BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011965
(474 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 130/257 (50%), Positives = 172/257 (66%), Gaps = 8/257 (3%)
Query: 36 ADRVRDLPGQPKVEFKHYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGCSS 95
ADR+ LPGQP V+F Y+GY+ + ++LFY EA + PLVLWLNGGPGCSS
Sbjct: 8 ADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 67
Query: 96 IAYGAAQELGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLGDQ 155
+AYGA++ELG F V G+ L N+Y WNK AN+LFL++P GVGFSYTN S D++ GD
Sbjct: 68 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 127
Query: 156 VTANDSYAFLIGWFKRFPNFKSHDFYIAGESYAGHYVPQLAELIHERNIRAGKDSFINLK 215
TA+DSYAFL WF+RFP++K DFYIAGESYAGHYVP+L++L+H K+ INLK
Sbjct: 128 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRS-----KNPVINLK 182
Query: 216 GFMIGNAVINDPTDTKGLVDYAWSHAIISDKLYKDISKECDFGQSMIRSN--CNDHIRGF 273
GFM+GN +I+D D G ++ W+H I+SD Y+ + + C S I + C+
Sbjct: 183 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC-LHDSFIHPSPACDAATDVA 241
Query: 274 VEAYAEIDIYSIYSPVC 290
ID+YS+Y+PVC
Sbjct: 242 TAEQGNIDMYSLYTPVC 258
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 130/257 (50%), Positives = 172/257 (66%), Gaps = 8/257 (3%)
Query: 36 ADRVRDLPGQPKVEFKHYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGCSS 95
ADR+ LPGQP V+F Y+GY+ + ++LFY EA + PLVLWLNGGPGCSS
Sbjct: 3 ADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 62
Query: 96 IAYGAAQELGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLGDQ 155
+AYGA++ELG F V G+ L N+Y WNK AN+LFL++P GVGFSYTN S D++ GD
Sbjct: 63 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 122
Query: 156 VTANDSYAFLIGWFKRFPNFKSHDFYIAGESYAGHYVPQLAELIHERNIRAGKDSFINLK 215
TA+DSYAFL WF+RFP++K DFYIAGESYAGHYVP+L++L+H K+ INLK
Sbjct: 123 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHR-----SKNPVINLK 177
Query: 216 GFMIGNAVINDPTDTKGLVDYAWSHAIISDKLYKDISKECDFGQSMIRSN--CNDHIRGF 273
GFM+GN +I+D D G ++ W+H I+SD Y+ + + C S I + C+
Sbjct: 178 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC-LHDSFIHPSPACDAATDVA 236
Query: 274 VEAYAEIDIYSIYSPVC 290
ID+YS+Y+PVC
Sbjct: 237 TAEQGNIDMYSLYTPVC 253
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 130/257 (50%), Positives = 172/257 (66%), Gaps = 8/257 (3%)
Query: 36 ADRVRDLPGQPKVEFKHYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGCSS 95
ADR+ LPGQP V+F Y+GY+ + ++LFY EA + PLVLWLNGGPGCSS
Sbjct: 4 ADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 63
Query: 96 IAYGAAQELGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLGDQ 155
+AYGA++ELG F V G+ L N+Y WNK AN+LFL++P GVGFSYTN S D++ GD
Sbjct: 64 VAYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 123
Query: 156 VTANDSYAFLIGWFKRFPNFKSHDFYIAGESYAGHYVPQLAELIHERNIRAGKDSFINLK 215
TA+DSYAFL WF+RFP++K DFYIAGESYAGHYVP+L++L+H K+ INLK
Sbjct: 124 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRS-----KNPVINLK 178
Query: 216 GFMIGNAVINDPTDTKGLVDYAWSHAIISDKLYKDISKECDFGQSMIRSN--CNDHIRGF 273
GFM+GN +I+D D G ++ W+H I+SD Y+ + + C S I + C+
Sbjct: 179 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC-LHDSFIHPSPACDAATDVA 237
Query: 274 VEAYAEIDIYSIYSPVC 290
ID+YS+Y+PVC
Sbjct: 238 TAEQGNIDMYSLYTPVC 254
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 265 bits (678), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 130/257 (50%), Positives = 172/257 (66%), Gaps = 8/257 (3%)
Query: 36 ADRVRDLPGQPKVEFKHYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGCSS 95
ADR+ LPGQP V+F Y+GY+ + ++LFY EA + PLVLWLNGGPGCSS
Sbjct: 8 ADRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 67
Query: 96 IAYGAAQELGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLGDQ 155
+AYGA++ELG F V G+ L N+Y WNK AN+LFL++P GVGFSYTN S D++ GD
Sbjct: 68 VAYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDN 127
Query: 156 VTANDSYAFLIGWFKRFPNFKSHDFYIAGESYAGHYVPQLAELIHERNIRAGKDSFINLK 215
TA+DSYAFL WF+RFP++K DFYIAGESYAGHYVP+L++L+H K+ INLK
Sbjct: 128 RTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRS-----KNPVINLK 182
Query: 216 GFMIGNAVINDPTDTKGLVDYAWSHAIISDKLYKDISKECDFGQSMIRSN--CNDHIRGF 273
GFM+GN +I+D D G ++ W+H I+SD Y+ + + C S I + C+
Sbjct: 183 GFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC-LHDSFIHPSPACDAATDVA 241
Query: 274 VEAYAEIDIYSIYSPVC 290
ID+YS+Y+PVC
Sbjct: 242 TAEQGNIDMYSLYTPVC 258
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 161/265 (60%), Gaps = 11/265 (4%)
Query: 30 QTTEADADRVRDLPGQPK-VEFKHYAGYVKLRPNDHKALFYWFFEAQKGVSSKP-LVLWL 87
Q + + DR+ LPGQP V F Y GYV + N+ +AL+YWF EA + LVLWL
Sbjct: 1 QLQQQEDDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWL 60
Query: 88 NGGPGCSSIAYGAAQELGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSE 147
NGGPGCSSI GA QELG F V NG L N+Y+WNKAAN+LF E+P GVGFSY+N S
Sbjct: 61 NGGPGCSSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSS 120
Query: 148 DLHKLGDQVTANDSYAFLIGWFKRFPNFKSHDFYIAGESYAGHYVPQLAELIHERNIRAG 207
DL +GD A D+Y FL+ WF+RFP++ +FYIAGES GH++PQL+++++ RN
Sbjct: 121 DL-SMGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVY-RN--RN 174
Query: 208 KDSFINLKGFMIGNAVINDPTDTKGLVDYAWSHAIISDKLYKDISKECDFGQSMIRSN-- 265
FIN +G ++ + + ND D G+ + W H +ISD+ K C G S +
Sbjct: 175 NSPFINFQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCP-GTSFMHPTPE 233
Query: 266 CNDHIRGFVEAYAEIDIYSIYSPVC 290
C + + I+ Y+IY+P C
Sbjct: 234 CTEVWNKALAEQGNINPYTIYTPTC 258
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 204 bits (519), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 140/471 (29%), Positives = 237/471 (50%), Gaps = 65/471 (13%)
Query: 35 DADRVRDLPGQPKV-EFKHYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGC 93
D D ++ LPG K F+ Y+GY+K + H L YWF E+QK + P+VLWLNGGPGC
Sbjct: 3 DQDEIQRLPGLAKQPSFRQYSGYLKSSGSKH--LHYWFVESQKDPENSPVVLWLNGGPGC 60
Query: 94 SSIAYGAAQELGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLG 153
SS+ G E GPFLV +G L++N YSWN AN+L+LE+P GVGFSY++ + +
Sbjct: 61 SSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSD--DKFYATN 117
Query: 154 DQVTANDSYAFLIGWFKRFPNFKSHDFYIAGESYAGHYVPQLAELIHERNIRAGKDSFIN 213
D A ++ L +F+ FP +K++ ++ GESYAG Y+P LA L+ + D +N
Sbjct: 118 DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQ-------DPSMN 170
Query: 214 LKGFMIGNAVINDPTDTKGLVDYAWSHAIISDKLYKDISKECDFGQSMIRSNCNDHIRGF 273
L+G +GN + + + LV +A+ H ++ ++L+ + C ++ CN +
Sbjct: 171 LQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHC-----CSQNKCNFYDNKD 225
Query: 274 VEAYAE------------IDIYSIYSPVCLDSLDGKAPPKLMVAPHLLTQHDL------- 314
+E ++IY++Y+P G P + DL
Sbjct: 226 LECVTNLQEVARIVGNSGLNIYNLYAPCA-----GGVPSHFRYEKDTVVVQDLGNIFTRL 280
Query: 315 -----WHR--LPSGYD-----PCAEDYVMK-FFNREDVQRALHANITKLSYPYTTCSGVI 361
WH+ L SG PC + N V++AL NI + + C+ ++
Sbjct: 281 PLKRMWHQALLRSGDKVRMDPPCTNTTAASTYLNNPYVRKAL--NIPEQLPQWDMCNFLV 338
Query: 362 S-KWNDSAETVLPIIQKLLNA-GLRIWVYSGDTDGRVPVTSTRYSINKMGLKIKEEWRAW 419
+ ++ ++ KLL++ +I +Y+GD D + ++ + K++ + R W
Sbjct: 339 NLQYRRLYRSMNSQYLKLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPW 398
Query: 420 FHKH-----QVAGWVETYEKGLTLVTVRGAGHQVPAFAPAQSLSLFTKFLS 465
K+ Q+AG+V+ + + +T++GAGH VP P + ++F++FL+
Sbjct: 399 LVKYGDSGEQIAGFVKEFSH-IAFLTIKGAGHMVPTDKPLAAFTMFSRFLN 448
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 168 bits (426), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 159/301 (52%), Gaps = 38/301 (12%)
Query: 35 DADRVRDLPGQPKV-EFKHYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGC 93
D D ++ LPG K F+ Y+GY+K + H L YWF E+QK + P+VLWLNGGPGC
Sbjct: 5 DQDEIQRLPGLAKQPSFRQYSGYLKGSGSKH--LHYWFVESQKDPENSPVVLWLNGGPGC 62
Query: 94 SSIAYGAAQELGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLG 153
SS+ G E GPFLV +G L++N YSWN AN+L+LE+P GVGFSY++ + +
Sbjct: 63 SSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSD--DKFYATN 119
Query: 154 DQVTANDSYAFLIGWFKRFPNFKSHDFYIAGESYAGHYVPQLAELIHERNIRAGKDSFIN 213
D A ++ L +F+ FP +K++ ++ GESYAG Y+P LA L+ + D +N
Sbjct: 120 DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQ-------DPSMN 172
Query: 214 LKGFMIGNAVINDPTDTKGLVDYAWSHAIISDKLYKDISKECDFGQSMIRSNCNDHIRGF 273
L+G +GN + + + LV +A+ H ++ ++L+ + C ++ CN +
Sbjct: 173 LQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHC-----CSQNKCNFYDNKD 227
Query: 274 VEAYAE------------IDIYSIYSPVCLDSLDGKAPPKLMVAPHLLTQHDL---WHRL 318
+E ++IY++Y+P G P + DL + RL
Sbjct: 228 LECVTNLQEVARIVGNSGLNIYNLYAPCA-----GGVPSHFRYEKDTVVVQDLGNIFTRL 282
Query: 319 P 319
P
Sbjct: 283 P 283
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 103/151 (68%), Gaps = 3/151 (1%)
Query: 322 YDPCAEDYVMKFFNREDVQRALHANIT-KLSYPYTTCSGVI-SKWNDSAETVLPIIQKLL 379
YDPC E Y ++NR DVQ ALHAN+T ++Y + TCS I + W+D+ ++LPI ++L+
Sbjct: 4 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 63
Query: 380 NAGLRIWVYSGDTDGRVPVTSTRYSINKMGLKIKEEWRAWFHKHQVAGWVETYEKGLTLV 439
AGLRIWV+SGDTD VP+T+TRYSI +GL W W+ +V GW + Y KGLTLV
Sbjct: 64 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVY-KGLTLV 122
Query: 440 TVRGAGHQVPAFAPAQSLSLFTKFLSAATLP 470
+VRGAGH+VP P Q+L LF FL +P
Sbjct: 123 SVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 153
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 103/151 (68%), Gaps = 3/151 (1%)
Query: 322 YDPCAEDYVMKFFNREDVQRALHANIT-KLSYPYTTCSGVI-SKWNDSAETVLPIIQKLL 379
YDPC E Y ++NR DVQ ALHAN+T ++Y + TCS I + W+D+ ++LPI ++L+
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 380 NAGLRIWVYSGDTDGRVPVTSTRYSINKMGLKIKEEWRAWFHKHQVAGWVETYEKGLTLV 439
AGLRIWV+SGDTD VP+T+TRYSI +GL W W+ +V GW + Y KGLTLV
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVY-KGLTLV 120
Query: 440 TVRGAGHQVPAFAPAQSLSLFTKFLSAATLP 470
+VRGAGH+VP P Q+L LF FL +P
Sbjct: 121 SVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 103/151 (68%), Gaps = 3/151 (1%)
Query: 322 YDPCAEDYVMKFFNREDVQRALHANIT-KLSYPYTTCSGVI-SKWNDSAETVLPIIQKLL 379
YDPC E Y ++NR DVQ ALHAN+T ++Y + TCS I + W+D+ ++LPI ++L+
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 380 NAGLRIWVYSGDTDGRVPVTSTRYSINKMGLKIKEEWRAWFHKHQVAGWVETYEKGLTLV 439
AGLRIWV+SGDTD VP+T+TRYSI +GL W W+ +V GW + Y KGLTLV
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVY-KGLTLV 120
Query: 440 TVRGAGHQVPAFAPAQSLSLFTKFLSAATLP 470
+VRGAGH+VP P Q+L LF FL +P
Sbjct: 121 SVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/151 (51%), Positives = 103/151 (68%), Gaps = 3/151 (1%)
Query: 322 YDPCAEDYVMKFFNREDVQRALHANIT-KLSYPYTTCSGVI-SKWNDSAETVLPIIQKLL 379
YDPC E Y ++NR DVQ ALHAN+T ++Y + TCS I + W+D+ ++LPI ++L+
Sbjct: 2 YDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYRELI 61
Query: 380 NAGLRIWVYSGDTDGRVPVTSTRYSINKMGLKIKEEWRAWFHKHQVAGWVETYEKGLTLV 439
AGLRIWV+SGDTD VP+T+TRYSI +GL W W+ +V GW + Y KGLTLV
Sbjct: 62 AAGLRIWVFSGDTDAVVPLTATRYSIGALGLPTTTSWYPWYDDQEVGGWSQVY-KGLTLV 120
Query: 440 TVRGAGHQVPAFAPAQSLSLFTKFLSAATLP 470
+VRGAGH+VP P Q+L LF FL +P
Sbjct: 121 SVRGAGHEVPLHRPRQALVLFQYFLQGKPMP 151
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 145 bits (365), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 100/155 (64%), Gaps = 6/155 (3%)
Query: 322 YDPCAEDYVMKFFNREDVQRALHANITKL-SYPYTTCSGVI-SKWNDSAETVLPIIQKLL 379
YDPCA + + N +VQ ALHAN++ + YP+T CS I +W +A+ +LP+ ++L+
Sbjct: 4 YDPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYRELI 63
Query: 380 NAGLRIWVYSGDTDGRVPVTSTRYSINKMGLKIKEEWRAWFH---KHQVAGWVETYEKGL 436
AGLR+WVYSGDTD VPV+STR S+ + L +K W W+ + +V GW YE GL
Sbjct: 64 QAGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVGGWSVQYE-GL 122
Query: 437 TLVTVRGAGHQVPAFAPAQSLSLFTKFLSAATLPS 471
T VTVRGAGH VP PAQ+ LF +FL +P+
Sbjct: 123 TYVTVRGAGHLVPVHRPAQAFLLFKQFLKGEPMPA 157
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 131/434 (30%), Positives = 204/434 (47%), Gaps = 55/434 (12%)
Query: 52 HYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGCSSIAYGAAQELGPFLVGG 111
Y GY+ + D K F+W FE++ + P++LWLNGGPGCSS+ G ELGP +G
Sbjct: 16 QYTGYLDVEDED-KHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFELGPSSIGP 73
Query: 112 NGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLGDQVTA-NDSYAFLIGWFK 170
+ + N YSWN A ++FL+ PV VGFSY+ +S + + V A D Y FL +F
Sbjct: 74 DLKPIG-NPYSWNSNATVIFLDQPVNVGFSYSGSS----GVSNTVAAGKDVYNFLELFFD 128
Query: 171 RFPNF--KSHDFYIAGESYAGHYVPQLAELIHERNIRAGKDSFINLKGFMIGNAVINDPT 228
+FP + K DF+IAGESYAGHY+P A I + KD NL +IGN +
Sbjct: 129 QFPEYVNKGQDFHIAGESYAGHYIPVFA-----SEILSHKDRNFNLTSVLIGNGL----- 178
Query: 229 DTKGLVDYAWSHAIISDKLYKDI---SKECDFGQSMIRSNCNDHIRGFVEAYAEIDIYSI 285
T L Y + + + + S+EC + + + G +E+ D S+
Sbjct: 179 -TDPLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSL-----ERCLGLIESC--YDSQSV 230
Query: 286 YSPVCLDSLDGKAPPKLMVAPHLLTQHDLW--HRLPSGYDPCAEDY--VMKFFNREDVQR 341
+S V A +AP+ T +++ + G + C + + N++ V+
Sbjct: 231 WSCVPATIYCNNA----QLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKE 286
Query: 342 ALHANITKLSYPYTTCSGVISK----WNDSAETVLPIIQKLLNAGLRIWVYSGDTDGRVP 397
A+ A + Y +C+ I++ D + + LLN L I VY+GD D
Sbjct: 287 AVGAEVDH----YESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICN 342
Query: 398 VTSTRYSINKMGLKIKEEW-----RAWFHK--HQVAGWVETYEKGLTLVTVRGAGHQVPA 450
+ + + K EE+ R W +VAG V++Y K T + V GH VP
Sbjct: 343 WLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSY-KHFTYLRVFNGGHMVPF 401
Query: 451 FAPAQSLSLFTKFL 464
P +LS+ +++
Sbjct: 402 DVPENALSMVNEWI 415
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 129/434 (29%), Positives = 202/434 (46%), Gaps = 55/434 (12%)
Query: 52 HYAGYVKLRPNDHKALFYWFFEAQKGVSSKPLVLWLNGGPGCSSIAYGAAQELGPFLVGG 111
Y GY+ + D K F+W FE++ + P++LWLNGGPGCSS+ G LGP +G
Sbjct: 16 QYTGYLDVEDED-KHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFALGPSSIGP 73
Query: 112 NGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSEDLHKLGDQVTA-NDSYAFLIGWFK 170
+ + N YSWN A ++FL+ PV VGFSY+ +S + + V A D Y FL +F
Sbjct: 74 DLKPIG-NPYSWNSNATVIFLDQPVNVGFSYSGSS----GVSNTVAAGKDVYNFLELFFD 128
Query: 171 RFPNF--KSHDFYIAGESYAGHYVPQLAELIHERNIRAGKDSFINLKGFMIGNAVINDPT 228
+FP + K DF+IAG SYAGHY+P A I + KD NL +IGN +
Sbjct: 129 QFPEYVNKGQDFHIAGASYAGHYIPVFA-----SEILSHKDRNFNLTSVLIGNGL----- 178
Query: 229 DTKGLVDYAWSHAIISDKLYKDI---SKECDFGQSMIRSNCNDHIRGFVEAYAEIDIYSI 285
T L Y + + + + S+EC + + + G +E+ D S+
Sbjct: 179 -TDPLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSL-----ERCLGLIESC--YDSQSV 230
Query: 286 YSPVCLDSLDGKAPPKLMVAPHLLTQHDLW--HRLPSGYDPCAEDY--VMKFFNREDVQR 341
+S V A +AP+ T +++ + G + C + + N++ V+
Sbjct: 231 WSCVPATIYCNNA----QLAPYQRTGRNVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKE 286
Query: 342 ALHANITKLSYPYTTCSGVISK----WNDSAETVLPIIQKLLNAGLRIWVYSGDTDGRVP 397
A+ A + Y +C+ I++ D + + LLN L I VY+GD D
Sbjct: 287 AVGAEVDH----YESCNFDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICN 342
Query: 398 VTSTRYSINKMGLKIKEEW-----RAWFHK--HQVAGWVETYEKGLTLVTVRGAGHQVPA 450
+ + + K EE+ R W +VAG V++Y K T + V GH VP
Sbjct: 343 WLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEVKSY-KHFTYLRVFNGGHMVPF 401
Query: 451 FAPAQSLSLFTKFL 464
P +LS+ +++
Sbjct: 402 DVPENALSMVNEWI 415
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 120/436 (27%), Positives = 196/436 (44%), Gaps = 53/436 (12%)
Query: 53 YAGYVKLRPNDHKA-------LFYWFF--EAQKGVSSKPLVLWLNGGPGCSSIAYGAAQE 103
+AG++ LR D F+W F G +PL++WLNGGPGCSS+ GA E
Sbjct: 30 HAGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMD-GALVE 88
Query: 104 LGPFLVGGNGSRLKFNKYSWNKAANMLFLEAPVGVGFSYTNNSE----DLHKLGDQVTAN 159
GPF V +G +L N+ SW ++LF++ P G GFS N + D +K + +
Sbjct: 89 SGPFRVNSDG-KLYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDLEDV 147
Query: 160 DSY--AFLIGWFKRFPNFKSHDFYIAGESYAGHYVPQLAELI--HERNIRAGKDSFINLK 215
+ FL +FK FP + ++GESYAG Y+P A I H + + D++ +LK
Sbjct: 148 TKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTY-DLK 206
Query: 216 GFMIGNAVINDPTDTKGLVDYAWSHAII--SDKLYKDISKECDFGQSMIRSNCNDHIRGF 273
+IGN I+ T + + +A +I S+ +K ++ + Q++I S D F
Sbjct: 207 ALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPNFKHLTNAHENCQNLINSASTDEAAHF 266
Query: 274 VEAYAEIDIYSIYSPVCLDSLDGKAPPKLMVAPHLLTQHDLWHRLPSGYDPCAED----- 328
E + + S S G A L ++ L Y C +
Sbjct: 267 SYQECENILNLLLSYTRESSQKGTA--------DCLNMYNF--NLKDSYPSCGMNWPKDI 316
Query: 329 -YVMKFFNREDVQRALHANITKLSYPYTTCSGVISKW-NDSAETVLPIIQKLLNAGLRIW 386
+V KFF+ V +LH + K+ + + V +K N ++ + ++ LL +G+ I
Sbjct: 317 SFVSKFFSTPGVIDSLHLDSDKIDHWKECTNSVGTKLSNPISKPSIHLLPGLLESGIEIV 376
Query: 387 VYSGDTDGRVPVTSTRYSINKM------GLKIKEEWRAWFHK-------HQVAGWVETYE 433
+++GD D +I+ + G W HK + +G+V+ Y+
Sbjct: 377 LFNGDKDLICNNKGVLDTIDNLKWGGIKGFSDDAVSFDWIHKSKSTDDSEEFSGYVK-YD 435
Query: 434 KGLTLVTVRGAGHQVP 449
+ LT V+V A H VP
Sbjct: 436 RNLTFVSVYNASHMVP 451
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 377 KLLNA-GLRIWVYSGDTDGRVPVTSTRYSINKMGLKIKEEWRAWFHKH-----QVAGWVE 430
KLL++ +I +Y+GD D + ++ + K++ + R W K+ Q+AG+V+
Sbjct: 57 KLLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKMEVQRRPWLVKYGDSGEQIAGFVK 116
Query: 431 TYEKGLTLVTVRGAGHQVPAFAPAQSLSLFTKFLS 465
+ + +T++GAGH VP P + ++F++FL+
Sbjct: 117 EFSH-IAFLTIKGAGHMVPTDKPLAAFTMFSRFLN 150
>pdb|2HWK|A Chain A, Crystal Structure Of Venezuelan Equine Encephalitis
Alphavirus Nsp2 Protease Domain
Length = 320
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 80 SKPLVLWLNGGPGCSSIAYGAAQELGPFLVGGNGSRLKFNKYSWNKAA----NMLFLEAP 135
+K L LN G C SI YG A ++G + KF++ K++ +LF
Sbjct: 237 TKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQFKFSRVCKPKSSLEETEVLF---- 292
Query: 136 VGVGFSYTNNSEDLHKLGDQVT 157
V +G+ + + +KL +T
Sbjct: 293 VFIGYDRKARTHNPYKLSSTLT 314
>pdb|2X8X|X Chain X, Structure Of The N-Terminal Domain Of Omp85 From The
Thermophilic Cyanobacterium Thermosynechococcus
Elongatus
Length = 235
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 191 YVPQLAELIHERNIRAGKD---SFINLKGFMIGNAVINDPTDTKGLVDYAWSHAIISDKL 247
+ PQ+ ++ R ++AG + +F G+++G V D G+V + ++
Sbjct: 99 FAPQIGRTLNLRELQAGIEKINTFYRDNGYILGQVVGTPQVDPDGVVTLQVAEGVVEQVT 158
Query: 248 YKDISKECD 256
Y+ ++KE +
Sbjct: 159 YRFLNKEGE 167
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 383 LRIWVYSGDTDGRVPVTSTRYSINKMG-----LKIKEEWRAWFHKH---QVAGWVETYE 433
+ IWV+ + D VPV ++R + K+ ++ E + + KH W+ TYE
Sbjct: 309 IPIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTEYEKGFMEKHGWDPHGSWIPTYE 367
>pdb|2A3N|A Chain A, Crystal Structure Of A Putative
Glucosamine-fructose-6-phosphate Aminotransferase
(stm4540.s) From Salmonella Typhimurium Lt2 At 1.35 A
Resolution
Length = 355
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 191 YVPQLAELIHERNIRAGKDSFI 212
YV Q AELIH+ N R KDS +
Sbjct: 85 YVEQAAELIHKGNKRLNKDSVV 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,175,764
Number of Sequences: 62578
Number of extensions: 675933
Number of successful extensions: 1651
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1590
Number of HSP's gapped (non-prelim): 26
length of query: 474
length of database: 14,973,337
effective HSP length: 102
effective length of query: 372
effective length of database: 8,590,381
effective search space: 3195621732
effective search space used: 3195621732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)