Query 011966
Match_columns 474
No_of_seqs 160 out of 1598
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 18:57:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011966.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011966hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 66.9 52 0.0038 30.7 35.4 35 231-265 238-273 (509)
2 d2axtm1 f.23.35.1 (M:1-36) Pho 9.0 1.7E+02 0.012 16.1 3.2 22 384-405 11-32 (36)
3 d1bhia_ g.37.1.1 (A:) Transact 4.4 1.2E+02 0.0091 17.1 0.8 11 462-472 6-16 (38)
4 d1oedc_ f.36.1.1 (C:) Acetylch 4.1 3.8E+02 0.028 21.2 4.4 38 355-392 41-78 (260)
5 d1q90g_ f.23.26.1 (G:) PetG su 4.0 3.2E+02 0.023 14.1 2.3 15 72-86 7-21 (30)
6 d1dsqa_ g.40.1.1 (A:) Nucleic 3.7 1.3E+02 0.0095 14.9 0.4 7 460-466 3-9 (26)
7 d1q90r_ f.23.12.1 (R:) ISP sub 3.5 4.2E+02 0.031 14.8 2.8 18 378-395 18-35 (39)
8 d1r3jc_ f.14.1.1 (C:) Potassiu 3.3 6.4E+02 0.047 16.7 5.1 16 312-327 67-82 (103)
9 d1tocr2 g.8.1.2 (R:57-119) Orn 3.2 2.8E+02 0.021 16.7 1.7 17 457-473 4-20 (63)
10 d2e74f1 f.23.25.1 (F:1-32) Pet 3.1 3.8E+02 0.028 13.8 2.0 10 72-81 18-27 (32)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=66.86 E-value=52 Score=30.75 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhc-CceehhhhhhhccCCccchH
Q 011966 231 VLYFTGATNILYTFG-GHAVTVEIMHAMWKPQKFKS 265 (474)
Q Consensus 231 ~~~~~~~~i~~faf~-~h~~~~~i~~~mk~p~~~~~ 265 (474)
..+..+.+...|+++ |++.+...-..+|+.++..+
T Consensus 238 ~vW~~A~~Q~ffSlgiG~G~~i~~~Sy~~~~~n~~r 273 (509)
T d2a65a1 238 GVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVL 273 (509)
T ss_dssp HHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHH
T ss_pred HHHHHHHHHHhhhhcccCCceeeehhhccchhhhcc
Confidence 345678888999987 56777777777777666544
No 2
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.96 E-value=1.7e+02 Score=16.13 Aligned_cols=22 Identities=9% Similarity=0.342 Sum_probs=14.6
Q ss_pred hhHHHhhhHHHHHHHhcchhhh
Q 011966 384 SFTVYIIPALAHMLTYRSASAR 405 (474)
Q Consensus 384 ~~l~filP~l~~l~~~~~~~~~ 405 (474)
+.+..+.|..|.+.++-+..+|
T Consensus 11 t~LFilvPt~FLliLyvqT~s~ 32 (36)
T d2axtm1 11 TALFVLVPSVFLIILYVQTESQ 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhheeeccc
Confidence 3555667888888777665443
No 3
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.39 E-value=1.2e+02 Score=17.07 Aligned_cols=11 Identities=18% Similarity=0.637 Sum_probs=8.7
Q ss_pred ccCCCCCCCCC
Q 011966 462 CYQCPPPASAT 472 (474)
Q Consensus 462 ~~~~~~~~~~~ 472 (474)
.|.|.+|.|+-
T Consensus 6 PF~C~~pGC~q 16 (38)
T d1bhia_ 6 PFLCTAPGCGQ 16 (38)
T ss_dssp CEECCCTTTCC
T ss_pred ceecCCCCccc
Confidence 38999998863
No 4
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.13 E-value=3.8e+02 Score=21.25 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=23.0
Q ss_pred HhHHHHHHHHHHhcCCchhHHHhhhhHHHhhHHHhhhH
Q 011966 355 LPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPA 392 (474)
Q Consensus 355 ~~~v~~~~~iA~~ip~~~~i~~lvGa~~~~~l~filP~ 392 (474)
+.+.++...++-.+|..++-+-++|-.....+.++.=+
T Consensus 41 Ls~~vf~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~s 78 (260)
T d1oedc_ 41 LAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGV 78 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHH
Confidence 34445566677778877666666666555555554433
No 5
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.96 E-value=3.2e+02 Score=14.13 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=8.9
Q ss_pred cchhHHHHHHHHHHH
Q 011966 72 LGMLSGIILQIFYGI 86 (474)
Q Consensus 72 ~G~~~g~i~l~~~~~ 86 (474)
+|+++|.+=..+.++
T Consensus 7 ~GivlGlipiTl~Gl 21 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGL 21 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHH
Confidence 566667666555444
No 6
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=3.69 E-value=1.3e+02 Score=14.90 Aligned_cols=7 Identities=29% Similarity=1.203 Sum_probs=4.7
Q ss_pred ccccCCC
Q 011966 460 AKCYQCP 466 (474)
Q Consensus 460 ~~~~~~~ 466 (474)
+-||+|-
T Consensus 3 pvcfscg 9 (26)
T d1dsqa_ 3 PVCFSCG 9 (26)
T ss_dssp CBCTTTC
T ss_pred CEEEecC
Confidence 4588875
No 7
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.50 E-value=4.2e+02 Score=14.84 Aligned_cols=18 Identities=17% Similarity=0.065 Sum_probs=11.7
Q ss_pred hhhHHHhhHHHhhhHHHH
Q 011966 378 VGALLVSFTVYIIPALAH 395 (474)
Q Consensus 378 vGa~~~~~l~filP~l~~ 395 (474)
+|+++........|-..|
T Consensus 18 ~G~~~~~~~g~l~py~~f 35 (39)
T d1q90r_ 18 AGGAGLPITTLALGYGAF 35 (39)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhccchhhhhhccceeEE
Confidence 467777666666666554
No 8
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.34 E-value=6.4e+02 Score=16.68 Aligned_cols=16 Identities=0% Similarity=-0.135 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhhhhh
Q 011966 312 AVILMLIHQFITFGFA 327 (474)
Q Consensus 312 ~~i~~~i~l~~s~pl~ 327 (474)
.|++..+..+....+.
T Consensus 67 gr~~~~~~~~~Gi~~~ 82 (103)
T d1r3jc_ 67 GRCVAVVVMVAGITSF 82 (103)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 9
>d1tocr2 g.8.1.2 (R:57-119) Ornithodorin {Soft tick (Ornithodoros moubata) [TaxId: 6938]}
Probab=3.19 E-value=2.8e+02 Score=16.71 Aligned_cols=17 Identities=24% Similarity=0.583 Sum_probs=12.8
Q ss_pred cccccccCCCCCCCCCC
Q 011966 457 GLFAKCYQCPPPASATA 473 (474)
Q Consensus 457 ~~~~~~~~~~~~~~~~~ 473 (474)
.+-.+|+..|+.+|++.
T Consensus 4 ~~~ssc~g~pptsc~~g 20 (63)
T d1tocr2 4 EMHSSCLGDPPTSCAEG 20 (63)
T ss_dssp CCCGGGGSCCCBCCTTC
T ss_pred ccchhhcCCCCcccccC
Confidence 34578999999888763
No 10
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.10 E-value=3.8e+02 Score=13.83 Aligned_cols=10 Identities=30% Similarity=0.527 Sum_probs=5.8
Q ss_pred cchhHHHHHH
Q 011966 72 LGMLSGIILQ 81 (474)
Q Consensus 72 ~G~~~g~i~l 81 (474)
.||.+|.+++
T Consensus 18 vgwglgalll 27 (32)
T d2e74f1 18 VGWGLGVLLL 27 (32)
T ss_dssp HHHHHHHHHH
T ss_pred HHhHHHHHHh
Confidence 4666666554
Done!