Query 011966
Match_columns 474
No_of_seqs 160 out of 1598
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 18:56:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.5 6.8E-11 2.3E-15 121.0 30.8 238 42-292 8-253 (445)
2 3gia_A Uncharacterized protein 99.2 2.7E-09 9.1E-14 109.1 24.5 235 42-290 6-248 (444)
3 4djk_A Probable glutamate/gamm 98.9 1.4E-06 4.8E-11 90.4 30.0 61 233-293 203-264 (511)
4 2jln_A MHP1; hydantoin, transp 98.3 9.8E-05 3.4E-09 76.3 22.1 142 119-262 89-239 (501)
5 3dh4_A Sodium/glucose cotransp 97.2 0.26 8.9E-06 50.9 27.6 138 45-197 23-162 (530)
6 2xq2_A Sodium/glucose cotransp 94.2 6.3 0.00022 41.0 27.5 138 45-197 52-191 (593)
7 2a65_A Leutaa, Na(+):neurotran 63.0 1.3E+02 0.0046 30.4 30.7 29 45-73 10-39 (519)
8 2wsw_A BCCT family betaine/car 32.9 3.9E+02 0.013 26.8 23.4 30 119-148 180-210 (509)
9 4b4a_A TATC, SEC-independent p 23.8 4E+02 0.014 23.9 12.6 95 305-399 58-175 (249)
10 4ain_A Glycine betaine transpo 12.6 1E+03 0.036 23.9 18.3 29 120-148 182-211 (539)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.46 E-value=6.8e-11 Score=120.96 Aligned_cols=238 Identities=10% Similarity=0.010 Sum_probs=134.2
Q ss_pred cCCchHHHHHHHHHhhhhhhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHH
Q 011966 42 HGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWF 121 (474)
Q Consensus 42 ~~~s~~~a~~~l~~~~iG~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~ 121 (474)
++-+.++.+...+.+++|+|++.+|....+.|.. +++..++.++..........+...++++. . ...
T Consensus 8 r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~~---------G---g~y 74 (445)
T 3l1l_A 8 HKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPSP---------G---GSY 74 (445)
T ss_dssp CCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCT---------T---THH
T ss_pred CcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCCC---------C---Cch
Confidence 3457889999999999999999999999888864 67777777777666665555443333211 0 244
Q ss_pred HHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhH-HHhh--hcccCCCCCchHHHHHH
Q 011966 122 EVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGA-CCAT--TVFIPSFHNYRLWSFLG 198 (474)
Q Consensus 122 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~-i~~p--l~~~~~l~~l~~~s~~~ 198 (474)
+..++.+||....+...............+....++.+....+..+......+.+. +++. ..-.+..+...++..+.
T Consensus 75 ~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~ 154 (445)
T 3l1l_A 75 AYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVA 154 (445)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hhHHhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 55677899988776655544443333333433333333222222222211111111 1111 11122333333333332
Q ss_pred HHHHHHHHHHhhhhhhhcCCCCCC----CcCCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCcc-chHHHHHHHHH
Q 011966 199 LGMTTYTAWYLTIAAFVHGQVDGV----THSGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKSIYLLATLY 273 (474)
Q Consensus 199 ~~~~~~~~~~i~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~-~~~~~~~s~~~ 273 (474)
....+...+.+++......+.++. +.....++.+++.++....|+|.|........+|+|||+| .++....+..+
T Consensus 155 ~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~ 234 (445)
T 3l1l_A 155 TVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLI 234 (445)
T ss_dssp HHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHH
Confidence 222221111122222222111111 1111123557788889999999999999999999999966 58889999999
Q ss_pred HHHHHHhhHhHHHHhhccc
Q 011966 274 VFTLTIPSAAAVYWAFGDQ 292 (474)
Q Consensus 274 ~~~~y~~~gi~Gy~~fG~~ 292 (474)
+.++|+...+......+.+
T Consensus 235 ~~~~y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 235 AAVCYVLSTTAIMGMIPNA 253 (445)
T ss_dssp HHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhcCCHH
Confidence 9999988877766666543
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.20 E-value=2.7e-09 Score=109.07 Aligned_cols=235 Identities=11% Similarity=0.030 Sum_probs=127.2
Q ss_pred cCCchHHHHHHHHHhhhhhhhchhH-HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccH
Q 011966 42 HGGSVYDAWFSCASNQVAQVLLTLP-YSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQW 120 (474)
Q Consensus 42 ~~~s~~~a~~~l~~~~iG~GiLsLP-~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y 120 (474)
+.-+.++.+...+++++|+|++..| .+.+.+|- ..++..++.+++.........+....++ +.. ..
T Consensus 6 r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P-----------~~G-g~ 72 (444)
T 3gia_A 6 KKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIV-----------SNA-GP 72 (444)
T ss_dssp CCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCC-----------CTT-TH
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCC-----------CCC-cH
Confidence 3457889999999999999999887 55666776 4666667777776666555554432222 111 24
Q ss_pred HHHHHhhcCccc--hhhhHhhHHHHHHHHHHHHHHhhcccccccccccCcchhhhhhhH-HHhh--hcccCCCCCchHHH
Q 011966 121 FEVLDGLLGPYW--KAVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGA-CCAT--TVFIPSFHNYRLWS 195 (474)
Q Consensus 121 ~~l~~~~~G~~~--~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~-i~~p--l~~~~~l~~l~~~s 195 (474)
.+..++.+||++ .++. ....+........+....++.+....+..+...+..+.+. +.+. ..-.+..+...++.
T Consensus 73 y~~~~~~~G~~~~~g~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~ 151 (444)
T 3gia_A 73 IAFIHKAIGDNIITGALS-ILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAE 151 (444)
T ss_dssp HHHHHHHHCSSHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHhHHHHhCcchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 456677799863 2221 1111111111222222233322222222222223222221 1111 12222333333333
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCCCCCCc-CCCchHHHHHHHHHHHHHHhcCceehhhhhhhccCCcc-chHHHHHHHHH
Q 011966 196 FLGLGMTTYTAWYLTIAAFVHGQVDGVTH-SGPSTLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKSIYLLATLY 273 (474)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~i~~faf~~h~~~~~i~~~mk~p~~-~~~~~~~s~~~ 273 (474)
.+.....+...+.+++..+...++++... ..+.++.+++.++....|+|.|........+|+|||+| .++....+..+
T Consensus 152 ~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~ 231 (444)
T 3gia_A 152 FFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILI 231 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHH
Confidence 33222222111112222222222222221 22345567888888889999999999999999999977 68899999999
Q ss_pred HHHHHHhhHhHHHHhhc
Q 011966 274 VFTLTIPSAAAVYWAFG 290 (474)
Q Consensus 274 ~~~~y~~~gi~Gy~~fG 290 (474)
+.++|+...+......+
T Consensus 232 ~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 232 VMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999887766555544
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.89 E-value=1.4e-06 Score=90.44 Aligned_cols=61 Identities=10% Similarity=0.149 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhcCceehhhhhhhccCCcc-chHHHHHHHHHHHHHHHhhHhHHHHhhcccc
Q 011966 233 YFTGATNILYTFGGHAVTVEIMHAMWKPQK-FKSIYLLATLYVFTLTIPSAAAVYWAFGDQL 293 (474)
Q Consensus 233 ~~~~~~i~~faf~~h~~~~~i~~~mk~p~~-~~~~~~~s~~~~~~~y~~~gi~Gy~~fG~~~ 293 (474)
.+.++...+|+|.|.......-+|+|||+| .++....++.++.++|+...+.-....+++.
T Consensus 203 ~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~ 264 (511)
T 4djk_A 203 TLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNE 264 (511)
T ss_dssp TTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhh
Confidence 334567789999999999999999999987 5899999999999999988877666665543
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.26 E-value=9.8e-05 Score=76.30 Aligned_cols=142 Identities=13% Similarity=0.080 Sum_probs=74.0
Q ss_pred cHHHHHHhhcCccchhhhHhhHHHHHHHHHHHHHHhhccccccccc---ccC-cchhhhhhhHHHhhhcccCCCCCchHH
Q 011966 119 QWFEVLDGLLGPYWKAVGLAFNCTFLLFGSVIQLIACASNIYYIND---NLD-KRTWTYIFGACCATTVFIPSFHNYRLW 194 (474)
Q Consensus 119 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~yli~~~~~~~~~~~---~~~-~~~~~~i~~~i~~pl~~~~~l~~l~~~ 194 (474)
++.++.|..||+++..+..+...+..+|-........++.+..... +.+ ...+.+++.++.+++.+. -++.++++
T Consensus 89 ~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~~-G~~~i~~~ 167 (501)
T 2jln_A 89 NFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFY-GITFIRWM 167 (501)
T ss_dssp CHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh-CHHHHHHH
Confidence 5888999999999998877777766666655555555544432211 233 234556666677776643 35666666
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCC--CC-CCcCCCchHHHHHHHHHHHHHHh--cCceehhhhhhhccCCcc
Q 011966 195 SFLGLGMTTYTAWYLTIAAFVHGQV--DG-VTHSGPSTLVLYFTGATNILYTF--GGHAVTVEIMHAMWKPQK 262 (474)
Q Consensus 195 s~~~~~~~~~~~~~i~~~~~~~g~~--~~-~~~~~~~~~~~~~~~~~i~~faf--~~h~~~~~i~~~mk~p~~ 262 (474)
..+....++...+++.+..+.+... ++ .+..+......++.++.. +.++ ....+.++..+.+|++++
T Consensus 168 ~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~-~~~~~~~~~~~~~DysRy~~~~~~ 239 (501)
T 2jln_A 168 NVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMI-FVGGWIAVVVSIHDIVKECKVDPN 239 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHH-HHTTTHHHHTTTHHHHTTBCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHH-HHHHHHHHHhccCcccccCCCCcc
Confidence 6655444333222222222221111 00 011111111123332222 1222 233678899999998877
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=97.16 E-value=0.26 Score=50.91 Aligned_cols=138 Identities=6% Similarity=-0.057 Sum_probs=61.4
Q ss_pred chHHHHHHHHHhhhhh-hhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHH
Q 011966 45 SVYDAWFSCASNQVAQ-VLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 123 (474)
Q Consensus 45 s~~~a~~~l~~~~iG~-GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 123 (474)
+.+...+.+..+.+++ ..+++|-.....|+........ .++.....++.+.. .+++. +..|..|.
T Consensus 23 ~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~-~~~~~~i~~~~~~p---~~~~~----------~~~T~~e~ 88 (530)
T 3dh4_A 23 PWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLP---IFIEK----------GIYTIPEF 88 (530)
T ss_dssp CHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHH-HHHHHHHHHHHTHH---HHHHT----------TCCSHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHH---HHHHc----------CCccHHHH
Confidence 5666667776666554 5688998888888753221111 11110111222121 22211 12378887
Q ss_pred HHhhcCccchhhhHhhHHH-HHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcccCCCCCchHHHHH
Q 011966 124 LDGLLGPYWKAVGLAFNCT-FLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFL 197 (474)
Q Consensus 124 ~~~~~G~~~~~~~~~~~~~-~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 197 (474)
-++-||++.+.+..++..+ +.+.-....+...+..+.. ..+++....+++.++++..-+.+.-++...+.-.+
T Consensus 89 l~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~-~~Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~i 162 (530)
T 3dh4_A 89 VEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALET-ILGIPLMYSILGLALFALVYSIYGGLSAVVWTDVI 162 (530)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHTTC------CCSHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 7777899877665544332 2221111111111211111 12344444445555555555666666665555444
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=94.16 E-value=6.3 Score=41.04 Aligned_cols=138 Identities=7% Similarity=-0.036 Sum_probs=60.0
Q ss_pred chHHHHHHHHHhhhh-hhhchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccccHHHH
Q 011966 45 SVYDAWFSCASNQVA-QVLLTLPYSFSQLGMLSGIILQIFYGIMGSWTAYLISVLYVEYRSRKEKENVSFKNHVIQWFEV 123 (474)
Q Consensus 45 s~~~a~~~l~~~~iG-~GiLsLP~af~~~G~~~g~i~l~~~~~~s~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~y~~l 123 (474)
+.+...+.+..+.++ ...+++|-.-.+.|+........ .++.....++.+.. .+++. +..|..|.
T Consensus 52 ~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p---~~~r~----------~~~T~~e~ 117 (593)
T 2xq2_A 52 PWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLP---IFIEK----------GIYTIPEF 117 (593)
T ss_dssp CHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHH---HHHHT----------TCCSHHHH
T ss_pred CHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHH---HHHhC----------CCCCcHHH
Confidence 456666667655554 44578887777788642211111 01100111121111 22111 12367887
Q ss_pred HHhhcCccchhhhHhhHHH-HHHHHHHHHHHhhcccccccccccCcchhhhhhhHHHhhhcccCCCCCchHHHHH
Q 011966 124 LDGLLGPYWKAVGLAFNCT-FLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRLWSFL 197 (474)
Q Consensus 124 ~~~~~G~~~~~~~~~~~~~-~~~g~~~~yli~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 197 (474)
-++-||++.+.+..++..+ +.+......+...+..+... .+++.....++.++++..-+.+--++...+.-.+
T Consensus 118 l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~-~Gi~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~i 191 (593)
T 2xq2_A 118 VEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETI-LGIPLMYSILGLALFALVYSIYGGLSAVVWTDVI 191 (593)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHTTC---CCHHHHH
T ss_pred HHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 6666898877655443322 22211111111122222111 2334333444455555555666666665555444
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=63.02 E-value=1.3e+02 Score=30.37 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=24.8
Q ss_pred chHHHHHHHHHhhhhhh-hchhHHHHHhcc
Q 011966 45 SVYDAWFSCASNQVAQV-LLTLPYSFSQLG 73 (474)
Q Consensus 45 s~~~a~~~l~~~~iG~G-iLsLP~af~~~G 73 (474)
|.++-++..+.+.+|.| +.=.||-..+-|
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nG 39 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENG 39 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcC
Confidence 56777888999999999 789999888777
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=32.89 E-value=3.9e+02 Score=26.82 Aligned_cols=30 Identities=13% Similarity=-0.042 Sum_probs=19.8
Q ss_pred cHHHHH-HhhcCccchhhhHhhHHHHHHHHH
Q 011966 119 QWFEVL-DGLLGPYWKAVGLAFNCTFLLFGS 148 (474)
Q Consensus 119 ~y~~l~-~~~~G~~~~~~~~~~~~~~~~g~~ 148 (474)
-|+-++ ++..|+.|+.+=....+..++|.+
T Consensus 180 l~PllG~~r~~G~~G~~IDilav~at~~G~a 210 (509)
T 2wsw_A 180 LVPLVGEKHVNGLFGTVVDNFYLVALILAMG 210 (509)
T ss_dssp CHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhcCCcccCCchhhhhHHHHHHHHHHHHH
Confidence 377788 788888887655555555555554
No 9
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=23.85 E-value=4e+02 Score=23.90 Aligned_cols=95 Identities=13% Similarity=0.036 Sum_probs=53.5
Q ss_pred CchHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHcCCCCccchhhhhhhHhHHHHHHHHHHh-----------------
Q 011966 305 RSRWRDVAVILMLIHQFITFGFACTPLYFVWEKVVGMHDTKSICLRALARLPVVIPIWFLAII----------------- 367 (474)
Q Consensus 305 ~~~~~~i~~i~~~i~l~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~iA~~----------------- 367 (474)
.+.+..-.++.....++.+.|....-+...+..-+..+|++....-......+...-...+..
T Consensus 58 ~e~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~~~~~ 137 (249)
T 4b4a_A 58 TEPLFILIKISLAVGFIIASPVILYQFWRFIEPALYSHEKRAFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGLGFTQ 137 (249)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTCSSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 456667788888999999999877655544444443344322222222233333332223321
Q ss_pred ---cC--CchhHHHhhhhHH-HhhHHHhhhHHHHHHHh
Q 011966 368 ---FP--FFGPINSAVGALL-VSFTVYIIPALAHMLTY 399 (474)
Q Consensus 368 ---ip--~~~~i~~lvGa~~-~~~l~filP~l~~l~~~ 399 (474)
.| ++++-++++-.+. ...++|-+|.++.+-.+
T Consensus 138 i~~~~~~~i~~Yl~fv~~l~l~fGl~FelPvi~~~L~~ 175 (249)
T 4b4a_A 138 LLATPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVLQK 175 (249)
T ss_dssp SSSSTTEEHHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred hHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14 5555555554433 34578889998887654
No 10
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=12.60 E-value=1e+03 Score=23.90 Aligned_cols=29 Identities=7% Similarity=-0.200 Sum_probs=18.4
Q ss_pred HHHHHHh-hcCccchhhhHhhHHHHHHHHH
Q 011966 120 WFEVLDG-LLGPYWKAVGLAFNCTFLLFGS 148 (474)
Q Consensus 120 y~~l~~~-~~G~~~~~~~~~~~~~~~~g~~ 148 (474)
|+-++++ ..|+.|+.+=....+...+|.+
T Consensus 182 ~PllG~r~~~G~~G~~IDilav~atv~Gva 211 (539)
T 4ain_A 182 VPLIGEKGAEGWLGKLIDILAIIATVFGTA 211 (539)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCccCCcchhhhHHHHHHHHHHHHh
Confidence 6777877 7788776554444455555554
Done!