Query 011969
Match_columns 474
No_of_seqs 159 out of 1920
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:13:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2941 Beta-1,4-mannosyltrans 100.0 3.1E-67 6.8E-72 515.1 40.3 431 1-467 9-442 (444)
2 cd03816 GT1_ALG1_like This fam 100.0 8.6E-48 1.9E-52 403.7 44.5 411 2-464 1-414 (415)
3 PLN02275 transferase, transfer 100.0 6.2E-46 1.3E-50 383.9 40.6 371 1-427 1-371 (371)
4 PRK10307 putative glycosyl tra 100.0 1.2E-36 2.5E-41 317.7 42.7 378 6-464 2-405 (412)
5 TIGR03449 mycothiol_MshA UDP-N 100.0 2E-35 4.2E-40 306.9 41.4 367 14-468 18-402 (405)
6 PLN02871 UDP-sulfoquinovose:DA 100.0 7.7E-36 1.7E-40 317.4 38.1 353 18-471 77-438 (465)
7 TIGR03088 stp2 sugar transfera 100.0 4.4E-35 9.5E-40 300.8 40.2 357 3-461 1-367 (374)
8 cd03796 GT1_PIG-A_like This fa 100.0 1.2E-34 2.6E-39 301.7 38.8 352 13-469 11-369 (398)
9 cd03805 GT1_ALG2_like This fam 100.0 1.3E-34 2.8E-39 298.3 37.1 364 5-459 2-391 (392)
10 cd04962 GT1_like_5 This family 100.0 1.5E-33 3.2E-38 287.2 39.1 353 6-461 2-365 (371)
11 TIGR02472 sucr_P_syn_N sucrose 100.0 2.4E-33 5.1E-38 296.4 40.9 366 15-460 25-434 (439)
12 cd03800 GT1_Sucrose_synthase T 100.0 9.7E-33 2.1E-37 283.1 38.8 360 15-460 20-396 (398)
13 PRK15427 colanic acid biosynth 100.0 1.5E-32 3.2E-37 287.8 40.3 273 98-461 115-400 (406)
14 cd03794 GT1_wbuB_like This fam 100.0 3.5E-32 7.6E-37 272.7 40.6 360 16-458 15-391 (394)
15 cd03818 GT1_ExpC_like This fam 100.0 1.7E-32 3.7E-37 285.1 38.4 354 20-459 12-393 (396)
16 cd03817 GT1_UGDG_like This fam 100.0 4.4E-32 9.6E-37 271.6 37.8 351 17-462 16-372 (374)
17 TIGR02149 glgA_Coryne glycogen 100.0 3.5E-32 7.5E-37 279.8 37.6 346 16-462 16-382 (388)
18 cd05844 GT1_like_7 Glycosyltra 100.0 1.5E-32 3.3E-37 279.3 33.8 274 98-459 79-363 (367)
19 PRK00654 glgA glycogen synthas 100.0 1.1E-31 2.4E-36 285.9 40.2 373 15-469 16-464 (466)
20 cd03819 GT1_WavL_like This fam 100.0 5.2E-32 1.1E-36 273.5 35.7 331 13-454 7-353 (355)
21 TIGR02468 sucrsPsyn_pln sucros 100.0 1E-31 2.2E-36 301.8 41.5 307 101-465 310-669 (1050)
22 cd04955 GT1_like_6 This family 100.0 3.2E-31 6.8E-36 268.2 39.3 348 7-461 2-359 (363)
23 cd03814 GT1_like_2 This family 100.0 2E-31 4.3E-36 267.3 36.3 342 18-462 17-361 (364)
24 cd03808 GT1_cap1E_like This fa 100.0 3.8E-31 8.2E-36 262.4 37.7 345 7-460 2-357 (359)
25 cd03812 GT1_CapH_like This fam 100.0 2E-31 4.2E-36 269.6 35.7 328 14-446 10-344 (358)
26 cd03807 GT1_WbnK_like This fam 100.0 7.8E-31 1.7E-35 261.2 38.4 350 6-462 2-362 (365)
27 cd03806 GT1_ALG11_like This fa 100.0 5.2E-31 1.1E-35 277.2 38.5 358 11-455 8-415 (419)
28 TIGR02095 glgA glycogen/starch 100.0 4.2E-31 9.1E-36 281.6 38.2 287 100-461 127-467 (473)
29 cd04951 GT1_WbdM_like This fam 100.0 2.3E-30 4.9E-35 261.3 39.7 345 6-461 2-355 (360)
30 cd03795 GT1_like_4 This family 100.0 1E-30 2.2E-35 263.6 36.9 335 14-455 12-355 (357)
31 cd03799 GT1_amsK_like This is 100.0 4.4E-31 9.6E-36 266.0 34.2 328 17-459 13-354 (355)
32 PRK15484 lipopolysaccharide 1, 100.0 1.7E-30 3.6E-35 269.8 39.2 331 19-460 21-371 (380)
33 PRK15179 Vi polysaccharide bio 100.0 1.4E-30 3.1E-35 286.8 40.4 370 5-462 283-689 (694)
34 cd03801 GT1_YqgM_like This fam 100.0 2.3E-30 5E-35 256.1 36.6 347 16-460 15-369 (374)
35 cd03820 GT1_amsD_like This fam 100.0 5.9E-30 1.3E-34 252.7 36.7 327 15-458 12-344 (348)
36 cd03822 GT1_ecORF704_like This 100.0 7.2E-30 1.6E-34 256.6 37.7 273 100-461 75-362 (366)
37 cd03821 GT1_Bme6_like This fam 100.0 6.9E-30 1.5E-34 255.3 36.5 280 99-460 85-373 (375)
38 PLN02939 transferase, transfer 100.0 1.7E-29 3.7E-34 280.3 43.2 296 100-469 609-968 (977)
39 TIGR02470 sucr_synth sucrose s 100.0 1.4E-29 3E-34 279.6 41.3 363 28-461 300-742 (784)
40 cd03791 GT1_Glycogen_synthase_ 100.0 1.2E-29 2.7E-34 269.7 39.5 288 99-462 127-472 (476)
41 PRK14099 glycogen synthase; Pr 100.0 3.4E-29 7.5E-34 267.9 42.0 290 100-470 132-481 (485)
42 cd03792 GT1_Trehalose_phosphor 100.0 4.7E-30 1E-34 264.3 33.9 273 99-461 83-366 (372)
43 PLN02846 digalactosyldiacylgly 100.0 2.6E-29 5.7E-34 265.1 38.8 354 1-461 1-386 (462)
44 PLN02949 transferase, transfer 100.0 2E-29 4.4E-34 267.9 37.3 230 157-464 211-454 (463)
45 PLN02316 synthase/transferase 100.0 9.2E-29 2E-33 278.7 43.7 276 100-468 708-1034(1036)
46 cd03809 GT1_mtfB_like This fam 100.0 1.6E-29 3.4E-34 254.0 33.0 273 100-461 84-364 (365)
47 cd03802 GT1_AviGT4_like This f 100.0 2.4E-29 5.1E-34 252.1 33.5 310 14-461 17-331 (335)
48 cd03813 GT1_like_3 This family 100.0 1.3E-29 2.9E-34 270.5 33.4 274 99-460 171-470 (475)
49 cd03798 GT1_wlbH_like This fam 100.0 4.9E-29 1.1E-33 247.9 35.2 272 99-459 91-369 (377)
50 PRK14098 glycogen synthase; Pr 100.0 1.1E-28 2.3E-33 264.4 39.7 293 100-469 140-487 (489)
51 PLN00142 sucrose synthase 100.0 6E-29 1.3E-33 274.7 36.6 306 100-461 407-765 (815)
52 cd03811 GT1_WabH_like This fam 100.0 1.4E-28 3E-33 242.9 35.5 326 14-446 10-345 (353)
53 cd03823 GT1_ExpE7_like This fa 100.0 1.6E-28 3.4E-33 245.4 35.0 323 15-448 14-344 (359)
54 PRK15490 Vi polysaccharide bio 100.0 2.6E-28 5.6E-33 259.7 36.0 281 100-464 279-573 (578)
55 PRK09922 UDP-D-galactose:(gluc 100.0 2.3E-28 5E-33 251.1 33.6 242 100-448 83-341 (359)
56 TIGR03087 stp1 sugar transfera 100.0 2.5E-28 5.3E-33 254.2 32.7 346 15-459 14-389 (397)
57 cd03804 GT1_wbaZ_like This fam 100.0 2.4E-28 5.3E-33 248.7 30.1 250 99-455 81-345 (351)
58 cd03825 GT1_wcfI_like This fam 100.0 1.2E-27 2.6E-32 241.9 34.4 325 5-461 2-359 (365)
59 TIGR02918 accessory Sec system 100.0 8.8E-28 1.9E-32 257.7 32.7 270 100-467 210-499 (500)
60 cd04946 GT1_AmsK_like This fam 100.0 1.2E-27 2.7E-32 250.6 32.6 266 100-460 126-405 (407)
61 PRK10125 putative glycosyl tra 100.0 1.3E-26 2.8E-31 243.0 35.6 350 4-462 1-400 (405)
62 PLN02501 digalactosyldiacylgly 100.0 2.4E-26 5.1E-31 247.3 37.5 246 100-429 433-681 (794)
63 cd04949 GT1_gtfA_like This fam 100.0 1.6E-26 3.6E-31 236.8 29.0 267 100-459 98-371 (372)
64 cd04950 GT1_like_1 Glycosyltra 99.9 1.9E-24 4.1E-29 223.7 34.1 357 1-462 1-367 (373)
65 KOG1111 N-acetylglucosaminyltr 99.9 5.7E-26 1.2E-30 225.6 21.4 333 20-461 20-361 (426)
66 PHA01630 putative group 1 glyc 99.9 2.2E-24 4.8E-29 220.3 28.5 230 126-459 68-323 (331)
67 cd03785 GT1_MurG MurG is an N- 99.9 1.5E-23 3.2E-28 213.2 31.4 324 10-452 4-343 (350)
68 PRK00726 murG undecaprenyldiph 99.9 4.4E-23 9.6E-28 211.3 32.9 327 6-453 3-344 (357)
69 PRK05749 3-deoxy-D-manno-octul 99.9 5.6E-23 1.2E-27 216.0 33.6 265 100-451 123-406 (425)
70 TIGR01133 murG undecaprenyldip 99.9 8.3E-23 1.8E-27 207.6 31.4 324 6-452 2-340 (348)
71 PHA01633 putative glycosyl tra 99.9 5.5E-22 1.2E-26 202.2 27.9 233 127-458 70-331 (335)
72 PRK09814 beta-1,6-galactofuran 99.9 1.5E-21 3.2E-26 199.4 25.5 242 100-452 63-317 (333)
73 cd03793 GT1_Glycogen_synthase_ 99.9 1.8E-20 3.9E-25 200.0 31.1 322 100-464 147-584 (590)
74 PRK13609 diacylglycerol glucos 99.9 7.9E-21 1.7E-25 196.6 27.7 254 100-461 103-366 (380)
75 PF00534 Glycos_transf_1: Glyc 99.9 2.2E-21 4.8E-26 177.7 16.3 157 256-446 12-171 (172)
76 cd03788 GT1_TPS Trehalose-6-Ph 99.9 4.6E-20 9.9E-25 196.6 25.5 278 100-461 130-456 (460)
77 PLN02605 monogalactosyldiacylg 99.9 2.8E-19 6E-24 185.8 28.4 260 100-457 99-372 (382)
78 cd01635 Glycosyltransferase_GT 99.8 8.2E-19 1.8E-23 164.3 25.5 120 264-413 109-229 (229)
79 TIGR02400 trehalose_OtsA alpha 99.8 1.5E-18 3.1E-23 184.6 29.2 269 100-455 126-445 (456)
80 PRK00025 lpxB lipid-A-disaccha 99.8 2.6E-18 5.7E-23 177.3 27.6 327 6-446 3-354 (380)
81 PRK13608 diacylglycerol glucos 99.8 3.4E-18 7.5E-23 178.4 28.4 254 100-461 103-366 (391)
82 KOG1387 Glycosyltransferase [C 99.8 8.4E-17 1.8E-21 159.6 31.5 366 16-467 57-462 (465)
83 COG0297 GlgA Glycogen synthase 99.8 1.6E-16 3.5E-21 168.6 33.8 292 100-468 129-478 (487)
84 TIGR00236 wecB UDP-N-acetylglu 99.8 1.4E-17 2.9E-22 171.6 24.5 268 100-465 85-362 (365)
85 cd03786 GT1_UDP-GlcNAc_2-Epime 99.8 1.5E-17 3.2E-22 170.2 22.5 247 100-441 87-345 (363)
86 KOG0853 Glycosyltransferase [C 99.8 1.1E-17 2.5E-22 175.5 21.8 293 100-462 144-463 (495)
87 PLN03063 alpha,alpha-trehalose 99.8 9.2E-18 2E-22 188.9 21.3 277 100-463 146-473 (797)
88 COG0438 RfaG Glycosyltransfera 99.7 3.2E-15 7E-20 145.3 30.2 280 102-463 84-373 (381)
89 PRK14501 putative bifunctional 99.7 3.3E-15 7.2E-20 167.6 25.2 161 261-459 267-455 (726)
90 PF13692 Glyco_trans_1_4: Glyc 99.7 2.4E-16 5.2E-21 138.7 11.5 130 261-429 4-135 (135)
91 TIGR00215 lpxB lipid-A-disacch 99.7 2.8E-14 6E-19 148.9 24.8 330 6-447 7-365 (385)
92 TIGR03713 acc_sec_asp1 accesso 99.6 1.3E-13 2.9E-18 148.7 20.8 160 260-459 320-514 (519)
93 TIGR02398 gluc_glyc_Psyn gluco 99.5 3.8E-12 8.2E-17 135.8 27.5 135 261-429 287-448 (487)
94 COG0707 MurG UDP-N-acetylgluco 99.5 7E-11 1.5E-15 121.9 33.2 324 7-450 3-341 (357)
95 PRK12446 undecaprenyldiphospho 99.5 7.6E-11 1.6E-15 121.7 32.6 309 5-429 2-325 (352)
96 PLN03064 alpha,alpha-trehalose 99.4 5E-10 1.1E-14 127.1 30.7 163 261-460 365-554 (934)
97 PF13579 Glyco_trans_4_4: Glyc 99.4 5E-12 1.1E-16 112.3 11.5 151 20-195 6-160 (160)
98 TIGR02094 more_P_ylases alpha- 99.3 3.6E-09 7.7E-14 116.1 31.7 183 254-464 385-598 (601)
99 TIGR03492 conserved hypothetic 99.3 3.7E-09 8E-14 111.0 28.4 247 100-445 92-376 (396)
100 COG1519 KdtA 3-deoxy-D-manno-o 99.2 4E-08 8.7E-13 101.5 30.8 259 100-448 122-401 (419)
101 TIGR03568 NeuC_NnaA UDP-N-acet 99.2 2.9E-08 6.2E-13 103.1 29.7 239 100-428 92-338 (365)
102 PF13524 Glyco_trans_1_2: Glyc 99.2 1.5E-10 3.2E-15 95.9 9.3 86 372-461 5-91 (92)
103 PF13439 Glyco_transf_4: Glyco 99.2 4.1E-10 8.9E-15 101.6 12.5 165 11-200 7-176 (177)
104 PF05693 Glycogen_syn: Glycoge 99.1 3.4E-08 7.3E-13 106.2 27.6 267 157-457 212-572 (633)
105 TIGR02919 accessory Sec system 99.1 2.6E-08 5.7E-13 105.6 25.1 123 275-439 291-417 (438)
106 PF13528 Glyco_trans_1_3: Glyc 99.1 1.4E-08 3E-13 102.3 21.4 117 257-426 191-317 (318)
107 cd03784 GT1_Gtf_like This fami 99.0 2.6E-07 5.7E-12 96.2 28.5 89 342-446 288-384 (401)
108 PF13477 Glyco_trans_4_2: Glyc 99.0 1.8E-08 3.9E-13 89.1 15.5 128 19-174 11-139 (139)
109 PF09314 DUF1972: Domain of un 99.0 6.8E-08 1.5E-12 90.7 19.1 174 5-196 2-184 (185)
110 TIGR01426 MGT glycosyltransfer 98.9 6.3E-07 1.4E-11 93.4 26.1 108 319-446 257-372 (392)
111 cd04299 GT1_Glycogen_Phosphory 98.9 4.8E-07 1E-11 101.6 26.0 186 254-468 474-691 (778)
112 TIGR03590 PseG pseudaminic aci 98.8 5.9E-07 1.3E-11 89.9 21.7 255 15-398 14-269 (279)
113 TIGR00661 MJ1255 conserved hyp 98.6 1.3E-05 2.8E-10 81.5 25.2 77 342-428 229-313 (321)
114 PF02350 Epimerase_2: UDP-N-ac 98.6 1E-06 2.2E-11 91.0 15.2 245 100-429 66-318 (346)
115 COG0763 LpxB Lipid A disacchar 98.6 1.7E-05 3.8E-10 81.5 23.2 329 10-448 6-359 (381)
116 COG0381 WecB UDP-N-acetylgluco 98.5 3.9E-05 8.4E-10 79.1 25.1 256 100-448 91-356 (383)
117 PF04464 Glyphos_transf: CDP-G 98.5 2.5E-06 5.4E-11 88.3 16.1 219 124-429 96-336 (369)
118 PF00982 Glyco_transf_20: Glyc 98.4 0.00016 3.5E-09 77.7 27.5 158 260-448 277-456 (474)
119 PRK10117 trehalose-6-phosphate 98.4 0.00014 3.1E-09 77.6 25.9 165 261-457 257-447 (474)
120 PF02684 LpxB: Lipid-A-disacch 98.4 0.00021 4.5E-09 74.5 25.7 236 99-429 80-340 (373)
121 PRK01021 lpxB lipid-A-disaccha 98.2 0.00011 2.3E-09 80.3 20.8 245 100-447 309-585 (608)
122 PLN02205 alpha,alpha-trehalose 98.2 0.0012 2.7E-08 75.6 30.1 141 260-429 340-517 (854)
123 PF04007 DUF354: Protein of un 98.2 0.00044 9.5E-09 71.1 22.3 277 24-428 19-309 (335)
124 COG4641 Uncharacterized protei 98.1 0.0002 4.4E-09 73.4 18.8 112 342-457 237-352 (373)
125 COG1819 Glycosyl transferases, 98.1 0.00022 4.8E-09 75.3 20.0 126 255-429 234-368 (406)
126 COG4671 Predicted glycosyl tra 98.1 0.00059 1.3E-08 69.4 21.7 333 2-430 7-366 (400)
127 PF13844 Glyco_transf_41: Glyc 98.1 9.6E-05 2.1E-09 78.7 17.1 143 269-447 293-444 (468)
128 PHA03392 egt ecdysteroid UDP-g 98.1 0.0014 3.1E-08 71.1 26.2 89 342-445 346-444 (507)
129 PLN02448 UDP-glycosyltransfera 98.1 0.015 3.2E-07 62.5 33.5 95 342-448 323-431 (459)
130 COG0380 OtsA Trehalose-6-phosp 98.1 0.015 3.2E-07 62.4 32.9 148 260-439 283-452 (486)
131 PRK02797 4-alpha-L-fucosyltran 98.1 0.0013 2.8E-08 66.3 23.0 229 100-413 38-274 (322)
132 COG3914 Spy Predicted O-linked 98.0 0.003 6.5E-08 67.9 26.0 148 315-471 457-617 (620)
133 PF07429 Glyco_transf_56: 4-al 97.9 0.0026 5.7E-08 64.9 22.7 246 99-428 76-332 (360)
134 PRK10017 colanic acid biosynth 97.9 0.02 4.3E-07 61.0 30.3 101 333-447 297-407 (426)
135 PLN02208 glycosyltransferase f 97.9 0.05 1.1E-06 58.2 35.2 114 343-469 312-438 (442)
136 PLN02173 UDP-glucosyl transfer 97.8 0.058 1.3E-06 57.8 31.9 92 342-447 317-421 (449)
137 TIGR02195 heptsyl_trn_II lipop 97.8 0.003 6.5E-08 64.4 19.9 103 256-396 172-277 (334)
138 PLN02562 UDP-glycosyltransfera 97.7 0.11 2.4E-06 55.7 33.0 79 342-429 328-413 (448)
139 PRK10422 lipopolysaccharide co 97.6 0.054 1.2E-06 55.8 26.9 101 258-396 183-288 (352)
140 PLN00414 glycosyltransferase f 97.6 0.17 3.6E-06 54.3 33.8 89 349-448 318-418 (446)
141 PF08323 Glyco_transf_5: Starc 97.5 0.00015 3.3E-09 71.2 6.2 81 100-184 132-233 (245)
142 PLN02410 UDP-glucoronosyl/UDP- 97.5 0.2 4.3E-06 53.8 31.7 92 342-447 324-423 (451)
143 COG3660 Predicted nucleoside-d 97.2 0.16 3.4E-06 50.3 22.8 200 100-396 69-272 (329)
144 TIGR02201 heptsyl_trn_III lipo 97.2 0.039 8.5E-07 56.5 19.9 71 317-396 213-286 (344)
145 TIGR03609 S_layer_CsaB polysac 97.2 0.32 7E-06 48.7 25.7 201 100-397 63-277 (298)
146 PLN02210 UDP-glucosyl transfer 97.1 0.56 1.2E-05 50.4 34.3 91 343-447 325-428 (456)
147 PF04101 Glyco_tran_28_C: Glyc 97.1 1.6E-05 3.5E-10 72.9 -5.7 89 342-444 55-155 (167)
148 PRK10916 ADP-heptose:LPS hepto 97.1 0.18 3.9E-06 51.8 23.6 71 317-396 213-287 (348)
149 COG1817 Uncharacterized protei 97.1 0.23 4.9E-06 50.3 22.6 287 14-428 6-313 (346)
150 TIGR02193 heptsyl_trn_I lipopo 97.0 0.13 2.8E-06 52.0 20.9 130 257-426 178-318 (319)
151 PLN03007 UDP-glucosyltransfera 97.0 0.76 1.7E-05 49.7 38.0 92 342-447 345-453 (482)
152 PRK14089 ipid-A-disaccharide s 97.0 0.083 1.8E-06 54.7 19.4 184 100-396 75-261 (347)
153 PLN02534 UDP-glycosyltransfera 97.0 0.81 1.7E-05 49.7 34.9 117 342-471 344-487 (491)
154 cd03789 GT1_LPS_heptosyltransf 96.9 0.084 1.8E-06 52.4 18.5 73 317-398 153-226 (279)
155 COG0859 RfaF ADP-heptose:LPS h 96.7 0.27 5.8E-06 50.5 20.5 100 258-396 175-277 (334)
156 PF12000 Glyco_trans_4_3: Gkyc 96.5 0.054 1.2E-06 50.5 12.8 155 32-197 2-166 (171)
157 PF06258 Mito_fiss_Elm1: Mitoc 96.5 0.19 4.2E-06 51.3 17.6 76 317-399 182-259 (311)
158 PF00201 UDPGT: UDP-glucoronos 96.4 0.019 4.2E-07 61.7 10.8 79 342-429 323-409 (500)
159 PLN02670 transferase, transfer 96.2 0.083 1.8E-06 57.0 14.1 111 344-468 341-463 (472)
160 PLN02152 indole-3-acetate beta 95.9 3.1 6.7E-05 44.8 33.6 79 342-429 327-417 (455)
161 COG0058 GlgP Glucan phosphoryl 95.9 0.11 2.3E-06 58.4 13.4 135 255-415 484-630 (750)
162 PLN02764 glycosyltransferase f 95.6 0.17 3.7E-06 54.3 13.2 89 349-448 323-423 (453)
163 PLN02555 limonoid glucosyltran 95.6 0.24 5.2E-06 53.6 14.3 93 342-448 337-443 (480)
164 KOG3742 Glycogen synthase [Car 95.5 0.16 3.5E-06 53.4 11.8 104 332-443 457-587 (692)
165 PLN00164 glucosyltransferase; 95.4 0.32 6.9E-06 52.7 14.6 110 349-470 345-473 (480)
166 PLN03004 UDP-glycosyltransfera 95.3 0.24 5.2E-06 53.2 12.9 79 342-429 334-424 (451)
167 PLN02167 UDP-glycosyltransfera 95.2 0.45 9.7E-06 51.4 14.7 78 343-429 341-434 (475)
168 COG3980 spsG Spore coat polysa 94.9 1.7 3.7E-05 43.6 16.5 64 318-394 186-251 (318)
169 PF04230 PS_pyruv_trans: Polys 94.9 2.9 6.4E-05 39.8 18.2 48 342-397 237-284 (286)
170 PLN02554 UDP-glycosyltransfera 94.8 0.48 1E-05 51.3 13.7 78 342-428 342-439 (481)
171 PF10087 DUF2325: Uncharacteri 94.7 0.085 1.8E-06 44.2 6.0 83 320-403 2-89 (97)
172 PF01075 Glyco_transf_9: Glyco 94.4 0.12 2.5E-06 50.1 7.1 103 256-396 103-209 (247)
173 PF11997 DUF3492: Domain of un 94.2 0.48 1E-05 47.3 11.2 86 98-187 169-265 (268)
174 PLN02863 UDP-glucoronosyl/UDP- 94.1 1.6 3.4E-05 47.3 15.6 77 343-428 344-432 (477)
175 PRK14986 glycogen phosphorylas 94.0 0.51 1.1E-05 53.7 11.9 144 254-421 539-702 (815)
176 PRK10964 ADP-heptose:LPS hepto 93.6 0.98 2.1E-05 45.8 12.4 69 317-396 210-279 (322)
177 cd04300 GT1_Glycogen_Phosphory 92.8 1 2.2E-05 51.4 11.9 144 254-421 526-689 (797)
178 PLN02207 UDP-glycosyltransfera 92.7 2.9 6.4E-05 45.1 14.8 78 342-428 332-425 (468)
179 PF00862 Sucrose_synth: Sucros 92.3 3.9 8.5E-05 44.2 14.7 77 100-179 400-481 (550)
180 PF00343 Phosphorylase: Carboh 92.2 4.2 9E-05 45.9 15.6 143 254-420 440-602 (713)
181 TIGR02093 P_ylase glycogen/sta 92.0 1.2 2.5E-05 50.8 11.1 144 254-421 523-686 (794)
182 PLN03015 UDP-glucosyl transfer 91.7 22 0.00048 38.5 32.6 89 349-448 341-442 (470)
183 PF05159 Capsule_synth: Capsul 90.8 3 6.5E-05 41.2 11.7 70 315-396 153-225 (269)
184 PRK14985 maltodextrin phosphor 90.7 1.1 2.3E-05 51.1 9.1 144 254-421 525-688 (798)
185 COG2327 WcaK Polysaccharide py 90.6 25 0.00055 37.0 28.5 79 342-429 266-350 (385)
186 PF08660 Alg14: Oligosaccharid 90.2 3.5 7.5E-05 38.3 10.7 67 100-180 91-160 (170)
187 PLN02992 coniferyl-alcohol glu 89.9 2.9 6.2E-05 45.4 11.3 78 343-429 339-427 (481)
188 KOG1192 UDP-glucuronosyl and U 89.8 5 0.00011 42.9 13.2 106 316-429 309-422 (496)
189 PF10093 DUF2331: Uncharacteri 89.2 32 0.00069 36.1 19.0 47 343-398 245-291 (374)
190 PF08288 PIGA: PIGA (GPI ancho 86.5 2.8 6.2E-05 34.7 6.5 73 53-137 13-85 (90)
191 PF06925 MGDG_synth: Monogalac 81.6 10 0.00022 34.8 9.0 69 99-188 87-158 (169)
192 PF03016 Exostosin: Exostosin 77.2 3.9 8.4E-05 40.6 5.1 59 353-414 227-288 (302)
193 TIGR03837 efp_adjacent_2 conse 76.4 1E+02 0.0023 32.2 18.9 47 343-398 243-289 (371)
194 COG0373 HemA Glutamyl-tRNA red 76.2 78 0.0017 33.7 14.5 110 316-426 177-304 (414)
195 PF12038 DUF3524: Domain of un 75.5 52 0.0011 30.6 11.4 79 100-183 58-136 (168)
196 KOG1021 Acetylglucosaminyltran 72.2 56 0.0012 35.3 12.7 88 353-446 334-424 (464)
197 PRK00676 hemA glutamyl-tRNA re 71.7 51 0.0011 34.2 11.6 141 315-464 172-320 (338)
198 KOG3349 Predicted glycosyltran 69.8 50 0.0011 30.3 9.7 36 353-395 71-106 (170)
199 COG0569 TrkA K+ transport syst 69.4 62 0.0014 31.3 11.3 130 6-186 2-133 (225)
200 PLN02342 ornithine carbamoyltr 68.0 1.4E+02 0.0031 31.0 14.1 165 111-368 95-265 (348)
201 PF11440 AGT: DNA alpha-glucos 67.8 1.5E+02 0.0032 30.2 22.2 137 262-428 186-352 (355)
202 PF00290 Trp_syntA: Tryptophan 66.0 57 0.0012 32.5 10.3 154 256-447 86-254 (259)
203 PF04413 Glycos_transf_N: 3-De 65.1 39 0.00084 31.7 8.6 76 100-188 94-170 (186)
204 KOG4626 O-linked N-acetylgluco 63.6 1.5E+02 0.0033 33.3 13.5 123 315-447 786-918 (966)
205 TIGR00715 precor6x_red precorr 63.4 38 0.00082 33.6 8.5 90 327-427 159-255 (256)
206 TIGR02069 cyanophycinase cyano 62.3 37 0.0008 33.5 8.2 85 316-400 27-127 (250)
207 PRK13940 glutamyl-tRNA reducta 61.6 95 0.0021 33.1 11.7 104 316-424 180-301 (414)
208 PF03401 TctC: Tripartite tric 60.8 1.2E+02 0.0027 30.1 11.8 140 261-446 80-245 (274)
209 COG1519 KdtA 3-deoxy-D-manno-o 56.7 1.3E+02 0.0028 32.1 11.4 106 254-396 45-153 (419)
210 KOG1050 Trehalose-6-phosphate 55.4 2.3E+02 0.0051 32.5 13.9 145 258-429 275-440 (732)
211 PRK05562 precorrin-2 dehydroge 55.2 2E+02 0.0043 28.0 11.8 109 316-429 24-162 (223)
212 COG1703 ArgK Putative periplas 54.1 84 0.0018 32.1 9.1 115 4-138 48-177 (323)
213 TIGR00262 trpA tryptophan synt 53.5 2.3E+02 0.0051 27.9 12.5 126 257-415 87-228 (256)
214 PF00389 2-Hacid_dh: D-isomer 52.9 96 0.0021 26.9 8.5 86 330-423 9-101 (133)
215 COG1927 Mtd Coenzyme F420-depe 52.3 2.3E+02 0.005 27.5 11.9 88 315-425 29-126 (277)
216 PF01113 DapB_N: Dihydrodipico 52.3 14 0.0003 32.2 3.0 75 319-399 2-101 (124)
217 PF11071 DUF2872: Protein of u 51.7 60 0.0013 29.0 6.7 69 355-427 65-140 (141)
218 PRK10494 hypothetical protein; 51.0 64 0.0014 32.0 7.8 80 315-398 119-210 (259)
219 TIGR00670 asp_carb_tr aspartat 50.7 2.9E+02 0.0062 28.1 14.2 69 261-368 152-222 (301)
220 PF15024 Glyco_transf_18: Glyc 50.2 46 0.001 36.6 7.1 78 347-430 327-431 (559)
221 CHL00200 trpA tryptophan synth 48.3 2.9E+02 0.0063 27.5 15.1 127 256-415 90-232 (263)
222 TIGR01035 hemA glutamyl-tRNA r 47.3 2.7E+02 0.0058 29.6 12.3 87 316-403 179-282 (417)
223 PTZ00408 NAD-dependent deacety 47.2 1.4E+02 0.0031 29.3 9.5 58 342-399 151-209 (242)
224 PLN02527 aspartate carbamoyltr 47.0 3.3E+02 0.0071 27.7 14.4 128 161-368 91-224 (306)
225 cd05565 PTS_IIB_lactose PTS_II 46.9 50 0.0011 27.9 5.4 71 320-396 4-79 (99)
226 PRK13789 phosphoribosylamine-- 46.3 3.6E+02 0.0078 28.7 13.2 37 1-43 1-37 (426)
227 PTZ00182 3-methyl-2-oxobutanat 46.2 74 0.0016 33.1 7.7 107 317-426 233-354 (355)
228 PRK05447 1-deoxy-D-xylulose 5- 45.2 70 0.0015 33.8 7.3 40 353-396 80-122 (385)
229 PRK08057 cobalt-precorrin-6x r 45.0 69 0.0015 31.7 6.9 75 344-427 171-247 (248)
230 PRK00779 ornithine carbamoyltr 44.7 3.5E+02 0.0077 27.4 14.9 126 160-368 92-223 (304)
231 PF04392 ABC_sub_bind: ABC tra 44.6 3.3E+02 0.0071 27.0 12.9 94 330-429 150-251 (294)
232 PRK06849 hypothetical protein; 43.3 76 0.0016 33.0 7.4 38 1-43 1-38 (389)
233 PF03033 Glyco_transf_28: Glyc 42.3 15 0.00032 31.8 1.6 51 8-62 2-52 (139)
234 PRK04020 rps2P 30S ribosomal p 42.2 3E+02 0.0065 26.4 10.5 82 318-404 68-153 (204)
235 TIGR03646 YtoQ_fam YtoQ family 42.1 97 0.0021 27.7 6.5 68 355-426 68-142 (144)
236 PLN00203 glutamyl-tRNA reducta 42.0 2.3E+02 0.0049 31.2 10.9 86 317-403 266-374 (519)
237 PRK06249 2-dehydropantoate 2-r 41.8 1E+02 0.0023 31.0 7.9 46 5-60 6-51 (313)
238 PF04413 Glycos_transf_N: 3-De 41.7 56 0.0012 30.6 5.5 75 315-397 48-126 (186)
239 PF02826 2-Hacid_dh_C: D-isome 41.5 1.2E+02 0.0025 28.0 7.6 84 314-398 33-129 (178)
240 cd03146 GAT1_Peptidase_E Type 41.5 1.7E+02 0.0037 27.8 9.0 81 316-398 30-123 (212)
241 PRK14138 NAD-dependent deacety 41.3 1.6E+02 0.0035 28.9 8.9 82 342-426 155-240 (244)
242 PRK10886 DnaA initiator-associ 40.8 91 0.002 29.6 6.8 66 300-369 96-163 (196)
243 COG1887 TagB Putative glycosyl 40.3 4.7E+02 0.01 27.6 17.7 83 353-446 277-367 (388)
244 COG4370 Uncharacterized protei 39.8 1E+02 0.0022 31.7 7.1 215 156-447 168-393 (412)
245 PLN02735 carbamoyl-phosphate s 39.8 5.2E+02 0.011 31.3 14.3 43 3-45 573-620 (1102)
246 cd01408 SIRT1 SIRT1: Eukaryoti 39.1 1.5E+02 0.0033 28.8 8.3 57 342-400 152-212 (235)
247 COG2247 LytB Putative cell wal 39.1 72 0.0016 32.7 6.0 77 315-396 75-162 (337)
248 cd00027 BRCT Breast Cancer Sup 38.9 1.3E+02 0.0027 21.7 6.2 62 318-396 2-65 (72)
249 PF02571 CbiJ: Precorrin-6x re 38.9 83 0.0018 31.1 6.4 78 338-424 166-248 (249)
250 PRK00994 F420-dependent methyl 38.3 1.9E+02 0.004 28.7 8.4 38 6-43 4-41 (277)
251 COG0078 ArgF Ornithine carbamo 38.2 4.6E+02 0.0099 26.9 12.2 137 145-368 82-227 (310)
252 TIGR01470 cysG_Nterm siroheme 37.9 3.6E+02 0.0078 25.6 11.3 44 358-403 65-108 (205)
253 TIGR00853 pts-lac PTS system, 37.5 58 0.0013 27.1 4.4 72 319-397 6-83 (95)
254 PRK09358 adenosine deaminase; 37.0 3.7E+02 0.0079 27.3 11.2 101 329-447 208-319 (340)
255 COG2099 CobK Precorrin-6x redu 36.5 4.1E+02 0.0089 26.5 10.6 85 331-427 161-252 (257)
256 PRK13234 nifH nitrogenase redu 35.7 38 0.00083 34.0 3.6 42 1-43 1-42 (295)
257 cd05564 PTS_IIB_chitobiose_lic 35.7 77 0.0017 26.3 4.9 69 320-396 3-78 (96)
258 COG0489 Mrp ATPases involved i 35.7 4.5E+02 0.0097 26.0 11.4 27 13-40 67-93 (265)
259 PRK05647 purN phosphoribosylgl 35.5 2.2E+02 0.0048 27.0 8.6 54 5-62 2-58 (200)
260 cd03145 GAT1_cyanophycinase Ty 35.1 3.2E+02 0.0069 26.1 9.7 69 330-398 47-126 (217)
261 TIGR01658 EYA-cons_domain eyes 34.8 85 0.0018 31.2 5.6 42 314-362 227-268 (274)
262 PLN02683 pyruvate dehydrogenas 34.7 1.3E+02 0.0029 31.3 7.5 105 319-428 230-351 (356)
263 PF00852 Glyco_transf_10: Glyc 34.6 1.2E+02 0.0026 31.4 7.2 91 343-439 203-304 (349)
264 COG0111 SerA Phosphoglycerate 34.6 1.7E+02 0.0037 30.1 8.1 78 316-394 141-231 (324)
265 TIGR03029 EpsG chain length de 34.2 3.2E+02 0.0069 26.7 9.9 37 100-136 211-247 (274)
266 cd01967 Nitrogenase_MoFe_alpha 34.2 5.6E+02 0.012 26.7 14.9 72 317-395 160-237 (406)
267 PRK02102 ornithine carbamoyltr 34.0 5.5E+02 0.012 26.5 14.4 166 111-369 56-231 (331)
268 PRK09212 pyruvate dehydrogenas 34.0 2E+02 0.0044 29.4 8.6 71 318-389 202-279 (327)
269 PRK06027 purU formyltetrahydro 33.9 1.8E+02 0.0039 29.3 8.1 56 3-62 88-144 (286)
270 cd01080 NAD_bind_m-THF_DH_Cycl 33.9 93 0.002 28.8 5.5 52 315-369 42-94 (168)
271 PRK00045 hemA glutamyl-tRNA re 33.6 6E+02 0.013 26.9 13.1 87 316-403 181-285 (423)
272 PF12738 PTCB-BRCT: twin BRCT 33.3 1.5E+02 0.0034 21.9 5.9 60 319-396 2-62 (63)
273 PRK10834 vancomycin high tempe 33.0 2.3E+02 0.0049 28.0 8.3 77 315-397 80-169 (239)
274 cd03129 GAT1_Peptidase_E_like 33.0 3.3E+02 0.0071 25.6 9.4 82 317-398 29-123 (210)
275 PF10649 DUF2478: Protein of u 32.4 63 0.0014 29.8 4.1 35 361-395 92-129 (159)
276 PLN02929 NADH kinase 32.0 1.4E+02 0.0031 30.4 6.9 90 331-429 38-137 (301)
277 CHL00073 chlN photochlorophyll 31.8 6.9E+02 0.015 27.0 16.4 91 319-429 195-289 (457)
278 PRK04523 N-acetylornithine car 31.5 6E+02 0.013 26.2 13.7 46 317-369 199-251 (335)
279 KOG0832 Mitochondrial/chloropl 30.6 5.4E+02 0.012 25.4 12.1 56 364-428 175-234 (251)
280 cd01410 SIRT7 SIRT7: Eukaryoti 30.1 1.2E+02 0.0026 28.9 5.8 57 342-398 132-191 (206)
281 PF03308 ArgK: ArgK protein; 29.3 1.7E+02 0.0036 29.3 6.7 110 9-138 34-155 (266)
282 PRK06932 glycerate dehydrogena 28.9 1.8E+02 0.0038 29.7 7.1 81 316-397 146-234 (314)
283 PRK15438 erythronate-4-phospha 28.9 2.1E+02 0.0045 30.1 7.8 82 315-396 114-207 (378)
284 TIGR02014 BchZ chlorophyllide 28.9 5.7E+02 0.012 27.7 11.3 141 316-465 279-432 (468)
285 COG0159 TrpA Tryptophan syntha 28.9 6E+02 0.013 25.4 13.0 127 256-415 93-234 (265)
286 COG2984 ABC-type uncharacteriz 28.8 2.4E+02 0.0052 29.0 7.9 109 315-429 156-279 (322)
287 PRK08410 2-hydroxyacid dehydro 28.3 2.3E+02 0.0049 28.8 7.8 81 316-397 144-233 (311)
288 cd05014 SIS_Kpsf KpsF-like pro 28.0 1.5E+02 0.0033 25.1 5.6 75 319-397 2-82 (128)
289 PF13407 Peripla_BP_4: Peripla 27.9 5.1E+02 0.011 24.3 10.1 93 330-428 18-120 (257)
290 cd01409 SIRT4 SIRT4: Eukaryoti 27.7 1.4E+02 0.0031 29.5 6.1 57 342-398 181-240 (260)
291 PRK08306 dipicolinate synthase 27.7 2E+02 0.0043 29.0 7.2 84 318-404 3-110 (296)
292 PRK05282 (alpha)-aspartyl dipe 27.5 4.2E+02 0.0091 25.9 9.2 66 330-399 51-123 (233)
293 PRK08229 2-dehydropantoate 2-r 27.5 1.2E+02 0.0026 30.8 5.6 31 6-42 4-34 (341)
294 TIGR00337 PyrG CTP synthase. C 26.9 2E+02 0.0042 31.8 7.3 83 316-398 288-381 (525)
295 PLN02928 oxidoreductase family 26.9 2.1E+02 0.0045 29.7 7.3 81 315-396 157-262 (347)
296 PF00205 TPP_enzyme_M: Thiamin 26.9 1.5E+02 0.0032 25.8 5.4 50 319-369 14-84 (137)
297 PRK15482 transcriptional regul 26.8 3.2E+02 0.0069 27.0 8.5 94 319-413 137-233 (285)
298 PRK05333 NAD-dependent deacety 26.7 3.9E+02 0.0086 26.7 9.1 81 342-427 191-277 (285)
299 PF06189 5-nucleotidase: 5'-nu 26.6 5.4E+02 0.012 25.8 9.7 70 316-395 35-108 (264)
300 PF07302 AroM: AroM protein; 26.6 3.3E+02 0.0071 26.5 8.1 108 261-396 92-209 (221)
301 KOG3339 Predicted glycosyltran 26.5 3.5E+02 0.0075 25.9 7.8 34 9-42 42-75 (211)
302 PRK12921 2-dehydropantoate 2-r 26.3 2.1E+02 0.0045 28.3 7.1 30 6-41 2-31 (305)
303 COG1154 Dxs Deoxyxylulose-5-ph 25.9 1.8E+02 0.0038 32.5 6.7 122 304-428 487-623 (627)
304 COG1440 CelA Phosphotransferas 25.8 2E+02 0.0043 24.6 5.6 72 320-396 5-80 (102)
305 TIGR01012 Sa_S2_E_A ribosomal 25.8 2.8E+02 0.0061 26.5 7.3 82 318-404 62-147 (196)
306 cd01413 SIR2_Af2 SIR2_Af2: Arc 25.2 1.6E+02 0.0036 28.3 5.9 57 342-398 148-207 (222)
307 PF10686 DUF2493: Protein of u 25.2 3.4E+02 0.0074 21.3 8.0 59 261-349 6-66 (71)
308 PRK05380 pyrG CTP synthetase; 25.1 3.1E+02 0.0066 30.3 8.4 84 315-398 286-381 (533)
309 PRK06487 glycerate dehydrogena 24.9 2E+02 0.0043 29.3 6.7 81 316-397 147-234 (317)
310 PTZ00409 Sir2 (Silent Informat 24.6 2E+02 0.0044 28.7 6.5 84 342-428 176-263 (271)
311 cd01320 ADA Adenosine deaminas 24.2 5.8E+02 0.013 25.5 10.0 113 317-447 188-310 (325)
312 PF13241 NAD_binding_7: Putati 24.2 68 0.0015 26.8 2.6 83 316-404 6-100 (103)
313 COG1927 Mtd Coenzyme F420-depe 24.0 5.3E+02 0.011 25.1 8.6 38 6-43 4-41 (277)
314 PF01784 NIF3: NIF3 (NGG1p int 23.9 3.7E+02 0.008 26.1 8.1 94 261-402 131-225 (241)
315 PF01924 HypD: Hydrogenase for 23.8 2E+02 0.0043 30.0 6.3 81 315-397 123-215 (355)
316 cd05312 NAD_bind_1_malic_enz N 23.8 4.7E+02 0.01 26.4 8.9 39 355-395 96-138 (279)
317 cd05005 SIS_PHI Hexulose-6-pho 23.7 4.4E+02 0.0096 23.9 8.3 74 319-397 35-110 (179)
318 PRK10017 colanic acid biosynth 23.6 7.3E+02 0.016 26.5 10.9 48 354-401 109-162 (426)
319 COG0287 TyrA Prephenate dehydr 23.5 1.3E+02 0.0028 30.3 4.9 36 4-45 3-38 (279)
320 TIGR01007 eps_fam capsular exo 23.3 5.9E+02 0.013 23.5 10.3 39 3-42 16-55 (204)
321 smart00672 CAP10 Putative lipo 23.3 5.3E+02 0.011 25.5 9.1 70 377-450 156-231 (256)
322 PRK06718 precorrin-2 dehydroge 23.3 6.3E+02 0.014 23.8 12.5 83 316-403 9-108 (202)
323 PRK00481 NAD-dependent deacety 23.3 5.4E+02 0.012 24.9 9.2 79 342-423 154-236 (242)
324 PF02441 Flavoprotein: Flavopr 23.3 1.1E+02 0.0023 26.6 3.8 36 5-42 1-36 (129)
325 PF05014 Nuc_deoxyrib_tr: Nucl 23.1 72 0.0016 27.0 2.6 41 357-397 56-97 (113)
326 PF10933 DUF2827: Protein of u 23.0 4.1E+02 0.009 27.8 8.4 104 328-448 236-345 (364)
327 TIGR00075 hypD hydrogenase exp 23.0 3.3E+02 0.0071 28.6 7.7 81 315-397 134-226 (369)
328 COG3563 KpsC Capsule polysacch 22.9 2.5E+02 0.0054 30.7 6.9 44 342-396 208-251 (671)
329 PLN02225 1-deoxy-D-xylulose-5- 22.8 1.8E+02 0.0038 33.3 6.2 106 319-428 569-691 (701)
330 TIGR02105 III_needle type III 22.7 3.2E+02 0.0069 21.8 6.0 55 416-472 18-72 (72)
331 PRK00048 dihydrodipicolinate r 22.6 1.8E+02 0.0038 28.6 5.6 41 353-396 51-91 (257)
332 PRK11891 aspartate carbamoyltr 22.5 9.8E+02 0.021 25.7 14.2 70 261-368 243-314 (429)
333 PF04127 DFP: DNA / pantothena 22.5 2.4E+02 0.0053 26.4 6.3 40 17-62 27-67 (185)
334 TIGR00288 conserved hypothetic 22.4 4.6E+02 0.01 24.2 7.8 68 271-369 88-155 (160)
335 KOG3244 Protein involved in ub 22.2 54 0.0012 32.0 1.7 76 374-468 179-254 (267)
336 PRK04284 ornithine carbamoyltr 22.2 8.7E+02 0.019 25.0 13.8 79 111-203 55-136 (332)
337 cd01020 TroA_b Metal binding p 22.1 5.3E+02 0.011 25.3 8.9 87 356-448 46-134 (264)
338 COG2085 Predicted dinucleotide 21.8 3E+02 0.0064 26.6 6.7 35 5-45 2-36 (211)
339 PRK15409 bifunctional glyoxyla 21.6 2.7E+02 0.0059 28.5 6.9 80 316-396 144-236 (323)
340 PRK05749 3-deoxy-D-manno-octul 21.5 4.1E+02 0.0088 27.7 8.5 104 256-396 48-154 (425)
341 PF01488 Shikimate_DH: Shikima 21.4 1.9E+02 0.0041 25.3 5.1 16 353-368 66-81 (135)
342 PRK08305 spoVFB dipicolinate s 21.3 81 0.0018 30.1 2.8 41 2-43 3-43 (196)
343 COG1893 ApbA Ketopantoate redu 21.3 2.9E+02 0.0063 28.0 7.0 102 6-137 2-103 (307)
344 PF00072 Response_reg: Respons 21.3 4.3E+02 0.0092 21.0 8.2 99 321-424 2-112 (112)
345 cd02071 MM_CoA_mut_B12_BD meth 21.0 3.7E+02 0.008 23.0 6.7 42 316-361 80-121 (122)
346 KOG0780 Signal recognition par 21.0 7.8E+02 0.017 26.4 9.9 147 264-442 159-324 (483)
347 COG4394 Uncharacterized protei 20.9 9.2E+02 0.02 24.8 10.0 47 343-398 239-285 (370)
348 PTZ00254 40S ribosomal protein 20.8 6.8E+02 0.015 24.8 9.2 80 319-404 73-157 (249)
349 PRK13398 3-deoxy-7-phosphohept 20.8 8.4E+02 0.018 24.2 10.1 61 330-397 81-142 (266)
350 PRK04885 ppnK inorganic polyph 20.7 2.4E+02 0.0051 28.2 6.1 53 361-429 34-93 (265)
351 PRK12815 carB carbamoyl phosph 20.6 1.5E+03 0.033 27.2 14.3 38 157-194 676-713 (1068)
352 PLN02582 1-deoxy-D-xylulose-5- 20.3 2.1E+02 0.0045 32.6 6.2 106 319-428 545-667 (677)
353 PLN02670 transferase, transfer 20.2 1.1E+03 0.024 25.5 12.2 61 1-62 1-66 (472)
354 PRK13011 formyltetrahydrofolat 20.2 5.4E+02 0.012 25.9 8.6 56 3-62 88-144 (286)
355 PRK11519 tyrosine kinase; Prov 20.1 8E+02 0.017 28.0 10.9 35 100-135 634-668 (719)
356 PRK06179 short chain dehydroge 20.1 4.8E+02 0.01 24.9 8.2 52 1-62 1-53 (270)
No 1
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-67 Score=515.10 Aligned_cols=431 Identities=54% Similarity=0.913 Sum_probs=386.4
Q ss_pred CCCCceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHH
Q 011969 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLL 80 (474)
Q Consensus 1 m~~~~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~ 80 (474)
|++++++||+++||+|+||||+|+|.+||++ |++|++++|.++.++.++.++++|+||.++..+ .....++.+..
T Consensus 9 ~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~-gf~VdliGy~~s~p~e~l~~hprI~ih~m~~l~----~~~~~p~~~~l 83 (444)
T KOG2941|consen 9 KSKKKRAIVVVLGDVGRSPRMQYHALSLAKL-GFQVDLIGYVESIPLEELLNHPRIRIHGMPNLP----FLQGGPRVLFL 83 (444)
T ss_pred ccccceEEEEEecccCCChHHHHHHHHHHHc-CCeEEEEEecCCCChHHHhcCCceEEEeCCCCc----ccCCCchhhhh
Confidence 5678999999999999999999999999997 999999999999999999999999999999433 23334556668
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhh-hhhhccCCCchHHHHHHHH
Q 011969 81 LLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYT-LLSLSLGRRSHFVSIYRWI 159 (474)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~-~~~~~~~~~~~~~~~~~~~ 159 (474)
..+.++|+.+++|.+.. ...+|+|+++|||++|++.++++++.++|.++++||||++|+ .+....+..++++++.+|+
T Consensus 84 ~lKvf~Qfl~Ll~aL~~-~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~~~~ 162 (444)
T KOG2941|consen 84 PLKVFWQFLSLLWALFV-LRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLVRWL 162 (444)
T ss_pred HHHHHHHHHHHHHHHHh-ccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHHHhhcCCCCchHHHHHHH
Confidence 89999999999999988 589999999999999999999999999999999999999997 7788889999999999999
Q ss_pred HHHHhhhcCEEEEeCHHHHHHHHHHhCC-ceEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcC
Q 011969 160 EKYYGKMANGCLCVTQAMQHELAQNWGI-KATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQK 238 (474)
Q Consensus 160 e~~~~~~ad~vi~vS~~~~~~l~~~~~~-~~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (474)
|+++.+.||.-+|||++|++++.++||+ ++.++|+.|++ +|++.+++++++.+++...+ +|... .-+.+.
T Consensus 163 E~~fgk~a~~nLcVT~AMr~dL~qnWgi~ra~v~YDrPps--~~~~l~~~H~lf~~l~~d~~------~f~ar-~~q~~~ 233 (444)
T KOG2941|consen 163 EKYFGKLADYNLCVTKAMREDLIQNWGINRAKVLYDRPPS--KPTPLDEQHELFMKLAGDHS------PFRAR-EPQDKA 233 (444)
T ss_pred HHHhhcccccchhhHHHHHHHHHHhcCCceeEEEecCCCC--CCCchhHHHHHHhhhccccc------hhhhc-ccccch
Confidence 9999999999999999999999999997 69999999887 78888899999999874211 22222 123333
Q ss_pred cchhhhhccc-ccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCC
Q 011969 239 ADETIFTSLA-GIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPR 317 (474)
Q Consensus 239 ~~~~~~~~~~-~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (474)
-+++.|+... .+++...+++|.+++.+++|++++++.+|++|+..+.++ --+++-.+|.
T Consensus 234 ~~~taf~~k~~s~~v~~~~~~pallvsSTswTpDEdf~ILL~AL~~y~~~--------------------~~~~~~~lP~ 293 (444)
T KOG2941|consen 234 LERTAFTKKDASGDVQLLPERPALLVSSTSWTPDEDFGILLEALVIYEEQ--------------------LYDKTHNLPS 293 (444)
T ss_pred hhhhhHhhhcccchhhhccCCCeEEEecCCCCCcccHHHHHHHHHhhhhh--------------------hhhccCCCCc
Confidence 3447787554 488889999999999999999999999999999987553 1122346899
Q ss_pred EEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc
Q 011969 318 LLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 397 (474)
Q Consensus 318 ~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~ 397 (474)
+..+|+|+||.++.+.+.++++.+++|.+...|++.||++.+++.||++||+|++|+|.++|||+++++.||+||||.++
T Consensus 294 llciITGKGPlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~f 373 (444)
T KOG2941|consen 294 LLCIITGKGPLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNF 373 (444)
T ss_pred EEEEEcCCCchhHHHHHHHHHhcccceeeeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Q 011969 398 SCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITE 467 (474)
Q Consensus 398 ~~~~e~v~~~~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 467 (474)
.|+.|+|++++||++++|.++|++++..++++||++...++++++|++|. ++.+|+++|++.+.|++..
T Consensus 374 kcl~ELVkh~eNGlvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~-~e~RW~~~W~~~~~P~~~~ 442 (444)
T KOG2941|consen 374 KCLDELVKHGENGLVFEDSEELAEQLQMLFKNFPDNADELNQLKKNLREE-QELRWDESWERTALPLVMD 442 (444)
T ss_pred hhHHHHHhcCCCceEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH-HhhhHHHHHHHhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999996 5999999999999987654
No 2
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=8.6e-48 Score=403.68 Aligned_cols=411 Identities=54% Similarity=0.928 Sum_probs=316.0
Q ss_pred CCCceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHH
Q 011969 2 GRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLL 81 (474)
Q Consensus 2 ~~~~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~ 81 (474)
.++||+|++...++|..+|+.+++.+|+++ ||+|+|+++.+..+..+.....||+++.++ ... ....+....+..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~R~~~~a~~L~~~-G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~--~~~-~~~~~~~~~~~~~ 76 (415)
T cd03816 1 PKRKRVCVLVLGDIGRSPRMQYHALSLAKH-GWKVDLVGYLETPPHDEILSNPNITIHPLP--PPP-QRLNKLPFLLFAP 76 (415)
T ss_pred CCccEEEEEEecccCCCHHHHHHHHHHHhc-CceEEEEEecCCCCCHHHhcCCCEEEEECC--CCc-cccccchHHHHHH
Confidence 378999999999999999999999999997 999999998865544343556799999988 221 1123334444444
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHH
Q 011969 82 LKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEK 161 (474)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~ 161 (474)
.+.+.+++.+++.++.+ .+||+||+++++.+++..++++++++.+.|+|+++|+.+++......+..+++.+++.++|+
T Consensus 77 ~~~~~~~~~~~~~l~~~-~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~ 155 (415)
T cd03816 77 LKVLWQFFSLLWLLYKL-RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTILALKLGENHPLVRLAKWYEK 155 (415)
T ss_pred HHHHHHHHHHHHHHHhc-CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHHHhcccCCCCHHHHHHHHHHH
Confidence 55555555566655544 68999999998888877778888888899999999998655443333445556678889999
Q ss_pred HHhhhcCEEEEeCHHHHHHHHHHhC---CceEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcC
Q 011969 162 YYGKMANGCLCVTQAMQHELAQNWG---IKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQK 238 (474)
Q Consensus 162 ~~~~~ad~vi~vS~~~~~~l~~~~~---~~~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (474)
.+++.||.++|+|+.+++++.+ ++ .++.++||++.+.|.|.+..........++.. .+
T Consensus 156 ~~~~~ad~ii~vS~~~~~~l~~-~~~~~~ki~vI~Ng~~~~f~p~~~~~~~~~~~~~~~~------------------~~ 216 (415)
T cd03816 156 LFGRLADYNLCVTKAMKEDLQQ-FNNWKIRATVLYDRPPEQFRPLPLEEKHELFLKLAKT------------------FL 216 (415)
T ss_pred HHhhcCCEeeecCHHHHHHHHh-hhccCCCeeecCCCCHHHceeCcHHHHHHHHHhcccc------------------cc
Confidence 9999999999999999999977 44 34899999977777776432221111110000 00
Q ss_pred cchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCE
Q 011969 239 ADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRL 318 (474)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (474)
. ...........++++.+++++|++.+.||++.|++|+..+.+.. ......|++
T Consensus 217 ~-----~~~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~---------------------~~~~~~~~i 270 (415)
T cd03816 217 T-----RELRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSA---------------------ATGPKLPKL 270 (415)
T ss_pred c-----cccccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhh---------------------cccccCCCE
Confidence 0 00000000122445568889999999999999999999986520 000124789
Q ss_pred EEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc
Q 011969 319 LFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 398 (474)
Q Consensus 319 ~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~ 398 (474)
+|+|+|+|+..+++++.+++++++++.|.++|++.++++.+|+.||++++|..++.++++|++++||||||+|||+++.+
T Consensus 271 ~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~ 350 (415)
T cd03816 271 LCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK 350 (415)
T ss_pred EEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCC
Confidence 99999999999999999999999888888766999999999999999998655556788999999999999999999999
Q ss_pred ccccccccCCcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Q 011969 399 CIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPL 464 (474)
Q Consensus 399 ~~~e~v~~~~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 464 (474)
+..|+++++.+|++++|+++++++|..++++.+ +++.+++|++++++.. +.+|+..|++++-|+
T Consensus 351 ~~~eiv~~~~~G~lv~d~~~la~~i~~ll~~~~-~~~~~~~m~~~~~~~~-~~~~~~~~~~~~~~~ 414 (415)
T cd03816 351 CIDELVKHGENGLVFGDSEELAEQLIDLLSNFP-NRGKLNSLKKGAQEES-ELRWDENWDRVVGPL 414 (415)
T ss_pred CHHHHhcCCCCEEEECCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhh-hcCHHHHHHHHhhhh
Confidence 999999999999999999999999999998410 2789999999999977 999999999998776
No 3
>PLN02275 transferase, transferring glycosyl groups
Probab=100.00 E-value=6.2e-46 Score=383.93 Aligned_cols=371 Identities=79% Similarity=1.259 Sum_probs=292.7
Q ss_pred CCCCceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHH
Q 011969 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLL 80 (474)
Q Consensus 1 m~~~~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~ 80 (474)
|+++.++.|++++++|.++||..++..++++.+++|+|+++.+.....+.....|+++++++. +......++....+..
T Consensus 1 ~~~~~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~-~~~~~~~~~~~~~~~~ 79 (371)
T PLN02275 1 MGRRGRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQ-PRLLQRLPRVLYALAL 79 (371)
T ss_pred CCCccEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECCC-cccccccccchHHHHH
Confidence 899999999999999999999999999999734589999998766655666777899999984 2222234444444445
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHH
Q 011969 81 LLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIE 160 (474)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e 160 (474)
+....+.+..++|.+..+..+||+||+++|+.+....++++++++.+.|+|+++|+.++............+.+++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e 159 (371)
T PLN02275 80 LLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGYTLLALSLGRSHPLVRLYRWYE 159 (371)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccHHHHhcccCCCCHHHHHHHHHH
Confidence 55555666667777655568999999999887776667888888889999999999864333222333455567888999
Q ss_pred HHHhhhcCEEEEeCHHHHHHHHHHhCCceEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcc
Q 011969 161 KYYGKMANGCLCVTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKAD 240 (474)
Q Consensus 161 ~~~~~~ad~vi~vS~~~~~~l~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (474)
+.+++.||.++++|+.+++.+.+.++.++.+++|++.+.|.|.....
T Consensus 160 ~~~~~~ad~ii~~S~~~~~~l~~~~g~~i~vi~n~~~~~f~~~~~~~--------------------------------- 206 (371)
T PLN02275 160 RHYGKMADGHLCVTKAMQHELDQNWGIRATVLYDQPPEFFRPASLEI--------------------------------- 206 (371)
T ss_pred HHHHhhCCEEEECCHHHHHHHHHhcCCCeEEECCCCHHHcCcCCchh---------------------------------
Confidence 99999999999999999999988777778899998666665542110
Q ss_pred hhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEE
Q 011969 241 ETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF 320 (474)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 320 (474)
....+.+.+++++|++.+.||++.+++|+..+..++....+.++ +.+......|+++|
T Consensus 207 ------------~~~~~~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~----------~~~~~~~~~~~i~l 264 (371)
T PLN02275 207 ------------RLRPNRPALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESD----------SASGKQSLYPRLLF 264 (371)
T ss_pred ------------cccCCCcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhcccccc----------ccccccccCCCeEE
Confidence 01123344788999999999999999999988654333222111 11111123578999
Q ss_pred EEEeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccccc
Q 011969 321 IITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI 400 (474)
Q Consensus 321 ~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~ 400 (474)
+|+|+|++++++++.++++++++|.|.++|++.++++.+|+.||++|+|..++.+|++|++++||||||+|||+++.++.
T Consensus 265 ~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~ 344 (371)
T PLN02275 265 IITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI 344 (371)
T ss_pred EEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCCh
Confidence 99999999999999999999988999887799999999999999999865445678999999999999999999999999
Q ss_pred ccccccCCcEEEeCCHHHHHHHHHHHH
Q 011969 401 EELVKVDKNGLLFSSSSELADQLLMLF 427 (474)
Q Consensus 401 ~e~v~~~~~G~l~~~~~~la~~i~~l~ 427 (474)
+|+|+++.+|++++++++|+++|.+++
T Consensus 345 ~eiv~~g~~G~lv~~~~~la~~i~~l~ 371 (371)
T PLN02275 345 GELVKDGKNGLLFSSSSELADQLLELL 371 (371)
T ss_pred HHHccCCCCeEEECCHHHHHHHHHHhC
Confidence 999999999999999999999998864
No 4
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=1.2e-36 Score=317.73 Aligned_cols=378 Identities=17% Similarity=0.198 Sum_probs=265.9
Q ss_pred eEEEEEe---CCCCCC-chHHHHHHHHHhhCCCeEEEEecCCCCCC-----------cceeccCCeEEEEeecCCCCCCC
Q 011969 6 RACVVVL---GDLGRS-PRMQYQALSLARQMSLEVDVVAYGGSKPH-----------AAILEHPSIHIHTMTQWPTIPRG 70 (474)
Q Consensus 6 ~~~i~~~---~~~g~~-~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~-----------~~~~~~~gi~i~~~~~~~~~~~~ 70 (474)
+++++.. .++||. .++...+..|.++ ||+|+|+|.....+. ......+|+++++++.+.. ..
T Consensus 2 kIlii~~~~~P~~~g~~~~~~~l~~~L~~~-G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~--~~ 78 (412)
T PRK10307 2 KILVYGINYAPELTGIGKYTGEMAEWLAAR-GHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVP--KQ 78 (412)
T ss_pred eEEEEecCCCCCccchhhhHHHHHHHHHHC-CCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCC--CC
Confidence 3555543 444543 4566778899996 999999996532111 0122356999999984321 11
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhh-hhccCCC
Q 011969 71 LPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLL-SLSLGRR 149 (474)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-~~~~~~~ 149 (474)
...+.+.+.... +.......+ ......+||+||+++|+... ..++.+++++.+.|+++++||++.... .....+.
T Consensus 79 ~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~Div~~~~p~~~~-~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~~~~ 154 (412)
T PRK10307 79 PSGLKRLLHLGS-FALSSFFPL--LAQRRWRPDRVIGVVPTLFC-APGARLLARLSGARTWLHIQDYEVDAAFGLGLLKG 154 (412)
T ss_pred ccHHHHHHHHHH-HHHHHHHHH--hhccCCCCCEEEEeCCcHHH-HHHHHHHHHhhCCCEEEEeccCCHHHHHHhCCccC
Confidence 111111111111 111100011 11112689999999865443 335667788888999999999753221 1111133
Q ss_pred chHHHHHHHHHHHHhhhcCEEEEeCHHHHHHHHHHhCC---ceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCc
Q 011969 150 SHFVSIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGI---KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGV 225 (474)
Q Consensus 150 ~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~---~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~ 225 (474)
+.+.++..++++.+++.||.++++|+.+++.+.+. +. ++.+++|+.+ +.|.+........++++++
T Consensus 155 ~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~-~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~--------- 224 (412)
T PRK10307 155 GKVARLATAFERSLLRRFDNVSTISRSMMNKAREK-GVAAEKVIFFPNWSEVARFQPVADADVDALRAQLG--------- 224 (412)
T ss_pred cHHHHHHHHHHHHHHhhCCEEEecCHHHHHHHHHc-CCCcccEEEECCCcCHhhcCCCCccchHHHHHHcC---------
Confidence 44556677889999999999999999999998764 43 3889999954 5565543222233444544
Q ss_pred cccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHh
Q 011969 226 QDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLK 305 (474)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~ 305 (474)
+ ++.+.+++|+|++.+.||++.|++|++.+.+
T Consensus 225 ----------------------------~-~~~~~~i~~~G~l~~~kg~~~li~a~~~l~~------------------- 256 (412)
T PRK10307 225 ----------------------------L-PDGKKIVLYSGNIGEKQGLELVIDAARRLRD------------------- 256 (412)
T ss_pred ----------------------------C-CCCCEEEEEcCccccccCHHHHHHHHHHhcc-------------------
Confidence 2 2233489999999999999999999988744
Q ss_pred hhcCCccccCCCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCC-CCCCCchHHHH
Q 011969 306 EISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPMKVVD 384 (474)
Q Consensus 306 ~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s-~~e~~p~kv~E 384 (474)
.++++|+|+|+|+..+++++.++++++++|.|+|. ++.+++..+|+.||++++|.... .+..+|++++|
T Consensus 257 ---------~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~-~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~e 326 (412)
T PRK10307 257 ---------RPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPL-QPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTN 326 (412)
T ss_pred ---------CCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCC-CCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHH
Confidence 47899999999999999999999999988999997 99999999999999999953221 11227999999
Q ss_pred HHhcCCcEEEecccc--cccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHH
Q 011969 385 MFGCGLPVCAVSYSC--IEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEE 459 (474)
Q Consensus 385 ama~G~PVia~~~~~--~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~ 459 (474)
|||||+|||+++.++ +.+++. ++|++++ |+++++++|.+++++ ++.+++|++++++.. +.++|+...++
T Consensus 327 ama~G~PVi~s~~~g~~~~~~i~--~~G~~~~~~d~~~la~~i~~l~~~----~~~~~~~~~~a~~~~~~~fs~~~~~~~ 400 (412)
T PRK10307 327 MLASGRNVVATAEPGTELGQLVE--GIGVCVEPESVEALVAAIAALARQ----ALLRPKLGTVAREYAERTLDKENVLRQ 400 (412)
T ss_pred HHHcCCCEEEEeCCCchHHHHHh--CCcEEeCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 999999999998765 457776 6899985 799999999999984 889999999999876 46899887766
Q ss_pred HHHHH
Q 011969 460 HAKPL 464 (474)
Q Consensus 460 ~~~~~ 464 (474)
..+.+
T Consensus 401 ~~~~~ 405 (412)
T PRK10307 401 FIADI 405 (412)
T ss_pred HHHHH
Confidence 54433
No 5
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=2e-35 Score=306.88 Aligned_cols=367 Identities=17% Similarity=0.167 Sum_probs=262.1
Q ss_pred CCCCCch-HHHHHHHHHhhCCCeEEEEecCCCCCC-cceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 011969 14 DLGRSPR-MQYQALSLARQMSLEVDVVAYGGSKPH-AAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFML 91 (474)
Q Consensus 14 ~~g~~~r-~~~~a~~l~~~~g~eV~Vv~~~~~~~~-~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (474)
+.||..+ +...+..|.++ ||+|+|+|....... ......+|+++++++..+.......+++..+. .+... +
T Consensus 18 ~~GG~e~~v~~la~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~---~ 90 (405)
T TIGR03449 18 DAGGMNVYILETATELARR-GIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPYEGLDKEDLPTQLC---AFTGG---V 90 (405)
T ss_pred CCCCceehHHHHHHHHhhC-CCEEEEEecccCCCCCCccccCCCcEEEEecCCCcccCCHHHHHHHHH---HHHHH---H
Confidence 3566544 55667888886 999999997643211 12223469999988722211111111111111 11111 1
Q ss_pred HHHHhhh-cCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccC-CCchHHHHHHHHHHHHhhhcCE
Q 011969 92 LWFLCVK-IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLG-RRSHFVSIYRWIEKYYGKMANG 169 (474)
Q Consensus 92 ~~~~~~~-~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~~~ad~ 169 (474)
+...+.+ ..+||+||+|. .....+++++++..++|+|+++|+.+.... .... ...+.....+++++.+.+.+|.
T Consensus 91 ~~~~~~~~~~~~Diih~h~---~~~~~~~~~~~~~~~~p~v~t~h~~~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~~d~ 166 (405)
T TIGR03449 91 LRAEARHEPGYYDLIHSHY---WLSGQVGWLLRDRWGVPLVHTAHTLAAVKN-AALADGDTPEPEARRIGEQQLVDNADR 166 (405)
T ss_pred HHHHhhccCCCCCeEEech---HHHHHHHHHHHHhcCCCEEEeccchHHHHH-HhccCCCCCchHHHHHHHHHHHHhcCe
Confidence 1122221 24799999998 333445677777889999999998742111 0111 1112223445678888899999
Q ss_pred EEEeCHHHHHHHHHHhCC---ceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhh
Q 011969 170 CLCVTQAMQHELAQNWGI---KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFT 245 (474)
Q Consensus 170 vi~vS~~~~~~l~~~~~~---~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (474)
++++|+..++.+.+.++. ++.+++||.+ +.|.+.. +...+.+++
T Consensus 167 vi~~s~~~~~~~~~~~~~~~~ki~vi~ngvd~~~~~~~~---~~~~~~~~~----------------------------- 214 (405)
T TIGR03449 167 LIANTDEEARDLVRHYDADPDRIDVVAPGADLERFRPGD---RATERARLG----------------------------- 214 (405)
T ss_pred EEECCHHHHHHHHHHcCCChhhEEEECCCcCHHHcCCCc---HHHHHHhcC-----------------------------
Confidence 999999988888776664 3789999954 5565442 222333443
Q ss_pred cccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCC--EEEEEE
Q 011969 246 SLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPR--LLFIIT 323 (474)
Q Consensus 246 ~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~iv 323 (474)
++++. .+++|+|++.+.||++.+++|+..+.++ .|+ ++|+|+
T Consensus 215 --------~~~~~-~~i~~~G~l~~~K~~~~li~a~~~l~~~---------------------------~~~~~~~l~iv 258 (405)
T TIGR03449 215 --------LPLDT-KVVAFVGRIQPLKAPDVLLRAVAELLDR---------------------------DPDRNLRVIVV 258 (405)
T ss_pred --------CCCCC-cEEEEecCCCcccCHHHHHHHHHHHHhh---------------------------CCCcceEEEEE
Confidence 22333 3899999999999999999999988663 455 999999
Q ss_pred eC----C-CChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc
Q 011969 324 GK----G-PDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 397 (474)
Q Consensus 324 G~----g-~~~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~ 397 (474)
|+ | +..+++++.++++++ ++|.|+|. ++.+++..+|+.||++++ ||..|++|++++|||+||+|||+++.
T Consensus 259 G~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~-~~~~~~~~~l~~ad~~v~---ps~~E~~g~~~lEAma~G~Pvi~~~~ 334 (405)
T TIGR03449 259 GGPSGSGLATPDALIELAAELGIADRVRFLPP-RPPEELVHVYRAADVVAV---PSYNESFGLVAMEAQACGTPVVAARV 334 (405)
T ss_pred eCCCCCcchHHHHHHHHHHHcCCCceEEECCC-CCHHHHHHHHHhCCEEEE---CCCCCCcChHHHHHHHcCCCEEEecC
Confidence 96 3 455778899999998 68999998 999999999999999999 57789999999999999999999999
Q ss_pred cccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Q 011969 398 SCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEV 468 (474)
Q Consensus 398 ~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 468 (474)
++..|++.++.+|++++ |+++++++|.+++++ ++.+++|++++++..++++|+..-+++. .+++++
T Consensus 335 ~~~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~----~~~~~~~~~~~~~~~~~fsw~~~~~~~~-~~y~~~ 402 (405)
T TIGR03449 335 GGLPVAVADGETGLLVDGHDPADWADALARLLDD----PRTRIRMGAAAVEHAAGFSWAATADGLL-SSYRDA 402 (405)
T ss_pred CCcHhhhccCCceEECCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHH
Confidence 99999999999999996 799999999999984 8889999999998877899987766544 344443
No 6
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=7.7e-36 Score=317.42 Aligned_cols=353 Identities=19% Similarity=0.239 Sum_probs=254.4
Q ss_pred CchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 011969 18 SPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCV 97 (474)
Q Consensus 18 ~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (474)
..|+...+..|.++ ||+|+|++.....+. ...+++++....++.+. .......+....+ ++..+
T Consensus 77 ~~~~~~l~~~L~~~-G~eV~vlt~~~~~~~----~~~g~~v~~~~~~~~~~--~~~~~~~~~~~~~--------l~~~i- 140 (465)
T PLN02871 77 KNRFQNFIRYLREM-GDEVLVVTTDEGVPQ----EFHGAKVIGSWSFPCPF--YQKVPLSLALSPR--------IISEV- 140 (465)
T ss_pred HHHHHHHHHHHHHC-CCeEEEEecCCCCCc----cccCceeeccCCcCCcc--CCCceeeccCCHH--------HHHHH-
Confidence 45677777888886 999999997654321 22366665544221111 1111100000000 11112
Q ss_pred hcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHH
Q 011969 98 KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAM 177 (474)
Q Consensus 98 ~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~ 177 (474)
+..+||+||+|++... ...+.++++..++|+|++.|+....... .. ....+.+....+++.+.+.+|.++++|+.+
T Consensus 141 ~~~kpDiIh~~~~~~~--~~~~~~~ak~~~ip~V~~~h~~~~~~~~-~~-~~~~~~~~~~~~~r~~~~~ad~ii~~S~~~ 216 (465)
T PLN02871 141 ARFKPDLIHASSPGIM--VFGALFYAKLLCVPLVMSYHTHVPVYIP-RY-TFSWLVKPMWDIIRFLHRAADLTLVTSPAL 216 (465)
T ss_pred HhCCCCEEEECCCchh--HHHHHHHHHHhCCCEEEEEecCchhhhh-cc-cchhhHHHHHHHHHHHHhhCCEEEECCHHH
Confidence 2278999999986432 2234455667789999999976322111 01 112222223456788889999999999999
Q ss_pred HHHHHHHh---CCceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccc
Q 011969 178 QHELAQNW---GIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVF 253 (474)
Q Consensus 178 ~~~l~~~~---~~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (474)
++.+.+.. ..++.+++||.+ +.|.|... ....+.++. .
T Consensus 217 ~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~--~~~~~~~~~------------------------------------~ 258 (465)
T PLN02871 217 GKELEAAGVTAANRIRVWNKGVDSESFHPRFR--SEEMRARLS------------------------------------G 258 (465)
T ss_pred HHHHHHcCCCCcCeEEEeCCccCccccCCccc--cHHHHHHhc------------------------------------C
Confidence 99998764 234889999954 66766432 122233322 0
Q ss_pred cCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHH
Q 011969 254 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 333 (474)
Q Consensus 254 ~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~ 333 (474)
..++++ +++|+|++.+.||++.++++++.+ ++++|+|+|+|+..++++
T Consensus 259 ~~~~~~-~i~~vGrl~~~K~~~~li~a~~~~-------------------------------~~~~l~ivG~G~~~~~l~ 306 (465)
T PLN02871 259 GEPEKP-LIVYVGRLGAEKNLDFLKRVMERL-------------------------------PGARLAFVGDGPYREELE 306 (465)
T ss_pred CCCCCe-EEEEeCCCchhhhHHHHHHHHHhC-------------------------------CCcEEEEEeCChHHHHHH
Confidence 112333 789999999999999999988763 679999999999888887
Q ss_pred HHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccccccccccc---CCcE
Q 011969 334 EKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKV---DKNG 410 (474)
Q Consensus 334 ~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~---~~~G 410 (474)
+.++. .+|.|+|. ++.+++..+|+.||++|+ +|..|++|++++||||||+|||+++.+++.|++.+ +.+|
T Consensus 307 ~~~~~---~~V~f~G~-v~~~ev~~~~~~aDv~V~---pS~~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G 379 (465)
T PLN02871 307 KMFAG---TPTVFTGM-LQGDELSQAYASGDVFVM---PSESETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTG 379 (465)
T ss_pred HHhcc---CCeEEecc-CCHHHHHHHHHHCCEEEE---CCcccccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCce
Confidence 77664 37999998 999999999999999999 67789999999999999999999999999999998 9999
Q ss_pred EEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhc
Q 011969 411 LLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEVISQ 471 (474)
Q Consensus 411 ~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 471 (474)
++++ |+++++++|..++++ ++.+++|++++++...+++|+...+++.+.++.+++..
T Consensus 380 ~lv~~~d~~~la~~i~~ll~~----~~~~~~~~~~a~~~~~~fsw~~~a~~l~~~~Y~~~~~~ 438 (465)
T PLN02871 380 FLYTPGDVDDCVEKLETLLAD----PELRERMGAAAREEVEKWDWRAATRKLRNEQYSAAIWF 438 (465)
T ss_pred EEeCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9996 799999999999984 88999999999998888999998888777666766554
No 7
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=4.4e-35 Score=300.84 Aligned_cols=357 Identities=18% Similarity=0.192 Sum_probs=256.9
Q ss_pred CCceEEEEEeCCCCCCchHHHH-HHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHH
Q 011969 3 RRGRACVVVLGDLGRSPRMQYQ-ALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLL 81 (474)
Q Consensus 3 ~~~~~~i~~~~~~g~~~r~~~~-a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~ 81 (474)
++++++|+...+.||..++... +..|.++ |+++.|++..............|+++++++. . .. .....+..+
T Consensus 1 ~~~il~ii~~~~~GG~e~~~~~l~~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~--~---~~-~~~~~~~~l 73 (374)
T TIGR03088 1 RPLIVHVVYRFDVGGLENGLVNLINHLPAD-RYRHAVVALTEVSAFRKRIQRPDVAFYALHK--Q---PG-KDVAVYPQL 73 (374)
T ss_pred CceEEEEeCCCCCCcHHHHHHHHHhhcccc-ccceEEEEcCCCChhHHHHHhcCceEEEeCC--C---CC-CChHHHHHH
Confidence 3567778888888998887755 4556665 9999999865433333334456899988872 1 11 111222222
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcE-EEEecCchhhhhhhccCCCchHHHHHHHHH
Q 011969 82 LKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAF-IVDWHNFGYTLLSLSLGRRSHFVSIYRWIE 160 (474)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e 160 (474)
.+.+ +..+||+||+|++... .+.+++++.+.|. +++.|+... .........+.+++
T Consensus 74 ~~~l------------~~~~~Divh~~~~~~~----~~~~~~~~~~~~~~i~~~h~~~~-------~~~~~~~~~~~~~~ 130 (374)
T TIGR03088 74 YRLL------------RQLRPDIVHTRNLAAL----EAQLPAALAGVPARIHGEHGRDV-------FDLDGSNWKYRWLR 130 (374)
T ss_pred HHHH------------HHhCCCEEEEcchhHH----HHHHHHHhcCCCeEEEeecCccc-------ccchhhHHHHHHHH
Confidence 2222 2278999999984322 2334455556664 445564311 01111112345677
Q ss_pred HHHhhhcCEEEEeCHHHHHHHHHHhCCc---eEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCC
Q 011969 161 KYYGKMANGCLCVTQAMQHELAQNWGIK---ATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEG 236 (474)
Q Consensus 161 ~~~~~~ad~vi~vS~~~~~~l~~~~~~~---~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 236 (474)
+.+.+.+|.++++|+.+++++.+.++.+ +.+++|+.+ +.|.+..... ...+...
T Consensus 131 ~~~~~~~~~~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~-~~~~~~~--------------------- 188 (374)
T TIGR03088 131 RLYRPLIHHYVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDR-SPILPPD--------------------- 188 (374)
T ss_pred HHHHhcCCeEEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCccch-hhhhHhh---------------------
Confidence 7777889999999999999998876643 789999954 5565542111 1111111
Q ss_pred cCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCC
Q 011969 237 QKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYP 316 (474)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (474)
..++.+.+++|+|++.+.||++.+++|+..+.++. +...+
T Consensus 189 -----------------~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~-----------------------~~~~~ 228 (374)
T TIGR03088 189 -----------------FFADESVVVGTVGRLQAVKDQPTLVRAFALLVRQL-----------------------PEGAE 228 (374)
T ss_pred -----------------cCCCCCeEEEEEecCCcccCHHHHHHHHHHHHHhC-----------------------ccccc
Confidence 11233458999999999999999999999886630 00124
Q ss_pred CEEEEEEeCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEe
Q 011969 317 RLLFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 395 (474)
Q Consensus 317 ~~~l~ivG~g~~~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~ 395 (474)
+++|+++|+|+..+++++.++++++ ++|.|.|. .+|+..+|+.||++++ ||..|++|++++|||+||+|||++
T Consensus 229 ~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~adi~v~---pS~~Eg~~~~~lEAma~G~Pvv~s 302 (374)
T TIGR03088 229 RLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGE---RDDVPALMQALDLFVL---PSLAEGISNTILEAMASGLPVIAT 302 (374)
T ss_pred ceEEEEecCCchHHHHHHHHHHcCCcceEEEcCC---cCCHHHHHHhcCEEEe---ccccccCchHHHHHHHcCCCEEEc
Confidence 7999999999998999999999998 57888886 7899999999999999 688899999999999999999999
Q ss_pred cccccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHH
Q 011969 396 SYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHA 461 (474)
Q Consensus 396 ~~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~ 461 (474)
+.++..|++.++.+|++++ |+++++++|..++++ ++.++++++++++.. ..++|+...+++.
T Consensus 303 ~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~----~~~~~~~~~~a~~~~~~~fs~~~~~~~~~ 367 (374)
T TIGR03088 303 AVGGNPELVQHGVTGALVPPGDAVALARALQPYVSD----PAARRAHGAAGRARAEQQFSINAMVAAYA 367 (374)
T ss_pred CCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999995 799999999999884 888899999998875 5788988765543
No 8
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=1.2e-34 Score=301.71 Aligned_cols=352 Identities=13% Similarity=0.075 Sum_probs=247.0
Q ss_pred CCCCCCch-HHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 011969 13 GDLGRSPR-MQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFML 91 (474)
Q Consensus 13 ~~~g~~~r-~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (474)
...||..| +...+..|+++ ||+|+|++..............|+++++++.... .....+...+... ..+.
T Consensus 11 p~~GG~e~~~~~la~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~~~~--~~~~~~~~~~~~~-~~l~----- 81 (398)
T cd03796 11 PNLGGVETHIYQLSQCLIKR-GHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVVF--YNQSTLPTFFGTF-PLLR----- 81 (398)
T ss_pred cccccHHHHHHHHHHHHHHc-CCeeEEEeccCCcCCCcccccCceeEEEecceec--cCCccccchhhhH-HHHH-----
Confidence 34566555 55667888886 9999999965332221223345899988873221 1111111111111 1111
Q ss_pred HHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEE
Q 011969 92 LWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCL 171 (474)
Q Consensus 92 ~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi 171 (474)
..+ +..+||+||+|++..... ..+.++++..++|+|++.|+... ..........++.+...+.+|.++
T Consensus 82 --~~~-~~~~~DiIh~~~~~~~~~-~~~~~~~~~~~~~~v~t~h~~~~--------~~~~~~~~~~~~~~~~~~~~d~ii 149 (398)
T cd03796 82 --NIL-IRERITIVHGHQAFSALA-HEALLHARTMGLKTVFTDHSLFG--------FADASSIHTNKLLRFSLADVDHVI 149 (398)
T ss_pred --HHH-HhcCCCEEEECCCCchHH-HHHHHHhhhcCCcEEEEeccccc--------ccchhhHHhhHHHHHhhccCCEEE
Confidence 111 227899999998644322 23555667788999999998621 111111223456677788999999
Q ss_pred EeCHHHHHHHHHHhCC---ceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcc
Q 011969 172 CVTQAMQHELAQNWGI---KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSL 247 (474)
Q Consensus 172 ~vS~~~~~~l~~~~~~---~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (474)
++|+..++.+....+. ++.++|||.+ +.|.+....
T Consensus 150 ~~s~~~~~~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~----------------------------------------- 188 (398)
T cd03796 150 CVSHTSKENTVLRASLDPERVSVIPNAVDSSDFTPDPSK----------------------------------------- 188 (398)
T ss_pred EecHhHhhHHHHHhCCChhhEEEEcCccCHHHcCCCccc-----------------------------------------
Confidence 9999998765443333 3789999854 445443210
Q ss_pred cccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCC
Q 011969 248 AGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP 327 (474)
Q Consensus 248 ~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~ 327 (474)
..+...+++|+|++.+.||++.|++|++.+.+. .|+++|+|+|+|+
T Consensus 189 -------~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~---------------------------~~~~~l~i~G~g~ 234 (398)
T cd03796 189 -------RDNDKITIVVISRLVYRKGIDLLVGIIPEICKK---------------------------HPNVRFIIGGDGP 234 (398)
T ss_pred -------CCCCceEEEEEeccchhcCHHHHHHHHHHHHhh---------------------------CCCEEEEEEeCCc
Confidence 012334899999999999999999999988763 6899999999999
Q ss_pred ChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccccccccccc
Q 011969 328 DKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKV 406 (474)
Q Consensus 328 ~~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~ 406 (474)
..+.+++.++++++ ++|.|.|. ++.+++..+|+.||++++ +|..|++|++++||||||+|||+++.++..|++.+
T Consensus 235 ~~~~l~~~~~~~~l~~~v~~~G~-~~~~~~~~~l~~ad~~v~---pS~~E~~g~~~~EAma~G~PVI~s~~gg~~e~i~~ 310 (398)
T cd03796 235 KRILLEEMREKYNLQDRVELLGA-VPHERVRDVLVQGHIFLN---TSLTEAFCIAIVEAASCGLLVVSTRVGGIPEVLPP 310 (398)
T ss_pred hHHHHHHHHHHhCCCCeEEEeCC-CCHHHHHHHHHhCCEEEe---CChhhccCHHHHHHHHcCCCEEECCCCCchhheeC
Confidence 99999999999999 68999998 999999999999999999 67789999999999999999999999999999977
Q ss_pred CCcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hccccchHHHHHHHHHHHHHHHh
Q 011969 407 DKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLE-MGLSARWATEWEEHAKPLITEVI 469 (474)
Q Consensus 407 ~~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~ 469 (474)
+..++..+|+++++++|.+++++ ......+++++.+ ..++++|+...+++.+ ++++++
T Consensus 311 ~~~~~~~~~~~~l~~~l~~~l~~----~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~-~y~~l~ 369 (398)
T cd03796 311 DMILLAEPDVESIVRKLEEAISI----LRTGKHDPWSFHNRVKKMYSWEDVAKRTEK-VYDRIL 369 (398)
T ss_pred CceeecCCCHHHHHHHHHHHHhC----hhhhhhHHHHHHHHHHhhCCHHHHHHHHHH-HHHHHh
Confidence 65444445899999999999985 3333345555544 3457999888777553 334433
No 9
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=1.3e-34 Score=298.29 Aligned_cols=364 Identities=18% Similarity=0.228 Sum_probs=251.9
Q ss_pred ceEEEEEeCCCCCCchH-HHHHHHHHhhCCCeEEEEecCCCCCCc-ceeccCCeEEEEeecCCCCCCCCCchhHHHHHHH
Q 011969 5 GRACVVVLGDLGRSPRM-QYQALSLARQMSLEVDVVAYGGSKPHA-AILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLL 82 (474)
Q Consensus 5 ~~~~i~~~~~~g~~~r~-~~~a~~l~~~~g~eV~Vv~~~~~~~~~-~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~ 82 (474)
|++++...-..||+.|+ ...|.+|+++ ||+|+|+|........ ......++.++....+. +.. ....+..+.
T Consensus 2 kIl~~~~~~~~gG~e~~~~~la~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~---~~~~~~~~~ 75 (392)
T cd03805 2 RVAFIHPDLGIGGAERLVVDAALALQSR-GHEVTIYTSHHDPSHCFEETKDGTLPVRVRGDWL--PRS---IFGRFHILC 75 (392)
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHhC-CCeEEEEcCCCCchhcchhccCCeeEEEEEeEEE--cch---hhHhHHHHH
Confidence 44555444456887776 5678889886 9999999965332111 11122236665554211 111 111111111
Q ss_pred HHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchH----HHHHHH
Q 011969 83 KPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHF----VSIYRW 158 (474)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~----~~~~~~ 158 (474)
..+.......+....+..++|+||+++.. .. ..++....+.|+++++|.... .. ..+.+.. .....+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~---~~--~~~~~~~~~~~~i~~~h~~~~-~~---~~~~~~~~~~~~~~~~~ 146 (392)
T cd03805 76 AYLRMLYLALYLLLLPDEKYDVFIVDQVS---AC--VPLLKLFSPSKILFYCHFPDQ-LL---AQRGSLLKRLYRKPFDW 146 (392)
T ss_pred HHHHHHHHHHHHHhcccCCCCEEEEcCcc---hH--HHHHHHhcCCcEEEEEecChH-Hh---cCCCcHHHHHHHHHHHH
Confidence 11221111111112344799999998732 22 122233444889999995421 11 1122222 234567
Q ss_pred HHHHHhhhcCEEEEeCHHHHHHHHHHhCC---c-eEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccc
Q 011969 159 IEKYYGKMANGCLCVTQAMQHELAQNWGI---K-ATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAG 233 (474)
Q Consensus 159 ~e~~~~~~ad~vi~vS~~~~~~l~~~~~~---~-~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 233 (474)
+|+..++.||.++++|+.+++.+.+.++. + ..+++|+.+ +.|.+..... ....
T Consensus 147 ~e~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~---~~~~------------------- 204 (392)
T cd03805 147 LEEFTTGMADKIVVNSNFTASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDP---DPGL------------------- 204 (392)
T ss_pred HHHHHhhCceEEEEcChhHHHHHHHHhcccccCCcceeCCCcCHHHcCcccccc---cccc-------------------
Confidence 89999999999999999999988876542 2 358999844 4554432110 0000
Q ss_pred cCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccc
Q 011969 234 MEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQY 313 (474)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (474)
....+...+++|+|++.+.||++.+++|+..+.++
T Consensus 205 -------------------~~~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~-------------------------- 239 (392)
T cd03805 205 -------------------LIPKSGKKTFLSINRFERKKNIALAIEAFAILKDK-------------------------- 239 (392)
T ss_pred -------------------cccCCCceEEEEEeeecccCChHHHHHHHHHHHhh--------------------------
Confidence 01123334899999999999999999999998773
Q ss_pred cC---CCEEEEEEeCCCCh--------HHHHHHHHH-cCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCch
Q 011969 314 LY---PRLLFIITGKGPDK--------ESYEEKIRR-LRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPM 380 (474)
Q Consensus 314 ~~---~~~~l~ivG~g~~~--------~~~~~~~~~-l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~ 380 (474)
. |+++|+|+|+|+.. +++++.+++ +++ ++|.|+|. ++.+++..+|+.||++++ +|..|+||+
T Consensus 240 -~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~-~~~~~~~~~l~~ad~~l~---~s~~E~~g~ 314 (392)
T cd03805 240 -LAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPS-ISDSQKELLLSSARALLY---TPSNEHFGI 314 (392)
T ss_pred -cccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCC-CChHHHHHHHhhCeEEEE---CCCcCCCCc
Confidence 3 78999999998753 678888888 888 79999998 999999999999999999 677899999
Q ss_pred HHHHHHhcCCcEEEecccccccccccCCcEEEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHH
Q 011969 381 KVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWE 458 (474)
Q Consensus 381 kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~ 458 (474)
+++||||||+|||+++.++..|++.++.+|++++ |+++++++|..++++ ++.+++|++++++.. ..++|+...+
T Consensus 315 ~~lEAma~G~PvI~s~~~~~~e~i~~~~~g~~~~~~~~~~a~~i~~l~~~----~~~~~~~~~~a~~~~~~~~s~~~~~~ 390 (392)
T cd03805 315 VPLEAMYAGKPVIACNSGGPLETVVDGETGFLCEPTPEEFAEAMLKLAND----PDLADRMGAAGRKRVKEKFSTEAFAE 390 (392)
T ss_pred hHHHHHHcCCCEEEECCCCcHHHhccCCceEEeCCCHHHHHHHHHHHHhC----hHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 9999999999999999999999999999999986 799999999999985 778899999998865 5688877554
Q ss_pred H
Q 011969 459 E 459 (474)
Q Consensus 459 ~ 459 (474)
+
T Consensus 391 ~ 391 (392)
T cd03805 391 R 391 (392)
T ss_pred h
Confidence 3
No 10
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.5e-33 Score=287.24 Aligned_cols=353 Identities=18% Similarity=0.221 Sum_probs=250.5
Q ss_pred eEEEEEeCCCCCCchHHH-HHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHH
Q 011969 6 RACVVVLGDLGRSPRMQY-QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKP 84 (474)
Q Consensus 6 ~~~i~~~~~~g~~~r~~~-~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (474)
+++++....+||.+++.. .+..|.++ ||+|+|++...... .....+++.++.++.... ........... ..+
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~-G~~v~v~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~- 74 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARR-GHEVHFITSSRPFR--LDEYSPNIFFHEVEVPQY--PLFQYPPYDLA-LAS- 74 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhc-CCceEEEecCCCcc--hhhhccCeEEEEeccccc--chhhcchhHHH-HHH-
Confidence 356666777888888665 45777776 99999999764221 112234666655441110 00000001010 011
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhh---CCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHH
Q 011969 85 LIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSL---RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEK 161 (474)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~ 161 (474)
.+...+ +..+||+||+|.+. +....+.++.++ .++|+|++.|+...... ... ..++++++
T Consensus 75 ------~l~~~i-~~~~~divh~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~----~~~----~~~~~~~~ 137 (371)
T cd04962 75 ------KIAEVA-KRYKLDLLHVHYAV--PHAVAAYLAREILGKKDLPVVTTLHGTDITLV----GQD----PSFQPATR 137 (371)
T ss_pred ------HHHHHH-hcCCccEEeecccC--CccHHHHHHHHhcCcCCCcEEEEEcCCccccc----ccc----ccchHHHH
Confidence 111222 23799999998742 222223333332 37899999997632111 111 11235667
Q ss_pred HHhhhcCEEEEeCHHHHHHHHHHhC--CceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcC
Q 011969 162 YYGKMANGCLCVTQAMQHELAQNWG--IKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQK 238 (474)
Q Consensus 162 ~~~~~ad~vi~vS~~~~~~l~~~~~--~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (474)
...+.+|.++++|+.+++.+.+.++ .++.+++|+.+ ..|.+... ...+.+++
T Consensus 138 ~~~~~~d~ii~~s~~~~~~~~~~~~~~~~i~vi~n~~~~~~~~~~~~---~~~~~~~~---------------------- 192 (371)
T cd04962 138 FSIEKSDGVTAVSESLRQETYELFDITKEIEVIPNFVDEDRFRPKPD---EALKRRLG---------------------- 192 (371)
T ss_pred HHHhhCCEEEEcCHHHHHHHHHhcCCcCCEEEecCCcCHhhcCCCch---HHHHHhcC----------------------
Confidence 7788999999999999998887653 34889999854 33433321 12222332
Q ss_pred cchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCE
Q 011969 239 ADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRL 318 (474)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (474)
..++ ..+++|+|++.+.||++.+++++..+.+ .+++
T Consensus 193 ---------------~~~~-~~~il~~g~l~~~K~~~~li~a~~~l~~----------------------------~~~~ 228 (371)
T cd04962 193 ---------------APEG-EKVLIHISNFRPVKRIDDVIRIFAKVRK----------------------------EVPA 228 (371)
T ss_pred ---------------CCCC-CeEEEEecccccccCHHHHHHHHHHHHh----------------------------cCCc
Confidence 2233 3489999999999999999999998866 2468
Q ss_pred EEEEEeCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc
Q 011969 319 LFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 397 (474)
Q Consensus 319 ~l~ivG~g~~~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~ 397 (474)
+|+|+|.|++.+.+++.++++++ ++|.|.|. .+++..+|+.||++++ ||..|++|++++|||+||+|||+++.
T Consensus 229 ~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~~d~~v~---ps~~E~~~~~~~EAma~g~PvI~s~~ 302 (371)
T cd04962 229 RLLLVGDGPERSPAERLARELGLQDDVLFLGK---QDHVEELLSIADLFLL---PSEKESFGLAALEAMACGVPVVASNA 302 (371)
T ss_pred eEEEEcCCcCHHHHHHHHHHcCCCceEEEecC---cccHHHHHHhcCEEEe---CCCcCCCccHHHHHHHcCCCEEEeCC
Confidence 99999999999999999999988 68999997 5789999999999999 57789999999999999999999999
Q ss_pred cccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-ccccchHHHHHHHH
Q 011969 398 SCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM-GLSARWATEWEEHA 461 (474)
Q Consensus 398 ~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~ 461 (474)
++..|++.++.+|++++ |++++++++..++++ ++.+++|++++++. .+.++|+...+++.
T Consensus 303 ~~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~~----~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 365 (371)
T cd04962 303 GGIPEVVKHGETGFLVDVGDVEAMAEYALSLLED----DELWQEFSRAARNRAAERFDSERIVPQYE 365 (371)
T ss_pred CCchhhhcCCCceEEcCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999996 799999999999984 88999999999987 46788887665533
No 11
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=2.4e-33 Score=296.36 Aligned_cols=366 Identities=19% Similarity=0.142 Sum_probs=239.8
Q ss_pred CCCCc-hHHHHHHHHHhhCCC--eEEEEecCCCC-------CCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHH
Q 011969 15 LGRSP-RMQYQALSLARQMSL--EVDVVAYGGSK-------PHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKP 84 (474)
Q Consensus 15 ~g~~~-r~~~~a~~l~~~~g~--eV~Vv~~~~~~-------~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (474)
.||.. ++...+..|+++ || +|+|+|..... ........+|+++++++..+ ..... .......+..+
T Consensus 25 ~GG~~~~v~~La~~L~~~-G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~--~~~~~-~~~~~~~~~~~ 100 (439)
T TIGR02472 25 TGGQTKYVLELARALARR-SEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGP--RRYLR-KELLWPYLDEL 100 (439)
T ss_pred CCCcchHHHHHHHHHHhC-CCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCC--CCCcC-hhhhhhhHHHH
Confidence 34433 455667888886 97 99999953211 11122235799999998322 11111 11111111111
Q ss_pred HHHHHHHHHHHhhh-cCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhcc--C-CCchHHHHH----
Q 011969 85 LIQFFMLLWFLCVK-IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSL--G-RRSHFVSIY---- 156 (474)
Q Consensus 85 ~~~~~~~~~~~~~~-~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~--~-~~~~~~~~~---- 156 (474)
... +.. .+.+ ..+||+||+|++ ....++.++++..++|+|++.|+.+........ + ....+...+
T Consensus 101 ~~~---l~~-~~~~~~~~~DvIH~h~~---~~~~~~~~~~~~~~~p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (439)
T TIGR02472 101 ADN---LLQ-HLRQQGHLPDLIHAHYA---DAGYVGARLSRLLGVPLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISR 173 (439)
T ss_pred HHH---HHH-HHHHcCCCCCEEEEcch---hHHHHHHHHHHHhCCCEEEecccccchhhhhcccCCCChhhhhhhcchHH
Confidence 111 111 1222 247999999983 344456777778889999999986421110000 0 001111111
Q ss_pred -HHHHHHHhhhcCEEEEeCHHHHHHHHHHh-C---CceEEEeCCC-CCCCCCCChH-HHHHHHHhhhhccCCCCCccccc
Q 011969 157 -RWIEKYYGKMANGCLCVTQAMQHELAQNW-G---IKATVLYDQP-PEFFHPTSLE-EKHELFCRLNKILHQPLGVQDCV 229 (474)
Q Consensus 157 -~~~e~~~~~~ad~vi~vS~~~~~~l~~~~-~---~~~~vi~n~~-~~~f~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~ 229 (474)
...++..++.+|.++++|..........+ + .++.+||||. .+.|.|.... ....++..+..
T Consensus 174 ~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~------------ 241 (439)
T TIGR02472 174 RIEAEEETLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAP------------ 241 (439)
T ss_pred HHHHHHHHHHhCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHHHh------------
Confidence 12477888999999999976544333222 2 3488999994 4667664321 11112111110
Q ss_pred cccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcC
Q 011969 230 SNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISD 309 (474)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (474)
....++.+ +++|+|++.+.||++.|++|++.+.+.
T Consensus 242 ----------------------~~~~~~~~-~i~~vGrl~~~Kg~~~li~A~~~l~~~---------------------- 276 (439)
T TIGR02472 242 ----------------------FLKDPEKP-PILAISRPDRRKNIPSLVEAYGRSPKL---------------------- 276 (439)
T ss_pred ----------------------hccccCCc-EEEEEcCCcccCCHHHHHHHHHhChhh----------------------
Confidence 00123334 899999999999999999999875321
Q ss_pred CccccCCCEEEEEEeCCCChHH-----------HHHHHHHcCC-CcEEEecCCCCcccHHHHHhcc----cEEEeeccCC
Q 011969 310 GKQYLYPRLLFIITGKGPDKES-----------YEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSA----DLGVCLHTSS 373 (474)
Q Consensus 310 ~~~~~~~~~~l~ivG~g~~~~~-----------~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~a----dv~v~~~~~s 373 (474)
+ ..+++. +|+|+|++.+. +.+.++++++ ++|.|.|. ++.++++.+|+.| |++|+ ||
T Consensus 277 -~--~~~~l~-li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~-~~~~~~~~~~~~a~~~~Dv~v~---pS 348 (439)
T TIGR02472 277 -Q--EMANLV-LVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKH-HRPDDVPELYRLAARSRGIFVN---PA 348 (439)
T ss_pred -h--hhccEE-EEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCC-CCHHHHHHHHHHHhhcCCEEec---cc
Confidence 0 023443 36788775322 3445677888 78999998 8999999999987 99999 68
Q ss_pred CCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cc
Q 011969 374 SGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LS 450 (474)
Q Consensus 374 ~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~ 450 (474)
..|+||++++||||||+|||+|+.+++.|++.++.+|++++ |+++++++|..++++ ++.+++|++++++.. +.
T Consensus 349 ~~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~~----~~~~~~~~~~a~~~~~~~ 424 (439)
T TIGR02472 349 LTEPFGLTLLEAAACGLPIVATDDGGPRDIIANCRNGLLVDVLDLEAIASALEDALSD----SSQWQLWSRNGIEGVRRH 424 (439)
T ss_pred ccCCcccHHHHHHHhCCCEEEeCCCCcHHHhcCCCcEEEeCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999986 799999999999984 888999999998754 57
Q ss_pred cchHHHHHHH
Q 011969 451 ARWATEWEEH 460 (474)
Q Consensus 451 ~~w~~~~~~~ 460 (474)
++|+...+++
T Consensus 425 fsw~~~~~~~ 434 (439)
T TIGR02472 425 YSWDAHVEKY 434 (439)
T ss_pred CCHHHHHHHH
Confidence 8887766554
No 12
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=9.7e-33 Score=283.13 Aligned_cols=360 Identities=20% Similarity=0.203 Sum_probs=253.2
Q ss_pred CCCCch-HHHHHHHHHhhCCCeEEEEecCCCCCCcc-eeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 011969 15 LGRSPR-MQYQALSLARQMSLEVDVVAYGGSKPHAA-ILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLL 92 (474)
Q Consensus 15 ~g~~~r-~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~-~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (474)
.||..+ +...+..|+++ ||+|+|++......... .....++.+++++..+ .....+. ............ +
T Consensus 20 ~GG~~~~~~~l~~~L~~~-g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~----~ 91 (398)
T cd03800 20 TGGQNVYVLELARALARL-GHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGP--AEYLPKE-ELWPYLDEFADD----L 91 (398)
T ss_pred CCceeehHHHHHHHHhcc-CceEEEEEecCCcccCCccccccceEEEeccccc--ccCCChh-hcchhHHHHHHH----H
Confidence 566664 45677888886 99999999654432211 3345689988887211 1111110 000111111111 1
Q ss_pred HHHhhhc-CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEE
Q 011969 93 WFLCVKI-ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCL 171 (474)
Q Consensus 93 ~~~~~~~-~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi 171 (474)
...+.+. .+||+||++.+. +..++..+++..++|+|++.|+.+.....................++.+++.||.++
T Consensus 92 ~~~~~~~~~~~Div~~~~~~---~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii 168 (398)
T cd03800 92 LRFLRREGGRPDLIHAHYWD---SGLVALLLARRLGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVI 168 (398)
T ss_pred HHHHHhcCCCccEEEEecCc---cchHHHHHHhhcCCceEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEEE
Confidence 1112221 289999998742 333456667778899999999874211100000111012233466788889999999
Q ss_pred EeCHHHHHHHHHHhCC---ceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcc
Q 011969 172 CVTQAMQHELAQNWGI---KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSL 247 (474)
Q Consensus 172 ~vS~~~~~~l~~~~~~---~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (474)
++|+.+++.+.+.++. ++.+++|+.+ +.|.+..... ..+..++
T Consensus 169 ~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~~--~~~~~~~------------------------------- 215 (398)
T cd03800 169 ASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRAE--ARRARLL------------------------------- 215 (398)
T ss_pred EcCHHHHHHHHHHccccccccEEECCCCCccceecccchh--hHHHhhc-------------------------------
Confidence 9999999988876543 2789999854 4454432111 1011111
Q ss_pred cccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCC
Q 011969 248 AGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP 327 (474)
Q Consensus 248 ~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~ 327 (474)
.+.++ .+++|+|++.+.||++.+++|+..+.++ .++++|+|+|+++
T Consensus 216 ------~~~~~-~~i~~~gr~~~~k~~~~ll~a~~~l~~~---------------------------~~~~~l~i~G~~~ 261 (398)
T cd03800 216 ------RDPDK-PRILAVGRLDPRKGIDTLIRAYAELPEL---------------------------RERANLVIVGGPR 261 (398)
T ss_pred ------cCCCC-cEEEEEcccccccCHHHHHHHHHHHHHh---------------------------CCCeEEEEEECCC
Confidence 12333 3899999999999999999999998763 6789999999886
Q ss_pred Ch------HHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccccc
Q 011969 328 DK------ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI 400 (474)
Q Consensus 328 ~~------~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~ 400 (474)
.. +.+++.++.+++ ++|.|+|. ++.+++..+++.||++++ ||..|++|++++|||+||+|||+++.++.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~adi~l~---ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~ 337 (398)
T cd03800 262 DDILAMDEEELRELARELGVIDRVDFPGR-VSREDLPALYRAADVFVN---PALYEPFGLTALEAMACGLPVVATAVGGP 337 (398)
T ss_pred CcchhhhhHHHHHHHHhcCCCceEEEecc-CCHHHHHHHHHhCCEEEe---cccccccCcHHHHHHhcCCCEEECCCCCH
Confidence 53 335667788888 79999998 999999999999999999 67789999999999999999999999999
Q ss_pred ccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHH
Q 011969 401 EELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEH 460 (474)
Q Consensus 401 ~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~ 460 (474)
.|++.++++|++++ |+++++++|.+++++ ++.++++++++++.. +.++|+...++.
T Consensus 338 ~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~~----~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 396 (398)
T cd03800 338 RDIVVDGVTGLLVDPRDPEALAAALRRLLTD----PALRRRLSRAGLRRARARYTWERVAARL 396 (398)
T ss_pred HHHccCCCCeEEeCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999996 699999999999984 889999999999876 778887665543
No 13
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=1.5e-32 Score=287.84 Aligned_cols=273 Identities=19% Similarity=0.221 Sum_probs=211.8
Q ss_pred hcCCCCEEEEeCCCChhHHHHHHHHHh--hCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCH
Q 011969 98 KIASPDVFLVQNPPSVPTLVAVKWASS--LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQ 175 (474)
Q Consensus 98 ~~~~~Dvi~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~ 175 (474)
+..+||+||+|..+. ...+..++. ..+.++++++|+... .... ....++...+..++.||.++++|+
T Consensus 115 ~~~~~diihaH~~~~---~~~~~~~~~~~~~~~~~~~t~Hg~d~-------~~~~-~~~~~~~~~~~~~~~ad~vv~~S~ 183 (406)
T PRK15427 115 TPFVADVFIAHFGPA---GVTAAKLRELGVLRGKIATIFHGIDI-------SSRE-VLNHYTPEYQQLFRRGDLMLPISD 183 (406)
T ss_pred ccCCCCEEEEcCChH---HHHHHHHHHhCCCCCCeEEEEccccc-------ccch-hhhhhhHHHHHHHHhCCEEEECCH
Confidence 346899999998532 222333433 234466889997621 1111 111112234455688999999999
Q ss_pred HHHHHHHHHhCCc---eEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccc
Q 011969 176 AMQHELAQNWGIK---ATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGID 251 (474)
Q Consensus 176 ~~~~~l~~~~~~~---~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (474)
.+++.+.+. +.+ +.+++||.+ +.|.+...
T Consensus 184 ~~~~~l~~~-g~~~~ki~vi~nGvd~~~f~~~~~---------------------------------------------- 216 (406)
T PRK15427 184 LWAGRLQKM-GCPPEKIAVSRMGVDMTRFSPRPV---------------------------------------------- 216 (406)
T ss_pred HHHHHHHHc-CCCHHHEEEcCCCCCHHHcCCCcc----------------------------------------------
Confidence 999998764 543 789999954 44533210
Q ss_pred cccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHH
Q 011969 252 VFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKES 331 (474)
Q Consensus 252 ~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~ 331 (474)
...+.++.++|+|++.+.||++.+++|++.+.++ .++++|+|+|+|+..++
T Consensus 217 --~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~---------------------------~~~~~l~ivG~G~~~~~ 267 (406)
T PRK15427 217 --KAPATPLEIISVARLTEKKGLHVAIEACRQLKEQ---------------------------GVAFRYRILGIGPWERR 267 (406)
T ss_pred --ccCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhh---------------------------CCCEEEEEEECchhHHH
Confidence 0123445899999999999999999999998773 68899999999999999
Q ss_pred HHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCC-C--CCCCchHHHHHHhcCCcEEEecccccccccccC
Q 011969 332 YEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-S--GLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVD 407 (474)
Q Consensus 332 ~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s-~--~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~ 407 (474)
+++.++++++ ++|.|.|. ++.+++..+|+.||++|+|.... . .|++|++++||||||+|||+|+.+++.|++.++
T Consensus 268 l~~~~~~~~l~~~V~~~G~-~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E~v~~~ 346 (406)
T PRK15427 268 LRTLIEQYQLEDVVEMPGF-KPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEAD 346 (406)
T ss_pred HHHHHHHcCCCCeEEEeCC-CCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchhhhcCC
Confidence 9999999999 78999987 99999999999999999963221 1 399999999999999999999999999999999
Q ss_pred CcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHH
Q 011969 408 KNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHA 461 (474)
Q Consensus 408 ~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~ 461 (474)
.+|++++ |+++++++|.++++. |++.+++|++++++.. +.++|+...++..
T Consensus 347 ~~G~lv~~~d~~~la~ai~~l~~~---d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~ 400 (406)
T PRK15427 347 KSGWLVPENDAQALAQRLAAFSQL---DTDELAPVVKRAREKVETDFNQQVINRELA 400 (406)
T ss_pred CceEEeCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999996 799999999999983 4888999999998865 5688877665543
No 14
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=100.00 E-value=3.5e-32 Score=272.68 Aligned_cols=360 Identities=23% Similarity=0.306 Sum_probs=258.5
Q ss_pred CCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcce------eccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHH
Q 011969 16 GRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAI------LEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFF 89 (474)
Q Consensus 16 g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~------~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (474)
|...++...+..|+++ ||+|++++.......... ....+++++.++...... ......+.........
T Consensus 15 G~~~~~~~l~~~L~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-- 88 (394)
T cd03794 15 GGAFRTTELAEELVKR-GHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKK---NGLLKRLLNYLSFALS-- 88 (394)
T ss_pred CcceeHHHHHHHHHhC-CceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCc---cchHHHHHhhhHHHHH--
Confidence 4566677788899986 999999997654433222 345689998888332211 1111111111111111
Q ss_pred HHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhc-cCCCchH-HHHHHHHHHHHhhhc
Q 011969 90 MLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLS-LGRRSHF-VSIYRWIEKYYGKMA 167 (474)
Q Consensus 90 ~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~-~~~~~~~-~~~~~~~e~~~~~~a 167 (474)
....+..+..+||+||++++.. .....+...++..++|+++++|+......... ....... ....+++++...+.+
T Consensus 89 -~~~~~~~~~~~~D~v~~~~~~~-~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (394)
T cd03794 89 -ALLALLKRRRRPDVIIATSPPL-LIALAALLLARLKGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLERLIYRRA 166 (394)
T ss_pred -HHHHHHhcccCCCEEEEcCChH-HHHHHHHHHHHhcCCCEEEEehhhcchhHHHccCccccchHHHHHHHHHHHHHhcC
Confidence 1122221358899999998433 33334566666678999999999743222111 1112222 266778899999999
Q ss_pred CEEEEeCHHHHHHHHHHhC---CceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhh
Q 011969 168 NGCLCVTQAMQHELAQNWG---IKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETI 243 (474)
Q Consensus 168 d~vi~vS~~~~~~l~~~~~---~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (474)
|.++++|+.+++.+.. .+ .++.+++|+.+ ..+.+...... +.++
T Consensus 167 d~vi~~s~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~---------------------------- 214 (394)
T cd03794 167 DAIVVISPGMREYLVR-RGVPPEKISVIPNGVDLELFKPPPADES---LRKE---------------------------- 214 (394)
T ss_pred CEEEEECHHHHHHHHh-cCCCcCceEEcCCCCCHHHcCCccchhh---hhhc----------------------------
Confidence 9999999999998873 33 34889999854 33333321110 1111
Q ss_pred hhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEE
Q 011969 244 FTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT 323 (474)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv 323 (474)
.....+..++++|++.+.||++.+++++..+.+ . ++++|+|+
T Consensus 215 ----------~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~---------------------------~-~~~~l~i~ 256 (394)
T cd03794 215 ----------LGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKD---------------------------R-PDIRFLIV 256 (394)
T ss_pred ----------cCCCCcEEEEEecCcccccCHHHHHHHHHHHhh---------------------------c-CCeEEEEe
Confidence 113345589999999999999999999999876 2 68999999
Q ss_pred eCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCC--CCCCchHHHHHHhcCCcEEEecccccc
Q 011969 324 GKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS--GLDLPMKVVDMFGCGLPVCAVSYSCIE 401 (474)
Q Consensus 324 G~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~--~e~~p~kv~Eama~G~PVia~~~~~~~ 401 (474)
|+|+..+.+++.+...++++|.|.|. ++.+++..+|+.||++++|..... +.++|++++|||+||+|||+++.++..
T Consensus 257 G~~~~~~~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~ 335 (394)
T cd03794 257 GDGPEKEELKELAKALGLDNVTFLGR-VPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESA 335 (394)
T ss_pred CCcccHHHHHHHHHHcCCCcEEEeCC-CChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCch
Confidence 99999888888877778889999996 999999999999999999644432 566799999999999999999999999
Q ss_pred cccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcc-ccchHHHHH
Q 011969 402 ELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGL-SARWATEWE 458 (474)
Q Consensus 402 e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~ 458 (474)
+.+.++.+|++++ |+++++++|..+++ |++.++++++++++... .++|+..-+
T Consensus 336 ~~~~~~~~g~~~~~~~~~~l~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~~~ 391 (394)
T cd03794 336 ELVEEAGAGLVVPPGDPEALAAAILELLD----DPEERAEMGENGRRYVEEKFSREKLAE 391 (394)
T ss_pred hhhccCCcceEeCCCCHHHHHHHHHHHHh----ChHHHHHHHHHHHHHHHHhhcHHHHHH
Confidence 9999889999986 79999999999997 48899999999998764 677765443
No 15
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=1.7e-32 Score=285.14 Aligned_cols=354 Identities=17% Similarity=0.161 Sum_probs=238.0
Q ss_pred hHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011969 20 RMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKI 99 (474)
Q Consensus 20 r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (474)
.....|..|+++ ||+|+|+|..+...... |+++++++...............+.........++..+..+..+.
T Consensus 12 ~~~~la~~L~~~-G~~v~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (396)
T cd03818 12 QFRHLAPALAAQ-GHEVVFLTEPNAAPPPG-----GVRVVRYRPPRGPTSGTHPYLREFEEAVLRGQAVARALLALRAKG 85 (396)
T ss_pred hHHHHHHHHHHC-CCEEEEEecCCCCCCCC-----CeeEEEecCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcC
Confidence 355678999997 99999999876542211 799999884322111111111111111111112222333333344
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHh-hCCCcEEEEecCchhhhhhhc--cC---CCch--HH--HHHHHHHHHHhhhcCE
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASS-LRRSAFIVDWHNFGYTLLSLS--LG---RRSH--FV--SIYRWIEKYYGKMANG 169 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~h~~~~~~~~~~--~~---~~~~--~~--~~~~~~e~~~~~~ad~ 169 (474)
.+||+||+|.... .. ..++. ..+.|+|...|-+ +...... +. .... .. +....+....++.||.
T Consensus 86 ~~pdvi~~h~~~~--~~---~~l~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 159 (396)
T cd03818 86 FRPDVIVAHPGWG--ET---LFLKDVWPDAPLIGYFEFY-YRAEGADVGFDPEFPPSLDDALRLRNRNALILLALAQADA 159 (396)
T ss_pred CCCCEEEECCccc--hh---hhHHHhCCCCCEEEEEeee-ecCCCCCCCCCCCCCCchhHHHHHHHhhhHhHHHHHhCCE
Confidence 6899999997422 12 22233 3567877655422 1110000 01 1111 01 1112234566789999
Q ss_pred EEEeCHHHHHHHHHHhCCceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccc
Q 011969 170 CLCVTQAMQHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLA 248 (474)
Q Consensus 170 vi~vS~~~~~~l~~~~~~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (474)
+|++|+.+++.+.+.++.++.+|+||.+ +.|.|..... .......
T Consensus 160 vi~~s~~~~~~~~~~~~~ki~vI~ngvd~~~f~~~~~~~-~~~~~~~--------------------------------- 205 (396)
T cd03818 160 GVSPTRWQRSTFPAELRSRISVIHDGIDTDRLRPDPQAR-LRLPNGR--------------------------------- 205 (396)
T ss_pred EECCCHHHHhhCcHhhccceEEeCCCccccccCCCchhh-hcccccc---------------------------------
Confidence 9999999999888777777999999954 6666543211 0100000
Q ss_pred ccccccCCCCCeEEEEEee-cccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCC
Q 011969 249 GIDVFLKPNRPALVVSSTS-WTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP 327 (474)
Q Consensus 249 ~~~~~~~~~~~~~i~~~G~-l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~ 327 (474)
.+.++.+ +++|+|+ +.+.||++.+++|+..+.++ .|+++|+|+|++.
T Consensus 206 ----~~~~~~~-~i~~vgR~l~~~Kg~~~ll~a~~~l~~~---------------------------~~~~~lvivG~~~ 253 (396)
T cd03818 206 ----VLTPGDE-VITFVARNLEPYRGFHVFMRALPRLLRA---------------------------RPDARVVIVGGDG 253 (396)
T ss_pred ----cCCCCCe-EEEEECCCcccccCHHHHHHHHHHHHHH---------------------------CCCcEEEEEcCCC
Confidence 0123333 8899997 99999999999999998763 6899999999742
Q ss_pred C--------hH-HHHHHHHHcC----CCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEE
Q 011969 328 D--------KE-SYEEKIRRLR----LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 394 (474)
Q Consensus 328 ~--------~~-~~~~~~~~l~----l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia 394 (474)
. .+ ..++..++++ .++|.|+|. +|.+++..+|+.||++++ +|..+++|++++||||||+|||+
T Consensus 254 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~-v~~~~~~~~l~~adv~v~---~s~~e~~~~~llEAmA~G~PVIa 329 (396)
T cd03818 254 VSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGR-VPYDQYLALLQVSDVHVY---LTYPFVLSWSLLEAMACGCLVVG 329 (396)
T ss_pred cccCCCCCCcccHHHHHHHHhhcccCcceEEEeCC-CCHHHHHHHHHhCcEEEE---cCcccccchHHHHHHHCCCCEEE
Confidence 1 11 1223334433 479999998 999999999999999999 67888999999999999999999
Q ss_pred ecccccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccc-cchHHHHHH
Q 011969 395 VSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLS-ARWATEWEE 459 (474)
Q Consensus 395 ~~~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~w~~~~~~ 459 (474)
++.+++.|++.++.+|++++ |+++++++|..++++ ++.+++|++++++.+.+ ++|+...++
T Consensus 330 s~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~----~~~~~~l~~~ar~~~~~~fs~~~~~~~ 393 (396)
T cd03818 330 SDTAPVREVITDGENGLLVDFFDPDALAAAVIELLDD----PARRARLRRAARRTALRYDLLSVCLPR 393 (396)
T ss_pred cCCCCchhhcccCCceEEcCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999999996 799999999999984 88999999999987744 777655444
No 16
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=4.4e-32 Score=271.58 Aligned_cols=351 Identities=20% Similarity=0.265 Sum_probs=248.2
Q ss_pred CCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 011969 17 RSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLC 96 (474)
Q Consensus 17 ~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (474)
.+.++...+..|.++ ||+|++++......... ....++...... .....+. .... .....+.. .
T Consensus 16 ~~~~~~~l~~~L~~~-g~~v~v~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~----~~~~----~~~~~~~~-~ 79 (374)
T cd03817 16 VATSIRRLAEELEKR-GHEVYVVAPSYPGAPEE-EEVVVVRPFRVP-----TFKYPDF----RLPL----PIPRALII-I 79 (374)
T ss_pred eehHHHHHHHHHHHc-CCeEEEEeCCCCCCCcc-cccccccccccc-----cchhhhh----hccc----cHHHHHHH-H
Confidence 345677778888886 99999999765432211 111112111111 0000000 0000 00001111 1
Q ss_pred hhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHH-HHHHHHhhhcCEEEEeCH
Q 011969 97 VKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYR-WIEKYYGKMANGCLCVTQ 175 (474)
Q Consensus 97 ~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~ad~vi~vS~ 175 (474)
.+..+||+||++++.. ....+..+++..++|+++++|+..................... ++++.+.+.||.++++|+
T Consensus 80 ~~~~~~Div~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~ 157 (374)
T cd03817 80 LKELGPDIVHTHTPFS--LGLLGLRVARKLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSE 157 (374)
T ss_pred HhhcCCCEEEECCchh--hhhHHHHHHHHcCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccH
Confidence 2337899999998633 3334556666778999999998853222111111222222233 678888999999999999
Q ss_pred HHHHHHHHHhCC--ceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccccccc
Q 011969 176 AMQHELAQNWGI--KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDV 252 (474)
Q Consensus 176 ~~~~~l~~~~~~--~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (474)
.+++.+.+. +. ++.+++++.+ ..+.+.... ..+..++
T Consensus 158 ~~~~~~~~~-~~~~~~~vi~~~~~~~~~~~~~~~---~~~~~~~------------------------------------ 197 (374)
T cd03817 158 KIADLLREY-GVKRPIEVIPTGIDLDRFEPVDGD---DERRKLG------------------------------------ 197 (374)
T ss_pred HHHHHHHhc-CCCCceEEcCCccchhccCccchh---HHHHhcC------------------------------------
Confidence 999888764 43 3788898844 444443221 1122222
Q ss_pred ccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHH
Q 011969 253 FLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 332 (474)
Q Consensus 253 ~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~ 332 (474)
. .+.+..++|+|++.+.||++.+++++..+.++ .++++|+++|+|+..+++
T Consensus 198 -~-~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~---------------------------~~~~~l~i~G~~~~~~~~ 248 (374)
T cd03817 198 -I-PEDEPVLLYVGRLAKEKNIDFLIRAFARLLKE---------------------------EPDVKLVIVGDGPEREEL 248 (374)
T ss_pred -C-CCCCeEEEEEeeeecccCHHHHHHHHHHHHHh---------------------------CCCeEEEEEeCCchHHHH
Confidence 1 23344899999999999999999999998773 578999999999998999
Q ss_pred HHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEE
Q 011969 333 EEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGL 411 (474)
Q Consensus 333 ~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~ 411 (474)
++.++++++ ++|.|.|. ++.+++..+|+.||++++ ++..+++|++++|||+||+|||+++.++..+++.++.+|+
T Consensus 249 ~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~ad~~l~---~s~~e~~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~~~~g~ 324 (374)
T cd03817 249 EELARELGLADRVIFTGF-VPREELPDYYKAADLFVF---ASTTETQGLVLLEAMAAGLPVVAVDAPGLPDLVADGENGF 324 (374)
T ss_pred HHHHHHcCCCCcEEEecc-CChHHHHHHHHHcCEEEe---cccccCcChHHHHHHHcCCcEEEeCCCChhhheecCceeE
Confidence 999998888 69999998 999999999999999999 5777889999999999999999999999999999999999
Q ss_pred EeCC-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Q 011969 412 LFSS-SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAK 462 (474)
Q Consensus 412 l~~~-~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 462 (474)
++++ .++++++|..++++ ++.+++|++++++...++.|...++++++
T Consensus 325 ~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (374)
T cd03817 325 LFPPGDEALAEALLRLLQD----PELRRRLSKNAEESAEKFSFAKKVEKLYE 372 (374)
T ss_pred EeCCCCHHHHHHHHHHHhC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9974 33999999999985 78889999999998766666666666554
No 17
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=3.5e-32 Score=279.83 Aligned_cols=346 Identities=19% Similarity=0.288 Sum_probs=244.2
Q ss_pred CCCch-HHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 011969 16 GRSPR-MQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWF 94 (474)
Q Consensus 16 g~~~r-~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (474)
||.++ +...+..|.++ ++|+|++..... ....++++++++.+.. .......+... . ..+.
T Consensus 16 GG~~~~v~~l~~~l~~~--~~v~v~~~~~~~-----~~~~~~~~~~~~~~~~----~~~~~~~~~~~-------~-~~~~ 76 (388)
T TIGR02149 16 GGAGVHVEELTRELARL--MDVDVRCFGDQR-----FDSEGLTVKGYRPWSE----LKEANKALGTF-------S-VDLA 76 (388)
T ss_pred ccHhHHHHHHHHHHHHh--cCeeEEcCCCch-----hcCCCeEEEEecChhh----ccchhhhhhhh-------h-HHHH
Confidence 44433 44455666654 788888876432 2345888887762211 11111111111 0 0111
Q ss_pred HhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeC
Q 011969 95 LCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVT 174 (474)
Q Consensus 95 ~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 174 (474)
...+..++|+||+|++. ..+++.+++++.++|+|+++|+...... ...........+..++++...+.||.++++|
T Consensus 77 ~~~~~~~~divh~~~~~---~~~~~~~~~~~~~~p~v~~~h~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S 152 (388)
T TIGR02149 77 MANDPVDADVVHSHTWY---TFLAGHLAKKLYDKPLVVTAHSLEPLRP-WKEEQLGGGYKLSSWAEKTAIEAADRVIAVS 152 (388)
T ss_pred HhhCCCCCCeEeecchh---hhhHHHHHHHhcCCCEEEEeeccccccc-ccccccccchhHHHHHHHHHHhhCCEEEEcc
Confidence 22233579999999842 2335666777889999999998731100 0000001112345688899999999999999
Q ss_pred HHHHHHHHHHh-CC---ceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccc
Q 011969 175 QAMQHELAQNW-GI---KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAG 249 (474)
Q Consensus 175 ~~~~~~l~~~~-~~---~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (474)
+.+++.+.+.+ +. ++.+++|+.+ +.|.+.. ....+.+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~i~vi~ng~~~~~~~~~~---~~~~~~~~~--------------------------------- 196 (388)
T TIGR02149 153 GGMREDILKYYPDLDPEKVHVIYNGIDTKEYKPDD---GNVVLDRYG--------------------------------- 196 (388)
T ss_pred HHHHHHHHHHcCCCCcceEEEecCCCChhhcCCCc---hHHHHHHhC---------------------------------
Confidence 99999988766 32 3789999954 5555432 233444544
Q ss_pred cccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh
Q 011969 250 IDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK 329 (474)
Q Consensus 250 ~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~ 329 (474)
++++.+ +++|+|++.+.||++.|++|++.+. ++++++++|+|++.
T Consensus 197 ----~~~~~~-~i~~~Grl~~~Kg~~~li~a~~~l~------------------------------~~~~l~i~g~g~~~ 241 (388)
T TIGR02149 197 ----IDRSRP-YILFVGRITRQKGVPHLLDAVHYIP------------------------------KDVQVVLCAGAPDT 241 (388)
T ss_pred ----CCCCce-EEEEEcccccccCHHHHHHHHHHHh------------------------------hcCcEEEEeCCCCc
Confidence 223344 8999999999999999999998863 35788998887664
Q ss_pred ----HHHHHHHHHcCC--CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccc
Q 011969 330 ----ESYEEKIRRLRL--KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEEL 403 (474)
Q Consensus 330 ----~~~~~~~~~l~l--~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~ 403 (474)
+++++.+++++. ++|.|.+++++.+++..+|+.||++|+ ||..|++|++++|||+||+|||+++.++..|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~---ps~~e~~g~~~lEA~a~G~PvI~s~~~~~~e~ 318 (388)
T TIGR02149 242 PEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVC---PSIYEPLGIVNLEAMACGTPVVASATGGIPEV 318 (388)
T ss_pred HHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEe---CCccCCCChHHHHHHHcCCCEEEeCCCCHHHH
Confidence 345555566655 358887766999999999999999999 68889999999999999999999999999999
Q ss_pred cccCCcEEEeC--CH------HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHHH
Q 011969 404 VKVDKNGLLFS--SS------SELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHAK 462 (474)
Q Consensus 404 v~~~~~G~l~~--~~------~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~ 462 (474)
+.++.+|++++ +. ++++++|.+++++ ++.+++|++++++.. ++++|+...+++.+
T Consensus 319 i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~----~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 382 (388)
T TIGR02149 319 VVDGETGFLVPPDNSDADGFQAELAKAINILLAD----PELAKKMGIAGRKRAEEEFSWGSIAKKTVE 382 (388)
T ss_pred hhCCCceEEcCCCCCcccchHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999996 56 8999999999984 889999999998865 57888877666443
No 18
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=1.5e-32 Score=279.35 Aligned_cols=274 Identities=21% Similarity=0.231 Sum_probs=215.1
Q ss_pred hcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHH
Q 011969 98 KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAM 177 (474)
Q Consensus 98 ~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~ 177 (474)
+..+||+||++... ... .+..+++..++|+++++|+....... ....... .+.+..+++.+.+.+|.++++|+.+
T Consensus 79 ~~~~~dvvh~~~~~--~~~-~~~~~~~~~~~p~i~~~h~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~d~ii~~s~~~ 153 (367)
T cd05844 79 RRHRPDLVHAHFGF--DGV-YALPLARRLGVPLVVTFHGFDATTSL-ALLLRSR-WALYARRRRRLARRAALFIAVSQFI 153 (367)
T ss_pred HhhCCCEEEeccCc--hHH-HHHHHHHHcCCCEEEEEeCccccccc-hhhcccc-hhHHHHHHHHHHHhcCEEEECCHHH
Confidence 34789999998743 222 34445667789999999976321110 0000011 2345567788889999999999999
Q ss_pred HHHHHHHhCC---ceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccc
Q 011969 178 QHELAQNWGI---KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVF 253 (474)
Q Consensus 178 ~~~l~~~~~~---~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (474)
++.+.+. +. ++.+++|+.+ +.|.+..
T Consensus 154 ~~~~~~~-~~~~~~i~vi~~g~d~~~~~~~~------------------------------------------------- 183 (367)
T cd05844 154 RDRLLAL-GFPPEKVHVHPIGVDTAKFTPAT------------------------------------------------- 183 (367)
T ss_pred HHHHHHc-CCCHHHeEEecCCCCHHhcCCCC-------------------------------------------------
Confidence 9988874 44 3788999854 3343321
Q ss_pred cCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHH
Q 011969 254 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 333 (474)
Q Consensus 254 ~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~ 333 (474)
....+..++|+|++.+.||++.+++|+..+.++ .++++|+|+|+|+..++++
T Consensus 184 -~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~---------------------------~~~~~l~ivG~g~~~~~~~ 235 (367)
T cd05844 184 -PARRPPRILFVGRFVEKKGPLLLLEAFARLARR---------------------------VPEVRLVIIGDGPLLAALE 235 (367)
T ss_pred -CCCCCcEEEEEEeeccccChHHHHHHHHHHHHh---------------------------CCCeEEEEEeCchHHHHHH
Confidence 012233899999999999999999999998773 6899999999999888899
Q ss_pred HHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCC---CCCCCchHHHHHHhcCCcEEEecccccccccccCCc
Q 011969 334 EKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS---SGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKN 409 (474)
Q Consensus 334 ~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s---~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~ 409 (474)
+.++++++ ++|.|.|. ++.+++..+|+.||++++|...+ ..|++|++++|||+||+|||+++.++..|++.++.+
T Consensus 236 ~~~~~~~~~~~v~~~g~-~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~~~~ 314 (367)
T cd05844 236 ALARALGLGGRVTFLGA-QPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVEDGET 314 (367)
T ss_pred HHHHHcCCCCeEEECCC-CCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchhheecCCe
Confidence 99999888 79999998 99999999999999999963322 258999999999999999999999999999999999
Q ss_pred EEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHH
Q 011969 410 GLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEE 459 (474)
Q Consensus 410 G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~ 459 (474)
|++++ |+++++++|.+++++ ++.++++++++++.+ +.++|+..-++
T Consensus 315 g~~~~~~d~~~l~~~i~~l~~~----~~~~~~~~~~a~~~~~~~~s~~~~~~~ 363 (367)
T cd05844 315 GLLVPEGDVAALAAALGRLLAD----PDLRARMGAAGRRRVEERFDLRRQTAK 363 (367)
T ss_pred eEEECCCCHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 99996 799999999999984 888999999998865 56777765444
No 19
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=1.1e-31 Score=285.91 Aligned_cols=373 Identities=15% Similarity=0.115 Sum_probs=244.4
Q ss_pred CCCCchH-HHHHHHHHhhCCCeEEEEecCCCCCCcc------------------eeccCCeEEEEeecCCCCCCCCCchh
Q 011969 15 LGRSPRM-QYQALSLARQMSLEVDVVAYGGSKPHAA------------------ILEHPSIHIHTMTQWPTIPRGLPKVL 75 (474)
Q Consensus 15 ~g~~~r~-~~~a~~l~~~~g~eV~Vv~~~~~~~~~~------------------~~~~~gi~i~~~~~~~~~~~~~~~~~ 75 (474)
.||...+ ...+.+|+++ ||+|+|+++........ ....+|++++.+.......+ ..+.
T Consensus 16 ~GGl~~~v~~L~~~L~~~-G~~V~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~v~~~~~~~~--~~~y 92 (466)
T PRK00654 16 TGGLGDVVGALPKALAAL-GHDVRVLLPGYPAIREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYLIDAPHLFDR--PSGY 92 (466)
T ss_pred cCcHHHHHHHHHHHHHHC-CCcEEEEecCCcchhhhhcCceEEEEeeeEEEEEEeEEcCCceEEEEeCHHHcCC--CCCC
Confidence 3444443 3456777775 99999999663321100 01236899888873211000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhh-----CCCcEEEEecCchhhhhh-----hc
Q 011969 76 KPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSL-----RRSAFIVDWHNFGYTLLS-----LS 145 (474)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~h~~~~~~~~-----~~ 145 (474)
.......++.......+..+.....+||+||+|. ..+.+++.+++.. .++|+|+++|+..+.-.. ..
T Consensus 93 ~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~---w~~~~~~~~l~~~~~~~~~~~~~v~TiH~~~~~g~~~~~~~~~ 169 (466)
T PRK00654 93 GYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHD---WHTGLIPALLKEKYWRGYPDIKTVFTIHNLAYQGLFPAEILGE 169 (466)
T ss_pred CCcChHHHHHHHHHHHHHHHHhcCCCCceEEECC---cHHHHHHHHHHHhhhccCCCCCEEEEcCCCcCCCcCCHHHHHH
Confidence 0000111111000001111111125899999998 4444455555533 378999999998531100 00
Q ss_pred cCCC-ch--HHHH--H--HHHHHHHhhhcCEEEEeCHHHHHHHHHH-h-----------CCceEEEeCCCC-CCCCCCCh
Q 011969 146 LGRR-SH--FVSI--Y--RWIEKYYGKMANGCLCVTQAMQHELAQN-W-----------GIKATVLYDQPP-EFFHPTSL 205 (474)
Q Consensus 146 ~~~~-~~--~~~~--~--~~~e~~~~~~ad~vi~vS~~~~~~l~~~-~-----------~~~~~vi~n~~~-~~f~~~~~ 205 (474)
.+.. .. ...+ + ..+.+...+.||.++++|+.+++++.+. + ..++.+|+||.+ +.|.|...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~p~~~ 249 (466)
T PRK00654 170 LGLPAEAFHLEGLEFYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDIWNPETD 249 (466)
T ss_pred cCCChHHcCchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCccccCCccC
Confidence 0000 00 0000 0 1234556789999999999999888642 1 235899999944 66766422
Q ss_pred ----------------HHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCC-CCCeEEEEEeec
Q 011969 206 ----------------EEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKP-NRPALVVSSTSW 268 (474)
Q Consensus 206 ----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~G~l 268 (474)
..+..+++++| +++ +.+ +++++||+
T Consensus 250 ~~~~~~~~~~~~~~k~~~k~~l~~~~g-------------------------------------l~~~~~~-~i~~vGRl 291 (466)
T PRK00654 250 PLLAANYSADDLEGKAENKRALQERFG-------------------------------------LPDDDAP-LFAMVSRL 291 (466)
T ss_pred cccccccChhhhhchHHHHHHHHHHhC-------------------------------------CCCCCCc-EEEEeecc
Confidence 12334555555 222 344 89999999
Q ss_pred ccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHHHHHHHcCCCcEEE
Q 011969 269 TPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEKIRRLRLKRVAF 346 (474)
Q Consensus 269 ~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~~~~~~l~l~~V~f 346 (474)
.+.||++.|++|++.+.+ ++++|+|+|+|+. .+++++.+++++. ++.+
T Consensus 292 ~~~KG~~~li~a~~~l~~-----------------------------~~~~lvivG~g~~~~~~~l~~l~~~~~~-~v~~ 341 (466)
T PRK00654 292 TEQKGLDLVLEALPELLE-----------------------------QGGQLVLLGTGDPELEEAFRALAARYPG-KVGV 341 (466)
T ss_pred ccccChHHHHHHHHHHHh-----------------------------cCCEEEEEecCcHHHHHHHHHHHHHCCC-cEEE
Confidence 999999999999998865 3689999999864 3678888888864 5666
Q ss_pred ecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccC------CcEEEeC--CHHH
Q 011969 347 RTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVD------KNGLLFS--SSSE 418 (474)
Q Consensus 347 ~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~------~~G~l~~--~~~~ 418 (474)
.+. .+.+.++.+|+.||++|+ ||..|+||++++|||+||+|+|+++.+|+.|+|.++ .+|++++ |+++
T Consensus 342 ~~g-~~~~~~~~~~~~aDv~v~---PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~d~~~ 417 (466)
T PRK00654 342 QIG-YDEALAHRIYAGADMFLM---PSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDFNAED 417 (466)
T ss_pred EEe-CCHHHHHHHHhhCCEEEe---CCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCCCHHH
Confidence 555 356667899999999999 788999999999999999999999999999999888 8999996 7999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHh
Q 011969 419 LADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEVI 469 (474)
Q Consensus 419 la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 469 (474)
|+++|..+++.+. +++.+++|++++.+ +.++|+...+++ ..+++++.
T Consensus 418 la~~i~~~l~~~~-~~~~~~~~~~~~~~--~~fsw~~~a~~~-~~lY~~~~ 464 (466)
T PRK00654 418 LLRALRRALELYR-QPPLWRALQRQAMA--QDFSWDKSAEEY-LELYRRLL 464 (466)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHhc--cCCChHHHHHHH-HHHHHHHh
Confidence 9999999887432 46668888888864 478898877664 44555554
No 20
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=5.2e-32 Score=273.51 Aligned_cols=331 Identities=20% Similarity=0.203 Sum_probs=238.1
Q ss_pred CCCCCCchHHH-HHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 011969 13 GDLGRSPRMQY-QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFML 91 (474)
Q Consensus 13 ~~~g~~~r~~~-~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (474)
-+.||.+++.. .+..|+++ ||+|.+++..+.. .......+++++.++ ..... ....+.. ...
T Consensus 7 ~~~gG~e~~~~~l~~~L~~~-g~~v~v~~~~~~~--~~~~~~~~~~~~~~~--~~~~~----~~~~~~~----~~~---- 69 (355)
T cd03819 7 LESGGVERGTLELARALVER-GHRSLVASAGGRL--VAELEAEGSRHIKLP--FISKN----PLRILLN----VAR---- 69 (355)
T ss_pred hccCcHHHHHHHHHHHHHHc-CCEEEEEcCCCch--HHHHHhcCCeEEEcc--ccccc----hhhhHHH----HHH----
Confidence 33577777665 46777775 9999999865432 233445578877776 21111 1111111 111
Q ss_pred HHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEE
Q 011969 92 LWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCL 171 (474)
Q Consensus 92 ~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi 171 (474)
+...+. ..+||+||++++.. .. .+.++.+..++|+++++|+..... . ..+.+.+.+|.++
T Consensus 70 l~~~~~-~~~~dii~~~~~~~--~~-~~~~~~~~~~~~~i~~~h~~~~~~--------~--------~~~~~~~~~~~vi 129 (355)
T cd03819 70 LRRLIR-EEKVDIVHARSRAP--AW-SAYLAARRTRPPFVTTVHGFYSVN--------F--------RYNAIMARGDRVI 129 (355)
T ss_pred HHHHHH-HcCCCEEEECCCch--hH-HHHHHHHhcCCCEEEEeCCchhhH--------H--------HHHHHHHhcCEEE
Confidence 111222 27899999998532 22 344555667899999999883210 0 2234456899999
Q ss_pred EeCHHHHHHHHHHhCC---ceEEEeCCCC-CCCCCCCh--HHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhh
Q 011969 172 CVTQAMQHELAQNWGI---KATVLYDQPP-EFFHPTSL--EEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFT 245 (474)
Q Consensus 172 ~vS~~~~~~l~~~~~~---~~~vi~n~~~-~~f~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (474)
++|+.+++.+.+.++. ++.+++|+.+ +.|.+... .....++.+++
T Consensus 130 ~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 180 (355)
T cd03819 130 AVSNFIADHIRENYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALAREWP----------------------------- 180 (355)
T ss_pred EeCHHHHHHHHHhcCCChhhEEEecCCccccccCccccchHHHHHHHHHcC-----------------------------
Confidence 9999999999876765 3789999844 45544321 11111333332
Q ss_pred cccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeC
Q 011969 246 SLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK 325 (474)
Q Consensus 246 ~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~ 325 (474)
. ++...+++|+|++.+.||++.+++++..+.++ .++++++|+|.
T Consensus 181 --------~-~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~---------------------------~~~~~l~ivG~ 224 (355)
T cd03819 181 --------L-PKGKPVILLPGRLTRWKGQEVFIEALARLKKD---------------------------DPDVHLLIVGD 224 (355)
T ss_pred --------C-CCCceEEEEeeccccccCHHHHHHHHHHHHhc---------------------------CCCeEEEEEEC
Confidence 1 22334899999999999999999999998772 57899999999
Q ss_pred CCChHHH----HHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCC-CCCCCchHHHHHHhcCCcEEEecccc
Q 011969 326 GPDKESY----EEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAVSYSC 399 (474)
Q Consensus 326 g~~~~~~----~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s-~~e~~p~kv~Eama~G~PVia~~~~~ 399 (474)
++..+.+ .+.++++++ ++|.|.|. .+++..+|+.||++++ +| ..|++|++++||||||+|||+++.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~l~~ad~~i~---ps~~~e~~~~~l~EA~a~G~PvI~~~~~~ 298 (355)
T cd03819 225 AQGRRFYYAELLELIKRLGLQDRVTFVGH---CSDMPAAYALADIVVS---ASTEPEAFGRTAVEAQAMGRPVIASDHGG 298 (355)
T ss_pred CcccchHHHHHHHHHHHcCCcceEEEcCC---cccHHHHHHhCCEEEe---cCCCCCCCchHHHHHHhcCCCEEEcCCCC
Confidence 8765433 456677787 68999998 8899999999999999 56 78999999999999999999999999
Q ss_pred cccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchH
Q 011969 400 IEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWA 454 (474)
Q Consensus 400 ~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~ 454 (474)
..|++.++.+|++++ |+++++++|..++.. +++.++++++++++.+ ..++|+
T Consensus 299 ~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~~---~~~~~~~~~~~a~~~~~~~f~~~ 353 (355)
T cd03819 299 ARETVRPGETGLLVPPGDAEALAQALDQILSL---LPEGRAKMFAKARMCVETLFSYD 353 (355)
T ss_pred cHHHHhCCCceEEeCCCCHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHHhhhhc
Confidence 999999999999985 799999999776664 6889999999999866 455554
No 21
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=1e-31 Score=301.84 Aligned_cols=307 Identities=17% Similarity=0.179 Sum_probs=222.1
Q ss_pred CCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhh--ccCC------CchHH-HHHHHHHHHHhhhcCEEE
Q 011969 101 SPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSL--SLGR------RSHFV-SIYRWIEKYYGKMANGCL 171 (474)
Q Consensus 101 ~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~--~~~~------~~~~~-~~~~~~e~~~~~~ad~vi 171 (474)
.||+||.|. ..+..++..++...++|+|+|.|..+-..... .-+. ...+. ......|+...+.||.||
T Consensus 310 ~pDvIHaHy---w~sG~aa~~L~~~lgVP~V~T~HSLgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VI 386 (1050)
T TIGR02468 310 WPYVIHGHY---ADAGDSAALLSGALNVPMVLTGHSLGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVI 386 (1050)
T ss_pred CCCEEEECc---chHHHHHHHHHHhhCCCEEEECccchhhhhhhhcccccccccccccccchHHHHHHHHHHHHhcCEEE
Confidence 499999997 56666788888899999999999885322110 0010 00011 111246889999999999
Q ss_pred EeCHHHHHHHHHHhC-------------------------CceEEEeCCC-CCCCCCCChHHHHHHHHhhhhccCCCCCc
Q 011969 172 CVTQAMQHELAQNWG-------------------------IKATVLYDQP-PEFFHPTSLEEKHELFCRLNKILHQPLGV 225 (474)
Q Consensus 172 ~vS~~~~~~l~~~~~-------------------------~~~~vi~n~~-~~~f~~~~~~~~~~~~~~l~~~~~~~~~~ 225 (474)
|+|...++++...|+ .++.|||+|. .+.|.|....... ..++.
T Consensus 387 asT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~---~~~~~-------- 455 (1050)
T TIGR02468 387 TSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDG---ETEGN-------- 455 (1050)
T ss_pred EeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccc---hhccc--------
Confidence 999999987766553 1579999994 4778775321110 00000
Q ss_pred cccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHh
Q 011969 226 QDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLK 305 (474)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~ 305 (474)
.+ .+...++.+.... ......++.| +|+++|++.+.||++.||+|+..+.+.
T Consensus 456 ~~-------~~~~~~~~~~~~l--~r~~~~pdkp-vIL~VGRL~p~KGi~~LIeAf~~L~~l------------------ 507 (1050)
T TIGR02468 456 EE-------HPAKPDPPIWSEI--MRFFTNPRKP-MILALARPDPKKNITTLVKAFGECRPL------------------ 507 (1050)
T ss_pred cc-------ccccccchhhHHH--HhhcccCCCc-EEEEEcCCccccCHHHHHHHHHHhHhh------------------
Confidence 00 0000000000000 0001234555 899999999999999999999988641
Q ss_pred hhcCCccccCCCEEEEEEeCCCCh-----------HHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcc----cEEEee
Q 011969 306 EISDGKQYLYPRLLFIITGKGPDK-----------ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSA----DLGVCL 369 (474)
Q Consensus 306 ~~~~~~~~~~~~~~l~ivG~g~~~-----------~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~a----dv~v~~ 369 (474)
...+++. +|+|+|++. .++++.++++++ ++|.|.|. ++.++++.+|+.| |+||+
T Consensus 508 -------~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~-v~~edvp~lYr~Ad~s~DVFV~- 577 (1050)
T TIGR02468 508 -------RELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYPKH-HKQSDVPDIYRLAAKTKGVFIN- 577 (1050)
T ss_pred -------ccCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEecCC-CCHHHHHHHHHHhhhcCCeeeC-
Confidence 0124666 467876542 356778899999 79999998 9999999999988 69999
Q ss_pred ccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 011969 370 HTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 447 (474)
Q Consensus 370 ~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 447 (474)
||..|+||++++||||||+|||+|+.+++.|++.++.+|++++ |+++|+++|..++++ ++.+++|++++++.
T Consensus 578 --PS~~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~g~nGlLVdP~D~eaLA~AL~~LL~D----pelr~~m~~~gr~~ 651 (1050)
T TIGR02468 578 --PAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIHRVLDNGLLVDPHDQQAIADALLKLVAD----KQLWAECRQNGLKN 651 (1050)
T ss_pred --CcccCCCCHHHHHHHHhCCCEEEeCCCCcHHHhccCCcEEEECCCCHHHHHHHHHHHhhC----HHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999996 799999999999984 89999999999988
Q ss_pred ccccchHHHHHHHHHHHH
Q 011969 448 GLSARWATEWEEHAKPLI 465 (474)
Q Consensus 448 ~~~~~w~~~~~~~~~~~~ 465 (474)
+.+|+|+...+++++.+.
T Consensus 652 v~~FSWe~ia~~yl~~i~ 669 (1050)
T TIGR02468 652 IHLFSWPEHCKTYLSRIA 669 (1050)
T ss_pred HHHCCHHHHHHHHHHHHH
Confidence 777888877766654443
No 22
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=3.2e-31 Score=268.23 Aligned_cols=348 Identities=14% Similarity=0.124 Sum_probs=242.6
Q ss_pred EEEEEeC----CCCCCchHH-HHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHH
Q 011969 7 ACVVVLG----DLGRSPRMQ-YQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLL 81 (474)
Q Consensus 7 ~~i~~~~----~~g~~~r~~-~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~ 81 (474)
++|+... ..||..+.. ..+..|.++ ||+|+|++....... ......|+++++++... ..... .....+
T Consensus 2 i~~i~~~~~~~~~gG~~~~~~~la~~L~~~-g~~v~v~~~~~~~~~-~~~~~~~i~~~~~~~~~--~~~~~---~~~~~~ 74 (363)
T cd04955 2 IAIIGTRGIPAKYGGFETFVEELAPRLVAR-GHEVTVYCRSPYPKQ-KETEYNGVRLIHIPAPE--IGGLG---TIIYDI 74 (363)
T ss_pred eEEEecCcCCcccCcHHHHHHHHHHHHHhc-CCCEEEEEccCCCCC-cccccCCceEEEcCCCC--ccchh---hhHHHH
Confidence 4555442 346655544 456777775 999999997654332 13445689998887211 11111 111111
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHH
Q 011969 82 LKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEK 161 (474)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~ 161 (474)
. .++....+..++|++|...+.. ..+..++ +..+.|++++.|+..+.. .........++++.++
T Consensus 75 -~-------~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~-~~~~~~~v~~~h~~~~~~----~~~~~~~~~~~~~~~~ 138 (363)
T cd04955 75 -L-------AILHALFVKRDIDHVHALGPAI---APFLPLL-RLKGKKVVVNMDGLEWKR----AKWGRPAKRYLKFGEK 138 (363)
T ss_pred -H-------HHHHHHhccCCeEEEEecCccH---HHHHHHH-HhcCCCEEEEccCcceee----cccccchhHHHHHHHH
Confidence 0 1112221235666666665432 2223333 344889999999874311 1122333556778888
Q ss_pred HHhhhcCEEEEeCHHHHHHHHHHhCCceEEEeCCCCC-CCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcc
Q 011969 162 YYGKMANGCLCVTQAMQHELAQNWGIKATVLYDQPPE-FFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKAD 240 (474)
Q Consensus 162 ~~~~~ad~vi~vS~~~~~~l~~~~~~~~~vi~n~~~~-~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (474)
...+.||.++++|+.+++.+.+.++.+..+++|+.+. .+.+ ....+..++
T Consensus 139 ~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~ngv~~~~~~~-----~~~~~~~~~------------------------ 189 (363)
T cd04955 139 LAVKFADRLIADSPGIKEYLKEKYGRDSTYIPYGADHVVSSE-----EDEILKKYG------------------------ 189 (363)
T ss_pred HHHhhccEEEeCCHHHHHHHHHhcCCCCeeeCCCcChhhcch-----hhhhHHhcC------------------------
Confidence 9999999999999999999988788777899998542 2222 111122222
Q ss_pred hhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEE
Q 011969 241 ETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF 320 (474)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 320 (474)
. .+.+ .++|+|++.+.||++.+++|++.+. ++++|
T Consensus 190 -------------~-~~~~-~i~~~G~~~~~Kg~~~li~a~~~l~------------------------------~~~~l 224 (363)
T cd04955 190 -------------L-EPGR-YYLLVGRIVPENNIDDLIEAFSKSN------------------------------SGKKL 224 (363)
T ss_pred -------------C-CCCc-EEEEEecccccCCHHHHHHHHHhhc------------------------------cCceE
Confidence 1 1223 5789999999999999999998762 36899
Q ss_pred EEEeCCCChHHHHHHHH-HcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCC-CCCchHHHHHHhcCCcEEEecc
Q 011969 321 IITGKGPDKESYEEKIR-RLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSG-LDLPMKVVDMFGCGLPVCAVSY 397 (474)
Q Consensus 321 ~ivG~g~~~~~~~~~~~-~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~-e~~p~kv~Eama~G~PVia~~~ 397 (474)
+|+|+|+....+.+.++ +++. ++|.|+|. ++.+++..+|..||++++ ++.. |++|++++|||+||+|||+++.
T Consensus 225 ~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~-~~~~~~~~~~~~ad~~v~---ps~~~e~~~~~~~EAma~G~PvI~s~~ 300 (363)
T cd04955 225 VIVGNADHNTPYGKLLKEKAAADPRIIFVGP-IYDQELLELLRYAALFYL---HGHSVGGTNPSLLEAMAYGCPVLASDN 300 (363)
T ss_pred EEEcCCCCcchHHHHHHHHhCCCCcEEEccc-cChHHHHHHHHhCCEEEe---CCccCCCCChHHHHHHHcCCCEEEecC
Confidence 99999977666766665 5666 79999998 999999999999999999 4655 9999999999999999999999
Q ss_pred cccccccccCCcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcc-ccchHHHHHHHH
Q 011969 398 SCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGL-SARWATEWEEHA 461 (474)
Q Consensus 398 ~~~~e~v~~~~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~ 461 (474)
++..|++.+ +|.++++.+.++++|..++++ ++.+.++++++++... .++|+..-++..
T Consensus 301 ~~~~e~~~~--~g~~~~~~~~l~~~i~~l~~~----~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 359 (363)
T cd04955 301 PFNREVLGD--KAIYFKVGDDLASLLEELEAD----PEEVSAMAKAARERIREKYTWEKIADQYE 359 (363)
T ss_pred CccceeecC--CeeEecCchHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999865 788887655599999999985 7888999999988763 478777555533
No 23
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=2e-31 Score=267.27 Aligned_cols=342 Identities=19% Similarity=0.248 Sum_probs=241.3
Q ss_pred CchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 011969 18 SPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCV 97 (474)
Q Consensus 18 ~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (474)
..++...+..|+++ ||+|++++........... ..+.+..... ...............+.+. +
T Consensus 17 ~~~~~~l~~~L~~~-g~~v~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----------~- 79 (364)
T cd03814 17 VRTLQRLVEHLRAR-GHEVLVIAPGPFRESEGPA--RVVPVPSVPL--PGYPEIRLALPPRRRVRRL-----------L- 79 (364)
T ss_pred ehHHHHHHHHHHHC-CCEEEEEeCCchhhccCCC--Cceeeccccc--CcccceEecccchhhHHHH-----------H-
Confidence 44566777888886 9999999977543221111 2233322220 0001111111111111111 1
Q ss_pred hcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHH
Q 011969 98 KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAM 177 (474)
Q Consensus 98 ~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~ 177 (474)
+..+||+||++.+.... ..+..+++..++|+++++|+....... .............+++.+.+.+|.++++|+.+
T Consensus 80 ~~~~pdii~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~ 155 (364)
T cd03814 80 DAFAPDVVHIATPGPLG--LAALRAARRLGIPVVTSYHTDFPEYLR--YYGLGPLSWLAWAYLRWFHNRADRVLVPSPSL 155 (364)
T ss_pred HhcCCCEEEEeccchhh--HHHHHHHHHcCCCEEEEEecChHHHhh--hcccchHhHhhHHHHHHHHHhCCEEEeCCHHH
Confidence 23789999999754332 234555667889999999987432221 11223334444677788889999999999999
Q ss_pred HHHHHHHhCCceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCC
Q 011969 178 QHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKP 256 (474)
Q Consensus 178 ~~~l~~~~~~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (474)
++.+.+....++.+++++.+ +.|.+.... ...+.+++ .
T Consensus 156 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~---------------------------------------~ 194 (364)
T cd03814 156 ADELRARGFRRVRLWPRGVDTELFHPRRRD--EALRARLG---------------------------------------P 194 (364)
T ss_pred HHHHhccCCCceeecCCCccccccCccccc--HHHHHHhC---------------------------------------C
Confidence 98666543445888888844 555544211 11111111 2
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHHH
Q 011969 257 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKI 336 (474)
Q Consensus 257 ~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~ 336 (474)
+.+..++|+|++.+.||++.++++++.+.+ . ++++|+|+|+|++.+.++
T Consensus 195 ~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~---------------------------~-~~~~l~i~G~~~~~~~~~--- 243 (364)
T cd03814 195 PDRPVLLYVGRLAPEKNLEALLDADLPLRR---------------------------R-PPVRLVIVGDGPARARLE--- 243 (364)
T ss_pred CCCeEEEEEeccccccCHHHHHHHHHHhhh---------------------------c-CCceEEEEeCCchHHHHh---
Confidence 233489999999999999999999999866 3 789999999998766554
Q ss_pred HHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEeC--
Q 011969 337 RRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS-- 414 (474)
Q Consensus 337 ~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~-- 414 (474)
...++|.|.|. ++.+++..+|+.||++++ ++..|++|++++||||||+|||+++.++..|++.++++|++++
T Consensus 244 --~~~~~v~~~g~-~~~~~~~~~~~~~d~~l~---~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i~~~~~g~~~~~~ 317 (364)
T cd03814 244 --ARYPNVHFLGF-LDGEELAAAYASADVFVF---PSRTETFGLVVLEAMASGLPVVAPDAGGPADIVTDGENGLLVEPG 317 (364)
T ss_pred --ccCCcEEEEec-cCHHHHHHHHHhCCEEEE---CcccccCCcHHHHHHHcCCCEEEcCCCCchhhhcCCcceEEcCCC
Confidence 11268999998 999999999999999999 6777899999999999999999999999999999999999986
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Q 011969 415 SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAK 462 (474)
Q Consensus 415 ~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 462 (474)
+.++++++|..++++ ++.++++++++.+.+.+++|+...+++.+
T Consensus 318 ~~~~l~~~i~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (364)
T cd03814 318 DAEAFAAALAALLAD----PELRRRMAARARAEAERRSWEAFLDNLLE 361 (364)
T ss_pred CHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 588899999999984 88999999999998778888877766543
No 24
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=100.00 E-value=3.8e-31 Score=262.35 Aligned_cols=345 Identities=20% Similarity=0.227 Sum_probs=245.6
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHH
Q 011969 7 ACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLI 86 (474)
Q Consensus 7 ~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (474)
++++.....|....+...+..|.++ ||+|++++....... .....+++++.++.... ... ....+.....+
T Consensus 2 Il~i~~~~~g~~~~~~~l~~~L~~~-g~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~-- 72 (359)
T cd03808 2 ILHIVTVDGGLYSFRLPLIKALRAA-GYEVHVVAPPGDELE--ELEALGVKVIPIPLDRR---GIN-PFKDLKALLRL-- 72 (359)
T ss_pred eeEEEecchhHHHHHHHHHHHHHhc-CCeeEEEecCCCccc--ccccCCceEEecccccc---ccC-hHhHHHHHHHH--
Confidence 3444444334445566677888776 999999997755432 34566888888872111 111 11111111111
Q ss_pred HHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHh-hCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhh
Q 011969 87 QFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASS-LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGK 165 (474)
Q Consensus 87 ~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 165 (474)
. ..+ +..+||+||++... +.. ...+.++ ..+.+++++.|+.++.. .........+..+++...+
T Consensus 73 -----~-~~~-~~~~~dvv~~~~~~--~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 137 (359)
T cd03808 73 -----Y-RLL-RKERPDIVHTHTPK--PGI-LGRLAARLAGVPKVIYTVHGLGFVF-----TSGGLKRRLYLLLERLALR 137 (359)
T ss_pred -----H-HHH-HhcCCCEEEEcccc--chh-HHHHHHHHcCCCCEEEEecCcchhh-----ccchhHHHHHHHHHHHHHh
Confidence 0 111 23789999998742 222 3444444 56677888899875321 1112244566788899999
Q ss_pred hcCEEEEeCHHHHHHHHHHhCC----ceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcc
Q 011969 166 MANGCLCVTQAMQHELAQNWGI----KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKAD 240 (474)
Q Consensus 166 ~ad~vi~vS~~~~~~l~~~~~~----~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (474)
.+|.++++|+.+++.+.+.... .+.+.+++.+ +.+.+....
T Consensus 138 ~~d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 183 (359)
T cd03808 138 FTDKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEP---------------------------------- 183 (359)
T ss_pred hccEEEEcCHHHHHHHHHhcCCCcCceEEecCCCCChhhcCccccc----------------------------------
Confidence 9999999999999998886543 2444444433 222221100
Q ss_pred hhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEE
Q 011969 241 ETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF 320 (474)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 320 (474)
..+++..++|+|++.+.||++.+++++..+.++ .++++|
T Consensus 184 --------------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~---------------------------~~~~~l 222 (359)
T cd03808 184 --------------IPEDDPVFLFVARLLKDKGIDELLEAARILKAK---------------------------GPNVRL 222 (359)
T ss_pred --------------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhc---------------------------CCCeEE
Confidence 023345999999999999999999999998762 688999
Q ss_pred EEEeCCCChHHHHHH-HHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc
Q 011969 321 IITGKGPDKESYEEK-IRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 398 (474)
Q Consensus 321 ~ivG~g~~~~~~~~~-~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~ 398 (474)
+|+|.++........ +.+++. ++|.|.|. .+++..+|+.||++++ ++..|++|++++|||+||+|||+++.+
T Consensus 223 ~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~adi~i~---ps~~e~~~~~~~Ea~~~G~Pvi~s~~~ 296 (359)
T cd03808 223 LLVGDGDEENPAAILEIEKLGLEGRVEFLGF---RDDVPELLAAADVFVL---PSYREGLPRVLLEAMAMGRPVIATDVP 296 (359)
T ss_pred EEEcCCCcchhhHHHHHHhcCCcceEEEeec---cccHHHHHHhccEEEe---cCcccCcchHHHHHHHcCCCEEEecCC
Confidence 999999876655543 566666 69999997 7899999999999999 577799999999999999999999999
Q ss_pred ccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-ccccchHHHHHHH
Q 011969 399 CIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM-GLSARWATEWEEH 460 (474)
Q Consensus 399 ~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~ 460 (474)
+..+++.++.+|++++ |+++++++|..++++ ++.++++++++++. .+.++|+...++.
T Consensus 297 ~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 357 (359)
T cd03808 297 GCREAVIDGVNGFLVPPGDAEALADAIERLIED----PELRARMGQAARKRAEEEFDEEIVVKKL 357 (359)
T ss_pred CchhhhhcCcceEEECCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 9999999899999996 699999999999884 88899999999887 5778877665543
No 25
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=2e-31 Score=269.63 Aligned_cols=328 Identities=17% Similarity=0.139 Sum_probs=230.4
Q ss_pred CCCCCchHHH-HHHHHHhhCCCeEEEEecCCCC-CCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 011969 14 DLGRSPRMQY-QALSLARQMSLEVDVVAYGGSK-PHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFML 91 (474)
Q Consensus 14 ~~g~~~r~~~-~a~~l~~~~g~eV~Vv~~~~~~-~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (474)
+.||..+... .+..|.+. ||+|++++..... .........++.++.++ .. .......+..+.+.
T Consensus 10 ~~GG~~~~~~~l~~~L~~~-~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~------- 75 (358)
T cd03812 10 NRGGIETFIMNYYRNLDRS-KIQFDFLVTSKEEGDYDDEIEKLGGKIYYIP--AR----KKNPLKYFKKLYKL------- 75 (358)
T ss_pred CCccHHHHHHHHHHhcCcc-ceEEEEEEeCCCCcchHHHHHHcCCeEEEec--CC----CccHHHHHHHHHHH-------
Confidence 5666666554 45666655 9999999977543 12223334577777755 11 11122222222111
Q ss_pred HHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCc-EEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEE
Q 011969 92 LWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSA-FIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGC 170 (474)
Q Consensus 92 ~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~v 170 (474)
+ +..+||+||++++. ...+...+.+ ..+.+ ++++.|+..+... .........++++.+.+.+|.+
T Consensus 76 ----~-~~~~~Dvv~~~~~~--~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 141 (358)
T cd03812 76 ----I-KKNKYDIVHVHGSS--ASGFILLAAK-KAGVKVRIAHSHNTSDSHD------KKKKILKYKVLRKLINRLATDY 141 (358)
T ss_pred ----H-hcCCCCEEEEeCcc--hhHHHHHHHh-hCCCCeEEEEecccccccc------ccchhhHHHHHHHHHHhcCCEE
Confidence 1 23799999999865 2232333333 34444 5678888742111 1111111146677888899999
Q ss_pred EEeCHHHHHHHHHHh-CCceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccc
Q 011969 171 LCVTQAMQHELAQNW-GIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLA 248 (474)
Q Consensus 171 i~vS~~~~~~l~~~~-~~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (474)
+++|+...+.+.+.. ..++.+++|+.+ ..|.+.+.. +.. +...+
T Consensus 142 i~~s~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~-~~~-~~~~~-------------------------------- 187 (358)
T cd03812 142 LACSEEAGKWLFGKVKNKKFKVIPNGIDLEKFIFNEEI-RKK-RRELG-------------------------------- 187 (358)
T ss_pred EEcCHHHHHHHHhCCCcccEEEEeccCcHHHcCCCchh-hhH-HHHcC--------------------------------
Confidence 999999998886642 345899999954 444333211 111 12211
Q ss_pred ccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC
Q 011969 249 GIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD 328 (474)
Q Consensus 249 ~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~ 328 (474)
. .+.+..++|+|++.+.||++.+++|+..+.++ .++++++|+|+|+.
T Consensus 188 -----~-~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~---------------------------~~~~~l~ivG~g~~ 234 (358)
T cd03812 188 -----I-LEDKFVIGHVGRFSEQKNHEFLIEIFAELLKK---------------------------NPNAKLLLVGDGEL 234 (358)
T ss_pred -----C-CCCCEEEEEEeccccccChHHHHHHHHHHHHh---------------------------CCCeEEEEEeCCch
Confidence 1 22344899999999999999999999999873 68999999999999
Q ss_pred hHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccC
Q 011969 329 KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVD 407 (474)
Q Consensus 329 ~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~ 407 (474)
.+.+++.++++++ ++|.|.|. .+++..+|+.||++|+ ||..|++|++++||||||+|||+++.++..+++.++
T Consensus 235 ~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~adi~v~---ps~~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~~~ 308 (358)
T cd03812 235 EEEIKKKVKELGLEDKVIFLGV---RNDVPELLQAMDVFLF---PSLYEGLPLVLIEAQASGLPCILSDTITKEVDLTDL 308 (358)
T ss_pred HHHHHHHHHhcCCCCcEEEecc---cCCHHHHHHhcCEEEe---cccccCCCHHHHHHHHhCCCEEEEcCCchhhhhccC
Confidence 9999999999988 69999997 7899999999999999 677899999999999999999999999999999884
Q ss_pred CcEEEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011969 408 KNGLLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 446 (474)
Q Consensus 408 ~~G~l~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 446 (474)
..++..+ ++++++++|.+++++ ++.++++++.+..
T Consensus 309 ~~~~~~~~~~~~~a~~i~~l~~~----~~~~~~~~~~~~~ 344 (358)
T cd03812 309 VKFLSLDESPEIWAEEILKLKSE----DRRERSSESIKKK 344 (358)
T ss_pred ccEEeCCCCHHHHHHHHHHHHhC----cchhhhhhhhhhc
Confidence 4444444 479999999999995 7777777777765
No 26
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=7.8e-31 Score=261.18 Aligned_cols=350 Identities=21% Similarity=0.221 Sum_probs=253.0
Q ss_pred eEEEEEeCCCCCCchHHH-HHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHH
Q 011969 6 RACVVVLGDLGRSPRMQY-QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKP 84 (474)
Q Consensus 6 ~~~i~~~~~~g~~~r~~~-~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (474)
++.++.....||..++.. .+..|.++ |++|.+++..............+++++.++. ... .........+.+.
T Consensus 2 i~~i~~~~~~gG~~~~~~~l~~~l~~~-~~~v~~~~~~~~~~~~~~~~~~~i~v~~~~~--~~~---~~~~~~~~~~~~~ 75 (365)
T cd03807 2 VLHVITGLDVGGAERMLVRLLKGLDRD-RFEHVVISLTDRGELGEELEEAGVPVYCLGK--RPG---RPDPGALLRLYKL 75 (365)
T ss_pred eEEEEeeccCccHHHHHHHHHHHhhhc-cceEEEEecCcchhhhHHHHhcCCeEEEEec--ccc---cccHHHHHHHHHH
Confidence 455566556688777654 45666675 9999999976543333334456888888872 111 1111122222222
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhh-CCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHH
Q 011969 85 LIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSL-RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYY 163 (474)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 163 (474)
+ +..+||+||++.+... .......+. .+.+++++.|+..... .........++++.+
T Consensus 76 ~------------~~~~~div~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~ 133 (365)
T cd03807 76 I------------RRLRPDVVHTWMYHAD---LYGGLAARLAGVPPVIWGIRHSDLDL-------GKKSTRLVARLRRLL 133 (365)
T ss_pred H------------HhhCCCEEEecccccc---HHHHHHHHhcCCCcEEEEecCCcccc-------cchhHhHHHHHHHHh
Confidence 2 2278999999875322 223333444 6889999999984311 123334556778888
Q ss_pred hhhcCEEEEeCHHHHHHHHHHhCC---ceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCc
Q 011969 164 GKMANGCLCVTQAMQHELAQNWGI---KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKA 239 (474)
Q Consensus 164 ~~~ad~vi~vS~~~~~~l~~~~~~---~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 239 (474)
.+.+|.++++|+..++.+.+. +. ++.+++|+.+ ..|.+... .....+++++
T Consensus 134 ~~~~~~~i~~s~~~~~~~~~~-~~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~----------------------- 188 (365)
T cd03807 134 SSFIPLIVANSAAAAEYHQAI-GYPPKKIVVIPNGVDTERFSPDLD-ARARLREELG----------------------- 188 (365)
T ss_pred ccccCeEEeccHHHHHHHHHc-CCChhheeEeCCCcCHHhcCCccc-chHHHHHhcC-----------------------
Confidence 889999999999999888774 43 3788999844 34433321 2222333333
Q ss_pred chhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEE
Q 011969 240 DETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLL 319 (474)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (474)
++ +....++|+|++.+.||++.+++++..+.++ .++++
T Consensus 189 --------------~~-~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~---------------------------~~~~~ 226 (365)
T cd03807 189 --------------LP-EDTFLIGIVARLHPQKDHATLLRAAALLLKK---------------------------FPNAR 226 (365)
T ss_pred --------------CC-CCCeEEEEecccchhcCHHHHHHHHHHHHHh---------------------------CCCeE
Confidence 22 2334889999999999999999999998773 68899
Q ss_pred EEEEeCCCChHHHHHHHH-HcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc
Q 011969 320 FIITGKGPDKESYEEKIR-RLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 397 (474)
Q Consensus 320 l~ivG~g~~~~~~~~~~~-~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~ 397 (474)
|+|+|.++..+..++... ++++ ++|.|.|. .+++..+|+.||++++ |+..|++|++++|||+||+|||+++.
T Consensus 227 l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~adi~v~---ps~~e~~~~~~~Ea~a~g~PvI~~~~ 300 (365)
T cd03807 227 LLLVGDGPDRANLELLALKELGLEDKVILLGE---RSDVPALLNALDVFVL---SSLSEGFPNVLLEAMACGLPVVATDV 300 (365)
T ss_pred EEEecCCcchhHHHHHHHHhcCCCceEEEccc---cccHHHHHHhCCEEEe---CCccccCCcHHHHHHhcCCCEEEcCC
Confidence 999999988887777776 7787 68999987 6889999999999999 67779999999999999999999999
Q ss_pred cccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHHH
Q 011969 398 SCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHAK 462 (474)
Q Consensus 398 ~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~ 462 (474)
++..|++.+ +|++++ |+++++++|..++++ ++.++++++++.+.+ +.++|+...++..+
T Consensus 301 ~~~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 362 (365)
T cd03807 301 GDNAELVGD--TGFLVPPGDPEALAEAIEALLAD----PALRQALGEAARERIEENFSIEAMVEAYEE 362 (365)
T ss_pred CChHHHhhc--CCEEeCCCCHHHHHHHHHHHHhC----hHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999976 888885 799999999999995 788889999998865 45788776655443
No 27
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=5.2e-31 Score=277.22 Aligned_cols=358 Identities=15% Similarity=0.131 Sum_probs=242.5
Q ss_pred EeCCCC-CCchHHHHHH-HHHhh-CCCeEEEEecCCCCC----------CcceeccCCeEEEEee-c-CCCCCCCCCchh
Q 011969 11 VLGDLG-RSPRMQYQAL-SLARQ-MSLEVDVVAYGGSKP----------HAAILEHPSIHIHTMT-Q-WPTIPRGLPKVL 75 (474)
Q Consensus 11 ~~~~~g-~~~r~~~~a~-~l~~~-~g~eV~Vv~~~~~~~----------~~~~~~~~gi~i~~~~-~-~~~~~~~~~~~~ 75 (474)
...+.| |+.|+.-.|. ++.+. .+++|+|+|.+.... ...+...+++++.++. . .......++++.
T Consensus 8 p~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 87 (419)
T cd03806 8 PYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEASTYPRFT 87 (419)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccccCCcee
Confidence 334455 8999888764 44443 278999999664432 1233445677766652 1 122233344433
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCch---hhhhhhccC-----
Q 011969 76 KPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFG---YTLLSLSLG----- 147 (474)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~---~~~~~~~~~----- 147 (474)
.....+...+. .+....+ .+|||++.+.+...... +. +.+.+.|+|+.+|-.. ........+
T Consensus 88 ~~~~~~~~~~~-----~~~~~~~-~~pDv~i~~~g~~~~~~-~~---~~~~~~~~i~y~h~P~~~~d~l~~~~~~~~~~~ 157 (419)
T cd03806 88 LLGQALGSMIL-----GLEALLK-LVPDIFIDTMGYPFTYP-LV---RLLGGCPVGAYVHYPTISTDMLQKVRSREASYN 157 (419)
T ss_pred eHHHHHHHHHH-----HHHHHHh-cCCCEEEEcCCcccHHH-HH---HHhcCCeEEEEecCCcchHHHHHHHhhcccccc
Confidence 22222222211 1122212 57999988874333222 22 2334789999999221 111111111
Q ss_pred ------CCc---hHH----HHHHHHHHHHhhhcCEEEEeCHHHHHHHHHHhCC--ceEEEeCCCC-CCCCCCChHHHHHH
Q 011969 148 ------RRS---HFV----SIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGI--KATVLYDQPP-EFFHPTSLEEKHEL 211 (474)
Q Consensus 148 ------~~~---~~~----~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~--~~~vi~n~~~-~~f~~~~~~~~~~~ 211 (474)
+.+ ..+ +++.++++...+.||.++++|+.+++.+.+.++. ++.++|++.+ +.|.+...
T Consensus 158 ~~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~~~~~~~~~vi~~gvd~~~~~~~~~------ 231 (419)
T cd03806 158 NSATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSLWKRNTKPSIVYPPCDVEELLKLPL------ 231 (419)
T ss_pred CccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHHhCcCCCcEEEcCCCCHHHhccccc------
Confidence 111 112 2334678888999999999999999999887765 5889998744 33322210
Q ss_pred HHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhh
Q 011969 212 FCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAI 291 (474)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~ 291 (474)
....+...++|+|++.+.||++.+++|++.+.++.
T Consensus 232 ------------------------------------------~~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~--- 266 (419)
T cd03806 232 ------------------------------------------DEKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRL--- 266 (419)
T ss_pred ------------------------------------------ccccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhC---
Confidence 00122338999999999999999999999987630
Q ss_pred hccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC------hHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhccc
Q 011969 292 LNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD------KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSAD 364 (474)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~------~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~ad 364 (474)
+....++++|+|+|++.. .+++++.++++++ ++|.|+|. +|.+++..+|+.||
T Consensus 267 -------------------~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~-v~~~~l~~~l~~ad 326 (419)
T cd03806 267 -------------------PEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVN-APFEELLEELSTAS 326 (419)
T ss_pred -------------------cccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecC-CCHHHHHHHHHhCe
Confidence 000014699999998742 3567788899999 79999998 99999999999999
Q ss_pred EEEeeccCCCCCCCchHHHHHHhcCCcEEEecccc-cccccc---cCCcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHH
Q 011969 365 LGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC-IEELVK---VDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKL 440 (474)
Q Consensus 365 v~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~-~~e~v~---~~~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~ 440 (474)
+++. ++..|+||++++||||||+|||+++.++ ..+++. ++.+|++++|+++++++|.+++++ +++.++.+
T Consensus 327 v~v~---~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~~d~~~la~ai~~ll~~---~~~~~~~~ 400 (419)
T cd03806 327 IGLH---TMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLASTAEEYAEAIEKILSL---SEEERLRI 400 (419)
T ss_pred EEEE---CCccCCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEeCCHHHHHHHHHHHHhC---CHHHHHHH
Confidence 9999 6778999999999999999999999765 567887 799999999999999999999986 45566667
Q ss_pred HHHHHHhccccchHH
Q 011969 441 RNGTLEMGLSARWAT 455 (474)
Q Consensus 441 ~~~~~~~~~~~~w~~ 455 (474)
++++++...+++|+.
T Consensus 401 ~~~~~~~~~~fs~~~ 415 (419)
T cd03806 401 RRAARSSVKRFSDEE 415 (419)
T ss_pred HHHHHHHHHhhCHHH
Confidence 777776666777765
No 28
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=4.2e-31 Score=281.56 Aligned_cols=287 Identities=17% Similarity=0.143 Sum_probs=212.6
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCC---CcEEEEecCchhhhh-h----hccCCC-chHH-HH-----HHHHHHHHh
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRR---SAFIVDWHNFGYTLL-S----LSLGRR-SHFV-SI-----YRWIEKYYG 164 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~h~~~~~~~-~----~~~~~~-~~~~-~~-----~~~~e~~~~ 164 (474)
.+||+||+|. ..+.+++.+++...+ +|+|+++|++.+.-. . ...+.. ..+. .. ...+.+...
T Consensus 127 ~~~DiiH~hd---w~~~~~~~~l~~~~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 203 (473)
T TIGR02095 127 WQPDVVHAHD---WHTALVPALLKAVYRPNPIKTVFTIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGI 203 (473)
T ss_pred CCCCEEEECC---cHHHHHHHHHHhhccCCCCCEEEEcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHH
Confidence 6899999999 445555556655544 899999999853110 0 000000 0000 00 012356677
Q ss_pred hhcCEEEEeCHHHHHHHHHH-h-----------CCceEEEeCCCC-CCCCCCCh----------------HHHHHHHHhh
Q 011969 165 KMANGCLCVTQAMQHELAQN-W-----------GIKATVLYDQPP-EFFHPTSL----------------EEKHELFCRL 215 (474)
Q Consensus 165 ~~ad~vi~vS~~~~~~l~~~-~-----------~~~~~vi~n~~~-~~f~~~~~----------------~~~~~~~~~l 215 (474)
+.||.+++||+.+++++.+. + ..++.+|+||.+ +.|.|... ..+..+++++
T Consensus 204 ~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~ 283 (473)
T TIGR02095 204 VYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAENKEALQEEL 283 (473)
T ss_pred HhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhhHHHHHHHc
Confidence 89999999999999887642 1 235889999954 66766421 1233445555
Q ss_pred hhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccC
Q 011969 216 NKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNED 295 (474)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~ 295 (474)
|. ...++.+ +++|+|++.+.||++.+++|+..+.+
T Consensus 284 gl-----------------------------------~~~~~~~-~i~~vGrl~~~Kg~~~li~a~~~l~~--------- 318 (473)
T TIGR02095 284 GL-----------------------------------PVDDDVP-LFGVISRLTQQKGVDLLLAALPELLE--------- 318 (473)
T ss_pred CC-----------------------------------CccCCCC-EEEEEecCccccChHHHHHHHHHHHH---------
Confidence 51 0012344 89999999999999999999999876
Q ss_pred CCchhhHhHhhhcCCccccCCCEEEEEEeCCC--ChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCC
Q 011969 296 DSTNEEVFLKEISDGKQYLYPRLLFIITGKGP--DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS 373 (474)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~--~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s 373 (474)
.+++|+|+|+|+ ..+++++.+++++ .++.|.+. .+.+++..+|+.||++++ ||
T Consensus 319 --------------------~~~~lvi~G~g~~~~~~~l~~~~~~~~-~~v~~~~~-~~~~~~~~~~~~aDv~l~---pS 373 (473)
T TIGR02095 319 --------------------LGGQLVVLGTGDPELEEALRELAERYP-GNVRVIIG-YDEALAHLIYAGADFILM---PS 373 (473)
T ss_pred --------------------cCcEEEEECCCCHHHHHHHHHHHHHCC-CcEEEEEc-CCHHHHHHHHHhCCEEEe---CC
Confidence 359999999995 3456777776654 57888887 788889999999999999 78
Q ss_pred CCCCCchHHHHHHhcCCcEEEecccccccccccC------CcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 011969 374 SGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVD------KNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTL 445 (474)
Q Consensus 374 ~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~------~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~ 445 (474)
..|+||++++|||+||+|||+++.+++.|+|.++ .+|++++ |+++++++|.++++.+..+++.+++|++++.
T Consensus 374 ~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~ 453 (473)
T TIGR02095 374 RFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRLYRQDPSLWEALQKNAM 453 (473)
T ss_pred CcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 8999999999999999999999999999999988 8999996 7999999999988744445888999999886
Q ss_pred HhccccchHHHHHHHH
Q 011969 446 EMGLSARWATEWEEHA 461 (474)
Q Consensus 446 ~~~~~~~w~~~~~~~~ 461 (474)
+ +.++|+...++..
T Consensus 454 ~--~~fsw~~~a~~~~ 467 (473)
T TIGR02095 454 S--QDFSWDKSAKQYV 467 (473)
T ss_pred c--cCCCcHHHHHHHH
Confidence 4 4788887776643
No 29
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=2.3e-30 Score=261.28 Aligned_cols=345 Identities=16% Similarity=0.180 Sum_probs=238.0
Q ss_pred eEEEEEeCCCCCCchHHHH-HHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHH
Q 011969 6 RACVVVLGDLGRSPRMQYQ-ALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKP 84 (474)
Q Consensus 6 ~~~i~~~~~~g~~~r~~~~-a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (474)
++++......||..|.... +..|.++ ||+|++++..+.... ..... ....+.++ . ..........+..+.
T Consensus 2 il~~~~~~~~gG~~~~~~~l~~~L~~~-g~~v~v~~~~~~~~~-~~~~~-~~~~~~~~---~-~~~~~~~~~~~~~~~-- 72 (360)
T cd04951 2 ILYVITGLGLGGAEKQVVDLADQFVAK-GHQVAIISLTGESEV-KPPID-ATIILNLN---M-SKNPLSFLLALWKLR-- 72 (360)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhcccC-CceEEEEEEeCCCCc-cchhh-ccceEEec---c-cccchhhHHHHHHHH--
Confidence 4455554557787776654 5666665 999999996543321 11111 11122232 1 111111111111111
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhh-CCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHH
Q 011969 85 LIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSL-RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYY 163 (474)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 163 (474)
.++ +..+||+||+|.+.. ..+..++++. .+.+++++.|+... ... ...++.+..
T Consensus 73 ---------~~~-~~~~pdiv~~~~~~~---~~~~~l~~~~~~~~~~v~~~h~~~~---------~~~---~~~~~~~~~ 127 (360)
T cd04951 73 ---------KIL-RQFKPDVVHAHMFHA---NIFARLLRLFLPSPPLICTAHSKNE---------GGR---LRMLAYRLT 127 (360)
T ss_pred ---------HHH-HhcCCCEEEEcccch---HHHHHHHHhhCCCCcEEEEeeccCc---------hhH---HHHHHHHHH
Confidence 112 227899999998532 2234444443 46789999998721 111 223445556
Q ss_pred hhhcCEEEEeCHHHHHHHHHHhC---CceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCc
Q 011969 164 GKMANGCLCVTQAMQHELAQNWG---IKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKA 239 (474)
Q Consensus 164 ~~~ad~vi~vS~~~~~~l~~~~~---~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 239 (474)
.+.++.++++|+...+++.+..+ .++.+++|+.+ ..|.+.. .....+++.++
T Consensus 128 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~i~ng~~~~~~~~~~-~~~~~~~~~~~----------------------- 183 (360)
T cd04951 128 DFLSDLTTNVSKEALDYFIASKAFNANKSFVVYNGIDTDRFRKDP-ARRLKIRNALG----------------------- 183 (360)
T ss_pred hhccCceEEEcHHHHHHHHhccCCCcccEEEEccccchhhcCcch-HHHHHHHHHcC-----------------------
Confidence 66788999999999998887643 24889999854 4454432 22333444444
Q ss_pred chhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEE
Q 011969 240 DETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLL 319 (474)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (474)
+.+++ .+++|+|++.+.||++.+++++..+.++ .|+++
T Consensus 184 --------------~~~~~-~~~l~~g~~~~~kg~~~li~a~~~l~~~---------------------------~~~~~ 221 (360)
T cd04951 184 --------------VKNDT-FVILAVGRLVEAKDYPNLLKAFAKLLSD---------------------------YLDIK 221 (360)
T ss_pred --------------cCCCC-EEEEEEeeCchhcCcHHHHHHHHHHHhh---------------------------CCCeE
Confidence 22333 4899999999999999999999988763 58899
Q ss_pred EEEEeCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc
Q 011969 320 FIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 398 (474)
Q Consensus 320 l~ivG~g~~~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~ 398 (474)
|+|+|+|+..+++++.++++++ ++|.|.|. .+++..+|+.||++++ +|..|++|++++|||+||+|||+++.+
T Consensus 222 l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~ad~~v~---~s~~e~~~~~~~Ea~a~G~PvI~~~~~ 295 (360)
T cd04951 222 LLIAGDGPLRATLERLIKALGLSNRVKLLGL---RDDIAAYYNAADLFVL---SSAWEGFGLVVAEAMACELPVVATDAG 295 (360)
T ss_pred EEEEcCCCcHHHHHHHHHhcCCCCcEEEecc---cccHHHHHHhhceEEe---cccccCCChHHHHHHHcCCCEEEecCC
Confidence 9999999999999999999988 68999997 6899999999999999 677799999999999999999999999
Q ss_pred ccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHH
Q 011969 399 CIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHA 461 (474)
Q Consensus 399 ~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 461 (474)
+..|++.+ +|+++. |+++++++|..++++ +++.++.++++.....+.++|+...++..
T Consensus 296 ~~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~~---~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 355 (360)
T cd04951 296 GVREVVGD--SGLIVPISDPEALANKIDEILKM---SGEERDIIGARRERIVKKFSINSIVQQWL 355 (360)
T ss_pred ChhhEecC--CceEeCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999976 677764 799999999999965 46666777666333446788876655544
No 30
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1e-30 Score=263.58 Aligned_cols=335 Identities=16% Similarity=0.185 Sum_probs=241.8
Q ss_pred CCCCCchHHHH-HHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 011969 14 DLGRSPRMQYQ-ALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLL 92 (474)
Q Consensus 14 ~~g~~~r~~~~-a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (474)
+.||..++... +..|.++ ||+|+|++....... ......++++++++.... ... ..........
T Consensus 12 ~~gG~~~~~~~l~~~L~~~-g~~v~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~--------- 76 (357)
T cd03795 12 DRGGIEQVIRDLAEGLAAR-GIEVAVLCASPEPKG-RDEERNGHRVIRAPSLLN--VAS--TPFSPSFFKQ--------- 76 (357)
T ss_pred CCCcHHHHHHHHHHHHHhC-CCceEEEecCCCCcc-hhhhccCceEEEeecccc--ccc--ccccHHHHHH---------
Confidence 35666666544 5677775 999999997754432 222344667777662211 100 0000111000
Q ss_pred HHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEE
Q 011969 93 WFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLC 172 (474)
Q Consensus 93 ~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~ 172 (474)
.. .+..+||+||++.+...... ..+.. ..+.|.++++|+... ....+...+.++++.+.+.||.+++
T Consensus 77 -~~-~~~~~~Dii~~~~~~~~~~~--~~~~~-~~~~~~i~~~h~~~~--------~~~~~~~~~~~~~~~~~~~~d~vi~ 143 (357)
T cd03795 77 -LK-KLAKKADVIHLHFPNPLADL--ALLLL-PRKKPVVVHWHSDIV--------KQKLLLKLYRPLQRRFLRRADAIVA 143 (357)
T ss_pred -HH-hcCCCCCEEEEecCcchHHH--HHHHh-ccCceEEEEEcChhh--------ccchhhhhhhHHHHHHHHhcCEEEe
Confidence 00 23378999999986544332 22222 257899999997621 1223445667888889999999999
Q ss_pred eCHHHHHHHHHHhC--CceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccc
Q 011969 173 VTQAMQHELAQNWG--IKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAG 249 (474)
Q Consensus 173 vS~~~~~~l~~~~~--~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (474)
+|+.+++.+....+ .++.+++|+.+ ..+.+.... .. ...
T Consensus 144 ~s~~~~~~~~~~~~~~~~~~~i~~gi~~~~~~~~~~~-~~---~~~---------------------------------- 185 (357)
T cd03795 144 TSPNYAETSPVLRRFRDKVRVIPLGLDPARYPRPDAL-EE---AIW---------------------------------- 185 (357)
T ss_pred CcHHHHHHHHHhcCCccceEEecCCCChhhcCCcchh-hh---Hhh----------------------------------
Confidence 99999987766543 45889999855 344333211 10 000
Q ss_pred cccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh
Q 011969 250 IDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK 329 (474)
Q Consensus 250 ~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~ 329 (474)
..+..+..++|+|++.+.||++.+++|++.+ .+++|+|+|+|+..
T Consensus 186 ----~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l-------------------------------~~~~l~i~G~g~~~ 230 (357)
T cd03795 186 ----RRAAGRPFFLFVGRLVYYKGLDVLLEAAAAL-------------------------------PDAPLVIVGEGPLE 230 (357)
T ss_pred ----cCCCCCcEEEEecccccccCHHHHHHHHHhc-------------------------------cCcEEEEEeCChhH
Confidence 1123334899999999999999999999886 26999999999998
Q ss_pred HHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccccccccccc-C
Q 011969 330 ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKV-D 407 (474)
Q Consensus 330 ~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~-~ 407 (474)
+.+++.+++++. ++|.|.|. ++.+++..+|+.||++++|.. ...|++|++++|||+||+|||+++.++..+.+.+ +
T Consensus 231 ~~~~~~~~~~~~~~~V~~~g~-v~~~~~~~~~~~ad~~i~ps~-~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~~~ 308 (357)
T cd03795 231 AELEALAAALGLLDRVRFLGR-LDDEEKAALLAACDVFVFPSV-ERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNLHG 308 (357)
T ss_pred HHHHHHHHhcCCcceEEEcCC-CCHHHHHHHHHhCCEEEeCCc-ccccccchHHHHHHHcCCCEEecCCCCchhHHhhCC
Confidence 889999988888 79999998 999999999999999999511 1468999999999999999999999999998886 8
Q ss_pred CcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHH
Q 011969 408 KNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWAT 455 (474)
Q Consensus 408 ~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~ 455 (474)
.+|++++ |+++++++|..++++ ++.+++|++++++.. +.++|+.
T Consensus 309 ~~g~~~~~~d~~~~~~~i~~l~~~----~~~~~~~~~~~~~~~~~~~s~~~ 355 (357)
T cd03795 309 VTGLVVPPGDPAALAEAIRRLLED----PELRERLGEAARERAEEEFTADR 355 (357)
T ss_pred CceEEeCCCCHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHhcchHh
Confidence 9999985 699999999999994 899999999999876 5566653
No 31
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=4.4e-31 Score=265.97 Aligned_cols=328 Identities=20% Similarity=0.174 Sum_probs=238.9
Q ss_pred CCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 011969 17 RSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLC 96 (474)
Q Consensus 17 ~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (474)
....+..++.+|.++ ||+|+|++.......... . . ..... .........+.. +.... .+...+
T Consensus 13 ~~~~~~~~~~~L~~~-g~~v~v~~~~~~~~~~~~-~--~--~~~~~------~~~~~~~~~~~~----~~~~~-~~~~~~ 75 (355)
T cd03799 13 SETFILREILALEAA-GHEVEIFSLRPPEDTLVH-P--E--DRAEL------ARTRYLARSLAL----LAQAL-VLAREL 75 (355)
T ss_pred chHHHHHHHHHHHhC-CCeEEEEEecCccccccc-c--c--ccccc------cchHHHHHHHHH----HHHHH-HHHHHH
Confidence 445567778888886 999999997654321110 0 0 00000 000000111111 11100 111111
Q ss_pred hhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHH
Q 011969 97 VKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQA 176 (474)
Q Consensus 97 ~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~ 176 (474)
+..++|+||+|.+.. ...+..+.++..+.|++++.|+... ...... +.++...+.+|.++++|+.
T Consensus 76 -~~~~~Dii~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-----~~~~~~~~~~~~vi~~s~~ 140 (355)
T cd03799 76 -RRLGIDHIHAHFGTT--PATVAMLASRLGGIPYSFTAHGKDI-------FRSPDA-----IDLDEKLARADFVVAISEY 140 (355)
T ss_pred -HhcCCCEEEECCCCc--hHHHHHHHHHhcCCCEEEEEecccc-------cccCch-----HHHHHHHhhCCEEEECCHH
Confidence 237899999998642 2334566666678999999997631 111110 4566677899999999999
Q ss_pred HHHHHHHHhCC---ceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccccccc
Q 011969 177 MQHELAQNWGI---KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDV 252 (474)
Q Consensus 177 ~~~~l~~~~~~---~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (474)
+++++.+.++. ++.+++|+.+ +.|.+..
T Consensus 141 ~~~~l~~~~~~~~~~~~vi~~~~d~~~~~~~~------------------------------------------------ 172 (355)
T cd03799 141 NRQQLIRLLGCDPDKIHVVHCGVDLERFPPRP------------------------------------------------ 172 (355)
T ss_pred HHHHHHHhcCCCcccEEEEeCCcCHHHcCCcc------------------------------------------------
Confidence 99999886433 4889999855 3333221
Q ss_pred ccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHH
Q 011969 253 FLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 332 (474)
Q Consensus 253 ~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~ 332 (474)
....+.+..++|+|++.+.||++.+++++..+.+ ..++++|+|+|.|+..+.+
T Consensus 173 ~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~---------------------------~~~~~~l~i~G~~~~~~~~ 225 (355)
T cd03799 173 PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKD---------------------------RGIDFRLDIVGDGPLRDEL 225 (355)
T ss_pred ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhh---------------------------cCCCeEEEEEECCccHHHH
Confidence 0012334589999999999999999999999876 2578999999999999999
Q ss_pred HHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCC------CCCchHHHHHHhcCCcEEEecccccccccc
Q 011969 333 EEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSG------LDLPMKVVDMFGCGLPVCAVSYSCIEELVK 405 (474)
Q Consensus 333 ~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~------e~~p~kv~Eama~G~PVia~~~~~~~e~v~ 405 (474)
++.++++++ ++|.|.|. ++.+++..+|+.||++++| +.. |++|++++|||+||+|||+++.++..+++.
T Consensus 226 ~~~~~~~~~~~~v~~~g~-~~~~~l~~~~~~adi~l~~---s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~ 301 (355)
T cd03799 226 EALIAELGLEDRVTLLGA-KSQEEVRELLRAADLFVLP---SVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVE 301 (355)
T ss_pred HHHHHHcCCCCeEEECCc-CChHHHHHHHHhCCEEEec---ceecCCCCccCccHHHHHHHHcCCCEEecCCCCcchhhh
Confidence 999999988 69999998 9999999999999999994 544 999999999999999999999999999999
Q ss_pred cCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHH
Q 011969 406 VDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEE 459 (474)
Q Consensus 406 ~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~ 459 (474)
++.+|++++ |+++++++|..++++ ++.+.++++++++.. ..++|+...++
T Consensus 302 ~~~~g~~~~~~~~~~l~~~i~~~~~~----~~~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 302 DGETGLLVPPGDPEALADAIERLLDD----PELRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred CCCceEEeCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 998999996 799999999999985 788999999998765 56888876643
No 32
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=1.7e-30 Score=269.79 Aligned_cols=331 Identities=15% Similarity=0.159 Sum_probs=230.4
Q ss_pred chHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCch--hHHHHHHHHHHHHHHHHHHHHh
Q 011969 19 PRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKV--LKPVLLLLKPLIQFFMLLWFLC 96 (474)
Q Consensus 19 ~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 96 (474)
+..+.....+++...++|+++|.............+|+.+|+++..........++ ...+..... ++..+
T Consensus 21 g~ve~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 92 (380)
T PRK15484 21 AAVETWIYQVAKRTSIPNRIACIKNPGYPEYTKVNDNCDIHYIGFSRIYKRLFQKWTRLDPLPYSQR--------ILNIA 92 (380)
T ss_pred cHHHHHHHHhhhhccCCeeEEEecCCCCCchhhccCCCceEEEEeccccchhhhhhhccCchhHHHH--------HHHHH
Confidence 44555555555544579999998766522232556678888886111100000110 001111111 11111
Q ss_pred --hhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeC
Q 011969 97 --VKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVT 174 (474)
Q Consensus 97 --~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 174 (474)
....++|+||+|+.+ .+ ...+..+..+.|+++++|+... ....+.++.++++|
T Consensus 93 ~~~~~~~~~vi~v~~~~---~~-~~~~~~~~~~~~~v~~~h~~~~---------------------~~~~~~~~~ii~~S 147 (380)
T PRK15484 93 HKFTITKDSVIVIHNSM---KL-YRQIRERAPQAKLVMHMHNAFE---------------------PELLDKNAKIIVPS 147 (380)
T ss_pred HhcCCCCCcEEEEeCcH---Hh-HHHHHhhCCCCCEEEEEecccC---------------------hhHhccCCEEEEcC
Confidence 123569999999942 22 2444556677899999998721 01124579999999
Q ss_pred HHHHHHHHHHhCC-ceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccccccc
Q 011969 175 QAMQHELAQNWGI-KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDV 252 (474)
Q Consensus 175 ~~~~~~l~~~~~~-~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (474)
+.+++.+.+.++. ++.++|||.+ +.|.+.. ...++++++
T Consensus 148 ~~~~~~~~~~~~~~~i~vIpngvd~~~~~~~~---~~~~~~~~~------------------------------------ 188 (380)
T PRK15484 148 QFLKKFYEERLPNADISIVPNGFCLETYQSNP---QPNLRQQLN------------------------------------ 188 (380)
T ss_pred HHHHHHHHhhCCCCCEEEecCCCCHHHcCCcc---hHHHHHHhC------------------------------------
Confidence 9999988876543 4899999954 4565432 222333444
Q ss_pred ccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh---
Q 011969 253 FLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK--- 329 (474)
Q Consensus 253 ~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~--- 329 (474)
+..+. .+++|+|++.+.||++.|++|+..+.++ .|+++|+|+|+|+..
T Consensus 189 -~~~~~-~~il~~Grl~~~Kg~~~Li~A~~~l~~~---------------------------~p~~~lvivG~g~~~~~~ 239 (380)
T PRK15484 189 -ISPDE-TVLLYAGRISPDKGILLLMQAFEKLATA---------------------------HSNLKLVVVGDPTASSKG 239 (380)
T ss_pred -CCCCC-eEEEEeccCccccCHHHHHHHHHHHHHh---------------------------CCCeEEEEEeCCcccccc
Confidence 22233 3899999999999999999999998763 789999999988642
Q ss_pred --H----HHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCC-CCCCchHHHHHHhcCCcEEEeccccccc
Q 011969 330 --E----SYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS-GLDLPMKVVDMFGCGLPVCAVSYSCIEE 402 (474)
Q Consensus 330 --~----~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~-~e~~p~kv~Eama~G~PVia~~~~~~~e 402 (474)
. .+++.+++++ .+|.|+|. ++.+++..+|+.||++|+ ||. .|+||++++||||||+|||+++.+++.|
T Consensus 240 ~~~~~~~~l~~~~~~l~-~~v~~~G~-~~~~~l~~~~~~aDv~v~---pS~~~E~f~~~~lEAma~G~PVI~s~~gg~~E 314 (380)
T PRK15484 240 EKAAYQKKVLEAAKRIG-DRCIMLGG-QPPEKMHNYYPLADLVVV---PSQVEEAFCMVAVEAMAAGKPVLASTKGGITE 314 (380)
T ss_pred chhHHHHHHHHHHHhcC-CcEEEeCC-CCHHHHHHHHHhCCEEEe---CCCCccccccHHHHHHHcCCCEEEeCCCCcHh
Confidence 2 3444455555 58999998 999999999999999999 564 6999999999999999999999999999
Q ss_pred ccccCCcEEE-eC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHH
Q 011969 403 LVKVDKNGLL-FS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEH 460 (474)
Q Consensus 403 ~v~~~~~G~l-~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~ 460 (474)
++.++.+|++ ++ |+++++++|..++++ ++ +.++++++++.. +.++|+..-+++
T Consensus 315 iv~~~~~G~~l~~~~d~~~la~~I~~ll~d----~~-~~~~~~~ar~~~~~~fsw~~~a~~~ 371 (380)
T PRK15484 315 FVLEGITGYHLAEPMTSDSIISDINRTLAD----PE-LTQIAEQAKDFVFSKYSWEGVTQRF 371 (380)
T ss_pred hcccCCceEEEeCCCCHHHHHHHHHHHHcC----HH-HHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999984 43 799999999999985 65 467899988754 578777655543
No 33
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=1.4e-30 Score=286.84 Aligned_cols=370 Identities=18% Similarity=0.154 Sum_probs=241.7
Q ss_pred ceEEEEEeCCCCCCchHHH-HHHHHHhhCCC------------eEEEEec-----CCCCCCcceeccCCeEEEEeecCCC
Q 011969 5 GRACVVVLGDLGRSPRMQY-QALSLARQMSL------------EVDVVAY-----GGSKPHAAILEHPSIHIHTMTQWPT 66 (474)
Q Consensus 5 ~~~~i~~~~~~g~~~r~~~-~a~~l~~~~g~------------eV~Vv~~-----~~~~~~~~~~~~~gi~i~~~~~~~~ 66 (474)
++++++.....||++|... .+..+.+. ++ ++.|++. .+.......+...|+.++.++...
T Consensus 283 rIl~vi~sl~~GGAEr~~~~La~~l~~~-~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~Gv~v~~l~~~~- 360 (694)
T PRK15179 283 PVLMINGSLGAGGAERQFVNTAVALQSA-IQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAGIPVSVYSDMQ- 360 (694)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhc-ccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCCCeEEEeccCC-
Confidence 3566777777899998664 45666664 43 3445542 111222234446799999997221
Q ss_pred CCCCCCc---hhHHHHHHH----HHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEE-EecCch
Q 011969 67 IPRGLPK---VLKPVLLLL----KPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIV-DWHNFG 138 (474)
Q Consensus 67 ~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~h~~~ 138 (474)
..+... ....+..++ ........-+..++ +..+||+||+|++ ...+++.+++++.++|+|+ +.|++.
T Consensus 361 -~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~l-k~~kpDIVH~h~~---~a~~lg~lAa~~~gvPvIv~t~h~~~ 435 (694)
T PRK15179 361 -AWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVM-RSSVPSVVHIWQD---GSIFACALAALLAGVPRIVLSVRTMP 435 (694)
T ss_pred -ccCcccccccchhhHHHhhhcchhHHHHHHHHHHHH-HHcCCcEEEEeCC---cHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 111110 000111000 00001011111222 2378999999984 3344566777778889876 567652
Q ss_pred hhhhhhccCCCchHHHHHHHHHHHHh-hhcCEEEEeCHHHHHHHHHHhCCc---eEEEeCCCC-CCCCCCChHHHHHHHH
Q 011969 139 YTLLSLSLGRRSHFVSIYRWIEKYYG-KMANGCLCVTQAMQHELAQNWGIK---ATVLYDQPP-EFFHPTSLEEKHELFC 213 (474)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~e~~~~-~~ad~vi~vS~~~~~~l~~~~~~~---~~vi~n~~~-~~f~~~~~~~~~~~~~ 213 (474)
.. .....+...+..+.+.+. ..++.+++.|+..++.+.+.++.+ +.+||||.+ +.|.+.+... ..+.
T Consensus 436 ~~------~~~~~~~~~~~~l~~~l~~~~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~--~~~~ 507 (694)
T PRK15179 436 PV------DRPDRYRVEYDIIYSELLKMRGVALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACT--AMMA 507 (694)
T ss_pred cc------cchhHHHHHHHHHHHHHHhcCCeEEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhh--HHHH
Confidence 11 011112222222222222 234566777788887777766653 899999954 5565432111 1111
Q ss_pred hhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhc
Q 011969 214 RLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILN 293 (474)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~ 293 (474)
.+.. .. ++...+|+++|++.+.||++.+++|+..+.++
T Consensus 508 ~~~~-----------------------------------~~-~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~------ 545 (694)
T PRK15179 508 QFDA-----------------------------------RT-SDARFTVGTVMRVDDNKRPFLWVEAAQRFAAS------ 545 (694)
T ss_pred hhcc-----------------------------------cc-CCCCeEEEEEEeCCccCCHHHHHHHHHHHHHH------
Confidence 1110 01 22234889999999999999999999988763
Q ss_pred cCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccC
Q 011969 294 EDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTS 372 (474)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~ 372 (474)
.|+++|+|+|+|+..+++++.++++++ ++|.|+|. .+++..+|+.||++|+ +
T Consensus 546 ---------------------~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~---~~dv~~ll~aaDv~Vl---p 598 (694)
T PRK15179 546 ---------------------HPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGL---SRRVGYWLTQFNAFLL---L 598 (694)
T ss_pred ---------------------CcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCC---cchHHHHHHhcCEEEe---c
Confidence 689999999999999999999999999 79999998 5689999999999999 6
Q ss_pred CCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEeC--C--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 373 SSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS--S--SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 373 s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~--~--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
|..|+||++++|||+||+|||+|+.+++.|+|.++.+|++++ | +++++++|..+++....++ .+++++++.+
T Consensus 599 S~~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~----~l~~~ar~~a 674 (694)
T PRK15179 599 SRFEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADP----GIARKAADWA 674 (694)
T ss_pred cccccchHHHHHHHHcCCeEEEECCCChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccH----HHHHHHHHHH
Confidence 888999999999999999999999999999999999999996 4 4689999999887533334 4455555544
Q ss_pred -cccchHHHHHHHHH
Q 011969 449 -LSARWATEWEEHAK 462 (474)
Q Consensus 449 -~~~~w~~~~~~~~~ 462 (474)
..++|+...+++.+
T Consensus 675 ~~~FS~~~~~~~~~~ 689 (694)
T PRK15179 675 SARFSLNQMIASTVR 689 (694)
T ss_pred HHhCCHHHHHHHHHH
Confidence 37888887766543
No 34
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=2.3e-30 Score=256.06 Aligned_cols=347 Identities=22% Similarity=0.290 Sum_probs=246.9
Q ss_pred CCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 011969 16 GRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFL 95 (474)
Q Consensus 16 g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (474)
|+..++...+..|.+. ||+|++++............. ........ . ........... .... .+..
T Consensus 15 G~~~~~~~l~~~L~~~-g~~v~i~~~~~~~~~~~~~~~-~~~~~~~~--~--~~~~~~~~~~~----~~~~----~~~~- 79 (374)
T cd03801 15 GAERHVLELARALAAR-GHEVTVLTPGDGGLPDEEEVG-GIVVVRPP--P--LLRVRRLLLLL----LLAL----RLRR- 79 (374)
T ss_pred cHhHHHHHHHHHHHhc-CceEEEEecCCCCCCceeeec-CcceecCC--c--ccccchhHHHH----HHHH----HHHH-
Confidence 3455677778888886 999999997754432221111 11111000 0 00000000000 0000 1111
Q ss_pred hhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCH
Q 011969 96 CVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQ 175 (474)
Q Consensus 96 ~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~ 175 (474)
..+..+||+||++++...... ...++..+.|+++++|+..+..... ............++...+.+|.++++|+
T Consensus 80 ~~~~~~~Dii~~~~~~~~~~~---~~~~~~~~~~~i~~~h~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~i~~s~ 153 (374)
T cd03801 80 LLRRERFDVVHAHDWLALLAA---ALAARLLGIPLVLTVHGLEFGRPGN---ELGLLLKLARALERRALRRADRIIAVSE 153 (374)
T ss_pred HhhhcCCcEEEEechhHHHHH---HHHHHhcCCcEEEEeccchhhcccc---chhHHHHHHHHHHHHHHHhCCEEEEecH
Confidence 122368999999996443332 2556678899999999985322110 1122235556778888899999999999
Q ss_pred HHHHHHHHHhCC---ceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccc
Q 011969 176 AMQHELAQNWGI---KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGID 251 (474)
Q Consensus 176 ~~~~~l~~~~~~---~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (474)
.+++.+.+.++. ++.+++++.+ ..+.+.. ...+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~------------------------------------ 193 (374)
T cd03801 154 ATREELRELGGVPPEKITVIPNGVDTERFRPAP----RAARRRL------------------------------------ 193 (374)
T ss_pred HHHHHHHhcCCCCCCcEEEecCcccccccCccc----hHHHhhc------------------------------------
Confidence 999999988765 5899999843 3443322 1111111
Q ss_pred cccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHH
Q 011969 252 VFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKES 331 (474)
Q Consensus 252 ~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~ 331 (474)
...+....++|+|++.+.||++.+++++..+.++ .++++|+++|.++..+.
T Consensus 194 --~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~---------------------------~~~~~l~i~G~~~~~~~ 244 (374)
T cd03801 194 --GIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKE---------------------------YPDVRLVIVGDGPLREE 244 (374)
T ss_pred --CCcCCCeEEEEecchhhhcCHHHHHHHHHHHhhh---------------------------cCCeEEEEEeCcHHHHH
Confidence 1123344899999999999999999999998773 57899999999988888
Q ss_pred HHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcE
Q 011969 332 YEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNG 410 (474)
Q Consensus 332 ~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G 410 (474)
+++.+++++. ++|.+.|. ++.+++..+|+.||++++ ++..+++|++++|||+||+|||+++.++..+++.++.+|
T Consensus 245 ~~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~~di~i~---~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~~~~g 320 (374)
T cd03801 245 LEALAAELGLGDRVTFLGF-VPDEDLPALYAAADVFVL---PSLYEGFGLVLLEAMAAGLPVVASDVGGIPEVVEDGETG 320 (374)
T ss_pred HHHHHHHhCCCcceEEEec-cChhhHHHHHHhcCEEEe---cchhccccchHHHHHHcCCcEEEeCCCChhHHhcCCcce
Confidence 8888888888 79999998 999999999999999999 565589999999999999999999999999999989999
Q ss_pred EEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hccccchHHHHHHH
Q 011969 411 LLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLE-MGLSARWATEWEEH 460 (474)
Q Consensus 411 ~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~~ 460 (474)
++++ |+++++++|.+++++ ++.++++++++++ ..+.++|+...++.
T Consensus 321 ~~~~~~~~~~l~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (374)
T cd03801 321 LLVPPGDPEALAEAILRLLDD----PELRRRLGEAARERVAERFSWDRVAART 369 (374)
T ss_pred EEeCCCCHHHHHHHHHHHHcC----hHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9996 489999999999885 7888999999884 34577777655443
No 35
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=5.9e-30 Score=252.72 Aligned_cols=327 Identities=20% Similarity=0.240 Sum_probs=233.2
Q ss_pred CCCCchHHH-HHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 011969 15 LGRSPRMQY-QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLW 93 (474)
Q Consensus 15 ~g~~~r~~~-~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (474)
.||..|+.. .+..|.++ ||+|++++..... ........++.+..++.... ............+.+.
T Consensus 12 ~gG~~~~~~~l~~~L~~~-g~~v~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------- 78 (348)
T cd03820 12 AGGAERVLSNLANALAEK-GHEVTIISLDKGE-PPFYELDPKIKVIDLGDKRD--SKLLARFKKLRRLRKL--------- 78 (348)
T ss_pred CCChHHHHHHHHHHHHhC-CCeEEEEecCCCC-CCccccCCccceeecccccc--cchhccccchHHHHHh---------
Confidence 577777554 56677775 9999999977654 11223345677776662111 1001111111111111
Q ss_pred HHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCC-CcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEE
Q 011969 94 FLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRR-SAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLC 172 (474)
Q Consensus 94 ~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~ 172 (474)
+ +..+||+|+++.+. .. ........+ .|++++.|+... ...... .....++.+.+.+|.+++
T Consensus 79 --l-~~~~~d~i~~~~~~-~~----~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~d~ii~ 141 (348)
T cd03820 79 --L-KNNKPDVVISFLTS-LL----TFLASLGLKIVKLIVSEHNSPD-------AYKKRL--RRLLLRRLLYRRADAVVV 141 (348)
T ss_pred --h-cccCCCEEEEcCch-HH----HHHHHHhhccccEEEecCCCcc-------chhhhh--HHHHHHHHHHhcCCEEEE
Confidence 1 23799999999965 11 122222333 489999998731 111111 111257888899999999
Q ss_pred eCHHHHHHHHHHhCCceEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccccccc
Q 011969 173 VTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDV 252 (474)
Q Consensus 173 vS~~~~~~l~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (474)
+|+.++.......+.++.+++|+.+.......
T Consensus 142 ~s~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~------------------------------------------------ 173 (348)
T cd03820 142 LTEEDRALYYKKFNKNVVVIPNPLPFPPEEPS------------------------------------------------ 173 (348)
T ss_pred eCHHHHHHhhccCCCCeEEecCCcChhhcccc------------------------------------------------
Confidence 99999733333335568999998542111100
Q ss_pred ccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHH
Q 011969 253 FLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 332 (474)
Q Consensus 253 ~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~ 332 (474)
.......++++|++.+.||++.++++++.+.++ .|+++|+|+|+|++.+.+
T Consensus 174 --~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~---------------------------~~~~~l~i~G~~~~~~~~ 224 (348)
T cd03820 174 --SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKK---------------------------HPDWKLRIVGDGPEREAL 224 (348)
T ss_pred --CCCCCcEEEEEEeeccccCHHHHHHHHHHHHhc---------------------------CCCeEEEEEeCCCCHHHH
Confidence 012233899999999999999999999998763 689999999999999989
Q ss_pred HHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc-cccccccccCCcE
Q 011969 333 EEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY-SCIEELVKVDKNG 410 (474)
Q Consensus 333 ~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~-~~~~e~v~~~~~G 410 (474)
++.++++++ ++|.|.|. .+++..+|+.||++++ ++..|++|++++|||+||+|||+++. ++..+++.++.+|
T Consensus 225 ~~~~~~~~~~~~v~~~g~---~~~~~~~~~~ad~~i~---ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~~~~~~g 298 (348)
T cd03820 225 EALIKELGLEDRVILLGF---TKNIEEYYAKASIFVL---TSRFEGFPMVLLEAMAFGLPVISFDCPTGPSEIIEDGVNG 298 (348)
T ss_pred HHHHHHcCCCCeEEEcCC---cchHHHHHHhCCEEEe---CccccccCHHHHHHHHcCCCEEEecCCCchHhhhccCcce
Confidence 988999988 68999987 7999999999999999 67779999999999999999999986 4566777777799
Q ss_pred EEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHH
Q 011969 411 LLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWE 458 (474)
Q Consensus 411 ~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 458 (474)
++++ |+++++++|.+++++ ++.+++|++++.+..++++|+...+
T Consensus 299 ~~~~~~~~~~~~~~i~~ll~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (348)
T cd03820 299 LLVPNGDVEALAEALLRLMED----EELRKRMGANARESAERFSIENIIK 344 (348)
T ss_pred EEeCCCCHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 9996 689999999999984 8999999999988777888776443
No 36
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=100.00 E-value=7.2e-30 Score=256.62 Aligned_cols=273 Identities=19% Similarity=0.222 Sum_probs=202.4
Q ss_pred CCCCEEEEeCCCChhHHHHHHH---HHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeC-H
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKW---ASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVT-Q 175 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS-~ 175 (474)
.+||+||++....+........ ..+..+.|+|++.|+.. ..... ....++++.+.+.+|.++|+| +
T Consensus 75 ~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~-------~~~~~---~~~~~~~~~~~~~~d~ii~~s~~ 144 (366)
T cd03822 75 SGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVL-------LHEPR---PGDRALLRLLLRRADAVIVMSSE 144 (366)
T ss_pred cCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCC-------ccccc---hhhhHHHHHHHhcCCEEEEeeHH
Confidence 7899999987322211111112 22347899999999971 11111 123466677788999999996 4
Q ss_pred HHHHHHHHHhCCceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccccccccc
Q 011969 176 AMQHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFL 254 (474)
Q Consensus 176 ~~~~~l~~~~~~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (474)
..++.+...+..++.+++|+.+ ..+.+... . +...
T Consensus 145 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~----~~~~-------------------------------------- 180 (366)
T cd03822 145 LLRALLLRAYPEKIAVIPHGVPDPPAEPPES--L----KALG-------------------------------------- 180 (366)
T ss_pred HHHHHHhhcCCCcEEEeCCCCcCcccCCchh--h----Hhhc--------------------------------------
Confidence 4444444322356899999854 33322211 0 1111
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHH
Q 011969 255 KPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEE 334 (474)
Q Consensus 255 ~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~ 334 (474)
.......++|+|++.+.||++.+++|+..+.++ .++++|+|+|++........
T Consensus 181 ~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~---------------------------~~~~~l~i~G~~~~~~~~~~ 233 (366)
T cd03822 181 GLDGRPVLLTFGLLRPYKGLELLLEALPLLVAK---------------------------HPDVRLLVAGETHPDLERYR 233 (366)
T ss_pred CCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhh---------------------------CCCeEEEEeccCccchhhhh
Confidence 122334899999999999999999999998773 68999999998865433222
Q ss_pred -----HHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCC--CCchHHHHHHhcCCcEEEeccccccccccc
Q 011969 335 -----KIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGL--DLPMKVVDMFGCGLPVCAVSYSCIEELVKV 406 (474)
Q Consensus 335 -----~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e--~~p~kv~Eama~G~PVia~~~~~~~e~v~~ 406 (474)
.++++++ ++|.|.|.|++.+++..+|+.||++++ |+..| ++|++++|||+||+|||+++.++ .+.+.+
T Consensus 234 ~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~---ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i~~ 309 (366)
T cd03822 234 GEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVL---PYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEEVLD 309 (366)
T ss_pred hhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEe---cccccccccchHHHHHHHcCCCEEecCCCC-hheeee
Confidence 3788888 799999988999999999999999999 67777 99999999999999999999998 677778
Q ss_pred CCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHH
Q 011969 407 DKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHA 461 (474)
Q Consensus 407 ~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 461 (474)
+.+|++++ |+++++++|..++++ ++.++++++++++...+++|+...++..
T Consensus 310 ~~~g~~~~~~d~~~~~~~l~~l~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 362 (366)
T cd03822 310 GGTGLLVPPGDPAALAEAIRRLLAD----PELAQALRARAREYARAMSWERVAERYL 362 (366)
T ss_pred CCCcEEEcCCCHHHHHHHHHHHHcC----hHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 88999985 699999999999984 7889999999999887788877665543
No 37
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=6.9e-30 Score=255.32 Aligned_cols=280 Identities=18% Similarity=0.217 Sum_probs=210.8
Q ss_pred cCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHH--HHHHHHHHHhhhcCEEEEeCHH
Q 011969 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVS--IYRWIEKYYGKMANGCLCVTQA 176 (474)
Q Consensus 99 ~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~--~~~~~e~~~~~~ad~vi~vS~~ 176 (474)
..++|+||++++....... +....+..+.|++++.|+...... .....+.+ .....++...+.++.+++.|..
T Consensus 85 ~~~~dii~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~ 159 (375)
T cd03821 85 IREADIVHVHGLWSYPSLA-AARAARKYGIPYVVSPHGMLDPWA----LPHKALKKRLAWFLFERRLLQAAAAVHATSEQ 159 (375)
T ss_pred CCCCCEEEEecccchHHHH-HHHHHHHhCCCEEEEccccccccc----cccchhhhHHHHHHHHHHHHhcCCEEEECCHH
Confidence 3789999999865554443 333444578999999998732111 01222221 1234567777889999999987
Q ss_pred HHHHHHHHh-CCceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccccccccc
Q 011969 177 MQHELAQNW-GIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFL 254 (474)
Q Consensus 177 ~~~~l~~~~-~~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (474)
....+.... ..++.+++|+.+ +.|.+...... +..++ .
T Consensus 160 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~---~~~~~-------------------------------------~ 199 (375)
T cd03821 160 EAAEIRRLGLKAPIAVIPNGVDIPPFAALPSRGR---RRKFP-------------------------------------I 199 (375)
T ss_pred HHHHHHhhCCcccEEEcCCCcChhccCcchhhhh---hhhcc-------------------------------------C
Confidence 776665533 345899999854 44544321111 22222 1
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh--HHH
Q 011969 255 KPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK--ESY 332 (474)
Q Consensus 255 ~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~--~~~ 332 (474)
+++...++|+|++.+.||++.+++|+..+.++ .++++|+|+|.++.. ..+
T Consensus 200 -~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~---------------------------~~~~~l~i~G~~~~~~~~~~ 251 (375)
T cd03821 200 -LPDKRIILFLGRLHPKKGLDLLIEAFAKLAER---------------------------FPDWHLVIAGPDEGGYRAEL 251 (375)
T ss_pred -CCCCcEEEEEeCcchhcCHHHHHHHHHHhhhh---------------------------cCCeEEEEECCCCcchHHHH
Confidence 23334899999999999999999999998773 689999999987543 445
Q ss_pred HHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEE
Q 011969 333 EEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGL 411 (474)
Q Consensus 333 ~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~ 411 (474)
+..++++++ ++|.|.|. ++.+++..+|+.||++++ +|..|++|++++|||+||+|||+++.++..+++.+ .+|+
T Consensus 252 ~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~adv~v~---ps~~e~~~~~~~Eama~G~PvI~~~~~~~~~~~~~-~~~~ 326 (375)
T cd03821 252 KQIAAALGLEDRVTFTGM-LYGEDKAAALADADLFVL---PSHSENFGIVVAEALACGTPVVTTDKVPWQELIEY-GCGW 326 (375)
T ss_pred HHHHHhcCccceEEEcCC-CChHHHHHHHhhCCEEEe---ccccCCCCcHHHHHHhcCCCEEEcCCCCHHHHhhc-CceE
Confidence 555578888 79999998 999999999999999999 67779999999999999999999999999999988 8999
Q ss_pred EeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-ccccchHHHHHHH
Q 011969 412 LFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM-GLSARWATEWEEH 460 (474)
Q Consensus 412 l~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~~ 460 (474)
+++ +.++++++|..++++ ++.++++++++++. .+.++|+..-+++
T Consensus 327 ~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 373 (375)
T cd03821 327 VVDDDVDALAAALRRALEL----PQRLKAMGENGRALVEERFSWTAIAQQL 373 (375)
T ss_pred EeCCChHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhcCHHHHHHHh
Confidence 987 579999999999995 78899999999987 5778887665543
No 38
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.7e-29 Score=280.34 Aligned_cols=296 Identities=15% Similarity=0.163 Sum_probs=213.9
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHh------hCCCcEEEEecCchhhhhh----h-ccCC-CchH---HHH----HH--H
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASS------LRRSAFIVDWHNFGYTLLS----L-SLGR-RSHF---VSI----YR--W 158 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~h~~~~~~~~----~-~~~~-~~~~---~~~----~~--~ 158 (474)
.+|||||+|+.. +.+++-++.. +.++|+|+++||+.|.-.. . ..+- ...+ ..+ +. .
T Consensus 609 ~~PDIIH~HDW~---TaLV~pll~~~y~~~~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN 685 (977)
T PLN02939 609 KKPDIIHCHDWQ---TAFVAPLYWDLYAPKGFNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRIN 685 (977)
T ss_pred CCCCEEEECCcc---HHHHHHHHHHHHhhccCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchH
Confidence 689999999954 3332111111 3568999999998642210 0 0000 0000 000 00 1
Q ss_pred HHHHHhhhcCEEEEeCHHHHHHHHHHhC-----------CceEEEeCCC-CCCCCCCChH----------------HHHH
Q 011969 159 IEKYYGKMANGCLCVTQAMQHELAQNWG-----------IKATVLYDQP-PEFFHPTSLE----------------EKHE 210 (474)
Q Consensus 159 ~e~~~~~~ad~vi~vS~~~~~~l~~~~~-----------~~~~vi~n~~-~~~f~~~~~~----------------~~~~ 210 (474)
+-+....+||.|++||+..++++...+| .++.+|+||. .+.|.|.... .+..
T Consensus 686 ~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~GK~~nK~a 765 (977)
T PLN02939 686 VVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQGKAANKAA 765 (977)
T ss_pred HHHHHHHhCCeeEeeeHHHHHHHHHHhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhhhhhhhHH
Confidence 1122334799999999999999876332 2378999994 4677775321 2445
Q ss_pred HHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhh
Q 011969 211 LFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAA 290 (474)
Q Consensus 211 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~ 290 (474)
+++++|+ +++ .++.| +++++||+.+.||++.+++|+..+.+
T Consensus 766 LRkelGL------~~~----------------------------d~d~p-LIg~VGRL~~QKGiDlLleA~~~Ll~---- 806 (977)
T PLN02939 766 LRKQLGL------SSA----------------------------DASQP-LVGCITRLVPQKGVHLIRHAIYKTAE---- 806 (977)
T ss_pred HHHHhCC------Ccc----------------------------cccce-EEEEeecCCcccChHHHHHHHHHHhh----
Confidence 5666661 000 02344 89999999999999999999987754
Q ss_pred hhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh---HHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEE
Q 011969 291 ILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK---ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLG 366 (474)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~---~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~ 366 (474)
++++|+|+|+|++. +.+++.+++++. ++|.|+|. .+.+....+|+.||++
T Consensus 807 -------------------------~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~-~de~lah~IYAaADIF 860 (977)
T PLN02939 807 -------------------------LGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILK-YDEALSHSIYAASDMF 860 (977)
T ss_pred -------------------------cCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEec-cCHHHHHHHHHhCCEE
Confidence 46899999999763 567888888887 68999998 7777778999999999
Q ss_pred EeeccCCCCCCCchHHHHHHhcCCcEEEeccccccccccc---------CCcEEEeC--CHHHHHHHHHHHHhCCCCCHH
Q 011969 367 VCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKV---------DKNGLLFS--SSSELADQLLMLFKGFPDDSD 435 (474)
Q Consensus 367 v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~---------~~~G~l~~--~~~~la~~i~~l~~~~~~~~~ 435 (474)
|+ ||..|+||++++|||+||+|+|+++.||+.|+|.+ +.+|++++ |+++++++|.++++.+..+++
T Consensus 861 Lm---PSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rAL~~~~~dpe 937 (977)
T PLN02939 861 II---PSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERAFNYYKRKPE 937 (977)
T ss_pred EE---CCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCHHHHHHHHHHHHHHhccCHH
Confidence 99 78899999999999999999999999999999865 47999996 799999999998875545789
Q ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHHHHh
Q 011969 436 VLKKLRNGTLEMGLSARWATEWEEHAKPLITEVI 469 (474)
Q Consensus 436 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 469 (474)
.+++|++++.+ ..++|+...+++. .+++++.
T Consensus 938 ~~~~L~~~am~--~dFSWe~~A~qYe-eLY~~ll 968 (977)
T PLN02939 938 VWKQLVQKDMN--IDFSWDSSASQYE-ELYQRAV 968 (977)
T ss_pred HHHHHHHHHHH--hcCCHHHHHHHHH-HHHHHHH
Confidence 99999988754 4789988776643 4555543
No 39
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=1.4e-29 Score=279.59 Aligned_cols=363 Identities=15% Similarity=0.106 Sum_probs=238.1
Q ss_pred HHhhCCC----eEEEEecCCCCC--------CcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHH-HHHH
Q 011969 28 LARQMSL----EVDVVAYGGSKP--------HAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFM-LLWF 94 (474)
Q Consensus 28 l~~~~g~----eV~Vv~~~~~~~--------~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (474)
|+++ || +|+|+|-..... ...+...+|+++.++|..+..+.-++++..... ++..+..+.. +.-.
T Consensus 300 La~~-G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~~~~~~~I~rvp~g~~~~~~~~~~i~k~~-l~p~l~~f~~~~~~~ 377 (784)
T TIGR02470 300 IKLQ-GLEITPKILIVTRLIPDAEGTTCNQRLEKVYGTEHAWILRVPFRTENGIILRNWISRFE-IWPYLETFAEDAEKE 377 (784)
T ss_pred HHhc-CCCccceEEEEecCCCCccccccccccccccCCCceEEEEecCCCCcccccccccCHHH-HHHHHHHHHHHHHHH
Confidence 4564 99 778999543211 112333569999999832211111122111111 1111111111 1111
Q ss_pred Hhhh-cCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchH---HHHHH--HHHHHHhhhcC
Q 011969 95 LCVK-IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHF---VSIYR--WIEKYYGKMAN 168 (474)
Q Consensus 95 ~~~~-~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~---~~~~~--~~e~~~~~~ad 168 (474)
+... ..+||+||+|. ..+.+++..+++..++|++.+.|.++.......-...... ..+.. ..|..+...||
T Consensus 378 ~~~~~~~~pDlIHahy---~d~glva~lla~~lgVP~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD 454 (784)
T TIGR02470 378 ILAELQGKPDLIIGNY---SDGNLVASLLARKLGVTQCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAAD 454 (784)
T ss_pred HHHhcCCCCCEEEECC---CchHHHHHHHHHhcCCCEEEECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCC
Confidence 1111 25799999998 5566678888999999999999988532211000001101 01111 22667788999
Q ss_pred EEEEeCHHHHHH----HHHH-----------h----C-----CceEEEeCCC-CCCCCCCChHHHH--HH----------
Q 011969 169 GCLCVTQAMQHE----LAQN-----------W----G-----IKATVLYDQP-PEFFHPTSLEEKH--EL---------- 211 (474)
Q Consensus 169 ~vi~vS~~~~~~----l~~~-----------~----~-----~~~~vi~n~~-~~~f~~~~~~~~~--~~---------- 211 (474)
.||+.|...... +.+. + | .++.++++|. .+.|.|.+...+. .+
T Consensus 455 ~IItsT~qEi~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~ 534 (784)
T TIGR02470 455 FIITSTYQEIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFS 534 (784)
T ss_pred EEEECcHHHhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccc
Confidence 999999755331 1110 1 1 2367888884 4667666432211 01
Q ss_pred ----HHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHH
Q 011969 212 ----FCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRR 287 (474)
Q Consensus 212 ----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~ 287 (474)
.+.+| +...+++| +|+++||+.+.||++.|++|+..+...
T Consensus 535 ~~~~~~~~G-----------------------------------~l~d~~kp-iIl~VGRL~~~KGid~LIeA~~~l~~l 578 (784)
T TIGR02470 535 LEDNDEHYG-----------------------------------YLKDPNKP-IIFSMARLDRVKNLTGLVECYGRSPKL 578 (784)
T ss_pred hhhHHHHhC-----------------------------------CCCCCCCc-EEEEEeCCCccCCHHHHHHHHHHhHhh
Confidence 11122 01134556 889999999999999999999887542
Q ss_pred HhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC------------hHHHHHHHHHcCC-CcEEEecCCCCcc
Q 011969 288 VAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD------------KESYEEKIRRLRL-KRVAFRTMWLSAE 354 (474)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~------------~~~~~~~~~~l~l-~~V~f~g~~v~~~ 354 (474)
.++++|+|+|++++ .+++.+.++++++ ++|.|+|...+..
T Consensus 579 ---------------------------~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~flG~~~~~~ 631 (784)
T TIGR02470 579 ---------------------------RELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIRWIGAQLNRV 631 (784)
T ss_pred ---------------------------CCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEEEccCcCCcc
Confidence 45789999998753 1356677889998 7999999734667
Q ss_pred cHHHHHh----cccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEeC--CHHHHHHHHHHHHh
Q 011969 355 DYPLLLG----SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFK 428 (474)
Q Consensus 355 ~~~~~l~----~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~ 428 (474)
+...+|+ .+|++|+ ||..|+||++++||||||+|||+|+.||+.|+|.++.+|++++ |+++++++|.++++
T Consensus 632 ~~~elyr~iAd~adVfV~---PS~~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~ 708 (784)
T TIGR02470 632 RNGELYRYIADTKGIFVQ---PALYEAFGLTVLEAMTCGLPTFATRFGGPLEIIQDGVSGFHIDPYHGEEAAEKIVDFFE 708 (784)
T ss_pred cHHHHHHHhhccCcEEEE---CCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 7767665 3479999 7899999999999999999999999999999999999999997 69999999999875
Q ss_pred CCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHH
Q 011969 429 GFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHA 461 (474)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~ 461 (474)
....|++.+++|++++++.+ +.|+|+...++++
T Consensus 709 kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll 742 (784)
T TIGR02470 709 KCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLL 742 (784)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 32236899999999998864 6798887766643
No 40
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=1.2e-29 Score=269.66 Aligned_cols=288 Identities=17% Similarity=0.110 Sum_probs=209.2
Q ss_pred cCCCCEEEEeCCCChhHHHHHHHHHhh------CCCcEEEEecCchhhhh------hhccCCC-chHH------HHHHHH
Q 011969 99 IASPDVFLVQNPPSVPTLVAVKWASSL------RRSAFIVDWHNFGYTLL------SLSLGRR-SHFV------SIYRWI 159 (474)
Q Consensus 99 ~~~~Dvi~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~h~~~~~~~------~~~~~~~-~~~~------~~~~~~ 159 (474)
..+||+||+|+. .+.+++.+++.. .++|+|+++|++.+... ....... ..+. .....+
T Consensus 127 ~~~pDviH~hd~---~t~~~~~~l~~~~~~~~~~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (476)
T cd03791 127 GWKPDIIHCHDW---HTGLVPALLKEKYADPFFKNIKTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNF 203 (476)
T ss_pred CCCCcEEEECch---HHHHHHHHHHHhhccccCCCCCEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccH
Confidence 378999999994 344444444443 48999999999853110 0000000 0000 001256
Q ss_pred HHHHhhhcCEEEEeCHHHHHHHHHH------------hCCceEEEeCCC-CCCCCCCChH----------------HHHH
Q 011969 160 EKYYGKMANGCLCVTQAMQHELAQN------------WGIKATVLYDQP-PEFFHPTSLE----------------EKHE 210 (474)
Q Consensus 160 e~~~~~~ad~vi~vS~~~~~~l~~~------------~~~~~~vi~n~~-~~~f~~~~~~----------------~~~~ 210 (474)
++..++.||.++++|+..++++.+. ...++.+|+||. .+.|.|.... .+..
T Consensus 204 ~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~~~~~k~~ 283 (476)
T cd03791 204 LKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLEGKAENKAA 283 (476)
T ss_pred HHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccccHHHHHHH
Confidence 7788899999999999999887531 134589999995 4666664321 1233
Q ss_pred HHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhh
Q 011969 211 LFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAA 290 (474)
Q Consensus 211 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~ 290 (474)
+++++|. ...++.+ +++|+|++.+.||++.+++++..+.+
T Consensus 284 l~~~~g~-----------------------------------~~~~~~~-~i~~vGrl~~~Kg~~~li~a~~~l~~---- 323 (476)
T cd03791 284 LQEELGL-----------------------------------PVDPDAP-LFGFVGRLTEQKGIDLLLEALPELLE---- 323 (476)
T ss_pred HHHHcCC-----------------------------------CcCCCCC-EEEEEeeccccccHHHHHHHHHHHHH----
Confidence 4445441 0123444 89999999999999999999999876
Q ss_pred hhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh--HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEe
Q 011969 291 ILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK--ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVC 368 (474)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~--~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~ 368 (474)
.+++|+|+|+|+.. +.+++.++++ .+++.|.+. .+.+++..+|+.||++++
T Consensus 324 -------------------------~~~~lvi~G~g~~~~~~~~~~~~~~~-~~~v~~~~~-~~~~~~~~~~~~aDv~l~ 376 (476)
T cd03791 324 -------------------------LGGQLVILGSGDPEYEEALRELAARY-PGRVAVLIG-YDEALAHLIYAGADFFLM 376 (476)
T ss_pred -------------------------cCcEEEEEecCCHHHHHHHHHHHHhC-CCcEEEEEe-CCHHHHHHHHHhCCEEEC
Confidence 24899999998642 4556666655 468888777 667788899999999999
Q ss_pred eccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCC------cEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHH
Q 011969 369 LHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDK------NGLLFS--SSSELADQLLMLFKGFPDDSDVLKKL 440 (474)
Q Consensus 369 ~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~------~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~ 440 (474)
||..|++|++++|||+||+|||+++.+++.|+|.++. +|++++ |+++++++|.++++.+. +++.++++
T Consensus 377 ---pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l~~~~-~~~~~~~~ 452 (476)
T cd03791 377 ---PSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGYNADALLAALRRALALYR-DPEAWRKL 452 (476)
T ss_pred ---CCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHHHHHc-CHHHHHHH
Confidence 6888999999999999999999999999999999887 999996 69999999999887432 47888888
Q ss_pred HHHHHHhccccchHHHHHHHHH
Q 011969 441 RNGTLEMGLSARWATEWEEHAK 462 (474)
Q Consensus 441 ~~~~~~~~~~~~w~~~~~~~~~ 462 (474)
++++.+ ..++|+...+++.+
T Consensus 453 ~~~~~~--~~fsw~~~a~~~~~ 472 (476)
T cd03791 453 QRNAMA--QDFSWDRSAKEYLE 472 (476)
T ss_pred HHHHhc--cCCChHHHHHHHHH
Confidence 888865 35777776655543
No 41
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=3.4e-29 Score=267.95 Aligned_cols=290 Identities=16% Similarity=0.155 Sum_probs=209.2
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHh--hCCCcEEEEecCchhhhhh-----hccCC-CchHH----HHH--HHHHHHHhh
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASS--LRRSAFIVDWHNFGYTLLS-----LSLGR-RSHFV----SIY--RWIEKYYGK 165 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~h~~~~~~~~-----~~~~~-~~~~~----~~~--~~~e~~~~~ 165 (474)
.+|||||+|+ +.+.++..+++. ..++|+|+|+|+..+.... ...+. ...+. ..+ ..+.+...+
T Consensus 132 ~~pDIiH~Hd---w~~~l~~~~l~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~ 208 (485)
T PRK14099 132 FVPDIVHAHD---WQAGLAPAYLHYSGRPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQ 208 (485)
T ss_pred CCCCEEEECC---cHHHHHHHHHHhCCCCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHH
Confidence 6899999999 444444444443 2357999999998542100 00000 00000 000 023566778
Q ss_pred hcCEEEEeCHHHHHHHHHHh------------CCceEEEeCCCC-CCCCCCChH----------------HHHHHHHhhh
Q 011969 166 MANGCLCVTQAMQHELAQNW------------GIKATVLYDQPP-EFFHPTSLE----------------EKHELFCRLN 216 (474)
Q Consensus 166 ~ad~vi~vS~~~~~~l~~~~------------~~~~~vi~n~~~-~~f~~~~~~----------------~~~~~~~~l~ 216 (474)
.||.|+++|+..++++.+.+ ..++.+|+||.+ +.|.|.... .+..+++++|
T Consensus 209 ~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~g 288 (485)
T PRK14099 209 LADRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFG 288 (485)
T ss_pred hcCeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcC
Confidence 99999999999999987532 234899999954 667775421 1234555555
Q ss_pred hccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCC
Q 011969 217 KILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDD 296 (474)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~ 296 (474)
+ ...++.+ +++++||+.++||++.|++|+..+.+
T Consensus 289 l-----------------------------------~~~~~~~-li~~VgRL~~~KG~d~Li~A~~~l~~---------- 322 (485)
T PRK14099 289 L-----------------------------------DPDPDAL-LLGVISRLSWQKGLDLLLEALPTLLG---------- 322 (485)
T ss_pred C-----------------------------------CcccCCc-EEEEEecCCccccHHHHHHHHHHHHh----------
Confidence 1 0012233 88899999999999999999998765
Q ss_pred CchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHHHHHHHcCCCcEEEecCCCCcccHHHHH-hcccEEEeeccCC
Q 011969 297 STNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLL-GSADLGVCLHTSS 373 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l-~~adv~v~~~~~s 373 (474)
.+++|+|+|+|+. ++.+++.+++++.+.+.|+|. .+++..+| ..||++|+ ||
T Consensus 323 -------------------~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~---~~~l~~~~~a~aDifv~---PS 377 (485)
T PRK14099 323 -------------------EGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGY---DEALAHLIQAGADALLV---PS 377 (485)
T ss_pred -------------------cCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCC---CHHHHHHHHhcCCEEEE---CC
Confidence 3689999999864 566777777765333468887 78999887 47999999 68
Q ss_pred CCCCCchHHHHHHhcCCcEEEecccccccccccC---------CcEEEeC--CHHHHHHHHHH---HHhCCCCCHHHHHH
Q 011969 374 SGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVD---------KNGLLFS--SSSELADQLLM---LFKGFPDDSDVLKK 439 (474)
Q Consensus 374 ~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~---------~~G~l~~--~~~~la~~i~~---l~~~~~~~~~~~~~ 439 (474)
..|+||++.+|||+||+|+|+++.||+.|+|.++ .+|++++ |+++|+++|.+ +++ |++.+++
T Consensus 378 ~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~~----d~~~~~~ 453 (485)
T PRK14099 378 RFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPVTADALAAALRKTAALFA----DPVAWRR 453 (485)
T ss_pred ccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHhc----CHHHHHH
Confidence 8999999999999999988889999999998775 6899996 79999999997 454 5888999
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHhh
Q 011969 440 LRNGTLEMGLSARWATEWEEHAKPLITEVIS 470 (474)
Q Consensus 440 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 470 (474)
|++++++ +.++|+...+++ ..+++++..
T Consensus 454 l~~~~~~--~~fSw~~~a~~y-~~lY~~l~~ 481 (485)
T PRK14099 454 LQRNGMT--TDVSWRNPAQHY-AALYRSLVA 481 (485)
T ss_pred HHHHhhh--hcCChHHHHHHH-HHHHHHHHh
Confidence 9999874 479999887775 455565543
No 42
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=4.7e-30 Score=264.29 Aligned_cols=273 Identities=14% Similarity=0.163 Sum_probs=201.2
Q ss_pred cCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHH
Q 011969 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (474)
Q Consensus 99 ~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (474)
..+||+||+|++.. .. ...+++..+.|+|+++|.... ... ....+++ +.+.+.+|.+++.|..
T Consensus 83 ~~~~Dvv~~h~~~~--~~--~~~~~~~~~~~~i~~~H~~~~--------~~~--~~~~~~~-~~~~~~~d~~i~~~~~-- 145 (372)
T cd03792 83 DLDADVVVIHDPQP--LA--LPLFKKKRGRPWIWRCHIDLS--------SPN--RRVWDFL-QPYIEDYDAAVFHLPE-- 145 (372)
T ss_pred cCCCCEEEECCCCc--hh--HHHhhhcCCCeEEEEeeeecC--------CCc--HHHHHHH-HHHHHhCCEEeecHHH--
Confidence 36899999998752 22 222333447899999997621 111 1222233 4556779998888832
Q ss_pred HHHHHHhCCceEEEeCCCCCC--CC-CCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccC
Q 011969 179 HELAQNWGIKATVLYDQPPEF--FH-PTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLK 255 (474)
Q Consensus 179 ~~l~~~~~~~~~vi~n~~~~~--f~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (474)
++....+.+..+++|+.+.. +. +.+......++++++ +.
T Consensus 146 -~~~~~~~~~~~vipngvd~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~ 187 (372)
T cd03792 146 -YVPPQVPPRKVIIPPSIDPLSGKNRELSPADIEYILEKYG-------------------------------------ID 187 (372)
T ss_pred -hcCCCCCCceEEeCCCCCCCccccCCCCHHHHHHHHHHhC-------------------------------------CC
Confidence 23332233344999985421 21 222233445555555 23
Q ss_pred CCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh-----H
Q 011969 256 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-----E 330 (474)
Q Consensus 256 ~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~-----~ 330 (474)
++.+ +++++||+.+.||++.+++|++.+.++ .|+++|+|+|+|+.. +
T Consensus 188 ~~~~-~i~~vgrl~~~Kg~~~ll~a~~~l~~~---------------------------~~~~~l~i~G~g~~~~~~~~~ 239 (372)
T cd03792 188 PERP-YITQVSRFDPWKDPFGVIDAYRKVKER---------------------------VPDPQLVLVGSGATDDPEGWI 239 (372)
T ss_pred CCCc-EEEEEeccccccCcHHHHHHHHHHHhh---------------------------CCCCEEEEEeCCCCCCchhHH
Confidence 4444 899999999999999999999998763 578999999998652 2
Q ss_pred HHHHHHHHcCC-CcEEEecCC-CCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCC
Q 011969 331 SYEEKIRRLRL-KRVAFRTMW-LSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDK 408 (474)
Q Consensus 331 ~~~~~~~~l~l-~~V~f~g~~-v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~ 408 (474)
.+++..+..++ ++|.|.|.. ++.+++..+|+.||++++ +|..|+||++++||||||+|||+++.++..+++.++.
T Consensus 240 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~---~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~~i~~~~ 316 (372)
T cd03792 240 VYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQ---KSIREGFGLTVTEALWKGKPVIAGPVGGIPLQIEDGE 316 (372)
T ss_pred HHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEe---CCCccCCCHHHHHHHHcCCCEEEcCCCCchhhcccCC
Confidence 24455545666 689999872 288999999999999999 7889999999999999999999999999999999999
Q ss_pred cEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHH
Q 011969 409 NGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHA 461 (474)
Q Consensus 409 ~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~ 461 (474)
+|+++++.++++++|.+++++ ++.+++|++++++.. +.++|+...+++.
T Consensus 317 ~g~~~~~~~~~a~~i~~ll~~----~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 366 (372)
T cd03792 317 TGFLVDTVEEAAVRILYLLRD----PELRRKMGANAREHVRENFLITRHLKDYL 366 (372)
T ss_pred ceEEeCCcHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 999999999999999999984 888999999998865 5788887665544
No 43
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.98 E-value=2.6e-29 Score=265.14 Aligned_cols=354 Identities=13% Similarity=0.104 Sum_probs=225.7
Q ss_pred CCCCceEEEEEeCCC---CC-CchHHHHHHHHHhhCC-CeEEEEecCCCCCCc------------------ceeccCCeE
Q 011969 1 MGRRGRACVVVLGDL---GR-SPRMQYQALSLARQMS-LEVDVVAYGGSKPHA------------------AILEHPSIH 57 (474)
Q Consensus 1 m~~~~~~~i~~~~~~---g~-~~r~~~~a~~l~~~~g-~eV~Vv~~~~~~~~~------------------~~~~~~gi~ 57 (474)
|.++.+++|+....+ +| +--....+..|+++ | |+|+||++....... .+.+..+-+
T Consensus 1 ~~~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~-G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~ 79 (462)
T PLN02846 1 MQKKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKD-GDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEER 79 (462)
T ss_pred CCCCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhc-CCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCe
Confidence 566677888888654 33 24455667788886 9 799999975321100 000111334
Q ss_pred EEEeecCCCCCCCC-----CchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEE
Q 011969 58 IHTMTQWPTIPRGL-----PKVLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIV 132 (474)
Q Consensus 58 i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~ 132 (474)
+.+++..+.+.+.- .+.......+.+.+ +..+||+||+++|..+...-.+...++..+. +|.
T Consensus 80 v~r~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l------------~~~~pDVIHv~tP~~LG~~~~g~~~~~k~~~-vV~ 146 (462)
T PLN02846 80 ISFLPKFSIKFYPGKFSTDKRSILPVGDISETI------------PDEEADIAVLEEPEHLTWYHHGKRWKTKFRL-VIG 146 (462)
T ss_pred EEEecccccccCcccccccccccCChHHHHHHH------------HhcCCCEEEEcCchhhhhHHHHHHHHhcCCc-EEE
Confidence 45555332211111 01000111122222 2278999999998655432112333333344 777
Q ss_pred EecCchhhhhhhccCCCchH-HHHHHHHHHHHhh-hcCEEEEeCHHHHHHHHHHhCCceEEEeCC-CCCCCCCCChHHHH
Q 011969 133 DWHNFGYTLLSLSLGRRSHF-VSIYRWIEKYYGK-MANGCLCVTQAMQHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKH 209 (474)
Q Consensus 133 ~~h~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~-~ad~vi~vS~~~~~~l~~~~~~~~~vi~n~-~~~~f~~~~~~~~~ 209 (474)
++|.....+.. ....... ..+.+.+.+++.+ .+|.+++.|..+++ +.+. .....+| +.++|++....
T Consensus 147 tyHT~y~~Y~~--~~~~g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~-l~~~----~i~~v~GVd~~~f~~~~~~--- 216 (462)
T PLN02846 147 IVHTNYLEYVK--REKNGRVKAFLLKYINSWVVDIYCHKVIRLSAATQD-YPRS----IICNVHGVNPKFLEIGKLK--- 216 (462)
T ss_pred EECCChHHHHH--HhccchHHHHHHHHHHHHHHHHhcCEEEccCHHHHH-HhhC----EEecCceechhhcCCCccc---
Confidence 89985222221 1111111 2233344444433 38999999997776 4432 2223356 44667655221
Q ss_pred HHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCC-CeEEEEEeecccCCCHHHHHHHHHHhHHHH
Q 011969 210 ELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNR-PALVVSSTSWTPDEDFGILLEAALMYDRRV 288 (474)
Q Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~ 288 (474)
..+..+ ..+. ...++|+||+.+.||++.|++|++.+.+.
T Consensus 217 -~~~~~~--------------------------------------~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~- 256 (462)
T PLN02846 217 -LEQQKN--------------------------------------GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKE- 256 (462)
T ss_pred -HhhhcC--------------------------------------CCCCcceEEEEEecCcccCCHHHHHHHHHHHHhh-
Confidence 111100 0111 12689999999999999999999988763
Q ss_pred hhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEe
Q 011969 289 AAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVC 368 (474)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~ 368 (474)
.|+++|+|+|+||+++++++.+++++++...|.|. .+...+|..+|+||+
T Consensus 257 --------------------------~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~----~~~~~~~~~~DvFv~ 306 (462)
T PLN02846 257 --------------------------LSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGR----DHADPLFHDYKVFLN 306 (462)
T ss_pred --------------------------CCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCC----CCHHHHHHhCCEEEE
Confidence 58899999999999999999999999853336665 344579999999999
Q ss_pred eccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 369 LHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 369 ~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
+|..|++|++++||||||+|||+++.++ .+++.++.+|+.++|.+++++++..++.+ ++ ++++..+++
T Consensus 307 ---pS~~Et~g~v~lEAmA~G~PVVa~~~~~-~~~v~~~~ng~~~~~~~~~a~ai~~~l~~---~~---~~~~~~a~~-- 374 (462)
T PLN02846 307 ---PSTTDVVCTTTAEALAMGKIVVCANHPS-NEFFKQFPNCRTYDDGKGFVRATLKALAE---EP---APLTDAQRH-- 374 (462)
T ss_pred ---CCCcccchHHHHHHHHcCCcEEEecCCC-cceeecCCceEecCCHHHHHHHHHHHHcc---Cc---hhHHHHHHH--
Confidence 7899999999999999999999999887 59999999999999999999999999985 22 233344443
Q ss_pred cccchHHHHHHHH
Q 011969 449 LSARWATEWEEHA 461 (474)
Q Consensus 449 ~~~~w~~~~~~~~ 461 (474)
.++|+...++.+
T Consensus 375 -~~SWe~~~~~l~ 386 (462)
T PLN02846 375 -ELSWEAATERFL 386 (462)
T ss_pred -hCCHHHHHHHHH
Confidence 677776665543
No 44
>PLN02949 transferase, transferring glycosyl groups
Probab=99.98 E-value=2e-29 Score=267.92 Aligned_cols=230 Identities=18% Similarity=0.249 Sum_probs=183.2
Q ss_pred HHHHHHHhhhcCEEEEeCHHHHHHHHHHhCC--ceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccc
Q 011969 157 RWIEKYYGKMANGCLCVTQAMQHELAQNWGI--KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAG 233 (474)
Q Consensus 157 ~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~--~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 233 (474)
.++++...+.||.++|.|+.+++.+.+.++. ++.++|++.+ +.+...+.
T Consensus 211 ~~l~~~~~~~ad~ii~nS~~t~~~l~~~~~~~~~i~vvyp~vd~~~~~~~~~---------------------------- 262 (463)
T PLN02949 211 AWMYGLVGRCAHLAMVNSSWTKSHIEALWRIPERIKRVYPPCDTSGLQALPL---------------------------- 262 (463)
T ss_pred HHHHHHHcCCCCEEEECCHHHHHHHHHHcCCCCCeEEEcCCCCHHHcccCCc----------------------------
Confidence 3456666789999999999999999887765 3678888743 22211100
Q ss_pred cCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccc
Q 011969 234 MEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQY 313 (474)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (474)
....+.+ .++++|++.+.||++.+|+|+..+.+++. .
T Consensus 263 -------------------~~~~~~~-~il~vGR~~~~Kg~~llI~A~~~l~~~~~-----------------------~ 299 (463)
T PLN02949 263 -------------------ERSEDPP-YIISVAQFRPEKAHALQLEAFALALEKLD-----------------------A 299 (463)
T ss_pred -------------------cccCCCC-EEEEEEeeeccCCHHHHHHHHHHHHHhcc-----------------------c
Confidence 0012223 78999999999999999999998765200 0
Q ss_pred cCCCEEEEEEeCCCCh------HHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHH
Q 011969 314 LYPRLLFIITGKGPDK------ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMF 386 (474)
Q Consensus 314 ~~~~~~l~ivG~g~~~------~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eam 386 (474)
..|+++|+|+|+++.. +++++.++++++ ++|.|+|. ++.+++..+|+.||+++. ++..|+||++++|||
T Consensus 300 ~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~-v~~~el~~ll~~a~~~v~---~s~~E~FGivvlEAM 375 (463)
T PLN02949 300 DVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKN-VSYRDLVRLLGGAVAGLH---SMIDEHFGISVVEYM 375 (463)
T ss_pred cCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCC-CCHHHHHHHHHhCcEEEe---CCccCCCChHHHHHH
Confidence 1468999999987431 568888999999 69999998 999999999999999998 788999999999999
Q ss_pred hcCCcEEEecccccc-ccccc---CCcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Q 011969 387 GCGLPVCAVSYSCIE-ELVKV---DKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAK 462 (474)
Q Consensus 387 a~G~PVia~~~~~~~-e~v~~---~~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 462 (474)
|||+|||+++.+|.. |++.+ +.+|++++|+++++++|.+++++ +++.+++|++++++.+.+++|+...++..+
T Consensus 376 A~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~~~~~la~ai~~ll~~---~~~~r~~m~~~ar~~~~~FS~e~~~~~~~~ 452 (463)
T PLN02949 376 AAGAVPIAHNSAGPKMDIVLDEDGQQTGFLATTVEEYADAILEVLRM---RETERLEIAAAARKRANRFSEQRFNEDFKD 452 (463)
T ss_pred HcCCcEEEeCCCCCcceeeecCCCCcccccCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 999999999988764 77765 67899999999999999999985 577889999999988888999887766544
Q ss_pred HH
Q 011969 463 PL 464 (474)
Q Consensus 463 ~~ 464 (474)
.+
T Consensus 453 ~i 454 (463)
T PLN02949 453 AI 454 (463)
T ss_pred HH
Confidence 33
No 45
>PLN02316 synthase/transferase
Probab=99.98 E-value=9.2e-29 Score=278.66 Aligned_cols=276 Identities=16% Similarity=0.163 Sum_probs=204.6
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHh------hCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEe
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASS------LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCV 173 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~v 173 (474)
.+|||||+|.. .+.+++.+++. +.++|+|+++|+..+ . .+ ..+.....||.|++|
T Consensus 708 ~~PDIIHaHDW---~talva~llk~~~~~~~~~~~p~V~TiHnl~~-------~-~n--------~lk~~l~~AD~ViTV 768 (1036)
T PLN02316 708 FHPDIIHCHDW---SSAPVAWLFKDHYAHYGLSKARVVFTIHNLEF-------G-AN--------HIGKAMAYADKATTV 768 (1036)
T ss_pred CCCCEEEECCC---hHHHHHHHHHHhhhhhccCCCCEEEEeCCccc-------c-hh--------HHHHHHHHCCEEEeC
Confidence 68999999994 44444555444 346899999999743 1 11 122355789999999
Q ss_pred CHHHHHHHHHHhC-----CceEEEeCCC-CCCCCCCCh-----------------HHHHHHHHhhhhccCCCCCcccccc
Q 011969 174 TQAMQHELAQNWG-----IKATVLYDQP-PEFFHPTSL-----------------EEKHELFCRLNKILHQPLGVQDCVS 230 (474)
Q Consensus 174 S~~~~~~l~~~~~-----~~~~vi~n~~-~~~f~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~~~~ 230 (474)
|+..++++..... .++.+|+||. .+.|.|... ..+..+++++|
T Consensus 769 S~tya~EI~~~~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lG-------------- 834 (1036)
T PLN02316 769 SPTYSREVSGNSAIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLG-------------- 834 (1036)
T ss_pred CHHHHHHHHhccCcccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhC--------------
Confidence 9999998876532 3489999994 456655421 11334555565
Q ss_pred ccccCCcCcchhhhhcccccccccC-CCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcC
Q 011969 231 NAGMEGQKADETIFTSLAGIDVFLK-PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISD 309 (474)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (474)
++ ++.| +++++||+.+.||++.|++|+..+.+
T Consensus 835 -----------------------L~~~d~p-lVg~VGRL~~qKGvdlLi~Al~~ll~----------------------- 867 (1036)
T PLN02316 835 -----------------------LKQADLP-LVGIITRLTHQKGIHLIKHAIWRTLE----------------------- 867 (1036)
T ss_pred -----------------------CCcccCe-EEEEEeccccccCHHHHHHHHHHHhh-----------------------
Confidence 22 2344 89999999999999999999998755
Q ss_pred CccccCCCEEEEEEeCCCC---hHHHHHHHHHcCC---CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHH
Q 011969 310 GKQYLYPRLLFIITGKGPD---KESYEEKIRRLRL---KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVV 383 (474)
Q Consensus 310 ~~~~~~~~~~l~ivG~g~~---~~~~~~~~~~l~l---~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~ 383 (474)
++++|+|+|+||+ .+.++++++++++ ++|.|.+. .+......+|+.||++|+ ||..|+||++.+
T Consensus 868 ------~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~-~de~lah~iyaaADiflm---PS~~EP~GLvqL 937 (1036)
T PLN02316 868 ------RNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLT-YDEPLSHLIYAGADFILV---PSIFEPCGLTQL 937 (1036)
T ss_pred ------cCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEec-CCHHHHHHHHHhCcEEEe---CCcccCccHHHH
Confidence 4689999999986 3578888888865 58999987 444444589999999999 799999999999
Q ss_pred HHHhcCCcEEEecccccccccccC-------------CcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 384 DMFGCGLPVCAVSYSCIEELVKVD-------------KNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 384 Eama~G~PVia~~~~~~~e~v~~~-------------~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
|||+||+|+|+++.||+.|+|.++ .+|++++ |+++|+.+|.+++..+...+..+.++++++. .
T Consensus 938 EAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m--~ 1015 (1036)
T PLN02316 938 TAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVM--E 1015 (1036)
T ss_pred HHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--H
Confidence 999999999999999999999874 6999997 6999999999999864323333333333333 2
Q ss_pred cccchHHHHHHHHHHHHHHH
Q 011969 449 LSARWATEWEEHAKPLITEV 468 (474)
Q Consensus 449 ~~~~w~~~~~~~~~~~~~~~ 468 (474)
+.++|+...+++. .+++++
T Consensus 1016 ~dFSW~~~A~~Y~-~LY~~a 1034 (1036)
T PLN02316 1016 QDWSWNRPALDYM-ELYHSA 1034 (1036)
T ss_pred hhCCHHHHHHHHH-HHHHHH
Confidence 4788988776653 444443
No 46
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.97 E-value=1.6e-29 Score=254.02 Aligned_cols=273 Identities=21% Similarity=0.244 Sum_probs=210.5
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (474)
.++|+||++++..... +..+.|+++++|+..+..... .........++.+++.+.+.+|.++++|+.+++
T Consensus 84 ~~~Dii~~~~~~~~~~--------~~~~~~~i~~~hd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~ 153 (365)
T cd03809 84 LGLDLLHSPHNTAPLL--------RLRGVPVVVTIHDLIPLRFPE--YFSPGFRRYFRRLLRRALRRADAIITVSEATKR 153 (365)
T ss_pred cCCCeeeecccccCcc--------cCCCCCEEEEeccchhhhCcc--cCCHHHHHHHHHHHHHHHHHcCEEEEccHHHHH
Confidence 7899999998543322 567899999999985322211 111122456678888899999999999999999
Q ss_pred HHHHHhCC---ceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccC
Q 011969 180 ELAQNWGI---KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLK 255 (474)
Q Consensus 180 ~l~~~~~~---~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (474)
.+.+.++. ++.+++|+.+ ..+.+..... ..... .
T Consensus 154 ~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~----~~~~~-------------------------------------~- 191 (365)
T cd03809 154 DLLRYLGVPPDKIVVIPLGVDPRFRPPPAEAE----VLRAL-------------------------------------Y- 191 (365)
T ss_pred HHHHHhCcCHHHEEeeccccCccccCCCchHH----HHHHh-------------------------------------c-
Confidence 99988763 3889999855 3443332111 11111 1
Q ss_pred CCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh-HHHHH
Q 011969 256 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-ESYEE 334 (474)
Q Consensus 256 ~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~-~~~~~ 334 (474)
...+..++|+|++.+.||++.+++++..+.+. .++++|+++|.++.. ....+
T Consensus 192 ~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~---------------------------~~~~~l~i~G~~~~~~~~~~~ 244 (365)
T cd03809 192 LLPRPYFLYVGTIEPRKNLERLLEAFARLPAK---------------------------GPDPKLVIVGKRGWLNEELLA 244 (365)
T ss_pred CCCCCeEEEeCCCccccCHHHHHHHHHHHHHh---------------------------cCCCCEEEecCCccccHHHHH
Confidence 22334899999999999999999999999873 557999999987543 33334
Q ss_pred HHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEe
Q 011969 335 KIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF 413 (474)
Q Consensus 335 ~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~ 413 (474)
.+++++. ++|.+.|. ++.+++..+|+.||++++ |+..|++|++++|||++|+|||+++.+++.|++. .+|+++
T Consensus 245 ~~~~~~~~~~v~~~g~-~~~~~~~~~~~~~d~~l~---ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~--~~~~~~ 318 (365)
T cd03809 245 RLRELGLGDRVRFLGY-VSDEELAALYRGARAFVF---PSLYEGFGLPVLEAMACGTPVIASNISSLPEVAG--DAALYF 318 (365)
T ss_pred HHHHcCCCCeEEECCC-CChhHHHHHHhhhhhhcc---cchhccCCCCHHHHhcCCCcEEecCCCCccceec--Cceeee
Confidence 4456777 79999998 999999999999999999 6777999999999999999999999999999884 456666
Q ss_pred C--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHH
Q 011969 414 S--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHA 461 (474)
Q Consensus 414 ~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 461 (474)
. |.++++++|.++++ |++.++++++++.+...+++|+...++++
T Consensus 319 ~~~~~~~~~~~i~~l~~----~~~~~~~~~~~~~~~~~~~sw~~~~~~~~ 364 (365)
T cd03809 319 DPLDPEALAAAIERLLE----DPALREELRERGLARAKRFSWEKTARRTL 364 (365)
T ss_pred CCCCHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4 79999999999988 48999999999988777898887766543
No 47
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.97 E-value=2.4e-29 Score=252.11 Aligned_cols=310 Identities=14% Similarity=0.091 Sum_probs=214.0
Q ss_pred CCCCCchH-HHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 011969 14 DLGRSPRM-QYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLL 92 (474)
Q Consensus 14 ~~g~~~r~-~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (474)
..||..+. ...+..|.++ ||+|++++......... ............ ........... ...+
T Consensus 17 ~~GG~~~~~~~l~~~L~~~-g~~V~v~~~~~~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~ 79 (335)
T cd03802 17 AYGGTERVVAALTEGLVAR-GHEVTLFASGDSKTAAP--------LVPVVPEPLRLD-APGRDRAEAEA-------LALA 79 (335)
T ss_pred ccCcHHHHHHHHHHHHHhc-CceEEEEecCCCCcccc--------eeeccCCCcccc-cchhhHhhHHH-------HHHH
Confidence 56777774 4556777776 99999999776532211 111110000000 00000000000 1111
Q ss_pred HHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEE
Q 011969 93 WFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLC 172 (474)
Q Consensus 93 ~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~ 172 (474)
...+ +..+||+||+|.+..... +++..+.|+|++.|+... ..... .......++.+++
T Consensus 80 ~~~~-~~~~~Divh~~~~~~~~~------~~~~~~~~~v~~~h~~~~-------~~~~~--------~~~~~~~~~~~~~ 137 (335)
T cd03802 80 ERAL-AAGDFDIVHNHSLHLPLP------FARPLPVPVVTTLHGPPD-------PELLK--------LYYAARPDVPFVS 137 (335)
T ss_pred HHHH-hcCCCCEEEecCcccchh------hhcccCCCEEEEecCCCC-------cccch--------HHHhhCcCCeEEE
Confidence 1222 337899999998533221 456778999999998842 11111 1123356789999
Q ss_pred eCHHHHHHHHHHhCCceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccc
Q 011969 173 VTQAMQHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGID 251 (474)
Q Consensus 173 vS~~~~~~l~~~~~~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (474)
+|+..++.+... .++.+++|+.+ +.|++.+
T Consensus 138 ~s~~~~~~~~~~--~~~~vi~ngvd~~~~~~~~----------------------------------------------- 168 (335)
T cd03802 138 ISDAQRRPWPPL--PWVATVHNGIDLDDYPFRG----------------------------------------------- 168 (335)
T ss_pred ecHHHHhhcccc--cccEEecCCcChhhCCCCC-----------------------------------------------
Confidence 999998776553 56889999854 4454321
Q ss_pred cccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHH
Q 011969 252 VFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKES 331 (474)
Q Consensus 252 ~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~ 331 (474)
.+++ .++|+|++.+.||++.++++++. .+++|+|+|.|+..+.
T Consensus 169 ----~~~~-~i~~~Gr~~~~Kg~~~li~~~~~--------------------------------~~~~l~i~G~~~~~~~ 211 (335)
T cd03802 169 ----PKGD-YLLFLGRISPEKGPHLAIRAARR--------------------------------AGIPLKLAGPVSDPDY 211 (335)
T ss_pred ----CCCC-EEEEEEeeccccCHHHHHHHHHh--------------------------------cCCeEEEEeCCCCHHH
Confidence 1122 78999999999999999998753 4689999999988777
Q ss_pred HHHHHHHcC-C-CcEEEecCCCCcccHHHHHhcccEEEeeccCC-CCCCCchHHHHHHhcCCcEEEecccccccccccCC
Q 011969 332 YEEKIRRLR-L-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDK 408 (474)
Q Consensus 332 ~~~~~~~l~-l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s-~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~ 408 (474)
.....++.. + ++|.|.|. ++.+++..+|+.||++++ ++ ..|++|++++||||||+|||+++.++..|++.++.
T Consensus 212 ~~~~~~~~~~~~~~v~~~G~-~~~~~~~~~~~~~d~~v~---ps~~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~~~ 287 (335)
T cd03802 212 FYREIAPELLDGPDIEYLGE-VGGAEKAELLGNARALLF---PILWEEPFGLVMIEAMACGTPVIAFRRGAVPEVVEDGV 287 (335)
T ss_pred HHHHHHHhcccCCcEEEeCC-CCHHHHHHHHHhCcEEEe---CCcccCCcchHHHHHHhcCCCEEEeCCCCchhheeCCC
Confidence 777766664 3 79999998 999999999999999999 45 46999999999999999999999999999999999
Q ss_pred cEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHH
Q 011969 409 NGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHA 461 (474)
Q Consensus 409 ~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 461 (474)
+|++++++++++++|..+.+. + .+..++.+.+ +++|+..-+++.
T Consensus 288 ~g~l~~~~~~l~~~l~~l~~~----~--~~~~~~~~~~---~~s~~~~~~~~~ 331 (335)
T cd03802 288 TGFLVDSVEELAAAVARADRL----D--RAACRRRAER---RFSAARMVDDYL 331 (335)
T ss_pred cEEEeCCHHHHHHHHHHHhcc----H--HHHHHHHHHH---hCCHHHHHHHHH
Confidence 999999999999999998763 2 2344444444 777776555443
No 48
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.97 E-value=1.3e-29 Score=270.53 Aligned_cols=274 Identities=17% Similarity=0.207 Sum_probs=214.4
Q ss_pred cCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhcc--C------CCchHHHHHHHHHHHHhhhcCEE
Q 011969 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSL--G------RRSHFVSIYRWIEKYYGKMANGC 170 (474)
Q Consensus 99 ~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~--~------~~~~~~~~~~~~e~~~~~~ad~v 170 (474)
..++|++|+|+++. ..+++.++++..++|+|++.|+.......... . .++.+.+++..+++.+++.||.+
T Consensus 171 ~~~~dviH~~s~~~--~g~~~~~~~~~~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~I 248 (475)
T cd03813 171 LPKADVYHAVSTGY--AGLLGALAKARRGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRI 248 (475)
T ss_pred CCCCCEEeccCcch--HHHHHHHHHHHhCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 46899999998532 33346677778899999999997321100000 0 01222355678889999999999
Q ss_pred EEeCHHHHHHHHHHhCC---ceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhc
Q 011969 171 LCVTQAMQHELAQNWGI---KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTS 246 (474)
Q Consensus 171 i~vS~~~~~~l~~~~~~---~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (474)
+++|+..++.+.+ .|. ++.++||+.+ +.|.+....
T Consensus 249 i~~s~~~~~~~~~-~g~~~~ki~vIpNgid~~~f~~~~~~---------------------------------------- 287 (475)
T cd03813 249 TTLYEGNRERQIE-DGADPEKIRVIPNGIDPERFAPARRA---------------------------------------- 287 (475)
T ss_pred EecCHHHHHHHHH-cCCCHHHeEEeCCCcCHHHcCCcccc----------------------------------------
Confidence 9999999877655 454 3889999954 445443210
Q ss_pred ccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCC
Q 011969 247 LAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG 326 (474)
Q Consensus 247 ~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g 326 (474)
...+.+.+++|+|++.+.||++.+++|++.+.++ .|+++|+|+|+|
T Consensus 288 -------~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~---------------------------~p~~~l~IvG~g 333 (475)
T cd03813 288 -------RPEKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKK---------------------------IPDAEGWVIGPT 333 (475)
T ss_pred -------ccCCCCcEEEEEeccccccCHHHHHHHHHHHHHh---------------------------CCCeEEEEECCC
Confidence 0122334899999999999999999999998773 689999999998
Q ss_pred CC----hHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccc
Q 011969 327 PD----KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIE 401 (474)
Q Consensus 327 ~~----~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~ 401 (474)
++ .+++++.++++++ ++|.|+| .+++..+|+.||++|+ +|..|++|++++||||||+|||+|+.++..
T Consensus 334 ~~~~~~~~e~~~li~~l~l~~~V~f~G----~~~v~~~l~~aDv~vl---pS~~Eg~p~~vlEAma~G~PVVatd~g~~~ 406 (475)
T cd03813 334 DEDPEYAEECRELVESLGLEDNVKFTG----FQNVKEYLPKLDVLVL---TSISEGQPLVILEAMAAGIPVVATDVGSCR 406 (475)
T ss_pred CcChHHHHHHHHHHHHhCCCCeEEEcC----CccHHHHHHhCCEEEe---CchhhcCChHHHHHHHcCCCEEECCCCChH
Confidence 53 3556778889998 7999998 4889999999999999 688899999999999999999999999999
Q ss_pred ccccc------CCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHH
Q 011969 402 ELVKV------DKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEH 460 (474)
Q Consensus 402 e~v~~------~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~ 460 (474)
|++.+ +.+|++++ |+++++++|.+++++ ++.+++|++++++.+ ..++|+...++.
T Consensus 407 elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~----~~~~~~~~~~a~~~v~~~~s~~~~~~~y 470 (475)
T cd03813 407 ELIEGADDEALGPAGEVVPPADPEALARAILRLLKD----PELRRAMGEAGRKRVERYYTLERMIDSY 470 (475)
T ss_pred HHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99988 56999986 799999999999984 889999999998865 346776655543
No 49
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.97 E-value=4.9e-29 Score=247.88 Aligned_cols=272 Identities=24% Similarity=0.331 Sum_probs=211.1
Q ss_pred cCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHH
Q 011969 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (474)
Q Consensus 99 ~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (474)
..+||+||++.+ .+...+.....+..++|++++.|+...... ... ...+..++...+.+|.++++|+.++
T Consensus 91 ~~~~dii~~~~~--~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-------~~~-~~~~~~~~~~~~~~d~ii~~s~~~~ 160 (377)
T cd03798 91 RFRPDLIHAHFA--YPDGFAAALLKRKLGIPLVVTLHGSDVNLL-------PRK-RLLRALLRRALRRADAVIAVSEALA 160 (377)
T ss_pred cCCCCEEEEecc--chHHHHHHHHHHhcCCCEEEEeecchhccc-------Cch-hhHHHHHHHHHhcCCeEEeCCHHHH
Confidence 479999999964 334444566666778899999999843111 111 1345677788899999999999999
Q ss_pred HHHHHH--hCCceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccC
Q 011969 179 HELAQN--WGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLK 255 (474)
Q Consensus 179 ~~l~~~--~~~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (474)
+.+.+. .+.++.+++++.+ ..+.+...... .+++ .
T Consensus 161 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~--------------------------------------~ 198 (377)
T cd03798 161 DELKALGIDPEKVTVIPNGVDTERFSPADRAEA----RKLG--------------------------------------L 198 (377)
T ss_pred HHHHHhcCCCCceEEcCCCcCcccCCCcchHHH----Hhcc--------------------------------------C
Confidence 999886 3456899999854 44444322111 1111 1
Q ss_pred CCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHH
Q 011969 256 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEK 335 (474)
Q Consensus 256 ~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~ 335 (474)
.+.+..++++|++.+.||++.+++++..+.++ .++++|+|+|.++..+.+++.
T Consensus 199 ~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~---------------------------~~~~~l~i~g~~~~~~~~~~~ 251 (377)
T cd03798 199 PEDKKVILFVGRLVPRKGIDYLIEALARLLKK---------------------------RPDVHLVIVGDGPLREALEAL 251 (377)
T ss_pred CCCceEEEEeccCccccCHHHHHHHHHHHHhc---------------------------CCCeEEEEEcCCcchHHHHHH
Confidence 23345899999999999999999999998762 678999999999988889999
Q ss_pred HHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEeC
Q 011969 336 IRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS 414 (474)
Q Consensus 336 ~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~ 414 (474)
++++++ ++|.+.|. ++.+++..+++.||++++ ++..+++|.+++|||+||+|||+++.++..+++.++.+|++++
T Consensus 252 ~~~~~~~~~v~~~g~-~~~~~~~~~~~~ad~~i~---~~~~~~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~~~g~~~~ 327 (377)
T cd03798 252 AAELGLEDRVTFLGA-VPHEEVPAYYAAADVFVL---PSLREGFGLVLLEAMACGLPVVATDVGGIPEIITDGENGLLVP 327 (377)
T ss_pred HHhcCCcceEEEeCC-CCHHHHHHHHHhcCeeec---chhhccCChHHHHHHhcCCCEEEecCCChHHHhcCCcceeEEC
Confidence 998888 69999998 999999999999999999 5666899999999999999999999999999999999999986
Q ss_pred --CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hccccchHHHHHH
Q 011969 415 --SSSELADQLLMLFKGFPDDSDVLKKLRNGTLE-MGLSARWATEWEE 459 (474)
Q Consensus 415 --~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~ 459 (474)
|+++++++|.+++++ ++. ++..++.+ ....++|+...++
T Consensus 328 ~~~~~~l~~~i~~~~~~----~~~--~~~~~~~~~~~~~~s~~~~~~~ 369 (377)
T cd03798 328 PGDPEALAEAILRLLAD----PWL--RLGRAARRRVAERFSWENVAER 369 (377)
T ss_pred CCCHHHHHHHHHHHhcC----cHH--HHhHHHHHHHHHHhhHHHHHHH
Confidence 799999999999986 443 34444433 3356777654444
No 50
>PRK14098 glycogen synthase; Provisional
Probab=99.97 E-value=1.1e-28 Score=264.44 Aligned_cols=293 Identities=14% Similarity=0.152 Sum_probs=214.1
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhh-------CCCcEEEEecCchhhhhh----h-ccCCCchHHHHH-----HHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSL-------RRSAFIVDWHNFGYTLLS----L-SLGRRSHFVSIY-----RWIEKY 162 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~h~~~~~~~~----~-~~~~~~~~~~~~-----~~~e~~ 162 (474)
.+||+||+|+ +.+.++..+++.. .++|+|+++|+..+.... . ..-+...+.... ..+.+.
T Consensus 140 ~~pDiiH~hd---w~t~l~~~~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~ 216 (489)
T PRK14098 140 WKPDIIHCHD---WYAGLVPLLLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYT 216 (489)
T ss_pred CCCCEEEecC---cHHHHHHHHHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHH
Confidence 5899999998 4444445555432 379999999997531100 0 000000000000 124456
Q ss_pred HhhhcCEEEEeCHHHHHHHHHH----hC---------CceEEEeCCC-CCCCCCCChH----------------HHHHHH
Q 011969 163 YGKMANGCLCVTQAMQHELAQN----WG---------IKATVLYDQP-PEFFHPTSLE----------------EKHELF 212 (474)
Q Consensus 163 ~~~~ad~vi~vS~~~~~~l~~~----~~---------~~~~vi~n~~-~~~f~~~~~~----------------~~~~~~ 212 (474)
.++.||.|+++|+..++++.+. +| .++.+|+||. .+.|.|.... .+..++
T Consensus 217 ~i~~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k~~~k~~l~ 296 (489)
T PRK14098 217 GVEHADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGKLENKKALL 296 (489)
T ss_pred HHHhcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhHHHHHHHHH
Confidence 6789999999999999988652 12 3589999994 4677765321 123344
Q ss_pred HhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhh
Q 011969 213 CRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAIL 292 (474)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~ 292 (474)
+++|+ ...++.| +++++||+.+.||++.|++|+..+.+
T Consensus 297 ~~lgl-----------------------------------~~~~~~~-~i~~vgRl~~~KG~d~li~a~~~l~~------ 334 (489)
T PRK14098 297 EEVGL-----------------------------------PFDEETP-LVGVIINFDDFQGAELLAESLEKLVE------ 334 (489)
T ss_pred HHhCC-----------------------------------CCccCCC-EEEEeccccccCcHHHHHHHHHHHHh------
Confidence 44441 0113344 89999999999999999999998865
Q ss_pred ccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeec
Q 011969 293 NEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLH 370 (474)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~ 370 (474)
++++|+|+|+|+. .+.+++.+++++ ++|.|.|. ++.+++..+|+.||++++
T Consensus 335 -----------------------~~~~lvivG~G~~~~~~~l~~l~~~~~-~~V~~~g~-~~~~~~~~~~a~aDi~l~-- 387 (489)
T PRK14098 335 -----------------------LDIQLVICGSGDKEYEKRFQDFAEEHP-EQVSVQTE-FTDAFFHLAIAGLDMLLM-- 387 (489)
T ss_pred -----------------------cCcEEEEEeCCCHHHHHHHHHHHHHCC-CCEEEEEe-cCHHHHHHHHHhCCEEEe--
Confidence 4799999999975 467888888775 68999998 899999999999999999
Q ss_pred cCCCCCCCchHHHHHHhcCCcEEEeccccccccccc----CCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 011969 371 TSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKV----DKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGT 444 (474)
Q Consensus 371 ~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~----~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~ 444 (474)
||..|+||++.+|||+||+|+|+++.||..|.+.+ +.+|++++ |+++|+++|.++++.+. +++.++++++++
T Consensus 388 -PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~~~~-~~~~~~~~~~~~ 465 (489)
T PRK14098 388 -PGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALALYH-DEERWEELVLEA 465 (489)
T ss_pred -CCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHHHHc-CHHHHHHHHHHH
Confidence 78899999999999999999999999999988864 67999996 79999999998765332 577788888777
Q ss_pred HHhccccchHHHHHHHHHHHHHHHh
Q 011969 445 LEMGLSARWATEWEEHAKPLITEVI 469 (474)
Q Consensus 445 ~~~~~~~~w~~~~~~~~~~~~~~~~ 469 (474)
.+ +.++|+...+++ ..+++++.
T Consensus 466 ~~--~~fsw~~~a~~y-~~lY~~~~ 487 (489)
T PRK14098 466 ME--RDFSWKNSAEEY-AQLYRELL 487 (489)
T ss_pred hc--CCCChHHHHHHH-HHHHHHHh
Confidence 43 578998887775 44555543
No 51
>PLN00142 sucrose synthase
Probab=99.97 E-value=6e-29 Score=274.67 Aligned_cols=306 Identities=14% Similarity=0.116 Sum_probs=210.2
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCC---chHHHHH--HHHHHHHhhhcCEEEEeC
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRR---SHFVSIY--RWIEKYYGKMANGCLCVT 174 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~---~~~~~~~--~~~e~~~~~~ad~vi~vS 174 (474)
.+||+||.|. ..+.+++..+++..++|++.+.|..+-.....+-... ..-..+. ...|..+...||.||+.|
T Consensus 407 ~~PDlIHaHY---wdsg~vA~~La~~lgVP~v~T~HsL~k~K~~~~~~~~~~~e~~y~~~~r~~aE~~a~~~Ad~IIasT 483 (815)
T PLN00142 407 GKPDLIIGNY---SDGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKFDDKYHFSCQFTADLIAMNHADFIITST 483 (815)
T ss_pred CCCCEEEECC---ccHHHHHHHHHHHhCCCEEEEcccchhhhccccCCcccccchhhhhhhchHHHHHHHHhhhHHHhCc
Confidence 4799999997 5666678888999999999999987532221110000 0011111 245788888999999999
Q ss_pred HHHHHHHH-------HH------------hCC-----ceEEEeCCC-CCCCCCCChHHHHHHHHhhhhccCCCCCccccc
Q 011969 175 QAMQHELA-------QN------------WGI-----KATVLYDQP-PEFFHPTSLEEKHELFCRLNKILHQPLGVQDCV 229 (474)
Q Consensus 175 ~~~~~~l~-------~~------------~~~-----~~~vi~n~~-~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 229 (474)
......+. .. .|+ ++.++++|. ...|.|.....+ .+ ..+.
T Consensus 484 ~qEi~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~-rl-~~l~------------- 548 (815)
T PLN00142 484 YQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQK-RL-TSLH------------- 548 (815)
T ss_pred HHHHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHh-hH-Hhhc-------------
Confidence 87764221 10 012 467888884 455666542211 10 0000
Q ss_pred cccccCCcCcchhhhhcccc-ccccc--CCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhh
Q 011969 230 SNAGMEGQKADETIFTSLAG-IDVFL--KPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKE 306 (474)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (474)
+..++..|..... ..... .++.| +|+++||+.+.||++.|++|+..+.+.
T Consensus 549 -------n~I~~~l~~~~~~~e~lg~l~~~~kp-vIl~VGRL~~~KGid~LIeA~a~l~~l------------------- 601 (815)
T PLN00142 549 -------PSIEELLYSPEQNDEHIGYLKDRKKP-IIFSMARLDRVKNLTGLVEWYGKNKRL------------------- 601 (815)
T ss_pred -------ccchhhcCChHHHHHHhCCccCCCCc-EEEEEecCcccCCHHHHHHHHHHHHHh-------------------
Confidence 0000001100000 00011 23455 899999999999999999999987652
Q ss_pred hcCCccccCCCEEEEEEeCCCC------h------HHHHHHHHHcCC-CcEEEecCC---CCcccHHHHHh-cccEEEee
Q 011969 307 ISDGKQYLYPRLLFIITGKGPD------K------ESYEEKIRRLRL-KRVAFRTMW---LSAEDYPLLLG-SADLGVCL 369 (474)
Q Consensus 307 ~~~~~~~~~~~~~l~ivG~g~~------~------~~~~~~~~~l~l-~~V~f~g~~---v~~~~~~~~l~-~adv~v~~ 369 (474)
.++++|+|+|+|.+ . +.+.+.++++++ ++|.|+|.. ++.+++..++. .+|++|+
T Consensus 602 --------~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVl- 672 (815)
T PLN00142 602 --------RELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQ- 672 (815)
T ss_pred --------CCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEe-
Confidence 56899999998721 1 236677889998 799999851 23356666666 4799999
Q ss_pred ccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 011969 370 HTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 447 (474)
Q Consensus 370 ~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 447 (474)
||..|+||++++||||||+|||+|+.||+.|+|.++.+|++++ |+++++++|..+++..-.|++.+++|++++++.
T Consensus 673 --PS~~EgFGLvvLEAMA~GlPVVATdvGG~~EIV~dG~tG~LV~P~D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~r 750 (815)
T PLN00142 673 --PALYEAFGLTVVEAMTCGLPTFATCQGGPAEIIVDGVSGFHIDPYHGDEAANKIADFFEKCKEDPSYWNKISDAGLQR 750 (815)
T ss_pred --CCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999996 799999999887642223699999999999886
Q ss_pred c-cccchHHHHHHHH
Q 011969 448 G-LSARWATEWEEHA 461 (474)
Q Consensus 448 ~-~~~~w~~~~~~~~ 461 (474)
+ +.|+|+...+++.
T Consensus 751 v~e~FSWe~~A~rll 765 (815)
T PLN00142 751 IYECYTWKIYAERLL 765 (815)
T ss_pred HHHhCCHHHHHHHHH
Confidence 5 6788877665543
No 52
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.97 E-value=1.4e-28 Score=242.90 Aligned_cols=326 Identities=23% Similarity=0.274 Sum_probs=225.9
Q ss_pred CCCCCchH-HHHHHHHHhhCCCeEEEEecCCCCCCcceeccCC--eEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 011969 14 DLGRSPRM-QYQALSLARQMSLEVDVVAYGGSKPHAAILEHPS--IHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFM 90 (474)
Q Consensus 14 ~~g~~~r~-~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~g--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (474)
..||..+. ...+..|.++ ||+|++++............... ....... ............+.+.+
T Consensus 10 ~~gG~~~~~~~l~~~l~~~-g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~----- 77 (353)
T cd03811 10 GGGGAERVLLNLANGLDKR-GYDVTLVVLRDEGDYLELLPSNVKLIPVRVLK------LKSLRDLLAILRLRRLL----- 77 (353)
T ss_pred cCCCcchhHHHHHHHHHhc-CceEEEEEcCCCCccccccccchhhhceeeee------cccccchhHHHHHHHHH-----
Confidence 36666664 4556777675 99999999765443211111100 0111111 00111111222222222
Q ss_pred HHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEE
Q 011969 91 LLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGC 170 (474)
Q Consensus 91 ~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~v 170 (474)
+..+||+||+++. ....++..+..+. +.|++++.|+...... ..... .. .+++...+.+|.+
T Consensus 78 -------~~~~~dii~~~~~--~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~----~~~~~-~~---~~~~~~~~~~d~i 139 (353)
T cd03811 78 -------RKEKPDVVISHLT--TTPNVLALLAARL-GTKLIVWEHNSLSLEL----KRKLR-LL---LLIRKLYRRADKI 139 (353)
T ss_pred -------HhcCCCEEEEcCc--cchhHHHHHHhhc-CCceEEEEcCcchhhh----ccchh-HH---HHHHhhccccceE
Confidence 2268999999986 2233334444444 7999999999853211 11111 01 5677888999999
Q ss_pred EEeCHHHHHHHHHHhC---CceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhc
Q 011969 171 LCVTQAMQHELAQNWG---IKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTS 246 (474)
Q Consensus 171 i~vS~~~~~~l~~~~~---~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (474)
+++|+.+++.+.+.++ .++.+++|+.+ ..+.+...... .+
T Consensus 140 i~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~-----~~------------------------------- 183 (353)
T cd03811 140 VAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEPL-----EL------------------------------- 183 (353)
T ss_pred EEeccchhhhHHHhhcCCccccEEecCCcChhhcCcccchhh-----hc-------------------------------
Confidence 9999999999998877 34899999854 33333221100 00
Q ss_pred ccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCC
Q 011969 247 LAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG 326 (474)
Q Consensus 247 ~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g 326 (474)
...+.+..++++|++.+.||++.++++++.+.++ .++++|+|+|.|
T Consensus 184 -------~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~---------------------------~~~~~l~i~G~~ 229 (353)
T cd03811 184 -------GIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKE---------------------------GPDARLVILGDG 229 (353)
T ss_pred -------CCCCCceEEEEEecchhhcChHHHHHHHHHhhhc---------------------------CCCceEEEEcCC
Confidence 1123445899999999999999999999998773 578999999999
Q ss_pred CChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccc
Q 011969 327 PDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVK 405 (474)
Q Consensus 327 ~~~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~ 405 (474)
+..+.+++.++++++ ++|.+.|. .+++..+++.||++++ ++..|++|++++|||+||+|||+++.++..|++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~~d~~i~---ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~~e~i~ 303 (353)
T cd03811 230 PLREELEALAKELGLADRVHFLGF---QSNPYPYLKAADLFVL---SSRYEGFPNVLLEAMALGTPVVATDCPGPREILE 303 (353)
T ss_pred ccHHHHHHHHHhcCCCccEEEecc---cCCHHHHHHhCCEEEe---CcccCCCCcHHHHHHHhCCCEEEcCCCChHHHhc
Confidence 999989999999998 68999997 5789999999999999 6777999999999999999999999999999999
Q ss_pred cCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011969 406 VDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 446 (474)
Q Consensus 406 ~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 446 (474)
++.+|++++ +.+++++.+..+.+. ..+++.++++++++.+
T Consensus 304 ~~~~g~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~ 345 (353)
T cd03811 304 DGENGLLVPVGDEAALAAAALALLDL-LLDPELRERLAAAARE 345 (353)
T ss_pred CCCceEEECCCCHHHHHHHHHHHHhc-cCChHHHHHHHHHHHH
Confidence 999999996 577884444443332 2257788888886655
No 53
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.97 E-value=1.6e-28 Score=245.42 Aligned_cols=323 Identities=20% Similarity=0.220 Sum_probs=218.8
Q ss_pred CCCCchHH-HHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 011969 15 LGRSPRMQ-YQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLW 93 (474)
Q Consensus 15 ~g~~~r~~-~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (474)
.||..++. ..+..|.++ ||+|++++........... ..+........+................... ......+.
T Consensus 14 ~gG~~~~~~~l~~~L~~~-g~~v~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 89 (359)
T cd03823 14 VGGAEVVAHDLAEALAKR-GHEVAVLTAGEDPPRQDKE-VIGVVVYGRPIDEVLRSALPRDLFHLSDYDN--PAVVAEFA 89 (359)
T ss_pred ccchHHHHHHHHHHHHhc-CCceEEEeCCCCCCCcccc-cccceeeccccccccCCCchhhhhHHHhccC--HHHHHHHH
Confidence 35666644 567888876 9999999977544322221 2233332221000101111111111110000 00111111
Q ss_pred HHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEe
Q 011969 94 FLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCV 173 (474)
Q Consensus 94 ~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~v 173 (474)
.++ +..+||+||++++..+... .....+..++|+++++|+++. ..... ....+..|.++++
T Consensus 90 ~~~-~~~~~dii~~~~~~~~~~~--~~~~~~~~~~~~i~~~hd~~~------~~~~~----------~~~~~~~d~ii~~ 150 (359)
T cd03823 90 RLL-EDFRPDVVHFHHLQGLGVS--ILRAARDRGIPIVLTLHDYWL------ICPRQ----------GLFKKGGDAVIAP 150 (359)
T ss_pred HHH-HHcCCCEEEECCccchHHH--HHHHHHhcCCCEEEEEeeeee------ecchh----------hhhccCCCEEEEe
Confidence 222 2378999999986433322 333344567999999999742 11100 1111233999999
Q ss_pred CHHHHHHHHHHhC--CceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccccc
Q 011969 174 TQAMQHELAQNWG--IKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGI 250 (474)
Q Consensus 174 S~~~~~~l~~~~~--~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (474)
|+.+++.+.+... .++.+++|+.+ ..+.+...
T Consensus 151 s~~~~~~~~~~~~~~~~~~vi~n~~~~~~~~~~~~--------------------------------------------- 185 (359)
T cd03823 151 SRFLLDRYVANGLFAEKISVIRNGIDLDRAKRPRR--------------------------------------------- 185 (359)
T ss_pred CHHHHHHHHHcCCCccceEEecCCcChhhcccccc---------------------------------------------
Confidence 9999998887644 35899999854 33322110
Q ss_pred ccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChH
Q 011969 251 DVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKE 330 (474)
Q Consensus 251 ~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~ 330 (474)
..++.+..++|+|++.+.||++.++++++.+.+ ++++|+++|.++...
T Consensus 186 ---~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~-----------------------------~~~~l~i~G~~~~~~ 233 (359)
T cd03823 186 ---APPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR-----------------------------GDIELVIVGNGLELE 233 (359)
T ss_pred ---CCCCCceEEEEEecCccccCHHHHHHHHHHHHh-----------------------------cCcEEEEEcCchhhh
Confidence 013344589999999999999999999998754 579999999988765
Q ss_pred HHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCC-CCCCchHHHHHHhcCCcEEEecccccccccccCC
Q 011969 331 SYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS-GLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDK 408 (474)
Q Consensus 331 ~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~-~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~ 408 (474)
...... +. ++|.+.|. ++.+++..+|+.||++++ |+. .|++|++++|||+||+|||+++.++..|++.++.
T Consensus 234 ~~~~~~---~~~~~v~~~g~-~~~~~~~~~~~~ad~~i~---ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~~ 306 (359)
T cd03823 234 EESYEL---EGDPRVEFLGA-YPQEEIDDFYAEIDVLVV---PSIWPENFPLVIREALAAGVPVIASDIGGMAELVRDGV 306 (359)
T ss_pred HHHHhh---cCCCeEEEeCC-CCHHHHHHHHHhCCEEEE---cCcccCCCChHHHHHHHCCCCEEECCCCCHHHHhcCCC
Confidence 444333 33 69999998 999999999999999999 464 7999999999999999999999999999999999
Q ss_pred cEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 409 NGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 409 ~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
+|++++ |+++++++|..++++ ++.++++++++++..
T Consensus 307 ~g~~~~~~d~~~l~~~i~~l~~~----~~~~~~~~~~~~~~~ 344 (359)
T cd03823 307 NGLLFPPGDAEDLAAALERLIDD----PDLLERLRAGIEPPR 344 (359)
T ss_pred cEEEECCCCHHHHHHHHHHHHhC----hHHHHHHHHhHHHhh
Confidence 999996 589999999999984 888999999998854
No 54
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.97 E-value=2.6e-28 Score=259.66 Aligned_cols=281 Identities=13% Similarity=0.118 Sum_probs=207.0
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEE-ecCchhhhhhhccCCCchHHHHHHHHHH--HHhhhcCEEEEeCHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVD-WHNFGYTLLSLSLGRRSHFVSIYRWIEK--YYGKMANGCLCVTQA 176 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~h~~~~~~~~~~~~~~~~~~~~~~~~e~--~~~~~ad~vi~vS~~ 176 (474)
.+||+||+++. .+.+.+.+++++.+.|++++ .|.. +. ....+.+..-+..+.+ .+.+.+| +++.|..
T Consensus 279 ~rpDIVHt~~~---~a~l~g~laA~lagvpviv~~~h~~-~~-----~~~~r~~~~e~~~~~~a~~i~~~sd-~v~~s~~ 348 (578)
T PRK15490 279 RKLDYLSVWQD---GACLMIALAALIAGVPRIQLGLRGL-PP-----VVRKRLFKPEYEPLYQALAVVPGVD-FMSNNHC 348 (578)
T ss_pred cCCCEEEEcCc---ccHHHHHHHHHhcCCCEEEEeeccc-CC-----cchhhHHHHHHHHhhhhceeEecch-hhhccHH
Confidence 89999999993 33345778888889999775 5543 11 1111111111111111 2234455 7788998
Q ss_pred HHHHHHHHhCCc---eEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccccccc
Q 011969 177 MQHELAQNWGIK---ATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDV 252 (474)
Q Consensus 177 ~~~~l~~~~~~~---~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (474)
+++.+.+.++.+ +.+||||.+ ..|.+.... ....+.++..
T Consensus 349 v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~-~~~~r~~~~~----------------------------------- 392 (578)
T PRK15490 349 VTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEV-PHKIWQQFTQ----------------------------------- 392 (578)
T ss_pred HHHHHHHHhCCCHHHEEEEeCCcchhhcCccchh-hHHHHHHhhh-----------------------------------
Confidence 888888776654 899999944 566664321 1122222220
Q ss_pred ccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHH
Q 011969 253 FLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 332 (474)
Q Consensus 253 ~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~ 332 (474)
.++++. .+++++|++.+.||+..+++++..+.++ .|+++|+|+|+|+..+++
T Consensus 393 ~l~~~~-~vIg~VgRl~~~Kg~~~LI~A~a~llk~---------------------------~pdirLvIVGdG~~~eeL 444 (578)
T PRK15490 393 KTQDAD-TTIGGVFRFVGDKNPFAWIDFAARYLQH---------------------------HPATRFVLVGDGDLRAEA 444 (578)
T ss_pred ccCCCC-cEEEEEEEEehhcCHHHHHHHHHHHHhH---------------------------CCCeEEEEEeCchhHHHH
Confidence 011223 3889999999999999999999887663 589999999999999999
Q ss_pred HHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEE
Q 011969 333 EEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGL 411 (474)
Q Consensus 333 ~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~ 411 (474)
++.++++++ ++|.|+|. .+|+..+|+.||++|+ ||..|+||++++||||||+|||+++.++..|+|.++.+|+
T Consensus 445 k~la~elgL~d~V~FlG~---~~Dv~~~LaaADVfVl---PS~~EGfp~vlLEAMA~GlPVVATdvGG~~EiV~dG~nG~ 518 (578)
T PRK15490 445 QKRAEQLGILERILFVGA---SRDVGYWLQKMNVFIL---FSRYEGLPNVLIEAQMVGVPVISTPAGGSAECFIEGVSGF 518 (578)
T ss_pred HHHHHHcCCCCcEEECCC---hhhHHHHHHhCCEEEE---cccccCccHHHHHHHHhCCCEEEeCCCCcHHHcccCCcEE
Confidence 999999999 79999998 6899999999999999 6888999999999999999999999999999999999999
Q ss_pred EeC--CHHHHHHHHH---HHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHHHHH
Q 011969 412 LFS--SSSELADQLL---MLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHAKPL 464 (474)
Q Consensus 412 l~~--~~~~la~~i~---~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~ 464 (474)
+++ |++++++++. .+.+. ......|++++++.+ ..++|+...+++.+-+
T Consensus 519 LVp~~D~~aLa~ai~lA~aL~~l----l~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~ 573 (578)
T PRK15490 519 ILDDAQTVNLDQACRYAEKLVNL----WRSRTGICQQTQSFLQERFTVEHMVGTFVKTI 573 (578)
T ss_pred EECCCChhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 996 5777777763 33332 344556888888865 5688888777766554
No 55
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.97 E-value=2.3e-28 Score=251.13 Aligned_cols=242 Identities=16% Similarity=0.206 Sum_probs=182.8
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCc--EEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSA--FIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAM 177 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~ 177 (474)
.+||+||++++. ....+.++++..+.| ++.+.|... .... .. ... ..+.+|.++++|+.+
T Consensus 83 ~~~Dii~~~~~~---~~~~~~~~~~~~~~~~~~~~~~h~~~--------~~~~-~~----~~~--~~~~~d~~i~~S~~~ 144 (359)
T PRK09922 83 TQPDIVICIDVI---SCLYANKARKKSGKQFKIFSWPHFSL--------DHKK-HA----ECK--KITCADYHLAISSGI 144 (359)
T ss_pred cCCCEEEEcCHH---HHHHHHHHHHHhCCCCeEEEEecCcc--------cccc-hh----hhh--hhhcCCEEEEcCHHH
Confidence 789999999842 223455555555544 444555431 1111 10 111 126899999999999
Q ss_pred HHHHHHHhCCc---eEEEeCCCC-CCCC-CCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccccccc
Q 011969 178 QHELAQNWGIK---ATVLYDQPP-EFFH-PTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDV 252 (474)
Q Consensus 178 ~~~l~~~~~~~---~~vi~n~~~-~~f~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (474)
++.+.+. +.+ +.++||+.+ +.+. +.+
T Consensus 145 ~~~~~~~-~~~~~ki~vi~N~id~~~~~~~~~------------------------------------------------ 175 (359)
T PRK09922 145 KEQMMAR-GISAQRISVIYNPVEIKTIIIPPP------------------------------------------------ 175 (359)
T ss_pred HHHHHHc-CCCHHHEEEEcCCCCHHHccCCCc------------------------------------------------
Confidence 9998764 543 889999854 2221 110
Q ss_pred ccCCCCCeEEEEEeecc--cCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChH
Q 011969 253 FLKPNRPALVVSSTSWT--PDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKE 330 (474)
Q Consensus 253 ~~~~~~~~~i~~~G~l~--~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~ 330 (474)
..+.+..++|+|++. +.||++.+++++..+ .++++|+|+|+|++.+
T Consensus 176 --~~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~------------------------------~~~~~l~ivG~g~~~~ 223 (359)
T PRK09922 176 --ERDKPAVFLYVGRLKFEGQKNVKELFDGLSQT------------------------------TGEWQLHIIGDGSDFE 223 (359)
T ss_pred --ccCCCcEEEEEEEEecccCcCHHHHHHHHHhh------------------------------CCCeEEEEEeCCccHH
Confidence 011233899999986 459999999999875 2479999999999999
Q ss_pred HHHHHHHHcCC-CcEEEecCCCC--cccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec-cccccccccc
Q 011969 331 SYEEKIRRLRL-KRVAFRTMWLS--AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCIEELVKV 406 (474)
Q Consensus 331 ~~~~~~~~l~l-~~V~f~g~~v~--~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~-~~~~~e~v~~ 406 (474)
++++.++++++ ++|.|.|. ++ .+++..+|..||++|+ +|..|+||++++||||||+|||+++ .++..|++.+
T Consensus 224 ~l~~~~~~~~l~~~v~f~G~-~~~~~~~~~~~~~~~d~~v~---~s~~Egf~~~~lEAma~G~Pvv~s~~~~g~~eiv~~ 299 (359)
T PRK09922 224 KCKAYSRELGIEQRIIWHGW-QSQPWEVVQQKIKNVSALLL---TSKFEGFPMTLLEAMSYGIPCISSDCMSGPRDIIKP 299 (359)
T ss_pred HHHHHHHHcCCCCeEEEecc-cCCcHHHHHHHHhcCcEEEE---CCcccCcChHHHHHHHcCCCEEEeCCCCChHHHccC
Confidence 99999999998 69999997 64 4788999999999999 6888999999999999999999999 8999999999
Q ss_pred CCcEEEeC--CHHHHHHHHHHHHhCCCCCHH--HHHHHHHHHHHhc
Q 011969 407 DKNGLLFS--SSSELADQLLMLFKGFPDDSD--VLKKLRNGTLEMG 448 (474)
Q Consensus 407 ~~~G~l~~--~~~~la~~i~~l~~~~~~~~~--~~~~~~~~~~~~~ 448 (474)
+.+|++++ |+++++++|..++++ ++ ..+.++++++++.
T Consensus 300 ~~~G~lv~~~d~~~la~~i~~l~~~----~~~~~~~~~~~~~~~~~ 341 (359)
T PRK09922 300 GLNGELYTPGNIDEFVGKLNKVISG----EVKYQHDAIPNSIERFY 341 (359)
T ss_pred CCceEEECCCCHHHHHHHHHHHHhC----cccCCHHHHHHHHHHhh
Confidence 99999985 799999999999996 33 3455566666544
No 56
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.97 E-value=2.5e-28 Score=254.18 Aligned_cols=346 Identities=15% Similarity=0.119 Sum_probs=223.8
Q ss_pred CCCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceec-----cCCeEEEEeecCCCCCCCC----CchhHHHHHHHHHH
Q 011969 15 LGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILE-----HPSIHIHTMTQWPTIPRGL----PKVLKPVLLLLKPL 85 (474)
Q Consensus 15 ~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~-----~~gi~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 85 (474)
-|+.-|+.+.+..|++. |+|++++........+... .+.+.+...+......+.. ...+...... .-
T Consensus 14 ~G~~~r~~~~~~~L~~~--~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~--~~ 89 (397)
T TIGR03087 14 KGDKIRSFHLLRHLAAR--HRVHLGTFVDDPEDWQYAAALRPLCEEVCVVPLDPRVARLRSLLGLLTGEPLSLPYY--RS 89 (397)
T ss_pred CCCcEeHHHHHHHHHhc--CcEEEEEeCCCcccHHHHHHHHHHhheeEEeecCcHHHHHHHHhhhcCCCCCcchhh--CC
Confidence 47778999999999885 9999999764322111100 2233332222000000000 0000000000 00
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHH-hhCCCcEEEEecCchhhhhhhcc----CCCchHH----HHH
Q 011969 86 IQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWAS-SLRRSAFIVDWHNFGYTLLSLSL----GRRSHFV----SIY 156 (474)
Q Consensus 86 ~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~h~~~~~~~~~~~----~~~~~~~----~~~ 156 (474)
.++...+..++. ..++|+||++++... ..+. +..+.|+|++.||.......... ...+.+. +.+
T Consensus 90 ~~~~~~l~~~~~-~~~~D~v~~~~~~~~------~~~~~~~~~~p~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (397)
T TIGR03087 90 RRLARWVNALLA-AEPVDAIVVFSSAMA------QYVTPHVRGVPRIVDFVDVDSDKWLQYARTKRWPLRWIYRREGRLL 162 (397)
T ss_pred HHHHHHHHHHHh-hCCCCEEEEeccccc------eeccccccCCCeEeehhhHHHHHHHHHHhccCcchhHHHHHHHHHH
Confidence 111112223332 278999999984322 2222 35678999999986421111111 1111111 234
Q ss_pred HHHHHHHhhhcCEEEEeCHHHHHHHHHHhC---CceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCcccccccc
Q 011969 157 RWIEKYYGKMANGCLCVTQAMQHELAQNWG---IKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNA 232 (474)
Q Consensus 157 ~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~---~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 232 (474)
..+|+.+.+.+|.++++|+..++.+.+..+ .++.+++||.+ +.|.+..... +
T Consensus 163 ~~~e~~~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~~--------~---------------- 218 (397)
T TIGR03087 163 LAYERAIAARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDYP--------N---------------- 218 (397)
T ss_pred HHHHHHHHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCcccc--------C----------------
Confidence 568999999999999999999999887543 34889999954 5554432100 0
Q ss_pred ccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHH----HHhHHHHhhhhccCCCchhhHhHhhhc
Q 011969 233 GMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAA----LMYDRRVAAILNEDDSTNEEVFLKEIS 308 (474)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~----~~l~~~~~~~~~~~~~~~~~~~~~~~~ 308 (474)
...++.+ .++|+|++.+.||++.++.++ ..+.++
T Consensus 219 --------------------~~~~~~~-~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~--------------------- 256 (397)
T TIGR03087 219 --------------------PYPPGKR-VLVFTGAMDYWPNIDAVVWFAERVFPAVRAR--------------------- 256 (397)
T ss_pred --------------------CCCCCCc-EEEEEEecCCccCHHHHHHHHHHHHHHHHHH---------------------
Confidence 0112233 899999999999999988544 444432
Q ss_pred CCccccCCCEEEEEEeCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCC-CCCCCchHHHHHH
Q 011969 309 DGKQYLYPRLLFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPMKVVDMF 386 (474)
Q Consensus 309 ~~~~~~~~~~~l~ivG~g~~~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s-~~e~~p~kv~Eam 386 (474)
.|+++|+|+|+|+.. + +++++. ++|.|+|. ++ ++..+|+.||++|+| + .++|+|+|++|||
T Consensus 257 ------~p~~~l~ivG~g~~~-~----~~~l~~~~~V~~~G~-v~--~~~~~~~~adv~v~P---s~~~eG~~~~~lEAm 319 (397)
T TIGR03087 257 ------RPAAEFYIVGAKPSP-A----VRALAALPGVTVTGS-VA--DVRPYLAHAAVAVAP---LRIARGIQNKVLEAM 319 (397)
T ss_pred ------CCCcEEEEECCCChH-H----HHHhccCCCeEEeee-cC--CHHHHHHhCCEEEec---ccccCCcccHHHHHH
Confidence 689999999999853 2 334443 68999998 64 799999999999995 5 4689999999999
Q ss_pred hcCCcEEEecccccccccccCCcEEEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHH
Q 011969 387 GCGLPVCAVSYSCIEELVKVDKNGLLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEE 459 (474)
Q Consensus 387 a~G~PVia~~~~~~~e~v~~~~~G~l~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~ 459 (474)
|||+|||+|+.++ ..+...+++|+++. |+++++++|.+++++ ++.+++|++++++.+ +.++|+...++
T Consensus 320 a~G~PVV~t~~~~-~~i~~~~~~g~lv~~~~~~la~ai~~ll~~----~~~~~~~~~~ar~~v~~~fsw~~~~~~ 389 (397)
T TIGR03087 320 AMAKPVVASPEAA-EGIDALPGAELLVAADPADFAAAILALLAN----PAEREELGQAARRRVLQHYHWPRNLAR 389 (397)
T ss_pred HcCCCEEecCccc-ccccccCCcceEeCCCHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999998653 33344556788875 899999999999984 888999999999876 57888876655
No 57
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.97 E-value=2.4e-28 Score=248.71 Aligned_cols=250 Identities=16% Similarity=0.155 Sum_probs=188.2
Q ss_pred cCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchh---h---hhhhccCC-C----chHHHHHHHHHHHHhhhc
Q 011969 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGY---T---LLSLSLGR-R----SHFVSIYRWIEKYYGKMA 167 (474)
Q Consensus 99 ~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~---~---~~~~~~~~-~----~~~~~~~~~~e~~~~~~a 167 (474)
..++|+|+++++... . .+....+.|.+.++|.... . ......+. . ..+...++.+++...+.+
T Consensus 81 ~~~~D~v~~~~~~~~--~----~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (351)
T cd03804 81 LSGYDLVISSSHAVA--K----GVITRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWDRRSAARV 154 (351)
T ss_pred ccCCCEEEEcCcHHh--c----cccCCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHHHHHhcCC
Confidence 378999998773211 1 1114567888888886421 0 00001111 1 112344566777788999
Q ss_pred CEEEEeCHHHHHHHHHHhCCceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhc
Q 011969 168 NGCLCVTQAMQHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTS 246 (474)
Q Consensus 168 d~vi~vS~~~~~~l~~~~~~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (474)
|.++++|+.+++.+.+.++.+..+++|+.+ +.|.+..
T Consensus 155 d~ii~~S~~~~~~~~~~~~~~~~vi~~~~d~~~~~~~~------------------------------------------ 192 (351)
T cd03804 155 DYFIANSRFVARRIKKYYGRDATVIYPPVDTDRFTPAE------------------------------------------ 192 (351)
T ss_pred CEEEECCHHHHHHHHHHhCCCcEEECCCCCHhhcCcCC------------------------------------------
Confidence 999999999999998877888889988743 3332221
Q ss_pred ccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCC
Q 011969 247 LAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG 326 (474)
Q Consensus 247 ~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g 326 (474)
...+ .++|+|++.+.||++.+++|+..+ + ++|+|+|+|
T Consensus 193 ---------~~~~-~il~~G~~~~~K~~~~li~a~~~~-------------------------------~-~~l~ivG~g 230 (351)
T cd03804 193 ---------EKED-YYLSVGRLVPYKRIDLAIEAFNKL-------------------------------G-KRLVVIGDG 230 (351)
T ss_pred ---------CCCC-EEEEEEcCccccChHHHHHHHHHC-------------------------------C-CcEEEEECC
Confidence 1122 689999999999999999999764 4 789999999
Q ss_pred CChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccccccccccc
Q 011969 327 PDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKV 406 (474)
Q Consensus 327 ~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~ 406 (474)
++.+++++ ...++|.|.|. ++.+++..+|+.||++++ |+. |++|++++||||||+|||+++.++..|++.+
T Consensus 231 ~~~~~l~~----~~~~~V~~~g~-~~~~~~~~~~~~ad~~v~---ps~-e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~ 301 (351)
T cd03804 231 PELDRLRA----KAGPNVTFLGR-VSDEELRDLYARARAFLF---PAE-EDFGIVPVEAMASGTPVIAYGKGGALETVID 301 (351)
T ss_pred hhHHHHHh----hcCCCEEEecC-CCHHHHHHHHHhCCEEEE---CCc-CCCCchHHHHHHcCCCEEEeCCCCCcceeeC
Confidence 87766655 22279999998 999999999999999999 567 9999999999999999999999999999999
Q ss_pred CCcEEEeC--CHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHhccccchHH
Q 011969 407 DKNGLLFS--SSSELADQLLMLFKGFPDDS-DVLKKLRNGTLEMGLSARWAT 455 (474)
Q Consensus 407 ~~~G~l~~--~~~~la~~i~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~w~~ 455 (474)
+.+|++++ |+++++++|..++++ + ...+++++++. +++|+.
T Consensus 302 ~~~G~~~~~~~~~~la~~i~~l~~~----~~~~~~~~~~~~~----~~~~~~ 345 (351)
T cd03804 302 GVTGILFEEQTVESLAAAVERFEKN----EDFDPQAIRAHAE----RFSESR 345 (351)
T ss_pred CCCEEEeCCCCHHHHHHHHHHHHhC----cccCHHHHHHHHH----hcCHHH
Confidence 99999985 699999999999986 3 44566666664 455554
No 58
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.97 E-value=1.2e-27 Score=241.87 Aligned_cols=325 Identities=16% Similarity=0.169 Sum_probs=224.7
Q ss_pred ceEEEEEeCCCCCCchHH-HHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHH
Q 011969 5 GRACVVVLGDLGRSPRMQ-YQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLK 83 (474)
Q Consensus 5 ~~~~i~~~~~~g~~~r~~-~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (474)
|++.+......||..+.. ..+..|.+. ||+|++++.... .+.+
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~-G~~v~v~~~~~~-----------------------------------~~~~ 45 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAA-GVDSTMLVQEKK-----------------------------------ALIS 45 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhc-CCceeEEEeecc-----------------------------------hhhh
Confidence 344443333347766655 455677775 999999997643 0000
Q ss_pred HHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhh-CCCcEEEEecCchhhhhhhcc----------------
Q 011969 84 PLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSL-RRSAFIVDWHNFGYTLLSLSL---------------- 146 (474)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~h~~~~~~~~~~~---------------- 146 (474)
.+ +..+||+||+|.+...... ...+.++ +++|+|+++|+++........
T Consensus 46 ~~------------~~~~~diih~~~~~~~~~~--~~~~~~~~~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (365)
T cd03825 46 KI------------EIINADIVHLHWIHGGFLS--IEDLSKLLDRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQ 111 (365)
T ss_pred Ch------------hcccCCEEEEEccccCccC--HHHHHHHHcCCCEEEEcccCcccccccCCccccccccccCCCCCC
Confidence 01 2278999999885433211 2223333 589999999987421110000
Q ss_pred -CCC---chHHHHHHHHHHHHhhhcCEEEEeCHHHHHHHHHHhC---CceEEEeCCCC-CCCCCCChHHHHHHHHhhhhc
Q 011969 147 -GRR---SHFVSIYRWIEKYYGKMANGCLCVTQAMQHELAQNWG---IKATVLYDQPP-EFFHPTSLEEKHELFCRLNKI 218 (474)
Q Consensus 147 -~~~---~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~---~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~ 218 (474)
... .......+...+.+...++.++++|+.+++.+.+.+. .++.+++|+.+ +.|.+... ...+..++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~---~~~~~~~~-- 186 (365)
T cd03825 112 LGSYPEKDLSRWIWRRKRKAWADLNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRPRDK---REARKRLG-- 186 (365)
T ss_pred CCCCCcccHHHHHHHHHHHHhccCCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCCCcH---HHHHHHhC--
Confidence 000 0112333333344445678999999999988887642 45899999954 55545432 22333333
Q ss_pred cCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeeccc--CCCHHHHHHHHHHhHHHHhhhhccCC
Q 011969 219 LHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTP--DEDFGILLEAALMYDRRVAAILNEDD 296 (474)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~--~k~~~~Li~a~~~l~~~~~~~~~~~~ 296 (474)
++++.. +++++|+... .||++.+++++..+.++
T Consensus 187 -----------------------------------~~~~~~-~i~~~~~~~~~~~K~~~~ll~a~~~l~~~--------- 221 (365)
T cd03825 187 -----------------------------------LPADKK-IILFGAVGGTDPRKGFDELIEALKRLAER--------- 221 (365)
T ss_pred -----------------------------------CCCCCe-EEEEEecCCCccccCHHHHHHHHHHhhhc---------
Confidence 223333 6666666655 89999999999988651
Q ss_pred CchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHHHHHcCC-CcEEEecCCCC-cccHHHHHhcccEEEeeccCCC
Q 011969 297 STNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLS-AEDYPLLLGSADLGVCLHTSSS 374 (474)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~~~l~l-~~V~f~g~~v~-~~~~~~~l~~adv~v~~~~~s~ 374 (474)
..++++++++|.++..... +. .+|.|+|. ++ .+++..+|+.||++++ ||.
T Consensus 222 -----------------~~~~~~~~i~G~~~~~~~~-------~~~~~v~~~g~-~~~~~~~~~~~~~ad~~l~---ps~ 273 (365)
T cd03825 222 -----------------WKDDIELVVFGASDPEIPP-------DLPFPVHYLGS-LNDDESLALIYSAADVFVV---PSL 273 (365)
T ss_pred -----------------cCCCeEEEEeCCCchhhhc-------cCCCceEecCC-cCCHHHHHHHHHhCCEEEe---ccc
Confidence 2478999999988754321 33 58999998 77 7899999999999999 687
Q ss_pred CCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-ccc
Q 011969 375 GLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSA 451 (474)
Q Consensus 375 ~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~ 451 (474)
.|++|.+++|||+||+|||+++.+++.|++.++.+|++++ |+++++++|.+++++ ++.++++++++++.. +.+
T Consensus 274 ~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~~~----~~~~~~~~~~~~~~~~~~~ 349 (365)
T cd03825 274 QENFPNTAIEALACGTPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLLAD----PDEREELGEAARELAENEF 349 (365)
T ss_pred cccccHHHHHHHhcCCCEEEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999988999986 799999999999984 788899999998866 467
Q ss_pred chHHHHHHHH
Q 011969 452 RWATEWEEHA 461 (474)
Q Consensus 452 ~w~~~~~~~~ 461 (474)
+|+...++..
T Consensus 350 s~~~~~~~~~ 359 (365)
T cd03825 350 DSRVQAKRYL 359 (365)
T ss_pred CHHHHHHHHH
Confidence 7776655533
No 59
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.97 E-value=8.8e-28 Score=257.67 Aligned_cols=270 Identities=13% Similarity=0.214 Sum_probs=206.1
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCch-HHHHHHHHHHHHhhhcCEEEEeCHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSH-FVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (474)
.++|++|+..++.... .++.....+|+++.+|+-.+... ....... +...+.+. ....+.+|.+|++|+..+
T Consensus 210 ~~~di~i~dr~~~~~~----~~~~~~~~~~~v~~lH~~h~~~~--~~~~~~~~~~~~y~~~-~~~~~~~D~iI~~S~~~~ 282 (500)
T TIGR02918 210 TKKDIIILDRSTGIGQ----AVLENKGPAKLGVVVHAEHFSES--ATNETYILWNNYYEYQ-FSNADYIDFFITATDIQN 282 (500)
T ss_pred CCCCEEEEcCCcccch----HHHhcCCCceEEEEEChhhhcCc--cCcchhHHHHHHHHHH-HhchhhCCEEEECCHHHH
Confidence 6899999988654221 12344557899999997532111 0111111 11222221 122457899999999998
Q ss_pred HHHHHHhC------CceEEEeCCCCC-CCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccc
Q 011969 179 HELAQNWG------IKATVLYDQPPE-FFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGID 251 (474)
Q Consensus 179 ~~l~~~~~------~~~~vi~n~~~~-~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (474)
+.+.+.++ .++.++|+|..+ .+.+.
T Consensus 283 ~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~------------------------------------------------ 314 (500)
T TIGR02918 283 QILKNQFKKYYNIEPRIYTIPVGSLDELQYPE------------------------------------------------ 314 (500)
T ss_pred HHHHHHhhhhcCCCCcEEEEcCCCcccccCcc------------------------------------------------
Confidence 88876553 237889988432 22111
Q ss_pred cccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHH
Q 011969 252 VFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKES 331 (474)
Q Consensus 252 ~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~ 331 (474)
....+..++++||+.+.||++.|++|+..+.+. .|+++|.|+|+|++.+.
T Consensus 315 ---~~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~---------------------------~p~~~l~i~G~G~~~~~ 364 (500)
T TIGR02918 315 ---QERKPFSIITASRLAKEKHIDWLVKAVVKAKKS---------------------------VPELTFDIYGEGGEKQK 364 (500)
T ss_pred ---cccCCeEEEEEeccccccCHHHHHHHHHHHHhh---------------------------CCCeEEEEEECchhHHH
Confidence 012234799999999999999999999998773 78999999999999999
Q ss_pred HHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc-ccccccccCCc
Q 011969 332 YEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS-CIEELVKVDKN 409 (474)
Q Consensus 332 ~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~-~~~e~v~~~~~ 409 (474)
+++.++++++ ++|.|.|. .++..+|+.||++|+ ||..|+||++++||||||+|||+++.+ |.+|+|.++.+
T Consensus 365 l~~~i~~~~l~~~V~f~G~----~~~~~~~~~adv~v~---pS~~Egfgl~~lEAma~G~PVI~~dv~~G~~eiI~~g~n 437 (500)
T TIGR02918 365 LQKIINENQAQDYIHLKGH----RNLSEVYKDYELYLS---ASTSEGFGLTLMEAVGSGLGMIGFDVNYGNPTFIEDNKN 437 (500)
T ss_pred HHHHHHHcCCCCeEEEcCC----CCHHHHHHhCCEEEE---cCccccccHHHHHHHHhCCCEEEecCCCCCHHHccCCCC
Confidence 9999999998 78999996 378899999999999 788999999999999999999999985 89999999999
Q ss_pred EEEeC-C---------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Q 011969 410 GLLFS-S---------SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITE 467 (474)
Q Consensus 410 G~l~~-~---------~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 467 (474)
|++++ + +++|+++|..+++ ++.+++|++++++.+++++|+..|++.. .++++
T Consensus 438 G~lv~~~~~~~d~~~~~~~la~~I~~ll~-----~~~~~~~~~~a~~~a~~fs~~~v~~~w~-~ll~~ 499 (500)
T TIGR02918 438 GYLIPIDEEEDDEDQIITALAEKIVEYFN-----SNDIDAFHEYSYQIAEGFLTANIIEKWK-KLVRE 499 (500)
T ss_pred EEEEeCCccccchhHHHHHHHHHHHHHhC-----hHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHHhh
Confidence 99986 1 7889999999985 3468999999999888999998886644 45544
No 60
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.96 E-value=1.2e-27 Score=250.58 Aligned_cols=266 Identities=18% Similarity=0.204 Sum_probs=203.6
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCC-CcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRR-SAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (474)
.++|++|.+-. ..+......+++..+ .++|.+.|+..... ... ...+..+.+.+.+.+|.++++|+..+
T Consensus 126 ~~~~v~~sy~~--~~~~~~~~~l~~~~~~~~~i~~~Hg~d~~~-----~~~---~~~~~~~~~~~~~~~d~ii~~S~~~~ 195 (407)
T cd04946 126 GQGTVFYSYWL--HETAYALALLKKEYLRKRVISRAHGYDLYE-----DRY---PSGYIPLRRYLLSSLDAVFPCSEQGR 195 (407)
T ss_pred cCceEEEEecC--chHHHHHHHHHHhcCCceEEEEeccchhhh-----hhc---cccchHHHHHHHhcCCEEEECCHHHH
Confidence 45566666542 233333333344333 45999999763100 000 01112445556789999999999999
Q ss_pred HHHHHHhCCc---eEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccccccccc
Q 011969 179 HELAQNWGIK---ATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFL 254 (474)
Q Consensus 179 ~~l~~~~~~~---~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (474)
+++.+.++.. +.++++|.+ ..+.+. .
T Consensus 196 ~~l~~~~~~~~~ki~vi~~gv~~~~~~~~--------------------------------------------------~ 225 (407)
T cd04946 196 NYLQKRYPAYKEKIKVSYLGVSDPGIISK--------------------------------------------------P 225 (407)
T ss_pred HHHHHHCCCccccEEEEECCcccccccCC--------------------------------------------------C
Confidence 9999887653 678888844 222111 0
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCC--CEEEEEEeCCCChHHH
Q 011969 255 KPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYP--RLLFIITGKGPDKESY 332 (474)
Q Consensus 255 ~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ivG~g~~~~~~ 332 (474)
..+.+..++++|++.+.||++.+++|+..+.++ .| +++++++|+|+..+.+
T Consensus 226 ~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~---------------------------~p~~~l~~~iiG~g~~~~~l 278 (407)
T cd04946 226 SKDDTLRIVSCSYLVPVKRVDLIIKALAALAKA---------------------------RPSIKIKWTHIGGGPLEDTL 278 (407)
T ss_pred CCCCCEEEEEeeccccccCHHHHHHHHHHHHHh---------------------------CCCceEEEEEEeCchHHHHH
Confidence 022345899999999999999999999998773 44 5778999999999999
Q ss_pred HHHHHHcCC-CcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCc
Q 011969 333 EEKIRRLRL-KRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKN 409 (474)
Q Consensus 333 ~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~ 409 (474)
++.+++++. ++|.|+|. ++.+++..+|+. +|++++ +|..|++|++++||||||+|||+++.++..|++.++.+
T Consensus 279 ~~~~~~~~~~~~V~f~G~-v~~~e~~~~~~~~~~~v~v~---~S~~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~~~~ 354 (407)
T cd04946 279 KELAESKPENISVNFTGE-LSNSEVYKLYKENPVDVFVN---LSESEGLPVSIMEAMSFGIPVIATNVGGTPEIVDNGGN 354 (407)
T ss_pred HHHHHhcCCCceEEEecC-CChHHHHHHHhhcCCCEEEe---CCccccccHHHHHHHHcCCCEEeCCCCCcHHHhcCCCc
Confidence 999988777 68999998 999999999986 678888 78899999999999999999999999999999999999
Q ss_pred EEEeC---CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHH
Q 011969 410 GLLFS---SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEH 460 (474)
Q Consensus 410 G~l~~---~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~ 460 (474)
|++++ |+++++++|.++++ |++.+++|++++++.. ++++|+....+.
T Consensus 355 G~l~~~~~~~~~la~~I~~ll~----~~~~~~~m~~~ar~~~~~~f~~~~~~~~~ 405 (407)
T cd04946 355 GLLLSKDPTPNELVSSLSKFID----NEEEYQTMREKAREKWEENFNASKNYREF 405 (407)
T ss_pred EEEeCCCCCHHHHHHHHHHHHh----CHHHHHHHHHHHHHHHHHHcCHHHhHHHh
Confidence 99984 58999999999998 4899999999999875 678887766554
No 61
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.96 E-value=1.3e-26 Score=242.96 Aligned_cols=350 Identities=12% Similarity=0.048 Sum_probs=213.0
Q ss_pred CceEEEEEeCCCCCCchHHHH-HHHHHhhCCCeEEEEecCCCCCCcceeccCCe-EEEEeecCCCCCCCCCchhHHHHHH
Q 011969 4 RGRACVVVLGDLGRSPRMQYQ-ALSLARQMSLEVDVVAYGGSKPHAAILEHPSI-HIHTMTQWPTIPRGLPKVLKPVLLL 81 (474)
Q Consensus 4 ~~~~~i~~~~~~g~~~r~~~~-a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi-~i~~~~~~~~~~~~~~~~~~~~~~~ 81 (474)
||++.|......|+++|+... +..+.++ ||+|+++...+..+.... ...++ ..+... ++....+...
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~-G~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~ 69 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQ-GLASHFVYGYGKGGKESV-SHQNYPQVIKHT---------PRMTAMANIA 69 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhc-CCeEEEEEecCCCccccc-ccCCcceEEEec---------ccHHHHHHHH
Confidence 467888877778999998765 4556665 999999997765443211 11122 112222 1111111111
Q ss_pred H------HHHHHHHHHHHHHhhhcCCCCEEEEeCCCChh-HH-HHHHH----HHhhCCCcEEEEecCchhh---------
Q 011969 82 L------KPLIQFFMLLWFLCVKIASPDVFLVQNPPSVP-TL-VAVKW----ASSLRRSAFIVDWHNFGYT--------- 140 (474)
Q Consensus 82 ~------~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~-~~-~~~~~----~~~~~~~~~i~~~h~~~~~--------- 140 (474)
. ..+.... -+..++.+..+|||||+|+..... .. .+..+ ..+..++|+|+|.||.|.-
T Consensus 70 ~~~~~~~~~~~~~~-~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~ 148 (405)
T PRK10125 70 LFRLFNRDLFGNFN-ELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDG 148 (405)
T ss_pred HHHhcchhhcchHH-HHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcc
Confidence 0 0000000 111122234799999999865321 11 11221 1123468999999998621
Q ss_pred --hhhhcc--------CCCchH---HHHH---HHHHHHHhhhcCEEEEeCHHHHHHHHHHhCC-ceEEEeCCCC-CCCCC
Q 011969 141 --LLSLSL--------GRRSHF---VSIY---RWIEKYYGKMANGCLCVTQAMQHELAQNWGI-KATVLYDQPP-EFFHP 202 (474)
Q Consensus 141 --~~~~~~--------~~~~~~---~~~~---~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~-~~~vi~n~~~-~~f~~ 202 (474)
...... .+...+ .+.+ +..-+...+.++.++++|+.+++.+.+.++. ++.+|+||.+ +.+.+
T Consensus 149 C~~~~~~c~~Cp~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~~~~i~vI~NGid~~~~~~ 228 (405)
T PRK10125 149 CEGWKTGCQKCPTLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIINNGIDMATEAI 228 (405)
T ss_pred cccccccCCCCCCccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcCCCCEEEeCCCcCcccccc
Confidence 000000 011111 1111 1222222345689999999999988776653 4899999955 21211
Q ss_pred CChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeec--ccCCCHHHHHHH
Q 011969 203 TSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSW--TPDEDFGILLEA 280 (474)
Q Consensus 203 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l--~~~k~~~~Li~a 280 (474)
.+. .... ...++.+ +++++|+. .+.||++.|++|
T Consensus 229 ~~~--~~~~-----------------------------------------~~~~~~~-~il~v~~~~~~~~Kg~~~li~A 264 (405)
T PRK10125 229 LAE--LPPV-----------------------------------------RETQGKP-KIAVVAHDLRYDGKTDQQLVRE 264 (405)
T ss_pred ccc--cccc-----------------------------------------ccCCCCC-EEEEEEeccccCCccHHHHHHH
Confidence 110 0000 0112333 78889984 477999999999
Q ss_pred HHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHH
Q 011969 281 ALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLL 360 (474)
Q Consensus 281 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l 360 (474)
+..+ .++++|+|+|+|+... .++|.++|..-+.+++..+|
T Consensus 265 ~~~l------------------------------~~~~~L~ivG~g~~~~----------~~~v~~~g~~~~~~~l~~~y 304 (405)
T PRK10125 265 MMAL------------------------------GDKIELHTFGKFSPFT----------AGNVVNHGFETDKRKLMSAL 304 (405)
T ss_pred HHhC------------------------------CCCeEEEEEcCCCccc----------ccceEEecCcCCHHHHHHHH
Confidence 9875 3579999999875421 14688888733568899999
Q ss_pred hcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHH
Q 011969 361 GSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLK 438 (474)
Q Consensus 361 ~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~ 438 (474)
+.||++|+ ||..|+||++++||||||+|||+|+.||++|++.++ +|++++ |+++|++.+.. +..+
T Consensus 305 ~~aDvfV~---pS~~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~~~-~G~lv~~~d~~~La~~~~~---------~~~~ 371 (405)
T PRK10125 305 NQMDALVF---SSRVDNYPLILCEALSIGVPVIATHSDAAREVLQKS-GGKTVSEEEVLQLAQLSKP---------EIAQ 371 (405)
T ss_pred HhCCEEEE---CCccccCcCHHHHHHHcCCCEEEeCCCChHHhEeCC-cEEEECCCCHHHHHhccCH---------HHHH
Confidence 99999999 788999999999999999999999999999999764 999996 79999985432 2222
Q ss_pred H-H---HHHHHHh-ccccchHHHHHHHHH
Q 011969 439 K-L---RNGTLEM-GLSARWATEWEEHAK 462 (474)
Q Consensus 439 ~-~---~~~~~~~-~~~~~w~~~~~~~~~ 462 (474)
+ + .+.+++. .+.++|+...+++.+
T Consensus 372 ~~~~~~~~~~r~~~~~~fs~~~~~~~y~~ 400 (405)
T PRK10125 372 AVFGTTLAEFSQRSRAAYSGQQMLEEYVN 400 (405)
T ss_pred HhhhhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2 1 1223332 246888777766543
No 62
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.96 E-value=2.4e-26 Score=247.35 Aligned_cols=246 Identities=12% Similarity=0.086 Sum_probs=179.4
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHH-HHHHHHHHHhhh-cCEEEEeCHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVS-IYRWIEKYYGKM-ANGCLCVTQAM 177 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~-ad~vi~vS~~~ 177 (474)
.+|||||+++|..+.....+...++..+ |+|..+|-.-..+... .....+.. +.+++.+++.+. ||.++++|..+
T Consensus 433 f~PDVVHLatP~~LGw~~~Glr~ArKl~-PVVasyHTny~eYl~~--y~~g~L~~~llk~l~~~v~r~hcD~VIaPS~at 509 (794)
T PLN02501 433 KDADIAILEEPEHLNWYHHGKRWTDKFN-HVVGVVHTNYLEYIKR--EKNGALQAFFVKHINNWVTRAYCHKVLRLSAAT 509 (794)
T ss_pred cCCCEEEECCchhhccHHHHHHHHHHcC-CeEEEEeCCcHHHHhH--hcchhHHHHHHHHHHHHHHHhhCCEEEcCCHHH
Confidence 7899999999865543311333344445 7888888652222211 12233333 233444444432 89999999888
Q ss_pred HHHHHHHhCCceEEEeCC-CCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCC
Q 011969 178 QHELAQNWGIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKP 256 (474)
Q Consensus 178 ~~~l~~~~~~~~~vi~n~-~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (474)
++ +.. ......+| ++++|+|..... .+.+++ ...
T Consensus 510 q~-L~~----~vI~nVnGVDte~F~P~~r~~---~~r~lg-------------------------------------i~~ 544 (794)
T PLN02501 510 QD-LPK----SVICNVHGVNPKFLKIGEKVA---EERELG-------------------------------------QQA 544 (794)
T ss_pred HH-hcc----cceeecccccccccCCcchhH---HHHhcC-------------------------------------Ccc
Confidence 83 321 21111257 457888764311 112233 111
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHHH
Q 011969 257 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKI 336 (474)
Q Consensus 257 ~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~ 336 (474)
. +..++|+|++.+.||++.|++|++.+.++ .|+++|+|+|+||+.+++++.+
T Consensus 545 ~-~kgiLfVGRLa~EKGld~LLeAla~L~~~---------------------------~pnvrLvIVGDGP~reeLe~la 596 (794)
T PLN02501 545 F-SKGAYFLGKMVWAKGYRELIDLLAKHKNE---------------------------LDGFNLDVFGNGEDAHEVQRAA 596 (794)
T ss_pred c-cCceEEEEcccccCCHHHHHHHHHHHHhh---------------------------CCCeEEEEEcCCccHHHHHHHH
Confidence 1 12578999999999999999999988763 5789999999999999999999
Q ss_pred HHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEeCCH
Q 011969 337 RRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSS 416 (474)
Q Consensus 337 ~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~~~ 416 (474)
+++++ +|.|+|+ .++...+|+.+|+||+ ||..|+||++++||||||+|||+++.++. +.+.++.+|++..|+
T Consensus 597 ~eLgL-~V~FLG~---~dd~~~lyasaDVFVl---PS~sEgFGlVlLEAMA~GlPVVATd~pG~-e~V~~g~nGll~~D~ 668 (794)
T PLN02501 597 KRLDL-NLNFLKG---RDHADDSLHGYKVFIN---PSISDVLCTATAEALAMGKFVVCADHPSN-EFFRSFPNCLTYKTS 668 (794)
T ss_pred HHcCC-EEEecCC---CCCHHHHHHhCCEEEE---CCCcccchHHHHHHHHcCCCEEEecCCCC-ceEeecCCeEecCCH
Confidence 99987 5999998 6777899999999999 78899999999999999999999999885 447788899998899
Q ss_pred HHHHHHHHHHHhC
Q 011969 417 SELADQLLMLFKG 429 (474)
Q Consensus 417 ~~la~~i~~l~~~ 429 (474)
++++++|.+++.+
T Consensus 669 EafAeAI~~LLsd 681 (794)
T PLN02501 669 EDFVAKVKEALAN 681 (794)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999986
No 63
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.96 E-value=1.6e-26 Score=236.84 Aligned_cols=267 Identities=18% Similarity=0.300 Sum_probs=207.2
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (474)
.++|+++++.+..... .+.......+.++.+|+....... ......+...++..... .+.+|.++++|+..++
T Consensus 98 ~~~diii~~~~~~~~~----~~~~~~~~~~~i~~~h~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~d~ii~~s~~~~~ 170 (372)
T cd04949 98 TKPDVFILDRPTLDGQ----ALLNMKKAAKVVVVLHSNHVSDNN--DPVHSLINNFYEYVFEN-LDKVDGVIVATEQQKQ 170 (372)
T ss_pred CCCCEEEECCccccch----hHHhccCCceEEEEEChHHhCCcc--cccccccchhhHHHHhC-hhhCCEEEEccHHHHH
Confidence 7899999988644332 123334456688899976321110 00011222323332222 4679999999999999
Q ss_pred HHHHHhCCc--eEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCC
Q 011969 180 ELAQNWGIK--ATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKP 256 (474)
Q Consensus 180 ~l~~~~~~~--~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (474)
.+.+.++.. +.++|++.. ..+.+.. ...
T Consensus 171 ~l~~~~~~~~~v~~ip~g~~~~~~~~~~-------------------------------------------------~~~ 201 (372)
T cd04949 171 DLQKQFGNYNPIYTIPVGSIDPLKLPAQ-------------------------------------------------FKQ 201 (372)
T ss_pred HHHHHhCCCCceEEEcccccChhhcccc-------------------------------------------------hhh
Confidence 998877653 788998854 2222210 001
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHHH
Q 011969 257 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKI 336 (474)
Q Consensus 257 ~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~ 336 (474)
..+..++++|++.+.||++.+++++..+.++ .|+++|+|+|.|+....+++.+
T Consensus 202 ~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~---------------------------~~~~~l~i~G~g~~~~~~~~~~ 254 (372)
T cd04949 202 RKPHKIITVARLAPEKQLDQLIKAFAKVVKQ---------------------------VPDATLDIYGYGDEEEKLKELI 254 (372)
T ss_pred cCCCeEEEEEccCcccCHHHHHHHHHHHHHh---------------------------CCCcEEEEEEeCchHHHHHHHH
Confidence 2233789999999999999999999998873 7899999999999888888888
Q ss_pred HHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc-ccccccccCCcEEEeC
Q 011969 337 RRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS-CIEELVKVDKNGLLFS 414 (474)
Q Consensus 337 ~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~-~~~e~v~~~~~G~l~~ 414 (474)
+++++ ++|.|.|. .+++..+|+.||++|+ +|..|++|++++|||+||+|||+++.+ +..+++.++.+|++++
T Consensus 255 ~~~~~~~~v~~~g~---~~~~~~~~~~ad~~v~---~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v~~~~~G~lv~ 328 (372)
T cd04949 255 EELGLEDYVFLKGY---TRDLDEVYQKAQLSLL---TSQSEGFGLSLMEALSHGLPVISYDVNYGPSEIIEDGENGYLVP 328 (372)
T ss_pred HHcCCcceEEEcCC---CCCHHHHHhhhhEEEe---cccccccChHHHHHHhCCCCEEEecCCCCcHHHcccCCCceEeC
Confidence 99988 68999986 7889999999999999 688899999999999999999999976 7899999999999997
Q ss_pred --CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHH
Q 011969 415 --SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEE 459 (474)
Q Consensus 415 --~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 459 (474)
|+++++++|..++++ ++.++++++++++.+.+++|+..|++
T Consensus 329 ~~d~~~la~~i~~ll~~----~~~~~~~~~~a~~~~~~~s~~~~~~~ 371 (372)
T cd04949 329 KGDIEALAEAIIELLND----PKLLQKFSEAAYENAERYSEENVWEK 371 (372)
T ss_pred CCcHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 899999999999995 88999999999988888888877653
No 64
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.94 E-value=1.9e-24 Score=223.72 Aligned_cols=357 Identities=16% Similarity=0.111 Sum_probs=215.8
Q ss_pred CCCCceEEEEEeCCCC-CCchHHHHHHHHHhhCCCeEEEEecCCC--CCCcceeccCCeEEEEeecC-CCCCCC--CCch
Q 011969 1 MGRRGRACVVVLGDLG-RSPRMQYQALSLARQMSLEVDVVAYGGS--KPHAAILEHPSIHIHTMTQW-PTIPRG--LPKV 74 (474)
Q Consensus 1 m~~~~~~~i~~~~~~g-~~~r~~~~a~~l~~~~g~eV~Vv~~~~~--~~~~~~~~~~gi~i~~~~~~-~~~~~~--~~~~ 74 (474)
|...+.++++...+|+ ...|-|..+..|+++ ||.|..|...+. .+. ....+..++..-... ...... ....
T Consensus 1 ~~~~~~~~~~~~~~w~~~~~~~qhl~~~~a~~-~~~vl~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (373)
T cd04950 1 MADRPDILVFSADDWDFLWQRPQHLAARLAER-GNRVLYVEPPGLSRTPQ--PRGRDWVRVVLRLRAALRRPRRLDPLIP 77 (373)
T ss_pred CCCCCeEEEecccCcCCCCCCHHHHHHHHHhC-CCeEEEEeCCCccCCCC--CCCcccEEeeecccccccCccccCcccc
Confidence 4455555555556676 467999999999976 999999987653 222 122333333221100 000000 0000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHH
Q 011969 75 LKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVS 154 (474)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~ 154 (474)
..........+... +.+.......+..+++.++ |... .++..+.+.++||+++|...... +....
T Consensus 78 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~-P~~~-----~~~~~~~~~~~Vyd~~D~~~~~~----~~~~~--- 142 (373)
T cd04950 78 ARRRRLLRLLLNAL--LFWAQLELGFGRPILWYYT-PYTL-----PVAALLQASLVVYDCVDDLSAFP----GGPPE--- 142 (373)
T ss_pred chhhhHHHHHHHHH--HHHHHHhcCCCCcEEEEeC-ccHH-----HHHhhcCCCeEEEEcccchhccC----CCCHH---
Confidence 11111111111110 1111111113344454444 3322 22333678899999998732111 11111
Q ss_pred HHHHHHHHHhhhcCEEEEeCHHHHHHHHHHhCCceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccc
Q 011969 155 IYRWIEKYYGKMANGCLCVTQAMQHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAG 233 (474)
Q Consensus 155 ~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 233 (474)
....|+.+.+.||.|+++|+.+++.+.+. +.++.+++||.+ +.|.+....... . ..+
T Consensus 143 -~~~~e~~~~~~ad~vi~~S~~l~~~~~~~-~~~i~~i~ngvd~~~f~~~~~~~~~-~-~~~------------------ 200 (373)
T cd04950 143 -LLEAERRLLKRADLVFTTSPSLYEAKRRL-NPNVVLVPNGVDYEHFAAARDPPPP-P-ADL------------------ 200 (373)
T ss_pred -HHHHHHHHHHhCCEEEECCHHHHHHHhhC-CCCEEEcccccCHHHhhcccccCCC-h-hHH------------------
Confidence 12778999999999999999999888764 667899999954 555443211000 0 000
Q ss_pred cCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccc
Q 011969 234 MEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQY 313 (474)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (474)
...+++ .++|+|++.+.++++.+.++++.
T Consensus 201 --------------------~~~~~~-~i~y~G~l~~~~d~~ll~~la~~------------------------------ 229 (373)
T cd04950 201 --------------------AALPRP-VIGYYGAIAEWLDLELLEALAKA------------------------------ 229 (373)
T ss_pred --------------------hcCCCC-EEEEEeccccccCHHHHHHHHHH------------------------------
Confidence 112334 89999999998888766554432
Q ss_pred cCCCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCC--CCCCCchHHHHHHhcCCc
Q 011969 314 LYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS--SGLDLPMKVVDMFGCGLP 391 (474)
Q Consensus 314 ~~~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s--~~e~~p~kv~Eama~G~P 391 (474)
.|+++|+|+|+|+...+. ....+.+||+|+|. ++.++++.+++.||++++|...+ ...++|+|++||||||+|
T Consensus 230 -~p~~~~vliG~~~~~~~~---~~~~~~~nV~~~G~-~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~P 304 (373)
T cd04950 230 -RPDWSFVLIGPVDVSIDP---SALLRLPNVHYLGP-KPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKP 304 (373)
T ss_pred -CCCCEEEEECCCcCccCh---hHhccCCCEEEeCC-CCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCC
Confidence 488999999988333222 22223479999998 99999999999999999976544 345789999999999999
Q ss_pred EEEecccccccccccCCcEEEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Q 011969 392 VCAVSYSCIEELVKVDKNGLLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAK 462 (474)
Q Consensus 392 Via~~~~~~~e~v~~~~~G~l~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 462 (474)
||+++.+.+ +.....+++.. |+++++++|..++... ++...++.++ ...+++|+...+++..
T Consensus 305 VVat~~~~~---~~~~~~~~~~~~d~~~~~~ai~~~l~~~--~~~~~~~~~~----~~~~~sW~~~a~~~~~ 367 (373)
T cd04950 305 VVATPLPEV---RRYEDEVVLIADDPEEFVAAIEKALLED--GPARERRRLR----LAAQNSWDARAAEMLE 367 (373)
T ss_pred EEecCcHHH---HhhcCcEEEeCCCHHHHHHHHHHHHhcC--CchHHHHHHH----HHHHCCHHHHHHHHHH
Confidence 999986544 44444455554 7999999999976641 2222222211 3447888887777653
No 65
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.94 E-value=5.7e-26 Score=225.57 Aligned_cols=333 Identities=16% Similarity=0.165 Sum_probs=228.7
Q ss_pred hHHHHHHHHHhhCCCeEEEEecC--CCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 011969 20 RMQYQALSLARQMSLEVDVVAYG--GSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCV 97 (474)
Q Consensus 20 r~~~~a~~l~~~~g~eV~Vv~~~--~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (474)
...+.+..|.+ +||.|.+++.. ...+. ...-.|++++.+|-.. ...-..++..+.. +.++.....
T Consensus 20 hiy~lSq~li~-lghkVvvithayg~r~gi--rylt~glkVyylp~~v--~~n~tT~ptv~~~--------~Pllr~i~l 86 (426)
T KOG1111|consen 20 HIYALSQCLIR-LGHKVVVITHAYGNRVGI--RYLTNGLKVYYLPAVV--GYNQTTFPTVFSD--------FPLLRPILL 86 (426)
T ss_pred hHHHhhcchhh-cCCeEEEEeccccCccce--eeecCCceEEEEeeee--eecccchhhhhcc--------Ccccchhhh
Confidence 34455567777 59999999954 32222 2223468888888321 1111112211111 111111222
Q ss_pred hcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHH
Q 011969 98 KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAM 177 (474)
Q Consensus 98 ~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~ 177 (474)
+ ++..++|.|++.+...- -+...++..|-+.+++=|.+ |. +..-+ ......+-+......|.+||+|..-
T Consensus 87 r-E~I~ivhghs~fS~lah-e~l~hartMGlktVfTdHSl-fG-----fad~~--si~~n~ll~~sL~~id~~IcVshts 156 (426)
T KOG1111|consen 87 R-ERIEIVHGHSPFSYLAH-EALMHARTMGLKTVFTDHSL-FG-----FADIG--SILTNKLLPLSLANIDRIICVSHTS 156 (426)
T ss_pred h-hceEEEecCChHHHHHH-HHHHHHHhcCceEEEecccc-cc-----ccchh--hhhhcceeeeeecCCCcEEEEeecC
Confidence 2 68999999986443322 24455667789999999986 21 11111 1111233334456789999999877
Q ss_pred HHHHH--HHh-CCceEEEeCC-CCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccc
Q 011969 178 QHELA--QNW-GIKATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVF 253 (474)
Q Consensus 178 ~~~l~--~~~-~~~~~vi~n~-~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (474)
++..- ... ..++.+|||. ..+.|.|.+..
T Consensus 157 kentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~----------------------------------------------- 189 (426)
T KOG1111|consen 157 KENTVLRGALAPAKVSVIPNAVVTHTFTPDAAD----------------------------------------------- 189 (426)
T ss_pred CCceEEEeccCHhHeeeccceeeccccccCccc-----------------------------------------------
Confidence 75421 111 2238999998 55778775321
Q ss_pred cCCCCC-eEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHH
Q 011969 254 LKPNRP-ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 332 (474)
Q Consensus 254 ~~~~~~-~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~ 332 (474)
+++++ ..++.++|+.++||+|.|++++..+.+ ++|+++|+|+|+||....+
T Consensus 190 -~~S~~i~~ivv~sRLvyrKGiDll~~iIp~vc~---------------------------~~p~vrfii~GDGPk~i~l 241 (426)
T KOG1111|consen 190 -KPSADIITIVVASRLVYRKGIDLLLEIIPSVCD---------------------------KHPEVRFIIIGDGPKRIDL 241 (426)
T ss_pred -cCCCCeeEEEEEeeeeeccchHHHHHHHHHHHh---------------------------cCCCeeEEEecCCcccchH
Confidence 12222 588999999999999999999999998 4899999999999999999
Q ss_pred HHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEE
Q 011969 333 EEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGL 411 (474)
Q Consensus 333 ~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~ 411 (474)
++..+++.+ ++|.++|. ++++++.+.|.+-|+|+. +|-.|.|+++++||++||+|||++..||++|++-++ .-+
T Consensus 242 ee~lEk~~l~~rV~~lG~-v~h~~Vr~vl~~G~IFln---tSlTEafc~~ivEAaScGL~VVsTrVGGIpeVLP~d-~i~ 316 (426)
T KOG1111|consen 242 EEMLEKLFLQDRVVMLGT-VPHDRVRDVLVRGDIFLN---TSLTEAFCMVIVEAASCGLPVVSTRVGGIPEVLPED-MIT 316 (426)
T ss_pred HHHHHHhhccCceEEecc-cchHHHHHHHhcCcEEec---cHHHHHHHHHHHHHHhCCCEEEEeecCCccccCCcc-cee
Confidence 999999999 89999999 999999999999999999 799999999999999999999999999999998655 222
Q ss_pred EeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHH
Q 011969 412 LFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHA 461 (474)
Q Consensus 412 l~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 461 (474)
+.. +++++++++++.+......|+ .+-++..+ .|+|..-.++.-
T Consensus 317 ~~~~~~~dl~~~v~~ai~~~~~~p~---~~h~~v~~---~y~w~dVa~rTe 361 (426)
T KOG1111|consen 317 LGEPGPDDLVGAVEKAITKLRTLPL---EFHDRVKK---MYSWKDVAERTE 361 (426)
T ss_pred ccCCChHHHHHHHHHHHHHhccCch---hHHHHHHH---hccHHHHHHHHH
Confidence 333 688999998888775332322 22333333 678877665543
No 66
>PHA01630 putative group 1 glycosyl transferase
Probab=99.94 E-value=2.2e-24 Score=220.34 Aligned_cols=230 Identities=10% Similarity=0.093 Sum_probs=175.1
Q ss_pred CCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHH-hhhcCEEEEeCHHHHHHHHHHh-C--CceEEEeCCCC-CCC
Q 011969 126 RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYY-GKMANGCLCVTQAMQHELAQNW-G--IKATVLYDQPP-EFF 200 (474)
Q Consensus 126 ~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~~ad~vi~vS~~~~~~l~~~~-~--~~~~vi~n~~~-~~f 200 (474)
.|.|+++++|+.. ++...++.++ .+.+|.++++|+.+++.+.+.. + .++.++|||.+ +.|
T Consensus 68 ~~~~~v~e~~~~~---------------~l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpNGVd~~~f 132 (331)
T PHA01630 68 VGKNIVFEVADTD---------------AISHTALYFFRNQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHNLNPRMF 132 (331)
T ss_pred cCCceEEEEEeec---------------hhhHHHHHHHhhccCCEEEECCHHHHHHHHHcCCCCCCCEEEECCCCCHHHc
Confidence 4779999999841 2223556666 6889999999999999987752 2 25889999954 455
Q ss_pred CCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHH
Q 011969 201 HPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEA 280 (474)
Q Consensus 201 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a 280 (474)
.+... ..+.+.+++++|++.+.||++.|++|
T Consensus 133 ~~~~~-------------------------------------------------~~~~~~vl~~~g~~~~~Kg~d~Li~A 163 (331)
T PHA01630 133 EYKPK-------------------------------------------------EKPHPCVLAILPHSWDRKGGDIVVKI 163 (331)
T ss_pred CCCcc-------------------------------------------------ccCCCEEEEEeccccccCCHHHHHHH
Confidence 43310 01234477788899999999999999
Q ss_pred HHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHH
Q 011969 281 ALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLL 360 (474)
Q Consensus 281 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l 360 (474)
++.+.++ .++++++|+|+++....+ .++.. +.+. ++.+++..+|
T Consensus 164 ~~~l~~~---------------------------~~~~~llivG~~~~~~~l------~~~~~--~~~~-v~~~~l~~~y 207 (331)
T PHA01630 164 FHELQNE---------------------------GYDFYFLIKSSNMLDPRL------FGLNG--VKTP-LPDDDIYSLF 207 (331)
T ss_pred HHHHHhh---------------------------CCCEEEEEEeCcccchhh------ccccc--eecc-CCHHHHHHHH
Confidence 9998763 578999999976543321 12222 3455 8899999999
Q ss_pred hcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEe--------------------C-CHHHH
Q 011969 361 GSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF--------------------S-SSSEL 419 (474)
Q Consensus 361 ~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~--------------------~-~~~~l 419 (474)
+.||++++ ||..|+||++++||||||+|||+|+.+++.|++.++.+|+++ + |.+++
T Consensus 208 ~~aDv~v~---pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~~v~~~~~~~ 284 (331)
T PHA01630 208 AGCDILFY---PVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGYFLDPDIEDA 284 (331)
T ss_pred HhCCEEEE---CCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccccccCCCHHHH
Confidence 99999999 688899999999999999999999999999999998887765 3 67889
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHH
Q 011969 420 ADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEE 459 (474)
Q Consensus 420 a~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 459 (474)
++++.+++.+.. +++.++.+++++....++++|+..-++
T Consensus 285 ~~~ii~~l~~~~-~~~~~~~~~~~~~~~~~~fs~~~ia~k 323 (331)
T PHA01630 285 YQKLLEALANWT-PEKKKENLEGRAILYRENYSYNAIAKM 323 (331)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 999988888521 245566677777777778988876554
No 67
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.93 E-value=1.5e-23 Score=213.22 Aligned_cols=324 Identities=19% Similarity=0.164 Sum_probs=210.1
Q ss_pred EEeCCCCCCch-HHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHH
Q 011969 10 VVLGDLGRSPR-MQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQF 88 (474)
Q Consensus 10 ~~~~~~g~~~r-~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (474)
+..|+.||..+ ....+..|.++ ||+|+++|....... ......|++++.++.... .... ....+......+..+
T Consensus 4 ~~~~~~gG~~~~~~~la~~l~~~-G~ev~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~ 78 (350)
T cd03785 4 IAGGGTGGHIFPALALAEELRER-GAEVLFLGTKRGLEA-RLVPKAGIPLHTIPVGGL--RRKG-SLKKLKAPFKLLKGV 78 (350)
T ss_pred EEecCchhhhhHHHHHHHHHHhC-CCEEEEEECCCcchh-hcccccCCceEEEEecCc--CCCC-hHHHHHHHHHHHHHH
Confidence 33444565554 44677888886 999999997643221 233345788888883211 1111 111111111111111
Q ss_pred HHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcC
Q 011969 89 FMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMAN 168 (474)
Q Consensus 89 ~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad 168 (474)
.. +...+ +..+||+||++++.. .. .+.++++..++|++++.|+... . ..++.+.+.+|
T Consensus 79 ~~-~~~~i-~~~~pDvI~~~~~~~--~~-~~~~~a~~~~~p~v~~~~~~~~----------~-------~~~~~~~~~~~ 136 (350)
T cd03785 79 LQ-ARKIL-KKFKPDVVVGFGGYV--SG-PVGLAAKLLGIPLVIHEQNAVP----------G-------LANRLLARFAD 136 (350)
T ss_pred HH-HHHHH-HhcCCCEEEECCCCc--ch-HHHHHHHHhCCCEEEEcCCCCc----------c-------HHHHHHHHhhC
Confidence 11 11222 337899999987532 22 3456677888999886665410 0 23456667799
Q ss_pred EEEEeCHHHHHHHHHHhCCceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcc
Q 011969 169 GCLCVTQAMQHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSL 247 (474)
Q Consensus 169 ~vi~vS~~~~~~l~~~~~~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (474)
.++++|+.++++ ..+.++.+++|+.. +.+.+.. . +++++
T Consensus 137 ~vi~~s~~~~~~---~~~~~~~~i~n~v~~~~~~~~~--~----~~~~~------------------------------- 176 (350)
T cd03785 137 RVALSFPETAKY---FPKDKAVVTGNPVREEILALDR--E----RARLG------------------------------- 176 (350)
T ss_pred EEEEcchhhhhc---CCCCcEEEECCCCchHHhhhhh--h----HHhcC-------------------------------
Confidence 999999988866 22455888999854 3333221 0 22332
Q ss_pred cccccccCCCCCeEEEEEeecccCCCHHH-HHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEE-EEEEeC
Q 011969 248 AGIDVFLKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLL-FIITGK 325 (474)
Q Consensus 248 ~~~~~~~~~~~~~~i~~~G~l~~~k~~~~-Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ivG~ 325 (474)
++++.+ +++++|+....++... +++++..+.+ +++. ++++|+
T Consensus 177 ------~~~~~~-~i~~~~g~~~~~~~~~~l~~a~~~l~~-----------------------------~~~~~~~i~G~ 220 (350)
T cd03785 177 ------LRPGKP-TLLVFGGSQGARAINEAVPEALAELLR-----------------------------KRLQVIHQTGK 220 (350)
T ss_pred ------CCCCCe-EEEEECCcHhHHHHHHHHHHHHHHhhc-----------------------------cCeEEEEEcCC
Confidence 223444 5555555555566654 4577777643 3455 467888
Q ss_pred CCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccc------
Q 011969 326 GPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC------ 399 (474)
Q Consensus 326 g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~------ 399 (474)
| +.+++++.++++ .++|.|.|. .+++..+|+.||++|+ ++ + +++++|||++|+|||+++.++
T Consensus 221 g-~~~~l~~~~~~~-~~~v~~~g~---~~~~~~~l~~ad~~v~---~s-g---~~t~~Eam~~G~Pvv~~~~~~~~~~~~ 288 (350)
T cd03785 221 G-DLEEVKKAYEEL-GVNYEVFPF---IDDMAAAYAAADLVIS---RA-G---ASTVAELAALGLPAILIPLPYAADDHQ 288 (350)
T ss_pred c-cHHHHHHHHhcc-CCCeEEeeh---hhhHHHHHHhcCEEEE---CC-C---HhHHHHHHHhCCCEEEeecCCCCCCcH
Confidence 8 667788888776 468999998 4899999999999997 33 2 579999999999999987543
Q ss_pred --cccccccCCcEEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccc
Q 011969 400 --IEELVKVDKNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSAR 452 (474)
Q Consensus 400 --~~e~v~~~~~G~l~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (474)
..+.+.++++|++++ |+++++++|..+++ +++.+++|+++++++...+.
T Consensus 289 ~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~----~~~~~~~~~~~~~~~~~~~~ 343 (350)
T cd03785 289 TANARALVKAGAAVLIPQEELTPERLAAALLELLS----DPERLKAMAEAARSLARPDA 343 (350)
T ss_pred HHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhc----CHHHHHHHHHHHHhcCCCCH
Confidence 246677788999986 69999999999997 48899999999998765443
No 68
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.93 E-value=4.4e-23 Score=211.29 Aligned_cols=327 Identities=17% Similarity=0.146 Sum_probs=213.0
Q ss_pred eEEEEEeCCCCCCch-HHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHH
Q 011969 6 RACVVVLGDLGRSPR-MQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKP 84 (474)
Q Consensus 6 ~~~i~~~~~~g~~~r-~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (474)
++++++.| .|+..+ +...+..|.++ ||+|++++...... ....+..|+++++++... ....+ ....+......
T Consensus 3 ~i~i~~~g-~gG~~~~~~~la~~L~~~-g~ev~vv~~~~~~~-~~~~~~~g~~~~~~~~~~--~~~~~-~~~~l~~~~~~ 76 (357)
T PRK00726 3 KILLAGGG-TGGHVFPALALAEELKKR-GWEVLYLGTARGME-ARLVPKAGIEFHFIPSGG--LRRKG-SLANLKAPFKL 76 (357)
T ss_pred EEEEEcCc-chHhhhHHHHHHHHHHhC-CCEEEEEECCCchh-hhccccCCCcEEEEeccC--cCCCC-hHHHHHHHHHH
Confidence 46655555 465555 34667777775 99999999765321 233334689999988321 11111 11112222222
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHh
Q 011969 85 LIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYG 164 (474)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 164 (474)
+..+. .++.++ +..+||+||++++.. . +.+.++++..++|++++.|+... . ..+++++
T Consensus 77 ~~~~~-~~~~~i-k~~~pDvv~~~~~~~--~-~~~~~~~~~~~~p~v~~~~~~~~----------~-------~~~r~~~ 134 (357)
T PRK00726 77 LKGVL-QARKIL-KRFKPDVVVGFGGYV--S-GPGGLAARLLGIPLVIHEQNAVP----------G-------LANKLLA 134 (357)
T ss_pred HHHHH-HHHHHH-HhcCCCEEEECCCcc--h-hHHHHHHHHcCCCEEEEcCCCCc----------c-------HHHHHHH
Confidence 21111 222333 337899999998422 2 23556677888999987776411 0 3356667
Q ss_pred hhcCEEEEeCHHHHHHHHHHhCCceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhh
Q 011969 165 KMANGCLCVTQAMQHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETI 243 (474)
Q Consensus 165 ~~ad~vi~vS~~~~~~l~~~~~~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (474)
+.+|.+++.++.... +..+.++.+++|+.. +.+.+.. . ..+++
T Consensus 135 ~~~d~ii~~~~~~~~---~~~~~~i~vi~n~v~~~~~~~~~--~----~~~~~--------------------------- 178 (357)
T PRK00726 135 RFAKKVATAFPGAFP---EFFKPKAVVTGNPVREEILALAA--P----PARLA--------------------------- 178 (357)
T ss_pred HHhchheECchhhhh---ccCCCCEEEECCCCChHhhcccc--h----hhhcc---------------------------
Confidence 789999999885532 223456899999854 3332211 0 01111
Q ss_pred hhcccccccccCCCCCeEEEEEeecccCCCHHHHH-HHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEE
Q 011969 244 FTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILL-EAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFII 322 (474)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li-~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 322 (474)
++++.+ +++++|+....+++..++ +|++.+.+ .+ ..+++
T Consensus 179 ----------~~~~~~-~i~~~gg~~~~~~~~~~l~~a~~~~~~----------------------------~~-~~~~~ 218 (357)
T PRK00726 179 ----------GREGKP-TLLVVGGSQGARVLNEAVPEALALLPE----------------------------AL-QVIHQ 218 (357)
T ss_pred ----------CCCCCe-EEEEECCcHhHHHHHHHHHHHHHHhhh----------------------------Cc-EEEEE
Confidence 223333 677788777777766555 88877754 23 56788
Q ss_pred EeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccc---
Q 011969 323 TGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC--- 399 (474)
Q Consensus 323 vG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~--- 399 (474)
+|+|+. +.+.+..+ ++++ |.|.|. .+++..+|..||++++ ++ + +++++|||+||+|||++..++
T Consensus 219 ~G~g~~-~~~~~~~~-~~~~-v~~~g~---~~~~~~~~~~~d~~i~---~~-g---~~~~~Ea~~~g~Pvv~~~~~~~~~ 285 (357)
T PRK00726 219 TGKGDL-EEVRAAYA-AGIN-AEVVPF---IDDMAAAYAAADLVIC---RA-G---ASTVAELAAAGLPAILVPLPHAAD 285 (357)
T ss_pred cCCCcH-HHHHHHhh-cCCc-EEEeeh---HhhHHHHHHhCCEEEE---CC-C---HHHHHHHHHhCCCEEEecCCCCCc
Confidence 999875 44555555 7765 999998 4899999999999998 33 2 579999999999999987532
Q ss_pred -----cccccccCCcEEEeC--C--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccch
Q 011969 400 -----IEELVKVDKNGLLFS--S--SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARW 453 (474)
Q Consensus 400 -----~~e~v~~~~~G~l~~--~--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w 453 (474)
..+.+.+.++|++++ | +++|+++|..++++ ++.+++|++++++++....-
T Consensus 286 ~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~----~~~~~~~~~~~~~~~~~~~~ 344 (357)
T PRK00726 286 DHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSD----PERLEAMAEAARALGKPDAA 344 (357)
T ss_pred CcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcC----HHHHHHHHHHHHhcCCcCHH
Confidence 235677888999985 4 89999999999995 88999999999987644443
No 69
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.93 E-value=5.6e-23 Score=215.98 Aligned_cols=265 Identities=17% Similarity=0.192 Sum_probs=185.9
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (474)
.+||++|++.....+.+ ...++..++|+++..|.... ......+.+.++.+.+++.+|.++++|+.+++
T Consensus 123 ~~Pd~v~~~~~~~~~~~---l~~~~~~~ip~vl~~~~~~~--------~s~~~~~~~~~~~r~~~~~~d~ii~~S~~~~~ 191 (425)
T PRK05749 123 WRPKLVIIMETELWPNL---IAELKRRGIPLVLANARLSE--------RSFKRYQKFKRFYRLLFKNIDLVLAQSEEDAE 191 (425)
T ss_pred hCCCEEEEEecchhHHH---HHHHHHCCCCEEEEeccCCh--------hhHHHHHHHHHHHHHHHHhCCEEEECCHHHHH
Confidence 78999998865444433 22345678998886554411 00001123456777788899999999999999
Q ss_pred HHHHHhCCc--eEEEeCCCCCCCCCCC-hHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCC
Q 011969 180 ELAQNWGIK--ATVLYDQPPEFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKP 256 (474)
Q Consensus 180 ~l~~~~~~~--~~vi~n~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (474)
.+.+. |.+ +.+++|...+.+.+.. ......++.+++ +
T Consensus 192 ~l~~~-g~~~~i~vi~n~~~d~~~~~~~~~~~~~~r~~~~---------------------------------------~ 231 (425)
T PRK05749 192 RFLAL-GAKNEVTVTGNLKFDIEVPPELAARAATLRRQLA---------------------------------------P 231 (425)
T ss_pred HHHHc-CCCCCcEecccccccCCCChhhHHHHHHHHHHhc---------------------------------------C
Confidence 98874 543 5677775333332221 112233333332 2
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh-HHHHHH
Q 011969 257 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-ESYEEK 335 (474)
Q Consensus 257 ~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~-~~~~~~ 335 (474)
+++ +++++|+. .++.+.+++|++.+.++ .|+++|+|+|+|+++ +++++.
T Consensus 232 ~~~-vil~~~~~--~~~~~~ll~A~~~l~~~---------------------------~~~~~liivG~g~~r~~~l~~~ 281 (425)
T PRK05749 232 NRP-VWIAASTH--EGEEELVLDAHRALLKQ---------------------------FPNLLLILVPRHPERFKEVEEL 281 (425)
T ss_pred CCc-EEEEeCCC--chHHHHHHHHHHHHHHh---------------------------CCCcEEEEcCCChhhHHHHHHH
Confidence 344 66777764 57899999999998763 689999999999986 789999
Q ss_pred HHHcCCCcEEEecCCCC-----------cccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc-cccccc
Q 011969 336 IRRLRLKRVAFRTMWLS-----------AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY-SCIEEL 403 (474)
Q Consensus 336 ~~~l~l~~V~f~g~~v~-----------~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~-~~~~e~ 403 (474)
++++|+..+.|.+...+ .+++..+|+.||+++++ +|..+++|..++||||||+|||+++. ++..++
T Consensus 282 ~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~~aDi~~v~--~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~ 359 (425)
T PRK05749 282 LKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYAIADIAFVG--GSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEI 359 (425)
T ss_pred HHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHHhCCEEEEC--CCcCCCCCCCHHHHHHhCCCEEECCCccCHHHH
Confidence 99999876666654222 35899999999997774 56667799999999999999999763 455555
Q ss_pred cccC-CcEEE--eCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcccc
Q 011969 404 VKVD-KNGLL--FSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSA 451 (474)
Q Consensus 404 v~~~-~~G~l--~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (474)
++.. .+|++ ..|+++|+++|..+++ |++.+++|++++++...+.
T Consensus 360 ~~~~~~~g~~~~~~d~~~La~~l~~ll~----~~~~~~~m~~~a~~~~~~~ 406 (425)
T PRK05749 360 FERLLQAGAAIQVEDAEDLAKAVTYLLT----DPDARQAYGEAGVAFLKQN 406 (425)
T ss_pred HHHHHHCCCeEEECCHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHhC
Confidence 4331 23444 4589999999999998 4899999999999876443
No 70
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.92 E-value=8.3e-23 Score=207.59 Aligned_cols=324 Identities=16% Similarity=0.151 Sum_probs=203.6
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHH
Q 011969 6 RACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPL 85 (474)
Q Consensus 6 ~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (474)
+++|+..|.-|+..+-...+..|.++ ||+|++++...... ....+..|+++++++... ..... ....+......+
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~-g~eV~vv~~~~~~~-~~~~~~~g~~~~~i~~~~--~~~~~-~~~~l~~~~~~~ 76 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKR-GVEVLWLGTKRGLE-KRLVPKAGIEFYFIPVGG--LRRKG-SFRLIKTPLKLL 76 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhC-CCEEEEEeCCCcch-hcccccCCCceEEEeccC--cCCCC-hHHHHHHHHHHH
Confidence 35655555433333334678888886 99999998643221 123344689999888321 11111 111111111111
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhh
Q 011969 86 IQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGK 165 (474)
Q Consensus 86 ~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 165 (474)
..+. .+...+ +..+||+||++++. +.. .+.++++..+.|+++..++.. . ...++++.+
T Consensus 77 ~~~~-~l~~~i-~~~~pDvVi~~~~~--~~~-~~~~~~~~~~~p~v~~~~~~~---------~--------~~~~~~~~~ 134 (348)
T TIGR01133 77 KAVF-QARRIL-KKFKPDAVIGFGGY--VSG-PAGLAAKLLGIPLFHHEQNAV---------P--------GLTNKLLSR 134 (348)
T ss_pred HHHH-HHHHHH-HhcCCCEEEEcCCc--ccH-HHHHHHHHcCCCEEEECCCCC---------c--------cHHHHHHHH
Confidence 1111 111222 33789999998742 222 345566777889886544331 0 123566778
Q ss_pred hcCEEEEeCHHHHHHHHHHhCCceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhh
Q 011969 166 MANGCLCVTQAMQHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIF 244 (474)
Q Consensus 166 ~ad~vi~vS~~~~~~l~~~~~~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (474)
.+|.++++|+.+++++ +..+++|+.. ..+.+.. . +.+++
T Consensus 135 ~~d~ii~~~~~~~~~~------~~~~i~n~v~~~~~~~~~--~----~~~~~---------------------------- 174 (348)
T TIGR01133 135 FAKKVLISFPGAKDHF------EAVLVGNPVRQEIRSLPV--P----RERFG---------------------------- 174 (348)
T ss_pred HhCeeEECchhHhhcC------CceEEcCCcCHHHhcccc--h----hhhcC----------------------------
Confidence 8999999999888665 2368888754 2222211 1 11122
Q ss_pred hcccccccccCCCCCeEEEEEeecccCCCHHH-HHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEE-EE
Q 011969 245 TSLAGIDVFLKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF-II 322 (474)
Q Consensus 245 ~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~-Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~i 322 (474)
++++.+ +++++|+....|++.. +++|+..+.+ ++.++ ++
T Consensus 175 ---------~~~~~~-~i~~~gg~~~~~~~~~~l~~a~~~l~~-----------------------------~~~~~~~~ 215 (348)
T TIGR01133 175 ---------LREGKP-TILVLGGSQGAKILNELVPKALAKLAE-----------------------------KGIQIVHQ 215 (348)
T ss_pred ---------CCCCCe-EEEEECCchhHHHHHHHHHHHHHHHhh-----------------------------cCcEEEEE
Confidence 223333 7788887666777654 4577777654 23444 44
Q ss_pred EeCCCChHHHHHHHHHcCCC-cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccc--
Q 011969 323 TGKGPDKESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC-- 399 (474)
Q Consensus 323 vG~g~~~~~~~~~~~~l~l~-~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~-- 399 (474)
+|++ +.+++++.++++++. .+.|. . +++..+|+.||++|. ++ | |++++|||++|+|+|+++.++
T Consensus 216 ~g~~-~~~~l~~~~~~~~l~~~v~~~-~----~~~~~~l~~ad~~v~---~~-g---~~~l~Ea~~~g~Pvv~~~~~~~~ 282 (348)
T TIGR01133 216 TGKN-DLEKVKNVYQELGIEAIVTFI-D----ENMAAAYAAADLVIS---RA-G---ASTVAELAAAGVPAILIPYPYAA 282 (348)
T ss_pred CCcc-hHHHHHHHHhhCCceEEecCc-c----cCHHHHHHhCCEEEE---CC-C---hhHHHHHHHcCCCEEEeeCCCCc
Confidence 5544 457788888888874 34443 2 389999999999997 33 2 679999999999999997643
Q ss_pred -----cccccccCCcEEEeC--C--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccc
Q 011969 400 -----IEELVKVDKNGLLFS--S--SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSAR 452 (474)
Q Consensus 400 -----~~e~v~~~~~G~l~~--~--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (474)
..+++.++++|++++ | +++++++|..+++ |++.+++|+++++++.....
T Consensus 283 ~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~----~~~~~~~~~~~~~~~~~~~~ 340 (348)
T TIGR01133 283 DDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL----DPANLEAMAEAARKLAKPDA 340 (348)
T ss_pred cchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc----CHHHHHHHHHHHHhcCCccH
Confidence 235788889999985 3 9999999999998 48899999999988764443
No 71
>PHA01633 putative glycosyl transferase group 1
Probab=99.91 E-value=5.5e-22 Score=202.16 Aligned_cols=233 Identities=14% Similarity=0.190 Sum_probs=167.5
Q ss_pred CCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHHHHHHHhCCc-eEEEeCCC-CCCCCCCC
Q 011969 127 RSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQP-PEFFHPTS 204 (474)
Q Consensus 127 ~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~-~~vi~n~~-~~~f~~~~ 204 (474)
+.+++.++|+.. . . ..+.+...+ .+.+|++|+.+++.+.+. |.+ ..++++|. .+.|.|..
T Consensus 70 ~~~~~tt~~g~~-~--------~-------~~y~~~m~~-~~~vIavS~~t~~~L~~~-G~~~~i~I~~GVD~~~f~p~~ 131 (335)
T PHA01633 70 KKYFYTTCDGIP-N--------I-------EIVNKYLLQ-DVKFIPNSKFSAENLQEV-GLQVDLPVFHGINFKIVENAE 131 (335)
T ss_pred CCceEEeeCCcC-c--------h-------HHHHHHHhc-CCEEEeCCHHHHHHHHHh-CCCCceeeeCCCChhhcCccc
Confidence 467888999882 1 0 233444444 668999999999999875 543 23567774 36666543
Q ss_pred hHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHh
Q 011969 205 LEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMY 284 (474)
Q Consensus 205 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l 284 (474)
. ...+++++++. ..+ ...+++++||+.++||++.|++|++.+
T Consensus 132 ~-~~~~~r~~~~~------------------------------------~~~-~~~~i~~vGRl~~~KG~~~LI~A~~~L 173 (335)
T PHA01633 132 K-LVPQLKQKLDK------------------------------------DFP-DTIKFGIVSGLTKRKNMDLMLQVFNEL 173 (335)
T ss_pred h-hhHHHHHHhCc------------------------------------CCC-CCeEEEEEeCCccccCHHHHHHHHHHH
Confidence 1 12344444441 012 234889999999999999999999998
Q ss_pred HHHHhhhhccCCCchhhHhHhhhcCCccccCC----CEEEEEEeCCCChHHHHHHHHHcCC-CcEEEec--CCCCcccHH
Q 011969 285 DRRVAAILNEDDSTNEEVFLKEISDGKQYLYP----RLLFIITGKGPDKESYEEKIRRLRL-KRVAFRT--MWLSAEDYP 357 (474)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~ivG~g~~~~~~~~~~~~l~l-~~V~f~g--~~v~~~~~~ 357 (474)
.++ .| +++++++|.+ ..+++++ ++|.|.| ++++.+++.
T Consensus 174 ~~~---------------------------~p~~~~~i~l~ivG~~--------~~~~l~l~~~V~f~g~~G~~~~~dl~ 218 (335)
T PHA01633 174 NTK---------------------------YPDIAKKIHFFVISHK--------QFTQLEVPANVHFVAEFGHNSREYIF 218 (335)
T ss_pred HHh---------------------------CCCccccEEEEEEcHH--------HHHHcCCCCcEEEEecCCCCCHHHHH
Confidence 763 34 4688888731 3455667 6899995 236789999
Q ss_pred HHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccc------------------cCCcEEEeC--CHH
Q 011969 358 LLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVK------------------VDKNGLLFS--SSS 417 (474)
Q Consensus 358 ~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~------------------~~~~G~l~~--~~~ 417 (474)
.+|+.||++|+ ||..|+||++++||||||+|||+++.+++.|++. .+++|++++ |++
T Consensus 219 ~~y~~aDifV~---PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~~~~~~d~~ 295 (335)
T PHA01633 219 AFYGAMDFTIV---PSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKWKIHKFQIE 295 (335)
T ss_pred HHHHhCCEEEE---CCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCceeeecCCCHH
Confidence 99999999999 6888999999999999999999999999888644 134577776 799
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHH
Q 011969 418 ELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWE 458 (474)
Q Consensus 418 ~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 458 (474)
+++++|..++... +++ ..+.++++.+++++|+.-.+
T Consensus 296 ~la~ai~~~~~~~--~~~---~~~~~~~~~a~~f~~~~~~~ 331 (335)
T PHA01633 296 DMANAIILAFELQ--DRE---ERSMKLKELAKKYDIRNLYT 331 (335)
T ss_pred HHHHHHHHHHhcc--Chh---hhhHHHHHHHHhcCHHHHHH
Confidence 9999999997752 222 22555666666787765443
No 72
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.89 E-value=1.5e-21 Score=199.38 Aligned_cols=242 Identities=14% Similarity=0.148 Sum_probs=170.2
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhh--CCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSL--RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAM 177 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~ 177 (474)
.+-|+||++.|+.........+++++ .++|+|+++||.+. .. ...... ....++.+++.||.++|+|+.+
T Consensus 63 ~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k~i~~ihD~~~-~~---~~~~~~----~~~~~~~~~~~aD~iI~~S~~~ 134 (333)
T PRK09814 63 KPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVKIIILIHDIEP-LR---FDSNYY----LMKEEIDMLNLADVLIVHSKKM 134 (333)
T ss_pred CCCCEEEEECCCCchHHHHHHHHHHHHHcCCEEEEEECCcHH-Hh---ccccch----hhHHHHHHHHhCCEEEECCHHH
Confidence 44499999998765422122222222 26999999999843 11 111111 1466888889999999999999
Q ss_pred HHHHHHHhCC---ceEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccccccccc
Q 011969 178 QHELAQNWGI---KATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFL 254 (474)
Q Consensus 178 ~~~l~~~~~~---~~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (474)
++++.+. |. ++.++++.+.... .. .. .
T Consensus 135 ~~~l~~~-g~~~~~i~~~~~~~~~~~--~~--~~---------------------------------------------~ 164 (333)
T PRK09814 135 KDRLVEE-GLTTDKIIVQGIFDYLND--IE--LV---------------------------------------------K 164 (333)
T ss_pred HHHHHHc-CCCcCceEeccccccccc--cc--cc---------------------------------------------c
Confidence 9999874 54 3444443321100 00 00 0
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHH
Q 011969 255 KPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEE 334 (474)
Q Consensus 255 ~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~ 334 (474)
..+....++|+|++...++ | +. . .++++|+|+|+|++.+
T Consensus 165 ~~~~~~~i~yaG~l~k~~~---l-~~-----~----------------------------~~~~~l~i~G~g~~~~---- 203 (333)
T PRK09814 165 TPSFQKKINFAGNLEKSPF---L-KN-----W----------------------------SQGIKLTVFGPNPEDL---- 203 (333)
T ss_pred cccCCceEEEecChhhchH---H-Hh-----c----------------------------CCCCeEEEECCCcccc----
Confidence 0112238999999984321 1 10 1 3678999999998654
Q ss_pred HHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccC----CC----CCCCchHHHHHHhcCCcEEEeccccccccccc
Q 011969 335 KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTS----SS----GLDLPMKVVDMFGCGLPVCAVSYSCIEELVKV 406 (474)
Q Consensus 335 ~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~----s~----~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~ 406 (474)
...++|.|.|. ++.++++.+|+. |+++++... +. ...+|.|+.||||||+|||+++.+++.++|++
T Consensus 204 ----~~~~~V~f~G~-~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~~~V~~ 277 (333)
T PRK09814 204 ----ENSANISYKGW-FDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIADFIVE 277 (333)
T ss_pred ----ccCCCeEEecC-CCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHHHHHHh
Confidence 12369999998 999999999998 877775433 11 25689999999999999999999999999999
Q ss_pred CCcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccc
Q 011969 407 DKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSAR 452 (474)
Q Consensus 407 ~~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (474)
+++|+++++.++++++|..+. ++++++|++++++.+...+
T Consensus 278 ~~~G~~v~~~~el~~~l~~~~------~~~~~~m~~n~~~~~~~~~ 317 (333)
T PRK09814 278 NGLGFVVDSLEELPEIIDNIT------EEEYQEMVENVKKISKLLR 317 (333)
T ss_pred CCceEEeCCHHHHHHHHHhcC------HHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999852 5678999999999775444
No 73
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.89 E-value=1.8e-20 Score=200.02 Aligned_cols=322 Identities=18% Similarity=0.129 Sum_probs=198.3
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHH-hhCCCcEEEEecCchhhhhhhccCCCchHH-----------------HHHHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWAS-SLRRSAFIVDWHNFGYTLLSLSLGRRSHFV-----------------SIYRWIEK 161 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~-----------------~~~~~~e~ 161 (474)
.++|++|+|. +.+...+..++ +..++|+|+|.|....--. +.-+. ..+. .-...+|+
T Consensus 147 ~~~dViH~He---Wm~g~a~~~lK~~~~~VptVfTtHAT~~GR~-l~~g~-~~~y~~l~~~~~d~eA~~~~I~~r~~iE~ 221 (590)
T cd03793 147 EPAVVAHFHE---WQAGVGLPLLRKRKVDVSTIFTTHATLLGRY-LCAGN-VDFYNNLDYFDVDKEAGKRGIYHRYCIER 221 (590)
T ss_pred CCCeEEEEcc---hhHhHHHHHHHHhCCCCCEEEEecccccccc-cccCC-cccchhhhhcchhhhhhcccchHHHHHHH
Confidence 5799999999 55555555666 4567899999996531100 00000 0000 11235899
Q ss_pred HHhhhcCEEEEeCHHHHHHHHHHhCCc-eEEEeCCC-CCCCCCCChH-HH-HHHHHhhhhccCCCCCccccccccccCCc
Q 011969 162 YYGKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQP-PEFFHPTSLE-EK-HELFCRLNKILHQPLGVQDCVSNAGMEGQ 237 (474)
Q Consensus 162 ~~~~~ad~vi~vS~~~~~~l~~~~~~~-~~vi~n~~-~~~f~~~~~~-~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 237 (474)
.+...||.+++||+.++.++...++.+ -.|+|||. ++.|.+.... .. ..-++++.. ++
T Consensus 222 ~aa~~Ad~fttVS~it~~E~~~Ll~~~pd~ViPNGid~~~f~~~~e~~~~~~~~k~ki~~----------f~-------- 283 (590)
T cd03793 222 AAAHCAHVFTTVSEITAYEAEHLLKRKPDVVLPNGLNVKKFSALHEFQNLHAQSKEKINE----------FV-------- 283 (590)
T ss_pred HHHhhCCEEEECChHHHHHHHHHhCCCCCEEeCCCcchhhcccchhhhhhhHHhhhhhhH----------HH--------
Confidence 999999999999999999999988877 35999994 4666554321 11 111111110 00
Q ss_pred CcchhhhhcccccccccCCCCCeEEEE-Eeeccc-CCCHHHHHHHHHHhHHHHhhhhccCCC-------------ch---
Q 011969 238 KADETIFTSLAGIDVFLKPNRPALVVS-STSWTP-DEDFGILLEAALMYDRRVAAILNEDDS-------------TN--- 299 (474)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-~G~l~~-~k~~~~Li~a~~~l~~~~~~~~~~~~~-------------~~--- 299 (474)
...|. +.+.+.++.+ +++| +||+.. +||++.+|+|+..+..++ +...| ||
T Consensus 284 ---~~~~~----~~~~~~~d~t-li~f~~GR~e~~nKGiDvlIeAl~rLn~~l----~~~~~~~tVvafii~p~~~~~~~ 351 (590)
T cd03793 284 ---RGHFY----GHYDFDLDKT-LYFFTAGRYEFSNKGADMFLEALARLNYLL----KVEGSDTTVVAFFIMPAKTNNFN 351 (590)
T ss_pred ---HHHHh----hhcCCCCCCe-EEEEEeeccccccCCHHHHHHHHHHHHHHH----HhcCCCCeEEEEEEecCccCCcC
Confidence 00010 1112334555 4445 899998 999999999999998752 22222 11
Q ss_pred hhH----------------hHhhhcCC---------------------------------ccccCCCEEEEEEeCCCChH
Q 011969 300 EEV----------------FLKEISDG---------------------------------KQYLYPRLLFIITGKGPDKE 330 (474)
Q Consensus 300 ~~~----------------~~~~~~~~---------------------------------~~~~~~~~~l~ivG~g~~~~ 330 (474)
.|. +-++|.+. ++...|-+.-.+.- ...+
T Consensus 352 ~~~l~g~~~~~~l~~~~~~i~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~--~~~D 429 (590)
T cd03793 352 VESLKGQAVRKQLRDTVNSVKEKIGKRLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVD--DAND 429 (590)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHhhhhhhhHhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCc--CccC
Confidence 111 11111111 01111211111111 2234
Q ss_pred HHHHHHHHcCC-C------cEEEecCCCCc------ccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc
Q 011969 331 SYEEKIRRLRL-K------RVAFRTMWLSA------EDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 397 (474)
Q Consensus 331 ~~~~~~~~l~l-~------~V~f~g~~v~~------~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~ 397 (474)
.+...++++++ + +|.|.+.+++. .++.++++.||++|+ ||..|+||++++||||||+|||+|+.
T Consensus 430 ~il~~~r~~~l~N~~~drVkvif~P~~L~~~~~~~g~~y~E~~~g~dl~v~---PS~yE~fG~~~lEAma~G~PvI~t~~ 506 (590)
T cd03793 430 PILNHIRRIQLFNSPEDRVKVVFHPEFLSSTNPLLGLDYEEFVRGCHLGVF---PSYYEPWGYTPAECTVMGIPSITTNL 506 (590)
T ss_pred HHHHHHHHhcCcCCCCCeEEEEEcccccCCCCCcCCcchHHHhhhceEEEe---ccccCCCCcHHHHHHHcCCCEEEccC
Confidence 57777888877 2 48888877764 358899999999999 79999999999999999999999999
Q ss_pred ccc----ccccccC-CcEEEeC---------CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Q 011969 398 SCI----EELVKVD-KNGLLFS---------SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKP 463 (474)
Q Consensus 398 ~~~----~e~v~~~-~~G~l~~---------~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 463 (474)
+|+ .|++.++ ..|+.+. ++++++++|.++++. +...+...+..+.+.+..+.|+.-...+.+.
T Consensus 507 ~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~m~~~~~~---~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~~A 583 (590)
T cd03793 507 SGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQYMYEFCQL---SRRQRIIQRNRTERLSDLLDWRNLGRYYRKA 583 (590)
T ss_pred cchhhhhHHHhccCCCceEEEecCCccchHHHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 888 5655444 3455542 377888888888853 2333333333444666678887766665544
Q ss_pred H
Q 011969 464 L 464 (474)
Q Consensus 464 ~ 464 (474)
.
T Consensus 584 ~ 584 (590)
T cd03793 584 R 584 (590)
T ss_pred H
Confidence 3
No 74
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.89 E-value=7.9e-21 Score=196.60 Aligned_cols=254 Identities=11% Similarity=0.093 Sum_probs=173.8
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (474)
.+||+||++.|. ..+. ....++..++|++...++++ .. .+++++.+|.++++|+.+++
T Consensus 103 ~~pD~Vi~~~~~--~~~~-~~~~~~~~~ip~~~~~td~~-------~~------------~~~~~~~ad~i~~~s~~~~~ 160 (380)
T PRK13609 103 EKPDIVINTFPI--IAVP-ELKKQTGISIPTYNVLTDFC-------LH------------KIWVHREVDRYFVATDHVKK 160 (380)
T ss_pred hCcCEEEEcChH--HHHH-HHHHhcCCCCCeEEEeCCCC-------CC------------cccccCCCCEEEECCHHHHH
Confidence 789999997752 2222 12222334688775555542 11 11345789999999999999
Q ss_pred HHHHHhCCc---eEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCC
Q 011969 180 ELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKP 256 (474)
Q Consensus 180 ~l~~~~~~~---~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (474)
.+.+. |.+ +.++.+.....|.+.. ....++++++ +++
T Consensus 161 ~l~~~-gi~~~ki~v~G~p~~~~f~~~~--~~~~~~~~~~-------------------------------------l~~ 200 (380)
T PRK13609 161 VLVDI-GVPPEQVVETGIPIRSSFELKI--NPDIIYNKYQ-------------------------------------LCP 200 (380)
T ss_pred HHHHc-CCChhHEEEECcccChHHcCcC--CHHHHHHHcC-------------------------------------CCC
Confidence 88874 653 5555443323343221 1223555555 345
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeC-C-CChHHHHH
Q 011969 257 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK-G-PDKESYEE 334 (474)
Q Consensus 257 ~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~-g-~~~~~~~~ 334 (474)
+.++++++.|++...|++..+++++.. .++++++++|+ + +..+.+++
T Consensus 201 ~~~~il~~~G~~~~~k~~~~li~~l~~-------------------------------~~~~~~viv~G~~~~~~~~l~~ 249 (380)
T PRK13609 201 NKKILLIMAGAHGVLGNVKELCQSLMS-------------------------------VPDLQVVVVCGKNEALKQSLED 249 (380)
T ss_pred CCcEEEEEcCCCCCCcCHHHHHHHHhh-------------------------------CCCcEEEEEeCCCHHHHHHHHH
Confidence 566677888999988999988887753 36788887653 3 23466676
Q ss_pred HHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec-ccccc----cccccCCc
Q 011969 335 KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCIE----ELVKVDKN 409 (474)
Q Consensus 335 ~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~-~~~~~----e~v~~~~~ 409 (474)
.+++++ ++|.|+|. .+++..+|+.||+++. .+ .|++++|||+||+|||+++ .++.. +.+...+.
T Consensus 250 ~~~~~~-~~v~~~g~---~~~~~~l~~~aD~~v~---~~----gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~ 318 (380)
T PRK13609 250 LQETNP-DALKVFGY---VENIDELFRVTSCMIT---KP----GGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGA 318 (380)
T ss_pred HHhcCC-CcEEEEec---hhhHHHHHHhccEEEe---CC----CchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCc
Confidence 666655 68999998 4679999999999885 21 3779999999999999976 44422 34444556
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHH
Q 011969 410 GLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHA 461 (474)
Q Consensus 410 G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 461 (474)
|+...|+++++++|.+++++ ++.+++|++++.+....++++...+.+.
T Consensus 319 ~~~~~~~~~l~~~i~~ll~~----~~~~~~m~~~~~~~~~~~s~~~i~~~i~ 366 (380)
T PRK13609 319 AVVIRDDEEVFAKTEALLQD----DMKLLQMKEAMKSLYLPEPADHIVDDIL 366 (380)
T ss_pred EEEECCHHHHHHHHHHHHCC----HHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 66667999999999999984 8889999999988776666665555443
No 75
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.87 E-value=2.2e-21 Score=177.72 Aligned_cols=157 Identities=24% Similarity=0.428 Sum_probs=140.7
Q ss_pred CCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHH
Q 011969 256 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEK 335 (474)
Q Consensus 256 ~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~ 335 (474)
.+.+.+++|+|++.+.||++.+++++..+.++ ..+++.++|+|.++....+...
T Consensus 12 ~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~--------------------------~~~~~~l~i~G~~~~~~~~~~~ 65 (172)
T PF00534_consen 12 PDKKKIILFIGRLDPEKGIDLLIEAFKKLKEK--------------------------KNPNYKLVIVGDGEYKKELKNL 65 (172)
T ss_dssp -TTSEEEEEESESSGGGTHHHHHHHHHHHHHH--------------------------HHTTEEEEEESHCCHHHHHHHH
T ss_pred CCCCeEEEEEecCccccCHHHHHHHHHHHHhh--------------------------cCCCeEEEEEcccccccccccc
Confidence 45566999999999999999999999998752 1488999999988888889999
Q ss_pred HHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEeC
Q 011969 336 IRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS 414 (474)
Q Consensus 336 ~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~ 414 (474)
++.+++ ++|.|.|. ++.+++..+|+.||++++ +|..+++|.+++|||+||+|||+++.++..|++.++.+|++++
T Consensus 66 ~~~~~~~~~i~~~~~-~~~~~l~~~~~~~di~v~---~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~~~g~~~~ 141 (172)
T PF00534_consen 66 IEKLNLKENIIFLGY-VPDDELDELYKSSDIFVS---PSRNEGFGLSLLEAMACGCPVIASDIGGNNEIINDGVNGFLFD 141 (172)
T ss_dssp HHHTTCGTTEEEEES-HSHHHHHHHHHHTSEEEE----BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHSGTTTSEEEES
T ss_pred ccccccccccccccc-ccccccccccccceeccc---cccccccccccccccccccceeeccccCCceeeccccceEEeC
Confidence 999999 79999998 888899999999999999 6777999999999999999999999999999999999999997
Q ss_pred --CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011969 415 --SSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 446 (474)
Q Consensus 415 --~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 446 (474)
|+++++++|..++++ ++.++.|++++++
T Consensus 142 ~~~~~~l~~~i~~~l~~----~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 142 PNDIEELADAIEKLLND----PELRQKLGKNARE 171 (172)
T ss_dssp TTSHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCC----HHHHHHHHHHhcC
Confidence 589999999999995 7899999999986
No 76
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.86 E-value=4.6e-20 Score=196.55 Aligned_cols=278 Identities=12% Similarity=0.049 Sum_probs=182.5
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHh-hCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASS-LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (474)
...|+|++|++..+ ++...++. ....++++.+|-...+..- + +..+.. ..+-+.+ -.+|.+..-+....
T Consensus 130 ~~~d~iwihDyhl~---llp~~lr~~~~~~~i~~f~HipfP~~e~--~-~~lp~~---~~ll~~~-l~~D~igF~t~~~~ 199 (460)
T cd03788 130 RPGDLVWVHDYHLL---LLPQMLRERGPDARIGFFLHIPFPSSEI--F-RCLPWR---EELLRGL-LGADLIGFQTERYA 199 (460)
T ss_pred CCCCEEEEeChhhh---HHHHHHHhhCCCCeEEEEEeCCCCChHH--H-hhCCCh---HHHHHHH-hcCCEEEECCHHHH
Confidence 46899999996332 23344443 4467889999965211100 0 000110 1222222 24888888886654
Q ss_pred HHHHHH-----------------hC--CceEEEeCCC-CCCCCCCCh--HHHHHHHHhhhhccCCCCCccccccccccCC
Q 011969 179 HELAQN-----------------WG--IKATVLYDQP-PEFFHPTSL--EEKHELFCRLNKILHQPLGVQDCVSNAGMEG 236 (474)
Q Consensus 179 ~~l~~~-----------------~~--~~~~vi~n~~-~~~f~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 236 (474)
+.+.+. .| .++.++|+|. ++.|.+... ..+...++..+
T Consensus 200 ~~Fl~~~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~~-------------------- 259 (460)
T cd03788 200 RNFLSCCSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAELRE-------------------- 259 (460)
T ss_pred HHHHHHHHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCchhHHHHHHHHH--------------------
Confidence 443331 12 2368889984 355544311 11111111111
Q ss_pred cCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCC
Q 011969 237 QKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYP 316 (474)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (474)
..++++ +++++||+.+.||++.+++|+..+.++ +|
T Consensus 260 -----------------~~~~~~-~il~vgRl~~~Kgi~~ll~A~~~ll~~---------------------------~p 294 (460)
T cd03788 260 -----------------RLGGRK-LIVGVDRLDYSKGIPERLLAFERLLER---------------------------YP 294 (460)
T ss_pred -----------------hcCCCE-EEEEecCccccCCHHHHHHHHHHHHHh---------------------------Ch
Confidence 113333 899999999999999999999988763 45
Q ss_pred C----EEEEEEeCC-----CChHHHHHHHH----HcC-------CCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCC
Q 011969 317 R----LLFIITGKG-----PDKESYEEKIR----RLR-------LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGL 376 (474)
Q Consensus 317 ~----~~l~ivG~g-----~~~~~~~~~~~----~l~-------l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e 376 (474)
+ ++|+++|.+ ++.+++++.++ +++ ...|.++++.++.+++..+|+.||++|+ +|..|
T Consensus 295 ~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~---pS~~E 371 (460)
T cd03788 295 EWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALV---TPLRD 371 (460)
T ss_pred hhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEEe---Ccccc
Confidence 4 678888643 33334444443 322 2346666555899999999999999999 78899
Q ss_pred CCchHHHHHHhcCCc----EEEecccccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccc
Q 011969 377 DLPMKVVDMFGCGLP----VCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLS 450 (474)
Q Consensus 377 ~~p~kv~Eama~G~P----Via~~~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 450 (474)
+||++++||||||+| ||+++.+|..+. +.+|++++ |+++++++|.+++++ ++++++++++++++...+
T Consensus 372 g~~lv~lEAma~g~p~~g~vV~S~~~G~~~~---~~~g~lv~p~d~~~la~ai~~~l~~---~~~e~~~~~~~~~~~v~~ 445 (460)
T cd03788 372 GMNLVAKEYVACQDDDPGVLILSEFAGAAEE---LSGALLVNPYDIDEVADAIHRALTM---PLEERRERHRKLREYVRT 445 (460)
T ss_pred ccCcccceeEEEecCCCceEEEeccccchhh---cCCCEEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHh
Confidence 999999999999999 999988777765 46789986 799999999999986 567788888888887777
Q ss_pred cchHHHHHHHH
Q 011969 451 ARWATEWEEHA 461 (474)
Q Consensus 451 ~~w~~~~~~~~ 461 (474)
++|..-.++.+
T Consensus 446 ~~~~~w~~~~l 456 (460)
T cd03788 446 HDVQAWANSFL 456 (460)
T ss_pred CCHHHHHHHHH
Confidence 77765334433
No 77
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.85 E-value=2.8e-19 Score=185.82 Aligned_cols=260 Identities=17% Similarity=0.188 Sum_probs=174.2
Q ss_pred CCCCEEEEeCCCCh--hHHHHHHHHH-hhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHH
Q 011969 100 ASPDVFLVQNPPSV--PTLVAVKWAS-SLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQA 176 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~--~~~~~~~~~~-~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~ 176 (474)
.+||+||++.|... +...+..+.+ ...++|++..+.|++. .. ..++.+.+|.++++|+.
T Consensus 99 ~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~------~~------------~~w~~~~~d~~~~~s~~ 160 (382)
T PLN02605 99 YKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGT------CH------------PTWFHKGVTRCFCPSEE 160 (382)
T ss_pred cCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCCC------cC------------cccccCCCCEEEECCHH
Confidence 78999999765321 2221122111 1236888888877720 00 12234789999999999
Q ss_pred HHHHHHHHhCCc---eEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccc
Q 011969 177 MQHELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVF 253 (474)
Q Consensus 177 ~~~~l~~~~~~~---~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (474)
+++.+.+. |.+ +.++.++....|.+.. ..+..+++++|
T Consensus 161 ~~~~l~~~-g~~~~ki~v~g~~v~~~f~~~~-~~~~~~r~~~g------------------------------------- 201 (382)
T PLN02605 161 VAKRALKR-GLEPSQIRVYGLPIRPSFARAV-RPKDELRRELG------------------------------------- 201 (382)
T ss_pred HHHHHHHc-CCCHHHEEEECcccCHhhccCC-CCHHHHHHHcC-------------------------------------
Confidence 99988875 654 6666665433332221 13445667776
Q ss_pred cCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEE-EEEEeCCCChHHH
Q 011969 254 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLL-FIITGKGPDKESY 332 (474)
Q Consensus 254 ~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ivG~g~~~~~~ 332 (474)
++++.+ +++++|+....|++..+++++...... . ....++.. ++++|+++. +
T Consensus 202 l~~~~~-~il~~Gg~~g~~~~~~li~~l~~~~~~----------------------~-~~~~~~~~~~vi~G~~~~---~ 254 (382)
T PLN02605 202 MDEDLP-AVLLMGGGEGMGPLEETARALGDSLYD----------------------K-NLGKPIGQVVVICGRNKK---L 254 (382)
T ss_pred CCCCCc-EEEEECCCcccccHHHHHHHHHHhhcc----------------------c-cccCCCceEEEEECCCHH---H
Confidence 334555 788899888889999999998764310 0 00024454 678887642 2
Q ss_pred HHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc------cccccccc
Q 011969 333 EEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY------SCIEELVK 405 (474)
Q Consensus 333 ~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~------~~~~e~v~ 405 (474)
++..++... .+|.|+|. + ++++.+|+.||++|. ++ | |.+++|||+||+|||+++. ++. +.+.
T Consensus 255 ~~~L~~~~~~~~v~~~G~-~--~~~~~l~~aaDv~V~---~~-g---~~ti~EAma~g~PvI~~~~~pgqe~gn~-~~i~ 323 (382)
T PLN02605 255 QSKLESRDWKIPVKVRGF-V--TNMEEWMGACDCIIT---KA-G---PGTIAEALIRGLPIILNGYIPGQEEGNV-PYVV 323 (382)
T ss_pred HHHHHhhcccCCeEEEec-c--ccHHHHHHhCCEEEE---CC-C---cchHHHHHHcCCCEEEecCCCccchhhH-HHHH
Confidence 222333332 47999998 4 689999999999998 33 2 6799999999999999983 333 3455
Q ss_pred cCCcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHH
Q 011969 406 VDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEW 457 (474)
Q Consensus 406 ~~~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 457 (474)
+++.|+...|+++++++|..++++ +++.+++|++++++.....+++...
T Consensus 324 ~~g~g~~~~~~~~la~~i~~ll~~---~~~~~~~m~~~~~~~~~~~a~~~i~ 372 (382)
T PLN02605 324 DNGFGAFSESPKEIARIVAEWFGD---KSDELEAMSENALKLARPEAVFDIV 372 (382)
T ss_pred hCCceeecCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCchHHHHH
Confidence 677888888999999999999984 4888999999999876555544443
No 78
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.84 E-value=8.2e-19 Score=164.29 Aligned_cols=120 Identities=33% Similarity=0.443 Sum_probs=104.9
Q ss_pred EEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHHHHHcCC-C
Q 011969 264 SSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRL-K 342 (474)
Q Consensus 264 ~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~~~l~l-~ 342 (474)
|+|++.+.||++.+++++..+.++ .++++++++|.+++.....+.+..++. +
T Consensus 109 ~~g~~~~~k~~~~~~~a~~~l~~~---------------------------~~~~~~~i~G~~~~~~~~~~~~~~~~~~~ 161 (229)
T cd01635 109 FVGRLAPEKGLDDLIEAFALLKER---------------------------GPDLKLVIAGDGPEREYLEELLAALLLLD 161 (229)
T ss_pred EEEeecccCCHHHHHHHHHHHHHh---------------------------CCCeEEEEEeCCCChHHHHHHHHhcCCcc
Confidence 899999999999999999999773 689999999999888777766677776 7
Q ss_pred cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEe
Q 011969 343 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF 413 (474)
Q Consensus 343 ~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~ 413 (474)
+|.+.|...+.+++..+++.||++++ ++..|++|++++|||+||+|||+++.++..|++.++++|+++
T Consensus 162 ~v~~~~~~~~~~~~~~~~~~~di~l~---~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~e~i~~~~~g~~~ 229 (229)
T cd01635 162 RVIFLGGLDPEELLALLLAAADVFVL---PSLREGFGLVVLEAMACGLPVIATDVGGPPEIVEDGLTGLLV 229 (229)
T ss_pred cEEEeCCCCcHHHHHHHhhcCCEEEe---cccccCcChHHHHHHhCCCCEEEcCCCCcceEEECCCceEEC
Confidence 99999983256667777777999999 677779999999999999999999999999999999999874
No 79
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.84 E-value=1.5e-18 Score=184.57 Aligned_cols=269 Identities=11% Similarity=0.061 Sum_probs=182.6
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhC-CCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLR-RSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (474)
..-|+|++|+. ...++...++... ..++.+.+|-...+.. ..+.-|.. +.+-+-+ -.||.|-.-+...+
T Consensus 126 ~~~d~vwvhDY---hl~l~p~~lr~~~~~~~igfFlHipfP~~e---~f~~lp~r---~~il~gl-l~~dligF~t~~~~ 195 (456)
T TIGR02400 126 QPGDIVWVHDY---HLMLLPAMLRELGVQNKIGFFLHIPFPSSE---IYRTLPWR---RELLEGL-LAYDLVGFQTYDDA 195 (456)
T ss_pred CCCCEEEEecc---hhhHHHHHHHhhCCCCeEEEEEeCCCCChH---HHhhCCcH---HHHHHHH-hcCCEEEECCHHHH
Confidence 45689999994 3333455555543 4577788886521110 00111111 1222222 37899999998877
Q ss_pred HHHHHH----hC------------C--ceEEEeCCC-CCCCCCCChH-----HHHHHHHhhhhccCCCCCcccccccccc
Q 011969 179 HELAQN----WG------------I--KATVLYDQP-PEFFHPTSLE-----EKHELFCRLNKILHQPLGVQDCVSNAGM 234 (474)
Q Consensus 179 ~~l~~~----~~------------~--~~~vi~n~~-~~~f~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 234 (474)
+.+.+. .+ . ++.++|||. ++.|.+.... ....+++++
T Consensus 196 ~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~------------------- 256 (456)
T TIGR02400 196 RNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESL------------------- 256 (456)
T ss_pred HHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHc-------------------
Confidence 665432 12 1 267888884 4556443211 111222222
Q ss_pred CCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCcccc
Q 011969 235 EGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYL 314 (474)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (474)
.+++ +++++||+.+.||++.+++|+..+.++
T Consensus 257 ---------------------~~~~-vIl~VgRLd~~KGi~~ll~A~~~ll~~--------------------------- 287 (456)
T TIGR02400 257 ---------------------KGRK-LIIGVDRLDYSKGLPERLLAFERFLEE--------------------------- 287 (456)
T ss_pred ---------------------CCCe-EEEEccccccccCHHHHHHHHHHHHHh---------------------------
Confidence 1233 889999999999999999999998663
Q ss_pred CCC----EEEEEEe-----CCCChHHHHHHHHHc--------CC---CcEEEecCCCCcccHHHHHhcccEEEeeccCCC
Q 011969 315 YPR----LLFIITG-----KGPDKESYEEKIRRL--------RL---KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS 374 (474)
Q Consensus 315 ~~~----~~l~ivG-----~g~~~~~~~~~~~~l--------~l---~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~ 374 (474)
+|+ +.|+++| ++++.+++++.++++ +. ..|.+++..++.+++..+|+.||++|+ +|.
T Consensus 288 ~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv---~S~ 364 (456)
T TIGR02400 288 HPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLV---TPL 364 (456)
T ss_pred CccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEE---Ccc
Confidence 454 5677774 445556666666654 11 125666655899999999999999999 788
Q ss_pred CCCCchHHHHHHhcCCc----EEEecccccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 375 GLDLPMKVVDMFGCGLP----VCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 375 ~e~~p~kv~Eama~G~P----Via~~~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
.||||++++||||||+| ||+|+.+|..+.+. +|++++ |+++++++|.++++. +++++++..+..++..
T Consensus 365 ~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l~---~gllVnP~d~~~lA~aI~~aL~~---~~~er~~r~~~~~~~v 438 (456)
T TIGR02400 365 RDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQELN---GALLVNPYDIDGMADAIARALTM---PLEEREERHRAMMDKL 438 (456)
T ss_pred ccccCccHHHHHHhcCCCCceEEEeCCCCChHHhC---CcEEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHH
Confidence 99999999999999999 99999888877773 788986 799999999999986 5677777777777766
Q ss_pred cccchHH
Q 011969 449 LSARWAT 455 (474)
Q Consensus 449 ~~~~w~~ 455 (474)
.++++..
T Consensus 439 ~~~~~~~ 445 (456)
T TIGR02400 439 RKNDVQR 445 (456)
T ss_pred hhCCHHH
Confidence 5666644
No 80
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.83 E-value=2.6e-18 Score=177.34 Aligned_cols=327 Identities=18% Similarity=0.172 Sum_probs=194.1
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHH
Q 011969 6 RACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPL 85 (474)
Q Consensus 6 ~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (474)
+++|...| -||.--....+..|.+. ++++.+++..+.....+... .++.++.++ ..+ +...+..+.+.+
T Consensus 3 ki~i~~Gg-t~G~i~~a~l~~~L~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~-----~~g---~~~~~~~~~~~~ 71 (380)
T PRK00025 3 RIAIVAGE-VSGDLLGAGLIRALKAR-APNLEFVGVGGPRMQAAGCE-SLFDMEELA-----VMG---LVEVLPRLPRLL 71 (380)
T ss_pred eEEEEecC-cCHHHHHHHHHHHHHhc-CCCcEEEEEccHHHHhCCCc-cccCHHHhh-----hcc---HHHHHHHHHHHH
Confidence 45555444 44433222356666664 88999998665432222222 233333333 111 111222221111
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhh
Q 011969 86 IQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGK 165 (474)
Q Consensus 86 ~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 165 (474)
.... .+...+ +..+||+||++..+.++..+ +.. ++..++|+++..++..+ .... . .. +.+.+
T Consensus 72 ~~~~-~~~~~l-~~~kPdivi~~~~~~~~~~~-a~~-a~~~~ip~i~~~~~~~~-------~~~~---~---~~-~~~~~ 133 (380)
T PRK00025 72 KIRR-RLKRRL-LAEPPDVFIGIDAPDFNLRL-EKK-LRKAGIPTIHYVSPSVW-------AWRQ---G---RA-FKIAK 133 (380)
T ss_pred HHHH-HHHHHH-HHcCCCEEEEeCCCCCCHHH-HHH-HHHCCCCEEEEeCCchh-------hcCc---h---HH-HHHHH
Confidence 1111 111222 23789999998754444332 222 34458998887665311 0000 1 11 12357
Q ss_pred hcCEEEEeCHHHHHHHHHHhCCceEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhh
Q 011969 166 MANGCLCVTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFT 245 (474)
Q Consensus 166 ~ad~vi~vS~~~~~~l~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (474)
.+|.+++.++..++.+.+ .|.++.++.|...+...+.. .+...+.+++
T Consensus 134 ~~d~i~~~~~~~~~~~~~-~g~~~~~~G~p~~~~~~~~~--~~~~~~~~l~----------------------------- 181 (380)
T PRK00025 134 ATDHVLALFPFEAAFYDK-LGVPVTFVGHPLADAIPLLP--DRAAARARLG----------------------------- 181 (380)
T ss_pred HHhhheeCCccCHHHHHh-cCCCeEEECcCHHHhccccc--ChHHHHHHcC-----------------------------
Confidence 889999999998888766 46664444333222221111 2234444554
Q ss_pred cccccccccCCCCCeEEEEEeecccC--CCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEE
Q 011969 246 SLAGIDVFLKPNRPALVVSSTSWTPD--EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT 323 (474)
Q Consensus 246 ~~~~~~~~~~~~~~~~i~~~G~l~~~--k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv 323 (474)
++++++.++++.|+-... +..+.+++++..+.++ .|+++++++
T Consensus 182 --------~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~---------------------------~~~~~~ii~ 226 (380)
T PRK00025 182 --------LDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQR---------------------------YPDLRFVLP 226 (380)
T ss_pred --------CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHh---------------------------CCCeEEEEe
Confidence 334556455666643322 4468888999888663 678999999
Q ss_pred eC-CCChHHHHHHHHHc-CCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEe------
Q 011969 324 GK-GPDKESYEEKIRRL-RLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV------ 395 (474)
Q Consensus 324 G~-g~~~~~~~~~~~~l-~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~------ 395 (474)
|+ ++..+++++.++++ ++. +.+. .+++..+|+.||++++ +| |...+|||+||+|+|++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~-v~~~-----~~~~~~~~~~aDl~v~---~s-----G~~~lEa~a~G~PvI~~~~~~~~ 292 (380)
T PRK00025 227 LVNPKRREQIEEALAEYAGLE-VTLL-----DGQKREAMAAADAALA---AS-----GTVTLELALLKVPMVVGYKVSPL 292 (380)
T ss_pred cCChhhHHHHHHHHhhcCCCC-eEEE-----cccHHHHHHhCCEEEE---Cc-----cHHHHHHHHhCCCEEEEEccCHH
Confidence 86 55567788877777 553 5443 3589999999999999 34 56778999999999987
Q ss_pred -----------cccccccccccCC--cEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011969 396 -----------SYSCIEELVKVDK--NGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 446 (474)
Q Consensus 396 -----------~~~~~~e~v~~~~--~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 446 (474)
+.+++++++.++. .|++.+ |++++++++..++++ ++.+++|++++.+
T Consensus 293 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~----~~~~~~~~~~~~~ 354 (380)
T PRK00025 293 TFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLAD----GARRQALLEGFTE 354 (380)
T ss_pred HHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcC----HHHHHHHHHHHHH
Confidence 3445566665543 445554 689999999999984 8899999998754
No 81
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.83 E-value=3.4e-18 Score=178.39 Aligned_cols=254 Identities=12% Similarity=0.175 Sum_probs=173.6
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (474)
.+||+|+++.| .+.+ .....++..++|++....|+. .. . +++.+.+|.+++.|+.+++
T Consensus 103 ~kPDvVi~~~p--~~~~-~~l~~~~~~~iP~~~v~td~~-------~~-~-----------~w~~~~~d~~~v~s~~~~~ 160 (391)
T PRK13608 103 EKPDLILLTFP--TPVM-SVLTEQFNINIPVATVMTDYR-------LH-K-----------NWITPYSTRYYVATKETKQ 160 (391)
T ss_pred hCcCEEEECCc--HHHH-HHHHHhcCCCCCEEEEeCCCC-------cc-c-----------ccccCCCCEEEECCHHHHH
Confidence 79999999765 2222 111122334788765555541 11 1 1234789999999999999
Q ss_pred HHHHHhCCc---eEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCC
Q 011969 180 ELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKP 256 (474)
Q Consensus 180 ~l~~~~~~~---~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (474)
.+.+. |.+ +.++.++..+.|.+.. .+...+.+++ +++
T Consensus 161 ~l~~~-gi~~~ki~v~GiPv~~~f~~~~--~~~~~~~~~~-------------------------------------l~~ 200 (391)
T PRK13608 161 DFIDV-GIDPSTVKVTGIPIDNKFETPI--DQKQWLIDNN-------------------------------------LDP 200 (391)
T ss_pred HHHHc-CCCHHHEEEECeecChHhcccc--cHHHHHHHcC-------------------------------------CCC
Confidence 98774 654 5555444434444322 1233444554 345
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEE-eCCCChHHHHHH
Q 011969 257 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT-GKGPDKESYEEK 335 (474)
Q Consensus 257 ~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv-G~g~~~~~~~~~ 335 (474)
+.+.+++++|+++..|+++.+++++.. . .++++++++ |.++ +..++.
T Consensus 201 ~~~~ilv~~G~lg~~k~~~~li~~~~~--~----------------------------~~~~~~vvv~G~~~--~l~~~l 248 (391)
T PRK13608 201 DKQTILMSAGAFGVSKGFDTMITDILA--K----------------------------SANAQVVMICGKSK--ELKRSL 248 (391)
T ss_pred CCCEEEEECCCcccchhHHHHHHHHHh--c----------------------------CCCceEEEEcCCCH--HHHHHH
Confidence 667678899999988999999998532 1 367788655 4432 212233
Q ss_pred HHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec-ccc----cccccccCCc
Q 011969 336 IRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSC----IEELVKVDKN 409 (474)
Q Consensus 336 ~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~-~~~----~~e~v~~~~~ 409 (474)
.+.++. ++|.|+|. .++++.+|+.||++|. .+ .|+++.|||+||+|+|+++ .++ ...++.+.+.
T Consensus 249 ~~~~~~~~~v~~~G~---~~~~~~~~~~aDl~I~---k~----gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~ 318 (391)
T PRK13608 249 TAKFKSNENVLILGY---TKHMNEWMASSQLMIT---KP----GGITISEGLARCIPMIFLNPAPGQELENALYFEEKGF 318 (391)
T ss_pred HHHhccCCCeEEEec---cchHHHHHHhhhEEEe---CC----chHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCc
Confidence 333333 58999998 4789999999999997 22 3679999999999999986 333 2234456778
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHH
Q 011969 410 GLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHA 461 (474)
Q Consensus 410 G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 461 (474)
|+...|+++++++|..++++ ++.+++|++++++....++|+...+.+.
T Consensus 319 g~~~~~~~~l~~~i~~ll~~----~~~~~~m~~~~~~~~~~~s~~~i~~~l~ 366 (391)
T PRK13608 319 GKIADTPEEAIKIVASLTNG----NEQLTNMISTMEQDKIKYATQTICRDLL 366 (391)
T ss_pred EEEeCCHHHHHHHHHHHhcC----HHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 88888999999999999984 8899999999999887788876665543
No 82
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.81 E-value=8.4e-17 Score=159.59 Aligned_cols=366 Identities=18% Similarity=0.254 Sum_probs=234.0
Q ss_pred CCCchHHHHHHHHH-hhCCCeEEEEecCCCC-CCcc-----------eeccCCeEEEEeecCC-CCCCCCCchhHHHHHH
Q 011969 16 GRSPRMQYQALSLA-RQMSLEVDVVAYGGSK-PHAA-----------ILEHPSIHIHTMTQWP-TIPRGLPKVLKPVLLL 81 (474)
Q Consensus 16 g~~~r~~~~a~~l~-~~~g~eV~Vv~~~~~~-~~~~-----------~~~~~gi~i~~~~~~~-~~~~~~~~~~~~~~~~ 81 (474)
||..|+.--|.... ++--..+.||..++.. ...+ .++.++|.++.+.... ..-+.+++ +..+
T Consensus 57 GGGErVLW~Avr~~q~k~~n~~~viYsGD~n~t~~~IL~k~k~~F~idlDs~nI~Fi~Lk~R~lVea~~~~h----fTll 132 (465)
T KOG1387|consen 57 GGGERVLWKAVRITQRKFPNNVIVIYSGDFNVTPENILNKVKNKFDIDLDSDNIFFIYLKLRYLVEASTWKH----FTLL 132 (465)
T ss_pred CCcceehhHHHHHHHHhCCCceEEEEeCCCCCCHHHHHHHHHHhcCceecccceEEEEEEeeeeeecccccc----eehH
Confidence 56678776665444 4322344444433311 1111 2345688888887321 01111222 2222
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCch-hhhhhhccC--CCchH------
Q 011969 82 LKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFG-YTLLSLSLG--RRSHF------ 152 (474)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~-~~~~~~~~~--~~~~~------ 152 (474)
...+.....-+-.+++ -.||+.+-+-...+. .. ..+++.++|++...|-.. .+++-..+. ..+.+
T Consensus 133 gQaigsmIl~~Eai~r--~~Pdi~IDtMGY~fs-~p---~~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~s~~l~~~Kl 206 (465)
T KOG1387|consen 133 GQAIGSMILAFEAIIR--FPPDIFIDTMGYPFS-YP---IFRRLRRIPVVAYVHYPTISTDMLKKLFQRQKSGILVWGKL 206 (465)
T ss_pred HHHHHHHHHHHHHHHh--CCchheEecCCCcch-hH---HHHHHccCceEEEEecccccHHHHHHHHhhhhcchhhhHHH
Confidence 2222221111222232 679998765432221 11 235588999999999653 112111111 01101
Q ss_pred --HHHHHHHHHHHhhhcCEEEEeCHHHHHHHHHHhCCc-eEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccc
Q 011969 153 --VSIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCV 229 (474)
Q Consensus 153 --~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~-~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 229 (474)
.+++..+-+.+...||.+.+.|.++++.+.+-|+.. +.++| .|.+.++-.. ..+
T Consensus 207 aY~rlFa~lY~~~G~~ad~vm~NssWT~nHI~qiW~~~~~~iVy-------PPC~~e~lks---~~~------------- 263 (465)
T KOG1387|consen 207 AYWRLFALLYQSAGSKADIVMTNSSWTNNHIKQIWQSNTCSIVY-------PPCSTEDLKS---KFG------------- 263 (465)
T ss_pred HHHHHHHHHHHhccccceEEEecchhhHHHHHHHhhccceeEEc-------CCCCHHHHHH---Hhc-------------
Confidence 133344455566789999999999999999998765 45543 3444332111 111
Q ss_pred cccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcC
Q 011969 230 SNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISD 309 (474)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (474)
....+...++++|++.|.|+.. +++.++....+ +- +
T Consensus 264 ------------------------te~~r~~~ll~l~Q~RPEKnH~-~Lql~Al~~~~------~p-------------l 299 (465)
T KOG1387|consen 264 ------------------------TEGERENQLLSLAQFRPEKNHK-ILQLFALYLKN------EP-------------L 299 (465)
T ss_pred ------------------------ccCCcceEEEEEeecCcccccH-HHHHHHHHHhc------Cc-------------h
Confidence 1133455899999999999999 55665554331 00 0
Q ss_pred CccccCCCEEEEEEeCCCCh------HHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHH
Q 011969 310 GKQYLYPRLLFIITGKGPDK------ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKV 382 (474)
Q Consensus 310 ~~~~~~~~~~l~ivG~g~~~------~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv 382 (474)
....++++|+|+|+...+ ..++..++.|.+ ++|.|.-- +|.+++..+|+.|.++|. .=..|.||..+
T Consensus 300 --~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N-~Py~~lv~lL~~a~iGvh---~MwNEHFGIsV 373 (465)
T KOG1387|consen 300 --EASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKN-VPYEKLVELLGKATIGVH---TMWNEHFGISV 373 (465)
T ss_pred --hhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEec-CCHHHHHHHhccceeehh---hhhhhhcchhH
Confidence 012467999999976332 446677888888 68999976 999999999999999998 55889999999
Q ss_pred HHHHhcCCcEEEecccc-cccccccC---CcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc---cccchHH
Q 011969 383 VDMFGCGLPVCAVSYSC-IEELVKVD---KNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG---LSARWAT 455 (474)
Q Consensus 383 ~Eama~G~PVia~~~~~-~~e~v~~~---~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~w~~ 455 (474)
+||||+|+-.|+.+.|| .-++|.+. .+|++.++.++.++++.++.+. +.+++..||+++++.. ++..+++
T Consensus 374 VEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~t~~EYaE~iLkIv~~---~~~~r~~~r~~AR~s~~RFsE~~F~k 450 (465)
T KOG1387|consen 374 VEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAPTDEEYAEAILKIVKL---NYDERNMMRRNARKSLARFGELKFDK 450 (465)
T ss_pred HHHHhcCceEEEeCCCCCceeeeeccCCccceeecCChHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999888887544 45777653 4899999999999999999997 7888999999998654 4567899
Q ss_pred HHHHHHHHHHHH
Q 011969 456 EWEEHAKPLITE 467 (474)
Q Consensus 456 ~~~~~~~~~~~~ 467 (474)
.|+..+.++++|
T Consensus 451 d~~~~i~kll~e 462 (465)
T KOG1387|consen 451 DWENPICKLLEE 462 (465)
T ss_pred hHhHHHHHhhcc
Confidence 999888888775
No 83
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.80 E-value=1.6e-16 Score=168.59 Aligned_cols=292 Identities=17% Similarity=0.127 Sum_probs=206.1
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHh----hCCCcEEEEecCchhhhhhh--ccC-CCchHHHHHH----------HHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASS----LRRSAFIVDWHNFGYTLLSL--SLG-RRSHFVSIYR----------WIEKY 162 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~h~~~~~~~~~--~~~-~~~~~~~~~~----------~~e~~ 162 (474)
..||+||+|+ ..+.++..+++. ...+|.|+|+|++.|.-... ... ..-++ ..+. .+.|.
T Consensus 129 ~~pDIvH~hD---Wqt~L~~~~lk~~~~~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~-~~~~~~~l~~~~~~~~lK~ 204 (487)
T COG0297 129 WLPDIVHAHD---WQTGLLPAYLKQRYRSGYIIPTVFTIHNLAYQGLFRLQYLEELGLPF-EAYASFGLEFYGQISFLKG 204 (487)
T ss_pred CCCCEEEeec---HHHHHHHHHHhhcccccccCCeEEEEeeceeecccchhhHHHhcCCH-HHhhhceeeecCcchhhhh
Confidence 4799999999 555555555555 45789999999986422210 000 00111 1111 44566
Q ss_pred HhhhcCEEEEeCHHHHHHHHHH-hC-----------CceEEEeCC-CCCCCCCCChH----------------HHHHHHH
Q 011969 163 YGKMANGCLCVTQAMQHELAQN-WG-----------IKATVLYDQ-PPEFFHPTSLE----------------EKHELFC 213 (474)
Q Consensus 163 ~~~~ad~vi~vS~~~~~~l~~~-~~-----------~~~~vi~n~-~~~~f~~~~~~----------------~~~~~~~ 213 (474)
-...||.|.+||...++++... +| .+..-|.|+ +.+.+.|.... .+..+.+
T Consensus 205 gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~ 284 (487)
T COG0297 205 GLYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQE 284 (487)
T ss_pred hheeccEEEEECHHHHHhhccccccccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHH
Confidence 6679999999999998887722 22 125667776 33445544321 1222333
Q ss_pred hhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhc
Q 011969 214 RLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILN 293 (474)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~ 293 (474)
++|+ ....+.| ++.++||++.+||++.+++++..+.+.
T Consensus 285 ~~gL-----------------------------------~~~~~~p-l~~~vsRl~~QKG~dl~~~~i~~~l~~------ 322 (487)
T COG0297 285 RLGL-----------------------------------DVDLPGP-LFGFVSRLTAQKGLDLLLEAIDELLEQ------ 322 (487)
T ss_pred HhCC-----------------------------------CCCCCCc-EEEEeeccccccchhHHHHHHHHHHHh------
Confidence 3331 1123445 999999999999999999999998873
Q ss_pred cCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeecc
Q 011969 294 EDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHT 371 (474)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~ 371 (474)
.+.+++.|.|.. ++.+...++++.. ++.+.-. .+..-...++..||++++
T Consensus 323 -----------------------~~~~vilG~gd~~le~~~~~la~~~~~-~~~~~i~-~~~~la~~i~agaD~~lm--- 374 (487)
T COG0297 323 -----------------------GWQLVLLGTGDPELEEALRALASRHPG-RVLVVIG-YDEPLAHLIYAGADVILM--- 374 (487)
T ss_pred -----------------------CceEEEEecCcHHHHHHHHHHHHhcCc-eEEEEee-ecHHHHHHHHhcCCEEEe---
Confidence 489999999932 2445555555543 4444433 788888999999999999
Q ss_pred CCCCCCCchHHHHHHhcCCcEEEeccccccccccc--------CCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 011969 372 SSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKV--------DKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLR 441 (474)
Q Consensus 372 ~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~--------~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~ 441 (474)
||++|+||..=++||..|++.|+...||.++.|.+ ..+|+++. ++++++.+|.+.+.-+..++...+.+.
T Consensus 375 PSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~~w~~~~ 454 (487)
T COG0297 375 PSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPLLWRKVQ 454 (487)
T ss_pred CCcCcCCcHHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 79999999999999999999999999999999975 47999995 799999999998876665566688888
Q ss_pred HHHHHhccccchHHHHHHHHHHHHHHH
Q 011969 442 NGTLEMGLSARWATEWEEHAKPLITEV 468 (474)
Q Consensus 442 ~~~~~~~~~~~w~~~~~~~~~~~~~~~ 468 (474)
.++.. ..++|+...++. ..+++.+
T Consensus 455 ~~~m~--~d~sw~~sa~~y-~~lY~~~ 478 (487)
T COG0297 455 PNAMG--ADFSWDLSAKEY-VELYKPL 478 (487)
T ss_pred Hhhcc--cccCchhHHHHH-HHHHHHH
Confidence 88877 478898777553 3344433
No 84
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.79 E-value=1.4e-17 Score=171.64 Aligned_cols=268 Identities=16% Similarity=0.130 Sum_probs=172.2
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHH-HHHHhhhcCEEEEeCHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWI-EKYYGKMANGCLCVTQAMQ 178 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~~ad~vi~vS~~~~ 178 (474)
.+||+||+|+.. ...+++.++++..++|++...++. . +.+...++.. .. ...+.+.||.++++|+..+
T Consensus 85 ~~pDiv~~~gd~--~~~la~a~aa~~~~ipv~h~~~g~-~-----s~~~~~~~~~---~~~r~~~~~~ad~~~~~s~~~~ 153 (365)
T TIGR00236 85 EKPDIVLVQGDT--TTTLAGALAAFYLQIPVGHVEAGL-R-----TGDRYSPMPE---EINRQLTGHIADLHFAPTEQAK 153 (365)
T ss_pred cCCCEEEEeCCc--hHHHHHHHHHHHhCCCEEEEeCCC-C-----cCCCCCCCcc---HHHHHHHHHHHHhccCCCHHHH
Confidence 789999999753 334457778888899976433322 1 0111111110 11 1223456899999999999
Q ss_pred HHHHHHhCCc---eEEEeCCC-CCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccccccccc
Q 011969 179 HELAQNWGIK---ATVLYDQP-PEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFL 254 (474)
Q Consensus 179 ~~l~~~~~~~---~~vi~n~~-~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (474)
+.+.+. |.+ +.++.|+. +..+.+........++++++
T Consensus 154 ~~l~~~-G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~~-------------------------------------- 194 (365)
T TIGR00236 154 DNLLRE-NVKADSIFVTGNTVIDALLTNVEIAYSSPVLSEFG-------------------------------------- 194 (365)
T ss_pred HHHHHc-CCCcccEEEeCChHHHHHHHHHhhccchhHHHhcC--------------------------------------
Confidence 999874 654 67777763 22111111001122222222
Q ss_pred CCCCCeEEEEEe-ec-ccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHH
Q 011969 255 KPNRPALVVSST-SW-TPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 332 (474)
Q Consensus 255 ~~~~~~~i~~~G-~l-~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~ 332 (474)
.+.+ ++++++ +. ...|+++.+++|+..+.++ .|+++++++|.+... ..
T Consensus 195 -~~~~-~vl~~~hr~~~~~k~~~~ll~a~~~l~~~---------------------------~~~~~~vi~~~~~~~-~~ 244 (365)
T TIGR00236 195 -EDKR-YILLTLHRRENVGEPLENIFKAIREIVEE---------------------------FEDVQIVYPVHLNPV-VR 244 (365)
T ss_pred -CCCC-EEEEecCchhhhhhHHHHHHHHHHHHHHH---------------------------CCCCEEEEECCCChH-HH
Confidence 2233 444444 43 2458999999999988663 578889888654322 12
Q ss_pred HHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEe-cccccccccccCCcE
Q 011969 333 EEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV-SYSCIEELVKVDKNG 410 (474)
Q Consensus 333 ~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~-~~~~~~e~v~~~~~G 410 (474)
.+..+.++. ++|.|++. ++..++..+++.||+++. +| |..++|||+||+|||++ +.++..+++..+ .|
T Consensus 245 ~~~~~~~~~~~~v~~~~~-~~~~~~~~~l~~ad~vv~---~S-----g~~~~EA~a~g~PvI~~~~~~~~~e~~~~g-~~ 314 (365)
T TIGR00236 245 EPLHKHLGDSKRVHLIEP-LEYLDFLNLAANSHLILT---DS-----GGVQEEAPSLGKPVLVLRDTTERPETVEAG-TN 314 (365)
T ss_pred HHHHHHhCCCCCEEEECC-CChHHHHHHHHhCCEEEE---CC-----hhHHHHHHHcCCCEEECCCCCCChHHHhcC-ce
Confidence 223444555 68999998 889999999999999987 44 34689999999999996 567888888755 45
Q ss_pred EEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Q 011969 411 LLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLI 465 (474)
Q Consensus 411 ~l~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 465 (474)
.+++ |++++++++..++++ ++.+++++++...+... ..++++++.+.
T Consensus 315 ~lv~~d~~~i~~ai~~ll~~----~~~~~~~~~~~~~~g~~----~a~~ri~~~l~ 362 (365)
T TIGR00236 315 KLVGTDKENITKAAKRLLTD----PDEYKKMSNASNPYGDG----EASERIVEELL 362 (365)
T ss_pred EEeCCCHHHHHHHHHHHHhC----hHHHHHhhhcCCCCcCc----hHHHHHHHHHH
Confidence 5554 899999999999984 77888887766443322 34455554443
No 85
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.78 E-value=1.5e-17 Score=170.16 Aligned_cols=247 Identities=16% Similarity=0.095 Sum_probs=167.2
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (474)
.+||+||+|+.. ...+++.++++..++|++...|+.. + .....+.. +....+.+.+|.+++.|+..++
T Consensus 87 ~~pDvV~~~g~~--~~~~~~~~aa~~~~iPvv~~~~g~~-s-----~~~~~~~~----~~r~~~~~~ad~~~~~s~~~~~ 154 (363)
T cd03786 87 EKPDLVLVLGDT--NETLAAALAAFKLGIPVAHVEAGLR-S-----FDRGMPDE----ENRHAIDKLSDLHFAPTEEARR 154 (363)
T ss_pred hCCCEEEEeCCc--hHHHHHHHHHHHcCCCEEEEecccc-c-----CCCCCCch----HHHHHHHHHhhhccCCCHHHHH
Confidence 689999999743 2333466677778999887655531 0 00111111 1222355788999999999999
Q ss_pred HHHHHhCCc---eEEEeCCCCCCC--CCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccccccccc
Q 011969 180 ELAQNWGIK---ATVLYDQPPEFF--HPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFL 254 (474)
Q Consensus 180 ~l~~~~~~~---~~vi~n~~~~~f--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (474)
++.+. |.+ +.++.|+..+.+ .+... .....+..++ +
T Consensus 155 ~l~~~-G~~~~kI~vign~v~d~~~~~~~~~-~~~~~~~~~~-------------------------------------~ 195 (363)
T cd03786 155 NLLQE-GEPPERIFVVGNTMIDALLRLLELA-KKELILELLG-------------------------------------L 195 (363)
T ss_pred HHHHc-CCCcccEEEECchHHHHHHHHHHhh-ccchhhhhcc-------------------------------------c
Confidence 98764 654 666666532111 10000 0000111111 2
Q ss_pred CCCCCeEEEEEeeccc---CCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHH
Q 011969 255 KPNRPALVVSSTSWTP---DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKES 331 (474)
Q Consensus 255 ~~~~~~~i~~~G~l~~---~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~ 331 (474)
++.+++++++|+... .|+++.+++|++.+.+ +++.+++.|.++..+.
T Consensus 196 -~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~-----------------------------~~~~vi~~~~~~~~~~ 245 (363)
T cd03786 196 -LPKKYILVTLHRVENVDDGEQLEEILEALAELAE-----------------------------EDVPVVFPNHPRTRPR 245 (363)
T ss_pred -CCCCEEEEEeCCccccCChHHHHHHHHHHHHHHh-----------------------------cCCEEEEECCCChHHH
Confidence 345557788898875 7999999999998754 2577888787777788
Q ss_pred HHHHHHHcCC--CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc-cccccccccCC
Q 011969 332 YEEKIRRLRL--KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY-SCIEELVKVDK 408 (474)
Q Consensus 332 ~~~~~~~l~l--~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~-~~~~e~v~~~~ 408 (474)
+++.++++++ ++|.|.|. .+.+++..+|+.||++|. +|.+ .+.|||++|+|||+++. ++..+.++.+
T Consensus 246 l~~~~~~~~~~~~~v~~~~~-~~~~~~~~l~~~ad~~v~---~Sgg-----i~~Ea~~~g~PvI~~~~~~~~~~~~~~g- 315 (363)
T cd03786 246 IREAGLEFLGHHPNVLLISP-LGYLYFLLLLKNADLVLT---DSGG-----IQEEASFLGVPVLNLRDRTERPETVESG- 315 (363)
T ss_pred HHHHHHhhccCCCCEEEECC-cCHHHHHHHHHcCcEEEE---cCcc-----HHhhhhhcCCCEEeeCCCCccchhhhee-
Confidence 9988888875 68999987 778999999999999998 4432 47899999999999974 5566666444
Q ss_pred cEEEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 011969 409 NGLLFS-SSSELADQLLMLFKGFPDDSDVLKKLR 441 (474)
Q Consensus 409 ~G~l~~-~~~~la~~i~~l~~~~~~~~~~~~~~~ 441 (474)
.+..+. |+++++++|..++++ +..+++|+
T Consensus 316 ~~~~~~~~~~~i~~~i~~ll~~----~~~~~~~~ 345 (363)
T cd03786 316 TNVLVGTDPEAILAAIEKLLSD----EFAYSLMS 345 (363)
T ss_pred eEEecCCCHHHHHHHHHHHhcC----chhhhcCC
Confidence 344444 699999999999985 55555554
No 86
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.78 E-value=1.1e-17 Score=175.48 Aligned_cols=293 Identities=19% Similarity=0.188 Sum_probs=190.8
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCC----CcEEEEecCchhhhhhhccCCCchH-HHHHHHHHHHHhhhcCEEEEeC
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRR----SAFIVDWHNFGYTLLSLSLGRRSHF-VSIYRWIEKYYGKMANGCLCVT 174 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~h~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~ad~vi~vS 174 (474)
.+.|+++... . ....++...+.+ .++.+++|... ..++...+-...+ ....-+++......++.+++-|
T Consensus 144 ~~~d~~i~d~---~--~~~~~l~~~~~~p~~~~~i~~~~h~~~-~lla~r~g~~~~l~~~~l~~~e~e~~~~~~~~~~ns 217 (495)
T KOG0853|consen 144 EKVDPIIEDF---V--SACVPLLKQLSGPDVIIKIYFYCHFPD-SLLAKRLGVLKVLYRHALDKIEEETTGLAWKILVNS 217 (495)
T ss_pred hhhceeecch---H--HHHHHHHHHhcCCcccceeEEeccchH-HHhccccCccceeehhhhhhhhhhhhhccceEecch
Confidence 4577776655 2 222444455553 55667888763 2332222211111 2233455666667889999999
Q ss_pred HHHHHHHHHHhC----CceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccc
Q 011969 175 QAMQHELAQNWG----IKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAG 249 (474)
Q Consensus 175 ~~~~~~l~~~~~----~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (474)
...+..++.... .++++.+-..+ ..+.+.--+...++..... ..++
T Consensus 218 ~~~~~~f~~~~~~L~~~d~~~~y~ei~~s~~~~~~~~~~~~~~~~~r--~~~~--------------------------- 268 (495)
T KOG0853|consen 218 YFTKRQFKATFVSLSNSDITSTYPEIDGSWFTYGQYESHLELRLPVR--LYRG--------------------------- 268 (495)
T ss_pred hhhhhhhhhhhhhcCCCCcceeeccccchhccccccccchhcccccc--eeee---------------------------
Confidence 988877765431 12444444433 2222210000111111100 0000
Q ss_pred cccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCC-CC
Q 011969 250 IDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PD 328 (474)
Q Consensus 250 ~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g-~~ 328 (474)
-.+...++..+-++.+.||++.+++++..+... |.+ ...++.+++++|+. .+
T Consensus 269 -----v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~-------------------i~~---~~~~~~hl~~~g~~G~d 321 (495)
T KOG0853|consen 269 -----VSGIDRFFPSINRFEPGKDQDLALPAFTLLHDS-------------------IPE---PSISSEHLVVAGSRGYD 321 (495)
T ss_pred -----ecccceEeeeeeecCCCCCceeehhhHHhhhcc-------------------cCC---CCCCceEEEEecCCCcc
Confidence 112233777888999999999999999988763 111 12367889999832 11
Q ss_pred ---------hHHHHHHHHHcCC--CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc
Q 011969 329 ---------KESYEEKIRRLRL--KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 397 (474)
Q Consensus 329 ---------~~~~~~~~~~l~l--~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~ 397 (474)
..++.++++++++ +.|.|+.. ..+...|...||......+|.. |.||.+.+|||+||+||+|++.
T Consensus 322 ~~~sen~~~~~el~~lie~~~l~g~~v~~~~s---~~~~~~yrl~adt~~v~~qPa~-E~FGiv~IEAMa~glPvvAt~~ 397 (495)
T KOG0853|consen 322 ERDSENVEYLKELLSLIEEYDLLGQFVWFLPS---TTRVAKYRLAADTKGVLYQPAN-EHFGIVPIEAMACGLPVVATNN 397 (495)
T ss_pred ccchhhHHHHHHHHHHHHHhCccCceEEEecC---CchHHHHHHHHhcceEEecCCC-CCccceeHHHHhcCCCEEEecC
Confidence 1567888999988 57888766 5555667777777777666666 9999999999999999999999
Q ss_pred cccccccccCCcEEEeC-CHH---HHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccc-cchHHHHHHHHH
Q 011969 398 SCIEELVKVDKNGLLFS-SSS---ELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLS-ARWATEWEEHAK 462 (474)
Q Consensus 398 ~~~~e~v~~~~~G~l~~-~~~---~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~w~~~~~~~~~ 462 (474)
||..|+|.++.+|++++ +.+ .+++++.++..+ ++.+.+|++++++...+ |+|...-++++.
T Consensus 398 GGP~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~----p~l~~~~~~~G~~rV~e~fs~~~~~~ri~~ 463 (495)
T KOG0853|consen 398 GGPAEIVVHGVTGLLIDPGQEAVAELADALLKLRRD----PELWARMGKNGLKRVKEMFSWQHYSERIAS 463 (495)
T ss_pred CCceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999997 444 699999999984 99999999999987744 999554444433
No 87
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.78 E-value=9.2e-18 Score=188.94 Aligned_cols=277 Identities=9% Similarity=0.043 Sum_probs=184.5
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHh-hCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASS-LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (474)
..-|+|.+|... .+++...++. ....++.+.+|-...+..- .+.-|.. +.+-+-+ -.||.|-..|....
T Consensus 146 ~~~d~vWvhDYh---L~llp~~lR~~~~~~~igfFlHiPFPs~e~---fr~lp~r---~~il~gl-l~aDligF~t~~y~ 215 (797)
T PLN03063 146 EEGDVVWCHDYH---LMFLPQYLKEYNNKMKVGWFLHTPFPSSEI---YKTLPSR---SELLRAV-LTADLIGFHTYDFA 215 (797)
T ss_pred CCCCEEEEecch---hhhHHHHHHHhCCCCcEEEEecCCCCCHHH---HhhCCCH---HHHHHHH-hcCCEEEeCCHHHH
Confidence 456899999943 3333444444 4567888889976321110 0111111 1111111 25777777777666
Q ss_pred HHHHHH----h------------C--CceEEEeCCCC-CCCCCCCh-HH----HHHHHHhhhhccCCCCCcccccccccc
Q 011969 179 HELAQN----W------------G--IKATVLYDQPP-EFFHPTSL-EE----KHELFCRLNKILHQPLGVQDCVSNAGM 234 (474)
Q Consensus 179 ~~l~~~----~------------~--~~~~vi~n~~~-~~f~~~~~-~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~ 234 (474)
+.+.+. . | .++.++|+|.+ +.|.+... .+ ...+++++
T Consensus 216 r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~------------------- 276 (797)
T PLN03063 216 RHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFF------------------- 276 (797)
T ss_pred HHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhc-------------------
Confidence 655431 1 1 22678888844 45543311 01 11122221
Q ss_pred CCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCcccc
Q 011969 235 EGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYL 314 (474)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (474)
.+++ +|+++||+.+.||++.+++|+..+.++
T Consensus 277 ---------------------~~~~-lIl~VgRLd~~KGi~~lL~Afe~lL~~--------------------------- 307 (797)
T PLN03063 277 ---------------------AGRK-VILGVDRLDMIKGIPQKYLAFEKFLEE--------------------------- 307 (797)
T ss_pred ---------------------CCCe-EEEEecccccccCHHHHHHHHHHHHHh---------------------------
Confidence 1233 889999999999999999999998763
Q ss_pred CCCE----EEEEEe-----CCCChHHHHHHHHHcC--CC---------cEEEecCCCCcccHHHHHhcccEEEeeccCCC
Q 011969 315 YPRL----LFIITG-----KGPDKESYEEKIRRLR--LK---------RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS 374 (474)
Q Consensus 315 ~~~~----~l~ivG-----~g~~~~~~~~~~~~l~--l~---------~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~ 374 (474)
+|++ .|+.++ ++++.+++++.++++. ++ -|.+++..++.+++..+|+.||++|+ +|.
T Consensus 308 ~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvv---tSl 384 (797)
T PLN03063 308 NPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLV---TSL 384 (797)
T ss_pred CccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEe---Ccc
Confidence 5654 344333 4455566777776663 21 25555555899999999999999999 799
Q ss_pred CCCCchHHHHHHhcCCc----EEEecccccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 375 GLDLPMKVVDMFGCGLP----VCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 375 ~e~~p~kv~Eama~G~P----Via~~~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
.||+|++++||||||+| +|.|..+|..+.+ +.+|++++ |+++++++|..+++. +++++++..+..+++.
T Consensus 385 rEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l--~~~allVnP~D~~~lA~AI~~aL~m---~~~er~~r~~~~~~~v 459 (797)
T PLN03063 385 RDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL--GAGALLVNPWNITEVSSAIKEALNM---SDEERETRHRHNFQYV 459 (797)
T ss_pred ccccCcchhhHheeecCCCCCEEeeCCcCchhhh--cCCeEEECCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHHhh
Confidence 99999999999999999 9999988888865 55789986 799999999999995 5777777777777877
Q ss_pred cccchHHHHHHHHHH
Q 011969 449 LSARWATEWEEHAKP 463 (474)
Q Consensus 449 ~~~~w~~~~~~~~~~ 463 (474)
.+++|. .|.+.+..
T Consensus 460 ~~~~~~-~Wa~~fl~ 473 (797)
T PLN03063 460 KTHSAQ-KWADDFMS 473 (797)
T ss_pred hhCCHH-HHHHHHHH
Confidence 778876 46554433
No 88
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=3.2e-15 Score=145.34 Aligned_cols=280 Identities=24% Similarity=0.302 Sum_probs=190.6
Q ss_pred CCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCC-chHHH-HHHHHHHHHhhhcCEEEEeCHHHHH
Q 011969 102 PDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRR-SHFVS-IYRWIEKYYGKMANGCLCVTQAMQH 179 (474)
Q Consensus 102 ~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~-~~~~~-~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (474)
+|+++.+.....+..............+.+...|.............. ..... ............++.+++.+.....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (381)
T COG0438 84 YDIIHAHSLLLAPGGLLALLLLKLLGIPLVVTLHGLIPRILLLPRLLLLLGLLRLLLKRLKKALRLLADRVIAVSPALKE 163 (381)
T ss_pred cceeeccccccccchhHHHhhccccCCcEEEeecCCcccccccccchhhHHHHHHHHHHHHHhccccccEEEECCHHHHH
Confidence 588888765433321123334445567888888887421110000111 11111 1111122221247888999988866
Q ss_pred HHHHHhCC-ceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCC
Q 011969 180 ELAQNWGI-KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPN 257 (474)
Q Consensus 180 ~l~~~~~~-~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (474)
.+...... +..+++++.. +.+.+. .. .+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-------------------------------------~~~~~ 196 (381)
T COG0438 164 LLEALGVPNKIVVIPNGIDTEKFAPA----------RI-------------------------------------GLLPE 196 (381)
T ss_pred HHHHhCCCCCceEecCCcCHHHcCcc----------cc-------------------------------------CCCcc
Confidence 66554433 3666666633 222221 00 01122
Q ss_pred C-CeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC-hHHHHHH
Q 011969 258 R-PALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD-KESYEEK 335 (474)
Q Consensus 258 ~-~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~-~~~~~~~ 335 (474)
. ...++++|++.+.||++.+++++..+... .+++.++++|.++. .+.+.+.
T Consensus 197 ~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~---------------------------~~~~~~~~~g~~~~~~~~~~~~ 249 (381)
T COG0438 197 GGKFVVLYVGRLDPEKGLDLLIEAAAKLKKR---------------------------GPDIKLVIVGDGPERREELEKL 249 (381)
T ss_pred cCceEEEEeeccChhcCHHHHHHHHHHhhhh---------------------------cCCeEEEEEcCCCccHHHHHHH
Confidence 2 24899999999999999999999999773 45589999999987 3667778
Q ss_pred HHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEeC
Q 011969 336 IRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS 414 (474)
Q Consensus 336 ~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~ 414 (474)
+++++. ++|.|.|. ++.+++..+++.||++++ |+..|++|+.++|||++|+|||+++.++..+++.++.+|+++.
T Consensus 250 ~~~~~~~~~v~~~g~-~~~~~~~~~~~~~~~~v~---ps~~e~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~~~~g~~~~ 325 (381)
T COG0438 250 AKKLGLEDNVKFLGY-VPDEELAELLASADVFVL---PSLSEGFGLVLLEAMAAGTPVIASDVGGIPEVVEDGETGLLVP 325 (381)
T ss_pred HHHhCCCCcEEEecc-cCHHHHHHHHHhCCEEEe---ccccccchHHHHHHHhcCCcEEECCCCChHHHhcCCCceEecC
Confidence 888877 78999887 887889999999999999 5655999999999999999999999999999998887788665
Q ss_pred --CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHHHH
Q 011969 415 --SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHAKP 463 (474)
Q Consensus 415 --~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~ 463 (474)
+.+++++++..++++ ++.++.+.+.+.+.. ..++|+..++...+-
T Consensus 326 ~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (381)
T COG0438 326 PGDVEELADALEQLLED----PELREELGEAARERVEEEFSWERIAEQLLEL 373 (381)
T ss_pred CCCHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 489999999999985 566677776444433 578898877554433
No 89
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.69 E-value=3.3e-15 Score=167.63 Aligned_cols=161 Identities=12% Similarity=0.114 Sum_probs=121.0
Q ss_pred EEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCC----EEEEEEeCC-----CChHH
Q 011969 261 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPR----LLFIITGKG-----PDKES 331 (474)
Q Consensus 261 ~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~ivG~g-----~~~~~ 331 (474)
+++++||+.+.||+..+++|+..+.++ +|+ ++|+++|.+ ++.++
T Consensus 267 ~il~VgRl~~~Kgi~~~l~A~~~ll~~---------------------------~p~~~~~v~lv~v~~~sr~~~~~~~~ 319 (726)
T PRK14501 267 IILSIDRLDYTKGIPRRLLAFERFLEK---------------------------NPEWRGKVRLVQVAVPSRTGVPQYQE 319 (726)
T ss_pred EEEEecCcccccCHHHHHHHHHHHHHh---------------------------CccccCCEEEEEEecCCCcchHHHHH
Confidence 899999999999999999999988663 554 789888733 33344
Q ss_pred HHHHHHHc----C-------CCcE-EEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhc-----CCcEEE
Q 011969 332 YEEKIRRL----R-------LKRV-AFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGC-----GLPVCA 394 (474)
Q Consensus 332 ~~~~~~~l----~-------l~~V-~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~-----G~PVia 394 (474)
+++.++++ + ...| .|.|. ++.+++..+|+.||++++ +|..||||++++||||| |.||++
T Consensus 320 l~~~~~~~v~~in~~~~~~~~~pv~~~~~~-~~~~~l~~ly~~aDv~v~---~S~~EG~~lv~~Eama~~~~~~g~~vls 395 (726)
T PRK14501 320 MKREIDELVGRINGEFGTVDWTPIHYFYRS-LPFEELVALYRAADVALV---TPLRDGMNLVAKEYVASRTDGDGVLILS 395 (726)
T ss_pred HHHHHHHHHHHHHhhcCCCCcceEEEEeCC-CCHHHHHHHHHhccEEEe---cccccccCcccceEEEEcCCCCceEEEe
Confidence 54444443 1 1124 45555 999999999999999999 78899999999999999 456777
Q ss_pred ecccccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHH
Q 011969 395 VSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEE 459 (474)
Q Consensus 395 ~~~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 459 (474)
...|+..+++ .|++++ |+++++++|.+++.. +.+++++..+.+++...+++|..-.++
T Consensus 396 ~~~G~~~~l~----~~llv~P~d~~~la~ai~~~l~~---~~~e~~~r~~~~~~~v~~~~~~~w~~~ 455 (726)
T PRK14501 396 EMAGAAAELA----EALLVNPNDIEGIAAAIKRALEM---PEEEQRERMQAMQERLRRYDVHKWASD 455 (726)
T ss_pred cccchhHHhC----cCeEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6678888765 388886 799999999999985 344444444566666667777653344
No 90
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.68 E-value=2.4e-16 Score=138.72 Aligned_cols=130 Identities=28% Similarity=0.442 Sum_probs=95.1
Q ss_pred EEEEEeecccCCCHHHHHH-HHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHHHHHc
Q 011969 261 LVVSSTSWTPDEDFGILLE-AALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRL 339 (474)
Q Consensus 261 ~i~~~G~l~~~k~~~~Li~-a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~~~l 339 (474)
.++|+|++.+.|+++.+++ ++..+.++ .|+++|.|+|.+++ ++++.
T Consensus 4 ~i~~~g~~~~~k~~~~li~~~~~~l~~~---------------------------~p~~~l~i~G~~~~--~l~~~---- 50 (135)
T PF13692_consen 4 YIGYLGRIRPDKGLEELIEAALERLKEK---------------------------HPDIELIIIGNGPD--ELKRL---- 50 (135)
T ss_dssp EEE--S-SSGGGTHHHHHH-HHHHHHHH---------------------------STTEEEEEECESS---HHCCH----
T ss_pred cccccccccccccccchhhhHHHHHHHH---------------------------CcCEEEEEEeCCHH--HHHHh----
Confidence 7899999999999999999 99999874 78999999999876 23333
Q ss_pred CCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEeC-CHHH
Q 011969 340 RLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS-SSSE 418 (474)
Q Consensus 340 ~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~-~~~~ 418 (474)
..++|.|.|. + +++..+++.||++++|. ..++++|.|++|||++|+|||+++. +..+++.....|.++. |+++
T Consensus 51 ~~~~v~~~g~-~--~e~~~~l~~~dv~l~p~--~~~~~~~~k~~e~~~~G~pvi~~~~-~~~~~~~~~~~~~~~~~~~~~ 124 (135)
T PF13692_consen 51 RRPNVRFHGF-V--EELPEILAAADVGLIPS--RFNEGFPNKLLEAMAAGKPVIASDN-GAEGIVEEDGCGVLVANDPEE 124 (135)
T ss_dssp HHCTEEEE-S----HHHHHHHHC-SEEEE-B--SS-SCC-HHHHHHHCTT--EEEEHH-HCHCHS---SEEEE-TT-HHH
T ss_pred cCCCEEEcCC-H--HHHHHHHHhCCEEEEEe--eCCCcCcHHHHHHHHhCCCEEECCc-chhhheeecCCeEEECCCHHH
Confidence 1259999998 6 68999999999999963 2455899999999999999999998 5677776566666654 7999
Q ss_pred HHHHHHHHHhC
Q 011969 419 LADQLLMLFKG 429 (474)
Q Consensus 419 la~~i~~l~~~ 429 (474)
++++|.+++++
T Consensus 125 l~~~i~~l~~d 135 (135)
T PF13692_consen 125 LAEAIERLLND 135 (135)
T ss_dssp HHHHHHHHHH-
T ss_pred HHHHHHHHhcC
Confidence 99999999873
No 91
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.65 E-value=2.8e-14 Score=148.92 Aligned_cols=330 Identities=14% Similarity=0.085 Sum_probs=191.8
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHH
Q 011969 6 RACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPL 85 (474)
Q Consensus 6 ~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (474)
+++| ..|+-||.---...+.+|.++ +.++.+++.++......-.+ .+++++.++ ..++....+.+..+.+.+
T Consensus 7 ki~i-~aGgtsGhi~paal~~~l~~~-~~~~~~~g~gg~~m~~~g~~-~~~~~~~l~-----v~G~~~~l~~~~~~~~~~ 78 (385)
T TIGR00215 7 TIAL-VAGEASGDILGAGLRQQLKEH-YPNARFIGVAGPRMAAEGCE-VLYSMEELS-----VMGLREVLGRLGRLLKIR 78 (385)
T ss_pred eEEE-EeCCccHHHHHHHHHHHHHhc-CCCcEEEEEccHHHHhCcCc-cccChHHhh-----hccHHHHHHHHHHHHHHH
Confidence 3443 344444422222556667665 89999999775432211111 124444444 111212222222222222
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhh
Q 011969 86 IQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGK 165 (474)
Q Consensus 86 ~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 165 (474)
.+ +...+ +..+||+|++.+.++++..+ + .+++..|+|+++++. ... . ... . +-.+.+.+
T Consensus 79 ~~----~~~~l-~~~kPd~vi~~g~~~~~~~~-a-~aa~~~gip~v~~i~-P~~--w--aw~--~-------~~~r~l~~ 137 (385)
T TIGR00215 79 KE----VVQLA-KQAKPDLLVGIDAPDFNLTK-E-LKKKDPGIKIIYYIS-PQV--W--AWR--K-------WRAKKIEK 137 (385)
T ss_pred HH----HHHHH-HhcCCCEEEEeCCCCccHHH-H-HHHhhCCCCEEEEeC-CcH--h--hcC--c-------chHHHHHH
Confidence 22 12222 33799999999866666542 2 345567899887642 100 0 001 1 11445667
Q ss_pred hcCEEEEeCHHHHHHHHHHhCCceEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhh
Q 011969 166 MANGCLCVTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFT 245 (474)
Q Consensus 166 ~ad~vi~vS~~~~~~l~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (474)
.+|.++|.++..++.+.+ .+.++.++.|+..+.+.+.. ..+.+.+++++
T Consensus 138 ~~d~v~~~~~~e~~~~~~-~g~~~~~vGnPv~~~~~~~~-~~~~~~r~~lg----------------------------- 186 (385)
T TIGR00215 138 ATDFLLAILPFEKAFYQK-KNVPCRFVGHPLLDAIPLYK-PDRKSAREKLG----------------------------- 186 (385)
T ss_pred HHhHhhccCCCcHHHHHh-cCCCEEEECCchhhhccccC-CCHHHHHHHcC-----------------------------
Confidence 899999999999888765 47777776665322222110 12233455555
Q ss_pred cccccccccCCCCCeEEEEEe-eccc-CCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEE
Q 011969 246 SLAGIDVFLKPNRPALVVSST-SWTP-DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT 323 (474)
Q Consensus 246 ~~~~~~~~~~~~~~~~i~~~G-~l~~-~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv 323 (474)
++++.+.+++..| +..+ .++...+++++..+.++ .|++++++.
T Consensus 187 --------l~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~---------------------------~p~~~~vi~ 231 (385)
T TIGR00215 187 --------IDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQ---------------------------EPDLRRVLP 231 (385)
T ss_pred --------CCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHh---------------------------CCCeEEEEE
Confidence 3455665555555 4444 68899999999988763 688888665
Q ss_pred -eCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec-cccc
Q 011969 324 -GKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCI 400 (474)
Q Consensus 324 -G~g~~~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~-~~~~ 400 (474)
+++...+.+++..+.++. .+|.+.+. +...+|+.||++|+ +| |...+|+|+||+|+|.+. .+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~l~aADl~V~---~S-----Gt~tlEa~a~G~P~Vv~yk~~pl 298 (385)
T TIGR00215 232 VVNFKRRLQFEQIKAEYGPDLQLHLIDG-----DARKAMFAADAALL---AS-----GTAALEAALIKTPMVVGYRMKPL 298 (385)
T ss_pred eCCchhHHHHHHHHHHhCCCCcEEEECc-----hHHHHHHhCCEEee---cC-----CHHHHHHHHcCCCEEEEEcCCHH
Confidence 455556667777777665 35666532 56789999999999 44 557779999999999882 1111
Q ss_pred ----------------ccccccCCcEEE-e-C--CHHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHHh
Q 011969 401 ----------------EELVKVDKNGLL-F-S--SSSELADQLLMLFKGFPDDS----DVLKKLRNGTLEM 447 (474)
Q Consensus 401 ----------------~e~v~~~~~G~l-~-~--~~~~la~~i~~l~~~~~~~~----~~~~~~~~~~~~~ 447 (474)
..++.+.+..-. . + +++.+++.+.+++++ + +.++++++...+.
T Consensus 299 ~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~----~~~~~~~~~~~~~~~~~~ 365 (385)
T TIGR00215 299 TFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLEN----GLKAYKEMHRERQFFEEL 365 (385)
T ss_pred HHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcC----CcccHHHHHHHHHHHHHH
Confidence 122221111111 1 2 588999999999985 6 6677777766654
No 92
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.57 E-value=1.3e-13 Score=148.66 Aligned_cols=160 Identities=19% Similarity=0.199 Sum_probs=136.1
Q ss_pred eEEEEEe--ecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh---HHHHH
Q 011969 260 ALVVSST--SWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK---ESYEE 334 (474)
Q Consensus 260 ~~i~~~G--~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~---~~~~~ 334 (474)
..+++++ |+ +.|.++.+|+++..+.+. .|+++|.+.|.|.+. +.+++
T Consensus 320 ~~~I~v~idrL-~ek~~~~~I~av~~~~~~---------------------------~p~~~L~~~gy~~~~~~~~~l~~ 371 (519)
T TIGR03713 320 ETEIGFWIDGL-SDEELQQILQQLLQYILK---------------------------NPDYELKILTYNNDNDITQLLED 371 (519)
T ss_pred ceEEEEEcCCC-ChHHHHHHHHHHHHHHhh---------------------------CCCeEEEEEEecCchhHHHHHHH
Confidence 3788888 99 999999999999998773 799999999988643 45555
Q ss_pred HHHHcCC------------------------------CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHH
Q 011969 335 KIRRLRL------------------------------KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVD 384 (474)
Q Consensus 335 ~~~~l~l------------------------------~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~E 384 (474)
.++++++ .+|.|.|. .+..++...|+.+.++|. .|..++|+ ..+|
T Consensus 372 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~gy-~~e~dl~~~~~~arl~id---~s~~eg~~-~~ie 446 (519)
T TIGR03713 372 ILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKERIAFTTL-TNEEDLISALDKLRLIID---LSKEPDLY-TQIS 446 (519)
T ss_pred HHHHHHhhhchhhhccccchhhhhhhcccchhhcccccEEEEEec-CCHHHHHHHHhhheEEEE---CCCCCChH-HHHH
Confidence 5565533 38999987 555699999999999999 78899999 9999
Q ss_pred HHhcCCcEEEecccccccccccCCcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHH
Q 011969 385 MFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEE 459 (474)
Q Consensus 385 ama~G~PVia~~~~~~~e~v~~~~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 459 (474)
|++.|+|+| + -+..++|+++.||+++++.++|+++|..++.+ ++..+++...+.+.+.+|+=+.-|++
T Consensus 447 AiS~GiPqI--n-yg~~~~V~d~~NG~li~d~~~l~~al~~~L~~----~~~wn~~~~~sy~~~~~yS~~~i~~k 514 (519)
T TIGR03713 447 GISAGIPQI--N-KVETDYVEHNKNGYIIDDISELLKALDYYLDN----LKNWNYSLAYSIKLIDDYSSENIIER 514 (519)
T ss_pred HHHcCCCee--e-cCCceeeEcCCCcEEeCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999 3 34589999999999999999999999999995 88999999999988877776655543
No 93
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.53 E-value=3.8e-12 Score=135.82 Aligned_cols=135 Identities=13% Similarity=0.097 Sum_probs=112.2
Q ss_pred EEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCC----CEEEEEEeCCC-----C---
Q 011969 261 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYP----RLLFIITGKGP-----D--- 328 (474)
Q Consensus 261 ~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~ivG~g~-----~--- 328 (474)
+|++++|+.+.||+...++|+..+.++ +| +++|+++|.+. +
T Consensus 287 iIl~VDRLDy~KGI~~kl~Afe~~L~~---------------------------~Pe~~gkv~Lvqi~~psr~~v~~y~~ 339 (487)
T TIGR02398 287 LILSAERVDYTKGILEKLNAYERLLER---------------------------RPELLGKVTLVTACVPAASGMTIYDE 339 (487)
T ss_pred EEEEecccccccCHHHHHHHHHHHHHh---------------------------CccccCceEEEEEeCCCcccchHHHH
Confidence 899999999999999999999998763 56 47999998763 1
Q ss_pred -hHHHHHHHHHc-------CC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCC----cEEEe
Q 011969 329 -KESYEEKIRRL-------RL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGL----PVCAV 395 (474)
Q Consensus 329 -~~~~~~~~~~l-------~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~----PVia~ 395 (474)
+.++++.+.+. +. +-+.|.+. +|.+++..+|+.||+++. ++..+|+.++..||+||+. |+|.|
T Consensus 340 l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~-v~~~el~alYr~ADV~lv---T~lrDGmNLVa~Eyva~~~~~~GvLILS 415 (487)
T TIGR02398 340 LQGQIEQAVGRINGRFARIGWTPLQFFTRS-LPYEEVSAWFAMADVMWI---TPLRDGLNLVAKEYVAAQGLLDGVLVLS 415 (487)
T ss_pred HHHHHHHHHHHHhhccCCCCCccEEEEcCC-CCHHHHHHHHHhCCEEEE---CccccccCcchhhHHhhhcCCCCCEEEe
Confidence 24455555554 34 34566666 999999999999999999 8999999999999999998 99999
Q ss_pred cccccccccccCCcEEEeC--CHHHHHHHHHHHHhC
Q 011969 396 SYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 396 ~~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
..+|..+.+ ..+++++ |+++++++|...+..
T Consensus 416 efaGaa~~l---~~AllVNP~d~~~~A~ai~~AL~m 448 (487)
T TIGR02398 416 EFAGAAVEL---KGALLTNPYDPVRMDETIYVALAM 448 (487)
T ss_pred ccccchhhc---CCCEEECCCCHHHHHHHHHHHHcC
Confidence 988888665 3467886 899999999999997
No 94
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.50 E-value=7e-11 Score=121.92 Aligned_cols=324 Identities=19% Similarity=0.183 Sum_probs=186.7
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHhhCCCe-EEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHH
Q 011969 7 ACVVVLGDLGRSPRMQYQALSLARQMSLE-VDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPL 85 (474)
Q Consensus 7 ~~i~~~~~~g~~~r~~~~a~~l~~~~g~e-V~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (474)
+.+...|.=|+-.--.-.+..|.++ |++ |.++..... .........+++++.++. ...+.... ...+...++.+
T Consensus 3 ivl~~gGTGGHv~pAlAl~~~l~~~-g~~~v~~~~~~~~-~e~~l~~~~~~~~~~I~~--~~~~~~~~-~~~~~~~~~~~ 77 (357)
T COG0707 3 IVLTAGGTGGHVFPALALAEELAKR-GWEQVIVLGTGDG-LEAFLVKQYGIEFELIPS--GGLRRKGS-LKLLKAPFKLL 77 (357)
T ss_pred EEEEeCCCccchhHHHHHHHHHHhh-CccEEEEeccccc-ceeeeccccCceEEEEec--ccccccCc-HHHHHHHHHHH
Confidence 4444444444444444556777776 995 555543332 233444455899999983 22222111 11222223332
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhh
Q 011969 86 IQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGK 165 (474)
Q Consensus 86 ~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 165 (474)
....... .++ +..+||+|+.... +++.+ +.++++..++|++++-.|. ..+. ..+...+
T Consensus 78 ~~~~~a~-~il-~~~kPd~vig~Gg--yvs~P-~~~Aa~~~~iPv~ihEqn~-------~~G~----------ank~~~~ 135 (357)
T COG0707 78 KGVLQAR-KIL-KKLKPDVVIGTGG--YVSGP-VGIAAKLLGIPVIIHEQNA-------VPGL----------ANKILSK 135 (357)
T ss_pred HHHHHHH-HHH-HHcCCCEEEecCC--ccccH-HHHHHHhCCCCEEEEecCC-------Ccch----------hHHHhHH
Confidence 2221111 222 3489999998664 33332 4566778889999988887 2231 2234445
Q ss_pred hcCEEEEeCHHHHHHHHHHhC-CceEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhh
Q 011969 166 MANGCLCVTQAMQHELAQNWG-IKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIF 244 (474)
Q Consensus 166 ~ad~vi~vS~~~~~~l~~~~~-~~~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (474)
.|+.|.+.-.... ...+ .++.+.-+.....|...+. ...+ ..
T Consensus 136 ~a~~V~~~f~~~~----~~~~~~~~~~tG~Pvr~~~~~~~~-~~~~--~~------------------------------ 178 (357)
T COG0707 136 FAKKVASAFPKLE----AGVKPENVVVTGIPVRPEFEELPA-AEVR--KD------------------------------ 178 (357)
T ss_pred hhceeeecccccc----ccCCCCceEEecCcccHHhhccch-hhhh--hh------------------------------
Confidence 6676666544311 1111 1133333332222221110 0000 00
Q ss_pred hcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEE-EEE
Q 011969 245 TSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF-IIT 323 (474)
Q Consensus 245 ~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~iv 323 (474)
...+.+.++++.|+.+-.. +-+++..+... ...++.+ .++
T Consensus 179 ---------~~~~~~~ilV~GGS~Ga~~----ln~~v~~~~~~--------------------------l~~~~~v~~~~ 219 (357)
T COG0707 179 ---------GRLDKKTILVTGGSQGAKA----LNDLVPEALAK--------------------------LANRIQVIHQT 219 (357)
T ss_pred ---------ccCCCcEEEEECCcchhHH----HHHHHHHHHHH--------------------------hhhCeEEEEEc
Confidence 1125666888888865544 44444333321 0113555 555
Q ss_pred eCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccccc---
Q 011969 324 GKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI--- 400 (474)
Q Consensus 324 G~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~--- 400 (474)
|.+. .+++.+...+++. +...++ .+++..+|+.||++++ ..| ++++.|..++|+|+|-...+..
T Consensus 220 G~~~-~~~~~~~~~~~~~--~~v~~f---~~dm~~~~~~ADLvIs----RaG---a~Ti~E~~a~g~P~IliP~p~~~~~ 286 (357)
T COG0707 220 GKND-LEELKSAYNELGV--VRVLPF---IDDMAALLAAADLVIS----RAG---ALTIAELLALGVPAILVPYPPGADG 286 (357)
T ss_pred Ccch-HHHHHHHHhhcCc--EEEeeH---HhhHHHHHHhccEEEe----CCc---ccHHHHHHHhCCCEEEeCCCCCccc
Confidence 5544 5666666666664 888888 7889999999999998 333 4599999999999999876544
Q ss_pred -----ccccccCCcEEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccc
Q 011969 401 -----EELVKVDKNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLS 450 (474)
Q Consensus 401 -----~e~v~~~~~G~l~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 450 (474)
+..+.+.+.|.++. +++.+.+.|..++++ ++.+++|.+++.+....
T Consensus 287 ~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~----~~~l~~m~~~a~~~~~p 341 (357)
T COG0707 287 HQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSN----PEKLKAMAENAKKLGKP 341 (357)
T ss_pred hHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCCC
Confidence 23455556677764 378999999999985 89999999999987633
No 95
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.49 E-value=7.6e-11 Score=121.73 Aligned_cols=309 Identities=12% Similarity=0.112 Sum_probs=168.0
Q ss_pred ceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHH
Q 011969 5 GRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKP 84 (474)
Q Consensus 5 ~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (474)
|++++...|.=|+-..-.-.+..|.++ ||+|.+++..... ..++....|+.++.++ ........ ..+.+..+.+.
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~-g~~v~~vg~~~~~-e~~l~~~~g~~~~~~~--~~~l~~~~-~~~~~~~~~~~ 76 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKED-NWDISYIGSHQGI-EKTIIEKENIPYYSIS--SGKLRRYF-DLKNIKDPFLV 76 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhC-CCEEEEEECCCcc-ccccCcccCCcEEEEe--ccCcCCCc-hHHHHHHHHHH
Confidence 346666666544444444455666664 9999999955433 2344555578888887 22111110 12223333333
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHh
Q 011969 85 LIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYG 164 (474)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 164 (474)
+...+..+ .+. +..+||+|+.+.. ..+. .+.+++++.++|++++-.+.. .+ ...+.+.
T Consensus 77 ~~~~~~~~-~i~-~~~kPdvvi~~Gg--y~s~-p~~~aa~~~~~p~~i~e~n~~-------~g----------~~nr~~~ 134 (352)
T PRK12446 77 MKGVMDAY-VRI-RKLKPDVIFSKGG--FVSV-PVVIGGWLNRVPVLLHESDMT-------PG----------LANKIAL 134 (352)
T ss_pred HHHHHHHH-HHH-HhcCCCEEEecCc--hhhH-HHHHHHHHcCCCEEEECCCCC-------cc----------HHHHHHH
Confidence 33322222 222 3489999999773 2232 245778889999887555541 11 2345567
Q ss_pred hhcCEEEEeCHHHHHHHHHHhCCceEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhh
Q 011969 165 KMANGCLCVTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIF 244 (474)
Q Consensus 165 ~~ad~vi~vS~~~~~~l~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (474)
+.|+.+++--+...+.+. ..++.+.=+...+.|... .+...++.++
T Consensus 135 ~~a~~v~~~f~~~~~~~~---~~k~~~tG~Pvr~~~~~~---~~~~~~~~~~---------------------------- 180 (352)
T PRK12446 135 RFASKIFVTFEEAAKHLP---KEKVIYTGSPVREEVLKG---NREKGLAFLG---------------------------- 180 (352)
T ss_pred HhhCEEEEEccchhhhCC---CCCeEEECCcCCcccccc---cchHHHHhcC----------------------------
Confidence 788888765543332221 122322222222333211 1122223333
Q ss_pred hcccccccccCCCCCeEEEEEeecccCCCH-HHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEE-EE
Q 011969 245 TSLAGIDVFLKPNRPALVVSSTSWTPDEDF-GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF-II 322 (474)
Q Consensus 245 ~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~-~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~i 322 (474)
+.+++|.++++.|+.+.. .+ +.+.+++..+. +++.+ ++
T Consensus 181 ---------l~~~~~~iLv~GGS~Ga~-~in~~~~~~l~~l~------------------------------~~~~vv~~ 220 (352)
T PRK12446 181 ---------FSRKKPVITIMGGSLGAK-KINETVREALPELL------------------------------LKYQIVHL 220 (352)
T ss_pred ---------CCCCCcEEEEECCccchH-HHHHHHHHHHHhhc------------------------------cCcEEEEE
Confidence 346677788888887643 33 22222333321 12444 45
Q ss_pred EeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccc---
Q 011969 323 TGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC--- 399 (474)
Q Consensus 323 vG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~--- 399 (474)
+|... +++..... +++...++ + .++++.+|..||++|+ ..| ++++.|++++|+|.|......
T Consensus 221 ~G~~~----~~~~~~~~--~~~~~~~f-~-~~~m~~~~~~adlvIs----r~G---~~t~~E~~~~g~P~I~iP~~~~~~ 285 (352)
T PRK12446 221 CGKGN----LDDSLQNK--EGYRQFEY-V-HGELPDILAITDFVIS----RAG---SNAIFEFLTLQKPMLLIPLSKFAS 285 (352)
T ss_pred eCCch----HHHHHhhc--CCcEEecc-h-hhhHHHHHHhCCEEEE----CCC---hhHHHHHHHcCCCEEEEcCCCCCC
Confidence 66432 22222222 23444454 1 3689999999999997 223 458999999999999986431
Q ss_pred ------cccccccCCcEEEeC----CHHHHHHHHHHHHhC
Q 011969 400 ------IEELVKVDKNGLLFS----SSSELADQLLMLFKG 429 (474)
Q Consensus 400 ------~~e~v~~~~~G~l~~----~~~~la~~i~~l~~~ 429 (474)
..+.+.+.+.|..+. +++.+.+++..++++
T Consensus 286 ~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~ 325 (352)
T PRK12446 286 RGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHN 325 (352)
T ss_pred CchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcC
Confidence 122444555666653 488999999999874
No 96
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.37 E-value=5e-10 Score=127.07 Aligned_cols=163 Identities=10% Similarity=0.152 Sum_probs=124.8
Q ss_pred EEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEE--EEEE-------eCCCChHH
Q 011969 261 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLL--FIIT-------GKGPDKES 331 (474)
Q Consensus 261 ~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~iv-------G~g~~~~~ 331 (474)
+|++++++.+.||+...++|+..+.++ +|+++ ++++ |++++.++
T Consensus 365 iIlgVDRLD~~KGI~~kL~AfE~fL~~---------------------------~Pe~r~kVVLvQIa~psr~~v~eY~~ 417 (934)
T PLN03064 365 VMLGVDRLDMIKGIPQKILAFEKFLEE---------------------------NPEWRDKVVLLQIAVPTRTDVPEYQK 417 (934)
T ss_pred EEEEeeccccccCHHHHHHHHHHHHHh---------------------------CccccCCEEEEEEcCCCCCCcHHHHH
Confidence 899999999999999999999987663 66653 5555 45555444
Q ss_pred HHHHH----HHcC----C---CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhc-----CCcEEEe
Q 011969 332 YEEKI----RRLR----L---KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGC-----GLPVCAV 395 (474)
Q Consensus 332 ~~~~~----~~l~----l---~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~-----G~PVia~ 395 (474)
+++.+ .+.+ - .-|.++...++.+++..+|+.||++|+ +|..+|++++..|||+| |.+|+ +
T Consensus 418 l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL~AlY~~ADV~lv---TslrDGmNLva~Eyva~~~~~~GvLIL-S 493 (934)
T PLN03064 418 LTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALV---TSLRDGMNLVSYEFVACQDSKKGVLIL-S 493 (934)
T ss_pred HHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHHHHHHHhCCEEEe---CccccccCchHHHHHHhhcCCCCCeEE-e
Confidence 44333 3322 1 126666665899999999999999999 89999999999999999 45555 7
Q ss_pred cccccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHH
Q 011969 396 SYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEH 460 (474)
Q Consensus 396 ~~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 460 (474)
..+|.++.+ +..+++++ |+++++++|...+.. +++++++..+..+++...++|. .|-+.
T Consensus 494 EfaGaa~~L--~~~AllVNP~D~~~vA~AI~~AL~M---~~~Er~~r~~~~~~~V~~~d~~-~Wa~~ 554 (934)
T PLN03064 494 EFAGAAQSL--GAGAILVNPWNITEVAASIAQALNM---PEEEREKRHRHNFMHVTTHTAQ-EWAET 554 (934)
T ss_pred CCCchHHHh--CCceEEECCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhhcccCCHH-HHHHH
Confidence 877777766 44678886 799999999999985 5788888888888887777764 36443
No 97
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.36 E-value=5e-12 Score=112.30 Aligned_cols=151 Identities=21% Similarity=0.277 Sum_probs=85.6
Q ss_pred hHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011969 20 RMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKI 99 (474)
Q Consensus 20 r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (474)
.+...+.+|+++ ||+|+|++........ .....++.+++++.... .........+..+.+. + ..+.
T Consensus 6 ~~~~l~~~L~~~-G~~V~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------l---~~~~ 71 (160)
T PF13579_consen 6 YVRELARALAAR-GHEVTVVTPQPDPEDD-EEEEDGVRVHRLPLPRR--PWPLRLLRFLRRLRRL-------L---AARR 71 (160)
T ss_dssp HHHHHHHHHHHT-T-EEEEEEE---GGG--SEEETTEEEEEE--S-S--SSGGGHCCHHHHHHHH-------C---HHCT
T ss_pred HHHHHHHHHHHC-CCEEEEEecCCCCccc-ccccCCceEEeccCCcc--chhhhhHHHHHHHHHH-------H---hhhc
Confidence 455677888887 9999999977655432 24567999999983221 1111111111111111 1 1234
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCC-CchHHHHHHHHHHHHhhhcCEEEEeCHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGR-RSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (474)
.+||+||++++ ....++.++++..++|+|+++|+... .. ......+++++++..++.||.++++|+.++
T Consensus 72 ~~~Dvv~~~~~---~~~~~~~~~~~~~~~p~v~~~h~~~~-------~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~ 141 (160)
T PF13579_consen 72 ERPDVVHAHSP---TAGLVAALARRRRGIPLVVTVHGTLF-------RRGSRWKRRLYRWLERRLLRRADRVIVVSEAMR 141 (160)
T ss_dssp ---SEEEEEHH---HHHHHHHHHHHHHT--EEEE-SS-T-------------HHHHHHHHHHHHHHHH-SEEEESSHHHH
T ss_pred cCCeEEEeccc---chhHHHHHHHHccCCcEEEEECCCch-------hhccchhhHHHHHHHHHHHhcCCEEEECCHHHH
Confidence 89999999993 34445666666779999999998631 22 334456778999999999999999999999
Q ss_pred HHHHHHhCCc---eEEEeCC
Q 011969 179 HELAQNWGIK---ATVLYDQ 195 (474)
Q Consensus 179 ~~l~~~~~~~---~~vi~n~ 195 (474)
+.+.+ ++.+ +.++|||
T Consensus 142 ~~l~~-~g~~~~ri~vipnG 160 (160)
T PF13579_consen 142 RYLRR-YGVPPDRIHVIPNG 160 (160)
T ss_dssp HHHHH-H---GGGEEE----
T ss_pred HHHHH-hCCCCCcEEEeCcC
Confidence 99998 6654 8999986
No 98
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.30 E-value=3.6e-09 Score=116.11 Aligned_cols=183 Identities=11% Similarity=0.026 Sum_probs=134.3
Q ss_pred cCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh----
Q 011969 254 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK---- 329 (474)
Q Consensus 254 ~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~---- 329 (474)
+.++.+ ++++++|++..||.+++++++..+.+. .+.+ ...+.|++.|++...
T Consensus 385 ~dpd~~-~ig~v~Rl~~yKr~dLil~~i~~l~~i--------------------~~~~---~~pvq~V~~Gka~p~d~~g 440 (601)
T TIGR02094 385 LDPDVL-TIGFARRFATYKRADLIFRDLERLARI--------------------LNNP---ERPVQIVFAGKAHPADGEG 440 (601)
T ss_pred cCCCCc-EEEEEEcchhhhhHHHHHHHHHHHHHH--------------------hhCC---CCCeEEEEEEecCcccchH
Confidence 445666 899999999999999999998887641 0000 135899999988532
Q ss_pred ----HHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCC-CCCCchHHHHHHhcCCcEEEecccccccc
Q 011969 330 ----ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS-GLDLPMKVVDMFGCGLPVCAVSYSCIEEL 403 (474)
Q Consensus 330 ----~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~-~e~~p~kv~Eama~G~PVia~~~~~~~e~ 403 (474)
+.+.+.+++... ++|.|+.. .+.+-...++..||++++- |+. .|.+|+.=+=||..|.+.+++--|...|.
T Consensus 441 k~~i~~i~~la~~~~~~~kv~f~~~-Yd~~lA~~i~aG~Dv~L~~--Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~ 517 (601)
T TIGR02094 441 KEIIQRIVEFSKRPEFRGRIVFLEN-YDINLARYLVSGVDVWLNN--PRRPLEASGTSGMKAAMNGVLNLSILDGWWGEG 517 (601)
T ss_pred HHHHHHHHHHHhcccCCCCEEEEcC-CCHHHHHHHhhhheeEEeC--CCCCcCCchHHHHHHHHcCCceeecccCccccc
Confidence 334444444223 48998876 6777888899999999992 465 79999999999999999999987777776
Q ss_pred cccCCcEEEeC--------------CHHHHHHHHHHHH-hCCCCC-----HHHHHHHHHHHHHh-ccccchHHHHHHHHH
Q 011969 404 VKVDKNGLLFS--------------SSSELADQLLMLF-KGFPDD-----SDVLKKLRNGTLEM-GLSARWATEWEEHAK 462 (474)
Q Consensus 404 v~~~~~G~l~~--------------~~~~la~~i~~l~-~~~~~~-----~~~~~~~~~~~~~~-~~~~~w~~~~~~~~~ 462 (474)
. ++.||+.+. |.++|.++|++.+ ..|-++ |....++.++++.. ...++|..+.++..+
T Consensus 518 ~-~~~nGf~f~~~~~~~~~~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~ 596 (601)
T TIGR02094 518 Y-DGDNGWAIGDGEEYDDEEEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVD 596 (601)
T ss_pred C-CCCcEEEECCCccccccccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 6 678999986 3778888886644 322222 45678888888763 245888887777666
Q ss_pred HH
Q 011969 463 PL 464 (474)
Q Consensus 463 ~~ 464 (474)
.+
T Consensus 597 ~y 598 (601)
T TIGR02094 597 KF 598 (601)
T ss_pred Hh
Confidence 54
No 99
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.27 E-value=3.7e-09 Score=110.95 Aligned_cols=247 Identities=15% Similarity=0.174 Sum_probs=150.4
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEE-EecCchhhhhhhccCCCchHHHHHH---------H-HHHHHhhhcC
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLSLGRRSHFVSIYR---------W-IEKYYGKMAN 168 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~h~~~~~~~~~~~~~~~~~~~~~~---------~-~e~~~~~~ad 168 (474)
.+||+|++..-.. ..+++++.|+|+++ -.|.-.+... .+...+....+. | -.+...+.|+
T Consensus 92 ~~p~~v~~~Gg~v------~~~aA~~~~~p~~~~~~~esn~~~~---~~~~~~~~~~~~~~~G~~~~p~e~n~l~~~~a~ 162 (396)
T TIGR03492 92 KKGDLIVAVGDIV------PLLFAWLSGKPYAFVGTAKSDYYWE---SGPRRSPSDEYHRLEGSLYLPWERWLMRSRRCL 162 (396)
T ss_pred hcCCEEEEECcHH------HHHHHHHcCCCceEEEeeccceeec---CCCCCccchhhhccCCCccCHHHHHHhhchhhC
Confidence 4899999887321 44556777888766 3343321100 000001110010 1 1355557899
Q ss_pred EEEEeCHHHHHHHHHHhCCceEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccc
Q 011969 169 GCLCVTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLA 248 (474)
Q Consensus 169 ~vi~vS~~~~~~l~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (474)
.+++-.+...+.+.+ .|.++.++=|..-+...+... .
T Consensus 163 ~v~~~~~~t~~~l~~-~g~k~~~vGnPv~d~l~~~~~---~--------------------------------------- 199 (396)
T TIGR03492 163 AVFVRDRLTARDLRR-QGVRASYLGNPMMDGLEPPER---K--------------------------------------- 199 (396)
T ss_pred EEeCCCHHHHHHHHH-CCCeEEEeCcCHHhcCccccc---c---------------------------------------
Confidence 999999998888876 577666654442222211100 0
Q ss_pred ccccccCCCCCeEEEEEeecccC--CCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEe-C
Q 011969 249 GIDVFLKPNRPALVVSSTSWTPD--EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITG-K 325 (474)
Q Consensus 249 ~~~~~~~~~~~~~i~~~G~l~~~--k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG-~ 325 (474)
.+.++.+.+++..|+-..+ +++..+++++..+.+ . +++.+++.- +
T Consensus 200 ----~l~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~---------------------------~-~~~~~v~~~~~ 247 (396)
T TIGR03492 200 ----PLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPD---------------------------S-QPFVFLAAIVP 247 (396)
T ss_pred ----ccCCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhh---------------------------C-CCeEEEEEeCC
Confidence 1224455577777776433 567788889888754 2 567775543 4
Q ss_pred CCChHHHHHHHHHcCCC---------------cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCC
Q 011969 326 GPDKESYEEKIRRLRLK---------------RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGL 390 (474)
Q Consensus 326 g~~~~~~~~~~~~l~l~---------------~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~ 390 (474)
+.+.+.+++..++.++. ++.+... ..++..+|+.||++|+ . .| ....|++++|+
T Consensus 248 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~l~~ADlvI~---r-SG----t~T~E~a~lg~ 316 (396)
T TIGR03492 248 SLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLG---RGAFAEILHWADLGIA---M-AG----TATEQAVGLGK 316 (396)
T ss_pred CCCHHHHHHHHHhcCceecCCccccchhhccCceEEEec---hHhHHHHHHhCCEEEE---C-cC----HHHHHHHHhCC
Confidence 55667777766665542 2566544 5789999999999998 3 33 35699999999
Q ss_pred cEEEeccccc---cccccc-----CCcEEEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 011969 391 PVCAVSYSCI---EELVKV-----DKNGLLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTL 445 (474)
Q Consensus 391 PVia~~~~~~---~e~v~~-----~~~G~l~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~ 445 (474)
|+|.....+. ..+.+. +....+.+ +++.+++++..++++ ++.+++|.+++.
T Consensus 317 P~Ilip~~~~q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d----~~~~~~~~~~~~ 376 (396)
T TIGR03492 317 PVIQLPGKGPQFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLAD----PELLERCRRNGQ 376 (396)
T ss_pred CEEEEeCCCCHHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcC----HHHHHHHHHHHH
Confidence 9999874322 122222 33333334 589999999999984 788888875443
No 100
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.20 E-value=4e-08 Score=101.55 Aligned_cols=259 Identities=19% Similarity=0.208 Sum_probs=173.5
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEE-EecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (474)
.+||+.++...-.+|.++ .-.+.+++|+++ ..+-. ...-..+ .....+.+.+.+..|.|++.|+..+
T Consensus 122 ~~P~l~Ii~EtElWPnli---~e~~~~~~p~~LvNaRLS--------~rS~~~y-~k~~~~~~~~~~~i~li~aQse~D~ 189 (419)
T COG1519 122 WRPKLLIIMETELWPNLI---NELKRRGIPLVLVNARLS--------DRSFARY-AKLKFLARLLFKNIDLILAQSEEDA 189 (419)
T ss_pred cCCCEEEEEeccccHHHH---HHHHHcCCCEEEEeeeec--------hhhhHHH-HHHHHHHHHHHHhcceeeecCHHHH
Confidence 789999998877777663 234467788665 22211 0011111 2234556667788999999999999
Q ss_pred HHHHHHhCCce-EEEeCCCCCCCCCC---ChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccccccccc
Q 011969 179 HELAQNWGIKA-TVLYDQPPEFFHPT---SLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFL 254 (474)
Q Consensus 179 ~~l~~~~~~~~-~vi~n~~~~~f~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (474)
+.+.+. |.+. .+.=| ..++... .......++.+++
T Consensus 190 ~Rf~~L-Ga~~v~v~GN--lKfd~~~~~~~~~~~~~~r~~l~-------------------------------------- 228 (419)
T COG1519 190 QRFRSL-GAKPVVVTGN--LKFDIEPPPQLAAELAALRRQLG-------------------------------------- 228 (419)
T ss_pred HHHHhc-CCcceEEecc--eeecCCCChhhHHHHHHHHHhcC--------------------------------------
Confidence 999884 7653 33222 2222222 1223344444443
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh-HHHH
Q 011969 255 KPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-ESYE 333 (474)
Q Consensus 255 ~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~-~~~~ 333 (474)
..+| +++..++ ....-+.++++.+.+.++ +|+..++++-..|++ +.++
T Consensus 229 -~~r~-v~iaaST--H~GEeei~l~~~~~l~~~---------------------------~~~~llIlVPRHpERf~~v~ 277 (419)
T COG1519 229 -GHRP-VWVAAST--HEGEEEIILDAHQALKKQ---------------------------FPNLLLILVPRHPERFKAVE 277 (419)
T ss_pred -CCCc-eEEEecC--CCchHHHHHHHHHHHHhh---------------------------CCCceEEEecCChhhHHHHH
Confidence 3366 4455554 333455688999999885 899999999999886 7789
Q ss_pred HHHHHcCCCcEEEecCCC-----------CcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec----cc
Q 011969 334 EKIRRLRLKRVAFRTMWL-----------SAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS----YS 398 (474)
Q Consensus 334 ~~~~~l~l~~V~f~g~~v-----------~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~----~~ 398 (474)
+++++.|+.-..+...-. +--++..+|+.||+.++- .|--.-=|--.+|+.++|+|||.-. ..
T Consensus 278 ~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVG--GSlv~~GGHN~LEpa~~~~pvi~Gp~~~Nf~ 355 (419)
T COG1519 278 NLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVG--GSLVPIGGHNPLEPAAFGTPVIFGPYTFNFS 355 (419)
T ss_pred HHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEEC--CcccCCCCCChhhHHHcCCCEEeCCccccHH
Confidence 999999874333332201 134799999999999983 2211112446799999999999864 45
Q ss_pred ccccccccCCcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 399 CIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 399 ~~~e~v~~~~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
.+.+-+...+.|+.++|.+.+++.+..++. |++.+++|++++.+..
T Consensus 356 ei~~~l~~~ga~~~v~~~~~l~~~v~~l~~----~~~~r~~~~~~~~~~v 401 (419)
T COG1519 356 DIAERLLQAGAGLQVEDADLLAKAVELLLA----DEDKREAYGRAGLEFL 401 (419)
T ss_pred HHHHHHHhcCCeEEECCHHHHHHHHHHhcC----CHHHHHHHHHHHHHHH
Confidence 666667778889999997777777777776 4899999999998865
No 101
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.19 E-value=2.9e-08 Score=103.13 Aligned_cols=239 Identities=16% Similarity=0.152 Sum_probs=141.4
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (474)
.+||++++++-.+ +.+++.+++...++|++ ++|+-.. +.+ ..- ....+...+.|+..++.++..++
T Consensus 92 ~~Pd~vlv~GD~~--~~la~alaA~~~~IPv~-HveaG~r-----s~~---~~e---E~~r~~i~~la~l~f~~t~~~~~ 157 (365)
T TIGR03568 92 LKPDLVVVLGDRF--EMLAAAIAAALLNIPIA-HIHGGEV-----TEG---AID---ESIRHAITKLSHLHFVATEEYRQ 157 (365)
T ss_pred hCCCEEEEeCCch--HHHHHHHHHHHhCCcEE-EEECCcc-----CCC---Cch---HHHHHHHHHHHhhccCCCHHHHH
Confidence 7899999998432 33356777888899965 4554411 111 111 12223445678889999999888
Q ss_pred HHHHHhCCc---eEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCC
Q 011969 180 ELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKP 256 (474)
Q Consensus 180 ~l~~~~~~~---~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (474)
.+.+. |.+ +.+.-|...+.+.......+..+.+++| +++
T Consensus 158 ~L~~e-g~~~~~i~~tG~~~iD~l~~~~~~~~~~~~~~lg-------------------------------------l~~ 199 (365)
T TIGR03568 158 RVIQM-GEDPDRVFNVGSPGLDNILSLDLLSKEELEEKLG-------------------------------------IDL 199 (365)
T ss_pred HHHHc-CCCCCcEEEECCcHHHHHHhhhccCHHHHHHHhC-------------------------------------CCC
Confidence 88764 543 3333332111111110011233444444 222
Q ss_pred CCCeEEEEEeecc--cCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHH
Q 011969 257 NRPALVVSSTSWT--PDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEE 334 (474)
Q Consensus 257 ~~~~~i~~~G~l~--~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~ 334 (474)
+.+++++..-+-+ .....+.+.+.++.+.+. ..++.++.-..++....+.+
T Consensus 200 ~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~---------------------------~~~~~vi~P~~~p~~~~i~~ 252 (365)
T TIGR03568 200 DKPYALVTFHPVTLEKESAEEQIKELLKALDEL---------------------------NKNYIFTYPNADAGSRIINE 252 (365)
T ss_pred CCCEEEEEeCCCcccccCchHHHHHHHHHHHHh---------------------------ccCCEEEEeCCCCCchHHHH
Confidence 3343444333322 223333444444444331 12343333223344444444
Q ss_pred HHHHcC--CCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEE
Q 011969 335 KIRRLR--LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLL 412 (474)
Q Consensus 335 ~~~~l~--l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l 412 (474)
.++++. .++|.+.+. ++..++..+++.|+++|. .|++ -+-||.++|+|+|+. +.-.|.++.+.+++.
T Consensus 253 ~i~~~~~~~~~v~l~~~-l~~~~~l~Ll~~a~~vit---dSSg-----gi~EA~~lg~Pvv~l--~~R~e~~~~g~nvl~ 321 (365)
T TIGR03568 253 AIEEYVNEHPNFRLFKS-LGQERYLSLLKNADAVIG---NSSS-----GIIEAPSFGVPTINI--GTRQKGRLRADSVID 321 (365)
T ss_pred HHHHHhcCCCCEEEECC-CChHHHHHHHHhCCEEEE---cChh-----HHHhhhhcCCCEEee--cCCchhhhhcCeEEE
Confidence 445432 368999998 999999999999999997 5545 348999999999965 467788878888887
Q ss_pred eC-CHHHHHHHHHHHHh
Q 011969 413 FS-SSSELADQLLMLFK 428 (474)
Q Consensus 413 ~~-~~~~la~~i~~l~~ 428 (474)
++ +++++.+++.++.+
T Consensus 322 vg~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 322 VDPDKEEIVKAIEKLLD 338 (365)
T ss_pred eCCCHHHHHHHHHHHhC
Confidence 76 79999999999543
No 102
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.17 E-value=1.5e-10 Score=95.90 Aligned_cols=86 Identities=16% Similarity=0.320 Sum_probs=77.9
Q ss_pred CCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cc
Q 011969 372 SSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LS 450 (474)
Q Consensus 372 ~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~ 450 (474)
++...+++.+++|+||||+|||+.+.++..+++.++..++.++|++++.+++..++++ ++.++++++++++.. ..
T Consensus 5 ~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~ll~~----~~~~~~ia~~a~~~v~~~ 80 (92)
T PF13524_consen 5 PSRSDGPNMRIFEAMACGTPVISDDSPGLREIFEDGEHIITYNDPEELAEKIEYLLEN----PEERRRIAKNARERVLKR 80 (92)
T ss_pred CCCCCCCchHHHHHHHCCCeEEECChHHHHHHcCCCCeEEEECCHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHh
Confidence 4555778999999999999999999999999999999999999999999999999995 999999999999877 48
Q ss_pred cchHHHHHHHH
Q 011969 451 ARWATEWEEHA 461 (474)
Q Consensus 451 ~~w~~~~~~~~ 461 (474)
++|++.|++++
T Consensus 81 ~t~~~~~~~il 91 (92)
T PF13524_consen 81 HTWEHRAEQIL 91 (92)
T ss_pred CCHHHHHHHHH
Confidence 99999988764
No 103
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.15 E-value=4.1e-10 Score=101.63 Aligned_cols=165 Identities=22% Similarity=0.287 Sum_probs=85.5
Q ss_pred EeCCCCCCchHHHH-HHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHH
Q 011969 11 VLGDLGRSPRMQYQ-ALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFF 89 (474)
Q Consensus 11 ~~~~~g~~~r~~~~-a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (474)
.....||.+|+... +..|+++ ||+|+|++.....+.... ......... ................+
T Consensus 7 ~~~~~GG~e~~~~~l~~~l~~~-G~~v~v~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~-------- 72 (177)
T PF13439_consen 7 FLPNIGGAERVVLNLARALAKR-GHEVTVVSPGVKDPIEEE----LVKIFVKIP-YPIRKRFLRSFFFMRRL-------- 72 (177)
T ss_dssp -TTSSSHHHHHHHHHHHHHHHT-T-EEEEEESS-TTS-SST----EEEE---TT--SSTSS--HHHHHHHHH--------
T ss_pred cCCCCChHHHHHHHHHHHHHHC-CCEEEEEEcCCCccchhh----ccceeeeee-cccccccchhHHHHHHH--------
Confidence 34556777776654 5667775 999999998765432111 111111110 00011111111111111
Q ss_pred HHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCE
Q 011969 90 MLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANG 169 (474)
Q Consensus 90 ~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ 169 (474)
+..+.+ .+||+||++.+...... ..+.. +.|++++.|+.... ........+....+...+++.+.+.+|.
T Consensus 73 ---~~~i~~-~~~DiVh~~~~~~~~~~---~~~~~--~~~~v~~~H~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (177)
T PF13439_consen 73 ---RRLIKK-EKPDIVHIHGPPAFWIA---LLACR--KVPIVYTIHGPYFE-RRFLKSKLSPYSYLNFRIERKLYKKADR 142 (177)
T ss_dssp ---HHHHHH-HT-SEEECCTTHCCCHH---HHHHH--CSCEEEEE-HHH---HHTTTTSCCCHHHHHHCTTHHHHCCSSE
T ss_pred ---HHHHHH-cCCCeEEecccchhHHH---HHhcc--CCCEEEEeCCCccc-ccccccccchhhhhhhhhhhhHHhcCCE
Confidence 122222 69999999986443322 12222 89999999998521 0001223444455555667777889999
Q ss_pred EEEeCHHHHHHHHHHhCCc---eEEEeCCC-CCCC
Q 011969 170 CLCVTQAMQHELAQNWGIK---ATVLYDQP-PEFF 200 (474)
Q Consensus 170 vi~vS~~~~~~l~~~~~~~---~~vi~n~~-~~~f 200 (474)
++|+|+.+++.+.+ +|.+ +.+||||. .+.|
T Consensus 143 ii~vS~~~~~~l~~-~~~~~~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 143 IIAVSESTKDELIK-FGIPPEKIHVIYNGIDTDRF 176 (177)
T ss_dssp EEESSHHHHHHHHH-HT--SS-EEE----B-CCCH
T ss_pred EEEECHHHHHHHHH-hCCcccCCEEEECCccHHHc
Confidence 99999999999999 7743 89999994 4555
No 104
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.13 E-value=3.4e-08 Score=106.20 Aligned_cols=267 Identities=18% Similarity=0.173 Sum_probs=151.5
Q ss_pred HHHHHHHhhhcCEEEEeCHHHHHHHHHHhCCc-eEEEeCCCC-CCCCCCCh-HHH-HHHHHhhhhccCCCCCcccccccc
Q 011969 157 RWIEKYYGKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQPP-EFFHPTSL-EEK-HELFCRLNKILHQPLGVQDCVSNA 232 (474)
Q Consensus 157 ~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~-~~vi~n~~~-~~f~~~~~-~~~-~~~~~~l~~~~~~~~~~~~~~~~~ 232 (474)
..+|+...+.||.+.+||+-++.+.....+.+ -.|+|||.+ ++|..... ... ..-++++.
T Consensus 212 ~~iEraaA~~AdvFTTVSeITa~Ea~~LL~r~pDvV~pNGl~v~~~~~~~efqnl~~~~k~ki~---------------- 275 (633)
T PF05693_consen 212 HSIERAAAHYADVFTTVSEITAKEAEHLLKRKPDVVTPNGLNVDKFPALHEFQNLHAKAKEKIH---------------- 275 (633)
T ss_dssp HHHHHHHHHHSSEEEESSHHHHHHHHHHHSS--SEE----B-GGGTSSTTHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHhcCeeeehhhhHHHHHHHHhCCCCCEEcCCCccccccccchHHHHHHHHHHHHHH----------------
Confidence 57899999999999999999999988777665 588899955 44443322 111 11222222
Q ss_pred ccCCcCcchhhhhc-ccccccccCCCCCeEEEEEeecc-cCCCHHHHHHHHHHhHHHHhhh-hc-----------cCCCc
Q 011969 233 GMEGQKADETIFTS-LAGIDVFLKPNRPALVVSSTSWT-PDEDFGILLEAALMYDRRVAAI-LN-----------EDDST 298 (474)
Q Consensus 233 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~G~l~-~~k~~~~Li~a~~~l~~~~~~~-~~-----------~~~~~ 298 (474)
.|.. .-.+.+.+.++..+.+..+||.. ..||+|.+|+|+..+...++.. .. .-.+-
T Consensus 276 ----------~fv~~~f~g~~dfd~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~ 345 (633)
T PF05693_consen 276 ----------EFVRGHFYGHYDFDLDKTLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSF 345 (633)
T ss_dssp ----------HHHHHHSTT---S-GGGEEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE
T ss_pred ----------HHHHHHhcccCCCCccceEEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCc
Confidence 1111 01112223445566888899987 5699999999999987753211 00 00011
Q ss_pred hhhH-----hHhhhc-------------------------------------------CC-ccccCCCEEEEEEeCCCCh
Q 011969 299 NEEV-----FLKEIS-------------------------------------------DG-KQYLYPRLLFIITGKGPDK 329 (474)
Q Consensus 299 ~~~~-----~~~~~~-------------------------------------------~~-~~~~~~~~~l~ivG~g~~~ 329 (474)
|-|+ ..|+|+ .. +....|-+.-.+. ....
T Consensus 346 ~ve~l~~~a~~~~l~~t~~~i~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~--d~~~ 423 (633)
T PF05693_consen 346 NVESLKGQAVTKQLRDTVDEIQEKIGKRLFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLH--DDSN 423 (633)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEET--TTTT
T ss_pred CHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCC--CCcc
Confidence 1111 111111 01 1111122222332 2334
Q ss_pred HHHHHHHHHcCC-C------cEEEecCCCCcc------cHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec
Q 011969 330 ESYEEKIRRLRL-K------RVAFRTMWLSAE------DYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 330 ~~~~~~~~~l~l-~------~V~f~g~~v~~~------~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~ 396 (474)
+.+...++++++ + +|.|.+.+++.. ++.+++..||++|+ ||++|++|.+-+|+.++|+|.|+|+
T Consensus 424 DpILn~irr~~L~N~~~drVKVIF~P~yL~~~dgif~l~Y~dfv~GcdLgvF---PSYYEPWGYTPlE~~a~gVPsITTn 500 (633)
T PF05693_consen 424 DPILNMIRRLGLFNNPEDRVKVIFHPEYLSGTDGIFNLDYYDFVRGCDLGVF---PSYYEPWGYTPLECTAFGVPSITTN 500 (633)
T ss_dssp -HHHHHHHHTT----TT-SEEEEE--S---TTSSSS-S-HHHHHHHSSEEEE-----SSBSS-HHHHHHHHTT--EEEET
T ss_pred CHHHHHHHhCCCCCCCCCceEEEEeeccccCCCCCCCCCHHHHhccCceeee---ccccccccCChHHHhhcCCceeecc
Confidence 668888899887 2 488887766544 78999999999999 7999999999999999999999999
Q ss_pred cccccccccc-----CCcEEEe-C----C----HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHH
Q 011969 397 YSCIEELVKV-----DKNGLLF-S----S----SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEW 457 (474)
Q Consensus 397 ~~~~~e~v~~-----~~~G~l~-~----~----~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 457 (474)
.+|....+.+ ...|+.+ + + ++++++.|..+... +..++..+|+++.+.+....|..--
T Consensus 501 LsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~la~~l~~f~~~---~~rqri~~Rn~ae~LS~~~dW~~~~ 572 (633)
T PF05693_consen 501 LSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQLADFLYKFCQL---SRRQRIIQRNRAERLSDLADWKNFG 572 (633)
T ss_dssp TBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHHHHHHHHHHHT-----HHHHHHHHHHHHHHGGGGBHHHHC
T ss_pred chhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 7766644432 2356655 2 3 45566666666654 6778899999999988888897533
No 105
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.10 E-value=2.6e-08 Score=105.57 Aligned_cols=123 Identities=12% Similarity=0.156 Sum_probs=99.3
Q ss_pred HHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCc
Q 011969 275 GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSA 353 (474)
Q Consensus 275 ~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~ 353 (474)
+..|+++..+.++ .|+++|.| |.+.+ .+.+.++ .++ ++|...+. ...
T Consensus 291 s~~I~~i~~Lv~~---------------------------lPd~~f~I-ga~te~s~kL~~L-~~y--~nvvly~~-~~~ 338 (438)
T TIGR02919 291 SDQIEHLEEIVQA---------------------------LPDYHFHI-AALTEMSSKLMSL-DKY--DNVKLYPN-ITT 338 (438)
T ss_pred HHHHHHHHHHHHh---------------------------CCCcEEEE-EecCcccHHHHHH-Hhc--CCcEEECC-cCh
Confidence 7889999999884 79999999 87766 5667666 665 46666655 456
Q ss_pred ccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc-ccccccccCCcEEEeC--CHHHHHHHHHHHHhCC
Q 011969 354 EDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS-CIEELVKVDKNGLLFS--SSSELADQLLMLFKGF 430 (474)
Q Consensus 354 ~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~-~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~ 430 (474)
.++..+|..||+++. .+.++++++.+.||++.|+||++-+.. +..+++.+ |.+++ ++++|+++|..++.+
T Consensus 339 ~~l~~ly~~~dlyLd---in~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~---g~l~~~~~~~~m~~~i~~lL~d- 411 (438)
T TIGR02919 339 QKIQELYQTCDIYLD---INHGNEILNAVRRAFEYNLLILGFEETAHNRDFIAS---ENIFEHNEVDQLISKLKDLLND- 411 (438)
T ss_pred HHHHHHHHhccEEEE---ccccccHHHHHHHHHHcCCcEEEEecccCCcccccC---CceecCCCHHHHHHHHHHHhcC-
Confidence 689999999999999 899999999999999999999999843 44466644 67775 699999999999985
Q ss_pred CCCHHHHHH
Q 011969 431 PDDSDVLKK 439 (474)
Q Consensus 431 ~~~~~~~~~ 439 (474)
++.+++
T Consensus 412 ---~~~~~~ 417 (438)
T TIGR02919 412 ---PNQFRE 417 (438)
T ss_pred ---HHHHHH
Confidence 554444
No 106
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.09 E-value=1.4e-08 Score=102.35 Aligned_cols=117 Identities=23% Similarity=0.343 Sum_probs=82.6
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHHH
Q 011969 257 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKI 336 (474)
Q Consensus 257 ~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~ 336 (474)
+.+.+++|.|..... .++++++.+ ++..++++|.+..
T Consensus 191 ~~~~iLv~~gg~~~~----~~~~~l~~~-------------------------------~~~~~~v~g~~~~-------- 227 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG----DLIEALKAL-------------------------------PDYQFIVFGPNAA-------- 227 (318)
T ss_pred CCCEEEEEeCCCcHH----HHHHHHHhC-------------------------------CCCeEEEEcCCcc--------
Confidence 345588999987665 556666653 5678888886521
Q ss_pred HHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccc------cccccccCCcE
Q 011969 337 RRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC------IEELVKVDKNG 410 (474)
Q Consensus 337 ~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~------~~e~v~~~~~G 410 (474)
+...+||.+.+. +.+++..++..||++|. ..|. +.+.|++++|+|++.....+ ..+.+++.+.|
T Consensus 228 -~~~~~ni~~~~~--~~~~~~~~m~~ad~vIs----~~G~---~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~ 297 (318)
T PF13528_consen 228 -DPRPGNIHVRPF--STPDFAELMAAADLVIS----KGGY---TTISEALALGKPALVIPRPGQDEQEYNARKLEELGLG 297 (318)
T ss_pred -cccCCCEEEeec--ChHHHHHHHHhCCEEEE----CCCH---HHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCe
Confidence 111468998875 34899999999999997 2221 26999999999999987643 23445556677
Q ss_pred EEeC----CHHHHHHHHHHH
Q 011969 411 LLFS----SSSELADQLLML 426 (474)
Q Consensus 411 ~l~~----~~~~la~~i~~l 426 (474)
...+ +++.|+++|+++
T Consensus 298 ~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 298 IVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred EEcccccCCHHHHHHHHhcC
Confidence 7754 578888887754
No 107
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.02 E-value=2.6e-07 Score=96.21 Aligned_cols=89 Identities=16% Similarity=0.122 Sum_probs=63.3
Q ss_pred CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccc----cccccccCCcEEEeC---
Q 011969 342 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKVDKNGLLFS--- 414 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~----~~e~v~~~~~G~l~~--- 414 (474)
++|.+.+. +|. ..++..||++|. ..| ..++.||+++|+|+|...... ..+.+...+.|...+
T Consensus 288 ~~v~~~~~-~p~---~~ll~~~d~~I~----hgG---~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~ 356 (401)
T cd03784 288 DNVRVVDF-VPH---DWLLPRCAAVVH----HGG---AGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRE 356 (401)
T ss_pred CceEEeCC-CCH---HHHhhhhheeee----cCC---chhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCccc
Confidence 68998876 654 566889999996 222 248999999999999986433 345565666777664
Q ss_pred -CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011969 415 -SSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 446 (474)
Q Consensus 415 -~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 446 (474)
+.+++.+++.+++++ ..+++..+.+.+
T Consensus 357 ~~~~~l~~al~~~l~~-----~~~~~~~~~~~~ 384 (401)
T cd03784 357 LTAERLAAALRRLLDP-----PSRRRAAALLRR 384 (401)
T ss_pred CCHHHHHHHHHHHhCH-----HHHHHHHHHHHH
Confidence 588999999999873 334444444444
No 108
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.99 E-value=1.8e-08 Score=89.08 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=84.5
Q ss_pred chHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011969 19 PRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVK 98 (474)
Q Consensus 19 ~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (474)
+.....+..|.++ |++|++++..... .......++++++++ .. .+. ....+. .. . ++..+ +
T Consensus 11 ~~~~~~~~~L~~~-g~~V~ii~~~~~~--~~~~~~~~i~~~~~~--~~-~k~---~~~~~~-~~----~----l~k~i-k 71 (139)
T PF13477_consen 11 TFIYNLAKELKKR-GYDVHIITPRNDY--EKYEIIEGIKVIRLP--SP-RKS---PLNYIK-YF----R----LRKII-K 71 (139)
T ss_pred HHHHHHHHHHHHC-CCEEEEEEcCCCc--hhhhHhCCeEEEEec--CC-CCc---cHHHHH-HH----H----HHHHh-c
Confidence 4566778889987 9999999986543 244446799999997 11 111 111111 11 1 12223 3
Q ss_pred cCCCCEEEEeCCCChhHHHHHHHHHhhCC-CcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeC
Q 011969 99 IASPDVFLVQNPPSVPTLVAVKWASSLRR-SAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVT 174 (474)
Q Consensus 99 ~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 174 (474)
..+||+||+|.+. +..+++.+++++.+ +|+|++.|+... .......++.+++.+.+.+.||.+++.|
T Consensus 72 ~~~~DvIh~h~~~--~~~~~~~l~~~~~~~~~~i~~~hg~~~-------~~~~~~~~~~~~~~~~~~k~~~~ii~~~ 139 (139)
T PF13477_consen 72 KEKPDVIHCHTPS--PYGLFAMLAKKLLKNKKVIYTVHGSDF-------YNSSKKKKLKKFIIKFAFKRADKIIVQS 139 (139)
T ss_pred cCCCCEEEEecCC--hHHHHHHHHHHHcCCCCEEEEecCCee-------ecCCchHHHHHHHHHHHHHhCCEEEEcC
Confidence 3789999999963 22445677777777 999999998732 1222222366789999999999999875
No 109
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=98.97 E-value=6.8e-08 Score=90.69 Aligned_cols=174 Identities=15% Similarity=0.182 Sum_probs=111.3
Q ss_pred ceEEEEEeCCCC-CCchHHHHHHHHHhh---CCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCC-CCchhHHHH
Q 011969 5 GRACVVVLGDLG-RSPRMQYQALSLARQ---MSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRG-LPKVLKPVL 79 (474)
Q Consensus 5 ~~~~i~~~~~~g-~~~r~~~~a~~l~~~---~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~-~~~~~~~~~ 79 (474)
++++|+..-.+. ..++.+..+..|+.. .|++|+|.|.....+. ......|+++..++.. ..+ ...+...+.
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~-~~~~y~gv~l~~i~~~---~~g~~~si~yd~~ 77 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPY-KEFEYNGVRLVYIPAP---KNGSAESIIYDFL 77 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCC-CCcccCCeEEEEeCCC---CCCchHHHHHHHH
Confidence 457777765553 345566555555433 4999999997754432 4556779999999821 121 111111111
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhC--CCcEEEEecCchhhhhhhccCCCchH-HHHH
Q 011969 80 LLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLR--RSAFIVDWHNFGYTLLSLSLGRRSHF-VSIY 156 (474)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~h~~~~~~~~~~~~~~~~~-~~~~ 156 (474)
.+.. .++.......+.|++++..... ..++..+.++++ |.|+++..|+..+ ...+++.+ ++++
T Consensus 78 sl~~-------al~~~~~~~~~~~ii~ilg~~~--g~~~~~~~r~~~~~g~~v~vN~DGlEW-----kR~KW~~~~k~~l 143 (185)
T PF09314_consen 78 SLLH-------ALRFIKQDKIKYDIILILGYGI--GPFFLPFLRKLRKKGGKVVVNMDGLEW-----KRAKWGRPAKKYL 143 (185)
T ss_pred HHHH-------HHHHHhhccccCCEEEEEcCCc--cHHHHHHHHhhhhcCCcEEECCCcchh-----hhhhcCHHHHHHH
Confidence 1111 1111122224688999887421 222344555554 5699999999865 22334444 6788
Q ss_pred HHHHHHHhhhcCEEEEeCHHHHHHHHHHhC-CceEEEeCCC
Q 011969 157 RWIEKYYGKMANGCLCVTQAMQHELAQNWG-IKATVLYDQP 196 (474)
Q Consensus 157 ~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~-~~~~vi~n~~ 196 (474)
++-|+...+.||.+||-|+..+++++++++ .+.++|++|.
T Consensus 144 k~~E~~avk~ad~lIaDs~~I~~y~~~~y~~~~s~~IaYGa 184 (185)
T PF09314_consen 144 KFSEKLAVKYADRLIADSKGIQDYIKERYGRKKSTFIAYGA 184 (185)
T ss_pred HHHHHHHHHhCCEEEEcCHHHHHHHHHHcCCCCcEEecCCC
Confidence 899999999999999999999999999999 7789998874
No 110
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.91 E-value=6.3e-07 Score=93.39 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=70.7
Q ss_pred EEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc
Q 011969 319 LFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 398 (474)
Q Consensus 319 ~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~ 398 (474)
.++.+|.+.+.+.+. .+ .++|.+.+. +|.. .++..||++|. .+ | ..++.||+++|+|+|+....
T Consensus 257 ~i~~~g~~~~~~~~~----~~-~~~v~~~~~-~p~~---~ll~~~~~~I~---hg-G---~~t~~Eal~~G~P~v~~p~~ 320 (392)
T TIGR01426 257 VVLSVGRGVDPADLG----EL-PPNVEVRQW-VPQL---EILKKADAFIT---HG-G---MNSTMEALFNGVPMVAVPQG 320 (392)
T ss_pred EEEEECCCCChhHhc----cC-CCCeEEeCC-CCHH---HHHhhCCEEEE---CC-C---chHHHHHHHhCCCEEecCCc
Confidence 445667665433222 11 258888865 7753 67899999987 22 2 13799999999999997532
Q ss_pred ----ccccccccCCcEEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011969 399 ----CIEELVKVDKNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 446 (474)
Q Consensus 399 ----~~~e~v~~~~~G~l~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 446 (474)
...+.+.+.+.|.... +.++++++|.+++++ ++.++++++-..+
T Consensus 321 ~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~----~~~~~~~~~l~~~ 372 (392)
T TIGR01426 321 ADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSD----PRYAERLRKMRAE 372 (392)
T ss_pred ccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcC----HHHHHHHHHHHHH
Confidence 3334455666777664 478999999999985 5544444444333
No 111
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=98.90 E-value=4.8e-07 Score=101.61 Aligned_cols=186 Identities=16% Similarity=0.065 Sum_probs=133.9
Q ss_pred cCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh----
Q 011969 254 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK---- 329 (474)
Q Consensus 254 ~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~---- 329 (474)
+.++.+ ++++++|+...|+.+++++.+..+.+- .+++. ..+.|++.|++...
T Consensus 474 ldpd~l-tigfarRfa~YKR~~Lil~dl~rl~~i--------------------l~~~~---~pvQ~IfaGKAhP~d~~g 529 (778)
T cd04299 474 LDPNVL-TIGFARRFATYKRATLLLRDPERLKRL--------------------LNDPE---RPVQFIFAGKAHPADEPG 529 (778)
T ss_pred cCCCcc-EEeeeecchhhhhHHHHHHHHHHHHHH--------------------hhCCC---CCeEEEEEEecCccchHH
Confidence 445554 899999999999999999988876541 11111 24899999987422
Q ss_pred H----HHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCC--CCCCchHHHHHHhcCCcEEEeccccccc
Q 011969 330 E----SYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS--GLDLPMKVVDMFGCGLPVCAVSYSCIEE 402 (474)
Q Consensus 330 ~----~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~--~e~~p~kv~Eama~G~PVia~~~~~~~e 402 (474)
. .+.+.+++... ++|.|+.. .+-+-...++..||+.++ +|. .|.+|+.=+=||..|.+-+++--|-..|
T Consensus 530 K~iIk~i~~~a~~p~~~~kVvfle~-Yd~~lA~~LvaG~DvwLn---~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E 605 (778)
T cd04299 530 KELIQEIVEFSRRPEFRGRIVFLED-YDMALARHLVQGVDVWLN---TPRRPLEASGTSGMKAALNGGLNLSVLDGWWDE 605 (778)
T ss_pred HHHHHHHHHHHhCcCCCCcEEEEcC-CCHHHHHHHHhhhhhccc---CCCCCCCCCccchHHHHHcCCeeeecccCcccc
Confidence 1 33334443333 58999876 677778888999999999 554 6899999999999999999998888888
Q ss_pred ccccCCcEEEeCC--------------HHHHHHHHHH-HHhCCCC-----CHHHHHHHHHHHHHh-ccccchHHHHHHHH
Q 011969 403 LVKVDKNGLLFSS--------------SSELADQLLM-LFKGFPD-----DSDVLKKLRNGTLEM-GLSARWATEWEEHA 461 (474)
Q Consensus 403 ~v~~~~~G~l~~~--------------~~~la~~i~~-l~~~~~~-----~~~~~~~~~~~~~~~-~~~~~w~~~~~~~~ 461 (474)
.. ++.||+.+.+ .++|.+.|++ ++-.|-. .|....+|.+++... ...++|..+.++.+
T Consensus 606 ~~-~g~nGwaig~~~~~~~~~~~d~~da~~Ly~~Le~~i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~ 684 (778)
T cd04299 606 GY-DGENGWAIGDGDEYEDDEYQDAEEAEALYDLLENEVIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYV 684 (778)
T ss_pred cc-CCCCceEeCCCccccChhhcchhhHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHH
Confidence 77 7899999953 4456666654 3312211 256677777777653 46788998888888
Q ss_pred HHHHHHH
Q 011969 462 KPLITEV 468 (474)
Q Consensus 462 ~~~~~~~ 468 (474)
++++.-.
T Consensus 685 ~~~Y~p~ 691 (778)
T cd04299 685 ERFYLPA 691 (778)
T ss_pred HHhHHHH
Confidence 8777543
No 112
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.83 E-value=5.9e-07 Score=89.93 Aligned_cols=255 Identities=16% Similarity=0.078 Sum_probs=142.8
Q ss_pred CCCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 011969 15 LGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWF 94 (474)
Q Consensus 15 ~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (474)
+|+--|....|..|.++ |++|..++...+....+.....|..++.++ ... . ...-...+...+.+
T Consensus 14 ~GHv~Rcl~LA~~l~~~-g~~v~f~~~~~~~~~~~~i~~~g~~v~~~~--~~~--~---~~~d~~~~~~~l~~------- 78 (279)
T TIGR03590 14 LGHVMRCLTLARALHAQ-GAEVAFACKPLPGDLIDLLLSAGFPVYELP--DES--S---RYDDALELINLLEE------- 78 (279)
T ss_pred ccHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHHHHHcCCeEEEec--CCC--c---hhhhHHHHHHHHHh-------
Confidence 45667888888888775 999999997765432345567788888887 110 0 01112222222222
Q ss_pred HhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeC
Q 011969 95 LCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVT 174 (474)
Q Consensus 95 ~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS 174 (474)
.+||++++.+... .... ...++ ..+ +.++.+-|+.. +. ..||.++..+
T Consensus 79 -----~~~d~vV~D~y~~-~~~~-~~~~k-~~~-~~l~~iDD~~~-------~~----------------~~~D~vin~~ 126 (279)
T TIGR03590 79 -----EKFDILIVDHYGL-DADW-EKLIK-EFG-RKILVIDDLAD-------RP----------------HDCDLLLDQN 126 (279)
T ss_pred -----cCCCEEEEcCCCC-CHHH-HHHHH-HhC-CeEEEEecCCC-------CC----------------cCCCEEEeCC
Confidence 6899999987532 2221 12222 223 34444555410 00 1578777776
Q ss_pred HHHHHHHHHHhCCceEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccccccccc
Q 011969 175 QAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFL 254 (474)
Q Consensus 175 ~~~~~~l~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (474)
.............+-..+.-|+. |.|. +.++.+.-... ..
T Consensus 127 ~~~~~~~y~~~~~~~~~~l~G~~--Y~~l----r~eF~~~~~~~----------------------------------~~ 166 (279)
T TIGR03590 127 LGADASDYQGLVPANCRLLLGPS--YALL----REEFYQLATAN----------------------------------KR 166 (279)
T ss_pred CCcCHhHhcccCcCCCeEEecch--HHhh----hHHHHHhhHhh----------------------------------hc
Confidence 64221111110011122233432 2222 11221110000 00
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCC-CChHHHH
Q 011969 255 KPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PDKESYE 333 (474)
Q Consensus 255 ~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g-~~~~~~~ 333 (474)
+.+.+.+++..|...+.+....+++++..+.. ..++. +++|.+ +..++++
T Consensus 167 ~~~~~~iLi~~GG~d~~~~~~~~l~~l~~~~~----------------------------~~~i~-vv~G~~~~~~~~l~ 217 (279)
T TIGR03590 167 RKPLRRVLVSFGGADPDNLTLKLLSALAESQI----------------------------NISIT-LVTGSSNPNLDELK 217 (279)
T ss_pred ccccCeEEEEeCCcCCcCHHHHHHHHHhcccc----------------------------CceEE-EEECCCCcCHHHHH
Confidence 11223477888877776656677777765421 12333 477866 5567777
Q ss_pred HHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc
Q 011969 334 EKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 398 (474)
Q Consensus 334 ~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~ 398 (474)
+.++.. ++|.+.+. .+++..++..||++|.. -|.++.|++++|+|+|+....
T Consensus 218 ~~~~~~--~~i~~~~~---~~~m~~lm~~aDl~Is~--------~G~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 218 KFAKEY--PNIILFID---VENMAELMNEADLAIGA--------AGSTSWERCCLGLPSLAICLA 269 (279)
T ss_pred HHHHhC--CCEEEEeC---HHHHHHHHHHCCEEEEC--------CchHHHHHHHcCCCEEEEEec
Confidence 777664 38998877 78999999999999982 245899999999999998653
No 113
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.65 E-value=1.3e-05 Score=81.51 Aligned_cols=77 Identities=16% Similarity=0.269 Sum_probs=53.8
Q ss_pred CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccccccc------ccccCCcEEEeC-
Q 011969 342 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEE------LVKVDKNGLLFS- 414 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e------~v~~~~~G~l~~- 414 (474)
+++.+.+. .+ +++..++..||++|+ .+ | . .++.||+++|+|++.....+..| .+.+.+.|...+
T Consensus 229 ~~v~~~~~-~~-~~~~~~l~~ad~vI~---~~-G--~-~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~ 299 (321)
T TIGR00661 229 ENVEIRRI-TT-DNFKELIKNAELVIT---HG-G--F-SLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEY 299 (321)
T ss_pred CCEEEEEC-Ch-HHHHHHHHhCCEEEE---CC-C--h-HHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcCh
Confidence 58888865 44 789999999999998 33 2 1 27999999999999998654322 455666777665
Q ss_pred -CHHHHHHHHHHHHh
Q 011969 415 -SSSELADQLLMLFK 428 (474)
Q Consensus 415 -~~~~la~~i~~l~~ 428 (474)
+. ++.+++...++
T Consensus 300 ~~~-~~~~~~~~~~~ 313 (321)
T TIGR00661 300 KEL-RLLEAILDIRN 313 (321)
T ss_pred hhH-HHHHHHHhccc
Confidence 34 44444444443
No 114
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.59 E-value=1e-06 Score=91.00 Aligned_cols=245 Identities=18% Similarity=0.178 Sum_probs=133.7
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (474)
.+||+|++++-. ...+++.+++...++| |.++|.--.+ .....+.. -......+.+.|+..+|.++..++
T Consensus 66 ~~Pd~Vlv~GD~--~~~la~alaA~~~~ip-v~HieaGlRs-----~d~~~g~~--de~~R~~i~~la~lhf~~t~~~~~ 135 (346)
T PF02350_consen 66 EKPDAVLVLGDR--NEALAAALAAFYLNIP-VAHIEAGLRS-----GDRTEGMP--DEINRHAIDKLAHLHFAPTEEARE 135 (346)
T ss_dssp HT-SEEEEETTS--HHHHHHHHHHHHTT-E-EEEES----------S-TTSSTT--HHHHHHHHHHH-SEEEESSHHHHH
T ss_pred cCCCEEEEEcCC--chHHHHHHHHHHhCCC-EEEecCCCCc-----cccCCCCc--hhhhhhhhhhhhhhhccCCHHHHH
Confidence 789999998753 3444677888889999 6667654110 01111110 112334556789999999999999
Q ss_pred HHHHHhCCce-EEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCC
Q 011969 180 ELAQNWGIKA-TVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNR 258 (474)
Q Consensus 180 ~l~~~~~~~~-~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (474)
.|.+. |.+. .+...|.+ ..+.+...... .. ..+. ...+.....+
T Consensus 136 ~L~~~-G~~~~rI~~vG~~---------~~D~l~~~~~~---------------------~~-~~~~---~~~i~~~~~~ 180 (346)
T PF02350_consen 136 RLLQE-GEPPERIFVVGNP---------GIDALLQNKEE---------------------IE-EKYK---NSGILQDAPK 180 (346)
T ss_dssp HHHHT-T--GGGEEE---H---------HHHHHHHHHHT---------------------TC-C-HH---HHHHHHCTTS
T ss_pred HHHhc-CCCCCeEEEEChH---------HHHHHHHhHHH---------------------Hh-hhhh---hHHHHhccCC
Confidence 99885 7642 22222321 00111100000 00 0000 0000001344
Q ss_pred CeEEEEEeecccC---CCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHH
Q 011969 259 PALVVSSTSWTPD---EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYE 333 (474)
Q Consensus 259 ~~~i~~~G~l~~~---k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~ 333 (474)
+++++..=+.+.. +....+.++++.+.++ +++.+++.....+ ...+.
T Consensus 181 ~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~----------------------------~~~~vi~~~hn~p~~~~~i~ 232 (346)
T PF02350_consen 181 PYILVTLHPVTNEDNPERLEQILEALKALAER----------------------------QNVPVIFPLHNNPRGSDIII 232 (346)
T ss_dssp EEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH----------------------------TTEEEEEE--S-HHHHHHHH
T ss_pred CEEEEEeCcchhcCChHHHHHHHHHHHHHHhc----------------------------CCCcEEEEecCCchHHHHHH
Confidence 5455555333332 3456777777777662 6788988886433 34455
Q ss_pred HHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec-ccccccccccCCcEEE
Q 011969 334 EKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCIEELVKVDKNGLL 412 (474)
Q Consensus 334 ~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~-~~~~~e~v~~~~~G~l 412 (474)
+..+++ +++.+... ++..++..+++.|++.|- .|.| ..-||..+|+|+|... .+.-.+.+..+.+-+
T Consensus 233 ~~l~~~--~~v~~~~~-l~~~~~l~ll~~a~~vvg---dSsG-----I~eEa~~lg~P~v~iR~~geRqe~r~~~~nvl- 300 (346)
T PF02350_consen 233 EKLKKY--DNVRLIEP-LGYEEYLSLLKNADLVVG---DSSG-----IQEEAPSLGKPVVNIRDSGERQEGRERGSNVL- 300 (346)
T ss_dssp HHHTT---TTEEEE-----HHHHHHHHHHESEEEE---SSHH-----HHHHGGGGT--EEECSSS-S-HHHHHTTSEEE-
T ss_pred HHhccc--CCEEEECC-CCHHHHHHHHhcceEEEE---cCcc-----HHHHHHHhCCeEEEecCCCCCHHHHhhcceEE-
Confidence 455555 49999988 999999999999999997 4444 3349999999999984 566677776666656
Q ss_pred eC-CHHHHHHHHHHHHhC
Q 011969 413 FS-SSSELADQLLMLFKG 429 (474)
Q Consensus 413 ~~-~~~~la~~i~~l~~~ 429 (474)
++ |.+++.+++.++++.
T Consensus 301 v~~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 301 VGTDPEAIIQAIEKALSD 318 (346)
T ss_dssp ETSSHHHHHHHHHHHHH-
T ss_pred eCCCHHHHHHHHHHHHhC
Confidence 65 899999999999983
No 115
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.57 E-value=1.7e-05 Score=81.47 Aligned_cols=329 Identities=16% Similarity=0.155 Sum_probs=182.1
Q ss_pred EEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEE-EeecCCCCCCCCCchhHHHHHHHHHHHHH
Q 011969 10 VVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIH-TMTQWPTIPRGLPKVLKPVLLLLKPLIQF 88 (474)
Q Consensus 10 ~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (474)
++.|+..|.--......+|-.+.+ +|.+++-+|....+ .|++.. .+. ....-++.-+...+..+++...++
T Consensus 6 i~AGE~SGDllGa~LikaLk~~~~-~~efvGvgG~~m~a-----eG~~sl~~~~--elsvmGf~EVL~~lp~llk~~~~~ 77 (381)
T COG0763 6 LSAGEASGDLLGAGLIKALKARYP-DVEFVGVGGEKMEA-----EGLESLFDME--ELSVMGFVEVLGRLPRLLKIRREL 77 (381)
T ss_pred EEecccchhhHHHHHHHHHHhhCC-CeEEEEeccHHHHh-----ccCccccCHH--HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 444555444444555667766644 99999988755432 232111 111 000111111122222222222221
Q ss_pred HHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHh-hCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhc
Q 011969 89 FMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASS-LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMA 167 (474)
Q Consensus 89 ~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~a 167 (474)
.. . + ...+||++++-+.|.+...+ ...+++ ...+|+|+.+--..| .+++-+ -..+.+..
T Consensus 78 ~~---~-i-~~~kpD~~i~IDsPdFnl~v-ak~lrk~~p~i~iihYV~PsVW--------AWr~~R------a~~i~~~~ 137 (381)
T COG0763 78 VR---Y-I-LANKPDVLILIDSPDFNLRV-AKKLRKAGPKIKIIHYVSPSVW--------AWRPKR------AVKIAKYV 137 (381)
T ss_pred HH---H-H-HhcCCCEEEEeCCCCCchHH-HHHHHHhCCCCCeEEEECccee--------eechhh------HHHHHHHh
Confidence 11 1 1 12899999998877776654 444443 346887765443211 111110 12334678
Q ss_pred CEEEEeCHHHHHHHHHHhCCceEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcc
Q 011969 168 NGCLCVTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSL 247 (474)
Q Consensus 168 d~vi~vS~~~~~~l~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (474)
|+++|+=+...+++.+ .|.+++.+=+...+...-.+ .+...+++++
T Consensus 138 D~lLailPFE~~~y~k-~g~~~~yVGHpl~d~i~~~~--~r~~ar~~l~------------------------------- 183 (381)
T COG0763 138 DHLLAILPFEPAFYDK-FGLPCTYVGHPLADEIPLLP--DREAAREKLG------------------------------- 183 (381)
T ss_pred hHeeeecCCCHHHHHh-cCCCeEEeCChhhhhccccc--cHHHHHHHhC-------------------------------
Confidence 9999999999987777 58876666554222211111 2344667776
Q ss_pred cccccccCCCCCeEEEEEeeccc--CCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeC
Q 011969 248 AGIDVFLKPNRPALVVSSTSWTP--DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK 325 (474)
Q Consensus 248 ~~~~~~~~~~~~~~i~~~G~l~~--~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~ 325 (474)
+..+.+.+.+.-|+=.. .+-...+.+|+..+..+ +|++++++--.
T Consensus 184 ------~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~---------------------------~~~~~~vlp~~ 230 (381)
T COG0763 184 ------IDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKAR---------------------------YPDLKFVLPLV 230 (381)
T ss_pred ------CCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhh---------------------------CCCceEEEecC
Confidence 44566667777776432 24566777888888764 89999999776
Q ss_pred CCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec-cccccc--
Q 011969 326 GPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCIEE-- 402 (474)
Q Consensus 326 g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~-~~~~~e-- 402 (474)
.+..+.+++...+........+ +...+-...+..||+.+. . .|++.+|++.+|+|.|.+- ...+.-
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~aD~al~---a-----SGT~tLE~aL~g~P~Vv~Yk~~~it~~i 299 (381)
T COG0763 231 NAKYRRIIEEALKWEVAGLSLI---LIDGEKRKAFAAADAALA---A-----SGTATLEAALAGTPMVVAYKVKPITYFI 299 (381)
T ss_pred cHHHHHHHHHHhhccccCceEE---ecCchHHHHHHHhhHHHH---h-----ccHHHHHHHHhCCCEEEEEeccHHHHHH
Confidence 5543333333222221012222 346788889999999997 2 3569999999999999873 222211
Q ss_pred ---ccccCC-------cE-EEeC-------CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 403 ---LVKVDK-------NG-LLFS-------SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 403 ---~v~~~~-------~G-~l~~-------~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
.++-.. .| .+++ .++.+++++..++.+ ...++++.+...++.
T Consensus 300 ak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~----~~~~~~~~~~~~~l~ 359 (381)
T COG0763 300 AKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLN----GDRREALKEKFRELH 359 (381)
T ss_pred HHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcC----hHhHHHHHHHHHHHH
Confidence 111110 01 1221 388999999999985 555566666665544
No 116
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.55 E-value=3.9e-05 Score=79.08 Aligned_cols=256 Identities=17% Similarity=0.189 Sum_probs=158.2
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (474)
.+||+|++|+-. .+.+++.+++.+.++|+..---+. ..+....-.. .-.+.....||.-++.|+..++
T Consensus 91 ~kPD~VlVhGDT--~t~lA~alaa~~~~IpV~HvEAGl-------Rt~~~~~PEE---~NR~l~~~~S~~hfapte~ar~ 158 (383)
T COG0381 91 EKPDLVLVHGDT--NTTLAGALAAFYLKIPVGHVEAGL-------RTGDLYFPEE---INRRLTSHLSDLHFAPTEIARK 158 (383)
T ss_pred hCCCEEEEeCCc--chHHHHHHHHHHhCCceEEEeccc-------ccCCCCCcHH---HHHHHHHHhhhhhcCChHHHHH
Confidence 899999999853 344456788888889965432222 1111110011 1223455688999999999999
Q ss_pred HHHHHhCCc---eEEEeCCCCCCCCCCChH--HHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccccccccc
Q 011969 180 ELAQNWGIK---ATVLYDQPPEFFHPTSLE--EKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFL 254 (474)
Q Consensus 180 ~l~~~~~~~---~~vi~n~~~~~f~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (474)
.|.+. |.+ +.++=|...+........ +.......+ -.
T Consensus 159 nLl~E-G~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~-------------------------------------~~ 200 (383)
T COG0381 159 NLLRE-GVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAKG-------------------------------------LD 200 (383)
T ss_pred HHHHc-CCCccceEEeCChHHHHHHHHHhhhccchhhHHhh-------------------------------------hc
Confidence 98885 655 333322211111111000 000000000 01
Q ss_pred CCCCCeEEEEEeeccc-CCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHH
Q 011969 255 KPNRPALVVSSTSWTP-DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 333 (474)
Q Consensus 255 ~~~~~~~i~~~G~l~~-~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~ 333 (474)
..++.++++..-|-.. .+++..+.+++..+.++ ++++.++.--. +. ..++
T Consensus 201 ~~~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~---------------------------~~~~~viyp~H-~~-~~v~ 251 (383)
T COG0381 201 DKDKKYILVTAHRRENVGEPLEEICEALREIAEE---------------------------YPDVIVIYPVH-PR-PRVR 251 (383)
T ss_pred cccCcEEEEEcchhhcccccHHHHHHHHHHHHHh---------------------------CCCceEEEeCC-CC-hhhh
Confidence 1233445555544433 27888888988888774 56666655442 22 4455
Q ss_pred HHH-HHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec-ccccccccccCCcE
Q 011969 334 EKI-RRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCIEELVKVDKNG 410 (474)
Q Consensus 334 ~~~-~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~-~~~~~e~v~~~~~G 410 (474)
+.. +.++- ++|.++.+ +...++..++..|-+.+- .|.| -.=||-..|+||++-. ...-+|.++.+ +-
T Consensus 252 e~~~~~L~~~~~v~li~p-l~~~~f~~L~~~a~~ilt---DSGg-----iqEEAp~lg~Pvl~lR~~TERPE~v~ag-t~ 321 (383)
T COG0381 252 ELVLKRLKNVERVKLIDP-LGYLDFHNLMKNAFLILT---DSGG-----IQEEAPSLGKPVLVLRDTTERPEGVEAG-TN 321 (383)
T ss_pred HHHHHHhCCCCcEEEeCC-cchHHHHHHHHhceEEEe---cCCc-----hhhhHHhcCCcEEeeccCCCCccceecC-ce
Confidence 555 55554 58999998 999999999999966664 5544 4679999999999986 56667766443 44
Q ss_pred EEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 411 LLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 411 ~l~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
.++. +.+.+.+++..++++ ++.+++|++..--++
T Consensus 322 ~lvg~~~~~i~~~~~~ll~~----~~~~~~m~~~~npYg 356 (383)
T COG0381 322 ILVGTDEENILDAATELLED----EEFYERMSNAKNPYG 356 (383)
T ss_pred EEeCccHHHHHHHHHHHhhC----hHHHHHHhcccCCCc
Confidence 5554 789999999999995 778888877665554
No 117
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=98.52 E-value=2.5e-06 Score=88.30 Aligned_cols=219 Identities=13% Similarity=0.194 Sum_probs=108.8
Q ss_pred hhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHHHHHHHhCCc-eEEEeCCCC--C-C
Q 011969 124 SLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQPP--E-F 199 (474)
Q Consensus 124 ~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~-~~vi~n~~~--~-~ 199 (474)
...+.++|..||+.+................ ......+..|.+++.|+.+++.+.+.++.+ -.++..|-| + .
T Consensus 96 ~~~~~~~i~lwHG~~~K~~g~~~~~~~~~~~----~~~~~~~~~d~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l 171 (369)
T PF04464_consen 96 KRKNQKYIQLWHGIPLKKIGYDSPDNKNYRK----NYKRNYRNYDYFIVSSEFEKEIFKKAFGYPEDKILVTGYPRNDYL 171 (369)
T ss_dssp --TTSEEEE--SS--SB--GGG-S---TS-H----HHHHHHTT-SEEEESSHHHHHHHHHHTT--GGGEEES--GGGHHH
T ss_pred cCCCcEEEEecCCCcccccchhccccccchh----hhhhhccCCcEEEECCHHHHHHHHHHhccCcceEEEeCCCeEhHH
Confidence 4567889999999853322211111110001 222344678999999999999999888876 355566643 1 2
Q ss_pred CCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCH-----
Q 011969 200 FHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDF----- 274 (474)
Q Consensus 200 f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~----- 274 (474)
+.... .....+.+.++ +..++. +|+|+-+|.....-
T Consensus 172 ~~~~~-~~~~~i~~~~~-------------------------------------~~~~~k-~ILyaPT~R~~~~~~~~~~ 212 (369)
T PF04464_consen 172 FNKSK-ENRNRIKKKLG-------------------------------------IDKDKK-VILYAPTWRDNSSNEYFKF 212 (369)
T ss_dssp HHSTT--HHHHHHHHTT---------------------------------------SS-E-EEEEE----GGG--GGSS-
T ss_pred hccCH-HHHHHHHHHhc-------------------------------------cCCCCc-EEEEeeccccccccccccc
Confidence 22222 12344555554 223333 88888766554332
Q ss_pred -HH--HHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHHHHH-cCC-CcEEEecC
Q 011969 275 -GI--LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRR-LRL-KRVAFRTM 349 (474)
Q Consensus 275 -~~--Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~~~-l~l-~~V~f~g~ 349 (474)
.. -.+.+..+ ..+++.+++-..... ...... ... ++|.+...
T Consensus 213 ~~~~~~~~~l~~~-----------------------------~~~~~~li~k~Hp~~----~~~~~~~~~~~~~i~~~~~ 259 (369)
T PF04464_consen 213 FFSDLDFEKLNFL-----------------------------LKNNYVLIIKPHPNM----KKKFKDFKEDNSNIIFVSD 259 (369)
T ss_dssp ---TT-HHHHHHH-----------------------------HTTTEEEEE--SHHH----HTT----TT-TTTEEE-TT
T ss_pred cccccCHHHHHHH-----------------------------hCCCcEEEEEeCchh----hhchhhhhccCCcEEECCC
Confidence 11 11222211 146788888775321 222221 222 58888765
Q ss_pred CCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEe--ccc------ccccccccCCcEEEeCCHHHHHH
Q 011969 350 WLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV--SYS------CIEELVKVDKNGLLFSSSSELAD 421 (474)
Q Consensus 350 ~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~--~~~------~~~e~v~~~~~G~l~~~~~~la~ 421 (474)
.+++..++..||++|. . ++..++|++.+++|||.- |.. |...-..+...|-++.+.++|.+
T Consensus 260 ---~~~~~~ll~~aDiLIT---D-----ySSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~~~~eL~~ 328 (369)
T PF04464_consen 260 ---NEDIYDLLAAADILIT---D-----YSSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVYNFEELIE 328 (369)
T ss_dssp ----S-HHHHHHT-SEEEE---S-----S-THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EESSHHHHHH
T ss_pred ---CCCHHHHHHhcCEEEE---e-----chhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCceeCCHHHHHH
Confidence 6699999999999997 2 334899999999999965 321 11111234456788889999999
Q ss_pred HHHHHHhC
Q 011969 422 QLLMLFKG 429 (474)
Q Consensus 422 ~i~~l~~~ 429 (474)
+|..++++
T Consensus 329 ~i~~~~~~ 336 (369)
T PF04464_consen 329 AIENIIEN 336 (369)
T ss_dssp HHTTHHHH
T ss_pred HHHhhhhC
Confidence 99998875
No 118
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=98.43 E-value=0.00016 Score=77.69 Aligned_cols=158 Identities=15% Similarity=0.135 Sum_probs=96.5
Q ss_pred eEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC---------hH
Q 011969 260 ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD---------KE 330 (474)
Q Consensus 260 ~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~---------~~ 330 (474)
.+|+.+.++...||+..=++|+..+.++ .+....++.|+=++.... ++
T Consensus 277 ~ii~gvDrld~~kGi~~kl~Afe~fL~~-----------------------~P~~~~kv~liQi~~psr~~~~~y~~~~~ 333 (474)
T PF00982_consen 277 KIIVGVDRLDYTKGIPEKLRAFERFLER-----------------------YPEYRGKVVLIQIAVPSREDVPEYQELRR 333 (474)
T ss_dssp EEEEEE--B-GGG-HHHHHHHHHHHHHH------------------------GGGTTTEEEEEE--B-STTSHHHHHHHH
T ss_pred EEEEEeccchhhcCHHHHHHHHHHHHHh-----------------------CcCccCcEEEEEEeeccCccchhHHHHHH
Confidence 3899999999999999999999988764 112234678876664221 13
Q ss_pred HHHHHHHHc----CC---CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCc----EEEecccc
Q 011969 331 SYEEKIRRL----RL---KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLP----VCAVSYSC 399 (474)
Q Consensus 331 ~~~~~~~~l----~l---~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~P----Via~~~~~ 399 (474)
++++.+.+. |- .-|.++..-++.+++..+|+.||+++. ++..+|+-++..|+.+|..+ +|.|..+|
T Consensus 334 ~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lv---TslrDGmNLva~Eyva~q~~~~GvLiLSefaG 410 (474)
T PF00982_consen 334 EVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAADVALV---TSLRDGMNLVAKEYVACQDDNPGVLILSEFAG 410 (474)
T ss_dssp HHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-SEEEE-----SSBS--HHHHHHHHHS-TS--EEEEETTBG
T ss_pred HHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhhhhEEe---cchhhccCCcceEEEEEecCCCCceEeeccCC
Confidence 344444333 32 136666555999999999999999999 88888999999999999876 66777777
Q ss_pred cccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 400 IEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 400 ~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
..+.+.+ ..++++ |++++|++|.+.++. .+++++...+..++..
T Consensus 411 aa~~L~~--~al~VNP~d~~~~A~ai~~AL~M---~~~Er~~r~~~~~~~v 456 (474)
T PF00982_consen 411 AAEQLSE--AALLVNPWDIEEVADAIHEALTM---PPEERKERHARLREYV 456 (474)
T ss_dssp GGGT-TT--S-EEE-TT-HHHHHHHHHHHHT-----HHHHHHHHHHHHHHH
T ss_pred HHHHcCC--ccEEECCCChHHHHHHHHHHHcC---CHHHHHHHHHHHHHHh
Confidence 7777633 226665 899999999999986 4555555444444444
No 119
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=98.40 E-value=0.00014 Score=77.61 Aligned_cols=165 Identities=7% Similarity=0.047 Sum_probs=115.4
Q ss_pred EEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCC-----C----hHH
Q 011969 261 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP-----D----KES 331 (474)
Q Consensus 261 ~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~-----~----~~~ 331 (474)
+|+.+.|+...||+..=++|+..+.++ ++....++.|+-+.... + +.+
T Consensus 257 lilgVDRLDytKGi~~rl~Afe~fL~~-----------------------~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~ 313 (474)
T PRK10117 257 NIFSVERLDYSKGLPERFLAYEALLEK-----------------------YPQHHGKIRYTQIAPTSRGDVQAYQDIRHQ 313 (474)
T ss_pred EEEEecccccccCHHHHHHHHHHHHHh-----------------------ChhhcCCEEEEEEcCCCCCccHHHHHHHHH
Confidence 889999999999999999999988763 11123457777665322 1 123
Q ss_pred HHHHHHHcCC-------CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCC-----cEEEecccc
Q 011969 332 YEEKIRRLRL-------KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGL-----PVCAVSYSC 399 (474)
Q Consensus 332 ~~~~~~~l~l-------~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~-----PVia~~~~~ 399 (474)
+++.+.+.+- .-|.++..-++.+++..+|+.||+++. ++..+|+-++-.||.||.. .+|-|...|
T Consensus 314 v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lV---TplRDGMNLVAkEyva~q~~~~~GvLILSefAG 390 (474)
T PRK10117 314 LETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLV---TPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAG 390 (474)
T ss_pred HHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEe---cccccccccccchheeeecCCCCccEEEecccc
Confidence 3444444321 137777666899999999999999999 7888888889999999976 377788877
Q ss_pred cccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcc---ccchHHHH
Q 011969 400 IEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGL---SARWATEW 457 (474)
Q Consensus 400 ~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~w~~~~ 457 (474)
.++.+. ..++++ |.++++++|...+.. ..+++++-.+..++... ...|....
T Consensus 391 aA~~L~---~AllVNP~d~~~~A~Ai~~AL~M---p~~Er~~R~~~l~~~v~~~dv~~W~~~f 447 (474)
T PRK10117 391 AANELT---SALIVNPYDRDEVAAALDRALTM---PLAERISRHAEMLDVIVKNDINHWQECF 447 (474)
T ss_pred hHHHhC---CCeEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhhhCCHHHHHHHH
Confidence 777773 246665 899999999999986 44544443333333332 33455544
No 120
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.37 E-value=0.00021 Score=74.50 Aligned_cols=236 Identities=19% Similarity=0.204 Sum_probs=140.1
Q ss_pred cCCCCEEEEeCCCChhHHHHHHHHHhhC-CCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHH
Q 011969 99 IASPDVFLVQNPPSVPTLVAVKWASSLR-RSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAM 177 (474)
Q Consensus 99 ~~~~Dvi~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~ 177 (474)
..+||+++.-+.|.+..- +++.+++.. +.|+|+.+----| -.+... -+.+.+..|.++|+=+..
T Consensus 80 ~~~pd~vIlID~pgFNlr-lak~lk~~~~~~~viyYI~PqvW------AWr~~R--------~~~i~~~~D~ll~ifPFE 144 (373)
T PF02684_consen 80 EEKPDVVILIDYPGFNLR-LAKKLKKRGIPIKVIYYISPQVW------AWRPGR--------AKKIKKYVDHLLVIFPFE 144 (373)
T ss_pred HcCCCEEEEeCCCCccHH-HHHHHHHhCCCceEEEEECCcee------eeCccH--------HHHHHHHHhheeECCccc
Confidence 389999998887776554 355444432 2346665432110 001111 123346789999999998
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCC
Q 011969 178 QHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPN 257 (474)
Q Consensus 178 ~~~l~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (474)
.+++.+ +|.+++.+=++-.+...+... ....++.+ ++++
T Consensus 145 ~~~y~~-~g~~~~~VGHPl~d~~~~~~~--~~~~~~~~--------------------------------------l~~~ 183 (373)
T PF02684_consen 145 PEFYKK-HGVPVTYVGHPLLDEVKPEPD--RAEAREKL--------------------------------------LDPD 183 (373)
T ss_pred HHHHhc-cCCCeEEECCcchhhhccCCC--HHHHHHhc--------------------------------------CCCC
Confidence 877777 588766665543333323221 11111111 2356
Q ss_pred CCeEEEEEeeccc--CCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHH-HHH
Q 011969 258 RPALVVSSTSWTP--DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKES-YEE 334 (474)
Q Consensus 258 ~~~~i~~~G~l~~--~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~-~~~ 334 (474)
.+.+.+.-||=.. .+....+++++..+.++ +|++++++.......++ +++
T Consensus 184 ~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~---------------------------~p~l~fvvp~a~~~~~~~i~~ 236 (373)
T PF02684_consen 184 KPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQ---------------------------RPDLQFVVPVAPEVHEELIEE 236 (373)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHh---------------------------CCCeEEEEecCCHHHHHHHHH
Confidence 6666666666332 35668888999988874 79999998875544443 444
Q ss_pred HHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec-ccccc-----cccccCC
Q 011969 335 KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCIE-----ELVKVDK 408 (474)
Q Consensus 335 ~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~-~~~~~-----e~v~~~~ 408 (474)
.....+. ++...- ...+-...++.||+.+. .| |++.+|++.+|+|.|..- .+.+. -+++...
T Consensus 237 ~~~~~~~-~~~~~~---~~~~~~~~m~~ad~al~---~S-----GTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~ 304 (373)
T PF02684_consen 237 ILAEYPP-DVSIVI---IEGESYDAMAAADAALA---AS-----GTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKY 304 (373)
T ss_pred HHHhhCC-CCeEEE---cCCchHHHHHhCcchhh---cC-----CHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCE
Confidence 4444433 233331 14677889999999998 22 459999999999999763 22111 1111111
Q ss_pred cEE--------Ee-----C--CHHHHHHHHHHHHhC
Q 011969 409 NGL--------LF-----S--SSSELADQLLMLFKG 429 (474)
Q Consensus 409 ~G~--------l~-----~--~~~~la~~i~~l~~~ 429 (474)
.|+ ++ + +++.+++++..++.+
T Consensus 305 isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~ 340 (373)
T PF02684_consen 305 ISLPNIIAGREVVPELIQEDATPENIAAELLELLEN 340 (373)
T ss_pred eechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcC
Confidence 111 11 1 589999999999985
No 121
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.24 E-value=0.00011 Score=80.28 Aligned_cols=245 Identities=12% Similarity=0.077 Sum_probs=141.6
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCC--CcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRR--SAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAM 177 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~ 177 (474)
.+||++++-+.|.+..- +++.+++. | +|+++.+----+ --+.+.. +.+.+..|.++|.=+..
T Consensus 309 ~kPD~vIlID~PgFNlr-LAK~lkk~-Gi~ipviyYVsPqVW------AWR~~Ri--------kki~k~vD~ll~IfPFE 372 (608)
T PRK01021 309 TNPRTVICIDFPDFHFL-LIKKLRKR-GYKGKIVHYVCPSIW------AWRPKRK--------TILEKYLDLLLLILPFE 372 (608)
T ss_pred cCCCEEEEeCCCCCCHH-HHHHHHhc-CCCCCEEEEECccce------eeCcchH--------HHHHHHhhhheecCccC
Confidence 79999998887776554 45655544 5 487765432211 0111111 23346789999999999
Q ss_pred HHHHHHHhCCceEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCC
Q 011969 178 QHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPN 257 (474)
Q Consensus 178 ~~~l~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (474)
.+.+++ .|.+++.+=++-.+...+.. .+.+.++++| ++++
T Consensus 373 ~~~y~~-~gv~v~yVGHPL~d~i~~~~--~~~~~r~~lg-------------------------------------l~~~ 412 (608)
T PRK01021 373 QNLFKD-SPLRTVYLGHPLVETISSFS--PNLSWKEQLH-------------------------------------LPSD 412 (608)
T ss_pred HHHHHh-cCCCeEEECCcHHhhcccCC--CHHHHHHHcC-------------------------------------CCCC
Confidence 988877 58887766554323322111 2234455655 3355
Q ss_pred CCeEEEEEeeccc--CCCHHHHHHHHH--HhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC-hHHH
Q 011969 258 RPALVVSSTSWTP--DEDFGILLEAAL--MYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD-KESY 332 (474)
Q Consensus 258 ~~~~i~~~G~l~~--~k~~~~Li~a~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~-~~~~ 332 (474)
.+.+.+.-|+=.. .+....+++|++ .+ .++.++++....+. .+.+
T Consensus 413 ~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l------------------------------~~~l~fvvp~a~~~~~~~i 462 (608)
T PRK01021 413 KPIVAAFPGSRRGDILRNLTIQVQAFLASSL------------------------------ASTHQLLVSSANPKYDHLI 462 (608)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHHh------------------------------ccCeEEEEecCchhhHHHH
Confidence 6656666665322 245667777776 32 13577777543322 3455
Q ss_pred HHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec-ccccc----------
Q 011969 333 EEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCIE---------- 401 (474)
Q Consensus 333 ~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~-~~~~~---------- 401 (474)
++..+..+.-.+.+... ++-.++++.||+.+. .| |++.+|++.+|+|.|..- .+.+.
T Consensus 463 ~~~~~~~~~~~~~ii~~----~~~~~~m~aaD~aLa---aS-----GTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki 530 (608)
T PRK01021 463 LEVLQQEGCLHSHIVPS----QFRYELMRECDCALA---KC-----GTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKI 530 (608)
T ss_pred HHHHhhcCCCCeEEecC----cchHHHHHhcCeeee---cC-----CHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhc
Confidence 66554433213344422 234789999999998 22 469999999999999853 22111
Q ss_pred --------cccccCC--cEEE---eC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 011969 402 --------ELVKVDK--NGLL---FS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 447 (474)
Q Consensus 402 --------e~v~~~~--~G~l---~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 447 (474)
.++.+.. --++ .+ +++.+++++ .++.+ ++.++++++...+.
T Consensus 531 ~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d----~~~r~~~~~~l~~l 585 (608)
T PRK01021 531 ILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKT----SQSKEKQKDACRDL 585 (608)
T ss_pred cCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcC----HHHHHHHHHHHHHH
Confidence 1111111 1233 12 589999986 77764 66666766666553
No 122
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.23 E-value=0.0012 Score=75.62 Aligned_cols=141 Identities=6% Similarity=0.003 Sum_probs=101.7
Q ss_pred eEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCC-----CCh----H
Q 011969 260 ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-----PDK----E 330 (474)
Q Consensus 260 ~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g-----~~~----~ 330 (474)
.+++.+.++..-||+..=+.|+..+.++ .+....++.|+-+... ++. .
T Consensus 340 ~~ilgVDrlD~~KGi~~kl~A~e~~L~~-----------------------~P~~~gkvvlvQia~psr~~~~~y~~~~~ 396 (854)
T PLN02205 340 IMLLGVDDMDIFKGISLKLLAMEQLLMQ-----------------------HPEWQGKVVLVQIANPARGKGKDVKEVQA 396 (854)
T ss_pred EEEEEccCcccccCHHHHHHHHHHHHHh-----------------------CccccCCEEEEEEecCCCcccHHHHHHHH
Confidence 3899999999999999999999988763 1111234566655532 222 2
Q ss_pred HHHHHHHHc----CC---CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCC-------------
Q 011969 331 SYEEKIRRL----RL---KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGL------------- 390 (474)
Q Consensus 331 ~~~~~~~~l----~l---~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~------------- 390 (474)
++++.+.+. |- .-|.++..-++.+++..+|+.||+++. ++..+|+-++..||.+|..
T Consensus 397 ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~ADv~lV---T~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~ 473 (854)
T PLN02205 397 ETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLV---TAVRDGMNLIPYEYIISRQGNEKLDKLLGLEP 473 (854)
T ss_pred HHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhccEEEe---ccccccccccchheeEEccCcccccccccccc
Confidence 333444432 21 247777665899999999999999999 7888888889999999864
Q ss_pred ------cEEEecccccccccccCCcEEEeC--CHHHHHHHHHHHHhC
Q 011969 391 ------PVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 391 ------PVia~~~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
.+|.|...|.+..+. ..++++ |+++++++|...+..
T Consensus 474 ~~~~~gvLiLSEfaGaa~~L~---~Ai~VNP~d~~~~a~ai~~AL~m 517 (854)
T PLN02205 474 STPKKSMLVVSEFIGCSPSLS---GAIRVNPWNIDAVADAMDSALEM 517 (854)
T ss_pred ccCCCCceEeeeccchhHHhC---cCeEECCCCHHHHHHHHHHHHcC
Confidence 256666666555552 245665 799999999999986
No 123
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.16 E-value=0.00044 Score=71.11 Aligned_cols=277 Identities=19% Similarity=0.176 Sum_probs=148.3
Q ss_pred HHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 011969 24 QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPD 103 (474)
Q Consensus 24 ~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 103 (474)
.+..|-++ ||+|.|.+-..... .++++..|+++..+..+. .+...+.+..+.+ ...++ .+.. ..+||
T Consensus 19 ~I~eL~~~-GheV~it~R~~~~~-~~LL~~yg~~y~~iG~~g-----~~~~~Kl~~~~~R----~~~l~-~~~~-~~~pD 85 (335)
T PF04007_consen 19 IIRELEKR-GHEVLITARDKDET-EELLDLYGIDYIVIGKHG-----DSLYGKLLESIER----QYKLL-KLIK-KFKPD 85 (335)
T ss_pred HHHHHHhC-CCEEEEEEeccchH-HHHHHHcCCCeEEEcCCC-----CCHHHHHHHHHHH----HHHHH-HHHH-hhCCC
Confidence 34666665 99999999665432 367778899999887221 1111222222211 11122 2222 27899
Q ss_pred EEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHHHHHH
Q 011969 104 VFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHELAQ 183 (474)
Q Consensus 104 vi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~ 183 (474)
++++.+.+ . +..++...|+|.|.-..+- ... ...+.....||.+++..---...+.
T Consensus 86 v~is~~s~---~---a~~va~~lgiP~I~f~D~e-~a~----------------~~~~Lt~Pla~~i~~P~~~~~~~~~- 141 (335)
T PF04007_consen 86 VAISFGSP---E---AARVAFGLGIPSIVFNDTE-HAI----------------AQNRLTLPLADVIITPEAIPKEFLK- 141 (335)
T ss_pred EEEecCcH---H---HHHHHHHhCCCeEEEecCc-hhh----------------ccceeehhcCCeeECCcccCHHHHH-
Confidence 99987732 1 2344678889988765543 100 0112334578888877654443333
Q ss_pred HhCCceEEE-eCCCC-----CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCC
Q 011969 184 NWGIKATVL-YDQPP-----EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPN 257 (474)
Q Consensus 184 ~~~~~~~vi-~n~~~-----~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (474)
++|.+-.+. ++|.. ..|.|. .++++++|. . +
T Consensus 142 ~~G~~~~i~~y~G~~E~ayl~~F~Pd-----~~vl~~lg~-------------------------------------~-~ 178 (335)
T PF04007_consen 142 RFGAKNQIRTYNGYKELAYLHPFKPD-----PEVLKELGL-------------------------------------D-D 178 (335)
T ss_pred hcCCcCCEEEECCeeeEEeecCCCCC-----hhHHHHcCC-------------------------------------C-C
Confidence 356652233 66632 124443 455566661 1 2
Q ss_pred CCeEEEEEeecc--cCC-CHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHH
Q 011969 258 RPALVVSSTSWT--PDE-DFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEE 334 (474)
Q Consensus 258 ~~~~i~~~G~l~--~~k-~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~ 334 (474)
.+++++=...+. ... .-+.+-+.+..+.+ ..+. ++++....+.. +
T Consensus 179 ~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~----------------------------~~~~-vV~ipr~~~~~---~ 226 (335)
T PF04007_consen 179 EPYIVVRPEAWKASYDNGKKSILPEIIEELEK----------------------------YGRN-VVIIPRYEDQR---E 226 (335)
T ss_pred CCEEEEEeccccCeeecCccchHHHHHHHHHh----------------------------hCce-EEEecCCcchh---h
Confidence 333333111111 011 12334455555555 2334 55555443322 2
Q ss_pred HHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc---ccccccccCCcEE
Q 011969 335 KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS---CIEELVKVDKNGL 411 (474)
Q Consensus 335 ~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~---~~~e~v~~~~~G~ 411 (474)
..++++ +.+... .-+...++..||++|- . | |.-..||..+|+|.|.+.-+ +..+.+.+ .|+
T Consensus 227 ~~~~~~---~~i~~~---~vd~~~Ll~~a~l~Ig----~-g---gTMa~EAA~LGtPaIs~~~g~~~~vd~~L~~--~Gl 290 (335)
T PF04007_consen 227 LFEKYG---VIIPPE---PVDGLDLLYYADLVIG----G-G---GTMAREAALLGTPAISCFPGKLLAVDKYLIE--KGL 290 (335)
T ss_pred HHhccC---ccccCC---CCCHHHHHHhcCEEEe----C-C---cHHHHHHHHhCCCEEEecCCcchhHHHHHHH--CCC
Confidence 233332 444433 4466789999999996 2 2 34679999999999987432 33344433 355
Q ss_pred Ee--CCHHHHHHHHHHHHh
Q 011969 412 LF--SSSSELADQLLMLFK 428 (474)
Q Consensus 412 l~--~~~~~la~~i~~l~~ 428 (474)
+. .|++++.+.+.....
T Consensus 291 l~~~~~~~ei~~~v~~~~~ 309 (335)
T PF04007_consen 291 LYHSTDPDEIVEYVRKNLG 309 (335)
T ss_pred eEecCCHHHHHHHHHHhhh
Confidence 55 579988886666544
No 124
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.13 E-value=0.0002 Score=73.37 Aligned_cols=112 Identities=16% Similarity=0.257 Sum_probs=89.8
Q ss_pred CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCC---CchHHHHHHhcCCcEEEecccccccccccCCcEEEeCCHHH
Q 011969 342 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLD---LPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSSE 418 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~---~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~~~~~ 418 (474)
+++...|...+...++..++..|+.+.-.+.+.-++ +++.++|+++||.|.++....+++-.+.+++.-++..|..+
T Consensus 237 ~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~~liT~~~~~~e~~f~pgk~~iv~~d~kd 316 (373)
T COG4641 237 PNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGGFLITDYWKDLEKFFKPGKDIIVYQDSKD 316 (373)
T ss_pred chhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCCccccccHHHHHHhcCCchheEEecCHHH
Confidence 467777763445899999999999998544442233 48999999999999999999999999988888888889999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHH
Q 011969 419 LADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEW 457 (474)
Q Consensus 419 la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~ 457 (474)
+.+++..++.+ ++.++++.+++.+-. .+++.++.-
T Consensus 317 l~~~~~yll~h----~~erkeiae~~ye~V~~~ht~~~r~ 352 (373)
T COG4641 317 LKEKLKYLLNH----PDERKEIAECAYERVLARHTYEERI 352 (373)
T ss_pred HHHHHHHHhcC----cchHHHHHHhhHHHHHHhccHHHHH
Confidence 99999999998 778999999998744 345555544
No 125
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.13 E-value=0.00022 Score=75.27 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=85.0
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHH
Q 011969 255 KPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEE 334 (474)
Q Consensus 255 ~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~ 334 (474)
..++|.+.+..|+.... ..+++.+..... .-+.++++...+.. .
T Consensus 234 ~~d~~~vyvslGt~~~~---~~l~~~~~~a~~----------------------------~l~~~vi~~~~~~~-~---- 277 (406)
T COG1819 234 PADRPIVYVSLGTVGNA---VELLAIVLEALA----------------------------DLDVRVIVSLGGAR-D---- 277 (406)
T ss_pred cCCCCeEEEEcCCcccH---HHHHHHHHHHHh----------------------------cCCcEEEEeccccc-c----
Confidence 45677677777777655 444444443333 13566766664311 1
Q ss_pred HHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----cccccccccCCc
Q 011969 335 KIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVKVDKN 409 (474)
Q Consensus 335 ~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~v~~~~~ 409 (474)
..-++ +|+...+. +|+.+ ++..||++|+. ...+ .+.||+.+|+|+|+-.. ...++-++.-+.
T Consensus 278 --~~~~~p~n~~v~~~-~p~~~---~l~~ad~vI~h--GG~g-----tt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~ 344 (406)
T COG1819 278 --TLVNVPDNVIVADY-VPQLE---LLPRADAVIHH--GGAG-----TTSEALYAGVPLVVIPDGADQPLNAERVEELGA 344 (406)
T ss_pred --ccccCCCceEEecC-CCHHH---HhhhcCEEEec--CCcc-----hHHHHHHcCCCEEEecCCcchhHHHHHHHHcCC
Confidence 11223 57888765 66655 89999999982 1233 89999999999999753 345566777888
Q ss_pred EEEeC----CHHHHHHHHHHHHhC
Q 011969 410 GLLFS----SSSELADQLLMLFKG 429 (474)
Q Consensus 410 G~l~~----~~~~la~~i~~l~~~ 429 (474)
|.... +.+.+++++++++.+
T Consensus 345 G~~l~~~~l~~~~l~~av~~vL~~ 368 (406)
T COG1819 345 GIALPFEELTEERLRAAVNEVLAD 368 (406)
T ss_pred ceecCcccCCHHHHHHHHHHHhcC
Confidence 97764 599999999999995
No 126
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=98.13 E-value=0.00059 Score=69.44 Aligned_cols=333 Identities=15% Similarity=0.143 Sum_probs=169.0
Q ss_pred CCCceEEEEEe--CCCCCCchHHHHHHHHHhh-CCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCc---hh
Q 011969 2 GRRGRACVVVL--GDLGRSPRMQYQALSLARQ-MSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPK---VL 75 (474)
Q Consensus 2 ~~~~~~~i~~~--~~~g~~~r~~~~a~~l~~~-~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~---~~ 75 (474)
.+++|+++.+- -.+|+--|....|.+|.+. .|.+|.+|+-... ........||++.++|.-.....+... .-
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~--~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~ 84 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPP--AGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLD 84 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCc--cCCCCCcccCceEecCceEecCCCceeeeecC
Confidence 34555554333 3467788999999999886 6899999985532 233444569999999832111111111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhh--CCCcEEEEecCchhhhhhhccCCCchHH
Q 011969 76 KPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSL--RRSAFIVDWHNFGYTLLSLSLGRRSHFV 153 (474)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~h~~~~~~~~~~~~~~~~~~ 153 (474)
-.+....+.-.+ ++..-. +..+||++++...|.-.-.-+.=++..+ .+++.+.-..+.-.... .....++
T Consensus 85 ~~l~e~~~~Rs~---lil~t~-~~fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~lr~i~D~p~----~~~~~w~ 156 (400)
T COG4671 85 GDLEETKKLRSQ---LILSTA-ETFKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGLRSIRDIPQ----ELEADWR 156 (400)
T ss_pred CCHHHHHHHHHH---HHHHHH-HhcCCCEEEEeccccchhhhhhHHHHHHhhcCCcceeehHhhhhchh----hhccchh
Confidence 111122222111 111222 2378999999875432111111122222 23455554444311000 0111111
Q ss_pred HHHHHHHHHHhhhcCEEEEeCHHHHHHHHHHhCCc----eEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccc
Q 011969 154 SIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGIK----ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCV 229 (474)
Q Consensus 154 ~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~----~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 229 (474)
+ ...++.+.++-|.|++...-.-..+.+.++.. ..+.|.|-...--|. .+++.
T Consensus 157 ~--~~~~~~I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~~-----------------~~~p~---- 213 (400)
T COG4671 157 R--AETVRLINRFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLPH-----------------LPLPP---- 213 (400)
T ss_pred h--hHHHHHHHHhheEEEEecCccccChhhcCCccHhhhhheeEeEEeeccCcC-----------------CCCCC----
Confidence 1 13334444455666666554433333333321 222222211000000 00000
Q ss_pred cccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcC
Q 011969 230 SNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISD 309 (474)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (474)
...+....+++.+|.- .-|.+++-.+++....
T Consensus 214 -----------------------~~~pE~~~Ilvs~GGG--~dG~eLi~~~l~A~~~----------------------- 245 (400)
T COG4671 214 -----------------------HEAPEGFDILVSVGGG--ADGAELIETALAAAQL----------------------- 245 (400)
T ss_pred -----------------------cCCCccceEEEecCCC--hhhHHHHHHHHHHhhh-----------------------
Confidence 0113333466666653 3355544444444322
Q ss_pred CccccCCCE---EEEEEeCCCChHHHHHHHHHcC-CCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHH
Q 011969 310 GKQYLYPRL---LFIITGKGPDKESYEEKIRRLR-LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDM 385 (474)
Q Consensus 310 ~~~~~~~~~---~l~ivG~g~~~~~~~~~~~~l~-l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Ea 385 (474)
.+++ -+++.|.--.++..++....-. .++|....+ ..++..++..|+..|.. ..+ +++.|-
T Consensus 246 -----l~~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f---~~~~~~ll~gA~~vVSm--~GY-----NTvCeI 310 (400)
T COG4671 246 -----LAGLNHKWLIVTGPFMPEAQRQKLLASAPKRPHISIFEF---RNDFESLLAGARLVVSM--GGY-----NTVCEI 310 (400)
T ss_pred -----CCCCCcceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEh---hhhHHHHHHhhheeeec--ccc-----hhhhHH
Confidence 2333 4677775433444444444433 268999988 89999999999999973 223 389999
Q ss_pred HhcCCcEEEeccccc--ccccccC---CcE---EEeC---CHHHHHHHHHHHHhCC
Q 011969 386 FGCGLPVCAVSYSCI--EELVKVD---KNG---LLFS---SSSELADQLLMLFKGF 430 (474)
Q Consensus 386 ma~G~PVia~~~~~~--~e~v~~~---~~G---~l~~---~~~~la~~i~~l~~~~ 430 (474)
+++|+|.+....... +.++... +-| ++.+ +++.|+++|...++.+
T Consensus 311 Ls~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~P 366 (400)
T COG4671 311 LSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALARP 366 (400)
T ss_pred HhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccCC
Confidence 999999999874322 2222211 233 3333 4899999999998853
No 127
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.13 E-value=9.6e-05 Score=78.73 Aligned_cols=143 Identities=13% Similarity=0.097 Sum_probs=94.3
Q ss_pred ccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC-hHHHHHHHHHcCC--CcEE
Q 011969 269 TPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD-KESYEEKIRRLRL--KRVA 345 (474)
Q Consensus 269 ~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~-~~~~~~~~~~l~l--~~V~ 345 (474)
...|=-+..+++...+.++ .|+.+|++...+.. .+.+++.+++.|+ +++.
T Consensus 293 ~~~KI~p~~l~~W~~IL~~---------------------------vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~ 345 (468)
T PF13844_consen 293 NLFKISPETLDLWARILKA---------------------------VPNSRLWLLRFPASGEARLRRRFAAHGVDPDRII 345 (468)
T ss_dssp -GGG--HHHHHHHHHHHHH---------------------------STTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEE
T ss_pred ccccCCHHHHHHHHHHHHh---------------------------CCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEE
Confidence 3456666777887777774 79999988775543 4678888999999 6999
Q ss_pred EecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccccccc-----ccc-cCCcEEEeCCHHHH
Q 011969 346 FRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEE-----LVK-VDKNGLLFSSSSEL 419 (474)
Q Consensus 346 f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e-----~v~-~~~~G~l~~~~~~l 419 (474)
|.+. .+.++....++.+|+++=+ ...+=+...+||+.+|+|||+-....+.. ++. -|-..+++.|.++.
T Consensus 346 f~~~-~~~~ehl~~~~~~DI~LDT----~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~s~~eY 420 (468)
T PF13844_consen 346 FSPV-APREEHLRRYQLADICLDT----FPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIADSEEEY 420 (468)
T ss_dssp EEE----HHHHHHHGGG-SEEE------SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-SSHHHH
T ss_pred EcCC-CCHHHHHHHhhhCCEEeeC----CCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCCCHHHH
Confidence 9987 8888888899999999973 22223679999999999999875332221 111 12233566789999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 011969 420 ADQLLMLFKGFPDDSDVLKKLRNGTLEM 447 (474)
Q Consensus 420 a~~i~~l~~~~~~~~~~~~~~~~~~~~~ 447 (474)
.+...++.++ ++.++++|+..++.
T Consensus 421 v~~Av~La~D----~~~l~~lR~~Lr~~ 444 (468)
T PF13844_consen 421 VEIAVRLATD----PERLRALRAKLRDR 444 (468)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC----HHHHHHHHHHHHHH
Confidence 9999999995 88888888888653
No 128
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.11 E-value=0.0014 Score=71.13 Aligned_cols=89 Identities=12% Similarity=0.117 Sum_probs=61.7
Q ss_pred CcEEEecCCCCcccHHHHH--hcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----cccccccccCCcEEEeC-
Q 011969 342 KRVAFRTMWLSAEDYPLLL--GSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVKVDKNGLLFS- 414 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l--~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~v~~~~~G~l~~- 414 (474)
+||.+.+ |+|+.+ ++ ..++++|. +|. ...+.||+.+|+|+|+... ......+...+.|...+
T Consensus 346 ~Nv~i~~-w~Pq~~---lL~hp~v~~fIt-----HGG--~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~ 414 (507)
T PHA03392 346 ANVLTQK-WFPQRA---VLKHKNVKAFVT-----QGG--VQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDT 414 (507)
T ss_pred CceEEec-CCCHHH---HhcCCCCCEEEe-----cCC--cccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEecc
Confidence 6888875 588754 56 45788886 221 2379999999999999863 33445555667787764
Q ss_pred ---CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 011969 415 ---SSSELADQLLMLFKGFPDDSDVLKKLRNGTL 445 (474)
Q Consensus 415 ---~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~ 445 (474)
+.+++.++|.+++++ +..+++.++-+.
T Consensus 415 ~~~t~~~l~~ai~~vl~~----~~y~~~a~~ls~ 444 (507)
T PHA03392 415 VTVSAAQLVLAIVDVIEN----PKYRKNLKELRH 444 (507)
T ss_pred CCcCHHHHHHHHHHHhCC----HHHHHHHHHHHH
Confidence 589999999999984 544444444333
No 129
>PLN02448 UDP-glycosyltransferase family protein
Probab=98.10 E-value=0.015 Score=62.52 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=62.5
Q ss_pred CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----cccccccccC-CcEEEe---
Q 011969 342 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVKVD-KNGLLF--- 413 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~v~~~-~~G~l~--- 413 (474)
+++.+. .|+|+.+ ++.+.++..+. +++. -+.++||+++|+|+|+... ......+.+. +.|+-+
T Consensus 323 ~~~~v~-~w~pQ~~---iL~h~~v~~fv---tHgG--~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~ 393 (459)
T PLN02448 323 DMGLVV-PWCDQLK---VLCHSSVGGFW---THCG--WNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKRE 393 (459)
T ss_pred CCEEEe-ccCCHHH---HhccCccceEE---ecCc--hhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecc
Confidence 366666 4788766 56678885552 3321 2489999999999999753 3333444332 455554
Q ss_pred ------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 414 ------SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 414 ------~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
-+.+++++++++++.+ ..++.+++|+++.++.
T Consensus 394 ~~~~~~~~~~~l~~av~~vl~~---~~~~~~~~r~~a~~~~ 431 (459)
T PLN02448 394 VGEETLVGREEIAELVKRFMDL---ESEEGKEMRRRAKELQ 431 (459)
T ss_pred cccCCcCcHHHHHHHHHHHhcC---CchhHHHHHHHHHHHH
Confidence 1578999999999974 1245667777776643
No 130
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=98.10 E-value=0.015 Score=62.38 Aligned_cols=148 Identities=12% Similarity=0.084 Sum_probs=108.8
Q ss_pred eEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh--H-------
Q 011969 260 ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK--E------- 330 (474)
Q Consensus 260 ~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~--~------- 330 (474)
.+++.+-|+..-||+..=+.|+..+.+. .+....++.|+-++..... +
T Consensus 283 kiivgvDRlDy~kGi~~rl~Afe~lL~~-----------------------~Pe~~~kvvliQi~~pSr~~v~~y~~~~~ 339 (486)
T COG0380 283 KLIVGVDRLDYSKGIPQRLLAFERLLEE-----------------------YPEWRGKVVLLQIAPPSREDVEEYQALRL 339 (486)
T ss_pred eEEEEehhcccccCcHHHHHHHHHHHHh-----------------------ChhhhCceEEEEecCCCccccHHHHHHHH
Confidence 4899999999999999999999988763 1112345777777754321 2
Q ss_pred HHHHHHHH----cCC---CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcC----CcEEEecccc
Q 011969 331 SYEEKIRR----LRL---KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG----LPVCAVSYSC 399 (474)
Q Consensus 331 ~~~~~~~~----l~l---~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G----~PVia~~~~~ 399 (474)
++++.+.+ +|- .-|.|+..-++.+++..+|+.||+++. ++-.+|+-++..|+.||- =|.|-|...|
T Consensus 340 ~i~~~V~rIN~~fG~~~~~Pv~~l~~~~~~~~l~al~~~aDv~lV---tplrDGMNLvakEyVa~q~~~~G~LiLSeFaG 416 (486)
T COG0380 340 QIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLV---TPLRDGMNLVAKEYVAAQRDKPGVLILSEFAG 416 (486)
T ss_pred HHHHHHHHHHhhcCCCCcceeEEEeccCCHHHHHHHHhhhceeee---ccccccccHHHHHHHHhhcCCCCcEEEecccc
Confidence 22233332 222 247777776899999999999999999 788888999999999985 4778888777
Q ss_pred cccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHH
Q 011969 400 IEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKK 439 (474)
Q Consensus 400 ~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~ 439 (474)
.+..+.+ .++++ |.++++++|...++. .++++++
T Consensus 417 aa~~L~~---AliVNP~d~~~va~ai~~AL~m---~~eEr~~ 452 (486)
T COG0380 417 AASELRD---ALIVNPWDTKEVADAIKRALTM---SLEERKE 452 (486)
T ss_pred chhhhcc---CEeECCCChHHHHHHHHHHhcC---CHHHHHH
Confidence 7766633 56775 799999999999986 4554444
No 131
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=98.08 E-value=0.0013 Score=66.30 Aligned_cols=229 Identities=15% Similarity=0.151 Sum_probs=136.6
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (474)
.+.+-+++|+-... .+.++.+..+....+ +.||-+|-..+ -...+.-.+++..+.|.+.++..+|++ ++..-.
T Consensus 38 ~r~~rff~HGqFn~-~lwlall~g~~~~~q--~yWhiWGaDLY---e~~~~lk~rlfy~lRR~aq~rvg~v~a-trGD~~ 110 (322)
T PRK02797 38 NRAQRFFLHGQFNP-TLWLALLSGKIKPKQ--FYWHIWGADLY---EESKGLKFRLFYPLRRLAQKRVGHVFA-TRGDLS 110 (322)
T ss_pred CccceEEEecCCCH-HHHHHHHhCCcCccc--eEEEEEChhhh---hcccchhHHHHHHHHHHHHhhcCeEEE-ecchHH
Confidence 67788888885432 332333333333333 45666553333 112333346777888999999999999 555555
Q ss_pred HH-HHHhCCceEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCC
Q 011969 180 EL-AQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNR 258 (474)
Q Consensus 180 ~l-~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (474)
++ ++.++.+...++- |+.......... . ...+..
T Consensus 111 ~~a~~~~~v~~~llyf-------pt~m~~~l~~~~------------~--------------------------~~~~~~ 145 (322)
T PRK02797 111 YFAQRHPKVPGSLLYF-------PTRMDPSLNTMA------------N--------------------------DRQRAG 145 (322)
T ss_pred HHHHhcCCCCccEEec-------CCcchhhhcccc------------c--------------------------cccCCC
Confidence 64 4555666554333 221111000000 0 011223
Q ss_pred CeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEE-EeCC--CC--hHHHH
Q 011969 259 PALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFII-TGKG--PD--KESYE 333 (474)
Q Consensus 259 ~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i-vG~g--~~--~~~~~ 333 (474)
+.+|+..-+-++..+...++++++... ..++++++ .|.+ .. .++++
T Consensus 146 ~~tIlvGNSgd~SN~Hie~L~~l~~~~-----------------------------~~~v~ii~PlsYp~gn~~Yi~~V~ 196 (322)
T PRK02797 146 KMTILVGNSGDRSNRHIEALRALHQQF-----------------------------GDNVKIIVPMGYPANNQAYIEEVR 196 (322)
T ss_pred ceEEEEeCCCCCcccHHHHHHHHHHHh-----------------------------CCCeEEEEECCcCCCCHHHHHHHH
Confidence 445665556677777766667766542 46777755 3442 21 25566
Q ss_pred HHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec-ccccccccccCCcEE
Q 011969 334 EKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCIEELVKVDKNGL 411 (474)
Q Consensus 334 ~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~-~~~~~e~v~~~~~G~ 411 (474)
+.++++-- +++..+...+|.+|+..+++.||++++.+ .+-.++| .++=.+.+|+||+.+. .+...++.+.+ .-+
T Consensus 197 ~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~--~RQQgiG-nl~lLi~~G~~v~l~r~n~fwqdl~e~g-v~V 272 (322)
T PRK02797 197 QAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIF--ARQQGIG-TLCLLIQLGKPVVLSRDNPFWQDLTEQG-LPV 272 (322)
T ss_pred HHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEee--chhhHHh-HHHHHHHCCCcEEEecCCchHHHHHhCC-CeE
Confidence 66666644 68999888899999999999999999952 2445577 5677899999999986 56666655443 334
Q ss_pred Ee
Q 011969 412 LF 413 (474)
Q Consensus 412 l~ 413 (474)
++
T Consensus 273 lf 274 (322)
T PRK02797 273 LF 274 (322)
T ss_pred Ee
Confidence 34
No 132
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.003 Score=67.93 Aligned_cols=148 Identities=15% Similarity=0.176 Sum_probs=98.3
Q ss_pred CCCEEEEEEeCCCCh---HHHHHHHHHcCC--CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcC
Q 011969 315 YPRLLFIITGKGPDK---ESYEEKIRRLRL--KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG 389 (474)
Q Consensus 315 ~~~~~l~ivG~g~~~---~~~~~~~~~l~l--~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G 389 (474)
.|+=.|++-|.|++. +.+++.+++.|+ +++.|.+. .+.++....|+-||+++= ++..+=..+.+|++.+|
T Consensus 457 vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~-~~~~~h~a~~~iADlvLD----TyPY~g~TTa~daLwm~ 531 (620)
T COG3914 457 VPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPP-APNEDHRARYGIADLVLD----TYPYGGHTTASDALWMG 531 (620)
T ss_pred CCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCC-CCCHHHHHhhchhheeee----cccCCCccchHHHHHhc
Confidence 699999999987654 678889999999 69999999 999999999999999995 55555567999999999
Q ss_pred CcEEEecccccc-----cccc-cCCcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccc-cchH-HHHHHHH
Q 011969 390 LPVCAVSYSCIE-----ELVK-VDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLS-ARWA-TEWEEHA 461 (474)
Q Consensus 390 ~PVia~~~~~~~-----e~v~-~~~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~w~-~~~~~~~ 461 (474)
+||++-...... .++. -|-.-+++.+.++..+.-..+-+ |...+++.+..-.+..+. -=|+ .....-+
T Consensus 532 vPVlT~~G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~g~----dral~q~~r~~l~~~r~tspL~d~~~far~l 607 (620)
T COG3914 532 VPVLTRVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGS----DRALRQQVRAELKRSRQTSPLFDPKAFARKL 607 (620)
T ss_pred CceeeeccHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHhcc----cHHHHHhhHHHHHhccccCcccCHHHHHHHH
Confidence 999986422111 1221 13334555666666666666655 355666666555443211 1133 2223334
Q ss_pred HHHHHHHhhc
Q 011969 462 KPLITEVISQ 471 (474)
Q Consensus 462 ~~~~~~~~~~ 471 (474)
+.++.++.++
T Consensus 608 e~~y~~M~~~ 617 (620)
T COG3914 608 ETLYWGMWSE 617 (620)
T ss_pred HHHHHHHHHh
Confidence 5555555444
No 133
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=97.95 E-value=0.0026 Score=64.89 Aligned_cols=246 Identities=16% Similarity=0.172 Sum_probs=142.2
Q ss_pred cCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHH
Q 011969 99 IASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (474)
Q Consensus 99 ~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (474)
..+.+-+++|+-.... +.++.+..+.+..++ .||-+|-..+. ...+.-.+++..+.+.+.++..+|++ ++..-
T Consensus 76 ~~r~~kff~HGqFn~~-lwlaLl~g~~~~~k~--~WhIWGaDLYe---~~~~~k~rlfy~lRr~aq~rvg~V~a-t~GDl 148 (360)
T PF07429_consen 76 ADRADKFFLHGQFNPW-LWLALLFGKIKLKKC--YWHIWGADLYE---DSRSLKFRLFYFLRRLAQKRVGHVFA-TRGDL 148 (360)
T ss_pred hCccceEEEeccCcHH-HHHHHHcCCccccce--EEEEeCchhhc---cccccchhHHHHHHHHHHhhcCeEEE-EcchH
Confidence 3778888888854433 323444444444443 35555432221 11222235556778888888888876 56666
Q ss_pred HHHHHHhCCc-eEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCC
Q 011969 179 HELAQNWGIK-ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPN 257 (474)
Q Consensus 179 ~~l~~~~~~~-~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (474)
.+.++.++.. ...++- |+.......... ......
T Consensus 149 ~~~~q~~~~~~~~~lyf-------Pt~m~~~~~~~~--------------------------------------~~~~~~ 183 (360)
T PF07429_consen 149 AYFQQRYPRVPASLLYF-------PTRMDPALTLSE--------------------------------------KNKKNK 183 (360)
T ss_pred HHHHHHcCCCCceEEEc-------CCCCchhhhccc--------------------------------------cccCCC
Confidence 6788877543 333333 221100000000 001123
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEE-EeCCCCh----HHH
Q 011969 258 RPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFII-TGKGPDK----ESY 332 (474)
Q Consensus 258 ~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i-vG~g~~~----~~~ 332 (474)
.+..|+..-+-++..+.-.++++++.. ...++++++ .|.|... +++
T Consensus 184 ~~ltILvGNSgd~sNnHieaL~~L~~~-----------------------------~~~~~kIivPLsYg~~n~~Yi~~V 234 (360)
T PF07429_consen 184 GKLTILVGNSGDPSNNHIEALEALKQQ-----------------------------FGDDVKIIVPLSYGANNQAYIQQV 234 (360)
T ss_pred CceEEEEcCCCCCCccHHHHHHHHHHh-----------------------------cCCCeEEEEECCCCCchHHHHHHH
Confidence 454666666677777776666666653 235666644 4555432 445
Q ss_pred HHHHHHc-CCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEE
Q 011969 333 EEKIRRL-RLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGL 411 (474)
Q Consensus 333 ~~~~~~l-~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~ 411 (474)
.+.++++ +.+++..+..++|.+|+..+++.||++++. ..+-.++| .++=.+.+|+||+-+.....-..+.+.+.-+
T Consensus 235 ~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~--~~RQQgiG-nI~lLl~~G~~v~L~~~np~~~~l~~~~ipV 311 (360)
T PF07429_consen 235 IQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFN--HNRQQGIG-NICLLLQLGKKVFLSRDNPFWQDLKEQGIPV 311 (360)
T ss_pred HHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEe--echhhhHh-HHHHHHHcCCeEEEecCChHHHHHHhCCCeE
Confidence 5555655 335888877669999999999999999995 23446677 5677999999999997554444444444334
Q ss_pred EeC----CHHHHHHHHHHHHh
Q 011969 412 LFS----SSSELADQLLMLFK 428 (474)
Q Consensus 412 l~~----~~~~la~~i~~l~~ 428 (474)
++. |.+.+.++=+++..
T Consensus 312 lf~~d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 312 LFYGDELDEALVREAQRQLAN 332 (360)
T ss_pred EeccccCCHHHHHHHHHHHhh
Confidence 443 35555555555544
No 134
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.94 E-value=0.02 Score=60.98 Aligned_cols=101 Identities=13% Similarity=0.115 Sum_probs=64.7
Q ss_pred HHHHHHcCC-CcEEE-ecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc----cccccccc
Q 011969 333 EEKIRRLRL-KRVAF-RTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELVKV 406 (474)
Q Consensus 333 ~~~~~~l~l-~~V~f-~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~----~~~e~v~~ 406 (474)
++..+.+.- .++++ ... .+..++..++++||++|- ...+ .++=|++.|+|+++..+. ++-+.+.
T Consensus 297 ~~l~~~~~~~~~~~vi~~~-~~~~e~~~iIs~~dl~ig---~RlH-----a~I~a~~~gvP~i~i~Y~~K~~~~~~~lg- 366 (426)
T PRK10017 297 LNLRQHVSDPARYHVVMDE-LNDLEMGKILGACELTVG---TRLH-----SAIISMNFGTPAIAINYEHKSAGIMQQLG- 366 (426)
T ss_pred HHHHHhcccccceeEecCC-CChHHHHHHHhhCCEEEE---ecch-----HHHHHHHcCCCEEEeeehHHHHHHHHHcC-
Confidence 444455443 34443 333 456788899999999997 3333 679999999999998752 2222221
Q ss_pred CCcEEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 011969 407 DKNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 447 (474)
Q Consensus 407 ~~~G~l~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 447 (474)
...++++ +.++|.+.+..++++ .++..++++++..+.
T Consensus 367 -~~~~~~~~~~l~~~~Li~~v~~~~~~---r~~~~~~l~~~v~~~ 407 (426)
T PRK10017 367 -LPEMAIDIRHLLDGSLQAMVADTLGQ---LPALNARLAEAVSRE 407 (426)
T ss_pred -CccEEechhhCCHHHHHHHHHHHHhC---HHHHHHHHHHHHHHH
Confidence 1223332 578899999999986 344555566666553
No 135
>PLN02208 glycosyltransferase family protein
Probab=97.91 E-value=0.05 Score=58.17 Aligned_cols=114 Identities=13% Similarity=0.156 Sum_probs=72.5
Q ss_pred cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----cccccc-cccCCcEEEeC---
Q 011969 343 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEEL-VKVDKNGLLFS--- 414 (474)
Q Consensus 343 ~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~-v~~~~~G~l~~--- 414 (474)
++.+. .|+|+.+ +|++..+..+. +++. -+.++||+++|+|+|+... .....+ +..-+.|+..+
T Consensus 312 g~~v~-~W~PQ~~---iL~H~~v~~Fv---tHcG--~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~ 382 (442)
T PLN02208 312 GVVWG-GWVQQPL---ILDHPSIGCFV---NHCG--PGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREK 382 (442)
T ss_pred CcEee-ccCCHHH---HhcCCccCeEE---ccCC--chHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEecccc
Confidence 45554 4788876 68888887773 4331 2489999999999999863 223333 33346676662
Q ss_pred ----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHHh
Q 011969 415 ----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSAR-WATEWEEHAKPLITEVI 469 (474)
Q Consensus 415 ----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~ 469 (474)
+.+++++++++++++ ..+..+++++++.+..+... =..++ +.++.++++++
T Consensus 383 ~~~~~~~~l~~ai~~~m~~---~~e~g~~~r~~~~~~~~~~~~~gsS~-~~l~~~v~~l~ 438 (442)
T PLN02208 383 TGWFSKESLSNAIKSVMDK---DSDLGKLVRSNHTKLKEILVSPGLLT-GYVDKFVEELQ 438 (442)
T ss_pred CCcCcHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHH
Confidence 578999999999975 23556778888776532211 11233 34566666654
No 136
>PLN02173 UDP-glucosyl transferase family protein
Probab=97.84 E-value=0.058 Score=57.83 Aligned_cols=92 Identities=12% Similarity=0.213 Sum_probs=62.7
Q ss_pred CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----cccccccccC-CcEEEeC--
Q 011969 342 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVKVD-KNGLLFS-- 414 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~v~~~-~~G~l~~-- 414 (474)
+++.+. .|+|+.+ ++.+.++..+. +++. -+.++||+++|+|+|+... ......+.+. +.|+-+.
T Consensus 317 ~~~~i~-~W~PQ~~---iL~H~~v~~Fv---tHcG--wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~ 387 (449)
T PLN02173 317 DKSLVL-KWSPQLQ---VLSNKAIGCFM---THCG--WNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAE 387 (449)
T ss_pred CceEEe-CCCCHHH---HhCCCccceEE---ecCc--cchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeec
Confidence 467777 4788655 68888877773 3331 2489999999999999852 3334444432 5665542
Q ss_pred ------CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 011969 415 ------SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 447 (474)
Q Consensus 415 ------~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 447 (474)
+.+++++++++++.+ ++.+++|+++.++
T Consensus 388 ~~~~~~~~e~v~~av~~vm~~-----~~~~~~r~~a~~~ 421 (449)
T PLN02173 388 KESGIAKREEIEFSIKEVMEG-----EKSKEMKENAGKW 421 (449)
T ss_pred ccCCcccHHHHHHHHHHHhcC-----ChHHHHHHHHHHH
Confidence 578999999999974 2245666666654
No 137
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.75 E-value=0.003 Score=64.42 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=70.3
Q ss_pred CCCCeEEEEEee-cccCCCHH--HHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHH
Q 011969 256 PNRPALVVSSTS-WTPDEDFG--ILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 332 (474)
Q Consensus 256 ~~~~~~i~~~G~-l~~~k~~~--~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~ 332 (474)
+++|++++..|. +.+.|... ...+.+..+.+ .+..++++|...+++..
T Consensus 172 ~~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~-----------------------------~~~~ivl~G~~~e~~~~ 222 (334)
T TIGR02195 172 TERPIIAFCPGAEFGPAKRWPHEHYAELAKRLID-----------------------------QGYQVVLFGSAKDHPAG 222 (334)
T ss_pred CCCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHH-----------------------------CCCEEEEEEChhhHHHH
Confidence 356667777765 44555444 66666666544 24678899977666655
Q ss_pred HHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec
Q 011969 333 EEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 333 ~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~ 396 (474)
++..+..+-..+.+.|. .+-.++..+++.||++|. ..+| .+==|.|+|+|+|+--
T Consensus 223 ~~i~~~~~~~~~~l~g~-~sL~el~ali~~a~l~I~---~DSG-----p~HlAaA~~~P~i~lf 277 (334)
T TIGR02195 223 NEIEALLPGELRNLAGE-TSLDEAVDLIALAKAVVT---NDSG-----LMHVAAALNRPLVALY 277 (334)
T ss_pred HHHHHhCCcccccCCCC-CCHHHHHHHHHhCCEEEe---eCCH-----HHHHHHHcCCCEEEEE
Confidence 55544433223456777 889999999999999998 4555 3445789999999864
No 138
>PLN02562 UDP-glycosyltransferase
Probab=97.70 E-value=0.11 Score=55.67 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=55.0
Q ss_pred CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec----cccccccccc-CCcEEEeC--
Q 011969 342 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS----YSCIEELVKV-DKNGLLFS-- 414 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~----~~~~~e~v~~-~~~G~l~~-- 414 (474)
+|+.+. .|+|+.+ ++.+.++..+. +++. -+.++||+.+|+|+|+.. .......+.+ -+.|+-+.
T Consensus 328 ~~~~v~-~w~PQ~~---iL~h~~v~~fv---tH~G--~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~ 398 (448)
T PLN02562 328 KQGKVV-SWAPQLE---VLKHQAVGCYL---THCG--WNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRISGF 398 (448)
T ss_pred cCEEEE-ecCCHHH---HhCCCccceEE---ecCc--chhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeCCC
Confidence 467666 4788765 57778876663 3331 238999999999999875 3334444433 36676664
Q ss_pred CHHHHHHHHHHHHhC
Q 011969 415 SSSELADQLLMLFKG 429 (474)
Q Consensus 415 ~~~~la~~i~~l~~~ 429 (474)
+.+++++++++++.+
T Consensus 399 ~~~~l~~~v~~~l~~ 413 (448)
T PLN02562 399 GQKEVEEGLRKVMED 413 (448)
T ss_pred CHHHHHHHHHHHhCC
Confidence 689999999999974
No 139
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=97.61 E-value=0.054 Score=55.81 Aligned_cols=101 Identities=10% Similarity=0.008 Sum_probs=65.4
Q ss_pred CCeEEEEEeecccCCCH--HHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHH
Q 011969 258 RPALVVSSTSWTPDEDF--GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYE 333 (474)
Q Consensus 258 ~~~~i~~~G~l~~~k~~--~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~ 333 (474)
++++++..|.-.+.|.. +...+.+..+.+ .+..++++|...+ .+..+
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~-----------------------------~~~~vvl~ggp~e~e~~~~~ 233 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQA-----------------------------RGYEVVLTSGPDKDDLACVN 233 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHH-----------------------------CCCeEEEEcCCChHHHHHHH
Confidence 45566776664455543 355555655543 2567888875432 22234
Q ss_pred HHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec
Q 011969 334 EKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 334 ~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~ 396 (474)
+.++.... +.+.+.|. .+-.++..+++.||++|. ..+| .+==|-|+|+|+|+--
T Consensus 234 ~i~~~~~~~~~~~l~g~-~sL~el~ali~~a~l~v~---nDSG-----p~HlAaA~g~P~v~lf 288 (352)
T PRK10422 234 EIAQGCQTPPVTALAGK-TTFPELGALIDHAQLFIG---VDSA-----PAHIAAAVNTPLICLF 288 (352)
T ss_pred HHHHhcCCCccccccCC-CCHHHHHHHHHhCCEEEe---cCCH-----HHHHHHHcCCCEEEEE
Confidence 44443332 34567777 889999999999999998 4566 3455778999999864
No 140
>PLN00414 glycosyltransferase family protein
Probab=97.57 E-value=0.17 Score=54.28 Aligned_cols=89 Identities=11% Similarity=0.149 Sum_probs=61.3
Q ss_pred CCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----ccccccc-ccCCcEEEeC-------CH
Q 011969 349 MWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELV-KVDKNGLLFS-------SS 416 (474)
Q Consensus 349 ~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~v-~~~~~G~l~~-------~~ 416 (474)
.|+|+.+ +++++.+..+. +++. -++++||+.+|+|+|+... ......+ +.-+.|+... +.
T Consensus 318 ~w~PQ~~---vL~h~~v~~fv---tH~G--~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~ 389 (446)
T PLN00414 318 GWVEQPL---ILSHPSVGCFV---NHCG--FGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSK 389 (446)
T ss_pred ccCCHHH---HhcCCccceEE---ecCc--hhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCH
Confidence 4688766 57777665552 3221 2489999999999999753 3334444 3457776662 58
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 417 SELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 417 ~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
+++++++++++.+ +.+..+++++++.+..
T Consensus 390 ~~i~~~v~~~m~~---~~e~g~~~r~~a~~~~ 418 (446)
T PLN00414 390 ESLRDTVKSVMDK---DSEIGNLVKRNHKKLK 418 (446)
T ss_pred HHHHHHHHHHhcC---ChhhHHHHHHHHHHHH
Confidence 8999999999974 3356677788777653
No 141
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=97.53 E-value=0.00015 Score=71.24 Aligned_cols=81 Identities=17% Similarity=0.133 Sum_probs=47.2
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhC-------CCcEEEEecCchhhhhh-----hccC-CCchH--------HHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLR-------RSAFIVDWHNFGYTLLS-----LSLG-RRSHF--------VSIYRW 158 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~h~~~~~~~~-----~~~~-~~~~~--------~~~~~~ 158 (474)
.+||+||+|+ +.+.++..+++... ++|+++++||..|.-.. ...+ +...+ .... .
T Consensus 132 ~~pDIIH~hD---W~tal~p~~lk~~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~~~~~~~~i-n 207 (245)
T PF08323_consen 132 WKPDIIHCHD---WHTALAPLYLKERYQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLDEYEFYGQI-N 207 (245)
T ss_dssp -S-SEEEEEC---GGGTTHHHHHHHCCSS------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STTTTEETTEE-E
T ss_pred CCCCEEEecC---chHHHHHHHhccccccccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhcccccccccccc-C
Confidence 5899999999 45554555555543 59999999997542110 0000 00000 0000 2
Q ss_pred HHHHHhhhcCEEEEeCHHHHHHHHHH
Q 011969 159 IEKYYGKMANGCLCVTQAMQHELAQN 184 (474)
Q Consensus 159 ~e~~~~~~ad~vi~vS~~~~~~l~~~ 184 (474)
+.+.....||.|.+||+..++++.+.
T Consensus 208 ~lk~gi~~AD~v~TVS~~Ya~Ei~~~ 233 (245)
T PF08323_consen 208 FLKAGIVYADKVTTVSPTYAREIQTP 233 (245)
T ss_dssp HHHHHHHHSSEEEESSHHHHHHTTSH
T ss_pred HHHHHHHhcCEeeeCCHHHHHHHhCc
Confidence 34466779999999999999887654
No 142
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.51 E-value=0.2 Score=53.77 Aligned_cols=92 Identities=13% Similarity=0.248 Sum_probs=60.9
Q ss_pred CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----cccccccccC-CcEEEeC--
Q 011969 342 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVKVD-KNGLLFS-- 414 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~v~~~-~~G~l~~-- 414 (474)
+|.... .|+|+.+ ++.+.++..+. +++ | -+.++||+++|+|+|+... ......+.+. +.|+.+.
T Consensus 324 ~~g~v~-~w~PQ~~---iL~h~~v~~fv---tH~-G-~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~ 394 (451)
T PLN02410 324 GRGYIV-KWAPQKE---VLSHPAVGGFW---SHC-G-WNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGD 394 (451)
T ss_pred CCeEEE-ccCCHHH---HhCCCccCeee---ecC-c-hhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCc
Confidence 355555 4888877 67777775552 322 1 2389999999999999753 3333444333 6787763
Q ss_pred -CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 011969 415 -SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 447 (474)
Q Consensus 415 -~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 447 (474)
+.+++++++++++.+ ++ .+++++++.++
T Consensus 395 ~~~~~v~~av~~lm~~----~~-~~~~r~~a~~l 423 (451)
T PLN02410 395 LDRGAVERAVKRLMVE----EE-GEEMRKRAISL 423 (451)
T ss_pred ccHHHHHHHHHHHHcC----Cc-HHHHHHHHHHH
Confidence 689999999999974 22 34555555543
No 143
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.23 E-value=0.16 Score=50.25 Aligned_cols=200 Identities=14% Similarity=0.099 Sum_probs=113.1
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (474)
..||+++..+. -+.+++..+++..+.+.++.+.+.. +. ++.-|.||+.-....+
T Consensus 69 ~~Pdl~I~aGr---rta~l~~~lkk~~~~~~vVqI~~Pr-------lp----------------~~~fDlvivp~HD~~~ 122 (329)
T COG3660 69 QRPDLIITAGR---RTAPLAFYLKKKFGGIKVVQIQDPR-------LP----------------YNHFDLVIVPYHDWRE 122 (329)
T ss_pred CCCceEEeccc---chhHHHHHHHHhcCCceEEEeeCCC-------CC----------------cccceEEeccchhhhh
Confidence 46999999884 4555566667666667788887772 11 1345677766665554
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCC
Q 011969 180 ELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRP 259 (474)
Q Consensus 180 ~l~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (474)
+... -+.++. --+|.+..-.+.-.....+.+.+++ +..++
T Consensus 123 ~~s~-~~~Nil-pi~Gs~h~Vt~~~lAa~~e~~~~~~--------------------------------------p~~rq 162 (329)
T COG3660 123 ELSD-QGPNIL-PINGSPHNVTSQRLAALREAFKHLL--------------------------------------PLPRQ 162 (329)
T ss_pred hhhc-cCCcee-eccCCCCcccHHHhhhhHHHHHhhC--------------------------------------CCCCc
Confidence 4222 133321 1223221111111112223333332 35567
Q ss_pred eEEEEEeecccCCCH--HHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHHHH
Q 011969 260 ALVVSSTSWTPDEDF--GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIR 337 (474)
Q Consensus 260 ~~i~~~G~l~~~k~~--~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~~ 337 (474)
++-+.+|.-.+.-.+ +.+.+..+.+.+. +......|++.-+--..+.++..++
T Consensus 163 ~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~-------------------------l~~~g~~~lisfSRRTp~~~~s~l~ 217 (329)
T COG3660 163 RVAVLVGGNNKAFVFQEDKAHQFASLLVKI-------------------------LENQGGSFLISFSRRTPDTVKSILK 217 (329)
T ss_pred eEEEEecCCCCCCccCHHHHHHHHHHHHHH-------------------------HHhCCceEEEEeecCCcHHHHHHHH
Confidence 788889887766555 3344444443331 1124567777776555566777666
Q ss_pred H-cCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec
Q 011969 338 R-LRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 338 ~-l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~ 396 (474)
. +.- .-+.+-+.-....-+..++..||..+. +..... -..||.+.|+||-+-.
T Consensus 218 ~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~---TaDSin---M~sEAasTgkPv~~~~ 272 (329)
T COG3660 218 NNLNSSPGIVWNNEDTGYNPYIDMLAAADYIIS---TADSIN---MCSEAASTGKPVFILE 272 (329)
T ss_pred hccccCceeEeCCCCCCCCchHHHHhhcceEEE---ecchhh---hhHHHhccCCCeEEEe
Confidence 5 332 334444332245578899999999998 333322 3689999999998753
No 144
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=97.21 E-value=0.039 Score=56.51 Aligned_cols=71 Identities=14% Similarity=0.072 Sum_probs=49.2
Q ss_pred CEEEEEEeCCCC--hHHHHHHHHHcCCC-cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEE
Q 011969 317 RLLFIITGKGPD--KESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVC 393 (474)
Q Consensus 317 ~~~l~ivG~g~~--~~~~~~~~~~l~l~-~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVi 393 (474)
+..++++|...+ .+..++..+..+-+ .+.+.|. .+-.++..+++.||++|. ..+| .+==|.|+|+|+|
T Consensus 213 ~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~-~sL~el~ali~~a~l~Vs---~DSG-----p~HlAaA~g~p~v 283 (344)
T TIGR02201 213 GYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGK-LTLPQLAALIDHARLFIG---VDSV-----PMHMAAALGTPLV 283 (344)
T ss_pred CCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCC-CCHHHHHHHHHhCCEEEe---cCCH-----HHHHHHHcCCCEE
Confidence 467888885432 22334444443333 3556777 889999999999999998 4555 4555889999999
Q ss_pred Eec
Q 011969 394 AVS 396 (474)
Q Consensus 394 a~~ 396 (474)
+--
T Consensus 284 ~Lf 286 (344)
T TIGR02201 284 ALF 286 (344)
T ss_pred EEE
Confidence 864
No 145
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=97.17 E-value=0.32 Score=48.75 Aligned_cols=201 Identities=20% Similarity=0.172 Sum_probs=110.3
Q ss_pred CCCCEEEEeCCCChh------HH---HHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEE
Q 011969 100 ASPDVFLVQNPPSVP------TL---VAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGC 170 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~------~~---~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~v 170 (474)
.+.|++++.....+. .+ ......+++.++|+++.-.+++. + .++ ..+++-+.+.+.+|.+
T Consensus 63 ~~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~giGP------~--~~~---~~r~~~~~~l~~~~~i 131 (298)
T TIGR03609 63 RRADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQGIGP------L--RRR---LSRWLVRRVLRGCRAI 131 (298)
T ss_pred HHCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEecccCC------c--CCH---HHHHHHHHHHccCCEE
Confidence 567888765432221 11 11223445678898887777642 1 111 2345566677899998
Q ss_pred EEeCHHHHHHHHHHhCCceEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccccc
Q 011969 171 LCVTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGI 250 (474)
Q Consensus 171 i~vS~~~~~~l~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (474)
.+=.+..++++++ .|.++.+.++..- .+.+.....
T Consensus 132 ~vRD~~S~~~l~~-~g~~i~~~~D~a~-~l~~~~~~~------------------------------------------- 166 (298)
T TIGR03609 132 SVRDAASYRLLKR-LGIPAELAADPVW-LLPPEPWPG------------------------------------------- 166 (298)
T ss_pred EEeCHHHHHHHHH-hCCCceEeCChhh-hCCCCcccc-------------------------------------------
Confidence 8877777776655 6777555554311 010100000
Q ss_pred ccccCCCCCeEEEEEeeccc--CCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeC--C
Q 011969 251 DVFLKPNRPALVVSSTSWTP--DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK--G 326 (474)
Q Consensus 251 ~~~~~~~~~~~i~~~G~l~~--~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~--g 326 (474)
....+++.+.+.+..+.. ....+.+.+++..+.++ .+.+++++.. +
T Consensus 167 --~~~~~~~~i~i~~r~~~~~~~~~~~~l~~~l~~l~~~----------------------------~g~~v~~i~~~~~ 216 (298)
T TIGR03609 167 --GEPLPEPVIVVSLRPWPLLDVSRLLRLLRALDRLQRD----------------------------TGAFVLFLPFQQP 216 (298)
T ss_pred --cccCCCCeEEEEECCCCcCCHHHHHHHHHHHHHHHHh----------------------------hCCeEEEEeCCcc
Confidence 001223434455444321 12344566666665442 2344544442 2
Q ss_pred CChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc
Q 011969 327 PDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 397 (474)
Q Consensus 327 ~~~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~ 397 (474)
.+.+..++..+.+.- ..| +.. .+.+++..++++||++|. ...+ .++=|+.+|+|+++..+
T Consensus 217 ~D~~~~~~l~~~~~~~~~i--~~~-~~~~e~~~~i~~~~~vI~---~RlH-----~~I~A~~~gvP~i~i~y 277 (298)
T TIGR03609 217 QDLPLARALRDQLLGPAEV--LSP-LDPEELLGLFASARLVIG---MRLH-----ALILAAAAGVPFVALSY 277 (298)
T ss_pred hhHHHHHHHHHhcCCCcEE--Eec-CCHHHHHHHHhhCCEEEE---echH-----HHHHHHHcCCCEEEeec
Confidence 344434444444432 233 233 678899999999999986 3434 67999999999998753
No 146
>PLN02210 UDP-glucosyl transferase
Probab=97.10 E-value=0.56 Score=50.40 Aligned_cols=91 Identities=14% Similarity=0.205 Sum_probs=60.1
Q ss_pred cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----ccccccccc-CCcEEEeC---
Q 011969 343 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVKV-DKNGLLFS--- 414 (474)
Q Consensus 343 ~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~v~~-~~~G~l~~--- 414 (474)
+..+. .|+|+.+ +++++++..+.+....+ +++||+.+|+|+|+... ......+.+ -+.|+...
T Consensus 325 ~g~v~-~w~PQ~~---iL~h~~vg~FitH~G~n-----S~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~ 395 (456)
T PLN02210 325 QGVVL-EWSPQEK---ILSHMAISCFVTHCGWN-----STIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDA 395 (456)
T ss_pred CeEEE-ecCCHHH---HhcCcCcCeEEeeCCcc-----cHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccc
Confidence 33344 5788865 78888866663222233 89999999999999753 333344444 57777662
Q ss_pred -----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 011969 415 -----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 447 (474)
Q Consensus 415 -----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 447 (474)
+.+++++++++++.+ +..+++|+++.++
T Consensus 396 ~~~~~~~~~l~~av~~~m~~-----~~g~~~r~~a~~l 428 (456)
T PLN02210 396 VDGELKVEEVERCIEAVTEG-----PAAADIRRRAAEL 428 (456)
T ss_pred cCCcCCHHHHHHHHHHHhcC-----chHHHHHHHHHHH
Confidence 578999999999974 2234566666543
No 147
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=97.10 E-value=1.6e-05 Score=72.87 Aligned_cols=89 Identities=16% Similarity=0.303 Sum_probs=59.2
Q ss_pred CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccc--------cccccccCCcEEEe
Q 011969 342 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC--------IEELVKVDKNGLLF 413 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~--------~~e~v~~~~~G~l~ 413 (474)
.+|.+.++ .+++..+++.||++|. ..| +.++.|++++|+|.|...... ....+...+.|...
T Consensus 55 ~~v~~~~~---~~~m~~~m~~aDlvIs----~aG---~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~ 124 (167)
T PF04101_consen 55 PNVKVFGF---VDNMAELMAAADLVIS----HAG---AGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIML 124 (167)
T ss_dssp CCCEEECS---SSSHHHHHHHHSEEEE----CS----CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCS
T ss_pred CcEEEEec---hhhHHHHHHHcCEEEe----CCC---ccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCcccc
Confidence 58999988 6789999999999987 223 358999999999999887555 22233344445444
Q ss_pred C----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 011969 414 S----SSSELADQLLMLFKGFPDDSDVLKKLRNGT 444 (474)
Q Consensus 414 ~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~ 444 (474)
. +++.|.++|..++++ +...+++.+..
T Consensus 125 ~~~~~~~~~L~~~i~~l~~~----~~~~~~~~~~~ 155 (167)
T PF04101_consen 125 DESELNPEELAEAIEELLSD----PEKLKEMAKAA 155 (167)
T ss_dssp ECCC-SCCCHHHHHHCHCCC----HH-SHHHCCCH
T ss_pred CcccCCHHHHHHHHHHHHcC----cHHHHHHHHHH
Confidence 3 377899999999885 55545554443
No 148
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=97.10 E-value=0.18 Score=51.80 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=51.5
Q ss_pred CEEEEEEeCCCChHHHHHHHHHcCC---Cc-EEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcE
Q 011969 317 RLLFIITGKGPDKESYEEKIRRLRL---KR-VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPV 392 (474)
Q Consensus 317 ~~~l~ivG~g~~~~~~~~~~~~l~l---~~-V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PV 392 (474)
++.++++|...+++..++..+.++- .+ +.+.|. .+-.++..+++.||++|. ..+| .+==|-|.|+|+
T Consensus 213 ~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~-~sL~el~ali~~a~l~I~---nDTG-----p~HlAaA~g~P~ 283 (348)
T PRK10916 213 GYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGE-TQLEQAVILIAACKAIVT---NDSG-----LMHVAAALNRPL 283 (348)
T ss_pred CCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCC-CCHHHHHHHHHhCCEEEe---cCCh-----HHHHHHHhCCCE
Confidence 5778888976666655555555432 12 556676 788999999999999998 4555 344588999999
Q ss_pred EEec
Q 011969 393 CAVS 396 (474)
Q Consensus 393 ia~~ 396 (474)
|+--
T Consensus 284 valf 287 (348)
T PRK10916 284 VALY 287 (348)
T ss_pred EEEE
Confidence 9864
No 149
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.07 E-value=0.23 Score=50.28 Aligned_cols=287 Identities=16% Similarity=0.170 Sum_probs=153.3
Q ss_pred CCCCCchHHH---HHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchh-HHHHHHHHHHHHHH
Q 011969 14 DLGRSPRMQY---QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVL-KPVLLLLKPLIQFF 89 (474)
Q Consensus 14 ~~g~~~r~~~---~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 89 (474)
|++.++.... ....|.++ ||+|.+.|.+... ..+.++..|+.+..+..+ +...+. +.+....+.
T Consensus 6 DI~n~~hvhfFk~lI~elekk-G~ev~iT~rd~~~-v~~LLd~ygf~~~~Igk~-----g~~tl~~Kl~~~~eR~----- 73 (346)
T COG1817 6 DIGNPPHVHFFKNLIWELEKK-GHEVLITCRDFGV-VTELLDLYGFPYKSIGKH-----GGVTLKEKLLESAERV----- 73 (346)
T ss_pred EcCCcchhhHHHHHHHHHHhC-CeEEEEEEeecCc-HHHHHHHhCCCeEeeccc-----CCccHHHHHHHHHHHH-----
Confidence 3455555444 34667776 9999988866443 336777888888888722 111121 111111111
Q ss_pred HHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCE
Q 011969 90 MLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANG 169 (474)
Q Consensus 90 ~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ 169 (474)
..+..+.. ..+||+.+.-+.+.++. .++..++|.|+-..+- ... .-++.....||.
T Consensus 74 ~~L~ki~~-~~kpdv~i~~~s~~l~r------vafgLg~psIi~~D~e-hA~----------------~qnkl~~Pla~~ 129 (346)
T COG1817 74 YKLSKIIA-EFKPDVAIGKHSPELPR------VAFGLGIPSIIFVDNE-HAE----------------AQNKLTLPLADV 129 (346)
T ss_pred HHHHHHHh-hcCCceEeecCCcchhh------HHhhcCCceEEecCCh-hHH----------------HHhhcchhhhhh
Confidence 01222222 27899987644333322 2445677877644333 100 124556678898
Q ss_pred EEEeCHHHHHHHHHHhCCc--eEEEeCCCC-----CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchh
Q 011969 170 CLCVTQAMQHELAQNWGIK--ATVLYDQPP-----EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADET 242 (474)
Q Consensus 170 vi~vS~~~~~~l~~~~~~~--~~vi~n~~~-----~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (474)
+++.+-.....+.. +|.+ -.+-+|+.. ..|.|. .++.++||
T Consensus 130 ii~P~~~~~~~~~~-~G~~p~~i~~~~giae~~~v~~f~pd-----~evlkeLg-------------------------- 177 (346)
T COG1817 130 IITPEAIDEEELLD-FGADPNKISGYNGIAELANVYGFVPD-----PEVLKELG-------------------------- 177 (346)
T ss_pred eecccccchHHHHH-hCCCccceecccceeEEeecccCCCC-----HHHHHHcC--------------------------
Confidence 88888777766666 4554 233344422 225444 46677777
Q ss_pred hhhcccccccccCCCCCeEEEE-----EeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCC
Q 011969 243 IFTSLAGIDVFLKPNRPALVVS-----STSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPR 317 (474)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~i~~-----~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (474)
+.++.+++++= +.-....++.+.+.++++.+.+ ++
T Consensus 178 -----------l~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k----------------------------~g- 217 (346)
T COG1817 178 -----------LEEGETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKK----------------------------YG- 217 (346)
T ss_pred -----------CCCCCceEEEeeccccceeeccccchhhHHHHHHHHHh----------------------------Cc-
Confidence 33444434331 1112345677778888888766 23
Q ss_pred EEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc
Q 011969 318 LLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 397 (474)
Q Consensus 318 ~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~ 397 (474)
.+++-. ..+.++..+... ++... -+.-|--+++--|++.+- .| |.---||...|+|.|++.-
T Consensus 218 --iV~ipr---~~~~~eife~~~--n~i~p---k~~vD~l~Llyya~lvig-----~g---gTMarEaAlLGtpaIs~~p 279 (346)
T COG1817 218 --IVLIPR---EKEQAEIFEGYR--NIIIP---KKAVDTLSLLYYATLVIG-----AG---GTMAREAALLGTPAISCYP 279 (346)
T ss_pred --EEEecC---chhHHHHHhhhc--cccCC---cccccHHHHHhhhheeec-----CC---chHHHHHHHhCCceEEecC
Confidence 344432 222333444332 22222 123343446777787774 22 2345899999999999873
Q ss_pred c---ccccccccCCcEEEeC--CHHHHHHHHHHHHh
Q 011969 398 S---CIEELVKVDKNGLLFS--SSSELADQLLMLFK 428 (474)
Q Consensus 398 ~---~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~ 428 (474)
| ...+... +.|.++. |+.+..+...+.+.
T Consensus 280 Gkll~vdk~li--e~G~~~~s~~~~~~~~~a~~~l~ 313 (346)
T COG1817 280 GKLLAVDKYLI--EKGLLYHSTDEIAIVEYAVRNLK 313 (346)
T ss_pred CccccccHHHH--hcCceeecCCHHHHHHHHHHHhh
Confidence 2 2333332 3567764 56555555555554
No 150
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.99 E-value=0.13 Score=52.04 Aligned_cols=130 Identities=16% Similarity=0.067 Sum_probs=77.4
Q ss_pred CCCeEEEEEeecccCCCH--HHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh-HHHH
Q 011969 257 NRPALVVSSTSWTPDEDF--GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-ESYE 333 (474)
Q Consensus 257 ~~~~~i~~~G~l~~~k~~--~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~-~~~~ 333 (474)
+++.+++..|.=.+.|.. +...+.+..+.+ .+..++++|+++.+ +..+
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~-----------------------------~~~~~vl~~g~~~e~~~~~ 228 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLA-----------------------------RGLQIVLPWGNDAEKQRAE 228 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHH-----------------------------CCCeEEEeCCCHHHHHHHH
Confidence 455566666654455554 455566666544 24677777555543 4444
Q ss_pred HHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccC--CcEE
Q 011969 334 EKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVD--KNGL 411 (474)
Q Consensus 334 ~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~--~~G~ 411 (474)
+..+..+ +..+.|. .+-.++..+++.||++|. ..+| .+==|-|+|+|+|+--.+..+...... ....
T Consensus 229 ~i~~~~~--~~~l~g~-~sL~el~ali~~a~l~I~---~DSg-----p~HlAaa~g~P~i~lfg~t~p~~~~P~~~~~~~ 297 (319)
T TIGR02193 229 RIAEALP--GAVVLPK-MSLAEVAALLAGADAVVG---VDTG-----LTHLAAALDKPTVTLYGATDPGRTGGYGKPNVA 297 (319)
T ss_pred HHHhhCC--CCeecCC-CCHHHHHHHHHcCCEEEe---CCCh-----HHHHHHHcCCCEEEEECCCCHhhcccCCCCceE
Confidence 4444332 4466787 889999999999999998 4555 344467889999986432221111111 1112
Q ss_pred EeC------CHHHHHHHHHHH
Q 011969 412 LFS------SSSELADQLLML 426 (474)
Q Consensus 412 l~~------~~~~la~~i~~l 426 (474)
+.. ++++..+++.++
T Consensus 298 ~~~~~~~~I~~~~V~~ai~~~ 318 (319)
T TIGR02193 298 LLGESGANPTPDEVLAALEEL 318 (319)
T ss_pred EccCccCCCCHHHHHHHHHhh
Confidence 221 477888877765
No 151
>PLN03007 UDP-glucosyltransferase family protein
Probab=96.98 E-value=0.76 Score=49.72 Aligned_cols=92 Identities=18% Similarity=0.248 Sum_probs=57.6
Q ss_pred CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----cccccccc-cCCcEEEe---
Q 011969 342 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVK-VDKNGLLF--- 413 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~v~-~~~~G~l~--- 413 (474)
+++...+ |+|+. .+|.++++..+. +++. -+.++||+.+|+|+|+... ......+. .-+.|+-+
T Consensus 345 ~g~~v~~-w~PQ~---~iL~h~~v~~fv---tH~G--~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~ 415 (482)
T PLN03007 345 KGLIIRG-WAPQV---LILDHQATGGFV---THCG--WNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAK 415 (482)
T ss_pred CCEEEec-CCCHH---HHhccCccceee---ecCc--chHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccc
Confidence 4677764 68875 578888886663 3331 2489999999999999863 22222221 11233321
Q ss_pred -------C--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 011969 414 -------S--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 447 (474)
Q Consensus 414 -------~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 447 (474)
+ +.++++++++.++.+ + +.+++|+++.++
T Consensus 416 ~~~~~~~~~~~~~~l~~av~~~m~~----~-~~~~~r~~a~~~ 453 (482)
T PLN03007 416 KLVKVKGDFISREKVEKAVREVIVG----E-EAEERRLRAKKL 453 (482)
T ss_pred cccccccCcccHHHHHHHHHHHhcC----c-HHHHHHHHHHHH
Confidence 1 588999999999975 2 234555555543
No 152
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=96.96 E-value=0.083 Score=54.73 Aligned_cols=184 Identities=12% Similarity=0.014 Sum_probs=102.6
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhC-CCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLR-RSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (474)
.+||++++-+.|.+..- +++.+++.. ++|+++.+----| -.+.+.. +.+.+.+|.++|.=....
T Consensus 75 ~~pd~~i~iD~p~Fnl~-lak~~k~~~~~i~viyyi~PqvW------AWr~~R~--------~~i~k~~d~vl~ifPFE~ 139 (347)
T PRK14089 75 KQADKVLLMDSSSFNIP-LAKKIKKAYPKKEIIYYILPQVW------AWKKGRA--------KILEKYCDFLASILPFEV 139 (347)
T ss_pred cCCCEEEEeCCCCCCHH-HHHHHHhcCCCCCEEEEECccce------eeCcchH--------HHHHHHHhhhhccCCCCH
Confidence 78999998887777655 456555543 7998875543211 0111111 233456777777655444
Q ss_pred HHHHHHhCCceEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCC
Q 011969 179 HELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNR 258 (474)
Q Consensus 179 ~~l~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (474)
+.+ |.++..+=|...+...+. .. .+ .+.
T Consensus 140 ~~y----g~~~~~VGhPl~d~~~~~--------~~---------------------------------------~~-~~~ 167 (347)
T PRK14089 140 QFY----QSKATYVGHPLLDEIKEF--------KK---------------------------------------DL-DKE 167 (347)
T ss_pred HHh----CCCCEEECCcHHHhhhhh--------hh---------------------------------------hc-CCC
Confidence 333 666554433211111000 00 01 122
Q ss_pred CeEEEEEeecccC--CCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHHH
Q 011969 259 PALVVSSTSWTPD--EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKI 336 (474)
Q Consensus 259 ~~~i~~~G~l~~~--k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~ 336 (474)
+.+.++-||-... +-+..+++++..+.++ ...+++.|... .+.+++..
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~-----------------------------~~~~~i~~a~~-~~~i~~~~ 217 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGK-----------------------------EKILVVPSFFK-GKDLKEIY 217 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhc-----------------------------CcEEEEeCCCc-HHHHHHHH
Confidence 4466777764322 4455566777666541 26778877543 34455544
Q ss_pred HHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec
Q 011969 337 RRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 337 ~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~ 396 (474)
.+. ..+.+. ++...+++.||+.++ .+ |.+.+|++.+|+|.|..-
T Consensus 218 ~~~--~~~~~~------~~~~~~m~~aDlal~----~S----GT~TLE~al~g~P~Vv~Y 261 (347)
T PRK14089 218 GDI--SEFEIS------YDTHKALLEAEFAFI----CS----GTATLEAALIGTPFVLAY 261 (347)
T ss_pred hcC--CCcEEe------ccHHHHHHhhhHHHh----cC----cHHHHHHHHhCCCEEEEE
Confidence 432 234443 245689999999998 33 347779999999999864
No 153
>PLN02534 UDP-glycosyltransferase
Probab=96.96 E-value=0.81 Score=49.70 Aligned_cols=117 Identities=17% Similarity=0.252 Sum_probs=68.2
Q ss_pred CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc----cccc-ccccCCcEEEe---
Q 011969 342 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEE-LVKVDKNGLLF--- 413 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~----~~~e-~v~~~~~G~l~--- 413 (474)
+++.+. .|+|+. .++.+.++..+. +++ =.+.++||+++|+|+|+.... .... +++.-+.|+-+
T Consensus 344 ~g~~v~-~w~pq~---~iL~h~~v~~fv---tH~--G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~ 414 (491)
T PLN02534 344 RGLLIK-GWAPQV---LILSHPAIGGFL---THC--GWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVE 414 (491)
T ss_pred CCeecc-CCCCHH---HHhcCCccceEE---ecC--ccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEeccc
Confidence 355554 468874 478888886662 332 134899999999999997631 1111 12222333322
Q ss_pred --------------CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccc--cchH---HHHHHHHHHHHHHHhhc
Q 011969 414 --------------SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLS--ARWA---TEWEEHAKPLITEVISQ 471 (474)
Q Consensus 414 --------------~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~w~---~~~~~~~~~~~~~~~~~ 471 (474)
-+.+++++++++++.. +.++.++||+++.++... .++. .++ +.++.++.++..|
T Consensus 415 ~~~~~~~~~~~~~~v~~eev~~~v~~~m~~---~~eeg~~~R~rA~elk~~a~~Av~~GGSS~-~nl~~fv~~i~~~ 487 (491)
T PLN02534 415 VPVRWGDEERVGVLVKKDEVEKAVKTLMDD---GGEEGERRRRRAQELGVMARKAMELGGSSH-INLSILIQDVLKQ 487 (491)
T ss_pred ccccccccccccCccCHHHHHHHHHHHhcc---ccccHHHHHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHH
Confidence 2577999999999862 123456677777664311 1121 233 3356677766654
No 154
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.91 E-value=0.084 Score=52.37 Aligned_cols=73 Identities=26% Similarity=0.231 Sum_probs=53.6
Q ss_pred CEEEEEEeCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEe
Q 011969 317 RLLFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 395 (474)
Q Consensus 317 ~~~l~ivG~g~~~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~ 395 (474)
+++++++|...+++..++..+..+. +.+.+.|. .+-.++..+++.||++|. ..++ .+-=|.|+|+|+++-
T Consensus 153 ~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~-~~l~e~~~li~~~~l~I~---~Dsg-----~~HlA~a~~~p~i~l 223 (279)
T cd03789 153 GARVVLTGGPAERELAEEIAAALGGPRVVNLAGK-TSLRELAALLARADLVVT---NDSG-----PMHLAAALGTPTVAL 223 (279)
T ss_pred CCEEEEEechhhHHHHHHHHHhcCCCccccCcCC-CCHHHHHHHHHhCCEEEe---eCCH-----HHHHHHHcCCCEEEE
Confidence 6788899977766666666555532 34556776 788999999999999998 3444 445567999999997
Q ss_pred ccc
Q 011969 396 SYS 398 (474)
Q Consensus 396 ~~~ 398 (474)
-.+
T Consensus 224 ~g~ 226 (279)
T cd03789 224 FGP 226 (279)
T ss_pred ECC
Confidence 543
No 155
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.66 E-value=0.27 Score=50.50 Aligned_cols=100 Identities=23% Similarity=0.253 Sum_probs=71.8
Q ss_pred CCeEEEEEe-ecccCCCHH--HHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHH
Q 011969 258 RPALVVSST-SWTPDEDFG--ILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEE 334 (474)
Q Consensus 258 ~~~~i~~~G-~l~~~k~~~--~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~ 334 (474)
+|.+++..| +-...|... ...+.+..+.++ ...++++|+..+.+..++
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~-----------------------------~~~Vvl~g~~~e~e~~~~ 225 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAK-----------------------------GYQVVLFGGPDEEERAEE 225 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHC-----------------------------CCEEEEecChHHHHHHHH
Confidence 566777777 665666544 566666666552 378999998855566666
Q ss_pred HHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec
Q 011969 335 KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 335 ~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~ 396 (474)
..+.+.. .+.+.|. .+-.++..++..||++|. ..+| .+==|-|.|+|+|+.-
T Consensus 226 i~~~~~~-~~~l~~k-~sL~e~~~li~~a~l~I~---~DSg-----~~HlAaA~~~P~I~iy 277 (334)
T COG0859 226 IAKGLPN-AVILAGK-TSLEELAALIAGADLVIG---NDSG-----PMHLAAALGTPTIALY 277 (334)
T ss_pred HHHhcCC-ccccCCC-CCHHHHHHHHhcCCEEEc---cCCh-----HHHHHHHcCCCEEEEE
Confidence 6666542 2227787 889999999999999998 4566 4455889999999975
No 156
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=96.51 E-value=0.054 Score=50.45 Aligned_cols=155 Identities=12% Similarity=0.036 Sum_probs=85.6
Q ss_pred CCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEEeCCC
Q 011969 32 MSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPP 111 (474)
Q Consensus 32 ~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~ 111 (474)
.||+|..+|....... . +||+..++................+-.....-......+..+..+...||+|+.|...
T Consensus 2 ~gh~v~fl~~~~~~~~---~--~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~Gf~PDvI~~H~GW 76 (171)
T PF12000_consen 2 RGHEVVFLTERKRPPI---P--PGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQAVARAARQLRAQGFVPDVIIAHPGW 76 (171)
T ss_pred CCCEEEEEecCCCCCC---C--CCcEEEEeCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEcCCc
Confidence 4999999995543322 1 6999998874222222222222222222222233344455566666789999999854
Q ss_pred ChhHHHHHHHHHhh-CCCcEEEEecCchhhhhhhc--cC---CCc---hH-HHHHHHHHHHHhhhcCEEEEeCHHHHHHH
Q 011969 112 SVPTLVAVKWASSL-RRSAFIVDWHNFGYTLLSLS--LG---RRS---HF-VSIYRWIEKYYGKMANGCLCVTQAMQHEL 181 (474)
Q Consensus 112 ~~~~~~~~~~~~~~-~~~~~i~~~h~~~~~~~~~~--~~---~~~---~~-~~~~~~~e~~~~~~ad~vi~vS~~~~~~l 181 (474)
+-. ..++-. ...|+|...- +.|...... +. +.. .. .+............||..++.|...+..+
T Consensus 77 Ge~-----Lflkdv~P~a~li~Y~E-~~y~~~g~d~~FDpe~p~~~~~~~~~r~rN~~~l~~l~~~D~~isPT~wQ~~~f 150 (171)
T PF12000_consen 77 GET-----LFLKDVFPDAPLIGYFE-FYYRASGADVGFDPEFPPSLDDRARLRMRNAHNLLALEQADAGISPTRWQRSQF 150 (171)
T ss_pred chh-----hhHHHhCCCCcEEEEEE-EEecCCCCcCCCCCCCCCCHHHHHHHHHHhHHHHHHHHhCCcCcCCCHHHHHhC
Confidence 322 223333 4677665221 111111101 11 111 11 12223334444568999999999999888
Q ss_pred HHHhCCceEEEeCCCC
Q 011969 182 AQNWGIKATVLYDQPP 197 (474)
Q Consensus 182 ~~~~~~~~~vi~n~~~ 197 (474)
-..+..++.|+++|.+
T Consensus 151 P~~~r~kI~VihdGiD 166 (171)
T PF12000_consen 151 PAEFRSKISVIHDGID 166 (171)
T ss_pred CHHHHcCcEEeecccc
Confidence 7777788999999955
No 157
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.46 E-value=0.19 Score=51.26 Aligned_cols=76 Identities=18% Similarity=0.153 Sum_probs=54.0
Q ss_pred CEEEEEEeCCCChHHHHHHHHHcC--CCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEE
Q 011969 317 RLLFIITGKGPDKESYEEKIRRLR--LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 394 (474)
Q Consensus 317 ~~~l~ivG~g~~~~~~~~~~~~l~--l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia 394 (474)
...+.|+.+--...+.++..+++- ...+.+... -+..-+..+|..||.+++ +.... +=+.||++.|+||..
T Consensus 182 ~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~-~~~nPy~~~La~ad~i~V---T~DSv---SMvsEA~~tG~pV~v 254 (311)
T PF06258_consen 182 GGSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDG-TGENPYLGFLAAADAIVV---TEDSV---SMVSEAAATGKPVYV 254 (311)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecC-CCCCcHHHHHHhCCEEEE---cCccH---HHHHHHHHcCCCEEE
Confidence 378899887655566666655543 256745454 456669999999999999 33331 258999999999998
Q ss_pred ecccc
Q 011969 395 VSYSC 399 (474)
Q Consensus 395 ~~~~~ 399 (474)
-...+
T Consensus 255 ~~l~~ 259 (311)
T PF06258_consen 255 LPLPG 259 (311)
T ss_pred ecCCC
Confidence 76543
No 158
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=96.43 E-value=0.019 Score=61.73 Aligned_cols=79 Identities=18% Similarity=0.297 Sum_probs=52.5
Q ss_pred CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----cccccccccCCcEEEeC---
Q 011969 342 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVKVDKNGLLFS--- 414 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~v~~~~~G~l~~--- 414 (474)
+|+... .|+|+.+ ++++..+-++ -++|. -+.+.||+.+|+|+|+... ......+++.+.|...+
T Consensus 323 ~n~~~~-~W~PQ~~---lL~hp~v~~f---itHgG--~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~ 393 (500)
T PF00201_consen 323 KNVLIV-KWLPQND---LLAHPRVKLF---ITHGG--LNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKND 393 (500)
T ss_dssp TTEEEE-SS--HHH---HHTSTTEEEE---EES----HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC
T ss_pred ceEEEe-ccccchh---hhhcccceee---eeccc--cchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecC
Confidence 477665 5899854 4777766665 24442 3589999999999999863 34445566667787765
Q ss_pred -CHHHHHHHHHHHHhC
Q 011969 415 -SSSELADQLLMLFKG 429 (474)
Q Consensus 415 -~~~~la~~i~~l~~~ 429 (474)
+.+++.++|.+++++
T Consensus 394 ~~~~~l~~ai~~vl~~ 409 (500)
T PF00201_consen 394 LTEEELRAAIREVLEN 409 (500)
T ss_dssp -SHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHhh
Confidence 589999999999995
No 159
>PLN02670 transferase, transferring glycosyl groups
Probab=96.22 E-value=0.083 Score=56.97 Aligned_cols=111 Identities=17% Similarity=0.166 Sum_probs=70.8
Q ss_pred EEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----cccccccccCCcEEEeC-----
Q 011969 344 VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVKVDKNGLLFS----- 414 (474)
Q Consensus 344 V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~v~~~~~G~l~~----- 414 (474)
+.+. .|+|+.+ ++++.++..+. +++. -+.++||+++|+|+|+... ......+...+.|+.+.
T Consensus 341 ~vv~-~W~PQ~~---IL~H~~v~~Fv---tHcG--wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~ 411 (472)
T PLN02670 341 MIHV-GWVPQVK---ILSHESVGGFL---THCG--WNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERD 411 (472)
T ss_pred eEEe-CcCCHHH---HhcCcccceee---ecCC--cchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccC
Confidence 4444 4788766 67788886663 3331 2489999999999999752 33344455567887762
Q ss_pred ---CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Q 011969 415 ---SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEV 468 (474)
Q Consensus 415 ---~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 468 (474)
+.+++++++++++.+ +..+++++++.+.....+=...-++.++.+++.+
T Consensus 412 ~~~~~e~i~~av~~vm~~-----~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l 463 (472)
T PLN02670 412 GSFTSDSVAESVRLAMVD-----DAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYL 463 (472)
T ss_pred CcCcHHHHHHHHHHHhcC-----cchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHH
Confidence 478999999999974 2345677777765544433333444444444433
No 160
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=95.93 E-value=3.1 Score=44.78 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=52.3
Q ss_pred CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----cccccccccC-CcEEEe---
Q 011969 342 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVKVD-KNGLLF--- 413 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~v~~~-~~G~l~--- 413 (474)
++..+. .|+|+.+ ++.+.++..+. +++. -+.++||+.+|+|+|+... ......+.+. +.|+-.
T Consensus 327 ~~g~v~-~W~PQ~~---iL~h~~vg~fv---tH~G--~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~ 397 (455)
T PLN02152 327 EVGMIV-SWCSQIE---VLRHRAVGCFV---THCG--WSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVREN 397 (455)
T ss_pred CCeEEE-eeCCHHH---HhCCcccceEE---eeCC--cccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecC
Confidence 355454 5788765 68888887773 3331 2389999999999999753 2333333331 344443
Q ss_pred ----CCHHHHHHHHHHHHhC
Q 011969 414 ----SSSSELADQLLMLFKG 429 (474)
Q Consensus 414 ----~~~~~la~~i~~l~~~ 429 (474)
-+.+++++++++++++
T Consensus 398 ~~~~~~~e~l~~av~~vm~~ 417 (455)
T PLN02152 398 SEGLVERGEIRRCLEAVMEE 417 (455)
T ss_pred cCCcCcHHHHHHHHHHHHhh
Confidence 1578999999999963
No 161
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=95.92 E-value=0.11 Score=58.39 Aligned_cols=135 Identities=16% Similarity=0.081 Sum_probs=98.6
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh-----
Q 011969 255 KPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK----- 329 (474)
Q Consensus 255 ~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~----- 329 (474)
.++.. +++++-|++..|...+.+.-+..+.+.+. + -..|.+.+++.|+-...
T Consensus 484 ~p~~l-fd~~~kRiheYKRq~Lnl~~i~~ly~~i~----~------------------d~~prv~~iFaGKAhP~y~~aK 540 (750)
T COG0058 484 DPNAL-FDGQARRIHEYKRQLLNLLDIERLYRILK----E------------------DWVPRVQIIFAGKAHPADYAAK 540 (750)
T ss_pred CCCcc-eeeeehhhhhhhhhHHhHhhHHHHHHHHh----c------------------CCCCceEEEEeccCCCcchHHH
Confidence 34444 88999999999998888777666655311 1 12477777888864222
Q ss_pred ---HHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCC-CCCCchHHHHHHhcCCcEEEeccccccccc
Q 011969 330 ---ESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS-GLDLPMKVVDMFGCGLPVCAVSYSCIEELV 404 (474)
Q Consensus 330 ---~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~-~e~~p~kv~Eama~G~PVia~~~~~~~e~v 404 (474)
..+.+.++..+. .+|.|+.- -+.+-...++..||+-..- |.. -|..|+.=+=++..|.+-|+|--|...|+.
T Consensus 541 ~iIk~I~~~a~~in~~lkVvFl~n-YdvslA~~iipa~Dvweqi--s~a~~EASGTsnMK~alNGaltigtlDGanvEi~ 617 (750)
T COG0058 541 EIIKLINDVADVINNKLKVVFLPN-YDVSLAELLIPAADVWEQI--PTAGKEASGTSNMKAALNGALTLGTLDGANVEIY 617 (750)
T ss_pred HHHHHHHHHHHhhcccceEEEeCC-CChhHHHhhcccccccccC--CCCCccccCcCcchHHhcCCceeeccccHHHHHH
Confidence 223334444443 47899877 6777888899999999982 333 377888888899999999999988888888
Q ss_pred c--cCCcEEEeCC
Q 011969 405 K--VDKNGLLFSS 415 (474)
Q Consensus 405 ~--~~~~G~l~~~ 415 (474)
+ .+.||+++.+
T Consensus 618 e~vg~~N~~~fG~ 630 (750)
T COG0058 618 EHVGGENGWIFGE 630 (750)
T ss_pred HhcCCCceEEeCC
Confidence 6 8899999974
No 162
>PLN02764 glycosyltransferase family protein
Probab=95.64 E-value=0.17 Score=54.30 Aligned_cols=89 Identities=15% Similarity=0.122 Sum_probs=59.8
Q ss_pred CCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----ccccccc-ccCCcEEEe-------CCH
Q 011969 349 MWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELV-KVDKNGLLF-------SSS 416 (474)
Q Consensus 349 ~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~v-~~~~~G~l~-------~~~ 416 (474)
.|+|+.+ ++++..+..+. +++. -++++||+.+|+|+|+... ......+ +.-+.|+-. -+.
T Consensus 323 ~W~PQ~~---vL~h~~v~~Fv---tH~G--~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~ 394 (453)
T PLN02764 323 GWVQQPL---ILSHPSVGCFV---SHCG--FGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSK 394 (453)
T ss_pred CCCCHHH---HhcCcccCeEE---ecCC--chHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCH
Confidence 5788876 56776665552 3321 2489999999999999863 2333444 334667653 157
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 417 SELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 417 ~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
+++.+++++++++ ..+..+++++++.++.
T Consensus 395 e~i~~av~~vm~~---~~~~g~~~r~~a~~~~ 423 (453)
T PLN02764 395 ESLRDAINSVMKR---DSEIGNLVKKNHTKWR 423 (453)
T ss_pred HHHHHHHHHHhcC---CchhHHHHHHHHHHHH
Confidence 8999999999974 2255677777777653
No 163
>PLN02555 limonoid glucosyltransferase
Probab=95.61 E-value=0.24 Score=53.59 Aligned_cols=93 Identities=16% Similarity=0.240 Sum_probs=60.5
Q ss_pred CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----cccccccccC-CcEEEe---
Q 011969 342 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVKVD-KNGLLF--- 413 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~v~~~-~~G~l~--- 413 (474)
+++.+. .|+|+.+ ++.+..+..+. +++. -+.++||+.+|+|+|+... ......+.+. +.|+..
T Consensus 337 ~~g~v~-~W~PQ~~---iL~H~~v~~Fv---tH~G--~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~ 407 (480)
T PLN02555 337 DKGKIV-QWCPQEK---VLAHPSVACFV---THCG--WNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRG 407 (480)
T ss_pred CceEEE-ecCCHHH---HhCCCccCeEE---ecCC--cchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCC
Confidence 466655 4788765 56555554442 2321 2389999999999999863 2333333333 677666
Q ss_pred ---C---CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 414 ---S---SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 414 ---~---~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
. +.++++.++++++.+ ++.+++|+++.++.
T Consensus 408 ~~~~~~v~~~~v~~~v~~vm~~-----~~g~~~r~ra~~l~ 443 (480)
T PLN02555 408 EAENKLITREEVAECLLEATVG-----EKAAELKQNALKWK 443 (480)
T ss_pred ccccCcCcHHHHHHHHHHHhcC-----chHHHHHHHHHHHH
Confidence 1 478999999999874 23567777777654
No 164
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=95.49 E-value=0.16 Score=53.41 Aligned_cols=104 Identities=23% Similarity=0.311 Sum_probs=72.2
Q ss_pred HHHHHHHcCC-----C--cEEEecCCCC------cccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc
Q 011969 332 YEEKIRRLRL-----K--RVAFRTMWLS------AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 398 (474)
Q Consensus 332 ~~~~~~~l~l-----~--~V~f~g~~v~------~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~ 398 (474)
+.+.+++.++ + +|.|.+.+++ .-|+.++.+.|.++|+ ||+.|.+|..-.|---+|+|-|+|+.+
T Consensus 457 iL~~iRr~~LFN~~~DRVKvifHPEFLss~sPllglDYeeFVRGCHLGVF---PSYYEPWGYTPAECTVMGiPSvtTNlS 533 (692)
T KOG3742|consen 457 ILSSIRRIGLFNSPSDRVKVIFHPEFLSSTSPLLGLDYEEFVRGCHLGVF---PSYYEPWGYTPAECTVMGIPSVTTNLS 533 (692)
T ss_pred HHHHhHhhhcccCcccceEEEecHHHhccCCCCcCCCHHHHhcccccccc---ccccCCCCCCchheEEecccccccccc
Confidence 5566777666 2 4667665554 3488999999999999 799999999999999999999999864
Q ss_pred c----cccccccCC-cEEEe-C--------CHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 011969 399 C----IEELVKVDK-NGLLF-S--------SSSELADQLLMLFKGFPDDSDVLKKLRNG 443 (474)
Q Consensus 399 ~----~~e~v~~~~-~G~l~-~--------~~~~la~~i~~l~~~~~~~~~~~~~~~~~ 443 (474)
| ++|.|.+.. .|+-+ + +.+.|++.+....+ ...++++-++
T Consensus 534 GFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~~m~~F~~-----qsRRQRIiqR 587 (692)
T KOG3742|consen 534 GFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLASFMYEFCK-----QSRRQRIIQR 587 (692)
T ss_pred chhhhHHHHhcCchhceEEEEecccCChhhHHHHHHHHHHHHHH-----HHHHHHHHHh
Confidence 4 456665543 34433 2 25566666666555 3445554443
No 165
>PLN00164 glucosyltransferase; Provisional
Probab=95.45 E-value=0.32 Score=52.67 Aligned_cols=110 Identities=16% Similarity=0.207 Sum_probs=67.1
Q ss_pred CCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----ccccccc-ccCCcEEEeC---------
Q 011969 349 MWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELV-KVDKNGLLFS--------- 414 (474)
Q Consensus 349 ~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~v-~~~~~G~l~~--------- 414 (474)
.|+|+.+ ++.+.++..+. +++. -+.++||+++|+|+|+... ......+ +.-+.|+...
T Consensus 345 ~w~PQ~~---iL~h~~vg~fv---tH~G--wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~ 416 (480)
T PLN00164 345 TWAPQKE---ILAHAAVGGFV---THCG--WNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFV 416 (480)
T ss_pred ecCCHHH---HhcCcccCeEE---eecc--cchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcC
Confidence 4677655 67888876663 3221 2389999999999999752 3333333 4456777652
Q ss_pred CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccc--hH---HHHHHHHHHHHHHHhh
Q 011969 415 SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSAR--WA---TEWEEHAKPLITEVIS 470 (474)
Q Consensus 415 ~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--w~---~~~~~~~~~~~~~~~~ 470 (474)
+.+++++++++++.+ ..++.+++|+++.++....+ .+ .++ +.++.++.++..
T Consensus 417 ~~e~l~~av~~vm~~---~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~-~~l~~~v~~~~~ 473 (480)
T PLN00164 417 EAAELERAVRSLMGG---GEEEGRKAREKAAEMKAACRKAVEEGGSSY-AALQRLAREIRH 473 (480)
T ss_pred cHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHh
Confidence 478999999999974 12235667777766442111 11 233 345666666554
No 166
>PLN03004 UDP-glycosyltransferase
Probab=95.27 E-value=0.24 Score=53.18 Aligned_cols=79 Identities=14% Similarity=0.202 Sum_probs=56.2
Q ss_pred CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec----ccccccccc-cCCcEEEeC--
Q 011969 342 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS----YSCIEELVK-VDKNGLLFS-- 414 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~----~~~~~e~v~-~~~~G~l~~-- 414 (474)
+++.+. .|+|+.+ +++++++..+. +++. -+.++||+++|+|+|+.. .......+. .-+.|+..+
T Consensus 334 ~g~~v~-~W~PQ~~---iL~H~~v~~Fv---TH~G--~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~ 404 (451)
T PLN03004 334 KGMVVK-SWAPQVP---VLNHKAVGGFV---THCG--WNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNES 404 (451)
T ss_pred CcEEEE-eeCCHHH---HhCCCccceEe---ccCc--chHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCC
Confidence 356665 4688876 68899996663 4331 248999999999999985 333444443 347776662
Q ss_pred -----CHHHHHHHHHHHHhC
Q 011969 415 -----SSSELADQLLMLFKG 429 (474)
Q Consensus 415 -----~~~~la~~i~~l~~~ 429 (474)
+.+++++++++++.+
T Consensus 405 ~~~~~~~e~l~~av~~vm~~ 424 (451)
T PLN03004 405 ETGFVSSTEVEKRVQEIIGE 424 (451)
T ss_pred cCCccCHHHHHHHHHHHhcC
Confidence 578999999999974
No 167
>PLN02167 UDP-glycosyltransferase family protein
Probab=95.16 E-value=0.45 Score=51.39 Aligned_cols=78 Identities=17% Similarity=0.225 Sum_probs=51.0
Q ss_pred cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----ccccc-ccccCCcEEEeC---
Q 011969 343 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEE-LVKVDKNGLLFS--- 414 (474)
Q Consensus 343 ~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e-~v~~~~~G~l~~--- 414 (474)
+..+. .|+|+.+ ++.+..+..+.+.... +.++||+++|+|+|+... ..... +++.-+.|+...
T Consensus 341 rg~v~-~w~PQ~~---iL~h~~vg~fvtH~G~-----nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~ 411 (475)
T PLN02167 341 RGLVC-GWAPQVE---ILAHKAIGGFVSHCGW-----NSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDY 411 (475)
T ss_pred Ceeee-ccCCHHH---HhcCcccCeEEeeCCc-----ccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeeccc
Confidence 34444 5787765 6777666555322222 289999999999999752 22222 244556676541
Q ss_pred --------CHHHHHHHHHHHHhC
Q 011969 415 --------SSSELADQLLMLFKG 429 (474)
Q Consensus 415 --------~~~~la~~i~~l~~~ 429 (474)
+.+++++++++++.+
T Consensus 412 ~~~~~~~~~~~~l~~av~~~m~~ 434 (475)
T PLN02167 412 VSAYGEIVKADEIAGAVRSLMDG 434 (475)
T ss_pred ccccCCcccHHHHHHHHHHHhcC
Confidence 578999999999974
No 168
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=94.93 E-value=1.7 Score=43.60 Aligned_cols=64 Identities=16% Similarity=0.370 Sum_probs=46.1
Q ss_pred EEE-EEEeCC-CChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEE
Q 011969 318 LLF-IITGKG-PDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 394 (474)
Q Consensus 318 ~~l-~ivG~g-~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia 394 (474)
+.+ +++|.+ |....+++.++... ++.+. .+.++++.++..||+.+. +. |..+.||+..|+|.++
T Consensus 186 ~nl~iV~gs~~p~l~~l~k~~~~~~--~i~~~---~~~~dma~LMke~d~aI~----Aa----GstlyEa~~lgvP~l~ 251 (318)
T COG3980 186 VNLHIVVGSSNPTLKNLRKRAEKYP--NINLY---IDTNDMAELMKEADLAIS----AA----GSTLYEALLLGVPSLV 251 (318)
T ss_pred eeEEEEecCCCcchhHHHHHHhhCC--CeeeE---ecchhHHHHHHhcchhee----cc----chHHHHHHHhcCCceE
Confidence 344 344543 45566666666654 77777 458999999999999997 22 4589999999999443
No 169
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=94.86 E-value=2.9 Score=39.83 Aligned_cols=48 Identities=27% Similarity=0.327 Sum_probs=38.9
Q ss_pred CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc
Q 011969 342 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 397 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~ 397 (474)
.++.......+.+++..+++.||++|. .... ..+=|+++|+|+|+.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~Is---~RlH-----~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 237 FNVIIIDYSLSPDELLELISQADLVIS---MRLH-----GAILALSLGVPVIAISY 284 (286)
T ss_pred cceeEecCCCCHHHHHHHHhcCCEEEe---cCCH-----HHHHHHHcCCCEEEEec
Confidence 455555555889999999999999997 4444 67889999999999764
No 170
>PLN02554 UDP-glycosyltransferase family protein
Probab=94.81 E-value=0.48 Score=51.27 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=51.7
Q ss_pred CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----cccc-cccccCCcEEEeC--
Q 011969 342 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIE-ELVKVDKNGLLFS-- 414 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~-e~v~~~~~G~l~~-- 414 (474)
+++.+. .|+|+.+ ++++..+..+. +++. -+.++||+.+|+|+|+... .... ..++.-+.|+..+
T Consensus 342 ~~g~v~-~W~PQ~~---iL~H~~v~~Fv---tH~G--~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~ 412 (481)
T PLN02554 342 DIGKVI-GWAPQVA---VLAKPAIGGFV---THCG--WNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKY 412 (481)
T ss_pred cCceEE-eeCCHHH---HhCCcccCccc---ccCc--cchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeecc
Confidence 356555 5788765 56666665552 3331 2389999999999999853 2222 3344556666541
Q ss_pred -------------CHHHHHHHHHHHHh
Q 011969 415 -------------SSSELADQLLMLFK 428 (474)
Q Consensus 415 -------------~~~~la~~i~~l~~ 428 (474)
+.+++++++++++.
T Consensus 413 ~~~~~~~~~~~~~~~e~l~~av~~vm~ 439 (481)
T PLN02554 413 WRGDLLAGEMETVTAEEIERGIRCLME 439 (481)
T ss_pred ccccccccccCeEcHHHHHHHHHHHhc
Confidence 57899999999996
No 171
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.70 E-value=0.085 Score=44.22 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=57.2
Q ss_pred EEEEeC-CCChHHHHHHHHHcCCCcEEE--ecCCCCccc--HHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEE
Q 011969 320 FIITGK-GPDKESYEEKIRRLRLKRVAF--RTMWLSAED--YPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 394 (474)
Q Consensus 320 l~ivG~-g~~~~~~~~~~~~l~l~~V~f--~g~~v~~~~--~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia 394 (474)
++|+|+ ......+++.+++.|.+.+.+ .+. ..... ++..++.||++|++...-+....-..--+|-..|+|++.
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~-~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGG-DEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCC-CccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 567775 456688999999999876666 333 33444 999999999999963322333333455566778999999
Q ss_pred ecccccccc
Q 011969 395 VSYSCIEEL 403 (474)
Q Consensus 395 ~~~~~~~e~ 403 (474)
+...+...+
T Consensus 81 ~~~~~~~~l 89 (97)
T PF10087_consen 81 SRSRGVSSL 89 (97)
T ss_pred ECCCCHHHH
Confidence 886555443
No 172
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=94.36 E-value=0.12 Score=50.12 Aligned_cols=103 Identities=14% Similarity=0.183 Sum_probs=60.7
Q ss_pred CCCCeEEEEEeecccCCCHHH--HHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh-HHH
Q 011969 256 PNRPALVVSSTSWTPDEDFGI--LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-ESY 332 (474)
Q Consensus 256 ~~~~~~i~~~G~l~~~k~~~~--Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~-~~~ 332 (474)
.+++.+++..|.-.+.|.... ..+.+..+.+ ....++++|.+.+. ++.
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~-----------------------------~~~~vvl~g~~~~~~~~~ 153 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKE-----------------------------RGYRVVLLGGPEEQEKEI 153 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCC-----------------------------CT-EEEE--SSHHHHHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHh-----------------------------hCceEEEEccchHHHHHH
Confidence 456667777777666666544 5555555533 22788888976552 222
Q ss_pred -HHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec
Q 011969 333 -EEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 333 -~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~ 396 (474)
++..+...-+.+.+.|. .+-.++..+++.||++|. ..+| .+==|.|+|+|+|+--
T Consensus 154 ~~~~~~~~~~~~~~~~~~-~~l~e~~ali~~a~~~I~---~Dtg-----~~HlA~a~~~p~v~lf 209 (247)
T PF01075_consen 154 ADQIAAGLQNPVINLAGK-TSLRELAALISRADLVIG---NDTG-----PMHLAAALGTPTVALF 209 (247)
T ss_dssp HHHHHTTHTTTTEEETTT-S-HHHHHHHHHTSSEEEE---ESSH-----HHHHHHHTT--EEEEE
T ss_pred HHHHHHhcccceEeecCC-CCHHHHHHHHhcCCEEEe---cCCh-----HHHHHHHHhCCEEEEe
Confidence 22223222236888888 899999999999999999 4555 4556889999999974
No 173
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=94.20 E-value=0.48 Score=47.33 Aligned_cols=86 Identities=12% Similarity=0.137 Sum_probs=58.8
Q ss_pred hcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhh-hccCC----------CchHHHHHHHHHHHHhhh
Q 011969 98 KIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLS-LSLGR----------RSHFVSIYRWIEKYYGKM 166 (474)
Q Consensus 98 ~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~-~~~~~----------~~~~~~~~~~~e~~~~~~ 166 (474)
...+.|++|+.+..+ +.+++..++..+|.|+++|=|+. |+-.. ..... +..+.+++..+-+.+++.
T Consensus 169 ~lP~advyHsvstGy--Agl~g~~~k~~~g~P~lLTEHGI-Y~RER~~ei~~a~w~~~~~~~r~~wi~~f~~l~~~~Y~~ 245 (268)
T PF11997_consen 169 PLPKADVYHSVSTGY--AGLLGALAKYRYGRPFLLTEHGI-YTREREIEILQADWIWESPYVRDLWIRFFESLSRLAYRA 245 (268)
T ss_pred cCCCCCEEecCCccH--HHHHHHHHHHHhCCCEEEecCCc-cHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 446889999988533 34457778888999999999998 33211 00101 112236677888899999
Q ss_pred cCEEEEeCHHHHHHHHHHhCC
Q 011969 167 ANGCLCVTQAMQHELAQNWGI 187 (474)
Q Consensus 167 ad~vi~vS~~~~~~l~~~~~~ 187 (474)
||.|+++.+..++ .+...|.
T Consensus 246 Ad~I~~l~~~n~~-~q~~~Ga 265 (268)
T PF11997_consen 246 ADRITPLYEYNRE-WQIELGA 265 (268)
T ss_pred hCeecccchhhHH-HHHHhCC
Confidence 9999999998664 4444454
No 174
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=94.09 E-value=1.6 Score=47.33 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=49.7
Q ss_pred cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----ccccccc-ccCCcEEEeC---
Q 011969 343 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELV-KVDKNGLLFS--- 414 (474)
Q Consensus 343 ~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~v-~~~~~G~l~~--- 414 (474)
++.+.+ |+|+. .++.+..+.++. +++. -+.++||+++|+|+|+... ......+ +.-+.|+...
T Consensus 344 g~~v~~-w~PQ~---~vL~h~~v~~fv---tH~G--~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~ 414 (477)
T PLN02863 344 GLVIRG-WAPQV---AILSHRAVGAFL---THCG--WNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGA 414 (477)
T ss_pred CEEecC-CCCHH---HHhcCCCcCeEE---ecCC--chHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCC
Confidence 555554 68874 467775555552 2221 2389999999999999753 3333433 3346776651
Q ss_pred ----CHHHHHHHHHHHHh
Q 011969 415 ----SSSELADQLLMLFK 428 (474)
Q Consensus 415 ----~~~~la~~i~~l~~ 428 (474)
+.+++++++.+++.
T Consensus 415 ~~~~~~~~v~~~v~~~m~ 432 (477)
T PLN02863 415 DTVPDSDELARVFMESVS 432 (477)
T ss_pred CCCcCHHHHHHHHHHHhh
Confidence 46789999998874
No 175
>PRK14986 glycogen phosphorylase; Provisional
Probab=93.98 E-value=0.51 Score=53.75 Aligned_cols=144 Identities=15% Similarity=0.169 Sum_probs=99.2
Q ss_pred cCCCCCeEEEEEeecccCCCHHH-HHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh---
Q 011969 254 LKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK--- 329 (474)
Q Consensus 254 ~~~~~~~~i~~~G~l~~~k~~~~-Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~--- 329 (474)
+.++. ++++++-|++..|...+ ++..+..+.+ |.+++........+++.|+-...
T Consensus 539 ldp~s-Lfd~qakR~heYKRq~LNil~~i~ry~~--------------------i~~~p~~~~~P~~~IFaGKAaP~y~~ 597 (815)
T PRK14986 539 VNPKA-LFDVQIKRIHEYKRQLMNVLHVITRYNR--------------------IKADPDAKWVPRVNIFAGKAASAYYM 597 (815)
T ss_pred cCccc-ceeeeehhhhhhhhhhHHHhhhHHHHHH--------------------HHhCCCcCCCCeEEEEeecCCCCcHH
Confidence 34444 37889999999999988 7777776654 22222222234788888864221
Q ss_pred -HHH----HHHHH----HcCC-C--cEEEecCCCCcccHHHHHhcccEEEeeccCC-CCCCCchHHHHHHhcCCcEEEec
Q 011969 330 -ESY----EEKIR----RLRL-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 330 -~~~----~~~~~----~l~l-~--~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s-~~e~~p~kv~Eama~G~PVia~~ 396 (474)
..+ .+.++ +-.+ + +|.|+.- .+.+-...++..||+-..- |. ..|..|..=+=+|..|.+-++|-
T Consensus 598 aK~iIk~I~~va~~in~Dp~v~~~lkVVFlen-Y~vslAe~lipg~Dv~eqi--s~ag~EASGTsnMK~alNGaLtlgtl 674 (815)
T PRK14986 598 AKHIIHLINDVAKVINNDPQIGDKLKVVFIPN-YSVSLAQLIIPAADLSEQI--SLAGTEASGTSNMKFALNGALTIGTL 674 (815)
T ss_pred HHHHHHHHHHHHHHhccChhhcCceeEEEeCC-CCHHHHHHhhhhhhhhhhC--CCCCccccCcchhhHHhcCceeeecc
Confidence 122 22233 1112 2 6999876 6778888899999999983 33 33777777888999999999999
Q ss_pred cccccccccc--CCcEEEeC-CHHHHHH
Q 011969 397 YSCIEELVKV--DKNGLLFS-SSSELAD 421 (474)
Q Consensus 397 ~~~~~e~v~~--~~~G~l~~-~~~~la~ 421 (474)
-|...|+.++ ++||+++. +.+++.+
T Consensus 675 DG~nvEi~e~vG~eN~~~fG~~~~ev~~ 702 (815)
T PRK14986 675 DGANVEMLEHVGEENIFIFGNTAEEVEA 702 (815)
T ss_pred CCchhHHHHhcCCCcEEEeCCCHHHHHH
Confidence 8988888875 78999996 4555544
No 176
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=93.58 E-value=0.98 Score=45.80 Aligned_cols=69 Identities=14% Similarity=0.054 Sum_probs=48.5
Q ss_pred CEEEEEEeCCC-ChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEe
Q 011969 317 RLLFIITGKGP-DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 395 (474)
Q Consensus 317 ~~~l~ivG~g~-~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~ 395 (474)
+..+++.|+++ +++..++.++. .+++.+.|. .+-.++..+++.||++|. ..+| .+==|-|+|+|+|+-
T Consensus 210 ~~~ivl~~G~~~e~~~~~~i~~~--~~~~~l~g~-~sL~elaali~~a~l~I~---nDSG-----p~HlA~A~g~p~val 278 (322)
T PRK10964 210 GLRIKLPWGAEHEEQRAKRLAEG--FPYVEVLPK-LSLEQVARVLAGAKAVVS---VDTG-----LSHLTAALDRPNITL 278 (322)
T ss_pred CCeEEEeCCCHHHHHHHHHHHcc--CCcceecCC-CCHHHHHHHHHhCCEEEe---cCCc-----HHHHHHHhCCCEEEE
Confidence 45677763344 44444443332 245777787 899999999999999998 4566 455588999999986
Q ss_pred c
Q 011969 396 S 396 (474)
Q Consensus 396 ~ 396 (474)
-
T Consensus 279 f 279 (322)
T PRK10964 279 Y 279 (322)
T ss_pred E
Confidence 4
No 177
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=92.84 E-value=1 Score=51.41 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=98.7
Q ss_pred cCCCCCeEEEEEeecccCCCHHH-HHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh---
Q 011969 254 LKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK--- 329 (474)
Q Consensus 254 ~~~~~~~~i~~~G~l~~~k~~~~-Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~--- 329 (474)
+.++.- ..+++-|++..|...+ ++..+..+.+ |.+++........+++.|+-...
T Consensus 526 ldp~sl-fdvq~KR~heYKRq~LNil~ii~~y~~--------------------i~~~p~~~~~P~~~IFaGKAaP~y~~ 584 (797)
T cd04300 526 VDPDSL-FDVQVKRIHEYKRQLLNVLHIIHLYNR--------------------IKENPNADIVPRTFIFGGKAAPGYYM 584 (797)
T ss_pred cCCCcc-EEEEeeechhhhhhhhHHHhhHHHHHH--------------------HHhCCCcCCCCeEEEEeccCCCCcHH
Confidence 344443 7889999999999998 7777776654 22232222234788888864221
Q ss_pred -HHHHHHHHHc--------CC-C--cEEEecCCCCcccHHHHHhcccEEEeeccCC-CCCCCchHHHHHHhcCCcEEEec
Q 011969 330 -ESYEEKIRRL--------RL-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 330 -~~~~~~~~~l--------~l-~--~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s-~~e~~p~kv~Eama~G~PVia~~ 396 (474)
..+-+.+..+ .+ + +|.|+.- -+.+-...++..||+-..- |. .-|..|..=+=+|..|.+.++|-
T Consensus 585 aK~iIklI~~va~~in~Dp~v~~~lkVVFlen-Y~VslAe~iipaaDvseqi--s~ag~EASGTsnMK~~lNGaltlgtl 661 (797)
T cd04300 585 AKLIIKLINAVADVVNNDPDVGDKLKVVFLPN-YNVSLAEKIIPAADLSEQI--STAGKEASGTGNMKFMLNGALTIGTL 661 (797)
T ss_pred HHHHHHHHHHHHHHhccChhcCCceEEEEeCC-CChHHHHHhhhhhhhhhhC--CCCCccccCCchhhHHhcCceeeecc
Confidence 2222222221 12 2 6899876 6778888999999999982 33 33777777788999999999998
Q ss_pred cccccccccc--CCcEEEeC-CHHHHHH
Q 011969 397 YSCIEELVKV--DKNGLLFS-SSSELAD 421 (474)
Q Consensus 397 ~~~~~e~v~~--~~~G~l~~-~~~~la~ 421 (474)
-|...|+.+. ++|++++. +.+++.+
T Consensus 662 DGanvEi~e~vG~eN~fiFG~~~~ev~~ 689 (797)
T cd04300 662 DGANVEIAEEVGEENIFIFGLTAEEVEA 689 (797)
T ss_pred cchhHHHHHHhCcCcEEEeCCCHHHHHH
Confidence 8888888776 78999996 5555443
No 178
>PLN02207 UDP-glycosyltransferase
Probab=92.67 E-value=2.9 Score=45.12 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=51.2
Q ss_pred CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----cccccc-cccCCcEEEe---
Q 011969 342 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEEL-VKVDKNGLLF--- 413 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~-v~~~~~G~l~--- 413 (474)
+++.+. .|+|+.+ ++++..+..+. +++. -+.++||+.+|+|+|+... ...... ++..+.|+-+
T Consensus 332 ~~g~i~-~W~PQ~~---IL~H~~vg~Fv---TH~G--wnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~ 402 (468)
T PLN02207 332 GRGMIC-GWSPQVE---ILAHKAVGGFV---SHCG--WNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLD 402 (468)
T ss_pred CCeEEE-EeCCHHH---Hhcccccceee---ecCc--cccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecc
Confidence 355555 5788876 46666675552 3321 1388999999999999753 233333 3335666632
Q ss_pred --------CCHHHHHHHHHHHHh
Q 011969 414 --------SSSSELADQLLMLFK 428 (474)
Q Consensus 414 --------~~~~~la~~i~~l~~ 428 (474)
-+.+++++++++++.
T Consensus 403 ~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 403 YRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred cccccCCcccHHHHHHHHHHHHh
Confidence 157899999999996
No 179
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=92.27 E-value=3.9 Score=44.20 Aligned_cols=77 Identities=10% Similarity=-0.142 Sum_probs=49.9
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHH-----HHHHHHHHHhhhcCEEEEeC
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVS-----IYRWIEKYYGKMANGCLCVT 174 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~~ad~vi~vS 174 (474)
..||+||.|. ....+++.+++...++|.+.+.|.++-+.+..+.-.+..+.. .....|...++.||.||+-|
T Consensus 400 ~~PdlI~GnY---sDgnlvA~LLs~~lgv~~~~iaHsLek~Ky~~s~~~w~e~e~~Yhfs~qftAd~iamn~adfIItST 476 (550)
T PF00862_consen 400 GKPDLIIGNY---SDGNLVASLLSRKLGVTQCFIAHSLEKTKYEDSDLYWKEIEEKYHFSCQFTADLIAMNAADFIITST 476 (550)
T ss_dssp S--SEEEEEH---HHHHHHHHHHHHHHT-EEEEE-SS-HHHHHHTTTTTSHHHHHHH-HHHHHHHHHHHHHHSSEEEESS
T ss_pred CCCcEEEecc---CcchHHHHHHHhhcCCceehhhhccccccccccCCCHHHHHhhccchhhhhHHHHHhhcCCEEEEcc
Confidence 6899999987 677777888888889999999999985444322222333321 12244677788999999999
Q ss_pred HHHHH
Q 011969 175 QAMQH 179 (474)
Q Consensus 175 ~~~~~ 179 (474)
.....
T Consensus 477 ~QEI~ 481 (550)
T PF00862_consen 477 YQEIA 481 (550)
T ss_dssp HHHHH
T ss_pred hHhhc
Confidence 85543
No 180
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=92.24 E-value=4.2 Score=45.92 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=87.1
Q ss_pred cCCCCCeEEEEEeecccCCCHHH-HHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh---
Q 011969 254 LKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK--- 329 (474)
Q Consensus 254 ~~~~~~~~i~~~G~l~~~k~~~~-Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~--- 329 (474)
+.++. +..+++-|++..|...+ ++..+..+.+ |.+++........+++.|+-...
T Consensus 440 ldp~s-lfdv~~rR~heYKRq~LniL~ii~~y~r--------------------ik~~p~~~~~Pv~~IFaGKAhP~d~~ 498 (713)
T PF00343_consen 440 LDPDS-LFDVQARRFHEYKRQLLNILHIIDRYNR--------------------IKNNPNKKIRPVQFIFAGKAHPGDYM 498 (713)
T ss_dssp --TTS-EEEEEES-SCCCCTHHHHHHHHHHHHHH--------------------HHHSTTSCCS-EEEEEE----TT-HH
T ss_pred CCcch-hhhhhhhhcccccccCcccccHHHHHHH--------------------HHhcccCCCCCeEEEEeccCCCCcHH
Confidence 33443 47789999999999888 4455555433 22222222334789999965222
Q ss_pred -HHHHHHHHH--------cCC-C--cEEEecCCCCcccHHHHHhcccEEEeeccCCC-CCCCchHHHHHHhcCCcEEEec
Q 011969 330 -ESYEEKIRR--------LRL-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS-GLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 330 -~~~~~~~~~--------l~l-~--~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~-~e~~p~kv~Eama~G~PVia~~ 396 (474)
.++-+.+.. -.+ + +|.|+.- -+-+-...++..|||-+.- |.. .|..|..=+=+|..|.+-+++-
T Consensus 499 gK~iIk~I~~va~~in~Dp~v~~~lkVvFlen-YdvslA~~lipg~DVwln~--p~~p~EASGTSgMK~~~NGaL~lstl 575 (713)
T PF00343_consen 499 GKEIIKLINNVAEVINNDPEVGDRLKVVFLEN-YDVSLAEKLIPGVDVWLNI--PTRPKEASGTSGMKAAMNGALNLSTL 575 (713)
T ss_dssp HHHHHHHHHHHHHHHCT-TTTCCGEEEEEETT--SHHHHHHHGGG-SEEEE-----TTSSSS-SHHHHHHHTT-EEEEES
T ss_pred HHHHHHHHHHHHHHHhcChhhccceeEEeecC-CcHHHHHHHhhhhhhhhhC--CCCCccccCCCcchhhcCCCeEEecc
Confidence 222222222 123 2 6899976 6777888899999999983 333 4888999999999999999998
Q ss_pred cccccccccc--CCcEEEeC-CHHHHH
Q 011969 397 YSCIEELVKV--DKNGLLFS-SSSELA 420 (474)
Q Consensus 397 ~~~~~e~v~~--~~~G~l~~-~~~~la 420 (474)
-|...|+.+. .+|.+++. +.+++.
T Consensus 576 DG~niEi~e~vG~eN~fiFG~~~~ev~ 602 (713)
T PF00343_consen 576 DGWNIEIAEAVGEENIFIFGLTAEEVE 602 (713)
T ss_dssp STCHHHHHHHH-GGGSEEES-BHHHHH
T ss_pred cchhHHHHHhcCCCcEEEcCCCHHHHH
Confidence 8888887653 46889997 555543
No 181
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=92.04 E-value=1.2 Score=50.83 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=99.1
Q ss_pred cCCCCCeEEEEEeecccCCCHHH-HHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh---
Q 011969 254 LKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK--- 329 (474)
Q Consensus 254 ~~~~~~~~i~~~G~l~~~k~~~~-Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~--- 329 (474)
+.++.- ..+++-|++..|...+ ++..+..+.+ |.+++........+++.|+-...
T Consensus 523 ldp~sl-fdvq~KR~heYKRq~LNil~ii~~y~~--------------------i~~~p~~~~~P~~~IFaGKAaP~y~~ 581 (794)
T TIGR02093 523 VDPNSI-FDVQVKRLHEYKRQLLNVLHVIYLYNR--------------------IKEDPPKDIVPRTVIFGGKAAPGYHM 581 (794)
T ss_pred cCcccc-chhhheechhhhHHHHHHhhhHHHHHH--------------------HHhCCCcCCCCeEEEEEecCCCCcHH
Confidence 344443 7788999999999888 7777776655 22222222234688888864221
Q ss_pred -HHHHHHHHHcC--------C-C--cEEEecCCCCcccHHHHHhcccEEEeeccCC-CCCCCchHHHHHHhcCCcEEEec
Q 011969 330 -ESYEEKIRRLR--------L-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 330 -~~~~~~~~~l~--------l-~--~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s-~~e~~p~kv~Eama~G~PVia~~ 396 (474)
..+-+.+-... + + +|.|+.- -+.+-...++..||+-..- |. .-|..|..=+=+|..|.+-++|-
T Consensus 582 aK~iIklI~~va~~iN~Dp~v~~~lkVVFlen-Y~VslAe~iipaaDvseqi--stag~EASGTsnMK~alNGaltlgtl 658 (794)
T TIGR02093 582 AKLIIKLINSVAEVVNNDPAVGDKLKVVFVPN-YNVSLAELIIPAADLSEQI--STAGKEASGTGNMKFMLNGALTIGTL 658 (794)
T ss_pred HHHHHHHHHHHHHHhccChhhCCceeEEEeCC-CChHHHHHhhhhhhhhhhC--CCCCccccCcchhHHHhcCcceeecc
Confidence 22222222222 2 2 6999976 6778888999999999983 33 33777777788999999999998
Q ss_pred cccccccccc--CCcEEEeC-CHHHHHH
Q 011969 397 YSCIEELVKV--DKNGLLFS-SSSELAD 421 (474)
Q Consensus 397 ~~~~~e~v~~--~~~G~l~~-~~~~la~ 421 (474)
-|...|+.++ ++|++++. +.+++.+
T Consensus 659 DGanvEi~e~vG~eN~fiFG~~~~ev~~ 686 (794)
T TIGR02093 659 DGANVEIREEVGAENIFIFGLTVEEVEA 686 (794)
T ss_pred cchhHHHHHHhCcccEEEcCCCHHHHHH
Confidence 8888888776 78999996 5555443
No 182
>PLN03015 UDP-glucosyl transferase
Probab=91.72 E-value=22 Score=38.46 Aligned_cols=89 Identities=18% Similarity=0.200 Sum_probs=57.9
Q ss_pred CCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----ccccccc-ccCCcEEEeC--------C
Q 011969 349 MWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELV-KVDKNGLLFS--------S 415 (474)
Q Consensus 349 ~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~v-~~~~~G~l~~--------~ 415 (474)
.|+|+.+ ++.+..+..+. +++. -+.++||+.+|+|+|+... ......+ +.-+.|+-.. +
T Consensus 341 ~W~PQ~~---vL~h~~vg~fv---tH~G--wnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~ 412 (470)
T PLN03015 341 QWAPQVE---ILSHRSIGGFL---SHCG--WSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIG 412 (470)
T ss_pred ecCCHHH---HhccCccCeEE---ecCC--chhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCccC
Confidence 5788876 46677776663 3221 2389999999999999753 2222333 4446666652 4
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 416 SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 416 ~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
.++++++++.++.. ..++.++||+++.++.
T Consensus 413 ~e~i~~~v~~lm~~---~~eeg~~~R~ra~~lk 442 (470)
T PLN03015 413 REEVASLVRKIVAE---EDEEGQKIRAKAEEVR 442 (470)
T ss_pred HHHHHHHHHHHHcc---CcccHHHHHHHHHHHH
Confidence 78999999999952 1234567777777654
No 183
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=90.78 E-value=3 Score=41.18 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=45.8
Q ss_pred CCCEEEEEEeCCCCh--HHHHHHHHHc-CCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCc
Q 011969 315 YPRLLFIITGKGPDK--ESYEEKIRRL-RLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLP 391 (474)
Q Consensus 315 ~~~~~l~ivG~g~~~--~~~~~~~~~l-~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~P 391 (474)
.|+..++|-=...+. ... +...++ ..+++.+... .-++..++..||.++.. ++. +-+||+.+|+|
T Consensus 153 ~p~~~lvvK~HP~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~Ll~~s~~Vvti---nSt-----vGlEAll~gkp 220 (269)
T PF05159_consen 153 NPDAKLVVKPHPDERGGNKY-SYLEELPNLPNVVIIDD---DVNLYELLEQSDAVVTI---NST-----VGLEALLHGKP 220 (269)
T ss_pred CCCCEEEEEECchhhCCCCh-hHhhhhhcCCCeEEECC---CCCHHHHHHhCCEEEEE---CCH-----HHHHHHHcCCc
Confidence 568888766543111 111 222222 3456666643 67899999999999982 333 55999999999
Q ss_pred EEEec
Q 011969 392 VCAVS 396 (474)
Q Consensus 392 Via~~ 396 (474)
|++-.
T Consensus 221 Vi~~G 225 (269)
T PF05159_consen 221 VIVFG 225 (269)
T ss_pred eEEec
Confidence 99964
No 184
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=90.75 E-value=1.1 Score=51.07 Aligned_cols=144 Identities=15% Similarity=0.168 Sum_probs=98.1
Q ss_pred cCCCCCeEEEEEeecccCCCHHH-HHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh---
Q 011969 254 LKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK--- 329 (474)
Q Consensus 254 ~~~~~~~~i~~~G~l~~~k~~~~-Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~--- 329 (474)
+.++. ++.+++-|++..|...+ ++..+..+.+ |.+++........+++.|+-...
T Consensus 525 ldp~s-lfdvq~kR~heYKRq~Lnil~ii~~y~~--------------------i~~~p~~~~~P~~~IFaGKAaP~y~~ 583 (798)
T PRK14985 525 INPQA-IFDVQIKRLHEYKRQHLNLLHILALYKE--------------------IRENPQADRVPRVFLFGAKAAPGYYL 583 (798)
T ss_pred cCchh-cchhhHhhhhhhhhhhhHhhhhHHHHHH--------------------HHhCCCcCCCCeEEEEeecCCCCcHH
Confidence 34443 37788999999999888 7777766654 22232222234788888864221
Q ss_pred -HHHHHHHHHcC--------C-C--cEEEecCCCCcccHHHHHhcccEEEeeccCC-CCCCCchHHHHHHhcCCcEEEec
Q 011969 330 -ESYEEKIRRLR--------L-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 330 -~~~~~~~~~l~--------l-~--~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s-~~e~~p~kv~Eama~G~PVia~~ 396 (474)
..+-+.+.... + + +|.|+.- .+.+-...++..||+...- |. .-|..|..=+=+|..|.+-++|-
T Consensus 584 aK~iIklI~~va~~in~Dp~v~~~lkVVFlen-Y~VslAe~lipaaDvseqi--s~ag~EASGTsnMK~amNGaLtlgtl 660 (798)
T PRK14985 584 AKNIIFAINKVAEVINNDPLVGDKLKVVFLPD-YCVSAAELLIPAADISEQI--STAGKEASGTGNMKLALNGALTVGTL 660 (798)
T ss_pred HHHHHHHHHHHHHHhcCChhhCCceeEEEeCC-CChHHHHHHhhhhhhhhhC--CCCCccccCcchhHHHhcCceeeecc
Confidence 22222222221 1 2 6999876 7778888999999999982 33 33777777788999999999998
Q ss_pred cccccccccc--CCcEEEeC-CHHHHHH
Q 011969 397 YSCIEELVKV--DKNGLLFS-SSSELAD 421 (474)
Q Consensus 397 ~~~~~e~v~~--~~~G~l~~-~~~~la~ 421 (474)
-|...|+.+. ++||+++. +.+++.+
T Consensus 661 DGanvEi~e~vG~eN~f~fG~~~~ev~~ 688 (798)
T PRK14985 661 DGANVEIAEQVGEENIFIFGHTVEQVKA 688 (798)
T ss_pred cchHHHHHHHhCcCcEEEeCCCHHHHHH
Confidence 8888888765 78999996 4554443
No 185
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=90.56 E-value=25 Score=36.98 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=52.2
Q ss_pred CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccccccccccc--CCcEEEeC----C
Q 011969 342 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKV--DKNGLLFS----S 415 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~--~~~G~l~~----~ 415 (474)
.++.+... -..+++-..++++|+.|- ...+ .++=|++.|+|+|+..+..-.+-+-+ +-.|+..+ +
T Consensus 266 ~~i~~~~d-~~~~~~~~~l~~~dl~Vg---~R~H-----saI~al~~g~p~i~i~Y~~K~~~l~~~~gl~~~~~~i~~~~ 336 (385)
T COG2327 266 AEILVSSD-EYAEELGGILAACDLIVG---MRLH-----SAIMALAFGVPAIAIAYDPKVRGLMQDLGLPGFAIDIDPLD 336 (385)
T ss_pred cceEeecc-hHHHHHHHHhccCceEEe---ehhH-----HHHHHHhcCCCeEEEeecHHHHHHHHHcCCCcccccCCCCc
Confidence 57777743 113677889999999996 3334 78999999999999876432222211 22344443 4
Q ss_pred HHHHHHHHHHHHhC
Q 011969 416 SSELADQLLMLFKG 429 (474)
Q Consensus 416 ~~~la~~i~~l~~~ 429 (474)
.+.+.+...+.+.+
T Consensus 337 ~~~l~~~~~e~~~~ 350 (385)
T COG2327 337 AEILSAVVLERLTK 350 (385)
T ss_pred hHHHHHHHHHHHhc
Confidence 77777777777665
No 186
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=90.17 E-value=3.5 Score=38.34 Aligned_cols=67 Identities=24% Similarity=0.311 Sum_probs=37.5
Q ss_pred CCCCEEEEeCCCC-hhHHHHHHHHHhh--CCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHH
Q 011969 100 ASPDVFLVQNPPS-VPTLVAVKWASSL--RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQA 176 (474)
Q Consensus 100 ~~~Dvi~~~~~~~-~~~~~~~~~~~~~--~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~ 176 (474)
.+||+|++++|.. +|..+++++.+.+ .+.++|+ +-.+. .....+.- -|.+++.||.+++.-++
T Consensus 91 ~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIy-IES~a------Rv~~lSlT-------Gklly~~aD~f~VQW~~ 156 (170)
T PF08660_consen 91 ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIY-IESFA------RVKTLSLT-------GKLLYPFADRFIVQWEE 156 (170)
T ss_pred hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEE-EEeee------ecCCCchH-------HHHHHHhCCEEEEcCHH
Confidence 7899999998743 3444334433322 2777766 22221 01112211 23445579999999997
Q ss_pred HHHH
Q 011969 177 MQHE 180 (474)
Q Consensus 177 ~~~~ 180 (474)
+++.
T Consensus 157 l~~~ 160 (170)
T PF08660_consen 157 LAEK 160 (170)
T ss_pred HHhH
Confidence 7754
No 187
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=89.88 E-value=2.9 Score=45.37 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=53.8
Q ss_pred cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----ccccccc-ccCCcEEEeC---
Q 011969 343 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELV-KVDKNGLLFS--- 414 (474)
Q Consensus 343 ~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~v-~~~~~G~l~~--- 414 (474)
++.+. .|+|+.+ ++.+..+..+. +++. -+++.||+.+|+|+|+... ......+ +.-+.|+..+
T Consensus 339 g~vv~-~W~PQ~~---iL~h~~vg~Fi---tH~G--~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~ 409 (481)
T PLN02992 339 GFVVP-SWAPQAE---ILAHQAVGGFL---THCG--WSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPK 409 (481)
T ss_pred CEEEe-ecCCHHH---HhCCcccCeeE---ecCc--hhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCC
Confidence 46665 4688765 67788876652 3331 2489999999999999863 3333444 3556676662
Q ss_pred ---CHHHHHHHHHHHHhC
Q 011969 415 ---SSSELADQLLMLFKG 429 (474)
Q Consensus 415 ---~~~~la~~i~~l~~~ 429 (474)
+.+++++++.+++.+
T Consensus 410 ~~~~~~~l~~av~~vm~~ 427 (481)
T PLN02992 410 EVISRSKIEALVRKVMVE 427 (481)
T ss_pred CcccHHHHHHHHHHHhcC
Confidence 578999999999974
No 188
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=89.77 E-value=5 Score=42.94 Aligned_cols=106 Identities=18% Similarity=0.287 Sum_probs=59.9
Q ss_pred CCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEe
Q 011969 316 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 395 (474)
Q Consensus 316 ~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~ 395 (474)
+++.|++.=.+.....+.+.....+..+|.+. .|+|+.++. +.+..+..+. +++ |++ .++|+..+|+|+|+.
T Consensus 309 ~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~-~W~PQ~~ll--l~H~~v~~Fv---THg-G~n-St~E~~~~GvP~v~~ 380 (496)
T KOG1192|consen 309 QGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLS-KWAPQNDLL--LDHPAVGGFV---THG-GWN-STLESIYSGVPMVCV 380 (496)
T ss_pred CCceEEEEecCCcchhhhhcCCCCCcCceEEe-cCCCcHHHh--cCCCcCcEEE---ECC-ccc-HHHHHHhcCCceecC
Confidence 56666666544332221111111112367776 579998877 5555455552 333 233 669999999999976
Q ss_pred c----cc-ccccccccCCcEEEeC---CHHHHHHHHHHHHhC
Q 011969 396 S----YS-CIEELVKVDKNGLLFS---SSSELADQLLMLFKG 429 (474)
Q Consensus 396 ~----~~-~~~e~v~~~~~G~l~~---~~~~la~~i~~l~~~ 429 (474)
. .. ....+.+++..|++.. +..++.+++..++.+
T Consensus 381 Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~ 422 (496)
T KOG1192|consen 381 PLFGDQPLNARLLVRHGGGGVLDKRDLVSEELLEAIKEILEN 422 (496)
T ss_pred CccccchhHHHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcC
Confidence 4 22 2334444555555553 233488888888774
No 189
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=89.17 E-value=32 Score=36.11 Aligned_cols=47 Identities=23% Similarity=0.323 Sum_probs=41.0
Q ss_pred cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc
Q 011969 343 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 398 (474)
Q Consensus 343 ~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~ 398 (474)
.+.++++ +|++++..++..||+-++ +||+ +++=|.-+|+|.|=.-++
T Consensus 245 ~l~~lPF-~~Q~~yD~LLw~cD~NfV-----RGED---SfVRAqwAgkPFvWhIYp 291 (374)
T PF10093_consen 245 TLHVLPF-VPQDDYDRLLWACDFNFV-----RGED---SFVRAQWAGKPFVWHIYP 291 (374)
T ss_pred EEEECCC-CCHHHHHHHHHhCccceE-----ecch---HHHHHHHhCCCceEecCc
Confidence 6888888 999999999999999998 6764 589999999999976554
No 190
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=86.46 E-value=2.8 Score=34.68 Aligned_cols=73 Identities=8% Similarity=-0.065 Sum_probs=43.0
Q ss_pred cCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEE
Q 011969 53 HPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIV 132 (474)
Q Consensus 53 ~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~ 132 (474)
.+|++++.+|..+ ......++..+.. +.++..++.+ ++.|+||.|...+.... =+.+.++..|.+.|+
T Consensus 13 tngLKVYYlP~~~--~~~~~t~Pt~~~~--------~pl~R~Ilir-E~I~IVHgH~a~S~l~h-E~i~hA~~mGlktVf 80 (90)
T PF08288_consen 13 TNGLKVYYLPLKV--FYNQCTLPTLFGS--------FPLLRNILIR-ERIDIVHGHQAFSTLCH-EAILHARTMGLKTVF 80 (90)
T ss_pred CCCeEEEeecchh--hhcCcchHHHHHh--------hHHHHHHHHH-cCeeEEEeehhhhHHHH-HHHHHHHhCCCcEEe
Confidence 4589999998332 2222222222211 1222222223 89999999985332222 255677788999999
Q ss_pred EecCc
Q 011969 133 DWHNF 137 (474)
Q Consensus 133 ~~h~~ 137 (474)
+=|+.
T Consensus 81 TDHSL 85 (90)
T PF08288_consen 81 TDHSL 85 (90)
T ss_pred ecccc
Confidence 99986
No 191
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=81.55 E-value=10 Score=34.75 Aligned_cols=69 Identities=16% Similarity=0.269 Sum_probs=42.6
Q ss_pred cCCCCEEEEeCCCChhHHH-HHHHHHh--hCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCH
Q 011969 99 IASPDVFLVQNPPSVPTLV-AVKWASS--LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQ 175 (474)
Q Consensus 99 ~~~~Dvi~~~~~~~~~~~~-~~~~~~~--~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~ 175 (474)
..+||+|+++.| +++.+ +..+.++ +.++|++.-+=|+. .-... ++...+|..++.|+
T Consensus 87 ~~~PD~IIsThp--~~~~~~l~~lk~~~~~~~~p~~tvvTD~~-------~~H~~-----------W~~~~~D~y~Vase 146 (169)
T PF06925_consen 87 EFQPDLIISTHP--FPAQVPLSRLKRRGRLPNIPVVTVVTDFD-------TVHPF-----------WIHPGVDRYFVASE 146 (169)
T ss_pred hcCCCEEEECCc--chhhhHHHHHHHhhcccCCcEEEEEcCCC-------CCCcC-----------eecCCCCEEEECCH
Confidence 389999999987 33443 3333222 22567654444441 00111 12357999999999
Q ss_pred HHHHHHHHHhCCc
Q 011969 176 AMQHELAQNWGIK 188 (474)
Q Consensus 176 ~~~~~l~~~~~~~ 188 (474)
.+++.+.+ .|++
T Consensus 147 ~~~~~l~~-~Gi~ 158 (169)
T PF06925_consen 147 EVKEELIE-RGIP 158 (169)
T ss_pred HHHHHHHH-cCCC
Confidence 99999988 4776
No 192
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=77.20 E-value=3.9 Score=40.62 Aligned_cols=59 Identities=14% Similarity=0.278 Sum_probs=41.0
Q ss_pred cccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcC-CcEEEec--ccccccccccCCcEEEeC
Q 011969 353 AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG-LPVCAVS--YSCIEELVKVDKNGLLFS 414 (474)
Q Consensus 353 ~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G-~PVia~~--~~~~~e~v~~~~~G~l~~ 414 (474)
..++.+.|+.|..+++| ........-++|||++| +|||.++ .-...+++.=....+.++
T Consensus 227 ~~~~~~~l~~S~FCL~p---~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~ldw~~fsv~v~ 288 (302)
T PF03016_consen 227 PSEYMELLRNSKFCLCP---RGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVLDWSRFSVRVP 288 (302)
T ss_pred chHHHHhcccCeEEEEC---CCCCcccchHHHHhhhceeeEEecCcccCCcccccCHHHEEEEEC
Confidence 45689999999999995 21122566899999999 6888876 345566663334445554
No 193
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=76.43 E-value=1e+02 Score=32.24 Aligned_cols=47 Identities=30% Similarity=0.371 Sum_probs=40.7
Q ss_pred cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc
Q 011969 343 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 398 (474)
Q Consensus 343 ~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~ 398 (474)
.|+++++ ++++++..++-.||+-++ +||+ +++=|.-+|+|.|=--++
T Consensus 243 ~~~~LPf-~~Q~~yD~LLW~cD~NfV-----RGED---SFVRAqWAgkPfvWhIYP 289 (371)
T TIGR03837 243 TVAVLPF-VPQDDYDRLLWACDLNFV-----RGED---SFVRAQWAGKPFVWHIYP 289 (371)
T ss_pred EEEEcCC-CChhhHHHHHHhChhcEe-----echh---HHHHHHHcCCCceeeccc
Confidence 5888888 999999999999999998 6664 589999999999976543
No 194
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=76.21 E-value=78 Score=33.75 Aligned_cols=110 Identities=12% Similarity=0.102 Sum_probs=62.9
Q ss_pred CCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecC---------------CCCcccHHHHHhcccEEEeeccCCCCCCCch
Q 011969 316 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTM---------------WLSAEDYPLLLGSADLGVCLHTSSSGLDLPM 380 (474)
Q Consensus 316 ~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~---------------~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~ 380 (474)
.+.+++++|-|..-+..-+.....|..+|.+.+. .++.+++..++..+|+++.. |.+...-++.
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvViss-Tsa~~~ii~~ 255 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISS-TSAPHPIITR 255 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEe-cCCCccccCH
Confidence 4567999998865544444444444444444432 25668999999999999983 1222222344
Q ss_pred HHH-HHHhcCCcEEEecccccccccccC--CcEEEeCCHHHHHHHHHHH
Q 011969 381 KVV-DMFGCGLPVCAVSYSCIEELVKVD--KNGLLFSSSSELADQLLML 426 (474)
Q Consensus 381 kv~-Eama~G~PVia~~~~~~~e~v~~~--~~G~l~~~~~~la~~i~~l 426 (474)
..+ +++.-....+..|.+..+++-.+- -+|+-.=|.|+|......-
T Consensus 256 ~~ve~a~~~r~~~livDiavPRdie~~v~~l~~v~l~~iDDL~~iv~~n 304 (414)
T COG0373 256 EMVERALKIRKRLLIVDIAVPRDVEPEVGELPNVFLYTIDDLEEIVEEN 304 (414)
T ss_pred HHHHHHHhcccCeEEEEecCCCCCCccccCcCCeEEEehhhHHHHHHHh
Confidence 333 444444556888888777753221 1234444566665554443
No 195
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=75.51 E-value=52 Score=30.60 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=46.4
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (474)
..+|+|++++--.+.++ ..+...+.+.|.++..|+.-..+ ..+-+..+.+.. ....-...-.||.|+..|....+
T Consensus 58 ~~~dll~aTsmldLa~l--~gL~p~l~~~p~ilYFHENQl~Y-P~~~~~~rd~~~--~~~ni~saLaAD~v~FNS~~nr~ 132 (168)
T PF12038_consen 58 HSYDLLFATSMLDLATL--RGLRPDLANVPKILYFHENQLAY-PVSPGQERDFQY--GMNNIYSALAADRVVFNSAFNRD 132 (168)
T ss_pred cCCCEEEeeccccHHHH--HhhccCCCCCCEEEEEecCcccC-CCCCCccccccH--HHHHHHHHHhceeeeecchhhHH
Confidence 67899999985443333 22333567899999999863211 111122232222 12222233368999999998877
Q ss_pred HHHH
Q 011969 180 ELAQ 183 (474)
Q Consensus 180 ~l~~ 183 (474)
.+..
T Consensus 133 sFL~ 136 (168)
T PF12038_consen 133 SFLD 136 (168)
T ss_pred HHHH
Confidence 6655
No 196
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=72.25 E-value=56 Score=35.26 Aligned_cols=88 Identities=9% Similarity=0.235 Sum_probs=60.7
Q ss_pred cccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcC-CcEEEecc--cccccccccCCcEEEeCCHHHHHHHHHHHHhC
Q 011969 353 AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG-LPVCAVSY--SCIEELVKVDKNGLLFSSSSELADQLLMLFKG 429 (474)
Q Consensus 353 ~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G-~PVia~~~--~~~~e~v~~~~~G~l~~~~~~la~~i~~l~~~ 429 (474)
...+.+.++.|-.+++| ...+.....++||+..| +|||.++. ....+.++-..-++.++ .+++-+.|.+++..
T Consensus 334 ~~~y~~~m~~S~FCL~p---~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~-~~~v~~~~~~iL~~ 409 (464)
T KOG1021|consen 334 PLNYMEGMQDSKFCLCP---PGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVP-EKDVPELIKNILLS 409 (464)
T ss_pred cchHHHHhhcCeEEECC---CCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEE-HHHhhhHHHHHHHh
Confidence 47889999999999995 33333344899999999 69999984 45556555445566666 56666665666554
Q ss_pred CCCCHHHHHHHHHHHHH
Q 011969 430 FPDDSDVLKKLRNGTLE 446 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~~~ 446 (474)
.+ .++..+|+++...
T Consensus 410 i~--~~~~~~m~~~v~~ 424 (464)
T KOG1021|consen 410 IP--EEEVLRMRENVIR 424 (464)
T ss_pred cC--HHHHHHHHHHHHH
Confidence 32 4556777777764
No 197
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=71.69 E-value=51 Score=34.17 Aligned_cols=141 Identities=11% Similarity=0.030 Sum_probs=80.3
Q ss_pred CCCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCC---CCcccHH----HHHhcccEEEeeccCCCCCCCchHHHHHHh
Q 011969 315 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW---LSAEDYP----LLLGSADLGVCLHTSSSGLDLPMKVVDMFG 387 (474)
Q Consensus 315 ~~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~---v~~~~~~----~~l~~adv~v~~~~~s~~e~~p~kv~Eama 387 (474)
..+.+++++|.|...+..-+...+.|..+|.+...- ++.++.. .+...+|+.++.. ++.+-..|....|.+.
T Consensus 172 l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t-~~Tas~~p~i~~~~~~ 250 (338)
T PRK00676 172 SKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGS-SESAYAFPHLSWESLA 250 (338)
T ss_pred ccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcC-CcCCCCCceeeHHHHh
Confidence 356799999999877766667777777778877652 1234433 6677999999831 1134445666666665
Q ss_pred cCCcEEEecccccccccc-cCCcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Q 011969 388 CGLPVCAVSYSCIEELVK-VDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPL 464 (474)
Q Consensus 388 ~G~PVia~~~~~~~e~v~-~~~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 464 (474)
.-.+-+..|.+-.+++-. ....|...=|.|+|.+...+=++ .+++....+..+. +..-..-||..-++.
T Consensus 251 ~~~~r~~iDLAvPRdId~v~~~~~v~Ly~iDdL~~i~~~n~~-------~R~~~~~~ae~iI-~~~~~~~~~~~~~~~ 320 (338)
T PRK00676 251 DIPDRIVFDFNVPRTFPWSETPFPHRYLDMDFISEWVQKHLQ-------CRKEVNNKHKLSL-REAAYKQWESYEKKL 320 (338)
T ss_pred hccCcEEEEecCCCCCccccccCCcEEEEhHHHHHHHHHHHH-------HHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 332245667666666421 11122222367777766665433 3444444444443 233345576655554
No 198
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=69.78 E-value=50 Score=30.34 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=28.9
Q ss_pred cccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEe
Q 011969 353 AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 395 (474)
Q Consensus 353 ~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~ 395 (474)
...+.++++.||+++.= ...| .++|-+..|+|.|..
T Consensus 71 ~psl~e~I~~AdlVIsH--AGaG-----S~letL~l~KPlivV 106 (170)
T KOG3349|consen 71 SPSLTEDIRSADLVISH--AGAG-----SCLETLRLGKPLIVV 106 (170)
T ss_pred CccHHHHHhhccEEEec--CCcc-----hHHHHHHcCCCEEEE
Confidence 57789999999999861 1133 799999999999886
No 199
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=69.39 E-value=62 Score=31.26 Aligned_cols=130 Identities=16% Similarity=0.076 Sum_probs=77.4
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHH
Q 011969 6 RACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPL 85 (474)
Q Consensus 6 ~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (474)
+++|+..|.+|. ..|..|.++ ||+|.++-.+..............+.+... .+. . ..+.+.
T Consensus 2 ~iiIiG~G~vG~-----~va~~L~~~-g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd--~t~-------~---~~L~~a- 62 (225)
T COG0569 2 KIIIIGAGRVGR-----SVARELSEE-GHNVVLIDRDEERVEEFLADELDTHVVIGD--ATD-------E---DVLEEA- 62 (225)
T ss_pred EEEEECCcHHHH-----HHHHHHHhC-CCceEEEEcCHHHHHHHhhhhcceEEEEec--CCC-------H---HHHHhc-
Confidence 466666665431 346788886 999999986654322111222344444444 111 0 111111
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCc-EEEEecCchhhhhhhccCCCchHHHHHHHHHHHHh
Q 011969 86 IQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSA-FIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYG 164 (474)
Q Consensus 86 ~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 164 (474)
-..+.|++++.........+++.++.+..+.| +|.-.++..+ .+.+.
T Consensus 63 ------------gi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~--------------------~~~~~ 110 (225)
T COG0569 63 ------------GIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARARNPEH--------------------EKVLE 110 (225)
T ss_pred ------------CCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHH--------------------HHHHH
Confidence 23789999987766566777788888877766 4556776622 11111
Q ss_pred h-hcCEEEEeCHHHHHHHHHHhC
Q 011969 165 K-MANGCLCVTQAMQHELAQNWG 186 (474)
Q Consensus 165 ~-~ad~vi~vS~~~~~~l~~~~~ 186 (474)
+ .+|.++.....+..++.+...
T Consensus 111 ~~g~~~ii~Pe~~~~~~l~~~i~ 133 (225)
T COG0569 111 KLGADVIISPEKLAAKRLARLIV 133 (225)
T ss_pred HcCCcEEECHHHHHHHHHHHHhc
Confidence 1 379999999999988887643
No 200
>PLN02342 ornithine carbamoyltransferase
Probab=67.99 E-value=1.4e+02 Score=31.04 Aligned_cols=165 Identities=16% Similarity=0.168 Sum_probs=89.0
Q ss_pred CChhHHHHHHHHHhhCCCcEEE-EecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEE--eCHHHHHHHHHHhCC
Q 011969 111 PSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLC--VTQAMQHELAQNWGI 187 (474)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~-~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~--vS~~~~~~l~~~~~~ 187 (474)
|+.-|-...-.+....|..+++ +..+. +.++.-.+.-. -+.+.+++|.+++ .+....+.+.+....
T Consensus 95 pSTRTR~SFE~A~~~LGg~~i~l~~~~s-------s~~kGESl~DT----arvLs~y~D~IviR~~~~~~~~~la~~~~v 163 (348)
T PLN02342 95 PSMRTRVSFETGFFLLGGHALYLGPDDI-------QLGKREETRDI----ARVLSRYNDIIMARVFAHQDVLDLAEYSSV 163 (348)
T ss_pred CCcchHHHHHHHHHHcCCcEEEeCcccc-------cCCCCcCHHHH----HHHHHHhCCEEEEeCCChHHHHHHHHhCCC
Confidence 3455554455555555555444 22222 23444444332 3445566899884 445666667664344
Q ss_pred ceEEEeCCCCCCCCCCC-hHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEe
Q 011969 188 KATVLYDQPPEFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSST 266 (474)
Q Consensus 188 ~~~vi~n~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G 266 (474)
+ | -|+....+||+. .-+-..+++++|. + .+ ..+.|+|
T Consensus 164 P--V-INA~~~~~HPtQaLaDl~Ti~e~~G~------------------------------------l-~g--lkva~vG 201 (348)
T PLN02342 164 P--V-INGLTDYNHPCQIMADALTIIEHIGR------------------------------------L-EG--TKVVYVG 201 (348)
T ss_pred C--E-EECCCCCCChHHHHHHHHHHHHHhCC------------------------------------c-CC--CEEEEEC
Confidence 3 3 454445678873 2233344444441 1 11 2678888
Q ss_pred ecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHHHHHHHcCCCcE
Q 011969 267 SWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEKIRRLRLKRV 344 (474)
Q Consensus 267 ~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~~~~~~l~l~~V 344 (474)
-.. .=..-++.++..+ ++++.+++.... .+++.+.+++.+..++
T Consensus 202 D~~--nva~Sli~~~~~~--------------------------------G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~ 247 (348)
T PLN02342 202 DGN--NIVHSWLLLAAVL--------------------------------PFHFVCACPKGYEPDAKTVEKARAAGISKI 247 (348)
T ss_pred CCc--hhHHHHHHHHHHc--------------------------------CCEEEEECCcccccCHHHHHHHHHhCCCcE
Confidence 753 2333444444432 478999995432 2344455555553244
Q ss_pred EEecCCCCcccHHHHHhcccEEEe
Q 011969 345 AFRTMWLSAEDYPLLLGSADLGVC 368 (474)
Q Consensus 345 ~f~g~~v~~~~~~~~l~~adv~v~ 368 (474)
.+ ..++.+.+..||++..
T Consensus 248 ~~------~~d~~eav~~aDVvy~ 265 (348)
T PLN02342 248 EI------TNDPAEAVKGADVVYT 265 (348)
T ss_pred EE------EcCHHHHhCCCCEEEE
Confidence 43 3778899999999998
No 201
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=67.79 E-value=1.5e+02 Score=30.21 Aligned_cols=137 Identities=9% Similarity=0.045 Sum_probs=71.6
Q ss_pred EEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChH--HHHHH----
Q 011969 262 VVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKE--SYEEK---- 335 (474)
Q Consensus 262 i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~--~~~~~---- 335 (474)
=.|+|+++-.||+...++.-.+..+ .++++-++-|-....+ .+.+.
T Consensus 186 ~~yigR~Tt~kG~~~mfD~h~~~lK----------------------------~~~~~t~~~GierS~A~~~i~d~~~~~ 237 (355)
T PF11440_consen 186 NRYIGRQTTWKGPRRMFDLHEKILK----------------------------PAGFKTIMEGIERSPAKISIKDHGIPY 237 (355)
T ss_dssp EEEE--SSGGG-HHHHHHHHHHTTT----------------------------TTT-EEEEE---SSTHHHHHHHTT--E
T ss_pred ceeeeeeeeecCcHHHhhhHHHhcC----------------------------CcchhHHhhhhhcCCceeeeecCCccc
Confidence 3799999999999999998887654 5788889988332211 11111
Q ss_pred -------HHHcCC---CcEEEecCCCCcccHHHHHhcccEEEeeccCC--CC-CCCchHHHHHHhcCC-cEEEecccccc
Q 011969 336 -------IRRLRL---KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS--SG-LDLPMKVVDMFGCGL-PVCAVSYSCIE 401 (474)
Q Consensus 336 -------~~~l~l---~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s--~~-e~~p~kv~Eama~G~-PVia~~~~~~~ 401 (474)
+.+..+ .-+...|.++ .++....++.+-.++.+.... .. +.+-..-+|..|||. ||.-...|...
T Consensus 238 ~y~~~~~~~~~~~~pN~~~~v~~~Yi-~~E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN~ 316 (355)
T PF11440_consen 238 EYYPKLDCDEPKPAPNSPVPVYGPYI-RSEGLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGENN 316 (355)
T ss_dssp EEE-CTGGGG---SSS--EEEESS---HHHHHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHHS
T ss_pred ccCccccccCcccCCCCcceecchhh-hHHHHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeeccccccc
Confidence 001111 1377888844 678888899988887752222 22 336678999999996 55544444333
Q ss_pred c-------ccccCCcEEEeC---CHHHHHHHHHHHHh
Q 011969 402 E-------LVKVDKNGLLFS---SSSELADQLLMLFK 428 (474)
Q Consensus 402 e-------~v~~~~~G~l~~---~~~~la~~i~~l~~ 428 (474)
. ++.++ .|.+.. |.++-.+.|.++.+
T Consensus 317 r~~~D~~~~~~~~-~~~I~~De~dle~T~ekl~E~a~ 352 (355)
T PF11440_consen 317 RFTLDGTRYIDHP-YSAIYFDENDLESTVEKLIEVAN 352 (355)
T ss_dssp B-TTTSSBGGSS---S-EEE-TTSHHHHHHHHHHHHT
T ss_pred eeeecCceeeccC-cceeEeccchHHHHHHHHHHHhc
Confidence 2 33333 344443 45555555555544
No 202
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=66.03 E-value=57 Score=32.47 Aligned_cols=154 Identities=16% Similarity=0.152 Sum_probs=89.4
Q ss_pred CCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHH
Q 011969 256 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYE 333 (474)
Q Consensus 256 ~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~ 333 (474)
.+.|+++..--+.....|++.+++.++.. .+.=+|+-+-|. .+++.
T Consensus 86 ~~~pivlm~Y~N~i~~~G~e~F~~~~~~a--------------------------------GvdGlIipDLP~ee~~~~~ 133 (259)
T PF00290_consen 86 PDIPIVLMTYYNPIFQYGIERFFKEAKEA--------------------------------GVDGLIIPDLPPEESEELR 133 (259)
T ss_dssp TSSEEEEEE-HHHHHHH-HHHHHHHHHHH--------------------------------TEEEEEETTSBGGGHHHHH
T ss_pred CCCCEEEEeeccHHhccchHHHHHHHHHc--------------------------------CCCEEEEcCCChHHHHHHH
Confidence 55664444334444566877777776653 355566665543 46788
Q ss_pred HHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCC--CC--CCCchHHHHHHh-----cCCcEEEec---c-ccc
Q 011969 334 EKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS--SG--LDLPMKVVDMFG-----CGLPVCAVS---Y-SCI 400 (474)
Q Consensus 334 ~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s--~~--e~~p~kv~Eama-----~G~PVia~~---~-~~~ 400 (474)
+.+++.|++.|.|...-.+.+.+..+.+.++=||...... .| ..++..+-+... +.+||++-- . ...
T Consensus 134 ~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~ 213 (259)
T PF00290_consen 134 EAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQA 213 (259)
T ss_dssp HHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHH
T ss_pred HHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHH
Confidence 8899999999999987567888888888888777752111 23 335555555443 479998752 2 223
Q ss_pred ccccccCCcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 011969 401 EELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 447 (474)
Q Consensus 401 ~e~v~~~~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 447 (474)
.++. .+..|+++.+ ++.+.+.+-.++ ..+..+++.+.++++
T Consensus 214 ~~~~-~~aDGvIVGS--a~v~~i~~~~~~---~~~~~~~~~~~~~~l 254 (259)
T PF00290_consen 214 KKLA-AGADGVIVGS--AFVKIIEENGDD---AEKFLKELKEFVREL 254 (259)
T ss_dssp HHHH-TTSSEEEESH--HHHHHHHHTCCH---HHHHHHHHHHHHHHH
T ss_pred HHHH-ccCCEEEECH--HHHHHHHHcccc---HHHHHHHHHHHHHHH
Confidence 3333 7889999986 345555542211 233455555555553
No 203
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=65.13 E-value=39 Score=31.73 Aligned_cols=76 Identities=13% Similarity=0.129 Sum_probs=37.2
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEE-EecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (474)
.+||+++....-..|.++ ..++.+++|+++ ..+-... +.... +.+..+.+.+.+..|.|++.|+..+
T Consensus 94 ~~P~~~i~~EtElWPnll---~~a~~~~ip~~LvNarls~~-----s~~~~----~~~~~~~r~~l~~f~~i~aqs~~da 161 (186)
T PF04413_consen 94 WRPDLLIWVETELWPNLL---REAKRRGIPVVLVNARLSER-----SFRRY----RRFPFLFRPLLSRFDRILAQSEADA 161 (186)
T ss_dssp H--SEEEEES----HHHH---HH-----S-EEEEEE-----------------------HHHHHHGGG-SEEEESSHHHH
T ss_pred hCCCEEEEEccccCHHHH---HHHhhcCCCEEEEeeeeccc-----cchhh----hhhHHHHHHHHHhCCEEEECCHHHH
Confidence 679999998866666653 334456788654 4333211 11111 1224567778889999999999999
Q ss_pred HHHHHHhCCc
Q 011969 179 HELAQNWGIK 188 (474)
Q Consensus 179 ~~l~~~~~~~ 188 (474)
+.+.+. |.+
T Consensus 162 ~r~~~l-G~~ 170 (186)
T PF04413_consen 162 ERFRKL-GAP 170 (186)
T ss_dssp HHHHTT-T-S
T ss_pred HHHHHc-CCC
Confidence 999884 665
No 204
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.55 E-value=1.5e+02 Score=33.32 Aligned_cols=123 Identities=20% Similarity=0.240 Sum_probs=81.7
Q ss_pred CCCEEEEEEeCC-CChHHHHHHHHHcCC--CcEEEecCCCCcccHHHHHhcccEEEeeccCC-CCCCCchHHHHHHhcCC
Q 011969 315 YPRLLFIITGKG-PDKESYEEKIRRLRL--KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGL 390 (474)
Q Consensus 315 ~~~~~l~ivG~g-~~~~~~~~~~~~l~l--~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s-~~e~~p~kv~Eama~G~ 390 (474)
.|+-.|++.-.. --++.++..+.++|+ ++|.|..- ...+|=..-.+-+|+++- +|- .|..-| .|.+.+|+
T Consensus 786 VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~v-a~k~eHvrr~~LaDv~LD--TplcnGhTTg---~dvLw~Gv 859 (966)
T KOG4626|consen 786 VPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPV-AAKEEHVRRGQLADVCLD--TPLCNGHTTG---MDVLWAGV 859 (966)
T ss_pred CCcceeEEEeccccchHHHHHHHHHhCCCccceeeccc-cchHHHHHhhhhhhhccc--CcCcCCcccc---hhhhccCC
Confidence 687777665432 123678999999999 69999976 566777777888999886 122 444333 68889999
Q ss_pred cEEEeccccccc-----ccccCCcEEEe-CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 011969 391 PVCAVSYSCIEE-----LVKVDKNGLLF-SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 447 (474)
Q Consensus 391 PVia~~~~~~~e-----~v~~~~~G~l~-~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 447 (474)
|+|+-.....+. .+..-+.|-++ .+-++..+.-.+|-. |.+.++++|...++.
T Consensus 860 PmVTmpge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~Lat----d~~~L~~lr~~l~~~ 918 (966)
T KOG4626|consen 860 PMVTMPGETLASRVAASLLTALGLGHLIAKNREEYVQIAVRLAT----DKEYLKKLRAKLRKA 918 (966)
T ss_pred ceeecccHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHHHhhc----CHHHHHHHHHHHHHH
Confidence 999865322221 12122333333 477888887777766 477888888877653
No 205
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=63.41 E-value=38 Score=33.61 Aligned_cols=90 Identities=23% Similarity=0.214 Sum_probs=61.7
Q ss_pred CChHHHHHHHHHcCC--Cc-EEEecCCCCcccHHHHHhc--ccEEEeeccCCCCC--CCchHHHHHHhcCCcEEEecccc
Q 011969 327 PDKESYEEKIRRLRL--KR-VAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGL--DLPMKVVDMFGCGLPVCAVSYSC 399 (474)
Q Consensus 327 ~~~~~~~~~~~~l~l--~~-V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e--~~p~kv~Eama~G~PVia~~~~~ 399 (474)
|..+.++ .+.++|+ ++ |...|. .+.+.=..++++ +|++|. ..+|. ++.-|+--|..+|+|||..+-+.
T Consensus 159 P~~~~l~-~~~~~G~~~~~iia~~gP-fs~e~n~al~~~~~i~~lVt---K~SG~~Gg~~eKi~AA~~lgi~vivI~RP~ 233 (256)
T TIGR00715 159 PYPQALA-QALKLGFPSDRIIAMRGP-FSEELEKALLREYRIDAVVT---KASGEQGGELEKVKAAEALGINVIRIARPQ 233 (256)
T ss_pred CCchhhH-HHHHcCCChhcEEEEeCC-CCHHHHHHHHHHcCCCEEEE---cCCCCccchHHHHHHHHHcCCcEEEEeCCC
Confidence 4444444 7888888 34 555566 777777777876 555555 45543 67889999999999999987664
Q ss_pred cccccccCCcEEEeCCHHHHHHHHHHHH
Q 011969 400 IEELVKVDKNGLLFSSSSELADQLLMLF 427 (474)
Q Consensus 400 ~~e~v~~~~~G~l~~~~~~la~~i~~l~ 427 (474)
... .+-.+.+.+++.+.+.+++
T Consensus 234 ~~~------~~~~~~~~~el~~~l~~~~ 255 (256)
T TIGR00715 234 TIP------GVAIFDDISQLNQFVARLL 255 (256)
T ss_pred CCC------CCccCCCHHHHHHHHHHhc
Confidence 321 1245578888888877653
No 206
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=62.30 E-value=37 Score=33.52 Aligned_cols=85 Identities=18% Similarity=0.123 Sum_probs=51.0
Q ss_pred CCEEEEEEe--CCCCh---HHHHHHHHHcCCCcEEEecCC----CCcccHHHHHhcccEEEeeccCC-------CCCCCc
Q 011969 316 PRLLFIITG--KGPDK---ESYEEKIRRLRLKRVAFRTMW----LSAEDYPLLLGSADLGVCLHTSS-------SGLDLP 379 (474)
Q Consensus 316 ~~~~l~ivG--~g~~~---~~~~~~~~~l~l~~V~f~g~~----v~~~~~~~~l~~adv~v~~~~~s-------~~e~~p 379 (474)
++.+++++. .++.. +.+.+..+++|.+.|..+... -+.++....+..||+.++---.. .+-++-
T Consensus 27 ~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~~l~~~l~~t~l~ 106 (250)
T TIGR02069 27 EDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQLRITSLLGDTPLL 106 (250)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHHHHHHHHcCCcHH
Confidence 334555554 33322 456666778888666655420 12345778899999999821000 111233
Q ss_pred hHHHHHHhcCCcEEEeccccc
Q 011969 380 MKVVDMFGCGLPVCAVSYSCI 400 (474)
Q Consensus 380 ~kv~Eama~G~PVia~~~~~~ 400 (474)
..+-++...|+|++.++.|.+
T Consensus 107 ~~l~~~~~~G~vi~G~SAGA~ 127 (250)
T TIGR02069 107 DRLRKRVHEGIILGGTSAGAA 127 (250)
T ss_pred HHHHHHHHcCCeEEEccHHHH
Confidence 457789999999999876543
No 207
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=61.64 E-value=95 Score=33.06 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=59.8
Q ss_pred CCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCC----------------CCcccHHHHHhcccEEEeeccCCCCCCCc
Q 011969 316 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW----------------LSAEDYPLLLGSADLGVCLHTSSSGLDLP 379 (474)
Q Consensus 316 ~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~----------------v~~~~~~~~l~~adv~v~~~~~s~~e~~p 379 (474)
.+-+++++|.|.....+-......|..+|.+...- ++.+++...+..||+.+... +..+ |
T Consensus 180 ~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT--~a~~--~ 255 (414)
T PRK13940 180 SSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAV--NVLE--Y 255 (414)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECc--CCCC--e
Confidence 45689999988765555555555555555554431 23466778889999999841 1221 1
Q ss_pred hHHHHHHhcCCcEEEeccccccccccc--CCcEEEeCCHHHHHHHHH
Q 011969 380 MKVVDMFGCGLPVCAVSYSCIEELVKV--DKNGLLFSSSSELADQLL 424 (474)
Q Consensus 380 ~kv~Eama~G~PVia~~~~~~~e~v~~--~~~G~l~~~~~~la~~i~ 424 (474)
..- ..+.-+.|.+..|.+-.+++-.. .-.|+..=|.|+|.+...
T Consensus 256 vi~-~~~~~~~~~~~iDLavPRdidp~v~~l~~v~l~~iDdl~~i~~ 301 (414)
T PRK13940 256 IVT-CKYVGDKPRVFIDISIPQALDPKLGELEQNVYYCVDDINAVIE 301 (414)
T ss_pred eEC-HHHhCCCCeEEEEeCCCCCCCccccCcCCeEEEeHHHHHHHHH
Confidence 111 23345789999998776664211 112444435555555444
No 208
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=60.81 E-value=1.2e+02 Score=30.05 Aligned_cols=140 Identities=22% Similarity=0.245 Sum_probs=74.0
Q ss_pred EEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChH-HHHHHHHHc
Q 011969 261 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKE-SYEEKIRRL 339 (474)
Q Consensus 261 ~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~-~~~~~~~~l 339 (474)
.++.++.=.+.++++.++++++.- ...+.+-..|.|.... ......++.
T Consensus 80 ~vl~v~~dsp~~t~~eli~~ak~~------------------------------p~~~~~g~~g~g~~~hl~~~~l~~~~ 129 (274)
T PF03401_consen 80 NVLVVRADSPYKTLEELIEYAKAN------------------------------PGKLTFGSSGPGSSDHLAAALLAKAA 129 (274)
T ss_dssp EEEEEETTSS-SSHHHHHHHHHCS------------------------------CCC-EEEESSTTSHHHHHHHHHHHHH
T ss_pred eEEEEeCCCccccHHHHHHHHHhC------------------------------CCCeEEEecCCCchHHHHHHHHHHHh
Confidence 567777778889999999998862 2335555555554322 234456677
Q ss_pred CC--CcEEEecCCCCcccHHHHHhc-ccEEEeeccCCCCCCCchHHHHHHhcCC--cEEEec---c------cccccc--
Q 011969 340 RL--KRVAFRTMWLSAEDYPLLLGS-ADLGVCLHTSSSGLDLPMKVVDMFGCGL--PVCAVS---Y------SCIEEL-- 403 (474)
Q Consensus 340 ~l--~~V~f~g~~v~~~~~~~~l~~-adv~v~~~~~s~~e~~p~kv~Eama~G~--PVia~~---~------~~~~e~-- 403 (474)
|+ ..|-|.|. .+-+..++.. .|+.+.. +.....+...|. |+.+.. . +.+.|.
T Consensus 130 G~~~~~Vpy~G~---~~~~~allgG~vd~~~~~---------~~~~~~~~~~G~~k~Lav~~~~r~~~~pdvPT~~E~G~ 197 (274)
T PF03401_consen 130 GIKFTHVPYDGG---AEALTALLGGHVDAAFGS---------PGEALPYVEAGDLKPLAVFSDERSPALPDVPTFKEQGY 197 (274)
T ss_dssp T---EEEE-SSH---HHHHHHHHTTSSSEEEEE---------HHHHHHHHHTTSEEEEEECSSS-BTTCTTS-BTTTTT-
T ss_pred CCceEEEEeCCc---cHHHHHHhCCeeeEEeec---------HHHHHHHHhCCCceEEEEecCccccccCCCCCHHHhCc
Confidence 77 46777666 5666666654 6777762 223455555552 333322 1 222221
Q ss_pred ---cccCCcEEEeC--CHH----HHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011969 404 ---VKVDKNGLLFS--SSS----ELADQLLMLFKGFPDDSDVLKKLRNGTLE 446 (474)
Q Consensus 404 ---v~~~~~G~l~~--~~~----~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 446 (474)
.-..-.|+..+ .++ .|.+++.+.++ +++..+.+.+.+..
T Consensus 198 ~d~~~~~~~g~~~p~gtp~~~~~~l~~a~~~~~~----~pe~~~~~~~~g~~ 245 (274)
T PF03401_consen 198 PDIVFGSWRGLFAPKGTPDEIVDKLADAIKKALE----DPEFQEFLEKMGLE 245 (274)
T ss_dssp TTG--EEEEEEEEETTS-HHHHHHHHHHHHHHHT-----HHHHHHHHHHTEE
T ss_pred cceeeeeeeeeecCCCCCHHHHHHHHHHHHHHhC----CHHHHHHHHHCCCc
Confidence 11222466654 344 55555555555 47777777666654
No 209
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=56.68 E-value=1.3e+02 Score=32.06 Aligned_cols=106 Identities=17% Similarity=0.135 Sum_probs=69.1
Q ss_pred cCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHH
Q 011969 254 LKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 333 (474)
Q Consensus 254 ~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~ 333 (474)
.++..|.+.++..+.++-.-..-|++++.. + +|++.++++-..+.- .+
T Consensus 45 ~~~~~p~vWiHaaSVGEv~a~~pLv~~l~~---~---------------------------~P~~~ilvTt~T~Tg--~e 92 (419)
T COG1519 45 VKPEGPLVWIHAASVGEVLAALPLVRALRE---R---------------------------FPDLRILVTTMTPTG--AE 92 (419)
T ss_pred CCCCCCeEEEEecchhHHHHHHHHHHHHHH---h---------------------------CCCCCEEEEecCccH--HH
Confidence 346677788888888876665555555544 2 789999888755443 23
Q ss_pred HHHHHcCCC-cEEEecCCCCcccHHHHH--hcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec
Q 011969 334 EKIRRLRLK-RVAFRTMWLSAEDYPLLL--GSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 334 ~~~~~l~l~-~V~f~g~~v~~~~~~~~l--~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~ 396 (474)
...+.++-. .+.+++. =..--+..++ -.-|++|+ ...|-+|+.+.|+-..|+|++-.+
T Consensus 93 ~a~~~~~~~v~h~YlP~-D~~~~v~rFl~~~~P~l~Ii----~EtElWPnli~e~~~~~~p~~LvN 153 (419)
T COG1519 93 RAAALFGDSVIHQYLPL-DLPIAVRRFLRKWRPKLLII----METELWPNLINELKRRGIPLVLVN 153 (419)
T ss_pred HHHHHcCCCeEEEecCc-CchHHHHHHHHhcCCCEEEE----EeccccHHHHHHHHHcCCCEEEEe
Confidence 344445532 3444432 0111233333 34688887 577889999999999999999876
No 210
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=55.35 E-value=2.3e+02 Score=32.53 Aligned_cols=145 Identities=10% Similarity=0.038 Sum_probs=95.2
Q ss_pred CCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hH---HH
Q 011969 258 RPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KE---SY 332 (474)
Q Consensus 258 ~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~---~~ 332 (474)
...+++-+-++...||...=+.++.++.++ + +.-.+.+.++.+..+.. .+ ++
T Consensus 275 g~klilgvD~~d~~kg~~~Kl~a~e~~L~~---------------~--------pe~~~kVvliqi~~~~~~~~~~v~~~ 331 (732)
T KOG1050|consen 275 GKKLILGVDRLDSIKGIQLKLLAFEQFLEE---------------Y--------PEWIDKVVLIQIENPKRTDGKEVEEL 331 (732)
T ss_pred CCceEecccccccccCchHHHHHHHHHHHh---------------C--------hhhhceEEEEEEecCCcccchHHHHH
Confidence 334777777888889987777777776653 1 11124455555543321 11 11
Q ss_pred HH----HHHH----cCC---CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcC----CcEEEecc
Q 011969 333 EE----KIRR----LRL---KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG----LPVCAVSY 397 (474)
Q Consensus 333 ~~----~~~~----l~l---~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G----~PVia~~~ 397 (474)
+. .+++ .+- ..|+++-..++..++-+++.-+|+++. .+.++|..++.+|+..|. .+.|.+.+
T Consensus 332 k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~~~Vaev~~v---~s~rdGmnl~~~e~i~~~~~~~~~lVlsef 408 (732)
T KOG1050|consen 332 KFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLALYKVAEVCPV---TSWRDGMNLVFLEYILCQENKKSVLVLSEF 408 (732)
T ss_pred HHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhhHHhhhheee---cccccccchhhhHHHHhhcccCCceEEeee
Confidence 21 1221 121 235555444899999999999999999 788888999999999885 67788877
Q ss_pred cccccccccCCcEEEeC-CHHHHHHHHHHHHhC
Q 011969 398 SCIEELVKVDKNGLLFS-SSSELADQLLMLFKG 429 (474)
Q Consensus 398 ~~~~e~v~~~~~G~l~~-~~~~la~~i~~l~~~ 429 (474)
.|..+.++++. =.+.+ +.++++..|...++.
T Consensus 409 ~G~~~tl~d~a-ivvnpw~~~~~~~~i~~al~~ 440 (732)
T KOG1050|consen 409 IGDDTTLEDAA-IVVNPWDGDEFAILISKALTM 440 (732)
T ss_pred ccccccccccC-EEECCcchHHHHHHHHHHhhc
Confidence 77777653332 12223 689999999999986
No 211
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=55.24 E-value=2e+02 Score=27.98 Aligned_cols=109 Identities=11% Similarity=-0.003 Sum_probs=54.5
Q ss_pred CCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHH-----------------HHHhcccEEEeeccCCCCCCC
Q 011969 316 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYP-----------------LLLGSADLGVCLHTSSSGLDL 378 (474)
Q Consensus 316 ~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~-----------------~~l~~adv~v~~~~~s~~e~~ 378 (474)
.+.+++++|+|.-...=-+...+.| .+|+....-+ .+++. ..+..+++++. .+....+
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap~i-~~el~~l~~~~~i~~~~r~~~~~dl~g~~LVia---ATdD~~v 98 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKG-CYVYILSKKF-SKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVI---ATDDEKL 98 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCC-CHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEE---CCCCHHH
Confidence 4567999998864321111111122 3666665422 22332 23456666666 3333223
Q ss_pred chHHH-HHHhcCCcEEEecccccccc-----cccCCcEEEeC----C---HHHHHHHHHHHHhC
Q 011969 379 PMKVV-DMFGCGLPVCAVSYSCIEEL-----VKVDKNGLLFS----S---SSELADQLLMLFKG 429 (474)
Q Consensus 379 p~kv~-Eama~G~PVia~~~~~~~e~-----v~~~~~G~l~~----~---~~~la~~i~~l~~~ 429 (474)
-..+. +|-+.|.+|.+++.+...++ +..+.--+-++ + ...+.+.|+.++..
T Consensus 99 N~~I~~~a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie~~l~~ 162 (223)
T PRK05562 99 NNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVKNFLKK 162 (223)
T ss_pred HHHHHHHHHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHHHHHHH
Confidence 33444 44567999998875544444 33333222222 2 44666666666643
No 212
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=54.12 E-value=84 Score=32.13 Aligned_cols=115 Identities=18% Similarity=0.177 Sum_probs=61.5
Q ss_pred CceEEEEEeCCCCC---CchHHHHHHHHHhhCCCeEEEEecCCCCCCc------------ceeccCCeEEEEeecCCCCC
Q 011969 4 RGRACVVVLGDLGR---SPRMQYQALSLARQMSLEVDVVAYGGSKPHA------------AILEHPSIHIHTMTQWPTIP 68 (474)
Q Consensus 4 ~~~~~i~~~~~~g~---~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~------------~~~~~~gi~i~~~~~~~~~~ 68 (474)
.++..++..-..+| |.-.......|.++ ||.|-|++-+.+.|.. ....++|+-+..+++.-
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~-G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG--- 123 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRER-GHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRG--- 123 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHC-CcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCc---
Confidence 34445555544444 44455566778886 9999999966544322 33447889888888211
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCch
Q 011969 69 RGLPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFG 138 (474)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~ 138 (474)
.+..+.....-.... | ...-+|+|++-+...-.+-+ -....-.+-+++...+.+
T Consensus 124 -~lGGlS~at~~~i~~-----------l-dAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~G 177 (323)
T COG1703 124 -TLGGLSRATREAIKL-----------L-DAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAG 177 (323)
T ss_pred -cchhhhHHHHHHHHH-----------H-HhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCC
Confidence 111222221222122 2 23789999997643222221 112333455666677664
No 213
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=53.54 E-value=2.3e+02 Score=27.93 Aligned_cols=126 Identities=9% Similarity=0.109 Sum_probs=75.8
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHHH
Q 011969 257 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEE 334 (474)
Q Consensus 257 ~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~~ 334 (474)
+-|++++..-+.....|++.+++.++.. .+.-+|+=+-|. ..++.+
T Consensus 87 ~~plv~m~Y~Npi~~~G~e~f~~~~~~a--------------------------------GvdgviipDlp~ee~~~~~~ 134 (256)
T TIGR00262 87 NIPIGLLTYYNLIFRKGVEEFYAKCKEV--------------------------------GVDGVLVADLPLEESGDLVE 134 (256)
T ss_pred CCCEEEEEeccHHhhhhHHHHHHHHHHc--------------------------------CCCEEEECCCChHHHHHHHH
Confidence 4464544444555567888888777763 233444444443 356777
Q ss_pred HHHHcCCCcEEEecCCCCcccHHHHHhccc--EEEeeccCCCCC--CCchHHHHHHh-----cCCcEEEeccc-----cc
Q 011969 335 KIRRLRLKRVAFRTMWLSAEDYPLLLGSAD--LGVCLHTSSSGL--DLPMKVVDMFG-----CGLPVCAVSYS-----CI 400 (474)
Q Consensus 335 ~~~~l~l~~V~f~g~~v~~~~~~~~l~~ad--v~v~~~~~s~~e--~~p~kv~Eama-----~G~PVia~~~~-----~~ 400 (474)
.++++|++.+.+...--+.+.+..+.+.++ ++++......|. .++..+.|.+. .++||++ +.| .+
T Consensus 135 ~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~v-gfGI~~~e~~ 213 (256)
T TIGR00262 135 AAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLV-GFGISKPEQV 213 (256)
T ss_pred HHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEE-eCCCCCHHHH
Confidence 889999987877766345678889999999 444422211332 24444555543 5788776 322 23
Q ss_pred ccccccCCcEEEeCC
Q 011969 401 EELVKVDKNGLLFSS 415 (474)
Q Consensus 401 ~e~v~~~~~G~l~~~ 415 (474)
.++...|..|+++.+
T Consensus 214 ~~~~~~GADgvVvGS 228 (256)
T TIGR00262 214 KQAIDAGADGVIVGS 228 (256)
T ss_pred HHHHHcCCCEEEECH
Confidence 344545578888876
No 214
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=52.86 E-value=96 Score=26.86 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccc--cC
Q 011969 330 ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVK--VD 407 (474)
Q Consensus 330 ~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~--~~ 407 (474)
++..+.+++ +. .|.+... .+.+++...+..+|+++. .+.. .+.-.+++++ -++-+|++...|...+-. -.
T Consensus 9 ~~~~~~l~~-~~-~v~~~~~-~~~~~~~~~l~~~d~ii~---~~~~-~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~a~ 80 (133)
T PF00389_consen 9 DEEIERLEE-GF-EVEFCDS-PSEEELAERLKDADAIIV---GSGT-PLTAEVLEAA-PNLKLISTAGAGVDNIDLEAAK 80 (133)
T ss_dssp HHHHHHHHH-TS-EEEEESS-SSHHHHHHHHTTESEEEE---STTS-TBSHHHHHHH-TT-SEEEESSSSCTTB-HHHHH
T ss_pred HHHHHHHHC-Cc-eEEEeCC-CCHHHHHHHhCCCeEEEE---cCCC-CcCHHHHhcc-ceeEEEEEcccccCcccHHHHh
Confidence 344555566 66 7888887 889999999999999998 2222 4677899988 889999988777654311 12
Q ss_pred CcEEEeC-----CHHHHHHHH
Q 011969 408 KNGLLFS-----SSSELADQL 423 (474)
Q Consensus 408 ~~G~l~~-----~~~~la~~i 423 (474)
+.|+.+. +.++.|+..
T Consensus 81 ~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 81 ERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HTTSEEEE-TTTTHHHHHHHH
T ss_pred hCeEEEEEeCCcCCcchhccc
Confidence 4556653 244555544
No 215
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=52.26 E-value=2.3e+02 Score=27.47 Aligned_cols=88 Identities=11% Similarity=0.222 Sum_probs=48.8
Q ss_pred CCCEEEEEEeCCCC--hHHHH----HHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHh-
Q 011969 315 YPRLLFIITGKGPD--KESYE----EKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFG- 387 (474)
Q Consensus 315 ~~~~~l~ivG~g~~--~~~~~----~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama- 387 (474)
.+++.+.++|.|.. .+.++ +..++.. .|+.++ ..|.....=|.+.-|.++
T Consensus 29 Redi~vrVvgsgaKM~Pe~veaav~~~~e~~~----------------------pDfvi~-isPNpaaPGP~kARE~l~~ 85 (277)
T COG1927 29 REDIEVRVVGSGAKMDPECVEAAVTEMLEEFN----------------------PDFVIY-ISPNPAAPGPKKAREILSD 85 (277)
T ss_pred cCCceEEEeccccccChHHHHHHHHHHHHhcC----------------------CCEEEE-eCCCCCCCCchHHHHHHhh
Confidence 47899999998842 22222 3333333 234333 112333334678888887
Q ss_pred cCCcEEEe-ccccc--ccccccCCcEEEeCCHHHHHHHHHH
Q 011969 388 CGLPVCAV-SYSCI--EELVKVDKNGLLFSSSSELADQLLM 425 (474)
Q Consensus 388 ~G~PVia~-~~~~~--~e~v~~~~~G~l~~~~~~la~~i~~ 425 (474)
+|.|.|.. |.++. .+-+++.+-|++.-..|.+.-+=++
T Consensus 86 s~~PaiiigDaPg~~vkdeleeqGlGYIivk~DpmiGArRE 126 (277)
T COG1927 86 SDVPAIIIGDAPGLKVKDELEEQGLGYIIVKADPMIGARRE 126 (277)
T ss_pred cCCCEEEecCCccchhHHHHHhcCCeEEEecCCcccchhhh
Confidence 78888775 34433 3556667788887443333333333
No 216
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=52.26 E-value=14 Score=32.23 Aligned_cols=75 Identities=16% Similarity=0.133 Sum_probs=43.0
Q ss_pred EEEEEeC-CCChHHHHHHHHHcCCCcEEEecCCCC------------------------cccHHHHHhcccEEEeeccCC
Q 011969 319 LFIITGK-GPDKESYEEKIRRLRLKRVAFRTMWLS------------------------AEDYPLLLGSADLGVCLHTSS 373 (474)
Q Consensus 319 ~l~ivG~-g~~~~~~~~~~~~l~l~~V~f~g~~v~------------------------~~~~~~~l~~adv~v~~~~~s 373 (474)
++.|+|. |..-..+.+.+.+.. .+.+.+. ++ ..++..++..+|+.+-. |
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~--~~~lv~~-v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDf---T 75 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESP--GFELVGA-VDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDF---T 75 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHST--TEEEEEE-EETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEE---S
T ss_pred EEEEECCCCHHHHHHHHHHHhcC--CcEEEEE-EecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEc---C
Confidence 5677776 655555555555532 3444333 21 25689999999999984 3
Q ss_pred CCCCCchHHHHHHhcCCcEEEecccc
Q 011969 374 SGLDLPMKVVDMFGCGLPVCAVSYSC 399 (474)
Q Consensus 374 ~~e~~p~kv~Eama~G~PVia~~~~~ 399 (474)
..+..-.-+-.+..+|+|+|.-..|.
T Consensus 76 ~p~~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 76 NPDAVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEE-SSS
T ss_pred ChHHhHHHHHHHHhCCCCEEEECCCC
Confidence 33333345666788899999865443
No 217
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=51.70 E-value=60 Score=28.99 Aligned_cols=69 Identities=13% Similarity=0.091 Sum_probs=41.3
Q ss_pred cHHHHHhcccEEEeeccCCCCCCC-----chHHHHHHhcCCcEEEecccccccccccC--CcEEEeCCHHHHHHHHHHHH
Q 011969 355 DYPLLLGSADLGVCLHTSSSGLDL-----PMKVVDMFGCGLPVCAVSYSCIEELVKVD--KNGLLFSSSSELADQLLMLF 427 (474)
Q Consensus 355 ~~~~~l~~adv~v~~~~~s~~e~~-----p~kv~Eama~G~PVia~~~~~~~e~v~~~--~~G~l~~~~~~la~~i~~l~ 427 (474)
.-..++..||++|.. .|+-+ .+-.-=|.|+|+|.|.-.-....--+++- ..-..+.+++...+.|..++
T Consensus 65 RT~~li~~aDvVVvr----FGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~HpLKEvda~A~a~~et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 65 RTRTLIEKADVVVVR----FGEKYKQWNAAFDAGYAAALGKPLITLHPEELHHPLKEVDAAALAVAETPEQVVEILRYVL 140 (141)
T ss_pred HHHHHHhhCCEEEEE----echHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHhhHhhhCCHHHHHHHHHHHh
Confidence 346789999999984 33322 11233467999999997654443333322 22233457777777776654
No 218
>PRK10494 hypothetical protein; Provisional
Probab=51.00 E-value=64 Score=31.99 Aligned_cols=80 Identities=18% Similarity=0.146 Sum_probs=50.0
Q ss_pred CCCEEEEEEeCCC------ChHHHHHHHHHcCCC--cEEEecCCC----CcccHHHHHhcccEEEeeccCCCCCCCchHH
Q 011969 315 YPRLLFIITGKGP------DKESYEEKIRRLRLK--RVAFRTMWL----SAEDYPLLLGSADLGVCLHTSSSGLDLPMKV 382 (474)
Q Consensus 315 ~~~~~l~ivG~g~------~~~~~~~~~~~l~l~--~V~f~g~~v----~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv 382 (474)
.+..++++.|+.. +.+-+++.+.++|++ ++...+.-. +......++....+.++ +| ...++..+
T Consensus 119 ~~~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~Ii~e~~s~nT~eNa~~~~~~~~~~~iiLV---Ts-a~Hm~RA~ 194 (259)
T PRK10494 119 NPGAKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDIITLDLPKDTEEEAAAVKQAIGDAPFLLV---TS-ASHLPRAM 194 (259)
T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHeeeCCCCCCHHHHHHHHHHHhCCCCEEEE---CC-HHHHHHHH
Confidence 5778999999532 234567777889983 566644311 12233444444456666 33 33378888
Q ss_pred HHHHhcCCcEEEeccc
Q 011969 383 VDMFGCGLPVCAVSYS 398 (474)
Q Consensus 383 ~Eama~G~PVia~~~~ 398 (474)
..+-..|+.|+....+
T Consensus 195 ~~f~~~Gl~v~p~Ptd 210 (259)
T PRK10494 195 IFFQQEGLNPLPAPAN 210 (259)
T ss_pred HHHHHcCCceeecCCc
Confidence 8888899999976543
No 219
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=50.68 E-value=2.9e+02 Score=28.10 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=46.7
Q ss_pred EEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHHHHHHH
Q 011969 261 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEKIRR 338 (474)
Q Consensus 261 ~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~~~~~~ 338 (474)
.+.|+|-..+.+=..-++.++..+ .+.+.+++.... .+++.+.+++
T Consensus 152 ~va~vGD~~~~~v~~Sl~~~~a~~--------------------------------g~~v~~~~P~~~~~~~~~~~~~~~ 199 (301)
T TIGR00670 152 KIALVGDLKYGRTVHSLAEALTRF--------------------------------GVEVYLISPEELRMPKEILEELKA 199 (301)
T ss_pred EEEEEccCCCCcHHHHHHHHHHHc--------------------------------CCEEEEECCccccCCHHHHHHHHH
Confidence 788999766555566667776653 478988885432 2445555665
Q ss_pred cCCCcEEEecCCCCcccHHHHHhcccEEEe
Q 011969 339 LRLKRVAFRTMWLSAEDYPLLLGSADLGVC 368 (474)
Q Consensus 339 l~l~~V~f~g~~v~~~~~~~~l~~adv~v~ 368 (474)
.|. .|.+ ..++...++.||++..
T Consensus 200 ~G~-~v~~------~~d~~~a~~~aDvvyt 222 (301)
T TIGR00670 200 KGI-KVRE------TESLEEVIDEADVLYV 222 (301)
T ss_pred cCC-EEEE------ECCHHHHhCCCCEEEE
Confidence 552 3433 3788999999999887
No 220
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=50.21 E-value=46 Score=36.64 Aligned_cols=78 Identities=13% Similarity=0.139 Sum_probs=53.3
Q ss_pred ecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccc---------------c---------
Q 011969 347 RTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIE---------------E--------- 402 (474)
Q Consensus 347 ~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~---------------e--------- 402 (474)
.|. ++.+++..+++.+-++|=+-.|-. |.+-+||+|.|+|.|-....... +
T Consensus 327 HG~-l~~~ef~~lL~~akvfiGlGfP~E----gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e 401 (559)
T PF15024_consen 327 HGI-LSGDEFQQLLRKAKVFIGLGFPYE----GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAE 401 (559)
T ss_pred cCc-CCHHHHHHHHHhhhEeeecCCCCC----CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHH
Confidence 455 889999999999999997422222 33779999999999876532111 1
Q ss_pred -ccccCCcEEEeC--CHHHHHHHHHHHHhCC
Q 011969 403 -LVKVDKNGLLFS--SSSELADQLLMLFKGF 430 (474)
Q Consensus 403 -~v~~~~~G~l~~--~~~~la~~i~~l~~~~ 430 (474)
.+.. -.-+.++ |.+++.++|+++++..
T Consensus 402 ~~iG~-PhVytVd~~n~~~v~~Avk~il~~~ 431 (559)
T PF15024_consen 402 EFIGE-PHVYTVDINNSTEVEAAVKAILATP 431 (559)
T ss_pred hhCCC-CeEEEEcCCCHHHHHHHHHHHHhcC
Confidence 1111 1223343 7899999999999863
No 221
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=48.35 E-value=2.9e+02 Score=27.49 Aligned_cols=127 Identities=11% Similarity=0.102 Sum_probs=82.6
Q ss_pred CCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHH
Q 011969 256 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYE 333 (474)
Q Consensus 256 ~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~ 333 (474)
.+-|+++..-.+.....|++.+++.++.. .+.-+|+=+-|. .+++.
T Consensus 90 ~~~p~vlm~Y~N~i~~~G~e~F~~~~~~a--------------------------------GvdgviipDLP~ee~~~~~ 137 (263)
T CHL00200 90 IKAPIVIFTYYNPVLHYGINKFIKKISQA--------------------------------GVKGLIIPDLPYEESDYLI 137 (263)
T ss_pred CCCCEEEEecccHHHHhCHHHHHHHHHHc--------------------------------CCeEEEecCCCHHHHHHHH
Confidence 34464444344445567988888887763 355566655443 45677
Q ss_pred HHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeecc-CC-CC--CCCchHHHHHH-----hcCCcEEEeccc-----c
Q 011969 334 EKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHT-SS-SG--LDLPMKVVDMF-----GCGLPVCAVSYS-----C 399 (474)
Q Consensus 334 ~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~-~s-~~--e~~p~kv~Eam-----a~G~PVia~~~~-----~ 399 (474)
+.+++.|++.|.+...--+.+.+..+.+.++-||...+ +. .| ..++..+-|.. ..++|++. ..| .
T Consensus 138 ~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~v-GFGI~~~e~ 216 (263)
T CHL00200 138 SVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIIL-GFGISTSEQ 216 (263)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEE-ECCcCCHHH
Confidence 88999999999998874567889999999994544321 11 33 34666777776 67889887 332 2
Q ss_pred cccccccCCcEEEeCC
Q 011969 400 IEELVKVDKNGLLFSS 415 (474)
Q Consensus 400 ~~e~v~~~~~G~l~~~ 415 (474)
..++...|..|+++.+
T Consensus 217 ~~~~~~~GADGvVVGS 232 (263)
T CHL00200 217 IKQIKGWNINGIVIGS 232 (263)
T ss_pred HHHHHhcCCCEEEECH
Confidence 2334444577899876
No 222
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=47.34 E-value=2.7e+02 Score=29.56 Aligned_cols=87 Identities=14% Similarity=0.117 Sum_probs=51.6
Q ss_pred CCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCC---------------CCcccHHHHHhcccEEEeeccCCCCCCCch
Q 011969 316 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW---------------LSAEDYPLLLGSADLGVCLHTSSSGLDLPM 380 (474)
Q Consensus 316 ~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~---------------v~~~~~~~~l~~adv~v~~~~~s~~e~~p~ 380 (474)
++-++.|+|.|+.-...-......|..+|...+.- ++.+++...+..+|+.+.. +++...-+..
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~a-T~s~~~ii~~ 257 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISS-TGAPHPIVSK 257 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEEC-CCCCCceEcH
Confidence 45688999988765555555555665455554331 2234566778899999984 2222212344
Q ss_pred HHHHHHhcC--CcEEEecccccccc
Q 011969 381 KVVDMFGCG--LPVCAVSYSCIEEL 403 (474)
Q Consensus 381 kv~Eama~G--~PVia~~~~~~~e~ 403 (474)
..++.+..+ .|.+..|.+...++
T Consensus 258 e~l~~~~~~~~~~~~viDla~Prdi 282 (417)
T TIGR01035 258 EDVERALRERTRPLFIIDIAVPRDV 282 (417)
T ss_pred HHHHHHHhcCCCCeEEEEeCCCCCC
Confidence 556655443 57788887765554
No 223
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=47.25 E-value=1.4e+02 Score=29.26 Aligned_cols=58 Identities=14% Similarity=0.011 Sum_probs=40.8
Q ss_pred CcEEEecC-CCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccc
Q 011969 342 KRVAFRTM-WLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC 399 (474)
Q Consensus 342 ~~V~f~g~-~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~ 399 (474)
++|.|.|. -++.+++...+..||++++.-++-.-.....-+.+|-..|.|++..+...
T Consensus 151 P~vV~FGE~~~~~~~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~ 209 (242)
T PTZ00408 151 PHIVWFGEMPLYMDEIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEE 209 (242)
T ss_pred CCEEEcCCCCCcHHHHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCC
Confidence 57888887 46667788889999999996433333333334456888999999887543
No 224
>PLN02527 aspartate carbamoyltransferase
Probab=46.99 E-value=3.3e+02 Score=27.72 Aligned_cols=128 Identities=10% Similarity=-0.001 Sum_probs=74.9
Q ss_pred HHHhhhcCEEEEeCH--HHHHHHHHHhCCceEEEeCCCC-CCCCCCC-hHHHHHHHHhhhhccCCCCCccccccccccCC
Q 011969 161 KYYGKMANGCLCVTQ--AMQHELAQNWGIKATVLYDQPP-EFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNAGMEG 236 (474)
Q Consensus 161 ~~~~~~ad~vi~vS~--~~~~~l~~~~~~~~~vi~n~~~-~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 236 (474)
+.+.+++|.+++=+. ...+++.+....+ +-|+.+ ..+||+. .-.-..+.+++|.
T Consensus 91 ~vls~y~D~iviR~~~~~~~~~~a~~~~vP---VINa~~g~~~HPtQ~LaDl~Ti~e~~g~------------------- 148 (306)
T PLN02527 91 RTVEGYSDIIVLRHFESGAARRAAATAEIP---VINAGDGPGQHPTQALLDVYTIQREIGR------------------- 148 (306)
T ss_pred HHHHHhCcEEEEECCChhHHHHHHHhCCCC---EEECCCCCCCChHHHHHHHHHHHHHhCC-------------------
Confidence 445567898877553 4455566543333 345433 5688873 2233334444441
Q ss_pred cCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCC
Q 011969 237 QKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYP 316 (474)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (474)
+ . -+.+.++|-....+=..-++.++..+ .
T Consensus 149 -----------------l-~--g~kva~vGD~~~~rv~~Sl~~~~~~~-------------------------------~ 177 (306)
T PLN02527 149 -----------------L-D--GIKVGLVGDLANGRTVRSLAYLLAKY-------------------------------E 177 (306)
T ss_pred -----------------c-C--CCEEEEECCCCCChhHHHHHHHHHhc-------------------------------C
Confidence 1 1 13788999775444456666666543 4
Q ss_pred CEEEEEEeCCCC--hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEe
Q 011969 317 RLLFIITGKGPD--KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVC 368 (474)
Q Consensus 317 ~~~l~ivG~g~~--~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~ 368 (474)
.+.+.+++.... .+++.+.+++.|. ++.+ ..++.+.++.||++..
T Consensus 178 g~~v~~~~P~~~~~~~~~~~~~~~~g~-~~~~------~~d~~~a~~~aDvvyt 224 (306)
T PLN02527 178 DVKIYFVAPDVVKMKDDIKDYLTSKGV-EWEE------SSDLMEVASKCDVLYQ 224 (306)
T ss_pred CCEEEEECCCccCCCHHHHHHHHHcCC-EEEE------EcCHHHHhCCCCEEEE
Confidence 678989885332 2445555655442 3333 3678899999999888
No 225
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=46.89 E-value=50 Score=27.89 Aligned_cols=71 Identities=6% Similarity=0.037 Sum_probs=46.1
Q ss_pred EEEEeCCCCh----HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHH-HHhcCCcEEE
Q 011969 320 FIITGKGPDK----ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVD-MFGCGLPVCA 394 (474)
Q Consensus 320 l~ivG~g~~~----~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~E-ama~G~PVia 394 (474)
++++|.|-.. +.+++.+++.|++ +.+. . .+..++......+|+++.- |-...-+. .+-| +-..|+||..
T Consensus 4 ll~C~~GaSSs~la~km~~~a~~~gi~-~~i~-a-~~~~e~~~~~~~~Dvill~--PQv~~~~~-~i~~~~~~~~ipv~~ 77 (99)
T cd05565 4 LVLCAGGGTSGLLANALNKGAKERGVP-LEAA-A-GAYGSHYDMIPDYDLVILA--PQMASYYD-ELKKDTDRLGIKLVT 77 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCc-EEEE-E-eeHHHHHHhccCCCEEEEc--ChHHHHHH-HHHHHhhhcCCCEEE
Confidence 5667877543 6678888888874 4443 2 4678999999999988872 22221122 2333 3356899988
Q ss_pred ec
Q 011969 395 VS 396 (474)
Q Consensus 395 ~~ 396 (474)
.+
T Consensus 78 I~ 79 (99)
T cd05565 78 TT 79 (99)
T ss_pred eC
Confidence 76
No 226
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=46.31 E-value=3.6e+02 Score=28.68 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=26.8
Q ss_pred CCCCceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCC
Q 011969 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGG 43 (474)
Q Consensus 1 m~~~~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~ 43 (474)
|.++++++|+..| .|-.-.+..|.+. ++-..+++..+
T Consensus 1 ~~~~~kvLviG~g-----~rehal~~~~~~~-~~~~~~~~~pg 37 (426)
T PRK13789 1 MQVKLKVLLIGSG-----GRESAIAFALRKS-NLLSELKVFPG 37 (426)
T ss_pred CCCCcEEEEECCC-----HHHHHHHHHHHhC-CCCCEEEEECC
Confidence 7777778876665 5888888888875 77667777554
No 227
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=46.19 E-value=74 Score=33.14 Aligned_cols=107 Identities=9% Similarity=0.029 Sum_probs=66.3
Q ss_pred CEEEEEEeCCCChHHHHHHHHHc---CCC----cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcC
Q 011969 317 RLLFIITGKGPDKESYEEKIRRL---RLK----RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG 389 (474)
Q Consensus 317 ~~~l~ivG~g~~~~~~~~~~~~l---~l~----~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G 389 (474)
+-.+.|++.|.......+.++.+ |++ ++.++-+ +|.+.+...++.++-++........-|+|..+.|.++-.
T Consensus 233 G~di~Iia~Gs~~~~aleAa~~L~~~Gi~v~vI~~~~l~P-ld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~ 311 (355)
T PTZ00182 233 GKDVTIVGYGSQVHVALKAAEELAKEGISCEVIDLRSLRP-WDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMED 311 (355)
T ss_pred CCCEEEEEeCHHHHHHHHHHHHHHhCCCcEEEEEEeeCCC-CCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 34677777777766666666655 442 4555555 788888999999988887655555567999998888664
Q ss_pred ------CcEEEecccccccccccCC--cEEEeCCHHHHHHHHHHH
Q 011969 390 ------LPVCAVSYSCIEELVKVDK--NGLLFSSSSELADQLLML 426 (474)
Q Consensus 390 ------~PVia~~~~~~~e~v~~~~--~G~l~~~~~~la~~i~~l 426 (474)
.|+.-..... ..+.... -..+..+.+.+.+++..+
T Consensus 312 ~~~~l~~pv~ri~~~d--~~~p~~~~le~~~~~~~~~i~~~~~~~ 354 (355)
T PTZ00182 312 CFLYLEAPIKRVCGAD--TPFPYAKNLEPAYLPDKEKVVEAAKRV 354 (355)
T ss_pred hhhhcCCCeEEeCCCC--ccCCCChHHHHHhCCCHHHHHHHHHHh
Confidence 3665432211 1121111 112335777777777665
No 228
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=45.17 E-value=70 Score=33.78 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=28.2
Q ss_pred cccHHHHHhc--ccEEEeeccCCCCC-CCchHHHHHHhcCCcEEEec
Q 011969 353 AEDYPLLLGS--ADLGVCLHTSSSGL-DLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 353 ~~~~~~~l~~--adv~v~~~~~s~~e-~~p~kv~Eama~G~PVia~~ 396 (474)
.+.+..+... +|++|. ...|. ++ ...++|+.+|++|+..+
T Consensus 80 ~~~~~~l~~~~~vD~Vv~---Ai~G~aGl-~ptl~Ai~aGK~VaLAN 122 (385)
T PRK05447 80 EEGLCELAALPEADVVVA---AIVGAAGL-LPTLAAIRAGKRIALAN 122 (385)
T ss_pred hhHHHHHhcCCCCCEEEE---eCcCcccH-HHHHHHHHCCCcEEEeC
Confidence 3556666654 588888 34442 34 46899999999999966
No 229
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=44.99 E-value=69 Score=31.65 Aligned_cols=75 Identities=25% Similarity=0.262 Sum_probs=48.4
Q ss_pred EEEecCCCCcccHHHHHhcc--cEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEeCCHHHHHH
Q 011969 344 VAFRTMWLSAEDYPLLLGSA--DLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSSELAD 421 (474)
Q Consensus 344 V~f~g~~v~~~~~~~~l~~a--dv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~~~~~la~ 421 (474)
+...|+ .+.+.=..++++. |++|. .-|-+.++..|+--|..+|+|||...-+.... ..-.+.+.+++.+
T Consensus 171 iam~gP-fs~e~n~aL~~~~~i~~lVt--K~SG~~g~~eKi~AA~~lgi~vivI~RP~~~~------~~~~~~~~~e~~~ 241 (248)
T PRK08057 171 IALRGP-FSLELERALLRQHRIDVVVT--KNSGGAGTEAKLEAARELGIPVVMIARPALPY------ADREFEDVAELVA 241 (248)
T ss_pred EEeeCC-CCHHHHHHHHHHcCCCEEEE--cCCCchhhHHHHHHHHHcCCeEEEEeCCCCCC------CCcccCCHHHHHH
Confidence 444454 5555555666654 55554 33333467889999999999999987664321 1134578888888
Q ss_pred HHHHHH
Q 011969 422 QLLMLF 427 (474)
Q Consensus 422 ~i~~l~ 427 (474)
.+...+
T Consensus 242 ~l~~~~ 247 (248)
T PRK08057 242 WLRHLL 247 (248)
T ss_pred HHHHhh
Confidence 877654
No 230
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=44.67 E-value=3.5e+02 Score=27.43 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=71.2
Q ss_pred HHHHhhhcCEEEEe--CHHHHHHHHHHhCCceEEEeCCCCCCCCCCC-hHHHHHHHHhhhhccCCCCCccccccccccCC
Q 011969 160 EKYYGKMANGCLCV--TQAMQHELAQNWGIKATVLYDQPPEFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNAGMEG 236 (474)
Q Consensus 160 e~~~~~~ad~vi~v--S~~~~~~l~~~~~~~~~vi~n~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 236 (474)
-+.+..++|.+++= .....+.+.+..+.+ | .|+.....||+. .-+-..+++++|.
T Consensus 92 ~~~l~~~~D~iv~R~~~~~~~~~~a~~~~vP--V-INag~~~~HPtQaL~Dl~Ti~e~~g~------------------- 149 (304)
T PRK00779 92 ARVLSRYVDAIMIRTFEHETLEELAEYSTVP--V-INGLTDLSHPCQILADLLTIYEHRGS------------------- 149 (304)
T ss_pred HHHHHHhCCEEEEcCCChhHHHHHHHhCCCC--E-EeCCCCCCChHHHHHHHHHHHHHhCC-------------------
Confidence 34455678988854 444555666644443 3 444445688873 2233344444441
Q ss_pred cCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCC
Q 011969 237 QKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYP 316 (474)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (474)
+ ..+.+.++|- ..+=..-++.++..+
T Consensus 150 -----------------l---~gl~i~~vGd--~~~v~~Sl~~~l~~~-------------------------------- 175 (304)
T PRK00779 150 -----------------L---KGLKVAWVGD--GNNVANSLLLAAALL-------------------------------- 175 (304)
T ss_pred -----------------c---CCcEEEEEeC--CCccHHHHHHHHHHc--------------------------------
Confidence 1 1237888987 334445555555442
Q ss_pred CEEEEEEeCCCCh--HHHHH-HHHHcCCCcEEEecCCCCcccHHHHHhcccEEEe
Q 011969 317 RLLFIITGKGPDK--ESYEE-KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVC 368 (474)
Q Consensus 317 ~~~l~ivG~g~~~--~~~~~-~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~ 368 (474)
++++.+++..... +++.+ .+++.|. .+.+ .+++.+.+..||++..
T Consensus 176 g~~v~~~~P~~~~~~~~~~~~~~~~~g~-~~~~------~~d~~~a~~~aDvvy~ 223 (304)
T PRK00779 176 GFDLRVATPKGYEPDPEIVEKIAKETGA-SIEV------THDPKEAVKGADVVYT 223 (304)
T ss_pred CCEEEEECCcccCCCHHHHHHHHHHcCC-eEEE------EcCHHHHhCCCCEEEe
Confidence 4789999954322 22322 2455552 3332 4788999999999998
No 231
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=44.59 E-value=3.3e+02 Score=27.01 Aligned_cols=94 Identities=19% Similarity=0.180 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCCCcEEEecCCCCcccHHHHHh----cccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccc
Q 011969 330 ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLG----SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVK 405 (474)
Q Consensus 330 ~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~----~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~ 405 (474)
+.+++.++++|++-+.+. - -+.+++...+. ..|+++++........+...+..+..+++||++.. ...++
T Consensus 150 ~~~~~~a~~~g~~l~~~~-v-~~~~~~~~~~~~l~~~~da~~~~~~~~~~~~~~~i~~~~~~~~iPv~~~~----~~~v~ 223 (294)
T PF04392_consen 150 EQLRKAAKKLGIELVEIP-V-PSSEDLEQALEALAEKVDALYLLPDNLVDSNFEAILQLANEAKIPVFGSS----DFYVK 223 (294)
T ss_dssp HHHHHHHHHTT-EEEEEE-E-SSGGGHHHHHHHHCTT-SEEEE-S-HHHHHTHHHHHHHCCCTT--EEESS----HHHHC
T ss_pred HHHHHHHHHcCCEEEEEe-c-CcHhHHHHHHHHhhccCCEEEEECCcchHhHHHHHHHHHHhcCCCEEECC----HHHhc
Confidence 456667777887422222 2 24566666555 46888875222122233344556678999999975 34465
Q ss_pred cCCcEEEeCC----HHHHHHHHHHHHhC
Q 011969 406 VDKNGLLFSS----SSELADQLLMLFKG 429 (474)
Q Consensus 406 ~~~~G~l~~~----~~~la~~i~~l~~~ 429 (474)
+|..|-+..| -...++...+++++
T Consensus 224 ~Gal~~~~~~~~~~G~~Aa~~a~~IL~G 251 (294)
T PF04392_consen 224 AGALGGYSVDYYEQGRQAAEMAVRILKG 251 (294)
T ss_dssp TT-SEEEE--HHHHHHHHHHHHHHHCTT
T ss_pred CCcEEEEccCHHHHHHHHHHHHHHHHCC
Confidence 6655544444 33445566666665
No 232
>PRK06849 hypothetical protein; Provisional
Probab=43.30 E-value=76 Score=33.02 Aligned_cols=38 Identities=11% Similarity=-0.052 Sum_probs=26.3
Q ss_pred CCCCceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCC
Q 011969 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGG 43 (474)
Q Consensus 1 m~~~~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~ 43 (474)
|.++++|+|...+. +-....+++|.+. |++|.++....
T Consensus 1 ~~~~~~VLI~G~~~----~~~l~iar~l~~~-G~~Vi~~d~~~ 38 (389)
T PRK06849 1 MNTKKTVLITGARA----PAALELARLFHNA-GHTVILADSLK 38 (389)
T ss_pred CCCCCEEEEeCCCc----HHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 67777777664432 3445567788886 99999997653
No 233
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=42.34 E-value=15 Score=31.78 Aligned_cols=51 Identities=16% Similarity=0.123 Sum_probs=32.4
Q ss_pred EEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEee
Q 011969 8 CVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMT 62 (474)
Q Consensus 8 ~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~ 62 (474)
++...|.-|+-.=+.-.+..|.++ ||+|.+.+.... ....+..|++++.++
T Consensus 2 li~~~Gt~Ghv~P~lala~~L~~r-Gh~V~~~~~~~~---~~~v~~~Gl~~~~~~ 52 (139)
T PF03033_consen 2 LIATGGTRGHVYPFLALARALRRR-GHEVRLATPPDF---RERVEAAGLEFVPIP 52 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHT-T-EEEEEETGGG---HHHHHHTT-EEEESS
T ss_pred EEEEcCChhHHHHHHHHHHHHhcc-CCeEEEeecccc---eecccccCceEEEec
Confidence 445555444333345567888886 999998886542 234477899999988
No 234
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=42.16 E-value=3e+02 Score=26.43 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=48.1
Q ss_pred EEEEEEeCCCCh-HHHHHHHHHcCCCcE--EEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEE
Q 011969 318 LLFIITGKGPDK-ESYEEKIRRLRLKRV--AFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 394 (474)
Q Consensus 318 ~~l~ivG~g~~~-~~~~~~~~~l~l~~V--~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia 394 (474)
-.++++|..+.. .-+++.++..|-..| .|+|+-+....... +..=|+.++. ....+ ..++.||.-+|.|+|+
T Consensus 68 ~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~-~~~Pdliiv~--dp~~~--~~AI~EA~kl~IP~Ia 142 (204)
T PRK04020 68 EKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKG-YIEPDVVVVT--DPRGD--AQAVKEAIEVGIPVVA 142 (204)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCcchhc-cCCCCEEEEE--CCccc--HHHHHHHHHhCCCEEE
Confidence 367788866543 456666777664211 45555343333333 3355666662 22222 5699999999999999
Q ss_pred e-ccccccccc
Q 011969 395 V-SYSCIEELV 404 (474)
Q Consensus 395 ~-~~~~~~e~v 404 (474)
- |..+-.+.|
T Consensus 143 ivDTn~dp~~V 153 (204)
T PRK04020 143 LCDTDNLTSNV 153 (204)
T ss_pred EEeCCCCcccC
Confidence 5 444444443
No 235
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=42.11 E-value=97 Score=27.74 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=37.2
Q ss_pred cHHHHHhcccEEEeeccCCCCCCCc--hHH---HHHHhcCCcEEEecccccccccccCC--cEEEeCCHHHHHHHHHHH
Q 011969 355 DYPLLLGSADLGVCLHTSSSGLDLP--MKV---VDMFGCGLPVCAVSYSCIEELVKVDK--NGLLFSSSSELADQLLML 426 (474)
Q Consensus 355 ~~~~~l~~adv~v~~~~~s~~e~~p--~kv---~Eama~G~PVia~~~~~~~e~v~~~~--~G~l~~~~~~la~~i~~l 426 (474)
.-..++..||++|.- .|+.+- +.. -=|.|+|+|.|.-.-....--+++-. .-.++.+++...+.|..+
T Consensus 68 RT~~li~~aDvvVvr----FGekYKQWNaAfDAg~aaAlgKplI~lh~~~~~HpLKEvdaaA~avaetp~Qvv~iL~Yv 142 (144)
T TIGR03646 68 RTRKLIEKADVVIAL----FGEKYKQWNAAFDAGYAAALGKPLIILRPEELIHPLKEVDNKAQAVVETPEQAIETLKYI 142 (144)
T ss_pred HHHHHHhhCCEEEEE----echHHHHHHHHhhHHHHHHcCCCeEEecchhccccHHHHhHHHHHHhcCHHHHHHHHHHh
Confidence 345688999999984 332220 123 33678999999975443333232211 112234566555555544
No 236
>PLN00203 glutamyl-tRNA reductase
Probab=41.97 E-value=2.3e+02 Score=31.25 Aligned_cols=86 Identities=13% Similarity=0.020 Sum_probs=50.2
Q ss_pred CEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCC------------------CCcccHHHHHhcccEEEeeccCCCCCCC
Q 011969 317 RLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW------------------LSAEDYPLLLGSADLGVCLHTSSSGLDL 378 (474)
Q Consensus 317 ~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~------------------v~~~~~~~~l~~adv~v~~~~~s~~e~~ 378 (474)
+.++.|+|.|..-..+-+.....|..+|.+...- .+.++....+..||+++.. +++...-+
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsA-T~s~~pvI 344 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTS-TSSETPLF 344 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEc-cCCCCCee
Confidence 5678999987655444444444454444443221 2345667778899998873 22222223
Q ss_pred chHHHHHHhc-----CCcEEEecccccccc
Q 011969 379 PMKVVDMFGC-----GLPVCAVSYSCIEEL 403 (474)
Q Consensus 379 p~kv~Eama~-----G~PVia~~~~~~~e~ 403 (474)
....++.+.. |.|.+..|.+-.+++
T Consensus 345 ~~e~l~~~~~~~~~~~~~~~~IDLAvPRdI 374 (519)
T PLN00203 345 LKEHVEALPPASDTVGGKRLFVDISVPRNV 374 (519)
T ss_pred CHHHHHHhhhcccccCCCeEEEEeCCCCCC
Confidence 3455555532 579999997766654
No 237
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=41.79 E-value=1e+02 Score=31.02 Aligned_cols=46 Identities=15% Similarity=0.329 Sum_probs=29.0
Q ss_pred ceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEE
Q 011969 5 GRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHT 60 (474)
Q Consensus 5 ~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~ 60 (474)
.+++|+..|.+|+ ..|..|++. ||+|++++... . +.....|+.+..
T Consensus 6 m~I~IiG~GaiG~-----~lA~~L~~~-g~~V~~~~r~~---~-~~~~~~g~~~~~ 51 (313)
T PRK06249 6 PRIGIIGTGAIGG-----FYGAMLARA-GFDVHFLLRSD---Y-EAVRENGLQVDS 51 (313)
T ss_pred cEEEEECCCHHHH-----HHHHHHHHC-CCeEEEEEeCC---H-HHHHhCCeEEEe
Confidence 3588887776653 345667776 99999998653 1 223344665543
No 238
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=41.67 E-value=56 Score=30.64 Aligned_cols=75 Identities=20% Similarity=0.165 Sum_probs=35.5
Q ss_pred CCCEEEEEEeCCCChHHHHHHHHHc-CC-CcEEEecCCCCcccHHHHHhcc--cEEEeeccCCCCCCCchHHHHHHhcCC
Q 011969 315 YPRLLFIITGKGPDKESYEEKIRRL-RL-KRVAFRTMWLSAEDYPLLLGSA--DLGVCLHTSSSGLDLPMKVVDMFGCGL 390 (474)
Q Consensus 315 ~~~~~l~ivG~g~~~~~~~~~~~~l-~l-~~V~f~g~~v~~~~~~~~l~~a--dv~v~~~~~s~~e~~p~kv~Eama~G~ 390 (474)
+|+.+++++...+.-.+ .+++. .- -.+.+.+. =....+..+++.- |++|+ ..+|=.|+-+.++-..|+
T Consensus 48 ~p~~~illT~~T~tg~~---~~~~~~~~~v~~~~~P~-D~~~~~~rfl~~~~P~~~i~----~EtElWPnll~~a~~~~i 119 (186)
T PF04413_consen 48 RPDLRILLTTTTPTGRE---MARKLLPDRVDVQYLPL-DFPWAVRRFLDHWRPDLLIW----VETELWPNLLREAKRRGI 119 (186)
T ss_dssp --TS-EEEEES-CCHHH---HHHGG-GGG-SEEE----SSHHHHHHHHHHH--SEEEE----ES----HHHHHH-----S
T ss_pred CCCCeEEEEecCCchHH---HHHHhCCCCeEEEEeCc-cCHHHHHHHHHHhCCCEEEE----EccccCHHHHHHHhhcCC
Confidence 68899999987654322 22222 11 13555432 1133456666664 88887 466778999999999999
Q ss_pred cEEEecc
Q 011969 391 PVCAVSY 397 (474)
Q Consensus 391 PVia~~~ 397 (474)
|++..+.
T Consensus 120 p~~LvNa 126 (186)
T PF04413_consen 120 PVVLVNA 126 (186)
T ss_dssp -EEEEEE
T ss_pred CEEEEee
Confidence 9998763
No 239
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=41.53 E-value=1.2e+02 Score=28.02 Aligned_cols=84 Identities=14% Similarity=0.030 Sum_probs=58.1
Q ss_pred cCCCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCC-----------CcccHHHHHhcccEEEee--ccCCCCCCCch
Q 011969 314 LYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWL-----------SAEDYPLLLGSADLGVCL--HTSSSGLDLPM 380 (474)
Q Consensus 314 ~~~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v-----------~~~~~~~~l~~adv~v~~--~~~s~~e~~p~ 380 (474)
...+.++-|+|-|.--..+-+.++.+|. +|....... ...++.++++.||++++. .++....-+.-
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~ 111 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINA 111 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSH
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeeee
Confidence 3456799999999877778888888886 455444322 246788999999999983 33333445788
Q ss_pred HHHHHHhcCCcEEEeccc
Q 011969 381 KVVDMFGCGLPVCAVSYS 398 (474)
Q Consensus 381 kv~Eama~G~PVia~~~~ 398 (474)
..++.|--|.-+|-+.-|
T Consensus 112 ~~l~~mk~ga~lvN~aRG 129 (178)
T PF02826_consen 112 EFLAKMKPGAVLVNVARG 129 (178)
T ss_dssp HHHHTSTTTEEEEESSSG
T ss_pred eeeeccccceEEEeccch
Confidence 999999999877766543
No 240
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=41.47 E-value=1.7e+02 Score=27.78 Aligned_cols=81 Identities=12% Similarity=0.056 Sum_probs=48.4
Q ss_pred CCEEEEEEeCCCC--h---HHHHHHHHHc-CCCcEEEecCCCCcccHHHHHhcccEEEeeccCC-------CCCCCchHH
Q 011969 316 PRLLFIITGKGPD--K---ESYEEKIRRL-RLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-------SGLDLPMKV 382 (474)
Q Consensus 316 ~~~~l~ivG~g~~--~---~~~~~~~~~l-~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s-------~~e~~p~kv 382 (474)
++.++.++..... . ..+.+..+++ |.+.+.+. . .+.++....+..||+.++|--.. ..-++-..+
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~-~-~~~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l 107 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLH-L-FDTEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAIL 107 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEe-c-cCcccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHHH
Confidence 3456777775432 2 3355556667 66333332 2 33578789999999999952100 012234455
Q ss_pred HHHHhcCCcEEEeccc
Q 011969 383 VDMFGCGLPVCAVSYS 398 (474)
Q Consensus 383 ~Eama~G~PVia~~~~ 398 (474)
-++...|+|++.+..|
T Consensus 108 ~~~~~~g~~i~G~SAG 123 (212)
T cd03146 108 KAALERGVVYIGWSAG 123 (212)
T ss_pred HHHHHCCCEEEEECHh
Confidence 6677789999998744
No 241
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=41.27 E-value=1.6e+02 Score=28.87 Aligned_cols=82 Identities=15% Similarity=0.069 Sum_probs=50.0
Q ss_pred CcEEEecCCCCc---ccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEe-CCHH
Q 011969 342 KRVAFRTMWLSA---EDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF-SSSS 417 (474)
Q Consensus 342 ~~V~f~g~~v~~---~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~-~~~~ 417 (474)
++|.|.|..+|. ++.......||++|+.-++-.-.....-+..+...|.|++..+.+... . +....+.. .+.+
T Consensus 155 P~Vv~FgE~~p~~~~~~~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~--~-d~~~~~~i~~~~~ 231 (244)
T PRK14138 155 PNIVFFGEALPQDALREAIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETP--L-DDIATLKYNMDVV 231 (244)
T ss_pred CCEEECCCcCCHHHHHHHHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCC--C-CcceeEEEeCCHH
Confidence 588888887775 445577788999999633333332222233577789999988764322 1 22233444 4676
Q ss_pred HHHHHHHHH
Q 011969 418 ELADQLLML 426 (474)
Q Consensus 418 ~la~~i~~l 426 (474)
+....|...
T Consensus 232 ~~l~~l~~~ 240 (244)
T PRK14138 232 EFANRVMSE 240 (244)
T ss_pred HHHHHHHHH
Confidence 666666553
No 242
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=40.84 E-value=91 Score=29.62 Aligned_cols=66 Identities=20% Similarity=0.314 Sum_probs=45.6
Q ss_pred hhHhHhhhcCCccccCCCEEEEEEeCCCChH--HHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEee
Q 011969 300 EEVFLKEISDGKQYLYPRLLFIITGKGPDKE--SYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCL 369 (474)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~--~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~ 369 (474)
+++|.++++..-. ..++-+.|.++|..++ ..-+.+++.|.+-|.+.|. +...+..+...+|+.+..
T Consensus 96 ~~~f~~ql~~~~~--~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~--~~s~l~~l~~~~D~~i~i 163 (196)
T PRK10886 96 DEVYAKQVRALGH--AGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGY--DGGELAGLLGPQDVEIRI 163 (196)
T ss_pred HHHHHHHHHHcCC--CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCC--CCChhhhccccCCEEEEc
Confidence 3444444443222 4589999999887664 4455677778777777765 677888888889999985
No 243
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=40.27 E-value=4.7e+02 Score=27.58 Aligned_cols=83 Identities=19% Similarity=0.193 Sum_probs=56.6
Q ss_pred cccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc--c---cccc---cccCCcEEEeCCHHHHHHHHH
Q 011969 353 AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS--C---IEEL---VKVDKNGLLFSSSSELADQLL 424 (474)
Q Consensus 353 ~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~--~---~~e~---v~~~~~G~l~~~~~~la~~i~ 424 (474)
..++..++..+|++|. . +..+.+|+|...+||+.-... . .... .+...-|-++.+.+++.++|.
T Consensus 277 ~~di~dll~~sDiLIT---D-----ySSv~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~~~~~li~ai~ 348 (388)
T COG1887 277 NADINDLLLVSDILIT---D-----YSSVIFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVETQEELIDAIK 348 (388)
T ss_pred chhHHHHHhhhCEEEe---e-----chHHHHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccccHHHHHHHHH
Confidence 5899999999999997 2 344899999999999976311 1 1111 223345677778889999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHH
Q 011969 425 MLFKGFPDDSDVLKKLRNGTLE 446 (474)
Q Consensus 425 ~l~~~~~~~~~~~~~~~~~~~~ 446 (474)
..... +....++.+....+
T Consensus 349 ~~~~~---~~~~~~k~~~~~~~ 367 (388)
T COG1887 349 PYDED---GNYDLEKLRVFNDK 367 (388)
T ss_pred hhhcc---cchhHHHHHHHHHh
Confidence 88774 23344444444444
No 244
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.83 E-value=1e+02 Score=31.69 Aligned_cols=215 Identities=15% Similarity=0.161 Sum_probs=114.7
Q ss_pred HHHHHHHHhhhcCEEEEeCHHHHHHHHHHhCCceEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccC
Q 011969 156 YRWIEKYYGKMANGCLCVTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGME 235 (474)
Q Consensus 156 ~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 235 (474)
|.-.+....|.|-.++.-.....+.+.+ +|+++..+-|..-+-..|.... ..
T Consensus 168 y~pwwlm~~rrc~~vf~rD~~Taq~L~~-rgvna~~vGnpmmD~L~p~~~~--~q------------------------- 219 (412)
T COG4370 168 YMPWWLMLRRRCWAVFPRDALTAQHLAN-RGVNAAYVGNPMMDGLPPPERD--PQ------------------------- 219 (412)
T ss_pred hhhHHHHhcccceeeeccccccHHHHHh-cCCchhhccChhhccCCCccCC--ch-------------------------
Confidence 3333555667788888888877877777 4887555544422323332100 00
Q ss_pred CcCcchhhhhcccccccccCCCCCeEEEEEeec--ccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccc
Q 011969 236 GQKADETIFTSLAGIDVFLKPNRPALVVSSTSW--TPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQY 313 (474)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l--~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (474)
.+.++.+++-+.-|+= .-..|...++.++..+... ..+-|||-.|-++-+.
T Consensus 220 -----------------~l~~g~~viaLLPGsR~pea~~nl~~il~slcal~~~----------~a~vvfw~ai~~~lpl 272 (412)
T COG4370 220 -----------------LLLTGVPVIALLPGSRVPEAQTNLAVILGSLCALPAM----------FALVVFWAAIAPELPL 272 (412)
T ss_pred -----------------hhccCCceEEecCCCCChHHHhhHHHHHHHHhhhHHH----------HHHHHHHhccCcCCCH
Confidence 0112333344444443 2346788888877766542 1223666665443321
Q ss_pred cCCCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEE
Q 011969 314 LYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVC 393 (474)
Q Consensus 314 ~~~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVi 393 (474)
. +.=.-.+...++-.++.++-++-.+. ++.+.+...+..+|+.+-. -|...=.+...|+|||
T Consensus 273 ~-------~l~~l~e~~gWq~~ad~~~kdnc~l~---lsqqsfadiLH~adaalgm--------AGTAtEQavGLGkPvi 334 (412)
T COG4370 273 L-------LLWTLEERQGWQPLADRFGKDNCSLW---LSQQSFADILHAADAALGM--------AGTATEQAVGLGKPVI 334 (412)
T ss_pred H-------HHHHHHHhcCcchhhhhhccCceEEE---EeHHHHHHHHHHHHHHHHh--------ccchHHHhhccCCcee
Confidence 1 10000001112222333333344443 5689999999999996641 2446678899999999
Q ss_pred Eeccccc------ccccc--cCCcEEEeCCHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHh
Q 011969 394 AVSYSCI------EELVK--VDKNGLLFSSSSELADQLLM-LFKGFPDDSDVLKKLRNGTLEM 447 (474)
Q Consensus 394 a~~~~~~------~e~v~--~~~~G~l~~~~~~la~~i~~-l~~~~~~~~~~~~~~~~~~~~~ 447 (474)
+....+. .|-=. -+..-.++...+.-++++.. ++. |++....+|.|+++-
T Consensus 335 ~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~aq~a~~~~q~ll~----dp~r~~air~nGqrR 393 (412)
T COG4370 335 GFPGQGPQYNPGFAERQQRLLGASLTLVRPEAQAAAQAVQELLG----DPQRLTAIRHNGQRR 393 (412)
T ss_pred ecCCCCCCcChHHHHHHHHHhcceeeecCCchhhHHHHHHHHhc----ChHHHHHHHhcchhh
Confidence 9864332 22100 01122233444445555555 777 488999999888763
No 245
>PLN02735 carbamoyl-phosphate synthase
Probab=39.77 E-value=5.2e+02 Score=31.30 Aligned_cols=43 Identities=9% Similarity=0.079 Sum_probs=26.4
Q ss_pred CCceEEEEEeCC--CCCCch---HHHHHHHHHhhCCCeEEEEecCCCC
Q 011969 3 RRGRACVVVLGD--LGRSPR---MQYQALSLARQMSLEVDVVAYGGSK 45 (474)
Q Consensus 3 ~~~~~~i~~~~~--~g~~~r---~~~~a~~l~~~~g~eV~Vv~~~~~~ 45 (474)
.+|+++|+..|. +|.+.- -..++..-++++|+++.++.+....
T Consensus 573 ~~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI~v~~npet 620 (1102)
T PLN02735 573 NKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNSNPET 620 (1102)
T ss_pred CCceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEEEEeCCCcc
Confidence 356788787775 343222 2234544445569999999877544
No 246
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=39.13 E-value=1.5e+02 Score=28.83 Aligned_cols=57 Identities=16% Similarity=0.117 Sum_probs=38.0
Q ss_pred CcEEEecCCCCcc---cHHHHHhcccEEEeeccCCCCCCCch-HHHHHHhcCCcEEEeccccc
Q 011969 342 KRVAFRTMWLSAE---DYPLLLGSADLGVCLHTSSSGLDLPM-KVVDMFGCGLPVCAVSYSCI 400 (474)
Q Consensus 342 ~~V~f~g~~v~~~---~~~~~l~~adv~v~~~~~s~~e~~p~-kv~Eama~G~PVia~~~~~~ 400 (474)
++|.+.|.-+|.+ .....++.||++|+.-++..- .|. .+.+++..|.|+|..+....
T Consensus 152 P~Vv~FGE~lp~~~~~~~~~~~~~aDlllvvGTSl~V--~pa~~l~~~~~~~~~~v~iN~~~~ 212 (235)
T cd01408 152 PDIVFFGESLPSRFFSHMEEDKEEADLLIVIGTSLKV--APFASLPSRVPSEVPRVLINREPV 212 (235)
T ss_pred CcEEECCCCCCHHHHHHHHHHHhcCCEEEEECCCCee--ccHHHHHHHHhCCCcEEEEeCCCC
Confidence 5888888756653 344557789999996333222 332 46677778999999885543
No 247
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=39.13 E-value=72 Score=32.74 Aligned_cols=77 Identities=23% Similarity=0.363 Sum_probs=48.9
Q ss_pred CCCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCC--CC--------cccHHHHHhcccEEEeeccCCCCCCCchHHHH
Q 011969 315 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW--LS--------AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVD 384 (474)
Q Consensus 315 ~~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~--v~--------~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~E 384 (474)
.|+..++|-|...-...+++..+.+|+.-+..-|.. -. .++++..+...-++|+ +|-+++-++.|
T Consensus 75 npd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv-----~GwDy~~~~~e 149 (337)
T COG2247 75 NPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVV-----YGWDYADALME 149 (337)
T ss_pred CCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEE-----eccccHHHHHH
Confidence 577666666654455778999999998544444420 01 2233444444456665 56567779999
Q ss_pred HHhcC-CcEEEec
Q 011969 385 MFGCG-LPVCAVS 396 (474)
Q Consensus 385 ama~G-~PVia~~ 396 (474)
+|--| +||+.++
T Consensus 150 ~~k~~~~p~~~~n 162 (337)
T COG2247 150 LMKEGIVPVILKN 162 (337)
T ss_pred HHhcCcceeEecc
Confidence 99999 6777665
No 248
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=38.90 E-value=1.3e+02 Score=21.66 Aligned_cols=62 Identities=23% Similarity=0.414 Sum_probs=41.3
Q ss_pred EEEEEEeC--CCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEe
Q 011969 318 LLFIITGK--GPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 395 (474)
Q Consensus 318 ~~l~ivG~--g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~ 395 (474)
..+.+.|. +.+++.+++.++.+|- . +... ++ ..++.+|+ ++.. .+.+...|...|+|||..
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg-~--v~~~-~~--------~~~thvI~---~~~~--~~~~~~~~~~~~~~iV~~ 64 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG-K--VTSS-VS--------KKTTHVIV---GSDA--GPKKLLKAIKLGIPIVTP 64 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC-E--Eecc-cc--------CCceEEEE---CCCC--CchHHHHHHHcCCeEecH
Confidence 56788886 4778899999999984 1 1112 11 46777777 2222 122378899999999976
Q ss_pred c
Q 011969 396 S 396 (474)
Q Consensus 396 ~ 396 (474)
+
T Consensus 65 ~ 65 (72)
T cd00027 65 E 65 (72)
T ss_pred H
Confidence 4
No 249
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=38.89 E-value=83 Score=31.08 Aligned_cols=78 Identities=23% Similarity=0.178 Sum_probs=49.2
Q ss_pred HcCC--Cc-EEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEE
Q 011969 338 RLRL--KR-VAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLL 412 (474)
Q Consensus 338 ~l~l--~~-V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l 412 (474)
++|+ .+ +...|. .+.+.=..++++ +|++|. .-|-+.++..|+--|..+|+|||...-+....-. -.
T Consensus 166 ~~g~~~~~iia~~GP-fs~e~n~al~~~~~i~~lVt--K~SG~~g~~eKi~AA~~lgi~vivI~RP~~~~~~------~~ 236 (249)
T PF02571_consen 166 ALGFPPKNIIAMQGP-FSKELNRALFRQYGIDVLVT--KESGGSGFDEKIEAARELGIPVIVIKRPPEPYGD------PV 236 (249)
T ss_pred cCCCChhhEEEEeCC-CCHHHHHHHHHHcCCCEEEE--cCCCchhhHHHHHHHHHcCCeEEEEeCCCCCCCC------cc
Confidence 5555 23 444455 566655666665 555555 3333357888999999999999998766544211 12
Q ss_pred eCCHHHHHHHHH
Q 011969 413 FSSSSELADQLL 424 (474)
Q Consensus 413 ~~~~~~la~~i~ 424 (474)
+++.+++.+.++
T Consensus 237 ~~~~~e~l~~l~ 248 (249)
T PF02571_consen 237 VETIEELLDWLE 248 (249)
T ss_pred cCCHHHHHHHHh
Confidence 467777766654
No 250
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=38.32 E-value=1.9e+02 Score=28.65 Aligned_cols=38 Identities=26% Similarity=0.444 Sum_probs=28.1
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCC
Q 011969 6 RACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGG 43 (474)
Q Consensus 6 ~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~ 43 (474)
++-|+-+|++|.|+-+....-..|.+-+.+|.|++.+.
T Consensus 4 KiGiiKlGNig~s~~idl~lDErAdRedI~vrv~gsGa 41 (277)
T PRK00994 4 KIGIIKLGNIGMSPVIDLLLDERADREDIDVRVVGSGA 41 (277)
T ss_pred EEEEEEecccchHHHHHHHHHhhhcccCceEEEeccCC
Confidence 46678889999887777666666655478888887653
No 251
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=38.24 E-value=4.6e+02 Score=26.88 Aligned_cols=137 Identities=16% Similarity=0.146 Sum_probs=82.2
Q ss_pred ccCCCchHHHHHHHHHHHHhhhcCEEEE--eCHHHHHHHHHHhCCceEEEeCCCCCCCCCCCh-HHHHHHHHhhhhccCC
Q 011969 145 SLGRRSHFVSIYRWIEKYYGKMANGCLC--VTQAMQHELAQNWGIKATVLYDQPPEFFHPTSL-EEKHELFCRLNKILHQ 221 (474)
Q Consensus 145 ~~~~~~~~~~~~~~~e~~~~~~ad~vi~--vS~~~~~~l~~~~~~~~~vi~n~~~~~f~~~~~-~~~~~~~~~l~~~~~~ 221 (474)
.+++.-++. -.-+.+.++.|+|.. .++...+.+++.-+.+ +.|+-.+.+||+.. ..-..+.+.+|
T Consensus 82 Qlgr~Esi~----DTArVLsr~~D~I~~R~~~~~~ve~lA~~s~VP---ViNgLtD~~HP~Q~LADl~Ti~E~~g----- 149 (310)
T COG0078 82 QLGRGESIK----DTARVLSRMVDAIMIRGFSHETLEELAKYSGVP---VINGLTDEFHPCQALADLMTIKEHFG----- 149 (310)
T ss_pred ccCCCCcHH----HHHHHHHhhhheEEEecccHHHHHHHHHhCCCc---eEcccccccCcHHHHHHHHHHHHhcC-----
Confidence 355555554 334556677887664 4566667788866665 57888899999842 23444555554
Q ss_pred CCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCH-HHHHHHHHHhHHHHhhhhccCCCchh
Q 011969 222 PLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDF-GILLEAALMYDRRVAAILNEDDSTNE 300 (474)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~-~~Li~a~~~l~~~~~~~~~~~~~~~~ 300 (474)
.-....+.|+|-- .|+ .-|+.+...+
T Consensus 150 ----------------------------------~l~g~k~a~vGDg---NNv~nSl~~~~a~~---------------- 176 (310)
T COG0078 150 ----------------------------------SLKGLKLAYVGDG---NNVANSLLLAAAKL---------------- 176 (310)
T ss_pred ----------------------------------cccCcEEEEEcCc---chHHHHHHHHHHHh----------------
Confidence 1122378888876 222 2334444443
Q ss_pred hHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHHHHHHHcCC---CcEEEecCCCCcccHHHHHhcccEEEe
Q 011969 301 EVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEKIRRLRL---KRVAFRTMWLSAEDYPLLLGSADLGVC 368 (474)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~~~~~~l~l---~~V~f~g~~v~~~~~~~~l~~adv~v~ 368 (474)
.+.+.+++.... .+++.+.+++... ..|.+. +|.....+.||++.-
T Consensus 177 ----------------G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t------~d~~eAv~gADvvyT 227 (310)
T COG0078 177 ----------------GMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLT------EDPEEAVKGADVVYT 227 (310)
T ss_pred ----------------CCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEe------cCHHHHhCCCCEEEe
Confidence 577888874322 2445555555321 245554 778889999999886
No 252
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=37.87 E-value=3.6e+02 Score=25.58 Aligned_cols=44 Identities=16% Similarity=0.013 Sum_probs=24.9
Q ss_pred HHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccc
Q 011969 358 LLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEEL 403 (474)
Q Consensus 358 ~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~ 403 (474)
..+..+++++.. +...+---...-+|-+.|+||-+.+.+...++
T Consensus 65 ~dl~~~~lVi~a--t~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f 108 (205)
T TIGR01470 65 DILEGAFLVIAA--TDDEELNRRVAHAARARGVPVNVVDDPELCSF 108 (205)
T ss_pred HHhCCcEEEEEC--CCCHHHHHHHHHHHHHcCCEEEECCCcccCeE
Confidence 346677777762 22222122345566688999987765444333
No 253
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=37.48 E-value=58 Score=27.09 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=44.0
Q ss_pred EEEEEeCCCCh----HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHH--hcCCcE
Q 011969 319 LFIITGKGPDK----ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMF--GCGLPV 392 (474)
Q Consensus 319 ~l~ivG~g~~~----~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eam--a~G~PV 392 (474)
-++++|.|-.. +.+++.+++.|++ +.+.. .+..++......+|++++- |.... -..-++.. ..|+||
T Consensus 6 ILl~C~~G~sSS~l~~k~~~~~~~~gi~-~~v~a--~~~~~~~~~~~~~Dvill~--pqi~~--~~~~i~~~~~~~~ipv 78 (95)
T TIGR00853 6 ILLLCAAGMSTSLLVNKMNKAAEEYGVP-VKIAA--GSYGAAGEKLDDADVVLLA--PQVAY--MLPDLKKETDKKGIPV 78 (95)
T ss_pred EEEECCCchhHHHHHHHHHHHHHHCCCc-EEEEE--ecHHHHHhhcCCCCEEEEC--chHHH--HHHHHHHHhhhcCCCE
Confidence 46778877543 5567777777774 33332 3467788888999998882 22221 12334433 357899
Q ss_pred EEecc
Q 011969 393 CAVSY 397 (474)
Q Consensus 393 ia~~~ 397 (474)
...+-
T Consensus 79 ~~I~~ 83 (95)
T TIGR00853 79 EVING 83 (95)
T ss_pred EEeCh
Confidence 99763
No 254
>PRK09358 adenosine deaminase; Provisional
Probab=37.01 E-value=3.7e+02 Score=27.32 Aligned_cols=101 Identities=19% Similarity=0.256 Sum_probs=57.6
Q ss_pred hHHHHHHHHHcCCCcEEEecCCCC-cccHHHHHhcccEEE--eeccCCCCC--C----C-chHHHHHHhcCCcEEEe-cc
Q 011969 329 KESYEEKIRRLRLKRVAFRTMWLS-AEDYPLLLGSADLGV--CLHTSSSGL--D----L-PMKVVDMFGCGLPVCAV-SY 397 (474)
Q Consensus 329 ~~~~~~~~~~l~l~~V~f~g~~v~-~~~~~~~l~~adv~v--~~~~~s~~e--~----~-p~kv~Eama~G~PVia~-~~ 397 (474)
..++.+.++.+|.+++. .|.++. .++...++...++.| || ++.. + + ...+-+++..|+||... |.
T Consensus 208 ~~~~~~al~~lg~~ri~-Hg~~l~~~~~~~~~l~~~gi~v~~cP---~Sn~~l~~~~~~~~~pi~~l~~~Gv~v~lgTD~ 283 (340)
T PRK09358 208 PESIWEALDELGAERIG-HGVRAIEDPALMARLADRRIPLEVCP---TSNVQTGAVPSLAEHPLKTLLDAGVRVTINTDD 283 (340)
T ss_pred hhHHHHHHHHcCCcccc-hhhhhccCHHHHHHHHHcCCeEEECC---CccccccccCCcccChHHHHHHCCCEEEECCCC
Confidence 34566666667776543 344453 356788888888876 54 3221 1 1 13578899999998764 33
Q ss_pred cccccccccCCcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 011969 398 SCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 447 (474)
Q Consensus 398 ~~~~e~v~~~~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 447 (474)
++.. + .| +.+.+..+.+.+..+.++..++..|+.++
T Consensus 284 ~~~~--------~---~~---l~~e~~~~~~~~~l~~~el~~l~~nai~~ 319 (340)
T PRK09358 284 PLVF--------G---TT---LTEEYEALAEAFGLSDEDLAQLARNALEA 319 (340)
T ss_pred Cccc--------C---CC---HHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 2210 0 12 33333333333334677788888888764
No 255
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=36.52 E-value=4.1e+02 Score=26.49 Aligned_cols=85 Identities=25% Similarity=0.217 Sum_probs=53.6
Q ss_pred HHHHHHHHcCC--C-cEEEecCCCCcccHHHHHhc--ccEEEeeccCCCC-C-CCchHHHHHHhcCCcEEEecccccccc
Q 011969 331 SYEEKIRRLRL--K-RVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSG-L-DLPMKVVDMFGCGLPVCAVSYSCIEEL 403 (474)
Q Consensus 331 ~~~~~~~~l~l--~-~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~-e-~~p~kv~Eama~G~PVia~~~~~~~e~ 403 (474)
+..+.+.++++ + -|...|. .+.+.=..++.+ +|++|. ..+| . ++.-|+-=|...|+|||...-+ -
T Consensus 161 ~~~~~~~~~~~p~~~Iia~~GP-fs~~~n~all~q~~id~vIt---K~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp--~-- 232 (257)
T COG2099 161 DVLAKCEDLGVPPARIIAMRGP-FSEEDNKALLEQYRIDVVVT---KNSGGAGGTYEKIEAARELGIPVIMIERP--I-- 232 (257)
T ss_pred HHHHHHHhcCCChhhEEEecCC-cChHHHHHHHHHhCCCEEEE---ccCCcccCcHHHHHHHHHcCCcEEEEecC--C--
Confidence 34556777787 2 3555676 666666666666 566665 4444 3 5778999999999999998655 1
Q ss_pred cccCCcEEEeCCHHHHHHHHHHHH
Q 011969 404 VKVDKNGLLFSSSSELADQLLMLF 427 (474)
Q Consensus 404 v~~~~~G~l~~~~~~la~~i~~l~ 427 (474)
++.+ .+.+.+++.+++.++.
T Consensus 233 --~~~~--~~~~v~~~~~~l~~~~ 252 (257)
T COG2099 233 --DYPA--GFGDVTDLDAALAQLR 252 (257)
T ss_pred --cCCc--ccchhhHHHHHHHHHH
Confidence 1111 2235566666665553
No 256
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=35.73 E-value=38 Score=34.04 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=31.9
Q ss_pred CCCCceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCC
Q 011969 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGG 43 (474)
Q Consensus 1 m~~~~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~ 43 (474)
|.|++++.|..-|++|-+.-..+.|..|+++ |+.|.+|-.+.
T Consensus 1 ~~~~~~iai~~KGGvGKTt~~~nLa~~la~~-g~kVLliD~D~ 42 (295)
T PRK13234 1 MSKLRQIAFYGKGGIGKSTTSQNTLAALVEM-GQKILIVGCDP 42 (295)
T ss_pred CCcceEEEEECCCCccHHHHHHHHHHHHHHC-CCeEEEEeccc
Confidence 7888877776445566556666788899997 99999997654
No 257
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=35.67 E-value=77 Score=26.29 Aligned_cols=69 Identities=10% Similarity=0.212 Sum_probs=44.1
Q ss_pred EEEEeCCCCh----HHHHHHHHHcCCC-cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHH--HHhcCCcE
Q 011969 320 FIITGKGPDK----ESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVD--MFGCGLPV 392 (474)
Q Consensus 320 l~ivG~g~~~----~~~~~~~~~l~l~-~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~E--ama~G~PV 392 (474)
++++|.|-.. +.+++.+++.|++ .|.-. +..++..+...+|+.++. |-... -.+-++ +...++||
T Consensus 3 l~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~----~~~~~~~~~~~~Diil~~--Pqv~~--~~~~i~~~~~~~~~pv 74 (96)
T cd05564 3 LLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAV----PESELEEYIDDADVVLLG--PQVRY--MLDEVKKKAAEYGIPV 74 (96)
T ss_pred EEEcCCCchHHHHHHHHHHHHHHCCCceEEEEe----cHHHHHHhcCCCCEEEEC--hhHHH--HHHHHHHHhccCCCcE
Confidence 6788877543 5667777777774 33333 457787888999998882 22221 123333 34578999
Q ss_pred EEec
Q 011969 393 CAVS 396 (474)
Q Consensus 393 ia~~ 396 (474)
...+
T Consensus 75 ~~I~ 78 (96)
T cd05564 75 AVID 78 (96)
T ss_pred EEcC
Confidence 9876
No 258
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=35.65 E-value=4.5e+02 Score=26.02 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=22.2
Q ss_pred CCCCCCchHHHHHHHHHhhCCCeEEEEe
Q 011969 13 GDLGRSPRMQYQALSLARQMSLEVDVVA 40 (474)
Q Consensus 13 ~~~g~~~r~~~~a~~l~~~~g~eV~Vv~ 40 (474)
|+.|.|.-..+.|..+++. |.+|-++=
T Consensus 67 gGvGKStva~nLA~alA~~-G~rVlliD 93 (265)
T COG0489 67 GGVGKSTVAVNLAAALAQL-GKRVLLLD 93 (265)
T ss_pred CCCcHHHHHHHHHHHHHhc-CCcEEEEe
Confidence 4566677778889999996 99999996
No 259
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=35.55 E-value=2.2e+02 Score=26.99 Aligned_cols=54 Identities=15% Similarity=0.047 Sum_probs=28.4
Q ss_pred ceEEEEEeCCCCCCchHHHH-HHHHHhh-CCCeEEEE-ecCCCCCCcceeccCCeEEEEee
Q 011969 5 GRACVVVLGDLGRSPRMQYQ-ALSLARQ-MSLEVDVV-AYGGSKPHAAILEHPSIHIHTMT 62 (474)
Q Consensus 5 ~~~~i~~~~~~g~~~r~~~~-a~~l~~~-~g~eV~Vv-~~~~~~~~~~~~~~~gi~i~~~~ 62 (474)
+++.|+..|+ +.+... ...+.++ .+++|.++ +...........+..||.++.++
T Consensus 2 ~ki~vl~sg~----gs~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~ 58 (200)
T PRK05647 2 KRIVVLASGN----GSNLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLD 58 (200)
T ss_pred ceEEEEEcCC----ChhHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEEC
Confidence 3477777765 333333 3344443 23566654 43332223345567789988876
No 260
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=35.12 E-value=3.2e+02 Score=26.11 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCCCcEEEecCC----CCcccHHHHHhcccEEEeeccCC-------CCCCCchHHHHHHhcCCcEEEeccc
Q 011969 330 ESYEEKIRRLRLKRVAFRTMW----LSAEDYPLLLGSADLGVCLHTSS-------SGLDLPMKVVDMFGCGLPVCAVSYS 398 (474)
Q Consensus 330 ~~~~~~~~~l~l~~V~f~g~~----v~~~~~~~~l~~adv~v~~~~~s-------~~e~~p~kv~Eama~G~PVia~~~~ 398 (474)
+++.+..+++|.+.+.++-.. -+.+++...+..||+.++.--.. .+.++-..+-++...|+|++.++.|
T Consensus 47 ~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAG 126 (217)
T cd03145 47 EEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAG 126 (217)
T ss_pred HHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHH
Confidence 456667778888666666431 13557788999999999831110 1122334567778899999988744
No 261
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=34.80 E-value=85 Score=31.16 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=29.3
Q ss_pred cCCCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc
Q 011969 314 LYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS 362 (474)
Q Consensus 314 ~~~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~ 362 (474)
..|+..++.+|+|.+++ +.++.++++-+.+-. +.|+...+..
T Consensus 227 g~p~~~f~~IGDG~eEe---~aAk~l~wPFw~I~~----h~Dl~~l~~a 268 (274)
T TIGR01658 227 GHPKVRFCAIGDGWEEC---TAAQAMNWPFVKIDL----HPDSSHRFPG 268 (274)
T ss_pred CCCCceEEEeCCChhHH---HHHHhcCCCeEEeec----CCCHHHhCcc
Confidence 56789999999998754 577888887665543 3555555443
No 262
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=34.70 E-value=1.3e+02 Score=31.25 Aligned_cols=105 Identities=7% Similarity=-0.057 Sum_probs=65.8
Q ss_pred EEEEEeCCCChHHHHHHHHHc---CCC----cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcC--
Q 011969 319 LFIITGKGPDKESYEEKIRRL---RLK----RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG-- 389 (474)
Q Consensus 319 ~l~ivG~g~~~~~~~~~~~~l---~l~----~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G-- 389 (474)
.+.|++.|.......+.++.| |++ ++.++-. ++.+.+....+..+.++........-|+|..+.|.++-.
T Consensus 230 dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~~~ikP-lD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f 308 (356)
T PLN02683 230 DVTIVAFSKMVGYALKAAEILAKEGISAEVINLRSIRP-LDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESF 308 (356)
T ss_pred CEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCc-cCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhch
Confidence 456666666665555555444 552 3444444 677888899999988887655555567999999988654
Q ss_pred ----CcEEEeccccc----ccccccCCcEEEeCCHHHHHHHHHHHHh
Q 011969 390 ----LPVCAVSYSCI----EELVKVDKNGLLFSSSSELADQLLMLFK 428 (474)
Q Consensus 390 ----~PVia~~~~~~----~e~v~~~~~G~l~~~~~~la~~i~~l~~ 428 (474)
.|+.-...... ...+++ +..++++.+.+++.+++.
T Consensus 309 ~~~~~~v~rlg~~d~~~p~~~~le~----~~~p~~~~i~~a~~~~~~ 351 (356)
T PLN02683 309 DYLDAPVERIAGADVPMPYAANLER----LALPQVEDIVRAAKRACY 351 (356)
T ss_pred hccCCCeEEeccCCcCCCccHHHHH----hhCCCHHHHHHHHHHHHH
Confidence 36554322111 111111 234688899999998876
No 263
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=34.64 E-value=1.2e+02 Score=31.35 Aligned_cols=91 Identities=21% Similarity=0.154 Sum_probs=53.8
Q ss_pred cEEEecCC-----CCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCC-cEEEec-ccccccccccCCcEEE-e-
Q 011969 343 RVAFRTMW-----LSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGL-PVCAVS-YSCIEELVKVDKNGLL-F- 413 (474)
Q Consensus 343 ~V~f~g~~-----v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~-PVia~~-~~~~~e~v~~~~~G~l-~- 413 (474)
.|...|.- .+.++...+++..-.+++.-.+....-..-|+.+|+.+|+ ||+--. .+...+++-. +.++ +
T Consensus 203 ~vd~yG~c~~~~~~~~~~~~~~~~~ykF~lafENs~c~dYiTEK~~~al~~g~VPI~~G~~~~~~~~~~P~--~SfI~~~ 280 (349)
T PF00852_consen 203 PVDSYGKCGNNNPCPRDCKLELLSKYKFYLAFENSNCPDYITEKFWNALLAGTVPIYWGPPRPNYEEFAPP--NSFIHVD 280 (349)
T ss_dssp -EEE-SSTT--SSS--S-HHHHHHTEEEEEEE-SS--TT---HHHHHHHHTTSEEEEES---TTHHHHS-G--GGSEEGG
T ss_pred CeEccCCCCCCCCcccccccccccCcEEEEEecCCCCCCCCCHHHHHHHHCCeEEEEECCEecccccCCCC--CCccchh
Confidence 46666652 2445688899999999986444333335669999999995 555431 5566666533 3444 3
Q ss_pred --CCHHHHHHHHHHHHhCCCCCHHHHHH
Q 011969 414 --SSSSELADQLLMLFKGFPDDSDVLKK 439 (474)
Q Consensus 414 --~~~~~la~~i~~l~~~~~~~~~~~~~ 439 (474)
+++++||+.|..|-++ ++.+.+
T Consensus 281 df~s~~~La~yl~~l~~n----~~~Y~~ 304 (349)
T PF00852_consen 281 DFKSPKELADYLKYLDKN----DELYNK 304 (349)
T ss_dssp GSSSHHHHHHHHHHHHT-----HHHHH-
T ss_pred cCCCHHHHHHHHHHHhcC----HHHHhh
Confidence 3699999999999884 666554
No 264
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=34.60 E-value=1.7e+02 Score=30.06 Aligned_cols=78 Identities=14% Similarity=0.071 Sum_probs=52.2
Q ss_pred CCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCCc-----------ccHHHHHhcccEEEe--eccCCCCCCCchHH
Q 011969 316 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSA-----------EDYPLLLGSADLGVC--LHTSSSGLDLPMKV 382 (474)
Q Consensus 316 ~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~-----------~~~~~~l~~adv~v~--~~~~s~~e~~p~kv 382 (474)
...++-|+|-|.--..+.+.++.+|.+ |.....+.+. .++..+++.||++++ |.++....-++-..
T Consensus 141 ~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~ 219 (324)
T COG0111 141 AGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEE 219 (324)
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHH
Confidence 356899999987777788888888863 3333332333 569999999999998 22333222356677
Q ss_pred HHHHhcCCcEEE
Q 011969 383 VDMFGCGLPVCA 394 (474)
Q Consensus 383 ~Eama~G~PVia 394 (474)
+..|--|.-+|-
T Consensus 220 ~a~MK~gailIN 231 (324)
T COG0111 220 LAKMKPGAILIN 231 (324)
T ss_pred HhhCCCCeEEEE
Confidence 888877764443
No 265
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=34.21 E-value=3.2e+02 Score=26.70 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=21.6
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecC
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHN 136 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 136 (474)
.++|+|++..||.....-...++....+.=+|+.++.
T Consensus 211 ~~yD~ViiD~pp~~~~~d~~~~~~~~d~vilV~~~~~ 247 (274)
T TIGR03029 211 GDYDVVIVDTPSAEHSSDAQIVATRARGTLIVSRVNE 247 (274)
T ss_pred hcCCEEEEeCCCcccccHHHHHHHhCCeEEEEEECCC
Confidence 6799999999987543323334443344434444443
No 266
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=34.20 E-value=5.6e+02 Score=26.68 Aligned_cols=72 Identities=17% Similarity=0.137 Sum_probs=45.0
Q ss_pred CEEEEEEeCC---CChHHHHHHHHHcCCC-cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHh--cCC
Q 011969 317 RLLFIITGKG---PDKESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFG--CGL 390 (474)
Q Consensus 317 ~~~l~ivG~g---~~~~~~~~~~~~l~l~-~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama--~G~ 390 (474)
+-.+.|+|.- .+..+++++.+++|++ +..|.+. -+.+|+.. +..|.+-+.+. +.. +....++|. +|+
T Consensus 160 ~~~VNiig~~~~~~d~~el~~lL~~~Gi~~~~~~~~~-~~~~~i~~-~~~A~~niv~~-~~~----~~~~a~~L~~r~Gi 232 (406)
T cd01967 160 PYDVNIIGEYNIGGDAWVIKPLLEELGIRVNATFTGD-GTVDELRR-AHRAKLNLVHC-SRS----MNYLAREMEERYGI 232 (406)
T ss_pred CCeEEEEeccccchhHHHHHHHHHHcCCEEEEEeCCC-CCHHHHhh-CccCCEEEEEC-hHH----HHHHHHHHHHhhCC
Confidence 3467777752 2457899999999995 5556555 56777776 55666555421 112 334444443 799
Q ss_pred cEEEe
Q 011969 391 PVCAV 395 (474)
Q Consensus 391 PVia~ 395 (474)
|.+..
T Consensus 233 P~~~~ 237 (406)
T cd01967 233 PYMEV 237 (406)
T ss_pred CEEEe
Confidence 99763
No 267
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=34.01 E-value=5.5e+02 Score=26.52 Aligned_cols=166 Identities=16% Similarity=0.115 Sum_probs=86.8
Q ss_pred CChhHHHHHHHHHhhCCCcEEE-EecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCH--HHHHHHHHHhCC
Q 011969 111 PSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQ--AMQHELAQNWGI 187 (474)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~-~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~--~~~~~l~~~~~~ 187 (474)
|+.-|-...-.+....|..+++ +.-+. +.++.-.+.- .-+.+.+++|.+++=.. ...+++.+...+
T Consensus 56 pSTRTR~SFe~A~~~LGg~~i~l~~~~s-------s~~kgEsl~D----t~rvls~y~D~iviR~~~~~~~~~~a~~~~v 124 (331)
T PRK02102 56 TSTRTRCAFEVAAIDLGAHVTYLGPNDS-------QLGKKESIED----TARVLGRMYDGIEYRGFKQEIVEELAKYSGV 124 (331)
T ss_pred CChhHHHHHHHHHHHcCCCEEEcCcccc-------cCCCCcCHHH----HHHHHhhcCCEEEEECCchHHHHHHHHhCCC
Confidence 4455554455555555555443 22221 2344444432 23445567898877554 445556554344
Q ss_pred ceEEEeCCCCCCCCCCC-hHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEe
Q 011969 188 KATVLYDQPPEFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSST 266 (474)
Q Consensus 188 ~~~vi~n~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G 266 (474)
+ | -|+.....||+. .-....+++++|. + .-..+.|+|
T Consensus 125 P--V-INa~~~~~HPtQaLaDl~Ti~e~~g~------------------------------------l---~g~~va~vG 162 (331)
T PRK02102 125 P--V-WNGLTDEWHPTQMLADFMTMKEHFGP------------------------------------L---KGLKLAYVG 162 (331)
T ss_pred C--E-EECCCCCCChHHHHHHHHHHHHHhCC------------------------------------C---CCCEEEEEC
Confidence 3 3 465445788873 2233344444440 1 113788999
Q ss_pred ecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHHHH----HHHcC
Q 011969 267 SWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEK----IRRLR 340 (474)
Q Consensus 267 ~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~~~----~~~l~ 340 (474)
-+.. .=..-++.++..+ ++.+.+++.... .+++.+. ++..|
T Consensus 163 d~~~-~v~~Sl~~~~~~~--------------------------------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g 209 (331)
T PRK02102 163 DGRN-NMANSLMVGGAKL--------------------------------GMDVRICAPKELWPEEELVALAREIAKETG 209 (331)
T ss_pred CCcc-cHHHHHHHHHHHc--------------------------------CCEEEEECCcccccCHHHHHHHHHHHHHcC
Confidence 7742 2334444444432 478889884321 1233333 33334
Q ss_pred CCcEEEecCCCCcccHHHHHhcccEEEee
Q 011969 341 LKRVAFRTMWLSAEDYPLLLGSADLGVCL 369 (474)
Q Consensus 341 l~~V~f~g~~v~~~~~~~~l~~adv~v~~ 369 (474)
. .+.+ ..++...+..||++...
T Consensus 210 ~-~~~~------~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 210 A-KITI------TEDPEEAVKGADVIYTD 231 (331)
T ss_pred C-eEEE------EcCHHHHhCCCCEEEEc
Confidence 2 3433 36788999999999983
No 268
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=34.00 E-value=2e+02 Score=29.43 Aligned_cols=71 Identities=8% Similarity=-0.096 Sum_probs=49.9
Q ss_pred EEEEEEeCCCChHHHHHHHHHc---CCC----cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcC
Q 011969 318 LLFIITGKGPDKESYEEKIRRL---RLK----RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG 389 (474)
Q Consensus 318 ~~l~ivG~g~~~~~~~~~~~~l---~l~----~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G 389 (474)
-.+.|++.|.......+.++.+ |++ ++.++-+ +|.+.+...++.++.++........-|++..+.|.++..
T Consensus 202 ~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l~P-ld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~ 279 (327)
T PRK09212 202 SDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTLRP-LDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKE 279 (327)
T ss_pred CCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEecCCC-CCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHh
Confidence 3567777777766666666554 442 4555555 778889999999998888654455567888999998754
No 269
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=33.91 E-value=1.8e+02 Score=29.28 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=32.5
Q ss_pred CCceEEEEEeCCCCCCchHHHHHHHHHhh-CCCeEEEEecCCCCCCcceeccCCeEEEEee
Q 011969 3 RRGRACVVVLGDLGRSPRMQYQALSLARQ-MSLEVDVVAYGGSKPHAAILEHPSIHIHTMT 62 (474)
Q Consensus 3 ~~~~~~i~~~~~~g~~~r~~~~a~~l~~~-~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~ 62 (474)
+++++.|+..|. |. -++......... .+++|.++...... .....+..||.++.++
T Consensus 88 ~~~ri~vl~Sg~-gs--nl~al~~~~~~~~~~~~i~~visn~~~-~~~lA~~~gIp~~~~~ 144 (286)
T PRK06027 88 ERKRVVILVSKE-DH--CLGDLLWRWRSGELPVEIAAVISNHDD-LRSLVERFGIPFHHVP 144 (286)
T ss_pred cCcEEEEEEcCC-CC--CHHHHHHHHHcCCCCcEEEEEEEcChh-HHHHHHHhCCCEEEec
Confidence 466788887776 32 233322222221 35677777655433 2345667799998887
No 270
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=33.89 E-value=93 Score=28.77 Aligned_cols=52 Identities=8% Similarity=0.052 Sum_probs=37.9
Q ss_pred CCCEEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEee
Q 011969 315 YPRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCL 369 (474)
Q Consensus 315 ~~~~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~ 369 (474)
..+.+++|+|.|.. ...+.+...+.|. +|.+... ..+++...+..||+++..
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r--~~~~l~~~l~~aDiVIsa 94 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS--KTKNLKEHTKQADIVIVA 94 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC--CchhHHHHHhhCCEEEEc
Confidence 46789999999875 3334555555554 5777765 457899999999999983
No 271
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=33.56 E-value=6e+02 Score=26.88 Aligned_cols=87 Identities=13% Similarity=0.167 Sum_probs=50.8
Q ss_pred CCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCC---------------CCcccHHHHHhcccEEEeeccCCCCCCCch
Q 011969 316 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW---------------LSAEDYPLLLGSADLGVCLHTSSSGLDLPM 380 (474)
Q Consensus 316 ~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~---------------v~~~~~~~~l~~adv~v~~~~~s~~e~~p~ 380 (474)
++-++.|+|.|+.-...-..+...|..+|.+...- ++.++....+..+|+++.. +++...-+..
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~a-T~s~~~~i~~ 259 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISS-TGAPHPIIGK 259 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEEC-CCCCCcEEcH
Confidence 45688899988766555555556665556555431 1224455667889999983 2222211333
Q ss_pred HHHHHHhc---CCcEEEecccccccc
Q 011969 381 KVVDMFGC---GLPVCAVSYSCIEEL 403 (474)
Q Consensus 381 kv~Eama~---G~PVia~~~~~~~e~ 403 (474)
..++.+.. +.|.+..|.+...++
T Consensus 260 ~~l~~~~~~~~~~~~vviDla~Prdi 285 (423)
T PRK00045 260 GMVERALKARRHRPLLLVDLAVPRDI 285 (423)
T ss_pred HHHHHHHhhccCCCeEEEEeCCCCCC
Confidence 44454432 468888887766654
No 272
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=33.26 E-value=1.5e+02 Score=21.93 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=38.7
Q ss_pred EEEEEe-CCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec
Q 011969 319 LFIITG-KGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 319 ~l~ivG-~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~ 396 (474)
.+.+.| .+++++.+.+++..+|- .+.+. + -.....+|+. . .-+.|.-.|...|+|||..+
T Consensus 2 ~i~~sg~~~~~~~~l~~~i~~~Gg---~~~~~-l--------t~~~THLI~~---~---~~~~K~~~A~~~gi~vV~~~ 62 (63)
T PF12738_consen 2 VICFSGFSGKERSQLRKLIEALGG---KYSKD-L--------TKKTTHLICS---S---PEGKKYRKAKEWGIPVVSPD 62 (63)
T ss_dssp EEEEEEB-TTTCCHHHHHHHCTT----EEESS-S--------STT-SEEEEE---S-----HHHHHHHHHCTSEEEEHH
T ss_pred EEEECCCCHHHHHHHHHHHHHCCC---EEecc-c--------cCCceEEEEe---C---CCcHHHHHHHHCCCcEECCC
Confidence 456777 34567889999999883 34433 2 1266777762 2 23569999999999999753
No 273
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=33.01 E-value=2.3e+02 Score=27.98 Aligned_cols=77 Identities=3% Similarity=0.061 Sum_probs=49.3
Q ss_pred CCCEEEEEEeCC-----CChHHHHHHHHHcCCC--cEEEecCCCCcccHHHHHhccc------EEEeeccCCCCCCCchH
Q 011969 315 YPRLLFIITGKG-----PDKESYEEKIRRLRLK--RVAFRTMWLSAEDYPLLLGSAD------LGVCLHTSSSGLDLPMK 381 (474)
Q Consensus 315 ~~~~~l~ivG~g-----~~~~~~~~~~~~l~l~--~V~f~g~~v~~~~~~~~l~~ad------v~v~~~~~s~~e~~p~k 381 (474)
.+.-.+++.|+. ++.+.+++.+.++|++ .|..-. -+...+.+.....+ +.|+ |....++..
T Consensus 80 gk~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp~e~Ii~e~--~s~nT~en~~~a~~i~~~~~~iIV----Tq~fHm~RA 153 (239)
T PRK10834 80 GKVNYLLLSGDNALQSYNEPMTMRKDLIAAGVDPSDIVLDY--AGFRTLDSIVRTRKVFDTNDFIII----TQRFHCERA 153 (239)
T ss_pred CCCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCCHHHEEecC--CCCCHHHHHHHHHHHhCCCCEEEE----CCHHHHHHH
Confidence 455678888864 2335677788888993 444432 34455555544443 5555 333347889
Q ss_pred HHHHHhcCCcEEEecc
Q 011969 382 VVDMFGCGLPVCAVSY 397 (474)
Q Consensus 382 v~Eama~G~PVia~~~ 397 (474)
++-+-..|+.+++...
T Consensus 154 ~~ia~~~Gi~~~~~~a 169 (239)
T PRK10834 154 LFIALHMGIQAQCYAV 169 (239)
T ss_pred HHHHHHcCCceEEEeC
Confidence 9999999999888653
No 274
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=32.99 E-value=3.3e+02 Score=25.65 Aligned_cols=82 Identities=15% Similarity=0.060 Sum_probs=50.9
Q ss_pred CEEEEEEeCCC--C---hHHHHHHHHHcCCCcEEEecC-CCCcccHHHHHhcccEEEeeccCC-------CCCCCchHHH
Q 011969 317 RLLFIITGKGP--D---KESYEEKIRRLRLKRVAFRTM-WLSAEDYPLLLGSADLGVCLHTSS-------SGLDLPMKVV 383 (474)
Q Consensus 317 ~~~l~ivG~g~--~---~~~~~~~~~~l~l~~V~f~g~-~v~~~~~~~~l~~adv~v~~~~~s-------~~e~~p~kv~ 383 (474)
+.++.++.... . .+.+.+..+++|.+.+.+.-. -.+.+++...+..||+.+++--.+ .+.+.-..+.
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~ 108 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAIL 108 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHHH
Confidence 44555555332 2 245666777888755544421 024588999999999999941111 0111334678
Q ss_pred HHHhcCCcEEEeccc
Q 011969 384 DMFGCGLPVCAVSYS 398 (474)
Q Consensus 384 Eama~G~PVia~~~~ 398 (474)
+....|+|++.++.|
T Consensus 109 ~~~~~G~v~~G~SAG 123 (210)
T cd03129 109 KRVARGVVIGGTSAG 123 (210)
T ss_pred HHHHcCCeEEEcCHH
Confidence 888889999998754
No 275
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=32.37 E-value=63 Score=29.77 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=26.1
Q ss_pred hcccEEEeeccCC---CCCCCchHHHHHHhcCCcEEEe
Q 011969 361 GSADLGVCLHTSS---SGLDLPMKVVDMFGCGLPVCAV 395 (474)
Q Consensus 361 ~~adv~v~~~~~s---~~e~~p~kv~Eama~G~PVia~ 395 (474)
..+|++|+.-... .|.||--.+.+|++.|+||++.
T Consensus 92 ~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~ 129 (159)
T PF10649_consen 92 EGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTA 129 (159)
T ss_pred cCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEE
Confidence 3389999831111 4566778999999999999986
No 276
>PLN02929 NADH kinase
Probab=32.03 E-value=1.4e+02 Score=30.41 Aligned_cols=90 Identities=13% Similarity=0.239 Sum_probs=54.7
Q ss_pred HHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccccc---------c
Q 011969 331 SYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI---------E 401 (474)
Q Consensus 331 ~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~---------~ 401 (474)
.+++..++.|+ .+.. +...++......+|+.+.. ...| .=+...-.+..++||++.+.+.. .
T Consensus 38 ~~~~~L~~~gi---~~~~--v~r~~~~~~~~~~Dlvi~l--GGDG--T~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~ 108 (301)
T PLN02929 38 FCKDILQQKSV---DWEC--VLRNELSQPIRDVDLVVAV--GGDG--TLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSD 108 (301)
T ss_pred HHHHHHHHcCC---EEEE--eeccccccccCCCCEEEEE--CCcH--HHHHHHHHcCCCCcEEEEECCCccccccccccc
Confidence 34555555554 2221 1233445566789999984 2233 22233333556799999987631 1
Q ss_pred cccccCCcEEEeC-CHHHHHHHHHHHHhC
Q 011969 402 ELVKVDKNGLLFS-SSSELADQLLMLFKG 429 (474)
Q Consensus 402 e~v~~~~~G~l~~-~~~~la~~i~~l~~~ 429 (474)
++=..+..|++++ +++++.+.|.+++++
T Consensus 109 ~~~~~r~lGfL~~~~~~~~~~~L~~il~g 137 (301)
T PLN02929 109 EFDARRSTGHLCAATAEDFEQVLDDVLFG 137 (301)
T ss_pred ccccccCccccccCCHHHHHHHHHHHHcC
Confidence 2112236899997 799999999999985
No 277
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=31.76 E-value=6.9e+02 Score=27.05 Aligned_cols=91 Identities=12% Similarity=0.175 Sum_probs=56.5
Q ss_pred EEEEEeCCC--ChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHH--hcCCcEEE
Q 011969 319 LFIITGKGP--DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMF--GCGLPVCA 394 (474)
Q Consensus 319 ~l~ivG~g~--~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eam--a~G~PVia 394 (474)
.++++|.-+ +...++...+++|++-+.+++. -..++++..= ..+++|+..|-.+ ....++ .+|+|.+.
T Consensus 195 ~vnl~G~~~~~~~~~i~~lL~~lGI~v~~~lp~-~~~~eL~~~~--~~~~~c~~~P~ls-----~aa~~Le~~~gvp~~~ 266 (457)
T CHL00073 195 PLVLFGSLPSTVASQLTLELKRQGIKVSGWLPS-QRYTDLPSLG--EGVYVCGVNPFLS-----RTATTLMRRRKCKLIG 266 (457)
T ss_pred cEEEEEecCcccHHHHHHHHHHcCCeEeEEeCC-CCHHHHHhhC--cccEEEEcCcchH-----HHHHHHHHHhCCceee
Confidence 689999654 3477888999999965555543 4566666654 4466664333333 445555 57999888
Q ss_pred ecccccccccccCCcEEEeCCHHHHHHHHHHHHhC
Q 011969 395 VSYSCIEELVKVDKNGLLFSSSSELADQLLMLFKG 429 (474)
Q Consensus 395 ~~~~~~~e~v~~~~~G~l~~~~~~la~~i~~l~~~ 429 (474)
...+ + | ..+.+++..+|.+++..
T Consensus 267 ~P~P-----i-----G--i~~Td~fLr~Ia~~~G~ 289 (457)
T CHL00073 267 APFP-----I-----G--PDGTRAWIEKICSVFGI 289 (457)
T ss_pred cCCc-----C-----c--HHHHHHHHHHHHHHhCc
Confidence 6643 1 1 12456666677666653
No 278
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=31.51 E-value=6e+02 Score=26.22 Aligned_cols=46 Identities=11% Similarity=0.027 Sum_probs=28.1
Q ss_pred CEEEEEEeC-CCC--hHHHHH----HHHHcCCCcEEEecCCCCcccHHHHHhcccEEEee
Q 011969 317 RLLFIITGK-GPD--KESYEE----KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCL 369 (474)
Q Consensus 317 ~~~l~ivG~-g~~--~~~~~~----~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~ 369 (474)
.+++.+++. ... .+.+.+ .+++.|. ++.+ ..++.+.+..||++...
T Consensus 199 g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~-~~~~------~~d~~ea~~~aDvvy~~ 251 (335)
T PRK04523 199 GMDVTLLCPTPDYILDERYMDWAEQNAAESGG-SLTV------SHDIDSAYAGADVVYAK 251 (335)
T ss_pred CCEEEEECCchhhCCCHHHHHHHHHHHHHcCC-eEEE------EcCHHHHhCCCCEEEec
Confidence 478999986 211 122332 3344442 4443 37788999999999983
No 279
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=30.58 E-value=5.4e+02 Score=25.37 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=35.7
Q ss_pred cEEEeeccCCCCCCCchHHHHHHhcCCcEEEe-cccccccccccCCcEEEeC---CHHHHHHHHHHHHh
Q 011969 364 DLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV-SYSCIEELVKVDKNGLLFS---SSSELADQLLMLFK 428 (474)
Q Consensus 364 dv~v~~~~~s~~e~~p~kv~Eama~G~PVia~-~~~~~~e~v~~~~~G~l~~---~~~~la~~i~~l~~ 428 (474)
|++|.+ ...|.. .+++||.-+++|+|+. |..+.++++ -+-++ |.-.-.+.+..+++
T Consensus 175 D~vvvl---n~~e~~-sAilEA~K~~IPTIgIVDtN~~P~li-----TYpVPaNDDs~~sv~f~~~l~k 234 (251)
T KOG0832|consen 175 DLVVVL---NPEENH-SAILEAAKMAIPTIGIVDTNCNPELI-----TYPVPANDDSPASVEFILNLLK 234 (251)
T ss_pred ceeEec---Cccccc-HHHHHHHHhCCCeEEEecCCCCccce-----eeccCCCCCcHHHHHHHHHHHH
Confidence 888883 444433 4999999999999996 555555554 23333 34444555666655
No 280
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=30.13 E-value=1.2e+02 Score=28.93 Aligned_cols=57 Identities=19% Similarity=0.059 Sum_probs=37.6
Q ss_pred CcEEEecCCCCcc---cHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc
Q 011969 342 KRVAFRTMWLSAE---DYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 398 (474)
Q Consensus 342 ~~V~f~g~~v~~~---~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~ 398 (474)
++|.|.|..+|.+ +..+.++.||++|+.-++..-.....-+-++...|.|++..+..
T Consensus 132 P~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~ 191 (206)
T cd01410 132 DTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQ 191 (206)
T ss_pred CcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCC
Confidence 5788888766644 56667778999999633333232333344677899999987643
No 281
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=29.26 E-value=1.7e+02 Score=29.35 Aligned_cols=110 Identities=17% Similarity=0.199 Sum_probs=53.6
Q ss_pred EEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCCCC------------cceeccCCeEEEEeecCCCCCCCCCchhH
Q 011969 9 VVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPH------------AAILEHPSIHIHTMTQWPTIPRGLPKVLK 76 (474)
Q Consensus 9 i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~------------~~~~~~~gi~i~~~~~~~~~~~~~~~~~~ 76 (474)
|-..+..|-|.=+......+.++ |+.|-|++-+.+.|. .+...++++-+..+++ . ..+..+..
T Consensus 34 iTG~PGaGKSTli~~l~~~~~~~-g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~at--R--G~lGGls~ 108 (266)
T PF03308_consen 34 ITGPPGAGKSTLIDALIRELRER-GKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMAT--R--GSLGGLSR 108 (266)
T ss_dssp EEE-TTSSHHHHHHHHHHHHHHT-T--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE-------SSHHHHHH
T ss_pred eeCCCCCcHHHHHHHHHHHHhhc-CCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCc--C--CCCCCccH
Confidence 33333444444555667778876 999999995544332 1334578999999982 1 11222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCch
Q 011969 77 PVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFG 138 (474)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~ 138 (474)
........+ +...+|+|++-+...-..-+ -....-..-+++..-+.+
T Consensus 109 ~t~~~v~ll------------~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~G 155 (266)
T PF03308_consen 109 ATRDAVRLL------------DAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLG 155 (266)
T ss_dssp HHHHHHHHH------------HHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTC
T ss_pred hHHHHHHHH------------HHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCc
Confidence 222222222 22789999997643222221 123344455555555554
No 282
>PRK06932 glycerate dehydrogenase; Provisional
Probab=28.95 E-value=1.8e+02 Score=29.70 Aligned_cols=81 Identities=11% Similarity=0.023 Sum_probs=56.2
Q ss_pred CCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCC------CCcccHHHHHhcccEEEe--eccCCCCCCCchHHHHHHh
Q 011969 316 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW------LSAEDYPLLLGSADLGVC--LHTSSSGLDLPMKVVDMFG 387 (474)
Q Consensus 316 ~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~------v~~~~~~~~l~~adv~v~--~~~~s~~e~~p~kv~Eama 387 (474)
..-++-|+|-|.--..+-+.++.+|. +|...... ....++..+++.||++++ |.++....-++-..++.|-
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~fg~-~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk 224 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQALGM-KVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMK 224 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCC
Confidence 45689999999766667777777775 44443320 113468899999999997 3333333447889999998
Q ss_pred cCCcEEEecc
Q 011969 388 CGLPVCAVSY 397 (474)
Q Consensus 388 ~G~PVia~~~ 397 (474)
-|.-+|-+.-
T Consensus 225 ~ga~lIN~aR 234 (314)
T PRK06932 225 PTAFLINTGR 234 (314)
T ss_pred CCeEEEECCC
Confidence 8887777643
No 283
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=28.91 E-value=2.1e+02 Score=30.15 Aligned_cols=82 Identities=12% Similarity=0.002 Sum_probs=53.6
Q ss_pred CCCEEEEEEeCCCChHHHHHHHHHcCCCcEEEec------CCCCcccHHHHHhcccEEE--eeccCC----CCCCCchHH
Q 011969 315 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRT------MWLSAEDYPLLLGSADLGV--CLHTSS----SGLDLPMKV 382 (474)
Q Consensus 315 ~~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g------~~v~~~~~~~~l~~adv~v--~~~~~s----~~e~~p~kv 382 (474)
..+.++-|+|-|.--..+.+.++.+|.+-+.+-. ......++..+++.||+.+ +|.+++ ...-++...
T Consensus 114 L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~ 193 (378)
T PRK15438 114 LHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKL 193 (378)
T ss_pred cCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHH
Confidence 4567899999997767788888888863332211 1012346889999999999 555553 112255577
Q ss_pred HHHHhcCCcEEEec
Q 011969 383 VDMFGCGLPVCAVS 396 (474)
Q Consensus 383 ~Eama~G~PVia~~ 396 (474)
++.|.-|.-+|-+.
T Consensus 194 l~~mk~gailIN~a 207 (378)
T PRK15438 194 IRSLKPGAILINAC 207 (378)
T ss_pred HhcCCCCcEEEECC
Confidence 77777776666554
No 284
>TIGR02014 BchZ chlorophyllide reductase subunit Z. This model represents the Z subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=28.89 E-value=5.7e+02 Score=27.73 Aligned_cols=141 Identities=13% Similarity=0.059 Sum_probs=69.8
Q ss_pred CCEEEEEEeCCCChHHHHHHHH-HcCCC-cEEEecCC---CCcccHHHHHhcccEEEeeccCCCCCCCchH-HHHHHhcC
Q 011969 316 PRLLFIITGKGPDKESYEEKIR-RLRLK-RVAFRTMW---LSAEDYPLLLGSADLGVCLHTSSSGLDLPMK-VVDMFGCG 389 (474)
Q Consensus 316 ~~~~l~ivG~g~~~~~~~~~~~-~l~l~-~V~f~g~~---v~~~~~~~~l~~adv~v~~~~~s~~e~~p~k-v~Eama~G 389 (474)
...++.|+|+......+-+... ++|.+ .+...+.. -+..++.+.+.....-++. .++.| + .+.-...+
T Consensus 279 ~~k~vaI~gd~d~~~gl~~fL~~ElGm~~~~~~t~~v~~~~D~~~i~~~i~~~~p~ll~--Gss~e----r~~~a~~~~~ 352 (468)
T TIGR02014 279 GTARFGIVASETYARGIRHVLEDELGLPCLFSLARKAGSKTDNNAVRKEIVQKQPLVLY--GSMNE----KIYLAEADAK 352 (468)
T ss_pred CCceEEEEcCHHHHHHHHHHHHHHCCCceEEEeecceeecCCHHHHHHHHhhcCCCEEE--EChHh----HHHHHhcCCC
Confidence 3457789998766666777666 89984 22222220 2567888888874333331 22222 2 22213457
Q ss_pred CcEEEecccc-cccccccCCcEEE-eC---C-HHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Q 011969 390 LPVCAVSYSC-IEELVKVDKNGLL-FS---S-SSELADQLLM-LFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAK 462 (474)
Q Consensus 390 ~PVia~~~~~-~~e~v~~~~~G~l-~~---~-~~~la~~i~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 462 (474)
+|+|....+. +.+.+.. ..++ +. . .+++.++|.+ |++-++...+..+.-...+ .......|+.+.+..++
T Consensus 353 ~plIr~gfP~~i~dr~~~--~p~~GY~Ga~~ll~~I~N~l~d~l~~~~~~~~~~~~~~~~~~-~~~~~~~w~~~a~~~l~ 429 (468)
T TIGR02014 353 SRFIPASFPGAIIRRATG--TPFMGYSGATWLVQEVCNALFDTLFNILPITRRQDAAAATPS-RMHDPLPWDPEANAILD 429 (468)
T ss_pred CCeEEecCCcchhhhcCC--CceeechhHHHHHHHHHHHHHHhhhhhcCCcccccccccccc-cccCCCCCCHHHHHHHH
Confidence 7998877764 3443322 2222 22 1 4455554443 3333332211111111111 11234578888877777
Q ss_pred HHH
Q 011969 463 PLI 465 (474)
Q Consensus 463 ~~~ 465 (474)
++.
T Consensus 430 ~~~ 432 (468)
T TIGR02014 430 RIV 432 (468)
T ss_pred hhh
Confidence 663
No 285
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=28.89 E-value=6e+02 Score=25.44 Aligned_cols=127 Identities=10% Similarity=0.065 Sum_probs=81.8
Q ss_pred CCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHH
Q 011969 256 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYE 333 (474)
Q Consensus 256 ~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~ 333 (474)
.+-|++++.--+.....|++.+++.++.. .+.=+|+-+-|. .+.+.
T Consensus 93 ~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~--------------------------------GvdGlivpDLP~ee~~~~~ 140 (265)
T COG0159 93 VKVPIVLMTYYNPIFNYGIEKFLRRAKEA--------------------------------GVDGLLVPDLPPEESDELL 140 (265)
T ss_pred CCCCEEEEEeccHHHHhhHHHHHHHHHHc--------------------------------CCCEEEeCCCChHHHHHHH
Confidence 45577787888888899998887777653 345566666543 35688
Q ss_pred HHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeecc--CCCCCCCc--hHHHHH---Hh--cCCcEEEec----cccc
Q 011969 334 EKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHT--SSSGLDLP--MKVVDM---FG--CGLPVCAVS----YSCI 400 (474)
Q Consensus 334 ~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~--~s~~e~~p--~kv~Ea---ma--~G~PVia~~----~~~~ 400 (474)
+.++++|++.|.+...--+.+.+..+.+.++=|+...+ ...|...+ ..+-+. .- +++||+.-- -...
T Consensus 141 ~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~ 220 (265)
T COG0159 141 KAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQA 220 (265)
T ss_pred HHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHH
Confidence 89999999999998875667888888888865555321 22332222 222222 22 589998742 2233
Q ss_pred ccccccCCcEEEeCC
Q 011969 401 EELVKVDKNGLLFSS 415 (474)
Q Consensus 401 ~e~v~~~~~G~l~~~ 415 (474)
.++. ....|+++.+
T Consensus 221 ~~v~-~~ADGVIVGS 234 (265)
T COG0159 221 AQVA-EAADGVIVGS 234 (265)
T ss_pred HHHH-HhCCeEEEcH
Confidence 3333 3377888876
No 286
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=28.75 E-value=2.4e+02 Score=29.02 Aligned_cols=109 Identities=19% Similarity=0.180 Sum_probs=67.2
Q ss_pred CCCEEE--EEEeCCCC-----hHHHHHHHHHcCCCcEEEecCCCCcccHHH----HHhcccEEEeeccCCCCCCCchHHH
Q 011969 315 YPRLLF--IITGKGPD-----KESYEEKIRRLRLKRVAFRTMWLSAEDYPL----LLGSADLGVCLHTSSSGLDLPMKVV 383 (474)
Q Consensus 315 ~~~~~l--~ivG~g~~-----~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~----~l~~adv~v~~~~~s~~e~~p~kv~ 383 (474)
.|+++= ++.+.+.. .+++++.++..|++-+...- -+..|++. +....|+...|......-++...+-
T Consensus 156 ~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v--~~~ndi~~a~~~l~g~~d~i~~p~dn~i~s~~~~l~~ 233 (322)
T COG2984 156 LPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAV--TSVNDIPRAVQALLGKVDVIYIPTDNLIVSAIESLLQ 233 (322)
T ss_pred CCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEec--CcccccHHHHHHhcCCCcEEEEecchHHHHHHHHHHH
Confidence 566654 45665542 26778888888886555542 13444444 3466799999744333345667889
Q ss_pred HHHhcCCcEEEecccccccccccCCcEEEeCCHH----HHHHHHHHHHhC
Q 011969 384 DMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSS----ELADQLLMLFKG 429 (474)
Q Consensus 384 Eama~G~PVia~~~~~~~e~v~~~~~G~l~~~~~----~la~~i~~l~~~ 429 (474)
+|...++|+++++.+ .|+.|..--+--|-. .-++...+++++
T Consensus 234 ~a~~~kiPli~sd~~----~V~~Ga~aA~gvdy~~~G~qtg~~v~~ILkG 279 (322)
T COG2984 234 VANKAKIPLIASDTS----SVKEGALAALGVDYKDLGKQTGEMVVKILKG 279 (322)
T ss_pred HHHHhCCCeecCCHH----HHhcCcceeeccCHHHHHHHHHHHHHHHHcC
Confidence 999999999998753 354554433322422 344446777764
No 287
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=28.27 E-value=2.3e+02 Score=28.80 Aligned_cols=81 Identities=12% Similarity=0.070 Sum_probs=55.3
Q ss_pred CCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCC-------CCcccHHHHHhcccEEEe--eccCCCCCCCchHHHHHH
Q 011969 316 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW-------LSAEDYPLLLGSADLGVC--LHTSSSGLDLPMKVVDMF 386 (474)
Q Consensus 316 ~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~-------v~~~~~~~~l~~adv~v~--~~~~s~~e~~p~kv~Eam 386 (474)
.+-++-|+|-|.--.++-+.++.+|. +|...... +...++..+++.||+.++ |.++....-++-..++.|
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~M 222 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLL 222 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhC
Confidence 45689999998766667777777775 44443321 123478999999999987 333333344777888888
Q ss_pred hcCCcEEEecc
Q 011969 387 GCGLPVCAVSY 397 (474)
Q Consensus 387 a~G~PVia~~~ 397 (474)
--|.-+|-+.-
T Consensus 223 k~~a~lIN~aR 233 (311)
T PRK08410 223 KDGAILINVGR 233 (311)
T ss_pred CCCeEEEECCC
Confidence 88877776543
No 288
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=27.95 E-value=1.5e+02 Score=25.09 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=40.1
Q ss_pred EEEEEeCCCChH---HHHHHHHHcCCCcEEEecCCCCcccHH---HHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcE
Q 011969 319 LFIITGKGPDKE---SYEEKIRRLRLKRVAFRTMWLSAEDYP---LLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPV 392 (474)
Q Consensus 319 ~l~ivG~g~~~~---~~~~~~~~l~l~~V~f~g~~v~~~~~~---~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PV 392 (474)
++.++|.|.... .+......++. ++.+... .+... ..+..-|++++...+......-..+-.|-..|.||
T Consensus 2 ~I~i~G~G~S~~~a~~~~~~l~~~g~-~~~~~~~---~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~v 77 (128)
T cd05014 2 KVVVTGVGKSGHIARKIAATLSSTGT-PAFFLHP---TEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPI 77 (128)
T ss_pred eEEEEeCcHhHHHHHHHHHHhhcCCC-ceEEccc---chhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeE
Confidence 468899886543 33333333343 4444432 22222 33466788888522222222334555566779999
Q ss_pred EEecc
Q 011969 393 CAVSY 397 (474)
Q Consensus 393 ia~~~ 397 (474)
|+-..
T Consensus 78 i~iT~ 82 (128)
T cd05014 78 IAITG 82 (128)
T ss_pred EEEeC
Confidence 98654
No 289
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=27.88 E-value=5.1e+02 Score=24.30 Aligned_cols=93 Identities=13% Similarity=0.068 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCCcEE-EecCCCCcccHHHHHh-----cccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccc
Q 011969 330 ESYEEKIRRLRLKRVA-FRTMWLSAEDYPLLLG-----SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEEL 403 (474)
Q Consensus 330 ~~~~~~~~~l~l~~V~-f~g~~v~~~~~~~~l~-----~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~ 403 (474)
..+++.+++++..... +.+. -+.+.....+. ..|..++. +.........+-++...|+|||..+.. +.
T Consensus 18 ~g~~~~a~~~g~~~~~~~~~~-~d~~~q~~~i~~~i~~~~d~Iiv~--~~~~~~~~~~l~~~~~~gIpvv~~d~~---~~ 91 (257)
T PF13407_consen 18 KGAKAAAKELGYEVEIVFDAQ-NDPEEQIEQIEQAISQGVDGIIVS--PVDPDSLAPFLEKAKAAGIPVVTVDSD---EA 91 (257)
T ss_dssp HHHHHHHHHHTCEEEEEEEST-TTHHHHHHHHHHHHHTTESEEEEE--SSSTTTTHHHHHHHHHTTSEEEEESST---HH
T ss_pred HHHHHHHHHcCCEEEEeCCCC-CCHHHHHHHHHHHHHhcCCEEEec--CCCHHHHHHHHHHHhhcCceEEEEecc---cc
Confidence 4467777888774333 3444 33343333333 36877763 344444566788888899999998866 22
Q ss_pred cccCCcEEEeCCH----HHHHHHHHHHHh
Q 011969 404 VKVDKNGLLFSSS----SELADQLLMLFK 428 (474)
Q Consensus 404 v~~~~~G~l~~~~----~~la~~i~~l~~ 428 (474)
........+-.|. ..+++.+.+...
T Consensus 92 ~~~~~~~~v~~d~~~~G~~~a~~l~~~~~ 120 (257)
T PF13407_consen 92 PDSPRAAYVGTDNYEAGKLAAEYLAEKLG 120 (257)
T ss_dssp TTSTSSEEEEE-HHHHHHHHHHHHHHHHT
T ss_pred ccccceeeeeccHHHHHHHHHHHHHHHhc
Confidence 2233344444443 344444444443
No 290
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=27.71 E-value=1.4e+02 Score=29.49 Aligned_cols=57 Identities=21% Similarity=0.124 Sum_probs=37.6
Q ss_pred CcEEEecCCCCcc---cHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc
Q 011969 342 KRVAFRTMWLSAE---DYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 398 (474)
Q Consensus 342 ~~V~f~g~~v~~~---~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~ 398 (474)
++|.|.|.-+|.+ .....++.||++++.-++-.-.....-+-+|...|.|+|..+..
T Consensus 181 P~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~ 240 (260)
T cd01409 181 PDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIG 240 (260)
T ss_pred CCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCC
Confidence 5788887766643 35566778999999633333232223445688899999998854
No 291
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=27.67 E-value=2e+02 Score=29.01 Aligned_cols=84 Identities=11% Similarity=0.101 Sum_probs=48.9
Q ss_pred EEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCCcc-----------cHHHHHhcccEEEeeccCCC----------CC
Q 011969 318 LLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAE-----------DYPLLLGSADLGVCLHTSSS----------GL 376 (474)
Q Consensus 318 ~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~-----------~~~~~l~~adv~v~~~~~s~----------~e 376 (474)
.++.++|+....-++-+...+.|. .|...|. +.+ .....+..||+.++|..++. ..
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~-~v~~~g~--~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~ 79 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGA-KVSLVGF--DQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNE 79 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCC-EEEEEec--cccccccCCceeeccHHHHhccCCEEEECCccccCCceeecccccc
Confidence 567788854433344444555564 4555554 222 23567899999999744331 11
Q ss_pred C--CchHHHHHHhcCCcEEEec-cccccccc
Q 011969 377 D--LPMKVVDMFGCGLPVCAVS-YSCIEELV 404 (474)
Q Consensus 377 ~--~p~kv~Eama~G~PVia~~-~~~~~e~v 404 (474)
. +....++.|.-|..+++.. .+.+.+..
T Consensus 80 ~~~~~~~~l~~l~~~~~v~~G~~~~~~~~~~ 110 (296)
T PRK08306 80 KLVLTEELLELTPEHCTIFSGIANPYLKELA 110 (296)
T ss_pred CCcchHHHHHhcCCCCEEEEecCCHHHHHHH
Confidence 1 2347899999998777643 23344444
No 292
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=27.54 E-value=4.2e+02 Score=25.87 Aligned_cols=66 Identities=14% Similarity=0.031 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCC-------CCCCCchHHHHHHhcCCcEEEecccc
Q 011969 330 ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-------SGLDLPMKVVDMFGCGLPVCAVSYSC 399 (474)
Q Consensus 330 ~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s-------~~e~~p~kv~Eama~G~PVia~~~~~ 399 (474)
+.+++..+++|.. +..+-. .++..+.+..||+.+++--.+ ...++-..+-|+...|+|++.+..|.
T Consensus 51 ~~~~~af~~lG~~-v~~l~~---~~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGA 123 (233)
T PRK05282 51 AKVAEALAPLGIE-VTGIHR---VADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGA 123 (233)
T ss_pred HHHHHHHHHCCCE-EEEecc---chhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHH
Confidence 3455666777764 444433 366778899999888731111 11234445778999999999998654
No 293
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=27.48 E-value=1.2e+02 Score=30.78 Aligned_cols=31 Identities=29% Similarity=0.512 Sum_probs=22.6
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 011969 6 RACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYG 42 (474)
Q Consensus 6 ~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~ 42 (474)
+++|+..|.+|. ..|..|++. ||+|+++...
T Consensus 4 kI~IiG~G~mG~-----~~A~~L~~~-G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGC-----YLGGRLAAA-GADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHH-----HHHHHHHhc-CCcEEEEecH
Confidence 588888776652 346678886 9999998753
No 294
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=26.91 E-value=2e+02 Score=31.77 Aligned_cols=83 Identities=17% Similarity=0.159 Sum_probs=51.7
Q ss_pred CCEEEEEEeCCCC-hHHHHHHHHHc---CC-CcEEEecCCCCcccHHH----HHhcccEEEeeccCCCC--CCCchHHHH
Q 011969 316 PRLLFIITGKGPD-KESYEEKIRRL---RL-KRVAFRTMWLSAEDYPL----LLGSADLGVCLHTSSSG--LDLPMKVVD 384 (474)
Q Consensus 316 ~~~~l~ivG~g~~-~~~~~~~~~~l---~l-~~V~f~g~~v~~~~~~~----~l~~adv~v~~~~~s~~--e~~p~kv~E 384 (474)
..+++-++|+-.+ .+.+....+.+ +. .++.+...|++.+++.. .+..+|..++|--+... ++.-..+-.
T Consensus 288 ~~v~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~~~~g~i~ai~~ 367 (525)
T TIGR00337 288 HEVTIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGERGVEGKILAIKY 367 (525)
T ss_pred CCcEEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCChhhcChHHHHHH
Confidence 3589999997533 34455554444 44 25555566787777743 47789999996433221 222234556
Q ss_pred HHhcCCcEEEeccc
Q 011969 385 MFGCGLPVCAVSYS 398 (474)
Q Consensus 385 ama~G~PVia~~~~ 398 (474)
+...++|+++...|
T Consensus 368 a~e~~iP~LGIClG 381 (525)
T TIGR00337 368 ARENNIPFLGICLG 381 (525)
T ss_pred HHHcCCCEEEEcHH
Confidence 66799999998755
No 295
>PLN02928 oxidoreductase family protein
Probab=26.87 E-value=2.1e+02 Score=29.65 Aligned_cols=81 Identities=15% Similarity=0.090 Sum_probs=53.6
Q ss_pred CCCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCC-----------------------CCcccHHHHHhcccEEEee--
Q 011969 315 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW-----------------------LSAEDYPLLLGSADLGVCL-- 369 (474)
Q Consensus 315 ~~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~-----------------------v~~~~~~~~l~~adv~v~~-- 369 (474)
..+-++.|+|-|.--..+-+.++.+|. +|...... .+..++..+++.||++++.
T Consensus 157 l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lP 235 (347)
T PLN02928 157 LFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCT 235 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCC
Confidence 345689999999776667777777775 44443220 1234778999999999983
Q ss_pred ccCCCCCCCchHHHHHHhcCCcEEEec
Q 011969 370 HTSSSGLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 370 ~~~s~~e~~p~kv~Eama~G~PVia~~ 396 (474)
.++....-+.-..++.|.-|.-+|-+.
T Consensus 236 lt~~T~~li~~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 236 LTKETAGIVNDEFLSSMKKGALLVNIA 262 (347)
T ss_pred CChHhhcccCHHHHhcCCCCeEEEECC
Confidence 222233336668888887776666553
No 296
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=26.85 E-value=1.5e+02 Score=25.77 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=36.2
Q ss_pred EEEEEeCC----CChHHHHHHHHHcCCCc-----------------EEEecCCCCcccHHHHHhcccEEEee
Q 011969 319 LFIITGKG----PDKESYEEKIRRLRLKR-----------------VAFRTMWLSAEDYPLLLGSADLGVCL 369 (474)
Q Consensus 319 ~l~ivG~g----~~~~~~~~~~~~l~l~~-----------------V~f~g~~v~~~~~~~~l~~adv~v~~ 369 (474)
.++++|.| ...+++++.+++++++- +-+.|. ........++..||+.++.
T Consensus 14 P~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~-~~~~~~~~~l~~aDlvl~i 84 (137)
T PF00205_consen 14 PVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGL-FGSPAANEALEQADLVLAI 84 (137)
T ss_dssp EEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCG-GSCHHHHHHHHHSSEEEEE
T ss_pred EEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCc-cCCHHHHHHhcCCCEEEEE
Confidence 58889976 34588999999988632 333333 4567888999999999995
No 297
>PRK15482 transcriptional regulator MurR; Provisional
Probab=26.76 E-value=3.2e+02 Score=27.02 Aligned_cols=94 Identities=18% Similarity=0.135 Sum_probs=46.6
Q ss_pred EEEEEeCCCCh---HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEe
Q 011969 319 LFIITGKGPDK---ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 395 (474)
Q Consensus 319 ~l~ivG~g~~~---~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~ 395 (474)
++.|+|.|... ..+......+|. ++.+....-........+..-|+++....+......-..+-.|-..|.|||+.
T Consensus 137 ~I~i~G~G~S~~~A~~l~~~l~~~g~-~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~I 215 (285)
T PRK15482 137 FIQITGLGGSALVGRDLSFKLMKIGY-RVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAI 215 (285)
T ss_pred eeEEEEeChhHHHHHHHHHHHHhCCC-eeEEeccHhHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 57899988654 333333334443 45543210011222334566799888522222222223444455779999997
Q ss_pred cccccccccccCCcEEEe
Q 011969 396 SYSCIEELVKVDKNGLLF 413 (474)
Q Consensus 396 ~~~~~~e~v~~~~~G~l~ 413 (474)
.......+......-+.+
T Consensus 216 T~~~~s~la~~ad~~l~~ 233 (285)
T PRK15482 216 TSLADSPLRRLAHFTLDT 233 (285)
T ss_pred eCCCCCchHHhCCEEEEc
Confidence 544434443333333433
No 298
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=26.66 E-value=3.9e+02 Score=26.71 Aligned_cols=81 Identities=17% Similarity=0.065 Sum_probs=47.4
Q ss_pred CcEEEecCCCCccc---HHHHHhcccEEEeeccCCCCCCCch-H-HHHHHhcCCcEEEecccccccccccCCcEEEeC-C
Q 011969 342 KRVAFRTMWLSAED---YPLLLGSADLGVCLHTSSSGLDLPM-K-VVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS-S 415 (474)
Q Consensus 342 ~~V~f~g~~v~~~~---~~~~l~~adv~v~~~~~s~~e~~p~-k-v~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~-~ 415 (474)
++|.+.|..+|.+. ....+..+|++|+.-++... .|. . +-.+...|.|+|..+..... .+....+.+. +
T Consensus 191 P~Vv~FgE~lp~~~~~~a~~~~~~~DlllvvGTSl~V--~p~~~~~~~a~~~g~~~i~IN~~~t~---~~~~~~~~i~g~ 265 (285)
T PRK05333 191 PDVVFFGENVPRERVAAARAALDAADAVLVVGSSLMV--YSGYRFCVWAAQQGKPIAALNLGRTR---ADPLLTLKVEAS 265 (285)
T ss_pred CCEEEcCCCCCHHHHHHHHHHHhcCCEEEEECcCcee--cchhhhHHHHHHCCCeEEEECCCCCC---CCcceeEEEeCC
Confidence 57888887677544 45567889999995322222 222 2 23455678999999854321 1222344443 6
Q ss_pred HHHHHHHHHHHH
Q 011969 416 SSELADQLLMLF 427 (474)
Q Consensus 416 ~~~la~~i~~l~ 427 (474)
..+....|.+.+
T Consensus 266 ~~evL~~l~~~l 277 (285)
T PRK05333 266 CAQALAALVARL 277 (285)
T ss_pred HHHHHHHHHHHh
Confidence 666666665544
No 299
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=26.63 E-value=5.4e+02 Score=25.75 Aligned_cols=70 Identities=21% Similarity=0.297 Sum_probs=51.0
Q ss_pred CCEEEEEEeCCCCh--HHHHHHHHHcCC--CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCc
Q 011969 316 PRLLFIITGKGPDK--ESYEEKIRRLRL--KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLP 391 (474)
Q Consensus 316 ~~~~l~ivG~g~~~--~~~~~~~~~l~l--~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~P 391 (474)
+-+.+++.-..... -.+.+.++.+|+ .+..|.++ +....|+...++-+++ +... ..+-+|+.+|.|
T Consensus 35 ~~VEVVllSRNspdTGlRv~nSI~hygL~ItR~~ft~G----~~~~~Yl~af~v~LFL--San~----~DV~~Ai~~G~~ 104 (264)
T PF06189_consen 35 PLVEVVLLSRNSPDTGLRVFNSIRHYGLDITRAAFTGG----ESPYPYLKAFNVDLFL--SANE----DDVQEAIDAGIP 104 (264)
T ss_pred CceEEEEEecCCHHHHHHHHHhHHHhCCcceeeeecCC----CCHHHHHHHhCCceEe--eCCH----HHHHHHHHcCCC
Confidence 56888888765433 356677888888 58999987 7788888886666663 2332 378999999999
Q ss_pred EEEe
Q 011969 392 VCAV 395 (474)
Q Consensus 392 Via~ 395 (474)
--..
T Consensus 105 Aa~v 108 (264)
T PF06189_consen 105 AATV 108 (264)
T ss_pred cEEe
Confidence 7665
No 300
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=26.61 E-value=3.3e+02 Score=26.55 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=61.0
Q ss_pred EEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHHHHHcC
Q 011969 261 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLR 340 (474)
Q Consensus 261 ~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~~~l~ 340 (474)
++++.|.+..-+.-..|++--..+..-|+.+ .++-++-++. |..+......++++
T Consensus 92 lllCTG~F~~l~~~~~lleP~ril~~lV~al-----------------------~~~~~vGViv--P~~eQ~~~~~~kW~ 146 (221)
T PF07302_consen 92 LLLCTGEFPGLTARNPLLEPDRILPPLVAAL-----------------------VGGHQVGVIV--PLPEQIAQQAEKWQ 146 (221)
T ss_pred EEeccCCCCCCCCCcceeehHHhHHHHHHHh-----------------------cCCCeEEEEe--cCHHHHHHHHHHHH
Confidence 4556666553322222556555555555444 3445776776 44444454445543
Q ss_pred C--CcEEEecC--CC-Cccc---HHHHHh--cccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec
Q 011969 341 L--KRVAFRTM--WL-SAED---YPLLLG--SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 341 l--~~V~f~g~--~v-~~~~---~~~~l~--~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~ 396 (474)
. ..+.+... +. +.++ ...-++ .||+.|+ ...|...-++=.=+-+.|+||+-++
T Consensus 147 ~l~~~~~~a~asPy~~~~~~l~~Aa~~L~~~gadlIvL---DCmGYt~~~r~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 147 PLGNPVVVAAASPYEGDEEELAAAARELAEQGADLIVL---DCMGYTQEMRDIVQRALGKPVLLSR 209 (221)
T ss_pred hcCCCeEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEE---ECCCCCHHHHHHHHHHhCCCEEeHH
Confidence 2 34444322 11 1222 344555 7999999 6666656666666778999999886
No 301
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=26.53 E-value=3.5e+02 Score=25.85 Aligned_cols=34 Identities=26% Similarity=0.189 Sum_probs=19.4
Q ss_pred EEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 011969 9 VVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYG 42 (474)
Q Consensus 9 i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~ 42 (474)
.+++|.=|+..-|.+....|.+...-.-.|++..
T Consensus 42 lVvlGSGGHT~EMlrLl~~l~~~y~~r~yI~a~t 75 (211)
T KOG3339|consen 42 LVVLGSGGHTGEMLRLLEALQDLYSPRSYIAADT 75 (211)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhcCceEEEEecC
Confidence 3455545677778887777755522233444444
No 302
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=26.25 E-value=2.1e+02 Score=28.29 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEec
Q 011969 6 RACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAY 41 (474)
Q Consensus 6 ~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~ 41 (474)
+++|+..|.+| ...|..|++. ||+|.+++.
T Consensus 2 kI~IiG~G~iG-----~~~a~~L~~~-g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVG-----GTFGGRLLEA-GRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHH-----HHHHHHHHHC-CCceEEEec
Confidence 37777777654 2346678886 999999986
No 303
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=25.88 E-value=1.8e+02 Score=32.55 Aligned_cols=122 Identities=18% Similarity=0.161 Sum_probs=76.9
Q ss_pred HhhhcCCccc-cCCCEEEEEEeCCCChHHHHHHHHH---cCCC----cEEEecCCCCcccHHHHHhcccEEEeeccCCCC
Q 011969 304 LKEISDGKQY-LYPRLLFIITGKGPDKESYEEKIRR---LRLK----RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSG 375 (474)
Q Consensus 304 ~~~~~~~~~~-~~~~~~l~ivG~g~~~~~~~~~~~~---l~l~----~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~ 375 (474)
|+.+.-|+.. ..+.-++.|++-|.....-.+.+++ .|+. +-.|.-+ ++.+-+..+.+..+++|..-....-
T Consensus 487 ~~~~~~Gk~~i~~~G~~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkP-lD~~ll~~La~~h~~~vtlEe~~~~ 565 (627)
T COG1154 487 LEPLEIGKGELLKEGEKVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKP-LDEALLLELAKSHDLVVTLEENVVD 565 (627)
T ss_pred cccccccceEEEecCCcEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCC-CCHHHHHHHHhhcCeEEEEecCccc
Confidence 5556655431 2334456667766655444444444 4552 5667766 7888899999999999986444445
Q ss_pred CCCchHHHHHHhcC---CcEEEecccccccccccCCcEEEeC----CHHHHHHHHHHHHh
Q 011969 376 LDLPMKVVDMFGCG---LPVCAVSYSCIEELVKVDKNGLLFS----SSSELADQLLMLFK 428 (474)
Q Consensus 376 e~~p~kv~Eama~G---~PVia~~~~~~~e~v~~~~~G~l~~----~~~~la~~i~~l~~ 428 (474)
-|||..+.|+++.- +||. +.+-..+++.++...-+.. |.+.++..|..++.
T Consensus 566 GG~Gs~v~efl~~~~~~~~v~--~lglpd~fi~hg~~~el~~~~gLd~~~i~~~i~~~l~ 623 (627)
T COG1154 566 GGFGSAVLEFLAAHGILVPVL--NLGLPDEFIDHGSPEELLAELGLDAEGIARRILEWLK 623 (627)
T ss_pred ccHHHHHHHHHHhcCCCCceE--EecCChHhhccCCHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 67999999998754 3444 3455556666665433332 56677777776665
No 304
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=25.79 E-value=2e+02 Score=24.56 Aligned_cols=72 Identities=11% Similarity=0.068 Sum_probs=43.8
Q ss_pred EEEEeCCCCh----HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEe
Q 011969 320 FIITGKGPDK----ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 395 (474)
Q Consensus 320 l~ivG~g~~~----~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~ 395 (474)
+++++.|-.. ..+++.++..|.+-...- ++..++..++..+|++++- |-...-++..-=.+--.|+||-..
T Consensus 5 lLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A---~s~~e~~~~~~~~DvvLlG--PQv~y~~~~~~~~~~~~giPV~vI 79 (102)
T COG1440 5 LLVCAAGMSTSLLVTKMKKAAESKGKDVTIEA---YSETELSEYIDNADVVLLG--PQVRYMLKQLKEAAEEKGIPVEVI 79 (102)
T ss_pred EEEecCCCcHHHHHHHHHHHHHhCCCceEEEE---echhHHHHhhhcCCEEEEC--hHHHHHHHHHHHHhcccCCCeEEe
Confidence 4555555443 556777777776533333 5689999999999999983 222222332222233456798887
Q ss_pred c
Q 011969 396 S 396 (474)
Q Consensus 396 ~ 396 (474)
+
T Consensus 80 ~ 80 (102)
T COG1440 80 D 80 (102)
T ss_pred C
Confidence 5
No 305
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=25.77 E-value=2.8e+02 Score=26.46 Aligned_cols=82 Identities=7% Similarity=-0.016 Sum_probs=47.7
Q ss_pred EEEEEEeCCCCh-HHHHHHHHHcCCC--cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEE
Q 011969 318 LLFIITGKGPDK-ESYEEKIRRLRLK--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 394 (474)
Q Consensus 318 ~~l~ivG~g~~~-~~~~~~~~~l~l~--~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia 394 (474)
-.++++|..+.. .-+++.++..|-. +=.|+|+-+..... .-+..=|+.++. ....+ ...+-||..+|.|+|+
T Consensus 62 ~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~-~~~~~Pdlliv~--dp~~~--~~Av~EA~~l~IP~Ia 136 (196)
T TIGR01012 62 EDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQ-KAFREPEVVVVT--DPRAD--HQALKEASEVGIPIVA 136 (196)
T ss_pred CeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCccc-cccCCCCEEEEE--CCccc--cHHHHHHHHcCCCEEE
Confidence 368888866543 4456666666531 22455553322221 234556777772 22222 4599999999999999
Q ss_pred e-ccccccccc
Q 011969 395 V-SYSCIEELV 404 (474)
Q Consensus 395 ~-~~~~~~e~v 404 (474)
- |..+-.+.|
T Consensus 137 i~DTn~dp~~v 147 (196)
T TIGR01012 137 LCDTDNPLRYV 147 (196)
T ss_pred EeeCCCCCccC
Confidence 6 444444443
No 306
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=25.22 E-value=1.6e+02 Score=28.26 Aligned_cols=57 Identities=16% Similarity=-0.032 Sum_probs=36.3
Q ss_pred CcEEEecCCCCcc---cHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc
Q 011969 342 KRVAFRTMWLSAE---DYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 398 (474)
Q Consensus 342 ~~V~f~g~~v~~~---~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~ 398 (474)
++|.+.|..+|.+ .....+..||++|+.-++-.-.....-+-.|...|.|+|..+..
T Consensus 148 P~Vv~fgE~lp~~~~~~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~ 207 (222)
T cd01413 148 PDVVLFGEPLPQALLREAIEAAKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNAD 207 (222)
T ss_pred CCEEECCCCCCHHHHHHHHHHHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCC
Confidence 5777778767753 44556677999999633333332222333456789999988754
No 307
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=25.17 E-value=3.4e+02 Score=21.32 Aligned_cols=59 Identities=12% Similarity=0.185 Sum_probs=36.5
Q ss_pred EEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCC-CChH-HHHHHHHH
Q 011969 261 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PDKE-SYEEKIRR 338 (474)
Q Consensus 261 ~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g-~~~~-~~~~~~~~ 338 (474)
+++..|+ . ..+.+.+.+++.++..+ .|+.. +|.|.. .-.+ -..+.+++
T Consensus 6 Vli~GgR-~-~~D~~~i~~~Ld~~~~~---------------------------~~~~~-lvhGga~~GaD~iA~~wA~~ 55 (71)
T PF10686_consen 6 VLITGGR-D-WTDHELIWAALDKVHAR---------------------------HPDMV-LVHGGAPKGADRIAARWARE 55 (71)
T ss_pred EEEEECC-c-cccHHHHHHHHHHHHHh---------------------------CCCEE-EEECCCCCCHHHHHHHHHHH
Confidence 4444444 3 23778888999888774 67765 556644 2223 24556777
Q ss_pred cCCCcEEEecC
Q 011969 339 LRLKRVAFRTM 349 (474)
Q Consensus 339 l~l~~V~f~g~ 349 (474)
.+++.+.|..-
T Consensus 56 ~gv~~~~~~ad 66 (71)
T PF10686_consen 56 RGVPVIRFPAD 66 (71)
T ss_pred CCCeeEEeCcC
Confidence 78777777543
No 308
>PRK05380 pyrG CTP synthetase; Validated
Probab=25.09 E-value=3.1e+02 Score=30.34 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=48.4
Q ss_pred CCCEEEEEEeCCCC-hHHHHHHHHHc---CC-CcEEEecCCCCccc-----HHHHHhcccEEEeeccCCC--CCCCchHH
Q 011969 315 YPRLLFIITGKGPD-KESYEEKIRRL---RL-KRVAFRTMWLSAED-----YPLLLGSADLGVCLHTSSS--GLDLPMKV 382 (474)
Q Consensus 315 ~~~~~l~ivG~g~~-~~~~~~~~~~l---~l-~~V~f~g~~v~~~~-----~~~~l~~adv~v~~~~~s~--~e~~p~kv 382 (474)
...+++-++|+-.+ .+.+....+.+ +. .++...-.|++.++ ....+..+|-+++|-.... .++.-..+
T Consensus 286 ~~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~~~~~g~i~~i 365 (533)
T PRK05380 286 KGEVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGERGIEGKILAI 365 (533)
T ss_pred CCceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCccccccHHHHH
Confidence 34699999997533 33444443333 33 12222222455555 4578999999999632211 12222355
Q ss_pred HHHHhcCCcEEEeccc
Q 011969 383 VDMFGCGLPVCAVSYS 398 (474)
Q Consensus 383 ~Eama~G~PVia~~~~ 398 (474)
-+|...|+|+++...|
T Consensus 366 ~~a~e~~iPiLGIClG 381 (533)
T PRK05380 366 RYARENNIPFLGICLG 381 (533)
T ss_pred HHHHHCCCcEEEEchH
Confidence 5667789999998654
No 309
>PRK06487 glycerate dehydrogenase; Provisional
Probab=24.93 E-value=2e+02 Score=29.34 Aligned_cols=81 Identities=11% Similarity=0.006 Sum_probs=55.6
Q ss_pred CCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCC-----CCcccHHHHHhcccEEEe--eccCCCCCCCchHHHHHHhc
Q 011969 316 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW-----LSAEDYPLLLGSADLGVC--LHTSSSGLDLPMKVVDMFGC 388 (474)
Q Consensus 316 ~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~-----v~~~~~~~~l~~adv~v~--~~~~s~~e~~p~kv~Eama~ 388 (474)
.+-++-|+|-|.--..+-+.++.+|. +|...... ....++..+++.||++++ |.++....-++-..+..|--
T Consensus 147 ~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ 225 (317)
T PRK06487 147 EGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKP 225 (317)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCC
Confidence 45689999999766677777777775 44443321 123468999999999997 33333344477888999988
Q ss_pred CCcEEEecc
Q 011969 389 GLPVCAVSY 397 (474)
Q Consensus 389 G~PVia~~~ 397 (474)
|.-+|-+.-
T Consensus 226 ga~lIN~aR 234 (317)
T PRK06487 226 GALLINTAR 234 (317)
T ss_pred CeEEEECCC
Confidence 877776643
No 310
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=24.62 E-value=2e+02 Score=28.74 Aligned_cols=84 Identities=17% Similarity=0.034 Sum_probs=48.9
Q ss_pred CcEEEecCCCCcc---cHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEe-CCHH
Q 011969 342 KRVAFRTMWLSAE---DYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF-SSSS 417 (474)
Q Consensus 342 ~~V~f~g~~v~~~---~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~-~~~~ 417 (474)
++|.|.|..+|.+ .....++.||++|+.-++..-.....-+..|...|.|+|..+..... ..+....+.+ .+..
T Consensus 176 P~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~--~~~~~~d~~i~~~~~ 253 (271)
T PTZ00409 176 PNVILFGEVIPKSLLKQAEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTY--ITNRISDYHVRAKFS 253 (271)
T ss_pred CcEEEeCCcCCHHHHHHHHHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCC--CCCccccEEEECcHH
Confidence 5788888878754 44557788999999633332222222233477899999988754332 1111123444 4666
Q ss_pred HHHHHHHHHHh
Q 011969 418 ELADQLLMLFK 428 (474)
Q Consensus 418 ~la~~i~~l~~ 428 (474)
++.. +.++++
T Consensus 254 ~~~~-~~~~~~ 263 (271)
T PTZ00409 254 ELAQ-ISDILK 263 (271)
T ss_pred HHHH-HHHHhc
Confidence 6664 335554
No 311
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=24.19 E-value=5.8e+02 Score=25.54 Aligned_cols=113 Identities=19% Similarity=0.244 Sum_probs=59.1
Q ss_pred CEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCC-cccHHHHHhcccEEE--eeccCCCCC--CC-----chHHHHHH
Q 011969 317 RLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLS-AEDYPLLLGSADLGV--CLHTSSSGL--DL-----PMKVVDMF 386 (474)
Q Consensus 317 ~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~-~~~~~~~l~~adv~v--~~~~~s~~e--~~-----p~kv~Eam 386 (474)
.+.+...+.+. ...+...++.+|.+++.- |.++. .++....+...++.+ +| ++.. +. -..+-+++
T Consensus 188 ~v~~H~~E~~~-~~~~~~a~~~~g~~~i~H-~~~l~~~~~~~~~l~~~gi~v~~~P---~sn~~l~~~~~~~~~p~~~l~ 262 (325)
T cd01320 188 RLTAHAGEAGG-PESVRDALDLLGAERIGH-GIRAIEDPELVKRLAERNIPLEVCP---TSNVQTGAVKSLAEHPLRELL 262 (325)
T ss_pred ceEEeCCCCCC-HHHHHHHHHHcCCcccch-hhccCccHHHHHHHHHcCCeEEECC---CccccccccCCcccChHHHHH
Confidence 35555544332 344556666677654332 22243 345777788887777 54 3221 11 13578899
Q ss_pred hcCCcEEEecccccccccccCCcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 011969 387 GCGLPVCAVSYSCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 447 (474)
Q Consensus 387 a~G~PVia~~~~~~~e~v~~~~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 447 (474)
..|+||....-+. ++-..+ +.+.+..+...+..++.++.++..|+.+.
T Consensus 263 ~~Gv~v~lgTD~~----------~~~~~~---~~~e~~~~~~~~~l~~~el~~~~~na~~~ 310 (325)
T cd01320 263 DAGVKVTINTDDP----------TVFGTY---LTDEYELLAEAFGLTEEELKKLARNAVEA 310 (325)
T ss_pred HCCCEEEECCCCC----------cccCCC---HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999987643211 111123 22223323222223577778888888763
No 312
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=24.15 E-value=68 Score=26.77 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=45.9
Q ss_pred CCEEEEEEeCCCChHHHHHHHHHc-CC-CcEEEecCCC---------CcccHHHHHhcccEEEeeccCCCCCCCchHHH-
Q 011969 316 PRLLFIITGKGPDKESYEEKIRRL-RL-KRVAFRTMWL---------SAEDYPLLLGSADLGVCLHTSSSGLDLPMKVV- 383 (474)
Q Consensus 316 ~~~~l~ivG~g~~~~~~~~~~~~l-~l-~~V~f~g~~v---------~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~- 383 (474)
.+.+.+++|.|+... +.++.+ .- -+|+.....+ ..+++...+..+++++. .+.....-..+.
T Consensus 6 ~~~~vlVvGgG~va~---~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~---at~d~~~n~~i~~ 79 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAA---RKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFA---ATDDPELNEAIYA 79 (103)
T ss_dssp TT-EEEEEEESHHHH---HHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE----SS-HHHHHHHHH
T ss_pred CCCEEEEECCCHHHH---HHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEe---cCCCHHHHHHHHH
Confidence 456888899886432 333433 22 3777776521 01344556778888777 333322333444
Q ss_pred HHHhcCCcEEEeccccccccc
Q 011969 384 DMFGCGLPVCAVSYSCIEELV 404 (474)
Q Consensus 384 Eama~G~PVia~~~~~~~e~v 404 (474)
++-+.|+||-.++.+...+++
T Consensus 80 ~a~~~~i~vn~~D~p~~~dF~ 100 (103)
T PF13241_consen 80 DARARGILVNVVDDPELCDFI 100 (103)
T ss_dssp HHHHTTSEEEETT-CCCCSEE
T ss_pred HHhhCCEEEEECCCcCCCeEE
Confidence 444589999999877666543
No 313
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=23.95 E-value=5.3e+02 Score=25.11 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=30.1
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCC
Q 011969 6 RACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGG 43 (474)
Q Consensus 6 ~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~ 43 (474)
.+-++-.|++|.|+-+.+..-.-+.+-+.+|.|++.+.
T Consensus 4 kig~ik~GniGts~v~dlllDErAdRedi~vrVvgsga 41 (277)
T COG1927 4 KIGFIKCGNIGTSPVVDLLLDERADREDIEVRVVGSGA 41 (277)
T ss_pred EEEEEEecccchHHHHHHHHHhhcccCCceEEEecccc
Confidence 35577889999999988877666655589999998764
No 314
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=23.86 E-value=3.7e+02 Score=26.11 Aligned_cols=94 Identities=15% Similarity=0.012 Sum_probs=56.4
Q ss_pred EEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHHHHHcC
Q 011969 261 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLR 340 (474)
Q Consensus 261 ~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~~~l~ 340 (474)
-+..+|.+.....++.|++.++.... .+.+ .++|+++..
T Consensus 131 g~g~i~~l~~~~s~~el~~~vk~~l~----------------------------~~~v--r~~g~~~~~----------- 169 (241)
T PF01784_consen 131 GLGRIGELPEPMSLEELAERVKEKLG----------------------------LPGV--RVVGDPDKK----------- 169 (241)
T ss_dssp ECEEEEEEEEEEEHHHHHHHHHHHTT----------------------------SS-E--EEESCTTSE-----------
T ss_pred eeeeEeecCCCCCHHHHHHHHHHHcC----------------------------CCcE--EecCCCCCc-----------
Confidence 45667777776677777777766432 2443 444633221
Q ss_pred CCcEEEecCCCCcccHHHHH-hcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccccccc
Q 011969 341 LKRVAFRTMWLSAEDYPLLL-GSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEE 402 (474)
Q Consensus 341 l~~V~f~g~~v~~~~~~~~l-~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e 402 (474)
+++|.+.++ --.+-+..+. ..+|+++. .... --...+|...|+++|.......+.
T Consensus 170 v~rVav~~G-sG~~~i~~a~~~g~D~~IT---Gd~~---~h~~~~a~~~g~~lI~~gH~~sE~ 225 (241)
T PF01784_consen 170 VKRVAVCGG-SGGSFIEEAAEAGADVYIT---GDIK---YHDAQDAKENGINLIDAGHYASER 225 (241)
T ss_dssp EEEEEEECS-SSGGGHHHHHHTTSSEEEE---SS-----HHHHHHHHHCTSEEEE--HHHHGG
T ss_pred ccEEEEEcc-cCccHHHHHHhCCCeEEEE---ccCc---HHHHHHHHHCCCEEEEcCCHHHHH
Confidence 347888877 4455565555 47999997 2221 236789999999999876544333
No 315
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=23.82 E-value=2e+02 Score=30.05 Aligned_cols=81 Identities=14% Similarity=0.190 Sum_probs=42.2
Q ss_pred CCCEEEEEEeCCCCh-----HHHHHHHHHcCCCcEEEecCC-CCcccHHHHHhc----ccEEEeeccCCCCCCCchHHHH
Q 011969 315 YPRLLFIITGKGPDK-----ESYEEKIRRLRLKRVAFRTMW-LSAEDYPLLLGS----ADLGVCLHTSSSGLDLPMKVVD 384 (474)
Q Consensus 315 ~~~~~l~ivG~g~~~-----~~~~~~~~~l~l~~V~f~g~~-v~~~~~~~~l~~----adv~v~~~~~s~~e~~p~kv~E 384 (474)
.|+-.+++.|-|-+. ......+.+.+++|+.++... +-..-+..++.. -|-|++|-.-|.- .|.+.++
T Consensus 123 nP~k~vVF~avGFETTaP~~A~~i~~a~~~~~~Nfsvl~~hk~~ppal~~ll~~~~~~idGfi~PGHVs~I--~G~~~y~ 200 (355)
T PF01924_consen 123 NPDKEVVFFAVGFETTAPATAAAILQAKEEGIKNFSVLSSHKLTPPALEALLEDPELKIDGFICPGHVSTI--IGSEPYE 200 (355)
T ss_dssp -TTSEEEEEEEE-HHHHHHHHHHHHHHHHHT-SSEEEEEEEE-CHHHHHHHHHTT----SEEEEEHHHHHH--HCCHHHH
T ss_pred CCCCceEEEEeCcccCcHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHcCCCCCccEEEeCCeeeEE--ecchhhH
Confidence 577788888876332 344455667788888877431 223344444543 5889996333311 2346666
Q ss_pred HHh--cCCcEEEecc
Q 011969 385 MFG--CGLPVCAVSY 397 (474)
Q Consensus 385 ama--~G~PVia~~~ 397 (474)
-++ +|+|+|.+.+
T Consensus 201 ~l~~~y~~P~vIaGF 215 (355)
T PF01924_consen 201 FLAEEYGIPCVIAGF 215 (355)
T ss_dssp HHHHCC---EEEE-S
T ss_pred HHHHHcCCCeEEcCC
Confidence 654 5688887654
No 316
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=23.80 E-value=4.7e+02 Score=26.38 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=27.2
Q ss_pred cHHHHHh--cccEEEeeccCCCCCCCchHHHHHHh--cCCcEEEe
Q 011969 355 DYPLLLG--SADLGVCLHTSSSGLDLPMKVVDMFG--CGLPVCAV 395 (474)
Q Consensus 355 ~~~~~l~--~adv~v~~~~~s~~e~~p~kv~Eama--~G~PVia~ 395 (474)
++.+.++ .+|+++=. +..+--|.-.+++.|+ |..|+|-.
T Consensus 96 ~L~e~i~~v~ptvlIG~--S~~~g~ft~evv~~Ma~~~~~PIIFa 138 (279)
T cd05312 96 SLLEVVKAVKPTVLIGL--SGVGGAFTEEVVRAMAKSNERPIIFA 138 (279)
T ss_pred CHHHHHHhcCCCEEEEe--CCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 5666666 77888873 2234458888999998 57788754
No 317
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=23.68 E-value=4.4e+02 Score=23.93 Aligned_cols=74 Identities=16% Similarity=0.105 Sum_probs=40.6
Q ss_pred EEEEEeCCCChHHHHHHHHHcC-C-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec
Q 011969 319 LFIITGKGPDKESYEEKIRRLR-L-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 319 ~l~ivG~g~~~~~~~~~~~~l~-l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~ 396 (474)
++.++|.|....-.+....++. + .++.+.+. .....+..-|+++....+......-..+-.|-..|.|+|+..
T Consensus 35 ~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~-----~~~~~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT 109 (179)
T cd05005 35 RIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGE-----TTTPAIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLIT 109 (179)
T ss_pred eEEEEecChhHHHHHHHHHHHHhCCCeEEEeCC-----CCCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEE
Confidence 6788998865432233333332 1 35666543 123346678898884222222223334445667899999865
Q ss_pred c
Q 011969 397 Y 397 (474)
Q Consensus 397 ~ 397 (474)
.
T Consensus 110 ~ 110 (179)
T cd05005 110 S 110 (179)
T ss_pred C
Confidence 4
No 318
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=23.56 E-value=7.3e+02 Score=26.47 Aligned_cols=48 Identities=15% Similarity=0.040 Sum_probs=29.6
Q ss_pred ccHHHHHhcccEEEeeccCCCCCCCchH----HHHHHhcCCcEEEec--ccccc
Q 011969 354 EDYPLLLGSADLGVCLHTSSSGLDLPMK----VVDMFGCGLPVCAVS--YSCIE 401 (474)
Q Consensus 354 ~~~~~~l~~adv~v~~~~~s~~e~~p~k----v~Eama~G~PVia~~--~~~~~ 401 (474)
.++...++.||+++.---+.....+|.+ ++-|..+|+|++... .|.+.
T Consensus 109 ~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqsiGPf~ 162 (426)
T PRK10017 109 TDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHSVGPFQ 162 (426)
T ss_pred HHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCcCCCcC
Confidence 4667789999999983111111222322 445678999999875 45443
No 319
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=23.49 E-value=1.3e+02 Score=30.30 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=26.7
Q ss_pred CceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCC
Q 011969 4 RGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSK 45 (474)
Q Consensus 4 ~~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~ 45 (474)
.++++|+..|.+|++ .++.+.+. |+.|.++..+.+.
T Consensus 3 ~~~v~IvG~GliG~s-----~a~~l~~~-g~~v~i~g~d~~~ 38 (279)
T COG0287 3 SMKVGIVGLGLMGGS-----LARALKEA-GLVVRIIGRDRSA 38 (279)
T ss_pred CcEEEEECCchHHHH-----HHHHHHHc-CCeEEEEeecCcH
Confidence 456888888887754 24567775 9999999987654
No 320
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=23.35 E-value=5.9e+02 Score=23.45 Aligned_cols=39 Identities=10% Similarity=0.067 Sum_probs=25.3
Q ss_pred CCceEEEEEe-CCCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 011969 3 RRGRACVVVL-GDLGRSPRMQYQALSLARQMSLEVDVVAYG 42 (474)
Q Consensus 3 ~~~~~~i~~~-~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~ 42 (474)
++|+++|... |+.|-+.-....|..+++. |++|.+|-.+
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~-G~rVllID~D 55 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQA-GYKTLLIDGD 55 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhC-CCeEEEEeCC
Confidence 3455554433 3455555566778889986 9999998643
No 321
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=23.33 E-value=5.3e+02 Score=25.47 Aligned_cols=70 Identities=9% Similarity=-0.009 Sum_probs=41.2
Q ss_pred CCchHHHHHHhcCCcEEEecc---cccccccccCCcEEEeC-CH--HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccc
Q 011969 377 DLPMKVVDMFGCGLPVCAVSY---SCIEELVKVDKNGLLFS-SS--SELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLS 450 (474)
Q Consensus 377 ~~p~kv~Eama~G~PVia~~~---~~~~e~v~~~~~G~l~~-~~--~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~ 450 (474)
++...+.=-|+|+-.|+.... .-..+.+.....-+-+. +- ++|.++|..+.++ +++.+++.+++.+++.+
T Consensus 156 ~~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L~P~~HYvPv~~d~sd~~l~~~i~~~~~~----~~~a~~Ia~~~~~~~~~ 231 (256)
T smart00672 156 AWSVRLKYILACDSVVLKVKPEYYEFFSRGLQPWVHYWPIKSDLSCRELKEAVDWGNEH----DKKAQEIGKRGSEFIQQ 231 (256)
T ss_pred cchhhHHHHHhcCceEEEeCCchhHHHHhcccCccceEEeeCCCchhhHHHHHHHHHhC----HHHHHHHHHHHHHHHHH
Confidence 344444445566655555431 12222333444434443 33 3499999988775 88999999999887644
No 322
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=23.32 E-value=6.3e+02 Score=23.79 Aligned_cols=83 Identities=10% Similarity=0.041 Sum_probs=44.8
Q ss_pred CCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCCcccH-----------------HHHHhcccEEEeeccCCCCCCC
Q 011969 316 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDY-----------------PLLLGSADLGVCLHTSSSGLDL 378 (474)
Q Consensus 316 ~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~-----------------~~~l~~adv~v~~~~~s~~e~~ 378 (474)
.+-+++|+|.|.-....-+...+.| .+|..... -..+++ ...+..+|+++. .+.....
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~-~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlVia---aT~d~el 83 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISP-ELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIA---ATNDPRV 83 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcC-CCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEE---cCCCHHH
Confidence 3457788887765433222233333 25555543 111222 234567787777 3333334
Q ss_pred chHHHHHHhcCCcEEEecccccccc
Q 011969 379 PMKVVDMFGCGLPVCAVSYSCIEEL 403 (474)
Q Consensus 379 p~kv~Eama~G~PVia~~~~~~~e~ 403 (474)
-..+.+....|.+|...+.+...++
T Consensus 84 N~~i~~~a~~~~lvn~~d~~~~~~f 108 (202)
T PRK06718 84 NEQVKEDLPENALFNVITDAESGNV 108 (202)
T ss_pred HHHHHHHHHhCCcEEECCCCccCeE
Confidence 4466777778899888876544443
No 323
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=23.29 E-value=5.4e+02 Score=24.92 Aligned_cols=79 Identities=15% Similarity=0.050 Sum_probs=44.3
Q ss_pred CcEEEecCCCCcc---cHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEe-CCHH
Q 011969 342 KRVAFRTMWLSAE---DYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF-SSSS 417 (474)
Q Consensus 342 ~~V~f~g~~v~~~---~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~-~~~~ 417 (474)
++|.+.|..+|.+ .....++.+|+++..-++-.-.++-.-+-.+...|.|+|..+..... +.+ ...+.+ .+.+
T Consensus 154 P~Vv~fge~~~~~~~~~a~~~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~--~~~-~~~~~i~~~~~ 230 (242)
T PRK00481 154 PDVVLFGEMLPELAIDEAYEALEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTP--LDS-LFDLVIHGKAG 230 (242)
T ss_pred CCeEECCCCCCHHHHHHHHHHHhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCCC--CCC-ccCEEEECCHH
Confidence 5777777766554 34566778999999643322222222223356789999998865432 112 233444 3555
Q ss_pred HHHHHH
Q 011969 418 ELADQL 423 (474)
Q Consensus 418 ~la~~i 423 (474)
+....|
T Consensus 231 ~~l~~l 236 (242)
T PRK00481 231 EVVPEL 236 (242)
T ss_pred HHHHHH
Confidence 554444
No 324
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=23.25 E-value=1.1e+02 Score=26.60 Aligned_cols=36 Identities=25% Similarity=0.178 Sum_probs=24.8
Q ss_pred ceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 011969 5 GRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYG 42 (474)
Q Consensus 5 ~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~ 42 (474)
|++.+.+.|..+. ......+..|.+. |++|+++...
T Consensus 1 k~i~l~vtGs~~~-~~~~~~l~~L~~~-g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTGSIAA-YKAPDLLRRLKRA-GWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-SSGGG-GGHHHHHHHHHTT-TSEEEEEESH
T ss_pred CEEEEEEECHHHH-HHHHHHHHHHhhC-CCEEEEEECC
Confidence 4677777776544 3366677788886 9999999844
No 325
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=23.14 E-value=72 Score=26.95 Aligned_cols=41 Identities=10% Similarity=0.052 Sum_probs=27.3
Q ss_pred HHHHhcccEEEeeccCCC-CCCCchHHHHHHhcCCcEEEecc
Q 011969 357 PLLLGSADLGVCLHTSSS-GLDLPMKVVDMFGCGLPVCAVSY 397 (474)
Q Consensus 357 ~~~l~~adv~v~~~~~s~-~e~~p~kv~Eama~G~PVia~~~ 397 (474)
...++.||++|....... ..|...-+-=|.|.|+||++...
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~ 97 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTE 97 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEc
Confidence 366899999999755422 22233344447899999999753
No 326
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=23.01 E-value=4.1e+02 Score=27.82 Aligned_cols=104 Identities=22% Similarity=0.252 Sum_probs=73.0
Q ss_pred ChHHHHHHHHHcCC---CcEEEecCCCCcccHHHHHhc-ccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccc
Q 011969 328 DKESYEEKIRRLRL---KRVAFRTMWLSAEDYPLLLGS-ADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEEL 403 (474)
Q Consensus 328 ~~~~~~~~~~~l~l---~~V~f~g~~v~~~~~~~~l~~-adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~ 403 (474)
+..++...+..+.+ .+..|.|+ -+++.+++. .|++|. --.+-+.-.--+|++--|=|.|-.+ .+
T Consensus 236 e~~~F~~f~~~ldlvr~gkasfegR----~~~p~fla~~tD~VvS---HqWeN~lNYlY~daLyggYPLVHNS-----~~ 303 (364)
T PF10933_consen 236 EHPTFVNFANSLDLVRDGKASFEGR----FDFPDFLAQHTDAVVS---HQWENPLNYLYYDALYGGYPLVHNS-----PL 303 (364)
T ss_pred cCHHHHHHHHhhHHhhcCeeEEeee----cChHHHHHhCCCEEEe---ccccchhhHHHHHHHhcCCCcccCc-----ch
Confidence 34667777887776 47888887 566666655 799886 3344445558899999999999853 34
Q ss_pred cccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 404 VKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 404 v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
+. +.|+-.+ |..+=+++|.+.++. -....+.+++++++..
T Consensus 304 l~--d~GYYY~~fD~~~G~r~L~~A~~~---HD~~~~~Y~~ra~~~l 345 (364)
T PF10933_consen 304 LK--DVGYYYPDFDAFEGARQLLRAIRE---HDADLDAYRARARRLL 345 (364)
T ss_pred hc--ccCcCCCCccHHHHHHHHHHHHHH---ccccHHHHHHHHHHHH
Confidence 43 3888887 577778888887775 2345667777777654
No 327
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=23.00 E-value=3.3e+02 Score=28.62 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=49.6
Q ss_pred CCCEEEEEEeCCCCh-----HHHHHHHHHcCCCcEEEecCC-CCcccHHHHHhc----ccEEEeeccCCCCCCCchHHHH
Q 011969 315 YPRLLFIITGKGPDK-----ESYEEKIRRLRLKRVAFRTMW-LSAEDYPLLLGS----ADLGVCLHTSSSGLDLPMKVVD 384 (474)
Q Consensus 315 ~~~~~l~ivG~g~~~-----~~~~~~~~~l~l~~V~f~g~~-v~~~~~~~~l~~----adv~v~~~~~s~~e~~p~kv~E 384 (474)
.|+-.+++.|-|=+. ......+++.+++|+.++... +-..-+..+++. -|.|++|-.-|.- .|.+.++
T Consensus 134 nPdk~VVF~avGFETTaP~~A~~i~~a~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVs~I--~G~~~y~ 211 (369)
T TIGR00075 134 NPDRKVVFFAIGFETTAPTTASTLLSAKAEDINNFFFLSAHRLVPPAVEALLENPAVQIDAFLAPGHVSTI--IGAKPYA 211 (369)
T ss_pred CCCCeEEEEecCchhccHHHHHHHHHHHHcCCCcEEEEEeccccHHHHHHHHcCCCCCccEEEecCEEEEE--eccchhH
Confidence 578888888877332 444555677788888887431 223344445543 4889996333321 3445566
Q ss_pred HHh--cCCcEEEecc
Q 011969 385 MFG--CGLPVCAVSY 397 (474)
Q Consensus 385 ama--~G~PVia~~~ 397 (474)
.++ +|+|+|.+.+
T Consensus 212 ~l~~~y~~P~VVaGF 226 (369)
T TIGR00075 212 PIAEKYKIPIVIAGF 226 (369)
T ss_pred HHHHHcCCCeEEecc
Confidence 554 6899998754
No 328
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=22.92 E-value=2.5e+02 Score=30.71 Aligned_cols=44 Identities=23% Similarity=0.338 Sum_probs=34.4
Q ss_pred CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec
Q 011969 342 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~ 396 (474)
.+|+++.. .-+...+++..|=+.| .+++.| +||+.||+|+++-.
T Consensus 208 ~r~~ll~e---dfnpisll~~~dkvy~---~ts~mg-----feall~~~~~~~fg 251 (671)
T COG3563 208 HRVHLLAE---DFNPISLLQNVDKVYC---VTSQMG-----FEALLCGKPLTTFG 251 (671)
T ss_pred ceEEEecc---cCChHHHHHhcceeEE---eecccc-----HHHHhcCCceeeec
Confidence 58999866 5667788999998888 344422 79999999999975
No 329
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=22.75 E-value=1.8e+02 Score=33.30 Aligned_cols=106 Identities=10% Similarity=0.047 Sum_probs=68.2
Q ss_pred EEEEEeCCCChHHHHHHHHHc---CCC----cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcC--
Q 011969 319 LFIITGKGPDKESYEEKIRRL---RLK----RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG-- 389 (474)
Q Consensus 319 ~l~ivG~g~~~~~~~~~~~~l---~l~----~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G-- 389 (474)
.+.|++.|.......+.++.| |++ +..++-+ ++.+-+....+..+.+|.....+. -|||..+.|+++-.
T Consensus 569 dvtIia~G~mv~~Al~AA~~L~~~GI~vtVIdlr~ikP-LD~e~I~~~~~k~~~vVTvEE~~~-GG~Gs~Va~~l~~~~~ 646 (701)
T PLN02225 569 DVALLGYGAMVQNCLHAHSLLSKLGLNVTVADARFCKP-LDIKLVRDLCQNHKFLITVEEGCV-GGFGSHVAQFIALDGQ 646 (701)
T ss_pred CEEEEeccHHHHHHHHHHHHHHhcCCCEEEEecCCCCC-CCHHHHHHHHhhcCeEEEEcCCCC-CchHHHHHHHHHhcCC
Confidence 466777777665555555544 442 4555555 777888899999999888755555 68999999999755
Q ss_pred ----CcEEEecccccccccccCCcEEEeC----CHHHHHHHHHHHHh
Q 011969 390 ----LPVCAVSYSCIEELVKVDKNGLLFS----SSSELADQLLMLFK 428 (474)
Q Consensus 390 ----~PVia~~~~~~~e~v~~~~~G~l~~----~~~~la~~i~~l~~ 428 (474)
+||. ..+-..+++.++..-.+.. |.+.+++.+..+++
T Consensus 647 ~~~~~~v~--~iGipd~F~~~G~~~~ll~~~GLdae~I~~~i~~~l~ 691 (701)
T PLN02225 647 LDGNIKWR--PIVLPDGYIEEASPREQLALAGLTGHHIAATALSLLG 691 (701)
T ss_pred CcCCCcEE--EEecCCcCcCCCCHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 3443 2333344555554333332 67777777777664
No 330
>TIGR02105 III_needle type III secretion apparatus needle protein. Type III secretion systems translocate proteins, usually virulence factors, out across both inner and outer membranes of certain Gram-negative bacteria and further across the plasma membrane and into the cytoplasm of the host cell. This protein, termed YscF in Yersinia, and EscF, PscF, EprI, etc. in other systems, forms the needle of the injection apparatus.
Probab=22.73 E-value=3.2e+02 Score=21.77 Aligned_cols=55 Identities=16% Similarity=0.288 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhcc
Q 011969 416 SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEVISQF 472 (474)
Q Consensus 416 ~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 472 (474)
.+++.+++..+ +.++||..+-++.....++..-......--+.++.+...+++.|
T Consensus 18 ~~~l~~a~~~l--~~~~nP~~La~~Q~~~~qYs~~~n~qSs~iK~iKD~~~~Iiqki 72 (72)
T TIGR02105 18 NQAVNDSLAAL--DLPNDPELMAELQFALNQYSAYYNIESTIVKMIKDLDSGILQKF 72 (72)
T ss_pred HHHHHHHHHcc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35666666666 33458888887776666544333344444455555555555543
No 331
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=22.57 E-value=1.8e+02 Score=28.63 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=29.3
Q ss_pred cccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec
Q 011969 353 AEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 353 ~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~ 396 (474)
.+++..++..+|+++-. +......-.+..|+..|+|||.-.
T Consensus 51 ~~dl~~ll~~~DvVid~---t~p~~~~~~~~~al~~G~~vvigt 91 (257)
T PRK00048 51 TDDLEAVLADADVLIDF---TTPEATLENLEFALEHGKPLVIGT 91 (257)
T ss_pred cCCHHHhccCCCEEEEC---CCHHHHHHHHHHHHHcCCCEEEEC
Confidence 46777778789999963 222223446788999999999764
No 332
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=22.49 E-value=9.8e+02 Score=25.69 Aligned_cols=70 Identities=16% Similarity=0.102 Sum_probs=45.9
Q ss_pred EEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHHHHHHH
Q 011969 261 LVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEKIRR 338 (474)
Q Consensus 261 ~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~~~~~~ 338 (474)
.+.|+|-+...+=..-++.++..+ ..+++.+++.... .+++.+.+++
T Consensus 243 kIa~vGD~~~~rv~~Sl~~~la~~-------------------------------~G~~v~l~~P~~~~~~~~~~~~~~~ 291 (429)
T PRK11891 243 HIALVGDLKYGRTVHSLVKLLALY-------------------------------RGLKFTLVSPPTLEMPAYIVEQISR 291 (429)
T ss_pred EEEEECcCCCChHHHHHHHHHHHh-------------------------------cCCEEEEECCCccccCHHHHHHHHh
Confidence 789999775555555666665442 4578989885432 2445555555
Q ss_pred cCCCcEEEecCCCCcccHHHHHhcccEEEe
Q 011969 339 LRLKRVAFRTMWLSAEDYPLLLGSADLGVC 368 (474)
Q Consensus 339 l~l~~V~f~g~~v~~~~~~~~l~~adv~v~ 368 (474)
.|. .|.+ .+++.+.++.||++..
T Consensus 292 ~G~-~v~~------~~d~~eav~~ADVVYt 314 (429)
T PRK11891 292 NGH-VIEQ------TDDLAAGLRGADVVYA 314 (429)
T ss_pred cCC-eEEE------EcCHHHHhCCCCEEEE
Confidence 442 3443 3788899999999987
No 333
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=22.46 E-value=2.4e+02 Score=26.43 Aligned_cols=40 Identities=23% Similarity=0.195 Sum_probs=22.7
Q ss_pred CCchHHHH-HHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEee
Q 011969 17 RSPRMQYQ-ALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMT 62 (474)
Q Consensus 17 ~~~r~~~~-a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~ 62 (474)
.|++|.+. |..+.. +|++|++++....- ..+++++++.+.
T Consensus 27 SSG~~G~~lA~~~~~-~Ga~V~li~g~~~~-----~~p~~~~~i~v~ 67 (185)
T PF04127_consen 27 SSGKMGAALAEEAAR-RGAEVTLIHGPSSL-----PPPPGVKVIRVE 67 (185)
T ss_dssp --SHHHHHHHHHHHH-TT-EEEEEE-TTS---------TTEEEEE-S
T ss_pred CcCHHHHHHHHHHHH-CCCEEEEEecCccc-----cccccceEEEec
Confidence 46788865 456666 49999999966321 124578777776
No 334
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=22.39 E-value=4.6e+02 Score=24.19 Aligned_cols=68 Identities=16% Similarity=0.050 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCC
Q 011969 271 DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW 350 (474)
Q Consensus 271 ~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~ 350 (474)
.=++.+.++|+..+.. ..-+.-+++.|++.... +-+.+++.|. +|...|.
T Consensus 88 ~~Dv~laIDame~~~~---------------------------~~iD~~vLvSgD~DF~~-Lv~~lre~G~-~V~v~g~- 137 (160)
T TIGR00288 88 DVDVRMAVEAMELIYN---------------------------PNIDAVALVTRDADFLP-VINKAKENGK-ETIVIGA- 137 (160)
T ss_pred cccHHHHHHHHHHhcc---------------------------CCCCEEEEEeccHhHHH-HHHHHHHCCC-EEEEEeC-
Confidence 4588899999988743 13466677777776443 5555666664 7777774
Q ss_pred CCcccHHHHHhcccEEEee
Q 011969 351 LSAEDYPLLLGSADLGVCL 369 (474)
Q Consensus 351 v~~~~~~~~l~~adv~v~~ 369 (474)
+..--..+.+.||-|+.+
T Consensus 138 -~~~ts~~L~~acd~FI~L 155 (160)
T TIGR00288 138 -EPGFSTALQNSADIAIIL 155 (160)
T ss_pred -CCCChHHHHHhcCeEEeC
Confidence 344566788899999874
No 335
>KOG3244 consensus Protein involved in ubiquinone biosynthesis [Coenzyme transport and metabolism]
Probab=22.17 E-value=54 Score=32.03 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=41.6
Q ss_pred CCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccch
Q 011969 374 SGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARW 453 (474)
Q Consensus 374 ~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w 453 (474)
.|| ...|.+|+..+|+|+|.... ++...---.++-..+++.+- |-..+ -+.++.-.. ..-|
T Consensus 179 lGE-v~vK~~E~~q~GLPMc~lg~--------------ifG~~RL~~kqr~~l~~~yl--PWavr-~G~~ak~lm-~vYw 239 (267)
T KOG3244|consen 179 LGE-VTVKWLEGVQMGLPMCILGA--------------IFGPVRLNEKQRSRLLKHYL--PWAVR-NGLNAKPLM-NVYW 239 (267)
T ss_pred hhH-HHHHHHHHHhcCCchHHhhh--------------ccchhhcCHHHHHHHHHhhc--cHHHh-cCcCCCcch-hhHH
Confidence 344 67899999999999997531 12111112334444544432 22111 122222222 4558
Q ss_pred HHHHHHHHHHHHHHH
Q 011969 454 ATEWEEHAKPLITEV 468 (474)
Q Consensus 454 ~~~~~~~~~~~~~~~ 468 (474)
+.+||+-+..+=+|+
T Consensus 240 E~~~e~dl~~vR~el 254 (267)
T KOG3244|consen 240 ERHFEKDLEEVRKEL 254 (267)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888877776664
No 336
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=22.15 E-value=8.7e+02 Score=24.98 Aligned_cols=79 Identities=19% Similarity=0.114 Sum_probs=40.9
Q ss_pred CChhHHHHHHHHHhhCCCcEEE-EecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCH--HHHHHHHHHhCC
Q 011969 111 PSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQ--AMQHELAQNWGI 187 (474)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~-~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~--~~~~~l~~~~~~ 187 (474)
|+.-|-...-.+....|..+++ +..+. +.++.-.+. -.-+.+.+++|.+++=.. ...+.+.+...+
T Consensus 55 pSTRTR~SFe~A~~~LGg~~i~l~~~~s-------s~~kgEsl~----DTarvls~y~D~iviR~~~~~~~~~~a~~s~v 123 (332)
T PRK04284 55 DSTRTRCAFEVAAYDQGAHVTYLGPTGS-------QMGKKESTK----DTARVLGGMYDGIEYRGFSQRTVETLAEYSGV 123 (332)
T ss_pred CChhHHHHHHHHHHHcCCeEEEcCCccc-------cCCCCcCHH----HHHHHHHHhCCEEEEecCchHHHHHHHHhCCC
Confidence 4455554455555555555553 22222 234444443 233455567898887554 344455554333
Q ss_pred ceEEEeCCCCCCCCCC
Q 011969 188 KATVLYDQPPEFFHPT 203 (474)
Q Consensus 188 ~~~vi~n~~~~~f~~~ 203 (474)
+ || |+....+||+
T Consensus 124 P--VI-Na~~~~~HPt 136 (332)
T PRK04284 124 P--VW-NGLTDEDHPT 136 (332)
T ss_pred C--EE-ECCCCCCChH
Confidence 3 33 6655678887
No 337
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.06 E-value=5.3e+02 Score=25.28 Aligned_cols=87 Identities=14% Similarity=0.005 Sum_probs=48.0
Q ss_pred HHHHHhcccEEEeeccCC-CCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEeC-CHHHHHHHHHHHHhCCCCC
Q 011969 356 YPLLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS-SSSELADQLLMLFKGFPDD 433 (474)
Q Consensus 356 ~~~~l~~adv~v~~~~~s-~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~-~~~~la~~i~~l~~~~~~~ 433 (474)
-..-++.||++|. .. .-|++=.++++.. .+.+++....++..+--..+-.-|+-+ +...+++.|.+.+.. .+
T Consensus 46 d~~~l~~ADliv~---~G~~lE~~~~k~~~~~-~~~~v~~~~~~~~~~~~~~dPH~Wldp~n~~~~a~~I~~~L~~--~d 119 (264)
T cd01020 46 DAAKVSTADIVVY---NGGGYDPWMTKLLADT-KDVIVIAADLDGHDDKEGDNPHLWYDPETMSKVANALADALVK--AD 119 (264)
T ss_pred HHHHHhhCCEEEE---eCCCchHHHHHHHHhc-CCceEEeeecccccCCCCCCCceecCHhHHHHHHHHHHHHHHH--hC
Confidence 3455889999998 33 2244445666655 456676654433211001122223333 456677777766553 14
Q ss_pred HHHHHHHHHHHHHhc
Q 011969 434 SDVLKKLRNGTLEMG 448 (474)
Q Consensus 434 ~~~~~~~~~~~~~~~ 448 (474)
|+..+.+.+|+.++.
T Consensus 120 P~~~~~y~~N~~~~~ 134 (264)
T cd01020 120 PDNKKYYQANAKKFV 134 (264)
T ss_pred cccHHHHHHHHHHHH
Confidence 666677778887754
No 338
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=21.81 E-value=3e+02 Score=26.64 Aligned_cols=35 Identities=29% Similarity=0.331 Sum_probs=25.3
Q ss_pred ceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCC
Q 011969 5 GRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSK 45 (474)
Q Consensus 5 ~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~ 45 (474)
+++.|+..|++|. -.++.|++. ||||.+-+.+..+
T Consensus 2 ~~~~i~GtGniG~-----alA~~~a~a-g~eV~igs~r~~~ 36 (211)
T COG2085 2 MIIAIIGTGNIGS-----ALALRLAKA-GHEVIIGSSRGPK 36 (211)
T ss_pred cEEEEeccChHHH-----HHHHHHHhC-CCeEEEecCCChh
Confidence 4577777787763 346778886 9999998766543
No 339
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=21.63 E-value=2.7e+02 Score=28.49 Aligned_cols=80 Identities=10% Similarity=0.036 Sum_probs=53.0
Q ss_pred CCEEEEEEeCCCChHHHHHHHH-HcCCCcEEEecCCC----------CcccHHHHHhcccEEEe--eccCCCCCCCchHH
Q 011969 316 PRLLFIITGKGPDKESYEEKIR-RLRLKRVAFRTMWL----------SAEDYPLLLGSADLGVC--LHTSSSGLDLPMKV 382 (474)
Q Consensus 316 ~~~~l~ivG~g~~~~~~~~~~~-~l~l~~V~f~g~~v----------~~~~~~~~l~~adv~v~--~~~~s~~e~~p~kv 382 (474)
..-++-|+|-|.--..+.+.++ .+|. +|.+..... ...++..+++.||+.++ |.++....-++-..
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fgm-~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~ 222 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFNM-PILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQ 222 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCCC-EEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHH
Confidence 4578999999876666666665 5554 455543311 12367889999999887 33333333467788
Q ss_pred HHHHhcCCcEEEec
Q 011969 383 VDMFGCGLPVCAVS 396 (474)
Q Consensus 383 ~Eama~G~PVia~~ 396 (474)
++.|--|.-+|-+.
T Consensus 223 l~~mk~ga~lIN~a 236 (323)
T PRK15409 223 FAKMKSSAIFINAG 236 (323)
T ss_pred HhcCCCCeEEEECC
Confidence 99998887777664
No 340
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=21.53 E-value=4.1e+02 Score=27.65 Aligned_cols=104 Identities=15% Similarity=0.164 Sum_probs=57.4
Q ss_pred CCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHH
Q 011969 256 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEK 335 (474)
Q Consensus 256 ~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~ 335 (474)
+..+.+.++..+.++-.-...|++.+ .++ .|+++++++-..+....+.+
T Consensus 48 ~~~~~iW~Ha~s~Ge~~~~~~l~~~l---~~~---------------------------~~~~~i~~t~~t~~~~~~~~- 96 (425)
T PRK05749 48 PKGPLIWFHAVSVGETRAAIPLIRAL---RKR---------------------------YPDLPILVTTMTPTGSERAQ- 96 (425)
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHH---HHh---------------------------CCCCcEEEeCCCccHHHHHH-
Confidence 33444778888888655444444444 332 57777766543332222221
Q ss_pred HHHcCC-CcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec
Q 011969 336 IRRLRL-KRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 336 ~~~l~l-~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~ 396 (474)
+..+. -.+.+.+. -....+..+++. -|++++ ...+-+|+.+..+-..|+|++.++
T Consensus 97 -~~~~~~~~~~~~P~-d~~~~~~~~l~~~~Pd~v~~----~~~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 97 -ALFGDDVEHRYLPY-DLPGAVRRFLRFWRPKLVII----METELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred -HhcCCCceEEEecC-CcHHHHHHHHHhhCCCEEEE----EecchhHHHHHHHHHCCCCEEEEe
Confidence 12221 12445543 223455566654 488876 223456777888888999999864
No 341
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=21.43 E-value=1.9e+02 Score=25.30 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=13.7
Q ss_pred cccHHHHHhcccEEEe
Q 011969 353 AEDYPLLLGSADLGVC 368 (474)
Q Consensus 353 ~~~~~~~l~~adv~v~ 368 (474)
.+++..++..+|+.+.
T Consensus 66 ~~~~~~~~~~~DivI~ 81 (135)
T PF01488_consen 66 LEDLEEALQEADIVIN 81 (135)
T ss_dssp GGGHCHHHHTESEEEE
T ss_pred HHHHHHHHhhCCeEEE
Confidence 4778888999999998
No 342
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=21.34 E-value=81 Score=30.08 Aligned_cols=41 Identities=12% Similarity=-0.014 Sum_probs=26.4
Q ss_pred CCCceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCC
Q 011969 2 GRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGG 43 (474)
Q Consensus 2 ~~~~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~ 43 (474)
.+.|++.+-+.|..|........+..|.+. |++|+|+....
T Consensus 3 l~~k~IllgVTGsiaa~k~a~~lir~L~k~-G~~V~vv~T~a 43 (196)
T PRK08305 3 LKGKRIGFGLTGSHCTYDEVMPEIEKLVDE-GAEVTPIVSYT 43 (196)
T ss_pred CCCCEEEEEEcCHHHHHHHHHHHHHHHHhC-cCEEEEEECHh
Confidence 456677777767544322234556777775 99999998654
No 343
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=21.27 E-value=2.9e+02 Score=28.03 Aligned_cols=102 Identities=12% Similarity=0.090 Sum_probs=55.8
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHH
Q 011969 6 RACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPL 85 (474)
Q Consensus 6 ~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (474)
+++|+..|.+| .+.+..|++. |++|+++..... .+.....|+.+..... ...... ......
T Consensus 2 kI~IlGaGAvG-----~l~g~~L~~~-g~~V~~~~R~~~---~~~l~~~GL~i~~~~~---~~~~~~------~~~~~~- 62 (307)
T COG1893 2 KILILGAGAIG-----SLLGARLAKA-GHDVTLLVRSRR---LEALKKKGLRIEDEGG---NFTTPV------VAATDA- 62 (307)
T ss_pred eEEEECCcHHH-----HHHHHHHHhC-CCeEEEEecHHH---HHHHHhCCeEEecCCC---cccccc------ccccCh-
Confidence 57888888765 3556778886 888888886542 1223334777666652 000000 000000
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCc
Q 011969 86 IQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNF 137 (474)
Q Consensus 86 ~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~ 137 (474)
.....+|+|++..-.+....++..+...+....+|+..||-
T Consensus 63 -----------~~~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG 103 (307)
T COG1893 63 -----------EALGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNG 103 (307)
T ss_pred -----------hhcCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEEEeCC
Confidence 01157899887654333334344444445555567777776
No 344
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=21.26 E-value=4.3e+02 Score=21.02 Aligned_cols=99 Identities=19% Similarity=0.272 Sum_probs=56.4
Q ss_pred EEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHh---cCCcEEE
Q 011969 321 IITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG---CGLPVCA 394 (474)
Q Consensus 321 ~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama---~G~PVia 394 (474)
+|+.+.+. .+.+++..+..|...|.... +.++....+.. .|+.++-...+. .-+..+++.+. .++|+|.
T Consensus 2 livd~~~~~~~~l~~~l~~~~~~~v~~~~---~~~~~~~~~~~~~~d~iiid~~~~~--~~~~~~~~~i~~~~~~~~ii~ 76 (112)
T PF00072_consen 2 LIVDDDPEIRELLEKLLERAGYEEVTTAS---SGEEALELLKKHPPDLIIIDLELPD--GDGLELLEQIRQINPSIPIIV 76 (112)
T ss_dssp EEEESSHHHHHHHHHHHHHTTEEEEEEES---SHHHHHHHHHHSTESEEEEESSSSS--SBHHHHHHHHHHHTTTSEEEE
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEEC---CHHHHHHHhcccCceEEEEEeeecc--ccccccccccccccccccEEE
Confidence 44544332 24455566655544455443 36777777766 466666322222 23434444443 4788886
Q ss_pred ec-c---cccccccccCCcEEEeC--CHHHHHHHHH
Q 011969 395 VS-Y---SCIEELVKVDKNGLLFS--SSSELADQLL 424 (474)
Q Consensus 395 ~~-~---~~~~e~v~~~~~G~l~~--~~~~la~~i~ 424 (474)
.. . ....+.++.|..|++.. +.+++.++|+
T Consensus 77 ~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 77 VTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp EESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 53 2 34456667788899985 6888888764
No 345
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=21.05 E-value=3.7e+02 Score=23.00 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=25.3
Q ss_pred CCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHh
Q 011969 316 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLG 361 (474)
Q Consensus 316 ~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~ 361 (474)
+++.+++.|..+ .+ -.+..+++|++.+.-.| -+.+++..++.
T Consensus 80 ~~i~i~~GG~~~-~~-~~~~~~~~G~d~~~~~~--~~~~~~~~~~~ 121 (122)
T cd02071 80 GDILVVGGGIIP-PE-DYELLKEMGVAEIFGPG--TSIEEIIDKIR 121 (122)
T ss_pred CCCEEEEECCCC-HH-HHHHHHHCCCCEEECCC--CCHHHHHHHHh
Confidence 355655555444 33 24556778887666554 46777777764
No 346
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.05 E-value=7.8e+02 Score=26.38 Aligned_cols=147 Identities=14% Similarity=0.159 Sum_probs=0.0
Q ss_pred EEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEe-CCCCh------HHHHHHH
Q 011969 264 SSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITG-KGPDK------ESYEEKI 336 (474)
Q Consensus 264 ~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG-~g~~~------~~~~~~~ 336 (474)
|.|+-+..+-...+.+.+...++ .++.++|+- .|..+ +++.+..
T Consensus 159 ~ygsyte~dpv~ia~egv~~fKk-----------------------------e~fdvIIvDTSGRh~qe~sLfeEM~~v~ 209 (483)
T KOG0780|consen 159 FYGSYTEADPVKIASEGVDRFKK-----------------------------ENFDVIIVDTSGRHKQEASLFEEMKQVS 209 (483)
T ss_pred eEecccccchHHHHHHHHHHHHh-----------------------------cCCcEEEEeCCCchhhhHHHHHHHHHHH
Q ss_pred HHcCCCcEEEe-----cCCCCcccHHHHHhcccEEEeeccCCCCCC-CchHHHHHHhcCCcEEEecccccccccccCCcE
Q 011969 337 RRLRLKRVAFR-----TMWLSAEDYPLLLGSADLGVCLHTSSSGLD-LPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNG 410 (474)
Q Consensus 337 ~~l~l~~V~f~-----g~~v~~~~~~~~l~~adv~v~~~~~s~~e~-~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G 410 (474)
+..+.++|.|. |. --.++...+=...|+.-.-.+.=.|.. =|-++.---|.+.||+-...|.--+-++.-..-
T Consensus 210 ~ai~Pd~vi~VmDasiGQ-aae~Qa~aFk~~vdvg~vIlTKlDGhakGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk 288 (483)
T KOG0780|consen 210 KAIKPDEIIFVMDASIGQ-AAEAQARAFKETVDVGAVILTKLDGHAKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPK 288 (483)
T ss_pred hhcCCCeEEEEEeccccH-hHHHHHHHHHHhhccceEEEEecccCCCCCceeeehhhhCCCEEEEecCccccccCCCChH
Q ss_pred EEeC------CHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 011969 411 LLFS------SSSELADQLLMLFKGFPDDSDVLKKLRN 442 (474)
Q Consensus 411 ~l~~------~~~~la~~i~~l~~~~~~~~~~~~~~~~ 442 (474)
-.++ |.+.|.+.+..+..+ ++++..+++.+
T Consensus 289 ~FvsrlLGmGDi~glvek~~ev~~~--d~~el~~kl~~ 324 (483)
T KOG0780|consen 289 PFVSRLLGMGDIEGLVEKVQEVGKD--DAKELVEKLKQ 324 (483)
T ss_pred HHHHHHhccccHHHHHHHHHHHhhh--hHHHHHHHHHh
No 347
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.85 E-value=9.2e+02 Score=24.75 Aligned_cols=47 Identities=28% Similarity=0.323 Sum_probs=38.7
Q ss_pred cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc
Q 011969 343 RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS 398 (474)
Q Consensus 343 ~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~ 398 (474)
+|.-+++ +|++++..++-.||+-++ +||+ +++-|.-+|+|.+=.-++
T Consensus 239 rvvklPF-vpqddyd~LL~lcD~n~V-----RGED---SFVRAq~agkPflWHIYp 285 (370)
T COG4394 239 RVVKLPF-VPQDDYDELLWLCDFNLV-----RGED---SFVRAQLAGKPFLWHIYP 285 (370)
T ss_pred EEEEecC-CcHhHHHHHHHhccccee-----ecch---HHHHHHHcCCCcEEEecC
Confidence 4666777 999999999999999998 5553 689999999999876443
No 348
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=20.84 E-value=6.8e+02 Score=24.82 Aligned_cols=80 Identities=10% Similarity=0.025 Sum_probs=44.7
Q ss_pred EEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCc---ccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEE
Q 011969 319 LFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSA---EDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 394 (474)
Q Consensus 319 ~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~---~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia 394 (474)
.++++|..+. ..-+++.++..|- ..+.|.|++- ..+...+..=|++++. ....+ ...+.||-.+|+|||+
T Consensus 73 ~Il~Vstr~~~~~~V~k~A~~tg~--~~i~~Rw~pGtlTN~~~~~f~~P~llIV~--Dp~~d--~qAI~EA~~lnIPvIa 146 (249)
T PTZ00254 73 DVVVVSSRPYGQRAVLKFAQYTGA--SAIAGRFTPGTFTNQIQKKFMEPRLLIVT--DPRTD--HQAIREASYVNIPVIA 146 (249)
T ss_pred cEEEEEcCHHHHHHHHHHHHHhCC--eEECCcccCCCCCCccccccCCCCEEEEe--CCCcc--hHHHHHHHHhCCCEEE
Confidence 4567775554 3445666666653 3333333322 1222334556777762 22222 4589999999999999
Q ss_pred e-ccccccccc
Q 011969 395 V-SYSCIEELV 404 (474)
Q Consensus 395 ~-~~~~~~e~v 404 (474)
- |..+..+.|
T Consensus 147 l~DTds~p~~V 157 (249)
T PTZ00254 147 LCDTDSPLEYV 157 (249)
T ss_pred EecCCCCcccC
Confidence 5 444444444
No 349
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=20.77 E-value=8.4e+02 Score=24.25 Aligned_cols=61 Identities=13% Similarity=0.041 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCC-CCCchHHHHHHhcCCcEEEecc
Q 011969 330 ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSG-LDLPMKVVDMFGCGLPVCAVSY 397 (474)
Q Consensus 330 ~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~-e~~p~kv~Eama~G~PVia~~~ 397 (474)
..+++..+++|++-+. ...+.+++..+...+|++-. ++.. ..++ -+-++-..|+||+.++.
T Consensus 81 ~~l~~~~~~~Gl~~~t---e~~d~~~~~~l~~~vd~~kI---ga~~~~n~~-LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 81 KILKEVGDKYNLPVVT---EVMDTRDVEEVADYADMLQI---GSRNMQNFE-LLKEVGKTKKPILLKRG 142 (266)
T ss_pred HHHHHHHHHcCCCEEE---eeCChhhHHHHHHhCCEEEE---CcccccCHH-HHHHHhcCCCcEEEeCC
Confidence 4566667777764322 22556777777777898888 4432 2232 34555668999999864
No 350
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.69 E-value=2.4e+02 Score=28.17 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=38.6
Q ss_pred hcccEEEeeccCCCCCCCchHHHHHH---h---cCCcEEEecccccccccccCCcEEEeC-CHHHHHHHHHHHHhC
Q 011969 361 GSADLGVCLHTSSSGLDLPMKVVDMF---G---CGLPVCAVSYSCIEELVKVDKNGLLFS-SSSELADQLLMLFKG 429 (474)
Q Consensus 361 ~~adv~v~~~~~s~~e~~p~kv~Eam---a---~G~PVia~~~~~~~e~v~~~~~G~l~~-~~~~la~~i~~l~~~ 429 (474)
..+|+++.. ...| .++.|. + .++|++..+. |.-||+.+ +++++.+.+.+++++
T Consensus 34 ~~~Dlvi~i--GGDG-----T~L~a~~~~~~~~~~iPilGIN~---------G~lGFL~~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 34 KNPDIVISV--GGDG-----TLLSAFHRYENQLDKVRFVGVHT---------GHLGFYTDWRPFEVDKLVIALAKD 93 (265)
T ss_pred cCCCEEEEE--CCcH-----HHHHHHHHhcccCCCCeEEEEeC---------CCceecccCCHHHHHHHHHHHHcC
Confidence 467988874 2334 444443 3 4899999664 67799987 789999999999885
No 351
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=20.60 E-value=1.5e+03 Score=27.21 Aligned_cols=38 Identities=8% Similarity=0.063 Sum_probs=22.5
Q ss_pred HHHHHHHhhhcCEEEEeCHHHHHHHHHHhCCceEEEeC
Q 011969 157 RWIEKYYGKMANGCLCVTQAMQHELAQNWGIKATVLYD 194 (474)
Q Consensus 157 ~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~~~vi~n 194 (474)
..+++.-........+.|........+..|.++.+=|.
T Consensus 676 ~ll~~~GIp~P~~~~~~s~ee~~~~~~~igyPvVVKP~ 713 (1068)
T PRK12815 676 QLLDELGLPHVPGLTATDEEEAFAFAKRIGYPVLIRPS 713 (1068)
T ss_pred HHHHHcCcCCCCeEEeCCHHHHHHHHHhcCCCEEEEeC
Confidence 34444444566677777766655555666777555444
No 352
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=20.34 E-value=2.1e+02 Score=32.64 Aligned_cols=106 Identities=14% Similarity=0.102 Sum_probs=61.9
Q ss_pred EEEEEeCCCChHHHHHHHHHc---CCC----cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcC--
Q 011969 319 LFIITGKGPDKESYEEKIRRL---RLK----RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG-- 389 (474)
Q Consensus 319 ~l~ivG~g~~~~~~~~~~~~l---~l~----~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G-- 389 (474)
.+.|++.|.......+.++.| |++ ++.++-. ++.+-+..+.+...++|..-..+. -|+|..+.|+++-.
T Consensus 545 dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VId~~~lkP-lD~~~i~~~~k~~~~vVtvEe~~~-GG~Gs~va~~l~~~~~ 622 (677)
T PLN02582 545 RVALLGYGTAVQSCLAAASLLERHGLSATVADARFCKP-LDRALIRSLAKSHEVLITVEEGSI-GGFGSHVAQFMALDGL 622 (677)
T ss_pred CEEEEeecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCC-CCHHHHHHHhhhCCEEEEECCCCC-CcHHHHHHHHHHhcCC
Confidence 456666666655555555544 552 3344434 566667777777777776433334 67999999998664
Q ss_pred ----CcEEEecccccccccccCCcEEEeC----CHHHHHHHHHHHHh
Q 011969 390 ----LPVCAVSYSCIEELVKVDKNGLLFS----SSSELADQLLMLFK 428 (474)
Q Consensus 390 ----~PVia~~~~~~~e~v~~~~~G~l~~----~~~~la~~i~~l~~ 428 (474)
+||. ..+...+++.++....+.. |.+.+++++..+++
T Consensus 623 ~~~~~~v~--~~Gi~d~F~~~G~~~~L~~~~GL~~e~I~~~i~~~l~ 667 (677)
T PLN02582 623 LDGKLKWR--PLVLPDRYIDHGAPADQLAEAGLTPSHIAATVLNVLG 667 (677)
T ss_pred ccCCceeE--EecCCCcccCcCCHHHHHHHhCcCHHHHHHHHHHHHh
Confidence 3443 2333444554444333332 67777777777664
No 353
>PLN02670 transferase, transferring glycosyl groups
Probab=20.20 E-value=1.1e+03 Score=25.47 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=36.5
Q ss_pred CCCCceEEEEEeC--CCCCCchHHHHHHHHHhhCCCeEEEEecCCCCC-Ccce--eccCCeEEEEee
Q 011969 1 MGRRGRACVVVLG--DLGRSPRMQYQALSLARQMSLEVDVVAYGGSKP-HAAI--LEHPSIHIHTMT 62 (474)
Q Consensus 1 m~~~~~~~i~~~~--~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~-~~~~--~~~~gi~i~~~~ 62 (474)
|++....+|+... .-|+..=|...|+.|+.+ |+.|++++...... .... ....+|+++.++
T Consensus 1 ~~~~~~~HVvl~P~paqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp 66 (472)
T PLN02670 1 MKREEVLHVAMFPWLAMGHLIPFLRLSKLLAQK-GHKISFISTPRNLHRLPKIPSQLSSSITLVSFP 66 (472)
T ss_pred CCCCCCcEEEEeCChhhhHHHHHHHHHHHHHhC-CCEEEEEeCCchHHhhhhccccCCCCeeEEECC
Confidence 4444444544444 345555577788999986 99999999664210 1000 012368888887
No 354
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=20.17 E-value=5.4e+02 Score=25.91 Aligned_cols=56 Identities=9% Similarity=0.067 Sum_probs=29.8
Q ss_pred CCceEEEEEeCCCCCCchHHHHHHHHHhh-CCCeEEEEecCCCCCCcceeccCCeEEEEee
Q 011969 3 RRGRACVVVLGDLGRSPRMQYQALSLARQ-MSLEVDVVAYGGSKPHAAILEHPSIHIHTMT 62 (474)
Q Consensus 3 ~~~~~~i~~~~~~g~~~r~~~~a~~l~~~-~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~ 62 (474)
+.++++|++.|. | .-++......... .+++|.+|...... .....+..||.++.++
T Consensus 88 ~~~ri~vl~Sg~-g--~nl~al~~~~~~~~~~~~i~~visn~~~-~~~lA~~~gIp~~~~~ 144 (286)
T PRK13011 88 ARPKVLIMVSKF-D--HCLNDLLYRWRIGELPMDIVGVVSNHPD-LEPLAAWHGIPFHHFP 144 (286)
T ss_pred cCceEEEEEcCC-c--ccHHHHHHHHHcCCCCcEEEEEEECCcc-HHHHHHHhCCCEEEeC
Confidence 455677777773 2 2222222222221 35677776554332 2344566799988887
No 355
>PRK11519 tyrosine kinase; Provisional
Probab=20.15 E-value=8e+02 Score=28.05 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=22.4
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEec
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWH 135 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h 135 (474)
.++|+|++.+||.....- +..++..-...+++.-+
T Consensus 634 ~~yD~ViiDtpP~~~v~D-a~~l~~~~d~~l~Vvr~ 668 (719)
T PRK11519 634 KNYDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARY 668 (719)
T ss_pred hcCCEEEEeCCCcccchH-HHHHHHHCCeEEEEEeC
Confidence 679999999998876543 44445555444444333
No 356
>PRK06179 short chain dehydrogenase; Provisional
Probab=20.12 E-value=4.8e+02 Score=24.91 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=28.2
Q ss_pred CCCCceEEEEEeCCCCCCchHH-HHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEee
Q 011969 1 MGRRGRACVVVLGDLGRSPRMQ-YQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMT 62 (474)
Q Consensus 1 m~~~~~~~i~~~~~~g~~~r~~-~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~ 62 (474)
|.+.+.++|. |.- +.+. ..+..|+++ |++|.+++...... ....+++++...
T Consensus 1 m~~~~~vlVt--Gas---g~iG~~~a~~l~~~-g~~V~~~~r~~~~~----~~~~~~~~~~~D 53 (270)
T PRK06179 1 MSNSKVALVT--GAS---SGIGRATAEKLARA-GYRVFGTSRNPARA----APIPGVELLELD 53 (270)
T ss_pred CCCCCEEEEe--cCC---CHHHHHHHHHHHHC-CCEEEEEeCChhhc----cccCCCeeEEee
Confidence 6655544432 222 3333 346778886 99998887553221 122356655555
Done!