Query 011966
Match_columns 474
No_of_seqs 160 out of 1598
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 07:11:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03074 auxin influx permease 100.0 1.2E-72 2.6E-77 579.7 37.0 470 1-470 1-472 (473)
2 KOG1304 Amino acid transporter 100.0 1.1E-58 2.4E-63 457.4 31.0 388 39-449 42-449 (449)
3 KOG1303 Amino acid transporter 100.0 7.7E-56 1.7E-60 445.0 30.0 388 39-451 33-436 (437)
4 PTZ00206 amino acid transporte 100.0 7.8E-56 1.7E-60 457.2 30.0 382 41-450 57-465 (467)
5 PF01490 Aa_trans: Transmembra 100.0 1.5E-52 3.3E-57 429.3 2.0 383 42-446 1-408 (409)
6 KOG4303 Vesicular inhibitory a 100.0 4.4E-46 9.5E-51 346.7 4.3 392 40-455 113-520 (524)
7 KOG1305 Amino acid transporter 100.0 8.8E-42 1.9E-46 341.8 25.2 376 43-452 5-408 (411)
8 COG0814 SdaC Amino acid permea 100.0 1E-30 2.2E-35 265.4 29.0 346 41-400 6-382 (415)
9 PRK10483 tryptophan permease; 99.9 1.5E-23 3.2E-28 209.8 28.7 347 40-401 7-373 (414)
10 PF03222 Trp_Tyr_perm: Tryptop 99.9 1E-22 2.2E-27 205.6 29.2 341 44-402 3-366 (394)
11 PRK09664 tryptophan permease T 99.9 4.7E-22 1E-26 198.9 26.4 336 45-401 10-374 (415)
12 PRK15132 tyrosine transporter 99.9 2.2E-21 4.8E-26 195.1 28.9 337 45-401 4-362 (403)
13 TIGR00837 araaP aromatic amino 99.9 1.7E-21 3.7E-26 197.7 23.3 336 51-402 4-360 (381)
14 PRK13629 threonine/serine tran 99.8 5.4E-18 1.2E-22 169.8 29.9 364 44-438 21-435 (443)
15 TIGR00814 stp serine transport 99.7 4.5E-16 9.8E-21 157.1 24.4 339 49-398 8-376 (397)
16 TIGR00912 2A0309 spore germina 99.4 1.1E-10 2.5E-15 117.5 23.8 338 43-402 2-355 (359)
17 PRK10249 phenylalanine transpo 99.4 2.4E-09 5.1E-14 111.4 33.8 229 42-283 21-262 (458)
18 PRK15049 L-asparagine permease 99.3 1E-08 2.2E-13 107.6 32.9 233 40-286 26-276 (499)
19 TIGR00909 2A0306 amino acid tr 99.3 1.2E-08 2.5E-13 105.4 31.8 232 42-286 3-251 (429)
20 PRK10746 putative transport pr 99.3 2.2E-08 4.8E-13 104.2 33.9 349 40-402 8-389 (461)
21 TIGR01773 GABAperm gamma-amino 99.2 3.6E-08 7.9E-13 102.5 34.4 229 40-283 10-254 (452)
22 PRK10655 potE putrescine trans 99.2 5.5E-08 1.2E-12 100.7 33.2 230 42-285 6-244 (438)
23 PRK11049 D-alanine/D-serine/gl 99.2 7.4E-08 1.6E-12 100.6 33.8 231 40-284 18-265 (469)
24 PRK10238 aromatic amino acid t 99.2 7E-08 1.5E-12 100.4 33.4 227 40-280 10-250 (456)
25 PRK10580 proY putative proline 99.1 3.3E-07 7.2E-12 95.4 35.7 229 40-282 7-251 (457)
26 PRK10644 arginine:agmatin anti 99.1 3.1E-07 6.8E-12 95.3 33.7 234 40-286 6-247 (445)
27 PRK11387 S-methylmethionine tr 99.1 3.8E-07 8.2E-12 95.3 34.2 232 41-285 13-261 (471)
28 PRK11021 putative transporter; 99.1 1.3E-07 2.7E-12 97.2 29.7 223 45-284 2-231 (410)
29 PRK10435 cadB lysine/cadaverin 99.1 2.4E-07 5.3E-12 95.8 31.4 234 41-288 4-245 (435)
30 TIGR00913 2A0310 amino acid pe 99.1 4.4E-07 9.6E-12 95.1 33.6 229 43-283 3-250 (478)
31 TIGR00905 2A0302 transporter, 99.1 5.6E-07 1.2E-11 94.1 33.5 235 41-286 6-254 (473)
32 PRK10836 lysine transporter; P 99.1 1.8E-06 3.9E-11 90.7 36.7 232 42-286 15-261 (489)
33 KOG3832 Predicted amino acid t 99.0 2.6E-09 5.6E-14 94.3 11.6 210 49-262 17-304 (319)
34 TIGR00906 2A0303 cationic amin 99.0 1.6E-07 3.4E-12 99.9 27.6 233 40-285 26-286 (557)
35 PRK10197 gamma-aminobutyrate t 99.0 8.2E-07 1.8E-11 92.1 32.0 332 54-401 4-368 (446)
36 TIGR00930 2a30 K-Cl cotranspor 99.0 2.3E-07 5.1E-12 103.5 29.4 226 44-284 78-334 (953)
37 TIGR03810 arg_ornith_anti argi 99.0 1.6E-06 3.4E-11 90.7 33.1 237 43-290 2-254 (468)
38 PF03845 Spore_permease: Spore 99.0 1.4E-07 3.1E-12 93.4 24.1 277 44-343 2-296 (320)
39 TIGR00908 2A0305 ethanolamine 99.0 2.1E-06 4.5E-11 89.0 32.4 227 41-281 6-242 (442)
40 COG1113 AnsP Gamma-aminobutyra 98.9 4.7E-07 1E-11 90.4 23.7 341 42-400 13-388 (462)
41 PF13520 AA_permease_2: Amino 98.9 1E-06 2.3E-11 90.8 27.2 233 45-292 2-248 (426)
42 TIGR00911 2A0308 L-type amino 98.9 2.2E-06 4.7E-11 90.4 27.9 236 39-287 39-292 (501)
43 KOG1287 Amino acid transporter 98.8 1.6E-06 3.4E-11 88.0 22.4 348 42-404 12-389 (479)
44 TIGR03428 ureacarb_perm permea 98.7 0.00024 5.2E-09 74.4 35.7 59 232-290 214-273 (475)
45 PRK11357 frlA putative fructos 98.6 6.4E-05 1.4E-09 78.0 29.2 232 40-284 6-249 (445)
46 COG0531 PotE Amino acid transp 98.6 0.00017 3.6E-09 75.2 31.5 63 229-291 199-262 (466)
47 COG0833 LysP Amino acid transp 98.5 0.00048 1E-08 70.7 30.8 226 42-280 44-284 (541)
48 PRK11375 allantoin permease; P 98.3 0.00027 6E-09 73.8 24.8 210 174-389 164-391 (484)
49 TIGR00907 2A0304 amino acid pe 98.3 0.0029 6.4E-08 66.4 32.8 48 233-280 219-267 (482)
50 KOG1286 Amino acid transporter 98.3 5.2E-05 1.1E-09 79.7 19.0 335 51-401 39-423 (554)
51 PRK15238 inner membrane transp 98.3 0.0041 9E-08 65.5 33.6 52 232-283 212-264 (496)
52 COG1457 CodB Purine-cytosine p 98.3 0.00042 9.2E-09 70.3 24.2 257 122-390 85-351 (442)
53 PF00324 AA_permease: Amino ac 98.2 4E-05 8.6E-10 80.4 14.9 64 229-292 198-262 (478)
54 TIGR03813 put_Glu_GABA_T putat 98.1 0.0054 1.2E-07 64.2 30.3 52 239-290 202-254 (474)
55 KOG1289 Amino acid transporter 98.1 0.0024 5.2E-08 65.6 26.2 161 237-402 258-445 (550)
56 TIGR00800 ncs1 NCS1 nucleoside 98.0 0.0031 6.7E-08 65.4 25.9 175 119-293 77-274 (442)
57 TIGR00910 2A0307_GadC glutamat 97.8 0.035 7.5E-07 58.7 29.0 47 236-282 199-246 (507)
58 TIGR02358 thia_cytX probable h 97.8 0.019 4.2E-07 58.3 26.2 256 119-388 59-321 (386)
59 COG3949 Uncharacterized membra 97.6 0.039 8.4E-07 53.5 22.5 130 49-195 8-142 (349)
60 PRK11017 codB cytosine permeas 97.5 0.036 7.8E-07 56.8 23.5 170 119-291 72-244 (404)
61 TIGR00796 livcs branched-chain 96.8 0.48 1E-05 47.8 22.9 67 52-136 3-72 (378)
62 PF00474 SSF: Sodium:solute sy 96.7 0.24 5.2E-06 50.7 20.8 138 45-197 9-149 (406)
63 PRK12488 acetate permease; Pro 96.7 1.1 2.4E-05 47.9 32.8 138 45-198 70-210 (549)
64 COG0591 PutP Na+/proline sympo 96.5 1.4 3E-05 46.4 33.9 141 46-197 42-184 (493)
65 TIGR00813 sss transporter, SSS 96.4 1.3 2.9E-05 45.3 27.6 138 45-197 6-145 (407)
66 PF02133 Transp_cyt_pur: Perme 96.3 0.027 5.9E-07 58.4 10.7 41 248-288 219-259 (440)
67 COG1953 FUI1 Cytosine/uracil/t 96.1 2.2 4.7E-05 44.1 22.9 204 183-389 185-405 (497)
68 PRK09442 panF sodium/panthothe 96.0 2.5 5.5E-05 44.3 31.9 142 45-197 44-187 (483)
69 TIGR02119 panF sodium/pantothe 95.9 2.7 5.9E-05 43.9 32.4 142 45-197 43-186 (471)
70 TIGR02711 symport_actP cation/ 94.7 7.3 0.00016 41.7 34.3 137 45-197 70-209 (549)
71 PRK15419 proline:sodium sympor 94.7 6.9 0.00015 41.3 33.0 31 45-75 43-74 (502)
72 PF02554 CstA: Carbon starvati 94.6 0.53 1.2E-05 46.7 12.1 194 41-263 49-242 (376)
73 TIGR00835 agcS amino acid carr 94.5 0.74 1.6E-05 47.1 13.2 87 44-135 47-134 (425)
74 PF01566 Nramp: Natural resist 93.9 7.8 0.00017 38.9 22.1 77 119-196 43-121 (358)
75 COG0733 Na+-dependent transpor 93.8 9 0.0002 39.2 22.3 75 191-265 167-249 (439)
76 COG1914 MntH Mn2+ and Fe2+ tra 93.1 11 0.00025 38.5 30.2 67 334-401 312-378 (416)
77 PRK09395 actP acetate permease 92.5 17 0.00037 38.8 33.0 136 45-195 72-209 (551)
78 COG4147 DhlC Predicted symport 91.2 20 0.00043 37.0 26.8 79 119-198 105-184 (529)
79 PF01235 Na_Ala_symp: Sodium:a 90.8 21 0.00046 36.5 21.6 45 42-87 17-62 (416)
80 TIGR02121 Na_Pro_sym sodium/pr 90.1 27 0.00059 36.7 34.5 31 45-75 39-70 (487)
81 PRK15015 carbon starvation pro 89.7 6.1 0.00013 42.3 13.0 96 44-151 83-178 (701)
82 PRK00701 manganese transport p 88.0 36 0.00077 35.3 29.8 21 119-139 95-115 (439)
83 TIGR03648 Na_symport_lg probab 86.9 47 0.001 35.5 33.0 31 45-75 35-66 (552)
84 COG1966 CstA Carbon starvation 86.9 11 0.00024 39.5 12.4 98 42-151 50-147 (575)
85 PF05525 Branch_AA_trans: Bran 74.0 1.1E+02 0.0024 31.5 22.3 43 46-88 5-50 (427)
86 KOG2082 K+/Cl- cotransporter K 72.8 1.6E+02 0.0034 32.6 21.8 43 51-93 122-165 (1075)
87 PRK10484 putative transporter; 72.2 1.4E+02 0.003 31.7 29.2 31 45-75 41-72 (523)
88 COG1115 AlsT Na+/alanine sympo 67.4 1.6E+02 0.0034 30.4 18.0 35 40-74 59-94 (452)
89 TIGR00796 livcs branched-chain 67.2 59 0.0013 33.0 10.8 66 119-184 256-321 (378)
90 TIGR01197 nramp NRAMP (natural 67.0 1.5E+02 0.0033 30.1 27.7 57 333-394 319-377 (390)
91 PF00209 SNF: Sodium:neurotran 61.8 2.2E+02 0.0048 30.2 27.4 37 231-267 249-286 (523)
92 PF02028 BCCT: BCCT family tra 57.0 2.6E+02 0.0056 29.4 24.1 43 248-290 317-360 (485)
93 KOG2083 Na+/K+ symporter [Inor 55.8 15 0.00032 38.9 4.2 42 48-92 39-80 (643)
94 PF05525 Branch_AA_trans: Bran 49.8 2.3E+02 0.0049 29.3 11.6 67 119-185 262-328 (427)
95 PRK09928 choline transport pro 46.5 4.4E+02 0.0095 29.0 21.0 29 120-148 181-209 (679)
96 COG0534 NorM Na+-driven multid 45.3 3.6E+02 0.0079 27.9 12.8 134 256-402 85-221 (455)
97 PHA02680 ORF090 IMV phosphoryl 38.0 92 0.002 24.1 4.9 54 237-293 17-72 (91)
98 COG0534 NorM Na+-driven multid 33.3 4.3E+02 0.0094 27.4 11.0 132 258-402 311-443 (455)
99 PF12794 MscS_TM: Mechanosensi 32.1 5.2E+02 0.011 25.7 12.3 30 264-293 47-76 (340)
100 PHA03048 IMV membrane protein; 31.9 1.1E+02 0.0024 23.7 4.6 55 236-293 16-71 (93)
101 PF03977 OAD_beta: Na+-transpo 31.7 1.4E+02 0.003 29.6 6.3 89 231-320 145-254 (360)
102 PRK01844 hypothetical protein; 31.0 1.2E+02 0.0026 22.6 4.5 29 427-455 7-35 (72)
103 COG1114 BrnQ Branched-chain am 29.7 4.4E+02 0.0095 27.1 9.7 125 65-205 222-346 (431)
104 PF11085 YqhR: Conserved membr 29.4 76 0.0017 28.0 3.8 37 50-86 40-82 (173)
105 COG3763 Uncharacterized protei 28.8 1.5E+02 0.0032 22.0 4.5 30 426-455 6-35 (71)
106 COG4709 Predicted membrane pro 27.5 1.2E+02 0.0027 27.1 4.8 41 44-91 76-116 (195)
107 COG4858 Uncharacterized membra 26.4 4.8E+02 0.01 23.5 10.8 30 69-98 118-147 (226)
108 PRK09950 putative transporter; 26.3 8E+02 0.017 26.0 21.4 20 45-64 85-104 (506)
109 COG3476 Tryptophan-rich sensor 24.0 2.3E+02 0.0049 24.9 5.7 49 244-293 24-72 (161)
110 TIGR03750 conj_TIGR03750 conju 23.9 4.1E+02 0.0088 21.8 7.3 65 33-97 7-72 (111)
111 PRK15433 branched-chain amino 22.9 1.7E+02 0.0036 30.4 5.5 106 67-185 226-331 (439)
112 COG5264 VTC1 Vacuolar transpor 22.9 4.5E+02 0.0097 21.9 7.5 37 55-94 45-81 (126)
113 PRK00523 hypothetical protein; 22.8 2.1E+02 0.0045 21.4 4.5 30 425-454 6-35 (72)
114 PF11239 DUF3040: Protein of u 22.5 3E+02 0.0065 20.9 5.7 15 56-70 49-63 (82)
115 PRK10263 DNA translocase FtsK; 21.1 1.5E+03 0.032 27.2 16.3 17 272-288 30-46 (1355)
116 TIGR01109 Na_pump_decarbB sodi 20.9 1.8E+02 0.0039 28.7 4.9 87 231-318 145-252 (354)
117 KOG4812 Golgi-associated prote 20.6 1.6E+02 0.0035 27.5 4.3 83 357-454 162-255 (262)
118 PF08006 DUF1700: Protein of u 20.1 3.5E+02 0.0077 23.9 6.6 14 56-69 84-97 (181)
No 1
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.2e-72 Score=579.69 Aligned_cols=470 Identities=86% Similarity=1.455 Sum_probs=412.1
Q ss_pred CccccchhhHHHhhhccccch--hhhhhhcccccccccccccccCCchHHHHHHHHHhhhhhhhchhHHHHHhcchhHHH
Q 011966 1 MISEKQADEEMVSSLNESESQ--EKEEQIKQDDSKFGLKSLLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGI 78 (474)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~ 78 (474)
|.+++++++....+.+|.|.+ .+.+....++.+.++|+..||++|.+++++|+++..+|+|+|+||+||+++||++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gi 80 (473)
T PLN03074 1 MMAGKQAETAIVGNYVEMEVEGGGEKEEGGGGGGKSRLKSLLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGI 80 (473)
T ss_pred CCCccccchhHhhccchhccccccccccCCCCCCceeeeecccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHH
Confidence 456666666655444444432 112222235667788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhccc
Q 011966 79 ILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASN 158 (474)
Q Consensus 79 i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~ 158 (474)
++++++++++.||++++.+++.+++++++.++.++++++.+|.|+++..+||+++.+..+++++++++.++.|++.++++
T Consensus 81 i~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~ 160 (473)
T PLN03074 81 LFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASN 160 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 99999999999999999999888887766666778887778999999999999999999999999999999999988888
Q ss_pred ccccccccCcchhhhhhhHHHhhhcccCCCCCchHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCcCCCchHHHHHHHHH
Q 011966 159 IYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFLGLGMTTYTAWYLTIAAFVHGQVDGVTHSGPSTLVLYFTGAT 238 (474)
Q Consensus 159 ~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 238 (474)
++.+++..+.+.|+++++++++|++++|++++++++|.+|+.++++.++++++.++.++..++.++..+.++..++.+++
T Consensus 161 ~~~l~~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~ 240 (473)
T PLN03074 161 IYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGAT 240 (473)
T ss_pred hhhhCCCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHH
Confidence 87788888999999999999999999999999999999999987776666666666666656665555567788888899
Q ss_pred HHHHHhcCceehhhhhhhccCCccchHHHHHHHHHHHHHHHhhHhHHHHhhccccccccccccCCCCchHHHHHHHHHHH
Q 011966 239 NILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLLPRSRWRDVAVILMLI 318 (474)
Q Consensus 239 i~~faf~~h~~~~~i~~~mk~p~~~~~~~~~s~~~~~~~y~~~gi~Gy~~fG~~~~~~~~il~~l~~~~~~~i~~i~~~i 318 (474)
+++|||++|.++|+++++||+|++|+++..+++.+++++|+.+|+.||++|||++.+++++++|+|++.+..++++++++
T Consensus 241 ~i~faf~g~~v~~~I~~~M~~P~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~~~~~~~~~~i 320 (473)
T PLN03074 241 NILYTFGGHAVTVEIMHAMWKPQKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGWRDAAVILMLI 320 (473)
T ss_pred HHHHHhcccccHHHHHHhccChhcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999998899999999999999999999999985456788889977778999999999
Q ss_pred HHHHhhhhhhhhHHHHHHHHHcCCCCccchhhhhhhHhHHHHHHHHHHhcCCchhHHHhhhhHHHhhHHHhhhHHHHHHH
Q 011966 319 HQFITFGFACTPLYFVWEKVVGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHMLT 398 (474)
Q Consensus 319 ~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~~ip~~~~i~~lvGa~~~~~l~filP~l~~l~~ 398 (474)
+++.+||+++.|+.+.+|+..+.++++....|+.+|+.+++.++++|+.+|+|+++++++||++++.++|++|+++|+++
T Consensus 321 ~~~~sy~l~~~p~~~~~e~~~~~~~~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~ 400 (473)
T PLN03074 321 HQFITFGFACTPLYFVWEKAIGVHDTKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLT 400 (473)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998875555566779999999999999999999999999999999999999999999999999
Q ss_pred hcchhhhccccCCCCcccccchhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccccccccccCCCCCCC
Q 011966 399 YRSASARQNSAEKLPFFLPSWTAMYVVNTFILVWVLVVGFGLGGWASMTNFIKQVDTFGLFAKCYQCPPPAS 470 (474)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~v~Gt~~si~~ii~~~~~~~~~~~~~~~~~~~~ 470 (474)
++++..|++..|+|++..++|.++.++|+++++++++++++.|+|+|+++|+++++++++|++||+||+|+-
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~~~~~c~~~~~ 472 (473)
T PLN03074 401 YRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFAKCYQCPPPSP 472 (473)
T ss_pred hcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhhhhccCCCCCC
Confidence 888777777888888766677777899999999889998889999999999999999999999999999864
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-58 Score=457.42 Aligned_cols=388 Identities=19% Similarity=0.203 Sum_probs=330.4
Q ss_pred ccccCCchHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011966 39 LLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVI 118 (474)
Q Consensus 39 ~~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 118 (474)
...+++|..+|..|++|.++|+|+|+||+||+++||+.|.+..+++++++.||++.++++.++.+++...+..
T Consensus 42 ~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~------- 114 (449)
T KOG1304|consen 42 DREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSL------- 114 (449)
T ss_pred cCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccc-------
Confidence 3467789999999999999999999999999999999999999999999999999998887777666544333
Q ss_pred cHHHHH----------HhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccc-----cccCcchhhhhhhHHHhhhc
Q 011966 119 QWFEVL----------DGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIN-----DNLDKRTWTYIFGACCATTV 183 (474)
Q Consensus 119 ~y~~l~----------~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~-----~~~~~~~~~~i~~~i~~pl~ 183 (474)
+|.+.. .+.+||++|.++..+.+++++|.|..|++..++++..+. ...+.+.|+.+.....+|++
T Consensus 115 ~y~~~~~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~ 194 (449)
T KOG1304|consen 115 DYAETAESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLN 194 (449)
T ss_pred cHHHHHHHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHH
Confidence 344433 355888889999999999999999999999999886543 35567888888889999999
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCcCCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCccc
Q 011966 184 FIPSFHNYRLWSFLGLGMTTYTAWYLTIAAFVHGQVDGVTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKF 263 (474)
Q Consensus 184 ~~~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~~ 263 (474)
++||++.|+.+|.+|.+.++....++++..+.+. ++-.+.+...++.++...+|+.+|||+|++++.|++++||+|++|
T Consensus 195 ~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~-~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F 273 (449)
T KOG1304|consen 195 LIRNLKILSPFSLFANVFILVGLAIIMYYLVQDL-PPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKF 273 (449)
T ss_pred HHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhcc-CCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhc
Confidence 9999999999999999887754434444333322 222223333456777777899999999999999999999999999
Q ss_pred h---HHHHHHHHHHHHHHHhhHhHHHHhhccccccccccccCCCCchHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHc
Q 011966 264 K---SIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLLPRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVG 340 (474)
Q Consensus 264 ~---~~~~~s~~~~~~~y~~~gi~Gy~~fG~~~~~~~~il~~l~~~~~~~i~~i~~~i~l~~s~pl~~~p~~~~~~~~~~ 340 (474)
. ++++.++.+++++|..+|++||++||+++ ++.|+.|+|++.+.+.+++++++.+.++||++++|..+++|+.+.
T Consensus 274 ~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v--~~sITLNLP~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~ 351 (449)
T KOG1304|consen 274 PGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDV--KGSITLNLPQEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIR 351 (449)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHhhccccc--cceEEecCCccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHH
Confidence 8 99999999999999999999999999999 889999999977789999999999999999999999999999764
Q ss_pred C--CCCccchhhhhhhHhHHHHHHHHHHhcCCchhHHHhhhhHHHhhHHHhhhHHHHHHHhcchhhhccccCCCCccccc
Q 011966 341 M--HDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHMLTYRSASARQNSAEKLPFFLPS 418 (474)
Q Consensus 341 ~--~~~~~~~~~~~~r~~~v~~~~~iA~~ip~~~~i~~lvGa~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~~~ 418 (474)
. ++++.++....+|..+++++.++|..+||++.+++++||++++.+.+++|++++++.++++..+ .
T Consensus 352 ~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~------------~ 419 (449)
T KOG1304|consen 352 KKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKG------------R 419 (449)
T ss_pred HhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccC------------c
Confidence 2 2344567788899999999999999999999999999999999999999999999999887321 2
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 011966 419 WTAMYVVNTFILVWVLVVGFGLGGWASMTNF 449 (474)
Q Consensus 419 ~~~~~~~~~~li~~~g~~~~v~Gt~~si~~i 449 (474)
+.|+.++|.++++ +|+++++.|||.|++++
T Consensus 420 ~~~~~~~ni~l~~-~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 420 FMWKLIKNIVLIV-FGVFGFVYGTYTSIKEI 449 (449)
T ss_pred eehHHHHHHHHHH-HHHHHHHHHHhhhhhcC
Confidence 3456899988887 78999999999999874
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-56 Score=445.03 Aligned_cols=388 Identities=30% Similarity=0.445 Sum_probs=327.6
Q ss_pred ccccCCchHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011966 39 LLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVI 118 (474)
Q Consensus 39 ~~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 118 (474)
..+++.|.++|++|.++.++|.|+|+||||++++||+.|++++++.++++.||+++|.++++.++.+..+ +. .
T Consensus 33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~---r~----~ 105 (437)
T KOG1303|consen 33 TPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGK---RR----Y 105 (437)
T ss_pred ccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc---cC----C
Confidence 4466688999999999999999999999999999999999999999999999999999998777654332 21 2
Q ss_pred cHHHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhccccccc------cc-ccCcchhhhhhhHHHhhhcccCCCCCc
Q 011966 119 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYI------ND-NLDKRTWTYIFGACCATTVFIPSFHNY 191 (474)
Q Consensus 119 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~------~~-~~~~~~~~~i~~~i~~pl~~~~~l~~l 191 (474)
+|.|+++++||+++++++..++...++++++.|++..+|++..+ +. ..+.+.|+++++++.+|++++||++++
T Consensus 106 ~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l 185 (437)
T KOG1303|consen 106 RYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSL 185 (437)
T ss_pred ChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchh
Confidence 69999999999999999999999999999999999999987542 22 345678999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhcCCCC---CCCcCCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCccchHHHH
Q 011966 192 RLWSFLGLGMTTYTAWYLTIAAFVHGQVD---GVTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYL 268 (474)
Q Consensus 192 ~~~s~~~~~~~~~~~~~i~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~~~~~~~ 268 (474)
+++|..|....+.++.+.+..+..+|... ..++....+....++++|+++|+|++|+++||||++||+|+++++.+.
T Consensus 186 ~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~l 265 (437)
T KOG1303|consen 186 SYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALL 265 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHH
Confidence 99999999988877777777777766332 122222222222288999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHhHHHHhhccccccccccccCCC-CchHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHcCCCC---
Q 011966 269 LATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLLP-RSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVGMHDT--- 344 (474)
Q Consensus 269 ~s~~~~~~~y~~~gi~Gy~~fG~~~~~~~~il~~l~-~~~~~~i~~i~~~i~l~~s~pl~~~p~~~~~~~~~~~~~~--- 344 (474)
+++.+++++|+.+++.||++|||++ +++++.|++ +.++...+++++.++++.+|.++..|+.+.+|+....+.+
T Consensus 266 is~~~~~~~y~~vai~GY~aFG~~~--~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~ 343 (437)
T KOG1303|consen 266 ISYIIVTFLYFPVAIIGYWAFGDSV--PDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFK 343 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccc--chhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcccc
Confidence 9999999999999999999999999 789999996 4556789999999999999999999999999999875443
Q ss_pred -ccchhhhhhhHhHHHHHHHHHHhcCCchhHHHhhhhHHHhhHHHhhhHHHHHHHhcchhhhccccCCCCcccccchhhH
Q 011966 345 -KSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHMLTYRSASARQNSAEKLPFFLPSWTAMY 423 (474)
Q Consensus 345 -~~~~~~~~~r~~~v~~~~~iA~~ip~~~~i~~lvGa~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (474)
+....|.+.|+.+++.++++|+.+|+|+++++++||+...++++++|+++|+++++.+ |+..+|
T Consensus 344 ~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~-----------~~s~~~---- 408 (437)
T KOG1303|consen 344 KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPK-----------RFSPKW---- 408 (437)
T ss_pred ccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------hhhHHH----
Confidence 3556899999999999999999999999999999999999999999999999985544 223334
Q ss_pred HHHHHH-HHHHHHHHHhhhHHHHHHHHHH
Q 011966 424 VVNTFI-LVWVLVVGFGLGGWASMTNFIK 451 (474)
Q Consensus 424 ~~~~~l-i~~~g~~~~v~Gt~~si~~ii~ 451 (474)
++++.+ ++ +++++.+....+++.+++.
T Consensus 409 ~~~~~~~~~-~~~~~~v~~~~~~~~~li~ 436 (437)
T KOG1303|consen 409 LLNWVIILV-VGLLLSVLAAVGGVRSLII 436 (437)
T ss_pred HHHHHhhhh-hhhhHHHHHHHHHHHHHhh
Confidence 445555 44 3444444777777777664
No 4
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=7.8e-56 Score=457.21 Aligned_cols=382 Identities=15% Similarity=0.186 Sum_probs=307.6
Q ss_pred ccCCchHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccH
Q 011966 41 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 120 (474)
Q Consensus 41 ~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 120 (474)
-.+++..++++|++|+++|+|+|+||+||+++||++|++++++++.++.||.+++.++.++. +..+|
T Consensus 57 ~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~-------------~~~sY 123 (467)
T PTZ00206 57 IPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKT-------------NIRTY 123 (467)
T ss_pred cCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------CCCCH
Confidence 34567899999999999999999999999999999999999999999999999887653210 11279
Q ss_pred HHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccc----------cCcc-hhhhhhhHHHhhhcccCCCC
Q 011966 121 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDN----------LDKR-TWTYIFGACCATTVFIPSFH 189 (474)
Q Consensus 121 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~----------~~~~-~~~~i~~~i~~pl~~~~~l~ 189 (474)
+|++++++||++++++.++..++++|.|+.|++..+|++....+. ..++ .+.+++.++++|++++|+++
T Consensus 124 ~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~ 203 (467)
T PTZ00206 124 EGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHID 203 (467)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchH
Confidence 999999999999999999999999999999999999876432111 1122 24455667899999999999
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCC---cC--------CCchHHHHHHHHHHHHHHhcCceehhhhhhhcc
Q 011966 190 NYRLWSFLGLGMTTYTAWYLTIAAFVHGQVDGVT---HS--------GPSTLVLYFTGATNILYTFGGHAVTVEIMHAMW 258 (474)
Q Consensus 190 ~l~~~s~~~~~~~~~~~~~i~~~~~~~g~~~~~~---~~--------~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk 258 (474)
+|+++|.+|+.++++.++.+++.+..++.+++.+ .. ......+.+.++|+++|||.||.++|++++|||
T Consensus 204 ~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~ 283 (467)
T PTZ00206 204 SLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMT 283 (467)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhc
Confidence 9999999999888776655555555444332211 00 011223578899999999999999999999999
Q ss_pred CC--ccchHHHHHHHHHHHHHHHhhHhHHHHhhccccccccccccCC-CC-chHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 011966 259 KP--QKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLL-PR-SRWRDVAVILMLIHQFITFGFACTPLYFV 334 (474)
Q Consensus 259 ~p--~~~~~~~~~s~~~~~~~y~~~gi~Gy~~fG~~~~~~~~il~~l-~~-~~~~~i~~i~~~i~l~~s~pl~~~p~~~~ 334 (474)
+| +++.++...++.+++++|..+|++||++||+++ ++++++|+ |. +....++++.+.+.++++||++.+|+|+.
T Consensus 284 ~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v--~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~ 361 (467)
T PTZ00206 284 NRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNV--TGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNA 361 (467)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc--chHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 85 567788889999999999999999999999999 88999999 44 34567889999999999999999999999
Q ss_pred HHHHHcCCC-CccchhhhhhhHhHHHHHHHHHHhcCCchhHHHhhhhHHHhhHHHhhhHHHHHHHhcchhhhccccCCCC
Q 011966 335 WEKVVGMHD-TKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHMLTYRSASARQNSAEKLP 413 (474)
Q Consensus 335 ~~~~~~~~~-~~~~~~~~~~r~~~v~~~~~iA~~ip~~~~i~~lvGa~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~ 413 (474)
+++.+..+. +.+.++|...+..++++++++|+.+|+++.+++++||++++.++|++|+++|++....++.+
T Consensus 362 i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~-------- 433 (467)
T PTZ00206 362 LYDVIGWDARKVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQK-------- 433 (467)
T ss_pred HHHHhCCCcccCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHh--------
Confidence 988875332 33445666667777888899999999999999999999999999999999999853222111
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 011966 414 FFLPSWTAMYVVNTFILVWVLVVGFGLGGWASMTNFI 450 (474)
Q Consensus 414 ~~~~~~~~~~~~~~~li~~~g~~~~v~Gt~~si~~ii 450 (474)
..|. +.+.++++++ +|+++++.|||+|+++.+
T Consensus 434 ---~~~~-~~~~~~~lli-~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 434 ---VGPF-YYISTYVVLI-TGVIAIVFGTGATIWGVT 465 (467)
T ss_pred ---hchH-HHHHHHHHHH-HHhheEEecchhHhhHHh
Confidence 0121 2477888888 678888999999999876
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.5e-52 Score=429.34 Aligned_cols=383 Identities=25% Similarity=0.370 Sum_probs=317.5
Q ss_pred cCCchHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHH
Q 011966 42 HGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 121 (474)
Q Consensus 42 ~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 121 (474)
|++|.+++++|++|+++|+|+|+||++|+++||++|++++++++.++.||.+++.++..+.++++ +..+|+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~---------~~~~y~ 71 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGT---------GRRSYG 71 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhcccccccccc---------cccccc
Confidence 68899999999999999999999999999999999999999999999999999988754432010 112799
Q ss_pred HHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhccccccccc------ccCcchhhhhhhHHHhhhcccCCCCCchHHH
Q 011966 122 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIND------NLDKRTWTYIFGACCATTVFIPSFHNYRLWS 195 (474)
Q Consensus 122 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~------~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 195 (474)
|++++++||+++++..++..++++|.++.|++..+|.+..+.+ ..++..|.++..++++|++++|+++++++.|
T Consensus 72 ~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s 151 (409)
T PF01490_consen 72 DLARRAFGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLS 151 (409)
T ss_pred ccccccccccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHh
Confidence 9999999999999999999999999999999999988765432 3466678888889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhh--cCCCCCCCc---CCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCccch---HHH
Q 011966 196 FLGLGMTTYTAWYLTIAAFV--HGQVDGVTH---SGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFK---SIY 267 (474)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~~~--~g~~~~~~~---~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~~~---~~~ 267 (474)
.+|.+++++......+.... .+...+.+. .+..++.+++.++|+++|||.||+++|++++|||+|++++ ++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~ 231 (409)
T PF01490_consen 152 ILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVL 231 (409)
T ss_pred hhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceee
Confidence 99998877531112221111 122222221 1245667899999999999999999999999999999976 888
Q ss_pred HHHHHHHHHHHHhhHhHHHHhhccccccccccccCCCCch-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHcCC----
Q 011966 268 LLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLLPRSR-WRDVAVILMLIHQFITFGFACTPLYFVWEKVVGMH---- 342 (474)
Q Consensus 268 ~~s~~~~~~~y~~~gi~Gy~~fG~~~~~~~~il~~l~~~~-~~~i~~i~~~i~l~~s~pl~~~p~~~~~~~~~~~~---- 342 (474)
..++.+++++|..+|+.||++||+++ ++|++.|+|+++ +..++++++.++++.+||++.+|.++.+++.+...
T Consensus 232 ~~s~~~~~~~y~~~g~~gy~~fg~~~--~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~ 309 (409)
T PF01490_consen 232 SISMIICFIIYLLFGIFGYLAFGDSV--QGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASS 309 (409)
T ss_pred eehhhhhhHHhhhhhhcccceeeeee--cchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheecccccc
Confidence 99999999999999999999999999 789999999876 67899999999999999999999999999987531
Q ss_pred ------CCccchhhhhhhHhHHHHHHHHHHhcCCchhHHHhhhhHHHhhHHHhhhHHHHHHHhcchhhhccccCCCCccc
Q 011966 343 ------DTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHMLTYRSASARQNSAEKLPFFL 416 (474)
Q Consensus 343 ------~~~~~~~~~~~r~~~v~~~~~iA~~ip~~~~i~~lvGa~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~ 416 (474)
++.++++|...|+.+++.++++|+.+|+++++++++|++++..++|++|+++|++.+++++.++ +
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~------~--- 380 (409)
T PF01490_consen 310 RDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSF------G--- 380 (409)
T ss_pred ccccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhccccccc------c---
Confidence 2344677899999999999999999999999999999999999999999999999988763211 0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhhhHHHHH
Q 011966 417 PSWTAMYVVNTFILVWVLVVGFGLGGWASM 446 (474)
Q Consensus 417 ~~~~~~~~~~~~li~~~g~~~~v~Gt~~si 446 (474)
.|..+..+++.+++ +|+++++.|+|+++
T Consensus 381 -~~~~~~~~~~~~~~-~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 381 -WWWILSILNWIIIV-FGVVLMVFGTYQSI 408 (409)
T ss_pred -eeehhhccceEEEE-EeeehhHHhHHHHc
Confidence 11111244666666 57777789999876
No 6
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-46 Score=346.69 Aligned_cols=392 Identities=13% Similarity=0.153 Sum_probs=321.9
Q ss_pred cccCCchHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 011966 40 LWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQ 119 (474)
Q Consensus 40 ~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 119 (474)
-..+.+-+||..|.+|.+-|.=+++||+|...+||+ ++..++.++.++.||+.++.+|. |....+-+-.+.|+ +
T Consensus 113 ~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CL--YE~~~dGevVrvRd---s 186 (524)
T KOG4303|consen 113 ASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECL--YENGEDGEVVRVRD---S 186 (524)
T ss_pred CCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhh--ccCCCCCcEEEeeh---h
Confidence 334568899999999999999999999999999998 99999999999999998766653 32221112245555 8
Q ss_pred HHHHHHhhcCccch-hhhHhhHHHHHHHHHHHHHHhhcccccccc--cccCcchhhhhhhHHHhhhcccCCCCCchHHHH
Q 011966 120 WFEVLDGLLGPYWK-AVGLAFNCTFLLFGSVIQLIACASNIYYIN--DNLDKRTWTYIFGACCATTVFIPSFHNYRLWSF 196 (474)
Q Consensus 120 y~~l~~~~~G~~~~-~~~~~~~~~~~~g~~~~yli~~~~~~~~~~--~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~ 196 (474)
|.+++..+++|... ..+.+.+.+.+..+|+.|+++++|.++.-. ...+.+-|+++.++.++|+.++++++-.+.+|+
T Consensus 187 YvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf 266 (524)
T KOG4303|consen 187 YVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWMMITSASLLPCSFLKDLKIVSRLSF 266 (524)
T ss_pred HHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchhhhhhHHHhhhHHHHHHHHHHHHHH
Confidence 99999999888754 778888999999999999999999887533 367888999999999999999999988888888
Q ss_pred HHHHHHHHHHHHhhhhhhhc-CCCCCCCcCCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCccchHHHHHHHHHHH
Q 011966 197 LGLGMTTYTAWYLTIAAFVH-GQVDGVTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVF 275 (474)
Q Consensus 197 ~~~~~~~~~~~~i~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~~~~~~~~s~~~~~ 275 (474)
+...+-+.+-++++.+++.+ ++..-.+..-..+...+..++|+++|+|..|..+|+++.+|++|++|...+.++-+.+.
T Consensus 267 ~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsHIAAa 346 (524)
T KOG4303|consen 267 FCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSHIAAA 346 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHHHHHH
Confidence 88887776655566666553 21111111112344455567899999999999999999999999999999999999999
Q ss_pred HHHHhhHhHHHHhhccccccccccccCCCCchHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHcC-CC---------Cc
Q 011966 276 TLTIPSAAAVYWAFGDQLLTHSNAFSLLPRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVGM-HD---------TK 345 (474)
Q Consensus 276 ~~y~~~gi~Gy~~fG~~~~~~~~il~~l~~~~~~~i~~i~~~i~l~~s~pl~~~p~~~~~~~~~~~-~~---------~~ 345 (474)
++-..+|..||++||+.+ +..|.+|+|+..+..++++++++-.+++||+..+...+.+|+-+.. .+ .+
T Consensus 347 VfK~~Fg~~~fLTf~~~T--qevItnnLp~qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~D 424 (524)
T KOG4303|consen 347 VFKVVFGMLGFLTFGELT--QEVITNNLPNQSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPD 424 (524)
T ss_pred HHHHHHHHheeeeechhh--HHHHhcCCCccchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCC
Confidence 999999999999999999 7799999999899999999999999999999999999999986642 11 12
Q ss_pred cchhh--hhhhHhHHHHHHHHHHhcCCchhHHHhhhhHHHhhHHHhhhHHHHHHHhcchhhhccccCCCCcccccchhhH
Q 011966 346 SICLR--ALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHMLTYRSASARQNSAEKLPFFLPSWTAMY 423 (474)
Q Consensus 346 ~~~~~--~~~r~~~v~~~~~iA~~ip~~~~i~~lvGa~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (474)
.+.+. +.+|.++++.+.++|+.+|+|..+++++|++.++.++|++|++||+++.+++-. | .++
T Consensus 425 g~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~--------------~-~e~ 489 (524)
T KOG4303|consen 425 GSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLN--------------N-FEK 489 (524)
T ss_pred cchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhh--------------h-HHH
Confidence 23344 457999999999999999999999999999999999999999999999877632 1 135
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 011966 424 VVNTFILVWVLVVGFGLGGWASMTNFIKQVDT 455 (474)
Q Consensus 424 ~~~~~li~~~g~~~~v~Gt~~si~~ii~~~~~ 455 (474)
..+..+++. |+..+|.|.|.|...+|+.++.
T Consensus 490 ~fD~~Ii~~-G~~~~vsG~y~S~~~Li~A~~~ 520 (524)
T KOG4303|consen 490 RFDQGIIIM-GCSVCVSGVYFSSMELIRAINS 520 (524)
T ss_pred hhheeEEEE-eeeEEEEeEehhhHHHHHHHhc
Confidence 668888885 5555679999999999999876
No 7
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=8.8e-42 Score=341.77 Aligned_cols=376 Identities=18% Similarity=0.193 Sum_probs=296.1
Q ss_pred CCchHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHH
Q 011966 43 GGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 122 (474)
Q Consensus 43 ~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 122 (474)
++|..++++|+.|+++|+|+|++|+||++.|++.|++++..+++++.++.+++.++..+.++ + +|++
T Consensus 5 ~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~----------~---ty~~ 71 (411)
T KOG1305|consen 5 KTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGE----------R---TYSS 71 (411)
T ss_pred ccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC----------C---CHHH
Confidence 45888999999999999999999999999999999999999999999999988876433221 1 7999
Q ss_pred HHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhccccccc-----ccc------cCcch-hhhhhhHHHhhhcccCCCCC
Q 011966 123 VLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYI-----NDN------LDKRT-WTYIFGACCATTVFIPSFHN 190 (474)
Q Consensus 123 l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~-----~~~------~~~~~-~~~i~~~i~~pl~~~~~l~~ 190 (474)
++++.+|+.++....+....+..| ++.|++..+|.+..+ .++ .+++. |.+....++.|+++.|++++
T Consensus 72 l~~~~~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~ 150 (411)
T KOG1305|consen 72 LGDLIFGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDS 150 (411)
T ss_pred HHHHHcCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhh
Confidence 999999999977666666666666 577777777665321 111 12223 56677789999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhhcCC-CCCCCcCCC--chHHHHHHHHHHHHHHhcCceehhhhhhhccCCcc--chH
Q 011966 191 YRLWSFLGLGMTTYTAWYLTIAAFVHGQ-VDGVTHSGP--STLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK--FKS 265 (474)
Q Consensus 191 l~~~s~~~~~~~~~~~~~i~~~~~~~g~-~~~~~~~~~--~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~--~~~ 265 (474)
+++.|.++.+++.+.++.+++.....+. .++.....+ ..+.+++.++|+++|||.||+++.++++|||+|++ +++
T Consensus 151 Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~ 230 (411)
T KOG1305|consen 151 LKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQR 230 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHH
Confidence 9999999999998877666666555332 122221112 22367889999999999999999999999999977 688
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHhhccccccccccccCCCCchH-------HHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 011966 266 IYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLLPRSRW-------RDVAVILMLIHQFITFGFACTPLYFVWEKV 338 (474)
Q Consensus 266 ~~~~s~~~~~~~y~~~gi~Gy~~fG~~~~~~~~il~~l~~~~~-------~~i~~i~~~i~l~~s~pl~~~p~~~~~~~~ 338 (474)
+...+...+.++|..+|.+||+.|||.+ .+|++.++|+..- ...++..+.++.+..+|+..+|+|..+++.
T Consensus 231 v~~~~~~~~~~iy~~~g~~GYL~Fg~~v--~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~ 308 (411)
T KOG1305|consen 231 VSNIAIILATLIYLLTGLFGYLTFGDLV--KGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDEL 308 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheecccc--hHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 8999999999999999999999999999 7899999986432 368999999999999999999999987776
Q ss_pred HcCCC----CccchhhhhhhHhHHHHHHHHHHhcCCchhHHHhhhhHHHhhHHHhhhHHHHHHHhcchhhhccccCCCCc
Q 011966 339 VGMHD----TKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHMLTYRSASARQNSAEKLPF 414 (474)
Q Consensus 339 ~~~~~----~~~~~~~~~~r~~~v~~~~~iA~~ip~~~~i~~lvGa~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~ 414 (474)
...+. .....+++++...++....+.|+.+|+++++++++||++++.++|++|+++|++..|++ .++
T Consensus 309 ~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~~-~~~-------- 379 (411)
T KOG1305|consen 309 LFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKKK-SRE-------- 379 (411)
T ss_pred hcccCCCCCCccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeeccc-ccc--------
Confidence 54222 13445677889999999999999999999999999999999999999999999987762 221
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Q 011966 415 FLPSWTAMYVVNTFILVWVLVVGFGLGGWASMTNFIKQ 452 (474)
Q Consensus 415 ~~~~~~~~~~~~~~li~~~g~~~~v~Gt~~si~~ii~~ 452 (474)
+...+...+ .++...+.|+...+.++..+
T Consensus 380 --------~~~~~~~~~-~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 380 --------PLGALIFLI-LGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred --------chHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 222333333 23343446777777666553
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-30 Score=265.42 Aligned_cols=346 Identities=15% Similarity=0.139 Sum_probs=259.4
Q ss_pred ccCCchHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccH
Q 011966 41 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 120 (474)
Q Consensus 41 ~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 120 (474)
..+.+.+++++++.++++|+|+|+||++++..|++++++++++.+.+++++.+++.++..++++.+ .++
T Consensus 6 ~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~-----------~~~ 74 (415)
T COG0814 6 KKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGK-----------ASI 74 (415)
T ss_pred cCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-----------ccH
Confidence 445578999999999999999999999999999999999999999999999999998866554321 168
Q ss_pred HHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccc-----cc-cCcchhhhhhhHHHhhhcccCCCCCchHH
Q 011966 121 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIN-----DN-LDKRTWTYIFGACCATTVFIPSFHNYRLW 194 (474)
Q Consensus 121 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~-----~~-~~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 194 (474)
.+++++.+||+++++......+.+++.+++|.+..++.+.... .+ .+++.+.+++..++.++++.++...++..
T Consensus 75 ~~~~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~t 154 (415)
T COG0814 75 TSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKIT 154 (415)
T ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 9999999999999999999999999999999998888765322 22 56677788888888889999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCCC---CCcCCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCcc--chHHHHH
Q 011966 195 SFLGLGMTTYTAWYLTIAAFVHGQVDG---VTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK--FKSIYLL 269 (474)
Q Consensus 195 s~~~~~~~~~~~~~i~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~--~~~~~~~ 269 (474)
+.+....+.+.++...+..... +.+. .+...+..+..+..++|+++|||+||+++|+++++||++++ .+++..+
T Consensus 155 s~l~~~~v~~~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~ 233 (415)
T COG0814 155 SLLVFGKVIYLVLLVVYLIPHW-NPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILI 233 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccc-CHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHH
Confidence 9998888776544433322221 1111 11111366788899999999999999999999999998766 7999999
Q ss_pred HHHHHHHHHHhhHhHHHHhhccccccccccccCCCCchHHHHHHHHHHHHHHHhhhhhhhhHH--------------HHH
Q 011966 270 ATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLLPRSRWRDVAVILMLIHQFITFGFACTPLY--------------FVW 335 (474)
Q Consensus 270 s~~~~~~~y~~~gi~Gy~~fG~~~~~~~~il~~l~~~~~~~i~~i~~~i~l~~s~pl~~~p~~--------------~~~ 335 (474)
+..+..++|+.++.++|..+|+.+ .++++++.++.................++|...++.. +..
T Consensus 234 ~~~~~~vlyi~~~~~~~~~~~~~~--~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~ 311 (415)
T COG0814 234 GSLIALVLYILVGFFVFGCFGSLV--FGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGL 311 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccc--HHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhh
Confidence 999999999999999999999999 7899999986653333333333333344444444433 333
Q ss_pred HHHHcC-CCCc---cchhhh--hhhHhHHHHHHHHHHhcCCchhHHHhhhhHHHhhHHHhhhHHHHHHHhc
Q 011966 336 EKVVGM-HDTK---SICLRA--LARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHMLTYR 400 (474)
Q Consensus 336 ~~~~~~-~~~~---~~~~~~--~~r~~~v~~~~~iA~~ip~~~~i~~lvGa~~~~~l~filP~l~~l~~~~ 400 (474)
++.++. +.++ ..+.+. ......+..++.++...|+.+.+++.+|+..+..+.++.|...+.+...
T Consensus 312 ~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~ 382 (415)
T COG0814 312 ADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPA 382 (415)
T ss_pred hHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 333332 1111 111221 2233344556777778888888888888888888888888877755543
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.93 E-value=1.5e-23 Score=209.82 Aligned_cols=347 Identities=16% Similarity=0.113 Sum_probs=246.1
Q ss_pred cccCCchHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 011966 40 LWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQ 119 (474)
Q Consensus 40 ~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 119 (474)
.+++.+.+++++-+..|.+|+|+|+||++-++.|+++++++++++++.+.||+.++.++..+++ ++. +
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~-----------~g~-~ 74 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR-----------IGS-S 74 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------CCC-C
Confidence 4556689999999999999999999999999999999999999999999999999888754332 111 6
Q ss_pred HHHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccc----cccCcchhhhhhhHHHhhhcccCC--CCCchH
Q 011966 120 WFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIN----DNLDKRTWTYIFGACCATTVFIPS--FHNYRL 193 (474)
Q Consensus 120 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~----~~~~~~~~~~i~~~i~~pl~~~~~--l~~l~~ 193 (474)
+..++|+.+||+|+.+..+...+..|..+++|+...++.+.... .+.+++.-.+++.++...+.+..+ .+++..
T Consensus 75 ~~tma~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~ 154 (414)
T PRK10483 75 FDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTA 154 (414)
T ss_pred HHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 89999999999999999898888899999999987777664322 133444444566666666655432 334444
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcCCCCCCCcCCCchHHHHHHHHHHHHHHhcCceehhhhhhhccC-CccchHHHHHHHH
Q 011966 194 WSFLGLGMTTYTAWYLTIAAFVHGQVDGVTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWK-PQKFKSIYLLATL 272 (474)
Q Consensus 194 ~s~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~-p~~~~~~~~~s~~ 272 (474)
.-..+.+.++...+....-.+..+...+.....+..+...+.++|++++||+.|+++|++++.+++ ++|.+++..++..
T Consensus 155 ~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~ 234 (414)
T PRK10483 155 IVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTL 234 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHH
Confidence 434444333322111111111100000111122234566788999999999999999999999876 5677999999999
Q ss_pred HHHHHHHh--hHhHHHHh---------hccccccccccccC-CCCchHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHc
Q 011966 273 YVFTLTIP--SAAAVYWA---------FGDQLLTHSNAFSL-LPRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVG 340 (474)
Q Consensus 273 ~~~~~y~~--~gi~Gy~~---------fG~~~~~~~~il~~-l~~~~~~~i~~i~~~i~l~~s~pl~~~p~~~~~~~~~~ 340 (474)
+..++|+. ..+.|-.. -|++.++--+.+.+ .+++....+..++..+++.+||-=.....+|.+.+.++
T Consensus 235 Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k 314 (414)
T PRK10483 235 MALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFG 314 (414)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99988876 33333222 22222000011111 22233446788899999999999999999999999987
Q ss_pred CCCCccchhhhhhhHhHHHHHHHHHHhcCC-chhHHHhhhhHHHhhHHHhhhHHHHHHHhcc
Q 011966 341 MHDTKSICLRALARLPVVIPIWFLAIIFPF-FGPINSAVGALLVSFTVYIIPALAHMLTYRS 401 (474)
Q Consensus 341 ~~~~~~~~~~~~~r~~~v~~~~~iA~~ip~-~~~i~~lvGa~~~~~l~filP~l~~l~~~~~ 401 (474)
.+++ ...|........+.++++|...|+ |-..+++.|.. +..+.-++|+++.++.||+
T Consensus 315 ~~~~--~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 315 FDDS--AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred CCCc--cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 5432 345666777888899999999998 88999999976 6677789999999998754
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.92 E-value=1e-22 Score=205.58 Aligned_cols=341 Identities=14% Similarity=0.156 Sum_probs=240.0
Q ss_pred CchHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHH
Q 011966 44 GSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 123 (474)
Q Consensus 44 ~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 123 (474)
.+.+++++-+..+.+|+|+|+||++.+..|++++++.+++++.++++++.++.+...++++ . .++.++
T Consensus 3 ~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-----------~-~~~~~~ 70 (394)
T PF03222_consen 3 NSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-----------G-SSLTSM 70 (394)
T ss_pred chHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------C-CCHHHH
Confidence 4678999999999999999999999999999999999999999999999988877544322 1 179999
Q ss_pred HHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccc-----cccCcchhhhhhhHHHhhhcccCC--CCCchHHHH
Q 011966 124 LDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIN-----DNLDKRTWTYIFGACCATTVFIPS--FHNYRLWSF 196 (474)
Q Consensus 124 ~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~-----~~~~~~~~~~i~~~i~~pl~~~~~--l~~l~~~s~ 196 (474)
+++.+||+|+++..+...+..+...++|....++.+.... .+.+++.-..++.++...+....+ .++....-.
T Consensus 71 a~~~lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv 150 (394)
T PF03222_consen 71 AEKYLGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLV 150 (394)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999998888889999999987776654322 123333333334333333333221 222222222
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCCCCc--CCCchHHHHHHHHHHHHHHhcCceehhhhhhhccC-CccchHHHHHHHHH
Q 011966 197 LGLGMTTYTAWYLTIAAFVHGQVDGVTH--SGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWK-PQKFKSIYLLATLY 273 (474)
Q Consensus 197 ~~~~~~~~~~~~i~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~-p~~~~~~~~~s~~~ 273 (474)
.+.+..+.. +......+-+.+.... +.+.++...+.++|++++||+.|+++|++.+.+++ ++|.+++..++..+
T Consensus 151 ~~~i~~~~~---l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i 227 (394)
T PF03222_consen 151 FGMIISFII---LVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLI 227 (394)
T ss_pred HHHHHHHHH---HHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHH
Confidence 222222211 1111111111111111 23467788889999999999999999999999985 56678888888888
Q ss_pred HHHHHHhh--HhHHHH---------hhccccccccccccCCCC-chHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHcC
Q 011966 274 VFTLTIPS--AAAVYW---------AFGDQLLTHSNAFSLLPR-SRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVGM 341 (474)
Q Consensus 274 ~~~~y~~~--gi~Gy~---------~fG~~~~~~~~il~~l~~-~~~~~i~~i~~~i~l~~s~pl~~~p~~~~~~~~~~~ 341 (474)
..++|+.. .+.|-+ .-+++...-...+.+..+ +....+..++..+++.+||-=.....+|.+++.++.
T Consensus 228 ~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~ 307 (394)
T PF03222_consen 228 PLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL 307 (394)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888653 444411 122121000112333333 334578899999999999999999999999998875
Q ss_pred CCCccchhhhhhhHhHHHHHHHHHHhcCC-chhHHHhhhhHHHhhHHHhhhHHHHHHHhcch
Q 011966 342 HDTKSICLRALARLPVVIPIWFLAIIFPF-FGPINSAVGALLVSFTVYIIPALAHMLTYRSA 402 (474)
Q Consensus 342 ~~~~~~~~~~~~r~~~v~~~~~iA~~ip~-~~~i~~lvGa~~~~~l~filP~l~~l~~~~~~ 402 (474)
+ +....|........+.++++|...|+ |...+++.| .....+..++|+++.+|.++++
T Consensus 308 ~--~~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~ 366 (394)
T PF03222_consen 308 K--NNSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRK 366 (394)
T ss_pred C--ccccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHccc
Confidence 2 33445666667777888999999997 889999999 9999999999999999986655
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.91 E-value=4.7e-22 Score=198.85 Aligned_cols=336 Identities=13% Similarity=0.099 Sum_probs=239.5
Q ss_pred chHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHH
Q 011966 45 SVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL 124 (474)
Q Consensus 45 s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~ 124 (474)
+.++++.-+..|++|+|+|+||++-++.|+.+++++++++++.+.||+.++.++..++++ +. ++..++
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~-----------g~-~l~tma 77 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV-----------GS-SFNTIT 77 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------CC-CHHHHH
Confidence 667788999999999999999999999999999999999999999999999887544421 11 688999
Q ss_pred HhhcCccchhhhHhhHHHHHHHHHHHHHHhhccccccccc-----ccCcchhhhhhhHHHhhhcccCC--CCCchHHHHH
Q 011966 125 DGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIND-----NLDKRTWTYIFGACCATTVFIPS--FHNYRLWSFL 197 (474)
Q Consensus 125 ~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~-----~~~~~~~~~i~~~i~~pl~~~~~--l~~l~~~s~~ 197 (474)
|+.+||+|+.+..+...+..|..+++|+...++.+....+ +.+.+.-.++++.+..++.+..+ .+++...-..
T Consensus 78 ~~~LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~ 157 (415)
T PRK09664 78 KDLIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISSLAASRITSLFLG 157 (415)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 9999999999999999888999999999887777644321 23334344556566666655443 3334333333
Q ss_pred HHHHHHHHHHHhhhhhhhcC-CCCCCCc-CC----CchHHHHHHHHHHHHHHhcCceehhhhhhhccCC-ccchHHHHHH
Q 011966 198 GLGMTTYTAWYLTIAAFVHG-QVDGVTH-SG----PSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKSIYLLA 270 (474)
Q Consensus 198 ~~~~~~~~~~~i~~~~~~~g-~~~~~~~-~~----~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p-~~~~~~~~~s 270 (474)
+....+.. .+...... +.+.... +. ...+..++.++|++++||+.|+++|++.+.+++. ++.++....+
T Consensus 158 ~~ii~f~~----~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~G 233 (415)
T PRK09664 158 LKIISFVI----VFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFG 233 (415)
T ss_pred HHHHHHHH----HHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHH
Confidence 33322221 11111111 1111110 10 1113457779999999999999999999999764 5667888888
Q ss_pred HHHHHHHHHh--hHhHH---------HHhhcccccccc---ccccCCCCchHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 011966 271 TLYVFTLTIP--SAAAV---------YWAFGDQLLTHS---NAFSLLPRSRWRDVAVILMLIHQFITFGFACTPLYFVWE 336 (474)
Q Consensus 271 ~~~~~~~y~~--~gi~G---------y~~fG~~~~~~~---~il~~l~~~~~~~i~~i~~~i~l~~s~pl~~~p~~~~~~ 336 (474)
..+..++|+. .++.| -..-|+++ +. ....+.+++....+..++..+++.+||-=.....+|.+.
T Consensus 234 s~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv--~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~ 311 (415)
T PRK09664 234 SLLALVIYLFWLYCTMGNIPRESFKAIISSGGNV--DSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLA 311 (415)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCc--hHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877743 34444 12233333 11 111233333445688889999999999999999999999
Q ss_pred HHHcCCCCccchhhhhhhHhHHHHHHHHHHhcCC-chhHHHhhhhHHHhhHHHhhhHHHHHHHhcc
Q 011966 337 KVVGMHDTKSICLRALARLPVVIPIWFLAIIFPF-FGPINSAVGALLVSFTVYIIPALAHMLTYRS 401 (474)
Q Consensus 337 ~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~~ip~-~~~i~~lvGa~~~~~l~filP~l~~l~~~~~ 401 (474)
+.++.+++ ...|........+.+++++...|+ |-..++..|.. .+.+.-++|+++-+|.||+
T Consensus 312 D~~~~~~~--~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 312 DLFKIDNS--HGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred HHhCCCCc--cccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 99875432 345777777888899999999998 88999999996 6688889999999998864
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.90 E-value=2.2e-21 Score=195.11 Aligned_cols=337 Identities=14% Similarity=0.127 Sum_probs=233.3
Q ss_pred chHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHH
Q 011966 45 SVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL 124 (474)
Q Consensus 45 s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~ 124 (474)
+.+++++.+..|.+|+|+|+||.+....|++++++++++++.++.|+++++.++..+++ ++ .++.+++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~-----------~~-~~~~~~a 71 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVP-----------AD-TGLGTLA 71 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----------CC-CCHHHHH
Confidence 67889999999999999999999999999999999999999999999988887532211 11 1689999
Q ss_pred HhhcCccchhhhHhhHHHHHHHHHHHHHHhhccccccc-----ccccCcchhhhhhhHHHhhhcccCC--CCCchHHHHH
Q 011966 125 DGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYI-----NDNLDKRTWTYIFGACCATTVFIPS--FHNYRLWSFL 197 (474)
Q Consensus 125 ~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~-----~~~~~~~~~~~i~~~i~~pl~~~~~--l~~l~~~s~~ 197 (474)
++.+||+|+++..+...+..|..+++|....++.+.+. ..+.+...+.+++.++.....+..+ .++....-..
T Consensus 72 ~~~LG~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~ 151 (403)
T PRK15132 72 KRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFS 151 (403)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999998889999999998877665432 1133444455555444444444332 2223222222
Q ss_pred HHHHHHHHHHHhhhhhhhcC-CCCCCCcCCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCC-ccchHHHHHHHHHHH
Q 011966 198 GLGMTTYTAWYLTIAAFVHG-QVDGVTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKP-QKFKSIYLLATLYVF 275 (474)
Q Consensus 198 ~~~~~~~~~~~i~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p-~~~~~~~~~s~~~~~ 275 (474)
+.+..+... ......+ +.++.... +.+....+.++|++++||+.|+++|++.+.+++. +|.+++..++..+..
T Consensus 152 ~~ii~~~~~----~~~l~p~~~~~~L~~~-~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~l 226 (403)
T PRK15132 152 AKIIFLVVM----LALMMPHIHKVNLLTL-PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPL 226 (403)
T ss_pred HHHHHHHHH----HHHHHHhcCHHHHhcC-CccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 322222111 1111111 11111110 1111237788999999999999999999999764 566899999998888
Q ss_pred HHHHhh--HhHHHHh---hcccccccc---ccccCC----CCchHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHcCCC
Q 011966 276 TLTIPS--AAAVYWA---FGDQLLTHS---NAFSLL----PRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVGMHD 343 (474)
Q Consensus 276 ~~y~~~--gi~Gy~~---fG~~~~~~~---~il~~l----~~~~~~~i~~i~~~i~l~~s~pl~~~p~~~~~~~~~~~~~ 343 (474)
++|+.. .+.|-.. +.+..+++. ++++.+ +++....++.++..+++.+||-=.....+|.+.+.++.++
T Consensus 227 i~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~ 306 (403)
T PRK15132 227 VAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRN 306 (403)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 888653 3333221 111111011 222222 2233456888889999999999999999999999886432
Q ss_pred CccchhhhhhhHhHHHHHHHHHHhcCC-chhHHHhhhhHHHhhHHHhhhHHHHHHHhcc
Q 011966 344 TKSICLRALARLPVVIPIWFLAIIFPF-FGPINSAVGALLVSFTVYIIPALAHMLTYRS 401 (474)
Q Consensus 344 ~~~~~~~~~~r~~~v~~~~~iA~~ip~-~~~i~~lvGa~~~~~l~filP~l~~l~~~~~ 401 (474)
+ ...|........+.++++|...|+ |...+++.|. ....+.+++|+++-+|.+++
T Consensus 307 ~--~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~ 362 (403)
T PRK15132 307 T--VGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQ 362 (403)
T ss_pred c--ccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Confidence 2 334777777888999999999998 8889999886 57899999999999998754
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.89 E-value=1.7e-21 Score=197.73 Aligned_cols=336 Identities=15% Similarity=0.062 Sum_probs=233.3
Q ss_pred HHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHHHhhcCc
Q 011966 51 FSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGP 130 (474)
Q Consensus 51 ~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~ 130 (474)
...+++++|+|++++|.++++.|+..+.+.+++.++++.++.+++.+...++++. .++.+.+++.+||
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~------------~~~~~~~~~~~G~ 71 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGG------------ASFNTIAKDLLGK 71 (381)
T ss_pred EEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------------CCHHHHHHHHhCH
Confidence 4567899999999999999999999999999999999999998888765443311 1689999999999
Q ss_pred cchhhhHhhHHHHHHHHHHHHHHhhccccccc-----ccccCcchhhhhhhHHHhhhcccCCCCCchHHHHHHHHHHHHH
Q 011966 131 YWKAVGLAFNCTFLLFGSVIQLIACASNIYYI-----NDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFLGLGMTTYT 205 (474)
Q Consensus 131 ~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~-----~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~ 205 (474)
+++++.........+..+.+|....++.+... ....+.+.+.+++.+++.++. .+..+...+++.+.+...+..
T Consensus 72 ~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~~ 150 (381)
T TIGR00837 72 TGNIIAGLSLLFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKIIA 150 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHH
Confidence 99999888777778888888887665554321 122333333333434444444 334556666665554443322
Q ss_pred HHHhhhhhhhcCCCCCCC-c-CCCchHHHHHHHHHHHHHHhcCceehhhhhhhcc-CCccchHHHHHHHHHHHHHHHhhH
Q 011966 206 AWYLTIAAFVHGQVDGVT-H-SGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMW-KPQKFKSIYLLATLYVFTLTIPSA 282 (474)
Q Consensus 206 ~~~i~~~~~~~g~~~~~~-~-~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk-~p~~~~~~~~~s~~~~~~~y~~~g 282 (474)
.+.+++....+.+.++.. . ..+..+.+++.+++...++|++|.+++++.++++ ++++.+|....+..+++++|+.+.
T Consensus 151 l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~ 230 (381)
T TIGR00837 151 FALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQ 230 (381)
T ss_pred HHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 212222222222211111 0 1123566788899999999999999999999997 555668999999999999998775
Q ss_pred hHHHHhhcccccc-----ccc------cccC-CCCchHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHcCCCCccchhh
Q 011966 283 AAVYWAFGDQLLT-----HSN------AFSL-LPRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVGMHDTKSICLR 350 (474)
Q Consensus 283 i~Gy~~fG~~~~~-----~~~------il~~-l~~~~~~~i~~i~~~i~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~ 350 (474)
.......+.+... .++ ...+ .+++....+..++..+.+.+++.-.....+|...+.++.+++ +.+|
T Consensus 231 ~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~--~~~~ 308 (381)
T TIGR00837 231 LATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS--KKGR 308 (381)
T ss_pred HHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--cCCC
Confidence 5554444332200 011 1111 233334567888888999999999999999998888875332 2336
Q ss_pred hhhhHhHHHHHHHHHHhcCCch-hHHHhhhhHHHhhHHHhhhHHHHHHHhcch
Q 011966 351 ALARLPVVIPIWFLAIIFPFFG-PINSAVGALLVSFTVYIIPALAHMLTYRSA 402 (474)
Q Consensus 351 ~~~r~~~v~~~~~iA~~ip~~~-~i~~lvGa~~~~~l~filP~l~~l~~~~~~ 402 (474)
+....+..+.+.++|.+.|+.. ..++..| +....+.+++|++++++.+|++
T Consensus 309 ~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~~ 360 (381)
T TIGR00837 309 FKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKKF 360 (381)
T ss_pred chhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 6667777788999999999855 8999999 8899999999999999976543
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.83 E-value=5.4e-18 Score=169.83 Aligned_cols=364 Identities=12% Similarity=0.095 Sum_probs=232.2
Q ss_pred CchHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHH
Q 011966 44 GSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 123 (474)
Q Consensus 44 ~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 123 (474)
.+.|. +.+..+.+|+|+|+||......|.++.+++++++..+++++++.+.+.....++ +..++.++
T Consensus 21 d~~W~--l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~-----------~~~~i~~v 87 (443)
T PRK13629 21 DTTWT--LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSN-----------PSGNITET 87 (443)
T ss_pred cchHH--HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----------CCCCHHHH
Confidence 34453 889999999999999999999999999999999999999999888876433211 11269999
Q ss_pred HHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccc-----ccc-ccCcchhhhhhhHHHhhhcccCC--CCCchHHH
Q 011966 124 LDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYY-----IND-NLDKRTWTYIFGACCATTVFIPS--FHNYRLWS 195 (474)
Q Consensus 124 ~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~-----~~~-~~~~~~~~~i~~~i~~pl~~~~~--l~~l~~~s 195 (474)
+++.+||+|+.+..+...+.++..+.+|.....+.+.. ++. +.++....+++.+++.......+ +.+....-
T Consensus 88 ~~~~lG~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~L 167 (443)
T PRK13629 88 VEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYL 167 (443)
T ss_pred HHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999988888888888897655443322 111 33333333444444444444332 22333333
Q ss_pred HHHHHHHHHHHHHhhhhhhhcC-CCCCCC-----cCCC-chHHHHHHHHHHHHHHhcCceehhhhhhh----cc-----C
Q 011966 196 FLGLGMTTYTAWYLTIAAFVHG-QVDGVT-----HSGP-STLVLYFTGATNILYTFGGHAVTVEIMHA----MW-----K 259 (474)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~~~~g-~~~~~~-----~~~~-~~~~~~~~~~~i~~faf~~h~~~~~i~~~----mk-----~ 259 (474)
....+.++....+..+ --++. ...+.+ .... ......+.++|+++|||+.|+.+|++... .+ +
T Consensus 168 v~~~i~~l~~l~~~Li-P~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~ 246 (443)
T PRK13629 168 VWPFIASLVLISLSLI-PYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRD 246 (443)
T ss_pred HHHHHHHHHHHHHHHH-HHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccc
Confidence 3333332221111111 00111 000001 0001 11245778999999999999999999998 43 2
Q ss_pred --CccchHHHHHHHHHHHHHHHhhHhHHHHhhcccc-----cccccccc----CCCC---------chHHHHHHHHHHHH
Q 011966 260 --PQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQL-----LTHSNAFS----LLPR---------SRWRDVAVILMLIH 319 (474)
Q Consensus 260 --p~~~~~~~~~s~~~~~~~y~~~gi~Gy~~fG~~~-----~~~~~il~----~l~~---------~~~~~i~~i~~~i~ 319 (474)
++|-+++..++..+..++|+..-+..-..-+++. +.+.+++. .+++ +....+..++..++
T Consensus 247 ~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~A 326 (443)
T PRK13629 247 FTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVA 326 (443)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHH
Confidence 3445788888888888877765444444333322 11223222 2333 22346777888889
Q ss_pred HHHhhhhhhhhHHHHHHHHHc----CCCC---ccchhhhhhhHhHHHHHHHHHHhcCCchhHHHhhhhHHHhhHHHhhhH
Q 011966 320 QFITFGFACTPLYFVWEKVVG----MHDT---KSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPA 392 (474)
Q Consensus 320 l~~s~pl~~~p~~~~~~~~~~----~~~~---~~~~~~~~~r~~~v~~~~~iA~~ip~~~~i~~lvGa~~~~~l~filP~ 392 (474)
+.+||-=.....+|.++.... .+++ +.+..+........+.+++++..-|++-.+++-+|+-....+.|++|.
T Consensus 327 I~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~ 406 (443)
T PRK13629 327 IFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPM 406 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHH
Confidence 999998888888887776652 1211 223335556667778889999999999999998888888899999999
Q ss_pred HHHHHHhcchhhhccccCCCCcccccchhhHHHHHHHHHHHHHHHH
Q 011966 393 LAHMLTYRSASARQNSAEKLPFFLPSWTAMYVVNTFILVWVLVVGF 438 (474)
Q Consensus 393 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~ 438 (474)
..-.|.-.-++-| . +..|+++++ .|++.+
T Consensus 407 y~i~kvp~l~~yr------------~----~~~n~fv~~-~Gl~~i 435 (443)
T PRK13629 407 YAIRKAPSLAKYR------------G----RLDNVFVTV-IGLLTI 435 (443)
T ss_pred HHHHccHHHHHhC------------C----CchhHHHHH-HHHHHH
Confidence 8776653322111 1 234788887 566654
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.74 E-value=4.5e-16 Score=157.11 Aligned_cols=339 Identities=11% Similarity=0.033 Sum_probs=214.5
Q ss_pred HHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHHHhhc
Q 011966 49 AWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLL 128 (474)
Q Consensus 49 a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~ 128 (474)
=.+.+..+++|+|+|++|....+.||+..++..++...+++++..++.+.....+ +++ .++.|+.++.+
T Consensus 8 w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~---------~p~--~~i~~~~~~~f 76 (397)
T TIGR00814 8 WMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSK---------NPC--EDITEVVEEHF 76 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CCC--CCHHHHHHHHc
Confidence 3578899999999999999999999998888888777777888777776533221 111 16899999999
Q ss_pred CccchhhhHhhHHHHHHHHHHHHHHhhcccccc-----cccccCcchhhhhhhHHHhhhcccCCCCCchHHHHHHHHHHH
Q 011966 129 GPYWKAVGLAFNCTFLLFGSVIQLIACASNIYY-----INDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFLGLGMTT 203 (474)
Q Consensus 129 G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~-----~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~ 203 (474)
||+++.+..+....+.+..+.+|.....+.+.. ...+.+.+.+..+..++.+-.......+.+.+++.+-+...+
T Consensus 77 Gk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~i 156 (397)
T TIGR00814 77 GKNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLV 156 (397)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence 999999999888888888888887655443321 112222232222211122111222233444444433332222
Q ss_pred HHHHHhhhhhhhcCCCCCCCcCC--CchHHHHHHHHHHHHHHhcCceehhhhhhh----ccC----CccchHHHHHHHHH
Q 011966 204 YTAWYLTIAAFVHGQVDGVTHSG--PSTLVLYFTGATNILYTFGGHAVTVEIMHA----MWK----PQKFKSIYLLATLY 273 (474)
Q Consensus 204 ~~~~~i~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~i~~faf~~h~~~~~i~~~----mk~----p~~~~~~~~~s~~~ 273 (474)
...+.+....+.+-+.++....+ ...+.++..+++..++||.+|+++|++..+ .++ ++|.+++...+..+
T Consensus 157 i~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i 236 (397)
T TIGR00814 157 LILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLI 236 (397)
T ss_pred HHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 11111122222211222221111 124567889999999999999999999833 332 33457888888888
Q ss_pred HHHHHHhhHhHHHHhhcccccc---ccc--ccc----CCCCchHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHc----
Q 011966 274 VFTLTIPSAAAVYWAFGDQLLT---HSN--AFS----LLPRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVG---- 340 (474)
Q Consensus 274 ~~~~y~~~gi~Gy~~fG~~~~~---~~~--il~----~l~~~~~~~i~~i~~~i~l~~s~pl~~~p~~~~~~~~~~---- 340 (474)
.+++|+..-.......+++... +.| ++. ..+.+....+..++..+++.+||--.....+|.+++.+.
T Consensus 237 ~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~ 316 (397)
T TIGR00814 237 LVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLK 316 (397)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 8887776555555544443310 112 222 233333446778888889999998888888888877661
Q ss_pred CCCC--ccchhhhhhhHhHHHHHHHHHHhcCCchhHHHhhhhHHHhhHHHhhhHHHHHHH
Q 011966 341 MHDT--KSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHMLT 398 (474)
Q Consensus 341 ~~~~--~~~~~~~~~r~~~v~~~~~iA~~ip~~~~i~~lvGa~~~~~l~filP~l~~l~~ 398 (474)
.+++ +++..+........+.++.++..-|++-.+++-+|+-....+.|++|...-.|.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v 376 (397)
T TIGR00814 317 MKGKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKV 376 (397)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence 1111 223334455666778889999999999999997777777889999999777665
No 16
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.38 E-value=1.1e-10 Score=117.46 Aligned_cols=338 Identities=14% Similarity=0.103 Sum_probs=182.3
Q ss_pred CCchHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHH
Q 011966 43 GGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 122 (474)
Q Consensus 43 ~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 122 (474)
+-|.+|.++.+..+++|+|++.+|....+.+---+.+..++.++......++..+...++++ . +..|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~-----------~--~~~~ 68 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE-----------K--NFSE 68 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC-----------C--CHHH
Confidence 34778999999999999999999998766443335555666666666666666665444331 1 4678
Q ss_pred HHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccc-cccccCcchhhhhhh-HHHhhhcccCCCCCchHHHHHHHH
Q 011966 123 VLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYY-INDNLDKRTWTYIFG-ACCATTVFIPSFHNYRLWSFLGLG 200 (474)
Q Consensus 123 l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~-~~~~~~~~~~~~i~~-~i~~pl~~~~~l~~l~~~s~~~~~ 200 (474)
..++.+||+...+.......+....+.......++.+.. +.++. ..|.+... ++..-....+.++...+.+.+-..
T Consensus 69 ~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t--p~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~ 146 (359)
T TIGR00912 69 ILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADFIKTYLLPRT--PIIVIIILIIIVSIYIVRKGIEVLLRTAEILLI 146 (359)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 888999999877766555555444433222222232221 12222 23322211 111111223345555555544433
Q ss_pred HHHHH-HHHhhhhhhhcCCCCCCCcCCCchHHHHHHHH-HHHHHHhcCceehhhhhhhccCCccchHHHHHHHHHHHHHH
Q 011966 201 MTTYT-AWYLTIAAFVHGQVDGVTHSGPSTLVLYFTGA-TNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLT 278 (474)
Q Consensus 201 ~~~~~-~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~i~~faf~~h~~~~~i~~~mk~p~~~~~~~~~s~~~~~~~y 278 (474)
..+.. .+++......+.+.++...-.+.++.+.+.+. +...++|.+...+.....++|+|++.+|....+..++.++|
T Consensus 147 ~~i~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~ly 226 (359)
T TIGR00912 147 IFLILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLY 226 (359)
T ss_pred HHHHHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHH
Confidence 32221 11111111111112221111123344444443 36788898888888888999999999999999999999999
Q ss_pred HhhHhHHHHhhccccccc--ccc---ccCCCCchH----HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHcCCCCccchh
Q 011966 279 IPSAAAVYWAFGDQLLTH--SNA---FSLLPRSRW----RDVAVILMLIHQFITFGFACTPLYFVWEKVVGMHDTKSICL 349 (474)
Q Consensus 279 ~~~gi~Gy~~fG~~~~~~--~~i---l~~l~~~~~----~~i~~i~~~i~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~ 349 (474)
...-+.....+|.+...+ -+. .+...-+++ -.+.-..-.+..+.+..+..+.....+.+.++.++. +
T Consensus 227 ~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~----~ 302 (359)
T TIGR00912 227 ILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKY----S 302 (359)
T ss_pred HHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc----c
Confidence 887777777777654110 011 111111111 112333344555666666777777888888764332 1
Q ss_pred hhhhhHhHHHHHHHHHHhcCCchhHHHhhh---hHHHhhHHHhhhHHHHHHHhcch
Q 011966 350 RALARLPVVIPIWFLAIIFPFFGPINSAVG---ALLVSFTVYIIPALAHMLTYRSA 402 (474)
Q Consensus 350 ~~~~r~~~v~~~~~iA~~ip~~~~i~~lvG---a~~~~~l~filP~l~~l~~~~~~ 402 (474)
..+.-.+. ....++ ..||-..-..... ...+....+++|.++.+...-|+
T Consensus 303 ~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~i~~ik~ 355 (359)
T TIGR00912 303 ILILPVLM--VIFSIS-FFPDSSNQLFDYLEFLPIIAIVFFLLLPLILFIIVKIKN 355 (359)
T ss_pred hhHHHHHH--HHHHHH-HccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222222 222222 3565222122222 23345677789998877765443
No 17
>PRK10249 phenylalanine transporter; Provisional
Probab=99.37 E-value=2.4e-09 Score=111.42 Aligned_cols=229 Identities=11% Similarity=0.052 Sum_probs=118.6
Q ss_pred cCCchHHHHHHHHHhhhhhhhchhH-HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccH
Q 011966 42 HGGSVYDAWFSCASNQVAQVLLTLP-YSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 120 (474)
Q Consensus 42 ~~~s~~~a~~~l~~~~iG~GiLsLP-~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 120 (474)
++.+.++..+-.++.++|+|++..| .+.+.+|-. .++..++.+++....+.-+.+....+++. . ..
T Consensus 21 r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~-~~l~~li~~~~~~~~~~~~aEl~~~~P~~---------G---g~ 87 (458)
T PRK10249 21 RGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPA-VLLGYGVAGIIAFLIMRQLGEMVVEEPVS---------G---SF 87 (458)
T ss_pred ccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCC---------C---CH
Confidence 4456778888899999999999988 566677753 55566666666555554444443333211 1 24
Q ss_pred HHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcc--cCCCCCchHHHHH-
Q 011966 121 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVF--IPSFHNYRLWSFL- 197 (474)
Q Consensus 121 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~~~l~~l~~~s~~- 197 (474)
....++.+||...++.-....+.............+..+....++.+...+.+++..+...+-+ .|...++..+..+
T Consensus 88 ~~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~lN~~gv~~~~~i~~~~~~i 167 (458)
T PRK10249 88 AHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGETEFWFALI 167 (458)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence 4566788999877655443322221122222222222222222222222222222111111111 2222222222111
Q ss_pred HHHHHHHHHHHhhhh--hhhcCCCCCCC----cC--CCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCccc-hHHHH
Q 011966 198 GLGMTTYTAWYLTIA--AFVHGQVDGVT----HS--GPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKF-KSIYL 268 (474)
Q Consensus 198 ~~~~~~~~~~~i~~~--~~~~g~~~~~~----~~--~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~~-~~~~~ 268 (474)
-+..++.+.+..++. ....+...+.+ .. .+..+.++..++....|+|.|-......-+|+|||+|- ++...
T Consensus 168 kv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~ 247 (458)
T PRK10249 168 KVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVN 247 (458)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHH
Confidence 111111111010110 00011111111 11 13456778888999999999999999999999999884 88888
Q ss_pred HHHHHHHHHHHhhHh
Q 011966 269 LATLYVFTLTIPSAA 283 (474)
Q Consensus 269 ~s~~~~~~~y~~~gi 283 (474)
.++....++|+....
T Consensus 248 ~~~~~~~~~y~~~~~ 262 (458)
T PRK10249 248 QVVYRILLFYIGSLV 262 (458)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888866433
No 18
>PRK15049 L-asparagine permease; Provisional
Probab=99.29 E-value=1e-08 Score=107.64 Aligned_cols=233 Identities=11% Similarity=0.071 Sum_probs=115.7
Q ss_pred cccCCchHHHHHHHHHhhhhhhhchhHH-HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011966 40 LWHGGSVYDAWFSCASNQVAQVLLTLPY-SFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVI 118 (474)
Q Consensus 40 ~~~~~s~~~a~~~l~~~~iG~GiLsLP~-af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 118 (474)
.+++.+.++..+-.+.+++|+|++..|- +++.+|-. +++..++.+++....+.-+.+....+++. .
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~-~il~~li~~i~~~~v~~slaELas~~P~a---------G--- 92 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPA-LALVYLICGLFSFFILRALGELVLHRPSS---------G--- 92 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCC---------C---
Confidence 3455677888899999999999988885 88888863 55666666665555554445443333211 1
Q ss_pred cHHHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhH--HHhhhcccCCCCCchHHHH
Q 011966 119 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGA--CCATTVFIPSFHNYRLWSF 196 (474)
Q Consensus 119 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~--i~~pl~~~~~l~~l~~~s~ 196 (474)
....-.++.+||+..++.-....+.............+....+.....+...|.....+ ++..+- .+..+....+..
T Consensus 93 g~y~y~~~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iN-~~gvk~~~~i~~ 171 (499)
T PRK15049 93 SFVSYAREFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTMN-MIGVKWFAEMEF 171 (499)
T ss_pred CHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 23444567789876654433322211111111111111111111100012234322221 111111 111222222222
Q ss_pred HHHHH-HHHHHHHhhh--hhhhcCCC-----CCCC----c--CCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCcc
Q 011966 197 LGLGM-TTYTAWYLTI--AAFVHGQV-----DGVT----H--SGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK 262 (474)
Q Consensus 197 ~~~~~-~~~~~~~i~~--~~~~~g~~-----~~~~----~--~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~ 262 (474)
..... ++.+..+++. .....+.. .+.. . ..|..+..++.++...+|+|.|-..+...-.|+|||+|
T Consensus 172 ~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r 251 (499)
T PRK15049 172 WFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQT 251 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhh
Confidence 11111 1111111111 11111111 0111 0 11334445566667789999999999999999999988
Q ss_pred -chHHHHHHHHHHHHHHHhhHhHHH
Q 011966 263 -FKSIYLLATLYVFTLTIPSAAAVY 286 (474)
Q Consensus 263 -~~~~~~~s~~~~~~~y~~~gi~Gy 286 (474)
.++....++..+.++|+.......
T Consensus 252 ~iPrAi~~~~~~i~~~yi~~~~~~~ 276 (499)
T PRK15049 252 MVPKAINSVIWRIGLFYVGSVVLLV 276 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 588888888777777876554433
No 19
>TIGR00909 2A0306 amino acid transporter.
Probab=99.27 E-value=1.2e-08 Score=105.44 Aligned_cols=232 Identities=9% Similarity=-0.000 Sum_probs=124.3
Q ss_pred cCCchHHHHHHHHHhhhhhhhchhHHHHH-hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccH
Q 011966 42 HGGSVYDAWFSCASNQVAQVLLTLPYSFS-QLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 120 (474)
Q Consensus 42 ~~~s~~~a~~~l~~~~iG~GiLsLP~af~-~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 120 (474)
++-+.++.+.-.+++++|+|++.+|.... ..|.. ..+..++.+++.........+...++++. + ..
T Consensus 3 r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~l~~li~~~~~~~~a~~~~el~~~~p~~----G--------g~ 69 (429)
T TIGR00909 3 RELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPA-VILSFVLAGLTALFIALVYAELAAMLPVA----G--------SP 69 (429)
T ss_pred ccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCC----C--------cc
Confidence 45578899999999999999999995544 44542 44445555555555444444443333211 1 12
Q ss_pred HHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccc----cccCcch---------h--hhhhhHHHhhhccc
Q 011966 121 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIN----DNLDKRT---------W--TYIFGACCATTVFI 185 (474)
Q Consensus 121 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~----~~~~~~~---------~--~~i~~~i~~pl~~~ 185 (474)
.+-.++.+||+..++......+........+....++.+..+. .+.+... + ..+...+..-..-.
T Consensus 70 y~~~~~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~ 149 (429)
T TIGR00909 70 YTYAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILY 149 (429)
T ss_pred eeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHH
Confidence 2334466898876655544333322222222222222111110 1111111 1 11111111112223
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCCcCCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCcc-ch
Q 011966 186 PSFHNYRLWSFLGLGMTTYTAWYLTIAAFVHGQVDGVTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FK 264 (474)
Q Consensus 186 ~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~-~~ 264 (474)
+..+...+++.+.....+...+.+++.+..+.+.++.+...+....++..++...+|+|.|........+|+|||+| .+
T Consensus 150 ~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip 229 (429)
T TIGR00909 150 LGAKESGKVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIP 229 (429)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCcccccc
Confidence 34455555554444333322212222222222222222222345567788888999999999999999999999976 58
Q ss_pred HHHHHHHHHHHHHHHhhHhHHH
Q 011966 265 SIYLLATLYVFTLTIPSAAAVY 286 (474)
Q Consensus 265 ~~~~~s~~~~~~~y~~~gi~Gy 286 (474)
+....+..++.++|+.......
T Consensus 230 ~ai~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 230 KAIILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988765444
No 20
>PRK10746 putative transport protein YifK; Provisional
Probab=99.27 E-value=2.2e-08 Score=104.20 Aligned_cols=349 Identities=9% Similarity=0.023 Sum_probs=166.5
Q ss_pred cccCCchHHHHHHHHHhhhhhhhchhH-HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011966 40 LWHGGSVYDAWFSCASNQVAQVLLTLP-YSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVI 118 (474)
Q Consensus 40 ~~~~~s~~~a~~~l~~~~iG~GiLsLP-~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 118 (474)
.+++.+.++..+-.+.+++|+|++..| .+.+.+|-. .++..++.+++......-+.+....+++. .
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~-~~l~~~i~g~~~~~v~~~~aEl~~~~P~s---------G--- 74 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPS-VLLAYIIAGLFVFFIMRSMGEMLFLEPVT---------G--- 74 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------C---
Confidence 345567888888999999999999877 777788862 44555555665555554455443333211 1
Q ss_pred cHHHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcc--cCCCCCchHH-H
Q 011966 119 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVF--IPSFHNYRLW-S 195 (474)
Q Consensus 119 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~~~l~~l~~~-s 195 (474)
.+.+-+++.+||.+..++...................+..+....+..+...|..+..+++..+-+ .|...++... +
T Consensus 75 g~~~y~~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~~~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~ 154 (461)
T PRK10746 75 SFAVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALIAVALVALANLAAVRLYGEIEFWFA 154 (461)
T ss_pred CHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 355667778999877655443322212222222222222222222333333333222222111111 2222222211 1
Q ss_pred HHHHHHHHHHHHHh---hhhhhhc-CCCCCCC----cC--CCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCccc-h
Q 011966 196 FLGLGMTTYTAWYL---TIAAFVH-GQVDGVT----HS--GPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKF-K 264 (474)
Q Consensus 196 ~~~~~~~~~~~~~i---~~~~~~~-g~~~~~~----~~--~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~~-~ 264 (474)
.+.+..++...++. +...... +...+.+ +. .+..+.++..++....|+|.|-..+...-.|+|||+|- +
T Consensus 155 ~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP 234 (461)
T PRK10746 155 MIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLR 234 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHH
Confidence 11111111111111 1111111 1111111 11 13456778889999999999999999999999999874 8
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHHhhcccccc--cccc---ccCCCCchHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 011966 265 SIYLLATLYVFTLTIPSAAAVYWAFGDQLLT--HSNA---FSLLPRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVV 339 (474)
Q Consensus 265 ~~~~~s~~~~~~~y~~~gi~Gy~~fG~~~~~--~~~i---l~~l~~~~~~~i~~i~~~i~l~~s~pl~~~p~~~~~~~~~ 339 (474)
++...++..+.++|+............+..+ +++. ..+...+....+.+.+..+..+.+.--.+....+.+...-
T Consensus 235 ~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a 314 (461)
T PRK10746 235 SAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALA 314 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777777777776433332222222100 0010 0111111122334444444444443332222222222221
Q ss_pred c---------CCCCccchhhhhh--hHhHHHHHHHHHHhcCCchhHHHhhhhHH--HhhHHHhhhHHHHHHHhcch
Q 011966 340 G---------MHDTKSICLRALA--RLPVVIPIWFLAIIFPFFGPINSAVGALL--VSFTVYIIPALAHMLTYRSA 402 (474)
Q Consensus 340 ~---------~~~~~~~~~~~~~--r~~~v~~~~~iA~~ip~~~~i~~lvGa~~--~~~l~filP~l~~l~~~~~~ 402 (474)
+ +.+++ ...+..+ .....++...+....|+-+.+++.+-+++ +..+.++++++-+++++|++
T Consensus 315 ~~g~lP~~~~~~~~~-g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~ 389 (461)
T PRK10746 315 KNRQLPAAMAKVSRH-GVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAH 389 (461)
T ss_pred hCCCcCHHHHHhCCC-CCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 11111 1122222 21122222334445566555555444333 34788899999999987765
No 21
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.25 E-value=3.6e-08 Score=102.48 Aligned_cols=229 Identities=12% Similarity=0.106 Sum_probs=123.0
Q ss_pred cccCCchHHHHHHHHHhhhhhhhchhH-HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011966 40 LWHGGSVYDAWFSCASNQVAQVLLTLP-YSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVI 118 (474)
Q Consensus 40 ~~~~~s~~~a~~~l~~~~iG~GiLsLP-~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 118 (474)
..++.+.++..+..+++++|+|++.+| .+.+.+|-. +++..++.+++....+....+....+++. .
T Consensus 10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~P~~---------G--- 76 (452)
T TIGR01773 10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVANPDT---------G--- 76 (452)
T ss_pred HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCC---------C---
Confidence 445568888999999999999999999 888888864 66666666666555444455443333211 1
Q ss_pred cHHHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhh-hcccCCCCCchHHHHH
Q 011966 119 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCAT-TVFIPSFHNYRLWSFL 197 (474)
Q Consensus 119 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~p-l~~~~~l~~l~~~s~~ 197 (474)
...+.+++.+||...++....................+..+....++. ..|.....++.+. ..-.+..+....+...
T Consensus 77 g~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~ 154 (452)
T TIGR01773 77 SFSTYADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDI--PLWLFSLILTIVLTLTNLYSVKSYGEFEFW 154 (452)
T ss_pred CHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC--cHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 245566788999877665544333222222222222222222222222 2333222211111 1112223333333322
Q ss_pred HHHHHH----HHHHHhhhhhh-hcCC--CCCCC----cC--CCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCcc-c
Q 011966 198 GLGMTT----YTAWYLTIAAF-VHGQ--VDGVT----HS--GPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-F 263 (474)
Q Consensus 198 ~~~~~~----~~~~~i~~~~~-~~g~--~~~~~----~~--~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~-~ 263 (474)
....-+ .+.+..++... ..+. ..+.+ .. .|..+.+++.++....|+|.|-......-+|+|||+| .
T Consensus 155 ~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~i 234 (452)
T TIGR01773 155 FALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSI 234 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHH
Confidence 211111 11111111011 1111 11111 11 1344557888899999999999999999999999987 5
Q ss_pred hHHHHHHHHHHHHHHHhhHh
Q 011966 264 KSIYLLATLYVFTLTIPSAA 283 (474)
Q Consensus 264 ~~~~~~s~~~~~~~y~~~gi 283 (474)
++....+.....++|+....
T Consensus 235 PrAi~~~~~~~~~~y~l~~~ 254 (452)
T TIGR01773 235 TRATNSVIWRIIVFYLGSIF 254 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88877777777777876533
No 22
>PRK10655 potE putrescine transporter; Provisional
Probab=99.21 E-value=5.5e-08 Score=100.71 Aligned_cols=230 Identities=13% Similarity=0.006 Sum_probs=117.3
Q ss_pred cCCchHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHH
Q 011966 42 HGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 121 (474)
Q Consensus 42 ~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 121 (474)
++-+.++.+...+++++|+|++.+|..+++.|- .+++..++.+++.........+....+++. + ...
T Consensus 6 ~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~----G--------G~y 72 (438)
T PRK10655 6 NKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKS----G--------GMG 72 (438)
T ss_pred CcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCC----C--------chH
Confidence 345788999999999999999999999988886 356666666665554444444332222210 1 123
Q ss_pred HHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccc-cccccCcchhhhhhhHHHhhhcccCCCCCchHHHH---H
Q 011966 122 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYY-INDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSF---L 197 (474)
Q Consensus 122 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~-~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~---~ 197 (474)
.-.++.+||....+.................+...+.+.. +....+...+.++..+++..+..+ |....+..+. +
T Consensus 73 ~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~l-n~~g~~~~~~i~~i 151 (438)
T PRK10655 73 GYAEYAFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQICLATIGVLWLCTVA-NFGGARITGQISSV 151 (438)
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH-HHhCHHHHHHHHHH
Confidence 3345679998765544332222111111111111111111 111111111111111111121111 2222333322 2
Q ss_pred HHHHHHHHHHHhhhhhhhcCCCCC----CCcCCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCcc-chHHHHHHHH
Q 011966 198 GLGMTTYTAWYLTIAAFVHGQVDG----VTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKSIYLLATL 272 (474)
Q Consensus 198 ~~~~~~~~~~~i~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~-~~~~~~~s~~ 272 (474)
.....+...+++.+......+.++ .+......+.++..++....|+|.|-.....+-+|+|||+| .+|....+..
T Consensus 152 ~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~ 231 (438)
T PRK10655 152 TVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTL 231 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHH
Confidence 222111111111111111111111 11111122356667788899999999999999999999986 5999999999
Q ss_pred HHHHHHHhhHhHH
Q 011966 273 YVFTLTIPSAAAV 285 (474)
Q Consensus 273 ~~~~~y~~~gi~G 285 (474)
++.++|+......
T Consensus 232 ~~~~~Y~l~~~~~ 244 (438)
T PRK10655 232 GAAVIYIVSTNVI 244 (438)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998765443
No 23
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.20 E-value=7.4e-08 Score=100.60 Aligned_cols=231 Identities=12% Similarity=0.089 Sum_probs=116.7
Q ss_pred cccCCchHHHHHHHHHhhhhhhhchhH-HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011966 40 LWHGGSVYDAWFSCASNQVAQVLLTLP-YSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVI 118 (474)
Q Consensus 40 ~~~~~s~~~a~~~l~~~~iG~GiLsLP-~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 118 (474)
.++..+.++...-.+++++|+|++-.| .+++++|. ..+...++++++......-+.+. ... .+ .+.
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl----~s~-~~---~~~---- 84 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGEL----LLS-NL---EYK---- 84 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHH----HHh-cC---CCC----
Confidence 555667888888899999999999987 68888887 34555555566554444333332 211 00 111
Q ss_pred cHHHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcccCCCCCchHHHHHH
Q 011966 119 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFLG 198 (474)
Q Consensus 119 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 198 (474)
.+.+.+++.+||...++.-..................+..+....+..+...+.++...++..+- ....+....+..+.
T Consensus 85 ~~~~ya~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~~~~~~~~~~~~~~~~iN-~~g~~~~~~i~~~~ 163 (469)
T PRK11049 85 SFSDFASDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDLSDWVASLAVVLLLLSLN-LATVKMFGEMEFWF 163 (469)
T ss_pred cHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHH
Confidence 34567788899987766554443322111111111111111111222222222121111111111 11222222222221
Q ss_pred HHHHHHHHHHhhhhhh--h-cC--CCC----CC----CcC--CCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCcc-
Q 011966 199 LGMTTYTAWYLTIAAF--V-HG--QVD----GV----THS--GPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK- 262 (474)
Q Consensus 199 ~~~~~~~~~~i~~~~~--~-~g--~~~----~~----~~~--~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~- 262 (474)
...-+...+.+++.++ . .+ .++ +. +.. .|..+.+++.++....|+|.|-......-+|+|||+|
T Consensus 164 ~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~ 243 (469)
T PRK11049 164 AMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKS 243 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhH
Confidence 1111111111111111 0 11 111 11 111 1344567888999999999999999999999999988
Q ss_pred chHHHHHHHHHHHHHHHhhHhH
Q 011966 263 FKSIYLLATLYVFTLTIPSAAA 284 (474)
Q Consensus 263 ~~~~~~~s~~~~~~~y~~~gi~ 284 (474)
.++....+...+.++|+.....
T Consensus 244 iPrai~~~~~~~~~~y~l~~~~ 265 (469)
T PRK11049 244 LPRAINSIPIRIIMFYVFALIV 265 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4777766565666677654443
No 24
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.20 E-value=7e-08 Score=100.39 Aligned_cols=227 Identities=11% Similarity=0.039 Sum_probs=113.4
Q ss_pred cccCCchHHHHHHHHHhhhhhhhchhH-HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011966 40 LWHGGSVYDAWFSCASNQVAQVLLTLP-YSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVI 118 (474)
Q Consensus 40 ~~~~~s~~~a~~~l~~~~iG~GiLsLP-~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 118 (474)
..++.+.++..+-.+++++|+|++-.| .+.+++|- ..++..++.+++....+.-+.+....++. ..
T Consensus 10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~-----------aG- 76 (456)
T PRK10238 10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPV-----------AG- 76 (456)
T ss_pred hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------CC-
Confidence 445557778888999999999998888 56666664 34444555555544444444443322221 11
Q ss_pred cHHHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcccCCCCCchHHHHHH
Q 011966 119 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFLG 198 (474)
Q Consensus 119 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 198 (474)
.+.+-.++.+||...++.-..................++.+....++.+...+.++...+...+-+ ...+....+..+.
T Consensus 77 g~y~~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~lN~-~gv~~~~~~~~~~ 155 (456)
T PRK10238 77 SFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAINL-TNVKVFGEMEFWF 155 (456)
T ss_pred CHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHH
Confidence 234445667999877665544433322222233222232222222333322222222221111111 1112222222221
Q ss_pred HHH----HHHHHHHhhhhhhh-cCCCC-CC----CcC--CCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCcc-chH
Q 011966 199 LGM----TTYTAWYLTIAAFV-HGQVD-GV----THS--GPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKS 265 (474)
Q Consensus 199 ~~~----~~~~~~~i~~~~~~-~g~~~-~~----~~~--~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~-~~~ 265 (474)
... .+...++.+..... .+.++ .. +.. .|..+.++..+++...|+|.|-......-+|+|||+| .++
T Consensus 156 ~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPr 235 (456)
T PRK10238 156 AIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPK 235 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHH
Confidence 111 11110000011011 11111 11 111 1334556777788899999999999999999999987 588
Q ss_pred HHHHHHHHHHHHHHh
Q 011966 266 IYLLATLYVFTLTIP 280 (474)
Q Consensus 266 ~~~~s~~~~~~~y~~ 280 (474)
....+.....+.|+.
T Consensus 236 Ai~~~~~~i~~~y~~ 250 (456)
T PRK10238 236 ATNQVIYRILIFYIG 250 (456)
T ss_pred HHHHHHHHHHHHHHH
Confidence 877666666666654
No 25
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.15 E-value=3.3e-07 Score=95.42 Aligned_cols=229 Identities=12% Similarity=0.081 Sum_probs=118.2
Q ss_pred cccCCchHHHHHHHHHhhhhhhhchhHH-HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
Q 011966 40 LWHGGSVYDAWFSCASNQVAQVLLTLPY-SFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVI 118 (474)
Q Consensus 40 ~~~~~s~~~a~~~l~~~~iG~GiLsLP~-af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~ 118 (474)
.++..+.++.+...+.+++|+|++.+|- +.+.+|-. .++..++.+++.......+.+...++++. .
T Consensus 7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~-~~l~~~i~~i~~~~~a~~~aEl~s~~P~~---------G--- 73 (457)
T PRK10580 7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPS-VLLAYIIGGVAAYIIMRALGEMSVHNPAA---------S--- 73 (457)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCC---------C---
Confidence 3344688899999999999999999985 46677753 46666666666566555555443333211 1
Q ss_pred cHHHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcccCCCCCchHHHHHH
Q 011966 119 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFLG 198 (474)
Q Consensus 119 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 198 (474)
...+-.++.+||...++......+.............+.....+.++.+...|.+...++... .-.+..+.........
T Consensus 74 g~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-ln~~gv~~~~~~~~~~ 152 (457)
T PRK10580 74 SFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICA-VNLMSVKVFGELEFWF 152 (457)
T ss_pred CHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH-HHHccchhHHHHHHHH
Confidence 223345677999877665544333222222221112221111122232333332222121111 1222223333322211
Q ss_pred HHHHH----HHHH---Hhhhhhhhc-CCCCCC----Cc--CCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCcc-c
Q 011966 199 LGMTT----YTAW---YLTIAAFVH-GQVDGV----TH--SGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-F 263 (474)
Q Consensus 199 ~~~~~----~~~~---~i~~~~~~~-g~~~~~----~~--~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~-~ 263 (474)
....+ ...+ .++.....+ +.+.+. +. ..+..+.+++.++....|+|.|-......-+|+|||+| .
T Consensus 153 ~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~i 232 (457)
T PRK10580 153 SFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSI 232 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHH
Confidence 11111 0000 011111111 111111 11 11344557778888999999999999999999999988 4
Q ss_pred hHHHHHHHHHHHHHHHhhH
Q 011966 264 KSIYLLATLYVFTLTIPSA 282 (474)
Q Consensus 264 ~~~~~~s~~~~~~~y~~~g 282 (474)
++....+.....++|+...
T Consensus 233 PrAi~~~~~~~~~~y~~~~ 251 (457)
T PRK10580 233 PRAINSVPMRILVFYVGTL 251 (457)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777776666666776553
No 26
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.12 E-value=3.1e-07 Score=95.29 Aligned_cols=234 Identities=12% Similarity=0.047 Sum_probs=116.5
Q ss_pred cccCCchHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 011966 40 LWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQ 119 (474)
Q Consensus 40 ~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 119 (474)
..++.+.++++...+++++|+|++.+|....+.|.. .+...++.++..........+....+++. + . .
T Consensus 6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P~a----G-----G--~ 73 (445)
T PRK10644 6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLDPSP----G-----G--S 73 (445)
T ss_pred cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCC----C-----C--h
Confidence 334567889999999999999999999988887632 33334433444333333333332222211 1 1 2
Q ss_pred HHHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcch-hhhhhhHHHhhhcc--cCCCCCchHHHH
Q 011966 120 WFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRT-WTYIFGACCATTVF--IPSFHNYRLWSF 196 (474)
Q Consensus 120 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~-~~~i~~~i~~pl~~--~~~l~~l~~~s~ 196 (474)
|. -.++.+||...++.....................+......+..+... ..++..++++.+.. .+..+...++..
T Consensus 74 y~-~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~ 152 (445)
T PRK10644 74 YA-YARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQA 152 (445)
T ss_pred hH-HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 22 256679998766543322221111111111111111111111111121 11111122222222 222233333333
Q ss_pred HHHHHHHHHHHHhhhhhhh--cCC--CCCCCcCCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCcc-chHHHHHHH
Q 011966 197 LGLGMTTYTAWYLTIAAFV--HGQ--VDGVTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKSIYLLAT 271 (474)
Q Consensus 197 ~~~~~~~~~~~~i~~~~~~--~g~--~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~-~~~~~~~s~ 271 (474)
+.....+...+.+...... ++. .++.+..+...+..+..++....|+|.|-......-+|+|||+| .++....+.
T Consensus 153 i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~ 232 (445)
T PRK10644 153 VATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGV 232 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHH
Confidence 2222211111111111111 111 11111111223456666778899999999999999999999976 599999999
Q ss_pred HHHHHHHHhhHhHHH
Q 011966 272 LYVFTLTIPSAAAVY 286 (474)
Q Consensus 272 ~~~~~~y~~~gi~Gy 286 (474)
.++.++|+.+.+.-.
T Consensus 233 ~i~~v~Y~l~~~~~~ 247 (445)
T PRK10644 233 LIAAVCYVLSSTAIM 247 (445)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999987766533
No 27
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.11 E-value=3.8e-07 Score=95.33 Aligned_cols=232 Identities=12% Similarity=0.053 Sum_probs=115.5
Q ss_pred ccCCchHHHHHHHHHhhhhhhhchhH-HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 011966 41 WHGGSVYDAWFSCASNQVAQVLLTLP-YSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQ 119 (474)
Q Consensus 41 ~~~~s~~~a~~~l~~~~iG~GiLsLP-~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 119 (474)
++..+.++...-.++.++|+|++..| .+.+.+|-...++..++.+++......-+.+....+++. + .
T Consensus 13 ~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~a----G--------G 80 (471)
T PRK11387 13 KRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPET----G--------A 80 (471)
T ss_pred hhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----C--------C
Confidence 34457888889999999999999887 456777753335555555665555555455443333311 1 2
Q ss_pred HHHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcccCCCCCchHHHHH--
Q 011966 120 WFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFL-- 197 (474)
Q Consensus 120 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~-- 197 (474)
+..-.++.+||.........................+..+....+..+...+.++..+++..+ -.+..+........
T Consensus 81 ~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~i-n~~gvk~~~~~~~~~~ 159 (471)
T PRK11387 81 FHVYAARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQVPVWPWCLLFCALIFGL-NVVSTRFFAEGEFWFS 159 (471)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCcHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHH
Confidence 334556678988765443322221111111111111111111122222112222221221111 12222222222211
Q ss_pred --HHHHHHHHHHHhhhhhh---h--cCCC-CCCCc---CC--CchHHHHHHHHHHHHHHhcCceehhhhhhhccCCcc-c
Q 011966 198 --GLGMTTYTAWYLTIAAF---V--HGQV-DGVTH---SG--PSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-F 263 (474)
Q Consensus 198 --~~~~~~~~~~~i~~~~~---~--~g~~-~~~~~---~~--~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~-~ 263 (474)
.....+.+.+..++... . .+.. +..+. .+ |....+++.++....|+|.|-......-+|+|||+| .
T Consensus 160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~i 239 (471)
T PRK11387 160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVI 239 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHH
Confidence 11111111000000000 0 0111 11111 11 233345677777889999999999999999999988 5
Q ss_pred hHHHHHHHHHHHHHHHhhHhHH
Q 011966 264 KSIYLLATLYVFTLTIPSAAAV 285 (474)
Q Consensus 264 ~~~~~~s~~~~~~~y~~~gi~G 285 (474)
++....+...+.++|+...+..
T Consensus 240 PrAi~~~~~~~~~~y~~~~~~~ 261 (471)
T PRK11387 240 PVAIRTTIARLVIFFVGTVLVL 261 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887765543
No 28
>PRK11021 putative transporter; Provisional
Probab=99.10 E-value=1.3e-07 Score=97.15 Aligned_cols=223 Identities=9% Similarity=0.001 Sum_probs=115.0
Q ss_pred chHHHHHHHHHhhhhhhhchhH-HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHH
Q 011966 45 SVYDAWFSCASNQVAQVLLTLP-YSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 123 (474)
Q Consensus 45 s~~~a~~~l~~~~iG~GiLsLP-~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 123 (474)
+.++++.-.+++++|+|++.+| .+.+.+|- ..++..++.++..........+....+++. + ....-
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~a----G--------G~y~y 68 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHA----G--------GPAHF 68 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----C--------CHHHh
Confidence 4678888999999999999999 45555563 345555555555544444444443333311 1 12334
Q ss_pred HHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhh-HHHhhhcccCCCCCchHHHHHHHHHH
Q 011966 124 LDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFG-ACCATTVFIPSFHNYRLWSFLGLGMT 202 (474)
Q Consensus 124 ~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~-~i~~pl~~~~~l~~l~~~s~~~~~~~ 202 (474)
.++.+||+..+......................+.+....+..+...+.+... .+.+-+.-.+..+...++..+.....
T Consensus 69 ~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~ 148 (410)
T PRK11021 69 VGMAFGPRLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGWSSWQLLLAELLTLALLWLLNLRGASSSANLQTVIALLI 148 (410)
T ss_pred HHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 55679998766544332221111111111111111111111111111211111 11111112222233333322211111
Q ss_pred HHHHHHhhhhhhhcCC--CCCCCc--CCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCcc-chHHHHHHHHHHHHH
Q 011966 203 TYTAWYLTIAAFVHGQ--VDGVTH--SGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKSIYLLATLYVFTL 277 (474)
Q Consensus 203 ~~~~~~i~~~~~~~g~--~~~~~~--~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~-~~~~~~~s~~~~~~~ 277 (474)
+.. +... ...+. ..+... ..+.++.++..++....|+|.|.......-+|+|||+| .++....+..++.++
T Consensus 149 ~~i--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~l 224 (410)
T PRK11021 149 VAL--VVAI--WWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLV 224 (410)
T ss_pred HHH--HHHH--HHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHH
Confidence 111 1111 11111 111111 12345677888899999999999999999999999976 599999999999999
Q ss_pred HHhhHhH
Q 011966 278 TIPSAAA 284 (474)
Q Consensus 278 y~~~gi~ 284 (474)
|+...+.
T Consensus 225 Yil~~~~ 231 (410)
T PRK11021 225 YWACTVV 231 (410)
T ss_pred HHHHHHH
Confidence 9886654
No 29
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.09 E-value=2.4e-07 Score=95.77 Aligned_cols=234 Identities=13% Similarity=0.014 Sum_probs=118.3
Q ss_pred ccCCchHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccH
Q 011966 41 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 120 (474)
Q Consensus 41 ~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 120 (474)
.++.+.++.+...+++++|+|++.+|...++.|-. .+...++.++..........+....+|+. + . .|
T Consensus 4 ~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~----G-----G--~y 71 (435)
T PRK10435 4 AKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQ----G-----G--PI 71 (435)
T ss_pred CCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCC----C-----C--hh
Confidence 34557888899999999999999999999988753 44444444444333333333332222211 1 1 12
Q ss_pred HHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhh-hhHHHhhhcc--cCCCCCchHHHHH
Q 011966 121 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYI-FGACCATTVF--IPSFHNYRLWSFL 197 (474)
Q Consensus 121 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i-~~~i~~pl~~--~~~l~~l~~~s~~ 197 (474)
. -+++ +||.+.+..................+...+.+..+.+.........+ ..++++.+.+ .+..+....+..+
T Consensus 72 ~-y~~~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i 149 (435)
T PRK10435 72 A-YAGE-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPIPAGIACIAIVWVFTFVNMLGGTWVSRLTTI 149 (435)
T ss_pred H-HHHH-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 2 3345 68876554433211111111111111111111111111111111111 1111111111 2222333333332
Q ss_pred HHHHHHHHHHHhhhhhhhcCCCC----CCCcCCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCcc-chHHHHHHHH
Q 011966 198 GLGMTTYTAWYLTIAAFVHGQVD----GVTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKSIYLLATL 272 (474)
Q Consensus 198 ~~~~~~~~~~~i~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~-~~~~~~~s~~ 272 (474)
.....+...+...+....+.+++ +.....+.+..++..++....|+|.|-......-+|+|||+| .+|....+..
T Consensus 150 ~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~ 229 (435)
T PRK10435 150 GLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTG 229 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHH
Confidence 22221211111111111111111 111122345678888889999999999999999999999975 6999999999
Q ss_pred HHHHHHHhhHhHHHHh
Q 011966 273 YVFTLTIPSAAAVYWA 288 (474)
Q Consensus 273 ~~~~~y~~~gi~Gy~~ 288 (474)
++.++|+...+.....
T Consensus 230 iv~ilYil~~~~~~~~ 245 (435)
T PRK10435 230 LAGIIYIAATQVISGM 245 (435)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999998776654433
No 30
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.09 E-value=4.4e-07 Score=95.07 Aligned_cols=229 Identities=11% Similarity=0.026 Sum_probs=120.0
Q ss_pred CCchHHHHHHHHHhhhhhhhchhH-HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHH
Q 011966 43 GGSVYDAWFSCASNQVAQVLLTLP-YSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 121 (474)
Q Consensus 43 ~~s~~~a~~~l~~~~iG~GiLsLP-~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 121 (474)
+.+.++.....+..++|+|++..| .+.+.+|-...++..++.+++......-+.+....+++. . -.|.
T Consensus 3 ~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~----------g-G~~~ 71 (478)
T TIGR00913 3 SLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVV----------S-GSFA 71 (478)
T ss_pred CCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----------C-CCHH
Confidence 457788888899999999998876 777788854234455555555555544444443333210 0 0366
Q ss_pred HHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcccCCCCCchHHHHHHHH-
Q 011966 122 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFLGLG- 200 (474)
Q Consensus 122 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~- 200 (474)
...++.+||...++.-....+.............+..+....+..+...|..+..++.. +.-.+..+...++..+...
T Consensus 72 ~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~in~~gv~~~~~~~~~~~~~ 150 (478)
T TIGR00913 72 TYASRFVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVNPAVWIAIFYVFIV-IINLFGVKGYGEAEFWFSSI 150 (478)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHH
Confidence 67778899987766544333222111112222222222222222333334332222111 1112223333333322211
Q ss_pred ---HHHHHHHHhhhhhhhcC-CCC--C---C---CcCCCc----hHHHHHHHHHHHHHHhcCceehhhhhhhccCCcc-c
Q 011966 201 ---MTTYTAWYLTIAAFVHG-QVD--G---V---THSGPS----TLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-F 263 (474)
Q Consensus 201 ---~~~~~~~~i~~~~~~~g-~~~--~---~---~~~~~~----~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~-~ 263 (474)
..+.+.+..+....... ..+ + . +...+. .+.++..++....|+|.|-......-+|+|||+| .
T Consensus 151 ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~i 230 (478)
T TIGR00913 151 KILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSI 230 (478)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHH
Confidence 11111011111100011 000 0 0 000111 2566777888899999999999999999999987 5
Q ss_pred hHHHHHHHHHHHHHHHhhHh
Q 011966 264 KSIYLLATLYVFTLTIPSAA 283 (474)
Q Consensus 264 ~~~~~~s~~~~~~~y~~~gi 283 (474)
++....+..++.++|+...+
T Consensus 231 Prai~~~~~~~~~~Y~l~~~ 250 (478)
T TIGR00913 231 PRAAKRTFWRILVFYILTLF 250 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88898999888888987644
No 31
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.07 E-value=5.6e-07 Score=94.11 Aligned_cols=235 Identities=11% Similarity=0.023 Sum_probs=119.3
Q ss_pred ccCCchHHHHHHHHHhhhhhhhchhHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 011966 41 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLG-MLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQ 119 (474)
Q Consensus 41 ~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G-~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 119 (474)
+++-+.++++...+++++|+|++.+|....+.| -...++..++.++..........+....+++. ++ .
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~---sG--------G 74 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPEL---DG--------G 74 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC---CC--------C
Confidence 345688999999999999999999998877655 22223444555555444444344433333210 01 1
Q ss_pred HHHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhccccccccccc--Ccch-hhhhhhHHHhhh--cccCCCCCchHH
Q 011966 120 WFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNL--DKRT-WTYIFGACCATT--VFIPSFHNYRLW 194 (474)
Q Consensus 120 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~--~~~~-~~~i~~~i~~pl--~~~~~l~~l~~~ 194 (474)
..+-.++.+||...+................+.....+.+..+.+.. +... ..++..++.+.+ .-.+..+...++
T Consensus 75 ~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i 154 (473)
T TIGR00905 75 IYAYAREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFI 154 (473)
T ss_pred hhhhHHhHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 23344677999877655443322111111111111111111111111 1111 111111111111 223334444444
Q ss_pred HHHHHHHHHHHHHHhhhhhh--hcCC-C-CCC-Cc--CC-CchHHHHHHHHHHHHHHhcCceehhhhhhhccCCccchHH
Q 011966 195 SFLGLGMTTYTAWYLTIAAF--VHGQ-V-DGV-TH--SG-PSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSI 266 (474)
Q Consensus 195 s~~~~~~~~~~~~~i~~~~~--~~g~-~-~~~-~~--~~-~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~~~~~ 266 (474)
..+.....+...+.+++..+ .++. . .+. .. +. ...+..+..++....|+|.|-......-+|+||+++.++.
T Consensus 155 ~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPra 234 (473)
T TIGR00905 155 NTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGKA 234 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchHH
Confidence 43333222211111111111 1111 0 011 01 01 1245567778888999999999999999999995556999
Q ss_pred HHHHHHHHHHHHHhhHhHHH
Q 011966 267 YLLATLYVFTLTIPSAAAVY 286 (474)
Q Consensus 267 ~~~s~~~~~~~y~~~gi~Gy 286 (474)
...+..++.++|+.......
T Consensus 235 i~~~~~i~~~~Yil~~~~~~ 254 (473)
T TIGR00905 235 TVLGTLGALVIYILITLLSL 254 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987765543
No 32
>PRK10836 lysine transporter; Provisional
Probab=99.06 E-value=1.8e-06 Score=90.72 Aligned_cols=232 Identities=9% Similarity=-0.005 Sum_probs=115.4
Q ss_pred cCCchHHHHHHHHHhhhhhhhchhH-HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccH
Q 011966 42 HGGSVYDAWFSCASNQVAQVLLTLP-YSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 120 (474)
Q Consensus 42 ~~~s~~~a~~~l~~~~iG~GiLsLP-~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 120 (474)
+..+.++.....+++++|+|++..| .+.+++|-...++..++.++++...+.-..+....+++. + ..
T Consensus 15 r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~s----G--------g~ 82 (489)
T PRK10836 15 RELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVS----G--------SF 82 (489)
T ss_pred ccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----C--------CH
Confidence 4457788889999999999999999 578888864456666777777666655555544333321 1 12
Q ss_pred HHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhccc-ccccccccCcchhhhhhhHHHhhh--cccCCCCCchHHHHH
Q 011966 121 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASN-IYYINDNLDKRTWTYIFGACCATT--VFIPSFHNYRLWSFL 197 (474)
Q Consensus 121 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~-~~~~~~~~~~~~~~~i~~~i~~pl--~~~~~l~~l~~~s~~ 197 (474)
..-.++.+|+....+.-...... +..+.......++. +....+..+...+..+..+++..+ .-.|...+...+..+
T Consensus 83 y~y~~~~~g~~~gf~~Gw~~~~~-~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~~gv~~~~~~~~~~~~ 161 (489)
T PRK10836 83 ATYGQNYVEEGFGFALGWNYWYN-WAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSL 161 (489)
T ss_pred HHHHHHHcChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence 23334556666554433222211 11111111111111 111112222212222211111111 112222233222111
Q ss_pred HHH-HHHHHHH--HhhhhhhhcCCC----CCCCc---CCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCccc-hHH
Q 011966 198 GLG-MTTYTAW--YLTIAAFVHGQV----DGVTH---SGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKF-KSI 266 (474)
Q Consensus 198 ~~~-~~~~~~~--~i~~~~~~~g~~----~~~~~---~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~~-~~~ 266 (474)
.-. ..+.+.+ ++...+..++.. .+.+. +.+..+..++.+.....|+|.|-..+...-.|+|||+|- ++.
T Consensus 162 ~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrA 241 (489)
T PRK10836 162 IKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRA 241 (489)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHH
Confidence 111 1111110 111111111111 11110 112234555555666679999999999999999999874 888
Q ss_pred HHHHHHHHHHHHHhhHhHHH
Q 011966 267 YLLATLYVFTLTIPSAAAVY 286 (474)
Q Consensus 267 ~~~s~~~~~~~y~~~gi~Gy 286 (474)
...++..+.++|+.....-.
T Consensus 242 i~~~~~~v~~~Yvl~~~~~~ 261 (489)
T PRK10836 242 VRQVFWRILLFYVFAILIIS 261 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88888888889987654433
No 33
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.03 E-value=2.6e-09 Score=94.26 Aligned_cols=210 Identities=17% Similarity=0.129 Sum_probs=121.8
Q ss_pred HHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhhhhhc----c-----
Q 011966 49 AWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLY---------VEYRSRKEKE----N----- 110 (474)
Q Consensus 49 a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~---------~~~~~~~~~~----~----- 110 (474)
...-+.|-++|+|.|+||.||+.+||++++.++.+.+++++.+...+.++. .+..+.+|.+ .
T Consensus 17 gllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd~ 96 (319)
T KOG3832|consen 17 GLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASDD 96 (319)
T ss_pred hHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCCC
Confidence 446678889999999999999999999999999999999998875433321 1111111110 0
Q ss_pred -----c----------------------ccccccccHHHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccc--
Q 011966 111 -----V----------------------SFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYY-- 161 (474)
Q Consensus 111 -----~----------------------~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~-- 161 (474)
. ...+++ ..+|++...|.|.+.-+...++++|+||...+|--.+.....+
T Consensus 97 dvli~d~yeraekrpilsvqrrgspnpfeisdkv-emgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~it 175 (319)
T KOG3832|consen 97 DVLIADGYERAEKRPILSVQRRGSPNPFEISDKV-EMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNIT 175 (319)
T ss_pred cEEEecCchhcccCCcceecccCCCCcceeehhh-hHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhhh
Confidence 0 111222 4566677778888888899999999999998885322111000
Q ss_pred ---c------------ccc----c--------Ccchhhhhhh-HHHhhhcc--cCCCCCchHHHHHHHHHHHHHHHHhhh
Q 011966 162 ---I------------NDN----L--------DKRTWTYIFG-ACCATTVF--IPSFHNYRLWSFLGLGMTTYTAWYLTI 211 (474)
Q Consensus 162 ---~------------~~~----~--------~~~~~~~i~~-~i~~pl~~--~~~l~~l~~~s~~~~~~~~~~~~~i~~ 211 (474)
. ..+ | ..|++.+++. ++.+|+.+ +.+-++++.+..+.-..-+.. .+.
T Consensus 176 caa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~diqktk~iqiltslmrw~~~~~---g~~ 252 (319)
T KOG3832|consen 176 CAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFADIQKTKHIQILTSLMRWAAFIL---GIS 252 (319)
T ss_pred hhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEeccccchhHHHHHHHHHHHhccc---hhh
Confidence 0 001 1 1134445554 34556655 334455555544433332211 111
Q ss_pred hhhhcCCCCC-CCcCCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCcc
Q 011966 212 AAFVHGQVDG-VTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK 262 (474)
Q Consensus 212 ~~~~~g~~~~-~~~~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~ 262 (474)
.+-.+...++ ..+++...+-++-.-++..+|+|.+|...|.....++.+..
T Consensus 253 l~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~g 304 (319)
T KOG3832|consen 253 LATMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKDG 304 (319)
T ss_pred hhhhhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeeccc
Confidence 1111111111 12333233333334457789999999999999998876654
No 34
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.03 E-value=1.6e-07 Score=99.92 Aligned_cols=233 Identities=11% Similarity=0.087 Sum_probs=120.6
Q ss_pred cccCCchHHHHHHHHHhhhhhhhchhHHHH--HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 011966 40 LWHGGSVYDAWFSCASNQVAQVLLTLPYSF--SQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHV 117 (474)
Q Consensus 40 ~~~~~s~~~a~~~l~~~~iG~GiLsLP~af--~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~ 117 (474)
..+.-+.++.+..-+..++|+|+..+|-.. +.+|-. .++..++.++.+...+....+....++ ..+..|
T Consensus 26 L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P----~sGg~Y---- 96 (557)
T TIGR00906 26 MKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVP----KAGSAY---- 96 (557)
T ss_pred hhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCC----CCCcce----
Confidence 345568899999999999999999999543 457743 344444555554444433333322222 111111
Q ss_pred ccHHHHHHhhcCccchhhhHhhHHHH-HHHHHH------HHHHh-hccccc-------ccc-cccCcch-hhhhhhHHHh
Q 011966 118 IQWFEVLDGLLGPYWKAVGLAFNCTF-LLFGSV------IQLIA-CASNIY-------YIN-DNLDKRT-WTYIFGACCA 180 (474)
Q Consensus 118 ~~y~~l~~~~~G~~~~~~~~~~~~~~-~~g~~~------~yli~-~~~~~~-------~~~-~~~~~~~-~~~i~~~i~~ 180 (474)
.|. ++.+|+...+++-....+. ..+... .|+.. ....+. ... +...... +..+..++++
T Consensus 97 -~y~---~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~ 172 (557)
T TIGR00906 97 -LYS---YVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLL 172 (557)
T ss_pred -eeH---HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHH
Confidence 233 2447887666554333322 111111 12110 000000 000 0111111 1111111111
Q ss_pred hhcccCCCCCchHHHHHHHHHHHHHHHHhhhhhhhcCCCCCCC--------cCCCchHHHHHHHHHHHHHHhcCceehhh
Q 011966 181 TTVFIPSFHNYRLWSFLGLGMTTYTAWYLTIAAFVHGQVDGVT--------HSGPSTLVLYFTGATNILYTFGGHAVTVE 252 (474)
Q Consensus 181 pl~~~~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~g~~~~~~--------~~~~~~~~~~~~~~~i~~faf~~h~~~~~ 252 (474)
-+...+..+..++++.+.....+...+++++.+..+++.++.. ...|..+.+++.+.....|+|.|-..+..
T Consensus 173 ~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~ 252 (557)
T TIGR00906 173 AVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIAT 252 (557)
T ss_pred HHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHH
Confidence 1223344555555544433332222112222333222222221 11133456788888999999999999999
Q ss_pred hhhhccCCcc-chHHHHHHHHHHHHHHHhhHhHH
Q 011966 253 IMHAMWKPQK-FKSIYLLATLYVFTLTIPSAAAV 285 (474)
Q Consensus 253 i~~~mk~p~~-~~~~~~~s~~~~~~~y~~~gi~G 285 (474)
.-+|+|||+| .++....++.+++++|+.+.+.-
T Consensus 253 ~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l 286 (557)
T TIGR00906 253 TGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAAL 286 (557)
T ss_pred hHHhccCccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 58999999999999998766543
No 35
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.03 E-value=8.2e-07 Score=92.14 Aligned_cols=332 Identities=11% Similarity=0.065 Sum_probs=154.3
Q ss_pred HHhhhhhhhchhHH-HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHHHhhcCccc
Q 011966 54 ASNQVAQVLLTLPY-SFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYW 132 (474)
Q Consensus 54 ~~~~iG~GiLsLP~-af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~ 132 (474)
+.+++|+|++-.|- +.+++|-. .++..++.+++....+....+....+++. . ...+-.++.+||..
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~~-~ll~~~i~gi~~~~~al~~aEL~s~~P~~---------G---g~y~y~~~~~G~~~ 70 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGPA-VLLAYLFAGLLVVMIMRMLAEMAVATPDT---------G---SFSTYADKAIGRWA 70 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCC---------C---CHHHHHHHHcChHH
Confidence 56899999999985 88899963 66666666776666555555543333211 1 23455567799987
Q ss_pred hhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcccCCCCCchHHHHHHHHHHHH-H-HHHhh
Q 011966 133 KAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFLGLGMTTY-T-AWYLT 210 (474)
Q Consensus 133 ~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~-~-~~~i~ 210 (474)
..+....................+..+....+..+...+.++...+...+- ....+....+..+....-+. . .++++
T Consensus 71 gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN-~~gv~~~~~i~~~~~~~ki~~li~~ii~ 149 (446)
T PRK10197 71 GYTIGWLYWWFWVLVIPLEANIAAMILHSWVPGIPIWLFSLVITLALTGSN-LLSVKNYGEFEFWLALCKVIAILAFIFL 149 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH-HHhhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 665543333221111111111111111111122221122222111111111 11222222222211111111 1 11111
Q ss_pred hhhhhcCCC-----CCC----Cc--CCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCcc-chHHHHHHHHHHHHHH
Q 011966 211 IAAFVHGQV-----DGV----TH--SGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKSIYLLATLYVFTLT 278 (474)
Q Consensus 211 ~~~~~~g~~-----~~~----~~--~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~-~~~~~~~s~~~~~~~y 278 (474)
......|.. .+. +. ..|..+.++..++....|+|.|-......-.|+|||+| .++....++..+.++|
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Y 229 (446)
T PRK10197 150 GAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFY 229 (446)
T ss_pred HHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHH
Confidence 011011211 111 10 01345567888999999999999999999999999987 5788877888788888
Q ss_pred HhhHhHHHHhhccccccc---c---ccccCCCCchHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHc---------CCC
Q 011966 279 IPSAAAVYWAFGDQLLTH---S---NAFSLLPRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVG---------MHD 343 (474)
Q Consensus 279 ~~~gi~Gy~~fG~~~~~~---~---~il~~l~~~~~~~i~~i~~~i~l~~s~pl~~~p~~~~~~~~~~---------~~~ 343 (474)
+...+.-......+..+. + ...+....+....+..+...+..+.+.--.+....+.+...-+ +.+
T Consensus 230 il~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~ 309 (446)
T PRK10197 230 LCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKIN 309 (446)
T ss_pred HHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC
Confidence 765444222222111000 0 1122222222234444544455444444333333332222211 111
Q ss_pred Cccchhhhh-hhHhHHHHHHHHHHhcC--CchhHHHhhhhHHHhhHHHhhhHHHHHHHhcc
Q 011966 344 TKSICLRAL-ARLPVVIPIWFLAIIFP--FFGPINSAVGALLVSFTVYIIPALAHMLTYRS 401 (474)
Q Consensus 344 ~~~~~~~~~-~r~~~v~~~~~iA~~ip--~~~~i~~lvGa~~~~~l~filP~l~~l~~~~~ 401 (474)
++....+-+ +.....++..+.....| .++.++++.+... .+.|+++.+-+++++|+
T Consensus 310 ~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~~ 368 (446)
T PRK10197 310 RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRKI 368 (446)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 111111111 11112222222222223 3666776655544 48889999999998765
No 36
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.02 E-value=2.3e-07 Score=103.47 Aligned_cols=226 Identities=13% Similarity=0.079 Sum_probs=118.2
Q ss_pred CchHHHHHHH-HHhhhhhhh-chhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHH
Q 011966 44 GSVYDAWFSC-ASNQVAQVL-LTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 121 (474)
Q Consensus 44 ~s~~~a~~~l-~~~~iG~Gi-LsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 121 (474)
-+.+++++.- +.+++|+|+ +.+++...++|...+++.+++.++++..++.-+... ..+..+ +..-.|.
T Consensus 78 lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~sei----aTng~p------~aGG~Y~ 147 (953)
T TIGR00930 78 FGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAI----ATNGVV------KGGGAYY 147 (953)
T ss_pred cceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCC------CccHHHH
Confidence 3556555555 889999998 556688989998777888888888888886544433 221011 1000344
Q ss_pred HHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhccccccccc---------cc-CcchhhhhhhHHHhhhcccCCCCCc
Q 011966 122 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIND---------NL-DKRTWTYIFGACCATTVFIPSFHNY 191 (474)
Q Consensus 122 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~---------~~-~~~~~~~i~~~i~~pl~~~~~l~~l 191 (474)
-+ ++.+|+.....+-.....-....+..|.+..++.+..+.+ .. +.+.+..+..+++..+. +...
T Consensus 148 yi-sralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In----~~Gv 222 (953)
T TIGR00930 148 LI-SRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGIS----FAGM 222 (953)
T ss_pred HH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHH----HhhH
Confidence 44 4558887654443332222222233443333322211110 11 11222222222222222 2234
Q ss_pred hHHHHHHHHHHHH--HHHHhhhh-hhhcC-CCC--C--------CC--c-CC-CchHHHHHHHHHHHHHHhcCceehhhh
Q 011966 192 RLWSFLGLGMTTY--TAWYLTIA-AFVHG-QVD--G--------VT--H-SG-PSTLVLYFTGATNILYTFGGHAVTVEI 253 (474)
Q Consensus 192 ~~~s~~~~~~~~~--~~~~i~~~-~~~~g-~~~--~--------~~--~-~~-~~~~~~~~~~~~i~~faf~~h~~~~~i 253 (474)
++.+-+..+.++. ++++.++. ++... ..+ + .. . +. +....+++..++++.+||.|......+
T Consensus 223 k~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~ 302 (953)
T TIGR00930 223 EWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANI 302 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333332221 11111111 11110 000 0 00 0 00 111223667778888899998888999
Q ss_pred hhhccCCcc-chHHHHHHHHHHHHHHHhhHhH
Q 011966 254 MHAMWKPQK-FKSIYLLATLYVFTLTIPSAAA 284 (474)
Q Consensus 254 ~~~mk~p~~-~~~~~~~s~~~~~~~y~~~gi~ 284 (474)
-.|+|+|+| .++....++.+++++|+++.+.
T Consensus 303 sgElKnP~r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 303 SGDLKDPQKAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHhccChhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 5889999999999999887653
No 37
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.00 E-value=1.6e-06 Score=90.66 Aligned_cols=237 Identities=9% Similarity=-0.014 Sum_probs=116.9
Q ss_pred CCchHHHHHHHHHhhhhhhhchhHHHHH-hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHH
Q 011966 43 GGSVYDAWFSCASNQVAQVLLTLPYSFS-QLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 121 (474)
Q Consensus 43 ~~s~~~a~~~l~~~~iG~GiLsLP~af~-~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 121 (474)
+-+.++.+...+++++|+|++.+|.... .+|....++..++.++..........+....+++. ... ..
T Consensus 2 ~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~--------gGG---~y 70 (468)
T TIGR03810 2 KLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPEL--------DGG---VY 70 (468)
T ss_pred CCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--------CCC---hh
Confidence 4467888999999999999999997654 55533233445555555544444344432222211 001 22
Q ss_pred HHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhccccccccccc--Ccchhhhh-hhHHHhhhc--ccCCCCCchHHHH
Q 011966 122 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNL--DKRTWTYI-FGACCATTV--FIPSFHNYRLWSF 196 (474)
Q Consensus 122 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~--~~~~~~~i-~~~i~~pl~--~~~~l~~l~~~s~ 196 (474)
+-.++.+||....+.-.............+.....+.+....+.. +...+..+ ..++++.+. -.+..+..+++..
T Consensus 71 ~y~~~~fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~ 150 (468)
T TIGR03810 71 SYAKAGFGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINT 150 (468)
T ss_pred hhHHhHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 335677999876654433222111111122111111111111111 11222111 111211121 1233333333333
Q ss_pred HHHHHHHH-HHHHhhh-hhhhcC-CCC-C-CCc-----CCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCccchHH
Q 011966 197 LGLGMTTY-TAWYLTI-AAFVHG-QVD-G-VTH-----SGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSI 266 (474)
Q Consensus 197 ~~~~~~~~-~~~~i~~-~~~~~g-~~~-~-~~~-----~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~~~~~ 266 (474)
+.....+. ..++++. ....++ ... + .+. .....+.++..++....|+|.|-.....+-+|.||+++.++.
T Consensus 151 i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~a 230 (468)
T TIGR03810 151 ITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKA 230 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchHH
Confidence 32222111 1111110 111111 100 0 000 011224456677888999999998888888999998778999
Q ss_pred HHHHHHHHHHHHHhhHhHHHHhhc
Q 011966 267 YLLATLYVFTLTIPSAAAVYWAFG 290 (474)
Q Consensus 267 ~~~s~~~~~~~y~~~gi~Gy~~fG 290 (474)
...+...+.++|+.+.+..+...+
T Consensus 231 i~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 231 TVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999887766554433
No 38
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.00 E-value=1.4e-07 Score=93.41 Aligned_cols=277 Identities=16% Similarity=0.181 Sum_probs=159.9
Q ss_pred CchHHHHHHHHHhhhhhhhchhHHHHHhc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccH
Q 011966 44 GSVYDAWFSCASNQVAQVLLTLPYSFSQL---GMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 120 (474)
Q Consensus 44 ~s~~~a~~~l~~~~iG~GiLsLP~af~~~---G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 120 (474)
-|..|...-+..+++|+|++.+|....+. ||+. .++- ++......++..+..+++++. +.
T Consensus 2 IS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~-~ll~---~~~~l~~~~l~~~l~~~~p~~-------------~l 64 (320)
T PF03845_consen 2 ISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWIS-VLLG---GLIGLLLALLIYYLLKRFPGK-------------TL 64 (320)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH-HHHH---HHHHHHHHHHHHHHHHHCCCC-------------CH
Confidence 36789999999999999999999887665 4653 3333 333333344444443333321 57
Q ss_pred HHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccc-cccccCcchhhhhhh-HHHhhhcccCCCCCchHHHHHH
Q 011966 121 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYY-INDNLDKRTWTYIFG-ACCATTVFIPSFHNYRLWSFLG 198 (474)
Q Consensus 121 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~-~~~~~~~~~~~~i~~-~i~~pl~~~~~l~~l~~~s~~~ 198 (474)
.|..++.+||+...+.......+.+..+...+-..++.+.. +.++. ..|.+... .+..--...+.++.+.+.+.+-
T Consensus 65 ~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~T--P~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~ 142 (320)
T PF03845_consen 65 VEISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKTYLLPET--PIWVIILLFLLVAAYAARKGIEVIARVAEIL 142 (320)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC--CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 89999999999888777766666655554444333333221 22222 23333221 2222223344566666544443
Q ss_pred HHHHHHHHHHhhhhhhhcCCCCCCCcCCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCccchHHHHHHHHHHHHHH
Q 011966 199 LGMTTYTAWYLTIAAFVHGQVDGVTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLT 278 (474)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~~~~~~~~s~~~~~~~y 278 (474)
....+...+.+......+.+.++...-.+.++.+++.+.-...+.|.+-..+.-+...+|+|++.+|....+..++.++|
T Consensus 143 ~~~~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~ 222 (320)
T PF03845_consen 143 FPIFLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFL 222 (320)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 33333222222222222222222221223456677777777788888888888899999999999888889998888888
Q ss_pred HhhHhHHHHhhccccccccccccCCCC---------chH----HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHcCCC
Q 011966 279 IPSAAAVYWAFGDQLLTHSNAFSLLPR---------SRW----RDVAVILMLIHQFITFGFACTPLYFVWEKVVGMHD 343 (474)
Q Consensus 279 ~~~gi~Gy~~fG~~~~~~~~il~~l~~---------~~~----~~i~~i~~~i~l~~s~pl~~~p~~~~~~~~~~~~~ 343 (474)
...-+.....||.+.. ++ ..+|- +++ ..+.-..-.+..+.+..+..+-..+.+.+.++.++
T Consensus 223 ~~~~~~~i~vfG~~~~--~~--~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~~ 296 (320)
T PF03845_consen 223 LFIIFITIGVFGPELA--KK--LTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLKD 296 (320)
T ss_pred HHHHHHHHHhcCHHHH--hc--eecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 8777777778886541 11 11221 111 11222333444555555667777778888876433
No 39
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.97 E-value=2.1e-06 Score=89.04 Aligned_cols=227 Identities=10% Similarity=-0.001 Sum_probs=112.3
Q ss_pred ccCCchHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccH
Q 011966 41 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 120 (474)
Q Consensus 41 ~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 120 (474)
+++-+.++.+.-.+..++|....+.+.++++.|+..-++..++.+++....+....+....+++ .. ..
T Consensus 6 ~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~-----------~G-g~ 73 (442)
T TIGR00908 6 KKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPT-----------AG-GG 73 (442)
T ss_pred hccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------CC-CH
Confidence 3445777777777788888555667889999998633334444444433333333433323321 11 12
Q ss_pred HHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcccCCCCCchHHHHHHHH
Q 011966 121 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFLGLG 200 (474)
Q Consensus 121 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 200 (474)
..-.++.+||...++.-.............+....++.+....+..+...+.++...+...+ -.+..+...++..+...
T Consensus 74 y~~~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~~~~~~~~~~~~~~~l-n~~g~~~~~~i~~~~~~ 152 (442)
T TIGR00908 74 YGFARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGPGWLAALVFYIVFIGI-NILGVGEAAKLEFVVTA 152 (442)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHH
Confidence 33456679998766554433332222222222233332222222222222222111111111 11222333333222111
Q ss_pred HHHHHHHHhhhhhhhcC-CCCC--------CCcCCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCcc-chHHHHHH
Q 011966 201 MTTYTAWYLTIAAFVHG-QVDG--------VTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKSIYLLA 270 (474)
Q Consensus 201 ~~~~~~~~i~~~~~~~g-~~~~--------~~~~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~-~~~~~~~s 270 (474)
..+. .+.++......+ +..+ .+...+..+.+++.++....|+|.|.......-+|+|||+| .++....+
T Consensus 153 ~~~~-~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s 231 (442)
T TIGR00908 153 VAII-ALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGA 231 (442)
T ss_pred HHHH-HHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHH
Confidence 1111 111111111111 0000 01111234456778888889999999999999999999977 58888888
Q ss_pred HHHHHHHHHhh
Q 011966 271 TLYVFTLTIPS 281 (474)
Q Consensus 271 ~~~~~~~y~~~ 281 (474)
..++.++|+..
T Consensus 232 ~~~~~~~~~~~ 242 (442)
T TIGR00908 232 ILTLLALAAGI 242 (442)
T ss_pred HHHHHHHHHHH
Confidence 88777777655
No 40
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.91 E-value=4.7e-07 Score=90.41 Aligned_cols=341 Identities=12% Similarity=0.131 Sum_probs=178.9
Q ss_pred cCCchHHHHHHHHHhhhhhhh-chhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccH
Q 011966 42 HGGSVYDAWFSCASNQVAQVL-LTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 120 (474)
Q Consensus 42 ~~~s~~~a~~~l~~~~iG~Gi-LsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 120 (474)
++.++.+--+.-+...||+|. |+--.+.+.+|-- =++.-+++|++...-+..+.+...+. + +. -++
T Consensus 13 rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~~-----p---~~----gSF 79 (462)
T COG1113 13 RGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVAN-----P---VS----GSF 79 (462)
T ss_pred hhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHhC-----C---CC----CcH
Confidence 334445545667889999996 5667888888843 23344556666555556666553221 1 10 168
Q ss_pred HHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHh--hhcccCCCCCchHH-HHH
Q 011966 121 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCA--TTVFIPSFHNYRLW-SFL 197 (474)
Q Consensus 121 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~--pl~~~~~l~~l~~~-s~~ 197 (474)
.+.+++.+|++...+..-........++...+...+..+++..++.+.+.+.++..+++. -+.-.|.+.++.++ +.+
T Consensus 80 ~~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlI 159 (462)
T COG1113 80 SDYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVPQWVFALAAVVLLLAVNLISVKVFGELEFWFALI 159 (462)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999877766655555556666666555544555555544444444333222 24456666666554 333
Q ss_pred HHHHHHH---HHHHhhhhhhhcC-CCCCC----CcC--CCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCccc-hHH
Q 011966 198 GLGMTTY---TAWYLTIAAFVHG-QVDGV----THS--GPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKF-KSI 266 (474)
Q Consensus 198 ~~~~~~~---~~~~i~~~~~~~g-~~~~~----~~~--~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~~-~~~ 266 (474)
=+..++. ..++++......+ ...++ ++. -|+.+.+++.++-+.+|||++...+=---.|-|||+|- +|.
T Consensus 160 KV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkA 239 (462)
T COG1113 160 KVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKA 239 (462)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHH
Confidence 2222221 1111111111111 11121 222 27888999999999999999999999999999999985 555
Q ss_pred HHHHHHHHHHHH-----HhhHhHHHHhhccccccccccccCCC---CchHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 011966 267 YLLATLYVFTLT-----IPSAAAVYWAFGDQLLTHSNAFSLLP---RSRWRDVAVILMLIHQFITFGFACTPLYFVWEKV 338 (474)
Q Consensus 267 ~~~s~~~~~~~y-----~~~gi~Gy~~fG~~~~~~~~il~~l~---~~~~~~i~~i~~~i~l~~s~pl~~~p~~~~~~~~ 338 (474)
.+--..=..++| +++.+.-+-.++++ .++....+. -+....+.+..+..+..++.==-++...+++...
T Consensus 240 in~V~~RI~iFYvgsl~vi~~l~PW~~~~~~---~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~l 316 (462)
T COG1113 240 INSVIWRILIFYVGSLFVILSLYPWNQIGED---GSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSL 316 (462)
T ss_pred HhhhhHHHHHHHHHHHHHHheeccccccCCC---CCcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHH
Confidence 543333233334 33444433333333 222222221 1111122333222222222211123333333332
Q ss_pred HcCC---------CCccc-hhhhhhhHhHHHHHHHHHHhcCC--chhHHHhhhhHHHhhHHHhhhHHHHHHHhc
Q 011966 339 VGMH---------DTKSI-CLRALARLPVVIPIWFLAIIFPF--FGPINSAVGALLVSFTVYIIPALAHMLTYR 400 (474)
Q Consensus 339 ~~~~---------~~~~~-~~~~~~r~~~v~~~~~iA~~ip~--~~~i~~lvGa~~~~~l~filP~l~~l~~~~ 400 (474)
-... +++.. +.-+.+.....++..++....|. |..+.+..+... .....+=.+.|+|++|
T Consensus 317 a~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~--l~vW~~I~~s~l~~rk 388 (462)
T COG1113 317 AKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGL--LFVWLMILLSQLKLRK 388 (462)
T ss_pred hhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 2111 11111 22344566666777888888893 444444433332 3334444677888777
No 41
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.90 E-value=1e-06 Score=90.78 Aligned_cols=233 Identities=13% Similarity=0.146 Sum_probs=123.2
Q ss_pred chHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhcccccccccccHHHH
Q 011966 45 SVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMG-SWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 123 (474)
Q Consensus 45 s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s-~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 123 (474)
+.++++...++.++|+|+...| .....|.. .++..++.+.+. ....+.. .|..++..+++ ....-
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~----~el~~~~p~~G--------G~y~~ 67 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSY----AELSSAYPSAG--------GIYVW 67 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHH----HHHHTTTTSST--------THHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHH----HHHhccCCCcC--------eeeeh
Confidence 5678889999999999999999 77777765 444444433333 2222222 23322211111 23455
Q ss_pred HHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccc-cccccCcchh-hhhhhH-HHh--hhcccCCCCCchHHHHHH
Q 011966 124 LDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYY-INDNLDKRTW-TYIFGA-CCA--TTVFIPSFHNYRLWSFLG 198 (474)
Q Consensus 124 ~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~-~~~~~~~~~~-~~i~~~-i~~--pl~~~~~l~~l~~~s~~~ 198 (474)
.++.+||+...+...............+.....+.+.. ++++.....| ..+.+. ++. -..-.+..+..+++....
T Consensus 68 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~ 147 (426)
T PF13520_consen 68 VSRAFGPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNIL 147 (426)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hhhcccccchhcccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhh
Confidence 56778998877665544443333332333223332222 2222222111 111111 111 112233334444443333
Q ss_pred HHHHH-HHHHHhhhhhhhcCCCCC-------CCcCCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCccchHHHHHH
Q 011966 199 LGMTT-YTAWYLTIAAFVHGQVDG-------VTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKSIYLLA 270 (474)
Q Consensus 199 ~~~~~-~~~~~i~~~~~~~g~~~~-------~~~~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~~~~~~~~s 270 (474)
....+ ...+++++..+...+.++ .+...+..+..++.+++..+|+|.|-...+...+|+|| ++.++....+
T Consensus 148 ~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~ 226 (426)
T PF13520_consen 148 TVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIIIS 226 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHH
T ss_pred hhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhheeecccc
Confidence 32222 121122222232211111 11122334445778889999999999999999999998 7789999999
Q ss_pred HHHHHHHHHhhHhHHHHhhccc
Q 011966 271 TLYVFTLTIPSAAAVYWAFGDQ 292 (474)
Q Consensus 271 ~~~~~~~y~~~gi~Gy~~fG~~ 292 (474)
..++.++|....+.-....+++
T Consensus 227 ~~~~~i~y~l~~~~~~~~~~~~ 248 (426)
T PF13520_consen 227 IIIVAIIYILFSIALLGALPDD 248 (426)
T ss_dssp HHHHHHHHHHHHHHHHTTSTHC
T ss_pred hhHHHHHHhhhhheeeecccch
Confidence 9999999988776666655554
No 42
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=98.85 E-value=2.2e-06 Score=90.42 Aligned_cols=236 Identities=11% Similarity=0.119 Sum_probs=117.8
Q ss_pred ccccCCchHHHHHHHHHhhhhhhhchhHHH-HHhcchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 011966 39 LLWHGGSVYDAWFSCASNQVAQVLLTLPYS-FSQLGMLSGI--ILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKN 115 (474)
Q Consensus 39 ~~~~~~s~~~a~~~l~~~~iG~GiLsLP~a-f~~~G~~~g~--i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~ 115 (474)
...++-+.++++.-.+++++|+|++..|.. .+++|-. |. +..++.+++.........+....+++. +
T Consensus 39 ~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~-g~~~~~~ii~~i~~~~~al~~aELas~~P~s----G----- 108 (501)
T TIGR00911 39 ALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSV-GLALIMWAVCGIFSIVGALVYAELGTTIPKS----G----- 108 (501)
T ss_pred ccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----C-----
Confidence 345556888888888999999999999854 5666743 33 333444554444444444433232211 1
Q ss_pred ccccHHHHHHhhcCccchhhhHhhHHHHH-HHHHHHHHHhhcccccc-cccccCcchh--hhhhhHHHhhhc--ccCCCC
Q 011966 116 HVIQWFEVLDGLLGPYWKAVGLAFNCTFL-LFGSVIQLIACASNIYY-INDNLDKRTW--TYIFGACCATTV--FIPSFH 189 (474)
Q Consensus 116 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~-~g~~~~yli~~~~~~~~-~~~~~~~~~~--~~i~~~i~~pl~--~~~~l~ 189 (474)
. .| .-.++.+||...++......... .+.........++.+.. ..++.....| .++...++..+. -.+..+
T Consensus 109 G--~y-~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk 185 (501)
T TIGR00911 109 G--EY-NYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSVK 185 (501)
T ss_pred c--hh-hhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 1 12 23345688887665433222111 11111111112221111 1111111112 121111122111 122233
Q ss_pred CchHHHHHHHHHHHHHHHHhhhhhh---hcCCCCCCC----cCC-CchHHHHHHHHHHHHHHhcCceehhhhhhhccCCc
Q 011966 190 NYRLWSFLGLGMTTYTAWYLTIAAF---VHGQVDGVT----HSG-PSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ 261 (474)
Q Consensus 190 ~l~~~s~~~~~~~~~~~~~i~~~~~---~~g~~~~~~----~~~-~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~ 261 (474)
...++..+.....+...+.+++.++ ..+..++.+ ... ..+..++..++....|+|.|-......-.|+|||+
T Consensus 186 ~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~ 265 (501)
T TIGR00911 186 WATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY 265 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch
Confidence 3333333322222211111111111 122111111 111 12355677788899999999999999999999997
Q ss_pred c-chHHHHHHHHHHHHHHHhhHhHHHH
Q 011966 262 K-FKSIYLLATLYVFTLTIPSAAAVYW 287 (474)
Q Consensus 262 ~-~~~~~~~s~~~~~~~y~~~gi~Gy~ 287 (474)
| .++....+..++.++|+.+.+.-..
T Consensus 266 r~iPrAi~~s~~~v~~~Y~l~~~a~~~ 292 (501)
T TIGR00911 266 RTLPIAIIISMPIVTFIYVLTNIAYFT 292 (501)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7 5899999999999999887554433
No 43
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.77 E-value=1.6e-06 Score=88.01 Aligned_cols=348 Identities=10% Similarity=0.052 Sum_probs=182.9
Q ss_pred cCCchHHHHHHHHHhhhhhhhchhHHHHHhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Q 011966 42 HGGSVYDAWFSCASNQVAQVLLTLPYSFSQLG--MLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQ 119 (474)
Q Consensus 42 ~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G--~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 119 (474)
++-+.+.++..++++++|+|+...|......+ .....+..+++++++...++. +.|... .+++..-+
T Consensus 12 kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galc----yaELGT-------~ipksGgd 80 (479)
T KOG1287|consen 12 KKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALC----YAELGT-------SIPKSGGD 80 (479)
T ss_pred ceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHH----HHHHhc-------cccCCCcc
Confidence 34456666677888999999999997776655 334445555566666665432 223321 12221113
Q ss_pred HHHHHHhhcCccchhhhHhhHHHHHHHHH-HHHHHhhccc-cccccc-ccCcchhhhhhhHHHhhhcccCCCCCchHHHH
Q 011966 120 WFEVLDGLLGPYWKAVGLAFNCTFLLFGS-VIQLIACASN-IYYIND-NLDKRTWTYIFGACCATTVFIPSFHNYRLWSF 196 (474)
Q Consensus 120 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~-~~yli~~~~~-~~~~~~-~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~ 196 (474)
|.-+.+ +|||.........-........ .++-+..++- +..+.+ ....+.+.-..+.+++-+.-..|..+.++.+.
T Consensus 81 ~ayi~~-afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~~V~~a~~ 159 (479)
T KOG1287|consen 81 YAYISE-AFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSFSVKWATR 159 (479)
T ss_pred hhhHHH-HhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 554443 4888765544333333333333 3444444443 222222 11223333333333333444556667776665
Q ss_pred HHHHHHH---HHHHHhhhhhhh---cCCCCCCCcC----CCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCcc-chH
Q 011966 197 LGLGMTT---YTAWYLTIAAFV---HGQVDGVTHS----GPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKS 265 (474)
Q Consensus 197 ~~~~~~~---~~~~~i~~~~~~---~g~~~~~~~~----~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~-~~~ 265 (474)
+=.+.+. ....++++.+++ .|..++.+.. ...+..++..++-.-.|||.|=..+=.+..|+|||+| .++
T Consensus 160 vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~ 239 (479)
T KOG1287|consen 160 VQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPR 239 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccchH
Confidence 5433332 111222233332 3333322211 1123344555666679999999999999999999988 599
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHhhcccccccccccc-CCCC---chHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHc-
Q 011966 266 IYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFS-LLPR---SRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVG- 340 (474)
Q Consensus 266 ~~~~s~~~~~~~y~~~gi~Gy~~fG~~~~~~~~il~-~l~~---~~~~~i~~i~~~i~l~~s~pl~~~p~~~~~~~~~~- 340 (474)
+..+++.++++.|+.+=+..+-+-..+...+++..- .+.+ +.+..+.-++..++.+.+.--.++...+.+...-+
T Consensus 240 Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~are 319 (479)
T KOG1287|consen 240 AILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLFYAGARE 319 (479)
T ss_pred HHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHc
Confidence 999999999999988766554332211100111100 0110 11223344444444444433333333222222211
Q ss_pred ---------CCCCccchhhhhhhHhHHHHHHHHHHhcCCchhHHHhhhhHHHhhHHHhhhHHHHHHHhcchhh
Q 011966 341 ---------MHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHMLTYRSASA 404 (474)
Q Consensus 341 ---------~~~~~~~~~~~~~r~~~v~~~~~iA~~ip~~~~i~~lvGa~~~~~l~filP~l~~l~~~~~~~~ 404 (474)
.+.+ +... ...+.+.....++...++|+..+++.++=.-.....+..=+++++|.++++..
T Consensus 320 G~LP~~~s~i~~~-~~TP--~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~ 389 (479)
T KOG1287|consen 320 GHLPAFFSMISVR-RFTP--RPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLP 389 (479)
T ss_pred cCccHHHHhhcCC-CCCC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 1111 1111 12333334445555667799999999988888888888888999888777643
No 44
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.66 E-value=0.00024 Score=74.43 Aligned_cols=59 Identities=12% Similarity=0.008 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCceehhhhhhhccCCccc-hHHHHHHHHHHHHHHHhhHhHHHHhhc
Q 011966 232 LYFTGATNILYTFGGHAVTVEIMHAMWKPQKF-KSIYLLATLYVFTLTIPSAAAVYWAFG 290 (474)
Q Consensus 232 ~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~~-~~~~~~s~~~~~~~y~~~gi~Gy~~fG 290 (474)
.+..+.....|+|.|-......-+|+|||+|- +|....++.+..++|...-+......+
T Consensus 214 ~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 214 AFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 34455566789999999999999999999885 888888888776655544443333333
No 45
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=98.60 E-value=6.4e-05 Score=78.05 Aligned_cols=232 Identities=10% Similarity=0.023 Sum_probs=114.1
Q ss_pred cccCCchHHHHHHHHHhhhhhhhchhHHH-HHhcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 011966 40 LWHGGSVYDAWFSCASNQVAQVLLTLPYS-FSQLGML-SGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHV 117 (474)
Q Consensus 40 ~~~~~s~~~a~~~l~~~~iG~GiLsLP~a-f~~~G~~-~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~ 117 (474)
.++.-+.++.+...+..++|+|++..|.. .+..|-. ..++..++.+++....+....+....+++. + ..
T Consensus 6 L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~----G-----G~ 76 (445)
T PRK11357 6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPEN----G-----AD 76 (445)
T ss_pred ccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----C-----Cc
Confidence 34456788888888999999999999976 4455632 233444455555444444444433333321 1 11
Q ss_pred ccHHHHHHhhcCccchhhhHhhHHH-HHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhc--ccCCCCCchHH
Q 011966 118 IQWFEVLDGLLGPYWKAVGLAFNCT-FLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTV--FIPSFHNYRLW 194 (474)
Q Consensus 118 ~~y~~l~~~~~G~~~~~~~~~~~~~-~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~--~~~~l~~l~~~ 194 (474)
..|. ++.+||....+....... ........+....++.+.... ..+...+..+...+...+. -.+..+...++
T Consensus 77 y~y~---~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v 152 (445)
T PRK11357 77 YVYL---KNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLT-PIDPLLGKFIAAGLIIAFMLLHLRSVEGGAAF 152 (445)
T ss_pred eeeH---HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 1233 355888765544332221 111111122222222211111 1111111111111111111 12333333333
Q ss_pred HHHHHHHHHHHHHHhhhhhh--hcCC-CC-CCCc--CCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCccc-hHHH
Q 011966 195 SFLGLGMTTYTAWYLTIAAF--VHGQ-VD-GVTH--SGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKF-KSIY 267 (474)
Q Consensus 195 s~~~~~~~~~~~~~i~~~~~--~~g~-~~-~~~~--~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~~-~~~~ 267 (474)
..+.....+...+++++.++ ..+. .. +.+. ....++.++..++....|+|.|-......-+|+|||+|- ++..
T Consensus 153 ~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai 232 (445)
T PRK11357 153 QTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRAL 232 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHH
Confidence 32222221111111111111 1221 11 1010 111124567778888999999999999999999999874 8999
Q ss_pred HHHHHHHHHHHHhhHhH
Q 011966 268 LLATLYVFTLTIPSAAA 284 (474)
Q Consensus 268 ~~s~~~~~~~y~~~gi~ 284 (474)
..++.++.++|+.....
T Consensus 233 ~~~~~i~~~~Y~l~~~~ 249 (445)
T PRK11357 233 IGSCLLVLVLYTLLALV 249 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999876553
No 46
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.57 E-value=0.00017 Score=75.16 Aligned_cols=63 Identities=14% Similarity=0.225 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHHhcCceehhhhhhhccCCcc-chHHHHHHHHHHHHHHHhhHhHHHHhhcc
Q 011966 229 TLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKSIYLLATLYVFTLTIPSAAAVYWAFGD 291 (474)
Q Consensus 229 ~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~-~~~~~~~s~~~~~~~y~~~gi~Gy~~fG~ 291 (474)
....+..++....++|.|-......-+|+|||+| .++....++..+.++|+...+.-....++
T Consensus 199 ~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 199 SFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred hHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 3446777888899999999999999999999966 58889899988888998887777766665
No 47
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.49 E-value=0.00048 Score=70.74 Aligned_cols=226 Identities=14% Similarity=0.067 Sum_probs=134.3
Q ss_pred cCCchHHHHHHHHHhhhhhhh-chhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccH
Q 011966 42 HGGSVYDAWFSCASNQVAQVL-LTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 120 (474)
Q Consensus 42 ~~~s~~~a~~~l~~~~iG~Gi-LsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 120 (474)
+.....+-.+.-+...+|+|. ++.-.+++++|-...++..++++.+.+..+.-++++...++.. - ++
T Consensus 44 R~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~s-----G-------sF 111 (541)
T COG0833 44 RSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVS-----G-------SF 111 (541)
T ss_pred hhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----C-------ch
Confidence 333444555778889999997 6888999999998778888888888777777777765444410 0 35
Q ss_pred HHHHHhhcCccchhhhHhhHHHHHHHHHH-HHHHhhcccccccc-cccCcchhhhhhhHHHhhh--cccCCCCCchHH-H
Q 011966 121 FEVLDGLLGPYWKAVGLAFNCTFLLFGSV-IQLIACASNIYYIN-DNLDKRTWTYIFGACCATT--VFIPSFHNYRLW-S 195 (474)
Q Consensus 121 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~-~yli~~~~~~~~~~-~~~~~~~~~~i~~~i~~pl--~~~~~l~~l~~~-s 195 (474)
..-+.+..+|....... -+..+.+...+ ..+...+..+++.. +..+...|..++.++++.+ .-.|-..+-.++ |
T Consensus 112 ~~ya~rfvdpa~GFa~g-WnYw~~w~v~~~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s 190 (541)
T COG0833 112 STYATRFVDPAFGFALG-WNYWLNWAVTLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFS 190 (541)
T ss_pred hhhhhhhcCchHHHHHH-HHHHHHHHHHhhHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcccccceehHHHH
Confidence 55555666655443322 23333333333 44545444455554 3347778888877655544 446666665544 3
Q ss_pred HHHHHHHHHHHHH--hhhhhhhcCCCC-CCCc---C--CCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCccc-hHH
Q 011966 196 FLGLGMTTYTAWY--LTIAAFVHGQVD-GVTH---S--GPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKF-KSI 266 (474)
Q Consensus 196 ~~~~~~~~~~~~~--i~~~~~~~g~~~-~~~~---~--~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~~-~~~ 266 (474)
.+=++.++.+.++ ++..+...+..+ +..+ + -+..+.++...+-+..|||.|..++----.|-+||+|- +++
T Consensus 191 ~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkA 270 (541)
T COG0833 191 SIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKA 270 (541)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHH
Confidence 3333333321111 111111111111 1111 1 24557788888888999999999999889999999884 666
Q ss_pred HHHHHHHHHHHHHh
Q 011966 267 YLLATLYVFTLTIP 280 (474)
Q Consensus 267 ~~~s~~~~~~~y~~ 280 (474)
..-.+-=..++|+.
T Consensus 271 ik~vfwRIl~FYi~ 284 (541)
T COG0833 271 IKQVFWRILLFYIL 284 (541)
T ss_pred HHHHHHHHHHHHHH
Confidence 65555555556643
No 48
>PRK11375 allantoin permease; Provisional
Probab=98.30 E-value=0.00027 Score=73.84 Aligned_cols=210 Identities=8% Similarity=-0.013 Sum_probs=94.7
Q ss_pred hhhHHHhhhcccCCCCCchHHHHHHHHHHHHHHHHhhhhhhhcCCCCCC-Cc------CCCchHHHHHHHHHHHHHHhc-
Q 011966 174 IFGACCATTVFIPSFHNYRLWSFLGLGMTTYTAWYLTIAAFVHGQVDGV-TH------SGPSTLVLYFTGATNILYTFG- 245 (474)
Q Consensus 174 i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~g~~~~~-~~------~~~~~~~~~~~~~~i~~faf~- 245 (474)
++.++..++.+ ...+.++++..++...+....+.+++..+.+....+. +. ........+..++...+=++.
T Consensus 164 i~~~l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~ 242 (484)
T PRK11375 164 IFWLVNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAA 242 (484)
T ss_pred HHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHH
Confidence 44455556554 4456677766666555433222222223222111111 11 111112334444433333343
Q ss_pred CceehhhhhhhccCCccchHHHHHHHHHHHHHHHhhHhHH----HHhhccccccccccccCCCCchHHHHHHHHHHHHHH
Q 011966 246 GHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAV----YWAFGDQLLTHSNAFSLLPRSRWRDVAVILMLIHQF 321 (474)
Q Consensus 246 ~h~~~~~i~~~mk~p~~~~~~~~~s~~~~~~~y~~~gi~G----y~~fG~~~~~~~~il~~l~~~~~~~i~~i~~~i~l~ 321 (474)
.-.+.|..-|..|++++-.+...+++.+...+...+|+.. ...||....|..+++....+......+-+...++..
T Consensus 243 ~~~~~~D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~~~~~~~a~l~~v~a~~ 322 (484)
T PRK11375 243 PAVSASDFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDSLFASFFAVLVILMTTI 322 (484)
T ss_pred HHccccchhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3458899999998887655444445544444333333322 346665542222333333222222233344444444
Q ss_pred Hh-hhhhhhhHHHHHHHHHcCCCCccchhhhhhhHhHHHHHHHHHH--hcCC---chhHHHhhhhHHHhhHHHh
Q 011966 322 IT-FGFACTPLYFVWEKVVGMHDTKSICLRALARLPVVIPIWFLAI--IFPF---FGPINSAVGALLVSFTVYI 389 (474)
Q Consensus 322 ~s-~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~--~ip~---~~~i~~lvGa~~~~~l~fi 389 (474)
.+ ...+..|.-..+.+.++++ -+.+|... +.-++..+++. .+.+ |..++++.|++.+.+...+
T Consensus 323 ~tN~~~N~ys~~~~l~~l~pk~---i~~~~~~~--i~~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~gIm 391 (484)
T PRK11375 323 STNATGNIIPAGYQIAALAPTK---LTYKNGVL--IASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVM 391 (484)
T ss_pred HHHHHhhcccHHHHHHHhCcCc---cchhhHHH--HHHHHHHHhccHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 2345666666666666421 11222211 11112222221 1223 7788888888877655444
No 49
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.30 E-value=0.0029 Score=66.36 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCceehhhhhhhccCCccc-hHHHHHHHHHHHHHHHh
Q 011966 233 YFTGATNILYTFGGHAVTVEIMHAMWKPQKF-KSIYLLATLYVFTLTIP 280 (474)
Q Consensus 233 ~~~~~~i~~faf~~h~~~~~i~~~mk~p~~~-~~~~~~s~~~~~~~y~~ 280 (474)
+..++-...|+|.|-......-+|+|||+|- ++....+..+..+++..
T Consensus 219 ~~~~~~~~~fsf~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~ 267 (482)
T TIGR00907 219 FLLGLLNPAWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFC 267 (482)
T ss_pred hhhhhhhhHHHhcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHH
Confidence 4445555779999999999999999999874 88887777766554433
No 50
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.29 E-value=5.2e-05 Score=79.73 Aligned_cols=335 Identities=12% Similarity=0.023 Sum_probs=162.6
Q ss_pred HHHHHhhhhhhhc-hhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHHHhhcC
Q 011966 51 FSCASNQVAQVLL-TLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLG 129 (474)
Q Consensus 51 ~~l~~~~iG~GiL-sLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G 129 (474)
+.-+.+++|+|+. ....+.++.|=..-++..++++..+..++.-+.+...++|.. .+ ++..-+++..|
T Consensus 39 miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~---aG--------s~~~ya~~~i~ 107 (554)
T KOG1286|consen 39 MLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVS---AG--------SFYTYAYRFVG 107 (554)
T ss_pred EEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccc---cc--------cceeeeeeeeC
Confidence 3356788999985 456788888866555555566666555554445443333321 00 12222234466
Q ss_pred ccchhhhHhhHHHHHHHHHHHHHHhhcccccccc---------cccCcchhhhhhh--HHHhhhcccCCCCCchHHHHHH
Q 011966 130 PYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIN---------DNLDKRTWTYIFG--ACCATTVFIPSFHNYRLWSFLG 198 (474)
Q Consensus 130 ~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~---------~~~~~~~~~~i~~--~i~~pl~~~~~l~~l~~~s~~~ 198 (474)
+.+..++..-..+.-...+-......+..+.++. +..+...|..++. .+++.+.-.+-..+.+....+-
T Consensus 108 e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~ 187 (554)
T KOG1286|consen 108 ESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFSLAFN 187 (554)
T ss_pred cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeehHHHH
Confidence 6554443322222111112122222222222221 3334445544332 2333334444433333333222
Q ss_pred -HHHHHHHHH--HhhhhhhhcCCCCCC---Cc------CCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCccc-hH
Q 011966 199 -LGMTTYTAW--YLTIAAFVHGQVDGV---TH------SGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKF-KS 265 (474)
Q Consensus 199 -~~~~~~~~~--~i~~~~~~~g~~~~~---~~------~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~~-~~ 265 (474)
++.++-+.+ +++..+...++..+. ++ ..|..+.+++.++-+..|+|.|-..+-..-.|-|||+|- ++
T Consensus 188 kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~IP~ 267 (554)
T KOG1286|consen 188 KILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAIPK 267 (554)
T ss_pred HHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccccH
Confidence 111111111 111122222221121 11 113346778888999999999999999999999999884 88
Q ss_pred HHHHHHHHHHHHHHhhHhHHHHhhccccccccccccCCC----------CchHH---HHHHHHHHHHHHHhhhhhhhhHH
Q 011966 266 IYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLLP----------RSRWR---DVAVILMLIHQFITFGFACTPLY 332 (474)
Q Consensus 266 ~~~~s~~~~~~~y~~~gi~Gy~~fG~~~~~~~~il~~l~----------~~~~~---~i~~i~~~i~l~~s~pl~~~p~~ 332 (474)
....++..++++|+...+.-=+.-.-+ .+++..+-+ ..... .+.++...+.+.++---.++|.-
T Consensus 268 ai~~s~~ri~~~Yi~~~~~l~l~vpy~---~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~s 344 (554)
T KOG1286|consen 268 AIKQSLLRILLFYILSSIVLGLLVPYN---DPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGS 344 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHheEEeccC---ccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhH
Confidence 888899989999987766443321111 111222222 11112 26666666666666555566666
Q ss_pred HHHHHHHcCCC------CccchhhhhhhHhHHHH-HHHHHHhcCC-----chhHHHhhhhHHHhhHHHhhhHHHHHHHhc
Q 011966 333 FVWEKVVGMHD------TKSICLRALARLPVVIP-IWFLAIIFPF-----FGPINSAVGALLVSFTVYIIPALAHMLTYR 400 (474)
Q Consensus 333 ~~~~~~~~~~~------~~~~~~~~~~r~~~v~~-~~~iA~~ip~-----~~~i~~lvGa~~~~~l~filP~l~~l~~~~ 400 (474)
+.+-.+.+... +-++..+-...+....+ ..+.+..... ++.++++.|-- +.+++.+=++.|+++++
T Consensus 345 R~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~--tl~~w~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 345 RVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIG--TLFAWTLVALSHLRFRY 422 (554)
T ss_pred HHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHH--HHHHHHHHHHHHeeeee
Confidence 65544432110 00111233333333333 3333333322 47788876543 35555555666666654
Q ss_pred c
Q 011966 401 S 401 (474)
Q Consensus 401 ~ 401 (474)
.
T Consensus 423 a 423 (554)
T KOG1286|consen 423 A 423 (554)
T ss_pred c
Confidence 4
No 51
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.29 E-value=0.0041 Score=65.51 Aligned_cols=52 Identities=12% Similarity=0.159 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCceehhhhhhhccCCcc-chHHHHHHHHHHHHHHHhhHh
Q 011966 232 LYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKSIYLLATLYVFTLTIPSAA 283 (474)
Q Consensus 232 ~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~-~~~~~~~s~~~~~~~y~~~gi 283 (474)
+++.++....|+|.|-......-+|+|||+| .+|....+...+.++|+...+
T Consensus 212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~ 264 (496)
T PRK15238 212 AVLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIF 264 (496)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHH
Confidence 4666677789999999999999999999987 588888888888888876543
No 52
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.26 E-value=0.00042 Score=70.31 Aligned_cols=257 Identities=13% Similarity=0.069 Sum_probs=138.6
Q ss_pred HHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhccc--CCCCCchHHHHHHH
Q 011966 122 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFI--PSFHNYRLWSFLGL 199 (474)
Q Consensus 122 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--~~l~~l~~~s~~~~ 199 (474)
.++|..||.+|.++....+...+.|=.....++.++.... .+..+...|+++.++++...+.+ |-++.+.+.+..-.
T Consensus 85 i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~-~~~~~~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~ 163 (442)
T COG1457 85 ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGS-GTGLPVWAGILIIGVLMTLVTIFGYRALHKLERIAVPLL 163 (442)
T ss_pred eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhcccccc-CCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4567789999999988888888878777777777764322 25556666777777777766654 33444444433333
Q ss_pred HHHHHHHHHhhhhhhh-cCCCCCCCcCCCchHHHHHHHHHHHHHH-hcCceehhhhhhhccCCcc--chHHHHHHHHHHH
Q 011966 200 GMTTYTAWYLTIAAFV-HGQVDGVTHSGPSTLVLYFTGATNILYT-FGGHAVTVEIMHAMWKPQK--FKSIYLLATLYVF 275 (474)
Q Consensus 200 ~~~~~~~~~i~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~i~~fa-f~~h~~~~~i~~~mk~p~~--~~~~~~~s~~~~~ 275 (474)
...+ .+.++.... ++..+...-..|.+...+..+++..+=. -..-+......+-+|+|+. .-.....+.....
T Consensus 164 ~~lf---~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~ 240 (442)
T COG1457 164 LLLF---LYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGT 240 (442)
T ss_pred HHHH---HHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHH
Confidence 2222 223333333 2222222222355555665554432222 2345778888888988884 3333334444445
Q ss_pred HHHHhhHhHHHHhhccccccccccccCCCCchHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHcCCCCccchhhhhhhH
Q 011966 276 TLTIPSAAAVYWAFGDQLLTHSNAFSLLPRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVGMHDTKSICLRALARL 355 (474)
Q Consensus 276 ~~y~~~gi~Gy~~fG~~~~~~~~il~~l~~~~~~~i~~i~~~i~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~r~ 355 (474)
.+-...|.+...+=|+... ...+...+.+ +...+.+...+..+.+=-.++++....+.+..+ +.++..+.+...
T Consensus 241 ~~~~ilGa~~a~a~g~~~~-~~~~~~~~G~--~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~---~l~k~~~~v~~~ 314 (442)
T COG1457 241 SFMMILGAALAAAAGNADS-IADVMLGLGG--FGLPAILILVLGTVTTNANNLYSAGLSFANIIP---KLSKVTRVVIAG 314 (442)
T ss_pred HHHHHHHHHHHHhcCCCch-HHHHHHhccc--HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhh---hhhhHHHHHHHH
Confidence 5556677777766665530 1233333332 444555555555555555555555555555443 122233333222
Q ss_pred hHHHHHHHHHHh----cCCchhHHHhhhhHHHhhHHHhh
Q 011966 356 PVVIPIWFLAII----FPFFGPINSAVGALLVSFTVYII 390 (474)
Q Consensus 356 ~~v~~~~~iA~~----ip~~~~i~~lvGa~~~~~l~fil 390 (474)
+. ..+++|+. ..+++.++.+.|+.........+
T Consensus 315 v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~i 351 (442)
T COG1457 315 VG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVMI 351 (442)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 33444443 45677788887777665554443
No 53
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.15 E-value=4e-05 Score=80.36 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHHhcCceehhhhhhhccCCccc-hHHHHHHHHHHHHHHHhhHhHHHHhhccc
Q 011966 229 TLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKF-KSIYLLATLYVFTLTIPSAAAVYWAFGDQ 292 (474)
Q Consensus 229 ~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~~-~~~~~~s~~~~~~~y~~~gi~Gy~~fG~~ 292 (474)
++.+++.++....++|.|-......-.|.|||+|- ++....++....++|+......-...+.+
T Consensus 198 ~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 198 GFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred chhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence 36788999999999999999999999999999885 88888888888888887666555555544
No 54
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.13 E-value=0.0054 Score=64.25 Aligned_cols=52 Identities=15% Similarity=0.264 Sum_probs=41.8
Q ss_pred HHHHHhcCceehhhhhhhccCCcc-chHHHHHHHHHHHHHHHhhHhHHHHhhc
Q 011966 239 NILYTFGGHAVTVEIMHAMWKPQK-FKSIYLLATLYVFTLTIPSAAAVYWAFG 290 (474)
Q Consensus 239 i~~faf~~h~~~~~i~~~mk~p~~-~~~~~~~s~~~~~~~y~~~gi~Gy~~fG 290 (474)
.+.|+|.|-......-+|+|||+| .++....+..++.++|+...+.-...-+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 357899999999999999999987 5899999999999999775554433333
No 55
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.12 E-value=0.0024 Score=65.61 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=78.2
Q ss_pred HHHHHHHhcCceehhhhhhhccCCccc-hHHHHHHHHHHHHHHHhhHhHHHHhhcccccccccccc-CCCCchHHHH---
Q 011966 237 ATNILYTFGGHAVTVEIMHAMWKPQKF-KSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFS-LLPRSRWRDV--- 311 (474)
Q Consensus 237 ~~i~~faf~~h~~~~~i~~~mk~p~~~-~~~~~~s~~~~~~~y~~~gi~Gy~~fG~~~~~~~~il~-~l~~~~~~~i--- 311 (474)
+-.-++++.|-..-..+-+|-||+++- ++....+..+..++=.++-+.-..+-+++. +.+++ +.+++.....
T Consensus 258 f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~---~~v~ns~~g~p~~~i~~~~ 334 (550)
T KOG1289|consen 258 FFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDL---DAVLNSSLGQPIVQIYYQA 334 (550)
T ss_pred hccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchH---HHHhcCCCCChHHHHHHHh
Confidence 333455566667778888899999885 666666666666554444444455555443 23333 3333221111
Q ss_pred --------HHHHHHHHHHHhhhhhhhhHHHHHHHHHc-----------CCCCccchhhhhhhHhHHHHHHHHHHhcCC--
Q 011966 312 --------AVILMLIHQFITFGFACTPLYFVWEKVVG-----------MHDTKSICLRALARLPVVIPIWFLAIIFPF-- 370 (474)
Q Consensus 312 --------~~i~~~i~l~~s~pl~~~p~~~~~~~~~~-----------~~~~~~~~~~~~~r~~~v~~~~~iA~~ip~-- 370 (474)
...+..+.+++.-...+...-+..-..-+ +-+++.+.....+....++...+.-+..++
T Consensus 335 lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~ 414 (550)
T KOG1289|consen 335 LGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASAT 414 (550)
T ss_pred cCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHH
Confidence 11111122222111111111111111111 001111222233343444444444455666
Q ss_pred -chhHHHhhhhHHHhhHHHhhhHHHHHHHhcch
Q 011966 371 -FGPINSAVGALLVSFTVYIIPALAHMLTYRSA 402 (474)
Q Consensus 371 -~~~i~~lvGa~~~~~l~filP~l~~l~~~~~~ 402 (474)
|+.+++. +.....++|..|..+.+...|++
T Consensus 415 Af~Alfs~--a~i~l~~Ay~iP~~~rlf~~r~~ 445 (550)
T KOG1289|consen 415 AFNALFSA--AAIALFIAYAIPIFCRLFFGRDD 445 (550)
T ss_pred HHHHHHHH--HHHHHHHHHHHhHHhheeecccc
Confidence 4555553 56677899999999988887763
No 56
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.03 E-value=0.0031 Score=65.42 Aligned_cols=175 Identities=14% Similarity=0.007 Sum_probs=86.0
Q ss_pred cHHHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccc----cccc---cC------cchhhhhhhHHHhhhccc
Q 011966 119 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYY----INDN---LD------KRTWTYIFGACCATTVFI 185 (474)
Q Consensus 119 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~----~~~~---~~------~~~~~~i~~~i~~pl~~~ 185 (474)
++..+.|..||.+|..+..++..+...|=...+....++.+.. ..+. .+ ...+.+++.++..++...
T Consensus 77 ~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~ 156 (442)
T TIGR00800 77 PFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFF 156 (442)
T ss_pred CcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHc
Confidence 4667888999999987766555544433333333333322211 1111 11 112333444555554444
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHhhhhhhh-cCCCC--CCC--cCCCchHHHHHHHHHHHH-HHhcCceehhhhhhhccC
Q 011966 186 PSFHNYRLWSFLGLGMTTYTAWYLTIAAFV-HGQVD--GVT--HSGPSTLVLYFTGATNIL-YTFGGHAVTVEIMHAMWK 259 (474)
Q Consensus 186 ~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~-~g~~~--~~~--~~~~~~~~~~~~~~~i~~-faf~~h~~~~~i~~~mk~ 259 (474)
.-.+-++.....+.........+.++.... .|..+ ... ..++.....+..++...+ +.-..-.+.+...+.+|+
T Consensus 157 ~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~ 236 (442)
T TIGR00800 157 FGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKS 236 (442)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCC
Confidence 333333334444433322111111111112 22111 111 122334455555554432 222345789999999999
Q ss_pred CccchHHHHHHHHHHHHHHHhhHhHHHHh----hcccc
Q 011966 260 PQKFKSIYLLATLYVFTLTIPSAAAVYWA----FGDQL 293 (474)
Q Consensus 260 p~~~~~~~~~s~~~~~~~y~~~gi~Gy~~----fG~~~ 293 (474)
+++-.+....++....+....+|+.+-.. +|+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 237 KKTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 88765556666666666666677766655 77554
No 57
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.79 E-value=0.035 Score=58.69 Aligned_cols=47 Identities=9% Similarity=0.157 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCceehhhhhhhccCCcc-chHHHHHHHHHHHHHHHhhH
Q 011966 236 GATNILYTFGGHAVTVEIMHAMWKPQK-FKSIYLLATLYVFTLTIPSA 282 (474)
Q Consensus 236 ~~~i~~faf~~h~~~~~i~~~mk~p~~-~~~~~~~s~~~~~~~y~~~g 282 (474)
.+..+.|+|.|-......-+|+|||+| .++....+..++.++|....
T Consensus 199 ~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 199 VFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHH
Confidence 344468999999999999999999977 68888888887787776543
No 58
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.79 E-value=0.019 Score=58.34 Aligned_cols=256 Identities=10% Similarity=0.042 Sum_probs=120.3
Q ss_pred cHHHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccc----cccCcchhhhhhhHHHhhhcccCCCCCchHH
Q 011966 119 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIN----DNLDKRTWTYIFGACCATTVFIPSFHNYRLW 194 (474)
Q Consensus 119 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~----~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 194 (474)
++.-+.|..||++|..+......+...|=-..+....++.+..+. +..+...+..+++++..+.+.. ..+.++++
T Consensus 59 ~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-G~~~i~~~ 137 (386)
T TIGR02358 59 SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEESPMLWILIVGILVTLWLLS-GPLAFVWL 137 (386)
T ss_pred CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 577899999999998776655544433333333333333322211 1111233455555555555543 35667777
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCCCCCcCCCchHHHHHHHHHHHH-HHhcCceehhhhhhhccCCccchHHHHHHHHH
Q 011966 195 SFLGLGMTTYTAWYLTIAAFVHGQVDGVTHSGPSTLVLYFTGATNIL-YTFGGHAVTVEIMHAMWKPQKFKSIYLLATLY 273 (474)
Q Consensus 195 s~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~-faf~~h~~~~~i~~~mk~p~~~~~~~~~s~~~ 273 (474)
..++...+....+...+....+...++... .+.+ ..+..++...+ +.-..-+..|+..|..|++++-.....++..+
T Consensus 138 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~i 215 (386)
T TIGR02358 138 NNWSVWLLLIATLWLLVVVFSKADLSELWN-RAGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGYFI 215 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhcC-CCCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceehHHHHHHHH
Confidence 776666555433333332333221111111 1111 22222332221 11123345889999988887765556667766
Q ss_pred HHHHHHhhHhHHHHhhccccccccccccCCCCchHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHcCCCCccchhhhhh
Q 011966 274 VFTLTIPSAAAVYWAFGDQLLTHSNAFSLLPRSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVGMHDTKSICLRALA 353 (474)
Q Consensus 274 ~~~~y~~~gi~Gy~~fG~~~~~~~~il~~l~~~~~~~i~~i~~~i~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~ 353 (474)
...+...+|.....+.++.- ...++... .....+-++..++...+-..+..+.-..+.+.+++. +++++..
T Consensus 216 ~~~~~~~~G~~~~~a~~~~d--~~~~~~~~---g~~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~~~~---~~~~~~~- 286 (386)
T TIGR02358 216 GSCWMYFLGLAVTLATGQTD--IISILAGA---GLGIPALLIILLSTVTTTFMDIYSAAISTGNLLPRL---KVKHLAI- 286 (386)
T ss_pred HHHHHHHHHHHHHHhcCCCC--HHHHHHhc---cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh---cchHHHH-
Confidence 66666777776666655431 11222211 111122233334444443444555555555554311 1112211
Q ss_pred hHhHHHHHHHHHHh--cCCchhHHHhhhhHHHhhHHH
Q 011966 354 RLPVVIPIWFLAII--FPFFGPINSAVGALLVSFTVY 388 (474)
Q Consensus 354 r~~~v~~~~~iA~~--ip~~~~i~~lvGa~~~~~l~f 388 (474)
+..++..+++.. ...+..++++.|....+....
T Consensus 287 --i~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~~gI 321 (386)
T TIGR02358 287 --GVGVLGTLIALLFPVDKYENFLLLIGSVFAPLYAV 321 (386)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222333322 345777777777666544433
No 59
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.55 E-value=0.039 Score=53.45 Aligned_cols=130 Identities=15% Similarity=0.165 Sum_probs=77.8
Q ss_pred HHHHHHHhhhhhhhchhHH---HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHHH
Q 011966 49 AWFSCASNQVAQVLLTLPY---SFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLD 125 (474)
Q Consensus 49 a~~~l~~~~iG~GiLsLP~---af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~ 125 (474)
-.|-.+.+++|+|.-+==- =|.+-|+. |..-.++.+.+-..++..+.+.-.+.+. .+|.|.-+
T Consensus 8 ~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~a-------------~~y~~~~~ 73 (349)
T COG3949 8 WAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFNA-------------TSYREILK 73 (349)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcc-------------cchHHHHH
Confidence 3455667899999644222 23334554 4555555566656665544433222111 16999999
Q ss_pred hhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhh--hhhHHHhhhcccCCCCCchHHH
Q 011966 126 GLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTY--IFGACCATTVFIPSFHNYRLWS 195 (474)
Q Consensus 126 ~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~--i~~~i~~pl~~~~~l~~l~~~s 195 (474)
..+||+...+.++...+++++.++.=+-..++. +++.++..+|.- +...++..+.++++.+.+-.+.
T Consensus 74 ~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~---~~e~~~lP~wiGali~i~~v~i~lfl~~vegi~tvn 142 (349)
T COG3949 74 YVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSL---LEEMFGLPYWIGALIIILLVLILLFLGRVEGIITVN 142 (349)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhccchhH---HHHHhCccHHHHHHHHHHHHHHHHHHhcccceeeeh
Confidence 999999999999999999988886544333323 245555566653 3334444455666666665443
No 60
>PRK11017 codB cytosine permease; Provisional
Probab=97.50 E-value=0.036 Score=56.76 Aligned_cols=170 Identities=12% Similarity=0.031 Sum_probs=78.3
Q ss_pred cHHHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcccCCCCCchHHHHHH
Q 011966 119 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFLG 198 (474)
Q Consensus 119 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 198 (474)
++..+.|..||.+|..+..+...+...+=...+....+..+.... +.+...+.+++.++..+..+.. .+.++++...+
T Consensus 72 ~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~-~~~~~~~~~i~~~l~~~~~~~G-~~~i~~~~~~~ 149 (404)
T PRK11017 72 STHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKAT-GLDINLLIVLSGLLMTVTAYFG-ISALTILSRIA 149 (404)
T ss_pred CHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 678899999999998766555444332222222222222221111 1233335555666666655543 34444554444
Q ss_pred HHHHHHHHHHhhhhhhhc-CCCCCC-CcCCCchHHHHHHHHHHHHHH-hcCceehhhhhhhccCCccchHHHHHHHHHHH
Q 011966 199 LGMTTYTAWYLTIAAFVH-GQVDGV-THSGPSTLVLYFTGATNILYT-FGGHAVTVEIMHAMWKPQKFKSIYLLATLYVF 275 (474)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~-g~~~~~-~~~~~~~~~~~~~~~~i~~fa-f~~h~~~~~i~~~mk~p~~~~~~~~~s~~~~~ 275 (474)
........+...+....+ |...+. +.. +.+...+..++...+=. -..-.+.++.-|..|++++-......++.+..
T Consensus 150 ~p~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~ 228 (404)
T PRK11017 150 VPAIALLGGYSVWLAVNDVGGLDGLKAIV-PAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGN 228 (404)
T ss_pred HHHHHHHHHHHHHHHHhccCchhhhhcCC-CCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHH
Confidence 333332221222222221 111111 111 11122344444432222 23457889999998887764333334444444
Q ss_pred HHHHhhHhHHHHhhcc
Q 011966 276 TLTIPSAAAVYWAFGD 291 (474)
Q Consensus 276 ~~y~~~gi~Gy~~fG~ 291 (474)
.+...+|...-.+.|+
T Consensus 229 ~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 229 SLMFIFGAAGAAVYGQ 244 (404)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 4444455554444443
No 61
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=96.81 E-value=0.48 Score=47.85 Aligned_cols=67 Identities=6% Similarity=-0.042 Sum_probs=39.5
Q ss_pred HHHHhhhhhhhchhHH-HHHhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHHHhhc
Q 011966 52 SCASNQVAQVLLTLPY-SFSQLG--MLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLL 128 (474)
Q Consensus 52 ~l~~~~iG~GiLsLP~-af~~~G--~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~ 128 (474)
.+..-..|+|.|-.|- --+++| |..+.+..++.+...-..+.. ..++. +. +|.++.++ +
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~~--------gG---~~~~l~~~-~ 64 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALALV--------GG---GYDSLSAR-I 64 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeeec--------CC---CHHHHHHH-h
Confidence 3555678999999984 444555 666777666666654444322 11110 11 58888877 7
Q ss_pred Cccchhhh
Q 011966 129 GPYWKAVG 136 (474)
Q Consensus 129 G~~~~~~~ 136 (474)
||+...+.
T Consensus 65 g~~f~~lf 72 (378)
T TIGR00796 65 GKVFGILF 72 (378)
T ss_pred ChHHHHHH
Confidence 77765544
No 62
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=96.74 E-value=0.24 Score=50.66 Aligned_cols=138 Identities=15% Similarity=0.143 Sum_probs=65.6
Q ss_pred chHHHHHHHHHhhhhh-hhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHH
Q 011966 45 SVYDAWFSCASNQVAQ-VLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 123 (474)
Q Consensus 45 s~~~a~~~l~~~~iG~-GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 123 (474)
+.+...+.+..+.+|+ .+++.|-...+.|+. +....+...+......+++.+ ++++. +..|..|.
T Consensus 9 ~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~---~~r~~----------~~~T~~e~ 74 (406)
T PF00474_consen 9 GWWVVAFSLVATWISAWTFIGFPGFAYSYGIS-GLWYAIGYAIGFLLFALFFAP---RLRRS----------GAVTIPEY 74 (406)
T ss_dssp -HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GG-GGHHHHHHHHHHHHHHHHTHH---HHHHT----------T--SHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-eeeeccccchhHHHHHHHHHH---hhccc----------chhhhhhh
Confidence 4566667777766665 568889888888875 332222222222222333332 22211 11267888
Q ss_pred HHhhcCccc--hhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcccCCCCCchHHHHH
Q 011966 124 LDGLLGPYW--KAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFL 197 (474)
Q Consensus 124 ~~~~~G~~~--~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 197 (474)
-++-||++. +.+..+..+++...-...++...+..+... .+++.....++.+++++.....--++...+...+
T Consensus 75 ~~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~-~gi~~~~~~~i~~~i~~iYt~~GGl~av~~td~i 149 (406)
T PF00474_consen 75 LEKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVL-FGIPYNTAILIVGVIVIIYTFFGGLRAVAWTDFI 149 (406)
T ss_dssp HHHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHTTCTT------SHHHH
T ss_pred hhhhcCCchhhhhhcccccchhhhhhhhccccccccchhhc-cchhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHH
Confidence 777799988 554444444444444445554444433322 2345555555555555555666556665555444
No 63
>PRK12488 acetate permease; Provisional
Probab=96.72 E-value=1.1 Score=47.85 Aligned_cols=138 Identities=14% Similarity=0.070 Sum_probs=67.8
Q ss_pred chHHHHHHHHHhhhhhh-hchhHHHHHhcchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhcccccccccccHHH
Q 011966 45 SVYDAWFSCASNQVAQV-LLTLPYSFSQLGMLSGIILQIFYGIMGSWT-AYLISVLYVEYRSRKEKENVSFKNHVIQWFE 122 (474)
Q Consensus 45 s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~l~~~~~~s~~s-~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 122 (474)
+.+...+.+..+.++++ .++.|-.....|+- +....+. ..+.+.- ..++.+ ++++. ...|.+|
T Consensus 70 ~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~~g-~~~g~~~~~~~~a~---~lr~~----------g~~T~~d 134 (549)
T PRK12488 70 TGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYALG-VLAGWPIILFLIAE---RLRNL----------GKYTFAD 134 (549)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHHHH-HHHHHHHHHHHHHH---HHHHC----------CCcchHH
Confidence 55666666777666555 58899777778874 3222111 1111111 122222 22211 0126777
Q ss_pred HHHhhcC-ccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcccCCCCCchHHHHHH
Q 011966 123 VLDGLLG-PYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFLG 198 (474)
Q Consensus 123 l~~~~~G-~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 198 (474)
.-++=|| |+.+.+..+...+....-...++...+..++.+ .+++...-+++.++++..-+..--++...+...+=
T Consensus 135 ~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l-~gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ 210 (549)
T PRK12488 135 VVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELL-FGISYLYAVVIVGALMVLYVTFGGMLATTWVQIIK 210 (549)
T ss_pred HHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 5554466 556666655554444333344444444333332 23444444455555555556666666665555543
No 64
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=96.52 E-value=1.4 Score=46.42 Aligned_cols=141 Identities=14% Similarity=0.048 Sum_probs=78.9
Q ss_pred hHHHHHHHHHhhhh-hhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHH
Q 011966 46 VYDAWFSCASNQVA-QVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVL 124 (474)
Q Consensus 46 ~~~a~~~l~~~~iG-~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~ 124 (474)
.+-......-+..+ .-.+++|-...+.|+......... .+.......++..-..++.+ +++..|..|.-
T Consensus 42 ~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~-~~~~~~~~~~~~~rl~~~~~---------~~~~~T~~d~l 111 (493)
T COG0591 42 PFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGL-LIGAFLLWLLFAPRLRRLAK---------ARGATTIPDFL 111 (493)
T ss_pred hHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHH-HHHHHHHHHHHHHHHHHHhc---------ccCCccHHHHH
Confidence 33444555555555 889999999999997643333322 12222223233322223321 12234788887
Q ss_pred HhhcC-ccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcccCCCCCchHHHHH
Q 011966 125 DGLLG-PYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFL 197 (474)
Q Consensus 125 ~~~~G-~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 197 (474)
++-|| |..+.+...+..++...-+..++...+..+....+ .+...-..+.+.++..-..+--+++..+...+
T Consensus 112 ~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~i 184 (493)
T COG0591 112 EARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-ISYVTGILIGALIVALYTFLGGLRAVVWTDFI 184 (493)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 77799 77787777777777777777777766655432222 44443333444445444555555555555443
No 65
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=96.44 E-value=1.3 Score=45.29 Aligned_cols=138 Identities=13% Similarity=0.083 Sum_probs=64.5
Q ss_pred chHHHHHHHHHhhhh-hhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHH
Q 011966 45 SVYDAWFSCASNQVA-QVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 123 (474)
Q Consensus 45 s~~~a~~~l~~~~iG-~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 123 (474)
+.+...+.+..+.+| ...++.|-...+.|+. +....+...+......++.... .+ + .+..|..|.
T Consensus 6 ~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~---~~-~---------~~~~T~~e~ 71 (407)
T TIGR00813 6 GGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPI---FI-N---------NGAYTMPEY 71 (407)
T ss_pred CcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HH-H---------cCCCchhHH
Confidence 445555566555544 4567888777777754 2222111111111112222211 11 1 012267887
Q ss_pred HHhhcCcc-chhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcccCCCCCchHHHHH
Q 011966 124 LDGLLGPY-WKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFL 197 (474)
Q Consensus 124 ~~~~~G~~-~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 197 (474)
-+.-||++ .+.+..+...+..+.-...++...+..+... .+++...-.++.++++..-...--++...+.-.+
T Consensus 72 l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~-~gi~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~i 145 (407)
T TIGR00813 72 LEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELI-TGLDLYLSLLLLGAITILYTVFGGLKAVVWTDTI 145 (407)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHcchHHHHHHHHH
Confidence 77778884 5555545445555444455554444433322 2344333344444444444555555554444443
No 66
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.32 E-value=0.027 Score=58.35 Aligned_cols=41 Identities=7% Similarity=-0.249 Sum_probs=25.8
Q ss_pred eehhhhhhhccCCccchHHHHHHHHHHHHHHHhhHhHHHHh
Q 011966 248 AVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWA 288 (474)
Q Consensus 248 ~~~~~i~~~mk~p~~~~~~~~~s~~~~~~~y~~~gi~Gy~~ 288 (474)
.+.+...+.+|++++-.+....++.........+|+.|...
T Consensus 219 ~~~~DysRy~~~~~~~~~~~~~~~~~~~~~~~~~g~lg~~~ 259 (440)
T PF02133_consen 219 PNASDYSRYAKSDTSAWWGFWLGFPGGFIPFVLVGILGAAA 259 (440)
T ss_dssp CCCHHHHTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccHHhhCCCCCCcEEEEeehhhhHHHHHHHHHHHHHHH
Confidence 55678889999888776666666666655555555555443
No 67
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=96.07 E-value=2.2 Score=44.15 Aligned_cols=204 Identities=11% Similarity=0.067 Sum_probs=94.0
Q ss_pred cccCCCCCchHHHHHHHHHHHHHHHHhhhhhhh--cC-----CCCCCCcCCCchHHHHHHHHHHHHHHhc-Cceehhhhh
Q 011966 183 VFIPSFHNYRLWSFLGLGMTTYTAWYLTIAAFV--HG-----QVDGVTHSGPSTLVLYFTGATNILYTFG-GHAVTVEIM 254 (474)
Q Consensus 183 ~~~~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~--~g-----~~~~~~~~~~~~~~~~~~~~~i~~faf~-~h~~~~~i~ 254 (474)
++.+.++++|++-..+-..+.+.+..+.+..+. .| +.++-..+.+.....++.++...+-.|. ..-|+|..-
T Consensus 185 ~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFs 264 (497)
T COG1953 185 VLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFT 264 (497)
T ss_pred HHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhh
Confidence 445557778877666554444332222222222 22 1121112223333334433332222232 346889999
Q ss_pred hhccCCccchHHHHHHHHH----HHHHHHhhHhHHHHhhccccccccccccCCCCchHHH-HHHHHHHHHHHH-hhhhhh
Q 011966 255 HAMWKPQKFKSIYLLATLY----VFTLTIPSAAAVYWAFGDQLLTHSNAFSLLPRSRWRD-VAVILMLIHQFI-TFGFAC 328 (474)
Q Consensus 255 ~~mk~p~~~~~~~~~s~~~----~~~~y~~~gi~Gy~~fG~~~~~~~~il~~l~~~~~~~-i~~i~~~i~l~~-s~pl~~ 328 (474)
+.-|+|+....--.++.-+ ..++=+.++...+..||+..-|+-++.+.++++.... ++-+.+++..+. ...-+.
T Consensus 265 Rfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~ 344 (497)
T COG1953 265 RFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATISTNIAANI 344 (497)
T ss_pred cccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHHhhhHHhcc
Confidence 9888876542221122222 2333445566778899999755567888887654443 222222222222 222234
Q ss_pred hhHHHHHHHHHcCCCCccchhhhhh---hHhHHHHHHHHHHhcCCchhHHHhhhhHHHhhHHHh
Q 011966 329 TPLYFVWEKVVGMHDTKSICLRALA---RLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYI 389 (474)
Q Consensus 329 ~p~~~~~~~~~~~~~~~~~~~~~~~---r~~~v~~~~~iA~~ip~~~~i~~lvGa~~~~~l~fi 389 (474)
.+.-..+.+.+++ . -..+|-.. -..+++.++-+=..-..|..+++..|++.+++...+
T Consensus 345 vsp~~D~s~l~Pk--~-in~krg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVm 405 (497)
T COG1953 345 VSPGYDLSALFPK--Y-INIKRGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVM 405 (497)
T ss_pred CChHHHHHHhccc--c-cchhhhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHH
Confidence 4433334344431 1 11233221 112222222222222236666776667777655544
No 68
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=96.00 E-value=2.5 Score=44.34 Aligned_cols=142 Identities=11% Similarity=0.049 Sum_probs=63.8
Q ss_pred chHHHHHHHHHhhhhh-hhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHH
Q 011966 45 SVYDAWFSCASNQVAQ-VLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 123 (474)
Q Consensus 45 s~~~a~~~l~~~~iG~-GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 123 (474)
+.+...+.+..+.+|+ ..++.|-...+.|+.. ................++.....+..++. +..|..|.
T Consensus 44 ~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~~---------~~~T~~e~ 113 (483)
T PRK09442 44 GGFVLAMTLIATYISASSFIGGPGAAYKYGLGW-VLLAMIQVPTVWLSLGILGKKFAILARKY---------NAVTLNDM 113 (483)
T ss_pred cHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------CCccHHHH
Confidence 4455556666655444 6688886666667642 11111100111111112222111111111 12378887
Q ss_pred HHhhcCccc-hhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcccCCCCCchHHHHH
Q 011966 124 LDGLLGPYW-KAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFL 197 (474)
Q Consensus 124 ~~~~~G~~~-~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 197 (474)
-++-||++. +.+..+......+.....++...+..+... .+++....+++.++++..-+.+.-++...+.-.+
T Consensus 114 l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~-~gi~~~~~iii~~~iv~iYt~~GGl~av~~TD~i 187 (483)
T PRK09442 114 LRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETA-TGISYETGLLIFGITVALYTAFGGFRAVVLTDAL 187 (483)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 777788664 344433333333333334444333333222 2344444555555555555666555555544433
No 69
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=95.90 E-value=2.7 Score=43.91 Aligned_cols=142 Identities=13% Similarity=0.063 Sum_probs=69.3
Q ss_pred chHHHHHHHHHhhhhhh-hchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHH
Q 011966 45 SVYDAWFSCASNQVAQV-LLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 123 (474)
Q Consensus 45 s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 123 (474)
+.+...+.+..+.+|++ .++.|-...+.|+......... ..........+..-..+.-++. +..|.+|.
T Consensus 43 ~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~T~~e~ 112 (471)
T TIGR02119 43 GGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQ-VPTGYFVLGVLGKKFAIISRKY---------NAITINDV 112 (471)
T ss_pred cHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc---------CCccHHHH
Confidence 55667777777777654 4678877777776421111100 0111111112221111111111 12378888
Q ss_pred HHhhcCccc-hhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcccCCCCCchHHHHH
Q 011966 124 LDGLLGPYW-KAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFL 197 (474)
Q Consensus 124 ~~~~~G~~~-~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 197 (474)
-++-||++. +.+..+....++++....++...+..+... .+++....+++.++++..-....-++...+...+
T Consensus 113 l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~-~gi~~~~~iii~~~iv~iYt~~GG~~av~~td~i 186 (471)
T TIGR02119 113 LKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESL-TGLSYLTALFIFSSSVLIYTTFGGFRAVALTDAI 186 (471)
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 777799665 555555555555554445544444333222 2345455555555555555666555555555444
No 70
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=94.69 E-value=7.3 Score=41.65 Aligned_cols=137 Identities=12% Similarity=0.101 Sum_probs=60.3
Q ss_pred chHHHHHHHHHhhh-hhhhchhHHHHHhcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhcccccccccccHHH
Q 011966 45 SVYDAWFSCASNQV-AQVLLTLPYSFSQLGMLSGIILQIFYGIMGS-WTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 122 (474)
Q Consensus 45 s~~~a~~~l~~~~i-G~GiLsLP~af~~~G~~~g~i~l~~~~~~s~-~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 122 (474)
+.+...+.+..+.+ +...++.|-...+.|+- +....+. ..+.+ ...+++.+ +.++. ...|..|
T Consensus 70 ~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~g-~~~~~~i~~~~~a~---~lrr~----------g~~T~~d 134 (549)
T TIGR02711 70 TGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSLG-FLVGWPIILFLIAE---RLRNL----------GRYTFAD 134 (549)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHH-HHHHHHHHHHHHHH---HHHHc----------CCccHHH
Confidence 34554555555544 45678888777777864 3322211 11111 11122222 22211 0126777
Q ss_pred HHHhhcC-ccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcccCCCCCchHHHHH
Q 011966 123 VLDGLLG-PYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFL 197 (474)
Q Consensus 123 l~~~~~G-~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 197 (474)
..++=|| |..+.+..+...+..+.-...++...+..++.+ .+++...-+++.++++..-+...-++...+.-.+
T Consensus 135 ~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~-~gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~i 209 (549)
T TIGR02711 135 VASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELL-FGLNYHVAVVLVGILMVMYVLFGGMLATTWVQII 209 (549)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 5554465 445555444333333222334444333333222 2334333344455555555555555554444433
No 71
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=94.68 E-value=6.9 Score=41.31 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=20.1
Q ss_pred chHHHHHHHHHhhhhhh-hchhHHHHHhcchh
Q 011966 45 SVYDAWFSCASNQVAQV-LLTLPYSFSQLGML 75 (474)
Q Consensus 45 s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~ 75 (474)
+.+-..+.+..+.+++. .++.|-...+.|+-
T Consensus 43 ~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~ 74 (502)
T PRK15419 43 GPFVTALSAGASDMSGWLLMGLPGAVFLSGIS 74 (502)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHH
Confidence 45555566665555544 57788877788875
No 72
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=94.63 E-value=0.53 Score=46.67 Aligned_cols=194 Identities=13% Similarity=0.087 Sum_probs=108.0
Q ss_pred ccCCchHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccH
Q 011966 41 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 120 (474)
Q Consensus 41 ~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 120 (474)
.-+++.+-.+-|=..++-|+|-+-=|..=.+-||+++.+-.++-+++.---. +|-..- .+.|++..+.
T Consensus 49 YvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVH--------D~~sl~----~SvR~~G~Si 116 (376)
T PF02554_consen 49 YVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVH--------DYGSLM----ASVRHKGKSI 116 (376)
T ss_pred CCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHH--------HHHHHh----hhhcCCCccH
Confidence 3445566677888889999999999988899999998887665433322111 111100 0112222378
Q ss_pred HHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcccCCCCCchHHHHHHHH
Q 011966 121 FEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFLGLG 200 (474)
Q Consensus 121 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 200 (474)
.|++++..||+++.+..++..+.+..+...+....++.+.. .+......+..+...+.+-+...|+-.++...+.+++.
T Consensus 117 ~~i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~-~p~~~~~~~~~I~~Ai~~G~~~y~~~~~~~~~t~i~vv 195 (376)
T PF02554_consen 117 GEIAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFVN-SPWAATSSLLFIPIAILFGLLVYKRGGNLGPATIIGVV 195 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHHHHhHhheecCCchHhhHHHHHH
Confidence 99999999999999999888888777776665555443321 11111122333333333333333443445556666655
Q ss_pred HHHHHHHHhhhhhhhcCCCCCCCcCCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCccc
Q 011966 201 MTTYTAWYLTIAAFVHGQVDGVTHSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKF 263 (474)
Q Consensus 201 ~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~~ 263 (474)
.+.. ++..|..-+.+. .+...+ -.+++.|..-..+.|+-.=+. |+++
T Consensus 196 ll~~--------~v~~G~~~p~~~---~~~~~W----~~ii~~Y~~iAs~lPVw~Llq-prdy 242 (376)
T PF02554_consen 196 LLLL--------AVWLGMYFPISL---LSVTTW----IIIIFIYYFIASVLPVWKLLQ-PRDY 242 (376)
T ss_pred HHHH--------HHHhhhhccccc---CcHHHH----HHHHHHHHHHHHHhhHHHHhC-chHH
Confidence 4332 222232111111 111112 124566666677778776554 5554
No 73
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=94.45 E-value=0.74 Score=47.12 Aligned_cols=87 Identities=17% Similarity=0.269 Sum_probs=49.7
Q ss_pred CchHHHHHHHHHhhhhhh-hchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHH
Q 011966 44 GSVYDAWFSCASNQVAQV-LLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFE 122 (474)
Q Consensus 44 ~s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~ 122 (474)
-|.+|+.+..+.+.+|+| ++++|-|.+.+|- .+++-+-+.+++..-+.+.-.....+|+++ +. ..++... ....
T Consensus 47 iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGp-GAvFWMWI~allGm~~~~~e~~L~~~yr~~-~~-~g~~~GG--P~yy 121 (425)
T TIGR00835 47 VSSFQALFTSLAARVGIGNIVGVATAIAIGGP-GAVFWMWVTAFIGMATKFVESTLAQKYRER-DA-DGVFRGG--PMYY 121 (425)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHeeee-CC-CCCEecC--hHHH
Confidence 589999999999999998 9999999888882 243444444444333333322222344432 11 1112211 1255
Q ss_pred HHHhhcCccchhh
Q 011966 123 VLDGLLGPYWKAV 135 (474)
Q Consensus 123 l~~~~~G~~~~~~ 135 (474)
+-+...||+...+
T Consensus 122 i~~gl~~k~lg~l 134 (425)
T TIGR00835 122 IKKGLGMRWLAVL 134 (425)
T ss_pred HHHHhCccHHHHH
Confidence 6566566654333
No 74
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=93.90 E-value=7.8 Score=38.88 Aligned_cols=77 Identities=8% Similarity=0.062 Sum_probs=40.0
Q ss_pred cHHHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcc--cCCCCCchHHHH
Q 011966 119 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVF--IPSFHNYRLWSF 196 (474)
Q Consensus 119 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~~~l~~l~~~s~ 196 (474)
+..|..++-+||+..+...+...+-........+...+..+..+ ...+...|.++.++..+.+.+ .++.+.+.....
T Consensus 43 ~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll-~g~~~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~ 121 (358)
T PF01566_consen 43 GLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLL-FGIPLWIWVLLVAVIAILLLWLSSGGYRRLERILK 121 (358)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 45677677788887766554444333333333333332222222 245566676666655555544 555555555443
No 75
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=93.78 E-value=9 Score=39.17 Aligned_cols=75 Identities=12% Similarity=0.176 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHHHHHHHhhhhhhh-cCCCCCCC------cCCCchHHHHHHHHHHHHHHhc-CceehhhhhhhccCCcc
Q 011966 191 YRLWSFLGLGMTTYTAWYLTIAAFV-HGQVDGVT------HSGPSTLVLYFTGATNILYTFG-GHAVTVEIMHAMWKPQK 262 (474)
Q Consensus 191 l~~~s~~~~~~~~~~~~~i~~~~~~-~g~~~~~~------~~~~~~~~~~~~~~~i~~faf~-~h~~~~~i~~~mk~p~~ 262 (474)
+.+.+-+-+...+...++++++++. .|..++.+ .+.-.+...+..++|...|+.. |-+.+.+--..++++++
T Consensus 167 IEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k~~~ 246 (439)
T COG0733 167 IEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSKKSD 246 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 5555554444444333345555555 23222221 1112234566778888888875 55666666777888877
Q ss_pred chH
Q 011966 263 FKS 265 (474)
Q Consensus 263 ~~~ 265 (474)
..+
T Consensus 247 l~~ 249 (439)
T COG0733 247 LVS 249 (439)
T ss_pred hhh
Confidence 643
No 76
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=93.14 E-value=11 Score=38.46 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=48.0
Q ss_pred HHHHHHcCCCCccchhhhhhhHhHHHHHHHHHHhcCCchhHHHhhhhHHHhhHHHhhhHHHHHHHhcc
Q 011966 334 VWEKVVGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHMLTYRS 401 (474)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~~ip~~~~i~~lvGa~~~~~l~filP~l~~l~~~~~ 401 (474)
.++...+.+ .+++.+|...|....+.+.++.+.+-+...++.+.+.+.+..+-+.+++++.+...|+
T Consensus 312 ~~~g~~~~~-~~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 312 VMEGFLNWR-IPLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred HHHhhhccc-CchHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 555555422 2345567777877777777776666699999999999988888888877777766554
No 77
>PRK09395 actP acetate permease; Provisional
Probab=92.49 E-value=17 Score=38.84 Aligned_cols=136 Identities=12% Similarity=0.086 Sum_probs=60.9
Q ss_pred chHHHHHHHHHhhhh-hhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHH
Q 011966 45 SVYDAWFSCASNQVA-QVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 123 (474)
Q Consensus 45 s~~~a~~~l~~~~iG-~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 123 (474)
+.+...+.+..+.+| ...++.|-.....|+. +....+...+......+++.+ +.++. ...|+.|.
T Consensus 72 ~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~-~~~~~~~~~~g~~~~~~~~~~---~~r~~----------g~~T~~d~ 137 (551)
T PRK09395 72 TGFQNGLAIAGDYMSAASFLGISALVFTSGYD-GLIYSIGFLVGWPIILFLIAE---RLRNL----------GKYTFADV 137 (551)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHH---HHhhC----------CCccHHHH
Confidence 345555556555555 4568888777777874 322211111111111122221 22211 11267886
Q ss_pred HHhhcCc-cchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcccCCCCCchHHH
Q 011966 124 LDGLLGP-YWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRLWS 195 (474)
Q Consensus 124 ~~~~~G~-~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s 195 (474)
-+.=||+ +.+.+..+...+..+.-...++...+..++.+ .+++....+++.++++..-+..--++...+.-
T Consensus 138 l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~-~gi~~~~~ili~~~i~~iYt~~GGm~av~~TD 209 (551)
T PRK09395 138 ASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLL-FGLNYHVAVVLVGVLMMVYVLFGGMLATTWVQ 209 (551)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 6655774 45665544443333232334443333333222 23444444455555555555554444444433
No 78
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=91.23 E-value=20 Score=36.99 Aligned_cols=79 Identities=8% Similarity=-0.002 Sum_probs=42.9
Q ss_pred cHHH-HHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcccCCCCCchHHHHH
Q 011966 119 QWFE-VLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFL 197 (474)
Q Consensus 119 ~y~~-l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 197 (474)
|..| ++++.--++.|++..+..++--+.-.+.+++-.+..+..+ -..+...-+++.++++..-..+.-|+..+|.-.+
T Consensus 105 T~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l-~gv~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~ 183 (529)
T COG4147 105 TFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLL-LGVPYHVGVVIGGILMMVYVVLGGMKATTWVQII 183 (529)
T ss_pred chHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hCCCceeehhhHhHHHHHHHHhcchhhhhHHHHH
Confidence 5666 5666666666765543333221122234444433333222 2344455556666777777778888888887665
Q ss_pred H
Q 011966 198 G 198 (474)
Q Consensus 198 ~ 198 (474)
=
T Consensus 184 q 184 (529)
T COG4147 184 Q 184 (529)
T ss_pred H
Confidence 3
No 79
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=90.81 E-value=21 Score=36.52 Aligned_cols=45 Identities=13% Similarity=0.117 Sum_probs=32.6
Q ss_pred cCCchHHHHHHHHHhhhhhh-hchhHHHHHhcchhHHHHHHHHHHHH
Q 011966 42 HGGSVYDAWFSCASNQVAQV-LLTLPYSFSQLGMLSGIILQIFYGIM 87 (474)
Q Consensus 42 ~~~s~~~a~~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~l~~~~~~ 87 (474)
.+-|.+||+..-+.+.+|+| +.+..-|...+|-. .+.-+-+++++
T Consensus 17 g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPG-AiFWMWi~a~~ 62 (416)
T PF01235_consen 17 GGISPFQALCTALAGTVGTGNIAGVATAIAIGGPG-AIFWMWISALL 62 (416)
T ss_pred CCcChHHHHHHHHHhccCcchHHHHHHHHHhhchh-HHHHHHHHHHH
Confidence 35699999999999999999 56788899888832 33333333433
No 80
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=90.10 E-value=27 Score=36.66 Aligned_cols=31 Identities=16% Similarity=0.289 Sum_probs=18.9
Q ss_pred chHHHHHHHHHhhhh-hhhchhHHHHHhcchh
Q 011966 45 SVYDAWFSCASNQVA-QVLLTLPYSFSQLGML 75 (474)
Q Consensus 45 s~~~a~~~l~~~~iG-~GiLsLP~af~~~G~~ 75 (474)
+.+-..+.+..+.++ ...++.|-.....|+.
T Consensus 39 ~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~ 70 (487)
T TIGR02121 39 GPFVTALSAGASDMSGWLLMGLPGALYVTGLS 70 (487)
T ss_pred cHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHH
Confidence 445555555555554 3467788666677875
No 81
>PRK15015 carbon starvation protein A; Provisional
Probab=89.74 E-value=6.1 Score=42.25 Aligned_cols=96 Identities=14% Similarity=0.084 Sum_probs=62.9
Q ss_pred CchHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHH
Q 011966 44 GSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 123 (474)
Q Consensus 44 ~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 123 (474)
++.+--+-|=..++-|+|-+-=|..=.+-||++|.+-.++-.++.- .+ +++-..- .+.|+...+..|+
T Consensus 83 t~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~G-------aV-hD~~~L~----~S~R~~GrSig~i 150 (701)
T PRK15015 83 TDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAG-------AV-QDFMVLF----VSTRRDGRSLGEL 150 (701)
T ss_pred CCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeec-------hh-hhhhhee----eeecCCCccHHHH
Confidence 3444455677789999999999998899999999887665333211 11 1111100 1122223378999
Q ss_pred HHhhcCccchhhhHhhHHHHHHHHHHHH
Q 011966 124 LDGLLGPYWKAVGLAFNCTFLLFGSVIQ 151 (474)
Q Consensus 124 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y 151 (474)
+++..||+++.+..+...+.+.......
T Consensus 151 a~~~iG~~~~~lfli~i~~iliiviAvf 178 (701)
T PRK15015 151 VKEEMGPTAGVIALVACFMIMVIILAVL 178 (701)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888777666655554433
No 82
>PRK00701 manganese transport protein MntH; Reviewed
Probab=88.02 E-value=36 Score=35.29 Aligned_cols=21 Identities=0% Similarity=-0.410 Sum_probs=15.2
Q ss_pred cHHHHHHhhcCccchhhhHhh
Q 011966 119 QWFEVLDGLLGPYWKAVGLAF 139 (474)
Q Consensus 119 ~y~~l~~~~~G~~~~~~~~~~ 139 (474)
+..|+.++-+||+..++..+.
T Consensus 95 ~l~~~ir~~~~~~~~~~~~~~ 115 (439)
T PRK00701 95 DLAQACRDRYPRPVVWFLWIQ 115 (439)
T ss_pred CHHHHHHHHCCchHHHHHHHH
Confidence 467888888999876655443
No 83
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=86.91 E-value=47 Score=35.51 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=21.0
Q ss_pred chHHHHHHHHHhhhh-hhhchhHHHHHhcchh
Q 011966 45 SVYDAWFSCASNQVA-QVLLTLPYSFSQLGML 75 (474)
Q Consensus 45 s~~~a~~~l~~~~iG-~GiLsLP~af~~~G~~ 75 (474)
+.+...+.+..+.++ ...++.|-.....|+.
T Consensus 35 ~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~ 66 (552)
T TIGR03648 35 PPVANGMATAADWMSAASFISMAGLIAFLGYD 66 (552)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHhChH
Confidence 556666777777664 4568888766667764
No 84
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=86.87 E-value=11 Score=39.51 Aligned_cols=98 Identities=13% Similarity=0.071 Sum_probs=64.2
Q ss_pred cCCchHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHH
Q 011966 42 HGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 121 (474)
Q Consensus 42 ~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 121 (474)
-+++.+-.+-|=..++-|+|-+-=|.-=+|-||.+|.+-+++-+.+.- +. ++|-..- .+.|+...|-.
T Consensus 50 VPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaG-aV-------hD~~~L~----~SvR~~G~Si~ 117 (575)
T COG1966 50 VPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAG-AV-------HDYFSLM----LSVRHGGKSIG 117 (575)
T ss_pred ccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhh-hh-------hhhhhee----eeeccCCccHH
Confidence 344556666778889999999999999999999999887665333211 11 1111000 11222233789
Q ss_pred HHHHhhcCccchhhhHhhHHHHHHHHHHHH
Q 011966 122 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQ 151 (474)
Q Consensus 122 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y 151 (474)
|++++.+|+..+.+..+...+.+..+....
T Consensus 118 ~ia~~~lG~~a~~~~~~~~l~iliiv~Avf 147 (575)
T COG1966 118 EIAGKYLGRTAKVFFLLLALILLILVGAVF 147 (575)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887766665554444433
No 85
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=74.04 E-value=1.1e+02 Score=31.47 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhhhhhhhchhHHHHH-hcc--hhHHHHHHHHHHHHH
Q 011966 46 VYDAWFSCASNQVAQVLLTLPYSFS-QLG--MLSGIILQIFYGIMG 88 (474)
Q Consensus 46 ~~~a~~~l~~~~iG~GiLsLP~af~-~~G--~~~g~i~l~~~~~~s 88 (474)
.+..-+.+..-..|+|=|=.|-..- ++| |+++.+-+++.+..-
T Consensus 5 ~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~l 50 (427)
T PF05525_consen 5 ILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGL 50 (427)
T ss_pred hhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3445567778889999999996553 344 887888877766653
No 86
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=72.78 E-value=1.6e+02 Score=32.57 Aligned_cols=43 Identities=19% Similarity=0.374 Sum_probs=29.9
Q ss_pred HHHHHhhhhhh-hchhHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 011966 51 FSCASNQVAQV-LLTLPYSFSQLGMLSGIILQIFYGIMGSWTAY 93 (474)
Q Consensus 51 ~~l~~~~iG~G-iLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ 93 (474)
.=.+-.+.|.= .+=|-|..-.+|...|.++.+++++.+..|..
T Consensus 122 LPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaI 165 (1075)
T KOG2082|consen 122 LPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAI 165 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444432 24567888889999899998888888888764
No 87
>PRK10484 putative transporter; Provisional
Probab=72.18 E-value=1.4e+02 Score=31.70 Aligned_cols=31 Identities=16% Similarity=-0.104 Sum_probs=18.4
Q ss_pred chHHHHHHHHHhhh-hhhhchhHHHHHhcchh
Q 011966 45 SVYDAWFSCASNQV-AQVLLTLPYSFSQLGML 75 (474)
Q Consensus 45 s~~~a~~~l~~~~i-G~GiLsLP~af~~~G~~ 75 (474)
+.+-..+.+..+.+ |...++.|-...+.|+.
T Consensus 41 ~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~ 72 (523)
T PRK10484 41 TGPVIAGSLLLTNLSTEQLVGLNGQAYASGMS 72 (523)
T ss_pred chHHHHHHHHHHHhhHHHHhcchHHHHHhCHH
Confidence 44555555555544 44567788666667754
No 88
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=67.41 E-value=1.6e+02 Score=30.44 Aligned_cols=35 Identities=14% Similarity=0.042 Sum_probs=28.7
Q ss_pred cccCCchHHHHHHHHHhhhhhhh-chhHHHHHhcch
Q 011966 40 LWHGGSVYDAWFSCASNQVAQVL-LTLPYSFSQLGM 74 (474)
Q Consensus 40 ~~~~~s~~~a~~~l~~~~iG~Gi-LsLP~af~~~G~ 74 (474)
..++-|.+||...-+.+.+|+|= -+..-|.+.+|-
T Consensus 59 ~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGP 94 (452)
T COG1115 59 GKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGP 94 (452)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCC
Confidence 34455899999999999999994 568888888883
No 89
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=67.24 E-value=59 Score=32.96 Aligned_cols=66 Identities=15% Similarity=0.067 Sum_probs=49.0
Q ss_pred cHHHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcc
Q 011966 119 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVF 184 (474)
Q Consensus 119 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~ 184 (474)
-..+++++.+|+.|..+..+...+-++.+++.....+++.+....+..+.+.|.++..++...++.
T Consensus 256 ~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k~~y~~~v~~~~l~s~~ia~ 321 (378)
T TIGR00796 256 ILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPKLSYKTWVIVFTLFSFIVAN 321 (378)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 467889999999999999888888888888888888777665543446667777766555544443
No 90
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=67.00 E-value=1.5e+02 Score=30.14 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=30.9
Q ss_pred HHHHHHHcCCCCccchhhhhhhHhHHHHHHHHHHhc--CCchhHHHhhhhHHHhhHHHhhhHHH
Q 011966 333 FVWEKVVGMHDTKSICLRALARLPVVIPIWFLAIIF--PFFGPINSAVGALLVSFTVYIIPALA 394 (474)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~~i--p~~~~i~~lvGa~~~~~l~filP~l~ 394 (474)
..++..++.+. +++.+|...|.+.++.+.+++... .+...++-+... ...+.+|...
T Consensus 319 ~v~~gfl~~~~-~~~~r~~~~~~~~ii~aliv~~~~g~~~p~~liv~aQv----~~~l~LP~~~ 377 (390)
T TIGR01197 319 FVMEGFLNWRW-SPWLRRLITRAIAIIPCLLVAAFGGREGLTGALNASQV----VLSLLLPFAL 377 (390)
T ss_pred HHHHHHcCCCC-cHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH----HHHHHHHHHH
Confidence 35677776433 344455566665666666666553 344445544443 4456666644
No 91
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=61.80 E-value=2.2e+02 Score=30.17 Aligned_cols=37 Identities=3% Similarity=0.075 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhc-CceehhhhhhhccCCccchHHH
Q 011966 231 VLYFTGATNILYTFG-GHAVTVEIMHAMWKPQKFKSIY 267 (474)
Q Consensus 231 ~~~~~~~~i~~faf~-~h~~~~~i~~~mk~p~~~~~~~ 267 (474)
.-+..+++-..|+.+ |.+.+...-..+|+.++..+..
T Consensus 249 ~vW~~A~~Q~ffsl~ig~G~~it~~Sy~~~~~n~~~~a 286 (523)
T PF00209_consen 249 KVWIAALGQVFFSLSIGFGIMITYGSYNKFKNNIFRDA 286 (523)
T ss_dssp HHHHHHHHHHHHHTTTTSSHHHHHHTTS-TTS-SHHHH
T ss_pred HHHHHHHHHHhhccCCCcceEEEEcCcCCCCccccccc
Confidence 445678899999986 5677777777777777764433
No 92
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=56.96 E-value=2.6e+02 Score=29.44 Aligned_cols=43 Identities=9% Similarity=-0.114 Sum_probs=24.2
Q ss_pred eehhhhhhhccCCccchHHHHHHHHHHHH-HHHhhHhHHHHhhc
Q 011966 248 AVTVEIMHAMWKPQKFKSIYLLATLYVFT-LTIPSAAAVYWAFG 290 (474)
Q Consensus 248 ~~~~~i~~~mk~p~~~~~~~~~s~~~~~~-~y~~~gi~Gy~~fG 290 (474)
+.+--....+.+-|..|..+...+....+ ..+-++++|-.+-.
T Consensus 317 PfvG~FiArISkGRTIRE~il~~~~~psl~~~~wf~ifGg~al~ 360 (485)
T PF02028_consen 317 PFVGLFIARISKGRTIREFILGVLLVPSLFCFLWFSIFGGYALY 360 (485)
T ss_dssp HHHHHHHHHCTTTSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCcCHHHHHHHHHHhhHHHHHHHHHHHCchHHh
Confidence 34444456777777776666554444443 34556666655543
No 93
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=55.77 E-value=15 Score=38.91 Aligned_cols=42 Identities=12% Similarity=0.152 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 011966 48 DAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTA 92 (474)
Q Consensus 48 ~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~ 92 (474)
....|+...|+ .|=++|...|+|+..|++++.+...++..|+
T Consensus 39 ~cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~ 80 (643)
T KOG2083|consen 39 RCMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITV 80 (643)
T ss_pred hhhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHH
Confidence 45556655443 4778999999999999999888877777775
No 94
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=49.84 E-value=2.3e+02 Score=29.31 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=49.6
Q ss_pred cHHHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhccc
Q 011966 119 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFI 185 (474)
Q Consensus 119 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~ 185 (474)
-..+++++.+|+.|..+..+...+-++-+++.-...++|.++...+..+++.|.++..++.+.++.+
T Consensus 262 lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kisY~~~v~i~~i~S~~ian~ 328 (427)
T PF05525_consen 262 LLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKISYKVWVIIFTIFSFIIANL 328 (427)
T ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHh
Confidence 3667888999999999888887777777777777777776655444677788888777666655543
No 95
>PRK09928 choline transport protein BetT; Provisional
Probab=46.45 E-value=4.4e+02 Score=29.01 Aligned_cols=29 Identities=14% Similarity=0.000 Sum_probs=17.0
Q ss_pred HHHHHHhhcCccchhhhHhhHHHHHHHHH
Q 011966 120 WFEVLDGLLGPYWKAVGLAFNCTFLLFGS 148 (474)
Q Consensus 120 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~ 148 (474)
|+-++++.-|+.|+.+=.+..+...+|.+
T Consensus 181 ~pllG~ri~G~~G~~IDi~av~~tvfGia 209 (679)
T PRK09928 181 YPIFGKRINGPIGHSVDIAAVIGTIFGIA 209 (679)
T ss_pred hhhcCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 55566666677776655555555555554
No 96
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=45.26 E-value=3.6e+02 Score=27.92 Aligned_cols=134 Identities=17% Similarity=0.049 Sum_probs=65.6
Q ss_pred hccCCccchHHHHHHHHHHHHHHHhhHhHHHHhhccccccccccccCCCC-chHHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 011966 256 AMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLLPR-SRWRDVAVILMLIHQFITFGFACTPLYFV 334 (474)
Q Consensus 256 ~mk~p~~~~~~~~~s~~~~~~~y~~~gi~Gy~~fG~~~~~~~~il~~l~~-~~~~~i~~i~~~i~l~~s~pl~~~p~~~~ 334 (474)
.-||+++.+++...+..+..++-+.+++.+++. ..+++..+.. ++....+.--+-+......+....-....
T Consensus 85 Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~ 157 (455)
T COG0534 85 GAGDRKKAKRVLGQGLLLALLLGLLLAILLLFF-------AEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSG 157 (455)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666778888777777777666666666554 2344555543 22333333333333333233322222222
Q ss_pred HHHHHcCCCCccchhhhhhhHhHHHHHHHHH-HhcCC-chhHHHhhhhHHHhhHHHhhhHHHHHHHhcch
Q 011966 335 WEKVVGMHDTKSICLRALARLPVVIPIWFLA-IIFPF-FGPINSAVGALLVSFTVYIIPALAHMLTYRSA 402 (474)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~r~~~v~~~~~iA-~~ip~-~~~i~~lvGa~~~~~l~filP~l~~l~~~~~~ 402 (474)
+.+-.+ +.+.. ..+...-.+...++. +++-. ++- +++.||-..+.+...+..++.+....++
T Consensus 158 ~lr~~G--~~~~~---m~~~~~~~~lNivln~llI~g~~g~-lGv~GAA~AT~ia~~~~~~~~~~~~~~~ 221 (455)
T COG0534 158 ILRGLG--DTKTP---MYILLLGNLLNIVLNYLLIFGLFGG-LGVAGAALATVIARWIGALLLLIYLLRK 221 (455)
T ss_pred HHHhcC--CCchh---HHHHHHHHHHHHHhhHHHHHhcccc-ccchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222222 11111 111111111111111 11111 344 9999999999999999887776665443
No 97
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=37.96 E-value=92 Score=24.09 Aligned_cols=54 Identities=7% Similarity=0.071 Sum_probs=34.7
Q ss_pred HHHHHHHhcCceehhhhhhhccCCccc--hHHHHHHHHHHHHHHHhhHhHHHHhhcccc
Q 011966 237 ATNILYTFGGHAVTVEIMHAMWKPQKF--KSIYLLATLYVFTLTIPSAAAVYWAFGDQL 293 (474)
Q Consensus 237 ~~i~~faf~~h~~~~~i~~~mk~p~~~--~~~~~~s~~~~~~~y~~~gi~Gy~~fG~~~ 293 (474)
.|++..+-.|...+.+..+.-.+|.+. +....++++ +-.-+..|++.|-.|| ..
T Consensus 17 ~GIiLL~~ACIFAfidFSK~~s~~~~~~wRalSii~FI--lG~vl~lGilifs~y~-~C 72 (91)
T PHA02680 17 CGVLLLTAACVFAFVDFSKNTSNVTDYVWRALSVTCFI--VGAVLLLGLFVFSMYR-KC 72 (91)
T ss_pred HHHHHHHHHHHHhhhhhhccCCCCcchhHHHHHHHHHH--HHHHHHHHHHHHHHhc-cc
Confidence 466666666777777887766566554 433333333 3334678899999999 55
No 98
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=33.26 E-value=4.3e+02 Score=27.37 Aligned_cols=132 Identities=20% Similarity=0.158 Sum_probs=57.3
Q ss_pred cCCccchHHHHHHHHHHHHHHHhhHhHHHHhhccccccccccccCCCC-chHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 011966 258 WKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQLLTHSNAFSLLPR-SRWRDVAVILMLIHQFITFGFACTPLYFVWE 336 (474)
Q Consensus 258 k~p~~~~~~~~~s~~~~~~~y~~~gi~Gy~~fG~~~~~~~~il~~l~~-~~~~~i~~i~~~i~l~~s~pl~~~p~~~~~~ 336 (474)
|++++-++....+..+.+.+-..+++.- ..|++.. ..-+.+ ++....+.-.+.+..+. +|. ........
T Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~-~~f~~~i------~~lF~~~~~v~~~~~~~l~i~~~~-~~~--~~~~~v~~ 380 (455)
T COG0534 311 GNYKRARRAARLALKLSLLIALLIALLL-LLFREPI------ISLFTTDPEVIALAVILLLIAALF-QPF--DGIQFVLS 380 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH------HHHHCCCHHHHHHHHHHHHHHHHH-HHH--HHHHHHHH
Confidence 5566667777676666665554444433 3344443 222222 23333333333222222 221 12233333
Q ss_pred HHHcCCCCccchhhhhhhHhHHHHHHHHHHhcCCchhHHHhhhhHHHhhHHHhhhHHHHHHHhcch
Q 011966 337 KVVGMHDTKSICLRALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHMLTYRSA 402 (474)
Q Consensus 337 ~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~~ip~~~~i~~lvGa~~~~~l~filP~l~~l~~~~~~ 402 (474)
..++- ..+.+...+..-......-.-++...+... ++..|--.+.....++-.++.....+++
T Consensus 381 g~lrg-~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~--~g~~Gvw~~~~~~~~~~~~~~~~~~~~~ 443 (455)
T COG0534 381 GVLRG-AGDAKIPFIISLLSYWGFRLPLAYLLGFFF--LGLAGVWIGFPLSLILRAILLLLRLRRG 443 (455)
T ss_pred HHHHh-cCCcHHHHHHHHHHHHHHHHhHHHHHhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33321 112222233222222222233333334332 6777777776777777666665555444
No 99
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=32.10 E-value=5.2e+02 Score=25.68 Aligned_cols=30 Identities=20% Similarity=0.095 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHhhHhHHHHhhcccc
Q 011966 264 KSIYLLATLYVFTLTIPSAAAVYWAFGDQL 293 (474)
Q Consensus 264 ~~~~~~s~~~~~~~y~~~gi~Gy~~fG~~~ 293 (474)
.+++..+...+...-+.+...||.......
T Consensus 47 ~~al~~tll~alp~pl~~~~~g~~L~~~~~ 76 (340)
T PF12794_consen 47 PRALLLTLLLALPLPLLLLAIGYLLQFAAW 76 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456667777777777778888888875543
No 100
>PHA03048 IMV membrane protein; Provisional
Probab=31.89 E-value=1.1e+02 Score=23.71 Aligned_cols=55 Identities=11% Similarity=0.102 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCceehhhhhhhccCCcc-chHHHHHHHHHHHHHHHhhHhHHHHhhcccc
Q 011966 236 GATNILYTFGGHAVTVEIMHAMWKPQK-FKSIYLLATLYVFTLTIPSAAAVYWAFGDQL 293 (474)
Q Consensus 236 ~~~i~~faf~~h~~~~~i~~~mk~p~~-~~~~~~~s~~~~~~~y~~~gi~Gy~~fG~~~ 293 (474)
..|++..+-.|...+.+..++ |++.. |+....++++ +-.-+.+|++-|..||...
T Consensus 16 i~GIiLL~~aCIfAfidfsK~-k~~~~~wRalsii~FI--lgivl~lG~~ifsmy~r~C 71 (93)
T PHA03048 16 IGGIILLAASCIFAFVDFSKN-KATVTVWRALSGIAFV--LGIVMTIGMLIYSMWGRYC 71 (93)
T ss_pred HHHHHHHHHHHHHhhhhhhcC-CCcchhHHHHHHHHHH--HHHHHHHHHHHHHHHhccc
Confidence 356777777777777888887 44332 3333333333 3334678999999999877
No 101
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=31.67 E-value=1.4e+02 Score=29.55 Aligned_cols=89 Identities=13% Similarity=0.137 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhcC--ceehhhhhh----------hccCCccchHHHHHHHHHH----HHH--HHhhHhHHHHhhccc
Q 011966 231 VLYFTGATNILYTFGG--HAVTVEIMH----------AMWKPQKFKSIYLLATLYV----FTL--TIPSAAAVYWAFGDQ 292 (474)
Q Consensus 231 ~~~~~~~~i~~faf~~--h~~~~~i~~----------~mk~p~~~~~~~~~s~~~~----~~~--y~~~gi~Gy~~fG~~ 292 (474)
++.+..+.+.+|+|.. -...|++.+ .|+++++-.+.-.+.+-++ +.+ =...-+.|.+.||+-
T Consensus 145 p~LlgpIaVaAYsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~ekiiFpivv~~~~~ll~P~a~pLig~Lm~Gnl 224 (360)
T PF03977_consen 145 PHLLGPIAVAAYSYMALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKTEKIIFPIVVTILVGLLLPSAAPLIGMLMFGNL 224 (360)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 4677788888999864 235566666 5555554432222222211 111 234678999999998
Q ss_pred cccccccccCCCC---chHHHHHHHHHHHHH
Q 011966 293 LLTHSNAFSLLPR---SRWRDVAVILMLIHQ 320 (474)
Q Consensus 293 ~~~~~~il~~l~~---~~~~~i~~i~~~i~l 320 (474)
.. ++.+.+.+.+ +.+..++.++..+.+
T Consensus 225 ~r-Esgv~~rLs~taqn~l~nivTi~LGl~v 254 (360)
T PF03977_consen 225 LR-ESGVVERLSKTAQNELMNIVTIFLGLTV 254 (360)
T ss_pred HH-HhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86 3556666642 344455555554443
No 102
>PRK01844 hypothetical protein; Provisional
Probab=31.02 E-value=1.2e+02 Score=22.63 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 011966 427 TFILVWVLVVGFGLGGWASMTNFIKQVDT 455 (474)
Q Consensus 427 ~~li~~~g~~~~v~Gt~~si~~ii~~~~~ 455 (474)
+++++++.++|++.|.+.+-+.+-++..+
T Consensus 7 I~l~I~~li~G~~~Gff~ark~~~k~lk~ 35 (72)
T PRK01844 7 ILVGVVALVAGVALGFFIARKYMMNYLQK 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444567788888999888877666543
No 103
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=29.69 E-value=4.4e+02 Score=27.06 Aligned_cols=125 Identities=15% Similarity=0.076 Sum_probs=0.0
Q ss_pred hHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHHHhhcCccchhhhHhhHHHHH
Q 011966 65 LPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFL 144 (474)
Q Consensus 65 LP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~ 144 (474)
.....-.+|++.++.+.++-..+.+.. ........ ..+++..-..+..++.||+.|..+.-.+...-+
T Consensus 222 ~~~~~~~aglIa~i~La~iY~~L~ylG----a~s~~~~~--------~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lAC 289 (431)
T COG1114 222 IIKYTIKAGLIAAILLALIYLSLFYLG----ATSASAAG--------LAANGGQILSAYSQHLFGSYGSILLGLIVFLAC 289 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----cchHhhcc--------cccchHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcccCCCCCchHHHHHHHHHHHHH
Q 011966 145 LFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFLGLGMTTYT 205 (474)
Q Consensus 145 ~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~ 205 (474)
.-+++.-+..++|-+....+..+++.|..++.++.+.+.-+. +......++......
T Consensus 290 LTTaiGLi~a~aefF~~~~p~~SY~~~v~if~i~sflvan~G----L~~Ii~isvPvL~~i 346 (431)
T COG1114 290 LTTAVGLIVACAEFFSKLVPKLSYKTWVIIFTLISFLVANLG----LEQIIKISVPVLTAI 346 (431)
T ss_pred HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHH
No 104
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=29.35 E-value=76 Score=28.02 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=22.7
Q ss_pred HHHHHH-hhhhhhhchhHHHHHh-----cchhHHHHHHHHHHH
Q 011966 50 WFSCAS-NQVAQVLLTLPYSFSQ-----LGMLSGIILQIFYGI 86 (474)
Q Consensus 50 ~~~l~~-~~iG~GiLsLP~af~~-----~G~~~g~i~l~~~~~ 86 (474)
..+..+ +-+|.+.|..|++... .|-+.|++++.+.++
T Consensus 40 l~y~f~FT~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si 82 (173)
T PF11085_consen 40 LAYFFHFTEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSI 82 (173)
T ss_pred HHHHhcccccccChhhhhhhccchhhhhHHHHHHHHHHHHHHH
Confidence 344444 6799999999998643 344445544444333
No 105
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.79 E-value=1.5e+02 Score=22.03 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Q 011966 426 NTFILVWVLVVGFGLGGWASMTNFIKQVDT 455 (474)
Q Consensus 426 ~~~li~~~g~~~~v~Gt~~si~~ii~~~~~ 455 (474)
.+++++++.++|+..|.+-|.+++-++..+
T Consensus 6 ail~ivl~ll~G~~~G~fiark~~~k~lk~ 35 (71)
T COG3763 6 AILLIVLALLAGLIGGFFIARKQMKKQLKD 35 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555566777778999999988776654
No 106
>COG4709 Predicted membrane protein [Function unknown]
Probab=27.51 E-value=1.2e+02 Score=27.14 Aligned_cols=41 Identities=22% Similarity=0.248 Sum_probs=21.4
Q ss_pred CchHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHH
Q 011966 44 GSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWT 91 (474)
Q Consensus 44 ~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s 91 (474)
.++-+++.++. |.|+++.|... +...|++++++.-++..+|
T Consensus 76 ~n~~~aii~~~----~L~~~~v~i~L---pl~~~vi~~viailv~~lt 116 (195)
T COG4709 76 KNVRRAIIALI----GLGLLAVIIGL---PLLIGVILFVIAILVAALT 116 (195)
T ss_pred cchHHHHHHHH----HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 35556666654 56666666543 3344555555444444444
No 107
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=26.42 E-value=4.8e+02 Score=23.51 Aligned_cols=30 Identities=17% Similarity=0.493 Sum_probs=22.9
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011966 69 FSQLGMLSGIILQIFYGIMGSWTAYLISVL 98 (474)
Q Consensus 69 f~~~G~~~g~i~l~~~~~~s~~s~~ll~~~ 98 (474)
|+.---+.|++.+++.+++..++++++.+.
T Consensus 118 f~~nA~~~GlItlll~a~vgGfamy~my~y 147 (226)
T COG4858 118 FQKNAQVYGLITLLLTAVVGGFAMYIMYYY 147 (226)
T ss_pred HhcCCcchhHHHHHHHHHhhhHHHHHHHHH
Confidence 444456678999999999988888887654
No 108
>PRK09950 putative transporter; Provisional
Probab=26.29 E-value=8e+02 Score=25.99 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=13.0
Q ss_pred chHHHHHHHHHhhhhhhhch
Q 011966 45 SVYDAWFSCASNQVAQVLLT 64 (474)
Q Consensus 45 s~~~a~~~l~~~~iG~GiLs 64 (474)
|.++=+.-+..+-+|+|++-
T Consensus 85 S~~sW~aMlf~aG~G~gllf 104 (506)
T PRK09950 85 STLSWLFMFICAGLGSSTLY 104 (506)
T ss_pred cchhHHHHHHHHhhhhHHHH
Confidence 44555556777778888753
No 109
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=23.99 E-value=2.3e+02 Score=24.90 Aligned_cols=49 Identities=10% Similarity=0.081 Sum_probs=35.9
Q ss_pred hcCceehhhhhhhccCCccchHHHHHHHHHHHHHHHhhHhHHHHhhcccc
Q 011966 244 FGGHAVTVEIMHAMWKPQKFKSIYLLATLYVFTLTIPSAAAVYWAFGDQL 293 (474)
Q Consensus 244 f~~h~~~~~i~~~mk~p~~~~~~~~~s~~~~~~~y~~~gi~Gy~~fG~~~ 293 (474)
+-..+..+.-|+++|+|+=.+.-.....+. +++|+++|+.+|+++-...
T Consensus 24 ~~~~~~~~~wy~~L~kP~w~pp~~~f~~vW-tvLy~l~~iSa~lvW~~~~ 72 (161)
T COG3476 24 FFISSRDPNWYNNLKKPFWLPPEWAFPPVW-TVLYALIGISAYLVWEKGP 72 (161)
T ss_pred HHhccccHHHHHhccCCCCCChHHHhhHHH-HHHHHHHHHHHHHHHHHcC
Confidence 345577777999999998765444444443 3469999999999997665
No 110
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.92 E-value=4.1e+02 Score=21.78 Aligned_cols=65 Identities=9% Similarity=0.020 Sum_probs=39.3
Q ss_pred ccccccccccCCchHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHH-HHHHH
Q 011966 33 KFGLKSLLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTA-YLISV 97 (474)
Q Consensus 33 ~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~-~ll~~ 97 (474)
+.|.+.....|-|.-+-.....-+....-++++|.+.-..+|..+....++..+++..-+ ..+.+
T Consensus 7 RLN~ePvV~rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~r 72 (111)
T TIGR03750 7 RLNREPVVFRGLTADELGVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLAR 72 (111)
T ss_pred hhcCCCceecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344445566776655544544445444467889988777788877666666555544443 44443
No 111
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=22.86 E-value=1.7e+02 Score=30.35 Aligned_cols=106 Identities=16% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHHHHhhcCccchhhhHhhHHHHHHH
Q 011966 67 YSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLF 146 (474)
Q Consensus 67 ~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g 146 (474)
....++|.+.++.+.++=+.+.+....--...- +..++.+- .....++.+|+.++.+..+....-++-
T Consensus 226 k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~-~~~~g~~i-----------l~~~~~~~~G~~G~~ll~iiv~lACLT 293 (439)
T PRK15433 226 RYTVWAGLMAGVGLTLLYLALFRLGSDSASLVD-QSANGAAI-----------LHAYVQHTFGGGGSFLLAALIFIACLV 293 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-CCCcHhHH-----------HHHHHHHHhCHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhcccccccccccCcchhhhhhhHHHhhhccc
Q 011966 147 GSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFI 185 (474)
Q Consensus 147 ~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~ 185 (474)
+++.-...+++.+....+ .+++.|..+..++.++++.+
T Consensus 294 TaIGLi~a~a~~f~~~~~-isY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 294 TAVGLTCACAEFFAQYVP-LSYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred HHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHh
No 112
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=22.85 E-value=4.5e+02 Score=21.89 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=25.1
Q ss_pred HhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 011966 55 SNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYL 94 (474)
Q Consensus 55 ~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~l 94 (474)
-+.+|.+++..-- +.|-+.|.+..++.-+...|+..+
T Consensus 45 lg~l~~~l~n~~~---~~g~~~a~vftivaif~~~ya~~l 81 (126)
T COG5264 45 LGGLGFALYNSGD---RLGMISAYVFTIVAIFCGFYALML 81 (126)
T ss_pred HHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666655 778777777777766777777543
No 113
>PRK00523 hypothetical protein; Provisional
Probab=22.85 E-value=2.1e+02 Score=21.43 Aligned_cols=30 Identities=27% Similarity=0.247 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Q 011966 425 VNTFILVWVLVVGFGLGGWASMTNFIKQVD 454 (474)
Q Consensus 425 ~~~~li~~~g~~~~v~Gt~~si~~ii~~~~ 454 (474)
+.+.+++++.++|.+.|.+.+-+.+-++..
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444546778888899988888776654
No 114
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=22.48 E-value=3e+02 Score=20.92 Aligned_cols=15 Identities=27% Similarity=0.135 Sum_probs=6.4
Q ss_pred hhhhhhhchhHHHHH
Q 011966 56 NQVAQVLLTLPYSFS 70 (474)
Q Consensus 56 ~~iG~GiLsLP~af~ 70 (474)
..+|...|..-....
T Consensus 49 ~v~gl~llv~G~~~~ 63 (82)
T PF11239_consen 49 VVVGLALLVAGVVLS 63 (82)
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444444433333
No 115
>PRK10263 DNA translocase FtsK; Provisional
Probab=21.10 E-value=1.5e+03 Score=27.25 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=11.5
Q ss_pred HHHHHHHHhhHhHHHHh
Q 011966 272 LYVFTLTIPSAAAVYWA 288 (474)
Q Consensus 272 ~~~~~~y~~~gi~Gy~~ 288 (474)
++.+.+|++++++.|-.
T Consensus 30 LlllAlfL~lALiSYsP 46 (1355)
T PRK10263 30 IVLFAVWLMAALLSFNP 46 (1355)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 34445688888877765
No 116
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=20.90 E-value=1.8e+02 Score=28.68 Aligned_cols=87 Identities=15% Similarity=0.217 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhcC--ceehhhhhh----------hccCCccc---hHHH-HHHHHHHHHH--HHhhHhHHHHhhccc
Q 011966 231 VLYFTGATNILYTFGG--HAVTVEIMH----------AMWKPQKF---KSIY-LLATLYVFTL--TIPSAAAVYWAFGDQ 292 (474)
Q Consensus 231 ~~~~~~~~i~~faf~~--h~~~~~i~~----------~mk~p~~~---~~~~-~~s~~~~~~~--y~~~gi~Gy~~fG~~ 292 (474)
++.+..+.+.+|+|.. -..-|++.+ .|+++++. .|.. -+..++.+.+ =...-+.|.+.||+-
T Consensus 145 p~Llg~IaVAAYsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~eKi~Fpivv~~i~~ll~P~a~pLig~Lm~Gnl 224 (354)
T TIGR01109 145 PELLAAIAVAAYSYMALVPIIQPPIMKALTSEKERKIRMKQLRTVSKREKILFPIVLLLLVALLIPKALPLVGMLMFGNL 224 (354)
T ss_pred hHHHHHHHHHHHHHHHHHhcccchHHHhhcChHHhccccCCCCCcCccchhHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 5677788888999864 234566665 45444332 2222 1222222222 234678999999998
Q ss_pred cccccccccCCCC---chHHHHHHHHHHH
Q 011966 293 LLTHSNAFSLLPR---SRWRDVAVILMLI 318 (474)
Q Consensus 293 ~~~~~~il~~l~~---~~~~~i~~i~~~i 318 (474)
.. ++.+.+.+.+ +.+..++.++..+
T Consensus 225 lr-EsGv~~rl~~taqn~l~nivTifLGl 252 (354)
T TIGR01109 225 MR-ESGVVERLSKTASNELLNIVTILLGL 252 (354)
T ss_pred HH-HhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 3555666653 3344445544443
No 117
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=20.60 E-value=1.6e+02 Score=27.54 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCchhHHHhh---------hhHHHhhHHHhhhHHHHHHHhcchhhhccccCCCCcccccchhhHHHHH
Q 011966 357 VVIPIWFLAIIFPFFGPINSAV---------GALLVSFTVYIIPALAHMLTYRSASARQNSAEKLPFFLPSWTAMYVVNT 427 (474)
Q Consensus 357 ~v~~~~~iA~~ip~~~~i~~lv---------Ga~~~~~l~filP~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (474)
..+.++++|..++.++-++.++ ||.++.-+.++= |..+.|... + ...+... .+|+.|
T Consensus 162 ~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd-~------f~~y~n~---q~wLww 227 (262)
T KOG4812|consen 162 IFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSD-D------FESYFNG---QYWLWW 227 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeeccc-c------ccccccc---chHHHH
Confidence 3344555666666655555443 677776666654 444444331 1 1111111 245556
Q ss_pred HHHHHHHHHHHhhhHH--HHHHHHHHhhc
Q 011966 428 FILVWVLVVGFGLGGW--ASMTNFIKQVD 454 (474)
Q Consensus 428 ~li~~~g~~~~v~Gt~--~si~~ii~~~~ 454 (474)
++++ .|++.+.-|++ ..|+.+=+.++
T Consensus 228 i~~v-lG~ll~lr~~i~YikVrrm~~~~s 255 (262)
T KOG4812|consen 228 IFLV-LGLLLFLRGFINYIKVRRMEEKYS 255 (262)
T ss_pred HHHH-HHHHHHHHHHHhHHHHhhHHHHHh
Confidence 6666 35444445554 45555544443
No 118
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=20.12 E-value=3.5e+02 Score=23.92 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=8.1
Q ss_pred hhhhhhhchhHHHH
Q 011966 56 NQVAQVLLTLPYSF 69 (474)
Q Consensus 56 ~~iG~GiLsLP~af 69 (474)
.++|.+++++|...
T Consensus 84 ~~i~l~~~~~~~vl 97 (181)
T PF08006_consen 84 AIIGLGLLSFIIVL 97 (181)
T ss_pred HHHHHHHHHHHHHH
Confidence 34566666666543
Done!