378999999999999999988 368999999999999999883 3466777766443 678899999999997777
Q ss_pred cc--cHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 331 DQ--KDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 331 ~~--d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
.+ +...++..+...|+|||.+++...
T Consensus 120 ~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 120 DDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 43 345789999999999999999875
No 54
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.23 E-value=5.3e-11 Score=127.55 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=83.4
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeeccc--CCCCCCCCeeEEEecccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASK--QLPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg---~~~~~~~~d~~--~Lpf~d~sFDlVvss~~l~~ 329 (474)
.+|||||||+|.++..|++.+ ..++++|+++.|++.+++.. .++.+...++. .+|+++++||+|++..++++
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHHh
Confidence 689999999999999999874 47899999999998876542 24556666764 57888899999999988776
Q ss_pred cccc-HHHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 330 WDQK-DGILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 330 ~~~d-~~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
+.++ ...+++++.|+|||||++++.+....
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 6433 36899999999999999999886554
No 55
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.23 E-value=8.6e-11 Score=111.73 Aligned_cols=118 Identities=23% Similarity=0.267 Sum_probs=88.2
Q ss_pred hhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeec-cc
Q 011964 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFA-SK 309 (474)
Q Consensus 231 ~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d-~~ 309 (474)
.+......+++.+..+ ...-|||||||+|..+..|.+.| ...+|+|+|+.|++.|.++.+...+...| .+
T Consensus 34 ~em~eRaLELLalp~~------~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~egdlil~DMG~ 104 (270)
T KOG1541|consen 34 AEMAERALELLALPGP------KSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERELEGDLILCDMGE 104 (270)
T ss_pred HHHHHHHHHHhhCCCC------CCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhhhcCeeeeecCC
Confidence 3334444455554443 56789999999999999998887 46789999999999999876654443333 37
Q ss_pred CCCCCCCCeeEEEecccccccc-------ccH----HHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 310 QLPYPSLSFDMLHCARCGVDWD-------QKD----GILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 310 ~Lpf~d~sFDlVvss~~l~~~~-------~d~----~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
.+||..++||.|++..+ +.|. .++ ..++..++.+|++|+..++.-.+.
T Consensus 105 GlpfrpGtFDg~ISISA-vQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 105 GLPFRPGTFDGVISISA-VQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred CCCCCCCccceEEEeee-eeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 79999999999998755 4552 122 256888999999999999987543
No 56
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.23 E-value=2e-10 Score=108.13 Aligned_cols=96 Identities=24% Similarity=0.281 Sum_probs=75.3
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCeeEEEeccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlVvss~~l~ 328 (474)
..+|||||||+|.++..++... ....++++|.++.|++.++++ ++ ++.+..+++..++ .+++||+|++.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~- 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L- 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h-
Confidence 3789999999999999887653 335799999999998776543 44 4677888887764 357999999864 1
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
.+...+++.+.++|||||.+++...
T Consensus 119 ---~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 119 ---ASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ---hCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 3446688999999999999998753
No 57
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.21 E-value=2.4e-10 Score=98.76 Aligned_cols=96 Identities=21% Similarity=0.188 Sum_probs=73.6
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC-CCCCCCCeeEEEeccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCGV 328 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~-Lpf~d~sFDlVvss~~l~ 328 (474)
.+|||+|||+|.++..+++.. ....++++|+++.+++.++++ +. ++.+...+... ++....+||.|++.....
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~ 99 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGSGG 99 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCcch
Confidence 689999999999999998863 236899999999999887653 22 35555555543 333346899999875422
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
....+++++.++|||||+|++..
T Consensus 100 ----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 100 ----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 23579999999999999999875
No 58
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.20 E-value=1.1e-10 Score=116.18 Aligned_cols=117 Identities=22% Similarity=0.279 Sum_probs=90.9
Q ss_pred hhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEE
Q 011964 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIG 304 (474)
Q Consensus 231 ~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~--~~~~ 304 (474)
..-.+.+.+.+.+.+| .+|||||||-|.++.+++++- .++|+|+++|++|.+.++++ |++ +.+.
T Consensus 58 ~~k~~~~~~kl~L~~G--------~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~ 127 (283)
T COG2230 58 RAKLDLILEKLGLKPG--------MTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVR 127 (283)
T ss_pred HHHHHHHHHhcCCCCC--------CEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEE
Confidence 3445667777777777 899999999999999999982 36899999999999887764 554 4444
Q ss_pred eecccCCCCCCCCeeEEEeccccccccc-cHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 011964 305 SFASKQLPYPSLSFDMLHCARCGVDWDQ-KDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (474)
Q Consensus 305 ~~d~~~Lpf~d~sFDlVvss~~l~~~~~-d~~~~L~ei~RvLKPGG~lvis~~~~~~ 360 (474)
..|..+ ..+.||-|+|...+.|+.. +...+++.++++|+|||.+++.+.....
T Consensus 128 l~d~rd---~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 128 LQDYRD---FEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred eccccc---cccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 334333 3445999999999888743 4578999999999999999998766543
No 59
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.19 E-value=1.9e-10 Score=110.80 Aligned_cols=95 Identities=19% Similarity=0.276 Sum_probs=76.7
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCeeEEEecccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlVvss~~l 327 (474)
..+|||||||+|.++..+++.+ ..++++|+++.|++.|+++ +. ++.+...++..++ ++||+|++..++
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~l 129 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDVL 129 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhHH
Confidence 4789999999999999998874 4799999999999998875 22 4567777777665 789999999887
Q ss_pred cccc-ccHHHHHHHHHhhcCCCcEEEEE
Q 011964 328 VDWD-QKDGILLLEVDRVLKPGGYFVWT 354 (474)
Q Consensus 328 ~~~~-~d~~~~L~ei~RvLKPGG~lvis 354 (474)
+++. .+...++.++.+++++++++.+.
T Consensus 130 ~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 130 IHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred HhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 7764 23468899999999987776654
No 60
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.19 E-value=1.2e-10 Score=112.00 Aligned_cols=98 Identities=12% Similarity=0.013 Sum_probs=73.8
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC--------CCCCCeeEEEecc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCAR 325 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lp--------f~d~sFDlVvss~ 325 (474)
..+|||||||+|.++..++++......|+++|+++ |. ....+.+.++|+...+ +.+++||+|+|..
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~ 125 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDM 125 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCC
Confidence 36899999999999999988743345899999988 21 1124667777877753 6778999999976
Q ss_pred ccccccccH-----------HHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 326 CGVDWDQKD-----------GILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 326 ~l~~~~~d~-----------~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
+ .++..++ ..+|.++.++|||||.|++..+..
T Consensus 126 ~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 126 A-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred C-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 5 3332211 458999999999999999987643
No 61
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.18 E-value=5.9e-11 Score=114.38 Aligned_cols=124 Identities=20% Similarity=0.266 Sum_probs=83.3
Q ss_pred cccccccc-cchhhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC
Q 011964 220 FRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG 298 (474)
Q Consensus 220 F~~~~~~y-d~~~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg 298 (474)
|...+..| +....|.....+.+..... ..+.++|+|||+|..+..+++. + ..|+++|+|++|++.|++..
T Consensus 5 ~~~~a~~Y~~ARP~YPtdw~~~ia~~~~------~h~~a~DvG~G~Gqa~~~iae~-~--k~VIatD~s~~mL~~a~k~~ 75 (261)
T KOG3010|consen 5 FDKQAADYLNARPSYPTDWFKKIASRTE------GHRLAWDVGTGNGQAARGIAEH-Y--KEVIATDVSEAMLKVAKKHP 75 (261)
T ss_pred ccccHHHHhhcCCCCcHHHHHHHHhhCC------CcceEEEeccCCCcchHHHHHh-h--hhheeecCCHHHHHHhhcCC
Confidence 34444555 3345554444444433222 2358999999999777667666 3 57999999999999998753
Q ss_pred C------CcEEEeecccCCCCCCCCeeEEEeccccccccccHHHHHHHHHhhcCCCc-EEEEE
Q 011964 299 L------PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGG-YFVWT 354 (474)
Q Consensus 299 ~------~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG-~lvis 354 (474)
. +......++..|--.++|.|+|+|..| .|| -|.+.++++++|+||+.| .+.+-
T Consensus 76 ~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa-~HW-Fdle~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 76 PVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA-VHW-FDLERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred CcccccCCccccccccccccCCCcceeeehhhhh-HHh-hchHHHHHHHHHHcCCCCCEEEEE
Confidence 2 122222222333334899999999999 788 567889999999999877 55543
No 62
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.16 E-value=1.1e-10 Score=110.78 Aligned_cols=101 Identities=23% Similarity=0.300 Sum_probs=79.6
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCC---CCCCCeeEEEecc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP---YPSLSFDMLHCAR 325 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~Lp---f~d~sFDlVvss~ 325 (474)
..+|||||||+|.++..+++.. ....++++|+++.+++.|+++ ++ ++.+..+|+..++ +++++||.|++.+
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 3689999999999999999874 456899999999999887654 33 5677777876654 5667999999875
Q ss_pred ccccccccH--------HHHHHHHHhhcCCCcEEEEEeC
Q 011964 326 CGVDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 326 ~l~~~~~d~--------~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. .+|.... ..+++++.|+|||||.|++.+.
T Consensus 96 p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 P-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred C-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 4 4443221 4689999999999999999874
No 63
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.16 E-value=6e-10 Score=112.83 Aligned_cols=102 Identities=16% Similarity=0.216 Sum_probs=80.6
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCeeEEEecccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlVvss~~l 327 (474)
..+|||||||+|.++..++++. +..+++++|. +.+++.++++ ++ .+.+..+|+...++++ +|+|+++.++
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~l 225 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRIL 225 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhhh
Confidence 4799999999999999999884 4467899997 6788877654 43 3556777776666654 6999988887
Q ss_pred ccccccH-HHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 328 VDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 328 ~~~~~d~-~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
++|.++. ..+|++++++|||||.+++.+....
T Consensus 226 h~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 226 YSANEQLSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred hcCChHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 7775433 5799999999999999999987554
No 64
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.16 E-value=3e-10 Score=108.72 Aligned_cols=94 Identities=18% Similarity=0.095 Sum_probs=72.2
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCeeEEEeccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlVvss~~l~ 328 (474)
.+|||||||+|..+..+++.-.....++++|+++.+++.|+++ +. .+.+..+|........++||+|++..+..
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~ 153 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAAS 153 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCcc
Confidence 7899999999999988887521224799999999999888764 33 25677777766544567999999986643
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
+. ..++.++|+|||++++..
T Consensus 154 ~~-------~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 154 TI-------PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred hh-------hHHHHHhcCcCcEEEEEE
Confidence 33 357889999999998854
No 65
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.14 E-value=3.1e-10 Score=113.44 Aligned_cols=103 Identities=17% Similarity=0.269 Sum_probs=81.8
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHH--HHc--CCC--cEEEeecccCCCCCCCCeeEEEeccc
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT--LER--GLP--AMIGSFASKQLPYPSLSFDMLHCARC 326 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A--~er--g~~--~~~~~~d~~~Lpf~d~sFDlVvss~~ 326 (474)
..++|||||||.|.++-.++.+|. ..|+|+|++....-.. .++ +.. +.......+++|. .++||+|+|..+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGV 191 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGV 191 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeee
Confidence 348999999999999999999875 6799999998665332 122 222 2333357788888 789999999999
Q ss_pred cccccccHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
++|. .++-..|.+++..|+|||.+++.+.+..
T Consensus 192 LYHr-r~Pl~~L~~Lk~~L~~gGeLvLETlvi~ 223 (315)
T PF08003_consen 192 LYHR-RSPLDHLKQLKDSLRPGGELVLETLVID 223 (315)
T ss_pred hhcc-CCHHHHHHHHHHhhCCCCEEEEEEeeec
Confidence 8887 7888899999999999999998877543
No 66
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.14 E-value=7.3e-10 Score=111.60 Aligned_cols=98 Identities=14% Similarity=0.204 Sum_probs=73.2
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCeeEEEecccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~ 329 (474)
..+|||+|||+|.++..+++.+. ..++++|+++.+++.|+++ ++...+........+..+++||+|+++...
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-- 235 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence 37899999999999998887753 5899999999999988875 333222211111234556799999987542
Q ss_pred ccccHHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 330 WDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 330 ~~~d~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
.....++.++.++|||||+++++...
T Consensus 236 --~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 236 --EVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred --HHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 22356899999999999999999864
No 67
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.12 E-value=6.6e-10 Score=107.63 Aligned_cols=98 Identities=15% Similarity=0.027 Sum_probs=76.7
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHH-HcCC----------------CcEEEeecccCCCCC-CC
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGL----------------PAMIGSFASKQLPYP-SL 316 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~-erg~----------------~~~~~~~d~~~Lpf~-d~ 316 (474)
.+|||+|||.|..+..|+++|. .|+|+|+|+.+++.+. ++++ .+.+.++|...++.. .+
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 6899999999999999999874 7999999999998763 3443 345567777776533 25
Q ss_pred CeeEEEeccccccccccH-HHHHHHHHhhcCCCcEEEEEe
Q 011964 317 SFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 317 sFDlVvss~~l~~~~~d~-~~~L~ei~RvLKPGG~lvis~ 355 (474)
.||+|+-..+++++.++. ..++..+.++|||||.+++..
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 899999887767765443 589999999999999755543
No 68
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.12 E-value=1.4e-09 Score=102.32 Aligned_cols=116 Identities=18% Similarity=0.176 Sum_probs=83.9
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCeeEEEecccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~ 329 (474)
.+|||||||+|.++..+++.. ...+++++|+++.+++.|+++ ++ ++.+...+.. .+++ ++||+|++....
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~~-~~~D~v~~~~~~-- 107 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IELP-GKADAIFIGGSG-- 107 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhcC-cCCCEEEECCCc--
Confidence 689999999999999998874 346899999999999888754 32 3455555542 3343 589999987542
Q ss_pred ccccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEe
Q 011964 330 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 389 (474)
Q Consensus 330 ~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~ 389 (474)
.....++.++.++|+|||++++...... ...++..+.++.+|+.+.
T Consensus 108 --~~~~~~l~~~~~~Lk~gG~lv~~~~~~~------------~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 108 --GNLTAIIDWSLAHLHPGGRLVLTFILLE------------NLHSALAHLEKCGVSELD 153 (187)
T ss_pred --cCHHHHHHHHHHhcCCCeEEEEEEecHh------------hHHHHHHHHHHCCCCcce
Confidence 2345689999999999999998764321 133455667777776443
No 69
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.12 E-value=4.3e-10 Score=104.50 Aligned_cols=100 Identities=19% Similarity=0.258 Sum_probs=74.5
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCCCCCCCeeEEEecccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~-~~~~~~d~~~Lpf~d~sFDlVvss~~l~~ 329 (474)
.+|||+|||+|..+..+++.+ ....++++|+++.+++.++++ ++. +.+...|... ++++++||+|+|+--++.
T Consensus 33 ~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE---SBT
T ss_pred CeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccchhc
Confidence 689999999999999999885 345799999999999988764 455 5566555433 345789999999855332
Q ss_pred ccc----cHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 330 WDQ----KDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 330 ~~~----d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
-.. -...++.+..+.|||||.+++...
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 211 135789999999999999987654
No 70
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.12 E-value=1.2e-09 Score=104.94 Aligned_cols=101 Identities=20% Similarity=0.319 Sum_probs=82.0
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCC-CCCeeEEEecccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP-SLSFDMLHCARCG 327 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~Lpf~-d~sFDlVvss~~l 327 (474)
..+|||+|||+|.++..+++.+ ..++++|.++.+++.++++ +. ++.+...+...++.+ .++||+|++..++
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4689999999999999988765 3589999999999888764 34 466666777666654 3789999998875
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
.+. .++..++.++.++|+|||.+++++...
T Consensus 123 ~~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 123 EHV-PDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred HhC-CCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 554 778899999999999999999987643
No 71
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.10 E-value=9.3e-11 Score=112.10 Aligned_cols=134 Identities=19% Similarity=0.261 Sum_probs=98.3
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccC-CC-CCCCCeeEEEecccccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-LP-YPSLSFDMLHCARCGVDWD 331 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~-Lp-f~d~sFDlVvss~~l~~~~ 331 (474)
.+++||+|||||..+..|... ...++|+|+|+.|++.|.++++--.+.++++.. ++ ..+..||+|++..++..+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Yl- 201 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYL- 201 (287)
T ss_pred cceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhh-
Confidence 589999999999999999776 357899999999999999998766655555443 23 556789999999885555
Q ss_pred ccHHHHHHHHHhhcCCCcEEEEEeCCCCchh--h-hhhHHHHHHHHHHHHHHHhhCceEEeee
Q 011964 332 QKDGILLLEVDRVLKPGGYFVWTSPLTNPQA--F-LRNKENQKRWNFVRDFVENLCWELVSQQ 391 (474)
Q Consensus 332 ~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~--~-~~~~e~~~~w~~~~~la~~l~W~~~~~~ 391 (474)
.+.+.++.-+...|+|||.|.|+.-.....+ . .+.......-.-++...+..+++.+...
T Consensus 202 G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 202 GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIE 264 (287)
T ss_pred cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEee
Confidence 6778899999999999999999875433221 1 1111111122345667788888877643
No 72
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.10 E-value=6.8e-10 Score=107.62 Aligned_cols=101 Identities=18% Similarity=0.333 Sum_probs=81.8
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCC-CCCCCeeEEEeccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP-YPSLSFDMLHCARCGV 328 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~~~~~~d~~~Lp-f~d~sFDlVvss~~l~ 328 (474)
..+|||||||+|.++..+++.+ ..++++|+++.+++.++++ +..+.+...+...++ ..++.||+|+++.++.
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 4689999999999999998875 4699999999999888765 444556666666554 3457899999998755
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
+. .+...+|+++.++|+|||.++++.+..
T Consensus 126 ~~-~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 126 HV-PDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred cc-CCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 55 677889999999999999999987653
No 73
>PRK04266 fibrillarin; Provisional
Probab=99.09 E-value=1.3e-09 Score=106.08 Aligned_cols=130 Identities=13% Similarity=0.100 Sum_probs=82.9
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc---CCCcEEEeecccC----CCCCCCCeeEEEecccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQ----LPYPSLSFDMLHCARCG 327 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er---g~~~~~~~~d~~~----Lpf~d~sFDlVvss~~l 327 (474)
.+|||+|||+|.++..+++.. ....|+++|+++.|++.+.++ ..++.+..+|+.. .+++ .+||+|++...
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v-~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~~- 150 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIV-EEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQDVA- 150 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEECCC-
Confidence 799999999999999998862 134799999999988754332 1245555566543 1233 46999996522
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEeeec
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQD 392 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~~~~ 392 (474)
.. .....++.++.|+|||||.++++.+.... .+.... ....+.....++..+|+.+....
T Consensus 151 ~p--~~~~~~L~~~~r~LKpGG~lvI~v~~~~~-d~~~~~--~~~~~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 151 QP--NQAEIAIDNAEFFLKDGGYLLLAIKARSI-DVTKDP--KEIFKEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred Ch--hHHHHHHHHHHHhcCCCcEEEEEEecccc-cCcCCH--HHHHHHHHHHHHHcCCeEEEEEc
Confidence 11 12245789999999999999996432111 111111 12223334667777888775443
No 74
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.09 E-value=8.5e-10 Score=106.25 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=80.7
Q ss_pred hhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEee
Q 011964 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSF 306 (474)
Q Consensus 232 ~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~ 306 (474)
.....+.+.+...++ .+|||||||+|.++..+++......+++++|+++.+++.|+++ +. ++.+..+
T Consensus 63 ~~~~~~~~~l~~~~g--------~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~g 134 (212)
T PRK13942 63 HMVAIMCELLDLKEG--------MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVG 134 (212)
T ss_pred HHHHHHHHHcCCCCc--------CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC
Confidence 334455555555444 7999999999999998887622235899999999999988765 33 4677778
Q ss_pred cccCCCCCCCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 307 ASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 307 d~~~Lpf~d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
|......+++.||+|++.....+ ....+.+.|||||.+++..
T Consensus 135 d~~~~~~~~~~fD~I~~~~~~~~-------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 135 DGTLGYEENAPYDRIYVTAAGPD-------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcccCCCcCCCcCEEEECCCccc-------chHHHHHhhCCCcEEEEEE
Confidence 87766666789999998755322 2346778999999999854
No 75
>PRK14967 putative methyltransferase; Provisional
Probab=99.09 E-value=2.5e-09 Score=103.51 Aligned_cols=100 Identities=16% Similarity=0.125 Sum_probs=74.8
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCeeEEEeccccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~ 330 (474)
.+|||+|||+|.++..+++.+. ..++++|+++.+++.++++ ++++.+...|... .+++++||+|+++-.....
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVPA 114 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCCC
Confidence 6899999999999999987642 4899999999999877664 4555666666544 3567799999997432211
Q ss_pred cc--------------------cHHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 331 DQ--------------------KDGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 331 ~~--------------------d~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
.. ....++.++.++|||||.+++....
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 115 PPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 00 1245788999999999999987654
No 76
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.08 E-value=2.7e-09 Score=108.77 Aligned_cols=93 Identities=18% Similarity=0.258 Sum_probs=68.3
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC----------CCcEEEeecccCCCCCCCCeeEEEe
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------LPAMIGSFASKQLPYPSLSFDMLHC 323 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg----------~~~~~~~~d~~~Lpf~d~sFDlVvs 323 (474)
..+|||||||+|.++..+++.+ ..++++|+|+.|++.|+++. ..+.+...|.+.+ +++||+|+|
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 3689999999999999999875 47999999999999988762 1234555554433 578999999
Q ss_pred ccccccccccH-HHHHHHHHhhcCCCcEEEE
Q 011964 324 ARCGVDWDQKD-GILLLEVDRVLKPGGYFVW 353 (474)
Q Consensus 324 s~~l~~~~~d~-~~~L~ei~RvLKPGG~lvi 353 (474)
..+++|+..+. ..+++.+.+ +.+||.++.
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence 99877774433 245666664 456666443
No 77
>PLN03075 nicotianamine synthase; Provisional
Probab=99.08 E-value=9.9e-10 Score=110.44 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=80.2
Q ss_pred CCceEEEECCCCchHHHHh-hhcCCceeEEEEecCCHHHHHHHHHcC-----C--CcEEEeecccCCCCCCCCeeEEEec
Q 011964 253 GVRTILDIGCGYGSFGAHL-FSKELLTMCIANYEASGSQVQLTLERG-----L--PAMIGSFASKQLPYPSLSFDMLHCA 324 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~L-a~~g~~~~~v~giD~s~~~l~~A~erg-----~--~~~~~~~d~~~Lpf~d~sFDlVvss 324 (474)
.+++|+|||||.|.++..+ +........++++|.++++++.|++.- + .+.|..+|+.+.+-..+.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 4589999999988665443 333345578999999999999888642 2 3678888877654345689999999
Q ss_pred ccccccc-ccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 325 RCGVDWD-QKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 325 ~~l~~~~-~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
++++|. .+...+|..+.+.|+|||++++-.
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 778884 677899999999999999999976
No 78
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.08 E-value=5.2e-10 Score=115.28 Aligned_cols=100 Identities=20% Similarity=0.197 Sum_probs=76.7
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCeeEEEeccccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~ 330 (474)
.+|||+|||+|.++..++++. ....++++|+++.+++.|+++ ++...+...|... ..++.||+|+|+..++..
T Consensus 198 g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPPFHDG 274 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCCccCC
Confidence 579999999999999999874 345799999999999888753 4555555555433 235789999998764432
Q ss_pred c----ccHHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 331 D----QKDGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 331 ~----~d~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
. ...+.++.++.+.|||||.|++....
T Consensus 275 ~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 275 IQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 1 22368999999999999999997753
No 79
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=99.08 E-value=3e-10 Score=119.65 Aligned_cols=126 Identities=23% Similarity=0.472 Sum_probs=100.9
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccc-
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD- 331 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~- 331 (474)
..++|+|+.+|.|.|+++|.+..+.+++|+++ ..+..+....+||+--.++.- .+.++.-+++||+||+...+-.+.
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGLIG~yhDW-CE~fsTYPRTYDLlHA~~lfs~~~~ 442 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGLIGVYHDW-CEAFSTYPRTYDLLHADGLFSLYKD 442 (506)
T ss_pred ceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhcccchhccch-hhccCCCCcchhheehhhhhhhhcc
Confidence 56899999999999999999999999999988 455577777888875555543 366777778999999987755542
Q ss_pred -ccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEeeecc
Q 011964 332 -QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDE 393 (474)
Q Consensus 332 -~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~~~~~ 393 (474)
-+.+.+|.||+|+|||||.++|.+. ...-.+++.+++.+.|+....+.+
T Consensus 443 rC~~~~illEmDRILRP~G~~iiRD~-------------~~vl~~v~~i~~~lrW~~~~~d~e 492 (506)
T PF03141_consen 443 RCEMEDILLEMDRILRPGGWVIIRDT-------------VDVLEKVKKIAKSLRWEVRIHDTE 492 (506)
T ss_pred cccHHHHHHHhHhhcCCCceEEEecc-------------HHHHHHHHHHHHhCcceEEEEecC
Confidence 2346899999999999999999663 245678889999999998775543
No 80
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.07 E-value=2.5e-09 Score=105.50 Aligned_cols=112 Identities=22% Similarity=0.297 Sum_probs=80.2
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCeeEEEecccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~ 329 (474)
..+|||+|||+|.++..+++.+. ..++++|+++.+++.|+++ ++...+ .++..+.+||+|+++...
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~~~~~------~~~~~~~~fD~Vvani~~-- 189 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGVELNV------YLPQGDLKADVIVANILA-- 189 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCceE------EEccCCCCcCEEEEcCcH--
Confidence 47899999999999998887754 3599999999999988875 221111 122223379999987431
Q ss_pred ccccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEe
Q 011964 330 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 389 (474)
Q Consensus 330 ~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~ 389 (474)
.....++.++.++|||||++++++.... ....+....++.+|+...
T Consensus 190 --~~~~~l~~~~~~~LkpgG~lilsgi~~~------------~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 190 --NPLLELAPDLARLLKPGGRLILSGILEE------------QADEVLEAYEEAGFTLDE 235 (250)
T ss_pred --HHHHHHHHHHHHhcCCCcEEEEEECcHh------------hHHHHHHHHHHCCCEEEE
Confidence 2235689999999999999999976432 123456667778887664
No 81
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.07 E-value=1e-09 Score=114.22 Aligned_cols=127 Identities=16% Similarity=0.164 Sum_probs=86.2
Q ss_pred ccccccccc--cchhhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHH
Q 011964 219 SFRSASLIF--DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 296 (474)
Q Consensus 219 ~F~~~~~~y--d~~~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~e 296 (474)
.|....+.| +..+.-.+.+.+.++.... .+|||+|||+|.++..+++++ +...++++|.|+.+++.|++
T Consensus 200 ~~~~~~gVFs~~~LD~GtrllL~~lp~~~~--------~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~ 270 (378)
T PRK15001 200 TIHNHANVFSRTGLDIGARFFMQHLPENLE--------GEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRL 270 (378)
T ss_pred EEEecCCccCCCCcChHHHHHHHhCCcccC--------CeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHH
Confidence 344444444 2234444556666553322 589999999999999999874 34689999999999999886
Q ss_pred c----CC----CcEEEeecccCCCCCCCCeeEEEecccccccc--c--cHHHHHHHHHhhcCCCcEEEEEe
Q 011964 297 R----GL----PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD--Q--KDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 297 r----g~----~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~--~--d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
+ +. .+.+...|... .+++.+||+|+|+-.++... . ...++++++.++|+|||.|++..
T Consensus 271 N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 271 NVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred HHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4 22 23444444322 23456899999986533221 1 12478999999999999999985
No 82
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.06 E-value=9.2e-10 Score=104.17 Aligned_cols=94 Identities=23% Similarity=0.278 Sum_probs=72.8
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccC-C-CCCCCCeeEEEeccccccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-L-PYPSLSFDMLHCARCGVDWDQ 332 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~-L-pf~d~sFDlVvss~~l~~~~~ 332 (474)
.+|||||||+|.++..+++.. ...++++|+++.+++.++++++. +..+++.. + ++++++||+|+|+.+++|. .
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~~~--~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~-~ 89 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARGVN--VIQGDLDEGLEAFPDKSFDYVILSQTLQAT-R 89 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcCCe--EEEEEhhhcccccCCCCcCEEEEhhHhHcC-c
Confidence 589999999999999987653 24678999999999999877654 44455544 4 4778899999999886555 7
Q ss_pred cHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 333 KDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 333 d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
++..+|+++.|++++ .+++.+
T Consensus 90 d~~~~l~e~~r~~~~---~ii~~p 110 (194)
T TIGR02081 90 NPEEILDEMLRVGRH---AIVSFP 110 (194)
T ss_pred CHHHHHHHHHHhCCe---EEEEcC
Confidence 888899999887664 445444
No 83
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.05 E-value=1.2e-09 Score=113.75 Aligned_cols=101 Identities=25% Similarity=0.347 Sum_probs=81.0
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCC--CCCCCCeeEEEeccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL--PYPSLSFDMLHCARC 326 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~L--pf~d~sFDlVvss~~ 326 (474)
...+||||||+|.++..++... +...++|+|++..+++.|.++ ++ ++.+..+|+..+ .+++++||.|++.+.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 3589999999999999999885 457899999999998777544 44 466777787654 588999999998754
Q ss_pred cccccccH------HHHHHHHHhhcCCCcEEEEEeC
Q 011964 327 GVDWDQKD------GILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 327 l~~~~~d~------~~~L~ei~RvLKPGG~lvis~~ 356 (474)
..|.... ..++.++.|+|+|||.+.+.+-
T Consensus 202 -dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 202 -VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred -CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 5564332 4799999999999999999764
No 84
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.05 E-value=1.3e-09 Score=104.94 Aligned_cols=107 Identities=21% Similarity=0.193 Sum_probs=78.4
Q ss_pred HHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecc
Q 011964 234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFAS 308 (474)
Q Consensus 234 ~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~ 308 (474)
...+.+.+...++ .+|||||||+|.++..+++.......++++|.++.+++.|+++ ++ ++.+..+|.
T Consensus 66 ~~~~~~~l~~~~~--------~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~ 137 (215)
T TIGR00080 66 VAMMTELLELKPG--------MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDG 137 (215)
T ss_pred HHHHHHHhCCCCc--------CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCc
Confidence 3455555554444 7999999999999999988733234699999999999988765 33 466777776
Q ss_pred cCCCCCCCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 309 KQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 309 ~~Lpf~d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
.........||+|++.....+ +...+.+.|+|||++++..
T Consensus 138 ~~~~~~~~~fD~Ii~~~~~~~-------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 138 TQGWEPLAPYDRIYVTAAGPK-------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred ccCCcccCCCCEEEEcCCccc-------ccHHHHHhcCcCcEEEEEE
Confidence 655444568999998754222 3456889999999999854
No 85
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.04 E-value=6.5e-10 Score=95.72 Aligned_cols=100 Identities=25% Similarity=0.409 Sum_probs=78.7
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCC--CCCCCeeEEEeccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~Lp--f~d~sFDlVvss~~ 326 (474)
.+|||+|||+|.++..+++.+ ...++++|+++..++.++++ +. ++.+...|..... +++++||+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 579999999999999999886 47899999999999988865 22 4678888877775 78899999999854
Q ss_pred ccccc-------ccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 327 GVDWD-------QKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 327 l~~~~-------~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
..... .....+++++.++|||||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 33221 1124789999999999999999765
No 86
>PTZ00146 fibrillarin; Provisional
Probab=99.04 E-value=4.1e-09 Score=105.70 Aligned_cols=154 Identities=14% Similarity=0.043 Sum_probs=92.7
Q ss_pred hhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHH----HHHHHHHcCCCcEEEee
Q 011964 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS----QVQLTLERGLPAMIGSF 306 (474)
Q Consensus 231 ~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~----~l~~A~erg~~~~~~~~ 306 (474)
+.|...++..+..... .+.-....+|||+|||+|.++.++++.--..-.|+++|+++. +++.++++ .++.....
T Consensus 111 ~p~rSKlaa~i~~g~~-~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~ 188 (293)
T PTZ00146 111 NPFRSKLAAAIIGGVA-NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIE 188 (293)
T ss_pred CCcccHHHHHHHCCcc-eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEEC
Confidence 4445555544432222 111123478999999999999999987322347999999986 44555543 34555555
Q ss_pred cccC---CCCCCCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhh
Q 011964 307 ASKQ---LPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENL 383 (474)
Q Consensus 307 d~~~---Lpf~d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l 383 (474)
|+.. ......+||+|++... . .++...++.++.++|||||+|++........ ..++.+..-. +++ +.+++.
T Consensus 189 Da~~p~~y~~~~~~vDvV~~Dva-~--pdq~~il~~na~r~LKpGG~~vI~ika~~id-~g~~pe~~f~-~ev-~~L~~~ 262 (293)
T PTZ00146 189 DARYPQKYRMLVPMVDVIFADVA-Q--PDQARIVALNAQYFLKNGGHFIISIKANCID-STAKPEVVFA-SEV-QKLKKE 262 (293)
T ss_pred CccChhhhhcccCCCCEEEEeCC-C--cchHHHHHHHHHHhccCCCEEEEEEeccccc-cCCCHHHHHH-HHH-HHHHHc
Confidence 6532 1223458999998753 2 2334467779999999999999954332221 1122222222 344 556667
Q ss_pred CceEEeeec
Q 011964 384 CWELVSQQD 392 (474)
Q Consensus 384 ~W~~~~~~~ 392 (474)
+|+.+.+..
T Consensus 263 GF~~~e~v~ 271 (293)
T PTZ00146 263 GLKPKEQLT 271 (293)
T ss_pred CCceEEEEe
Confidence 787665443
No 87
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.04 E-value=4e-09 Score=100.25 Aligned_cols=117 Identities=21% Similarity=0.193 Sum_probs=82.8
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCC-CCCCCCeeEEEeccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-PYPSLSFDMLHCARC 326 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~L-pf~d~sFDlVvss~~ 326 (474)
..+|||+|||+|.++..++.......+++++|.++.+++.++++ ++ ++.+...+.... +..++.||.|++...
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~ 120 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG 120 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC
Confidence 37899999999999998876422235799999999999987654 42 355666666543 333468999998532
Q ss_pred cccccccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCce
Q 011964 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWE 386 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~ 386 (474)
..+...++.++.++|||||++++..... .....+...+++.+|+
T Consensus 121 ----~~~~~~~l~~~~~~LkpgG~lv~~~~~~------------~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 121 ----SEKLKEIISASWEIIKKGGRIVIDAILL------------ETVNNALSALENIGFN 164 (198)
T ss_pred ----cccHHHHHHHHHHHcCCCcEEEEEeecH------------HHHHHHHHHHHHcCCC
Confidence 1455789999999999999999855421 1234455566667764
No 88
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.03 E-value=7.7e-10 Score=101.88 Aligned_cols=77 Identities=18% Similarity=0.096 Sum_probs=66.2
Q ss_pred EEecCCHHHHHHHHHcC--------CCcEEEeecccCCCCCCCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEE
Q 011964 282 ANYEASGSQVQLTLERG--------LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVW 353 (474)
Q Consensus 282 ~giD~s~~~l~~A~erg--------~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvi 353 (474)
+|+|+|+.|++.|+++. .++.+..+|++++|+++++||+|++.++++++ .+...+|+|++|+|||||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~-~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV-VDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC-CCHHHHHHHHHHHcCcCeEEEE
Confidence 47999999999997542 14678889999999999999999999886555 7888999999999999999999
Q ss_pred EeCCCC
Q 011964 354 TSPLTN 359 (474)
Q Consensus 354 s~~~~~ 359 (474)
.+....
T Consensus 80 ~d~~~~ 85 (160)
T PLN02232 80 LDFNKS 85 (160)
T ss_pred EECCCC
Confidence 987653
No 89
>PRK14968 putative methyltransferase; Provisional
Probab=99.03 E-value=9.8e-09 Score=95.52 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=84.1
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCC---cEEEeecccCCCCCCCCeeEEEecccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQLPYPSLSFDMLHCARCG 327 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~---~~~~~~d~~~Lpf~d~sFDlVvss~~l 327 (474)
.+|||+|||+|.++..++..+ .+++++|.++.+++.++++ +.. +.+...|... ++.+++||+|+++...
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPPY 100 (188)
T ss_pred CEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCCc
Confidence 689999999999999999873 5899999999999888654 332 5555555443 4556689999987543
Q ss_pred cccc--------------------ccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceE
Q 011964 328 VDWD--------------------QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWEL 387 (474)
Q Consensus 328 ~~~~--------------------~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~ 387 (474)
.... .....+++++.++|||||.+++..+.... -..+..+.+..+|+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~------------~~~l~~~~~~~g~~~ 168 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG------------EDEVLEYLEKLGFEA 168 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC------------HHHHHHHHHHCCCee
Confidence 2210 11246899999999999999987653321 123455667777765
Q ss_pred Ee
Q 011964 388 VS 389 (474)
Q Consensus 388 ~~ 389 (474)
..
T Consensus 169 ~~ 170 (188)
T PRK14968 169 EV 170 (188)
T ss_pred ee
Confidence 43
No 90
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.01 E-value=5.7e-09 Score=107.03 Aligned_cols=100 Identities=21% Similarity=0.169 Sum_probs=78.6
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCCCCCCCeeEEEecccc--
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCG-- 327 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~-~~~~~~d~~~Lpf~d~sFDlVvss~~l-- 327 (474)
.+|||+|||+|.++..++..+ ..++++|+++.|++.|+++ ++. +.+...|+.++|+++++||+|++.-..
T Consensus 184 ~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~ 260 (329)
T TIGR01177 184 DRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGR 260 (329)
T ss_pred CEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcC
Confidence 689999999999988876654 5789999999999877654 433 467788999999988999999996221
Q ss_pred ---ccc--c-ccHHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 328 ---VDW--D-QKDGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 328 ---~~~--~-~d~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
... . .....++.++.++|||||++++..+.
T Consensus 261 ~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 261 STTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred cccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 000 0 11367999999999999999998864
No 91
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.99 E-value=3.3e-09 Score=107.49 Aligned_cols=105 Identities=13% Similarity=0.092 Sum_probs=74.7
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc------CCCcEEEeecccC-CCCCCCC----eeEEEe
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQ-LPYPSLS----FDMLHC 323 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er------g~~~~~~~~d~~~-Lpf~d~s----FDlVvs 323 (474)
.+|||+|||+|..+..|++.......++++|+|++|++.|+++ ++++....+|+.+ ++++... ..++++
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~ 144 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFP 144 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEe
Confidence 6899999999999999988742236899999999999888765 2345556777765 4444332 234444
Q ss_pred ccccccccc-cHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 324 ARCGVDWDQ-KDGILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 324 s~~l~~~~~-d~~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
..++.++.+ +...+|++++++|+|||.|++......
T Consensus 145 gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~ 181 (301)
T TIGR03438 145 GSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVK 181 (301)
T ss_pred cccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 444444432 334799999999999999998765443
No 92
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=2.8e-09 Score=106.66 Aligned_cols=131 Identities=20% Similarity=0.279 Sum_probs=95.8
Q ss_pred hhhccccccccc--cchhhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHH
Q 011964 216 EQISFRSASLIF--DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL 293 (474)
Q Consensus 216 ~~~~F~~~~~~y--d~~~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~ 293 (474)
..+.|......| +..+.-.+.+.+.++...+ .+|||+|||.|.++..+++... ...++.+|++...++.
T Consensus 127 ~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~--------~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ 197 (300)
T COG2813 127 HELTFKTLPGVFSRDKLDKGSRLLLETLPPDLG--------GKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVES 197 (300)
T ss_pred CceEEEeCCCCCcCCCcChHHHHHHHhCCccCC--------CcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHH
Confidence 344566666666 4556666777777776554 4899999999999999999853 6789999999999999
Q ss_pred HHHc----CCCcEEEeecccCCCCCCCCeeEEEeccccccccccH----HHHHHHHHhhcCCCcEEEEEeC
Q 011964 294 TLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 294 A~er----g~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d~----~~~L~ei~RvLKPGG~lvis~~ 356 (474)
|+++ ++....+..+....+.++ +||+|+|+--++.-..-. .+++.+..+.|++||.|.+..-
T Consensus 198 ar~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 198 ARKNLAANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HHHhHHHcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 9865 444312222333445555 999999996644332222 3789999999999999999875
No 93
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.98 E-value=4.5e-09 Score=101.29 Aligned_cols=93 Identities=24% Similarity=0.291 Sum_probs=70.6
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCeeEEEecccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlVvss~~l 327 (474)
..+|||||||+|.++..+++.+ ..++++|+++.|++.|+++ +. .+.+..++ ++..+++||+|++..++
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~l 137 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDVL 137 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcchh
Confidence 3689999999999999999875 3599999999999999875 22 34555555 45557899999999887
Q ss_pred ccccc-cHHHHHHHHHhhcCCCcEEE
Q 011964 328 VDWDQ-KDGILLLEVDRVLKPGGYFV 352 (474)
Q Consensus 328 ~~~~~-d~~~~L~ei~RvLKPGG~lv 352 (474)
+|+.. +...+++++.+++++++.+.
T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 138 IHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 77642 33578888988876544433
No 94
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.96 E-value=5.6e-09 Score=84.98 Aligned_cols=97 Identities=26% Similarity=0.331 Sum_probs=75.2
Q ss_pred eEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc-----CCCcEEEeecccCCCC-CCCCeeEEEecccccc
Q 011964 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAMIGSFASKQLPY-PSLSFDMLHCARCGVD 329 (474)
Q Consensus 256 ~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er-----g~~~~~~~~d~~~Lpf-~d~sFDlVvss~~l~~ 329 (474)
+|+|+|||+|.++..+++. ....++++|.++.+++.+++. .....+...+...... ..++||+|++..++.+
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 4899999999999999873 346899999999999887721 1234555566555543 5678999999987444
Q ss_pred ccccHHHHHHHHHhhcCCCcEEEEE
Q 011964 330 WDQKDGILLLEVDRVLKPGGYFVWT 354 (474)
Q Consensus 330 ~~~d~~~~L~ei~RvLKPGG~lvis 354 (474)
+......+++.+.+.|+|||.+++.
T Consensus 79 ~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 79 LVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 2466678999999999999999986
No 95
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.95 E-value=3.4e-09 Score=102.34 Aligned_cols=130 Identities=17% Similarity=0.251 Sum_probs=92.6
Q ss_pred cccchhhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCC-ceeEEEEecCCHHHHHHHHHcC------
Q 011964 226 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKEL-LTMCIANYEASGSQVQLTLERG------ 298 (474)
Q Consensus 226 ~yd~~~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~-~~~~v~giD~s~~~l~~A~erg------ 298 (474)
+|....-..+.+-+++..... ...+|||||||.|.....+.+... ....+.+.|.|+.+++..+++.
T Consensus 50 FfkdR~wL~~Efpel~~~~~~------~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~ 123 (264)
T KOG2361|consen 50 FFKDRNWLLREFPELLPVDEK------SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESR 123 (264)
T ss_pred ccchhHHHHHhhHHhhCcccc------ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhh
Confidence 343334444555565554333 234899999999999888877632 2378999999999999888762
Q ss_pred CCcEEEeecccC--CCCCCCCeeEEEeccccccccccH-HHHHHHHHhhcCCCcEEEEEeCCCCch
Q 011964 299 LPAMIGSFASKQ--LPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQ 361 (474)
Q Consensus 299 ~~~~~~~~d~~~--Lpf~d~sFDlVvss~~l~~~~~d~-~~~L~ei~RvLKPGG~lvis~~~~~~~ 361 (474)
....+..++... -|.+.+++|.|++++++..+.++. ..++.+++++|||||.+++.+.+....
T Consensus 124 ~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dl 189 (264)
T KOG2361|consen 124 VEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDL 189 (264)
T ss_pred hcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchH
Confidence 122233333333 357789999999999877665443 589999999999999999999877653
No 96
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.95 E-value=1.7e-08 Score=98.46 Aligned_cols=120 Identities=20% Similarity=0.293 Sum_probs=83.9
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCCCCCCCeeEEEecccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~-~~~~~~d~~~Lpf~d~sFDlVvss~~l~~ 329 (474)
.+|||+|||+|.++..+++.. ....++++|+++.+++.|+++ ++. +.+..++... ++++++||+|+++.....
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCCc
Confidence 589999999999999998763 335899999999999888754 443 5667667654 566789999998633111
Q ss_pred ------ccc-------------------cHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhC
Q 011964 330 ------WDQ-------------------KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLC 384 (474)
Q Consensus 330 ------~~~-------------------d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~ 384 (474)
+.. ....++.++.++|+|||.+++.... . .-..+.++.++.+
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~-~------------~~~~~~~~l~~~g 233 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY-D------------QGEAVRALFEAAG 233 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc-c------------HHHHHHHHHHhCC
Confidence 100 0135788999999999999986531 0 0123455666677
Q ss_pred ceEEe
Q 011964 385 WELVS 389 (474)
Q Consensus 385 W~~~~ 389 (474)
|+.+.
T Consensus 234 f~~v~ 238 (251)
T TIGR03534 234 FADVE 238 (251)
T ss_pred CCceE
Confidence 75443
No 97
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=6.3e-09 Score=104.53 Aligned_cols=119 Identities=22% Similarity=0.302 Sum_probs=83.1
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCC-CCeeEEEecccc
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPS-LSFDMLHCARCG 327 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~~~~~~d~~~Lpf~d-~sFDlVvss~~l 327 (474)
++++|||+|||+|.++...++.|. ..+.|+|+.+..++.|+++ +++..........+..+. +.||+|+++-..
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 358999999999999999999875 6799999999999888765 444211111111222333 589999998532
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEe
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 389 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~ 389 (474)
.. ...+..++.+.|||||+++++...... -+.+....+..+|+...
T Consensus 240 ~v----l~~La~~~~~~lkpgg~lIlSGIl~~q------------~~~V~~a~~~~gf~v~~ 285 (300)
T COG2264 240 EV----LVELAPDIKRLLKPGGRLILSGILEDQ------------AESVAEAYEQAGFEVVE 285 (300)
T ss_pred HH----HHHHHHHHHHHcCCCceEEEEeehHhH------------HHHHHHHHHhCCCeEeE
Confidence 21 247889999999999999999853211 23445555566777654
No 98
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.93 E-value=7e-09 Score=104.69 Aligned_cols=116 Identities=21% Similarity=0.277 Sum_probs=81.2
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCeeEEEecccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~ 329 (474)
..+|||||||+|.++...++.|. ..++++|+++.+++.|+++ ++...+.... ......+.||+|+++-..
T Consensus 162 g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~~-- 235 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANILA-- 235 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES-H--
T ss_pred CCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCCH--
Confidence 46999999999999999998875 5799999999999888765 5555443322 223345899999998432
Q ss_pred ccccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEee
Q 011964 330 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 390 (474)
Q Consensus 330 ~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~~ 390 (474)
.-...++..+.++|+|||+|+++..... ....+.+..++ +|+.+..
T Consensus 236 --~vL~~l~~~~~~~l~~~G~lIlSGIl~~------------~~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 236 --DVLLELAPDIASLLKPGGYLILSGILEE------------QEDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp --HHHHHHHHHCHHHEEEEEEEEEEEEEGG------------GHHHHHHHHHT-TEEEEEE
T ss_pred --HHHHHHHHHHHHhhCCCCEEEEccccHH------------HHHHHHHHHHC-CCEEEEE
Confidence 1224678889999999999999986321 13344555555 8887654
No 99
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.92 E-value=2e-08 Score=94.61 Aligned_cols=97 Identities=16% Similarity=0.058 Sum_probs=69.5
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC--------CCCCCeeEEEecc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCAR 325 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lp--------f~d~sFDlVvss~ 325 (474)
..+|||+|||+|.++..+++.......++++|+++.+ ....+.+..+|+.+.+ +++++||+|++..
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~ 106 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDA 106 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCC
Confidence 3789999999999999988764333579999999865 1123455666665532 4567899999864
Q ss_pred ccc---cccc-------cHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 326 CGV---DWDQ-------KDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 326 ~l~---~~~~-------d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
+.. .|.. ..+.++.++.++|+|||++++..+
T Consensus 107 ~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 107 APNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred CCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 311 1111 125789999999999999999754
No 100
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.88 E-value=5.3e-09 Score=100.13 Aligned_cols=136 Identities=15% Similarity=0.205 Sum_probs=110.1
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc---CCCcEEEeecccCCCCCCCCeeEEEeccccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er---g~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~ 330 (474)
...++|||||.|....+|...++ ..++-+|.|..|++.++.. ++.....+.|-+.|+|.+++||+|+++.. .||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~v--ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSls-lHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGV--EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLS-LHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcch--hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhh-hhh
Confidence 45799999999999999998875 6788999999999988765 44555677899999999999999999976 899
Q ss_pred cccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHH----------------HHHHHHHHHhhCceEEeeec
Q 011964 331 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKR----------------WNFVRDFVENLCWELVSQQD 392 (474)
Q Consensus 331 ~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~----------------w~~~~~la~~l~W~~~~~~~ 392 (474)
..+....+.++...|||+|.|+-+-....+..+++..-.... -+++-.++.+.+|.++.-+.
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDt 227 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDT 227 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceecc
Confidence 888889999999999999999998888877666554311111 24555678888998876543
No 101
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.87 E-value=2.2e-08 Score=94.89 Aligned_cols=97 Identities=21% Similarity=0.157 Sum_probs=70.7
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC-CCCCCCCeeEEEeccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCGV 328 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~-Lpf~d~sFDlVvss~~l~ 328 (474)
.+|||+|||+|.++..+++.. ....++++|.++.+++.++++ ++ ++.+..+++.. ++.....+|.|+...
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~--- 117 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG--- 117 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC---
Confidence 789999999999999987652 236899999999999988764 33 35566666543 222223467765432
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
..+...++.++.++|+|||++++..+.
T Consensus 118 --~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 118 --GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred --CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 134467999999999999999998763
No 102
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.86 E-value=2.8e-08 Score=96.60 Aligned_cols=101 Identities=15% Similarity=-0.028 Sum_probs=83.0
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHH-----------------cCCCcEEEeecccCCCCC--
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE-----------------RGLPAMIGSFASKQLPYP-- 314 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~e-----------------rg~~~~~~~~d~~~Lpf~-- 314 (474)
..+||+.|||.|..+.+|+++|. +|+|+|+|+..++.+.+ ++..+.+.++|..+++..
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 36999999999999999999985 79999999999988754 234667888898888642
Q ss_pred -CCCeeEEEeccccccccccH-HHHHHHHHhhcCCCcEEEEEeCC
Q 011964 315 -SLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 315 -d~sFDlVvss~~l~~~~~d~-~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
-+.||+|+=..+++++.++. .++.+.+.++|+|||.+++....
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 25899999777777775554 58999999999999999987764
No 103
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.85 E-value=4.2e-08 Score=98.70 Aligned_cols=101 Identities=17% Similarity=0.139 Sum_probs=73.5
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCeeEEEecccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlVvss~~l 327 (474)
..+|||+|||+|.++..+++.. ....++++|+|+.+++.|+++ ++ .+.+..+|... ++++++||+|+++--.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 3689999999999999999863 346899999999999988765 44 35666666533 3456689999986211
Q ss_pred c------------cccc------------cHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 328 V------------DWDQ------------KDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 328 ~------------~~~~------------d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. ++.+ ....++.++.++|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 0000 114678999999999999998653
No 104
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.85 E-value=2.8e-08 Score=95.28 Aligned_cols=92 Identities=20% Similarity=0.120 Sum_probs=69.4
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCeeEEEecccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~ 329 (474)
.+|||||||+|.++..+++.. ..++++|.++.+++.|+++ ++ ++.+...+......+.++||+|++..+..+
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~ 156 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAAPE 156 (212)
T ss_pred CEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCchh
Confidence 789999999999998887763 3789999999999888765 33 356666665433223478999998754322
Q ss_pred ccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 330 WDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 330 ~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
+..++.+.|+|||.+++...
T Consensus 157 -------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 157 -------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred -------hhHHHHHhcCCCcEEEEEEc
Confidence 34567899999999998764
No 105
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.84 E-value=3.8e-08 Score=96.56 Aligned_cols=122 Identities=20% Similarity=0.255 Sum_probs=88.7
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCC--CCCCCeeEEEecc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLSFDMLHCAR 325 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~Lp--f~d~sFDlVvss~ 325 (474)
..+|||+|||+|..+..++++- ....|+++|+.+.+.+.|++. ++ .+.+.+.|...+. ..-.+||+|+|+-
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 4799999999999999999883 237899999999999999875 22 3556777776654 3445799999973
Q ss_pred cccccc-----------------ccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEE
Q 011964 326 CGVDWD-----------------QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 388 (474)
Q Consensus 326 ~l~~~~-----------------~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~ 388 (474)
-.+.-. -+.+.+++-..++|||||++.+..+. ....++-+++.+..|+..
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~-------------erl~ei~~~l~~~~~~~k 190 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP-------------ERLAEIIELLKSYNLEPK 190 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH-------------HHHHHHHHHHHhcCCCce
Confidence 322211 12456788899999999999998763 123445566666666654
Q ss_pred e
Q 011964 389 S 389 (474)
Q Consensus 389 ~ 389 (474)
.
T Consensus 191 ~ 191 (248)
T COG4123 191 R 191 (248)
T ss_pred E
Confidence 4
No 106
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.83 E-value=1.9e-08 Score=93.42 Aligned_cols=104 Identities=22% Similarity=0.292 Sum_probs=80.1
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHH----HcCCC--cEEEeecccCCCCCCCCeeEEEecccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLP--AMIGSFASKQLPYPSLSFDMLHCARCG 327 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~----erg~~--~~~~~~d~~~Lpf~d~sFDlVvss~~l 327 (474)
..+|||+|||+|.+...|++.++. ..++|+|.|+.+++.|+ .++.+ +.+.++|+..-.+..+.||+|+=-..+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~-~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQ-SKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCC-CCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 348999999999999999999864 34899999999998775 33554 778888888777888899999843221
Q ss_pred --cccc-----ccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 328 --VDWD-----QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 328 --~~~~-----~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
+... ..+..++..+.++|+|||+|+|..-++
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 1111 112357889999999999999988654
No 107
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.83 E-value=3.2e-08 Score=94.25 Aligned_cols=113 Identities=18% Similarity=0.240 Sum_probs=70.8
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d 333 (474)
.-.|-|+|||.+.++..+... ..|...|.-.. +..+..+|+..+|++++++|+||+..++ +..+
T Consensus 73 ~~viaD~GCGdA~la~~~~~~----~~V~SfDLva~----------n~~Vtacdia~vPL~~~svDv~VfcLSL--MGTn 136 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNK----HKVHSFDLVAP----------NPRVTACDIANVPLEDESVDVAVFCLSL--MGTN 136 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S-------EEEEESS-S----------STTEEES-TTS-S--TT-EEEEEEES-----SS-
T ss_pred CEEEEECCCchHHHHHhcccC----ceEEEeeccCC----------CCCEEEecCccCcCCCCceeEEEEEhhh--hCCC
Confidence 358999999999999777533 35666676441 2346667999999999999999976553 4467
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEeeec
Q 011964 334 DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQD 392 (474)
Q Consensus 334 ~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~~~~ 392 (474)
...++.|..|+|||||.|+|.+..-. -. .-.......+.+||+...++.
T Consensus 137 ~~~fi~EA~RvLK~~G~L~IAEV~SR------f~----~~~~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 137 WPDFIREANRVLKPGGILKIAEVKSR------FE----NVKQFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEGGG-------S-----HHHHHHHHHCTTEEEEEEE-
T ss_pred cHHHHHHHHheeccCcEEEEEEeccc------Cc----CHHHHHHHHHHCCCeEEeccc
Confidence 78899999999999999999986321 11 123345567889999887654
No 108
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.80 E-value=3.5e-08 Score=104.73 Aligned_cols=105 Identities=18% Similarity=0.290 Sum_probs=78.3
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCC--CCCCCeeEEEecc--
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHCAR-- 325 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~~~~~~d~~~Lp--f~d~sFDlVvss~-- 325 (474)
..+|||+|||+|..+..+++... ...++++|.++.+++.++++ ++.+.+..+|+..++ +++++||.|++.-
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc 323 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAPC 323 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCCC
Confidence 37899999999999999988742 25899999999999888655 556677777877654 3467899999532
Q ss_pred --cc-c------ccccc----------HHHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 326 --CG-V------DWDQK----------DGILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 326 --~l-~------~~~~d----------~~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
.. . .|... ...+|.++.++|||||++++++....
T Consensus 324 s~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 324 SATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred CcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 10 0 11111 23689999999999999999986544
No 109
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.79 E-value=5.4e-08 Score=103.31 Aligned_cols=105 Identities=17% Similarity=0.198 Sum_probs=76.7
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEE--EeecccCCCC--CCCCeeEEEe---
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMI--GSFASKQLPY--PSLSFDMLHC--- 323 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~~~--~~~d~~~Lpf--~d~sFDlVvs--- 323 (474)
.+|||+|||+|..+..+++... ...++++|+++.+++.++++ ++.+.+ ..++....++ ++++||.|++
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaP 318 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAP 318 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcCC
Confidence 7899999999999999987632 45899999999999877654 555433 4455544443 5678999995
Q ss_pred -cc-cccccccc----------------HHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 011964 324 -AR-CGVDWDQK----------------DGILLLEVDRVLKPGGYFVWTSPLTNP 360 (474)
Q Consensus 324 -s~-~l~~~~~d----------------~~~~L~ei~RvLKPGG~lvis~~~~~~ 360 (474)
+. ..++-.++ +..+|.++.++|||||.+++++.....
T Consensus 319 cSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 319 CSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred CCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 21 11211121 357899999999999999999876654
No 110
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.76 E-value=1.4e-07 Score=98.99 Aligned_cols=120 Identities=13% Similarity=0.136 Sum_probs=82.4
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCC-CCCeeEEEecccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYP-SLSFDMLHCARCGVD 329 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~~~~~~d~~~Lpf~-d~sFDlVvss~~l~~ 329 (474)
.+|||+|||+|.++..++... ....++++|+|+.+++.|+++ +.++.+..+|.....++ .++||+|+|+--.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 589999999999999988652 246899999999999988765 45567777776543332 458999999643211
Q ss_pred cc--------------------cc----HHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCc
Q 011964 330 WD--------------------QK----DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCW 385 (474)
Q Consensus 330 ~~--------------------~d----~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W 385 (474)
-. .+ ...++.++.+.|+|||.+++... .. .-+.+.++.++.+|
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG-~~------------Q~e~V~~ll~~~Gf 398 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG-FD------------QGAAVRGVLAENGF 398 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC-cc------------HHHHHHHHHHHCCC
Confidence 00 01 12567777889999999887542 11 12355666677777
Q ss_pred eEE
Q 011964 386 ELV 388 (474)
Q Consensus 386 ~~~ 388 (474)
..+
T Consensus 399 ~~v 401 (423)
T PRK14966 399 SGV 401 (423)
T ss_pred cEE
Confidence 543
No 111
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.76 E-value=1e-07 Score=101.48 Aligned_cols=106 Identities=24% Similarity=0.201 Sum_probs=78.8
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCC----CCCCCeeEEEec-
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP----YPSLSFDMLHCA- 324 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~Lp----f~d~sFDlVvss- 324 (474)
.+|||+|||+|..+..+++.......|+++|+++.+++.++++ |+ ++.+..+|+..++ +.+++||.|++.
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~Da 333 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLDA 333 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEeC
Confidence 7899999999999999987622235799999999999877654 54 3567777877765 456789999962
Q ss_pred ---c-cccccccc----------------HHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 011964 325 ---R-CGVDWDQK----------------DGILLLEVDRVLKPGGYFVWTSPLTNP 360 (474)
Q Consensus 325 ---~-~l~~~~~d----------------~~~~L~ei~RvLKPGG~lvis~~~~~~ 360 (474)
. ..++..++ ...+|.++.++|||||++++++-....
T Consensus 334 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 334 PCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred CCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 1 11111121 347899999999999999999866543
No 112
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.75 E-value=2.5e-08 Score=102.31 Aligned_cols=103 Identities=24% Similarity=0.291 Sum_probs=73.5
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC---------------CCcEEEeecccCC----CC
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------------LPAMIGSFASKQL----PY 313 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg---------------~~~~~~~~d~~~L----pf 313 (474)
...+|||+|||.|.-+.-+...++ ..++|+|++...++.|++|- ..+.+..+|.... .+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 347999999999998877777654 68999999999999998773 2334455554322 13
Q ss_pred CC--CCeeEEEeccccccccccH---HHHHHHHHhhcCCCcEEEEEeCC
Q 011964 314 PS--LSFDMLHCARCGVDWDQKD---GILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 314 ~d--~sFDlVvss~~l~~~~~d~---~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
++ ..||+|-|-+++|+..... ..+|..+...|||||+|+.+.|.
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 33 5999999999877664444 36899999999999999999874
No 113
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.75 E-value=6.6e-08 Score=95.91 Aligned_cols=100 Identities=17% Similarity=0.219 Sum_probs=72.9
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC-----CCcEEEeecccCCCCCCCCeeEEEeccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg-----~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~ 328 (474)
..+|||+|||+|.++..++... ....++++|+++.+++.|+++. .++.+...|... ++++++||+|+++....
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYI 186 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcC
Confidence 3689999999999999998774 3468999999999999888752 245566666532 34457899999863211
Q ss_pred cc------c-------------------ccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 329 DW------D-------------------QKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 329 ~~------~-------------------~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
.. . .....++.++.++|+|||++++..
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 10 0 112467888899999999999854
No 114
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.75 E-value=6.5e-08 Score=94.95 Aligned_cols=136 Identities=18% Similarity=0.212 Sum_probs=92.3
Q ss_pred hhcchhhhhccccccccccchhhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHH
Q 011964 210 MMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS 289 (474)
Q Consensus 210 W~~~e~~~~~F~~~~~~yd~~~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~ 289 (474)
|++...+...+-+.+.||=-..+ ++.+++.......-......++||||+|.|..+..++.. ...+++.|.|..
T Consensus 54 ~f~S~T~iNG~LgRG~MFvfS~~---Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~ 127 (265)
T PF05219_consen 54 WFMSKTDINGILGRGSMFVFSEE---QFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPP 127 (265)
T ss_pred HHHhHHhHhhhhcCCcEEEecHH---HHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhh---cceEEeecCCHH
Confidence 44444444456666667733322 222333322100001123468999999999999999875 257899999999
Q ss_pred HHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 290 QVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 290 ~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
|....+++|..+. +..+..-.+..||+|.|.+++-. ..+|..+|++|++.|+|+|+++++..
T Consensus 128 Mr~rL~~kg~~vl----~~~~w~~~~~~fDvIscLNvLDR-c~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 128 MRWRLSKKGFTVL----DIDDWQQTDFKFDVISCLNVLDR-CDRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred HHHHHHhCCCeEE----ehhhhhccCCceEEEeehhhhhc-cCCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 9999999886533 22233334568999999987444 47888999999999999999998753
No 115
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.75 E-value=7.6e-08 Score=98.44 Aligned_cols=95 Identities=15% Similarity=0.048 Sum_probs=70.5
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCeeEEEecccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~ 329 (474)
.+|||||||+|.++..+++.......++++|.++.+++.|+++ +. ++.+..+|....+.+.++||+|++.....+
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g~~~ 161 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVGVDE 161 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCchHH
Confidence 7899999999999999987632223689999999999888763 44 355666776665555578999998744222
Q ss_pred ccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 330 WDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 330 ~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
....+.++|+|||.+++...
T Consensus 162 -------ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 162 -------VPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred -------hHHHHHHhcCCCCEEEEEeC
Confidence 23457789999999988653
No 116
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.74 E-value=5e-08 Score=90.36 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=71.7
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecccCCCCCCCCeeEEEecccccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg---~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~ 331 (474)
.+|||||||+|.++..+++++ ..++++|+++.+++.++++. .++.+...|+..+++++..||.|+++.- ++..
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~P-y~~~ 90 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLP-YNIS 90 (169)
T ss_pred CEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCC-cccH
Confidence 689999999999999999883 57999999999999988763 2467788899999888878999998744 4431
Q ss_pred ccHHHHHHHHHh--hcCCCcEEEEEe
Q 011964 332 QKDGILLLEVDR--VLKPGGYFVWTS 355 (474)
Q Consensus 332 ~d~~~~L~ei~R--vLKPGG~lvis~ 355 (474)
...+..+.. .+.++|.+++..
T Consensus 91 ---~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 91 ---TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred ---HHHHHHHHhcCCCcceEEEEEEH
Confidence 223333332 245788888754
No 117
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.73 E-value=1e-07 Score=93.10 Aligned_cols=102 Identities=21% Similarity=0.278 Sum_probs=81.8
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEeccccccccc
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~ 332 (474)
...+|||||+|+|.++..++++. +..+++..|. +..++.+++ ...+.+..+|.. -++|. +|+++..++++.|.+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d 173 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSD 173 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-H
T ss_pred CccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcch
Confidence 34789999999999999999884 4568888998 667877777 557888888877 67776 999999999999955
Q ss_pred cH-HHHHHHHHhhcCCC--cEEEEEeCCCCc
Q 011964 333 KD-GILLLEVDRVLKPG--GYFVWTSPLTNP 360 (474)
Q Consensus 333 d~-~~~L~ei~RvLKPG--G~lvis~~~~~~ 360 (474)
+. ..+|+++++.|+|| |.++|.++....
T Consensus 174 ~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 174 EDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp HHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 43 48999999999999 999999987654
No 118
>PRK00811 spermidine synthase; Provisional
Probab=98.73 E-value=1.8e-07 Score=94.14 Aligned_cols=102 Identities=18% Similarity=0.095 Sum_probs=75.0
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC----------CCcEEEeecccC-CCCCCCCeeEE
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------LPAMIGSFASKQ-LPYPSLSFDML 321 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg----------~~~~~~~~d~~~-Lpf~d~sFDlV 321 (474)
.+++||+||||+|..+..++++. ...+|+++|+++.+++.|++.- .++.+...|+.. +...+++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 35799999999999999998762 2368999999999999998741 234556666544 23346789999
Q ss_pred Eecccccccccc----HHHHHHHHHhhcCCCcEEEEEeC
Q 011964 322 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 322 vss~~l~~~~~d----~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
++... .++... ...+++.+.+.|+|||.+++...
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 155 IVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 98643 222221 25688999999999999998643
No 119
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.72 E-value=1.5e-07 Score=94.64 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=73.6
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCeeEEEecccc-
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG- 327 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~--~~~~~~d~~~Lpf~d~sFDlVvss~~l- 327 (474)
.+|||+|||+|.++..++... ....++++|+|+.+++.|+++ ++. +.+..+|... ++++++||+|+++--.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 589999999999999998863 346899999999999988765 443 5666666543 4555589999996211
Q ss_pred -----------ccccc------------cHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 328 -----------VDWDQ------------KDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 328 -----------~~~~~------------d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
..+.+ ....++.++.++|+|||++++...
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 01111 234678999999999999988654
No 120
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.71 E-value=8.9e-08 Score=102.19 Aligned_cols=106 Identities=19% Similarity=0.240 Sum_probs=77.2
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCCCCCCCeeEEEe----c
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHC----A 324 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~-~~~~~~d~~~Lpf~d~sFDlVvs----s 324 (474)
..+|||+|||+|..+..+++.......++++|+++.+++.++++ ++. +.+...|+..++ ++++||+|++ +
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcs 329 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCT 329 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCC
Confidence 37899999999999988876521234799999999999887654 543 566777777665 5678999995 2
Q ss_pred cccc-------cccc----------cHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 011964 325 RCGV-------DWDQ----------KDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (474)
Q Consensus 325 ~~l~-------~~~~----------d~~~~L~ei~RvLKPGG~lvis~~~~~~ 360 (474)
.... .|.. .+..+|.++.++|||||++++++.....
T Consensus 330 g~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 330 GTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred CcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 1111 0111 1236899999999999999999976654
No 121
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.70 E-value=7.8e-08 Score=97.85 Aligned_cols=99 Identities=16% Similarity=0.122 Sum_probs=73.0
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCeeEEEeccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlVvss~~l~ 328 (474)
.+|||+|||+|.++..++... ....++++|+|+.+++.|+++ ++ .+.+..+|... ++++++||+|+++--..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 589999999999999998763 346899999999999988765 43 35667667533 24456899999862111
Q ss_pred ------------cccc------------cHHHHHHHHHhhcCCCcEEEEEe
Q 011964 329 ------------DWDQ------------KDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 329 ------------~~~~------------d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
++.+ ....++.++.++|+|||.+++..
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 0100 11467899999999999999854
No 122
>PHA03411 putative methyltransferase; Provisional
Probab=98.70 E-value=9.3e-08 Score=95.20 Aligned_cols=126 Identities=11% Similarity=0.012 Sum_probs=88.0
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccccc-
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK- 333 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d- 333 (474)
.+|||+|||+|.++..++.+. ...+++++|+++.|++.++++...+.+...|+..+.. +.+||+|+++-.+.+....
T Consensus 66 grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCchh
Confidence 689999999999998887752 1258999999999999998875567777788776653 4689999998665543211
Q ss_pred ------------------HHHHHHHHHhhcCCCcEEEEEeCCCC-chhhhhhHHHHHHHHHHHHHHHhhCceEEe
Q 011964 334 ------------------DGILLLEVDRVLKPGGYFVWTSPLTN-PQAFLRNKENQKRWNFVRDFVENLCWELVS 389 (474)
Q Consensus 334 ------------------~~~~L~ei~RvLKPGG~lvis~~~~~-~~~~~~~~e~~~~w~~~~~la~~l~W~~~~ 389 (474)
...++....++|+|+|.+++.--... .+..+. -.+++.+.+..++....
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~-------~~~y~~~l~~~g~~~~~ 211 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMK-------SNKYLKWSKQTGLVTYA 211 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCC-------HHHHHHHHHhcCcEecC
Confidence 13567788899999998877632211 122221 23456667777766544
No 123
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.69 E-value=5.6e-08 Score=93.63 Aligned_cols=111 Identities=17% Similarity=0.116 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEe
Q 011964 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGS 305 (474)
Q Consensus 231 ~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~ 305 (474)
......+.+.+..+++ .+|||||||+|.++..|+........++++|..+...+.|+++ +. ++.+..
T Consensus 58 P~~~a~~l~~L~l~pg--------~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 58 PSMVARMLEALDLKPG--------DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp HHHHHHHHHHTTC-TT---------EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred HHHHHHHHHHHhcCCC--------CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 4455666777776666 8999999999999999987632335788999999999988876 44 566777
Q ss_pred ecccCCCCCCCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 306 FASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 306 ~d~~~Lpf~d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
+|...---+...||.|+++...-.. =..+.+.||+||++++-.-
T Consensus 130 gdg~~g~~~~apfD~I~v~~a~~~i-------p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 130 GDGSEGWPEEAPFDRIIVTAAVPEI-------PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp S-GGGTTGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEES
T ss_pred cchhhccccCCCcCEEEEeeccchH-------HHHHHHhcCCCcEEEEEEc
Confidence 7755433344689999998653221 2357778999999999553
No 124
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.69 E-value=1.2e-07 Score=92.52 Aligned_cols=113 Identities=14% Similarity=0.213 Sum_probs=79.8
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d 333 (474)
...|-|+|||.+.++..- + ..|...|... ++..+...|+.++|++|+|.|++|+.. .-+..+
T Consensus 181 ~~vIaD~GCGEakiA~~~--~----~kV~SfDL~a----------~~~~V~~cDm~~vPl~d~svDvaV~CL--SLMgtn 242 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASSE--R----HKVHSFDLVA----------VNERVIACDMRNVPLEDESVDVAVFCL--SLMGTN 242 (325)
T ss_pred ceEEEecccchhhhhhcc--c----cceeeeeeec----------CCCceeeccccCCcCccCcccEEEeeH--hhhccc
Confidence 467999999999887621 1 2455556533 244567779999999999999999643 445578
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEeeecce
Q 011964 334 DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDET 394 (474)
Q Consensus 334 ~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~~~~~~ 394 (474)
...++.|++|+|||||.++|.+.-..- .+ -..+....+.+||........+
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SRf------~d----v~~f~r~l~~lGF~~~~~d~~n 293 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSRF------SD----VKGFVRALTKLGFDVKHKDVSN 293 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhhc------cc----HHHHHHHHHHcCCeeeehhhhc
Confidence 888999999999999999998863211 11 1123445678899877655444
No 125
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.68 E-value=1e-07 Score=94.96 Aligned_cols=106 Identities=19% Similarity=0.278 Sum_probs=77.0
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCeeEEEec----c
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCA----R 325 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlVvss----~ 325 (474)
.+|||+|||+|..+..+++.......|+++|+++.+++.++++ ++ ++.+...|+..++...+.||.|++. .
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg 152 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSG 152 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCC
Confidence 7899999999999999887522224799999999999877654 44 3556667776666556679999963 1
Q ss_pred c-ccc--------cc--------ccHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 011964 326 C-GVD--------WD--------QKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (474)
Q Consensus 326 ~-l~~--------~~--------~d~~~~L~ei~RvLKPGG~lvis~~~~~~ 360 (474)
. ... +. .....+|.++.++|||||++++++.....
T Consensus 153 ~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 153 EGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred CcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 1 010 10 01235899999999999999999876543
No 126
>PRK04457 spermidine synthase; Provisional
Probab=98.67 E-value=1.4e-07 Score=94.00 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=74.3
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC------CCcEEEeecccCC-CCCCCCeeEEEeccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQL-PYPSLSFDMLHCARC 326 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg------~~~~~~~~d~~~L-pf~d~sFDlVvss~~ 326 (474)
+++|||||||+|.++..+++.. ....++++|+++++++.|++.. .++.+..+|+... .-..++||+|++...
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~ 145 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF 145 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence 4789999999999999998763 4578999999999999998761 2345666665432 222358999997521
Q ss_pred c-cccc--ccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 327 G-VDWD--QKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 327 l-~~~~--~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
- .... .....+++++.++|+|||.+++...
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 0 1111 1125799999999999999999643
No 127
>PRK01581 speE spermidine synthase; Validated
Probab=98.66 E-value=4.2e-07 Score=93.78 Aligned_cols=102 Identities=18% Similarity=0.187 Sum_probs=75.0
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc------------CCCcEEEeecccC-CCCCCCCee
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------------GLPAMIGSFASKQ-LPYPSLSFD 319 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er------------g~~~~~~~~d~~~-Lpf~d~sFD 319 (474)
.+++||+||||+|..+..+++.. ....|+.+|+++++++.|++. ..++.+...|+.. +.-.++.||
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45799999999999998888763 346899999999999999962 1245556666554 334456899
Q ss_pred EEEecccccccc-----ccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 320 MLHCARCGVDWD-----QKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 320 lVvss~~l~~~~-----~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
+|++... .... -....++..+++.|+|||.+++...
T Consensus 229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9998732 1111 1114689999999999999988743
No 128
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.65 E-value=2.6e-07 Score=98.22 Aligned_cols=106 Identities=15% Similarity=0.129 Sum_probs=78.5
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCC-CCCCCeeEEEec----
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLHCA---- 324 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~-~~~~~~d~~~Lp-f~d~sFDlVvss---- 324 (474)
.+|||+|||+|..+.++++.......|+++|+++.+++.++++ ++. +.+...|+..++ +.+++||.|++.
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCs 318 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCT 318 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCCC
Confidence 6899999999999999887622235899999999999887655 543 466777877766 556789999962
Q ss_pred cc-cccccc----------------cHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 011964 325 RC-GVDWDQ----------------KDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (474)
Q Consensus 325 ~~-l~~~~~----------------d~~~~L~ei~RvLKPGG~lvis~~~~~~ 360 (474)
.. .....+ .+.++|.++.++|||||++++++-....
T Consensus 319 g~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 319 SLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred CCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 11 111111 1246799999999999999999976554
No 129
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.64 E-value=4.2e-07 Score=86.72 Aligned_cols=143 Identities=22% Similarity=0.277 Sum_probs=91.2
Q ss_pred eEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHH----HHHcCCCcEE--EeecccCC--CC------CCCCeeEE
Q 011964 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL----TLERGLPAMI--GSFASKQL--PY------PSLSFDML 321 (474)
Q Consensus 256 ~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~----A~erg~~~~~--~~~d~~~L--pf------~d~sFDlV 321 (474)
+|||||||||..+.+++++ .+.....+.|..+..+.. ..+.+.+... ...|+..- |. ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 5999999999999999987 455677888888776532 2233322110 12233332 33 35689999
Q ss_pred Eecccccccc-ccHHHHHHHHHhhcCCCcEEEEEeCCCCch-----------hhhhhH---HHHHHHHHHHHHHHhhCce
Q 011964 322 HCARCGVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLTNPQ-----------AFLRNK---ENQKRWNFVRDFVENLCWE 386 (474)
Q Consensus 322 vss~~l~~~~-~d~~~~L~ei~RvLKPGG~lvis~~~~~~~-----------~~~~~~---e~~~~w~~~~~la~~l~W~ 386 (474)
+|..++|... ...+.+|+.+.++|+|||.|++..|-...- .+++.. ......+++..++.+.+++
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~ 186 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLE 186 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCc
Confidence 9998854332 233689999999999999999998855321 111111 1122236778888888888
Q ss_pred EEeeec-----ceeEEee
Q 011964 387 LVSQQD-----ETVVWKK 399 (474)
Q Consensus 387 ~~~~~~-----~~~iw~k 399 (474)
+..... ...||+|
T Consensus 187 l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 187 LEEDIDMPANNLLLVFRK 204 (204)
T ss_pred cCcccccCCCCeEEEEeC
Confidence 765432 3346654
No 130
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.62 E-value=8e-07 Score=87.92 Aligned_cols=101 Identities=17% Similarity=0.138 Sum_probs=70.5
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC--CCcEEEeecccC-CCC-CCCCeeEEEeccccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQ-LPY-PSLSFDMLHCARCGVDW 330 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg--~~~~~~~~d~~~-Lpf-~d~sFDlVvss~~l~~~ 330 (474)
.+|||+|||+|.++..+++.. ....++++|+++.+++.|+++- ....+...|... ++- ..++||+|+++--....
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 589999999999999988752 2357899999999999888651 123566666543 221 13579999987321110
Q ss_pred ------c---------------cc----HHHHHHHHHhhcCCCcEEEEEeC
Q 011964 331 ------D---------------QK----DGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 331 ------~---------------~d----~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. .+ ...++..+.++|||||.+++...
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 01 13677788899999999998764
No 131
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.59 E-value=1.9e-07 Score=89.67 Aligned_cols=138 Identities=15% Similarity=0.161 Sum_probs=91.0
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCC-----cEEEeecccCCCCCCCCeeEEEecccc
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP-----AMIGSFASKQLPYPSLSFDMLHCARCG 327 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~-----~~~~~~d~~~Lpf~d~sFDlVvss~~l 327 (474)
...++||.|+|.|..+..++-..+ ..|..+|+.+..++.|++.-.. ..+.+...+++..+.+.||+|++-.|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f--~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF--DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhc--CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 457899999999999998876633 6788899999999999864222 334555666665556799999999998
Q ss_pred ccccccH-HHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHH---HHHHHHHHHHHHhhCceEEeeec
Q 011964 328 VDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN---QKRWNFVRDFVENLCWELVSQQD 392 (474)
Q Consensus 328 ~~~~~d~-~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~---~~~w~~~~~la~~l~W~~~~~~~ 392 (474)
.|..++. -.+|+.+...|+|+|.+++-+.........-+.++ ...-..+..+.++.++.++.+..
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~ 201 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEK 201 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEecc
Confidence 8885433 48999999999999999998765443211111111 22345677888889998887643
No 132
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.59 E-value=3.9e-07 Score=97.20 Aligned_cols=104 Identities=18% Similarity=0.253 Sum_probs=75.4
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCC--CCCCCeeEEEeccc-
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCARC- 326 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~Lp--f~d~sFDlVvss~~- 326 (474)
.+|||+|||+|..+..+++.......++++|+++.+++.++++ ++ ++.+..+|+..++ ++ ++||+|++.--
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~Pc 330 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAPC 330 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCCC
Confidence 7899999999999999987621235899999999999887654 44 3566777776653 33 68999997421
Q ss_pred ----ccc------cccc----------HHHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 327 ----GVD------WDQK----------DGILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 327 ----l~~------~~~d----------~~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
.+. |... ...+|.++.++|||||.+++++....
T Consensus 331 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 331 SGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred CCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 000 1000 13579999999999999999886544
No 133
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=4.8e-07 Score=86.54 Aligned_cols=107 Identities=17% Similarity=0.233 Sum_probs=79.5
Q ss_pred hhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEe
Q 011964 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGS 305 (474)
Q Consensus 231 ~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~ 305 (474)
......+.+.+...++ .+|||||||+|..++.|++.. .+|+.+|..+...+.|+++ |. ++.+.+
T Consensus 58 P~~vA~m~~~L~~~~g--------~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~ 126 (209)
T COG2518 58 PHMVARMLQLLELKPG--------DRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRH 126 (209)
T ss_pred cHHHHHHHHHhCCCCC--------CeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEE
Confidence 3445567777776666 899999999999999999873 3889999999999999875 44 566666
Q ss_pred ecccCCCCC-CCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 306 FASKQLPYP-SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 306 ~d~~~Lpf~-d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
+|... -++ ...||.|+.+.+.-.. + ..+.+.|||||++++-.-
T Consensus 127 gDG~~-G~~~~aPyD~I~Vtaaa~~v-P------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 127 GDGSK-GWPEEAPYDRIIVTAAAPEV-P------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCccc-CCCCCCCcCEEEEeeccCCC-C------HHHHHhcccCCEEEEEEc
Confidence 66433 233 3689999988653333 2 245677999999999654
No 134
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.58 E-value=1.5e-07 Score=94.41 Aligned_cols=103 Identities=22% Similarity=0.280 Sum_probs=79.7
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC-----------CCcEEEeecc------cCCCCCCC
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----------LPAMIGSFAS------KQLPYPSL 316 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg-----------~~~~~~~~d~------~~Lpf~d~ 316 (474)
...++|+|||.|.-+...-+.++ ..++++|+++..++.|++|. ..+.+..+|. ..+++++.
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAgI--~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAGI--GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccceeccCCcccHhHhhhhcc--cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 36799999999999888887766 67899999999999998761 2355666653 23566777
Q ss_pred CeeEEEecccccccccc---HHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 317 SFDMLHCARCGVDWDQK---DGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 317 sFDlVvss~~l~~~~~d---~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
+||+|-|-+|+|.-... ...+|+++.+.|||||+|+-+.|..
T Consensus 196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 79999999885533222 3478999999999999999988743
No 135
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.57 E-value=5.3e-07 Score=97.75 Aligned_cols=100 Identities=15% Similarity=0.200 Sum_probs=70.7
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCeeEEEecccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlVvss~~l 327 (474)
..+|||+|||+|.++..++... ....++++|+|+.+++.|+++ ++ .+.+..+|... ++++++||+|+|+--.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 3589999999999999888652 346899999999999998865 33 34555555432 2445689999995321
Q ss_pred cc-------------cc--------cc----HHHHHHHHHhhcCCCcEEEEEe
Q 011964 328 VD-------------WD--------QK----DGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 328 ~~-------------~~--------~d----~~~~L~ei~RvLKPGG~lvis~ 355 (474)
+. +. .+ ...++.++.++|+|||.+++..
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 11 00 00 1246778899999999998853
No 136
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.57 E-value=6.2e-07 Score=86.93 Aligned_cols=128 Identities=17% Similarity=0.123 Sum_probs=84.0
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHH-HcCC----------------CcEEEeecccCCCCCC-C
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGL----------------PAMIGSFASKQLPYPS-L 316 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~-erg~----------------~~~~~~~d~~~Lpf~d-~ 316 (474)
.+||..|||.|.-...|+++| ..|+|+|+|+..++.+. +++. .+.+.++|...++-.. +
T Consensus 39 ~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 689999999999999999997 48999999999999884 3332 2345677777765433 4
Q ss_pred CeeEEEecccccccccc-HHHHHHHHHhhcCCCcEEEEEeC--CCCchhhhhhHHHHHHHHHHHHHHHhhCceEEe
Q 011964 317 SFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTSP--LTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 389 (474)
Q Consensus 317 sFDlVvss~~l~~~~~d-~~~~L~ei~RvLKPGG~lvis~~--~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~ 389 (474)
+||+|+=..+++-++++ ...+.+.+.++|+|||.+++... ...... .|+- .-.-++++++.. .+|++..
T Consensus 116 ~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~-GPPf--~v~~~ev~~l~~-~~f~i~~ 187 (218)
T PF05724_consen 116 KFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEME-GPPF--SVTEEEVRELFG-PGFEIEE 187 (218)
T ss_dssp SEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSS-SSS------HHHHHHHHT-TTEEEEE
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCC-CcCC--CCCHHHHHHHhc-CCcEEEE
Confidence 79999966555555444 46899999999999999444332 222111 1111 112245666666 5666544
No 137
>PHA03412 putative methyltransferase; Provisional
Probab=98.57 E-value=3.3e-07 Score=89.38 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=71.2
Q ss_pred CceEEEECCCCchHHHHhhhcCC--ceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKEL--LTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~--~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~ 331 (474)
..+|||+|||+|.++..++++.. ....|+++|+++.+++.|+++...+.+...|....++ +++||+|+++--.....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCcc
Confidence 36899999999999998876411 1358999999999999999876667778788766555 56899999984322110
Q ss_pred -c---------c-HHHHHHHHHhhcCCCcE
Q 011964 332 -Q---------K-DGILLLEVDRVLKPGGY 350 (474)
Q Consensus 332 -~---------d-~~~~L~ei~RvLKPGG~ 350 (474)
. . ...++..+.+++++|+.
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1 1 23578888887777776
No 138
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.56 E-value=2.1e-07 Score=90.66 Aligned_cols=100 Identities=24% Similarity=0.272 Sum_probs=80.6
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHH----HHcCC-CcEEEeecccCCC---CCCCCeeEEEeccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGL-PAMIGSFASKQLP---YPSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A----~erg~-~~~~~~~d~~~Lp---f~d~sFDlVvss~~ 326 (474)
..+||||||.|.+...+|+++ +...+.|+|+....+..| .+.++ ++.+.+.|+..+- +++++.|-|+..+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 479999999999999999986 456899999988776544 45588 8888888876652 55669999998876
Q ss_pred cccccccH--------HHHHHHHHhhcCCCcEEEEEeC
Q 011964 327 GVDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 327 l~~~~~d~--------~~~L~ei~RvLKPGG~lvis~~ 356 (474)
-.|+... ..+++.+.++|+|||.|.+.+-
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 6775432 3799999999999999999763
No 139
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.55 E-value=9.2e-07 Score=83.02 Aligned_cols=97 Identities=19% Similarity=0.108 Sum_probs=73.4
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCeeEEEeccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlVvss~~l~ 328 (474)
..+++|||||||+.+..++..+ +...++++|-++++++..+++ ++ ++.+..+++...--.-.+||.|+....
T Consensus 35 g~~l~DIGaGtGsi~iE~a~~~-p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg-- 111 (187)
T COG2242 35 GDRLWDIGAGTGSITIEWALAG-PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG-- 111 (187)
T ss_pred CCEEEEeCCCccHHHHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC--
Confidence 3799999999999999998443 557899999999998776554 44 345565655433111127999998865
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
...+.+|..+...|||||.++...-
T Consensus 112 ---~~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 112 ---GNIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred ---CCHHHHHHHHHHHcCcCCeEEEEee
Confidence 3457799999999999999999654
No 140
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.54 E-value=2.4e-07 Score=88.24 Aligned_cols=100 Identities=28% Similarity=0.427 Sum_probs=73.1
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC-CC--CCCCCeeEEEeccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LP--YPSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~-Lp--f~d~sFDlVvss~~ 326 (474)
..+||||||.|.+...++... +...++|+|+....+..+.++ ++ ++.+..+|+.. +. ++++++|.|+..+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 379999999999999999885 467899999999888666433 54 56677777666 22 66789999998765
Q ss_pred ccccccc--------HHHHHHHHHhhcCCCcEEEEEeC
Q 011964 327 GVDWDQK--------DGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 327 l~~~~~d--------~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
-.|... ...+|.++.++|+|||.+.+.+-
T Consensus 98 -DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 98 -DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred -CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 555332 13799999999999999999763
No 141
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=8.6e-07 Score=86.74 Aligned_cols=108 Identities=22% Similarity=0.236 Sum_probs=84.5
Q ss_pred HHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeeccc
Q 011964 236 QIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASK 309 (474)
Q Consensus 236 ~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~ 309 (474)
.|...+...++ .+|||.|.|+|.++.+|+..-.....++.+|..++..+.|+++ ++ .+.+...|..
T Consensus 85 ~I~~~~gi~pg--------~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~ 156 (256)
T COG2519 85 YIVARLGISPG--------SRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVR 156 (256)
T ss_pred HHHHHcCCCCC--------CEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccc
Confidence 45555566665 8999999999999999996423446899999999999999876 22 2555566666
Q ss_pred CCCCCCCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 310 QLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 310 ~Lpf~d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
+.-+++ .||+|+.- + +++-.++..++.+|||||.+++..|..
T Consensus 157 ~~~~~~-~vDav~LD-----m-p~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 157 EGIDEE-DVDAVFLD-----L-PDPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred cccccc-ccCEEEEc-----C-CChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 655555 89999843 3 677789999999999999999998854
No 142
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.51 E-value=6.9e-07 Score=89.19 Aligned_cols=101 Identities=14% Similarity=0.094 Sum_probs=72.0
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccC-CCCCCCCeeEEE
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 322 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg---------~~~~~~~~d~~~-Lpf~d~sFDlVv 322 (474)
.+++||+||||+|.++..+++.. ...+++.+|+++.+++.|++.- ..+.+...|+.. +.-.+++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 35699999999999999888764 2467999999999999888741 123344444322 122246899999
Q ss_pred ecccccccccc----HHHHHHHHHhhcCCCcEEEEEe
Q 011964 323 CARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 323 ss~~l~~~~~d----~~~~L~ei~RvLKPGG~lvis~ 355 (474)
+... ...... ...+++.+.+.|+|||.+++..
T Consensus 151 ~D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 151 VDST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EeCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 8643 222111 3578899999999999999874
No 143
>PRK03612 spermidine synthase; Provisional
Probab=98.49 E-value=1.6e-06 Score=94.49 Aligned_cols=102 Identities=14% Similarity=0.053 Sum_probs=75.4
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC------------CCcEEEeecccCC-CCCCCCee
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------------LPAMIGSFASKQL-PYPSLSFD 319 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg------------~~~~~~~~d~~~L-pf~d~sFD 319 (474)
.+++|||||||+|..+..++++. ...+++.+|+++++++.++++. .++++...|.... ...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 35789999999999999998763 2368999999999999998831 2345666665542 23346899
Q ss_pred EEEecccccccccc-----HHHHHHHHHhhcCCCcEEEEEeC
Q 011964 320 MLHCARCGVDWDQK-----DGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 320 lVvss~~l~~~~~d-----~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
+|++... ....+. ...+++.+.+.|||||.+++...
T Consensus 376 vIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 376 VIIVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred EEEEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 9998743 222111 13589999999999999998754
No 144
>PLN02366 spermidine synthase
Probab=98.48 E-value=1.1e-06 Score=89.37 Aligned_cols=101 Identities=14% Similarity=0.126 Sum_probs=74.1
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccCC--CCCCCCeeEE
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQL--PYPSLSFDML 321 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg---------~~~~~~~~d~~~L--pf~d~sFDlV 321 (474)
.+++||+||||.|..+..+++. .....++.+|+++.+++.|++.- .++.+..+|+... ..+++.||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 3579999999999999999877 23468999999999999998752 2355666664322 1235689999
Q ss_pred Eecccccccccc----HHHHHHHHHhhcCCCcEEEEEe
Q 011964 322 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 322 vss~~l~~~~~d----~~~~L~ei~RvLKPGG~lvis~ 355 (474)
++-.. .++... ...+++.+.+.|+|||.++...
T Consensus 170 i~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 170 IVDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 98633 222221 2468999999999999998754
No 145
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.46 E-value=1.4e-06 Score=80.05 Aligned_cols=121 Identities=16% Similarity=0.067 Sum_probs=96.8
Q ss_pred hhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccC
Q 011964 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ 310 (474)
Q Consensus 231 ~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~ 310 (474)
.-..+.+...+....+ .-|||+|.|||.++..++++++...++++++.+++......++...+.+..+|+.+
T Consensus 34 s~lA~~M~s~I~pesg--------lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~ 105 (194)
T COG3963 34 SILARKMASVIDPESG--------LPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFD 105 (194)
T ss_pred HHHHHHHHhccCcccC--------CeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhh
Confidence 4444555555554433 67999999999999999999999999999999999999888887667788888777
Q ss_pred CC-----CCCCCeeEEEeccccccccccHH-HHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 311 LP-----YPSLSFDMLHCARCGVDWDQKDG-ILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 311 Lp-----f~d~sFDlVvss~~l~~~~~d~~-~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
+. +.+..||.|+|..-+..+..... +.|+++...|.+||.++-....+.
T Consensus 106 l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~ 160 (194)
T COG3963 106 LRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPL 160 (194)
T ss_pred HHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 65 67788999999876666654443 789999999999999998776543
No 146
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.46 E-value=1.5e-06 Score=85.16 Aligned_cols=101 Identities=15% Similarity=0.076 Sum_probs=73.4
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCC-C-----CCCCCeeEE
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-----YPSLSFDML 321 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~L-p-----f~d~sFDlV 321 (474)
+++|||||||+|..+..++..-.....++++|.++++++.|+++ ++ .+.+..+++.+. + .++++||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 47899999999998888876522345899999999999988765 44 355666665442 1 124689999
Q ss_pred EeccccccccccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 322 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 322 vss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
+...- .+....++.++.++|||||.+++....+
T Consensus 149 fiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 149 FVDAD----KPNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred EECCC----HHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 87522 1333578999999999999988765433
No 147
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.34 E-value=3.5e-06 Score=89.96 Aligned_cols=93 Identities=18% Similarity=0.249 Sum_probs=69.3
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC----CCCCCCCeeEEEecc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ----LPYPSLSFDMLHCAR 325 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~----Lpf~d~sFDlVvss~ 325 (474)
.+|||+|||+|.++..+++.. ..++++|+|+.|++.|+++ ++ ++.+..+|+.. +++.+++||+|++.-
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP 375 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDP 375 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECc
Confidence 689999999999999999874 5899999999999988764 33 46677777643 345567899999863
Q ss_pred ccccccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 326 ~l~~~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
-.. . ....+..+.+ ++|+++++++-
T Consensus 376 Pr~---g-~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 376 PRA---G-AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred CCc---C-hHHHHHHHHh-cCCCeEEEEEe
Confidence 311 1 2345555555 69999988876
No 148
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=2.8e-06 Score=85.47 Aligned_cols=97 Identities=23% Similarity=0.300 Sum_probs=67.9
Q ss_pred eEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCCCCCeeEEEeccccccc
Q 011964 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (474)
Q Consensus 256 ~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~ 330 (474)
+|||||||+|..+..++... ....|+++|+|+.+++.|+++ ++ ++.+...+. .-+.. +.||+|+|+--.+.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl-f~~~~-~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVLVVQSDL-FEPLR-GKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeec-ccccC-CceeEEEeCCCCCCC
Confidence 79999999999999999884 346899999999999988765 43 222232221 11233 389999997321111
Q ss_pred c-----c-----c--------------HHHHHHHHHhhcCCCcEEEEEe
Q 011964 331 D-----Q-----K--------------DGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 331 ~-----~-----d--------------~~~~L~ei~RvLKPGG~lvis~ 355 (474)
. + + ...++.++.+.|+|||.+++..
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 0 0 1 1357888999999999988865
No 149
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.32 E-value=6.4e-06 Score=69.54 Aligned_cols=101 Identities=27% Similarity=0.332 Sum_probs=72.0
Q ss_pred EEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCC--C---cEEEeecccC--CCCCC-CCeeEEEeccccc
Q 011964 257 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--P---AMIGSFASKQ--LPYPS-LSFDMLHCARCGV 328 (474)
Q Consensus 257 VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~--~---~~~~~~d~~~--Lpf~d-~sFDlVvss~~l~ 328 (474)
++|+|||+|... .+.........++++|.+..++..+..... . +.+...+... +++.+ ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999965 333221111367779999999987554431 1 3455555554 78887 489999 665555
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~ 360 (474)
++.. ....+.++.++|+|+|.+++.......
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 5544 678999999999999999999876543
No 150
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.31 E-value=4e-06 Score=79.99 Aligned_cols=103 Identities=22% Similarity=0.309 Sum_probs=65.0
Q ss_pred CCceEEEECCCCch----HHHHhhh--c--CCceeEEEEecCCHHHHHHHHHc--------CC-----------------
Q 011964 253 GVRTILDIGCGYGS----FGAHLFS--K--ELLTMCIANYEASGSQVQLTLER--------GL----------------- 299 (474)
Q Consensus 253 ~~~~VLDIGCGtG~----~~~~La~--~--g~~~~~v~giD~s~~~l~~A~er--------g~----------------- 299 (474)
..-+|+-.||++|. ++..+.+ . ......|.|.|+++.+++.|++- ++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45689999999996 3333334 1 11247999999999999999742 11
Q ss_pred --------CcEEEeecccCCCCCCCCeeEEEeccccccccccH-HHHHHHHHhhcCCCcEEEEEe
Q 011964 300 --------PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 300 --------~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d~-~~~L~ei~RvLKPGG~lvis~ 355 (474)
.+.|...+..+.+.+.+.||+|+|-++++++..+. ..++..+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 13355555555334456899999999988885433 589999999999999999964
No 151
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.30 E-value=3.2e-06 Score=82.03 Aligned_cols=102 Identities=18% Similarity=0.267 Sum_probs=70.4
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCC-------CcE-----------------------
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-------PAM----------------------- 302 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~-------~~~----------------------- 302 (474)
.+..+|||||-.|.++..+++. +....+.|+|+.+..++.|++..- .+.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~-F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKD-FGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHh-hccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 3567999999999999999987 334679999999999999987510 000
Q ss_pred ---------------EEeecccCCCCCCCCeeEEEeccc----ccccccc-HHHHHHHHHhhcCCCcEEEEEe
Q 011964 303 ---------------IGSFASKQLPYPSLSFDMLHCARC----GVDWDQK-DGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 303 ---------------~~~~d~~~Lpf~d~sFDlVvss~~----l~~~~~d-~~~~L~ei~RvLKPGG~lvis~ 355 (474)
++.-..+-+.+....||+|.|..+ -+.|.++ ...+|..+.++|.|||+|++.-
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence 000000112234567999998633 1234332 2489999999999999999853
No 152
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.29 E-value=6.4e-06 Score=81.28 Aligned_cols=110 Identities=21% Similarity=0.239 Sum_probs=79.0
Q ss_pred HHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecc
Q 011964 235 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFAS 308 (474)
Q Consensus 235 ~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~ 308 (474)
..|...+.+.+| .+|||.|.|+|.++..|+..-.....++..|.+++..+.|+++ ++ .+.+...|.
T Consensus 30 ~~I~~~l~i~pG--------~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv 101 (247)
T PF08704_consen 30 SYILMRLDIRPG--------SRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV 101 (247)
T ss_dssp HHHHHHTT--TT---------EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G
T ss_pred HHHHHHcCCCCC--------CEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce
Confidence 345566677777 8999999999999999987622345889999999999999865 44 356777776
Q ss_pred cCCCCC---CCCeeEEEeccccccccccHHHHHHHHHhhc-CCCcEEEEEeCCC
Q 011964 309 KQLPYP---SLSFDMLHCARCGVDWDQKDGILLLEVDRVL-KPGGYFVWTSPLT 358 (474)
Q Consensus 309 ~~Lpf~---d~sFDlVvss~~l~~~~~d~~~~L~ei~RvL-KPGG~lvis~~~~ 358 (474)
..-.|+ ++.||.|+.- + +++-.++..+.++| ||||++++..|..
T Consensus 102 ~~~g~~~~~~~~~DavfLD-----l-p~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 102 CEEGFDEELESDFDAVFLD-----L-PDPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp GCG--STT-TTSEEEEEEE-----S-SSGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred ecccccccccCcccEEEEe-----C-CCHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 544442 3679999854 3 55667999999999 9999999998854
No 153
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.29 E-value=2e-06 Score=96.82 Aligned_cols=101 Identities=14% Similarity=0.184 Sum_probs=74.1
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC---CcEEEeecccCC-CCCCCCeeEEEecc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL-PYPSLSFDMLHCAR 325 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~---~~~~~~~d~~~L-pf~d~sFDlVvss~ 325 (474)
.++|||+|||+|.++..++..|. .+|+++|.|+.+++.|+++ ++ .+.+..+|+.+. .-..++||+|++.-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 37899999999999999998753 4799999999999988865 44 356677775432 11146899999863
Q ss_pred cccc----------ccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 326 CGVD----------WDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 326 ~l~~----------~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
-.+. ...+...++..+.++|+|||.++++..
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2111 112234678889999999999988764
No 154
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.28 E-value=8.5e-06 Score=79.53 Aligned_cols=124 Identities=16% Similarity=0.129 Sum_probs=77.2
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcE-EEeecccC-----CCCCCCCeeEEEecccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAM-IGSFASKQ-----LPYPSLSFDMLHCARCG 327 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~-~~~~d~~~-----Lpf~d~sFDlVvss~~l 327 (474)
..+|||+|||||.++..+++.|. ..++++|++..|+....+....+. +...++.. ++.+-..||+++++.+
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~- 152 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI- 152 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH-
Confidence 46899999999999999999863 689999999988876444433322 22223332 2222236787776643
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEeCCCCc--------hhhhhhH-HHHHHHHHHHHHHHhhCceEEe
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP--------QAFLRNK-ENQKRWNFVRDFVENLCWELVS 389 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~--------~~~~~~~-e~~~~w~~~~~la~~l~W~~~~ 389 (474)
+ .|..+.+.|+| |.+++..-+.-. .+-.++. .....-+++..++...+|....
T Consensus 153 --~------~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (228)
T TIGR00478 153 --S------ILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKK 214 (228)
T ss_pred --h------HHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEee
Confidence 2 57889999999 777765422211 1112222 2344455666667777777543
No 155
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.28 E-value=2.9e-06 Score=89.32 Aligned_cols=100 Identities=15% Similarity=0.124 Sum_probs=71.3
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC---CcEEEeecccCCC--C--CCCCeeEEEe
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQLP--Y--PSLSFDMLHC 323 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~---~~~~~~~d~~~Lp--f--~d~sFDlVvs 323 (474)
.+|||+|||+|.++...+..+ ...++++|.++.+++.|+++ ++ .+.+..+|+...- + ..++||+|++
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 689999999999988766554 35899999999999988765 44 3566777765431 1 3468999998
Q ss_pred cccccccc--------ccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 324 ARCGVDWD--------QKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 324 s~~l~~~~--------~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
.--.+.-. .+...++....++|+|||.++++..
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 73322111 1123455667899999999998664
No 156
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.25 E-value=7.3e-06 Score=83.66 Aligned_cols=95 Identities=20% Similarity=0.237 Sum_probs=67.5
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCC-CCCCeeEEEeccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPY-PSLSFDMLHCARCGV 328 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~Lpf-~d~sFDlVvss~~l~ 328 (474)
.+|||+|||+|.++..+++.+ ..++++|.++.+++.|+++ ++ ++.+..+|+..+.. .++.||+|++.--..
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 689999999999999999874 4799999999999888754 44 46778888766542 345799999873211
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
.....+.++..-++|++.++++.-
T Consensus 252 ----G~~~~~~~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 252 ----GIGKELCDYLSQMAPRFILYSSCN 275 (315)
T ss_pred ----CccHHHHHHHHHcCCCeEEEEECC
Confidence 111233333444788877777653
No 157
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.22 E-value=8.9e-06 Score=75.96 Aligned_cols=102 Identities=18% Similarity=0.164 Sum_probs=63.6
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----C----CCcEEEeecccC-C--C-CCCCCeeE
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G----LPAMIGSFASKQ-L--P-YPSLSFDM 320 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g----~~~~~~~~d~~~-L--p-f~d~sFDl 320 (474)
...+|||+|||+|..+..++... ....|+..|.++ .++..+.+ + ..+.+...+-.+ . . ...+.||+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45799999999999999998872 236788899888 66655433 2 123333332111 1 1 23468999
Q ss_pred EEeccccccccccHHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 321 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 321 Vvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
|+++.+++.- ...+.++.-+.++|+|+|.++++...
T Consensus 123 IlasDv~Y~~-~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 123 ILASDVLYDE-ELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp EEEES--S-G-GGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred EEEecccchH-HHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 9999996653 56678999999999999998887754
No 158
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.20 E-value=2.2e-05 Score=75.20 Aligned_cols=99 Identities=13% Similarity=0.054 Sum_probs=68.4
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC-CCCCCCCeeEEEeccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCGV 328 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~-Lpf~d~sFDlVvss~~l~ 328 (474)
.+|||+|||+|.++..++.++. ..++++|.++.+++.++++ ++ ++.+...|... ++...++||+|++.-- +
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP-y 131 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP-F 131 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC-C
Confidence 6899999999999987665543 5899999999999887764 33 35666666544 2223457999998744 2
Q ss_pred cccccHHHHHHHHHh--hcCCCcEEEEEeCC
Q 011964 329 DWDQKDGILLLEVDR--VLKPGGYFVWTSPL 357 (474)
Q Consensus 329 ~~~~d~~~~L~ei~R--vLKPGG~lvis~~~ 357 (474)
.. .-...++..+.. +|+|+|.+++....
T Consensus 132 ~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 132 RK-GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CC-ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 11 112345555544 48999988887653
No 159
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.17 E-value=5.7e-06 Score=82.74 Aligned_cols=83 Identities=14% Similarity=0.110 Sum_probs=63.7
Q ss_pred hHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC--CCcEEEeecccC
Q 011964 233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQ 310 (474)
Q Consensus 233 ~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg--~~~~~~~~d~~~ 310 (474)
..+.+.+.+....+ .+|||||||+|.++..+++++ ..++++|+++.|++.++++. .++.+..+|+..
T Consensus 30 i~~~i~~~l~~~~~--------~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~ 98 (272)
T PRK00274 30 ILDKIVDAAGPQPG--------DNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAEDNLTIIEGDALK 98 (272)
T ss_pred HHHHHHHhcCCCCc--------CeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhccCceEEEEChhhc
Confidence 44555555544333 689999999999999999985 37999999999999998753 357788888888
Q ss_pred CCCCCCCeeEEEeccc
Q 011964 311 LPYPSLSFDMLHCARC 326 (474)
Q Consensus 311 Lpf~d~sFDlVvss~~ 326 (474)
+++++-.+|.|+++.-
T Consensus 99 ~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 99 VDLSELQPLKVVANLP 114 (272)
T ss_pred CCHHHcCcceEEEeCC
Confidence 8876533688888743
No 160
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.17 E-value=1.1e-05 Score=82.63 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=87.4
Q ss_pred hhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEe
Q 011964 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGS 305 (474)
Q Consensus 231 ~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~ 305 (474)
..+.+.+.++.....| ..|||==||||.++....-.| ..++|.|++..|++-|+.+ ++ ...+..
T Consensus 183 P~lAR~mVNLa~v~~G--------~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~ 251 (347)
T COG1041 183 PRLARAMVNLARVKRG--------ELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYYGIEDYPVLK 251 (347)
T ss_pred HHHHHHHHHHhccccC--------CEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhhCcCceeEEE
Confidence 5566677777666665 789999999999988776555 5889999999999988866 33 232344
Q ss_pred e-cccCCCCCCCCeeEEEeccc-----ccccc---ccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 306 F-ASKQLPYPSLSFDMLHCARC-----GVDWD---QKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 306 ~-d~~~Lpf~d~sFDlVvss~~-----l~~~~---~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
+ |+..+|+++++||.|++--- -.... .-...+|..+.++||+||+++|..|
T Consensus 252 ~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 252 VLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 4 99999999999999998411 01110 1135899999999999999999887
No 161
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.14 E-value=9.3e-06 Score=80.58 Aligned_cols=82 Identities=15% Similarity=0.136 Sum_probs=63.6
Q ss_pred hhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecc
Q 011964 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFAS 308 (474)
Q Consensus 232 ~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg---~~~~~~~~d~ 308 (474)
...+.+.+.+...++ .+|||||||+|.++..+++++ ..++++|+++.+++.++++. .++.+..+|+
T Consensus 16 ~~~~~iv~~~~~~~~--------~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~ 84 (258)
T PRK14896 16 RVVDRIVEYAEDTDG--------DPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDA 84 (258)
T ss_pred HHHHHHHHhcCCCCc--------CeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEecc
Confidence 344555555544333 789999999999999999884 47999999999999988752 2467788888
Q ss_pred cCCCCCCCCeeEEEeccc
Q 011964 309 KQLPYPSLSFDMLHCARC 326 (474)
Q Consensus 309 ~~Lpf~d~sFDlVvss~~ 326 (474)
..++++ .||.|+++..
T Consensus 85 ~~~~~~--~~d~Vv~NlP 100 (258)
T PRK14896 85 LKVDLP--EFNKVVSNLP 100 (258)
T ss_pred ccCCch--hceEEEEcCC
Confidence 887776 4899999865
No 162
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.14 E-value=2.3e-05 Score=75.28 Aligned_cols=101 Identities=18% Similarity=0.148 Sum_probs=74.4
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCC-C-----CCCCCeeEE
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-----YPSLSFDML 321 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~L-p-----f~d~sFDlV 321 (474)
+++|||||+++|..+..+++.-.....++.+|.+++..+.|++. ++ .+.+..+++... + .+.+.||+|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 47999999999999999997633346899999999999988754 44 455666665431 2 224589999
Q ss_pred EeccccccccccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 322 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 322 vss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
+.-.. ..+...++..+.++|+|||.+++-...+
T Consensus 126 FiDa~----K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 126 FIDAD----KRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEST----GGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred EEccc----ccchhhHHHHHhhhccCCeEEEEccccc
Confidence 96532 2445678899999999999999976554
No 163
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.13 E-value=1.4e-05 Score=84.92 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=68.5
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC----CCCCCCCeeEEEecc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ----LPYPSLSFDMLHCAR 325 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~----Lpf~d~sFDlVvss~ 325 (474)
.+|||+|||+|.++..+++.. ..++++|+++.+++.|+++ ++ ++.+..+|+.. +++.+++||+|++.-
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 689999999999999998763 4789999999999988764 33 46677777654 234456899999763
Q ss_pred ccccccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 326 ~l~~~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
... .-...++..+.+ ++|++.++++-
T Consensus 371 Pr~---G~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 371 PRK---GCAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred CCC---CCCHHHHHHHHh-cCCCEEEEEcC
Confidence 311 112456666554 89998877764
No 164
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.13 E-value=2.1e-05 Score=79.38 Aligned_cols=101 Identities=12% Similarity=0.125 Sum_probs=71.7
Q ss_pred ceEEEECCCCch----HHHHhhhcC---CceeEEEEecCCHHHHHHHHHc--------CC--------------------
Q 011964 255 RTILDIGCGYGS----FGAHLFSKE---LLTMCIANYEASGSQVQLTLER--------GL-------------------- 299 (474)
Q Consensus 255 ~~VLDIGCGtG~----~~~~La~~g---~~~~~v~giD~s~~~l~~A~er--------g~-------------------- 299 (474)
-+|.-.||.||. ++..+.+.. .....|+|.|+++.+++.|++- ++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 689999999996 333333421 1136899999999999988753 11
Q ss_pred --------CcEEEeecccCCCCC-CCCeeEEEecccccccccc-HHHHHHHHHhhcCCCcEEEEEe
Q 011964 300 --------PAMIGSFASKQLPYP-SLSFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 300 --------~~~~~~~d~~~Lpf~-d~sFDlVvss~~l~~~~~d-~~~~L~ei~RvLKPGG~lvis~ 355 (474)
.+.|...+....+++ .+.||+|+|-++++++.+. ...++..+.+.|+|||+|++..
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 022444454444443 5789999999888887443 4589999999999999887754
No 165
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.10 E-value=1.5e-05 Score=77.01 Aligned_cols=147 Identities=14% Similarity=0.100 Sum_probs=98.7
Q ss_pred hhhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC-------CCcE
Q 011964 230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-------LPAM 302 (474)
Q Consensus 230 ~~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg-------~~~~ 302 (474)
.+.+.+.+++.-..++. ...+|||...|-|.++...+++|. ..|..++.++..++.|.-+. ..+.
T Consensus 117 tdP~~Dt~~Kv~~V~~~------~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~ 188 (287)
T COG2521 117 TDPLEDTLAKVELVKVK------RGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRELFEIAIK 188 (287)
T ss_pred cCcHHHHHhhhheeccc------cCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCCCCccccccccE
Confidence 35555566555443332 457999999999999999999974 46777888888888876541 2345
Q ss_pred EEeecccCC--CCCCCCeeEEEecccccccc--ccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHH
Q 011964 303 IGSFASKQL--PYPSLSFDMLHCARCGVDWD--QKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRD 378 (474)
Q Consensus 303 ~~~~d~~~L--pf~d~sFDlVvss~~l~~~~--~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~ 378 (474)
+..+|+.++ .|+|.|||+|+----.+... -.-+.+.+|++|+|||||.++-.+-.+...... ..-...+.+
T Consensus 189 iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG-----~d~~~gVa~ 263 (287)
T COG2521 189 IILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRG-----LDLPKGVAE 263 (287)
T ss_pred EecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccccc-----CChhHHHHH
Confidence 666676654 48999999998642222221 123579999999999999998776544432211 122345566
Q ss_pred HHHhhCceEEe
Q 011964 379 FVENLCWELVS 389 (474)
Q Consensus 379 la~~l~W~~~~ 389 (474)
.+.+.+|+.+.
T Consensus 264 RLr~vGF~~v~ 274 (287)
T COG2521 264 RLRRVGFEVVK 274 (287)
T ss_pred HHHhcCceeee
Confidence 67778888554
No 166
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.09 E-value=8.3e-06 Score=88.53 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=77.7
Q ss_pred cCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHH----cCC-CcEEEeecccCC--CCCCCCeeEEEec
Q 011964 252 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL-PAMIGSFASKQL--PYPSLSFDMLHCA 324 (474)
Q Consensus 252 ~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~e----rg~-~~~~~~~d~~~L--pf~d~sFDlVvss 324 (474)
.....+||||||.|.++..++... +...+.|+|++...+..+.+ .++ ++.+...++..+ -|+++++|.|+..
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 345789999999999999999885 45789999999877655543 344 344554454333 2788999999988
Q ss_pred cccccccccH--------HHHHHHHHhhcCCCcEEEEEeC
Q 011964 325 RCGVDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 325 ~~l~~~~~d~--------~~~L~ei~RvLKPGG~lvis~~ 356 (474)
+. -.|.... ..++..+.++|||||.+.+.+-
T Consensus 425 FP-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 425 FP-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred CC-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 76 6674321 3799999999999999999763
No 167
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.08 E-value=3.5e-05 Score=78.86 Aligned_cols=100 Identities=19% Similarity=0.186 Sum_probs=65.8
Q ss_pred cchhhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc-----CCC--
Q 011964 228 DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLP-- 300 (474)
Q Consensus 228 d~~~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er-----g~~-- 300 (474)
.....|+..+.+++..............+|||||||+|.....++.+. ....++++|+++.+++.|+++ ++.
T Consensus 89 P~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~ 167 (321)
T PRK11727 89 PGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGA 167 (321)
T ss_pred CcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCc
Confidence 445788888888875432212222345789999999998888887653 246899999999999988764 232
Q ss_pred cEEE-eecccCCC----CCCCCeeEEEeccccc
Q 011964 301 AMIG-SFASKQLP----YPSLSFDMLHCARCGV 328 (474)
Q Consensus 301 ~~~~-~~d~~~Lp----f~d~sFDlVvss~~l~ 328 (474)
+.+. +.+...+. .+++.||+|+|+--++
T Consensus 168 I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~ 200 (321)
T PRK11727 168 IRLRLQKDSKAIFKGIIHKNERFDATLCNPPFH 200 (321)
T ss_pred EEEEEccchhhhhhcccccCCceEEEEeCCCCc
Confidence 2222 12222221 2466899999986544
No 168
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.05 E-value=3.2e-05 Score=74.92 Aligned_cols=102 Identities=20% Similarity=0.177 Sum_probs=74.6
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCCcE--EEe-ecccC-CC-CCCCCeeEEEe
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAM--IGS-FASKQ-LP-YPSLSFDMLHC 323 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~~--~~~-~d~~~-Lp-f~d~sFDlVvs 323 (474)
++++|||||.+.|..+..|+..-.....++.+|.++++.+.|+++ |+... +.. +++.+ +. ...++||+|+.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 357999999999999999987632245899999999999999876 44432 333 23222 11 45689999995
Q ss_pred ccccccccccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 324 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 324 s~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
- +...+...+|..+.++|+|||.+++-....
T Consensus 139 D----adK~~yp~~le~~~~lLr~GGliv~DNvl~ 169 (219)
T COG4122 139 D----ADKADYPEYLERALPLLRPGGLIVADNVLF 169 (219)
T ss_pred e----CChhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence 4 222344679999999999999999866544
No 169
>PLN02476 O-methyltransferase
Probab=98.05 E-value=3.1e-05 Score=77.64 Aligned_cols=101 Identities=12% Similarity=0.123 Sum_probs=73.4
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccC-CC-C----CCCCeeEE
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP-Y----PSLSFDML 321 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~-Lp-f----~d~sFDlV 321 (474)
+++|||||+++|..+..++..-.....++.+|.+++..+.|++. |+ .+.+..+++.+ |+ + .+++||+|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 57999999999999999987421234689999999999888754 55 35566665433 22 1 24689999
Q ss_pred EeccccccccccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 322 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 322 vss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
+.-.- ..+...++..+.++|+|||.+++-...+
T Consensus 199 FIDa~----K~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278)
T PLN02476 199 FVDAD----KRMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278)
T ss_pred EECCC----HHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 96522 2334578999999999999998865443
No 170
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.03 E-value=4.5e-06 Score=82.85 Aligned_cols=98 Identities=21% Similarity=0.206 Sum_probs=78.0
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccccc-
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK- 333 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d- 333 (474)
..++|+|||.|..+..- +...+++.|.+...+..+++.+.. ....+|+..+|+.+.+||.+++..+++|+...
T Consensus 47 sv~~d~gCGngky~~~~-----p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 47 SVGLDVGCGNGKYLGVN-----PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred ceeeecccCCcccCcCC-----CcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 67999999999765322 235688999999998888876653 45566889999999999999999887777432
Q ss_pred -HHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 334 -DGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 334 -~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
...+++|+.|+|||||...+.....
T Consensus 121 RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEehh
Confidence 3489999999999999988876543
No 171
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.03 E-value=4.1e-05 Score=75.64 Aligned_cols=67 Identities=13% Similarity=0.148 Sum_probs=54.3
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecccCCCCCCCCee---EEEeccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFD---MLHCARC 326 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg---~~~~~~~~d~~~Lpf~d~sFD---lVvss~~ 326 (474)
.+|||||||+|.++..+++++ ..++++|+++.+++.++++. .++.+..+|+..++++ +|| +|+++..
T Consensus 31 ~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlP 103 (253)
T TIGR00755 31 DVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNLP 103 (253)
T ss_pred CEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcCC
Confidence 789999999999999999885 35999999999999887652 3566788888888775 466 7777643
No 172
>PLN02672 methionine S-methyltransferase
Probab=98.02 E-value=3e-05 Score=90.14 Aligned_cols=99 Identities=16% Similarity=0.139 Sum_probs=69.8
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC----C-----------------CcEEEeecccCCCC
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----L-----------------PAMIGSFASKQLPY 313 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg----~-----------------~~~~~~~d~~~Lpf 313 (474)
.+|||+|||+|..+..+++.. ....++++|+|+.+++.|+++. + ++.+...|.... +
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~-~ 197 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY-C 197 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-c
Confidence 589999999999999998874 2358999999999999886541 1 255666665443 2
Q ss_pred CC--CCeeEEEecccccc-------------c----------------c----cc----HHHHHHHHHhhcCCCcEEEEE
Q 011964 314 PS--LSFDMLHCARCGVD-------------W----------------D----QK----DGILLLEVDRVLKPGGYFVWT 354 (474)
Q Consensus 314 ~d--~sFDlVvss~~l~~-------------~----------------~----~d----~~~~L~ei~RvLKPGG~lvis 354 (474)
.+ ..||+|+++--.+. + . .+ ...++.+..++|+|||.+++.
T Consensus 198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 22 36999999622110 0 0 01 136788888999999988875
Q ss_pred e
Q 011964 355 S 355 (474)
Q Consensus 355 ~ 355 (474)
.
T Consensus 278 i 278 (1082)
T PLN02672 278 M 278 (1082)
T ss_pred E
Confidence 4
No 173
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.02 E-value=3.1e-05 Score=82.81 Aligned_cols=97 Identities=19% Similarity=0.268 Sum_probs=66.5
Q ss_pred CceEEEECCCCchHHHHhhhcC---CceeEEEEecCCHHHHHHHH----HcC--CCcEEEeecccCCCCCCCCeeEEEec
Q 011964 254 VRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLTL----ERG--LPAMIGSFASKQLPYPSLSFDMLHCA 324 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g---~~~~~v~giD~s~~~l~~A~----erg--~~~~~~~~d~~~Lpf~d~sFDlVvss 324 (474)
...|||||||+|.+....++.+ .....|++++-++.++...+ +++ -.+.+...+++.+..+. .+|+||+.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 4679999999999987765542 13578999999987664432 333 35788889999988775 89999997
Q ss_pred ccccccc--ccHHHHHHHHHhhcCCCcEEE
Q 011964 325 RCGVDWD--QKDGILLLEVDRVLKPGGYFV 352 (474)
Q Consensus 325 ~~l~~~~--~d~~~~L~ei~RvLKPGG~lv 352 (474)
... .+. +--...|....|.|||||.++
T Consensus 266 lLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 442 221 222357888999999999887
No 174
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.02 E-value=1.4e-05 Score=81.39 Aligned_cols=96 Identities=22% Similarity=0.299 Sum_probs=69.6
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHH----HcCCC--cEEEeecccCCCCCCCCeeEEEecccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLP--AMIGSFASKQLPYPSLSFDMLHCARCG 327 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~----erg~~--~~~~~~d~~~Lpf~d~sFDlVvss~~l 327 (474)
.++|||||||||.++..-++.|. ..+.++|.|.-+ +.|. .++.. +.+..+.++++.+|-..+|+|++.+..
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCc--ceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 47899999999999999999974 789999988744 5444 44554 344555666666666789999997543
Q ss_pred ccc--cccHHHHHHHHHhhcCCCcEEE
Q 011964 328 VDW--DQKDGILLLEVDRVLKPGGYFV 352 (474)
Q Consensus 328 ~~~--~~d~~~~L~ei~RvLKPGG~lv 352 (474)
+-. ..-.+.+|-.=.+.|+|||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 322 1223456777789999999887
No 175
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.98 E-value=8.5e-05 Score=74.14 Aligned_cols=136 Identities=18% Similarity=0.253 Sum_probs=91.5
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHH---HHHHc----C-------------------------CC
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ---LTLER----G-------------------------LP 300 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~---~A~er----g-------------------------~~ 300 (474)
...+||=-|||.|.++-.++.+|+ .+.+.|.|--|+- +.... + ++
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 346899999999999999999975 7899999998863 22111 0 00
Q ss_pred -------------cEEEeecccCCCCCC---CCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhh
Q 011964 301 -------------AMIGSFASKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL 364 (474)
Q Consensus 301 -------------~~~~~~d~~~Lpf~d---~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~ 364 (474)
.....+|...+..++ ++||+|++.+. +.-..+.-.+|..|.++|||||+++=..|........
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FF-IDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~ 211 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFF-IDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM 211 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEE-eechHHHHHHHHHHHHHhccCCEEEecCCccccCCCC
Confidence 001122222222233 68999997743 4444556689999999999999888777654332111
Q ss_pred --hh-HHHHHHHHHHHHHHHhhCceEEeeec
Q 011964 365 --RN-KENQKRWNFVRDFVENLCWELVSQQD 392 (474)
Q Consensus 365 --~~-~e~~~~w~~~~~la~~l~W~~~~~~~ 392 (474)
+. ....-.|+++..+.+.+||+.+.++.
T Consensus 212 ~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 212 SIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 00 11345689999999999999987554
No 176
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.98 E-value=0.00013 Score=72.25 Aligned_cols=123 Identities=20% Similarity=0.256 Sum_probs=80.5
Q ss_pred hhhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCCc--EE
Q 011964 230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPA--MI 303 (474)
Q Consensus 230 ~~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~--~~ 303 (474)
.+.+.+.+.+.+....- .....+||+|||+|..+..++.. .....++++|.|+.++..|.++ ++.. .+
T Consensus 130 TEE~V~~Vid~~~~~~~-----~~~~~ildlgtGSGaIslsll~~-L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v 203 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEH-----SKHTHILDLGTGSGAISLSLLHG-LPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEV 203 (328)
T ss_pred HHHHHHHHHHHHhhhhh-----cccceEEEecCCccHHHHHHHhc-CCCceEEEEeccHHHHHHHHHHHHHHhhcCceEE
Confidence 35666666666543222 12347999999999999998865 4467899999999999888765 2222 22
Q ss_pred Eeec-----ccCCCCCCCCeeEEEeccccccccc-------------------------cHHHHHHHHHhhcCCCcEEEE
Q 011964 304 GSFA-----SKQLPYPSLSFDMLHCARCGVDWDQ-------------------------KDGILLLEVDRVLKPGGYFVW 353 (474)
Q Consensus 304 ~~~d-----~~~Lpf~d~sFDlVvss~~l~~~~~-------------------------d~~~~L~ei~RvLKPGG~lvi 353 (474)
...+ ....+..++..|+++|+--.+...+ ..-.++.-+.|.|+|||.+.+
T Consensus 204 ~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 204 IHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred EecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 2211 1223456789999999733111100 011356778899999999999
Q ss_pred EeCCC
Q 011964 354 TSPLT 358 (474)
Q Consensus 354 s~~~~ 358 (474)
..-..
T Consensus 284 e~~~~ 288 (328)
T KOG2904|consen 284 ELVER 288 (328)
T ss_pred Eeccc
Confidence 87644
No 177
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.95 E-value=5e-05 Score=79.48 Aligned_cols=94 Identities=14% Similarity=0.176 Sum_probs=67.4
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCC-CCCCeeEEEeccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPY-PSLSFDMLHCARCGV 328 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~Lpf-~d~sFDlVvss~~l~ 328 (474)
.+|||+|||+|.++..++..+ ..++++|.++.+++.|+++ ++ ++.+..+|+..... ..++||+|++.--.-
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 689999999999999999764 4799999999999888765 34 46677777655321 124699999873311
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
.-...++..+. .++|++.++++.
T Consensus 312 ---G~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 312 ---GIGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred ---CCcHHHHHHHH-hcCCCeEEEEEe
Confidence 11234555554 479999888875
No 178
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.93 E-value=0.00013 Score=72.95 Aligned_cols=139 Identities=22% Similarity=0.255 Sum_probs=95.1
Q ss_pred CCceEEEECCCCchHHHHhhhcCCc-eeEEEEecCCHHHHHHH----HHcCCCc--EEEeecccCCC-CC--CCCeeEEE
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLT----LERGLPA--MIGSFASKQLP-YP--SLSFDMLH 322 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~-~~~v~giD~s~~~l~~A----~erg~~~--~~~~~d~~~Lp-f~--d~sFDlVv 322 (474)
.+-+||||.||.|.......+.... ..+|...|.++..++.. +++|+.. .|..+|+.+.. +. +-..++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 4579999999999988777655322 46889999999998654 4567643 67777755431 11 33568999
Q ss_pred eccccccccccH--HHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhH---HH--HHHH-------HHHHHHHHhhCceEE
Q 011964 323 CARCGVDWDQKD--GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK---EN--QKRW-------NFVRDFVENLCWELV 388 (474)
Q Consensus 323 ss~~l~~~~~d~--~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~---e~--~~~w-------~~~~~la~~l~W~~~ 388 (474)
.+.....+.++. ...|..+.+.+.|||+++++.-+++++-..-.. .+ .+.| .+|+++.+..+|+++
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K~ 294 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEKI 294 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCchh
Confidence 887644443322 367999999999999999998777654321111 11 1234 688889998888876
Q ss_pred eee
Q 011964 389 SQQ 391 (474)
Q Consensus 389 ~~~ 391 (474)
.+.
T Consensus 295 ~q~ 297 (311)
T PF12147_consen 295 DQR 297 (311)
T ss_pred hhe
Confidence 653
No 179
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.92 E-value=1.6e-05 Score=82.62 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=81.2
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCeeEEEeccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlVvss~~l~ 328 (474)
..++|+|||.|....++.... ...+++++.++..+..+... ++ ...+...+....||++++||.|.+..+.+
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~ 189 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC 189 (364)
T ss_pred ccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecc
Confidence 478999999999999987663 36788999998887665543 22 22346667888899999999999998877
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
|. ++...+++|++|+++|||+++..+..
T Consensus 190 ~~-~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 190 HA-PDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred cC-CcHHHHHHHHhcccCCCceEEeHHHH
Confidence 77 78889999999999999999987654
No 180
>PRK04148 hypothetical protein; Provisional
Probab=97.90 E-value=7.3e-05 Score=67.02 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=63.2
Q ss_pred CceEEEECCCCch-HHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCC-CCCeeEEEecccccccc
Q 011964 254 VRTILDIGCGYGS-FGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP-SLSFDMLHCARCGVDWD 331 (474)
Q Consensus 254 ~~~VLDIGCGtG~-~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~-d~sFDlVvss~~l~~~~ 331 (474)
..+|||||||+|. ++..|.+.| ..|+++|+++..++.++++++.+.. .|..+-++. -..+|+|.+...-
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G---~~ViaIDi~~~aV~~a~~~~~~~v~--dDlf~p~~~~y~~a~liysirpp---- 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESG---FDVIVIDINEKAVEKAKKLGLNAFV--DDLFNPNLEIYKNAKLIYSIRPP---- 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCC---CEEEEEECCHHHHHHHHHhCCeEEE--CcCCCCCHHHHhcCCEEEEeCCC----
Confidence 3689999999996 888888876 4899999999999999988765444 354443322 2469999987642
Q ss_pred ccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 332 QKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 332 ~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
++....+.++.+-+ |.-++|...
T Consensus 88 ~el~~~~~~la~~~--~~~~~i~~l 110 (134)
T PRK04148 88 RDLQPFILELAKKI--NVPLIIKPL 110 (134)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEcC
Confidence 23334555555443 455666544
No 181
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.90 E-value=7.8e-05 Score=74.42 Aligned_cols=102 Identities=19% Similarity=0.240 Sum_probs=72.2
Q ss_pred CceEEEECCCCch----HHHHhhhcCC----ceeEEEEecCCHHHHHHHHHc---------CCC----------------
Q 011964 254 VRTILDIGCGYGS----FGAHLFSKEL----LTMCIANYEASGSQVQLTLER---------GLP---------------- 300 (474)
Q Consensus 254 ~~~VLDIGCGtG~----~~~~La~~g~----~~~~v~giD~s~~~l~~A~er---------g~~---------------- 300 (474)
+-+|.-.||+||. ++..|.+... ....|.|.|++...++.|++- +++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5689999999995 4444444432 257899999999999988632 111
Q ss_pred ---------cEEEeecccCCCCCCCCeeEEEeccccccccccH-HHHHHHHHhhcCCCcEEEEEe
Q 011964 301 ---------AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 301 ---------~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d~-~~~L~ei~RvLKPGG~lvis~ 355 (474)
+.|...+...-++..+.||+|+|-++++.+.... .+++..++..|+|||+|++-.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 1222223222232445799999999988885433 589999999999999999953
No 182
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.89 E-value=5.9e-05 Score=70.89 Aligned_cols=100 Identities=23% Similarity=0.225 Sum_probs=66.2
Q ss_pred ceEEEECCCCchHHHHhhhcCCce--------eEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCeeE
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLT--------MCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDM 320 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~--------~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~Lpf~d~sFDl 320 (474)
..|||--||+|.+....+..+... ..+.|.|+++.+++.|+++ ++ .+.+...|+..+++.++++|.
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d~ 109 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVDA 109 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSCE
T ss_pred CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCCE
Confidence 689999999999987665442111 2488999999999988765 43 356778899999988889999
Q ss_pred EEeccccc-cccc--c----HHHHHHHHHhhcCCCcEEEEE
Q 011964 321 LHCARCGV-DWDQ--K----DGILLLEVDRVLKPGGYFVWT 354 (474)
Q Consensus 321 Vvss~~l~-~~~~--d----~~~~L~ei~RvLKPGG~lvis 354 (474)
|++.--.- .... + ...+++++.|+|++...+++.
T Consensus 110 IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 110 IVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 99973211 1111 1 136789999999994444443
No 183
>PLN02823 spermine synthase
Probab=97.89 E-value=0.0001 Score=76.00 Aligned_cols=101 Identities=16% Similarity=0.142 Sum_probs=71.9
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccC-CCCCCCCeeEEE
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 322 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg---------~~~~~~~~d~~~-Lpf~d~sFDlVv 322 (474)
.+++||.||+|.|..+..+++.. ....++.+|+++.+++.|++.. ..+.+...|+.. +.-.+++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 45789999999999999888753 2367999999999999998752 234455555433 233457899999
Q ss_pred ecccccccc---c---cHHHHHH-HHHhhcCCCcEEEEEe
Q 011964 323 CARCGVDWD---Q---KDGILLL-EVDRVLKPGGYFVWTS 355 (474)
Q Consensus 323 ss~~l~~~~---~---d~~~~L~-ei~RvLKPGG~lvis~ 355 (474)
+-.. -.+. . ....+++ .+.+.|+|||.+++..
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 7622 2110 0 1235777 8999999999988753
No 184
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=9.1e-05 Score=69.73 Aligned_cols=114 Identities=13% Similarity=0.108 Sum_probs=76.1
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC----CCcEEEeecccCCCCCCCCeeEEEecccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg----~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~ 329 (474)
.++|+|+|||||.++...+-.|. ..|+++|+.+++++.++++. ..+.+..+|..++ ++.||.|+++--+-.
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNPPFG~ 120 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMNPPFGS 120 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEECCCCcc
Confidence 46899999999999988877764 68999999999999988763 3677887777665 356889998743222
Q ss_pred c--cccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEe
Q 011964 330 W--DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 389 (474)
Q Consensus 330 ~--~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~ 389 (474)
+ ..|. .+|....+.- -.+.+-+...+ ...++..++..|.....
T Consensus 121 ~~rhaDr-~Fl~~Ale~s----~vVYsiH~a~~------------~~f~~~~~~~~G~~v~~ 165 (198)
T COG2263 121 QRRHADR-PFLLKALEIS----DVVYSIHKAGS------------RDFVEKFAADLGGTVTH 165 (198)
T ss_pred ccccCCH-HHHHHHHHhh----heEEEeecccc------------HHHHHHHHHhcCCeEEE
Confidence 2 1333 4555555553 45556554432 22335556666655443
No 185
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=8.2e-05 Score=70.97 Aligned_cols=94 Identities=19% Similarity=0.187 Sum_probs=68.5
Q ss_pred ceEEEECCCCchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcC---C------------CcEEEeecccCCCCCCCCe
Q 011964 255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERG---L------------PAMIGSFASKQLPYPSLSF 318 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg---~------------~~~~~~~d~~~Lpf~d~sF 318 (474)
-+.||||.|+|.++..++.. +.......|+|..++.++.++++- + ...+.++|....--+...|
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~Y 163 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPY 163 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCc
Confidence 67999999999999888744 222334489999999998887651 1 2345666766666667789
Q ss_pred eEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 319 DMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 319 DlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
|.||+... .....+++...|+|||.+++-.
T Consensus 164 DaIhvGAa-------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 164 DAIHVGAA-------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred ceEEEccC-------ccccHHHHHHhhccCCeEEEee
Confidence 99998733 2335677788899999998843
No 186
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.80 E-value=6.1e-05 Score=76.32 Aligned_cols=84 Identities=18% Similarity=0.181 Sum_probs=62.1
Q ss_pred hHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----C--CCcEEEee
Q 011964 233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSF 306 (474)
Q Consensus 233 ~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g--~~~~~~~~ 306 (474)
..+.+.+.+...++ .+|||||||+|.++..+++.+ ..++++|+++.+++.++++ + .++.+...
T Consensus 24 i~~~Iv~~~~~~~~--------~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~ 92 (294)
T PTZ00338 24 VLDKIVEKAAIKPT--------DTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEG 92 (294)
T ss_pred HHHHHHHhcCCCCc--------CEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 44455555544333 689999999999999999874 4689999999999988764 2 24667777
Q ss_pred cccCCCCCCCCeeEEEeccccccc
Q 011964 307 ASKQLPYPSLSFDMLHCARCGVDW 330 (474)
Q Consensus 307 d~~~Lpf~d~sFDlVvss~~l~~~ 330 (474)
|+...+++ .||.|+++.. +++
T Consensus 93 Dal~~~~~--~~d~VvaNlP-Y~I 113 (294)
T PTZ00338 93 DALKTEFP--YFDVCVANVP-YQI 113 (294)
T ss_pred CHhhhccc--ccCEEEecCC-ccc
Confidence 87666554 6899998744 444
No 187
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.73 E-value=0.00047 Score=65.39 Aligned_cols=98 Identities=15% Similarity=0.012 Sum_probs=65.6
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccC-CC-C-CCC-CeeEEEec
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP-Y-PSL-SFDMLHCA 324 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~-Lp-f-~d~-sFDlVvss 324 (474)
.+|||++||+|.++..++.+|. ..++++|.++.+++.++++ +. .+.+...|+.. +. + ... .||+|+.-
T Consensus 51 ~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 6899999999999999999974 4799999999999877654 33 24566666633 22 2 122 47888765
Q ss_pred cccccccccHHHHHHHHH--hhcCCCcEEEEEeC
Q 011964 325 RCGVDWDQKDGILLLEVD--RVLKPGGYFVWTSP 356 (474)
Q Consensus 325 ~~l~~~~~d~~~~L~ei~--RvLKPGG~lvis~~ 356 (474)
-- +.. .....++..+. .+|+++|.+++...
T Consensus 129 PP-y~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PP-FFN-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cC-CCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 32 211 22234444443 47889998777654
No 188
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.73 E-value=0.00012 Score=72.26 Aligned_cols=100 Identities=14% Similarity=0.053 Sum_probs=71.5
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccC-CC-C-----CCCCeeE
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP-Y-----PSLSFDM 320 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~-Lp-f-----~d~sFDl 320 (474)
+++|||||+++|..+..++..-.....++.+|.+++..+.|++. |+ .+.+..+++.+ ++ + ..++||+
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 47899999999999999986522346899999999999888754 43 34555555433 22 1 1368999
Q ss_pred EEeccccccccccHHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 321 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 321 Vvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
|+.-.- ......++..+.+.|+|||.+++-...
T Consensus 160 iFiDad----K~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 160 IFVDAD----KDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred EEecCC----HHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 996522 233356888889999999998875543
No 189
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.71 E-value=0.00056 Score=68.60 Aligned_cols=125 Identities=18% Similarity=0.107 Sum_probs=76.6
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc---CCCcE---EE-eecccCCCCCCCCeeEEEecc
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAM---IG-SFASKQLPYPSLSFDMLHCAR 325 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er---g~~~~---~~-~~d~~~Lpf~d~sFDlVvss~ 325 (474)
.+.+|||+|||+|..+-...+.-....+++.+|.|+.|++.++.- ..... .. ..-....++. ..|+|++++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s~ 110 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIASY 110 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEeh
Confidence 467999999999987665544311346789999999999887643 11111 00 0011123333 239999999
Q ss_pred cccccccc-HHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEe
Q 011964 326 CGVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 389 (474)
Q Consensus 326 ~l~~~~~d-~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~ 389 (474)
++...... ...+++.+.+.+.+ +|++.+++... ....-..+++.....++..++
T Consensus 111 ~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~--------Gf~~i~~aR~~l~~~~~~v~A 165 (274)
T PF09243_consen 111 VLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA--------GFRRIAEARDQLLEKGAHVVA 165 (274)
T ss_pred hhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH--------HHHHHHHHHHHHhhCCCceEC
Confidence 98877542 23566667666665 99999987543 223344555555444544443
No 190
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00069 Score=63.46 Aligned_cols=105 Identities=20% Similarity=0.185 Sum_probs=71.9
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHH----HHHcCCCcEEEeecccCCCCCCCCeeEEEecccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL----TLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~----A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~ 329 (474)
+..+||||||+|..+.+|++.........+.|+++.+++. |+.++..+..+..|...- +..++.|+++.+--...
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcCc
Confidence 5679999999999999999874445667789999988765 444556655555543322 33378888886522111
Q ss_pred --------------cc--cc----HHHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 330 --------------WD--QK----DGILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 330 --------------~~--~d----~~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
|. .+ .++++..+..+|.|.|.|++.....+
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 11 11 23677888889999999999876443
No 191
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.67 E-value=0.0005 Score=74.00 Aligned_cols=107 Identities=22% Similarity=0.348 Sum_probs=75.0
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCC-CCCCCeeEEE----e
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLH----C 323 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~-~~~~~~d~~~Lp-f~d~sFDlVv----s 323 (474)
..+|||++||+|.=+.++++.--....+++.|+++.-++..+++ |+. +.+...|...++ ...+.||.|+ |
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPC 193 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPC 193 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCC
Confidence 37899999999999999987622234799999999887766544 554 455556665553 3345799999 5
Q ss_pred ccccc---------cccc--------cHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 011964 324 ARCGV---------DWDQ--------KDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (474)
Q Consensus 324 s~~l~---------~~~~--------d~~~~L~ei~RvLKPGG~lvis~~~~~~ 360 (474)
+.... .|.. -+..+|..+.+.|||||+++.++-....
T Consensus 194 SG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 194 SGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred CCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 52211 1110 1146789999999999999999876654
No 192
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.63 E-value=0.0002 Score=72.59 Aligned_cols=97 Identities=20% Similarity=0.203 Sum_probs=68.4
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCeeEEEeccc
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlVvss~~ 326 (474)
..+.|||||||+|.++.+.++.|. ..|++++.|+ |.+.|++. .+ .+.++.+-.+++.+|. ..|+|++.-.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE-k~DviISEPM 252 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELPE-KVDVIISEPM 252 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCc--ceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCch-hccEEEeccc
Confidence 347899999999999999888875 6899999776 77777653 22 3445666777777775 7999998744
Q ss_pred cccccccHH--HHHHHHHhhcCCCcEEEEE
Q 011964 327 GVDWDQKDG--ILLLEVDRVLKPGGYFVWT 354 (474)
Q Consensus 327 l~~~~~d~~--~~L~ei~RvLKPGG~lvis 354 (474)
..-. -+.. ...-..+|.|||.|..+=+
T Consensus 253 G~mL-~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 253 GYML-VNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred hhhh-hhHHHHHHHHHHHhhcCCCCcccCc
Confidence 2222 2221 2233456999999998743
No 193
>PRK00536 speE spermidine synthase; Provisional
Probab=97.62 E-value=0.0006 Score=67.95 Aligned_cols=92 Identities=14% Similarity=0.128 Sum_probs=69.1
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccCCCCCCCCeeEEEe
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQLPYPSLSFDMLHC 323 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg---------~~~~~~~~d~~~Lpf~d~sFDlVvs 323 (474)
.+++||=||.|.|..++.++++. .+++.+|+++.+++.+++.- .++.+.. .. ..-..++||+|++
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~--~~~~~~~fDVIIv 145 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QL--LDLDIKKYDLIIC 145 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hh--hhccCCcCCEEEE
Confidence 56899999999999999999984 38999999999999998741 1222322 11 1112368999997
Q ss_pred ccccccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 324 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 324 s~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
-.. ....+.+.++|.|+|||.++...-
T Consensus 146 Ds~------~~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 146 LQE------PDIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred cCC------CChHHHHHHHHhcCCCcEEEECCC
Confidence 632 225688999999999999999654
No 194
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.60 E-value=0.0005 Score=68.21 Aligned_cols=137 Identities=18% Similarity=0.155 Sum_probs=80.3
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHH--------------------cCCC------------
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE--------------------RGLP------------ 300 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~e--------------------rg~~------------ 300 (474)
++.++||||||+-.+-..-+.. ...+|+..|.++..++..++ .|..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~--~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACE--WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGG--TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHH--hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 3478999999996664333333 24678999998877653321 0100
Q ss_pred -c-EEEeecccCC-CCCC-----CCeeEEEeccccccccccHH---HHHHHHHhhcCCCcEEEEEeCCCCch---hhhhh
Q 011964 301 -A-MIGSFASKQL-PYPS-----LSFDMLHCARCGVDWDQKDG---ILLLEVDRVLKPGGYFVWTSPLTNPQ---AFLRN 366 (474)
Q Consensus 301 -~-~~~~~d~~~L-pf~d-----~sFDlVvss~~l~~~~~d~~---~~L~ei~RvLKPGG~lvis~~~~~~~---~~~~~ 366 (474)
+ .+...|.... |+.. ..||+|++++|+.....+.+ .+++.+.++|||||+|++......+. +..+-
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F 213 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKF 213 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEec
Confidence 1 1344455443 3333 25999999999777666654 78999999999999999987644331 11111
Q ss_pred HHHHHHHHHHHHHHHhhCceEEeee
Q 011964 367 KENQKRWNFVRDFVENLCWELVSQQ 391 (474)
Q Consensus 367 ~e~~~~w~~~~~la~~l~W~~~~~~ 391 (474)
....-.-+.+++..++.++.....+
T Consensus 214 ~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 214 PCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp E---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ccccCCHHHHHHHHHHcCCEEEecc
Confidence 1122233566777778888776543
No 195
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.58 E-value=0.00039 Score=72.98 Aligned_cols=95 Identities=18% Similarity=0.176 Sum_probs=70.2
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCCCCCCCeeEEEecccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~-~~~~~~d~~~Lpf~d~sFDlVvss~~l~~ 329 (474)
.+|||++||+|.++..++... ....|+++|+++.+++.++++ ++. ..+...|+..+....+.||+|++.-
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~-~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP---- 133 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALET-GVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP---- 133 (382)
T ss_pred CEEEECCCcccHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence 579999999999999997652 135799999999999888764 443 3366666654322145799999752
Q ss_pred ccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 330 WDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 330 ~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
. ..+..++....+.+++||+++++.
T Consensus 134 ~-Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 134 F-GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred C-CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 1 233568888788899999999983
No 196
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.57 E-value=0.00062 Score=65.58 Aligned_cols=118 Identities=16% Similarity=0.205 Sum_probs=78.8
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCC---CCCCeeEEEecccccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPY---PSLSFDMLHCARCGVDWD 331 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf---~d~sFDlVvss~~l~~~~ 331 (474)
-++|||||=+..+...- .+ ...++.||.++. ...+...|....|. +++.||+|+++.+ +.+.
T Consensus 53 lrlLEVGals~~N~~s~--~~--~fdvt~IDLns~----------~~~I~qqDFm~rplp~~~~e~FdvIs~SLV-LNfV 117 (219)
T PF11968_consen 53 LRLLEVGALSTDNACST--SG--WFDVTRIDLNSQ----------HPGILQQDFMERPLPKNESEKFDVISLSLV-LNFV 117 (219)
T ss_pred ceEEeecccCCCCcccc--cC--ceeeEEeecCCC----------CCCceeeccccCCCCCCcccceeEEEEEEE-EeeC
Confidence 68999998755443322 22 256899999862 12233446556665 4678999999988 5555
Q ss_pred ccH---HHHHHHHHhhcCCCcE-----EEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEeeec
Q 011964 332 QKD---GILLLEVDRVLKPGGY-----FVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQD 392 (474)
Q Consensus 332 ~d~---~~~L~ei~RvLKPGG~-----lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~~~~ 392 (474)
+++ ...++.+.+.|+|+|. |++..|..-.... . ...-+.+..+.+.+||..+..+.
T Consensus 118 P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NS---R--y~~~~~l~~im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 118 PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNS---R--YMTEERLREIMESLGFTRVKYKK 181 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcc---c--ccCHHHHHHHHHhCCcEEEEEEe
Confidence 655 3899999999999999 8888775422110 0 11123457788999999888643
No 197
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.57 E-value=0.00073 Score=63.92 Aligned_cols=113 Identities=24% Similarity=0.273 Sum_probs=76.8
Q ss_pred hHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHH----HcCCC-cEEEeec
Q 011964 233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLP-AMIGSFA 307 (474)
Q Consensus 233 ~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~----erg~~-~~~~~~d 307 (474)
+.+.+.+.+..-+- .+....+++|||+|.|.=+..|+-.. +...++.+|....-+.+.+ +-+++ +.+....
T Consensus 31 ~~~Hi~DSL~~~~~---~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R 106 (184)
T PF02527_consen 31 WERHILDSLALLPF---LPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGR 106 (184)
T ss_dssp HHHHHHHHHGGGGC---S-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-
T ss_pred HHHHHHHHHHhhhh---hccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEee
Confidence 34455555543222 11222379999999999888876542 3467999999987765443 33665 7777777
Q ss_pred ccCCCCCCCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 308 SKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 308 ~~~Lpf~d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
++. +....+||+|++-.+ .....++.-+.+.|++||.+++.-
T Consensus 107 ~E~-~~~~~~fd~v~aRAv-----~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 107 AEE-PEYRESFDVVTARAV-----APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp HHH-TTTTT-EEEEEEESS-----SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ecc-cccCCCccEEEeehh-----cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 777 556679999998754 345678999999999999998864
No 198
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00071 Score=71.90 Aligned_cols=100 Identities=26% Similarity=0.386 Sum_probs=81.9
Q ss_pred eEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCC----CcEEEeecccCCCCCCCCeeEEEecccccccc
Q 011964 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL----PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (474)
Q Consensus 256 ~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~----~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~ 331 (474)
++|-+|||.-.+...+.+.|+ .+|+-+|.|+..++....++. ...+...++..+.|++.+||+|+--..+.+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~--~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGF--EDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCC--CCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 899999999999999998887 578889999999988877653 23467789999999999999999876655543
Q ss_pred ccH---------HHHHHHHHhhcCCCcEEEEEeCC
Q 011964 332 QKD---------GILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 332 ~d~---------~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
.+. ...+.++.|+|+|||+++....+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 322 25689999999999998887764
No 199
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.46 E-value=0.00054 Score=70.13 Aligned_cols=101 Identities=22% Similarity=0.171 Sum_probs=75.4
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC-CCcEEEeecccCCCCCCCCeeEEEeccccccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg-~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~ 332 (474)
....+|+|.|.|..+..+... ++ .+.++++....+-.++... ..+....+|+.+- .|. -|+|++-++++||.+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp--~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YP--HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPK--GDAIWMKWILHDWTD 251 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CC--CCceeecCHHHHHhhhhhhcCCcceeccccccc-CCC--cCeEEEEeecccCCh
Confidence 578999999999999999884 43 4777888877775555443 3344444454333 443 469999999999954
Q ss_pred cH-HHHHHHHHhhcCCCcEEEEEeCCCCc
Q 011964 333 KD-GILLLEVDRVLKPGGYFVWTSPLTNP 360 (474)
Q Consensus 333 d~-~~~L~ei~RvLKPGG~lvis~~~~~~ 360 (474)
+. .++|++++..|+|||.+++.+.+...
T Consensus 252 edcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 252 EDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 33 48999999999999999999986553
No 200
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.46 E-value=5.9e-05 Score=71.76 Aligned_cols=124 Identities=16% Similarity=0.163 Sum_probs=85.1
Q ss_pred ccccccccccchhhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC
Q 011964 219 SFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG 298 (474)
Q Consensus 219 ~F~~~~~~yd~~~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg 298 (474)
.|-+.++||-..++ ++.+++..... .+ ...+.++||+|+|.|..+..++.. ...|.+.+.|..|....++++
T Consensus 83 G~lgrGsMFifSe~---QF~klL~i~~p-~w-~~~~~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~rL~kk~ 154 (288)
T KOG3987|consen 83 GFLGRGSMFIFSEE---QFRKLLVIGGP-AW-GQEPVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRDRLKKKN 154 (288)
T ss_pred cccccCceEEecHH---HHHHHHhcCCC-cc-CCCCeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHHHHhhcC
Confidence 56666666643332 44555544321 11 123578999999999999999765 246788999999999988877
Q ss_pred CCcEEEeecccCCCCCCCCeeEEEeccccccccccHHHHHHHHHhhcCC-CcEEEEEe
Q 011964 299 LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKP-GGYFVWTS 355 (474)
Q Consensus 299 ~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKP-GG~lvis~ 355 (474)
.++.-. .+.--.+-.||+|.|...+- -..++-++|+.+..+|+| .|.++++-
T Consensus 155 ynVl~~----~ew~~t~~k~dli~clNlLD-Rc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 155 YNVLTE----IEWLQTDVKLDLILCLNLLD-RCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred Cceeee----hhhhhcCceeehHHHHHHHH-hhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 654322 11112234699999986633 336778999999999999 89888764
No 201
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.45 E-value=0.00039 Score=66.63 Aligned_cols=93 Identities=15% Similarity=0.131 Sum_probs=62.9
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCeeEEEecccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG 327 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~--~~~~~~d~~~Lpf~d~sFDlVvss~~l 327 (474)
..+|+|+-||.|.|+..+++.+ ....|+++|.++..++..+++ ++. +....+|...+.- .+.||.|++...
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp- 178 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP- 178 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T-
T ss_pred ceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh-
Confidence 3789999999999999999842 235799999999988776543 443 4456778777655 789999998743
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEE
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVW 353 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvi 353 (474)
.....+|..+.+++|+||.+.+
T Consensus 179 ----~~~~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 179 ----ESSLEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp ----SSGGGGHHHHHHHEEEEEEEEE
T ss_pred ----HHHHHHHHHHHHHhcCCcEEEC
Confidence 2223588899999999998753
No 202
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.41 E-value=0.0011 Score=66.68 Aligned_cols=101 Identities=17% Similarity=0.072 Sum_probs=72.9
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC---------CCcEEEeecccCC-CCCCCCeeEEE
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQL-PYPSLSFDMLH 322 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg---------~~~~~~~~d~~~L-pf~d~sFDlVv 322 (474)
.+++||-||-|.|..++.+++.. ....++.+|+++..++.+++.- ..+.+...|.... .-...+||+|+
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 34799999999999999999985 3578999999999999998762 1223333343322 21223899999
Q ss_pred eccccccccc----cHHHHHHHHHhhcCCCcEEEEEe
Q 011964 323 CARCGVDWDQ----KDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 323 ss~~l~~~~~----d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
+-.. -...+ ....+++.++|.|+++|.++...
T Consensus 155 ~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 155 VDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred EcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 7633 22111 12579999999999999999984
No 203
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.35 E-value=0.0011 Score=67.25 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=73.0
Q ss_pred hhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhc------CCceeEEEEecCCHHHHHHHHHc----CCC
Q 011964 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK------ELLTMCIANYEASGSQVQLTLER----GLP 300 (474)
Q Consensus 231 ~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~------g~~~~~v~giD~s~~~l~~A~er----g~~ 300 (474)
....+.+.+++....+ .+|+|-.||+|.+...+.+. ......++|+|+++.++..|+.+ +..
T Consensus 32 ~~i~~l~~~~~~~~~~--------~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKG--------DSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp HHHHHHHHHHHTT-TT--------EEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHhhhhcccc--------ceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 4455566666643333 68999999999998887762 11346899999999999887643 221
Q ss_pred ---cEEEeecccCCCCC--CCCeeEEEecccc--cccc-----------------ccH-HHHHHHHHhhcCCCcEEEEEe
Q 011964 301 ---AMIGSFASKQLPYP--SLSFDMLHCARCG--VDWD-----------------QKD-GILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 301 ---~~~~~~d~~~Lpf~--d~sFDlVvss~~l--~~~~-----------------~d~-~~~L~ei~RvLKPGG~lvis~ 355 (474)
..+...|....+.. ...||+|+++--+ ..|. ... -.++..+.+.|++||++.+..
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 22444554333322 4789999997221 1110 011 257888999999999998888
Q ss_pred C
Q 011964 356 P 356 (474)
Q Consensus 356 ~ 356 (474)
|
T Consensus 184 p 184 (311)
T PF02384_consen 184 P 184 (311)
T ss_dssp E
T ss_pred c
Confidence 6
No 204
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.32 E-value=0.0004 Score=64.81 Aligned_cols=99 Identities=19% Similarity=0.165 Sum_probs=59.1
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecc------cCCC--C--CCCCeeEEE
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS------KQLP--Y--PSLSFDMLH 322 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~------~~Lp--f--~d~sFDlVv 322 (474)
...+|||+||++|.|+..+.+++.....++++|+.+..-- . .+....+|. ..+. + ....||+|+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~----~--~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL----Q--NVSFIQGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----T--TEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccc----c--ceeeeecccchhhHHHhhhhhccccccCcceec
Confidence 4589999999999999999998645688999999875100 1 111111111 1111 1 126899999
Q ss_pred ecccc---ccccccH-------HHHHHHHHhhcCCCcEEEEEeCC
Q 011964 323 CARCG---VDWDQKD-------GILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 323 ss~~l---~~~~~d~-------~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
|-.+. -+...+. ...+.-+...|+|||.+++-...
T Consensus 97 ~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 97 SDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp E-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred cccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 86421 1111111 13455566789999999987764
No 205
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.29 E-value=0.0012 Score=65.33 Aligned_cols=102 Identities=18% Similarity=0.140 Sum_probs=71.1
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc---------CCCcEEEeecccCC-CCCCC-CeeEE
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQL-PYPSL-SFDML 321 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er---------g~~~~~~~~d~~~L-pf~d~-sFDlV 321 (474)
.+++||=||-|.|..+..+.+.. ...+++.+|+++..++.|++. ..++.+...|+... .-..+ .||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 46899999999999999998874 346899999999999999764 12455665554332 12223 89999
Q ss_pred Eecccccccccc----HHHHHHHHHhhcCCCcEEEEEeC
Q 011964 322 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 322 vss~~l~~~~~d----~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
+.-.. -..... ...+++.+.+.|+|||.+++...
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 155 IVDLT-DPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEESS-STTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeCC-CCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 97533 111111 25799999999999999998763
No 206
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.23 E-value=0.0028 Score=64.98 Aligned_cols=101 Identities=13% Similarity=0.017 Sum_probs=65.8
Q ss_pred ceEEEECCCCchHHHHhhhcC---CceeEEEEecCCHHHHHHHHHcCC----C-cEE--EeecccC----CCC--CCCCe
Q 011964 255 RTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLTLERGL----P-AMI--GSFASKQ----LPY--PSLSF 318 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g---~~~~~v~giD~s~~~l~~A~erg~----~-~~~--~~~d~~~----Lpf--~d~sF 318 (474)
..|+|+|||.|.=+..|++.- .....++++|+|.++++.+.++-. + +.+ ..++..+ ++- .....
T Consensus 78 ~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~ 157 (319)
T TIGR03439 78 SMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRP 157 (319)
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCc
Confidence 579999999999877665531 123578999999999988765422 2 333 3444322 221 12346
Q ss_pred eEEEecc-cccccccc-HHHHHHHHHh-hcCCCcEEEEEe
Q 011964 319 DMLHCAR-CGVDWDQK-DGILLLEVDR-VLKPGGYFVWTS 355 (474)
Q Consensus 319 DlVvss~-~l~~~~~d-~~~~L~ei~R-vLKPGG~lvis~ 355 (474)
.+++... ++-++.++ ...+|+++.+ .|+|||.|++..
T Consensus 158 r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 158 TTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 7776654 33344322 2378999999 999999999864
No 207
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.0012 Score=65.44 Aligned_cols=86 Identities=16% Similarity=0.176 Sum_probs=66.7
Q ss_pred hHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeeccc
Q 011964 233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASK 309 (474)
Q Consensus 233 ~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg---~~~~~~~~d~~ 309 (474)
..+.+.+.....++ .+|||||+|.|.+|..|++++ ..++++|+++.+++..+++. .+..++.+|+-
T Consensus 18 v~~kIv~~a~~~~~--------d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaL 86 (259)
T COG0030 18 VIDKIVEAANISPG--------DNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDAL 86 (259)
T ss_pred HHHHHHHhcCCCCC--------CeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccccceEEEeCchh
Confidence 35566666554443 789999999999999999985 46899999999998887763 45677888888
Q ss_pred CCCCCCC-CeeEEEeccccccc
Q 011964 310 QLPYPSL-SFDMLHCARCGVDW 330 (474)
Q Consensus 310 ~Lpf~d~-sFDlVvss~~l~~~ 330 (474)
..++++- .++.|+++.- ++.
T Consensus 87 k~d~~~l~~~~~vVaNlP-Y~I 107 (259)
T COG0030 87 KFDFPSLAQPYKVVANLP-YNI 107 (259)
T ss_pred cCcchhhcCCCEEEEcCC-Ccc
Confidence 8888764 6899998844 444
No 208
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.17 E-value=0.0011 Score=69.57 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=76.3
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC---CcEEEeecccCC-C---CCCCCeeEEE
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL-P---YPSLSFDMLH 322 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~---~~~~~~~d~~~L-p---f~d~sFDlVv 322 (474)
.++|||+=|=||.++.+.+..|. .+++.+|.|...++.|+++ ++ ...++++|+... . -....||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 37899999999999999998874 5899999999999999876 43 245676665432 1 2234899999
Q ss_pred eccccc--------cccccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 323 CARCGV--------DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 323 ss~~l~--------~~~~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
.---.+ ....+...++....++|+|||.+++++-..
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 731111 112334478899999999999999988543
No 209
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.16 E-value=0.0014 Score=61.96 Aligned_cols=121 Identities=14% Similarity=0.138 Sum_probs=76.0
Q ss_pred cchhhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCC--c
Q 011964 228 DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--A 301 (474)
Q Consensus 228 d~~~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~--~ 301 (474)
...+..-+.+.+.+... . ....+|||+-||+|.++...+.+|. ..++.+|.+...++..+++ +.. .
T Consensus 23 PT~drvrealFniL~~~-~-----~~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~~~~~ 94 (183)
T PF03602_consen 23 PTTDRVREALFNILQPR-N-----LEGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGLEDKI 94 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-------HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGE
T ss_pred CCcHHHHHHHHHHhccc-c-----cCCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCCCcce
Confidence 33455555666666543 0 1247899999999999999999985 6789999999998877765 332 3
Q ss_pred EEEeeccc-CCC---CCCCCeeEEEeccccccccccHHHHHHHHH--hhcCCCcEEEEEeCC
Q 011964 302 MIGSFASK-QLP---YPSLSFDMLHCARCGVDWDQKDGILLLEVD--RVLKPGGYFVWTSPL 357 (474)
Q Consensus 302 ~~~~~d~~-~Lp---f~d~sFDlVvss~~l~~~~~d~~~~L~ei~--RvLKPGG~lvis~~~ 357 (474)
.+...|+. .++ .....||+|++--- +........++..+. .+|+++|.+++....
T Consensus 95 ~v~~~d~~~~l~~~~~~~~~fDiIflDPP-Y~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 95 RVIKGDAFKFLLKLAKKGEKFDIIFLDPP-YAKGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp EEEESSHHHHHHHHHHCTS-EEEEEE--S-TTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred eeeccCHHHHHHhhcccCCCceEEEECCC-cccchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 44444422 221 24678999998633 222111256777776 799999999987654
No 210
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0012 Score=59.73 Aligned_cols=72 Identities=11% Similarity=0.158 Sum_probs=56.9
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCeeEEEeccc
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARC 326 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~~~~~~d~~~Lpf~d~sFDlVvss~~ 326 (474)
.+..++|+|||.|.+.....-. ....+.|+|+.+++++.+.++ .+.+.+.+++...+-+..+.||.++.+.-
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPP 123 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCC
Confidence 4578999999999988554433 346899999999999988765 45566788888888788899999998743
No 211
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.13 E-value=0.0021 Score=63.78 Aligned_cols=81 Identities=21% Similarity=0.217 Sum_probs=60.2
Q ss_pred hhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc--CCC----cEEE
Q 011964 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--GLP----AMIG 304 (474)
Q Consensus 231 ~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er--g~~----~~~~ 304 (474)
...+++|.+....++. ..|||||.|||.++..|.+.+ ..|+++++++.|+....++ |.+ ..+.
T Consensus 44 p~v~~~I~~ka~~k~t--------D~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~ 112 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPT--------DVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVL 112 (315)
T ss_pred HHHHHHHHhccCCCCC--------CEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEE
Confidence 4455566665555554 899999999999999999986 5889999999999888776 333 3345
Q ss_pred eecccCCCCCCCCeeEEEec
Q 011964 305 SFASKQLPYPSLSFDMLHCA 324 (474)
Q Consensus 305 ~~d~~~Lpf~d~sFDlVvss 324 (474)
.+|....++| .||.++++
T Consensus 113 ~gD~lK~d~P--~fd~cVsN 130 (315)
T KOG0820|consen 113 HGDFLKTDLP--RFDGCVSN 130 (315)
T ss_pred ecccccCCCc--ccceeecc
Confidence 5565555444 59999985
No 212
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.12 E-value=0.0023 Score=66.69 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=62.4
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCC-C-CC-------------
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL-P-YP------------- 314 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~L-p-f~------------- 314 (474)
.+|||++||+|.++..+++.. ..++++|.++.+++.|+++ ++ ++.+..+|+... + +.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 469999999999999888762 4799999999999888765 44 456666665442 1 10
Q ss_pred -CCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 315 -SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 315 -d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
...||+|+.---.. .-.+.++..+.+ |++.++++-.
T Consensus 285 ~~~~~D~v~lDPPR~---G~~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 285 KSYNFSTIFVDPPRA---GLDDETLKLVQA---YERILYISCN 321 (362)
T ss_pred cCCCCCEEEECCCCC---CCcHHHHHHHHc---cCCEEEEEeC
Confidence 22589998753211 112345555543 7787777653
No 213
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.11 E-value=0.0026 Score=65.61 Aligned_cols=119 Identities=13% Similarity=0.036 Sum_probs=88.3
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCeeEEEecccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG 327 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~--~~~~~~d~~~Lpf~d~sFDlVvss~~l 327 (474)
+.+|||+=+|.|.|+..++..+- ..|+++|+++..++..+++ ++. +....+|+...+..-+.||-|++...
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p- 265 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP- 265 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC-
Confidence 37899999999999999999875 3399999999999887765 333 44677888888766688999998754
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCc
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCW 385 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W 385 (474)
.....++....+.+++||.+.+.+.......+- ..-..++..+.+.+.
T Consensus 266 ----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~------~~~~~i~~~~~~~~~ 313 (341)
T COG2520 266 ----KSAHEFLPLALELLKDGGIIHYYEFVPEDDIEE------RPEKRIKSAARKGGY 313 (341)
T ss_pred ----CcchhhHHHHHHHhhcCcEEEEEeccchhhccc------chHHHHHHHHhhccC
Confidence 333568888999999999999998876442110 123455556665553
No 214
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.00055 Score=62.97 Aligned_cols=135 Identities=16% Similarity=0.283 Sum_probs=87.1
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc-CCCc--EEEee-------cccCCCCCCCCeeEEEec
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-GLPA--MIGSF-------ASKQLPYPSLSFDMLHCA 324 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er-g~~~--~~~~~-------d~~~Lpf~d~sFDlVvss 324 (474)
++|||+|.|.-.++..+.....+..+|...|-++..++..++. ..+. -+... ...+.......||.|+|+
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 6899999996555555544445667888889999888665542 1110 00000 011122345689999999
Q ss_pred cccccccccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEeee-cceeEEeecC
Q 011964 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ-DETVVWKKTS 401 (474)
Q Consensus 325 ~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~~~-~~~~iw~k~~ 401 (474)
.|++ +.+..+.+++-|.+.|+|.|..++..|-.. +..+.+.+..+..+|...... -...||++..
T Consensus 111 DClF-fdE~h~sLvdtIk~lL~p~g~Al~fsPRRg-----------~sL~kF~de~~~~gf~v~l~enyde~iwqrh~ 176 (201)
T KOG3201|consen 111 DCLF-FDEHHESLVDTIKSLLRPSGRALLFSPRRG-----------QSLQKFLDEVGTVGFTVCLEENYDEAIWQRHG 176 (201)
T ss_pred cchh-HHHHHHHHHHHHHHHhCcccceeEecCccc-----------chHHHHHHHHHhceeEEEecccHhHHHHHHHH
Confidence 9854 434556889999999999999998887432 223444566777787766643 3456888654
No 215
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.10 E-value=0.0012 Score=68.64 Aligned_cols=93 Identities=13% Similarity=0.125 Sum_probs=61.5
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCC-C-------C---C----
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL-P-------Y---P---- 314 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~L-p-------f---~---- 314 (474)
.+|||++||+|.++..|++.. ..++++|.++.+++.|+++ ++ ++.+..+|+..+ + + .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 369999999999999888763 4899999999999988865 44 456666665542 1 1 0
Q ss_pred -CCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 315 -SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 315 -d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
...||+|+.---.- .-...++..+. +|+++++++-.
T Consensus 276 ~~~~~d~v~lDPPR~---G~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 276 KSYNCSTIFVDPPRA---GLDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred ccCCCCEEEECCCCC---CCcHHHHHHHH---cCCcEEEEEcC
Confidence 11379888652211 11134445443 47888888653
No 216
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.08 E-value=0.004 Score=59.92 Aligned_cols=119 Identities=19% Similarity=0.185 Sum_probs=82.2
Q ss_pred cccchhhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCC----Cc
Q 011964 226 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL----PA 301 (474)
Q Consensus 226 ~yd~~~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~----~~ 301 (474)
|..-...+.+..++.+.. +.++||.||-|-|.....+.++.+ ..-+-++.++..++..+..+- ++
T Consensus 83 Mm~WEtpiMha~A~ai~t---------kggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~gw~ek~nV 151 (271)
T KOG1709|consen 83 MMRWETPIMHALAEAIST---------KGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDWGWREKENV 151 (271)
T ss_pred hhhhhhHHHHHHHHHHhh---------CCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhcccccccce
Confidence 334445666777776652 347999999999999998887743 334458999999998887653 33
Q ss_pred EEEeecccC-C-CCCCCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 302 MIGSFASKQ-L-PYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 302 ~~~~~d~~~-L-pf~d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
.+..+.-++ + .++|+.||-|+---. -..-++...+.+.+.|+|||+|.|-+...
T Consensus 152 iil~g~WeDvl~~L~d~~FDGI~yDTy-~e~yEdl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 152 IILEGRWEDVLNTLPDKHFDGIYYDTY-SELYEDLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred EEEecchHhhhccccccCcceeEeech-hhHHHHHHHHHHHHhhhcCCCceEEEecC
Confidence 333332222 2 278899999985422 13336666788899999999999987643
No 217
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.02 E-value=0.0054 Score=66.99 Aligned_cols=71 Identities=21% Similarity=0.204 Sum_probs=46.7
Q ss_pred CceEEEECCCCchHHHHhhhcCC-------ceeEEEEecCCHHHHHHHHHc----C-CCcEEEeecccC--C---CCCCC
Q 011964 254 VRTILDIGCGYGSFGAHLFSKEL-------LTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQ--L---PYPSL 316 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~-------~~~~v~giD~s~~~l~~A~er----g-~~~~~~~~d~~~--L---pf~d~ 316 (474)
..+|||.+||+|.+...++++.. ....++++|+++..+..++.+ + ....+...+... . .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 46899999999999988876521 136789999999999888754 1 122222222111 1 11124
Q ss_pred CeeEEEec
Q 011964 317 SFDMLHCA 324 (474)
Q Consensus 317 sFDlVvss 324 (474)
.||+|+++
T Consensus 112 ~fD~IIgN 119 (524)
T TIGR02987 112 LFDIVITN 119 (524)
T ss_pred cccEEEeC
Confidence 79999997
No 218
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.00 E-value=0.007 Score=58.77 Aligned_cols=98 Identities=16% Similarity=0.097 Sum_probs=68.9
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccC-C-----CCCCCCeeEE
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-L-----PYPSLSFDML 321 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~-L-----pf~d~sFDlV 321 (474)
++++||||.=||..+..++..-.....++++|+++...+.+.+. ++ .+.+..+.+.+ | ..+.++||+|
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 47899999888877777665533456899999999888776543 43 23344433221 2 1467899999
Q ss_pred EeccccccccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 322 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 322 vss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
+. -+|-.+....+.++.++||+||.+++--
T Consensus 154 Fv----DadK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 154 FV----DADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EE----ccchHHHHHHHHHHHhhcccccEEEEec
Confidence 84 3454444578999999999999999865
No 219
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.0091 Score=59.33 Aligned_cols=129 Identities=18% Similarity=0.188 Sum_probs=88.1
Q ss_pred HHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecc
Q 011964 235 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFAS 308 (474)
Q Consensus 235 ~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~ 308 (474)
..|..++...++ .+|||-|.|+|+++.++++.-.+..++...|+++.-.+.|++. ++ ++.+..-|.
T Consensus 95 a~I~~~L~i~PG--------svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDV 166 (314)
T KOG2915|consen 95 AMILSMLEIRPG--------SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDV 166 (314)
T ss_pred HHHHHHhcCCCC--------CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeec
Confidence 456677777777 8999999999999999998744556888899998877777653 43 345554455
Q ss_pred cCCC--CCCCCeeEEEeccccccccccHHHHHHHHHhhcCCCc-EEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCc
Q 011964 309 KQLP--YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGG-YFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCW 385 (474)
Q Consensus 309 ~~Lp--f~d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG-~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W 385 (474)
...- ..+..+|.|+.- + +.+-.++--++.+||.+| +|+-..|+. | .-++.-+++.+.+|
T Consensus 167 c~~GF~~ks~~aDaVFLD-----l-PaPw~AiPha~~~lk~~g~r~csFSPCI---------E---Qvqrtce~l~~~gf 228 (314)
T KOG2915|consen 167 CGSGFLIKSLKADAVFLD-----L-PAPWEAIPHAAKILKDEGGRLCSFSPCI---------E---QVQRTCEALRSLGF 228 (314)
T ss_pred ccCCccccccccceEEEc-----C-CChhhhhhhhHHHhhhcCceEEeccHHH---------H---HHHHHHHHHHhCCC
Confidence 4444 346789999854 2 344557777777999877 665555542 1 12244556677788
Q ss_pred eEEe
Q 011964 386 ELVS 389 (474)
Q Consensus 386 ~~~~ 389 (474)
..+.
T Consensus 229 ~~i~ 232 (314)
T KOG2915|consen 229 IEIE 232 (314)
T ss_pred ceEE
Confidence 7554
No 220
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.95 E-value=0.014 Score=60.11 Aligned_cols=93 Identities=13% Similarity=0.119 Sum_probs=63.6
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEeccccccccc
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~ 332 (474)
...++|||||++|.|+..|.++|. .|+++|..+ |-.... ....+.+...+.....-+.+.+|.|+|-.+ .
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~-l~~~L~-~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-----e 280 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGP-MAQSLM-DTGQVEHLRADGFKFRPPRKNVDWLVCDMV-----E 280 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechh-cCHhhh-CCCCEEEEeccCcccCCCCCCCCEEEEecc-----c
Confidence 457999999999999999999974 799999554 332222 233455555554443222668999998644 5
Q ss_pred cHHHHHHHHHhhcCCC--cEEEEEe
Q 011964 333 KDGILLLEVDRVLKPG--GYFVWTS 355 (474)
Q Consensus 333 d~~~~L~ei~RvLKPG--G~lvis~ 355 (474)
.+..++.-|.+.|..| ..+|+.-
T Consensus 281 ~P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 281 KPARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred CHHHHHHHHHHHHhcCcccEEEEEE
Confidence 6677888888888776 3555544
No 221
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.0077 Score=58.84 Aligned_cols=130 Identities=15% Similarity=0.234 Sum_probs=90.4
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEE-eecccCCC---CCCCCeeEEEeccccc
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIG-SFASKQLP---YPSLSFDMLHCARCGV 328 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~-~~d~~~Lp---f~d~sFDlVvss~~l~ 328 (474)
+.+.+||||.-||.|+..+.++|. ..|+++|....++.--.+....+... ..++..+. +.. ..|+++|--+++
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~-~~d~~v~DvSFI 155 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTE-KPDLIVIDVSFI 155 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHccc-CCCeEEEEeehh
Confidence 458999999999999999999975 68999999988887666655544432 22333332 333 678999875544
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeCCCCc--------hhhhhhH-HHHHHHHHHHHHHHhhCceEEe
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP--------QAFLRNK-ENQKRWNFVRDFVENLCWELVS 389 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~--------~~~~~~~-e~~~~w~~~~~la~~l~W~~~~ 389 (474)
.. ..+|..+..+++|+|.++...-+.-. .+..+++ .....-..+..+++..+|...-
T Consensus 156 SL----~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~g 221 (245)
T COG1189 156 SL----KLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKG 221 (245)
T ss_pred hH----HHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEee
Confidence 43 56999999999999999876543321 1122333 2345567788888888988654
No 222
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.89 E-value=0.0029 Score=64.19 Aligned_cols=85 Identities=7% Similarity=0.001 Sum_probs=60.2
Q ss_pred HHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC---CCcEEEeecccC
Q 011964 234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQ 310 (474)
Q Consensus 234 ~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg---~~~~~~~~d~~~ 310 (474)
.+++.+.+...++ ..+||.+||.|..+..+++.......|+|+|.++.+++.|+++- -++.+...+...
T Consensus 8 l~Evl~~L~~~pg--------~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~ 79 (296)
T PRK00050 8 LDEVVDALAIKPD--------GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN 79 (296)
T ss_pred HHHHHHhhCCCCC--------CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence 3455555554443 68999999999999999987433468999999999999998763 245566666554
Q ss_pred CC--CCCC--CeeEEEeccc
Q 011964 311 LP--YPSL--SFDMLHCARC 326 (474)
Q Consensus 311 Lp--f~d~--sFDlVvss~~ 326 (474)
+. .+++ +||.|++...
T Consensus 80 l~~~l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 80 LKEVLAEGLGKVDGILLDLG 99 (296)
T ss_pred HHHHHHcCCCccCEEEECCC
Confidence 43 2222 7999998543
No 223
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.89 E-value=0.0018 Score=65.33 Aligned_cols=103 Identities=18% Similarity=0.182 Sum_probs=68.8
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC---CcEEEeecccC-CC--CCCCCeeEEEe
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQ-LP--YPSLSFDMLHC 323 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~---~~~~~~~d~~~-Lp--f~d~sFDlVvs 323 (474)
..+|||+=|=||.|+.+.+..| +.+++.+|.|..+++.++++ ++ ...+...|+.. +. -..+.||+|++
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 3799999999999999988775 35789999999999998876 43 34556555433 11 12458999998
Q ss_pred cccc-----ccccccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 324 ARCG-----VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 324 s~~l-----~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
---. .....+...++..+.++|+|||.++++....
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 4211 1112344578889999999999999877543
No 224
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.87 E-value=0.0025 Score=61.32 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=61.9
Q ss_pred hhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc-----------CC
Q 011964 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----------GL 299 (474)
Q Consensus 231 ~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er-----------g~ 299 (474)
......+.+.+...++ ...+|||||.|......+-.. .....+|+|+.+...+.|... +.
T Consensus 28 ~~~~~~il~~~~l~~~--------dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~ 98 (205)
T PF08123_consen 28 PEFVSKILDELNLTPD--------DVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGK 98 (205)
T ss_dssp HHHHHHHHHHTT--TT---------EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB
T ss_pred HHHHHHHHHHhCCCCC--------CEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444455555554444 799999999999877665431 224578999998877665431 22
Q ss_pred ---CcEEEeecccCCCCCC---CCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 300 ---PAMIGSFASKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 300 ---~~~~~~~d~~~Lpf~d---~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
++.+..+|..+.++.. ...|+|+++... +.++....|.++..-||+|-+++-..+
T Consensus 99 ~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs~~~ 159 (205)
T PF08123_consen 99 RPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIISTKP 159 (205)
T ss_dssp ---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEESS-
T ss_pred ccccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEECCC
Confidence 2334444433222111 246999998653 334555678888899999988765443
No 225
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.81 E-value=0.02 Score=54.28 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=82.1
Q ss_pred cccccccccchhhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc--
Q 011964 220 FRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-- 297 (474)
Q Consensus 220 F~~~~~~yd~~~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er-- 297 (474)
++.+...-...+..-+.+.+.+.... -...++||+=+|+|.++...+.+|. ..++.+|.+...++..+++
T Consensus 16 ~p~~~~~RPT~drVREalFNil~~~~------i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~ 87 (187)
T COG0742 16 TPDGPGTRPTTDRVREALFNILAPDE------IEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLK 87 (187)
T ss_pred CCCCCCcCCCchHHHHHHHHhccccc------cCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHH
Confidence 33333333444555556666665420 1247999999999999999999975 6788899999998887766
Q ss_pred --C--CCcEEEeecccCC-CCCCC--CeeEEEecccccccc-ccHHHHHHH--HHhhcCCCcEEEEEeCCC
Q 011964 298 --G--LPAMIGSFASKQL-PYPSL--SFDMLHCARCGVDWD-QKDGILLLE--VDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 298 --g--~~~~~~~~d~~~L-pf~d~--sFDlVvss~~l~~~~-~d~~~~L~e--i~RvLKPGG~lvis~~~~ 358 (474)
+ ....+...|+... +-... .||+|+.--- ++.. -+....+.. -..+|+|+|.+++.....
T Consensus 88 ~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP-y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 88 ALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP-YAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC-CccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 3 3344554554432 22222 4999997633 2221 111223333 567899999999977543
No 226
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.70 E-value=0.0056 Score=64.17 Aligned_cols=96 Identities=8% Similarity=0.010 Sum_probs=71.1
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCC-CCCCCeeEEEeccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLHCARCGV 328 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~-~~~~~~d~~~Lp-f~d~sFDlVvss~~l~ 328 (474)
-+|||+-||+|..+..++.+......|+++|+++..++.++++ ++. +.+...|+..+- .....||+|..-- +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP--f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP--F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--C
Confidence 4799999999999999998721225799999999999888765 332 455555655442 1235799998642 2
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
..+..++..+.+.+++||.+.++-
T Consensus 124 ---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 233569999999999999999984
No 227
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.019 Score=55.11 Aligned_cols=97 Identities=15% Similarity=0.043 Sum_probs=64.8
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC--------CCCCCeeEEEecc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCAR 325 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lp--------f~d~sFDlVvss~ 325 (474)
..+|+|+|+-+|.|+..+++.......|+++|+.+--. -..+.+..+|++.-+ +....+|+|+|-.
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~------~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ 119 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP------IPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDM 119 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc------CCCceEEeeeccCccHHHHHHHHcCCCCcceEEecC
Confidence 47899999999999999988743334588999876211 123556666655433 3444579999742
Q ss_pred c---cccccccH-------HHHHHHHHhhcCCCcEEEEEeC
Q 011964 326 C---GVDWDQKD-------GILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 326 ~---l~~~~~d~-------~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. .-++..|. ..++.-...+|+|||.|++-.+
T Consensus 120 ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 120 APNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred CCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 2 11221221 2456667789999999999876
No 228
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.66 E-value=0.013 Score=58.77 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=60.5
Q ss_pred CCceEEEECCCCchHHHHhhh-cCCceeEEEEecCCHHHHHHHHHc-------CCCcEEEeecccCCCCCCCCeeEEEec
Q 011964 253 GVRTILDIGCGYGSFGAHLFS-KELLTMCIANYEASGSQVQLTLER-------GLPAMIGSFASKQLPYPSLSFDMLHCA 324 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~-~g~~~~~v~giD~s~~~l~~A~er-------g~~~~~~~~d~~~Lpf~d~sFDlVvss 324 (474)
.+.+|+=||+|.=-++..+.. .......++++|++++.++.+++- +....+..+|....+..-..||+|+..
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 346999999997776666543 323356789999999999888642 334667777877666555689999876
Q ss_pred ccccccc-ccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 325 RCGVDWD-QKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 325 ~~l~~~~-~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
.. ..+. .+-..+|..+.+.++||..+++-.
T Consensus 200 al-Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 AL-VGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT--S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hh-cccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 33 2221 244689999999999999999864
No 229
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.65 E-value=0.018 Score=55.81 Aligned_cols=120 Identities=19% Similarity=0.199 Sum_probs=79.0
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHH----HcCCC-cEEEeecccCCCCCCCCeeEEEeccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 328 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~----erg~~-~~~~~~d~~~Lpf~d~sFDlVvss~~l~ 328 (474)
..+++|||.|.|.=+.-|+-. .+...++.+|....-+.+.+ +-+++ +.+....++.+.-....||+|.|-.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv-- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV-- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc--
Confidence 479999999999988887633 13356899999876654443 34666 77888777777533222999998644
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEe
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 389 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~ 389 (474)
.+...++.-....+|+||.+++.-. ......+...+......++....
T Consensus 145 ---a~L~~l~e~~~pllk~~g~~~~~k~----------~~~~~e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 145 ---ASLNVLLELCLPLLKVGGGFLAYKG----------LAGKDELPEAEKAILPLGGQVEK 192 (215)
T ss_pred ---cchHHHHHHHHHhcccCCcchhhhH----------HhhhhhHHHHHHHHHhhcCcEEE
Confidence 3345577778899999998865332 12233444555555555555443
No 230
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.63 E-value=0.0088 Score=59.49 Aligned_cols=102 Identities=13% Similarity=0.092 Sum_probs=72.6
Q ss_pred hhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc---CCCcEEEeec
Q 011964 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFA 307 (474)
Q Consensus 231 ~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er---g~~~~~~~~d 307 (474)
....+.+.+.+....+ ..|||||+|+|.++..|++.+ ..++++|.++.+.+..+++ ..++.+...|
T Consensus 16 ~~~~~~Iv~~~~~~~~--------~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D 84 (262)
T PF00398_consen 16 PNIADKIVDALDLSEG--------DTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVINGD 84 (262)
T ss_dssp HHHHHHHHHHHTCGTT--------SEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-
T ss_pred HHHHHHHHHhcCCCCC--------CEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeecc
Confidence 4456677777765544 789999999999999999885 5899999999999988875 3467788888
Q ss_pred ccCCCCCC---CCeeEEEeccccccccccHHHHHHHHHhhcCC
Q 011964 308 SKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKP 347 (474)
Q Consensus 308 ~~~Lpf~d---~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKP 347 (474)
+..+..++ +....|+++.- ++. ...++..+...-+.
T Consensus 85 ~l~~~~~~~~~~~~~~vv~NlP-y~i---s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 85 FLKWDLYDLLKNQPLLVVGNLP-YNI---SSPILRKLLELYRF 123 (262)
T ss_dssp TTTSCGGGHCSSSEEEEEEEET-GTG---HHHHHHHHHHHGGG
T ss_pred hhccccHHhhcCCceEEEEEec-ccc---hHHHHHHHhhcccc
Confidence 88777554 45667777633 222 23466666654343
No 231
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.53 E-value=0.0005 Score=62.77 Aligned_cols=54 Identities=22% Similarity=0.228 Sum_probs=45.0
Q ss_pred cccCCCCCCCCeeEEEeccccccccccH-HHHHHHHHhhcCCCcEEEEEeCCCCc
Q 011964 307 ASKQLPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNP 360 (474)
Q Consensus 307 d~~~Lpf~d~sFDlVvss~~l~~~~~d~-~~~L~ei~RvLKPGG~lvis~~~~~~ 360 (474)
.....+|.++|.|+|.+.+++.|+.-+. ..++++++|+|||||++-++.|....
T Consensus 37 As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f 91 (185)
T COG4627 37 ASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKF 91 (185)
T ss_pred hhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcch
Confidence 3456789999999999999988875433 38999999999999999999986643
No 232
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.49 E-value=0.022 Score=55.24 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=72.1
Q ss_pred hhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCH----HHHHHHHHcCCCcEEEee
Q 011964 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASG----SQVQLTLERGLPAMIGSF 306 (474)
Q Consensus 231 ~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~----~~l~~A~erg~~~~~~~~ 306 (474)
+.+...++..+..+.. .+.-....+||-+|+.+|....++++--.....|++++.|+ ..+..|++|. ++.-...
T Consensus 52 ~P~RSKLaAai~~Gl~-~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~-NIiPIl~ 129 (229)
T PF01269_consen 52 NPFRSKLAAAILKGLE-NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP-NIIPILE 129 (229)
T ss_dssp -TTT-HHHHHHHTT-S---S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST-TEEEEES
T ss_pred CchhhHHHHHHHcCcc-ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC-ceeeeec
Confidence 4444555555533222 12222347999999999999999987522235799999998 4456676663 3332333
Q ss_pred cccCCC----CCCCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 307 ASKQLP----YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 307 d~~~Lp----f~d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
|+. .| .-=+.+|+|++- + ......+.++.++...||+||.++++-.
T Consensus 130 DAr-~P~~Y~~lv~~VDvI~~D-V--aQp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 130 DAR-HPEKYRMLVEMVDVIFQD-V--AQPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp -TT-SGGGGTTTS--EEEEEEE----SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCC-ChHHhhcccccccEEEec-C--CChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 433 33 112379999976 2 2223345788889999999999999864
No 233
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.40 E-value=0.02 Score=59.63 Aligned_cols=107 Identities=20% Similarity=0.315 Sum_probs=72.7
Q ss_pred CceEEEECCCCchHHHHhhhcCCc-eeEEEEecCCHHHHHHHHHc----CCC-cEEEeecccCCC--CCC-CCeeEEEe-
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP--YPS-LSFDMLHC- 323 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~-~~~v~giD~s~~~l~~A~er----g~~-~~~~~~d~~~Lp--f~d-~sFDlVvs- 323 (474)
..+|||+.++.|.=+.++++..-. ...|+++|.++.-++..+++ |+. +.+...|...++ .+. +.||.|+.
T Consensus 157 ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlD 236 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLD 236 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEEC
Confidence 389999999999999999887322 23469999999777655443 665 355556655554 222 35999985
Q ss_pred ---ccc-ccc------c--cc--------cHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 011964 324 ---ARC-GVD------W--DQ--------KDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (474)
Q Consensus 324 ---s~~-l~~------~--~~--------d~~~~L~ei~RvLKPGG~lvis~~~~~~ 360 (474)
+.. .+. | .. -+..+|....++|||||.|+.++-....
T Consensus 237 aPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 237 APCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred CCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 211 111 1 11 1236899999999999999999976654
No 234
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.023 Score=60.71 Aligned_cols=95 Identities=20% Similarity=0.261 Sum_probs=68.4
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccCCCCC---CCCeeEEEecc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP---SLSFDMLHCAR 325 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~Lpf~---d~sFDlVvss~ 325 (474)
..+|||+=||.|.|+..|+++. ..|+|+|+++++++.|+++ ++ ++.+..++++++.-. ...||+|+.--
T Consensus 294 ~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP 370 (432)
T COG2265 294 GERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP 370 (432)
T ss_pred CCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC
Confidence 3789999999999999999763 6899999999999888765 44 467777887776532 35789998642
Q ss_pred ccccccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 326 ~l~~~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
-.-- -.+.+++.+.+ ++|-.++++|-
T Consensus 371 PR~G---~~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 371 PRAG---ADREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred CCCC---CCHHHHHHHHh-cCCCcEEEEeC
Confidence 1111 11245666555 47777888875
No 235
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.38 E-value=0.021 Score=64.69 Aligned_cols=104 Identities=13% Similarity=-0.014 Sum_probs=68.7
Q ss_pred CceEEEECCCCchHHHHhhhc------CC-----------------------------------ceeEEEEecCCHHHHH
Q 011964 254 VRTILDIGCGYGSFGAHLFSK------EL-----------------------------------LTMCIANYEASGSQVQ 292 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~------g~-----------------------------------~~~~v~giD~s~~~l~ 292 (474)
...++|-.||+|.+....+.. |. ....++|+|+++.+++
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 368999999999998776532 00 1136899999999999
Q ss_pred HHHHc----CCC--cEEEeecccCCCCC--CCCeeEEEeccccc-ccc--ccHHHHHH---HHHhhcCCCcEEEEEeCC
Q 011964 293 LTLER----GLP--AMIGSFASKQLPYP--SLSFDMLHCARCGV-DWD--QKDGILLL---EVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 293 ~A~er----g~~--~~~~~~d~~~Lpf~--d~sFDlVvss~~l~-~~~--~d~~~~L~---ei~RvLKPGG~lvis~~~ 357 (474)
.|+++ |+. +.+...|+.+++.+ .++||+|+++--.- .+. .+...+.. +..+...+|+.+++.++.
T Consensus 271 ~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~~ 349 (702)
T PRK11783 271 AARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSSS 349 (702)
T ss_pred HHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 98876 553 56777788777654 35899999983321 111 11223333 344444589888777653
No 236
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.31 E-value=0.041 Score=55.84 Aligned_cols=135 Identities=17% Similarity=0.206 Sum_probs=82.7
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHH---HHHH----HcC-C---C-----------------cE--
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV---QLTL----ERG-L---P-----------------AM-- 302 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l---~~A~----erg-~---~-----------------~~-- 302 (474)
..-+||==|||.|.++..|+..|+ .+-|-+.|--|+ .++. ..+ . + +.
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~P 226 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIP 226 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCc
Confidence 446799999999999999998875 556778877775 2222 110 0 0 00
Q ss_pred -EEee----cccCCC---------CC----CCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeCCCCc----
Q 011964 303 -IGSF----ASKQLP---------YP----SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP---- 360 (474)
Q Consensus 303 -~~~~----d~~~Lp---------f~----d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~---- 360 (474)
+..+ ....+. ++ .++||+|+..+. +.-..+.-.++..+..+|||||+++=..|....
T Consensus 227 D~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfF-IDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~ 305 (369)
T KOG2798|consen 227 DIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFF-IDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDT 305 (369)
T ss_pred cccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEE-eechHHHHHHHHHHHHhccCCcEEEeccceeeeccCC
Confidence 0000 000000 11 246999987633 333344457899999999999999977764432
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhCceEEeee
Q 011964 361 QAFLRNKENQKRWNFVRDFVENLCWELVSQQ 391 (474)
Q Consensus 361 ~~~~~~~e~~~~w~~~~~la~~l~W~~~~~~ 391 (474)
.+..+...-.-..+++..+++..+|+.+.+.
T Consensus 306 ~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 306 HGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 1111111123346788889999999998865
No 237
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.13 E-value=0.018 Score=54.77 Aligned_cols=99 Identities=14% Similarity=0.127 Sum_probs=65.5
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHH----HcCCCcEEEeecccCCCCCCCCeeEEEecccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~----erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~ 329 (474)
.++|||+|.|+|..+..-+..|. ..++..|+.+...+... .+++.+.+...|. + ..+..||+|+.+.+++.
T Consensus 80 gkrVLd~gagsgLvaIAaa~aGA--~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~--~-g~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 80 GKRVLDLGAGSGLVAIAAARAGA--AEVVAADIDPWLEQAIRLNAAANGVSILFTHADL--I-GSPPAFDLLLAGDLFYN 154 (218)
T ss_pred cceeeecccccChHHHHHHHhhh--HHHHhcCCChHHHHHhhcchhhccceeEEeeccc--c-CCCcceeEEEeeceecC
Confidence 47999999999999988887764 45667787765554433 3455555554432 2 36778999999988666
Q ss_pred ccccHHHHHHHHHhhcC-CCcEEEEEeCCCC
Q 011964 330 WDQKDGILLLEVDRVLK-PGGYFVWTSPLTN 359 (474)
Q Consensus 330 ~~~d~~~~L~ei~RvLK-PGG~lvis~~~~~ 359 (474)
. .....++. +.+.|+ .|-.+++-+|...
T Consensus 155 ~-~~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 155 H-TEADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred c-hHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 5 33345666 555555 4555555666544
No 238
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.05 E-value=0.0021 Score=54.43 Aligned_cols=96 Identities=18% Similarity=0.104 Sum_probs=39.1
Q ss_pred EEECCCCchHHHHhhhcCCce--eEEEEecCCH---HHHHHHHHcCC--CcEEEeecccCC--CCCCCCeeEEEeccccc
Q 011964 258 LDIGCGYGSFGAHLFSKELLT--MCIANYEASG---SQVQLTLERGL--PAMIGSFASKQL--PYPSLSFDMLHCARCGV 328 (474)
Q Consensus 258 LDIGCGtG~~~~~La~~g~~~--~~v~giD~s~---~~l~~A~erg~--~~~~~~~d~~~L--pf~d~sFDlVvss~~l~ 328 (474)
||||+..|..+..+++.--.. ..++++|..+ ...+..++.+. .+.+..++..+. .+++++||+|+.-.. +
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-H 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-C
Confidence 699999999998887641111 3688999988 34444443333 355555554322 133578999997632 3
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
.. ......+..+.+.|+|||++++-+
T Consensus 80 ~~-~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 SY-EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -H-HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CH-HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 22 444578899999999999999854
No 239
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.98 E-value=0.016 Score=52.08 Aligned_cols=96 Identities=18% Similarity=0.123 Sum_probs=58.2
Q ss_pred CCceEEEECCCCchHHHHhhh-----cCCceeEEEEecCCHHHHHHHHHcCC--C------cEEEeecccCCCCCCCCee
Q 011964 253 GVRTILDIGCGYGSFGAHLFS-----KELLTMCIANYEASGSQVQLTLERGL--P------AMIGSFASKQLPYPSLSFD 319 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~-----~g~~~~~v~giD~s~~~l~~A~erg~--~------~~~~~~d~~~Lpf~d~sFD 319 (474)
...+|+|+|||.|.++..|+. . ....|+++|.++..++.+.++.- . ..+...+....+ .....+
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 357899999999999999988 4 34789999999999887765521 1 111222111111 144566
Q ss_pred EEEeccccccccccH-HHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 320 MLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 320 lVvss~~l~~~~~d~-~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
+++.-++ + .+. ..+|+...+ |+-.+++..|.-
T Consensus 102 ~~vgLHa-C---G~Ls~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 102 ILVGLHA-C---GDLSDRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred EEEEeec-c---cchHHHHHHHHHH---cCCCEEEEcCCc
Confidence 6664422 1 222 345555544 666666666544
No 240
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=95.97 E-value=0.097 Score=50.40 Aligned_cols=116 Identities=13% Similarity=0.081 Sum_probs=75.0
Q ss_pred EEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCC-eeEEEecccccc
Q 011964 257 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLS-FDMLHCARCGVD 329 (474)
Q Consensus 257 VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~Lpf~d~s-FDlVvss~~l~~ 329 (474)
|.||||--|.+..+|.+++. ...++++|+++..++.|++. ++ .+.+..+|... +++.+. .|+|+...+.-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGG- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-H-
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCH-
Confidence 68999999999999999974 56789999999999988765 43 24445555322 244433 78888765421
Q ss_pred ccccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEeee
Q 011964 330 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 391 (474)
Q Consensus 330 ~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~~~ 391 (474)
.-....|.+....++..-.|++.-. .....++.++...+|.++.+.
T Consensus 78 --~lI~~ILe~~~~~~~~~~~lILqP~--------------~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 78 --ELIIEILEAGPEKLSSAKRLILQPN--------------THAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp --HHHHHHHHHTGGGGTT--EEEEEES--------------S-HHHHHHHHHHTTEEEEEEE
T ss_pred --HHHHHHHHhhHHHhccCCeEEEeCC--------------CChHHHHHHHHHCCCEEEEeE
Confidence 1224577777777777667777543 124567888999999988764
No 241
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.86 E-value=0.077 Score=50.54 Aligned_cols=135 Identities=16% Similarity=0.076 Sum_probs=73.7
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCH----------HHHHHHHHcCC-CcEEEeecccCCC-------CCCC
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASG----------SQVQLTLERGL-PAMIGSFASKQLP-------YPSL 316 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~----------~~l~~A~erg~-~~~~~~~d~~~Lp-------f~d~ 316 (474)
.+|+|+=.|.|.|+..++..-.....|+++-..+ .+-..+++... +..........++ .+..
T Consensus 50 ~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~~~~~ 129 (238)
T COG4798 50 ATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDLVPTA 129 (238)
T ss_pred CEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccccccc
Confidence 8999999999999999876521222344433322 22222222211 1111111112222 2233
Q ss_pred CeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhH--HHHHHHHHHHHHHHhhCceEEeee
Q 011964 317 SFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK--ENQKRWNFVRDFVENLCWELVSQQ 391 (474)
Q Consensus 317 sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~--e~~~~w~~~~~la~~l~W~~~~~~ 391 (474)
++|+++.... +| .....++..++++.|||||.+++.+|....--...+. .+...-..+..-.++.+|.+..+.
T Consensus 130 ~~yhdmh~k~-i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~aeS 204 (238)
T COG4798 130 QNYHDMHNKN-IH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAES 204 (238)
T ss_pred hhhhhhhccc-cC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeeee
Confidence 4444443322 22 2445689999999999999999999876542111111 112222455666778888877653
No 242
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.85 E-value=0.021 Score=53.99 Aligned_cols=94 Identities=15% Similarity=0.172 Sum_probs=69.3
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----C-CCcEEEeecccCCCCCCCCeeEEEecccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g-~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~ 329 (474)
..+.|+|+|+|.++...++. +..+++++.++.....|.++ | .++.++.+|+....| ...|+|+|...---
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTa 108 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTA 108 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHH
Confidence 57999999999998777665 36789999999988888887 2 356678888877777 45899998632111
Q ss_pred c-cccHHHHHHHHHhhcCCCcEEEE
Q 011964 330 W-DQKDGILLLEVDRVLKPGGYFVW 353 (474)
Q Consensus 330 ~-~~d~~~~L~ei~RvLKPGG~lvi 353 (474)
. .+..-.+++.+...||-.+.++=
T Consensus 109 Li~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 109 LIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hhcccccHHHHHHHHHhhcCCcccc
Confidence 1 12233677777778888888774
No 243
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.71 E-value=0.015 Score=54.03 Aligned_cols=66 Identities=17% Similarity=0.150 Sum_probs=45.0
Q ss_pred eEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCC--CCCCC-eeEEEec
Q 011964 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLS-FDMLHCA 324 (474)
Q Consensus 256 ~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~Lp--f~d~s-FDlVvss 324 (474)
.|+|+.||.|..+..+++.. ..|+++|+++..++.|+.+ |+ ++.+..+|..++. +.... ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 69999999999999999983 5799999999999988865 54 4667777755542 22222 8999975
No 244
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.65 E-value=0.088 Score=55.35 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=34.4
Q ss_pred CCCCCCCeeEEEecccccccccc--------------------------------------HHHHHHHHHhhcCCCcEEE
Q 011964 311 LPYPSLSFDMLHCARCGVDWDQK--------------------------------------DGILLLEVDRVLKPGGYFV 352 (474)
Q Consensus 311 Lpf~d~sFDlVvss~~l~~~~~d--------------------------------------~~~~L~ei~RvLKPGG~lv 352 (474)
--||++|.+++|++.+ +||... -..+|+-=.+-|.|||.++
T Consensus 156 RLfP~~Slh~~~Ss~s-lHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mv 234 (386)
T PLN02668 156 RLFPARSIDVFHSAFS-LHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMF 234 (386)
T ss_pred cccCCCceEEEEeecc-ceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEE
Confidence 3489999999999988 677421 0123444455689999999
Q ss_pred EEeCCCC
Q 011964 353 WTSPLTN 359 (474)
Q Consensus 353 is~~~~~ 359 (474)
++..+..
T Consensus 235 l~~~Gr~ 241 (386)
T PLN02668 235 LVCLGRT 241 (386)
T ss_pred EEEecCC
Confidence 9987764
No 245
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.58 E-value=0.023 Score=57.38 Aligned_cols=105 Identities=20% Similarity=0.248 Sum_probs=70.7
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCCcE-EEeecccCC-C-CCCCCeeEEEe---
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAM-IGSFASKQL-P-YPSLSFDMLHC--- 323 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~~-~~~~d~~~L-p-f~d~sFDlVvs--- 323 (474)
..+|||+.++.|.=+.++++.-.....+++.|++..-+...+++ |+... +...|.... + .....||.|+.
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaP 165 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDAP 165 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEECS
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcCCC
Confidence 37899999999999999887733346899999999877655443 55443 343555444 1 23346999995
Q ss_pred -ccc-cccccc----------------cHHHHHHHHHhhc----CCCcEEEEEeCCC
Q 011964 324 -ARC-GVDWDQ----------------KDGILLLEVDRVL----KPGGYFVWTSPLT 358 (474)
Q Consensus 324 -s~~-l~~~~~----------------d~~~~L~ei~RvL----KPGG~lvis~~~~ 358 (474)
+.. .+.-.+ -+.++|....+.+ ||||+++.++-..
T Consensus 166 CSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 166 CSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp CCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred ccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 221 011111 1236799999999 9999999998643
No 246
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.45 E-value=0.12 Score=51.65 Aligned_cols=106 Identities=9% Similarity=0.081 Sum_probs=57.9
Q ss_pred CCceEEEECCCC--chHHHHhhhcCCceeEEEEecCCHHHHHHHHHc---CCC--cEEEeecccCCC----------C-C
Q 011964 253 GVRTILDIGCGY--GSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLP--AMIGSFASKQLP----------Y-P 314 (474)
Q Consensus 253 ~~~~VLDIGCGt--G~~~~~La~~g~~~~~v~giD~s~~~l~~A~er---g~~--~~~~~~d~~~Lp----------f-~ 314 (474)
+.+..||||||- -.+...+++.-.+...|+-+|+.+-.+..++.. ... ..++.+|..+.. + .
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 468999999994 346666766544557888899999888755543 223 456667654421 1 1
Q ss_pred -CCCeeEEEecccccccc--ccHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 315 -SLSFDMLHCARCGVDWD--QKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 315 -d~sFDlVvss~~l~~~~--~d~~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
+..+ .|+...++++.. +++..++..+...|.||.+|+++.....
T Consensus 148 ~~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 148 FDRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp TTS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 1222 233344434443 3456899999999999999999987543
No 247
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=95.44 E-value=0.16 Score=53.08 Aligned_cols=130 Identities=14% Similarity=0.115 Sum_probs=84.0
Q ss_pred ccccccchhhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCc-------------------------
Q 011964 223 ASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELL------------------------- 277 (474)
Q Consensus 223 ~~~~yd~~~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~------------------------- 277 (474)
+-..+++.+..-..++..+-...+ +. ....++|-=||+|.+....+-.+..
T Consensus 165 GyR~~~g~ApLketLAaAil~lag--w~--~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~ 240 (381)
T COG0116 165 GYRVYDGPAPLKETLAAAILLLAG--WK--PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKL 240 (381)
T ss_pred cccccCCCCCchHHHHHHHHHHcC--CC--CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHH
Confidence 334445545555555554432222 11 1157999999999999877655310
Q ss_pred ------ee-------EEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCCCCCeeEEEecccc-cccccc--H-
Q 011964 278 ------TM-------CIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG-VDWDQK--D- 334 (474)
Q Consensus 278 ------~~-------~v~giD~s~~~l~~A~er----g~~--~~~~~~d~~~Lpf~d~sFDlVvss~~l-~~~~~d--~- 334 (474)
.. .++|.|+++.+++.|+.+ |+. +.+.++|+..++-+-+.+|+|+|+--. .-+... .
T Consensus 241 ~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~ 320 (381)
T COG0116 241 REEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVA 320 (381)
T ss_pred HHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHH
Confidence 01 377999999999988765 554 678888988886544789999998320 111111 1
Q ss_pred ---HHHHHHHHhhcCCCcEEEEEeC
Q 011964 335 ---GILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 335 ---~~~L~ei~RvLKPGG~lvis~~ 356 (474)
..+...+.+.++--+.++|++.
T Consensus 321 ~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 321 KLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEcc
Confidence 2455677788888889999875
No 248
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.36 E-value=0.045 Score=56.95 Aligned_cols=53 Identities=23% Similarity=0.298 Sum_probs=38.5
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEeecccC
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ 310 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~~d~~~ 310 (474)
..|||+=||.|.++..|++.. ..|+|+|.++++++.|+++ ++ ++.+..+++++
T Consensus 198 ~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred CcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 379999999999999999873 5899999999999888754 44 45666555443
No 249
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.36 E-value=0.15 Score=52.60 Aligned_cols=107 Identities=17% Similarity=0.077 Sum_probs=61.4
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHH--HcCC-----CcEEEeecccCCCCC-CCCeeEEEec
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL--ERGL-----PAMIGSFASKQLPYP-SLSFDMLHCA 324 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~--erg~-----~~~~~~~d~~~Lpf~-d~sFDlVvss 324 (474)
.+.+|||+|.|+|.-...+..--..-.+++.++.|+..-+... +.++ +..-......+++++ ...|++|+..
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhh
Confidence 4567999999999766555433111233445666665443322 1111 111112223345544 2367877766
Q ss_pred ccccccccc--HHHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 325 RCGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 325 ~~l~~~~~d--~~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
.-+.+.... ....+..+..++.|||.|+|.+++..
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp 229 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP 229 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence 554444221 12478888899999999999998754
No 250
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=95.13 E-value=0.033 Score=49.39 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=34.6
Q ss_pred eEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc
Q 011964 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297 (474)
Q Consensus 256 ~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er 297 (474)
+|||||||.|.++..+++.+. ...++++|+++.+.+.++++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHH
Confidence 489999999999999988753 34899999999999877654
No 251
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=94.59 E-value=0.18 Score=52.26 Aligned_cols=104 Identities=15% Similarity=0.070 Sum_probs=70.4
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----C--------CCcEEEeecccCC-CCCCCCee
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--------LPAMIGSFASKQL-PYPSLSFD 319 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g--------~~~~~~~~d~~~L-pf~d~sFD 319 (474)
+.++||-+|.|.|..++.+.+.- ....|+-+|.++.|++.++.. . ..+.+...|+.+. .-..+.||
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP-~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYP-QVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCC-CcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 35789999999999999998872 257899999999999998743 1 1233333333222 22345899
Q ss_pred EEEecccccccccc-----HHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 320 MLHCARCGVDWDQK-----DGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 320 lVvss~~l~~~~~d-----~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
.|+.-.- -.-.+. -..+..-+.|.|+++|.+++..-.+
T Consensus 368 ~vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 368 VVIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred EEEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 9986421 110010 1257778889999999999976544
No 252
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.49 E-value=0.11 Score=49.83 Aligned_cols=40 Identities=28% Similarity=0.404 Sum_probs=30.8
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHH
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL 295 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~ 295 (474)
-.+.|||||.|.+...|+.. ++..-|.|.++-...-+..+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~-fPdtLiLGmEIR~KVsdYVk 101 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPK-FPDTLILGMEIRDKVSDYVK 101 (249)
T ss_pred ceEEeeccCccchhhhcccc-CccceeeeehhhHHHHHHHH
Confidence 35899999999999999987 45667889888655544433
No 253
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=94.28 E-value=0.0024 Score=54.59 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=42.9
Q ss_pred ccccceechhhhhhHHHhhhhhccCCCCcCcccccccCCCCccCcCCchhhhhcccccchhhhcCCCCCC
Q 011964 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQEL 163 (474)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~~~~~y~pC~d~~~~~~~~~~~~~~~~r~c~~~~ 163 (474)
.-||||.|++.|+.++..|+.+..-|. +++++.. |++......+..++.+++++.+...+
T Consensus 32 ~~~g~R~Y~~~~l~~l~~I~~l~~~G~---~l~ei~~-------~l~~~~~~~~l~~~~~~l~~~i~~l~ 91 (102)
T cd04789 32 NANGYRLYPDSDLQRLLLIQQLQAGGL---SLKECLA-------CLQGKLTRSLLLERLSSLAEQIARKQ 91 (102)
T ss_pred CCCCCeeCCHHHHHHHHHHHHHHHCCC---CHHHHHH-------HHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 349999999999999999999998888 7777776 43333333444555666666655533
No 254
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.16 E-value=0.2 Score=52.73 Aligned_cols=110 Identities=21% Similarity=0.311 Sum_probs=73.7
Q ss_pred cccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHH----HcCCCcE-EEeecccCCC---CCCCCeeEE
Q 011964 250 ILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLPAM-IGSFASKQLP---YPSLSFDML 321 (474)
Q Consensus 250 ~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~----erg~~~~-~~~~d~~~Lp---f~d~sFDlV 321 (474)
.+....+|||+.+-+|.=+.+++..-.....|++.|.+..-+.... +.|+... +...|...+| |+. +||-|
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 3446689999999999877777654222356889998877665443 3466543 4556666555 555 89999
Q ss_pred E----eccccccc-----------------cccHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 011964 322 H----CARCGVDW-----------------DQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (474)
Q Consensus 322 v----ss~~l~~~-----------------~~d~~~~L~ei~RvLKPGG~lvis~~~~~~ 360 (474)
. |+...... ..-+.++|.....++++||+|+.++-....
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 8 34311111 011346888899999999999999876543
No 255
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=93.91 E-value=0.073 Score=57.23 Aligned_cols=69 Identities=26% Similarity=0.343 Sum_probs=51.2
Q ss_pred hhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC-CcEEEe
Q 011964 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGS 305 (474)
Q Consensus 231 ~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~-~~~~~~ 305 (474)
+.++..+.+.+.+..+ ..+||+-||||.++..+++. +..|+|++++++.+..|+.+ |+ +..|++
T Consensus 369 evLys~i~e~~~l~~~--------k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~ 437 (534)
T KOG2187|consen 369 EVLYSTIGEWAGLPAD--------KTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISNATFIV 437 (534)
T ss_pred HHHHHHHHHHhCCCCC--------cEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccceeeee
Confidence 4455566666655544 78999999999999999876 36899999999999888765 33 456666
Q ss_pred ecccC
Q 011964 306 FASKQ 310 (474)
Q Consensus 306 ~d~~~ 310 (474)
+.+++
T Consensus 438 gqaE~ 442 (534)
T KOG2187|consen 438 GQAED 442 (534)
T ss_pred cchhh
Confidence 64444
No 256
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=93.76 E-value=0.36 Score=47.77 Aligned_cols=127 Identities=17% Similarity=0.217 Sum_probs=70.3
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEEEeecccCCCCCCCCeeEEEecccccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~ 329 (474)
+.+|+|||||.=-++....... ....++++|++..++++...- +++..+...|...- .+....|+++..-+ ++
T Consensus 106 p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~-~~~~~~DlaLllK~-lp 182 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSD-PPKEPADLALLLKT-LP 182 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTS-HTTSEESEEEEET--HH
T ss_pred CchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeecc-CCCCCcchhhHHHH-HH
Confidence 5899999999999998877552 346899999999999876543 55666665554433 24457999987655 33
Q ss_pred ccccH--HHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHH-HHHHHHHHHHhhCceE
Q 011964 330 WDQKD--GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQK-RWNFVRDFVENLCWEL 387 (474)
Q Consensus 330 ~~~d~--~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~-~w~~~~~la~~l~W~~ 387 (474)
..+.. ...+.-+..+ + .=.++++.|...-.+ ++..... .-..++.++...+|..
T Consensus 183 ~le~q~~g~g~~ll~~~-~-~~~~vVSfPtrSL~g--R~~gm~~~y~~~fe~~~~~~~~~~ 239 (251)
T PF07091_consen 183 CLERQRRGAGLELLDAL-R-SPHVVVSFPTRSLGG--RNKGMEQTYSAWFEALAAERGWIV 239 (251)
T ss_dssp HHHHHSTTHHHHHHHHS-C-ESEEEEEEES---------TTHHHCHHHHHHHHCCTTCEEE
T ss_pred HHHHHhcchHHHHHHHh-C-CCeEEEecccccccc--CccccccCHHHHHHHhcccCCcee
Confidence 32222 1223333333 2 235666666543222 1121111 1234677777778773
No 257
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=93.63 E-value=0.38 Score=43.57 Aligned_cols=98 Identities=19% Similarity=0.173 Sum_probs=59.1
Q ss_pred EEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCC--CCCCCeeEEEecccccccc-----ccH---HHHHHHHHh
Q 011964 280 CIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLSFDMLHCARCGVDWD-----QKD---GILLLEVDR 343 (474)
Q Consensus 280 ~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~Lp--f~d~sFDlVvss~~l~~~~-----~d~---~~~L~ei~R 343 (474)
.|+++|+-+++++..+++ +. ++.+...+=+.+. .+.+.+|+|+.+...+.-. ..+ -.+++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 478999999999888766 33 3555544434443 2335899999886544331 112 278999999
Q ss_pred hcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhC
Q 011964 344 VLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLC 384 (474)
Q Consensus 344 vLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~ 384 (474)
+|+|||.+.+....-.. ....+.+.+..+++.+.
T Consensus 81 lL~~gG~i~iv~Y~GH~-------gG~eE~~av~~~~~~L~ 114 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHP-------GGKEESEAVEEFLASLD 114 (140)
T ss_dssp HEEEEEEEEEEE--STC-------HHHHHHHHHHHHHHTS-
T ss_pred hhccCCEEEEEEeCCCC-------CCHHHHHHHHHHHHhCC
Confidence 99999999998765443 23345566677766654
No 258
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=93.18 E-value=0.0046 Score=52.80 Aligned_cols=59 Identities=20% Similarity=0.178 Sum_probs=41.1
Q ss_pred cccccceechhhhhhHHHhhhhhccCCCCcCcccccccCCCCccCcCCchhhhhcccccchhhhcCCCC
Q 011964 93 HIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQ 161 (474)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~~~~~y~pC~d~~~~~~~~~~~~~~~~r~c~~ 161 (474)
...||||.|+++|+.++..|..+..-|. +++++.. |.+.........++.+.+++.+..
T Consensus 31 r~~~g~R~Y~~~dl~~l~~I~~l~~~G~---~l~ei~~-------~~~~~~~~~~l~~~~~~l~~~i~~ 89 (102)
T cd04775 31 RSEANYRLYSEADLSRLEKIVFLQAGGL---PLEEIAG-------CLAQPHVQAILEERLQSLNREIQR 89 (102)
T ss_pred CCCCCCeeeCHHHHHHHHHHHHHHHCCC---CHHHHHH-------HHcCCcHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999999988888 7777776 433322333344455555555544
No 259
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.08 E-value=0.21 Score=51.60 Aligned_cols=94 Identities=17% Similarity=0.135 Sum_probs=66.6
Q ss_pred ceEEEECCC-CchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d 333 (474)
.+|+=+|+| .|..+..+++.- ..+|+++|.+++-.+.|++-|....+...+.....--.+.||+|+.+-.
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~------- 238 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG------- 238 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-------
Confidence 667777766 556777777741 2689999999999999999886655543222222211224999986521
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 334 DGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 334 ~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
...+....+.||+||.+++.....
T Consensus 239 -~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 239 -PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred -hhhHHHHHHHHhcCCEEEEECCCC
Confidence 447888899999999999988663
No 260
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.75 E-value=2.9 Score=40.36 Aligned_cols=132 Identities=16% Similarity=0.139 Sum_probs=77.8
Q ss_pred cCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHH----HHHHHcC-CCcEEEeecccCCC----CCCCCeeEEE
Q 011964 252 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV----QLTLERG-LPAMIGSFASKQLP----YPSLSFDMLH 322 (474)
Q Consensus 252 ~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l----~~A~erg-~~~~~~~~d~~~Lp----f~d~sFDlVv 322 (474)
....+||=+|+-+|....++++-- ....++++++|+.+. ..|.+|. +-..+. |+ +.| +-=+..|+|+
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv-~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~--DA-~~P~~Y~~~Ve~VDviy 150 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIV-GEGRIYAVEFSPRPMRELLDVAEKRPNIIPILE--DA-RKPEKYRHLVEKVDVIY 150 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhcc-CCCcEEEEEecchhHHHHHHHHHhCCCceeeec--cc-CCcHHhhhhcccccEEE
Confidence 345899999999999999988752 234689999997554 5566552 222222 32 233 1123589888
Q ss_pred eccccccccccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEeeecc
Q 011964 323 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDE 393 (474)
Q Consensus 323 ss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~~~~~ 393 (474)
.--+ -....+.+..++...||+||+++++--...-+. ..+....+.+-.+-++..+|+.+.+-..
T Consensus 151 ~DVA---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdv---T~dp~~vf~~ev~kL~~~~f~i~e~~~L 215 (231)
T COG1889 151 QDVA---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDV---TADPEEVFKDEVEKLEEGGFEILEVVDL 215 (231)
T ss_pred EecC---CchHHHHHHHHHHHhcccCCeEEEEEEeecccc---cCCHHHHHHHHHHHHHhcCceeeEEecc
Confidence 6521 112235677889999999998888754332111 1122233433333445556776665443
No 261
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=92.28 E-value=0.029 Score=52.47 Aligned_cols=60 Identities=15% Similarity=0.052 Sum_probs=44.0
Q ss_pred ccccceechhhhhhHHHhhhhhccCCCCcCcccccccCCCCccCcCCch--hhhhcccccchhhhcCCCCCC
Q 011964 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNES--RNLALGYSNGDEVDRHCGQEL 163 (474)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~~~~~y~pC~d~~--~~~~~~~~~~~~~~r~c~~~~ 163 (474)
..||||.|+++|+.+|..|+.++..|. +++++.. +++.. ....++.++++.+++++....
T Consensus 33 ~~~gyR~Y~~~dl~rL~~I~~lr~~G~---sL~eI~~-------ll~~~~~~~~~~L~~~~~~l~~ei~~L~ 94 (172)
T cd04790 33 SESNYRLYGERDLERLEQICAYRSAGV---SLEDIRS-------LLQQPGDDATDVLRRRLAELNREIQRLR 94 (172)
T ss_pred CCCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHHH-------HHhcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999999999999 7888887 33321 122344556666677777644
No 262
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=92.19 E-value=0.47 Score=49.06 Aligned_cols=107 Identities=18% Similarity=0.134 Sum_probs=55.3
Q ss_pred CCceEEEECCCCchHHHHhhhc---------------CCceeEEEEecCCH-HHHHHHH----H----cCCCcEEE---e
Q 011964 253 GVRTILDIGCGYGSFGAHLFSK---------------ELLTMCIANYEASG-SQVQLTL----E----RGLPAMIG---S 305 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~---------------g~~~~~v~giD~s~-~~l~~A~----e----rg~~~~~~---~ 305 (474)
+.-+|+|+||..|.++..+... ..+...+.-.|.-. ..-...+ . ...+..+. .
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp 95 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP 95 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence 4568999999999999877543 11234566556532 1111111 0 01122232 2
Q ss_pred ecccCCCCCCCCeeEEEeccccccccc-------c------------------H--------------HHHHHHHHhhcC
Q 011964 306 FASKQLPYPSLSFDMLHCARCGVDWDQ-------K------------------D--------------GILLLEVDRVLK 346 (474)
Q Consensus 306 ~d~~~Lpf~d~sFDlVvss~~l~~~~~-------d------------------~--------------~~~L~ei~RvLK 346 (474)
++...--||++|.|+++++.+ +||.. + + ..+|+-=.+-|+
T Consensus 96 gSFy~rLfP~~Svh~~~Ss~a-lHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv 174 (334)
T PF03492_consen 96 GSFYGRLFPSNSVHFGHSSYA-LHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELV 174 (334)
T ss_dssp S-TTS--S-TT-EEEEEEES--TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred chhhhccCCCCceEEEEEech-hhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheec
Confidence 344444489999999999877 66621 1 0 023444455689
Q ss_pred CCcEEEEEeCCCCc
Q 011964 347 PGGYFVWTSPLTNP 360 (474)
Q Consensus 347 PGG~lvis~~~~~~ 360 (474)
|||.++++-++...
T Consensus 175 ~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 175 PGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEE-ST
T ss_pred cCcEEEEEEeeccc
Confidence 99999999876654
No 263
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=91.93 E-value=1.1 Score=44.53 Aligned_cols=103 Identities=13% Similarity=0.136 Sum_probs=61.6
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHH--HHHHH--------cCCCcEEEeeccc---CCCCCCCC-ee
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV--QLTLE--------RGLPAMIGSFASK---QLPYPSLS-FD 319 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l--~~A~e--------rg~~~~~~~~d~~---~Lpf~d~s-FD 319 (474)
..+|||+|.|+|..+...+.... ..+...|...... +.... .|..+.+..++=. ...+-... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLG--AEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhc--ceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 46799999999988877776422 3455555544332 22211 1223333222211 11111122 99
Q ss_pred EEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 320 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 320 lVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
+|+++.|+++- ...+.++.-+.-.|-.+|.+++..+-..
T Consensus 165 lilasDvvy~~-~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 165 LILASDVVYEE-ESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEEEeeeeecC-CcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 99999996654 5556788889999999997777776443
No 264
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=91.91 E-value=0.82 Score=46.54 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=51.4
Q ss_pred cchhhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc-----CCC--
Q 011964 228 DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLP-- 300 (474)
Q Consensus 228 d~~~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er-----g~~-- 300 (474)
.....|+..+.+++...... ....-++||||+|....-..|..+- ...+++|.|+++..++.|++. ++.
T Consensus 80 P~R~nYi~~i~DlL~~~~~~---~~~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~ 155 (299)
T PF05971_consen 80 PNRLNYIHWIADLLASSNPG---IPEKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESR 155 (299)
T ss_dssp HHHHHHHHHHHHHHT--TCG---CS---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTT
T ss_pred chhHHHHHHHHHHhhccccc---cccceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccc
Confidence 34568889999988754331 1114689999999886655555442 357999999999999998764 232
Q ss_pred cEEEeec-ccC----CCCCCCCeeEEEeccccc
Q 011964 301 AMIGSFA-SKQ----LPYPSLSFDMLHCARCGV 328 (474)
Q Consensus 301 ~~~~~~d-~~~----Lpf~d~sFDlVvss~~l~ 328 (474)
+.+.... ... +--++..||+.+|+--++
T Consensus 156 I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy 188 (299)
T PF05971_consen 156 IELRKQKNPDNIFDGIIQPNERFDFTMCNPPFY 188 (299)
T ss_dssp EEEEE--ST-SSTTTSTT--S-EEEEEE-----
T ss_pred eEEEEcCCccccchhhhcccceeeEEecCCccc
Confidence 3332221 111 122346899999986544
No 265
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=90.92 E-value=0.56 Score=50.82 Aligned_cols=101 Identities=16% Similarity=0.144 Sum_probs=73.5
Q ss_pred CceEEEECCCCchHHHHhhhc---CCceeEEEEecCCHHHHHHHHHc-----CCCcEEEeecccCCCCCCCCeeEEEecc
Q 011964 254 VRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLER-----GLPAMIGSFASKQLPYPSLSFDMLHCAR 325 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~---g~~~~~v~giD~s~~~l~~A~er-----g~~~~~~~~d~~~Lpf~d~sFDlVvss~ 325 (474)
...|+=+|+|.|-+.....+. -...+++++++-++.++-..+.+ .-.+.++..|+..++-|....|++++..
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence 456888999999887665432 22457899999999887655444 2356778889999886668899999864
Q ss_pred ccccccccH--HHHHHHHHhhcCCCcEEEEEe
Q 011964 326 CGVDWDQKD--GILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 326 ~l~~~~~d~--~~~L~ei~RvLKPGG~lvis~ 355 (474)
. -.+.++. ..-|.-+-+.|||.|+.+=..
T Consensus 448 L-GSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 448 L-GSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred h-ccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 3 4443332 468999999999999887443
No 266
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=90.64 E-value=0.036 Score=46.78 Aligned_cols=33 Identities=18% Similarity=0.042 Sum_probs=28.7
Q ss_pred cccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
.||||.|+++|+.++..|..|..-|. ++++...
T Consensus 33 ~~gyR~Y~~~~~~~l~~I~~lr~~G~---~l~eI~~ 65 (97)
T cd04782 33 ENGYRYYTLEQFEQLDIILLLKELGI---SLKEIKD 65 (97)
T ss_pred CCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 49999999999999999999998888 6666554
No 267
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=90.18 E-value=1.7 Score=45.35 Aligned_cols=100 Identities=16% Similarity=0.068 Sum_probs=64.5
Q ss_pred ceEEEECCCC-chHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccC-----C-CC-CCCCeeEEEeccc
Q 011964 255 RTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-----L-PY-PSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGCGt-G~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~-----L-pf-~d~sFDlVvss~~ 326 (474)
.+||.+|||. |..+..+++... ...+++++.+++.++.+++.+. ..+......+ + .+ ....+|+|+-.-.
T Consensus 186 ~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg 263 (386)
T cd08283 186 DTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHLG-AETINFEEVDDVVEALRELTGGRGPDVCIDAVG 263 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcCC-cEEEcCCcchHHHHHHHHHcCCCCCCEEEECCC
Confidence 6899999987 888888877621 1358889999999999988731 2222111111 1 12 2336999886421
Q ss_pred cc--------------cccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 327 GV--------------DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 327 l~--------------~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
.. +-..+....+.++.+.|+|+|.+++...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 264 MEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 00 0012335688999999999999998764
No 268
>PRK13699 putative methylase; Provisional
Probab=90.10 E-value=0.97 Score=44.12 Aligned_cols=74 Identities=19% Similarity=0.108 Sum_probs=43.2
Q ss_pred CCCCCCeeEEEeccccc----c-----cc-c----cHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHH
Q 011964 312 PYPSLSFDMLHCARCGV----D-----WD-Q----KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVR 377 (474)
Q Consensus 312 pf~d~sFDlVvss~~l~----~-----~~-~----d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~ 377 (474)
.++++++|+|++.--.. . +. . -....+.|++|+|||||.+++.... .. ...+.
T Consensus 15 ~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~-~~------------~~~~~ 81 (227)
T PRK13699 15 RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW-NR------------VDRFM 81 (227)
T ss_pred hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc-cc------------HHHHH
Confidence 47788899998762100 0 00 0 0136889999999999998864321 00 11123
Q ss_pred HHHHhhCceEEeeecceeEEeecCC
Q 011964 378 DFVENLCWELVSQQDETVVWKKTSK 402 (474)
Q Consensus 378 ~la~~l~W~~~~~~~~~~iw~k~~~ 402 (474)
...++.+|... ...||.|...
T Consensus 82 ~al~~~GF~l~----~~IiW~K~~~ 102 (227)
T PRK13699 82 AAWKNAGFSVV----GHLVFTKNYT 102 (227)
T ss_pred HHHHHCCCEEe----eEEEEECCCC
Confidence 34456677643 3468888753
No 269
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=90.06 E-value=0.34 Score=46.65 Aligned_cols=103 Identities=10% Similarity=-0.043 Sum_probs=52.9
Q ss_pred CCceEEEECCCCchHHHHhhhc---CCceeEEEEecCCHHHHH-HHHHc---CCCcEEEeecccCCC-------C-CCCC
Q 011964 253 GVRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQ-LTLER---GLPAMIGSFASKQLP-------Y-PSLS 317 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~---g~~~~~v~giD~s~~~l~-~A~er---g~~~~~~~~d~~~Lp-------f-~d~s 317 (474)
++++|+|+|.=.|..+..+++. -.....|.++|+.-.... .+.+. ...+.+..++..+.. . ....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 3479999999988877766543 113468999999543322 22222 235667777654432 1 1123
Q ss_pred eeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 318 FDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 318 FDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
-.+|+-- + .|...+.-..|+....++++|+|+++.+..
T Consensus 112 ~vlVilD-s-~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 112 PVLVILD-S-SHTHEHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp SEEEEES-S-----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred ceEEEEC-C-CccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence 3455432 3 344466677888899999999999997753
No 270
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=90.04 E-value=2.5 Score=46.11 Aligned_cols=119 Identities=22% Similarity=0.235 Sum_probs=75.4
Q ss_pred hhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhc---CCceeEEEEecCCHHHHHHHHHc----CCC--c
Q 011964 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLER----GLP--A 301 (474)
Q Consensus 231 ~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~---g~~~~~v~giD~s~~~l~~A~er----g~~--~ 301 (474)
....+.+++++...+. .+|.|-.||+|.+.....+. ......++|.|.+......|+.+ ++. +
T Consensus 172 ~~v~~liv~~l~~~~~--------~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~ 243 (489)
T COG0286 172 REVSELIVELLDPEPR--------NSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDA 243 (489)
T ss_pred HHHHHHHHHHcCCCCC--------CeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccc
Confidence 3445556666554332 58999999999987665543 11126799999999999888765 444 2
Q ss_pred EEEeecccCCCC-----CCCCeeEEEecccc--ccccc----------------------cHHHHHHHHHhhcCCCcEEE
Q 011964 302 MIGSFASKQLPY-----PSLSFDMLHCARCG--VDWDQ----------------------KDGILLLEVDRVLKPGGYFV 352 (474)
Q Consensus 302 ~~~~~d~~~Lpf-----~d~sFDlVvss~~l--~~~~~----------------------d~~~~L~ei~RvLKPGG~lv 352 (474)
.+..++...-|. ..+.||.|+++--+ -.|.. ....++..+...|+|||+..
T Consensus 244 ~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aa 323 (489)
T COG0286 244 NIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAA 323 (489)
T ss_pred cccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEE
Confidence 344444333332 33679999986221 11110 11367899999999999777
Q ss_pred EEeCC
Q 011964 353 WTSPL 357 (474)
Q Consensus 353 is~~~ 357 (474)
+..+.
T Consensus 324 ivl~~ 328 (489)
T COG0286 324 IVLPD 328 (489)
T ss_pred EEecC
Confidence 66553
No 271
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=89.99 E-value=0.039 Score=46.50 Aligned_cols=34 Identities=15% Similarity=0.001 Sum_probs=30.0
Q ss_pred ccccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
..||||.|++.|+.++..|+.+..-|. ++++...
T Consensus 32 ~~~gyR~Y~~~~l~~l~~I~~lr~~G~---~l~eI~~ 65 (96)
T cd04788 32 TEGGHRLYDRADIRRLHQIIALRRLGF---SLREIGR 65 (96)
T ss_pred CCCCceeeCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 358999999999999999999998888 7777765
No 272
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=89.95 E-value=1.3 Score=45.28 Aligned_cols=84 Identities=10% Similarity=0.082 Sum_probs=56.9
Q ss_pred hhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC----CCcEEEeec
Q 011964 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFA 307 (474)
Q Consensus 232 ~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg----~~~~~~~~d 307 (474)
-..+++.+.+...++ ..++|.=+|.|..+..+++.- ....++++|.++.+++.++++- -.+.+...+
T Consensus 7 Vll~Evl~~L~~~~g--------giyVD~TlG~GGHS~~iL~~l-~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~n 77 (305)
T TIGR00006 7 VLLDEVVEGLNIKPD--------GIYIDCTLGFGGHSKAILEQL-GTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDN 77 (305)
T ss_pred hhHHHHHHhcCcCCC--------CEEEEeCCCChHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCC
Confidence 344555555554443 689999999999999999863 2368999999999999987652 134455444
Q ss_pred ccCCC-----CCCCCeeEEEec
Q 011964 308 SKQLP-----YPSLSFDMLHCA 324 (474)
Q Consensus 308 ~~~Lp-----f~d~sFDlVvss 324 (474)
...+. ...+++|.|+..
T Consensus 78 F~~l~~~l~~~~~~~vDgIl~D 99 (305)
T TIGR00006 78 FANFFEHLDELLVTKIDGILVD 99 (305)
T ss_pred HHHHHHHHHhcCCCcccEEEEe
Confidence 33332 233568888763
No 273
>PHA01634 hypothetical protein
Probab=89.52 E-value=2.1 Score=38.33 Aligned_cols=69 Identities=16% Similarity=0.034 Sum_probs=47.4
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEE-e-ecccCCCCCCCCeeEEEe
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIG-S-FASKQLPYPSLSFDMLHC 323 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~-~-~d~~~Lpf~d~sFDlVvs 323 (474)
..++|+|||++-|..+.+++-+|. ..|+++++++...+..++.-....+. . ....+.+-.-+.||+.+.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEE
Confidence 347999999999999999998875 68999999999998887742111111 0 111233433346887764
No 274
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=89.52 E-value=1 Score=45.69 Aligned_cols=101 Identities=13% Similarity=0.040 Sum_probs=70.6
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc---------CCCcEEEeecccCC--CCCCCCeeEE
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQL--PYPSLSFDML 321 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er---------g~~~~~~~~d~~~L--pf~d~sFDlV 321 (474)
.++.||=||-|.|.+.+..+.+ -....+.-+|+....++..++. +..+.+..+|...+ ....+.||+|
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 4688999999999999988877 3456778888888777766543 23344544453332 2457899999
Q ss_pred Eecccccccccc----HHHHHHHHHhhcCCCcEEEEEe
Q 011964 322 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 322 vss~~l~~~~~d----~~~~L~ei~RvLKPGG~lvis~ 355 (474)
+.-.. -...+. .+.++..+.+.||+||+++...
T Consensus 200 i~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 200 ITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 97532 222121 2367888999999999999876
No 275
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.45 E-value=7.3 Score=37.98 Aligned_cols=117 Identities=15% Similarity=0.102 Sum_probs=75.7
Q ss_pred eEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCCCCC-CCCeeEEEeccccc
Q 011964 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYP-SLSFDMLHCARCGV 328 (474)
Q Consensus 256 ~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~--~~~~~~d~~~Lpf~-d~sFDlVvss~~l~ 328 (474)
++.||||--|.+..+|.+.+. ...+++.|+++..++.|.+. +.. +.+..+|. -.++. +..+|+|+...+.-
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-LAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred ceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-ccccCccCCcCEEEEeCCcH
Confidence 499999999999999999864 56788899999888888654 332 22333343 22343 34799988764421
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEeee
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 391 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~~~ 391 (474)
.-....|.+-..-|+.==+|++. |+.+. ..+++++....|++..+.
T Consensus 97 ---~lI~~ILee~~~~l~~~~rlILQ-Pn~~~-------------~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 97 ---TLIREILEEGKEKLKGVERLILQ-PNIHT-------------YELREWLSANSYEIKAET 142 (226)
T ss_pred ---HHHHHHHHHhhhhhcCcceEEEC-CCCCH-------------HHHHHHHHhCCceeeeee
Confidence 11235667766666644345442 32221 246777888999988764
No 276
>TIGR02054 MerD mercuric resistence transcriptional repressor protein MerD. This model represents a transcriptional repressor protein of the MerR family (pfam00376) whose expression is regulated by the mercury-sensitive transcriptional activator, MerR. MerD has been shown to repress the transcription of the mer operon.
Probab=89.42 E-value=0.2 Score=44.15 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=29.6
Q ss_pred ccccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
..||||.|++.++.+|..|..+...|. ++++...
T Consensus 35 ~~~gyR~Y~~~~l~rL~~I~~lr~~G~---~L~eI~~ 68 (120)
T TIGR02054 35 TTSGYGIFDDASLQRLRFVRAAFEAGI---GLGELAR 68 (120)
T ss_pred CCCCCeeCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 349999999999999999999999999 6666654
No 277
>PRK13749 transcriptional regulator MerD; Provisional
Probab=89.09 E-value=0.18 Score=44.55 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=29.1
Q ss_pred cccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
.||||.|+++++.+|..|..+..-|. +++++..
T Consensus 36 ~~gyR~Y~~~~l~rL~~I~~~r~~G~---sL~eI~~ 68 (121)
T PRK13749 36 TGGYGLFDDAALQRLCFVRAAFEAGI---GLDALAR 68 (121)
T ss_pred CCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 49999999999999999999877788 7777775
No 278
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=89.07 E-value=3.6 Score=38.22 Aligned_cols=121 Identities=18% Similarity=0.184 Sum_probs=73.1
Q ss_pred EECCCCchHHHHhhhcCCceeEE--EEecCCHHHHH----------HHHHcCCCcEEEeecccCCC----CCCCCeeEEE
Q 011964 259 DIGCGYGSFGAHLFSKELLTMCI--ANYEASGSQVQ----------LTLERGLPAMIGSFASKQLP----YPSLSFDMLH 322 (474)
Q Consensus 259 DIGCGtG~~~~~La~~g~~~~~v--~giD~s~~~l~----------~A~erg~~~~~~~~d~~~Lp----f~d~sFDlVv 322 (474)
=||=|.=+|+..|++.......+ +..|..++..+ ..++.|+.+.+ ..|+..+. ...+.||.|+
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~-~VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLH-GVDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCcccc-CCCCCcccccccccCCcCCEEE
Confidence 36777778888888762213334 34555543332 22334554443 34666664 3568899999
Q ss_pred eccccccc-----ccc-------HHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEee
Q 011964 323 CARCGVDW-----DQK-------DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 390 (474)
Q Consensus 323 ss~~l~~~-----~~d-------~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~~ 390 (474)
-++--... ..+ ...+++.+.++|+++|.+.++-....+ ...| .++.+++..++.+...
T Consensus 81 FNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---------y~~W-~i~~lA~~~gl~l~~~ 150 (166)
T PF10354_consen 81 FNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---------YDSW-NIEELAAEAGLVLVRK 150 (166)
T ss_pred EeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---------Cccc-cHHHHHHhcCCEEEEE
Confidence 87541110 001 126788999999999999998753322 2457 4567888877776553
No 279
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=88.89 E-value=2.4 Score=42.36 Aligned_cols=92 Identities=18% Similarity=0.246 Sum_probs=60.9
Q ss_pred ceEEEECCC-CchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----CCCCCCeeEEEeccccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARCGV 328 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L-----pf~d~sFDlVvss~~l~ 328 (474)
.+||..|+| .|..+..+++.. ...++.++.++...+.+++.+....+..-+ ... ....+.+|+|+....
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~D~vid~~g-- 241 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKELGADEVLNSLD-DSPKDKKAAGLGGGFDVIFDFVG-- 241 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhCCCEEEcCCC-cCHHHHHHHhcCCCceEEEECCC--
Confidence 678888876 467777777652 245788899999998887777543322111 000 123457998885421
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
....+.++.+.|+++|.++....
T Consensus 242 -----~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 242 -----TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred -----CHHHHHHHHHHhhcCCEEEEECC
Confidence 13478889999999999998754
No 280
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=88.62 E-value=0.3 Score=45.28 Aligned_cols=45 Identities=22% Similarity=0.292 Sum_probs=34.5
Q ss_pred CCCeeEEEecccccccc-------ccH---HHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 315 SLSFDMLHCARCGVDWD-------QKD---GILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 315 d~sFDlVvss~~l~~~~-------~d~---~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
.++||.+.|..++.|.. -|+ ..++.++.++|||||.|+++.|.-.
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 35799998876655541 111 3789999999999999999998764
No 281
>COG0789 SoxR Predicted transcriptional regulators [Transcription]
Probab=88.15 E-value=0.23 Score=43.20 Aligned_cols=32 Identities=22% Similarity=0.081 Sum_probs=28.3
Q ss_pred ccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 96 HGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 96 ~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
||||.|+++|++++..|..+..=|. +++++..
T Consensus 34 ~gyR~Ys~~dl~~l~~I~~~r~~G~---~L~~I~~ 65 (124)
T COG0789 34 GGYRYYTPEDLELLQIIKTLRELGF---SLAEIKE 65 (124)
T ss_pred CCceecCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 9999999999999999999986567 7888876
No 282
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=87.74 E-value=0.24 Score=44.18 Aligned_cols=35 Identities=26% Similarity=0.115 Sum_probs=30.5
Q ss_pred cccccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 93 HIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
...||||.|++.++.++..|+.++.-|. ++++...
T Consensus 31 ~~~~gyR~Y~~~~~~~l~~I~~lr~~G~---sL~eI~~ 65 (133)
T cd04787 31 DPVNGYRLYSEKDLSRLRFILSARQLGF---SLKDIKE 65 (133)
T ss_pred CCCCCeeeCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 3459999999999999999999999999 7777665
No 283
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=87.35 E-value=2.9 Score=44.02 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=76.0
Q ss_pred ccccccchhhhHHHHHHHHhccccccccc--cCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc---
Q 011964 223 ASLIFDGVEDYSHQIAEMIGLRNESNFIL--AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--- 297 (474)
Q Consensus 223 ~~~~yd~~~~~~~~l~~~l~~~~g~~l~~--~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er--- 297 (474)
...+|+-...+.+.+.-.+-. ....+.. ...-+|||.=+|+|.=+..++..-.....|+..|++++.++..+++
T Consensus 18 ~~vFYNP~~~~nRDlsvl~~~-~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~ 96 (377)
T PF02005_consen 18 APVFYNPVMEFNRDLSVLAIR-YLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLEL 96 (377)
T ss_dssp SSSS--GGGHHHHHHHHHH----HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHH
T ss_pred CCcccCcchhcccceeehhHH-HHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhh
Confidence 444556666666655544410 0000000 1235899999999999988887622346899999999999887765
Q ss_pred -CCCc---EEEeecccCCC-CCCCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 298 -GLPA---MIGSFASKQLP-YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 298 -g~~~---~~~~~d~~~Lp-f~d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
++.. .+...|+..+- .....||+|=.- .+ ..+..+|....+.+|.||++.++..
T Consensus 97 N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD----Pf-GSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 97 NGLEDERIEVSNMDANVLLYSRQERFDVIDLD----PF-GSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp CT-SGCCEEEEES-HHHHHCHSTT-EEEEEE------S-S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred ccccCceEEEehhhHHHHhhhccccCCEEEeC----CC-CCccHhHHHHHHHhhcCCEEEEecc
Confidence 4443 45555554442 246689999743 22 3345699999999999999999864
No 284
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=87.02 E-value=1.9 Score=43.29 Aligned_cols=123 Identities=15% Similarity=0.173 Sum_probs=73.6
Q ss_pred eEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCC--CCCeeEEEecccccc-c--
Q 011964 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP--SLSFDMLHCARCGVD-W-- 330 (474)
Q Consensus 256 ~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~--d~sFDlVvss~~l~~-~-- 330 (474)
+|+|+-||.|.++..+.+.|+ ..+.++|+++..++..+.+.... +...|+..+... ...+|+++.+.- +. +
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~--~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpP-Cq~fS~ 77 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGF--EIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFP-CQPFSI 77 (275)
T ss_pred cEEEEccCcchHHHHHHHcCC--EEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCC-ChhhhH
Confidence 589999999999999988875 46788999999988777664322 344455555422 346999997632 11 1
Q ss_pred ------cccH-HHHHHHHHh---hcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEE
Q 011964 331 ------DQKD-GILLLEVDR---VLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 388 (474)
Q Consensus 331 ------~~d~-~~~L~ei~R---vLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~ 388 (474)
..+. ..++.++.| .++|- +++.+-+..-.. ......+..+....+.+++...
T Consensus 78 ag~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~g~~~----~~~~~~~~~i~~~l~~~GY~~~ 139 (275)
T cd00315 78 AGKRKGFEDTRGTLFFEIIRILKEKKPK--YFLLENVKGLLT----HDNGNTLKVILNTLEELGYNVY 139 (275)
T ss_pred HhhcCCCCCchHHHHHHHHHHHHhcCCC--EEEEEcCcchhc----cCchHHHHHHHHHHHhCCcEEE
Confidence 1122 234444444 44565 555555443211 1112345566666677777643
No 285
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=86.98 E-value=0.29 Score=42.12 Aligned_cols=35 Identities=11% Similarity=0.063 Sum_probs=29.1
Q ss_pred cccccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 93 HIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
..-||||.|++.|+.++..|..+...|. ++++...
T Consensus 31 r~~~g~R~Y~~~~l~~l~~I~~lr~~G~---~l~~I~~ 65 (107)
T cd01111 31 RTEGGYGLFDDCALQRLRFVRAAFEAGI---GLDELAR 65 (107)
T ss_pred cCCCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 3459999999999999999999988788 5666553
No 286
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=86.98 E-value=0.16 Score=45.38 Aligned_cols=33 Identities=21% Similarity=0.152 Sum_probs=29.1
Q ss_pred cccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
-||||.|++.|+.++..|..++.-|. ++++...
T Consensus 33 ~~gyR~Y~~~~v~~l~~I~~lr~~Gf---sL~eI~~ 65 (131)
T cd04786 33 ANGYRDYPPETVWVLEIISSAQQAGF---SLDEIRQ 65 (131)
T ss_pred CCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 59999999999999999999988888 6776665
No 287
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=86.83 E-value=3.2 Score=42.38 Aligned_cols=94 Identities=14% Similarity=0.087 Sum_probs=58.8
Q ss_pred CceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEee--cccCCCCCCCCeeEEEecccccc
Q 011964 254 VRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSF--ASKQLPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 254 ~~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~--d~~~Lpf~d~sFDlVvss~~l~~ 329 (474)
..+||=+||| .|.++..+++. |. ..++++|.+++.++.+++.|....+... +...+.-..+.||+|+-.-.
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G--- 244 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGA--AEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG--- 244 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--cEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC---
Confidence 3678888875 34444555554 32 3578889999999999987754333111 11111111235898885421
Q ss_pred ccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 330 WDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 330 ~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. ...+....+.|++||.+++...
T Consensus 245 ---~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ---H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ---C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 2467888899999999998764
No 288
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=86.75 E-value=1.3 Score=47.15 Aligned_cols=67 Identities=21% Similarity=0.188 Sum_probs=48.8
Q ss_pred ccchhhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc
Q 011964 227 FDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297 (474)
Q Consensus 227 yd~~~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er 297 (474)
+++...|..-+...+..... ....+...|||||.|||.++...+..|. ..+++++.-..|.+.|++-
T Consensus 42 ~dRNiky~~gi~~tIte~kh--~~~~gkv~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI 108 (636)
T KOG1501|consen 42 SDRNIKYRLGIEKTITEPKH--VLDIGKVFVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKI 108 (636)
T ss_pred ccccHHHHHHHHHHhcccce--eccCceEEEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHH
Confidence 35556777777777664433 1112335799999999999988888763 6799999999999988753
No 289
>cd04768 HTH_BmrR-like Helix-Turn-Helix DNA binding domain of BmrR-like transcription regulators. Helix-turn-helix (HTH) BmrR-like transcription regulators (TipAL, Mta, SkgA, BmrR, and BltR), N-terminal domain. These proteins have been shown to regulate expression of specific regulons in response to various toxic substances, antibiotics, or oxygen radicals in Bacillus subtilis, Streptomyces, and Caulobacter crescentus. They are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=86.72 E-value=0.32 Score=40.96 Aligned_cols=33 Identities=21% Similarity=0.013 Sum_probs=28.9
Q ss_pred cccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
.||||.|+++|+.++..|+.|..-|. ++++-..
T Consensus 33 ~~gyR~Y~~~~l~~l~~I~~lr~~G~---~l~~I~~ 65 (96)
T cd04768 33 ENGYRYYSYAQLYQLQFILFLRELGF---SLAEIKE 65 (96)
T ss_pred CCCeeeCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 58999999999999999999999888 6666554
No 290
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=86.70 E-value=0.35 Score=41.93 Aligned_cols=42 Identities=14% Similarity=0.398 Sum_probs=27.5
Q ss_pred CeeEEEeccccc--ccc-ccH--HHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 317 SFDMLHCARCGV--DWD-QKD--GILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 317 sFDlVvss~~l~--~~~-~d~--~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
.||+|.|..+.- |.. .|. ..+++.+++.|+|||+|++.--++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w 47 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPW 47 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---H
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCc
Confidence 489999975521 221 222 379999999999999999965443
No 291
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=86.32 E-value=0.34 Score=42.81 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=28.7
Q ss_pred cccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
-||||.|+++|+.++..|..+..-|. ++++...
T Consensus 33 ~~gyR~Y~~~~l~~l~~I~~lr~~G~---sL~eI~~ 65 (127)
T cd04784 33 ANNYRLYDEEHLERLLFIRRCRSLDM---SLDEIRT 65 (127)
T ss_pred CCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 49999999999999999999988888 6666664
No 292
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=85.83 E-value=18 Score=35.82 Aligned_cols=124 Identities=17% Similarity=0.152 Sum_probs=62.9
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHH----HHHcCCCcEEEeecccCCCCC---CCCeeEEEeccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL----TLERGLPAMIGSFASKQLPYP---SLSFDMLHCARC 326 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~----A~erg~~~~~~~~d~~~Lpf~---d~sFDlVvss~~ 326 (474)
.++||=||=..-.. ..++-.+ ....|+.+|+.+..+++ |.+.++++.....|.. .|+| -++||++++--.
T Consensus 45 gk~il~lGDDDLtS-lA~al~~-~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR-~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 45 GKRILFLGDDDLTS-LALALTG-LPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLR-DPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp T-EEEEES-TT-HH-HHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TT-S---TTTSS-BSEEEE---
T ss_pred CCEEEEEcCCcHHH-HHHHhhC-CCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEeccc-ccCCHHHhcCCCEEEeCCC
Confidence 47899999655433 2332222 23688999999999854 5566888777776643 3454 378999997632
Q ss_pred cccccccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEe
Q 011964 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 389 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~ 389 (474)
+.. .-..-++..-...||.-|-..+....... .....|..++.....+++-...
T Consensus 122 -yT~-~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~-------~s~~~~~~~Q~~l~~~gl~i~d 175 (243)
T PF01861_consen 122 -YTP-EGLKLFLSRGIEALKGEGCAGYFGFTHKE-------ASPDKWLEVQRFLLEMGLVITD 175 (243)
T ss_dssp -SSH-HHHHHHHHHHHHTB-STT-EEEEEE-TTT---------HHHHHHHHHHHHTS--EEEE
T ss_pred -CCH-HHHHHHHHHHHHHhCCCCceEEEEEecCc-------CcHHHHHHHHHHHHHCCcCHHH
Confidence 221 22346788888889876633333322111 1246788899888888865543
No 293
>KOG2730 consensus Methylase [General function prediction only]
Probab=85.75 E-value=0.93 Score=44.16 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=51.2
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCC--cEEEeecccCC----CCCCCCeeEEEe
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQL----PYPSLSFDMLHC 323 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~--~~~~~~d~~~L----pf~d~sFDlVvs 323 (474)
...|+|.-||.|..+..++.++ ..|+++|+++.-+..|+.+ |++ +.+.++|..++ .+....+|+|+.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 3579999999999999998886 4688999999999988876 554 55677775443 344445677776
Q ss_pred c
Q 011964 324 A 324 (474)
Q Consensus 324 s 324 (474)
+
T Consensus 172 s 172 (263)
T KOG2730|consen 172 S 172 (263)
T ss_pred C
Confidence 5
No 294
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=85.67 E-value=0.2 Score=44.21 Aligned_cols=34 Identities=29% Similarity=0.177 Sum_probs=29.2
Q ss_pred ccccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
.-||||.|++.++.++..|..+..-|. ++++-..
T Consensus 31 ~~~g~R~Y~~~~l~~l~~I~~l~~~G~---sl~eI~~ 64 (124)
T TIGR02051 31 PEGGYRRYPEETVKRLRFIKRAQELGF---SLEEIGG 64 (124)
T ss_pred CCCCCEeECHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 458999999999999999999988888 6666554
No 295
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=85.65 E-value=0.22 Score=42.81 Aligned_cols=33 Identities=24% Similarity=0.142 Sum_probs=28.9
Q ss_pred cccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
.||||.|+++++.++..|..+..-|. ++++...
T Consensus 34 ~ngyR~Y~~~~i~~l~~I~~lr~~G~---sl~~i~~ 66 (108)
T cd01107 34 DTGYRYYSAEQLERLNRIKYLRDLGF---PLEEIKE 66 (108)
T ss_pred CCCccccCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 58999999999999999999998888 6666665
No 296
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=85.25 E-value=0.4 Score=41.50 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=29.7
Q ss_pred cccccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 93 HIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
...||||.|++.|+.+|..|..|..-|. ++++...
T Consensus 30 r~~~g~R~Y~~~~~~~l~~I~~lr~~G~---sl~eI~~ 64 (112)
T cd01282 30 RSANGYRDYDEAAVDRVRQIRRLLAAGL---TLEEIRE 64 (112)
T ss_pred cCCCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 3469999999999999999999998888 6666554
No 297
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=85.24 E-value=0.41 Score=42.38 Aligned_cols=34 Identities=24% Similarity=0.155 Sum_probs=28.4
Q ss_pred ccccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
..||||.|+++|+.+|..|..|+.-|. ++++-..
T Consensus 32 ~~~g~R~Y~~~~~~~l~~I~~lr~~G~---sL~eI~~ 65 (127)
T cd01108 32 SDNGYRVYNQRDIEELRFIRRARDLGF---SLEEIRE 65 (127)
T ss_pred CCCCceecCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 359999999999999999999988888 5555443
No 298
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=85.14 E-value=0.39 Score=48.22 Aligned_cols=100 Identities=17% Similarity=0.270 Sum_probs=56.6
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHH------------HcCCCcEEEeeccc---CCCC-CCC
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL------------ERGLPAMIGSFASK---QLPY-PSL 316 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~------------erg~~~~~~~~d~~---~Lpf-~d~ 316 (474)
...+|||+|||.|.-.......+. ..+...|.+.+.++.-. +..-.-.+...... +.-+ ..+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc--ceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 357999999999999888877753 45666777766552110 00000000000000 1111 112
Q ss_pred --CeeEEEeccccccccccHHHH-HHHHHhhcCCCcEEEEEe
Q 011964 317 --SFDMLHCARCGVDWDQKDGIL-LLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 317 --sFDlVvss~~l~~~~~d~~~~-L~ei~RvLKPGG~lvis~ 355 (474)
.||+|.++...+.. ...+.. .......+++.|.+++..
T Consensus 194 ~~~ydlIlsSetiy~~-~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSI-DSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ccchhhhhhhhhhhCc-chhhhhHhhhhhhcCCccchhhhhh
Confidence 68888888776655 333333 566677888888887743
No 299
>cd01105 HTH_GlnR-like Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=85.14 E-value=0.42 Score=39.57 Aligned_cols=32 Identities=25% Similarity=0.136 Sum_probs=28.2
Q ss_pred ccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 96 HGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 96 ~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
||||+|++.|+..+..|..|...|. ++++...
T Consensus 35 ~g~R~Ys~~dv~~l~~I~~Lr~~G~---sl~~i~~ 66 (88)
T cd01105 35 GGQRKYSLADVDRLLVIKELLDEGF---TLAAAVE 66 (88)
T ss_pred CCceecCHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 7999999999999999999999888 6666554
No 300
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=85.12 E-value=21 Score=37.49 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=61.8
Q ss_pred ceEEEECCCCchHHH----Hhhhc--CCceeEEEEecC----CHHHH--------HHHHHcCCCcEEEee---cccCC--
Q 011964 255 RTILDIGCGYGSFGA----HLFSK--ELLTMCIANYEA----SGSQV--------QLTLERGLPAMIGSF---ASKQL-- 311 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~----~La~~--g~~~~~v~giD~----s~~~l--------~~A~erg~~~~~~~~---d~~~L-- 311 (474)
-+|+|+|.|.|.--. .|+.+ +.+...||+++. +...+ ++|+..|++..|... ..+.+
T Consensus 112 vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~ 191 (374)
T PF03514_consen 112 VHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDP 191 (374)
T ss_pred eEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCH
Confidence 589999999997443 44443 566789999999 55554 455555888777653 22222
Q ss_pred ---CCCCCCeeEEEeccccccccc------cHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 312 ---PYPSLSFDMLHCARCGVDWDQ------KDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 312 ---pf~d~sFDlVvss~~l~~~~~------d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
...++.+=+|-|.+.++++.. ++...+-...|-|+|.-.+ +++...
T Consensus 192 ~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv-~~E~ea 246 (374)
T PF03514_consen 192 SMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVV-LVEQEA 246 (374)
T ss_pred HHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEE-EEeecC
Confidence 233344444445555555531 2334566777789999544 444433
No 301
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=85.01 E-value=0.53 Score=41.65 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=28.1
Q ss_pred ccccceechhhhhhHHHhhhhhccCCCCcCcccccc
Q 011964 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCS 129 (474)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~ 129 (474)
.-||||.|+++++.++..|+.++.-|. ++++=.
T Consensus 32 ~~~gyR~Y~~~~l~~l~~I~~lr~~G~---sL~eI~ 64 (127)
T TIGR02044 32 SEGGYRTYTQQHLDELRLISRARQVGF---SLEECK 64 (127)
T ss_pred CCCCCeecCHHHHHHHHHHHHHHHCCC---CHHHHH
Confidence 459999999999999999999988888 555544
No 302
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.79 E-value=1.1 Score=43.97 Aligned_cols=96 Identities=21% Similarity=0.164 Sum_probs=59.3
Q ss_pred CceEEEECCCCchHHHHhhhcCCc--------eeEEEEecCCHHHHHHHHHcCC-CcEEEeecccCCC--------CCCC
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELL--------TMCIANYEASGSQVQLTLERGL-PAMIGSFASKQLP--------YPSL 316 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~--------~~~v~giD~s~~~l~~A~erg~-~~~~~~~d~~~Lp--------f~d~ 316 (474)
..+|+|+.+-+|+|+..|.++-+. ...|+++|+.+ |. .+ .+...++|+.... |...
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-Ma------PI~GV~qlq~DIT~~stae~Ii~hfgge 114 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MA------PIEGVIQLQGDITSASTAEAIIEHFGGE 114 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CC------ccCceEEeecccCCHhHHHHHHHHhCCC
Confidence 578999999999999999876211 11277788754 11 11 1223444544322 5556
Q ss_pred CeeEEEeccc-----cccccccH-----HHHHHHHHhhcCCCcEEEEEeC
Q 011964 317 SFDMLHCARC-----GVDWDQKD-----GILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 317 sFDlVvss~~-----l~~~~~d~-----~~~L~ei~RvLKPGG~lvis~~ 356 (474)
..|+|+|-.+ +|.+.+.. -.+|.-...||||||.|+---+
T Consensus 115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 8999999633 22221111 1467777899999999986443
No 303
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=84.78 E-value=0.42 Score=42.40 Aligned_cols=33 Identities=18% Similarity=0.010 Sum_probs=28.3
Q ss_pred cccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
-||||.|++.++.++..|..+..-|. ++++-..
T Consensus 33 ~~gyR~Y~~~~l~~l~~I~~lr~lG~---sL~eI~~ 65 (127)
T TIGR02047 33 DNNYRVYTVGHVERLAFIRNCRTLDM---SLAEIRQ 65 (127)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 48999999999999999999988888 6666554
No 304
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=84.77 E-value=0.77 Score=39.75 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=24.3
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecC
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEA 286 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~ 286 (474)
.....+|||||+|.+..-|.+.|+.. .|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G---~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPG---WGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCc---ccccc
Confidence 34579999999999999998887643 45564
No 305
>PRK11524 putative methyltransferase; Provisional
Probab=84.69 E-value=0.97 Score=45.46 Aligned_cols=53 Identities=23% Similarity=0.136 Sum_probs=33.8
Q ss_pred EEeecccCC--CCCCCCeeEEEeccccc---c-------cc-----ccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 303 IGSFASKQL--PYPSLSFDMLHCARCGV---D-------WD-----QKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 303 ~~~~d~~~L--pf~d~sFDlVvss~~l~---~-------~~-----~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
+..+|.... .+++++||+|++.--.. . +. .-....+.++.|+|||||.+++..
T Consensus 11 i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 11 IIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred EEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 444454442 36678999999852210 0 00 001368899999999999999863
No 306
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.65 E-value=2.3 Score=41.78 Aligned_cols=100 Identities=19% Similarity=0.201 Sum_probs=62.2
Q ss_pred ccchhhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc-----CCC-
Q 011964 227 FDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLP- 300 (474)
Q Consensus 227 yd~~~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er-----g~~- 300 (474)
..+.++|++.+++++....+ .+. .+..++||||.|.--.-..+--+- -..+++|.|+++..++.|+.. ++.
T Consensus 54 vPgRAdYih~laDLL~s~~g-~~~-~~~i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl~sA~~ii~~N~~l~~ 130 (292)
T COG3129 54 VPGRADYIHHLADLLASTSG-QIP-GKNIRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSLSSAKAIISANPGLER 130 (292)
T ss_pred CCChhHHHHHHHHHHHhcCC-CCC-cCceEEEeeccCccccccccccee-ecceeecCccCHHHHHHHHHHHHcCcchhh
Confidence 36779999999999986655 222 345689999988655444443331 236899999999988887643 121
Q ss_pred -cEEE-eecccC----CCCCCCCeeEEEecccccc
Q 011964 301 -AMIG-SFASKQ----LPYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 301 -~~~~-~~d~~~----Lpf~d~sFDlVvss~~l~~ 329 (474)
+++. .-+... +--.++.||++.|+--++.
T Consensus 131 ~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 131 AIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred heeEEeccCccccccccccccceeeeEecCCCcch
Confidence 1111 111111 1122568999999966443
No 307
>cd01110 HTH_SoxR Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.
Probab=84.52 E-value=0.46 Score=42.84 Aligned_cols=34 Identities=12% Similarity=-0.057 Sum_probs=28.7
Q ss_pred cccccceechhhhhhHHHhhhhhccCCCCcCcccccc
Q 011964 93 HIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCS 129 (474)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~ 129 (474)
...||||+|+++|+.++..|..|+..|. ++++-.
T Consensus 31 r~~~g~R~Y~~~dl~~l~~I~~lr~~G~---sl~eI~ 64 (139)
T cd01110 31 RNAGNQRRYPRDVLRRIAFIKVAQRLGL---SLAEIA 64 (139)
T ss_pred cCCCCCeEECHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 3468999999999999999999998888 555544
No 308
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=84.35 E-value=3.4 Score=40.85 Aligned_cols=98 Identities=18% Similarity=0.185 Sum_probs=62.0
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCH----HHHHHHHHcCCCcEEEeecccCCCC----CCCCeeEEEeccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASG----SQVQLTLERGLPAMIGSFASKQLPY----PSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~----~~l~~A~erg~~~~~~~~d~~~Lpf----~d~sFDlVvss~~ 326 (474)
.+||=+|+++|..-.+..+---+.-.|++++.|. ..+..|++|- ++.-+.-|+ +.|. .-.-.|+|++- +
T Consensus 158 sKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRt-NiiPIiEDA-rhP~KYRmlVgmVDvIFaD-v 234 (317)
T KOG1596|consen 158 SKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRT-NIIPIIEDA-RHPAKYRMLVGMVDVIFAD-V 234 (317)
T ss_pred ceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccC-CceeeeccC-CCchheeeeeeeEEEEecc-C
Confidence 6899999999998888876522345678888874 4556676653 222121232 2332 12357777754 2
Q ss_pred cccccccH-HHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 327 GVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 327 l~~~~~d~-~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
.- +++ ..+..+..-.||+||.|+++-...
T Consensus 235 --aq-pdq~RivaLNA~~FLk~gGhfvisikan 264 (317)
T KOG1596|consen 235 --AQ-PDQARIVALNAQYFLKNGGHFVISIKAN 264 (317)
T ss_pred --CC-chhhhhhhhhhhhhhccCCeEEEEEecc
Confidence 12 333 456668888999999999987543
No 309
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=84.23 E-value=0.55 Score=42.19 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=24.7
Q ss_pred cccccceechhhhhhHHHhhhhhccCCC
Q 011964 93 HIYHGYRRLQEQLVSDLWDIGEISLGSS 120 (474)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~~~~g~~ 120 (474)
...||||.|+++|+.+|..|+.++.-|.
T Consensus 31 r~~~gyR~Y~~~~l~~l~~I~~lr~~G~ 58 (135)
T PRK10227 31 RSENGYRTYTQQHLNELTLLRQARQVGF 58 (135)
T ss_pred cCCCCcccCCHHHHHHHHHHHHHHHCCC
Confidence 3469999999999999999999877677
No 310
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=83.93 E-value=2 Score=37.04 Aligned_cols=86 Identities=20% Similarity=0.223 Sum_probs=60.4
Q ss_pred CCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----C-CCCCCeeEEEeccccccccccHHH
Q 011964 263 GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----P-YPSLSFDMLHCARCGVDWDQKDGI 336 (474)
Q Consensus 263 GtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L-----p-f~d~sFDlVvss~~l~~~~~d~~~ 336 (474)
|.|.++..+++... ..++++|.++.-++.+++.|....+.. +..++ . ...+.+|+|+-.-. ...
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~~~~~~-~~~~~~~~i~~~~~~~~~d~vid~~g-------~~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGADHVIDY-SDDDFVEQIRELTGGRGVDVVIDCVG-------SGD 70 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTESEEEET-TTSSHHHHHHHHTTTSSEEEEEESSS-------SHH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhcccccccc-cccccccccccccccccceEEEEecC-------cHH
Confidence 45788888887733 688999999999999999884333321 11111 1 33357999984311 145
Q ss_pred HHHHHHhhcCCCcEEEEEeCCC
Q 011964 337 LLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 337 ~L~ei~RvLKPGG~lvis~~~~ 358 (474)
.+.+...+|+|||.+++.....
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHhccCCEEEEEEccC
Confidence 8999999999999999988655
No 311
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=83.88 E-value=0.5 Score=42.95 Aligned_cols=34 Identities=21% Similarity=0.111 Sum_probs=29.9
Q ss_pred ccccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
.-||||.|++.++.+|..|..++.-|. ++++...
T Consensus 39 ~~~gyR~Y~~~~l~rl~~I~~lr~~G~---sL~eI~~ 72 (144)
T PRK13752 39 PYGSIRRYGEADVTRVRFVKSAQRLGF---SLDEIAE 72 (144)
T ss_pred CCCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 459999999999999999999998888 7777664
No 312
>cd04763 HTH_MlrA-like Helix-Turn-Helix DNA binding domain of MlrA-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A) and related proteins, N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA-like proteins in this group appear to lack the long dimerization helix seen
Probab=83.84 E-value=0.45 Score=37.10 Aligned_cols=34 Identities=9% Similarity=0.061 Sum_probs=28.6
Q ss_pred cccccceechhhhhhHHHhhhhhccCCCCcCcccccc
Q 011964 93 HIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCS 129 (474)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~ 129 (474)
..-||||.|++.|+.++..|..|+..|. +++++.
T Consensus 31 r~~~g~R~yt~~di~~l~~i~~l~~~g~---~l~~i~ 64 (68)
T cd04763 31 RSDGGHRLFNDADIDRILEIKRWIDNGV---QVSKVK 64 (68)
T ss_pred cCCCCCcccCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 3458999999999999999999988887 666654
No 313
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=83.50 E-value=16 Score=38.33 Aligned_cols=107 Identities=19% Similarity=0.264 Sum_probs=65.0
Q ss_pred CceEEEECCCCchHHHHhhhcCCc---eeEEEEecCCHHHHHHHH---HcC--CCcEEEeecccCCC---------CCCC
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELL---TMCIANYEASGSQVQLTL---ERG--LPAMIGSFASKQLP---------YPSL 316 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~---~~~v~giD~s~~~l~~A~---erg--~~~~~~~~d~~~Lp---------f~d~ 316 (474)
..+|||+.+-+|.=+..|.+.... ...+++-|.+..-+.... .+- ....+...++...| ....
T Consensus 156 ~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~~~ 235 (375)
T KOG2198|consen 156 GDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKEQL 235 (375)
T ss_pred CCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhhhh
Confidence 379999999999999888776221 125788888876554332 221 12223333333322 2334
Q ss_pred CeeEEEec-----ccccc---------cc--------ccHHHHHHHHHhhcCCCcEEEEEeCCCCc
Q 011964 317 SFDMLHCA-----RCGVD---------WD--------QKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (474)
Q Consensus 317 sFDlVvss-----~~l~~---------~~--------~d~~~~L~ei~RvLKPGG~lvis~~~~~~ 360 (474)
.||-|.|- ...+. |. .-+-.+|..-.++||+||.++.++-..++
T Consensus 236 ~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 236 KFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred hcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 69999872 10000 11 11125788899999999999999976654
No 314
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=83.31 E-value=0.67 Score=40.96 Aligned_cols=35 Identities=23% Similarity=0.059 Sum_probs=29.8
Q ss_pred cccccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 93 HIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
...||||.|+++++.+|..|..|..-|. ++++...
T Consensus 31 r~~~g~R~Y~~~~l~~l~~I~~lr~~G~---sL~eI~~ 65 (126)
T cd04785 31 RTAGGYRLYGAAHVERLRFIRRARDLGF---SLEEIRA 65 (126)
T ss_pred cCCCCccccCHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 3468999999999999999999998888 6666554
No 315
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=82.93 E-value=0.58 Score=42.23 Aligned_cols=35 Identities=29% Similarity=0.145 Sum_probs=29.8
Q ss_pred cccccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 93 HIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
..-||||.|++.++.++..|..|+.-|. ++++...
T Consensus 32 r~~~gyR~Y~~~~l~~l~~I~~lr~~G~---sL~eI~~ 66 (140)
T PRK09514 32 RTEGGYRLYTEQDLQRLRFIRRAKQLGF---TLEEIRE 66 (140)
T ss_pred cCCCCCeeeCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 3478999999999999999999998888 6666554
No 316
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=82.92 E-value=7.7 Score=42.54 Aligned_cols=101 Identities=12% Similarity=0.154 Sum_probs=63.7
Q ss_pred CCceEEEECCCCch-HHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeeccc---------CCC----------
Q 011964 253 GVRTILDIGCGYGS-FGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK---------QLP---------- 312 (474)
Q Consensus 253 ~~~~VLDIGCGtG~-~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~---------~Lp---------- 312 (474)
.+.+|+=+|||.-. .+...++.- ...|+++|.+++-++.+++.|........... .+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 35799999999755 444455441 23689999999999999987754322111000 000
Q ss_pred CCC--CCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 313 YPS--LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 313 f~d--~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
+.+ +.+|+|+..-. ..-...+..+.+++.+.+||||.++....
T Consensus 242 ~~~~~~gaDVVIetag-~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTAL-IPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCC-CCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 111 36999997633 22212333345999999999999987654
No 317
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=82.41 E-value=0.63 Score=41.45 Aligned_cols=34 Identities=21% Similarity=0.059 Sum_probs=28.9
Q ss_pred ccccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
.-||||.|++.|+.+|..|..+..-|. ++++-..
T Consensus 33 ~~~gyR~Y~~~~l~~l~~I~~lr~~G~---sl~eI~~ 66 (131)
T TIGR02043 33 TDSGYRLYTDEDQKRLRFILKAKELGF---TLDEIKE 66 (131)
T ss_pred CCCCceecCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 369999999999999999999988888 6666554
No 318
>cd04777 HTH_MerR-like_sg1 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 1), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=81.31 E-value=0.29 Score=41.93 Aligned_cols=33 Identities=21% Similarity=-0.049 Sum_probs=29.0
Q ss_pred cccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
-||||+|++.++.++..|..++.=|. ++++-..
T Consensus 31 ~~g~r~Y~~~~~~~l~~I~~lr~~G~---sL~eI~~ 63 (107)
T cd04777 31 KGGQYFFDEKCQDDLEFILELKGLGF---SLIEIQK 63 (107)
T ss_pred CCCccccCHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 48999999999999999999988888 7777665
No 319
>cd04773 HTH_TioE_rpt2 Second Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD mainly contains the C-terminal or second repeat (rpt2) of these tandem MerR-like domain proteins.
Probab=81.17 E-value=0.74 Score=39.58 Aligned_cols=34 Identities=26% Similarity=0.153 Sum_probs=28.4
Q ss_pred ccccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
..||||+|++.|+.++..|..|..-|. ++++-..
T Consensus 32 ~~~g~R~Y~~~dl~~l~~I~~lr~~G~---~l~~I~~ 65 (108)
T cd04773 32 PETGYRVYDPSDVRDARLIHLLRRGGY---LLEQIAT 65 (108)
T ss_pred CCCCceeeCHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 348999999999999999999998888 5555443
No 320
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=80.90 E-value=0.89 Score=39.77 Aligned_cols=33 Identities=24% Similarity=0.123 Sum_probs=28.9
Q ss_pred cccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
.||||.|+++++.++..|..|..-|. ++++...
T Consensus 33 ~~gyR~Y~~~~i~~l~~I~~lr~~G~---sl~eI~~ 65 (123)
T cd04770 33 ENGYRLYGEADLARLRFIRRAQALGF---SLAEIRE 65 (123)
T ss_pred CCCCccCCHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 58999999999999999999988888 6666654
No 321
>cd04764 HTH_MlrA-like_sg1 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 1). The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA-like proteins in this group appear to lack the long dimerization helix seen in the N-terminal domains of typical MerR-like proteins.
Probab=80.89 E-value=0.68 Score=35.89 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=28.6
Q ss_pred cccccceechhhhhhHHHhhhhhccCCCCcCcccccc
Q 011964 93 HIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCS 129 (474)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~ 129 (474)
...+|||.|++.|+.++..|..++.-|. ++++..
T Consensus 30 ~~~~g~R~y~~~~l~~l~~i~~l~~~g~---~l~~i~ 63 (67)
T cd04764 30 RTENGRRYYTDEDIELLKKIKTLLEKGL---SIKEIK 63 (67)
T ss_pred CCCCCceeeCHHHHHHHHHHHHHHHCCC---CHHHHH
Confidence 4568999999999999999999988777 666543
No 322
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=80.86 E-value=22 Score=35.53 Aligned_cols=102 Identities=18% Similarity=0.245 Sum_probs=63.1
Q ss_pred CceEEEECCCCchHHHHhhh----cCCceeEEEEecCCHHHHHHHHHc------CCCcEEEeecc----cCCCCCCCCee
Q 011964 254 VRTILDIGCGYGSFGAHLFS----KELLTMCIANYEASGSQVQLTLER------GLPAMIGSFAS----KQLPYPSLSFD 319 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~----~g~~~~~v~giD~s~~~l~~A~er------g~~~~~~~~d~----~~Lpf~d~sFD 319 (474)
.-+.+|+|.|+..=+..|.+ ++. ...++++|++...+....+. ++++.-..++. ..+| ...--
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~-~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~R 155 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGS-LLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRR 155 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCC-cceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeE
Confidence 46899999999887776654 343 36889999999887533221 33443333332 2233 33333
Q ss_pred EEE-eccccccccccH-HHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 320 MLH-CARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 320 lVv-ss~~l~~~~~d~-~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
+++ ....+-++.+++ ..+|..+...|+||-+|++-+-..
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~ 196 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLR 196 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecccc
Confidence 332 222333443433 478999999999999999865433
No 323
>PF13411 MerR_1: MerR HTH family regulatory protein; PDB: 2JML_A 3GP4_A 3GPV_B.
Probab=80.76 E-value=0.7 Score=35.78 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=24.2
Q ss_pred cccccceechhhhhhHHHhhhhhccCCC
Q 011964 93 HIYHGYRRLQEQLVSDLWDIGEISLGSS 120 (474)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~~~~g~~ 120 (474)
...||||.|+++|++.+..|..|..-|.
T Consensus 30 ~~~~g~r~y~~~dv~~l~~i~~l~~~G~ 57 (69)
T PF13411_consen 30 RDENGYRYYSEEDVERLREIKELRKQGM 57 (69)
T ss_dssp ESTTSSEEE-HHHHHHHHHHHHHHHTTT
T ss_pred cccCceeeccHHHHHHHHHHHHHHHCcC
Confidence 3679999999999999999999988776
No 324
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=80.73 E-value=0.78 Score=41.59 Aligned_cols=33 Identities=12% Similarity=-0.008 Sum_probs=27.8
Q ss_pred ccccceechhhhhhHHHhhhhhccCCCCcCcccccc
Q 011964 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCS 129 (474)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~ 129 (474)
-.||||+|+++|+.++..|..++.-|. ++++-.
T Consensus 32 ~~~g~R~Y~~~di~~l~~I~~lr~~G~---sL~eI~ 64 (142)
T TIGR01950 32 NSGNQRRYKRDVLRRVAVIKAAQRVGI---PLATIG 64 (142)
T ss_pred CCCCCEEECHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 358999999999999999999988888 555544
No 325
>cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an
Probab=80.17 E-value=0.84 Score=39.94 Aligned_cols=25 Identities=16% Similarity=-0.053 Sum_probs=23.6
Q ss_pred ccceechhhhhhHHHhhhhhccCCC
Q 011964 96 HGYRRLQEQLVSDLWDIGEISLGSS 120 (474)
Q Consensus 96 ~~yr~~~~~~~~~~~~~~~~~~g~~ 120 (474)
||||.|+++++.+|..|..+..-|.
T Consensus 33 ~gyR~Y~~~~l~~l~~I~~lr~~G~ 57 (120)
T cd04781 33 GLRRQYDPQVLDRLALIALGRAAGF 57 (120)
T ss_pred CCceecCHHHHHHHHHHHHHHHcCC
Confidence 7999999999999999999988888
No 326
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=79.93 E-value=7.1 Score=41.99 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=65.2
Q ss_pred CCceEEEECCCCch--HHHHhhhcCCceeEEEEecCCHHHHHHHHHc--C---C-CcEEE--eecccCCCCCC-CCeeEE
Q 011964 253 GVRTILDIGCGYGS--FGAHLFSKELLTMCIANYEASGSQVQLTLER--G---L-PAMIG--SFASKQLPYPS-LSFDML 321 (474)
Q Consensus 253 ~~~~VLDIGCGtG~--~~~~La~~g~~~~~v~giD~s~~~l~~A~er--g---~-~~~~~--~~d~~~Lpf~d-~sFDlV 321 (474)
.+..++|+|.|.|. ++.....+. ..-.++.+|.+.+|....... + + ...+. +..-..+|.+. +.||+|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 34678888776554 444444442 235678899999998766432 1 0 11111 22234566544 459999
Q ss_pred EeccccccccccH--HHHHHH-HHhhcCCCcEEEEEeCCCC
Q 011964 322 HCARCGVDWDQKD--GILLLE-VDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 322 vss~~l~~~~~d~--~~~L~e-i~RvLKPGG~lvis~~~~~ 359 (474)
+|++.+++..... .....+ +.+..++||++++.+....
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 9999877763222 233444 5567899999999987654
No 327
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=79.91 E-value=0.98 Score=39.00 Aligned_cols=34 Identities=18% Similarity=0.006 Sum_probs=28.5
Q ss_pred ccccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
.-||||.|+++++.++..|..+..-|. ++++-..
T Consensus 32 ~~~gyR~Y~~~~l~~l~~I~~lr~~G~---sL~eI~~ 65 (113)
T cd01109 32 DENGIRDFTEEDLEWLEFIKCLRNTGM---SIKDIKE 65 (113)
T ss_pred CCCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 459999999999999999999987777 6666554
No 328
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=79.53 E-value=11 Score=37.73 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=57.3
Q ss_pred ceEEEECCC-CchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d 333 (474)
.+||-+|+| .|..+..+++.. ...++.++.+++..+.+++.+....+.........-..+.+|+|+....
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~------- 234 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV------- 234 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC-------
Confidence 678888886 666666666552 2467778888888888866664322221110000001246898885421
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeC
Q 011964 334 DGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 334 ~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
....+.++.+.|+++|.++....
T Consensus 235 ~~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 235 SGAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred cHHHHHHHHHhcccCCEEEEECC
Confidence 12367888999999999987753
No 329
>PRK10742 putative methyltransferase; Provisional
Probab=79.53 E-value=8.4 Score=38.30 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=38.6
Q ss_pred HHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHH
Q 011964 235 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT 294 (474)
Q Consensus 235 ~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A 294 (474)
+.+.+.+.++.+ ..-+|||.=+|+|..+..++.+|. .|+++|-++......
T Consensus 76 ~~l~kAvglk~g------~~p~VLD~TAGlG~Da~~las~G~---~V~~vEr~p~vaalL 126 (250)
T PRK10742 76 EAVAKAVGIKGD------YLPDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALL 126 (250)
T ss_pred cHHHHHhCCCCC------CCCEEEECCCCccHHHHHHHHcCC---EEEEEECCHHHHHHH
Confidence 355666665554 223899999999999999999974 599999998776443
No 330
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=79.44 E-value=10 Score=36.14 Aligned_cols=94 Identities=23% Similarity=0.217 Sum_probs=59.8
Q ss_pred CceEEEECCCC-chHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----CCCCCCeeEEEecccc
Q 011964 254 VRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARCG 327 (474)
Q Consensus 254 ~~~VLDIGCGt-G~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L-----pf~d~sFDlVvss~~l 327 (474)
..+||.+|+|. |..+..+++.. ...+++++.++...+.+++.+....+...+ ... ....+.+|+|+....
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~d~vi~~~~- 210 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKELGADHVIDYKE-EDLEEELRLTGGGGADVVIDAVG- 210 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhCCceeccCCc-CCHHHHHHHhcCCCCCEEEECCC-
Confidence 36899999985 66666666652 257788888888888877665322221110 000 112456999986422
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
. ...+..+.+.|+++|.++.....
T Consensus 211 -----~-~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 211 -----G-PETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred -----C-HHHHHHHHHhcccCCEEEEEccC
Confidence 1 13677788899999999987643
No 331
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=79.38 E-value=0.94 Score=39.95 Aligned_cols=34 Identities=29% Similarity=0.226 Sum_probs=28.7
Q ss_pred ccccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
.-||||.|++.|+.++..|..|..-|. ++++-..
T Consensus 32 ~~~gyR~Y~~~~l~~l~~I~~lr~~G~---sL~eI~~ 65 (126)
T cd04783 32 PEGGYRRYPEETVTRLRFIKRAQELGF---TLDEIAE 65 (126)
T ss_pred CCCCCeecCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 468999999999999999999998888 5555443
No 332
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=79.13 E-value=1.2 Score=37.81 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=22.3
Q ss_pred ccccceechhhhhhHHHhhhhhccC
Q 011964 94 IYHGYRRLQEQLVSDLWDIGEISLG 118 (474)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~~~~g 118 (474)
.-||||.|++.|+.++..|..|+.|
T Consensus 32 ~~~g~R~Y~~~~v~~l~~I~~l~~g 56 (99)
T cd04772 32 TANGYRIYTDKHIAALRAYRALLPG 56 (99)
T ss_pred CCCCCeecCHHHHHHHHHHHHHhhC
Confidence 4689999999999999999999754
No 333
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=79.03 E-value=13 Score=37.87 Aligned_cols=88 Identities=16% Similarity=0.129 Sum_probs=56.7
Q ss_pred ceEEEECCC-CchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d 333 (474)
.+||=.|+| .|.++..+++.. ...+++++.+++-++.+++.|....+.. ... ..+.+|+++-... .
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~~Ga~~vi~~---~~~--~~~~~d~~i~~~~------~ 233 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALALGAASAGGA---YDT--PPEPLDAAILFAP------A 233 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHhCCceeccc---ccc--CcccceEEEECCC------c
Confidence 688888875 344445555542 2357788888888999998876543221 111 1235887653321 1
Q ss_pred HHHHHHHHHhhcCCCcEEEEEeC
Q 011964 334 DGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 334 ~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
...+.+..+.|++||.+++...
T Consensus 234 -~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 -GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -HHHHHHHHHhhCCCcEEEEEec
Confidence 2378889999999999998764
No 334
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.90 E-value=12 Score=38.64 Aligned_cols=99 Identities=12% Similarity=0.059 Sum_probs=64.8
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC---------CCCCCCeeEEEec
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL---------PYPSLSFDMLHCA 324 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L---------pf~d~sFDlVvss 324 (474)
..+||=+|+|+=.+...+..+.+-...|+.+|.++.-++.|++-|..+.......... -+.+..||+++-.
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dC 249 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDC 249 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEc
Confidence 3789999999644444444333445789999999999999999776554432221111 1233458888743
Q ss_pred cccccccccHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 325 ~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
.. . +..++-....+|+||.+++......
T Consensus 250 sG-~------~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 250 SG-A------EVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred cC-c------hHHHHHHHHHhccCCEEEEeccCCC
Confidence 21 1 3356666788999999888886554
No 335
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=78.21 E-value=13 Score=37.52 Aligned_cols=93 Identities=18% Similarity=0.214 Sum_probs=57.7
Q ss_pred CceEEEECCCC-chHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeec---ccCCCCCCCCeeEEEeccccc
Q 011964 254 VRTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFA---SKQLPYPSLSFDMLHCARCGV 328 (474)
Q Consensus 254 ~~~VLDIGCGt-G~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d---~~~Lpf~d~sFDlVvss~~l~ 328 (474)
..+||-.|||. |..+..+++. |+ ..+++++.++...+.+++.+....+ ... ...+....+.||+|+....
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~G~--~~v~~~~~s~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~~~~vd~vld~~g-- 240 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRAGA--AEIVATDLADAPLAVARAMGADETV-NLARDPLAAYAADKGDFDVVFEASG-- 240 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--cEEEEECCCHHHHHHHHHcCCCEEE-cCCchhhhhhhccCCCccEEEECCC--
Confidence 36788888764 5565556654 32 2577888888888877776643222 111 1112112235899985422
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. ...+.++.+.|+++|.++....
T Consensus 241 ---~--~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 241 ---A--PAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred ---C--HHHHHHHHHHHhcCCEEEEEec
Confidence 1 3467889999999999997653
No 336
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=78.02 E-value=0.48 Score=39.32 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=29.5
Q ss_pred cccccceechhhhhhHHHhhhhhcc-CCCCcCccccccc
Q 011964 93 HIYHGYRRLQEQLVSDLWDIGEISL-GSSRSKDLEFCSE 130 (474)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~~~~-g~~~~~~~~~C~~ 130 (474)
..-+|||+|++.|+.++..|..|+. -|. +++....
T Consensus 31 r~~~g~R~y~~~dv~~l~~i~~L~~d~g~---~l~~i~~ 66 (91)
T cd04766 31 RTDGGTRRYSERDIERLRRIQRLTQELGV---NLAGVKR 66 (91)
T ss_pred cCCCCCeeECHHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 3457999999999999999999987 667 6777766
No 337
>cd04780 HTH_MerR-like_sg5 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 5), N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=77.80 E-value=0.96 Score=38.08 Aligned_cols=35 Identities=17% Similarity=0.132 Sum_probs=29.4
Q ss_pred cccccceechhhhhhHHHhhhhhcc-CCCCcCccccccc
Q 011964 93 HIYHGYRRLQEQLVSDLWDIGEISL-GSSRSKDLEFCSE 130 (474)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~~~~-g~~~~~~~~~C~~ 130 (474)
..-||||.|++.+++++..|+.|.. .|. +++++..
T Consensus 31 r~~~g~r~Y~~~dv~~l~~I~~L~~~~G~---~l~~I~~ 66 (95)
T cd04780 31 RLAPNQAEYSEAHVERLRLIRALQQEGGL---PISQIKE 66 (95)
T ss_pred CCCCCCeecCHHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 4458999999999999999999975 577 6777776
No 338
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=77.30 E-value=25 Score=35.31 Aligned_cols=92 Identities=14% Similarity=0.071 Sum_probs=58.9
Q ss_pred ceEEEECC--CCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----CCCCCCeeEEEecccc
Q 011964 255 RTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARCG 327 (474)
Q Consensus 255 ~~VLDIGC--GtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L-----pf~d~sFDlVvss~~l 327 (474)
.+||=.|. |.|..+..+++.. ...+++++.+++..+.+++.|....+..-+.... ....+.+|+|+-...
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G- 216 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG- 216 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC-
Confidence 67888874 5777777777762 2467778888888888887775433321110011 112346899884311
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
...+.+..++|++||.++....
T Consensus 217 -------~~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 217 -------GEFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred -------HHHHHHHHHHhCcCcEEEEecc
Confidence 2256888999999999997653
No 339
>cd01104 HTH_MlrA-CarA Helix-Turn-Helix DNA binding domain of the transcription regulators MlrA and CarA. Helix-turn-helix (HTH) transcription regulator MlrA (merR-like regulator A), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. Its close homolog, CarA from Myxococcus xanthus, is involved in activation of the carotenoid biosynthesis genes by light. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules. Many MlrA- and CarA-like proteins in this group appear to lack the long dimerization helix seen i
Probab=77.29 E-value=1.2 Score=34.34 Aligned_cols=26 Identities=23% Similarity=0.119 Sum_probs=23.6
Q ss_pred cccceechhhhhhHHHhhhhhccCCC
Q 011964 95 YHGYRRLQEQLVSDLWDIGEISLGSS 120 (474)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~~~~g~~ 120 (474)
-||||.|++++++.++.|..|..-|.
T Consensus 33 ~~~~r~yt~~~v~~l~~i~~l~~~g~ 58 (68)
T cd01104 33 DGGHRLYSEADVARLRLIRRLTSEGV 58 (68)
T ss_pred CCCCeecCHHHHHHHHHHHHHHHCCC
Confidence 47999999999999999999988776
No 340
>cd01279 HTH_HspR-like Helix-Turn-Helix DNA binding domain of HspR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator HspR and related proteins, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=77.16 E-value=0.48 Score=40.04 Aligned_cols=35 Identities=17% Similarity=0.111 Sum_probs=29.8
Q ss_pred cccccceechhhhhhHHHhhhhhcc-CCCCcCccccccc
Q 011964 93 HIYHGYRRLQEQLVSDLWDIGEISL-GSSRSKDLEFCSE 130 (474)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~~~~-g~~~~~~~~~C~~ 130 (474)
...+|||+|+++|+.+++.|..|+. .|. ++++...
T Consensus 31 r~~~g~R~Ys~~dv~~l~~I~~L~~~~G~---~l~~i~~ 66 (98)
T cd01279 31 RTNGGGRRYSNNDLELLRQVQRLSQDEGF---NLAGIKR 66 (98)
T ss_pred cCCCCCeeECHHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 3458999999999999999999988 777 6777766
No 341
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=77.02 E-value=7.1 Score=43.99 Aligned_cols=100 Identities=13% Similarity=0.099 Sum_probs=57.3
Q ss_pred CceEEEECCCCchHHHHhhhc-------CC----ceeEEEEecCC---HHHHHHHHH--------------------cCC
Q 011964 254 VRTILDIGCGYGSFGAHLFSK-------EL----LTMCIANYEAS---GSQVQLTLE--------------------RGL 299 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~-------g~----~~~~v~giD~s---~~~l~~A~e--------------------rg~ 299 (474)
.-+|+|+|-|+|.+.....+. +. ...+++.+|.. .+.+..+.. .+.
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 358999999999977665521 11 13677888753 233322211 011
Q ss_pred ----------CcEEEeecccC-CCCCCCCeeEEEeccccccccccH----HHHHHHHHhhcCCCcEEEEEe
Q 011964 300 ----------PAMIGSFASKQ-LPYPSLSFDMLHCARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 300 ----------~~~~~~~d~~~-Lpf~d~sFDlVvss~~l~~~~~d~----~~~L~ei~RvLKPGG~lvis~ 355 (474)
...+..+|+.+ ++--...||+++.-.. -. ..++ ..+|+++.|+++|||.|.-.+
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~F-sP-~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGF-AP-AKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCC-CC-ccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 11123344332 2211246999986521 11 1233 479999999999999998543
No 342
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=76.51 E-value=10 Score=36.43 Aligned_cols=108 Identities=8% Similarity=-0.014 Sum_probs=66.9
Q ss_pred CCceEEEECCCCchHHHHhhhc---CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC-------CCCCCeeEEE
Q 011964 253 GVRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP-------YPSLSFDMLH 322 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~---g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lp-------f~d~sFDlVv 322 (474)
.++.|+|+|.-.|..+.+++.. ......+.++|++-..+..+..+-..+.+..++..+.. ...+.--+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 3578999998888777666543 22346788889887666555444445666666544432 1122223333
Q ss_pred eccccccccccHHHHHHHHHhhcCCCcEEEEEeCCCCch
Q 011964 323 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQ 361 (474)
Q Consensus 323 ss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~ 361 (474)
|-.+-|++ ...-.-|+-..++|.-|-|+++.+-..+.+
T Consensus 149 ilDsdHs~-~hvLAel~~~~pllsaG~Y~vVeDs~v~dl 186 (237)
T COG3510 149 ILDSDHSM-EHVLAELKLLAPLLSAGDYLVVEDSNVNDL 186 (237)
T ss_pred EecCCchH-HHHHHHHHHhhhHhhcCceEEEecccccCC
Confidence 43443333 433456777788999999999988766543
No 343
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=76.47 E-value=6.5 Score=36.89 Aligned_cols=40 Identities=13% Similarity=0.022 Sum_probs=32.3
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHH
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 296 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~e 296 (474)
...|||.=||+|+.+....+.| -..+|+|+++...+.|.+
T Consensus 192 gdiVlDpF~GSGTT~~aa~~l~---R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 192 GDIVLDPFAGSGTTAVAAEELG---RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp T-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred ceeeehhhhccChHHHHHHHcC---CeEEEEeCCHHHHHHhcC
Confidence 4789999999999988887765 468999999999998864
No 344
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=76.26 E-value=16 Score=36.57 Aligned_cols=92 Identities=16% Similarity=0.138 Sum_probs=56.9
Q ss_pred ceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC----CCCCCCeeEEEeccccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL----PYPSLSFDMLHCARCGV 328 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L----pf~d~sFDlVvss~~l~ 328 (474)
.+||-+|+| .|..+..+++. |. ..+..++.+++..+.+++.+... +...+.... ....+.+|+|+....
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G~--~~v~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~vd~v~~~~~-- 235 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNGA--SRVTVAEPNEEKLELAKKLGATE-TVDPSREDPEAQKEDNPYGFDVVIEATG-- 235 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--cEEEEECCCHHHHHHHHHhCCeE-EecCCCCCHHHHHHhcCCCCcEEEECCC--
Confidence 688888865 24455555554 32 12677788888888887766542 221111110 113456999985421
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
....+.++.+.|+++|.++....
T Consensus 236 -----~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 236 -----VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred -----ChHHHHHHHHHHhcCCEEEEEec
Confidence 13478888999999999987654
No 345
>cd04774 HTH_YfmP Helix-Turn-Helix DNA binding domain of the YfmP transcription regulator. Helix-turn-helix (HTH) transcription regulator, YfmP, and related proteins; N-terminal domain. YfmP regulates the multidrug efflux protein, YfmO, and indirectly regulates the expression of the Bacillus subtilis copZA operon encoding a metallochaperone, CopZ, and a CPx-type ATPase efflux protein, CopA. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=75.80 E-value=1.4 Score=37.17 Aligned_cols=34 Identities=18% Similarity=0.035 Sum_probs=27.9
Q ss_pred cccccceechhhhhhHHHhhhhhcc-CCCCcCcccccc
Q 011964 93 HIYHGYRRLQEQLVSDLWDIGEISL-GSSRSKDLEFCS 129 (474)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~~~~-g~~~~~~~~~C~ 129 (474)
..-||||.|++.|+.++..|..|.. .|. ++++-.
T Consensus 30 r~~~g~R~Y~~~dv~~l~~I~~L~~~~G~---~l~ei~ 64 (96)
T cd04774 30 RSEGRYRLYSEEDLKRLERILRLREVLGF---SLQEVT 64 (96)
T ss_pred cCCCCCEEECHHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 3459999999999999999999988 677 555544
No 346
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=75.38 E-value=11 Score=38.62 Aligned_cols=83 Identities=11% Similarity=-0.009 Sum_probs=52.4
Q ss_pred hhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcC----CCcEEEeec
Q 011964 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFA 307 (474)
Q Consensus 232 ~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg----~~~~~~~~d 307 (474)
-+.+++.+.+...++ ..++|.--|.|..+..+++.... ..++++|-++.+++.|+++- -.+.+...+
T Consensus 7 Vll~Evl~~L~~~~~--------g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~ 77 (310)
T PF01795_consen 7 VLLKEVLEALNPKPG--------GIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFDDRFIFIHGN 77 (310)
T ss_dssp TTHHHHHHHHT--TT---------EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-
T ss_pred ccHHHHHHhhCcCCC--------ceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhccceEEEEecc
Confidence 345566666665544 68999999999999999987433 78999999999999998763 234455544
Q ss_pred ccCCC-----C-CCCCeeEEEe
Q 011964 308 SKQLP-----Y-PSLSFDMLHC 323 (474)
Q Consensus 308 ~~~Lp-----f-~d~sFDlVvs 323 (474)
..++. . .-..+|.|+.
T Consensus 78 F~~l~~~l~~~~~~~~~dgiL~ 99 (310)
T PF01795_consen 78 FSNLDEYLKELNGINKVDGILF 99 (310)
T ss_dssp GGGHHHHHHHTTTTS-EEEEEE
T ss_pred HHHHHHHHHHccCCCccCEEEE
Confidence 44332 2 2346777775
No 347
>PRK15002 redox-sensitivie transcriptional activator SoxR; Provisional
Probab=74.41 E-value=1.5 Score=40.26 Aligned_cols=35 Identities=14% Similarity=-0.036 Sum_probs=29.2
Q ss_pred cccccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 93 HIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
...||||+|++.++.+|..|..++.-|. ++++-..
T Consensus 41 r~~~g~R~Y~~~~i~~L~~I~~lr~lG~---sL~eIk~ 75 (154)
T PRK15002 41 RNSGNQRRYKRDVLRYVAIIKIAQRIGI---PLATIGE 75 (154)
T ss_pred cCCCCCEEECHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 3458999999999999999999988888 6666544
No 348
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=74.06 E-value=16 Score=37.38 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc
Q 011964 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297 (474)
Q Consensus 231 ~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er 297 (474)
.-..++..+.+...++ ...+|.--|.|..+..+++.......++++|-++.+++.|+++
T Consensus 9 pVLl~E~i~~L~~~~~--------giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~ 67 (314)
T COG0275 9 PVLLNEVVELLAPKPD--------GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKER 67 (314)
T ss_pred chHHHHHHHhcccCCC--------cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHH
Confidence 4455566666665555 7899999999999999999865456799999999999999886
No 349
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=73.80 E-value=1.6 Score=39.18 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=29.4
Q ss_pred ccccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
.-||||.|++.++.++..|..+..-|. ++++...
T Consensus 31 ~~~g~R~Y~~~~l~~l~~I~~lr~~G~---sL~eI~~ 64 (134)
T cd04779 31 SDSNYRYYDETALDRLQLIEHLKGQRL---SLAEIKD 64 (134)
T ss_pred CCCCCeeECHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 447999999999999999999998888 7776665
No 350
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=73.54 E-value=9.6 Score=41.78 Aligned_cols=94 Identities=12% Similarity=0.152 Sum_probs=59.8
Q ss_pred CceEEEECCCCc-hHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccC-----------C--C-------
Q 011964 254 VRTILDIGCGYG-SFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-----------L--P------- 312 (474)
Q Consensus 254 ~~~VLDIGCGtG-~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~-----------L--p------- 312 (474)
+.+||=+|+|.- ..+..++..- ...++.+|.++..++.+++.+.... ..+... + +
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~lGa~~v--~v~~~e~g~~~~gYa~~~s~~~~~~~~~ 239 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQSMGAEFL--ELDFKEEGGSGDGYAKVMSEEFIAAEME 239 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEE--eccccccccccccceeecCHHHHHHHHH
Confidence 479999999965 4444444441 2358889999998888887654321 111100 0 0
Q ss_pred -CC--CCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEE
Q 011964 313 -YP--SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 352 (474)
Q Consensus 313 -f~--d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lv 352 (474)
++ -..+|+|+.+- +..-.+.+.-..+++.+.+|||+.++
T Consensus 240 ~~~e~~~~~DIVI~Ta-lipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 240 LFAAQAKEVDIIITTA-LIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHhCCCCEEEECc-ccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 11 24599998763 34443444457888999999999877
No 351
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=73.40 E-value=1.4 Score=37.35 Aligned_cols=35 Identities=17% Similarity=0.021 Sum_probs=28.7
Q ss_pred cccccceechhhhhhHHHhhhhh-ccCCCCcCccccccc
Q 011964 93 HIYHGYRRLQEQLVSDLWDIGEI-SLGSSRSKDLEFCSE 130 (474)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~~-~~g~~~~~~~~~C~~ 130 (474)
...||||+|++.|+.+++.|+.+ +..|. +++++..
T Consensus 31 r~~~g~R~Yt~~di~~l~~I~~llr~~G~---~l~~i~~ 66 (99)
T cd04765 31 KRAGGRRYYRPKDVELLLLIKHLLYEKGY---TIEGAKQ 66 (99)
T ss_pred CCCCCCeeeCHHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 34689999999999999999974 66667 6777765
No 352
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=73.28 E-value=13 Score=39.04 Aligned_cols=99 Identities=19% Similarity=0.174 Sum_probs=68.9
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc-----CCCcEEEeecccCCCCC-CCCeeEEEecccc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAMIGSFASKQLPYP-SLSFDMLHCARCG 327 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er-----g~~~~~~~~d~~~Lpf~-d~sFDlVvss~~l 327 (474)
+.+|||-=+|+|.=+..++.... ...++..|+|+..++.++++ +....+...|+..+-.. ...||+|=.-
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD--- 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDID--- 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecC---
Confidence 47899999999999988886632 23789999999999988765 22333443444433222 3578887422
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
.+ ..+..++....+.+|.||++.++-...
T Consensus 129 -PF-GSPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 129 -PF-GSPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred -CC-CCCchHHHHHHHHhhcCCEEEEEeccc
Confidence 22 234568889999999999999975433
No 353
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=73.22 E-value=1.7 Score=36.83 Aligned_cols=33 Identities=24% Similarity=0.143 Sum_probs=28.2
Q ss_pred cccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
-||||.|++.|+.++..|..|...|. ++++...
T Consensus 33 ~~g~R~y~~~di~~l~~i~~lr~~g~---~l~~i~~ 65 (103)
T cd01106 33 ENGYRLYTEEDLERLQQILFLKELGF---SLKEIKE 65 (103)
T ss_pred CCCceeeCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 48999999999999999999988888 6666554
No 354
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.17 E-value=33 Score=35.03 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=69.9
Q ss_pred EEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCC-CCCeeEEEeccccccc-----
Q 011964 257 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP-SLSFDMLHCARCGVDW----- 330 (474)
Q Consensus 257 VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~-d~sFDlVvss~~l~~~----- 330 (474)
|+|+-||.|.+..-|.+.|+ ..+.++|+++..++.-+.+... .+...|+..+... -..+|+++...---.+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~--~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGF--KCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHcCC--eEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence 68999999999999988875 4567899999888877665332 3334455554321 1248999864210011
Q ss_pred ---cccH-HHHHHHHHhhc---CCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEE
Q 011964 331 ---DQKD-GILLLEVDRVL---KPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 388 (474)
Q Consensus 331 ---~~d~-~~~L~ei~RvL---KPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~ 388 (474)
..+. ..++.++.|++ +|. +++.+-+..-.. ......+..+....+.+++...
T Consensus 78 ~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~----~~~~~~~~~i~~~l~~~GY~v~ 136 (315)
T TIGR00675 78 RKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVS----HDKGRTFKVIIETLEELGYKVY 136 (315)
T ss_pred cCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHh----cccchHHHHHHHHHHhCCCEEE
Confidence 1222 34555555555 664 555555432211 1112334555555666776653
No 355
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=72.13 E-value=18 Score=37.04 Aligned_cols=92 Identities=18% Similarity=0.163 Sum_probs=56.0
Q ss_pred ceEEEECCCC-chHHHHhhhcCCceeEEEEecC---CHHHHHHHHHcCCCcEEEeecccCC--CCCCCCeeEEEeccccc
Q 011964 255 RTILDIGCGY-GSFGAHLFSKELLTMCIANYEA---SGSQVQLTLERGLPAMIGSFASKQL--PYPSLSFDMLHCARCGV 328 (474)
Q Consensus 255 ~~VLDIGCGt-G~~~~~La~~g~~~~~v~giD~---s~~~l~~A~erg~~~~~~~~d~~~L--pf~d~sFDlVvss~~l~ 328 (474)
.+||=+|+|. |.++..+++.. ...+++++. ++.-++.+++.|... .....++. ....+.||+|+-.-.
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g-- 247 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATG-- 247 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcC--
Confidence 6788888763 55556666552 135666665 677788888776542 11111110 001246898885421
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
. ...+.+..++|++||.+++....
T Consensus 248 ----~-~~~~~~~~~~l~~~G~~v~~G~~ 271 (355)
T cd08230 248 ----V-PPLAFEALPALAPNGVVILFGVP 271 (355)
T ss_pred ----C-HHHHHHHHHHccCCcEEEEEecC
Confidence 1 23788899999999999887643
No 356
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=72.06 E-value=31 Score=35.38 Aligned_cols=93 Identities=14% Similarity=0.087 Sum_probs=59.4
Q ss_pred CceEEEECC--CCchHHHHhhhcCCceeEEEEecCCHHHHHHHH-HcCCCcEEEeecccCC-----CCCCCCeeEEEecc
Q 011964 254 VRTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGLPAMIGSFASKQL-----PYPSLSFDMLHCAR 325 (474)
Q Consensus 254 ~~~VLDIGC--GtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~-erg~~~~~~~~d~~~L-----pf~d~sFDlVvss~ 325 (474)
..+||=.|+ |.|.++..+++.. ...+++++.+++..+.++ +.|....+..-+...+ ....+.+|+|+-.-
T Consensus 159 g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~v 236 (348)
T PLN03154 159 GDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNV 236 (348)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECC
Confidence 368888887 4777887777762 246778888888888776 5665433321100011 01124689888431
Q ss_pred ccccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 326 ~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. ...+.+..+.|++||.+++...
T Consensus 237 G--------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 237 G--------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred C--------HHHHHHHHHHhccCCEEEEECc
Confidence 1 2377888999999999997653
No 357
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=71.45 E-value=21 Score=36.51 Aligned_cols=92 Identities=13% Similarity=0.069 Sum_probs=57.1
Q ss_pred ceEEEECCCC-chHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----C-CCCCCeeEEEeccc
Q 011964 255 RTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----P-YPSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGCGt-G~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L-----p-f~d~sFDlVvss~~ 326 (474)
.+||=+|+|. |..+..+++. |. ..++++|.++...+.+++.|....+. ....+. . .....+|+|+-.-.
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~G~--~~Vi~~~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~i~~~~~~~g~d~vid~~g 254 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALAGA--SKIIAVDIDDRKLEWAREFGATHTVN-SSGTDPVEAIRALTGGFGADVVIDAVG 254 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHHHcCCceEEc-CCCcCHHHHHHHHhCCCCCCEEEECCC
Confidence 6788888752 4445555554 32 24788899999999998877533221 111110 0 12235898884311
Q ss_pred cccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. ...+.+..+.|++||.+++...
T Consensus 255 ------~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 255 ------R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred ------C-HHHHHHHHHHhccCCEEEEECC
Confidence 1 2367788899999999998764
No 358
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=71.44 E-value=18 Score=36.95 Aligned_cols=93 Identities=13% Similarity=0.058 Sum_probs=54.9
Q ss_pred CceEEEECCCC-chHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEeccccccccc
Q 011964 254 VRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (474)
Q Consensus 254 ~~~VLDIGCGt-G~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~ 332 (474)
..+||=+|||. |.++..++++-.....++++|.+++-++.+++.+. .... ..+. .+..+|+|+-.-. - .
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~--~~~~---~~~~-~~~g~d~viD~~G-~---~ 233 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADE--TYLI---DDIP-EDLAVDHAFECVG-G---R 233 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCc--eeeh---hhhh-hccCCcEEEECCC-C---C
Confidence 36899899763 33444555431112467888999888888775332 1110 1111 1124898884311 0 1
Q ss_pred cHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 333 KDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 333 d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
.....+.+..++|++||.+++...
T Consensus 234 ~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 234 GSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred ccHHHHHHHHHhCcCCcEEEEEee
Confidence 123578899999999999998764
No 359
>cd04767 HTH_HspR-like_MBC Helix-Turn-Helix DNA binding domain of putative HspR-like transcription regulators. Putative helix-turn-helix (HTH) transcription regulator HspR-like proteins. Unlike the characterized HspR, these proteins have a C-terminal domain with putative metal binding cysteines (MBC). Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind spe
Probab=70.38 E-value=2.2 Score=37.67 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=29.6
Q ss_pred ccceechhhhhhHHHhhhhhcc-CCCCcCcccccccCCCCccCcC
Q 011964 96 HGYRRLQEQLVSDLWDIGEISL-GSSRSKDLEFCSEDFENYVPCF 139 (474)
Q Consensus 96 ~~yr~~~~~~~~~~~~~~~~~~-g~~~~~~~~~C~~~~~~y~pC~ 139 (474)
+|||+|++.|+.+|..|..|.. .|. ++++-.. +.+..||.
T Consensus 33 ~G~R~Ys~~dv~rL~~I~~L~~e~G~---~l~eI~~-~L~l~~~~ 73 (120)
T cd04767 33 NGQRLYSNNDLKRLRFIKKLINEKGL---NIAGVKQ-ILSMYPCW 73 (120)
T ss_pred CCcEEECHHHHHHHHHHHHHHHHcCC---CHHHHHH-HHHhCccc
Confidence 8999999999999999999976 666 4554443 33333553
No 360
>PRK11524 putative methyltransferase; Provisional
Probab=70.34 E-value=11 Score=37.91 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=35.9
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er 297 (474)
....|||-=||+|+.+....+.+ -..+|+|++++.++.|++|
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHH
Confidence 34789999999999888776664 4789999999999999887
No 361
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=70.23 E-value=24 Score=34.29 Aligned_cols=92 Identities=15% Similarity=0.107 Sum_probs=55.8
Q ss_pred CceEEEECCCC-chHHHHhhhcCCceeE-EEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccc
Q 011964 254 VRTILDIGCGY-GSFGAHLFSKELLTMC-IANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (474)
Q Consensus 254 ~~~VLDIGCGt-G~~~~~La~~g~~~~~-v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~ 331 (474)
..+||=.|+|. |..+..+++.. ... ++.++.+++..+.+++.+....+... ..-......+|+|+....
T Consensus 98 g~~vlI~g~g~vg~~~i~~a~~~--g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~d~vl~~~~----- 168 (277)
T cd08255 98 GERVAVVGLGLVGLLAAQLAKAA--GAREVVGVDPDAARRELAEALGPADPVAAD--TADEIGGRGADVVIEASG----- 168 (277)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCCcEEEECCCHHHHHHHHHcCCCcccccc--chhhhcCCCCCEEEEccC-----
Confidence 36777778764 44555555542 134 78889888888888877621111111 101113346898885311
Q ss_pred ccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 332 QKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 332 ~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. ...+.+..+.|+++|.++....
T Consensus 169 ~--~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 169 S--PSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred C--hHHHHHHHHHhcCCcEEEEEec
Confidence 1 2367888999999999987654
No 362
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.05 E-value=24 Score=32.62 Aligned_cols=97 Identities=11% Similarity=-0.055 Sum_probs=56.6
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CC--CcEEEeecccCCCCCCCCeeEEEeccc
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~--~~~~~~~d~~~Lpf~d~sFDlVvss~~ 326 (474)
+..+.+|+|.|.|..-...++.+. ..-+|++.++-.+..++-+ +. ...|..-|.....+.|-.+-+|+-.
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~--~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFga-- 147 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGL--RPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGA-- 147 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCC--CcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeeh--
Confidence 347899999999999888888763 4567899999888766543 22 3334433444444444334333322
Q ss_pred cccccccHHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
..+.++.+ ..+..-+..|-.++-.-++
T Consensus 148 -es~m~dLe---~KL~~E~p~nt~vvacRFP 174 (199)
T KOG4058|consen 148 -ESVMPDLE---DKLRTELPANTRVVACRFP 174 (199)
T ss_pred -HHHHhhhH---HHHHhhCcCCCeEEEEecC
Confidence 22223322 2333345566666655543
No 363
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=70.03 E-value=12 Score=36.97 Aligned_cols=83 Identities=22% Similarity=0.188 Sum_probs=44.5
Q ss_pred HHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHH---Hc---CC--------C
Q 011964 235 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL---ER---GL--------P 300 (474)
Q Consensus 235 ~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~---er---g~--------~ 300 (474)
+.+.+.+..+.+ ...+|||.-+|-|.-+..++..| ..|+++|-|+-+....+ ++ .. .
T Consensus 63 ~~l~kA~Glk~~------~~~~VLDaTaGLG~Da~vlA~~G---~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~r 133 (234)
T PF04445_consen 63 DPLAKAVGLKPG------MRPSVLDATAGLGRDAFVLASLG---CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRR 133 (234)
T ss_dssp SHHHHHTT-BTT------B---EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred cHHHHHhCCCCC------CCCEEEECCCcchHHHHHHHccC---CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhC
Confidence 345555554443 23489999999999999888766 47999999986543221 11 11 2
Q ss_pred cEEEeecccC-CCCCCCCeeEEEeccc
Q 011964 301 AMIGSFASKQ-LPYPSLSFDMLHCARC 326 (474)
Q Consensus 301 ~~~~~~d~~~-Lpf~d~sFDlVvss~~ 326 (474)
+.+..+|..+ |+.++++||+|+.--.
T Consensus 134 i~l~~~d~~~~L~~~~~s~DVVY~DPM 160 (234)
T PF04445_consen 134 IQLIHGDALEYLRQPDNSFDVVYFDPM 160 (234)
T ss_dssp EEEEES-CCCHCCCHSS--SEEEE--S
T ss_pred CEEEcCCHHHHHhhcCCCCCEEEECCC
Confidence 3455555443 4566889999997544
No 364
>PTZ00357 methyltransferase; Provisional
Probab=69.97 E-value=24 Score=40.07 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=60.2
Q ss_pred eEEEECCCCchHHHHhhhc----CCceeEEEEecCCHHHHHHHHHc--------------CCCcEEEeecccCCCCC---
Q 011964 256 TILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGSQVQLTLER--------------GLPAMIGSFASKQLPYP--- 314 (474)
Q Consensus 256 ~VLDIGCGtG~~~~~La~~----g~~~~~v~giD~s~~~l~~A~er--------------g~~~~~~~~d~~~Lpf~--- 314 (474)
.|+=+|+|-|-+.....+. ++ ...|+++|-++..+.+.+.+ +-.+.++..|+..+..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gv-kVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGV-RLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCC-cEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 5899999999987665433 43 46899999995533222211 11256777787776433
Q ss_pred --------CCCeeEEEeccccccccccH--HHHHHHHHhhcCC----CcE
Q 011964 315 --------SLSFDMLHCARCGVDWDQKD--GILLLEVDRVLKP----GGY 350 (474)
Q Consensus 315 --------d~sFDlVvss~~l~~~~~d~--~~~L~ei~RvLKP----GG~ 350 (474)
-+.+|+||+... -.+.++. ..-|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSELL-GSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELL-GSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhh-cccccccCCHHHHHHHHHhhhhhcccccc
Confidence 236999998643 4454433 3578888888876 776
No 365
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=69.88 E-value=5 Score=38.32 Aligned_cols=99 Identities=17% Similarity=0.125 Sum_probs=57.5
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC--------CCCCCCeeEEEecc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL--------PYPSLSFDMLHCAR 325 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L--------pf~d~sFDlVvss~ 325 (474)
..+|||+||-+|+++.-..++--+...+.|+|+-. ..--.|..+... .|..+- ..|+...|+|++-.
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh----~~p~~Ga~~i~~-~dvtdp~~~~ki~e~lp~r~VdvVlSDM 144 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH----IEPPEGATIIQG-NDVTDPETYRKIFEALPNRPVDVVLSDM 144 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee----ccCCCCcccccc-cccCCHHHHHHHHHhCCCCcccEEEecc
Confidence 47999999999999998887733455677888643 111112211111 122110 14677899999752
Q ss_pred ccccc----cccHH-------HHHHHHHhhcCCCcEEEEEeCCC
Q 011964 326 CGVDW----DQKDG-------ILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 326 ~l~~~----~~d~~-------~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
. ..- ..|.. .+|.-....++|+|.|+.-....
T Consensus 145 a-pnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 145 A-PNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred C-CCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 2 111 01211 24444456788999999876544
No 366
>smart00422 HTH_MERR helix_turn_helix, mercury resistance.
Probab=69.57 E-value=2.2 Score=32.94 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=24.0
Q ss_pred ccccceechhhhhhHHHhhhhhccCCC
Q 011964 94 IYHGYRRLQEQLVSDLWDIGEISLGSS 120 (474)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~~~~g~~ 120 (474)
.-+|||+|++.|+.++..+..|..-|.
T Consensus 32 ~~~g~r~y~~~dl~~l~~i~~lr~~g~ 58 (70)
T smart00422 32 TEGGYRLYSDEDLERLRFIKRLKELGF 58 (70)
T ss_pred CCCCCEecCHHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999977666
No 367
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=69.45 E-value=21 Score=36.74 Aligned_cols=92 Identities=13% Similarity=0.050 Sum_probs=56.7
Q ss_pred ceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----CCCCCCeeEEEecccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARCG 327 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L-----pf~d~sFDlVvss~~l 327 (474)
.+||=+|+| .|.++..+++. |. ..|+++|.++..++.+++.|....+...+ +++ ....+.+|+|+-...
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G~--~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~-~~~~~~i~~~~~~g~d~vid~~G- 268 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAGA--SQVVAVDLNEDKLALARELGATATVNAGD-PNAVEQVRELTGGGVDYAFEMAG- 268 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CcEEEEcCCHHHHHHHHHcCCceEeCCCc-hhHHHHHHHHhCCCCCEEEECCC-
Confidence 567778875 24455555554 32 25788899999999998877543322111 110 011235898884311
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. ...+....+.|++||.+++...
T Consensus 269 -----~-~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 269 -----S-VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred -----C-hHHHHHHHHHHhcCCEEEEEcc
Confidence 1 2467788899999999998764
No 368
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=67.86 E-value=25 Score=36.38 Aligned_cols=96 Identities=20% Similarity=0.195 Sum_probs=63.6
Q ss_pred ceEEEECCCC-chHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccC-----CCCCC-CCeeEEEecccc
Q 011964 255 RTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-----LPYPS-LSFDMLHCARCG 327 (474)
Q Consensus 255 ~~VLDIGCGt-G~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~-----Lpf~d-~sFDlVvss~~l 327 (474)
.+|+=+|||+ |.++..+++. .-...|+.+|.++.-++.|++.+-...+.....+. +.... ..||+|+=.-.
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~-~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKL-LGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 3899999996 6666666655 23467888999999999999854322222111100 01222 26999984322
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
...++.++.+++||||.+++.....
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 2348999999999999999987543
No 369
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=67.56 E-value=2.4 Score=37.03 Aligned_cols=31 Identities=19% Similarity=-0.144 Sum_probs=26.9
Q ss_pred cceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 97 GYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 97 ~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
|||.|++.++.++..|..+..-|. ++++...
T Consensus 33 gyR~Y~~~~l~~l~~I~~lr~~G~---~L~~I~~ 63 (118)
T cd04776 33 QTRVYSRRDRARLKLILRGKRLGF---SLEEIRE 63 (118)
T ss_pred CccccCHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 999999999999999999998888 6655553
No 370
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=67.26 E-value=25 Score=35.89 Aligned_cols=95 Identities=9% Similarity=0.104 Sum_probs=56.5
Q ss_pred CceEEEECCCC-chHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecc--cCC----C-C-CCCCee----E
Q 011964 254 VRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS--KQL----P-Y-PSLSFD----M 320 (474)
Q Consensus 254 ~~~VLDIGCGt-G~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~--~~L----p-f-~d~sFD----l 320 (474)
..+||=+|+|. |..+..+++.. ...++.++.+++.++.+++.+....+...+. .++ . + ....+| +
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~ 244 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWK 244 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCE
Confidence 36899999854 55555566552 2367888999999999988775433221110 000 0 1 112344 4
Q ss_pred EEeccccccccccHHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 321 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 321 Vvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
|+-.- .. ...+....++|++||.+++....
T Consensus 245 v~d~~------g~-~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 245 IFECS------GS-KPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred EEECC------CC-hHHHHHHHHHHhcCCeEEEECcC
Confidence 54211 11 34677788899999999987653
No 371
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=66.64 E-value=15 Score=38.75 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=32.0
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHH
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL 295 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~ 295 (474)
+...|+|+|.|.|.++..+.-.. ..+|.++|.|....+.|+
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHH
Confidence 45789999999999999987552 368999999976655443
No 372
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=66.12 E-value=32 Score=34.63 Aligned_cols=93 Identities=16% Similarity=0.123 Sum_probs=55.6
Q ss_pred ceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeec--ccCC-C-CCCCCeeEEEeccccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFA--SKQL-P-YPSLSFDMLHCARCGV 328 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d--~~~L-p-f~d~sFDlVvss~~l~ 328 (474)
.+||=+|+| .|.++..+++. |. ..++.++.+++..+.+++.+....+..-+ .+.+ . .....||+|+-...
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G~--~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g-- 240 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALGA--EDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSG-- 240 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCC--
Confidence 677778764 23344445544 32 23778899998888888877543322111 0011 1 12336999984321
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
....+.+..+.|+++|.+++...
T Consensus 241 -----~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 241 -----NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred -----CHHHHHHHHHHhhcCCEEEEEcC
Confidence 12356778899999999997664
No 373
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=66.03 E-value=49 Score=32.85 Aligned_cols=90 Identities=16% Similarity=0.088 Sum_probs=57.9
Q ss_pred ceEEEEC--CCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----CCCCCCeeEEEecccc
Q 011964 255 RTILDIG--CGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARCG 327 (474)
Q Consensus 255 ~~VLDIG--CGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L-----pf~d~sFDlVvss~~l 327 (474)
.+||=.| .|.|..+..+++.. ...+++++.+++..+.+++.|....+.. ...++ ....+.+|+|+-...
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~~Ga~~vi~~-~~~~~~~~v~~~~~~gvd~vld~~g- 220 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKELGFDAVFNY-KTVSLEEALKEAAPDGIDCYFDNVG- 220 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCEEEeC-CCccHHHHHHHHCCCCcEEEEECCC-
Confidence 6777777 35666777777652 2467788888888888888775433321 11111 112246898885421
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
...+.+..+.|+++|.++...
T Consensus 221 -------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 221 -------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred -------HHHHHHHHHhhccCCEEEEEc
Confidence 246788999999999998764
No 374
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=65.89 E-value=35 Score=34.30 Aligned_cols=92 Identities=16% Similarity=0.148 Sum_probs=56.8
Q ss_pred ceEEEECCCC-chHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccC----C--CCCCCCeeEEEecccc
Q 011964 255 RTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ----L--PYPSLSFDMLHCARCG 327 (474)
Q Consensus 255 ~~VLDIGCGt-G~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~----L--pf~d~sFDlVvss~~l 327 (474)
.+||-.|+|. |..+..+++. ....++.+..+++..+.+++.+....+. ..... + -.++..+|+|+....
T Consensus 161 ~~vLI~g~g~vG~~a~~lA~~--~g~~v~~~~~s~~~~~~~~~~g~~~v~~-~~~~~~~~~l~~~~~~~~vd~vld~~g- 236 (337)
T cd08261 161 DTVLVVGAGPIGLGVIQVAKA--RGARVIVVDIDDERLEFARELGADDTIN-VGDEDVAARLRELTDGEGADVVIDATG- 236 (337)
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCeEEEECCCHHHHHHHHHhCCCEEec-CcccCHHHHHHHHhCCCCCCEEEECCC-
Confidence 6788888763 5666666665 1245667777788888777666322221 11111 1 023446899986421
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
....+.++.+.|+++|.++....
T Consensus 237 ------~~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 237 ------NPASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred ------CHHHHHHHHHHHhcCCEEEEEcC
Confidence 13467889999999999987653
No 375
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=65.55 E-value=63 Score=33.19 Aligned_cols=123 Identities=12% Similarity=0.080 Sum_probs=76.3
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC---CCCCCeeEEEecccccc-
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP---YPSLSFDMLHCARCGVD- 329 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lp---f~d~sFDlVvss~~l~~- 329 (474)
..+++|+=||-|.+..-+...|+ ..+.++|+++..++.-+.+.....+...|...+. ++...+|+++...- |.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf--~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpP-CQ~ 79 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGF--EIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPP-CQD 79 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCC--eEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCC-Ccc
Confidence 35799999999999999988875 4677899999888776655432333333443332 22117899997522 11
Q ss_pred --------ccccHH----HHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCce
Q 011964 330 --------WDQKDG----ILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWE 386 (474)
Q Consensus 330 --------~~~d~~----~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~ 386 (474)
...|.. .-+.++...++| .+++.+-+..-.. . ....|+.+..-+++.++.
T Consensus 80 FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~gl~~---~--~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 80 FSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKGLLS---S--KGQTFDEIKKELEELGYG 141 (328)
T ss_pred hhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCchHHh---c--CchHHHHHHHHHHHcCCc
Confidence 112322 234556666788 6666665543211 1 334677777777777775
No 376
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=65.54 E-value=3.7 Score=35.59 Aligned_cols=31 Identities=26% Similarity=0.129 Sum_probs=25.8
Q ss_pred ccceechhhhhhHHHhhhhhccCCCCcCccc
Q 011964 96 HGYRRLQEQLVSDLWDIGEISLGSSRSKDLE 126 (474)
Q Consensus 96 ~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~ 126 (474)
+|||.|++.|+.++..|..+..-|...++.+
T Consensus 33 ~~yR~Y~~~d~~~l~~I~~lr~~G~sl~eI~ 63 (116)
T cd04769 33 GNYRVYDAQHVECLRFIKEARQLGFTLAELK 63 (116)
T ss_pred CCceeeCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 4999999999999999999988888443333
No 377
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=65.36 E-value=25 Score=34.62 Aligned_cols=93 Identities=17% Similarity=0.131 Sum_probs=56.3
Q ss_pred ceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecc-cCC-C-CCCCCeeEEEecccccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS-KQL-P-YPSLSFDMLHCARCGVD 329 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~-~~L-p-f~d~sFDlVvss~~l~~ 329 (474)
.+||=+|+| .|..+..+++. |. ..++.+|.++.-++.+++.+....+...+. ..+ . .....+|+|+-.-.
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~--~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G--- 196 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGA--ARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSG--- 196 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCC---
Confidence 678888875 33444445544 32 236777989888888888775432211110 000 0 12235898874321
Q ss_pred ccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 330 WDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 330 ~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. ...+.+..+.|+|+|.+++...
T Consensus 197 ---~-~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 197 ---A-TAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ---C-hHHHHHHHHHhcCCCEEEEecc
Confidence 1 3478888999999999998764
No 378
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=65.31 E-value=14 Score=36.04 Aligned_cols=46 Identities=17% Similarity=0.136 Sum_probs=31.8
Q ss_pred cCCceEEEECCCCchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHc
Q 011964 252 AGVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER 297 (474)
Q Consensus 252 ~~~~~VLDIGCGtG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~er 297 (474)
..+-++-|--||.|.+..-+.-. +-.-..|.+.|+++++++.|+++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kN 96 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKN 96 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHh
Confidence 45679999999999977654311 12346899999999999988764
No 379
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=65.23 E-value=14 Score=31.45 Aligned_cols=74 Identities=18% Similarity=0.086 Sum_probs=52.2
Q ss_pred ECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEeccccccccccHHHHHH
Q 011964 260 IGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLL 339 (474)
Q Consensus 260 IGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d~~~~L~ 339 (474)
+-||.|..+..++++ +-+.++++|+++.+.......++-.-+.+|+|+.+ +...-.+.
T Consensus 5 l~C~~GaSSs~la~k---------------m~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~-------PQv~~~~~ 62 (99)
T cd05565 5 VLCAGGGTSGLLANA---------------LNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILA-------PQMASYYD 62 (99)
T ss_pred EECCCCCCHHHHHHH---------------HHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEc-------ChHHHHHH
Confidence 668888666555543 66788889998887766666665444568988765 44456788
Q ss_pred HHHhhcCCCcEEEEEe
Q 011964 340 EVDRVLKPGGYFVWTS 355 (474)
Q Consensus 340 ei~RvLKPGG~lvis~ 355 (474)
++...+.+-|.-+..-
T Consensus 63 ~i~~~~~~~~ipv~~I 78 (99)
T cd05565 63 ELKKDTDRLGIKLVTT 78 (99)
T ss_pred HHHHHhhhcCCCEEEe
Confidence 8888888887755543
No 380
>PRK15043 transcriptional regulator MirA; Provisional
Probab=64.89 E-value=3.2 Score=41.05 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=23.9
Q ss_pred ccccceechhhhhhHHHhhhhhccCCC
Q 011964 94 IYHGYRRLQEQLVSDLWDIGEISLGSS 120 (474)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~~~~g~~ 120 (474)
.-||||+|+++|+.++..|..+..-|.
T Consensus 35 t~~G~R~Ys~~dv~rL~~I~~l~~~G~ 61 (243)
T PRK15043 35 TDGGHRLFNDADIDRIREIKRWIDNGV 61 (243)
T ss_pred CCCCCEEECHHHHHHHHHHHHHHHcCC
Confidence 448999999999999999998877666
No 381
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=64.59 E-value=30 Score=34.94 Aligned_cols=90 Identities=22% Similarity=0.232 Sum_probs=59.3
Q ss_pred ceEEEECCC--CchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEeccccccccc
Q 011964 255 RTILDIGCG--YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (474)
Q Consensus 255 ~~VLDIGCG--tG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~ 332 (474)
.+|+=+|.| -|+++..+.+.|. ...+++.|.+...++.+.+.++........ .--.....|+|+.+ ..+ .
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~-~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~---~~~~~~~aD~Viva---vPi-~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGL-VVRIIGRDRSAATLKAALELGVIDELTVAG---LAEAAAEADLVIVA---VPI-E 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCC-eEEEEeecCcHHHHHHHhhcCcccccccch---hhhhcccCCEEEEe---ccH-H
Confidence 467777766 4666666766664 568999999999999998877644332111 01123458999865 222 3
Q ss_pred cHHHHHHHHHhhcCCCcEEE
Q 011964 333 KDGILLLEVDRVLKPGGYFV 352 (474)
Q Consensus 333 d~~~~L~ei~RvLKPGG~lv 352 (474)
....+++++..-|++|-.+.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred HHHHHHHHhcccCCCCCEEE
Confidence 34578888888888887654
No 382
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=64.57 E-value=30 Score=34.72 Aligned_cols=85 Identities=19% Similarity=0.098 Sum_probs=53.1
Q ss_pred ceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEeccccccccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~ 332 (474)
.+||=+||| .|.++..+++. |. ..+..+|.++..++.|.+... . +.... ....||+|+-.-.
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~--~~v~~~~~~~~rl~~a~~~~~----i--~~~~~--~~~g~Dvvid~~G------ 209 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGG--SPPAVWETNPRRRDGATGYEV----L--DPEKD--PRRDYRAIYDASG------ 209 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCHHHHHhhhhccc----c--Chhhc--cCCCCCEEEECCC------
Confidence 567877875 45566666654 43 345667888877777654321 1 11110 2346898885421
Q ss_pred cHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 333 KDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 333 d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. ...+.++.+.|++||.+++...
T Consensus 210 ~-~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 D-PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred C-HHHHHHHHHhhhcCcEEEEEee
Confidence 1 3467888999999999998764
No 383
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=63.96 E-value=15 Score=30.70 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=46.9
Q ss_pred ECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEeccccccccccHHHHHH
Q 011964 260 IGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLL 339 (474)
Q Consensus 260 IGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d~~~~L~ 339 (474)
+-||+|..+..+++. +-+.+.++++++.+...+.....-....+|+|+++ +.....+.
T Consensus 4 ~~Cg~G~sTS~~~~k---------------i~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~-------Pqv~~~~~ 61 (96)
T cd05564 4 LVCSAGMSTSILVKK---------------MKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLG-------PQVRYMLD 61 (96)
T ss_pred EEcCCCchHHHHHHH---------------HHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEC-------hhHHHHHH
Confidence 568988877766443 45667788888777666655443223468999876 34455677
Q ss_pred HHHhhcCCCc-EEEEEeC
Q 011964 340 EVDRVLKPGG-YFVWTSP 356 (474)
Q Consensus 340 ei~RvLKPGG-~lvis~~ 356 (474)
++.+...+.+ .+.+.++
T Consensus 62 ~i~~~~~~~~~pv~~I~~ 79 (96)
T cd05564 62 EVKKKAAEYGIPVAVIDM 79 (96)
T ss_pred HHHHHhccCCCcEEEcCh
Confidence 7776554444 4444443
No 384
>PRK13699 putative methylase; Provisional
Probab=63.30 E-value=19 Score=35.03 Aligned_cols=41 Identities=17% Similarity=0.037 Sum_probs=34.8
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er 297 (474)
...|||-=||+|+.+....+.+ ....|+|+++...+.|.+|
T Consensus 164 g~~vlDpf~Gsgtt~~aa~~~~---r~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 164 NAIVLDPFAGSGSTCVAALQSG---RRYIGIELLEQYHRAGQQR 204 (227)
T ss_pred CCEEEeCCCCCCHHHHHHHHcC---CCEEEEecCHHHHHHHHHH
Confidence 3689999999999988877665 4678999999999988776
No 385
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=61.68 E-value=44 Score=33.53 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=54.1
Q ss_pred ceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC------CCCCCCeeEEEeccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL------PYPSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L------pf~d~sFDlVvss~~ 326 (474)
.+||-.|+| .|..+..+++. |. ..++.++.++...+.+++.+....+. .....+ -.+.+.||+|+-...
T Consensus 169 ~~VlI~g~g~vg~~~iqlak~~g~--~~v~~~~~~~~~~~~~~~~g~~~vi~-~~~~~~~~~i~~~~~~~~~d~vld~~g 245 (347)
T cd05278 169 STVAVIGAGPVGLCAVAGARLLGA--ARIIAVDSNPERLDLAKEAGATDIIN-PKNGDIVEQILELTGGRGVDCVIEAVG 245 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHhCCcEEEc-CCcchHHHHHHHHcCCCCCcEEEEccC
Confidence 577777765 35555556654 31 25666777777777777665322221 111110 023357999885311
Q ss_pred cccccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
. ...+.+..+.|+++|.++...
T Consensus 246 -----~--~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 246 -----F--EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred -----C--HHHHHHHHHHhhcCCEEEEEc
Confidence 1 247888899999999998764
No 386
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=61.24 E-value=63 Score=32.59 Aligned_cols=91 Identities=15% Similarity=0.122 Sum_probs=57.2
Q ss_pred ceEEEECC--CCchHHHHhhhcCCceeEEEEecCCHHHHHHHHH-cCCCcEEEeecccCC-----CCCCCCeeEEEeccc
Q 011964 255 RTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE-RGLPAMIGSFASKQL-----PYPSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGC--GtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~e-rg~~~~~~~~d~~~L-----pf~d~sFDlVvss~~ 326 (474)
.+||=.|+ |.|.++..+++.. ...++++..+++..+.+++ .|....+...+...+ ....+.+|+|+-...
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g 230 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVG 230 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCC
Confidence 67888886 5666777777652 2457777788888888876 565332221110010 011246898884311
Q ss_pred cccccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
...+.+..+.|+++|.++...
T Consensus 231 --------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 231 --------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred --------HHHHHHHHHHhccCcEEEEec
Confidence 246788999999999999765
No 387
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=60.24 E-value=7.7 Score=42.04 Aligned_cols=100 Identities=11% Similarity=0.089 Sum_probs=69.3
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc----CCCcEE--Eeec----ccCCCCCCCCeeEEE
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMI--GSFA----SKQLPYPSLSFDMLH 322 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~~~--~~~d----~~~Lpf~d~sFDlVv 322 (474)
++-+|||.=|++|.-+..++..-.....+++.|.++..++..+++ ++...+ ...| +...+-.+..||+|.
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 346899999999999999887733347889999999998866654 221111 1222 222344467899998
Q ss_pred eccccccccccHHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 323 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 323 ss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
.- .+ ..+..+|....+.++.||.+.++-..
T Consensus 189 LD----Py-Gs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 189 LD----PY-GSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred cC----CC-CCccHHHHHHHHHhhcCCEEEEEecc
Confidence 43 22 23356999999999999999997543
No 388
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=59.41 E-value=44 Score=35.71 Aligned_cols=87 Identities=13% Similarity=0.061 Sum_probs=55.7
Q ss_pred CceEEEECCCC-chHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccc
Q 011964 254 VRTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (474)
Q Consensus 254 ~~~VLDIGCGt-G~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~ 331 (474)
.++|+=+|+|. |.....+++. | ..++.+|.++.-...|++.|.... ... +.+ ..+|+|+..-.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~G---a~ViV~d~d~~R~~~A~~~G~~~~--~~~-e~v----~~aDVVI~atG----- 266 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQG---ARVIVTEVDPICALQAAMEGYEVM--TME-EAV----KEGDIFVTTTG----- 266 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECChhhHHHHHhcCCEEc--cHH-HHH----cCCCEEEECCC-----
Confidence 47899999996 4444444433 3 367778999888888887765221 111 111 24799986421
Q ss_pred ccHHHHHH-HHHhhcCCCcEEEEEeCC
Q 011964 332 QKDGILLL-EVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 332 ~d~~~~L~-ei~RvLKPGG~lvis~~~ 357 (474)
. ..++. +..+.+|+||+++.....
T Consensus 267 -~-~~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 267 -N-KDIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred -C-HHHHHHHHHhcCCCCcEEEEeCCC
Confidence 2 23455 458999999999888753
No 389
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=59.26 E-value=12 Score=37.30 Aligned_cols=123 Identities=14% Similarity=0.100 Sum_probs=72.9
Q ss_pred eEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC---CCCCCeeEEEeccc-----c
Q 011964 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP---YPSLSFDMLHCARC-----G 327 (474)
Q Consensus 256 ~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lp---f~d~sFDlVvss~~-----l 327 (474)
+++|+=||-|.+..-|.+.|+ ..+.++|+++...+.-+.+.. .....|+..+. ++. .+|+++...- .
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~--~~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ 76 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGF--EVVWAVEIDPDACETYKANFP--EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSI 76 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTE--EEEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHHHHHH-T-SEEEEE---TTTST
T ss_pred cEEEEccCccHHHHHHHhcCc--EEEEEeecCHHHHHhhhhccc--ccccccccccccccccc-cceEEEeccCCceEec
Confidence 689999999999999998874 567899999998877666543 55556766664 453 5999987521 0
Q ss_pred cc---ccccHH-HH---HHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEEe
Q 011964 328 VD---WDQKDG-IL---LLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 389 (474)
Q Consensus 328 ~~---~~~d~~-~~---L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~~ 389 (474)
.. -..+.. .+ +.++...++|.- ++.+-+..- ........+..+....+++++....
T Consensus 77 ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~--~~~ENV~~l----~~~~~~~~~~~i~~~l~~lGY~v~~ 139 (335)
T PF00145_consen 77 AGKRKGFDDPRNSLFFEFLRIVKELKPKY--FLLENVPGL----LSSKNGEVFKEILEELEELGYNVQW 139 (335)
T ss_dssp TSTHHCCCCHTTSHHHHHHHHHHHHS-SE--EEEEEEGGG----GTGGGHHHHHHHHHHHHHTTEEEEE
T ss_pred cccccccccccchhhHHHHHHHhhccceE--EEeccccee----eccccccccccccccccccceeehh
Confidence 00 012222 23 334455567844 333433321 1112224566777777888877543
No 390
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=58.93 E-value=23 Score=29.76 Aligned_cols=73 Identities=19% Similarity=0.184 Sum_probs=46.9
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEeccccccccccH
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD 334 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d~ 334 (474)
.+|| +-||+|..+..+++. +-+.+.+++++..+...+..+++-....+|+|+.+ +..
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k---------------~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~-------pqi 60 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNK---------------MNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLA-------PQV 60 (95)
T ss_pred cEEE-EECCCchhHHHHHHH---------------HHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEEC-------chH
Confidence 3455 789999777665433 56677888888877666655543223468999876 333
Q ss_pred HHHHHHHHhhcCCCcE
Q 011964 335 GILLLEVDRVLKPGGY 350 (474)
Q Consensus 335 ~~~L~ei~RvLKPGG~ 350 (474)
...+.++...+.+-|.
T Consensus 61 ~~~~~~i~~~~~~~~i 76 (95)
T TIGR00853 61 AYMLPDLKKETDKKGI 76 (95)
T ss_pred HHHHHHHHHHhhhcCC
Confidence 4456677766665443
No 391
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=58.46 E-value=1.3e+02 Score=30.00 Aligned_cols=102 Identities=18% Similarity=0.118 Sum_probs=50.5
Q ss_pred CceEEEECCCCchHHHHhh----hcCCceeEEEEecCCHH--------------------------HHHHHHHc----CC
Q 011964 254 VRTILDIGCGYGSFGAHLF----SKELLTMCIANYEASGS--------------------------QVQLTLER----GL 299 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La----~~g~~~~~v~giD~s~~--------------------------~l~~A~er----g~ 299 (474)
++.|+|+||=.|..+..++ ..+.....+.+.|.-+. .++..+++ ++
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 3689999999997665442 12222334555443211 12223332 21
Q ss_pred ---CcEEEeeccc-CCC-CCCCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 300 ---PAMIGSFASK-QLP-YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 300 ---~~~~~~~d~~-~Lp-f~d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
++.++.+... .+| .+...+-+++.- ..+-.....+|..++..|.|||+++|-+...
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD---~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERIALLHLD---CDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--EEEEEE------SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred CcccEEEECCcchhhhccCCCccEEEEEEe---ccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 3455555432 233 233445444432 1221333579999999999999999988654
No 392
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=58.04 E-value=5.7 Score=39.06 Aligned_cols=44 Identities=20% Similarity=0.196 Sum_probs=31.2
Q ss_pred CceEEEECCCCchHHHHhhhc---C----CceeEEEEecCCHHHHHHHHHc
Q 011964 254 VRTILDIGCGYGSFGAHLFSK---E----LLTMCIANYEASGSQVQLTLER 297 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~---g----~~~~~v~giD~s~~~l~~A~er 297 (474)
+-+|+|+|+|+|.++..+++. . ....+++.+|+|+.+.+.-+++
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~ 69 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKER 69 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHH
Confidence 368999999999999888654 1 1235889999999887666554
No 393
>PRK10458 DNA cytosine methylase; Provisional
Probab=56.73 E-value=1.7e+02 Score=31.95 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=34.3
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er 297 (474)
.-+++|+=||.|.+...+-..|+ ..+.++|+++.+.+.-+.+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~--~~v~a~Eid~~A~~TY~~N 129 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGG--QCVFTSEWNKHAVRTYKAN 129 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCC--EEEEEEechHHHHHHHHHH
Confidence 45899999999999999988776 4678899999887765554
No 394
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=56.43 E-value=14 Score=38.43 Aligned_cols=101 Identities=20% Similarity=0.157 Sum_probs=64.5
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHH-----------HcCCC---cEEEeecccCCCCC-CCCee
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-----------ERGLP---AMIGSFASKQLPYP-SLSFD 319 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~-----------erg~~---~~~~~~d~~~Lpf~-d~sFD 319 (474)
..|+|==.|||++....+.-| .-+.|.|++-.|+...+ +.|.. ..+..+|...-|+- ...||
T Consensus 210 divyDPFVGTGslLvsaa~FG---a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fD 286 (421)
T KOG2671|consen 210 DIVYDPFVGTGSLLVSAAHFG---AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFD 286 (421)
T ss_pred CEEecCccccCceeeehhhhc---ceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceee
Confidence 789999999999987777665 46788999887775321 12221 22345565555543 44799
Q ss_pred EEEeccc------------------------cccccc--------cHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 320 MLHCARC------------------------GVDWDQ--------KDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 320 lVvss~~------------------------l~~~~~--------d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
.|+|--- .-|.+. -....|.-..|+|.-||.+++--|..
T Consensus 287 aIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 287 AIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred EEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 9999200 011110 01245677889999999999977643
No 395
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=56.38 E-value=14 Score=25.64 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhc
Q 011964 57 QNFTMLFLKFSLIAIVFLALT 77 (474)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~ 77 (474)
..|+++.+..++|||++.|-|
T Consensus 14 r~Wi~F~l~mi~vFi~li~yt 34 (38)
T PF09125_consen 14 RGWIAFALAMILVFIALIGYT 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 468888899999999999855
No 396
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=56.20 E-value=5.1 Score=37.67 Aligned_cols=37 Identities=8% Similarity=-0.115 Sum_probs=31.0
Q ss_pred CCcccccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 91 RGHIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 91 ~~~~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
....-||||+|++.|+..|..|..+..-|. +++++..
T Consensus 28 ~~R~~~G~R~y~~~dl~~L~~I~~l~~~Gm---~i~~i~~ 64 (175)
T PRK13182 28 CEKNEYGHYIFTEEDLQLLEYVKSQIEEGQ---NMQDTQK 64 (175)
T ss_pred CCcCCCCCEEECHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 356668999999999999999998888888 7777754
No 397
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=56.19 E-value=34 Score=35.22 Aligned_cols=93 Identities=12% Similarity=0.056 Sum_probs=49.9
Q ss_pred ceEEEECCC-CchHHHHhhhcCCceeEEEEecCCHHH-HHHHHHcCCCcEEEeecccCCCCCCCCeeEEEeccccccccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQ-VQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~g~~~~~v~giD~s~~~-l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~ 332 (474)
.+||=.|+| .|.++..+++.- ...++.++.+... .+.+++.|....+...+...+.-..+.+|+|+-...
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g------ 256 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS------ 256 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC------
Confidence 567778875 344555555541 1345556655543 344555565322211110011000124888874311
Q ss_pred cHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 333 KDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 333 d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. ...+.+..+.|++||.++....
T Consensus 257 ~-~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 257 A-VHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred C-HHHHHHHHHHhcCCcEEEEeCC
Confidence 1 2367888999999999997753
No 398
>PLN02740 Alcohol dehydrogenase-like
Probab=56.11 E-value=58 Score=33.74 Aligned_cols=93 Identities=16% Similarity=0.058 Sum_probs=55.8
Q ss_pred ceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeeccc-CC-----CCCCCCeeEEEeccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK-QL-----PYPSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~-~L-----pf~d~sFDlVvss~~ 326 (474)
.+||=+|+| .|..+..+++. |. ..|+++|.+++.++.+++.|....+...+.. .+ .+..+.||+|+-.-.
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~G~--~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G 277 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARARGA--SKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAG 277 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC--CcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence 678888875 23344444544 32 2578889999999999887764333211100 00 012226898885421
Q ss_pred cccccccHHHHHHHHHhhcCCC-cEEEEEeC
Q 011964 327 GVDWDQKDGILLLEVDRVLKPG-GYFVWTSP 356 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPG-G~lvis~~ 356 (474)
. ...+.+....+++| |.+++...
T Consensus 278 ------~-~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 278 ------N-VEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred ------C-hHHHHHHHHhhhcCCCEEEEEcc
Confidence 1 24677888889997 98887654
No 399
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=55.76 E-value=58 Score=32.70 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=55.1
Q ss_pred ceEEEECCCC-chHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeec--ccCC-C-CCCCCeeEEEeccccc
Q 011964 255 RTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFA--SKQL-P-YPSLSFDMLHCARCGV 328 (474)
Q Consensus 255 ~~VLDIGCGt-G~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d--~~~L-p-f~d~sFDlVvss~~l~ 328 (474)
.+||-.|+|. |..+..+++. |. ..++.++.++...+.+.+.+....+..-+ ...+ . .+...||+|+...
T Consensus 161 ~~vlI~g~g~~g~~~~~lA~~~G~--~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~~--- 235 (343)
T cd08236 161 DTVVVIGAGTIGLLAIQWLKILGA--KRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAA--- 235 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEECC---
Confidence 5788888654 5555555554 32 12777787887877776655422221100 0010 1 1223599998541
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
.....+..+.+.|+++|.++....
T Consensus 236 ----g~~~~~~~~~~~l~~~G~~v~~g~ 259 (343)
T cd08236 236 ----GSPATIEQALALARPGGKVVLVGI 259 (343)
T ss_pred ----CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 113477888999999999987653
No 400
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=55.22 E-value=63 Score=32.60 Aligned_cols=92 Identities=15% Similarity=0.165 Sum_probs=55.0
Q ss_pred ceEEEECCCC-chHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccC-------C--CCCCCCeeEEEe
Q 011964 255 RTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-------L--PYPSLSFDMLHC 323 (474)
Q Consensus 255 ~~VLDIGCGt-G~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~-------L--pf~d~sFDlVvs 323 (474)
.+||-.|+|. |..+..+++. |. ..++.++.+++..+.+++.+....+.. .... + ......||+|+-
T Consensus 164 ~~vlI~g~g~vG~~a~~lak~~G~--~~v~~~~~~~~~~~~~~~~g~~~vi~~-~~~~~~~~~~~~~~~~~~~~~d~vld 240 (343)
T cd05285 164 DTVLVFGAGPIGLLTAAVAKAFGA--TKVVVTDIDPSRLEFAKELGATHTVNV-RTEDTPESAEKIAELLGGKGPDVVIE 240 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--cEEEEECCCHHHHHHHHHcCCcEEecc-ccccchhHHHHHHHHhCCCCCCEEEE
Confidence 5677677654 5555556655 32 126777778878777766554332211 1111 0 123445999985
Q ss_pred ccccccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 324 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 324 s~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
... . ...+.+..+.|+++|.++....
T Consensus 241 ~~g-----~--~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 241 CTG-----A--ESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred CCC-----C--HHHHHHHHHHhhcCCEEEEEcc
Confidence 421 1 2377888999999999987653
No 401
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=54.81 E-value=18 Score=38.23 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=43.0
Q ss_pred CCcEEEeecccCCC--CCCCCeeEEEeccccccccccH--HHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 299 LPAMIGSFASKQLP--YPSLSFDMLHCARCGVDWDQKD--GILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 299 ~~~~~~~~d~~~Lp--f~d~sFDlVvss~~l~~~~~d~--~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
-.+.+...++.+.- .++++||.++.+.. ..|.++. ...++++.|.++|||++++-.....
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~-~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDH-MDWMDPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecch-hhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 34555655544432 56889999998876 5564433 4789999999999999999776543
No 402
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=54.38 E-value=23 Score=36.07 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=45.3
Q ss_pred CCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeCCCCchhhhhhHHHHHHHHHHHHHHHhhCceEE
Q 011964 315 SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELV 388 (474)
Q Consensus 315 d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~~~~~~~~~e~~~~w~~~~~la~~l~W~~~ 388 (474)
.+-||+|+.+....|... .++.++++|+|.|++-..-.- ..++.+....+-..+.++++..+|+..
T Consensus 220 ~~~Fd~ifvs~s~vh~L~------p~l~~~~a~~A~LvvEtaKfm--vdLrKEq~~~F~~kv~eLA~~aG~~p~ 285 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFLK------PELFQALAPDAVLVVETAKFM--VDLRKEQLQEFVKKVKELAKAAGFKPV 285 (289)
T ss_pred cCCCCEEEEhhhhHhhcc------hHHHHHhCCCCEEEEEcchhh--eeCCHHHHHHHHHHHHHHHHHCCCccc
Confidence 357999998754333322 148889999999999774221 122445556677889999999998764
No 403
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=54.27 E-value=66 Score=33.02 Aligned_cols=95 Identities=22% Similarity=0.195 Sum_probs=59.4
Q ss_pred CceEEEEC--CCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEE--eec-ccCC-C-CCCCCeeEEEeccc
Q 011964 254 VRTILDIG--CGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIG--SFA-SKQL-P-YPSLSFDMLHCARC 326 (474)
Q Consensus 254 ~~~VLDIG--CGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~--~~d-~~~L-p-f~d~sFDlVvss~~ 326 (474)
..+||=.| .|.|.++..|++.-. ..++.+-.+++-.+.+++.|-...+. ..+ .+.+ . .....+|+|+-.-.
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG 220 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVG 220 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCC
Confidence 37888888 567788888888721 14444455665666777777543332 111 0111 1 22336999986522
Q ss_pred cccccccHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
...+.+....|+++|.++......
T Consensus 221 --------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 221 --------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred --------HHHHHHHHHHhccCCEEEEEecCC
Confidence 457778899999999999877543
No 404
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=54.00 E-value=22 Score=37.26 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=34.3
Q ss_pred CCceEEEECCCCchHHHHhhhc---C----CceeEEEEecCCHHHHHHHHHc
Q 011964 253 GVRTILDIGCGYGSFGAHLFSK---E----LLTMCIANYEASGSQVQLTLER 297 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~---g----~~~~~v~giD~s~~~l~~A~er 297 (474)
.+..++|||.|+|.++..+++. . +...++.-+++|+...+.-+++
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~ 128 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKET 128 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHH
Confidence 3468999999999999888754 1 2357889999999887654443
No 405
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=53.80 E-value=57 Score=32.89 Aligned_cols=89 Identities=19% Similarity=0.172 Sum_probs=52.4
Q ss_pred ceEEEECCCC--chHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEeccccccccc
Q 011964 255 RTILDIGCGY--GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (474)
Q Consensus 255 ~~VLDIGCGt--G~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~ 332 (474)
.+|.=||+|. +.++..+.+.+. ...++++|.+++.++.+++.+...... .+.... . ...|+|+..-.. .
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~-~~~V~~~dr~~~~~~~a~~~g~~~~~~-~~~~~~-~--~~aDvViiavp~----~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGL-AGEIVGADRSAETRARARELGLGDRVT-TSAAEA-V--KGADLVILCVPV----G 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCC-CcEEEEEECCHHHHHHHHhCCCCceec-CCHHHH-h--cCCCEEEECCCH----H
Confidence 5688889885 334555555553 236888999998888887766432211 111110 1 347888865221 1
Q ss_pred cHHHHHHHHHhhcCCCcEEE
Q 011964 333 KDGILLLEVDRVLKPGGYFV 352 (474)
Q Consensus 333 d~~~~L~ei~RvLKPGG~lv 352 (474)
....++.++...+++|..++
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEE
Confidence 12456777777788887554
No 406
>PLN02827 Alcohol dehydrogenase-like
Probab=53.72 E-value=63 Score=33.56 Aligned_cols=94 Identities=12% Similarity=-0.004 Sum_probs=55.4
Q ss_pred CceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecc-cC----C-CCCCCCeeEEEecc
Q 011964 254 VRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS-KQ----L-PYPSLSFDMLHCAR 325 (474)
Q Consensus 254 ~~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~-~~----L-pf~d~sFDlVvss~ 325 (474)
..+||=+|+| .|.++..+++. |. ..++++|.++...+.|++.|....+...+. +. + ....+.+|+|+-.-
T Consensus 194 g~~VlV~G~G~vG~~~iqlak~~G~--~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 271 (378)
T PLN02827 194 GSSVVIFGLGTVGLSVAQGAKLRGA--SQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECV 271 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--CeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECC
Confidence 3678888864 23343444443 32 347788989988999988776433211110 00 0 01122589887432
Q ss_pred ccccccccHHHHHHHHHhhcCCC-cEEEEEeC
Q 011964 326 CGVDWDQKDGILLLEVDRVLKPG-GYFVWTSP 356 (474)
Q Consensus 326 ~l~~~~~d~~~~L~ei~RvLKPG-G~lvis~~ 356 (474)
. . ...+.+..+.|++| |.+++...
T Consensus 272 G------~-~~~~~~~l~~l~~g~G~iv~~G~ 296 (378)
T PLN02827 272 G------D-TGIATTALQSCSDGWGLTVTLGV 296 (378)
T ss_pred C------C-hHHHHHHHHhhccCCCEEEEECC
Confidence 1 1 23677888899999 99987653
No 407
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=53.66 E-value=32 Score=34.02 Aligned_cols=78 Identities=17% Similarity=0.115 Sum_probs=49.2
Q ss_pred HHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEeccccccccccHHHHHHHHHhhcC
Q 011964 267 FGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLK 346 (474)
Q Consensus 267 ~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLK 346 (474)
++..|.+.+ ....|+++|.++..++.|.+.|+....... .+. + ..+|+|+..- .. .....++.++...++
T Consensus 1 ~A~aL~~~g-~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~--~--~~~Dlvvlav---P~-~~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKAG-PDVEVYGYDRDPETLEAALELGIIDEASTD-IEA--V--EDADLVVLAV---PV-SAIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHTT-TTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHH--G--GCCSEEEE-S----H-HHHHHHHHHHHCGS-
T ss_pred ChHHHHhCC-CCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhH--h--cCCCEEEEcC---CH-HHHHHHHHHhhhhcC
Confidence 355666665 246899999999999999988875544321 111 2 2369998552 22 334578999999899
Q ss_pred CCcEEEEE
Q 011964 347 PGGYFVWT 354 (474)
Q Consensus 347 PGG~lvis 354 (474)
+|..+.=.
T Consensus 71 ~~~iv~Dv 78 (258)
T PF02153_consen 71 PGAIVTDV 78 (258)
T ss_dssp TTSEEEE-
T ss_pred CCcEEEEe
Confidence 88765543
No 408
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=53.05 E-value=83 Score=31.58 Aligned_cols=90 Identities=14% Similarity=0.115 Sum_probs=56.6
Q ss_pred ceEEEECC--CCchHHHHhhhcCCcee-EEEEecCCHHHHHHHHH-cCCCcEEEeecccCC-----CCCCCCeeEEEecc
Q 011964 255 RTILDIGC--GYGSFGAHLFSKELLTM-CIANYEASGSQVQLTLE-RGLPAMIGSFASKQL-----PYPSLSFDMLHCAR 325 (474)
Q Consensus 255 ~~VLDIGC--GtG~~~~~La~~g~~~~-~v~giD~s~~~l~~A~e-rg~~~~~~~~d~~~L-----pf~d~sFDlVvss~ 325 (474)
.+||=.|+ |.|..+..+++.- .. .+++++.+++..+.+++ .|....+.. ....+ ...++.+|+|+-..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~-~~~~~~~~i~~~~~~gvd~vid~~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSELGFDAAINY-KTDNVAERLRELCPEGVDVYFDNV 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHhcCCcEEEEC-CCCCHHHHHHHHCCCCceEEEECC
Confidence 57888875 5777777777652 23 57888888888777765 565332221 11111 01224699998542
Q ss_pred ccccccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 326 ~l~~~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
. ...+.+..+.|+++|.++...
T Consensus 233 g--------~~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 233 G--------GEISDTVISQMNENSHIILCG 254 (345)
T ss_pred C--------cHHHHHHHHHhccCCEEEEEe
Confidence 1 113578889999999999764
No 409
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=53.03 E-value=69 Score=32.44 Aligned_cols=92 Identities=18% Similarity=0.167 Sum_probs=56.6
Q ss_pred ceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----C-CCCCCeeEEEeccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----P-YPSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L-----p-f~d~sFDlVvss~~ 326 (474)
.+||=.|+| .|..+..+++. |. ..++.++.+++..+.+++.+....+. .....+ . .....+|+|+-...
T Consensus 168 ~~vlI~g~g~iG~~~~~lak~~G~--~~v~~~~~~~~~~~~~~~~g~~~~v~-~~~~~~~~~i~~~~~~~~~d~vld~~g 244 (351)
T cd08285 168 DTVAVFGIGPVGLMAVAGARLRGA--GRIIAVGSRPNRVELAKEYGATDIVD-YKNGDVVEQILKLTGGKGVDAVIIAGG 244 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHcCCceEec-CCCCCHHHHHHHHhCCCCCcEEEECCC
Confidence 677777765 34455555554 32 25778888888888888777533221 111111 1 12346898885321
Q ss_pred cccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. ...+.++.+.|+++|.++....
T Consensus 245 ------~-~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 245 ------G-QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred ------C-HHHHHHHHHHhhcCCEEEEecc
Confidence 1 2478899999999999987653
No 410
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=52.90 E-value=81 Score=32.16 Aligned_cols=165 Identities=14% Similarity=0.128 Sum_probs=92.1
Q ss_pred ceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHH----HHHcCCC-cEEEeecccCCCCCC---CCeeEEEeccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL----TLERGLP-AMIGSFASKQLPYPS---LSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~----A~erg~~-~~~~~~d~~~Lpf~d---~sFDlVvss~~ 326 (474)
+.|+=+| -.-.++..++-.+. ...|+.+|+.+..+++ |.+.|++ +.....|. +-|+|+ +.||+.+.--.
T Consensus 154 K~I~vvG-DDDLtsia~aLt~m-pk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dl-r~plpe~~~~kFDvfiTDPp 230 (354)
T COG1568 154 KEIFVVG-DDDLTSIALALTGM-PKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDL-RNPLPEDLKRKFDVFITDPP 230 (354)
T ss_pred CeEEEEc-CchhhHHHHHhcCC-CceEEEEechHHHHHHHHHHHHHhCccchhheeehh-cccChHHHHhhCCeeecCch
Confidence 6789898 55555555554443 3578889999988854 4555665 55444453 345654 57998875421
Q ss_pred cccccccHHHHHHHHHhhcCCC---cEEEEEeCCCCchhhhhhHHHHHHHHHHHH-HHHhhCceEEeeecceeEEeecCC
Q 011964 327 GVDWDQKDGILLLEVDRVLKPG---GYFVWTSPLTNPQAFLRNKENQKRWNFVRD-FVENLCWELVSQQDETVVWKKTSK 402 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPG---G~lvis~~~~~~~~~~~~~e~~~~w~~~~~-la~~l~W~~~~~~~~~~iw~k~~~ 402 (474)
... .....++..=...||.- |+|.++... .....|..++. +...+++-..- ..+-++.-.+
T Consensus 231 -eTi-~alk~FlgRGI~tLkg~~~aGyfgiT~re----------ssidkW~eiQr~lIn~~gvVITd---iirnFN~Y~n 295 (354)
T COG1568 231 -ETI-KALKLFLGRGIATLKGEGCAGYFGITRRE----------SSIDKWREIQRILINEMGVVITD---IIRNFNEYVN 295 (354)
T ss_pred -hhH-HHHHHHHhccHHHhcCCCccceEeeeecc----------ccHHHHHHHHHHHHHhcCeeeHh---hhhhhhcccc
Confidence 111 22234555545566665 888887642 23466888888 67777754322 1111222111
Q ss_pred CcccccCCCCCCCCcccCCCCCCCCcccCCCCcccccC
Q 011964 403 ASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTR 440 (474)
Q Consensus 403 ~~C~~~R~~~~~p~lc~~~~~~d~~wY~~l~~ci~~~~ 440 (474)
-+-+.++....++|+-. -++..||......|--..
T Consensus 296 wey~~et~a~~l~pvKk---lpe~iwy~s~~frIetlk 330 (354)
T COG1568 296 WEYIEETRAWKLAPVKK---LPEDIWYKSYMFRIETLK 330 (354)
T ss_pred cccchhhhhhhhccccc---Cchhhhhhhheeeeeeec
Confidence 12223333333444443 235569988777776554
No 411
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=52.90 E-value=85 Score=32.31 Aligned_cols=93 Identities=12% Similarity=0.028 Sum_probs=56.7
Q ss_pred ceEEEECCCC-chHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeec-ccC----C-CCCCCCeeEEEeccc
Q 011964 255 RTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFA-SKQ----L-PYPSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGCGt-G~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d-~~~----L-pf~d~sFDlVvss~~ 326 (474)
.+||=+|+|. |..+..+++. |. ..++.+|.+++.++.+++.|....+...+ ... + ....+.+|+|+-.-.
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~G~--~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G 264 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMAKA--SRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECIG 264 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 6788888752 4455555554 32 25788899999999998877643332111 000 0 011235888874311
Q ss_pred cccccccHHHHHHHHHhhcCCC-cEEEEEeC
Q 011964 327 GVDWDQKDGILLLEVDRVLKPG-GYFVWTSP 356 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPG-G~lvis~~ 356 (474)
. ...+.+..+.+++| |.+++...
T Consensus 265 ------~-~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 265 ------N-VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred ------C-HHHHHHHHHHhhcCCCeEEEEec
Confidence 1 34678888899996 99887764
No 412
>cd00592 HTH_MerR-like Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=51.83 E-value=7 Score=32.60 Aligned_cols=35 Identities=23% Similarity=0.164 Sum_probs=28.1
Q ss_pred cccccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 93 HIYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 93 ~~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
...+|||+|++.|+.++..+..|+..|. ++++...
T Consensus 30 ~~~~g~r~y~~~dv~~l~~i~~l~~~g~---~~~~i~~ 64 (100)
T cd00592 30 RSENGYRLYSEEDLERLRLIRRLRELGL---SLKEIRE 64 (100)
T ss_pred cCCCCCcccCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 4457999999999999999999988666 5555443
No 413
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=51.16 E-value=95 Score=31.26 Aligned_cols=92 Identities=14% Similarity=0.194 Sum_probs=53.1
Q ss_pred ceEEEECCCC-chHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC-----CCCCCeeEEEecccc
Q 011964 255 RTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP-----YPSLSFDMLHCARCG 327 (474)
Q Consensus 255 ~~VLDIGCGt-G~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lp-----f~d~sFDlVvss~~l 327 (474)
.+||-.|+|. |..+..+++. |. ..++.++.++.-...+.+.+....+. ....... .+.+.+|+|+....
T Consensus 165 ~~vlV~g~g~vg~~~~~la~~~G~--~~v~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~vd~vld~~g- 240 (341)
T cd05281 165 KSVLITGCGPIGLMAIAVAKAAGA--SLVIASDPNPYRLELAKKMGADVVIN-PREEDVVEVKSVTDGTGVDVVLEMSG- 240 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--cEEEEECCCHHHHHHHHHhCcceeeC-cccccHHHHHHHcCCCCCCEEEECCC-
Confidence 5666677643 4455555554 32 14566677777777777666532221 1111110 22346899985421
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
....+.++.+.|+++|.++....
T Consensus 241 ------~~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 241 ------NPKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred ------CHHHHHHHHHHhccCCEEEEEcc
Confidence 13467888999999999987654
No 414
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=50.44 E-value=1.2e+02 Score=29.94 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=53.6
Q ss_pred ceEEEECCCCchHHHHh---hhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEeccccccc
Q 011964 255 RTILDIGCGYGSFGAHL---FSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~L---a~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~ 330 (474)
.+||=.|+ |..+..+ ++. | ..++.++.+++..+.+++.+....+.. ... ...+.+|+|+-...
T Consensus 157 ~~vlV~g~--g~vg~~~~q~a~~~G---~~vi~~~~~~~~~~~~~~~g~~~~~~~---~~~-~~~~~~d~vid~~g---- 223 (319)
T cd08242 157 DKVAVLGD--GKLGLLIAQVLALTG---PDVVLVGRHSEKLALARRLGVETVLPD---EAE-SEGGGFDVVVEATG---- 223 (319)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcC---CeEEEEcCCHHHHHHHHHcCCcEEeCc---ccc-ccCCCCCEEEECCC----
Confidence 57777765 4555444 333 4 357778888888888887665432211 111 24456999985421
Q ss_pred cccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 331 DQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 331 ~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
....+..+.+.|+++|.++...
T Consensus 224 ---~~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 224 ---SPSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred ---ChHHHHHHHHHhhcCCEEEEEc
Confidence 1346778888999999999743
No 415
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=49.96 E-value=49 Score=34.46 Aligned_cols=92 Identities=14% Similarity=0.098 Sum_probs=51.0
Q ss_pred ceEEEECCC-CchHHHHhhhcCCceeEEEEecCCHHH-HHHHHHcCCCcEEEeecccCCC-CCCCCeeEEEecccccccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQ-VQLTLERGLPAMIGSFASKQLP-YPSLSFDMLHCARCGVDWD 331 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~g~~~~~v~giD~s~~~-l~~A~erg~~~~~~~~d~~~Lp-f~d~sFDlVvss~~l~~~~ 331 (474)
.+||=.|+| .|..+..+++.- ...++.++.+.+. .+.+++.|....+..-+.+.+. .. +.+|+|+-.-.
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~--Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~-~~~D~vid~~G----- 251 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAF--GLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAV-GTMDFIIDTVS----- 251 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHc--CCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhh-CCCcEEEECCC-----
Confidence 677777874 344445555541 2356677766443 5666666653322111100110 11 24888874311
Q ss_pred ccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 332 QKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 332 ~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
....+.+..+.|++||.++....
T Consensus 252 --~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 252 --AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred --cHHHHHHHHHhhcCCCEEEEEcc
Confidence 12367888899999999997754
No 416
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=49.87 E-value=1.2e+02 Score=30.80 Aligned_cols=92 Identities=18% Similarity=0.179 Sum_probs=53.6
Q ss_pred ceEEEECCC-CchHHHHhhhcCCcee-EEEEecCCHHHHHHHHHcCCCcEEEeecccCC--------C-CCCCCeeEEEe
Q 011964 255 RTILDIGCG-YGSFGAHLFSKELLTM-CIANYEASGSQVQLTLERGLPAMIGSFASKQL--------P-YPSLSFDMLHC 323 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~g~~~~-~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L--------p-f~d~sFDlVvs 323 (474)
.+||=.|+| .|..+..+++.. .. .+++++.+++..+.+++.+....+. ...... . .....+|+|+-
T Consensus 179 ~~vlI~g~g~vG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~~g~~~vi~-~~~~~~~~~~~~i~~~~~~~~~d~vid 255 (361)
T cd08231 179 DTVVVQGAGPLGLYAVAAAKLA--GARRVIVIDGSPERLELAREFGADATID-IDELPDPQRRAIVRDITGGRGADVVIE 255 (361)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHHcCCCeEEc-CcccccHHHHHHHHHHhCCCCCcEEEE
Confidence 567777753 233334444441 23 6778888888888877666533221 111100 0 12246899884
Q ss_pred ccccccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 324 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 324 s~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
... . ...+.+..+.|+++|.++....
T Consensus 256 ~~g-----~--~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 256 ASG-----H--PAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred CCC-----C--hHHHHHHHHHhccCCEEEEEcC
Confidence 311 1 2367788899999999997754
No 417
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=49.74 E-value=9.3 Score=27.09 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=16.0
Q ss_pred ccccceechhhhhhHHHhh
Q 011964 94 IYHGYRRLQEQLVSDLWDI 112 (474)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~ 112 (474)
.-+|+|+|++.|+.+++.|
T Consensus 31 ~~~~~~~y~~~~v~~l~~i 49 (49)
T cd04761 31 TEGGYRLYSDADLERLRLI 49 (49)
T ss_pred CCCCCEEeCHHHHHHhhhC
Confidence 3469999999999998765
No 418
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=49.74 E-value=44 Score=28.63 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=48.6
Q ss_pred eEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCC--CCCCeeEEEecccccccccc
Q 011964 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPY--PSLSFDMLHCARCGVDWDQK 333 (474)
Q Consensus 256 ~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf--~d~sFDlVvss~~l~~~~~d 333 (474)
+|| +-||.|..+..+++. +-+.++++|+++.+...+...++- ....||+|++. ++
T Consensus 3 kIL-lvCg~G~STSlla~k---------------~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~-------PQ 59 (104)
T PRK09590 3 KAL-IICAAGMSSSMMAKK---------------TTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVS-------PQ 59 (104)
T ss_pred EEE-EECCCchHHHHHHHH---------------HHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEC-------hH
Confidence 344 679999877766554 445677888887776555544432 23468999876 34
Q ss_pred HHHHHHHHHhhcCCCcEEEE
Q 011964 334 DGILLLEVDRVLKPGGYFVW 353 (474)
Q Consensus 334 ~~~~L~ei~RvLKPGG~lvi 353 (474)
....+.++...+.+.|.-+.
T Consensus 60 i~~~~~~i~~~~~~~~ipv~ 79 (104)
T PRK09590 60 TKMYFKQFEEAGAKVGKPVV 79 (104)
T ss_pred HHHHHHHHHHHhhhcCCCEE
Confidence 45567778888766555333
No 419
>cd04778 HTH_MerR-like_sg2 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 2). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=49.70 E-value=7.8 Score=37.72 Aligned_cols=34 Identities=12% Similarity=0.012 Sum_probs=28.3
Q ss_pred ccccceechhhhhhHHHhhhhhccCCCCcCccccccc
Q 011964 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (474)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (474)
.-+|||.|++.++.+|+.|..|+.-|. ++++...
T Consensus 32 ~~~~~r~Y~~~~v~rL~~I~~l~~~G~---~L~~I~~ 65 (219)
T cd04778 32 RRGRVAIYNDSHLARLRLINQLLERGY---TLAHIAE 65 (219)
T ss_pred cCCCCcccCHHHHHHHHHHHHHHHCCC---CHHHHHH
Confidence 347999999999999999999997777 5666554
No 420
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=48.63 E-value=1.8e+02 Score=31.70 Aligned_cols=102 Identities=14% Similarity=0.103 Sum_probs=60.6
Q ss_pred ceEEEECCCCchHHHHhhhc---CCceeEEEEecCCHHHHHHHHHc----CCC---cEEEeecccCC-CC-CCCCeeEEE
Q 011964 255 RTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQL-PY-PSLSFDMLH 322 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~---g~~~~~v~giD~s~~~l~~A~er----g~~---~~~~~~d~~~L-pf-~d~sFDlVv 322 (474)
..|.|.-||+|.+.....+. +-....+++.+....+...++.+ ++. ......+...- .+ ....||.|+
T Consensus 219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~v~ 298 (501)
T TIGR00497 219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEVVV 298 (501)
T ss_pred CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCEEe
Confidence 57999999999988654321 21235689999999888877653 221 11212222111 12 234688887
Q ss_pred ecccc--------------------ccc----cccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 323 CARCG--------------------VDW----DQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 323 ss~~l--------------------~~~----~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
++--. .|+ ....-.++..+..+|++||...+.-+
T Consensus 299 ~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~ 356 (501)
T TIGR00497 299 SNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCF 356 (501)
T ss_pred ecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEec
Confidence 65210 011 01123678888999999998666554
No 421
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=48.54 E-value=44 Score=28.04 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=54.4
Q ss_pred CCCchHHHHhhhcCC-ceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC----CCCCCeeEEEeccccccccccHHH
Q 011964 262 CGYGSFGAHLFSKEL-LTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP----YPSLSFDMLHCARCGVDWDQKDGI 336 (474)
Q Consensus 262 CGtG~~~~~La~~g~-~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lp----f~d~sFDlVvss~~l~~~~~d~~~ 336 (474)
||.|.++..+++.-. ....++.+|.+++.++.+++.+.. +..+|..+.. ..-...|.|++..- .+....
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~--~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~ 77 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVE--VIYGDATDPEVLERAGIEKADAVVILTD----DDEENL 77 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSE--EEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccc--cccccchhhhHHhhcCccccCEEEEccC----CHHHHH
Confidence 566677777765410 114789999999999999988854 4444543321 12246888876532 122224
Q ss_pred HHHHHHhhcCCCcEEEEEeC
Q 011964 337 LLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 337 ~L~ei~RvLKPGG~lvis~~ 356 (474)
.+....|-+-|...++....
T Consensus 78 ~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 78 LIALLARELNPDIRIIARVN 97 (116)
T ss_dssp HHHHHHHHHTTTSEEEEEES
T ss_pred HHHHHHHHHCCCCeEEEEEC
Confidence 55667777888888887654
No 422
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=47.93 E-value=1.6e+02 Score=29.23 Aligned_cols=87 Identities=21% Similarity=0.208 Sum_probs=51.1
Q ss_pred ceEEEECCCC-chHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccccc
Q 011964 255 RTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (474)
Q Consensus 255 ~~VLDIGCGt-G~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d 333 (474)
.+||=.|||. |..+..+++.. ...++.++.++...+.+++.+....+. .... +...+|+++....
T Consensus 169 ~~vlV~g~g~vg~~~~~la~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~---~~~~--~~~~vD~vi~~~~------- 234 (329)
T cd08298 169 QRLGLYGFGASAHLALQIARYQ--GAEVFAFTRSGEHQELARELGADWAGD---SDDL--PPEPLDAAIIFAP------- 234 (329)
T ss_pred CEEEEECCcHHHHHHHHHHHHC--CCeEEEEcCChHHHHHHHHhCCcEEec---cCcc--CCCcccEEEEcCC-------
Confidence 4566576542 22223334431 246777777777888887666432221 1111 3346888764211
Q ss_pred HHHHHHHHHhhcCCCcEEEEEe
Q 011964 334 DGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 334 ~~~~L~ei~RvLKPGG~lvis~ 355 (474)
....+.++.+.|+++|.++...
T Consensus 235 ~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 235 VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred cHHHHHHHHHHhhcCCEEEEEc
Confidence 1247889999999999999765
No 423
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=47.73 E-value=1.2e+02 Score=30.38 Aligned_cols=92 Identities=12% Similarity=0.126 Sum_probs=53.7
Q ss_pred ceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC------CCCCCCeeEEEeccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL------PYPSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L------pf~d~sFDlVvss~~ 326 (474)
.+||-.|+| .|..+..+++. |. ..++.++.++...+.+++.+....+. .....+ ......||+|+-...
T Consensus 163 ~~vlI~~~g~vg~~a~~la~~~G~--~~v~~~~~~~~~~~~~~~~g~~~~v~-~~~~~~~~~l~~~~~~~~~d~vld~~g 239 (340)
T TIGR00692 163 KSVLVTGAGPIGLMAIAVAKASGA--YPVIVSDPNEYRLELAKKMGATYVVN-PFKEDVVKEVADLTDGEGVDVFLEMSG 239 (340)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--cEEEEECCCHHHHHHHHHhCCcEEEc-ccccCHHHHHHHhcCCCCCCEEEECCC
Confidence 456656664 34444545554 32 12666677887777777766532221 111110 123356899985411
Q ss_pred cccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. ...+.++.+.|+++|.++....
T Consensus 240 -----~--~~~~~~~~~~l~~~g~~v~~g~ 262 (340)
T TIGR00692 240 -----A--PKALEQGLQAVTPGGRVSLLGL 262 (340)
T ss_pred -----C--HHHHHHHHHhhcCCCEEEEEcc
Confidence 1 3468889999999999987764
No 424
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=47.60 E-value=1.1e+02 Score=31.31 Aligned_cols=93 Identities=18% Similarity=0.076 Sum_probs=54.8
Q ss_pred ceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecc-c----CC-CCCCCCeeEEEeccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS-K----QL-PYPSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~-~----~L-pf~d~sFDlVvss~~ 326 (474)
.+||=+|+| .|..+..+++. |. ..+++++.++...+.+++.+....+...+. . .+ ....+.+|+|+-.-.
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~G~--~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~g 263 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIAGA--SRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECTG 263 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECCC
Confidence 677777864 23344444544 32 257888999988888887765332211110 0 00 011246899884311
Q ss_pred cccccccHHHHHHHHHhhcCCC-cEEEEEeC
Q 011964 327 GVDWDQKDGILLLEVDRVLKPG-GYFVWTSP 356 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPG-G~lvis~~ 356 (474)
. ...+.+..+.|+++ |.+++...
T Consensus 264 ------~-~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 264 ------N-ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred ------C-hHHHHHHHHhcccCCCEEEEEcC
Confidence 1 24778888999886 99988764
No 425
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=47.10 E-value=1.2e+02 Score=31.08 Aligned_cols=93 Identities=12% Similarity=0.034 Sum_probs=55.8
Q ss_pred ceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeeccc-CC-----CCCCCCeeEEEeccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK-QL-----PYPSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~-~L-----pf~d~sFDlVvss~~ 326 (474)
.+||=+|+| .|..+..+++. |. ..+++++.+++.++.+++.+....+...+.. .+ ...++.+|+|+-.-.
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~G~--~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g 265 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAAGA--SRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECIG 265 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECCC
Confidence 678878864 33344445544 32 2578889999999988877754333211100 00 012236898885311
Q ss_pred cccccccHHHHHHHHHhhcCCC-cEEEEEeC
Q 011964 327 GVDWDQKDGILLLEVDRVLKPG-GYFVWTSP 356 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPG-G~lvis~~ 356 (474)
. ...+.+..+.|+++ |.+++...
T Consensus 266 ------~-~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 266 ------N-VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred ------C-hHHHHHHHHhhccCCCeEEEEcc
Confidence 1 24778888999997 99987664
No 426
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=47.01 E-value=1e+02 Score=31.54 Aligned_cols=92 Identities=15% Similarity=0.114 Sum_probs=55.1
Q ss_pred ceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccC----C-C-CCCCCeeEEEeccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ----L-P-YPSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~----L-p-f~d~sFDlVvss~~ 326 (474)
.+||-.|+| .|..+..+++. |. ..++.++.++...+.+++.+....+. ..... + . .+.+.||+|+....
T Consensus 184 ~~vLI~g~g~vG~a~i~lak~~G~--~~Vi~~~~~~~~~~~~~~~g~~~vv~-~~~~~~~~~l~~~~~~~~vd~vld~~~ 260 (363)
T cd08279 184 DTVAVIGCGGVGLNAIQGARIAGA--SRIIAVDPVPEKLELARRFGATHTVN-ASEDDAVEAVRDLTDGRGADYAFEAVG 260 (363)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CcEEEEcCCHHHHHHHHHhCCeEEeC-CCCccHHHHHHHHcCCCCCCEEEEcCC
Confidence 567777774 45555555554 32 23777788888777777666522221 11000 1 1 12456998885421
Q ss_pred cccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
....+.++.+.|+++|.++....
T Consensus 261 -------~~~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 261 -------RAATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred -------ChHHHHHHHHHhhcCCeEEEEec
Confidence 12467889999999999987654
No 427
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=46.81 E-value=73 Score=32.25 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=54.9
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEeccccccccc
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~ 332 (474)
..+...|+|+-+|.++-.|.+++ +.|+++|... |.+.....| .+.....|.....-.....|-.+|-.+ +
T Consensus 211 ~~M~avDLGAcPGGWTyqLVkr~---m~V~aVDng~-ma~sL~dtg-~v~h~r~DGfk~~P~r~~idWmVCDmV-----E 280 (358)
T COG2933 211 PGMWAVDLGACPGGWTYQLVKRN---MRVYAVDNGP-MAQSLMDTG-QVTHLREDGFKFRPTRSNIDWMVCDMV-----E 280 (358)
T ss_pred CCceeeecccCCCccchhhhhcc---eEEEEeccch-hhhhhhccc-ceeeeeccCcccccCCCCCceEEeehh-----c
Confidence 34789999999999999999986 5789999655 544443333 233333343333223456888887644 5
Q ss_pred cHHHHHHHHHhhcCCC
Q 011964 333 KDGILLLEVDRVLKPG 348 (474)
Q Consensus 333 d~~~~L~ei~RvLKPG 348 (474)
.+..+-.-|...|..|
T Consensus 281 kP~rv~~li~~Wl~nG 296 (358)
T COG2933 281 KPARVAALIAKWLVNG 296 (358)
T ss_pred CcHHHHHHHHHHHHcc
Confidence 5555555566666544
No 428
>PRK14756 hypothetical protein; Provisional
Probab=45.81 E-value=25 Score=22.91 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=18.9
Q ss_pred chhHHHHHHHHHHHHHHHHhhcC
Q 011964 56 RQNFTMLFLKFSLIAIVFLALTG 78 (474)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~ 78 (474)
-+|+-++-+++.|++|+++++|.
T Consensus 4 dLK~SL~tTvvaL~~Iva~~~ta 26 (29)
T PRK14756 4 DLKFSLVTTIIVLGLIVAVGLTA 26 (29)
T ss_pred chhhhHHHHHHHHHHHHHHHHHH
Confidence 36777888899999999998874
No 429
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=41.89 E-value=2e+02 Score=27.83 Aligned_cols=92 Identities=18% Similarity=0.134 Sum_probs=54.8
Q ss_pred CceEEEECC--CCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----C-CCCCCeeEEEecc
Q 011964 254 VRTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----P-YPSLSFDMLHCAR 325 (474)
Q Consensus 254 ~~~VLDIGC--GtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L-----p-f~d~sFDlVvss~ 325 (474)
..+||-.|| +.|..+..+++.. ...+..++.+....+.+++.+....+.... ... . .....+|+++...
T Consensus 140 ~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~i~~~~~~~~~d~v~~~~ 216 (323)
T cd08241 140 GETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSEEKLALARALGADHVIDYRD-PDLRERVKALTGGRGVDVVYDPV 216 (323)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHcCCceeeecCC-ccHHHHHHHHcCCCCcEEEEECc
Confidence 368999998 3455555555541 245777788888888887666533222111 011 0 1234689888542
Q ss_pred ccccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 326 ~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. ...+..+.+.++++|.++....
T Consensus 217 g--------~~~~~~~~~~~~~~g~~v~~~~ 239 (323)
T cd08241 217 G--------GDVFEASLRSLAWGGRLLVIGF 239 (323)
T ss_pred c--------HHHHHHHHHhhccCCEEEEEcc
Confidence 2 1245667888999999887653
No 430
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=41.25 E-value=1.8 Score=35.53 Aligned_cols=21 Identities=29% Similarity=0.581 Sum_probs=7.3
Q ss_pred CCCCchhHHHHHHHHHHHHHH
Q 011964 52 TPRSRQNFTMLFLKFSLIAIV 72 (474)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~ 72 (474)
.||.+.+|+.|++++.|||+|
T Consensus 60 r~rkKrrwlwLlikl~lV~av 80 (81)
T PF14812_consen 60 RPRKKRRWLWLLIKLFLVFAV 80 (81)
T ss_dssp -----------TTTTHCCHCC
T ss_pred CccccchhHHHHHHHHHHhee
Confidence 389999999999888777654
No 431
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=41.00 E-value=1.4e+02 Score=31.30 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=55.2
Q ss_pred ceEEEEC-C-CCchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHc--------CCCcEEEeecc-cCC-----C-CCCC
Q 011964 255 RTILDIG-C-GYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER--------GLPAMIGSFAS-KQL-----P-YPSL 316 (474)
Q Consensus 255 ~~VLDIG-C-GtG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~er--------g~~~~~~~~d~-~~L-----p-f~d~ 316 (474)
.+||=+| + +.|..+..+++. |.-...++++|.++..++.+++. |....+..... ..+ . ....
T Consensus 177 ~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~ 256 (410)
T cd08238 177 GNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGGQ 256 (410)
T ss_pred CEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCCC
Confidence 5788786 3 367777777765 22123688899999999988875 32212221100 111 0 1233
Q ss_pred CeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEE
Q 011964 317 SFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWT 354 (474)
Q Consensus 317 sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis 354 (474)
.||+|+-... . ...+.+..+.++++|.+++.
T Consensus 257 g~D~vid~~g------~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 257 GFDDVFVFVP------V-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCEEEEcCC------C-HHHHHHHHHHhccCCeEEEE
Confidence 6888875311 1 34778889999988866553
No 432
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=40.95 E-value=1.9e+02 Score=28.10 Aligned_cols=88 Identities=20% Similarity=0.256 Sum_probs=55.6
Q ss_pred CceEEEECC--CCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccc
Q 011964 254 VRTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (474)
Q Consensus 254 ~~~VLDIGC--GtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~ 331 (474)
..+||=.|+ +.|..+..+++.. ...+..++.+++..+.+++.+....+.. ... +.++.+|+++-...
T Consensus 133 ~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~~--~~~--~~~~~~d~vl~~~g----- 201 (305)
T cd08270 133 GRRVLVTGASGGVGRFAVQLAALA--GAHVVAVVGSPARAEGLRELGAAEVVVG--GSE--LSGAPVDLVVDSVG----- 201 (305)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCcEEEec--ccc--ccCCCceEEEECCC-----
Confidence 367777777 4555555555542 2457777778888888877665422211 111 22346899985421
Q ss_pred ccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 332 QKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 332 ~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
...+.+..+.|+++|.++...
T Consensus 202 ---~~~~~~~~~~l~~~G~~v~~g 222 (305)
T cd08270 202 ---GPQLARALELLAPGGTVVSVG 222 (305)
T ss_pred ---cHHHHHHHHHhcCCCEEEEEe
Confidence 125788999999999999765
No 433
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=40.20 E-value=2.1e+02 Score=27.82 Aligned_cols=89 Identities=20% Similarity=0.150 Sum_probs=56.7
Q ss_pred ceEEEECC--CCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----CCCCCCeeEEEecccc
Q 011964 255 RTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARCG 327 (474)
Q Consensus 255 ~~VLDIGC--GtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L-----pf~d~sFDlVvss~~l 327 (474)
.+||=.|+ +.|..+..+++.. ...++.+..+++..+.+.+.+....+.. ...+ .+ .+.+|+|+....
T Consensus 144 ~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~i~~~-~~~~d~vl~~~~- 217 (320)
T cd08243 144 DTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSPERAALLKELGADEVVID--DGAIAEQLRAA-PGGFDKVLELVG- 217 (320)
T ss_pred CEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhcCCcEEEec--CccHHHHHHHh-CCCceEEEECCC-
Confidence 67777775 4666666666652 2457777777877888877665332211 1111 12 456999985421
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
...+.+..+.|+++|.++....
T Consensus 218 -------~~~~~~~~~~l~~~g~~v~~g~ 239 (320)
T cd08243 218 -------TATLKDSLRHLRPGGIVCMTGL 239 (320)
T ss_pred -------hHHHHHHHHHhccCCEEEEEcc
Confidence 2367888999999999987653
No 434
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=39.46 E-value=1.5e+02 Score=29.87 Aligned_cols=92 Identities=18% Similarity=0.107 Sum_probs=54.0
Q ss_pred ceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----C-CCCCCeeEEEeccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----P-YPSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L-----p-f~d~sFDlVvss~~ 326 (474)
.+||=.|+| .|..+..+++. |. ..++.++.+++..+.+++.+....+...+ .++ . ...+.+|+|+-...
T Consensus 174 ~~vlI~g~g~vG~~a~q~a~~~G~--~~v~~~~~~~~~~~~~~~~ga~~~i~~~~-~~~~~~l~~~~~~~~~d~vid~~g 250 (351)
T cd08233 174 DTALVLGAGPIGLLTILALKAAGA--SKIIVSEPSEARRELAEELGATIVLDPTE-VDVVAEVRKLTGGGGVDVSFDCAG 250 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHhCCCEEECCCc-cCHHHHHHHHhCCCCCCEEEECCC
Confidence 567777753 33344444444 32 25777888888888887766533221111 110 0 12334899985321
Q ss_pred cccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
....+.++.+.|+++|.++....
T Consensus 251 -------~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 251 -------VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred -------CHHHHHHHHHhccCCCEEEEEcc
Confidence 12367888999999999988664
No 435
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=39.03 E-value=1.5e+02 Score=30.27 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=56.0
Q ss_pred ceEEEECCCC-chHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----CCCCCCeeEEEecccc
Q 011964 255 RTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARCG 327 (474)
Q Consensus 255 ~~VLDIGCGt-G~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L-----pf~d~sFDlVvss~~l 327 (474)
.+||=.|+|. |..+..+++. |. ..+++++.++...+.+++.+....+. .....+ .+....||+|+-...
T Consensus 188 ~~vlI~g~g~vG~~~~~la~~~G~--~~v~~~~~~~~k~~~~~~~g~~~~i~-~~~~~~~~~v~~~~~~~~d~vld~~g- 263 (365)
T cd08278 188 SSIAVFGAGAVGLAAVMAAKIAGC--TTIIAVDIVDSRLELAKELGATHVIN-PKEEDLVAAIREITGGGVDYALDTTG- 263 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHcCCcEEec-CCCcCHHHHHHHHhCCCCcEEEECCC-
Confidence 6777777643 4455555554 32 25788899988888887766532221 111110 011346898884311
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. ...+.++.+.|+++|.++....
T Consensus 264 ----~--~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 264 ----V--PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred ----C--cHHHHHHHHHhccCCEEEEeCc
Confidence 1 2367889999999999998664
No 436
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=39.01 E-value=1.3e+02 Score=30.26 Aligned_cols=92 Identities=18% Similarity=0.216 Sum_probs=51.9
Q ss_pred ceEEEECCC-CchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-CCCCCCeeEEEeccccccccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-PYPSLSFDMLHCARCGVDWDQ 332 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L-pf~d~sFDlVvss~~l~~~~~ 332 (474)
.+||=.||| .|..+..+++.. ...++.++.+++..+.+++.+....+...+ ... .-..+.+|+|+.... .
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~-~~~~~~~~~~~d~v~~~~g-----~ 242 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKAL--GAEVTAFSRSPSKKEDALKLGADEFIATKD-PEAMKKAAGSLDLIIDTVS-----A 242 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHcCCcEEecCcc-hhhhhhccCCceEEEECCC-----C
Confidence 455556653 333344444441 246777888888888887666432221111 111 011356898884321 1
Q ss_pred cHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 333 KDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 333 d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
...+.++.+.|+++|.++....
T Consensus 243 --~~~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 243 --SHDLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred --cchHHHHHHHhcCCCEEEEEec
Confidence 1247788899999999997654
No 437
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=38.73 E-value=47 Score=29.30 Aligned_cols=39 Identities=18% Similarity=0.159 Sum_probs=22.5
Q ss_pred EECCCCc--hHHHHhh-hcCCceeEEEEecCCHHHHHHHHHc
Q 011964 259 DIGCGYG--SFGAHLF-SKELLTMCIANYEASGSQVQLTLER 297 (474)
Q Consensus 259 DIGCGtG--~~~~~La-~~g~~~~~v~giD~s~~~l~~A~er 297 (474)
|||+..| .....+. +.......+.++|+++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6555553 2222456789999999987665544
No 438
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=38.59 E-value=2.1e+02 Score=28.73 Aligned_cols=93 Identities=14% Similarity=0.122 Sum_probs=55.5
Q ss_pred ceEEEECCCC-chHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----C-CCCCCeeEEEeccc
Q 011964 255 RTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----P-YPSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGCGt-G~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L-----p-f~d~sFDlVvss~~ 326 (474)
.+||=.|+|. |..+..+++. |. ..++.++.++...+.+++.+....+. .....+ . ...+.+|+|+....
T Consensus 165 ~~vlV~~~g~vg~~~~~la~~~G~--~~v~~~~~~~~~~~~~~~lg~~~~~~-~~~~~~~~~~~~~~~~~~~d~v~d~~g 241 (341)
T PRK05396 165 EDVLITGAGPIGIMAAAVAKHVGA--RHVVITDVNEYRLELARKMGATRAVN-VAKEDLRDVMAELGMTEGFDVGLEMSG 241 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHhCCcEEec-CccccHHHHHHHhcCCCCCCEEEECCC
Confidence 5666677653 4455555554 32 24566678888788777776533221 111110 0 12346898885311
Q ss_pred cccccccHHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
....+.++.+.|+++|.++.....
T Consensus 242 -------~~~~~~~~~~~l~~~G~~v~~g~~ 265 (341)
T PRK05396 242 -------APSAFRQMLDNMNHGGRIAMLGIP 265 (341)
T ss_pred -------CHHHHHHHHHHHhcCCEEEEEecC
Confidence 134788889999999999998753
No 439
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=38.29 E-value=1.5e+02 Score=29.50 Aligned_cols=84 Identities=20% Similarity=0.095 Sum_probs=50.0
Q ss_pred eEEEECCCC--chHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccccc
Q 011964 256 TILDIGCGY--GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (474)
Q Consensus 256 ~VLDIGCGt--G~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d 333 (474)
+|.=||+|. |.++..|.+.| ..|+++|.+++.++.+.+.+...... .+.+ . -...|+|+..-- . ..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g---~~V~~~d~~~~~~~~a~~~g~~~~~~-~~~~---~-~~~aDlVilavp---~-~~ 69 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLG---HTVYGVSRRESTCERAIERGLVDEAS-TDLS---L-LKDCDLVILALP---I-GL 69 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHCCCccccc-CCHh---H-hcCCCEEEEcCC---H-HH
Confidence 355578774 55666666665 36889999999888887766421110 0111 1 135788886521 1 22
Q ss_pred HHHHHHHHHhhcCCCcEE
Q 011964 334 DGILLLEVDRVLKPGGYF 351 (474)
Q Consensus 334 ~~~~L~ei~RvLKPGG~l 351 (474)
...++.++...++|+-.+
T Consensus 70 ~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 70 LLPPSEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHHHHHhCCCCcEE
Confidence 245677888888776433
No 440
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=37.71 E-value=2e+02 Score=30.40 Aligned_cols=91 Identities=12% Similarity=0.107 Sum_probs=54.3
Q ss_pred eEEEECCCCchHHHHhhhcCCceeEEEEecCCHH---HHHHHHHcCCCcE-EEeecccCCCCCCCCeeEEEecccccccc
Q 011964 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGS---QVQLTLERGLPAM-IGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (474)
Q Consensus 256 ~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~---~l~~A~erg~~~~-~~~~d~~~Lpf~d~sFDlVvss~~l~~~~ 331 (474)
+||=|+=..|.++..|+..++ ..+ .|.--. ..+.+..++++.. +...+. .-+++. .+|+|+.- ++
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~--~~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~~-~~~~~~-~~d~vl~~-----~P 115 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKP--YSI--GDSYISELATRENLRLNGIDESSVKFLDS-TADYPQ-QPGVVLIK-----VP 115 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCC--Cee--ehHHHHHHHHHHHHHHcCCCcccceeecc-cccccC-CCCEEEEE-----eC
Confidence 689999999999999986644 222 232211 1123334455433 222221 223444 48998743 32
Q ss_pred cc---HHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 332 QK---DGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 332 ~d---~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
.. .+..|..+.++|.||+.++..+-.
T Consensus 116 K~~~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 116 KTLALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 22 246788899999999998876654
No 441
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=37.19 E-value=1.3e+02 Score=30.84 Aligned_cols=92 Identities=20% Similarity=0.124 Sum_probs=53.3
Q ss_pred ceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC------CCCCCCeeEEEeccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL------PYPSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L------pf~d~sFDlVvss~~ 326 (474)
.+||=.|+| .|..+..+++. |. ..++.++.+++..+.+++.+....+. .+...+ ..++..||+|+....
T Consensus 189 ~~VlI~g~g~vG~~~~~lak~~G~--~~vi~~~~s~~~~~~~~~~g~~~v~~-~~~~~~~~~l~~~~~~~~~d~vld~vg 265 (367)
T cd08263 189 ETVAVIGVGGVGSSAIQLAKAFGA--SPIIAVDVRDEKLAKAKELGATHTVN-AAKEDAVAAIREITGGRGVDVVVEALG 265 (367)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHhCCceEec-CCcccHHHHHHHHhCCCCCCEEEEeCC
Confidence 566655654 34444445544 32 23777788888888877666432221 111111 123456999985421
Q ss_pred cccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. ...+.++.+.|+++|.++....
T Consensus 266 ------~-~~~~~~~~~~l~~~G~~v~~g~ 288 (367)
T cd08263 266 ------K-PETFKLALDVVRDGGRAVVVGL 288 (367)
T ss_pred ------C-HHHHHHHHHHHhcCCEEEEEcc
Confidence 1 1267888999999999987653
No 442
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=36.84 E-value=2.4e+02 Score=27.63 Aligned_cols=92 Identities=16% Similarity=0.116 Sum_probs=53.1
Q ss_pred ceEEEECCC--CchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecc---cCC--CCCCCCeeEEEecccc
Q 011964 255 RTILDIGCG--YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS---KQL--PYPSLSFDMLHCARCG 327 (474)
Q Consensus 255 ~~VLDIGCG--tG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~---~~L--pf~d~sFDlVvss~~l 327 (474)
.+||=+|.+ .|..+..++... ...++.++.++...+.+...+....+...+. ..+ ......+|+++....
T Consensus 168 ~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~g- 244 (342)
T cd08266 168 ETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVVVEHVG- 244 (342)
T ss_pred CEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcEEEECCc-
Confidence 578878865 455555555442 2356677788777777765554322211110 000 012346898886532
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
...+.++.+.|+++|.++....
T Consensus 245 -------~~~~~~~~~~l~~~G~~v~~~~ 266 (342)
T cd08266 245 -------AATWEKSLKSLARGGRLVTCGA 266 (342)
T ss_pred -------HHHHHHHHHHhhcCCEEEEEec
Confidence 1356777889999999887653
No 443
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=36.77 E-value=20 Score=31.75 Aligned_cols=18 Identities=6% Similarity=0.268 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 011964 58 NFTMLFLKFSLIAIVFLA 75 (474)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~ 75 (474)
||++++++|+++||++++
T Consensus 1 RW~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFL 18 (130)
T ss_pred CeeeHHHHHHHHHHHHHH
Confidence 455666555555555555
No 444
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=36.58 E-value=53 Score=27.40 Aligned_cols=13 Identities=15% Similarity=0.388 Sum_probs=9.6
Q ss_pred ECCCCchHHHHhh
Q 011964 260 IGCGYGSFGAHLF 272 (474)
Q Consensus 260 IGCGtG~~~~~La 272 (474)
+-||+|.-+..++
T Consensus 7 vvCgsG~~TS~m~ 19 (94)
T PRK10310 7 VACGGAVATSTMA 19 (94)
T ss_pred EECCCchhHHHHH
Confidence 5689888776664
No 445
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=36.49 E-value=3e+02 Score=26.70 Aligned_cols=93 Identities=18% Similarity=0.235 Sum_probs=50.3
Q ss_pred CceEEEECC--CCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC---CCCCCCeeEEEeccccc
Q 011964 254 VRTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL---PYPSLSFDMLHCARCGV 328 (474)
Q Consensus 254 ~~~VLDIGC--GtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L---pf~d~sFDlVvss~~l~ 328 (474)
..+||-.|+ +.|..+..+++.. ...++.++.+ ...+.+++.+....+.. ..... ....+.+|+|+....
T Consensus 144 g~~vli~g~~g~~g~~~~~la~~~--g~~v~~~~~~-~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~d~vi~~~~-- 217 (319)
T cd08267 144 GQRVLINGASGGVGTFAVQIAKAL--GAHVTGVCST-RNAELVRSLGADEVIDY-TTEDFVALTAGGEKYDVIFDAVG-- 217 (319)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHc--CCEEEEEeCH-HHHHHHHHcCCCEeecC-CCCCcchhccCCCCCcEEEECCC--
Confidence 368999997 3566666666552 2356665544 56677766665322211 11111 123456899985422
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
.........+. .|+++|.++....
T Consensus 218 ---~~~~~~~~~~~-~l~~~g~~i~~g~ 241 (319)
T cd08267 218 ---NSPFSLYRASL-ALKPGGRYVSVGG 241 (319)
T ss_pred ---chHHHHHHhhh-ccCCCCEEEEecc
Confidence 11122333333 3999999997654
No 446
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=36.48 E-value=1.7e+02 Score=29.94 Aligned_cols=93 Identities=14% Similarity=0.065 Sum_probs=55.0
Q ss_pred ceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecc-cCC-----CCCCCCeeEEEeccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS-KQL-----PYPSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~-~~L-----pf~d~sFDlVvss~~ 326 (474)
.+||=.|+| .|..+..+++. |. ..+++++.+++.++.+++.|....+...+. ..+ ....+.+|+|+-...
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~G~--~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G 266 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIRGA--SRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECTG 266 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 678878764 23344444444 32 267888999999999887775433321110 000 012235888874311
Q ss_pred cccccccHHHHHHHHHhhcCCC-cEEEEEeC
Q 011964 327 GVDWDQKDGILLLEVDRVLKPG-GYFVWTSP 356 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPG-G~lvis~~ 356 (474)
....+....+.+++| |.+++...
T Consensus 267 -------~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 267 -------NIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred -------ChHHHHHHHHHhhcCCCEEEEECc
Confidence 134677788899996 99988764
No 447
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=36.46 E-value=2.6e+02 Score=27.52 Aligned_cols=94 Identities=20% Similarity=0.158 Sum_probs=53.0
Q ss_pred eEEEECCCC-c-hHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcE---EE-ee-cccCCCCCCCCeeEEEeccccc
Q 011964 256 TILDIGCGY-G-SFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAM---IG-SF-ASKQLPYPSLSFDMLHCARCGV 328 (474)
Q Consensus 256 ~VLDIGCGt-G-~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~---~~-~~-d~~~Lpf~d~sFDlVvss~~l~ 328 (474)
+|+=||+|. | .++..|++.| ..|+.++.+++.++..++.++... .. .. ...+. -+...+|+|+..--
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g---~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~d~vila~k-- 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG---HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDP-AELGPQDLVILAVK-- 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC---CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCCh-hHcCCCCEEEEecc--
Confidence 467788874 2 2444455555 356777776666666666565331 00 00 00111 11156899986522
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
. .+...++.++...+.++..+++...+
T Consensus 76 ~--~~~~~~~~~l~~~l~~~~~iv~~~nG 102 (304)
T PRK06522 76 A--YQLPAALPSLAPLLGPDTPVLFLQNG 102 (304)
T ss_pred c--ccHHHHHHHHhhhcCCCCEEEEecCC
Confidence 1 23467888898888888777665444
No 448
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.39 E-value=1e+02 Score=27.34 Aligned_cols=79 Identities=11% Similarity=0.099 Sum_probs=46.0
Q ss_pred CceEEEECCCCch-HHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC--CCCCCeeEEEeccccccc
Q 011964 254 VRTILDIGCGYGS-FGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--YPSLSFDMLHCARCGVDW 330 (474)
Q Consensus 254 ~~~VLDIGCGtG~-~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lp--f~d~sFDlVvss~~l~~~ 330 (474)
.++|.|||-|.=. .+..|+++| ..++++|+++. .|. .|++. ..-|..+-. .- ...|+|.+..+
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g---~dv~atDI~~~---~a~-~g~~~--v~DDitnP~~~iY-~~A~lIYSiRp---- 79 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERG---FDVLATDINEK---TAP-EGLRF--VVDDITNPNISIY-EGADLIYSIRP---- 79 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcC---CcEEEEecccc---cCc-ccceE--EEccCCCccHHHh-hCccceeecCC----
Confidence 3589999998654 556677776 47889999886 232 23333 322333221 11 24788887754
Q ss_pred cccHHHHHHHHHhhcC
Q 011964 331 DQKDGILLLEVDRVLK 346 (474)
Q Consensus 331 ~~d~~~~L~ei~RvLK 346 (474)
.++...++-++.+.++
T Consensus 80 ppEl~~~ildva~aVg 95 (129)
T COG1255 80 PPELQSAILDVAKAVG 95 (129)
T ss_pred CHHHHHHHHHHHHhhC
Confidence 1333455555555543
No 449
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=36.07 E-value=2.5e+02 Score=28.96 Aligned_cols=92 Identities=15% Similarity=0.095 Sum_probs=54.2
Q ss_pred ceEEEECC--CCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeeccc------------------CC-C-
Q 011964 255 RTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK------------------QL-P- 312 (474)
Q Consensus 255 ~~VLDIGC--GtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~------------------~L-p- 312 (474)
.+||=.|+ +.|..+..+++.- ...++.++.+++..+.+++.|....+...... .. .
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~--G~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAA--GANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRF 272 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccchH
Confidence 67888886 4555555566541 24556678888888888876643222110000 00 0
Q ss_pred -------CCCC-CeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 313 -------YPSL-SFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 313 -------f~d~-sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
.... .+|+|+... . ...+.+..+.|+++|.++....
T Consensus 273 ~~~v~~l~~~~~g~d~vid~~------g--~~~~~~~~~~l~~~G~~v~~g~ 316 (393)
T cd08246 273 GKAIWDILGGREDPDIVFEHP------G--RATFPTSVFVCDRGGMVVICAG 316 (393)
T ss_pred HHHHHHHhCCCCCCeEEEECC------c--hHhHHHHHHHhccCCEEEEEcc
Confidence 1122 588887431 1 1257778899999999998653
No 450
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=35.68 E-value=83 Score=32.61 Aligned_cols=98 Identities=13% Similarity=0.076 Sum_probs=62.6
Q ss_pred CCceEEEECCCC-chHHHHhhhcCCceeEEEEecCCHHHHHHHHHc-CCCcEEEeecccCCCCCCCCeeEEEeccccccc
Q 011964 253 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLER-GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (474)
Q Consensus 253 ~~~~VLDIGCGt-G~~~~~La~~g~~~~~v~giD~s~~~l~~A~er-g~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~ 330 (474)
.+.+|.=||.|. |..+..++-- ....|+-+|.|..-++..... +..+....-....+.-.-...|+|+.. +++.-
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~g--lgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIga-VLIpg 243 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIG--LGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGA-VLIPG 243 (371)
T ss_pred CCccEEEECCccccchHHHHHhc--cCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEE-EEecC
Confidence 345678888884 6677777654 235788889997766554432 333333222222222122368999976 44555
Q ss_pred cccHHHHHHHHHhhcCCCcEEEE
Q 011964 331 DQKDGILLLEVDRVLKPGGYFVW 353 (474)
Q Consensus 331 ~~d~~~~L~ei~RvLKPGG~lvi 353 (474)
...+.-..+|+...+|||..++=
T Consensus 244 akaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEEE
Confidence 56677889999999999998873
No 451
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=35.56 E-value=1.1e+02 Score=32.64 Aligned_cols=88 Identities=14% Similarity=0.039 Sum_probs=53.0
Q ss_pred CceEEEECCCC-chHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEeccccccccc
Q 011964 254 VRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (474)
Q Consensus 254 ~~~VLDIGCGt-G~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~ 332 (474)
..+|+=+|+|. |......++. ....|+.+|.++.....|...|. .+. +.++. . ...|+|++.-.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~--~Ga~ViV~d~dp~r~~~A~~~G~--~v~--~leea-l--~~aDVVItaTG------ 259 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARG--MGARVIVTEVDPIRALEAAMDGF--RVM--TMEEA-A--KIGDIFITATG------ 259 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhh--CcCEEEEEeCChhhHHHHHhcCC--EeC--CHHHH-H--hcCCEEEECCC------
Confidence 47899999996 4333333333 23467778877765555555453 221 11111 1 24699886421
Q ss_pred cHHHHHH-HHHhhcCCCcEEEEEeCC
Q 011964 333 KDGILLL-EVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 333 d~~~~L~-ei~RvLKPGG~lvis~~~ 357 (474)
. ..++. +....+|+|++++.....
T Consensus 260 ~-~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 260 N-KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred C-HHHHHHHHHhcCCCCcEEEEECCC
Confidence 2 33454 588999999999998765
No 452
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=35.35 E-value=23 Score=33.04 Aligned_cols=23 Identities=39% Similarity=0.339 Sum_probs=19.3
Q ss_pred HHHHHHHHhhcCCCcEEEEEeCC
Q 011964 335 GILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 335 ~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
...+.++.|+|||||.+++....
T Consensus 36 ~~~~~~~~rvLk~~g~~~i~~~~ 58 (231)
T PF01555_consen 36 EEWLKECYRVLKPGGSIFIFIDD 58 (231)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE-C
T ss_pred HHHHHHHHhhcCCCeeEEEEecc
Confidence 57899999999999999987643
No 453
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=35.16 E-value=1e+02 Score=34.55 Aligned_cols=58 Identities=21% Similarity=0.354 Sum_probs=42.6
Q ss_pred CCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecc
Q 011964 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCAR 325 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~ 325 (474)
+..+|| +-||+|.-+..+.+.. .-+..+++|+++.+.+.+..+.+-....+|+|+++.
T Consensus 505 k~mKIL-vaCGsGiGTStmva~k--------------Ikk~Lke~GI~veV~~~~Vsev~s~~~~aDIIVtt~ 562 (602)
T PRK09548 505 KPVRIL-AVCGQGQGSSMMMKMK--------------IKKYLDKRGIPIIMDSCAVNDYKGKLETIDIIVCSK 562 (602)
T ss_pred cccEEE-EECCCCchHHHHHHHH--------------HHHHHHHcCCCeEEEEechHhCcccCCCCCEEEEcc
Confidence 345666 8899998888776541 234567788888888888877776666799999873
No 454
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=35.11 E-value=1.5e+02 Score=30.37 Aligned_cols=93 Identities=15% Similarity=0.054 Sum_probs=48.7
Q ss_pred ceEEEECCC-CchHHHHhhhcCCceeEEEEecCCHHHHHHHH-HcCCCcEEEeecccCCCCCCCCeeEEEeccccccccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~g~~~~~v~giD~s~~~l~~A~-erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~ 332 (474)
.+||=+|+| .|.++..+++.. ...++.++.+++....+. +.|....+...+...+.-....+|+|+-...
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g------ 253 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVP------ 253 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCC------
Confidence 567766654 344445555542 134566666665554443 3454322211111111000124788874311
Q ss_pred cHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 333 KDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 333 d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
....+.+..+.|++||.++....
T Consensus 254 -~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 254 -VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred -chHHHHHHHHHhccCCEEEEECC
Confidence 12367788899999999998764
No 455
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=34.91 E-value=1.1e+02 Score=32.84 Aligned_cols=89 Identities=12% Similarity=0.024 Sum_probs=52.3
Q ss_pred CceEEEECCCCc-hHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEeccccccccc
Q 011964 254 VRTILDIGCGYG-SFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (474)
Q Consensus 254 ~~~VLDIGCGtG-~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~ 332 (474)
.++|+=+|+|.= ......++. ...+|+.+|.++.....+...|.. +. +.+.. + ..+|+|+..- .
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~--~Ga~ViV~d~dp~ra~~A~~~G~~--v~--~l~ea-l--~~aDVVI~aT------G 276 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRG--LGARVIVTEVDPICALQAAMDGFR--VM--TMEEA-A--ELGDIFVTAT------G 276 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCCchhhHHHHhcCCE--ec--CHHHH-H--hCCCEEEECC------C
Confidence 478999999842 222222222 124678888887665555544432 11 11111 1 2589998652 1
Q ss_pred cHHHHHH-HHHhhcCCCcEEEEEeCCC
Q 011964 333 KDGILLL-EVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 333 d~~~~L~-ei~RvLKPGG~lvis~~~~ 358 (474)
. ..++. +....+|+|++++......
T Consensus 277 ~-~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 277 N-KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred C-HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 2 23554 7889999999999887653
No 456
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=34.84 E-value=1.9e+02 Score=28.54 Aligned_cols=92 Identities=15% Similarity=0.151 Sum_probs=55.8
Q ss_pred ceEEEECC--CCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecc--cCC-CCCCCCeeEEEecccccc
Q 011964 255 RTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS--KQL-PYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 255 ~~VLDIGC--GtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~--~~L-pf~d~sFDlVvss~~l~~ 329 (474)
.+||=+|+ +.|..+..+++.- ...++.++.+++..+.+++.+....+..-+. +.+ .+....+|+|+-...
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g--- 222 (326)
T cd08289 148 GPVLVTGATGGVGSLAVSILAKL--GYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVG--- 222 (326)
T ss_pred CEEEEEcCCchHHHHHHHHHHHC--CCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCc---
Confidence 57888886 3455555566542 2357777888888888877665332211110 000 122345888874321
Q ss_pred ccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 330 WDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 330 ~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
...+.+..+.|+++|.++....
T Consensus 223 -----~~~~~~~~~~l~~~G~~i~~g~ 244 (326)
T cd08289 223 -----GKTLAYLLSTLQYGGSVAVSGL 244 (326)
T ss_pred -----HHHHHHHHHHhhcCCEEEEEee
Confidence 2367788999999999998764
No 457
>PRK08507 prephenate dehydrogenase; Validated
Probab=34.82 E-value=1.5e+02 Score=29.29 Aligned_cols=85 Identities=24% Similarity=0.219 Sum_probs=49.3
Q ss_pred eEEEECCCC--chHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccccc
Q 011964 256 TILDIGCGY--GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (474)
Q Consensus 256 ~VLDIGCGt--G~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d 333 (474)
+|.=||+|. +.++..|.+.+. ...++++|.+++.++.+.+.+...... +... .. ..|+|+..-- . ..
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~-~~~v~~~d~~~~~~~~~~~~g~~~~~~--~~~~--~~--~aD~Vilavp---~-~~ 70 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGL-ISKVYGYDHNELHLKKALELGLVDEIV--SFEE--LK--KCDVIFLAIP---V-DA 70 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHCCCCcccC--CHHH--Hh--cCCEEEEeCc---H-HH
Confidence 355577764 445556665553 346888999998888877666421111 1111 12 2798886521 1 22
Q ss_pred HHHHHHHHHhhcCCCcEEE
Q 011964 334 DGILLLEVDRVLKPGGYFV 352 (474)
Q Consensus 334 ~~~~L~ei~RvLKPGG~lv 352 (474)
...++.++.. +++|..++
T Consensus 71 ~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 71 IIEILPKLLD-IKENTTII 88 (275)
T ss_pred HHHHHHHHhc-cCCCCEEE
Confidence 3457778777 77776443
No 458
>PRK10083 putative oxidoreductase; Provisional
Probab=34.30 E-value=2.1e+02 Score=28.61 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=53.4
Q ss_pred ceEEEECCC-CchHHHHhhhc--CCceeEEEEecCCHHHHHHHHHcCCCcEEEeec---ccCCCCCCCCeeEEEeccccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSK--ELLTMCIANYEASGSQVQLTLERGLPAMIGSFA---SKQLPYPSLSFDMLHCARCGV 328 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~--g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d---~~~Lpf~d~sFDlVvss~~l~ 328 (474)
.+||=+|+| .|..+..+++. |. ..++.++.+++..+.+++.|....+...+ .+.+.-....+|+|+-...
T Consensus 162 ~~vlI~g~g~vG~~~~~~a~~~~G~--~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g-- 237 (339)
T PRK10083 162 DVALIYGAGPVGLTIVQVLKGVYNV--KAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAAC-- 237 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCC--CEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCC--
Confidence 577778854 23333444442 43 34777888888888888877633322111 0011101113457764311
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. ...+.+..+.|+++|.++....
T Consensus 238 ----~-~~~~~~~~~~l~~~G~~v~~g~ 260 (339)
T PRK10083 238 ----H-PSILEEAVTLASPAARIVLMGF 260 (339)
T ss_pred ----C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 2378888999999999998764
No 459
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=33.79 E-value=55 Score=32.69 Aligned_cols=35 Identities=9% Similarity=0.129 Sum_probs=26.5
Q ss_pred CceEEEECCCCchHHHHhhhcCC----ceeEEEEecCCH
Q 011964 254 VRTILDIGCGYGSFGAHLFSKEL----LTMCIANYEASG 288 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~----~~~~v~giD~s~ 288 (474)
...++|+|||.|.++.++++.-. ....+..+|-..
T Consensus 19 ~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 19 DSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 35899999999999999987621 235677788754
No 460
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=33.11 E-value=36 Score=21.71 Aligned_cols=18 Identities=17% Similarity=0.373 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhcCc
Q 011964 62 LFLKFSLIAIVFLALTGS 79 (474)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~ 79 (474)
..=++++.+++++.|+||
T Consensus 6 mmKkil~~l~a~~~LagC 23 (25)
T PF08139_consen 6 MMKKILFPLLALFMLAGC 23 (25)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 345677788888889887
No 461
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=32.96 E-value=61 Score=33.96 Aligned_cols=97 Identities=13% Similarity=0.073 Sum_probs=50.1
Q ss_pred CceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHc-CCCcEEEeecccCCCCCCCCeeEEEeccccccc
Q 011964 254 VRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER-GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (474)
Q Consensus 254 ~~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~er-g~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~ 330 (474)
+.+|+=||+| .|..+...+.. | ..|+.+|.++..++.+... +..+.....+.+.+.-.-..+|+|+..-. ..-
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lG---a~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~-~~g 242 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLG---ATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVL-IPG 242 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCC---CeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccc-cCC
Confidence 4568999888 44455554443 4 3688889888766655433 22111111111111100135899997521 111
Q ss_pred cccHHHHHHHHHhhcCCCcEEEEE
Q 011964 331 DQKDGILLLEVDRVLKPGGYFVWT 354 (474)
Q Consensus 331 ~~d~~~~L~ei~RvLKPGG~lvis 354 (474)
...+..+-+++.+.+|||+.++-.
T Consensus 243 ~~~p~lit~~~l~~mk~g~vIvDv 266 (370)
T TIGR00518 243 AKAPKLVSNSLVAQMKPGAVIVDV 266 (370)
T ss_pred CCCCcCcCHHHHhcCCCCCEEEEE
Confidence 111222335666778999887753
No 462
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=32.93 E-value=87 Score=35.04 Aligned_cols=95 Identities=18% Similarity=0.140 Sum_probs=56.2
Q ss_pred ceEEEECCCCchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC----CCCCCeeEEEecccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP----YPSLSFDMLHCARCGVD 329 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lp----f~d~sFDlVvss~~l~~ 329 (474)
.+|+=+| .|.++..+++. .-....++.+|.+++.++.+++.+.++.+. |+.+.. ..-+..|++++..-
T Consensus 401 ~~vII~G--~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~G--Dat~~~~L~~agi~~A~~vv~~~~--- 473 (601)
T PRK03659 401 PQVIIVG--FGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYG--DATQLELLRAAGAEKAEAIVITCN--- 473 (601)
T ss_pred CCEEEec--CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEe--eCCCHHHHHhcCCccCCEEEEEeC---
Confidence 3455555 45555555432 001247889999999999998877666655 443322 12235788876521
Q ss_pred ccccHHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 330 WDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 330 ~~~d~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
- ++....+-...|.+.|...++.....
T Consensus 474 d-~~~n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 474 E-PEDTMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred C-HHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 1 11123455566778888888876544
No 463
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=32.70 E-value=36 Score=34.95 Aligned_cols=97 Identities=18% Similarity=0.159 Sum_probs=61.7
Q ss_pred ceEEEECCCCchHHH-HhhhcCCceeEEEEecCCHHHHHHHHHc----CCCc--EEEeecccCCCCCCCCeeEEEecccc
Q 011964 255 RTILDIGCGYGSFGA-HLFSKELLTMCIANYEASGSQVQLTLER----GLPA--MIGSFASKQLPYPSLSFDMLHCARCG 327 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~-~La~~g~~~~~v~giD~s~~~l~~A~er----g~~~--~~~~~d~~~Lpf~d~sFDlVvss~~l 327 (474)
..|+|+=+|-|.|+. .|...+. ..|.++|.++..++..++. ++.. .+..+ ..+.+-++...|-|.....
T Consensus 196 eviVDLYAGIGYFTlpflV~agA--k~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~g-d~R~~~~~~~AdrVnLGLl- 271 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLVTAGA--KTVFACEWNPWSVEALRRNAEANNVMDRCRITEG-DNRNPKPRLRADRVNLGLL- 271 (351)
T ss_pred chhhhhhcccceEEeehhhccCc--cEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhc-cccccCccccchheeeccc-
Confidence 679999999999998 7777654 6789999999888755433 1111 12222 3456677788888875421
Q ss_pred ccccccHHHHHHHHHhhcCCCc--EEEEEeCCCC
Q 011964 328 VDWDQKDGILLLEVDRVLKPGG--YFVWTSPLTN 359 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG--~lvis~~~~~ 359 (474)
+.-++-.--.-.+|||.| ++-+-+-+..
T Consensus 272 ----PSse~~W~~A~k~Lk~eggsilHIHenV~~ 301 (351)
T KOG1227|consen 272 ----PSSEQGWPTAIKALKPEGGSILHIHENVKD 301 (351)
T ss_pred ----cccccchHHHHHHhhhcCCcEEEEeccccc
Confidence 333344445566777744 5555554433
No 464
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=32.69 E-value=2.1e+02 Score=28.58 Aligned_cols=89 Identities=19% Similarity=0.232 Sum_probs=51.1
Q ss_pred ceEEEECC--CCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccC---C-CCCCCCeeEEEeccccc
Q 011964 255 RTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ---L-PYPSLSFDMLHCARCGV 328 (474)
Q Consensus 255 ~~VLDIGC--GtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~---L-pf~d~sFDlVvss~~l~ 328 (474)
.+||=+|+ +.|..+..+++.. ...++.++.+. ..+.+++.+.. .+....... . ......+|+|+....
T Consensus 179 ~~vlI~g~~g~ig~~~~~~a~~~--g~~vi~~~~~~-~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~d~vi~~~g-- 252 (350)
T cd08274 179 ETVLVTGASGGVGSALVQLAKRR--GAIVIAVAGAA-KEEAVRALGAD-TVILRDAPLLADAKALGGEPVDVVADVVG-- 252 (350)
T ss_pred CEEEEEcCCcHHHHHHHHHHHhc--CCEEEEEeCch-hhHHHHhcCCe-EEEeCCCccHHHHHhhCCCCCcEEEecCC--
Confidence 67888887 4555555555542 13455555444 66677666653 222111000 0 113346999985421
Q ss_pred cccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 329 DWDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 329 ~~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
...+.++.+.|+++|.++...
T Consensus 253 ------~~~~~~~~~~l~~~G~~v~~g 273 (350)
T cd08274 253 ------GPLFPDLLRLLRPGGRYVTAG 273 (350)
T ss_pred ------HHHHHHHHHHhccCCEEEEec
Confidence 126788899999999998654
No 465
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=32.54 E-value=5e+02 Score=25.68 Aligned_cols=101 Identities=10% Similarity=0.062 Sum_probs=57.8
Q ss_pred CceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHH----HcC----CCcEEEeeccc-CC-------CCCCCC
Q 011964 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERG----LPAMIGSFASK-QL-------PYPSLS 317 (474)
Q Consensus 254 ~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~----erg----~~~~~~~~d~~-~L-------pf~d~s 317 (474)
...|+.+|||-=.-...+... ....+.-+|..+ .++.-+ +.+ ....++..|.. .+ .|..+.
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~--~~~~~~EvD~P~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWP--DGTRVFEVDQPA-VLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred CcEEEEeCCccccHHHhcCCC--CCCeEEECCChH-HHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 467999999988777777433 124566667654 332221 111 12334444443 11 132223
Q ss_pred eeEEEecccccccccc-HHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 318 FDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 318 FDlVvss~~l~~~~~d-~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
--++++..++..+.++ ...+|..+.+...||+.+++....
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 3456666665555332 347888898888899999886543
No 466
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=32.48 E-value=2.2e+02 Score=28.70 Aligned_cols=93 Identities=13% Similarity=0.160 Sum_probs=53.8
Q ss_pred ceEEEECCCC-chHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecc--cCC--CCCCCCee-EEEecccc
Q 011964 255 RTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS--KQL--PYPSLSFD-MLHCARCG 327 (474)
Q Consensus 255 ~~VLDIGCGt-G~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~--~~L--pf~d~sFD-lVvss~~l 327 (474)
.+||=+|+|. |..+..+++. |. ..++.++.+++-.+.+++.+....+..-+. ..+ -.....+| +|+-. +
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~G~--~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~-~- 237 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVALGA--KSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILET-A- 237 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEEC-C-
Confidence 6788888743 3344444444 32 236778889988888877665322211100 000 01223577 55422 1
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
.. ...+.+..+.|++||.+++...
T Consensus 238 ----G~-~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 238 ----GV-PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred ----CC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 11 3478889999999999998764
No 467
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=31.37 E-value=2e+02 Score=29.00 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=53.6
Q ss_pred ceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC-------CCCCCeeEEEecc
Q 011964 255 RTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP-------YPSLSFDMLHCAR 325 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lp-------f~d~sFDlVvss~ 325 (474)
.+||-.|+| .|..+..+++. |. ..++.++.++...+.+.+.+....+. ..... ...+.+|+|+...
T Consensus 177 ~~vlI~g~g~vg~~~~~~a~~~G~--~~v~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~d~vid~~ 251 (350)
T cd08240 177 EPVVIIGAGGLGLMALALLKALGP--ANIIVVDIDEAKLEAAKAAGADVVVN---GSDPDAAKRIIKAAGGGVDAVIDFV 251 (350)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCC--CeEEEEeCCHHHHHHHHHhCCcEEec---CCCccHHHHHHHHhCCCCcEEEECC
Confidence 677777754 33344444444 32 25667788888888887766532221 11111 1122588888542
Q ss_pred ccccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 326 ~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. ....+.+..+.|+++|.++....
T Consensus 252 g-------~~~~~~~~~~~l~~~g~~v~~g~ 275 (350)
T cd08240 252 N-------NSATASLAFDILAKGGKLVLVGL 275 (350)
T ss_pred C-------CHHHHHHHHHHhhcCCeEEEECC
Confidence 1 13468889999999999997643
No 468
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=30.94 E-value=2.5e+02 Score=27.74 Aligned_cols=93 Identities=14% Similarity=0.082 Sum_probs=50.3
Q ss_pred eEEEECCCCch--HHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeec-------ccCCCCCCCCeeEEEeccc
Q 011964 256 TILDIGCGYGS--FGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFA-------SKQLPYPSLSFDMLHCARC 326 (474)
Q Consensus 256 ~VLDIGCGtG~--~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d-------~~~Lpf~d~sFDlVvss~~ 326 (474)
+|+=||+|.-. ++..|++.|. +|+.++. ++.++..++.++.......+ ..+..-....+|+|+..--
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~---~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk 77 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR---DVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK 77 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC---ceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEec
Confidence 46777887532 4455566553 5666666 55666555555432211000 0001001256898875421
Q ss_pred cccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. ...+.++.++...+.++..++....
T Consensus 78 --~--~~~~~~~~~l~~~~~~~~~ii~~~n 103 (305)
T PRK12921 78 --A--YQLDAAIPDLKPLVGEDTVIIPLQN 103 (305)
T ss_pred --c--cCHHHHHHHHHhhcCCCCEEEEeeC
Confidence 1 2346788888888888876665443
No 469
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=30.62 E-value=3.9e+02 Score=25.62 Aligned_cols=91 Identities=14% Similarity=0.071 Sum_probs=55.4
Q ss_pred ceEEEECC--CCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----C-CCCCCeeEEEeccc
Q 011964 255 RTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----P-YPSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGC--GtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L-----p-f~d~sFDlVvss~~ 326 (474)
.+||=.|+ +.|..+..+++.. ...++.++.++...+.+++.+....+...+ ..+ . .....+|+|+....
T Consensus 138 ~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~d~vl~~~~ 214 (320)
T cd05286 138 DTVLVHAAAGGVGLLLTQWAKAL--GATVIGTVSSEEKAELARAAGADHVINYRD-EDFVERVREITGGRGVDVVYDGVG 214 (320)
T ss_pred CEEEEEcCCchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHCCCCEEEeCCc-hhHHHHHHHHcCCCCeeEEEECCC
Confidence 67887884 4555666666552 245777788888888887766533222111 010 0 12346999985421
Q ss_pred cccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
...+.+..+.|+++|.++....
T Consensus 215 --------~~~~~~~~~~l~~~g~~v~~g~ 236 (320)
T cd05286 215 --------KDTFEGSLDSLRPRGTLVSFGN 236 (320)
T ss_pred --------cHhHHHHHHhhccCcEEEEEec
Confidence 1256778899999999987653
No 470
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=30.61 E-value=4.2e+02 Score=25.35 Aligned_cols=88 Identities=20% Similarity=0.277 Sum_probs=48.9
Q ss_pred ceEEEECC--CCchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC--CCCCCCeeEEEecccccc
Q 011964 255 RTILDIGC--GYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL--PYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 255 ~~VLDIGC--GtG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L--pf~d~sFDlVvss~~l~~ 329 (474)
.+||=.|+ +.|..+..+++. + ..++.++.+. ..+.+++.+....+. ...... ......+|+++....
T Consensus 146 ~~vlv~g~~g~~g~~~~~~a~~~g---~~v~~~~~~~-~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~d~v~~~~~--- 217 (309)
T cd05289 146 QTVLIHGAAGGVGSFAVQLAKARG---ARVIATASAA-NADFLRSLGADEVID-YTKGDFERAAAPGGVDAVLDTVG--- 217 (309)
T ss_pred CEEEEecCCchHHHHHHHHHHHcC---CEEEEEecch-hHHHHHHcCCCEEEe-CCCCchhhccCCCCceEEEECCc---
Confidence 57777775 345555555544 3 3445555555 566666555422221 111111 123346888875321
Q ss_pred ccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 330 WDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 330 ~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
...+....+.|+++|.++...
T Consensus 218 -----~~~~~~~~~~l~~~g~~v~~g 238 (309)
T cd05289 218 -----GETLARSLALVKPGGRLVSIA 238 (309)
T ss_pred -----hHHHHHHHHHHhcCcEEEEEc
Confidence 126778889999999998764
No 471
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=30.33 E-value=24 Score=32.71 Aligned_cols=35 Identities=31% Similarity=0.577 Sum_probs=19.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHhhcCccceeee
Q 011964 51 GTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTIS 85 (474)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (474)
+.|.++.+-+++.+.+++++++++|..+.++|.++
T Consensus 8 ~~~~~~~k~~~~I~liv~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 8 GAPAKKKKKSLWILLIVLIVLLALAGAGYFFWFGS 42 (159)
T ss_pred CCCccCCCceeehHHHHHHHHHHHHHHHHHHhhhc
Confidence 34444444445555555556666666667777654
No 472
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=30.30 E-value=92 Score=29.54 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=34.1
Q ss_pred CCCCCeeEEEeccccccccc-----------cHHHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 313 YPSLSFDMLHCARCGVDWDQ-----------KDGILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 313 f~d~sFDlVvss~~l~~~~~-----------d~~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
..++..|+|+.+.|+..+.. +.+.++..+..+|+|+-.+++.+..+
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 45677899999988765522 23467777888888999999887544
No 473
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=29.43 E-value=2.6e+02 Score=27.85 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=55.5
Q ss_pred ceEEEECCC--CchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecc---cCCC--CCCCCeeEEEecccc
Q 011964 255 RTILDIGCG--YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS---KQLP--YPSLSFDMLHCARCG 327 (474)
Q Consensus 255 ~~VLDIGCG--tG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~---~~Lp--f~d~sFDlVvss~~l 327 (474)
.+||=.|+| .|..+..+++.. ...++.+..+++..+.+.+.+....+..-+. ..+. .+.+.+|+|+....
T Consensus 167 ~~vlV~g~~~~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vd~vl~~~~- 243 (341)
T cd08297 167 DWVVISGAGGGLGHLGVQYAKAM--GLRVIAIDVGDEKLELAKELGADAFVDFKKSDDVEAVKELTGGGGAHAVVVTAV- 243 (341)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHcCCcEEEcCCCccHHHHHHHHhcCCCCCEEEEcCC-
Confidence 677877765 566777777662 2467777777777777765554322211110 0000 12346898884211
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
. ...+.+..+.|+++|.++...
T Consensus 244 ----~--~~~~~~~~~~l~~~g~~v~~g 265 (341)
T cd08297 244 ----S--AAAYEQALDYLRPGGTLVCVG 265 (341)
T ss_pred ----c--hHHHHHHHHHhhcCCEEEEec
Confidence 1 336778899999999999875
No 474
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=28.42 E-value=2.9e+02 Score=28.47 Aligned_cols=91 Identities=14% Similarity=0.171 Sum_probs=54.0
Q ss_pred ceEEEECCCCchHHHH---hhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecc---------cCCCCCCCCeeEE
Q 011964 255 RTILDIGCGYGSFGAH---LFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS---------KQLPYPSLSFDML 321 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~---La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~---------~~Lpf~d~sFDlV 321 (474)
.+||=.|+ |..+.. +++. |. ..++.++.++...+.+++.+....+..-+. .++ .+...+|+|
T Consensus 205 ~~VlV~g~--g~vG~~ai~lA~~~G~--~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~-~~g~gvDvv 279 (384)
T cd08265 205 AYVVVYGA--GPIGLAAIALAKAAGA--SKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEV-TKGWGADIQ 279 (384)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHh-cCCCCCCEE
Confidence 56666666 444443 3333 32 257778888877777787776433321110 011 223469988
Q ss_pred EeccccccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 322 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 322 vss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
+... ......+.++.+.|+++|.++....
T Consensus 280 ld~~------g~~~~~~~~~~~~l~~~G~~v~~g~ 308 (384)
T cd08265 280 VEAA------GAPPATIPQMEKSIAINGKIVYIGR 308 (384)
T ss_pred EECC------CCcHHHHHHHHHHHHcCCEEEEECC
Confidence 8542 1223478888999999999997653
No 475
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=28.06 E-value=1.3e+02 Score=25.33 Aligned_cols=51 Identities=14% Similarity=0.216 Sum_probs=34.5
Q ss_pred ECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEec
Q 011964 260 IGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCA 324 (474)
Q Consensus 260 IGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss 324 (474)
+-||+|.-+..+.+.. .-+.++++++++...+......+-.....|+++++
T Consensus 6 ~aCG~GvgSS~~ik~k--------------ve~~l~~~gi~~~~~~~~v~~~~~~~~~aDiiv~s 56 (93)
T COG3414 6 AACGNGVGSSTMIKMK--------------VEEVLKELGIDVDVEQCAVDEIKALTDGADIIVTS 56 (93)
T ss_pred EECCCCccHHHHHHHH--------------HHHHHHHcCCCceeeeEEecccccCCCcccEEEEe
Confidence 4699998887776542 22456777887666655555565444567999987
No 476
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=28.00 E-value=3.3e+02 Score=27.26 Aligned_cols=91 Identities=11% Similarity=0.127 Sum_probs=53.2
Q ss_pred ceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC---CCCCCeeEEEecccccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP---YPSLSFDMLHCARCGVD 329 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lp---f~d~sFDlVvss~~l~~ 329 (474)
.+||=.|+| .|..+..+++. | ..++.++.+++.++.+++.+....+. .....+. .....+|+|+....
T Consensus 165 ~~vlV~g~g~iG~~~~~~a~~~G---~~vi~~~~~~~~~~~~~~~g~~~~i~-~~~~~~~~~~~~~~~~d~vi~~~g--- 237 (333)
T cd08296 165 DLVAVQGIGGLGHLAVQYAAKMG---FRTVAISRGSDKADLARKLGAHHYID-TSKEDVAEALQELGGAKLILATAP--- 237 (333)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC---CeEEEEeCChHHHHHHHHcCCcEEec-CCCccHHHHHHhcCCCCEEEECCC---
Confidence 677778853 23333344443 3 35777888888888887766532221 1111110 00124788874311
Q ss_pred ccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 330 WDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 330 ~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
....+.++.+.|+++|.++....
T Consensus 238 ----~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 238 ----NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred ----chHHHHHHHHHcccCCEEEEEec
Confidence 13478888999999999997654
No 477
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=27.47 E-value=3.1e+02 Score=27.41 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=51.2
Q ss_pred ceEEEECCCCchHHHH---hhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecc------cCCCCCCCCeeEEEec
Q 011964 255 RTILDIGCGYGSFGAH---LFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS------KQLPYPSLSFDMLHCA 324 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~---La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~------~~Lpf~d~sFDlVvss 324 (474)
.+||=.|+ |..+.. +++. |. ..++.++.++.....+++.+....+..... ..+ .+...+|+|+..
T Consensus 168 ~~vlI~g~--g~~g~~~~~~a~~~G~--~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~-~~~~~~d~vld~ 242 (345)
T cd08286 168 DTVAIVGA--GPVGLAALLTAQLYSP--SKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLEL-TDGRGVDVVIEA 242 (345)
T ss_pred CEEEEECC--CHHHHHHHHHHHHcCC--CeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHH-hCCCCCCEEEEC
Confidence 45555665 444433 3433 31 356668888877777777665322221100 001 123469999853
Q ss_pred cccccccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 325 ~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
. .. ...+..+.+.|+++|.++...
T Consensus 243 ~------g~-~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 243 V------GI-PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred C------CC-HHHHHHHHHhccCCcEEEEec
Confidence 1 11 336788889999999998765
No 478
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=27.38 E-value=1.9e+02 Score=29.27 Aligned_cols=87 Identities=15% Similarity=0.048 Sum_probs=49.7
Q ss_pred CceEEEECCCCch-HHHHhh-hcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccc
Q 011964 254 VRTILDIGCGYGS-FGAHLF-SKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (474)
Q Consensus 254 ~~~VLDIGCGtG~-~~~~La-~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~ 331 (474)
..+|+=||.|.-. .....+ ..| ..++.+|.++...+.+.+.+.. .. ....+.-.-..+|+|+.+-. .
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~G---a~V~v~~r~~~~~~~~~~~G~~--~~--~~~~l~~~l~~aDiVI~t~p---~- 220 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALG---ANVTVGARKSAHLARITEMGLS--PF--HLSELAEEVGKIDIIFNTIP---A- 220 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHcCCe--ee--cHHHHHHHhCCCCEEEECCC---h-
Confidence 4789999987532 222222 234 4788889988777766665532 11 11111111136899997521 1
Q ss_pred ccHHHHHHHHHhhcCCCcEEEEE
Q 011964 332 QKDGILLLEVDRVLKPGGYFVWT 354 (474)
Q Consensus 332 ~d~~~~L~ei~RvLKPGG~lvis 354 (474)
...-+++...++||+.++-.
T Consensus 221 ---~~i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 221 ---LVLTKEVLSKMPPEALIIDL 240 (296)
T ss_pred ---hhhhHHHHHcCCCCcEEEEE
Confidence 22345677788999877643
No 479
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=27.22 E-value=3.5e+02 Score=26.93 Aligned_cols=92 Identities=17% Similarity=0.188 Sum_probs=52.8
Q ss_pred ceEEEECCC-CchHHHHhhhcCCceeE-EEEecCCHHHHHHHHHcCCCcEEEeecccCC-----C-CCCCCeeEEEeccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSKELLTMC-IANYEASGSQVQLTLERGLPAMIGSFASKQL-----P-YPSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~g~~~~~-v~giD~s~~~l~~A~erg~~~~~~~~d~~~L-----p-f~d~sFDlVvss~~ 326 (474)
.+||=.|+| .|..+..+++.. ... ++.+..++...+.+.+.+....+ ..+...+ . .+...+|+|+-...
T Consensus 167 ~~VlV~g~g~vg~~~~~la~~~--g~~~v~~~~~s~~~~~~~~~~g~~~~~-~~~~~~~~~~i~~~~~~~~vd~vld~~~ 243 (343)
T cd08235 167 DTVLVIGAGPIGLLHAMLAKAS--GARKVIVSDLNEFRLEFAKKLGADYTI-DAAEEDLVEKVRELTDGRGADVVIVATG 243 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhCCcEEe-cCCccCHHHHHHHHhCCcCCCEEEECCC
Confidence 566666764 444555555541 234 66777788777777665542221 1110000 0 22345899885311
Q ss_pred cccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
....+.++.+.|+++|.++....
T Consensus 244 -------~~~~~~~~~~~l~~~g~~v~~~~ 266 (343)
T cd08235 244 -------SPEAQAQALELVRKGGRILFFGG 266 (343)
T ss_pred -------ChHHHHHHHHHhhcCCEEEEEec
Confidence 12467888899999999987653
No 480
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=26.38 E-value=4.2e+02 Score=26.71 Aligned_cols=97 Identities=12% Similarity=0.061 Sum_probs=56.5
Q ss_pred ceEEEECCCC--chHHHHhhhcCCceeEEEEecCCHHHHHHHHH-cCCCcEEEeecccC------CCCCCCCeeEEEecc
Q 011964 255 RTILDIGCGY--GSFGAHLFSKELLTMCIANYEASGSQVQLTLE-RGLPAMIGSFASKQ------LPYPSLSFDMLHCAR 325 (474)
Q Consensus 255 ~~VLDIGCGt--G~~~~~La~~g~~~~~v~giD~s~~~l~~A~e-rg~~~~~~~~d~~~------Lpf~d~sFDlVvss~ 325 (474)
++|+=+|+|. |.++.+|.+.|. .|+.++-+.+.++..++ .|+... ....... .+-+.+.||+|+..-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~---~V~lv~r~~~~~~~i~~~~Gl~i~-~~g~~~~~~~~~~~~~~~~~~D~viv~v 78 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL---PVRLILRDRQRLAAYQQAGGLTLV-EQGQASLYAIPAETADAAEPIHRLLLAC 78 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC---CeEEEEechHHHHHHhhcCCeEEe-eCCcceeeccCCCCcccccccCEEEEEC
Confidence 4688899883 446666666653 56667776656655554 344221 0010000 011224799988651
Q ss_pred ccccccccHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 326 ~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
-.+ +...++..+...+.++..+++.-.+..
T Consensus 79 --K~~--~~~~al~~l~~~l~~~t~vv~lQNGv~ 108 (305)
T PRK05708 79 --KAY--DAEPAVASLAHRLAPGAELLLLQNGLG 108 (305)
T ss_pred --CHH--hHHHHHHHHHhhCCCCCEEEEEeCCCC
Confidence 222 345688999999999998777655443
No 481
>PLN02702 L-idonate 5-dehydrogenase
Probab=26.37 E-value=4.6e+02 Score=26.58 Aligned_cols=93 Identities=10% Similarity=0.049 Sum_probs=55.1
Q ss_pred ceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEee-cccC-------C-CCCCCCeeEEEe
Q 011964 255 RTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSF-ASKQ-------L-PYPSLSFDMLHC 323 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~-d~~~-------L-pf~d~sFDlVvs 323 (474)
.+||=+|+| .|..+..+++. |. ..++.++.++...+.+++.+....+... .... + ....+.+|+|+-
T Consensus 183 ~~vlI~g~g~vG~~~~~~a~~~G~--~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vid 260 (364)
T PLN02702 183 TNVLVMGAGPIGLVTMLAARAFGA--PRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSFD 260 (364)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEEEE
Confidence 567777764 34444455544 32 3467788888888887776654433210 0011 1 012346898875
Q ss_pred ccccccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 324 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 324 s~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
... . ...+.++.+.|+++|.++....
T Consensus 261 ~~g------~-~~~~~~~~~~l~~~G~~v~~g~ 286 (364)
T PLN02702 261 CVG------F-NKTMSTALEATRAGGKVCLVGM 286 (364)
T ss_pred CCC------C-HHHHHHHHHHHhcCCEEEEEcc
Confidence 411 1 2368899999999999887654
No 482
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=26.23 E-value=3.5e+02 Score=27.03 Aligned_cols=92 Identities=14% Similarity=0.065 Sum_probs=53.6
Q ss_pred ceEEEECCC-CchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecc-cCC-----CCCCCCeeEEEecccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS-KQL-----PYPSLSFDMLHCARCG 327 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~-~~L-----pf~d~sFDlVvss~~l 327 (474)
.+||=.|+| .|..+..+++.. ...++.++.+++..+.+++.++...+. ... ..+ .+..+.+|+|+....
T Consensus 167 ~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~g~~~~i~-~~~~~~~~~~~~~~~~~~~d~vi~~~g- 242 (345)
T cd08260 167 EWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELARELGAVATVN-ASEVEDVAAAVRDLTGGGAHVSVDALG- 242 (345)
T ss_pred CEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHhCCCEEEc-cccchhHHHHHHHHhCCCCCEEEEcCC-
Confidence 567777753 333444444441 246777888888888887666522221 111 111 111226899885421
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. ...+.+..+.|+++|.++....
T Consensus 243 -----~-~~~~~~~~~~l~~~g~~i~~g~ 265 (345)
T cd08260 243 -----I-PETCRNSVASLRKRGRHVQVGL 265 (345)
T ss_pred -----C-HHHHHHHHHHhhcCCEEEEeCC
Confidence 1 3467788999999999887653
No 483
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=26.02 E-value=2.1e+02 Score=28.70 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=48.1
Q ss_pred eEEEECCCC--chHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEecccccccccc
Q 011964 256 TILDIGCGY--GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (474)
Q Consensus 256 ~VLDIGCGt--G~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~d 333 (474)
+|-=||+|. +.++..|++.+ ..|...|.+++.++.+.+.+.... .+..++.-.-...|+|+..- .. ..
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g---~~V~~~dr~~~~~~~l~~~g~~~~---~s~~~~~~~~~~~dvIi~~v---p~-~~ 71 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRG---HDCVGYDHDQDAVKAMKEDRTTGV---ANLRELSQRLSAPRVVWVMV---PH-GI 71 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCC---CEEEEEECCHHHHHHHHHcCCccc---CCHHHHHhhcCCCCEEEEEc---Cc-hH
Confidence 355577764 23445555555 366778999988877766543211 11111100012358887652 11 13
Q ss_pred HHHHHHHHHhhcCCCcEEE
Q 011964 334 DGILLLEVDRVLKPGGYFV 352 (474)
Q Consensus 334 ~~~~L~ei~RvLKPGG~lv 352 (474)
.+.++.++...|++|-.++
T Consensus 72 ~~~v~~~l~~~l~~g~ivi 90 (298)
T TIGR00872 72 VDAVLEELAPTLEKGDIVI 90 (298)
T ss_pred HHHHHHHHHhhCCCCCEEE
Confidence 3567788888888875443
No 484
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=25.60 E-value=4.9e+02 Score=27.23 Aligned_cols=99 Identities=13% Similarity=0.068 Sum_probs=56.6
Q ss_pred ceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC------CCCCCeeEEEeccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP------YPSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lp------f~d~sFDlVvss~~ 326 (474)
.+||=.|+| .|..+..+++. |. ..++..|.+++-++.|++.|... +.......+. .....+|+|+-.-.
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~Ga--~~vi~~d~~~~r~~~a~~~Ga~~-v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G 263 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLLGA--AVVIVGDLNPARLAQARSFGCET-VDLSKDATLPEQIEQILGEPEVDCAVDCVG 263 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--ceEEEeCCCHHHHHHHHHcCCeE-EecCCcccHHHHHHHHcCCCCCcEEEECCC
Confidence 456557765 33444445543 43 23556788888889998887642 2111000110 12246899885422
Q ss_pred ccc--------ccccHHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 327 GVD--------WDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 327 l~~--------~~~d~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
.. ...+....+.+...++++||.+++....
T Consensus 264 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 264 -FEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred -CccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 11 0011235889999999999999997653
No 485
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.38 E-value=74 Score=33.04 Aligned_cols=98 Identities=13% Similarity=0.082 Sum_probs=56.3
Q ss_pred ceEEEEC-CCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHH-cCCCcEEEee-cccCCCCCCCCeeEEEecccccccc
Q 011964 255 RTILDIG-CGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE-RGLPAMIGSF-ASKQLPYPSLSFDMLHCARCGVDWD 331 (474)
Q Consensus 255 ~~VLDIG-CGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~e-rg~~~~~~~~-d~~~Lpf~d~sFDlVvss~~l~~~~ 331 (474)
..|-=+| +|-|.++..+++. -.++++++|-+..--+.|.+ .|....+... +.....--.++.|.++-.- ..+
T Consensus 183 ~~vgI~GlGGLGh~aVq~AKA--MG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v--~~~- 257 (360)
T KOG0023|consen 183 KWVGIVGLGGLGHMAVQYAKA--MGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTV--SNL- 257 (360)
T ss_pred cEEEEecCcccchHHHHHHHH--hCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceee--eec-
Confidence 3444444 4599999999987 23789999998755555554 3444333222 1111111112444443211 111
Q ss_pred ccHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 332 QKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 332 ~d~~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
.+..|..+.+.||++|.+++...+..
T Consensus 258 --a~~~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 258 --AEHALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred --cccchHHHHHHhhcCCEEEEEeCcCC
Confidence 13367788899999999999886553
No 486
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=25.30 E-value=73 Score=32.81 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=20.9
Q ss_pred HHHHHHHHhhcCCCcEEEEEeCCC
Q 011964 335 GILLLEVDRVLKPGGYFVWTSPLT 358 (474)
Q Consensus 335 ~~~L~ei~RvLKPGG~lvis~~~~ 358 (474)
-++|..+-..++||-.|+|++-+-
T Consensus 222 t~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 222 TKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred HHHHHHHHhhcCCCcEEEEEcCCC
Confidence 478999999999999999998544
No 487
>PLN02494 adenosylhomocysteinase
Probab=25.23 E-value=1.8e+02 Score=31.76 Aligned_cols=89 Identities=12% Similarity=0.067 Sum_probs=52.4
Q ss_pred CceEEEECCCC-chHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEeccccccccc
Q 011964 254 VRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (474)
Q Consensus 254 ~~~VLDIGCGt-G~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~ 332 (474)
.++|+=+|+|. |......++. . .+.|+.+|.++.....|...+..+ . +.++. + ...|+|++...
T Consensus 254 GKtVvViGyG~IGr~vA~~aka-~-Ga~VIV~e~dp~r~~eA~~~G~~v--v--~leEa-l--~~ADVVI~tTG------ 318 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKA-A-GARVIVTEIDPICALQALMEGYQV--L--TLEDV-V--SEADIFVTTTG------ 318 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-C-CCEEEEEeCCchhhHHHHhcCCee--c--cHHHH-H--hhCCEEEECCC------
Confidence 47899999884 3222222222 1 246888888876544555555432 1 11111 1 24799987422
Q ss_pred cHHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 333 KDGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 333 d~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
....+..+....+|+||+++.....
T Consensus 319 t~~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 319 NKDIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred CccchHHHHHhcCCCCCEEEEcCCC
Confidence 1122347888899999999998763
No 488
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=25.21 E-value=1.2e+02 Score=33.33 Aligned_cols=92 Identities=18% Similarity=0.113 Sum_probs=52.0
Q ss_pred ceEEEECCCCchHHHHhhhcC-CceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC----CCCCCeeEEEecccccc
Q 011964 255 RTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP----YPSLSFDMLHCARCGVD 329 (474)
Q Consensus 255 ~~VLDIGCGtG~~~~~La~~g-~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lp----f~d~sFDlVvss~~l~~ 329 (474)
.+|+=+||| .++..+++.- -....++.+|.+++.++.+++.+.++.+. |..+.. ..-+..|.+++.-.
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~G--D~~~~~~L~~a~i~~a~~viv~~~--- 490 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLG--NAANEEIMQLAHLDCARWLLLTIP--- 490 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEc--CCCCHHHHHhcCccccCEEEEEcC---
Confidence 345555555 4555555430 01246888999999999998877655554 433321 12236787765421
Q ss_pred ccccHH-HHHHHHHhhcCCCcEEEEEe
Q 011964 330 WDQKDG-ILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 330 ~~~d~~-~~L~ei~RvLKPGG~lvis~ 355 (474)
++.+ ..+-...|...|.-.++...
T Consensus 491 --~~~~~~~iv~~~~~~~~~~~iiar~ 515 (558)
T PRK10669 491 --NGYEAGEIVASAREKRPDIEIIARA 515 (558)
T ss_pred --ChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 2222 23444456667877777654
No 489
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=25.02 E-value=3.5e+02 Score=28.94 Aligned_cols=123 Identities=12% Similarity=0.078 Sum_probs=67.4
Q ss_pred cc-cchhhhHHHHHHHHhccccccccccCCceEEEECCCCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHc-------
Q 011964 226 IF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------- 297 (474)
Q Consensus 226 ~y-d~~~~~~~~l~~~l~~~~g~~l~~~~~~~VLDIGCGtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~er------- 297 (474)
.| +........+.+.+..+++ ....|+|.|.|.....++..+. ...-+|+++....-+.|...
T Consensus 172 ~YGE~~~~ql~si~dEl~~g~~--------D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~ 242 (419)
T KOG3924|consen 172 TYGETQLEQLRSIVDELKLGPA--------DVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKL 242 (419)
T ss_pred chhhhhHHHHHHHHHHhccCCC--------CcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHH
Confidence 44 3344455555666666555 7899999999998887766532 12223444432222222110
Q ss_pred ----CC---CcEEEeecccCCC---CCCCCeeEEEeccccccccccHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 298 ----GL---PAMIGSFASKQLP---YPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 298 ----g~---~~~~~~~d~~~Lp---f~d~sFDlVvss~~l~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
|. .+....++...-. .-....++|+++.+.+. ++...-+.++..-+++|-.++=+.+...
T Consensus 243 ~k~fGk~~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fd--p~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 243 MKHFGKKPNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFD--PELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred HHHhCCCcCceeecccccCCHHHHHHHhhcceEEEEecccCC--HHHHHhhHHHHhhCCCcceEeccccccc
Confidence 22 1222322211110 11235778887765432 3444456689999999999988776544
No 490
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=24.84 E-value=1.4e+02 Score=26.27 Aligned_cols=94 Identities=19% Similarity=0.136 Sum_probs=52.6
Q ss_pred EEECCCC-ch-HHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEee-----cccCC---CCCCCCeeEEEecccc
Q 011964 258 LDIGCGY-GS-FGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSF-----ASKQL---PYPSLSFDMLHCARCG 327 (474)
Q Consensus 258 LDIGCGt-G~-~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~-----d~~~L---pf~d~sFDlVvss~~l 327 (474)
+=+|+|. |. ++..|.+.+ .+|+.+.-.+ .++..++.++.+..... ..... +.....||+|+..-
T Consensus 2 ~I~G~GaiG~~~a~~L~~~g---~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v-- 75 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQAG---HDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV-- 75 (151)
T ss_dssp EEESTSHHHHHHHHHHHHTT---CEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S--
T ss_pred EEECcCHHHHHHHHHHHHCC---CceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe--
Confidence 4456652 33 333444444 3567777766 55555655543321110 00111 12356899998652
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~~~~~ 359 (474)
-. .+.+.++..+.+.+.|+..+++.-.+..
T Consensus 76 Ka--~~~~~~l~~l~~~~~~~t~iv~~qNG~g 105 (151)
T PF02558_consen 76 KA--YQLEQALQSLKPYLDPNTTIVSLQNGMG 105 (151)
T ss_dssp SG--GGHHHHHHHHCTGEETTEEEEEESSSSS
T ss_pred cc--cchHHHHHHHhhccCCCcEEEEEeCCCC
Confidence 12 2346799999999999988887765443
No 491
>PLN02256 arogenate dehydrogenase
Probab=24.51 E-value=3.1e+02 Score=27.91 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=43.8
Q ss_pred ceEEEECCCC--chHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCCCCCCCeeEEEeccccccccc
Q 011964 255 RTILDIGCGY--GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (474)
Q Consensus 255 ~~VLDIGCGt--G~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lpf~d~sFDlVvss~~l~~~~~ 332 (474)
.+|.=||+|. |.++..+.+.+ ..++++|.+.. .+.+.+.++. . ..+...+ .....|+|+..-- . .
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~G---~~V~~~d~~~~-~~~a~~~gv~--~-~~~~~e~--~~~~aDvVilavp---~-~ 103 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQG---HTVLATSRSDY-SDIAAELGVS--F-FRDPDDF--CEEHPDVVLLCTS---I-L 103 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhCC---CEEEEEECccH-HHHHHHcCCe--e-eCCHHHH--hhCCCCEEEEecC---H-H
Confidence 6788889773 34555555544 36778888763 3455554542 1 1111111 1124688875411 1 2
Q ss_pred cHHHHHHHH-HhhcCCCc
Q 011964 333 KDGILLLEV-DRVLKPGG 349 (474)
Q Consensus 333 d~~~~L~ei-~RvLKPGG 349 (474)
....++.++ ...++||.
T Consensus 104 ~~~~vl~~l~~~~l~~~~ 121 (304)
T PLN02256 104 STEAVLRSLPLQRLKRST 121 (304)
T ss_pred HHHHHHHhhhhhccCCCC
Confidence 234567776 45577775
No 492
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=24.24 E-value=4e+02 Score=26.11 Aligned_cols=91 Identities=16% Similarity=0.127 Sum_probs=54.6
Q ss_pred ceEEEECC--CCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeeccc----CC--CCCCCCeeEEEeccc
Q 011964 255 RTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK----QL--PYPSLSFDMLHCARC 326 (474)
Q Consensus 255 ~~VLDIGC--GtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~----~L--pf~d~sFDlVvss~~ 326 (474)
.+||=.|+ +.|..+..+++.. ...++.+..+++..+.+.+.+....+...... .+ ......+|+++....
T Consensus 142 ~~vlI~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~ 219 (334)
T PTZ00354 142 QSVLIHAGASGVGTAAAQLAEKY--GAATIITTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVG 219 (334)
T ss_pred CEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCcEEEecCChhHHHHHHHHHhCCCCceEEEECCc
Confidence 56777774 5666666666552 13444467778888888766653222211100 00 012346899985421
Q ss_pred cccccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 327 l~~~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
...+.++.+.|+++|.++...
T Consensus 220 --------~~~~~~~~~~l~~~g~~i~~~ 240 (334)
T PTZ00354 220 --------GSYLSETAEVLAVDGKWIVYG 240 (334)
T ss_pred --------hHHHHHHHHHhccCCeEEEEe
Confidence 247788899999999998765
No 493
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=23.77 E-value=5.3e+02 Score=25.13 Aligned_cols=92 Identities=15% Similarity=0.141 Sum_probs=54.7
Q ss_pred ceEEEECC--CCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecc---cCC-C-CCCCCeeEEEecccc
Q 011964 255 RTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS---KQL-P-YPSLSFDMLHCARCG 327 (474)
Q Consensus 255 ~~VLDIGC--GtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~---~~L-p-f~d~sFDlVvss~~l 327 (474)
.+||=.|+ +.|..+..+++.. ...++.++.+++..+.+++.+....+...+. ..+ . .....+|+|+....
T Consensus 144 ~~vlI~g~~~~~g~~~~~la~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g- 220 (324)
T cd08244 144 DVVLVTAAAGGLGSLLVQLAKAA--GATVVGAAGGPAKTALVRALGADVAVDYTRPDWPDQVREALGGGGVTVVLDGVG- 220 (324)
T ss_pred CEEEEEcCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHcCCCCceEEEECCC-
Confidence 56777774 4555666666552 2457777888888888776665322211110 000 0 22346999985421
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
...+.+..+.|+++|.++....
T Consensus 221 -------~~~~~~~~~~l~~~g~~v~~g~ 242 (324)
T cd08244 221 -------GAIGRAALALLAPGGRFLTYGW 242 (324)
T ss_pred -------hHhHHHHHHHhccCcEEEEEec
Confidence 1245788899999999997654
No 494
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=23.42 E-value=3.2e+02 Score=27.16 Aligned_cols=91 Identities=14% Similarity=0.148 Sum_probs=52.7
Q ss_pred ceEEEECCC-CchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccC----C-CCCCCCeeEE-Eecccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ----L-PYPSLSFDML-HCARCG 327 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~----L-pf~d~sFDlV-vss~~l 327 (474)
.+||=.|+| .|..+..+++.. ....++.++.+++..+.+++.+....+...+... + .... .+|.+ ++..
T Consensus 164 ~~vlV~g~g~vG~~~~~la~~~-~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~-~~d~vi~~~~-- 239 (338)
T PRK09422 164 QWIAIYGAGGLGNLALQYAKNV-FNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTG-GAHAAVVTAV-- 239 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHh-CCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHHhcC-CCcEEEEeCC--
Confidence 577777853 344555555531 1246788888888888887766533222111001 0 0111 36743 3321
Q ss_pred ccccccHHHHHHHHHhhcCCCcEEEEEe
Q 011964 328 VDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (474)
Q Consensus 328 ~~~~~d~~~~L~ei~RvLKPGG~lvis~ 355 (474)
. ...+.+..+.|+++|.++...
T Consensus 240 -----~-~~~~~~~~~~l~~~G~~v~~g 261 (338)
T PRK09422 240 -----A-KAAFNQAVDAVRAGGRVVAVG 261 (338)
T ss_pred -----C-HHHHHHHHHhccCCCEEEEEe
Confidence 1 347889999999999999765
No 495
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=23.39 E-value=2.2e+02 Score=21.77 Aligned_cols=19 Identities=11% Similarity=-0.001 Sum_probs=15.9
Q ss_pred HHHHHHHhhcCCCcEEEEE
Q 011964 336 ILLLEVDRVLKPGGYFVWT 354 (474)
Q Consensus 336 ~~L~ei~RvLKPGG~lvis 354 (474)
.-++++.+.++.||.+++.
T Consensus 51 ~~~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 51 EEAEALLEWVEAGNTLVLA 69 (70)
T ss_pred HHHHHHHHHHHcCCEEEEe
Confidence 4677888888999999986
No 496
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=23.07 E-value=3.5e+02 Score=26.51 Aligned_cols=92 Identities=15% Similarity=0.146 Sum_probs=54.5
Q ss_pred ceEEEECC--CCchHHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeeccc-C-C-CCCCCCeeEEEecccccc
Q 011964 255 RTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK-Q-L-PYPSLSFDMLHCARCGVD 329 (474)
Q Consensus 255 ~~VLDIGC--GtG~~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~-~-L-pf~d~sFDlVvss~~l~~ 329 (474)
.+||=.|+ +.|..+..+++.. ...++..+.+++..+.+++.+....+..-+.. . . -...+.+|+|+-...
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~--- 222 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKL--GYTVVALTGKEEQADYLKSLGASEVLDREDLLDESKKPLLKARWAGAIDTVG--- 222 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhcCCcEEEcchhHHHHHHHHhcCCCccEEEECCc---
Confidence 46777775 4555555566542 23577778888888888776653222111100 0 0 012235888874321
Q ss_pred ccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 330 WDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 330 ~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
...+.+..+.|+++|.++....
T Consensus 223 -----~~~~~~~~~~l~~~g~~v~~g~ 244 (325)
T cd05280 223 -----GDVLANLLKQTKYGGVVASCGN 244 (325)
T ss_pred -----hHHHHHHHHhhcCCCEEEEEec
Confidence 2368889999999999987653
No 497
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=22.59 E-value=5.6e+02 Score=26.21 Aligned_cols=98 Identities=16% Similarity=0.094 Sum_probs=55.7
Q ss_pred ceEEEECCC-CchHHHHhhhc-CCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCC-----CCCCCCeeEEEecccc
Q 011964 255 RTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARCG 327 (474)
Q Consensus 255 ~~VLDIGCG-tG~~~~~La~~-g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~L-----pf~d~sFDlVvss~~l 327 (474)
.+||=.|+| .|..+..+++. |. ..++.+|.++...+.+++.+.. .+ ....... .+..+.+|+|+-....
T Consensus 178 ~~vlI~g~g~vg~~~~~~a~~~G~--~~vi~~~~~~~~~~~~~~~g~~-~v-~~~~~~~~~~i~~~~~~~~d~v~d~~g~ 253 (375)
T cd08282 178 DTVAVFGAGPVGLMAAYSAILRGA--SRVYVVDHVPERLDLAESIGAI-PI-DFSDGDPVEQILGLEPGGVDRAVDCVGY 253 (375)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHcCCe-Ee-ccCcccHHHHHHHhhCCCCCEEEECCCC
Confidence 566667775 34444445543 32 2566788888888888876642 11 1110110 1122458988854221
Q ss_pred c----cccccHHHHHHHHHhhcCCCcEEEEEeC
Q 011964 328 V----DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (474)
Q Consensus 328 ~----~~~~d~~~~L~ei~RvLKPGG~lvis~~ 356 (474)
. .+..+....+.+..++|+++|.++....
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~ 286 (375)
T cd08282 254 EARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGV 286 (375)
T ss_pred cccccccccchHHHHHHHHHHhhcCcEEEEEec
Confidence 1 1111234578899999999999976654
No 498
>COG4920 Predicted membrane protein [Function unknown]
Probab=22.45 E-value=40 Score=32.57 Aligned_cols=67 Identities=16% Similarity=0.139 Sum_probs=39.0
Q ss_pred ccccccCCCCCCchhHHHHHHHHHHHHHHHHhhcCccceeeeeccCCCCcccccceechhhhhhHHHhhh
Q 011964 44 SYLALSSGTPRSRQNFTMLFLKFSLIAIVFLALTGSFWWTISISTSSRGHIYHGYRRLQEQLVSDLWDIG 113 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yr~~~~~~~~~~~~~~ 113 (474)
+|+++...-|+..+.+++|.+.+.+++-.|.++- |.-+ .-.-.|+++|.|+-+.|.||.+..|..-.
T Consensus 19 lfSlvlsffp~~f~tf~ilyilf~~glsiVm~~R-Snp~--l~~~~s~~eI~~aR~LyEEK~a~eL~~kD 85 (249)
T COG4920 19 LFSLVLSFFPAEFFTFLILYILFFFGLSIVMGLR-SNPY--LKGVVSAQEISRARPLYEEKEANELLEKD 85 (249)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhc-cCcc--cccccCHHHHhhcchhHhhhhhHHHHHhh
Confidence 3444445556666655555555555444444433 2100 11245678999999999999887776543
No 499
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=22.40 E-value=1.6e+02 Score=26.32 Aligned_cols=86 Identities=13% Similarity=0.181 Sum_probs=42.9
Q ss_pred ceEEEECCCCch-HHHHhhhcCCceeEEEEecCCHHHHHHHHHcCCCcEEEeecccCCC---CCCCCeeEEEeccccccc
Q 011964 255 RTILDIGCGYGS-FGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP---YPSLSFDMLHCARCGVDW 330 (474)
Q Consensus 255 ~~VLDIGCGtG~-~~~~La~~g~~~~~v~giD~s~~~l~~A~erg~~~~~~~~d~~~Lp---f~d~sFDlVvss~~l~~~ 330 (474)
++|+|||-|.=. .+..|.++| ..++++|+.+. .+. .|++...- |..+-. + ...|+|.+...--
T Consensus 15 ~kiVEVGiG~~~~vA~~L~~~G---~dV~~tDi~~~---~a~-~g~~~v~D--Dif~P~l~iY--~~a~lIYSiRPP~-- 81 (127)
T PF03686_consen 15 GKIVEVGIGFNPEVAKKLKERG---FDVIATDINPR---KAP-EGVNFVVD--DIFNPNLEIY--EGADLIYSIRPPP-- 81 (127)
T ss_dssp SEEEEET-TT--HHHHHHHHHS----EEEEE-SS-S--------STTEE-----SSS--HHHH--TTEEEEEEES--T--
T ss_pred CcEEEECcCCCHHHHHHHHHcC---CcEEEEECccc---ccc-cCcceeee--cccCCCHHHh--cCCcEEEEeCCCh--
Confidence 589999999765 455566666 58899999987 233 45544433 332211 2 2589999876532
Q ss_pred cccHHHHHHHHHhhcCCCcEEEEEeCC
Q 011964 331 DQKDGILLLEVDRVLKPGGYFVWTSPL 357 (474)
Q Consensus 331 ~~d~~~~L~ei~RvLKPGG~lvis~~~ 357 (474)
+....+.++.+-+ |.-++|....
T Consensus 82 --El~~~il~lA~~v--~adlii~pL~ 104 (127)
T PF03686_consen 82 --ELQPPILELAKKV--GADLIIRPLG 104 (127)
T ss_dssp --TSHHHHHHHHHHH--T-EEEEE-BT
T ss_pred --HHhHHHHHHHHHh--CCCEEEECCC
Confidence 3344555555543 5667776554
No 500
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.12 E-value=4.1e+02 Score=26.34 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=41.8
Q ss_pred CCceEEEECCCCchHHHHhhhc----CCceeEEEEe-cCCHHHHHHHHHcCCCcEEEee---------cccCCCCCCCCe
Q 011964 253 GVRTILDIGCGYGSFGAHLFSK----ELLTMCIANY-EASGSQVQLTLERGLPAMIGSF---------ASKQLPYPSLSF 318 (474)
Q Consensus 253 ~~~~VLDIGCGtG~~~~~La~~----g~~~~~v~gi-D~s~~~l~~A~erg~~~~~~~~---------d~~~Lpf~d~sF 318 (474)
.+..||=.||-.|..+..|+.. |+ .|.+. ---+.|-+.+.+.++...-.+. ..+-..+++++.
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~---~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkl 82 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGY---LVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKL 82 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCe---EEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCce
Confidence 3468999999999988777654 54 33332 2334577777666653321111 111124688899
Q ss_pred eEEEec
Q 011964 319 DMLHCA 324 (474)
Q Consensus 319 DlVvss 324 (474)
|+.+-+
T Consensus 83 d~L~NN 88 (289)
T KOG1209|consen 83 DLLYNN 88 (289)
T ss_pred EEEEcC
Confidence 998854
Done!