Query 011969
Match_columns 474
No_of_seqs 159 out of 1920
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 19:00:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c48_A Predicted glycosyltrans 100.0 1.5E-37 5.1E-42 321.7 42.9 382 3-469 19-426 (438)
2 3okp_A GDP-mannose-dependent a 100.0 3.6E-37 1.2E-41 312.8 38.9 354 1-459 1-371 (394)
3 3fro_A GLGA glycogen synthase; 100.0 3E-37 1E-41 317.3 38.1 385 6-470 4-432 (439)
4 2r60_A Glycosyl transferase, g 100.0 4.1E-36 1.4E-40 317.8 40.3 389 1-469 4-460 (499)
5 2jjm_A Glycosyl transferase, g 100.0 1.7E-35 5.7E-40 302.9 37.7 360 7-470 18-387 (394)
6 2iw1_A Lipopolysaccharide core 100.0 1E-35 3.6E-40 300.3 19.9 335 14-454 12-358 (374)
7 2gek_A Phosphatidylinositol ma 100.0 3E-34 1E-38 292.8 30.0 355 3-469 19-384 (406)
8 2qzs_A Glycogen synthase; glyc 100.0 5.3E-34 1.8E-38 299.9 30.4 292 100-470 128-478 (485)
9 1rzu_A Glycogen synthase 1; gl 100.0 4.3E-34 1.5E-38 300.6 29.3 292 99-470 128-477 (485)
10 2x6q_A Trehalose-synthase TRET 100.0 5.3E-35 1.8E-39 301.3 18.3 356 1-460 38-407 (416)
11 3s28_A Sucrose synthase 1; gly 100.0 2E-33 6.8E-38 314.6 27.9 297 100-461 406-763 (816)
12 2iuy_A Avigt4, glycosyltransfe 100.0 3.2E-32 1.1E-36 273.3 22.7 293 15-469 29-336 (342)
13 3oy2_A Glycosyltransferase B73 100.0 1.3E-31 4.3E-36 275.4 27.2 269 100-470 80-392 (413)
14 3vue_A GBSS-I, granule-bound s 100.0 1.5E-29 5.2E-34 272.4 36.0 291 100-468 152-511 (536)
15 1f0k_A MURG, UDP-N-acetylgluco 100.0 2.3E-28 7.9E-33 246.6 25.4 328 5-459 7-349 (364)
16 2x0d_A WSAF; GT4 family, trans 100.0 1.6E-29 5.6E-34 263.6 15.4 263 100-471 131-412 (413)
17 3beo_A UDP-N-acetylglucosamine 100.0 1.9E-27 6.6E-32 240.5 19.0 262 100-456 94-365 (375)
18 2hy7_A Glucuronosyltransferase 99.9 5.7E-27 2E-31 243.3 17.9 236 101-461 124-371 (406)
19 1vgv_A UDP-N-acetylglucosamine 99.9 1.7E-26 5.9E-31 234.6 17.4 269 100-458 85-367 (384)
20 2vsy_A XCC0866; transferase, g 99.9 1.6E-25 5.4E-30 240.1 17.5 260 100-472 281-563 (568)
21 3qhp_A Type 1 capsular polysac 99.9 3.8E-25 1.3E-29 199.3 16.7 161 259-457 2-164 (166)
22 2bfw_A GLGA glycogen synthase; 99.9 7.4E-24 2.5E-28 196.2 19.4 151 261-449 38-197 (200)
23 3rhz_A GTF3, nucleotide sugar 99.9 2.1E-23 7.2E-28 212.4 24.2 258 98-466 71-335 (339)
24 3nb0_A Glycogen [starch] synth 99.9 1.2E-22 4.1E-27 220.3 31.2 331 100-463 180-629 (725)
25 1v4v_A UDP-N-acetylglucosamine 99.9 3.5E-23 1.2E-27 210.1 18.0 267 100-466 90-363 (376)
26 1uqt_A Alpha, alpha-trehalose- 99.9 5.1E-22 1.8E-26 211.1 24.6 282 99-468 121-454 (482)
27 2f9f_A First mannosyl transfer 99.9 6.3E-23 2.1E-27 188.2 14.6 154 253-446 18-176 (177)
28 2xci_A KDO-transferase, 3-deox 99.9 5.9E-22 2E-26 203.6 22.6 236 100-448 110-360 (374)
29 3t5t_A Putative glycosyltransf 99.8 5E-19 1.7E-23 187.8 25.4 268 101-454 149-460 (496)
30 3s2u_A UDP-N-acetylglucosamine 99.8 8.2E-19 2.8E-23 179.6 25.2 326 5-451 3-342 (365)
31 3otg_A CALG1; calicheamicin, T 99.8 7.7E-19 2.6E-23 180.0 23.1 338 5-457 21-400 (412)
32 3dzc_A UDP-N-acetylglucosamine 99.8 6E-19 2.1E-23 182.7 19.2 257 100-448 110-382 (396)
33 3ot5_A UDP-N-acetylglucosamine 99.8 6E-18 2.1E-22 175.7 19.7 265 100-465 113-389 (403)
34 2iyf_A OLED, oleandomycin glyc 99.8 7.7E-17 2.6E-21 166.6 26.3 151 256-455 230-389 (430)
35 4fzr_A SSFS6; structural genom 99.7 1.1E-16 3.7E-21 164.0 17.7 150 256-457 225-392 (398)
36 3ia7_A CALG4; glycosysltransfe 99.7 2E-15 6.9E-20 153.6 24.7 350 4-457 4-390 (402)
37 3tsa_A SPNG, NDP-rhamnosyltran 99.7 4E-16 1.4E-20 159.0 16.8 153 256-457 216-380 (391)
38 3oti_A CALG3; calicheamicin, T 99.7 1.3E-15 4.6E-20 156.0 18.1 152 256-457 230-389 (398)
39 3rsc_A CALG2; TDP, enediyne, s 99.6 3.8E-14 1.3E-18 145.5 26.5 149 256-455 245-403 (415)
40 2p6p_A Glycosyl transferase; X 99.6 3.8E-13 1.3E-17 136.8 22.5 157 256-466 208-379 (384)
41 4hwg_A UDP-N-acetylglucosamine 99.5 5.2E-13 1.8E-17 137.9 15.7 247 100-444 93-353 (385)
42 2iya_A OLEI, oleandomycin glyc 99.5 1.3E-11 4.6E-16 127.2 26.1 142 256-448 253-404 (424)
43 2yjn_A ERYCIII, glycosyltransf 99.3 9.2E-11 3.2E-15 121.9 22.5 149 256-457 265-427 (441)
44 3h4t_A Glycosyltransferase GTF 99.3 1.6E-09 5.5E-14 111.5 26.1 139 256-449 219-367 (404)
45 3q3e_A HMW1C-like glycosyltran 99.2 1.7E-09 5.8E-14 117.0 26.4 173 260-470 442-629 (631)
46 1iir_A Glycosyltransferase GTF 99.2 1.8E-09 6.3E-14 111.2 25.4 136 257-448 237-383 (415)
47 4amg_A Snogd; transferase, pol 99.1 3.4E-10 1.2E-14 115.0 12.7 144 255-448 234-383 (400)
48 1rrv_A Glycosyltransferase GTF 99.1 2.3E-08 7.7E-13 102.9 24.3 91 342-448 286-384 (416)
49 2o6l_A UDP-glucuronosyltransfe 99.0 6.9E-10 2.3E-14 100.2 10.2 134 256-447 19-164 (170)
50 3hbf_A Flavonoid 3-O-glucosylt 98.6 1.9E-05 6.3E-10 83.1 26.0 167 256-469 271-453 (454)
51 1l5w_A Maltodextrin phosphoryl 98.5 2.1E-06 7.2E-11 94.8 18.1 183 254-469 522-731 (796)
52 2c1x_A UDP-glucose flavonoid 3 98.5 2.1E-05 7.2E-10 82.5 23.6 112 342-470 325-452 (456)
53 2pq6_A UDP-glucuronosyl/UDP-gl 98.4 3.7E-05 1.3E-09 81.0 24.6 112 342-468 353-477 (482)
54 2c4m_A Glycogen phosphorylase; 98.4 2.4E-06 8.3E-11 94.4 14.3 136 254-414 512-667 (796)
55 2vch_A Hydroquinone glucosyltr 98.3 0.00055 1.9E-08 72.1 30.6 90 346-448 342-443 (480)
56 2acv_A Triterpene UDP-glucosyl 98.3 0.0021 7.1E-08 67.3 33.1 131 256-428 274-424 (463)
57 1psw_A ADP-heptose LPS heptosy 98.0 0.00025 8.5E-09 70.5 18.5 103 256-396 178-287 (348)
58 3tov_A Glycosyl transferase fa 98.0 0.00021 7.1E-09 72.2 17.4 103 256-396 183-287 (349)
59 2gj4_A Glycogen phosphorylase, 97.8 0.0002 6.9E-09 79.5 15.6 182 254-469 546-755 (824)
60 4gyw_A UDP-N-acetylglucosamine 97.8 0.00045 1.6E-08 76.6 18.4 142 270-447 532-682 (723)
61 3l7i_A Teichoic acid biosynthe 97.6 0.00067 2.3E-08 75.0 15.6 222 124-428 433-682 (729)
62 3hbm_A UDP-sugar hydrolase; PS 96.9 0.0039 1.3E-07 61.2 10.0 66 319-397 186-252 (282)
63 2jzc_A UDP-N-acetylglucosamine 96.5 0.0018 6.2E-08 61.5 4.7 73 343-426 115-196 (224)
64 2gt1_A Lipopolysaccharide hept 94.4 0.094 3.2E-06 51.4 8.3 133 257-429 177-322 (326)
65 1ygp_A Yeast glycogen phosphor 90.9 2.7 9.3E-05 46.8 14.1 141 260-419 601-766 (879)
66 3llv_A Exopolyphosphatase-rela 68.9 22 0.00076 29.5 8.7 129 4-184 6-134 (141)
67 1id1_A Putative potassium chan 65.7 25 0.00085 29.8 8.5 66 100-184 70-136 (153)
68 3ehd_A Uncharacterized conserv 64.9 9.9 0.00034 33.8 5.7 70 358-427 65-161 (162)
69 4fyk_A Deoxyribonucleoside 5'- 63.0 47 0.0016 29.1 9.7 70 358-429 64-142 (152)
70 3fwz_A Inner membrane protein 59.9 42 0.0014 28.0 8.7 127 5-184 8-136 (140)
71 3gd5_A Otcase, ornithine carba 59.5 86 0.0029 30.8 12.0 166 110-369 57-232 (323)
72 2k6g_A Replication factor C su 59.4 35 0.0012 28.0 7.8 63 315-394 33-97 (109)
73 1zq6_A Otcase, ornithine carba 52.4 1.1E+02 0.0038 30.5 11.5 177 110-369 67-272 (359)
74 3grc_A Sensor protein, kinase; 50.8 93 0.0032 24.8 10.0 107 317-429 6-127 (140)
75 3tpf_A Otcase, ornithine carba 48.3 1.5E+02 0.0052 28.8 11.6 168 109-369 44-221 (307)
76 2ebu_A Replication factor C su 48.2 60 0.0021 26.8 7.5 73 306-395 14-88 (112)
77 4ep1_A Otcase, ornithine carba 48.2 1.9E+02 0.0064 28.6 12.3 166 110-369 79-254 (340)
78 2qsj_A DNA-binding response re 47.9 72 0.0025 26.0 8.3 108 317-429 3-124 (154)
79 1rcu_A Conserved hypothetical 46.9 15 0.00052 33.5 3.9 70 354-426 110-192 (195)
80 3hn2_A 2-dehydropantoate 2-red 46.0 36 0.0012 32.7 6.7 103 5-137 3-105 (312)
81 2zay_A Response regulator rece 45.3 1.2E+02 0.004 24.4 10.1 108 316-429 7-128 (147)
82 4ekn_B Aspartate carbamoyltran 45.0 1.1E+02 0.0038 29.8 10.0 168 110-368 49-224 (306)
83 3av3_A Phosphoribosylglycinami 45.0 41 0.0014 30.8 6.6 57 3-62 2-60 (212)
84 1oth_A Protein (ornithine tran 44.9 1.8E+02 0.006 28.5 11.5 92 111-216 56-151 (321)
85 1fy2_A Aspartyl dipeptidase; s 44.1 29 0.001 32.1 5.5 77 318-398 32-122 (229)
86 3cg4_A Response regulator rece 44.0 1.2E+02 0.0041 24.1 10.9 107 316-428 6-126 (142)
87 2f62_A Nucleoside 2-deoxyribos 43.8 48 0.0016 29.2 6.6 40 357-396 62-105 (161)
88 3cnb_A DNA-binding response re 43.1 1.2E+02 0.0042 23.9 10.1 108 317-429 8-130 (143)
89 3kcq_A Phosphoribosylglycinami 43.1 47 0.0016 30.7 6.7 59 1-62 5-65 (215)
90 3vnd_A TSA, tryptophan synthas 41.8 2E+02 0.0067 27.3 11.1 104 317-424 123-243 (267)
91 1lss_A TRK system potassium up 41.8 1.1E+02 0.0038 24.5 8.4 66 100-184 68-133 (140)
92 3to5_A CHEY homolog; alpha(5)b 41.8 87 0.003 26.2 7.8 108 316-428 11-132 (134)
93 1l7b_A DNA ligase; BRCT, autos 40.8 47 0.0016 26.4 5.5 64 315-396 8-72 (92)
94 2khz_A C-MYC-responsive protei 40.4 40 0.0014 29.6 5.5 70 358-430 73-152 (165)
95 1ml4_A Aspartate transcarbamoy 40.3 1.4E+02 0.0048 29.0 10.0 168 110-368 53-227 (308)
96 3rys_A Adenosine deaminase 1; 40.1 29 0.001 34.4 5.1 116 317-448 193-318 (343)
97 3mm4_A Histidine kinase homolo 39.8 1.2E+02 0.0041 26.6 8.9 109 316-429 60-196 (206)
98 3sds_A Ornithine carbamoyltran 39.4 2.8E+02 0.0097 27.4 12.2 180 109-368 74-264 (353)
99 3en0_A Cyanophycinase; serine 39.3 1E+02 0.0035 29.7 8.7 82 317-398 56-154 (291)
100 1k68_A Phytochrome response re 38.4 1.4E+02 0.0048 23.3 10.6 106 318-428 3-130 (140)
101 3f6c_A Positive transcription 37.5 1.5E+02 0.005 23.2 8.6 107 318-429 2-120 (134)
102 2w37_A Ornithine carbamoyltran 37.4 3.2E+02 0.011 27.1 12.8 176 107-375 73-258 (359)
103 3zqu_A Probable aromatic acid 37.3 29 0.00099 32.0 4.2 40 1-42 1-40 (209)
104 3kht_A Response regulator; PSI 37.1 1.5E+02 0.0051 23.7 8.5 107 317-428 5-127 (144)
105 4amu_A Ornithine carbamoyltran 36.9 2.7E+02 0.0091 27.8 11.5 168 109-368 79-257 (365)
106 4e7p_A Response regulator; DNA 36.9 1.7E+02 0.0057 23.7 9.2 109 316-429 19-140 (150)
107 2vxb_A DNA repair protein RHP9 36.6 33 0.0011 32.1 4.6 76 316-396 4-97 (241)
108 1jbe_A Chemotaxis protein CHEY 36.2 1.5E+02 0.0051 23.0 10.0 107 317-428 4-124 (128)
109 1pvv_A Otcase, ornithine carba 36.2 3.1E+02 0.011 26.6 12.2 166 111-370 56-231 (315)
110 3gt7_A Sensor protein; structu 36.0 1.3E+02 0.0045 24.6 8.1 107 317-429 7-127 (154)
111 2i6u_A Otcase, ornithine carba 35.7 3.1E+02 0.011 26.5 13.0 166 111-369 49-224 (307)
112 3auf_A Glycinamide ribonucleot 35.7 94 0.0032 28.8 7.6 57 3-62 21-79 (229)
113 3eul_A Possible nitrate/nitrit 35.6 1.7E+02 0.006 23.5 9.3 110 315-429 13-135 (152)
114 3tha_A Tryptophan synthase alp 35.5 2E+02 0.0068 27.1 9.9 98 317-415 116-228 (252)
115 4dad_A Putative pilus assembly 35.4 68 0.0023 25.9 6.0 110 315-429 18-141 (146)
116 3csu_A Protein (aspartate carb 34.8 1.2E+02 0.004 29.7 8.4 171 110-368 50-227 (310)
117 1vlv_A Otcase, ornithine carba 34.0 3.4E+02 0.012 26.5 12.9 168 109-369 66-243 (325)
118 2nzw_A Alpha1,3-fucosyltransfe 33.8 3.7E+02 0.013 26.8 13.0 117 317-441 181-308 (371)
119 3glr_A NAD-dependent deacetyla 33.8 1.3E+02 0.0044 29.0 8.3 100 342-446 175-278 (285)
120 3h1g_A Chemotaxis protein CHEY 33.5 1.7E+02 0.0059 22.9 9.8 108 317-429 5-127 (129)
121 1q1a_A HST2 protein; ternary c 33.4 1.2E+02 0.0042 29.0 8.2 86 342-428 175-278 (289)
122 1i1q_B Anthranilate synthase c 32.5 1.4E+02 0.0049 26.2 8.0 69 326-396 10-83 (192)
123 1qkk_A DCTD, C4-dicarboxylate 32.0 2E+02 0.0069 23.2 8.9 106 318-429 4-121 (155)
124 3nav_A Tryptophan synthase alp 32.0 3.3E+02 0.011 25.7 12.1 99 317-415 125-238 (271)
125 4had_A Probable oxidoreductase 31.8 1.7E+02 0.0057 28.1 9.1 69 315-395 46-116 (350)
126 4f3y_A DHPR, dihydrodipicolina 31.3 46 0.0016 31.8 4.7 75 318-398 8-106 (272)
127 3hzh_A Chemotaxis response reg 30.9 2E+02 0.0067 23.5 8.4 107 317-428 36-156 (157)
128 2l2q_A PTS system, cellobiose- 30.3 2E+02 0.007 22.9 8.0 90 320-428 8-104 (109)
129 2iz6_A Molybdenum cofactor car 30.2 64 0.0022 28.8 5.2 70 357-429 102-174 (176)
130 3q9l_A Septum site-determining 29.8 3E+02 0.01 24.6 10.3 28 15-43 14-41 (260)
131 3heb_A Response regulator rece 29.5 2.2E+02 0.0076 22.9 10.8 106 318-428 5-134 (152)
132 4g65_A TRK system potassium up 29.0 4.7E+02 0.016 26.5 20.0 67 360-428 298-366 (461)
133 4dzz_A Plasmid partitioning pr 28.9 84 0.0029 27.3 5.8 28 15-43 10-40 (206)
134 3jte_A Response regulator rece 28.7 2.2E+02 0.0074 22.5 9.8 106 318-429 4-123 (143)
135 3nbm_A PTS system, lactose-spe 28.7 71 0.0024 26.1 4.8 70 320-396 10-85 (108)
136 4ds3_A Phosphoribosylglycinami 27.5 1.3E+02 0.0043 27.6 6.8 58 1-62 5-64 (209)
137 3kb6_A D-lactate dehydrogenase 27.3 1.4E+02 0.0049 29.1 7.6 83 316-399 140-233 (334)
138 1eiw_A Hypothetical protein MT 27.1 47 0.0016 27.4 3.4 70 358-428 34-109 (111)
139 2wqk_A 5'-nucleotidase SURE; S 26.9 1.6E+02 0.0056 27.6 7.7 55 5-62 2-58 (251)
140 2b4a_A BH3024; flavodoxin-like 26.1 2.4E+02 0.0082 22.2 9.4 110 314-429 12-131 (138)
141 1q14_A HST2 protein; histone d 26.1 2.5E+02 0.0085 27.9 9.2 69 359-428 216-286 (361)
142 2x5n_A SPRPN10, 26S proteasome 26.0 1.1E+02 0.0037 27.3 6.0 58 4-62 106-171 (192)
143 2rjn_A Response regulator rece 25.9 2.6E+02 0.0089 22.5 8.3 108 316-429 6-126 (154)
144 3h5i_A Response regulator/sens 25.8 2.5E+02 0.0085 22.2 10.0 107 317-428 5-123 (140)
145 1m2k_A Silent information regu 25.7 2.3E+02 0.0079 26.3 8.5 77 342-423 154-236 (249)
146 2zki_A 199AA long hypothetical 25.7 43 0.0015 29.4 3.2 41 1-43 1-42 (199)
147 3nrb_A Formyltetrahydrofolate 25.5 2.9E+02 0.01 26.4 9.3 58 2-62 86-144 (287)
148 1p6q_A CHEY2; chemotaxis, sign 25.0 2.4E+02 0.0081 21.7 7.9 106 318-428 7-126 (129)
149 1e2b_A Enzyme IIB-cellobiose; 24.9 1.9E+02 0.0066 23.1 6.8 65 320-392 7-76 (106)
150 3lua_A Response regulator rece 24.9 99 0.0034 24.7 5.2 105 318-429 5-127 (140)
151 3i42_A Response regulator rece 24.7 2.4E+02 0.0082 21.7 8.2 106 318-429 4-122 (127)
152 4gxw_A Adenosine deaminase; am 24.5 3.2E+02 0.011 27.2 9.8 115 317-448 210-339 (380)
153 2v4u_A CTP synthase 2; pyrimid 24.4 57 0.0019 31.3 4.0 79 317-397 25-127 (289)
154 2qv0_A Protein MRKE; structura 24.0 2.7E+02 0.0091 22.0 9.4 107 317-428 9-126 (143)
155 1vl6_A Malate oxidoreductase; 24.0 2E+02 0.0067 29.0 8.0 76 315-394 190-291 (388)
156 3obi_A Formyltetrahydrofolate 23.9 2.9E+02 0.01 26.4 9.0 56 2-62 87-145 (288)
157 2qxy_A Response regulator; reg 23.7 1.5E+02 0.0053 23.5 6.2 105 318-429 5-121 (142)
158 2g1u_A Hypothetical protein TM 23.6 2.7E+02 0.0091 23.1 7.9 38 100-137 83-121 (155)
159 3geb_A EYES absent homolog 2; 23.5 47 0.0016 31.7 3.0 44 315-365 228-271 (274)
160 3ijp_A DHPR, dihydrodipicolina 23.5 61 0.0021 31.3 4.0 76 317-398 21-121 (288)
161 3cz5_A Two-component response 23.1 2.1E+02 0.0071 23.1 7.0 108 317-429 5-125 (153)
162 2j48_A Two-component sensor ki 22.9 1.8E+02 0.006 21.7 6.1 104 319-428 3-117 (119)
163 1mb3_A Cell division response 22.7 2.6E+02 0.0088 21.3 7.5 105 319-429 3-121 (124)
164 3sqd_A PAX-interacting protein 22.6 55 0.0019 30.1 3.4 63 316-396 15-78 (219)
165 3gl9_A Response regulator; bet 22.5 2.7E+02 0.0092 21.5 9.3 104 319-428 4-121 (122)
166 3sho_A Transcriptional regulat 22.0 3E+02 0.01 23.4 8.2 73 319-396 41-121 (187)
167 2qzj_A Two-component response 21.9 2.5E+02 0.0085 22.2 7.1 106 317-428 4-120 (136)
168 1k66_A Phytochrome response re 21.8 2.9E+02 0.01 21.6 9.4 107 317-428 6-137 (149)
169 2i2x_B MTAC, methyltransferase 21.8 4.8E+02 0.016 24.1 11.3 99 330-429 141-244 (258)
170 3iqw_A Tail-anchored protein t 21.7 1.9E+02 0.0064 28.2 7.3 27 15-42 24-53 (334)
171 3dhn_A NAD-dependent epimerase 21.6 4E+02 0.014 23.1 11.8 53 1-62 1-54 (227)
172 4fb5_A Probable oxidoreductase 21.5 1.8E+02 0.006 28.1 7.1 69 315-395 54-124 (393)
173 2ywr_A Phosphoribosylglycinami 21.3 1.8E+02 0.0062 26.5 6.6 83 4-107 1-86 (216)
174 1ma3_A SIR2-AF2, transcription 21.2 2.4E+02 0.0082 26.3 7.6 56 342-399 160-220 (253)
175 2aef_A Calcium-gated potassium 21.1 1.4E+02 0.0046 26.9 5.8 65 100-183 70-135 (234)
176 3ilh_A Two component response 21.1 3E+02 0.01 21.5 9.6 109 316-429 8-139 (146)
177 3nhm_A Response regulator; pro 21.0 2.9E+02 0.01 21.3 10.1 105 318-429 5-122 (133)
178 3l4e_A Uncharacterized peptida 20.9 1.1E+02 0.0036 27.9 4.9 63 330-397 47-121 (206)
179 3mcu_A Dipicolinate synthase, 20.8 95 0.0033 28.4 4.5 41 2-43 3-43 (207)
180 2ixd_A LMBE-related protein; h 20.8 3.3E+02 0.011 25.1 8.5 40 1-42 1-40 (242)
181 2qr3_A Two-component system re 20.8 3E+02 0.01 21.4 9.6 108 318-429 4-126 (140)
182 3eag_A UDP-N-acetylmuramate:L- 20.5 81 0.0028 30.5 4.3 52 3-59 3-54 (326)
183 3k35_A NAD-dependent deacetyla 20.3 2.9E+02 0.0098 27.0 8.1 84 342-428 183-270 (318)
184 1yc5_A NAD-dependent deacetyla 20.2 2.6E+02 0.0088 25.9 7.6 80 342-426 157-242 (246)
185 1bg6_A N-(1-D-carboxylethyl)-L 20.1 45 0.0015 32.2 2.3 36 1-42 1-36 (359)
No 1
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=1.5e-37 Score=321.68 Aligned_cols=382 Identities=17% Similarity=0.176 Sum_probs=268.3
Q ss_pred CCceEEEEEeC----------CCCCCch-HHHHHHHHHhhCCCeEEEEecCCCCCCcc-eeccCCeEEEEeecCCCCCCC
Q 011969 3 RRGRACVVVLG----------DLGRSPR-MQYQALSLARQMSLEVDVVAYGGSKPHAA-ILEHPSIHIHTMTQWPTIPRG 70 (474)
Q Consensus 3 ~~~~~~i~~~~----------~~g~~~r-~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~-~~~~~gi~i~~~~~~~~~~~~ 70 (474)
++++|+++... +.||..+ +...+..|.++ ||+|+|++......... ....+++++++++..+.....
T Consensus 19 ~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~ 97 (438)
T 3c48_A 19 SHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQ-GIEVDIYTRATRPSQGEIVRVAENLRVINIAAGPYEGLS 97 (438)
T ss_dssp CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHT-TCEEEEEEECCCGGGCSEEEEETTEEEEEECCSCSSSCC
T ss_pred chheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhc-CCEEEEEecCCCCCCcccccccCCeEEEEecCCCccccc
Confidence 44567766642 2355544 45567788886 99999999775422111 223469999998832211111
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCc
Q 011969 71 LPKVLKPVLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRS 150 (474)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~ 150 (474)
...+...+..+.+.+. ...+.+..+||+||++. .....++.++++..++|+|+++|+....... ......
T Consensus 98 ~~~~~~~~~~~~~~~~------~~~~~~~~~~Div~~~~---~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~-~~~~~~ 167 (438)
T 3c48_A 98 KEELPTQLAAFTGGML------SFTRREKVTYDLIHSHY---WLSGQVGWLLRDLWRIPLIHTAHTLAAVKNS-YRDDSD 167 (438)
T ss_dssp GGGGGGGHHHHHHHHH------HHHHHHTCCCSEEEEEH---HHHHHHHHHHHHHHTCCEEEECSSCHHHHSC-C----C
T ss_pred hhHHHHHHHHHHHHHH------HHHHhccCCCCEEEeCC---ccHHHHHHHHHHHcCCCEEEEecCCcccccc-cccccC
Confidence 1112221211111111 11122223599999997 3334445566667789999999998532110 111111
Q ss_pred hH-HHHHHHHHHHHhhhcCEEEEeCHHHHHHHHHHhCCc---eEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCc
Q 011969 151 HF-VSIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGIK---ATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGV 225 (474)
Q Consensus 151 ~~-~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~---~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~ 225 (474)
.. .....++++.+.+.+|.++++|+.+++.+.+.+|.+ +.+++|+.+ +.|.+........++++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~g~~~~k~~vi~ngvd~~~~~~~~~~~~~~~r~~~~--------- 238 (438)
T 3c48_A 168 TPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGNDRATERSRRELG--------- 238 (438)
T ss_dssp CHHHHHHHHHHHHHHHHCSEEEESSHHHHHHHHHHHCCCGGGEEECCCCCCTTTSCCC----CHHHHHHTT---------
T ss_pred CcchHHHHHHHHHHHhcCCEEEEcCHHHHHHHHHHhCCChhheEEecCCccccccCCcccchhhhhHHhcC---------
Confidence 11 233456788889999999999999999998877753 899999954 5666553333334555655
Q ss_pred cccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHh
Q 011969 226 QDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLK 305 (474)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~ 305 (474)
++++. .+++|+|++.+.||++.+++|+..+.++
T Consensus 239 ----------------------------~~~~~-~~i~~~G~~~~~Kg~~~li~a~~~l~~~------------------ 271 (438)
T 3c48_A 239 ----------------------------IPLHT-KVVAFVGRLQPFKGPQVLIKAVAALFDR------------------ 271 (438)
T ss_dssp ----------------------------CCSSS-EEEEEESCBSGGGCHHHHHHHHHHHHHH------------------
T ss_pred ----------------------------CCCCC-cEEEEEeeecccCCHHHHHHHHHHHHhh------------------
Confidence 22333 3899999999999999999999998774
Q ss_pred hhcCCccccCC--CEEEEEEeC----CCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCC
Q 011969 306 EISDGKQYLYP--RLLFIITGK----GPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDL 378 (474)
Q Consensus 306 ~~~~~~~~~~~--~~~l~ivG~----g~~~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~ 378 (474)
.| +++|+|+|+ |+..+.+++.++++++ ++|.|+|. ++.+++..+|+.||++|+ +|..|++
T Consensus 272 ---------~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~-~~~~~~~~~~~~adv~v~---ps~~e~~ 338 (438)
T 3c48_A 272 ---------DPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDP-RPPSELVAVYRAADIVAV---PSFNESF 338 (438)
T ss_dssp ---------CTTCSEEEEEECCBC------CHHHHHHHHTTCTTTEEEECC-CCHHHHHHHHHHCSEEEE---CCSCCSS
T ss_pred ---------CCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCC-CChHHHHHHHHhCCEEEE---CccccCC
Confidence 45 899999998 8888899999999998 79999998 999999999999999999 6788999
Q ss_pred chHHHHHHhcCCcEEEecccccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHH
Q 011969 379 PMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATE 456 (474)
Q Consensus 379 p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 456 (474)
|++++|||+||+|||+++.++..|++.++.+|++++ |+++++++|..++++ ++.++++++++++...+++|+..
T Consensus 339 ~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~----~~~~~~~~~~~~~~~~~~s~~~~ 414 (438)
T 3c48_A 339 GLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALATLLDD----DETRIRMGEDAVEHARTFSWAAT 414 (438)
T ss_dssp CHHHHHHHHTTCCEEEESCTTHHHHSCBTTTEEEESSCCHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCCCEEecCCCChhHHhhCCCcEEECCCCCHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999999999999999999997 799999999999994 88999999999998766888765
Q ss_pred HHHHHHHHHHHHh
Q 011969 457 WEEHAKPLITEVI 469 (474)
Q Consensus 457 ~~~~~~~~~~~~~ 469 (474)
.++ ...+++++.
T Consensus 415 ~~~-~~~~~~~~~ 426 (438)
T 3c48_A 415 AAQ-LSSLYNDAI 426 (438)
T ss_dssp HHH-HHHHHHHHH
T ss_pred HHH-HHHHHHHHh
Confidence 544 334444444
No 2
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=3.6e-37 Score=312.77 Aligned_cols=354 Identities=14% Similarity=0.104 Sum_probs=264.7
Q ss_pred CCCCceEEEEEeCCCCCCchHHHHHHHHHhh-CCCeEEEEecCCCCCC-cceeccCCeEEEEeecCCCCCCCCCchhHHH
Q 011969 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQ-MSLEVDVVAYGGSKPH-AAILEHPSIHIHTMTQWPTIPRGLPKVLKPV 78 (474)
Q Consensus 1 m~~~~~~~i~~~~~~g~~~r~~~~a~~l~~~-~g~eV~Vv~~~~~~~~-~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~ 78 (474)
|+++++++++........++....+..+++. .||+|+|++....... .......++++++++... ....+...
T Consensus 1 M~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 75 (394)
T 3okp_A 1 MSASRKTLVVTNDFPPRIGGIQSYLRDFIATQDPESIVVFASTQNAEEAHAYDKTLDYEVIRWPRSV-----MLPTPTTA 75 (394)
T ss_dssp ---CCCEEEEESCCTTSCSHHHHHHHHHHTTSCGGGEEEEEECSSHHHHHHHHTTCSSEEEEESSSS-----CCSCHHHH
T ss_pred CCCCceEEEEeCccCCccchHHHHHHHHHHHhcCCeEEEEECCCCccchhhhccccceEEEEccccc-----cccchhhH
Confidence 7777777777654332334444444555554 4999999998764321 233346689999988211 11122233
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCC-cEEEEecCchhhhhhhccCCCchHHHHHH
Q 011969 79 LLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRS-AFIVDWHNFGYTLLSLSLGRRSHFVSIYR 157 (474)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~h~~~~~~~~~~~~~~~~~~~~~~ 157 (474)
..+.+.+.+ .+||+||++.+..... ++.++++ .+. ++|+++|+..... ... ...+
T Consensus 76 ~~l~~~~~~------------~~~Dvv~~~~~~~~~~--~~~~~~~-~~~~~~i~~~h~~~~~~------~~~---~~~~ 131 (394)
T 3okp_A 76 HAMAEIIRE------------REIDNVWFGAAAPLAL--MAGTAKQ-AGASKVIASTHGHEVGW------SML---PGSR 131 (394)
T ss_dssp HHHHHHHHH------------TTCSEEEESSCTTGGG--GHHHHHH-TTCSEEEEECCSTHHHH------TTS---HHHH
T ss_pred HHHHHHHHh------------cCCCEEEECCcchHHH--HHHHHHh-cCCCcEEEEeccchhhh------hhc---chhh
Confidence 333333322 7899999988644322 2444444 455 4888999873211 111 2344
Q ss_pred HHHHHHhhhcCEEEEeCHHHHHHHHHHhCC--ceEEEeCCC-CCCCCCCChHHHHHHHHhhhhccCCCCCcccccccccc
Q 011969 158 WIEKYYGKMANGCLCVTQAMQHELAQNWGI--KATVLYDQP-PEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGM 234 (474)
Q Consensus 158 ~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~--~~~vi~n~~-~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 234 (474)
.+.+.+.+.+|.++++|+.+++.+.+.++. ++.+++|+. .+.|.+.....+..++++++
T Consensus 132 ~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~------------------ 193 (394)
T 3okp_A 132 QSLRKIGTEVDVLTYISQYTLRRFKSAFGSHPTFEHLPSGVDVKRFTPATPEDKSATRKKLG------------------ 193 (394)
T ss_dssp HHHHHHHHHCSEEEESCHHHHHHHHHHHCSSSEEEECCCCBCTTTSCCCCHHHHHHHHHHTT------------------
T ss_pred HHHHHHHHhCCEEEEcCHHHHHHHHHhcCCCCCeEEecCCcCHHHcCCCCchhhHHHHHhcC------------------
Confidence 667778899999999999999999988765 489999994 46677756656677777776
Q ss_pred CCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCcccc
Q 011969 235 EGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYL 314 (474)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (474)
++++. ..++|+|++.+.||++.+++|+..+.++
T Consensus 194 -------------------~~~~~-~~i~~~G~~~~~Kg~~~li~a~~~l~~~--------------------------- 226 (394)
T 3okp_A 194 -------------------FTDTT-PVIACNSRLVPRKGQDSLIKAMPQVIAA--------------------------- 226 (394)
T ss_dssp -------------------CCTTC-CEEEEESCSCGGGCHHHHHHHHHHHHHH---------------------------
T ss_pred -------------------CCcCc-eEEEEEeccccccCHHHHHHHHHHHHhh---------------------------
Confidence 22333 3899999999999999999999998874
Q ss_pred CCCEEEEEEeCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCC-------CCCchHHHHHH
Q 011969 315 YPRLLFIITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSG-------LDLPMKVVDMF 386 (474)
Q Consensus 315 ~~~~~l~ivG~g~~~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~-------e~~p~kv~Eam 386 (474)
.|+++|+|+|+|+..+.+++.+ .++ ++|.|.|. ++.+++..+|+.||++|+ +|.. |++|++++|||
T Consensus 227 ~~~~~l~i~G~g~~~~~l~~~~--~~~~~~v~~~g~-~~~~~~~~~~~~ad~~v~---ps~~~~~~~~~e~~~~~~~Ea~ 300 (394)
T 3okp_A 227 RPDAQLLIVGSGRYESTLRRLA--TDVSQNVKFLGR-LEYQDMINTLAAADIFAM---PARTRGGGLDVEGLGIVYLEAQ 300 (394)
T ss_dssp STTCEEEEECCCTTHHHHHHHT--GGGGGGEEEEES-CCHHHHHHHHHHCSEEEE---CCCCBGGGTBCCSSCHHHHHHH
T ss_pred CCCeEEEEEcCchHHHHHHHHH--hcccCeEEEcCC-CCHHHHHHHHHhCCEEEe---cCccccccccccccCcHHHHHH
Confidence 6899999999999998888887 555 79999998 999999999999999999 5655 99999999999
Q ss_pred hcCCcEEEecccccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcc-ccchHHHHHH
Q 011969 387 GCGLPVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGL-SARWATEWEE 459 (474)
Q Consensus 387 a~G~PVia~~~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~ 459 (474)
+||+|||+++.++..|++.++ +|++++ |+++++++|..++++ ++.++++++++++... .++|+..-++
T Consensus 301 a~G~PvI~~~~~~~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~ 371 (394)
T 3okp_A 301 ACGVPVIAGTSGGAPETVTPA-TGLVVEGSDVDKLSELLIELLDD----PIRRAAMGAAGRAHVEAEWSWEIMGER 371 (394)
T ss_dssp HTTCCEEECSSTTGGGGCCTT-TEEECCTTCHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred HcCCCEEEeCCCChHHHHhcC-CceEeCCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999999999888 999997 899999999999994 8999999999998764 4888765544
No 3
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=3e-37 Score=317.27 Aligned_cols=385 Identities=16% Similarity=0.123 Sum_probs=272.3
Q ss_pred eEEEEEeC----CCCCCch-HHHHHHHHHhhCCCeEEEEecCCCCCCcce-----------------eccCCeEEEEeec
Q 011969 6 RACVVVLG----DLGRSPR-MQYQALSLARQMSLEVDVVAYGGSKPHAAI-----------------LEHPSIHIHTMTQ 63 (474)
Q Consensus 6 ~~~i~~~~----~~g~~~r-~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~-----------------~~~~gi~i~~~~~ 63 (474)
+++++... ..||..+ +...+..|+++ ||+|+|++.......... ...+|+++++++.
T Consensus 4 kIl~v~~~~~p~~~gG~~~~~~~la~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~ 82 (439)
T 3fro_A 4 KVLLLGFEFLPVKVGGLAEALTAISEALASL-GHEVLVFTPSHGRFQGEEIGKIRVFGEEVQVKVSYEERGNLRIYRIGG 82 (439)
T ss_dssp EEEEECSCCTTSCSSSHHHHHHHHHHHHHHT-TCEEEEEEECTTCSCCEEEEEEEETTEEEEEEEEEEEETTEEEEEEES
T ss_pred EEEEEecccCCcccCCHHHHHHHHHHHHHHC-CCeEEEEecCCCCchhhhhccccccCcccceeeeeccCCCceEEEecc
Confidence 35544432 4566555 55667888886 999999997654432111 1457999999983
Q ss_pred CCCCCCC-CCchhHH-HHHHHHHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhh
Q 011969 64 WPTIPRG-LPKVLKP-VLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTL 141 (474)
Q Consensus 64 ~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~ 141 (474)
....... ....... ...+.........++..++.+..+||+||+|++ ....++.++++..++|+|+++|+.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dii~~~~~---~~~~~~~~~~~~~~~~~v~~~h~~~~~~ 159 (439)
T 3fro_A 83 GLLDSEDVYGPGWDGLIRKAVTFGRASVLLLNDLLREEPLPDVVHFHDW---HTVFAGALIKKYFKIPAVFTIHRLNKSK 159 (439)
T ss_dssp GGGGCSSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSEEEEESG---GGHHHHHHHHHHHCCCEEEEESCCCCCC
T ss_pred hhccccccccCCcchhhhhhHHHHHHHHHHHHHHhccCCCCeEEEecch---hhhhhHHHHhhccCCCEEEEeccccccc
Confidence 1100110 1101111 222222222222233333333479999999984 3444566667778999999999984211
Q ss_pred hhhcc---CCCchH-HHHHHHHHHHHhhhcCEEEEeCHHHHHHHHHHh---CCceEEEeCCC-CCCCCCC-----ChHHH
Q 011969 142 LSLSL---GRRSHF-VSIYRWIEKYYGKMANGCLCVTQAMQHELAQNW---GIKATVLYDQP-PEFFHPT-----SLEEK 208 (474)
Q Consensus 142 ~~~~~---~~~~~~-~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~---~~~~~vi~n~~-~~~f~~~-----~~~~~ 208 (474)
..... ...... ......+++...+.||.++++|+.+++.....+ ..++.+++|+. .+.|.|. ....+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~ 239 (439)
T 3fro_A 160 LPAFYFHEAGLSELAPYPDIDPEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERK 239 (439)
T ss_dssp EEHHHHHHTTCGGGCCSSEECHHHHHHHHCSEEEESCHHHHHHTHHHHGGGTTSEEECCCCCCTTTSCGGGSCSCHHHHH
T ss_pred CchHHhCccccccccccceeeHhhhhhhhccEEEecCHHHHHHHhhhhhhcCCceeecCCCCCchhcCcccccchhhhhH
Confidence 00000 000000 000015677888899999999999988855533 45699999994 4666655 23355
Q ss_pred HHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecc-cCCCHHHHHHHHHHhHHH
Q 011969 209 HELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWT-PDEDFGILLEAALMYDRR 287 (474)
Q Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~-~~k~~~~Li~a~~~l~~~ 287 (474)
..++++++ ++++ .+++|+|++. +.||++.+++|++.+.++
T Consensus 240 ~~~~~~~~-------------------------------------~~~~--~~i~~~G~~~~~~Kg~~~li~a~~~l~~~ 280 (439)
T 3fro_A 240 KSLLSKFG-------------------------------------MDEG--VTFMFIGRFDRGQKGVDVLLKAIEILSSK 280 (439)
T ss_dssp HHHHHHHT-------------------------------------CCSC--EEEEEECCSSCTTBCHHHHHHHHHHHHTS
T ss_pred HHHHHHcC-------------------------------------CCCC--cEEEEEcccccccccHHHHHHHHHHHHhc
Confidence 66777776 2233 4999999999 999999999999998762
Q ss_pred HhhhhccCCCchhhHhHhhhcCCccccC--CCEEEEEEeCCCCh--HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcc
Q 011969 288 VAAILNEDDSTNEEVFLKEISDGKQYLY--PRLLFIITGKGPDK--ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSA 363 (474)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ivG~g~~~--~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~a 363 (474)
. ++++|+|+|+|+.. +.+++.+++++ +.+.|.|. ++.+++..+|+.|
T Consensus 281 ---------------------------~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~-~~~~~~~~~~~~a 331 (439)
T 3fro_A 281 ---------------------------KEFQEMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEM-LSREFVRELYGSV 331 (439)
T ss_dssp ---------------------------GGGGGEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSC-CCHHHHHHHHTTC
T ss_pred ---------------------------ccCCCeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCC-CCHHHHHHHHHHC
Confidence 4 78999999999977 88999999998 77778776 9999999999999
Q ss_pred cEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 011969 364 DLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLR 441 (474)
Q Consensus 364 dv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~ 441 (474)
|++|+ ||..|++|++++||||||+|||+++.++..|++.++ +|++++ |+++++++|..+++. +++.+++++
T Consensus 332 dv~v~---ps~~e~~~~~~~EAma~G~Pvi~s~~~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~~---~~~~~~~~~ 404 (439)
T 3fro_A 332 DFVII---PSYFEPFGLVALEAMCLGAIPIASAVGGLRDIITNE-TGILVKAGDPGELANAILKALEL---SRSDLSKFR 404 (439)
T ss_dssp SEEEE---CBSCCSSCHHHHHHHHTTCEEEEESSTHHHHHCCTT-TCEEECTTCHHHHHHHHHHHHHH---TTTTTHHHH
T ss_pred CEEEe---CCCCCCccHHHHHHHHCCCCeEEcCCCCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHhc---CHHHHHHHH
Confidence 99999 677799999999999999999999999999999876 999997 799999999999983 377889999
Q ss_pred HHHHHhccccchHHHHHHHHHHHHHHHhh
Q 011969 442 NGTLEMGLSARWATEWEEHAKPLITEVIS 470 (474)
Q Consensus 442 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 470 (474)
+++++.+++++|+...++ ...++++++.
T Consensus 405 ~~~~~~~~~~s~~~~~~~-~~~~~~~~~~ 432 (439)
T 3fro_A 405 ENCKKRAMSFSWEKSAER-YVKAYTGSID 432 (439)
T ss_dssp HHHHHHHHTSCHHHHHHH-HHHHHHTCSC
T ss_pred HHHHHHHhhCcHHHHHHH-HHHHHHHHHH
Confidence 999988878999876655 3445555443
No 4
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=4.1e-36 Score=317.80 Aligned_cols=389 Identities=14% Similarity=0.080 Sum_probs=270.1
Q ss_pred CCCCceEEEEEeC--------------CCCCCchH-HHHHHHHHhhCCCeEEEEecCCCCCC-cc----eec---cCCeE
Q 011969 1 MGRRGRACVVVLG--------------DLGRSPRM-QYQALSLARQMSLEVDVVAYGGSKPH-AA----ILE---HPSIH 57 (474)
Q Consensus 1 m~~~~~~~i~~~~--------------~~g~~~r~-~~~a~~l~~~~g~eV~Vv~~~~~~~~-~~----~~~---~~gi~ 57 (474)
|+++.+|+++... ..||..+. ...+..|+++ ||+|+|++....... .. ... ..|++
T Consensus 4 m~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~gv~ 82 (499)
T 2r60_A 4 MTRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEM-GVQVDIITRRIKDENWPEFSGEIDYYQETNKVR 82 (499)
T ss_dssp ---CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHT-TCEEEEEEECCCBTTBGGGCCSEEECTTCSSEE
T ss_pred ccccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhc-CCeEEEEeCCCCcccccchhhhHHhccCCCCeE
Confidence 5554566666543 24555443 4456777786 999999997643211 11 111 46999
Q ss_pred EEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc-CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecC
Q 011969 58 IHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLWFLCVKI-ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHN 136 (474)
Q Consensus 58 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 136 (474)
+++++...........+...+..+ ... +...+.+. .+||+||+|.+ ....++.++++..++|+|+++|+
T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~~~---~~~----l~~~l~~~~~~~Divh~~~~---~~~~~~~~~~~~~~~p~v~~~H~ 152 (499)
T 2r60_A 83 IVRIPFGGDKFLPKEELWPYLHEY---VNK----IINFYREEGKFPQVVTTHYG---DGGLAGVLLKNIKGLPFTFTGHS 152 (499)
T ss_dssp EEEECCSCSSCCCGGGCGGGHHHH---HHH----HHHHHHHHTCCCSEEEEEHH---HHHHHHHHHHHHHCCCEEEECSS
T ss_pred EEEecCCCcCCcCHHHHHHHHHHH---HHH----HHHHHHhcCCCCCEEEEcCC---cchHHHHHHHHhcCCcEEEEccC
Confidence 999983221111111111111111 111 11122222 48999999983 33445666677778999999999
Q ss_pred chhhhhhhccC--CC-chHHH-----HHHHHHHHHhhhcCEEEEeCHHHHHHHHHH--hC-C-------ceEEEeCCC-C
Q 011969 137 FGYTLLSLSLG--RR-SHFVS-----IYRWIEKYYGKMANGCLCVTQAMQHELAQN--WG-I-------KATVLYDQP-P 197 (474)
Q Consensus 137 ~~~~~~~~~~~--~~-~~~~~-----~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~--~~-~-------~~~vi~n~~-~ 197 (474)
........... .. ..+.. ...++++.+.+.||.++++|+.+++.+.+. +| . ++.+++|+. .
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~g~~~~~~~~~ki~vi~ngvd~ 232 (499)
T 2r60_A 153 LGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYSHDLYRGAVNVEDDDKFSVIPPGVNT 232 (499)
T ss_dssp CHHHHHHTTCCCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTTSGGGTTTCCTTCGGGEEECCCCBCT
T ss_pred cccccchhhccCCCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHHHHhhhcccccccccCCCCeEEECCCcCh
Confidence 85322211100 00 11111 234567888999999999999999988876 66 3 489999994 4
Q ss_pred CCCCCCCh-HHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHH
Q 011969 198 EFFHPTSL-EEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGI 276 (474)
Q Consensus 198 ~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~ 276 (474)
+.|.+... ..+..+++++|... ..++++.+ +++|+|++.+.||++.
T Consensus 233 ~~~~~~~~~~~~~~~r~~~~~~~--------------------------------~~~~~~~~-~i~~vGrl~~~Kg~~~ 279 (499)
T 2r60_A 233 RVFDGEYGDKIKAKITKYLERDL--------------------------------GSERMELP-AIIASSRLDQKKNHYG 279 (499)
T ss_dssp TTSSSCCCHHHHHHHHHHHHHHS--------------------------------CGGGTTSC-EEEECSCCCGGGCHHH
T ss_pred hhcCccchhhhHHHHHHHhcccc--------------------------------cccCCCCc-EEEEeecCccccCHHH
Confidence 66766532 23455666655100 00113334 8999999999999999
Q ss_pred HHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCC-CEEEEEEeC--CC------C-------hHHHHHHHHHcC
Q 011969 277 LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYP-RLLFIITGK--GP------D-------KESYEEKIRRLR 340 (474)
Q Consensus 277 Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ivG~--g~------~-------~~~~~~~~~~l~ 340 (474)
+++|+..+.++ .+ .++|+|+|+ |+ . .+++++.+++++
T Consensus 280 li~a~~~l~~~---------------------------~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~ 332 (499)
T 2r60_A 280 LVEAYVQNKEL---------------------------QDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNND 332 (499)
T ss_dssp HHHHHHTCHHH---------------------------HHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh---------------------------CCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcC
Confidence 99999998763 23 368999998 44 1 678899999999
Q ss_pred C-CcEEEecCCCCcccHHHHHhcc----cEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEeC-
Q 011969 341 L-KRVAFRTMWLSAEDYPLLLGSA----DLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS- 414 (474)
Q Consensus 341 l-~~V~f~g~~v~~~~~~~~l~~a----dv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~- 414 (474)
+ ++|.|+|. ++.+++..+|+.| |++|+ ||..|+||++++||||||+|||+++.++..|++.++.+|++++
T Consensus 333 l~~~V~~~G~-v~~~~~~~~~~~a~~~~dv~v~---pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v~~~~~g~l~~~ 408 (499)
T 2r60_A 333 CRGKVSMFPL-NSQQELAGCYAYLASKGSVFAL---TSFYEPFGLAPVEAMASGLPAVVTRNGGPAEILDGGKYGVLVDP 408 (499)
T ss_dssp CBTTEEEEEC-CSHHHHHHHHHHHHHTTCEEEE---CCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHTGGGTSSEEECT
T ss_pred CCceEEECCC-CCHHHHHHHHHhcCcCCCEEEE---CcccCCCCcHHHHHHHcCCCEEEecCCCHHHHhcCCceEEEeCC
Confidence 9 68999998 9999999999999 99999 6888999999999999999999999999999999999999996
Q ss_pred -CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHh
Q 011969 415 -SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLS-ARWATEWEEHAKPLITEVI 469 (474)
Q Consensus 415 -~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~ 469 (474)
|+++++++|..++++ ++.++++++++++.+.+ ++|+...+++ ..+++++.
T Consensus 409 ~d~~~la~~i~~ll~~----~~~~~~~~~~a~~~~~~~fs~~~~~~~~-~~~y~~~~ 460 (499)
T 2r60_A 409 EDPEDIARGLLKAFES----EETWSAYQEKGKQRVEERYTWQETARGY-LEVIQEIA 460 (499)
T ss_dssp TCHHHHHHHHHHHHSC----HHHHHHHHHHHHHHHHHHSBHHHHHHHH-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHH
Confidence 799999999999984 88999999999987755 9998766553 34444443
No 5
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=1.7e-35 Score=302.88 Aligned_cols=360 Identities=14% Similarity=0.182 Sum_probs=259.1
Q ss_pred EEEEEeCCCCCCchHH-HHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHH
Q 011969 7 ACVVVLGDLGRSPRMQ-YQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPL 85 (474)
Q Consensus 7 ~~i~~~~~~g~~~r~~-~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (474)
+........||..+.. ..+..|+++ ||+|+|++....... ....+++.++.++.... .........+...
T Consensus 18 ~~~~~~p~~GG~~~~~~~la~~L~~~-G~~V~v~~~~~~~~~--~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~---- 88 (394)
T 2jjm_A 18 IGITCYPSVGGSGVVGTELGKQLAER-GHEIHFITSGLPFRL--NKVYPNIYFHEVTVNQY--SVFQYPPYDLALA---- 88 (394)
T ss_dssp EEEECCC--CHHHHHHHHHHHHHHHT-TCEEEEECSSCC------CCCTTEEEECCCCC------CCSCCHHHHHH----
T ss_pred eehhcCCCCCCHHHHHHHHHHHHHhC-CCEEEEEeCCCCCcc--cccCCceEEEecccccc--cccccccccHHHH----
Confidence 3444445566665544 556788886 999999997643211 12346888877762111 1111111111111
Q ss_pred HHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhC--CCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHH
Q 011969 86 IQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLR--RSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYY 163 (474)
Q Consensus 86 ~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 163 (474)
.. +...+. ..+||+||++.+. +....+.+++++. ++|+|+++|+...... +... .++.+++.+
T Consensus 89 ~~----l~~~l~-~~~~Dvv~~~~~~--~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~----~~~~----~~~~~~~~~ 153 (394)
T 2jjm_A 89 SK----MAEVAQ-RENLDILHVHYAI--PHAICAYLAKQMIGERIKIVTTLHGTDITVL----GSDP----SLNNLIRFG 153 (394)
T ss_dssp HH----HHHHHH-HHTCSEEEECSST--THHHHHHHHHHHTTTCSEEEEECCHHHHHTT----TTCT----TTHHHHHHH
T ss_pred HH----HHHHHH-HcCCCEEEEcchh--HHHHHHHHHHHhhcCCCCEEEEEecCccccc----CCCH----HHHHHHHHH
Confidence 11 111122 2689999999753 3333344555544 5899999999643111 1111 123566777
Q ss_pred hhhcCEEEEeCHHHHHHHHHHhCC--ceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcc
Q 011969 164 GKMANGCLCVTQAMQHELAQNWGI--KATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKAD 240 (474)
Q Consensus 164 ~~~ad~vi~vS~~~~~~l~~~~~~--~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (474)
.+.||.++++|+.+++.+.+.++. ++.+++|+.+ +.|.+.. ...++++++
T Consensus 154 ~~~ad~ii~~s~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~---~~~~~~~~~------------------------ 206 (394)
T 2jjm_A 154 IEQSDVVTAVSHSLINETHELVKPNKDIQTVYNFIDERVYFKRD---MTQLKKEYG------------------------ 206 (394)
T ss_dssp HHHSSEEEESCHHHHHHHHHHTCCSSCEEECCCCCCTTTCCCCC---CHHHHHHTT------------------------
T ss_pred HhhCCEEEECCHHHHHHHHHhhCCcccEEEecCCccHHhcCCcc---hHHHHHHcC------------------------
Confidence 889999999999999999887764 5899999954 5565542 233444444
Q ss_pred hhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEE
Q 011969 241 ETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF 320 (474)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 320 (474)
++++. ..++|+|++.+.||++.+++|+..+.+ .++++|
T Consensus 207 -------------~~~~~-~~i~~~G~~~~~Kg~~~li~a~~~l~~----------------------------~~~~~l 244 (394)
T 2jjm_A 207 -------------ISESE-KILIHISNFRKVKRVQDVVQAFAKIVT----------------------------EVDAKL 244 (394)
T ss_dssp -------------CC----CEEEEECCCCGGGTHHHHHHHHHHHHH----------------------------SSCCEE
T ss_pred -------------CCCCC-eEEEEeeccccccCHHHHHHHHHHHHh----------------------------hCCCEE
Confidence 21223 389999999999999999999999877 256899
Q ss_pred EEEeCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccc
Q 011969 321 IITGKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC 399 (474)
Q Consensus 321 ~ivG~g~~~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~ 399 (474)
+|+|+|++.+++++.++++++ ++|.|.|. .+++..+|+.||++|+ ||..|++|++++|||+||+|||+++.++
T Consensus 245 ~i~G~g~~~~~l~~~~~~~~l~~~v~~~g~---~~~~~~~~~~adv~v~---ps~~e~~~~~~~EAma~G~PvI~~~~~~ 318 (394)
T 2jjm_A 245 LLVGDGPEFCTILQLVKNLHIEDRVLFLGK---QDNVAELLAMSDLMLL---LSEKESFGLVLLEAMACGVPCIGTRVGG 318 (394)
T ss_dssp EEECCCTTHHHHHHHHHTTTCGGGBCCCBS---CSCTHHHHHTCSEEEE---CCSCCSCCHHHHHHHHTTCCEEEECCTT
T ss_pred EEECCchHHHHHHHHHHHcCCCCeEEEeCc---hhhHHHHHHhCCEEEe---ccccCCCchHHHHHHhcCCCEEEecCCC
Confidence 999999999999999999998 79999996 7999999999999999 6778999999999999999999999999
Q ss_pred cccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHhh
Q 011969 400 IEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEHAKPLITEVIS 470 (474)
Q Consensus 400 ~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~ 470 (474)
..|++.++.+|++++ |+++++++|..++++ ++.++++++++++.. +.++|+...++ ...+++++..
T Consensus 319 ~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~----~~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~~ 387 (394)
T 2jjm_A 319 IPEVIQHGDTGYLCEVGDTTGVADQAIQLLKD----EELHRNMGERARESVYEQFRSEKIVSQ-YETIYYDVLR 387 (394)
T ss_dssp STTTCCBTTTEEEECTTCHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHTC-
T ss_pred hHHHhhcCCceEEeCCCCHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHh
Confidence 999999999999997 799999999999994 889999999999877 78999876655 4455555544
No 6
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=1e-35 Score=300.30 Aligned_cols=335 Identities=13% Similarity=0.086 Sum_probs=239.4
Q ss_pred CCCCCch-HHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 011969 14 DLGRSPR-MQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLL 92 (474)
Q Consensus 14 ~~g~~~r-~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (474)
..||..+ +...+..|+++ ||+|+|++...... ...+++++.++. . ........ ...... +
T Consensus 12 ~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~-----~~~~~~v~~~~~--~---~~~~~~~~----~~~~~~----l 72 (374)
T 2iw1_A 12 PFGGLQRDFMRIASTVAAR-GHHVRVYTQSWEGD-----CPKAFELIQVPV--K---SHTNHGRN----AEYYAW----V 72 (374)
T ss_dssp TTCHHHHHHHHHHHHHHHT-TCCEEEEESEECSC-----CCTTCEEEECCC--C---CSSHHHHH----HHHHHH----H
T ss_pred CCcchhhHHHHHHHHHHhC-CCeEEEEecCCCCC-----CCCCcEEEEEcc--C---cccchhhH----HHHHHH----H
Confidence 3566555 45567788886 99999999763221 124888888872 1 11111111 111111 1
Q ss_pred HHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhh--hcCEE
Q 011969 93 WFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGK--MANGC 170 (474)
Q Consensus 93 ~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~ad~v 170 (474)
...+ +..+||+||++++..... +.++.+..+.+.+.+.|+... ........+.++++..++ .+|.+
T Consensus 73 ~~~i-~~~~~Dvv~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~d~i 140 (374)
T 2iw1_A 73 QNHL-KEHPADRVVGFNKMPGLD---VYFAADVCYAEKVAQEKGFLY--------RLTSRYRHYAAFERATFEQGKSTKL 140 (374)
T ss_dssp HHHH-HHSCCSEEEESSCCTTCS---EEECCSCCHHHHHHHHCCHHH--------HTSHHHHHHHHHHHHHHSTTCCCEE
T ss_pred HHHH-hccCCCEEEEecCCCCce---eeeccccccceeeeecccchh--------hhcHHHHHHHHHHHHHhhccCCcEE
Confidence 1222 227899999987422111 001111122233333444311 111222445567777665 69999
Q ss_pred EEeCHHHHHHHHHHhCC---ceEEEeCCCC-CCCCCCC-hHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhh
Q 011969 171 LCVTQAMQHELAQNWGI---KATVLYDQPP-EFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFT 245 (474)
Q Consensus 171 i~vS~~~~~~l~~~~~~---~~~vi~n~~~-~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (474)
+++|+.+++.+.+.++. ++.+++|+.+ +.|.+.. ...+..++++++
T Consensus 141 i~~s~~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~----------------------------- 191 (374)
T 2iw1_A 141 MMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNG----------------------------- 191 (374)
T ss_dssp EESCHHHHHHHHHHHCCCGGGEEECCCCCCGGGSGGGSCTTHHHHHHHHTT-----------------------------
T ss_pred EEcCHHHHHHHHHHhCCChhheEEecCCcCHHhcCcccchhHHHHHHHHhC-----------------------------
Confidence 99999999999887775 3899999854 5555543 224455666666
Q ss_pred cccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeC
Q 011969 246 SLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK 325 (474)
Q Consensus 246 ~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~ 325 (474)
++. ...+++|+|++.+.||++.+++|+..+.++ ..++++|+|+|+
T Consensus 192 --------~~~-~~~~i~~~G~~~~~K~~~~li~a~~~l~~~--------------------------~~~~~~l~i~G~ 236 (374)
T 2iw1_A 192 --------IKE-QQNLLLQVGSDFGRKGVDRSIEALASLPES--------------------------LRHNTLLFVVGQ 236 (374)
T ss_dssp --------CCT-TCEEEEEECSCTTTTTHHHHHHHHHTSCHH--------------------------HHHTEEEEEESS
T ss_pred --------CCC-CCeEEEEeccchhhcCHHHHHHHHHHhHhc--------------------------cCCceEEEEEcC
Confidence 222 334899999999999999999999988652 136899999999
Q ss_pred CCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccccccccc
Q 011969 326 GPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELV 404 (474)
Q Consensus 326 g~~~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v 404 (474)
|+. +++++.++++++ ++|.|+|. .+++..+|+.||++|+ ||..|++|++++|||+||+|||+++.++..|++
T Consensus 237 g~~-~~~~~~~~~~~~~~~v~~~g~---~~~~~~~~~~ad~~v~---ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i 309 (374)
T 2iw1_A 237 DKP-RKFEALAEKLGVRSNVHFFSG---RNDVSELMAAADLLLH---PAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYI 309 (374)
T ss_dssp SCC-HHHHHHHHHHTCGGGEEEESC---CSCHHHHHHHCSEEEE---CCSCCSSCHHHHHHHHHTCCEEEETTSTTTHHH
T ss_pred CCH-HHHHHHHHHcCCCCcEEECCC---cccHHHHHHhcCEEEe---ccccCCcccHHHHHHHCCCCEEEecCCCchhhh
Confidence 874 678999999998 79999997 7899999999999999 677899999999999999999999999999999
Q ss_pred ccCCcEEEeC---CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchH
Q 011969 405 KVDKNGLLFS---SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWA 454 (474)
Q Consensus 405 ~~~~~G~l~~---~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 454 (474)
.++.+|++++ |+++++++|..++++ ++.++++++++++.+.+++|.
T Consensus 310 ~~~~~g~~~~~~~~~~~l~~~i~~l~~~----~~~~~~~~~~~~~~~~~~~~~ 358 (374)
T 2iw1_A 310 ADANCGTVIAEPFSQEQLNEVLRKALTQ----SPLRMAWAENARHYADTQDLY 358 (374)
T ss_dssp HHHTCEEEECSSCCHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHSCCS
T ss_pred ccCCceEEeCCCCCHHHHHHHHHHHHcC----hHHHHHHHHHHHHHHHHhhHH
Confidence 9999999986 799999999999994 889999999999877665554
No 7
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=3e-34 Score=292.75 Aligned_cols=355 Identities=14% Similarity=0.125 Sum_probs=247.3
Q ss_pred CCceEEEEEeCC---CCCCc-hHHHHHHHHHhhCCCeEEEEecCCCCC-CcceeccCCeEEEEeecCCCCCCCCCchhHH
Q 011969 3 RRGRACVVVLGD---LGRSP-RMQYQALSLARQMSLEVDVVAYGGSKP-HAAILEHPSIHIHTMTQWPTIPRGLPKVLKP 77 (474)
Q Consensus 3 ~~~~~~i~~~~~---~g~~~-r~~~~a~~l~~~~g~eV~Vv~~~~~~~-~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~ 77 (474)
++++++++.... .||.. ++...+..|.++ ||+|++++...... ........+ +++.++.... ..........
T Consensus 19 ~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~-G~~V~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~ 95 (406)
T 2gek_A 19 SHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDA-GHEVSVLAPASPHVKLPDYVVSGG-KAVPIPYNGS-VARLRFGPAT 95 (406)
T ss_dssp --CEEEEECSSCTTSCCHHHHHHHHHHHHHHHT-TCEEEEEESCCTTSCCCTTEEECC-CCC-------------CCHHH
T ss_pred CcceEEEEeccCCCCCCcHHHHHHHHHHHHHHC-CCeEEEEecCCccccCCcccccCC-cEEeccccCC-cccccccHHH
Confidence 344566555321 24433 455667788886 99999999775432 112222222 3444431000 0000000001
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHH
Q 011969 78 VLLLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYR 157 (474)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~ 157 (474)
...+. ..+.+ .+||+||++.+..... +..+++..++|+|+++|+... .......+.+
T Consensus 96 ~~~l~-----------~~l~~-~~~Dii~~~~~~~~~~---~~~~~~~~~~~~i~~~h~~~~--------~~~~~~~~~~ 152 (406)
T 2gek_A 96 HRKVK-----------KWIAE-GDFDVLHIHEPNAPSL---SMLALQAAEGPIVATFHTSTT--------KSLTLSVFQG 152 (406)
T ss_dssp HHHHH-----------HHHHH-HCCSEEEEECCCSSSH---HHHHHHHEESSEEEEECCCCC--------SHHHHHHHHS
T ss_pred HHHHH-----------HHHHh-cCCCEEEECCccchHH---HHHHHHhcCCCEEEEEcCcch--------hhhhHHHHHH
Confidence 11111 11222 6899999998755433 334455568999999999721 1112223333
Q ss_pred HHHHHHhhhcCEEEEeCHHHHHHHHHHhCCc-eEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccC
Q 011969 158 WIEKYYGKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGME 235 (474)
Q Consensus 158 ~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~-~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 235 (474)
+++ .+.+.+|.++++|+.+++.+.+.++.+ + +++|+.+ +.|.+....
T Consensus 153 ~~~-~~~~~~d~ii~~s~~~~~~~~~~~~~~~~-vi~~~v~~~~~~~~~~~----------------------------- 201 (406)
T 2gek_A 153 ILR-PYHEKIIGRIAVSDLARRWQMEALGSDAV-EIPNGVDVASFADAPLL----------------------------- 201 (406)
T ss_dssp TTH-HHHTTCSEEEESSHHHHHHHHHHHSSCEE-ECCCCBCHHHHHTCCCC-----------------------------
T ss_pred HHH-HHHhhCCEEEECCHHHHHHHHHhcCCCcE-EecCCCChhhcCCCchh-----------------------------
Confidence 444 667899999999999999998877765 6 8888744 222222100
Q ss_pred CcCcchhhhhcccccccccCCCCCeEEEEEeec-ccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCcccc
Q 011969 236 GQKADETIFTSLAGIDVFLKPNRPALVVSSTSW-TPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYL 314 (474)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l-~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (474)
...+.+. ..++|+|++ .+.||++.+++|+..+.+ .
T Consensus 202 ----------------~~~~~~~-~~i~~~G~~~~~~Kg~~~li~a~~~l~~---------------------------~ 237 (406)
T 2gek_A 202 ----------------DGYPREG-RTVLFLGRYDEPRKGMAVLLAALPKLVA---------------------------R 237 (406)
T ss_dssp ----------------TTCSCSS-CEEEEESCTTSGGGCHHHHHHHHHHHHT---------------------------T
T ss_pred ----------------hhccCCC-eEEEEEeeeCccccCHHHHHHHHHHHHH---------------------------H
Confidence 0011233 389999999 999999999999999876 3
Q ss_pred CCCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCC-CCCCCchHHHHHHhcCCcEE
Q 011969 315 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVC 393 (474)
Q Consensus 315 ~~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s-~~e~~p~kv~Eama~G~PVi 393 (474)
.|+++|+|+|+|+. +++++.++++ .++|.|.|. ++.+++..+|+.||++|+ +| ..|++|++++|||+||+|||
T Consensus 238 ~~~~~l~i~G~~~~-~~l~~~~~~~-~~~v~~~g~-~~~~~~~~~~~~adv~v~---ps~~~e~~~~~~~Ea~a~G~PvI 311 (406)
T 2gek_A 238 FPDVEILIVGRGDE-DELREQAGDL-AGHLRFLGQ-VDDATKASAMRSADVYCA---PHLGGESFGIVLVEAMAAGTAVV 311 (406)
T ss_dssp STTCEEEEESCSCH-HHHHHHTGGG-GGGEEECCS-CCHHHHHHHHHHSSEEEE---CCCSCCSSCHHHHHHHHHTCEEE
T ss_pred CCCeEEEEEcCCcH-HHHHHHHHhc-cCcEEEEec-CCHHHHHHHHHHCCEEEe---cCCCCCCCchHHHHHHHcCCCEE
Confidence 68999999999988 8888888777 469999998 999999999999999999 56 48999999999999999999
Q ss_pred EecccccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHh
Q 011969 394 AVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEVI 469 (474)
Q Consensus 394 a~~~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 469 (474)
+++.++..|++.++.+|++++ |+++++++|..++++ ++.++++++++++.+..++|+...++ +..+++++.
T Consensus 312 ~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~----~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~~~~~~ 384 (406)
T 2gek_A 312 ASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILED----DQLRAGYVARASERVHRYDWSVVSAQ-IMRVYETVS 384 (406)
T ss_dssp ECCCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHC----HHHHHHHHHHHHHHGGGGBHHHHHHH-HHHHHHHHC
T ss_pred EecCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHH
Confidence 999999999999999999994 799999999999994 88999999999998878888876654 444555544
No 8
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=5.3e-34 Score=299.90 Aligned_cols=292 Identities=14% Similarity=0.126 Sum_probs=217.3
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHH-hhCCCcEEEEecCchhhhh-h---h-ccCCC-chH------HHHHHHHHHHHhhh
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWAS-SLRRSAFIVDWHNFGYTLL-S---L-SLGRR-SHF------VSIYRWIEKYYGKM 166 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~h~~~~~~~-~---~-~~~~~-~~~------~~~~~~~e~~~~~~ 166 (474)
.+||+||+|++.. ..++.+++ +..++|+|+++|+..+... . . ..+.. ..+ .....++++...+.
T Consensus 128 ~~~Divh~~~~~~---~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (485)
T 2qzs_A 128 WRPDVVHAHDWHA---GLAPAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYY 204 (485)
T ss_dssp CCCSEEEEETGGG---TTHHHHHHHTTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETTEEEHHHHHHHH
T ss_pred CCCCEEEeeccch---hHHHHHHhhccCCCCEEEEecCccccCCCCHHHHHhcCCCchhcccccccccccccHHHHHHHh
Confidence 6899999998432 22344444 5678999999999742110 0 0 00000 000 00012456777889
Q ss_pred cCEEEEeCHHHHHHHHHH-hC-------------CceEEEeCCCC-CCCCCCChH----------------HHHHHHHhh
Q 011969 167 ANGCLCVTQAMQHELAQN-WG-------------IKATVLYDQPP-EFFHPTSLE----------------EKHELFCRL 215 (474)
Q Consensus 167 ad~vi~vS~~~~~~l~~~-~~-------------~~~~vi~n~~~-~~f~~~~~~----------------~~~~~~~~l 215 (474)
||.++++|+.+++.+.+. +| .++.+++|+.+ +.|.+.... .+..+++++
T Consensus 205 ad~vi~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 284 (485)
T 2qzs_A 205 ADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAENKRQLQIAM 284 (485)
T ss_dssp CSEEEESSHHHHHHTTSHHHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGGHHHHHHHHHHH
T ss_pred cCeEEecCHHHHHHHhccccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHHHHhHHHHHHHc
Confidence 999999999999988654 34 56899999954 566654321 245566666
Q ss_pred hhccCCCCCccccccccccCCcCcchhhhhcccccccccCC-CCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhcc
Q 011969 216 NKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKP-NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNE 294 (474)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~ 294 (474)
+ +++ ....+++|+|++.+.||++.+++|++.+.+
T Consensus 285 ~-------------------------------------~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~-------- 319 (485)
T 2qzs_A 285 G-------------------------------------LKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLE-------- 319 (485)
T ss_dssp T-------------------------------------CCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHH--------
T ss_pred C-------------------------------------CCCCCCCeEEEEeccCccccCHHHHHHHHHHHhh--------
Confidence 6 222 123389999999999999999999999866
Q ss_pred CCCchhhHhHhhhcCCccccCCCEEEEEEeCCC--ChHHHHHHHHHcCCCcEE-EecCCCCcccHHHHHhcccEEEeecc
Q 011969 295 DDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP--DKESYEEKIRRLRLKRVA-FRTMWLSAEDYPLLLGSADLGVCLHT 371 (474)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~--~~~~~~~~~~~l~l~~V~-f~g~~v~~~~~~~~l~~adv~v~~~~ 371 (474)
++++|+|+|+|+ ..+.+++.+++++ ++|. |.|. +.+++..+|+.||++|+
T Consensus 320 ---------------------~~~~l~ivG~g~~~~~~~l~~~~~~~~-~~v~~~~g~--~~~~~~~~~~~adv~v~--- 372 (485)
T 2qzs_A 320 ---------------------QGGQLALLGAGDPVLQEGFLAAAAEYP-GQVGVQIGY--HEAFSHRIMGGADVILV--- 372 (485)
T ss_dssp ---------------------TTCEEEEEEEECHHHHHHHHHHHHHST-TTEEEEESC--CHHHHHHHHHHCSEEEE---
T ss_pred ---------------------CCcEEEEEeCCchHHHHHHHHHHHhCC-CcEEEeCCC--CHHHHHHHHHhCCEEEE---
Confidence 479999999997 3577888888887 7887 5554 67778999999999999
Q ss_pred CCCCCCCchHHHHHHhcCCcEEEecccccccccccC---------CcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHH
Q 011969 372 SSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVD---------KNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKL 440 (474)
Q Consensus 372 ~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~---------~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~ 440 (474)
||..|+||++++||||||+|||+++.+++.|++.++ .+|++++ |+++|+++|..+++.+ .|++.+++|
T Consensus 373 pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~-~~~~~~~~~ 451 (485)
T 2qzs_A 373 PSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLW-SRPSLWRFV 451 (485)
T ss_dssp CCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHHHH-TSHHHHHHH
T ss_pred CCccCCCcHHHHHHHHCCCCEEECCCCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 688899999999999999999999999999999988 8999996 7999999999999300 058889999
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHhh
Q 011969 441 RNGTLEMGLSARWATEWEEHAKPLITEVIS 470 (474)
Q Consensus 441 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 470 (474)
++++++ +.++|+...+++ ..++++++.
T Consensus 452 ~~~~~~--~~fs~~~~~~~~-~~ly~~~~~ 478 (485)
T 2qzs_A 452 QRQAMA--MDFSWQVAAKSY-RELYYRLKL 478 (485)
T ss_dssp HHHHHH--CCCCHHHHHHHH-HHHHHHHC-
T ss_pred HHHHHh--hcCCHHHHHHHH-HHHHHHhhh
Confidence 999975 589998876654 445555543
No 9
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=4.3e-34 Score=300.57 Aligned_cols=292 Identities=13% Similarity=0.114 Sum_probs=218.2
Q ss_pred cCCCCEEEEeCCCChhHHHHHHHHHhh--CCCcEEEEecCchhhhh-h---h-ccCCC-chH----HHH--HHHHHHHHh
Q 011969 99 IASPDVFLVQNPPSVPTLVAVKWASSL--RRSAFIVDWHNFGYTLL-S---L-SLGRR-SHF----VSI--YRWIEKYYG 164 (474)
Q Consensus 99 ~~~~Dvi~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~h~~~~~~~-~---~-~~~~~-~~~----~~~--~~~~e~~~~ 164 (474)
..+||+||+|++ .+..++.++++. .++|+|+++|+..+... . . ..+.. ..+ ... ...+++...
T Consensus 128 ~~~~DiIh~~~~---~~~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (485)
T 1rzu_A 128 GWRPDMVHAHDW---QAAMTPVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGL 204 (485)
T ss_dssp SCCCSEEEEEHH---HHTTHHHHHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHH
T ss_pred CCCCCEEEeccc---chhHHHHHHhhcccCCCCEEEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHH
Confidence 378999999983 222234455554 78999999999742110 0 0 00000 000 000 014567788
Q ss_pred hhcCEEEEeCHHHHHHHHHH-hC-----------CceEEEeCCCC-CCCCCCChH----------------HHHHHHHhh
Q 011969 165 KMANGCLCVTQAMQHELAQN-WG-----------IKATVLYDQPP-EFFHPTSLE----------------EKHELFCRL 215 (474)
Q Consensus 165 ~~ad~vi~vS~~~~~~l~~~-~~-----------~~~~vi~n~~~-~~f~~~~~~----------------~~~~~~~~l 215 (474)
+.||.++++|+.+++.+.+. +| .++.+++|+.+ +.|.|.... .+..+++++
T Consensus 205 ~~ad~vi~~S~~~~~~~~~~~~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 284 (485)
T 1rzu_A 205 QTATALSTVSPSYAEEILTAEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHF 284 (485)
T ss_dssp HHCSEEEESCHHHHHHTTSHHHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHH
T ss_pred hhcCEEEecCHhHHHHHhccccCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhc
Confidence 89999999999999988764 33 35899999944 566654321 245566666
Q ss_pred hhccCCCCCccccccccccCCcCcchhhhhcccccccccCCC-CCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhcc
Q 011969 216 NKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPN-RPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNE 294 (474)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~ 294 (474)
| ++.+ .+ +++|+|++.+.||++.|++|+..+.+
T Consensus 285 ~-------------------------------------~~~~~~~-~i~~vGrl~~~Kg~~~li~a~~~l~~-------- 318 (485)
T 1rzu_A 285 R-------------------------------------IDDDGSP-LFCVISRLTWQKGIDLMAEAVDEIVS-------- 318 (485)
T ss_dssp T-------------------------------------CCCSSSC-EEEEESCBSTTTTHHHHHTTHHHHHH--------
T ss_pred C-------------------------------------CCCCCCe-EEEEEccCccccCHHHHHHHHHHHHh--------
Confidence 6 2333 34 89999999999999999999999866
Q ss_pred CCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHHHHHHHcCCCcEE-EecCCCCcccHHHHHhcccEEEeecc
Q 011969 295 DDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEKIRRLRLKRVA-FRTMWLSAEDYPLLLGSADLGVCLHT 371 (474)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~~~~~~l~l~~V~-f~g~~v~~~~~~~~l~~adv~v~~~~ 371 (474)
++++|+|+|+|+. .+.+++.+++++ ++|. |.|. +.+++..+|+.||++|+
T Consensus 319 ---------------------~~~~l~ivG~g~~~~~~~l~~~~~~~~-~~v~~~~g~--~~~~~~~~~~~adv~v~--- 371 (485)
T 1rzu_A 319 ---------------------LGGRLVVLGAGDVALEGALLAAASRHH-GRVGVAIGY--NEPLSHLMQAGCDAIII--- 371 (485)
T ss_dssp ---------------------TTCEEEEEECBCHHHHHHHHHHHHHTT-TTEEEEESC--CHHHHHHHHHHCSEEEE---
T ss_pred ---------------------cCceEEEEeCCchHHHHHHHHHHHhCC-CcEEEecCC--CHHHHHHHHhcCCEEEE---
Confidence 4799999999973 577888888886 6898 5554 67777999999999999
Q ss_pred CCCCCCCchHHHHHHhcCCcEEEecccccccccccC---------CcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHH
Q 011969 372 SSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVD---------KNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKL 440 (474)
Q Consensus 372 ~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~---------~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~ 440 (474)
||..|+||++++||||||+|||+++.+++.|++.++ .+|++++ |+++|+++|..+++.+ .|++.+++|
T Consensus 372 pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~-~~~~~~~~~ 450 (485)
T 1rzu_A 372 PSRFEPCGLTQLYALRYGCIPVVARTGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYY-HDPKLWTQM 450 (485)
T ss_dssp CCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHH-TCHHHHHHH
T ss_pred CcccCCCCHHHHHHHHCCCCEEEeCCCChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHHHh-CCHHHHHHH
Confidence 687899999999999999999999999999999988 8999996 7999999999999300 058899999
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHHHHhh
Q 011969 441 RNGTLEMGLSARWATEWEEHAKPLITEVIS 470 (474)
Q Consensus 441 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 470 (474)
++++++ +.++|+...+++ ..+++++.+
T Consensus 451 ~~~~~~--~~fs~~~~~~~~-~~~y~~~~~ 477 (485)
T 1rzu_A 451 QKLGMK--SDVSWEKSAGLY-AALYSQLIS 477 (485)
T ss_dssp HHHHHT--CCCBHHHHHHHH-HHHHHHHTC
T ss_pred HHHHHH--HhCChHHHHHHH-HHHHHHhhC
Confidence 999975 589998876654 445555543
No 10
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=5.3e-35 Score=301.26 Aligned_cols=356 Identities=15% Similarity=0.147 Sum_probs=239.8
Q ss_pred CCCCceEEEEEeCCCCCCchHHH-HHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHH
Q 011969 1 MGRRGRACVVVLGDLGRSPRMQY-QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVL 79 (474)
Q Consensus 1 m~~~~~~~i~~~~~~g~~~r~~~-~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~ 79 (474)
|+++|++++......||..+... .+..|.++ ||+|+|++............ ++.. .+. ......... ....
T Consensus 38 ~~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~-G~~v~v~~~~~~~~~~~~~~--~~~~-~~~--~~~~~~~~~--~~~~ 109 (416)
T 2x6q_A 38 LKGRSFVHVNSTSFGGGVAEILHSLVPLLRSI-GIEARWFVIEGPTEFFNVTK--TFHN-ALQ--GNESLKLTE--EMKE 109 (416)
T ss_dssp TTTCEEEEEESCSSSSTHHHHHHHHHHHHHHT-TCEEEEEECCCCHHHHHHHH--HHHH-HHT--TCCSCCCCH--HHHH
T ss_pred hhccEEEEEeCCCCCCCHHHHHHHHHHHHHhC-CCeEEEEEccCCcchhhhhc--ccce-eec--ccccccccH--HHHH
Confidence 55555555544444567666554 56777776 99999999764321100000 0000 000 000000110 1111
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHH
Q 011969 80 LLLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWI 159 (474)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 159 (474)
.+..... .+...+ +..+||+||+|++...... .+++ .+.|+|++.|+... ... ....+.+
T Consensus 110 ~~~~~~~----~~~~~l-~~~~~Dvv~~~~~~~~~~~---~~~~--~~~p~v~~~h~~~~-------~~~---~~~~~~~ 169 (416)
T 2x6q_A 110 LYLNVNR----ENSKFI-DLSSFDYVLVHDPQPAALI---EFYE--KKSPWLWRCHIDLS-------SPN---REFWEFL 169 (416)
T ss_dssp HHHHHHH----HHHHSS-CGGGSSEEEEESSTTGGGG---GGSC--CCSCEEEECCSCCS-------SCC---HHHHHHH
T ss_pred HHHHHHH----HHHHHH-hhcCCCEEEEeccchhhHH---HHHH--hcCCEEEEEccccC-------Ccc---HHHHHHH
Confidence 1111111 111222 3358999999986543221 1222 23899999998721 111 1223344
Q ss_pred HHHHhhhcCEEE-EeCHHHHHHHHHHhCCceEEEeCCCC-CCCCC--CChHHHHHHHHhhhhccCCCCCccccccccccC
Q 011969 160 EKYYGKMANGCL-CVTQAMQHELAQNWGIKATVLYDQPP-EFFHP--TSLEEKHELFCRLNKILHQPLGVQDCVSNAGME 235 (474)
Q Consensus 160 e~~~~~~ad~vi-~vS~~~~~~l~~~~~~~~~vi~n~~~-~~f~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 235 (474)
++.+ +.+|.++ ++|+..++.+. ..++.+++|+.+ ..|.+ .+...+..++++++
T Consensus 170 ~~~~-~~~~~~i~~~s~~~~~~~~---~~~~~vi~ngvd~~~~~~~~~~~~~~~~~r~~~~------------------- 226 (416)
T 2x6q_A 170 RRFV-EKYDRYIFHLPEYVQPELD---RNKAVIMPPSIDPLSEKNVELKQTEILRILERFD------------------- 226 (416)
T ss_dssp HHHH-TTSSEEEESSGGGSCTTSC---TTTEEECCCCBCTTSTTTSCCCHHHHHHHHHHTT-------------------
T ss_pred HHHH-HhCCEEEEechHHHHhhCC---ccceEEeCCCCChhhhcccccChhhHHHHHHHhC-------------------
Confidence 4444 5566655 66665543221 145889999944 44433 23334556666666
Q ss_pred CcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccC
Q 011969 236 GQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLY 315 (474)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (474)
++++.+ +++|+|++.+.||++.+++|+..+.++ .
T Consensus 227 ------------------~~~~~~-~i~~vGrl~~~Kg~~~li~a~~~l~~~---------------------------~ 260 (416)
T 2x6q_A 227 ------------------VDPEKP-IITQVSRFDPWKGIFDVIEIYRKVKEK---------------------------I 260 (416)
T ss_dssp ------------------CCTTSC-EEEEECCCCTTSCHHHHHHHHHHHHHH---------------------------C
T ss_pred ------------------CCCCCc-EEEEEeccccccCHHHHHHHHHHHHHh---------------------------C
Confidence 223344 899999999999999999999998874 6
Q ss_pred CCEEEEEEeCCCC-----hHHHHHHHHHcCC-CcEEEecC--CCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHh
Q 011969 316 PRLLFIITGKGPD-----KESYEEKIRRLRL-KRVAFRTM--WLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFG 387 (474)
Q Consensus 316 ~~~~l~ivG~g~~-----~~~~~~~~~~l~l-~~V~f~g~--~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama 387 (474)
|+++|+|+|+|+. .+.+++.++++++ ++|.|+|. .++.+++..+|+.||++|+ ||..|++|++++||||
T Consensus 261 ~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~---ps~~E~~~~~~lEAma 337 (416)
T 2x6q_A 261 PGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQ---MSIREGFGLTVTEAMW 337 (416)
T ss_dssp TTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEE---CCSSCSSCHHHHHHHH
T ss_pred CCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEE---CCCcCCCccHHHHHHH
Confidence 8999999999975 4567888999998 79999995 1346799999999999999 6878999999999999
Q ss_pred cCCcEEEecccccccccccCCcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHHHHHHH
Q 011969 388 CGLPVCAVSYSCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWATEWEEH 460 (474)
Q Consensus 388 ~G~PVia~~~~~~~e~v~~~~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~ 460 (474)
||+|||+++.++..|++.++.+|++++|+++++++|..++++ ++.++++++++++.+ +.++|+...+++
T Consensus 338 ~G~PvI~~~~~g~~e~i~~~~~g~l~~d~~~la~~i~~ll~~----~~~~~~~~~~a~~~~~~~fs~~~~~~~~ 407 (416)
T 2x6q_A 338 KGKPVIGRAVGGIKFQIVDGETGFLVRDANEAVEVVLYLLKH----PEVSKEMGAKAKERVRKNFIITKHMERY 407 (416)
T ss_dssp TTCCEEEESCHHHHHHCCBTTTEEEESSHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHTBHHHHHHHH
T ss_pred cCCCEEEccCCCChhheecCCCeEEECCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 999999999999999999999999999999999999999994 889999999998876 368887765553
No 11
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=2e-33 Score=314.57 Aligned_cols=297 Identities=12% Similarity=0.114 Sum_probs=219.9
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHH-----HHHHHHHHhhhcCEEEEeC
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSI-----YRWIEKYYGKMANGCLCVT 174 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~-----~~~~e~~~~~~ad~vi~vS 174 (474)
.+||+||+|. ..+..++.++++..++|+|++.|+.+.............+... ....|+..++.||.|||+|
T Consensus 406 ~~PDVIHsH~---~~sglva~llar~~gvP~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S 482 (816)
T 3s28_A 406 GKPDLIIGNY---SDGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITST 482 (816)
T ss_dssp SCCSEEEEEH---HHHHHHHHHHHHHHTCCEEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESC
T ss_pred CCCeEEEeCC---chHHHHHHHHHHHcCCCEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEECC
Confidence 5799999997 4555567788888899999999998643221110001111111 1234777899999999999
Q ss_pred HHHHHHHHH---HhC---------------------CceEEEeCCCC-CCCCCCChHHH-----HHHHHhhhhccCCCCC
Q 011969 175 QAMQHELAQ---NWG---------------------IKATVLYDQPP-EFFHPTSLEEK-----HELFCRLNKILHQPLG 224 (474)
Q Consensus 175 ~~~~~~l~~---~~~---------------------~~~~vi~n~~~-~~f~~~~~~~~-----~~~~~~l~~~~~~~~~ 224 (474)
+..++.+.+ .++ .++.+|+||.+ +.|.|...... .......-
T Consensus 483 ~~~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l-------- 554 (816)
T 3s28_A 483 FQEIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELL-------- 554 (816)
T ss_dssp HHHHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccc--------
Confidence 998874221 111 17899999954 67766542111 00000000
Q ss_pred ccccccccccCCcCcchhhhhcc-ccccccc--CCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhh
Q 011969 225 VQDCVSNAGMEGQKADETIFTSL-AGIDVFL--KPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEE 301 (474)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~ 301 (474)
|... ......+ .++.+ +++|+|++.+.||++.+++|+..+.++
T Consensus 555 -------------------~~p~~~r~~lg~l~~~~~~-vIl~vGRl~~~KGid~LIeA~~~L~~~-------------- 600 (816)
T 3s28_A 555 -------------------YSDVENKEHLCVLKDKKKP-ILFTMARLDRVKNLSGLVEWYGKNTRL-------------- 600 (816)
T ss_dssp -------------------HCSCCBTTEESCBSCTTSC-EEEEECCCCTTTTHHHHHHHHHHCHHH--------------
T ss_pred -------------------cchhhHHHHhcccCCCCCe-EEEEEccCcccCCHHHHHHHHHHHHhh--------------
Confidence 0000 0000001 23344 899999999999999999999999773
Q ss_pred HhHhhhcCCccccCCCEEEEEEeCCC-----------ChHHHHHHHHHcCC-CcEEEecC---CCCcccHHHHHh-cccE
Q 011969 302 VFLKEISDGKQYLYPRLLFIITGKGP-----------DKESYEEKIRRLRL-KRVAFRTM---WLSAEDYPLLLG-SADL 365 (474)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~l~ivG~g~-----------~~~~~~~~~~~l~l-~~V~f~g~---~v~~~~~~~~l~-~adv 365 (474)
.++++|+|+|+|+ ..+++++.++++++ ++|.|+|. +++.+++..+|. .||+
T Consensus 601 -------------~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~aaDv 667 (816)
T 3s28_A 601 -------------RELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTKGA 667 (816)
T ss_dssp -------------HHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHTTCE
T ss_pred -------------CCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhcCeE
Confidence 5789999999998 45778899999999 79999994 145588999998 6899
Q ss_pred EEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEeC--CHHHHHHHHHHHH----hCCCCCHHHHHH
Q 011969 366 GVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLF----KGFPDDSDVLKK 439 (474)
Q Consensus 366 ~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~----~~~~~~~~~~~~ 439 (474)
+|+ ||..|+||++++||||||+|||+++.+++.|++.++.+|++++ |+++++++|..++ . |++.+++
T Consensus 668 fV~---PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL~~Ll~----d~~~~~~ 740 (816)
T 3s28_A 668 FVQ---PALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKE----DPSHWDE 740 (816)
T ss_dssp EEE---CCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHCCBTTTBEEECTTSHHHHHHHHHHHHHHHHH----CTHHHHH
T ss_pred EEE---CCCccCccHHHHHHHHcCCCEEEeCCCChHHHHccCCcEEEeCCCCHHHHHHHHHHHHHHhcc----CHHHHHH
Confidence 999 6888999999999999999999999999999999999999997 7999999998776 5 5889999
Q ss_pred HHHHHHHhc-cccchHHHHHHHH
Q 011969 440 LRNGTLEMG-LSARWATEWEEHA 461 (474)
Q Consensus 440 ~~~~~~~~~-~~~~w~~~~~~~~ 461 (474)
|++++++.+ +.++|+...+++.
T Consensus 741 m~~~ar~~a~~~fSwe~~a~~ll 763 (816)
T 3s28_A 741 ISKGGLQRIEEKYTWQIYSQRLL 763 (816)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999977 7899987665543
No 12
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=3.2e-32 Score=273.31 Aligned_cols=293 Identities=17% Similarity=0.099 Sum_probs=217.9
Q ss_pred CCCCchHH-HHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 011969 15 LGRSPRMQ-YQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKPLIQFFMLLW 93 (474)
Q Consensus 15 ~g~~~r~~-~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (474)
.||..+.. ..+..|.++ ||+|++++....... .+++++++.+ . ...+.+.+.
T Consensus 29 ~gG~~~~~~~l~~~L~~~-G~~v~v~~~~~~~~~-----~~~~~~~~~~----------~----~~~l~~~l~------- 81 (342)
T 2iuy_A 29 YGGIQWVVANLMDGLLEL-GHEVFLLGAPGSPAG-----RPGLTVVPAG----------E----PEEIERWLR------- 81 (342)
T ss_dssp SCHHHHHHHHHHHHHHHT-TCEEEEESCTTSCCC-----STTEEECSCC----------S----HHHHHHHHH-------
T ss_pred CChHHHHHHHHHHHHHHc-CCeEEEEecCCCCCC-----CCcceeccCC----------c----HHHHHHHHH-------
Confidence 46555544 456777776 999999997754322 2355543221 1 011222221
Q ss_pred HHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEe
Q 011969 94 FLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCV 173 (474)
Q Consensus 94 ~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~v 173 (474)
+ .+||+||++++..... +++..+.| |+++|+... ... .+|.++++
T Consensus 82 ----~-~~~Dvi~~~~~~~~~~------~~~~~~~p-v~~~h~~~~-------~~~----------------~~d~ii~~ 126 (342)
T 2iuy_A 82 ----T-ADVDVVHDHSGGVIGP------AGLPPGTA-FISSHHFTT-------RPV----------------NPVGCTYS 126 (342)
T ss_dssp ----H-CCCSEEEECSSSSSCS------TTCCTTCE-EEEEECSSS-------BCS----------------CCTTEEES
T ss_pred ----h-cCCCEEEECCchhhHH------HHhhcCCC-EEEecCCCC-------Ccc----------------cceEEEEc
Confidence 2 7999999998653221 14567899 999999842 111 19999999
Q ss_pred CHHHHHHHHHHhCCceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccccccc
Q 011969 174 TQAMQHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDV 252 (474)
Q Consensus 174 S~~~~~~l~~~~~~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (474)
|+.+++.+.+ ..++.+++|+.+ +.|.+...
T Consensus 127 S~~~~~~~~~--~~~~~vi~ngvd~~~~~~~~~----------------------------------------------- 157 (342)
T 2iuy_A 127 SRAQRAHCGG--GDDAPVIPIPVDPARYRSAAD----------------------------------------------- 157 (342)
T ss_dssp CHHHHHHTTC--CTTSCBCCCCBCGGGSCCSTT-----------------------------------------------
T ss_pred CHHHHHHHhc--CCceEEEcCCCChhhcCcccc-----------------------------------------------
Confidence 9999988876 566889999854 44443310
Q ss_pred ccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHH
Q 011969 253 FLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 332 (474)
Q Consensus 253 ~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~ 332 (474)
..++.+ .++|+|++.+.||++.+++|++.+ +++|+|+|+|+..+++
T Consensus 158 -~~~~~~-~i~~vG~~~~~Kg~~~li~a~~~~--------------------------------~~~l~i~G~g~~~~~l 203 (342)
T 2iuy_A 158 -QVAKED-FLLFMGRVSPHKGALEAAAFAHAC--------------------------------GRRLVLAGPAWEPEYF 203 (342)
T ss_dssp -CCCCCS-CEEEESCCCGGGTHHHHHHHHHHH--------------------------------TCCEEEESCCCCHHHH
T ss_pred -cCCCCC-EEEEEeccccccCHHHHHHHHHhc--------------------------------CcEEEEEeCcccHHHH
Confidence 012233 789999999999999999999874 4789999999999999
Q ss_pred HHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCC----------CCCCchHHHHHHhcCCcEEEeccccccc
Q 011969 333 EEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS----------GLDLPMKVVDMFGCGLPVCAVSYSCIEE 402 (474)
Q Consensus 333 ~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~----------~e~~p~kv~Eama~G~PVia~~~~~~~e 402 (474)
++.+++++ ++|.|+|. ++.+++..+|+.||++|+ ||. .|++|++++|||+||+|||+++.++..|
T Consensus 204 ~~~~~~~~-~~v~~~g~-~~~~~l~~~~~~adv~v~---ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~~e 278 (342)
T 2iuy_A 204 DEITRRYG-STVEPIGE-VGGERRLDLLASAHAVLA---MSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCLAE 278 (342)
T ss_dssp HHHHHHHT-TTEEECCC-CCHHHHHHHHHHCSEEEE---CCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTHHH
T ss_pred HHHHHHhC-CCEEEecc-CCHHHHHHHHHhCCEEEE---CCcccccccccccccCccHHHHHHHhcCCCEEEcCCCChHH
Confidence 99999988 89999998 999999999999999999 565 7999999999999999999999999999
Q ss_pred cccc--CCcEEEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHh
Q 011969 403 LVKV--DKNGLLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEVI 469 (474)
Q Consensus 403 ~v~~--~~~G~l~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 469 (474)
++.+ +.+|++++ |+++++++|..+++ .++.++.+. +.++|+...++ ...+++++.
T Consensus 279 ~~~~~~~~~g~~~~~d~~~l~~~i~~l~~--------~~~~~~~~~---~~~s~~~~~~~-~~~~~~~~~ 336 (342)
T 2iuy_A 279 IVPSVGEVVGYGTDFAPDEARRTLAGLPA--------SDEVRRAAV---RLWGHVTIAER-YVEQYRRLL 336 (342)
T ss_dssp HGGGGEEECCSSSCCCHHHHHHHHHTSCC--------HHHHHHHHH---HHHBHHHHHHH-HHHHHHHHH
T ss_pred HhcccCCCceEEcCCCHHHHHHHHHHHHH--------HHHHHHHHH---HhcCHHHHHHH-HHHHHHHHH
Confidence 9999 89999998 89999999998865 233333333 36788776655 344445444
No 13
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=1.3e-31 Score=275.45 Aligned_cols=269 Identities=13% Similarity=0.193 Sum_probs=208.9
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCC----CcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcC--EEEEe
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRR----SAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMAN--GCLCV 173 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad--~vi~v 173 (474)
.+||+||++++ ... .+.++..+.+ .+++..+|... ...... .+.+.+.+| .++++
T Consensus 80 ~~~Div~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--------~~~~~~~~~~~~ii~~ 140 (413)
T 3oy2_A 80 HKPDIVMIYND---PIV-IGNYLLAMGKCSHRTKIVLYVDLVS-------KNIREN--------LWWIFSHPKVVGVMAM 140 (413)
T ss_dssp HCCSEEEEEEC---HHH-HHHHHHHGGGCCSCCEEEEEECCCS-------BSCCGG--------GGGGGGCTTEEEEEES
T ss_pred cCCCEEEEcch---HHH-HHHHHHHhccCCCCCceeeeccccc-------hhhHHH--------HHHHHhccCCceEEEc
Confidence 68999999963 222 2334444443 45566777652 111111 245667888 99999
Q ss_pred CHHHHHHHHHHhC--CceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccccc
Q 011969 174 TQAMQHELAQNWG--IKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGI 250 (474)
Q Consensus 174 S~~~~~~l~~~~~--~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (474)
|+.+++.+.+ ++ .++.+++|+.+ +.| . ..+++++
T Consensus 141 S~~~~~~~~~-~~~~~~~~vi~ngvd~~~~--~------~~~~~~~---------------------------------- 177 (413)
T 3oy2_A 141 SKCWISDICN-YGCKVPINIVSHFVDTKTI--Y------DARKLVG---------------------------------- 177 (413)
T ss_dssp STHHHHHHHH-TTCCSCEEECCCCCCCCCC--T------THHHHTT----------------------------------
T ss_pred CHHHHHHHHH-cCCCCceEEeCCCCCHHHH--H------HHHHhcC----------------------------------
Confidence 9999999988 55 35999999954 444 1 1223333
Q ss_pred ccccCC-CCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh
Q 011969 251 DVFLKP-NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK 329 (474)
Q Consensus 251 ~~~~~~-~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~ 329 (474)
+++ ....+++|+|++.+.||++.+++|+..+.++ .|+++|+|+|+|+..
T Consensus 178 ---~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~~---------------------------~~~~~l~ivG~g~~~ 227 (413)
T 3oy2_A 178 ---LSEYNDDVLFLNMNRNTARKRLDIYVLAAARFISK---------------------------YPDAKVRFLCNSHHE 227 (413)
T ss_dssp ---CGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHHH---------------------------CTTCCEEEEEECCTT
T ss_pred ---CCcccCceEEEEcCCCchhcCcHHHHHHHHHHHHh---------------------------CCCcEEEEEeCCccc
Confidence 111 1334899999999999999999999998774 789999999999865
Q ss_pred ------HHHHHHHHHcCCC-c-------EEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEe
Q 011969 330 ------ESYEEKIRRLRLK-R-------VAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV 395 (474)
Q Consensus 330 ------~~~~~~~~~l~l~-~-------V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~ 395 (474)
+.+++.+++++++ + |.|.|. ++.+++..+|+.||++|+ ||..|+||++++||||||+|||++
T Consensus 228 ~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~-~~~~~~~~~~~~adv~v~---pS~~E~~~~~~lEAma~G~PvI~s 303 (413)
T 3oy2_A 228 SKFDLHSIALRELVASGVDNVFTHLNKIMINRTV-LTDERVDMMYNACDVIVN---CSSGEGFGLCSAEGAVLGKPLIIS 303 (413)
T ss_dssp CSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSC-CCHHHHHHHHHHCSEEEE---CCSCCSSCHHHHHHHTTTCCEEEE
T ss_pred chhhHHHHHHHHHHHcCcccccccccceeeccCc-CCHHHHHHHHHhCCEEEe---CCCcCCCCcHHHHHHHcCCCEEEc
Confidence 8889999999994 4 777776 999999999999999999 688999999999999999999999
Q ss_pred cccccccccccCCc---------------EE--EeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc-cccchHH
Q 011969 396 SYSCIEELVKVDKN---------------GL--LFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG-LSARWAT 455 (474)
Q Consensus 396 ~~~~~~e~v~~~~~---------------G~--l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~w~~ 455 (474)
+.++..|++.++.+ |+ +++ |+++++++| .++++ ++.++++++++++.+ +.++|+.
T Consensus 304 ~~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~~----~~~~~~~~~~a~~~~~~~fs~~~ 378 (413)
T 3oy2_A 304 AVGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKD----EKNRKEYGKRVQDFVKTKPTWDD 378 (413)
T ss_dssp CCHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTTS----HHHHHHHHHHHHHHHTTSCCHHH
T ss_pred CCCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhcC----HHHHHHHHHHHHHHHHHhCCHHH
Confidence 99999999988877 88 875 899999999 99984 899999999999976 5789987
Q ss_pred HHHHHHHHHHHHHhh
Q 011969 456 EWEEHAKPLITEVIS 470 (474)
Q Consensus 456 ~~~~~~~~~~~~~~~ 470 (474)
..++ ...+++++..
T Consensus 379 ~~~~-~~~~~~~~~~ 392 (413)
T 3oy2_A 379 ISSD-IIDFFNSLLR 392 (413)
T ss_dssp HHHH-HHHHHHHHTC
T ss_pred HHHH-HHHHHHHHHh
Confidence 6655 4455555543
No 14
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=99.97 E-value=1.5e-29 Score=272.42 Aligned_cols=291 Identities=14% Similarity=0.085 Sum_probs=206.3
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHh-------hCCCcEEEEecCchhhh------hhhccCCCchHHHH-----------
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASS-------LRRSAFIVDWHNFGYTL------LSLSLGRRSHFVSI----------- 155 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~h~~~~~~------~~~~~~~~~~~~~~----------- 155 (474)
..+||+|+|.. .+.++..+++. +.++|+|+|+|+..+.- ..............
T Consensus 152 ~~ddIiH~hDW---~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (536)
T 3vue_A 152 GEDVVFVCNDW---HTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVE 228 (536)
T ss_dssp CSCEEEEEESG---GGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTC
T ss_pred CCCEEEEECcc---hHHHHHHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhccccccc
Confidence 45788889984 33333333332 24789999999874211 00000000100000
Q ss_pred --HHHHHHHHhhhcCEEEEeCHHHHHHHHHHhC-----------CceEEEeCCC-CCCCCCCCh----------------
Q 011969 156 --YRWIEKYYGKMANGCLCVTQAMQHELAQNWG-----------IKATVLYDQP-PEFFHPTSL---------------- 205 (474)
Q Consensus 156 --~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~-----------~~~~vi~n~~-~~~f~~~~~---------------- 205 (474)
.-.+++.....||.|++||+..++++.+.++ .++.+|+||. .+.|.|...
T Consensus 229 ~~~~n~~k~~i~~ad~v~tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K 308 (536)
T 3vue_A 229 GRKINWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAK 308 (536)
T ss_dssp EEEEEHHHHHHHHCSEEEESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHH
T ss_pred ccchhHHHHHHHhccEEEEcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhh
Confidence 0024566778999999999999999877543 2489999994 467766421
Q ss_pred -HHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHh
Q 011969 206 -EEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMY 284 (474)
Q Consensus 206 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l 284 (474)
..+..+.+++|+ ...++.| +|+|+||+.++||++.|++|+..+
T Consensus 309 ~~~k~~l~~~~gl-----------------------------------~~d~~~p-~i~~vgRl~~~Kg~~~li~a~~~l 352 (536)
T 3vue_A 309 ALNKEALQAEAGL-----------------------------------PVDRKIP-LIAFIGRLEEQKGPDVMAAAIPEL 352 (536)
T ss_dssp HHHHHHHHHHTTS-----------------------------------CCCTTSC-EEEEECCBSGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-----------------------------------CCCCCCc-EEEEEeeccccCChHHHHHHHHHh
Confidence 123334445552 1234566 899999999999999999999988
Q ss_pred HHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh--HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc
Q 011969 285 DRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK--ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS 362 (474)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~--~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~ 362 (474)
.+ ++.+|+|+|.|+.. ..++..+..++ .+|.+.+. .+.+++..+|+.
T Consensus 353 ~~-----------------------------~~~~l~l~G~G~~~~~~~~~~~~~~~~-~~v~~~~~-~~~~~~~~~~~~ 401 (536)
T 3vue_A 353 MQ-----------------------------EDVQIVLLGTGKKKFEKLLKSMEEKYP-GKVRAVVK-FNAPLAHLIMAG 401 (536)
T ss_dssp TT-----------------------------SSCEEEEECCBCHHHHHHHHHHHHHST-TTEEEECS-CCHHHHHHHHHH
T ss_pred Hh-----------------------------hCCeEEEEeccCchHHHHHHHHHhhcC-CceEEEEe-ccHHHHHHHHHh
Confidence 55 45778888887654 33444444443 58999988 899999999999
Q ss_pred ccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEE----------eC--CHHHHHHHHHHHHhCC
Q 011969 363 ADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLL----------FS--SSSELADQLLMLFKGF 430 (474)
Q Consensus 363 adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l----------~~--~~~~la~~i~~l~~~~ 430 (474)
||++|+ ||..|+||++++|||+||+|||+++.||+.|+|.++.+|+. ++ |+++|+++|.++++.+
T Consensus 402 aD~~v~---PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~V~dg~~G~~~~~~~~~g~l~~~~d~~~la~ai~ral~~~ 478 (536)
T 3vue_A 402 ADVLAV---PSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVKKVAATLKRAIKVV 478 (536)
T ss_dssp CSEEEE---CCSCCSSCSHHHHHHHTTCCEEECSCTHHHHHCCBTTTEEECCCCCSCTTCCCHHHHHHHHHHHHHHHHHT
T ss_pred hheeec---ccccCCCCHHHHHHHHcCCCEEEcCCCCchheeeCCCCccccccCCCceeEECCCCHHHHHHHHHHHHHhc
Confidence 999999 78899999999999999999999999999999999999994 43 5889999999988743
Q ss_pred CCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Q 011969 431 PDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEV 468 (474)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 468 (474)
. .+.++++++++.+ +.++|+...++. ..+++++
T Consensus 479 ~--~~~~~~~~~~am~--~~fSW~~~A~~y-~~ly~~L 511 (536)
T 3vue_A 479 G--TPAYEEMVRNCMN--QDLSWKGPAKNW-ENVLLGL 511 (536)
T ss_dssp T--SHHHHHHHHHHHH--SCCSSHHHHHHH-HHHHHTT
T ss_pred C--cHHHHHHHHHHHH--hcCCHHHHHHHH-HHHHHHh
Confidence 2 3457778888755 479998877664 4455544
No 15
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.96 E-value=2.3e-28 Score=246.63 Aligned_cols=328 Identities=16% Similarity=0.121 Sum_probs=220.3
Q ss_pred ceEEEEEeCCCCCCc-hHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHH
Q 011969 5 GRACVVVLGDLGRSP-RMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLK 83 (474)
Q Consensus 5 ~~~~i~~~~~~g~~~-r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (474)
++++++..+ .||.. +....+..|.++ ||+|++++..... ........|++++.++.... ... .....+.....
T Consensus 7 mkIl~~~~~-~gG~~~~~~~la~~L~~~-G~~V~v~~~~~~~-~~~~~~~~g~~~~~~~~~~~--~~~-~~~~~~~~~~~ 80 (364)
T 1f0k_A 7 KRLMVMAGG-TGGHVFPGLAVAHHLMAQ-GWQVRWLGTADRM-EADLVPKHGIEIDFIRISGL--RGK-GIKALIAAPLR 80 (364)
T ss_dssp CEEEEECCS-SHHHHHHHHHHHHHHHTT-TCEEEEEECTTST-HHHHGGGGTCEEEECCCCCC--TTC-CHHHHHTCHHH
T ss_pred cEEEEEeCC-CccchhHHHHHHHHHHHc-CCEEEEEecCCcc-hhhhccccCCceEEecCCcc--CcC-ccHHHHHHHHH
Confidence 466666533 44332 234567778886 9999999976532 11233445888888872211 111 10111111111
Q ss_pred HHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHH
Q 011969 84 PLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYY 163 (474)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 163 (474)
.+.... -+...+. ..+||+||++.+.. .. .+.++++..++|+|++.|+... + ..++.+
T Consensus 81 ~~~~~~-~l~~~l~-~~~pDvv~~~~~~~--~~-~~~~~~~~~~~p~v~~~~~~~~-------~----------~~~~~~ 138 (364)
T 1f0k_A 81 IFNAWR-QARAIMK-AYKPDVVLGMGGYV--SG-PGGLAAWSLGIPVVLHEQNGIA-------G----------LTNKWL 138 (364)
T ss_dssp HHHHHH-HHHHHHH-HHCCSEEEECSSTT--HH-HHHHHHHHTTCCEEEEECSSSC-------C----------HHHHHH
T ss_pred HHHHHH-HHHHHHH-hcCCCEEEEeCCcC--ch-HHHHHHHHcCCCEEEEecCCCC-------c----------HHHHHH
Confidence 111111 1112222 26899999997532 22 2445666788999999998621 1 234566
Q ss_pred hhhcCEEEEeCHHHHHHHHHHhCCceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchh
Q 011969 164 GKMANGCLCVTQAMQHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADET 242 (474)
Q Consensus 164 ~~~ad~vi~vS~~~~~~l~~~~~~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (474)
.+.+|.+++.++.. ++ ++.+++|+.. +.|.+.. . +.+++
T Consensus 139 ~~~~d~v~~~~~~~-------~~-~~~~i~n~v~~~~~~~~~--~----~~~~~-------------------------- 178 (364)
T 1f0k_A 139 AKIATKVMQAFPGA-------FP-NAEVVGNPVRTDVLALPL--P----QQRLA-------------------------- 178 (364)
T ss_dssp TTTCSEEEESSTTS-------SS-SCEECCCCCCHHHHTSCC--H----HHHHT--------------------------
T ss_pred HHhCCEEEecChhh-------cC-CceEeCCccchhhcccch--h----hhhcc--------------------------
Confidence 78899999988754 23 5678888744 3333321 1 12222
Q ss_pred hhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEE-EE
Q 011969 243 IFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLL-FI 321 (474)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ 321 (474)
+.++.+.+++++|++.+.|+.+.+++|+..+.+ +++ ++
T Consensus 179 -----------~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~------------------------------~~~~l~ 217 (364)
T 1f0k_A 179 -----------GREGPVRVLVVGGSQGARILNQTMPQVAAKLGD------------------------------SVTIWH 217 (364)
T ss_dssp -----------TCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGG------------------------------GEEEEE
T ss_pred -----------cCCCCcEEEEEcCchHhHHHHHHHHHHHHHhcC------------------------------CcEEEE
Confidence 234455567777899999999999999988621 577 57
Q ss_pred EEeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccc
Q 011969 322 ITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIE 401 (474)
Q Consensus 322 ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~ 401 (474)
++|+|+ .+++++.++++++++|.|.|. + +++..+|+.||++|+| | + |++++|||+||+|||+++.++..
T Consensus 218 i~G~~~-~~~l~~~~~~~~~~~v~~~g~-~--~~~~~~~~~ad~~v~~---s-g---~~~~~EAma~G~Pvi~~~~~g~~ 286 (364)
T 1f0k_A 218 QSGKGS-QQSVEQAYAEAGQPQHKVTEF-I--DDMAAAYAWADVVVCR---S-G---ALTVSEIAAAGLPALFVPFQHKD 286 (364)
T ss_dssp ECCTTC-HHHHHHHHHHTTCTTSEEESC-C--SCHHHHHHHCSEEEEC---C-C---HHHHHHHHHHTCCEEECCCCCTT
T ss_pred EcCCch-HHHHHHHHhhcCCCceEEecc-h--hhHHHHHHhCCEEEEC---C-c---hHHHHHHHHhCCCEEEeeCCCCc
Confidence 789887 577888899998888999998 4 8999999999999994 4 2 89999999999999999988764
Q ss_pred --------cccccCCcEEEeC--C--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHH
Q 011969 402 --------ELVKVDKNGLLFS--S--SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEE 459 (474)
Q Consensus 402 --------e~v~~~~~G~l~~--~--~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 459 (474)
+++ +++.|++++ | +++++++|..+ + ++.+++|++++++....++|+...+.
T Consensus 287 ~~q~~~~~~~~-~~g~g~~~~~~d~~~~~la~~i~~l--~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (364)
T 1f0k_A 287 RQQYWNALPLE-KAGAAKIIEQPQLSVDAVANTLAGW--S----RETLLTMAERARAASIPDATERVANE 349 (364)
T ss_dssp CHHHHHHHHHH-HTTSEEECCGGGCCHHHHHHHHHTC--C----HHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred hhHHHHHHHHH-hCCcEEEeccccCCHHHHHHHHHhc--C----HHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 455 445699996 4 89999999988 3 88999999999998777777665544
No 16
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.96 E-value=1.6e-29 Score=263.64 Aligned_cols=263 Identities=14% Similarity=0.135 Sum_probs=183.2
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHH----h---hCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcC--EE
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWAS----S---LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMAN--GC 170 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~----~---~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad--~v 170 (474)
.++|+||++. ..+...+..+. . ..+.++++.+|+++.. +..... .+.+.+..++.++ .+
T Consensus 131 ~~~Dvv~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~----~~~~~~~~~~~~~~~~v 198 (413)
T 2x0d_A 131 AKHDIFIATA---WWTAYAAQRIVSWQSDTYGIPPNKILYIIQDFEPG-----FYQWSS----QYVLAESTYKYRGPQIA 198 (413)
T ss_dssp CTTEEEEECS---HHHHHHHHHHHHHHHHHHTCCCCCEEEEECSCGGG-----GSCSSH----HHHHHHHTTSCCSCEEE
T ss_pred CCCCEEEEeh---HHHHHHHHHhhhhhhhhcccccCcEEEEEeechhh-----cCccCh----HHHHHHHHhccCCceEE
Confidence 5799999987 44443333221 1 2356788888887421 111111 1234555566655 58
Q ss_pred EEeCHHHHHHHHHH-hC-CceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcc
Q 011969 171 LCVTQAMQHELAQN-WG-IKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSL 247 (474)
Q Consensus 171 i~vS~~~~~~l~~~-~~-~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (474)
+++|+.+++.+.+. ++ .++.+++++.+ +.|.+..
T Consensus 199 i~~S~~~~~~l~~~g~~~~~~~~i~~g~d~~~~~~~~------------------------------------------- 235 (413)
T 2x0d_A 199 VFNSELLKQYFNNKGYNFTDEYFFQPKINTTLKNYIN------------------------------------------- 235 (413)
T ss_dssp EEESHHHHHHHHHHTCCCSEEEEECCCCCHHHHTTTT-------------------------------------------
T ss_pred EEcCHHHHHHHHHcCCCCCceEEeCCCcCchhhcccc-------------------------------------------
Confidence 99999999999875 22 23677777643 2221110
Q ss_pred cccccccCCCCCeEEEEEeec-ccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCC---EEEEEE
Q 011969 248 AGIDVFLKPNRPALVVSSTSW-TPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPR---LLFIIT 323 (474)
Q Consensus 248 ~~~~~~~~~~~~~~i~~~G~l-~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~iv 323 (474)
...++.+ .++++|++ .+.||++.|++|+..+.++ .|+ ++|+|+
T Consensus 236 -----~~~~~~~-~il~~gr~~~~~Kg~~~li~A~~~l~~~---------------------------~~~~~~~~l~iv 282 (413)
T 2x0d_A 236 -----DKRQKEK-IILVYGRPSVKRNAFTLIVEALKIFVQK---------------------------YDRSNEWKIISV 282 (413)
T ss_dssp -----SCCCCCS-EEEEEECTTCGGGCHHHHHHHHHHHHHH---------------------------CTTGGGCEEEEE
T ss_pred -----cccCCCC-EEEEEecCchhccCHHHHHHHHHHHHHh---------------------------CCCCCceEEEEE
Confidence 0112223 67888996 6889999999999998763 454 899999
Q ss_pred eCCCChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccccccc
Q 011969 324 GKGPDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEE 402 (474)
Q Consensus 324 G~g~~~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e 402 (474)
|+|+.. .++++ ++|.|+|. ++.+++..+|+.||++|+ +|..|+||++++||||||+|||+++ ++..|
T Consensus 283 G~~~~~-------~~l~~~~~v~f~G~-~~~~~l~~~~~~adv~v~---pS~~E~~g~~~lEAmA~G~PVV~~~-~g~~e 350 (413)
T 2x0d_A 283 GEKHKD-------IALGKGIHLNSLGK-LTLEDYADLLKRSSIGIS---LMISPHPSYPPLEMAHFGLRVITNK-YENKD 350 (413)
T ss_dssp ESCCCC-------EEEETTEEEEEEES-CCHHHHHHHHHHCCEEEC---CCSSSSCCSHHHHHHHTTCEEEEEC-BTTBC
T ss_pred cCCchh-------hhcCCcCcEEEcCC-CCHHHHHHHHHhCCEEEE---ecCCCCCCcHHHHHHhCCCcEEEeC-CCcch
Confidence 998764 24566 68999998 999999999999999999 6878999999999999999999954 56789
Q ss_pred ccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhhc
Q 011969 403 LVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLITEVISQ 471 (474)
Q Consensus 403 ~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 471 (474)
++.++.+|++++ |+++|+++|..++++ ++.+++ ++++.+..++|+...++ ..+++++.++
T Consensus 351 ~v~~~~~G~lv~~~d~~~la~ai~~ll~~----~~~~~~---~~~~~~~~~~W~~~~~~--~~~~~~l~~~ 412 (413)
T 2x0d_A 351 LSNWHSNIVSLEQLNPENIAETLVELCMS----FNNRDV---DKKESSNMMFYINEFNE--FSFIKEIEEK 412 (413)
T ss_dssp GGGTBTTEEEESSCSHHHHHHHHHHHHHH----TC----------CCBSCGGGCCCC-----TTHHHHHTT
T ss_pred hhhcCCCEEEeCCCCHHHHHHHHHHHHcC----HHHHHH---hHHHHHHhCCHHHHHHH--HHHHHHHHhh
Confidence 999999999986 799999999999985 445554 56666667889877655 4555555544
No 17
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.95 E-value=1.9e-27 Score=240.49 Aligned_cols=262 Identities=12% Similarity=0.043 Sum_probs=183.7
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (474)
.+||+||+|++. . ..+++.++++..++|++++.|+.. ......++.. ...++.+.+.+|.++++|+..++
T Consensus 94 ~~pDvv~~~~~~-~-~~~~~~~~~~~~~ip~v~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~d~ii~~s~~~~~ 163 (375)
T 3beo_A 94 AKPDIVLVHGDT-T-TTFIASLAAFYNQIPVGHVEAGLR------TWDKYSPYPE--EMNRQLTGVMADLHFSPTAKSAT 163 (375)
T ss_dssp HCCSEEEEETTS-H-HHHHHHHHHHHTTCCEEEESCCCC------CSCTTSSTTH--HHHHHHHHHHCSEEEESSHHHHH
T ss_pred hCCCEEEEeCCc-h-HHHHHHHHHHHHCCCEEEEecccc------cccccCCChh--HhhhhHHhhhhheeeCCCHHHHH
Confidence 689999998742 2 223345566778899998777651 1111111111 12333455679999999999999
Q ss_pred HHHHHhCCc---eEEEeCC-CC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccccccccc
Q 011969 180 ELAQNWGIK---ATVLYDQ-PP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFL 254 (474)
Q Consensus 180 ~l~~~~~~~---~~vi~n~-~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (474)
.+.+ .|.+ +.+++|+ .+ ..+.+... .+.+++.+ +
T Consensus 164 ~~~~-~g~~~~~i~vi~n~~~d~~~~~~~~~-~~~~~~~~---------------------------------------~ 202 (375)
T 3beo_A 164 NLQK-ENKDESRIFITGNTAIDALKTTVKET-YSHPVLEK---------------------------------------L 202 (375)
T ss_dssp HHHH-TTCCGGGEEECCCHHHHHHHHHCCSS-CCCHHHHT---------------------------------------T
T ss_pred HHHH-cCCCcccEEEECChhHhhhhhhhhhh-hhHHHHHh---------------------------------------c
Confidence 8876 4653 7888886 22 11111100 00011111 1
Q ss_pred CCCCCeEEEEEeecccC-CCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHH
Q 011969 255 KPNRPALVVSSTSWTPD-EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 333 (474)
Q Consensus 255 ~~~~~~~i~~~G~l~~~-k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~ 333 (474)
++++++++++|++.+. ||++.+++|+..+.++ .|++++++ |.|++. +++
T Consensus 203 -~~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~---------------------------~~~~~~i~-~~g~~~-~~~ 252 (375)
T 3beo_A 203 -GNNRLVLMTAHRRENLGEPMRNMFRAIKRLVDK---------------------------HEDVQVVY-PVHMNP-VVR 252 (375)
T ss_dssp -TTSEEEEEECCCGGGTTHHHHHHHHHHHHHHHH---------------------------CTTEEEEE-ECCSCH-HHH
T ss_pred -cCCCeEEEEecccccchhHHHHHHHHHHHHHhh---------------------------CCCeEEEE-eCCCCH-HHH
Confidence 2344577899999875 9999999999998763 67888654 667653 455
Q ss_pred HHHHHc-CC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec-ccccccccccCCcE
Q 011969 334 EKIRRL-RL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCIEELVKVDKNG 410 (474)
Q Consensus 334 ~~~~~l-~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~-~~~~~e~v~~~~~G 410 (474)
+.++++ +. ++|.|.|. ++..++..+|+.||++|+ +| |..++|||+||+|||+++ .++..|++.++ +|
T Consensus 253 ~~~~~~~~~~~~v~~~g~-~~~~~~~~~~~~ad~~v~---~s-----g~~~lEA~a~G~Pvi~~~~~~~~~e~v~~g-~g 322 (375)
T 3beo_A 253 ETANDILGDYGRIHLIEP-LDVIDFHNVAARSYLMLT---DS-----GGVQEEAPSLGVPVLVLRDTTERPEGIEAG-TL 322 (375)
T ss_dssp HHHHHHHTTCTTEEEECC-CCHHHHHHHHHTCSEEEE---CC-----HHHHHHHHHHTCCEEECSSCCSCHHHHHTT-SE
T ss_pred HHHHHHhhccCCEEEeCC-CCHHHHHHHHHhCcEEEE---CC-----CChHHHHHhcCCCEEEecCCCCCceeecCC-ce
Confidence 555554 43 69999987 888899999999999999 45 567999999999999996 48899998777 99
Q ss_pred EEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHH
Q 011969 411 LLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATE 456 (474)
Q Consensus 411 ~l~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 456 (474)
++++ |+++++++|..++++ ++.+++|+++++++...++|+..
T Consensus 323 ~~v~~d~~~la~~i~~ll~~----~~~~~~~~~~~~~~~~~~~~~~i 365 (375)
T 3beo_A 323 KLAGTDEETIFSLADELLSD----KEAHDKMSKASNPYGDGRASERI 365 (375)
T ss_dssp EECCSCHHHHHHHHHHHHHC----HHHHHHHCCCCCTTCCSCHHHHH
T ss_pred EEcCCCHHHHHHHHHHHHhC----hHhHhhhhhcCCCCCCCcHHHHH
Confidence 9994 899999999999994 88899999888766544544443
No 18
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.94 E-value=5.7e-27 Score=243.28 Aligned_cols=236 Identities=12% Similarity=0.106 Sum_probs=173.1
Q ss_pred CCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHHH
Q 011969 101 SPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQHE 180 (474)
Q Consensus 101 ~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~ 180 (474)
++|+||.... .... ++. +++..++|+++++|+...... .. .. ...+.+++..++.||.++++|+.+++.
T Consensus 124 ~~DvIh~~~~--~~~~-~~~-~~~~~~~p~v~~~h~~~~~~~---~~-~~---~~~~~~~~~~~~~ad~vi~~S~~~~~~ 192 (406)
T 2hy7_A 124 ESDVIVFESG--IAVA-FIE-LAKRVNPAAKLVYRASDGLST---IN-VA---SYIEREFDRVAPTLDVIALVSPAMAAE 192 (406)
T ss_dssp HCSEEEEESS--GGGG-GHH-HHHHHCTTSEEEEEESSCHHH---HT-CC---HHHHHHHHHHGGGCSEEEESCGGGGGG
T ss_pred CCCEEEECCc--hHHH-HHH-HHHHhCCCEEEEEeccchhhc---cc-cc---HHHHHHHHHHHHhCCEEEEcCHHHHHH
Confidence 6999995442 2111 112 334557899999997532000 11 11 234567888889999999999999988
Q ss_pred HHHHhCCceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCC
Q 011969 181 LAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRP 259 (474)
Q Consensus 181 l~~~~~~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (474)
+.+. + ++.+++||.+ +.|.+... .+.+..
T Consensus 193 ~~~~-~-~i~vipngvd~~~f~~~~~------------------------------------------------~~~~~~ 222 (406)
T 2hy7_A 193 VVSR-D-NVFHVGHGVDHNLDQLGDP------------------------------------------------SPYAEG 222 (406)
T ss_dssp CSCS-T-TEEECCCCBCTTHHHHHCS------------------------------------------------CSCCSS
T ss_pred HHhc-C-CEEEEcCCcChHhcCcccc------------------------------------------------cccCCC
Confidence 7653 4 8999999854 33321100 012232
Q ss_pred eEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHHHHHc
Q 011969 260 ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRL 339 (474)
Q Consensus 260 ~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~~~l 339 (474)
.+++|+|++.+.||+ ++++ .++ .|+++|+|+|+|+ ++++
T Consensus 223 ~~i~~vGrl~~~Kg~---~~~l---~~~---------------------------~~~~~l~ivG~g~--------~~~~ 261 (406)
T 2hy7_A 223 IHAVAVGSMLFDPEF---FVVA---SKA---------------------------FPQVTFHVIGSGM--------GRHP 261 (406)
T ss_dssp EEEEEECCTTBCHHH---HHHH---HHH---------------------------CTTEEEEEESCSS--------CCCT
T ss_pred cEEEEEeccccccCH---HHHH---HHh---------------------------CCCeEEEEEeCch--------HHhc
Confidence 489999999999998 3333 332 5899999999987 5567
Q ss_pred CC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHH-------hcCCcEEEecccccccccccCCcEE
Q 011969 340 RL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMF-------GCGLPVCAVSYSCIEELVKVDKNGL 411 (474)
Q Consensus 340 ~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eam-------a~G~PVia~~~~~~~e~v~~~~~G~ 411 (474)
++ ++|.|+|. ++.+++..+|+.||++|+ ||..|++|++++||| |||+|||+++. +.++.+|+
T Consensus 262 ~l~~~V~f~G~-~~~~~l~~~~~~adv~v~---ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------v~~~~~G~ 331 (406)
T 2hy7_A 262 GYGDNVIVYGE-MKHAQTIGYIKHARFGIA---PYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA------VVGPYKSR 331 (406)
T ss_dssp TCCTTEEEECC-CCHHHHHHHHHTCSEEEC---CBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------GTCSCSSE
T ss_pred CCCCCEEEcCC-CCHHHHHHHHHhcCEEEE---CCCcccCchHHHHHHHHHHHHhhCCCcEEEehh------cccCcceE
Confidence 77 79999998 999999999999999999 677899999999999 99999999987 66788999
Q ss_pred E-eC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHH
Q 011969 412 L-FS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHA 461 (474)
Q Consensus 412 l-~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 461 (474)
+ ++ |+++|+++|..++++ ++ + +..+.++|+...+++.
T Consensus 332 l~v~~~d~~~la~ai~~ll~~----~~-----~----~~~~~~sw~~~a~~~~ 371 (406)
T 2hy7_A 332 FGYTPGNADSVIAAITQALEA----PR-----V----RYRQCLNWSDTTDRVL 371 (406)
T ss_dssp EEECTTCHHHHHHHHHHHHHC----CC-----C----CCSCCCBHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHhC----cc-----h----hhhhcCCHHHHHHHHH
Confidence 9 75 799999999999996 22 1 3345788887766654
No 19
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.94 E-value=1.7e-26 Score=234.56 Aligned_cols=269 Identities=14% Similarity=0.106 Sum_probs=184.4
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (474)
.+||+||++++. . ....+.++++..++|++++.|+... .....++.. ......+.+.+|.++++|+..++
T Consensus 85 ~~pDvv~~~~~~-~-~~~~~~~~a~~~~ip~v~~~~~~~~------~~~~~~~~~--~~~~~~~~~~~d~ii~~s~~~~~ 154 (384)
T 1vgv_A 85 FKPDVVLVHGDT-T-TTLATSLAAFYQRIPVGHVEAGLRT------GDLYSPWPE--EANRTLTGHLAMYHFSPTETSRQ 154 (384)
T ss_dssp HCCSEEEEETTC-H-HHHHHHHHHHTTTCCEEEESCCCCC------SCTTSSTTH--HHHHHHHHTTCSEEEESSHHHHH
T ss_pred hCCCEEEEeCCc-h-HHHHHHHHHHHHCCCEEEEeccccc------ccccCCCch--HhhHHHHHhhccEEEcCcHHHHH
Confidence 689999999742 2 2223445667789999999898621 111111111 11222335679999999999999
Q ss_pred HHHHHhCCc---eEEEeCCC-CCCCCCCC-----hHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccccc
Q 011969 180 ELAQNWGIK---ATVLYDQP-PEFFHPTS-----LEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGI 250 (474)
Q Consensus 180 ~l~~~~~~~---~~vi~n~~-~~~f~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (474)
.+.+ +|.+ +.+++|+. +..+.+.. ...+.++++++|
T Consensus 155 ~l~~-~g~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 199 (384)
T 1vgv_A 155 NLLR-ENVADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYP---------------------------------- 199 (384)
T ss_dssp HHHH-TTCCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCT----------------------------------
T ss_pred HHHH-cCCChhhEEEeCChHHHHHHhhhhccccchhhhHHHHHhcc----------------------------------
Confidence 8876 4653 77787762 21110000 000012222211
Q ss_pred ccccCCCCCeEEEEEeecccC-CCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEE-eCCC-
Q 011969 251 DVFLKPNRPALVVSSTSWTPD-EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT-GKGP- 327 (474)
Q Consensus 251 ~~~~~~~~~~~i~~~G~l~~~-k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv-G~g~- 327 (474)
.++++++.+++++|++.+. ||++.+++|+..+.++ .|+++|+++ |.++
T Consensus 200 --~~~~~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~---------------------------~~~~~l~i~~g~~~~ 250 (384)
T 1vgv_A 200 --FIDPDKKMILVTGHRRESFGRGFEEICHALADIATT---------------------------HQDIQIVYPVHLNPN 250 (384)
T ss_dssp --TCCTTSEEEEEECCCBSSCCHHHHHHHHHHHHHHHH---------------------------CTTEEEEEECCBCHH
T ss_pred --ccCCCCCEEEEEeCCccccchHHHHHHHHHHHHHhh---------------------------CCCeEEEEEcCCCHH
Confidence 0223455678899999876 9999999999998774 678999885 5443
Q ss_pred ChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc-ccccccccc
Q 011969 328 DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY-SCIEELVKV 406 (474)
Q Consensus 328 ~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~-~~~~e~v~~ 406 (474)
..+.+++.+.. .++|.|.|. ++.+++..+|+.||++|+ +| |..++|||+||+|||+++. ++..|++.+
T Consensus 251 ~~~~l~~~~~~--~~~v~~~g~-~~~~~~~~~~~~ad~~v~---~S-----g~~~lEA~a~G~PvI~~~~~~~~~e~v~~ 319 (384)
T 1vgv_A 251 VREPVNRILGH--VKNVILIDP-QEYLPFVWLMNHAWLILT---DS-----GGIQEEAPSLGKPVLVMRDTTERPEAVTA 319 (384)
T ss_dssp HHHHHHHHHTT--CTTEEEECC-CCHHHHHHHHHHCSEEEE---SS-----STGGGTGGGGTCCEEEESSCCSCHHHHHH
T ss_pred HHHHHHHHhhc--CCCEEEeCC-CCHHHHHHHHHhCcEEEE---CC-----cchHHHHHHcCCCEEEccCCCCcchhhhC
Confidence 22333333221 268999987 888999999999999999 45 2348999999999999986 899999877
Q ss_pred CCcEEEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHH
Q 011969 407 DKNGLLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWE 458 (474)
Q Consensus 407 ~~~G~l~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 458 (474)
+ +|++++ |+++|+++|..++++ ++.+++|+++++++...++|+...+
T Consensus 320 g-~g~lv~~d~~~la~~i~~ll~d----~~~~~~~~~~~~~~~~~~~~~~i~~ 367 (384)
T 1vgv_A 320 G-TVRLVGTDKQRIVEEVTRLLKD----ENEYQAMSRAHNPYGDGQACSRILE 367 (384)
T ss_dssp T-SEEEECSSHHHHHHHHHHHHHC----HHHHHHHHSSCCTTCCSCHHHHHHH
T ss_pred C-ceEEeCCCHHHHHHHHHHHHhC----hHHHhhhhhccCCCcCCCHHHHHHH
Confidence 7 999996 899999999999994 8889999998877655555555443
No 20
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.93 E-value=1.6e-25 Score=240.08 Aligned_cols=260 Identities=13% Similarity=0.093 Sum_probs=190.7
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (474)
.+||+||.++....... +..++ .+..|+++++|+...+ .+ .. ...+..+|.++++|+..++
T Consensus 281 ~~~Div~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~-----~~--~~---------~~~~~~~d~~i~~s~~~~~ 341 (568)
T 2vsy_A 281 HGIDLLFDLRGWGGGGR-PEVFA--LRPAPVQVNWLAYPGT-----SG--AP---------WMDYVLGDAFALPPALEPF 341 (568)
T ss_dssp TTCSEEEECSSCTTCSS-CHHHH--TCCSSEEEEESSSSSC-----CC--CT---------TCCEEEECTTTSCTTTGGG
T ss_pred CCCCEEEECCCCCCcch-HHHHh--cCCCceeEeeecCCcc-----cC--CC---------CceEEEECCCcCCcccccC
Confidence 78999998664332211 12222 2346888888875210 01 00 0112357888899986553
Q ss_pred HHHHHhCCceEEEeCCCCCCCCCCChH---HHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCC
Q 011969 180 ELAQNWGIKATVLYDQPPEFFHPTSLE---EKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKP 256 (474)
Q Consensus 180 ~l~~~~~~~~~vi~n~~~~~f~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (474)
++.++.+++|. |.+.... .....+.++| ++.
T Consensus 342 -----~~~~i~~ipn~----~~~~~~~~~~~~~~~r~~~~-------------------------------------~~~ 375 (568)
T 2vsy_A 342 -----YSEHVLRLQGA----FQPSDTSRVVAEPPSRTQCG-------------------------------------LPE 375 (568)
T ss_dssp -----CSSEEEECSSC----SCCCCTTCCCCCCCCTGGGT-------------------------------------CCT
T ss_pred -----CcceeEcCCCc----CCCCCCCCCCCCCCCccccC-------------------------------------CCC
Confidence 45668889883 3222100 0001122222 222
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEe-CCCChHHHHHH
Q 011969 257 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITG-KGPDKESYEEK 335 (474)
Q Consensus 257 ~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG-~g~~~~~~~~~ 335 (474)
.+ +++++|++.+ ||++.+++++..+.++ .|+++|+|+| +|+..+.+++.
T Consensus 376 -~~-~v~~~g~~~~-K~~~~li~a~~~l~~~---------------------------~~~~~l~i~G~~g~~~~~l~~~ 425 (568)
T 2vsy_A 376 -QG-VVLCCFNNSY-KLNPQSMARMLAVLRE---------------------------VPDSVLWLLSGPGEADARLRAF 425 (568)
T ss_dssp -TS-CEEEECCCGG-GCCHHHHHHHHHHHHH---------------------------CTTCEEEEECCSTTHHHHHHHH
T ss_pred -CC-EEEEeCCccc-cCCHHHHHHHHHHHHh---------------------------CCCcEEEEecCCHHHHHHHHHH
Confidence 23 4669999999 9999999999998774 6899999999 89888999999
Q ss_pred HHHcCC--CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEE-------eccc-------c
Q 011969 336 IRRLRL--KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA-------VSYS-------C 399 (474)
Q Consensus 336 ~~~l~l--~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia-------~~~~-------~ 399 (474)
++++|+ ++|.|+|. ++.+++..+|+.||++|+ ||.. ++|++++|||+||+|||+ ++.+ +
T Consensus 426 ~~~~~l~~~~v~~~g~-~~~~~~~~~~~~adv~v~---ps~~-~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g 500 (568)
T 2vsy_A 426 AHAQGVDAQRLVFMPK-LPHPQYLARYRHADLFLD---THPY-NAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLG 500 (568)
T ss_dssp HHHTTCCGGGEEEECC-CCHHHHHHHGGGCSEEEC---CSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHT
T ss_pred HHHcCCChhHEEeeCC-CCHHHHHHHHhcCCEEee---CCCC-CCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCC
Confidence 999998 58999998 999999999999999999 5766 899999999999999999 9999 8
Q ss_pred cccccccCCcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc---cccchHHHHHHHHHHHHHHHhhcc
Q 011969 400 IEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG---LSARWATEWEEHAKPLITEVISQF 472 (474)
Q Consensus 400 ~~e~v~~~~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~w~~~~~~~~~~~~~~~~~~~ 472 (474)
+.|+|.+ |+++++++|..++++ ++.+++|++++++.. ..++|+...++ ...+++++..++
T Consensus 501 ~~e~v~~--------~~~~la~~i~~l~~~----~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~y~~~~~~~ 563 (568)
T 2vsy_A 501 LDEMNVA--------DDAAFVAKAVALASD----PAALTALHARVDVLRRASGVFHMDGFADD-FGALLQALARRH 563 (568)
T ss_dssp CGGGBCS--------SHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHSSTTCHHHHHHH-HHHHHHHHHHTT
T ss_pred ChhhhcC--------CHHHHHHHHHHHhcC----HHHHHHHHHHHHHhhhcCCCCCHHHHHHH-HHHHHHHHHHHH
Confidence 8888754 899999999999994 889999999998876 67899876654 455566665543
No 21
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.93 E-value=3.8e-25 Score=199.26 Aligned_cols=161 Identities=13% Similarity=0.261 Sum_probs=140.9
Q ss_pred CeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHHHHH
Q 011969 259 PALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRR 338 (474)
Q Consensus 259 ~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~~~ 338 (474)
|++++|+|++.+.||++.+++|+..+.+ .|+++|+|+|+|+..+.+++.+++
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~----------------------------~~~~~l~i~G~g~~~~~~~~~~~~ 53 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKY----------------------------KQDIVLLLKGKGPDEKKIKLLAQK 53 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTT----------------------------GGGEEEEEECCSTTHHHHHHHHHH
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhcc----------------------------CCCeEEEEEeCCccHHHHHHHHHH
Confidence 4589999999999999999999999854 478999999999999999999999
Q ss_pred cCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCC-cEEE-ecccccccccccCCcEEEeCCH
Q 011969 339 LRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGL-PVCA-VSYSCIEELVKVDKNGLLFSSS 416 (474)
Q Consensus 339 l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~-PVia-~~~~~~~e~v~~~~~G~l~~~~ 416 (474)
+++ +|.| |. ++.+++..+|+.||++|+ ||..|++|++++|||+||+ |||+ ++.++..+++.++.+.+...|+
T Consensus 54 ~~~-~v~~-g~-~~~~~~~~~~~~adv~v~---ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~~~~~~~~~~~~~ 127 (166)
T 3qhp_A 54 LGV-KAEF-GF-VNSNELLEILKTCTLYVH---AANVESEAIACLEAISVGIVPVIANSPLSATRQFALDERSLFEPNNA 127 (166)
T ss_dssp HTC-EEEC-CC-CCHHHHHHHHTTCSEEEE---CCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGCSSGGGEECTTCH
T ss_pred cCC-eEEE-ee-cCHHHHHHHHHhCCEEEE---CCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhccCCceEEcCCCH
Confidence 998 8999 77 999999999999999999 6888999999999999998 9999 4688999999887764334589
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHH
Q 011969 417 SELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEW 457 (474)
Q Consensus 417 ~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 457 (474)
++++++|..++++ ++.++++++++++..++++|+...
T Consensus 128 ~~l~~~i~~l~~~----~~~~~~~~~~~~~~~~~~s~~~~~ 164 (166)
T 3qhp_A 128 KDLSAKIDWWLEN----KLERERMQNEYAKSALNYTLENSV 164 (166)
T ss_dssp HHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHCChhhhh
Confidence 9999999999994 899999999999988788887654
No 22
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.92 E-value=7.4e-24 Score=196.24 Aligned_cols=151 Identities=20% Similarity=0.266 Sum_probs=139.1
Q ss_pred EEEEEeecc-cCCCHHHHHHHHHHhH--HHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCC--ChHHHHHH
Q 011969 261 LVVSSTSWT-PDEDFGILLEAALMYD--RRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGP--DKESYEEK 335 (474)
Q Consensus 261 ~i~~~G~l~-~~k~~~~Li~a~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~--~~~~~~~~ 335 (474)
+++|+|++. +.||++.+++++..+. + ..|+++|+|+|.|+ ..+++++.
T Consensus 38 ~i~~~G~~~~~~K~~~~li~a~~~l~~~~---------------------------~~~~~~l~i~G~~~~~~~~~l~~~ 90 (200)
T 2bfw_A 38 TFMFIGRFDRGQKGVDVLLKAIEILSSKK---------------------------EFQEMRFIIIGKGDPELEGWARSL 90 (200)
T ss_dssp EEEEESCBCSSSSCHHHHHHHHHHHTTSG---------------------------GGGGEEEEEECCBCHHHHHHHHHH
T ss_pred EEEEeeccccccCCHHHHHHHHHHHHhhc---------------------------cCCCeEEEEECCCChHHHHHHHHH
Confidence 899999999 9999999999999985 4 25889999999998 77889999
Q ss_pred HHHcCCCcEEE-ecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEeC
Q 011969 336 IRRLRLKRVAF-RTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLFS 414 (474)
Q Consensus 336 ~~~l~l~~V~f-~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~~ 414 (474)
+++++ +|.| .|. ++.+++..+|+.||++|+ ++..|++|++++|||+||+|||+++.++..+++ ++.+|++++
T Consensus 91 ~~~~~--~v~~~~g~-~~~~~~~~~~~~ad~~l~---ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~~-~~~~g~~~~ 163 (200)
T 2bfw_A 91 EEKHG--NVKVITEM-LSREFVRELYGSVDFVII---PSYFEPFGLVALEAMCLGAIPIASAVGGLRDII-TNETGILVK 163 (200)
T ss_dssp HHHCT--TEEEECSC-CCHHHHHHHHTTCSEEEE---CCSCCSSCHHHHHHHHTTCEEEEESCHHHHHHC-CTTTCEEEC
T ss_pred HHhcC--CEEEEecc-CCHHHHHHHHHHCCEEEE---CCCCCCccHHHHHHHHCCCCEEEeCCCChHHHc-CCCceEEec
Confidence 99988 9999 988 999999999999999999 677799999999999999999999999999999 999999997
Q ss_pred --CHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHhcc
Q 011969 415 --SSSELADQLLMLFK-GFPDDSDVLKKLRNGTLEMGL 449 (474)
Q Consensus 415 --~~~~la~~i~~l~~-~~~~~~~~~~~~~~~~~~~~~ 449 (474)
|+++++++|..+++ + ++.+++|++++++...
T Consensus 164 ~~~~~~l~~~i~~l~~~~----~~~~~~~~~~a~~~~~ 197 (200)
T 2bfw_A 164 AGDPGELANAILKALELS----RSDLSKFRENCKKRAM 197 (200)
T ss_dssp TTCHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHH
Confidence 79999999999998 5 8899999999998653
No 23
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.92 E-value=2.1e-23 Score=212.36 Aligned_cols=258 Identities=12% Similarity=0.038 Sum_probs=184.1
Q ss_pred hcCCCCEEEEeCCCChhHHHHHHHHHhh--CCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCH
Q 011969 98 KIASPDVFLVQNPPSVPTLVAVKWASSL--RRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQ 175 (474)
Q Consensus 98 ~~~~~Dvi~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~ 175 (474)
...++|+|+++.|+.........+++++ +++|+|+.+||++.... . ... .....|+.+++.||.|++.|+
T Consensus 71 ~~~~~DvIi~q~P~~~~~~~~~~~~~~lk~~~~k~i~~ihDl~pl~~----~-~~~---~~~~~E~~~y~~aD~Ii~~S~ 142 (339)
T 3rhz_A 71 GLRHGDVVIFQTPTWNTTEFDEKLMNKLKLYDIKIVLFIHDVVPLMF----S-GNF---YLMDRTIAYYNKADVVVAPSQ 142 (339)
T ss_dssp TCCTTCEEEEEECCSSCHHHHHHHHHHHTTSSCEEEEEESCCHHHHC----G-GGG---GGHHHHHHHHTTCSEEEESCH
T ss_pred cCCCCCEEEEeCCCcchhhHHHHHHHHHHhcCCEEEEEecccHHhhC----c-cch---hhHHHHHHHHHHCCEEEECCH
Confidence 4588999999999754333223444443 38999999999953211 1 111 123479999999999999999
Q ss_pred HHHHHHHHHhCCc-eEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhccccccccc
Q 011969 176 AMQHELAQNWGIK-ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFL 254 (474)
Q Consensus 176 ~~~~~l~~~~~~~-~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (474)
.+++.+.+. |.+ ..+++.+.-+...+.+. .
T Consensus 143 ~~~~~l~~~-G~~~~ki~~~~~~~~~~~~~~-----------------------------------------------~- 173 (339)
T 3rhz_A 143 KMIDKLRDF-GMNVSKTVVQGMWDHPTQAPM-----------------------------------------------F- 173 (339)
T ss_dssp HHHHHHHHT-TCCCSEEEECCSCCCCCCCCC-----------------------------------------------C-
T ss_pred HHHHHHHHc-CCCcCceeecCCCCccCcccc-----------------------------------------------c-
Confidence 999999874 665 33333221000000000 0
Q ss_pred CCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHH
Q 011969 255 KPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEE 334 (474)
Q Consensus 255 ~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~ 334 (474)
.+.....++|+|+++.... +..+ .++++|+|+|+|+++
T Consensus 174 ~~~~~~~i~yaG~l~k~~~-------L~~l------------------------------~~~~~f~ivG~G~~~----- 211 (339)
T 3rhz_A 174 PAGLKREIHFPGNPERFSF-------VKEW------------------------------KYDIPLKVYTWQNVE----- 211 (339)
T ss_dssp CCEEEEEEEECSCTTTCGG-------GGGC------------------------------CCSSCEEEEESCCCC-----
T ss_pred ccCCCcEEEEeCCcchhhH-------HHhC------------------------------CCCCeEEEEeCCccc-----
Confidence 0112248999999984211 1111 267999999999875
Q ss_pred HHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCC----CCCCchHHHHHHhcCCcEEEecccccccccccCCcE
Q 011969 335 KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS----GLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNG 410 (474)
Q Consensus 335 ~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~----~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G 410 (474)
.++||.|+|. +|.++++.+++.+|++++...... ...+|+|++||||||+|||+++.++..++++++++|
T Consensus 212 -----~l~nV~f~G~-~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~~~~v~~~~~G 285 (339)
T 3rhz_A 212 -----LPQNVHKINY-RPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIANQELIENNGLG 285 (339)
T ss_dssp -----CCTTEEEEEC-CCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTTTHHHHHHTCE
T ss_pred -----CcCCEEEeCC-CCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhHHHHHHhCCeE
Confidence 2349999998 999999999999999998511111 146799999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Q 011969 411 LLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLIT 466 (474)
Q Consensus 411 ~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 466 (474)
+++++.++++++|..+. ++++++|++++++.+...+|..--++.+.+.+.
T Consensus 286 ~~~~~~~e~~~~i~~l~------~~~~~~m~~na~~~a~~~~~~~f~k~~l~~~~~ 335 (339)
T 3rhz_A 286 WIVKDVEEAIMKVKNVN------EDEYIELVKNVRSFNPILRKGFFTRRLLTESVF 335 (339)
T ss_dssp EEESSHHHHHHHHHHCC------HHHHHHHHHHHHHHTHHHHTTHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHhC------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 99999999999998762 567999999999988777777665555544433
No 24
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.92 E-value=1.2e-22 Score=220.34 Aligned_cols=331 Identities=15% Similarity=0.075 Sum_probs=209.5
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHH-hhCCCcEEEEecCchhhhh--h-h------ccCCCc-h---HH---HHHHHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWAS-SLRRSAFIVDWHNFGYTLL--S-L------SLGRRS-H---FV---SIYRWIEKY 162 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~h~~~~~~~--~-~------~~~~~~-~---~~---~~~~~~e~~ 162 (474)
.+||++|+|. +.+.++..+++ +..++++|+++|+..+.-. . . .+...+ . .. .-...+|+.
T Consensus 180 ~~pdIiH~HD---W~tg~~~~~Lk~~~~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~EKa 256 (725)
T 3nb0_A 180 QHAIVAHFHE---WLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERA 256 (725)
T ss_dssp SEEEEEEEES---GGGCTHHHHHHHTTCSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCcEEEeCc---hhhhHHHHHHHHhCCCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHHHH
Confidence 4599999999 44444445554 3558999999999832111 0 0 000000 0 00 112467888
Q ss_pred HhhhcCEEEEeCHHHHHHHHHHhCCc-eEEEeCC-CCCCCCCCChH--HHHHHHHhhhhccCCCCCccccccccccCCcC
Q 011969 163 YGKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQ-PPEFFHPTSLE--EKHELFCRLNKILHQPLGVQDCVSNAGMEGQK 238 (474)
Q Consensus 163 ~~~~ad~vi~vS~~~~~~l~~~~~~~-~~vi~n~-~~~~f~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 238 (474)
....||.|+|||+.++++++..++.+ -.+|+|| +.+.|.|.... .+...++++...+
T Consensus 257 ga~~AD~ITTVS~~yA~Ei~~Ll~r~~d~iIpNGID~~~f~p~~~~~~~k~~aK~klq~~l------------------- 317 (725)
T 3nb0_A 257 AAHSADVFTTVSQITAFEAEHLLKRKPDGILPNGLNVIKFQAFHEFQNLHALKKEKINDFV------------------- 317 (725)
T ss_dssp HHHHSSEEEESSHHHHHHHHHHTSSCCSEECCCCBCCCCCSSTTHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHhCCEEEECCHHHHHHHHHHhcCCCCEEEcCCccccccCcchhhHHHHHHHHHHHHHHH-------------------
Confidence 88999999999999999999876655 3449999 55788775321 2222222221000
Q ss_pred cchhhhhcccccccccCCCCCeEEEEEeecc-cCCCHHHHHHHHHHhHHHHhhh---------hccCCC-----------
Q 011969 239 ADETIFTSLAGIDVFLKPNRPALVVSSTSWT-PDEDFGILLEAALMYDRRVAAI---------LNEDDS----------- 297 (474)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~-~~k~~~~Li~a~~~l~~~~~~~---------~~~~~~----------- 297 (474)
.....+.+.+.++..+++..+||++ .+||++.+++|+..+..++..- +---..
T Consensus 318 ------~~~~~~~l~l~~dk~liifivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~ 391 (725)
T 3nb0_A 318 ------RGHFHGCFDFDLDNTLYFFIAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKG 391 (725)
T ss_dssp ------HHHTTTCCCSCGGGEEEEEEESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHH
T ss_pred ------HhhcccCCCCCCCceeEEEEEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcc
Confidence 0000011123333444667789999 6899999999999998753210 000000
Q ss_pred ---------------------------------------chhhHhHhh-h-----------cCCccccCCCEEEEEEeCC
Q 011969 298 ---------------------------------------TNEEVFLKE-I-----------SDGKQYLYPRLLFIITGKG 326 (474)
Q Consensus 298 ---------------------------------------~~~~~~~~~-~-----------~~~~~~~~~~~~l~ivG~g 326 (474)
++.+..|+. - ........|-+.-.++-
T Consensus 392 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~-- 469 (725)
T 3nb0_A 392 QAEVRALENTVHEVTTSIGKRIFDHAIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVD-- 469 (725)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETT--
T ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeeccc--
Confidence 011111100 0 00000112322223322
Q ss_pred CChHHHHHHHHHcCC-C------cEEEecCCCCcc------cHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEE
Q 011969 327 PDKESYEEKIRRLRL-K------RVAFRTMWLSAE------DYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVC 393 (474)
Q Consensus 327 ~~~~~~~~~~~~l~l-~------~V~f~g~~v~~~------~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVi 393 (474)
...+.+...++++++ + +|.|.+.|++.. ++..+|+.||++|+ ||..|+||++++||||||+|||
T Consensus 470 ~~~D~Il~~~r~l~L~N~~~drVKVIf~P~~L~~~d~lf~~d~~~~~~~advfV~---PS~~EgfGl~~LEAmA~G~PvI 546 (725)
T 3nb0_A 470 DANDLILNKIRQVQLFNSPSDRVKMIFHPEFLNANNPILGLDYDEFVRGCHLGVF---PSYYEPWGYTPAECTVMGVPSI 546 (725)
T ss_dssp GGGCHHHHHHHHHTCCCCTTCSEEEEECCSCCCTTCSSSCCCHHHHHHHCSEEEC---CCSSBSSCHHHHHHHHTTCCEE
T ss_pred CCccHHHHHHHhcCCCCCcCCceeEEEeccccCCCCccchhHHHHHHhhceEEEe---ccccCCCCHHHHHHHHcCCCEE
Confidence 224567888899988 3 389999889887 59999999999999 7899999999999999999999
Q ss_pred EecccccccccccC-------CcEEEeC-----CHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhccccchHHHHHHH
Q 011969 394 AVSYSCIEELVKVD-------KNGLLFS-----SSSELADQLLMLFKGFP-DDSDVLKKLRNGTLEMGLSARWATEWEEH 460 (474)
Q Consensus 394 a~~~~~~~e~v~~~-------~~G~l~~-----~~~~la~~i~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 460 (474)
+++.+|..+.|.++ .+|+++. ++++++++|...+..+. .++..++++++++++++..++|+...+++
T Consensus 547 ~s~~gG~~d~V~dg~~~~~~~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A~~FSWe~iA~~Y 626 (725)
T 3nb0_A 547 TTNVSGFGSYMEDLIETNQAKDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLEY 626 (725)
T ss_dssp EETTBHHHHHHHTTSCHHHHHHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGGGGGBHHHHHHHH
T ss_pred EeCCCChhhhhhccccccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999998775 3798772 45555555544443111 15788899999999988899999877665
Q ss_pred HHH
Q 011969 461 AKP 463 (474)
Q Consensus 461 ~~~ 463 (474)
.+.
T Consensus 627 l~~ 629 (725)
T 3nb0_A 627 VKA 629 (725)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 25
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.90 E-value=3.5e-23 Score=210.13 Aligned_cols=267 Identities=16% Similarity=0.085 Sum_probs=177.9
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (474)
.+||+||+++... ..+.+.++++..++|+++..++... .....++. ....++.+.+.+|.++++|+..++
T Consensus 90 ~~pDvv~~~~~~~--~~~~~~~~a~~~~ip~v~~~~~~~~------~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~ 159 (376)
T 1v4v_A 90 MGADYVLVHGDTL--TTFAVAWAAFLEGIPVGHVEAGLRS------GNLKEPFP--EEANRRLTDVLTDLDFAPTPLAKA 159 (376)
T ss_dssp TTCSEEEEESSCH--HHHHHHHHHHHTTCCEEEETCCCCC------SCTTSSTT--HHHHHHHHHHHCSEEEESSHHHHH
T ss_pred cCCCEEEEeCChH--HHHHHHHHHHHhCCCEEEEeCCCcc------ccccCCCc--hHHHHHHHHHHhceeeCCCHHHHH
Confidence 7899999997532 2223455677788998654433310 01101110 112344566789999999999998
Q ss_pred HHHHHhCCc---eEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCC
Q 011969 180 ELAQNWGIK---ATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKP 256 (474)
Q Consensus 180 ~l~~~~~~~---~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (474)
.+.+. |.+ +.+++|+..+.+.. ......+. . .+ +
T Consensus 160 ~l~~~-g~~~~ki~vi~n~~~d~~~~------~~~~~~~~-----------------------------~------~~-~ 196 (376)
T 1v4v_A 160 NLLKE-GKREEGILVTGQTGVDAVLL------AAKLGRLP-----------------------------E------GL-P 196 (376)
T ss_dssp HHHTT-TCCGGGEEECCCHHHHHHHH------HHHHCCCC-----------------------------T------TC-C
T ss_pred HHHHc-CCCcceEEEECCchHHHHhh------hhhhhHHH-----------------------------H------hc-C
Confidence 88764 653 66666642111100 00000000 0 01 2
Q ss_pred CCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEE-eCCC-ChHHHHH
Q 011969 257 NRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT-GKGP-DKESYEE 334 (474)
Q Consensus 257 ~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv-G~g~-~~~~~~~ 334 (474)
+++++++++|++...||++.+++|+..+.++ .|+++++++ |+++ ..+.+++
T Consensus 197 ~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~---------------------------~~~~~lv~~~g~~~~~~~~l~~ 249 (376)
T 1v4v_A 197 EGPYVTVTMHRRENWPLLSDLAQALKRVAEA---------------------------FPHLTFVYPVHLNPVVREAVFP 249 (376)
T ss_dssp SSCEEEECCCCGGGGGGHHHHHHHHHHHHHH---------------------------CTTSEEEEECCSCHHHHHHHHH
T ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHHHhh---------------------------CCCeEEEEECCCCHHHHHHHHH
Confidence 3455778899998778999999999998763 678888886 7665 2444554
Q ss_pred HHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec-ccccccccccCCcEEEe
Q 011969 335 KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS-YSCIEELVKVDKNGLLF 413 (474)
Q Consensus 335 ~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~-~~~~~e~v~~~~~G~l~ 413 (474)
.++. .++|.|+|. ++..++..+|+.||++|+ +| + |. ++|||+||+|||+++ .++..+++.. ++|+++
T Consensus 250 ~~~~--~~~v~~~g~-~g~~~~~~~~~~ad~~v~---~S--~--g~-~lEA~a~G~PvI~~~~~~~~~~~~~~-g~g~lv 317 (376)
T 1v4v_A 250 VLKG--VRNFVLLDP-LEYGSMAALMRASLLLVT---DS--G--GL-QEEGAALGVPVVVLRNVTERPEGLKA-GILKLA 317 (376)
T ss_dssp HHTT--CTTEEEECC-CCHHHHHHHHHTEEEEEE---SC--H--HH-HHHHHHTTCCEEECSSSCSCHHHHHH-TSEEEC
T ss_pred Hhcc--CCCEEEECC-CCHHHHHHHHHhCcEEEE---CC--c--CH-HHHHHHcCCCEEeccCCCcchhhhcC-CceEEC
Confidence 4432 368999987 777899999999999998 45 2 33 789999999999984 6888887754 589999
Q ss_pred -CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Q 011969 414 -SSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLIT 466 (474)
Q Consensus 414 -~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 466 (474)
.|+++|+++|.+++++ ++.+++|++++. .+.|...++++++.+.+
T Consensus 318 ~~d~~~la~~i~~ll~d----~~~~~~~~~~~~----~~~~~~~~~~i~~~i~~ 363 (376)
T 1v4v_A 318 GTDPEGVYRVVKGLLEN----PEELSRMRKAKN----PYGDGKAGLMVARGVAW 363 (376)
T ss_dssp CSCHHHHHHHHHHHHTC----HHHHHHHHHSCC----SSCCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhC----hHhhhhhcccCC----CCCCChHHHHHHHHHHH
Confidence 5899999999999984 888888887443 45555566665554433
No 26
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.89 E-value=5.1e-22 Score=211.12 Aligned_cols=282 Identities=9% Similarity=0.023 Sum_probs=187.2
Q ss_pred cCCCCEEEEeCCCChhHHHHHHHHHh-hCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHH
Q 011969 99 IASPDVFLVQNPPSVPTLVAVKWASS-LRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAM 177 (474)
Q Consensus 99 ~~~~Dvi~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~ 177 (474)
..++|+||+|+... .++...++. ..+.|+++.+|....... .+. ..+.. ..+-+. ...+|.+...+...
T Consensus 121 ~~~~DiV~vHdyhl---~~l~~~lr~~~~~~~i~~~~H~pfp~~~--~~~-~lp~~---~~il~~-ll~~d~i~f~~~~~ 190 (482)
T 1uqt_A 121 LQDDDIIWIHDYHL---LPFAHELRKRGVNNRIGFFLHIPFPTPE--IFN-ALPTY---DTLLEQ-LCDYDLLGFQTEND 190 (482)
T ss_dssp CCTTCEEEEESGGG---TTHHHHHHHTTCCSCEEEECCSCCCCHH--HHT-TSTTH---HHHHHH-HTTSSEEEESSHHH
T ss_pred cCCCCEEEEECchH---HHHHHHHHHhCCCCcEEEEEcCCCCCHH--HHh-hCccH---HHHHHh-hhccCeEEEECHHH
Confidence 35689999998532 223444444 347999999998521110 001 11111 011111 12567777777655
Q ss_pred HHHHHHH-----------------hC--CceEEEeCCCC-CCCCCCCh----HHHHHHHHhhhhccCCCCCccccccccc
Q 011969 178 QHELAQN-----------------WG--IKATVLYDQPP-EFFHPTSL----EEKHELFCRLNKILHQPLGVQDCVSNAG 233 (474)
Q Consensus 178 ~~~l~~~-----------------~~--~~~~vi~n~~~-~~f~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 233 (474)
.+.+... ++ .++.++|||.+ +.|.+... .+..+++++++
T Consensus 191 ~~~f~~~~~~~l~~~~~~~~~~~~~g~~~~v~vip~GID~~~f~~~~~~~~~~~~~~lr~~~~----------------- 253 (482)
T 1uqt_A 191 RLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELK----------------- 253 (482)
T ss_dssp HHHHHHHHHHHSCEEEETTTEEEETTEEEEEEECCCCCCHHHHHHHHHSCCCHHHHHHHHHTT-----------------
T ss_pred HHHHHHHHHHHhCCccccCCeEEECCeEEEEEEEeccCCHHHHHHHhcCcchHHHHHHHHHhC-----------------
Confidence 5443321 12 23778888854 44432100 00233444432
Q ss_pred cCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccc
Q 011969 234 MEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQY 313 (474)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (474)
++ .+|+++||+.+.||++.+++|+..+.++
T Consensus 254 -----------------------~~-~vil~VgRl~~~Kgi~~ll~A~~~ll~~-------------------------- 283 (482)
T 1uqt_A 254 -----------------------NV-QNIFSVERLDYSKGLPERFLAYEALLEK-------------------------- 283 (482)
T ss_dssp -----------------------TC-EEEEEECCBCGGGCHHHHHHHHHHHHHH--------------------------
T ss_pred -----------------------CC-EEEEEEeCCcccCCHHHHHHHHHHHHHh--------------------------
Confidence 23 3899999999999999999999998764
Q ss_pred cCC----CEEEEEEeCC-----CCh----HHHHHHHHHcC----C---CcEEEecCCCCcccHHHHHhcccEEEeeccCC
Q 011969 314 LYP----RLLFIITGKG-----PDK----ESYEEKIRRLR----L---KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS 373 (474)
Q Consensus 314 ~~~----~~~l~ivG~g-----~~~----~~~~~~~~~l~----l---~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s 373 (474)
+| +++|+++|.+ ++. +++++.+.+++ . ..|.|+++.++.+++..+|+.||++|+ +|
T Consensus 284 -~p~~~~~v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~ADv~v~---pS 359 (482)
T 1uqt_A 284 -YPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLV---TP 359 (482)
T ss_dssp -CGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCSEEEE---CC
T ss_pred -CccccCcEEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHccEEEE---CC
Confidence 34 4889999953 222 33444444432 1 247776555999999999999999999 78
Q ss_pred CCCCCchHHHHHHhcCC-----cEEEecccccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011969 374 SGLDLPMKVVDMFGCGL-----PVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 446 (474)
Q Consensus 374 ~~e~~p~kv~Eama~G~-----PVia~~~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 446 (474)
..||||++++||||||+ |||+|+.+|..+.+. +|++++ |+++++++|..++++ ++++++++.+++++
T Consensus 360 ~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~l~---~g~lv~p~d~~~lA~ai~~lL~~---~~~~r~~~~~~~~~ 433 (482)
T 1uqt_A 360 LRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANELT---SALIVNPYDRDEVAAALDRALTM---SLAERISRHAEMLD 433 (482)
T ss_dssp SSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTCT---TSEEECTTCHHHHHHHHHHHHTC---CHHHHHHHHHHHHH
T ss_pred CcccCCchHHHHHHhCCCCCCCCEEEECCCCCHHHhC---CeEEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Confidence 89999999999999997 899999877777772 789986 799999999999985 56778888888888
Q ss_pred hccccchHHHHHHHHHHHHHHH
Q 011969 447 MGLSARWATEWEEHAKPLITEV 468 (474)
Q Consensus 447 ~~~~~~w~~~~~~~~~~~~~~~ 468 (474)
....++|+. |.+.....++++
T Consensus 434 ~v~~~s~~~-~a~~~l~~l~~~ 454 (482)
T 1uqt_A 434 VIVKNDINH-WQECFISDLKQI 454 (482)
T ss_dssp HHHHTCHHH-HHHHHHHHHHHS
T ss_pred HHHhCCHHH-HHHHHHHHHHhc
Confidence 777788765 544444444443
No 27
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.89 E-value=6.3e-23 Score=188.15 Aligned_cols=154 Identities=21% Similarity=0.199 Sum_probs=135.7
Q ss_pred ccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHH
Q 011969 253 FLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 332 (474)
Q Consensus 253 ~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~ 332 (474)
.++.+++ +++|+|++.+.||++.+++|+..+ ++++|+|+|.|++.+++
T Consensus 18 ~~~~~~~-~i~~~G~~~~~Kg~~~li~a~~~l-------------------------------~~~~l~i~G~~~~~~~l 65 (177)
T 2f9f_A 18 KFKCYGD-FWLSVNRIYPEKRIELQLEVFKKL-------------------------------QDEKLYIVGWFSKGDHA 65 (177)
T ss_dssp CCCCCCS-CEEEECCSSGGGTHHHHHHHHHHC-------------------------------TTSCEEEEBCCCTTSTH
T ss_pred ccCCCCC-EEEEEeccccccCHHHHHHHHHhC-------------------------------CCcEEEEEecCccHHHH
Confidence 3555666 789999999999999999999875 56899999999988889
Q ss_pred HHHHH--HcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCc
Q 011969 333 EEKIR--RLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKN 409 (474)
Q Consensus 333 ~~~~~--~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~ 409 (474)
++.++ ++++ ++|.|.|. ++.+++..+|+.||++++ ++..|++|++++|||+||+|||+++.++..|++.++.+
T Consensus 66 ~~~~~~~~~~l~~~v~~~g~-~~~~e~~~~~~~adi~v~---ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i~~~~~ 141 (177)
T 2f9f_A 66 ERYARKIMKIAPDNVKFLGS-VSEEELIDLYSRCKGLLC---TAKDEDFGLTPIEAMASGKPVIAVNEGGFKETVINEKT 141 (177)
T ss_dssp HHHHHHHHHHSCTTEEEEES-CCHHHHHHHHHHCSEEEE---CCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHCCBTTT
T ss_pred HHHHHhhhcccCCcEEEeCC-CCHHHHHHHHHhCCEEEe---CCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHhcCCCc
Confidence 99999 7778 69999998 999999999999999999 67789999999999999999999999999999999999
Q ss_pred EEEe-CCHHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHH
Q 011969 410 GLLF-SSSSELADQLLMLFKGFPDDSDV-LKKLRNGTLE 446 (474)
Q Consensus 410 G~l~-~~~~~la~~i~~l~~~~~~~~~~-~~~~~~~~~~ 446 (474)
|+++ .|+++++++|.+++++ ++. ++++++++++
T Consensus 142 g~~~~~d~~~l~~~i~~l~~~----~~~~~~~~~~~a~~ 176 (177)
T 2f9f_A 142 GYLVNADVNEIIDAMKKVSKN----PDKFKKDCFRRAKE 176 (177)
T ss_dssp EEEECSCHHHHHHHHHHHHHC----TTTTHHHHHHHHHT
T ss_pred cEEeCCCHHHHHHHHHHHHhC----HHHHHHHHHHHHhc
Confidence 9998 5799999999999986 333 5666666653
No 28
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.89 E-value=5.9e-22 Score=203.59 Aligned_cols=236 Identities=16% Similarity=0.127 Sum_probs=169.9
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (474)
.+||++|++.+..++.. +..+.+ |+++..+.+ .... +.+.+++.+|.++++|+..++
T Consensus 110 ~~pDiv~~~~~~~~~~~-----~~~~~~-p~~~~~~~~---------~~~~--------~~~~~~~~~d~ii~~S~~~~~ 166 (374)
T 2xci_A 110 SKPKALIVVEREFWPSL-----IIFTKV-PKILVNAYA---------KGSL--------IEKILSKKFDLIIMRTQEDVE 166 (374)
T ss_dssp HCCSEEEEESCCCCHHH-----HHHCCS-CEEEEEECC---------CCCH--------HHHHHHTTCSEEEESCHHHHH
T ss_pred hCCCEEEEECccCcHHH-----HHHHhC-CEEEEEeec---------CchH--------HHHHHHHhCCEEEECCHHHHH
Confidence 68999998765444433 122333 766543332 1111 445667889999999999999
Q ss_pred HHHHHhCC-ceEEEeCCCCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCC
Q 011969 180 ELAQNWGI-KATVLYDQPPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNR 258 (474)
Q Consensus 180 ~l~~~~~~-~~~vi~n~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (474)
.+.+. |. ++.+++|+. |.+.... . . .+ ..
T Consensus 167 ~l~~~-g~~ki~vi~n~~---f~~~~~~-~----~---------------------------------------~l--~~ 196 (374)
T 2xci_A 167 KFKTF-GAKRVFSCGNLK---FICQKGK-G----I---------------------------------------KL--KG 196 (374)
T ss_dssp HHHTT-TCCSEEECCCGG---GCCCCCS-C----C---------------------------------------CC--SS
T ss_pred HHHHc-CCCeEEEcCCCc---cCCCcCh-h----h---------------------------------------hh--cC
Confidence 98774 65 477887751 2221100 0 0 01 11
Q ss_pred CeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh-HHHHHHHH
Q 011969 259 PALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-ESYEEKIR 337 (474)
Q Consensus 259 ~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~-~~~~~~~~ 337 (474)
+ +++++|+ ..||++.|++|++.+.+ ..|+++|+|+|+|++. +++++.++
T Consensus 197 ~-vi~~~~~--~~k~~~~ll~A~~~l~~---------------------------~~p~~~lvivG~g~~~~~~l~~~~~ 246 (374)
T 2xci_A 197 E-FIVAGSI--HTGEVEIILKAFKEIKK---------------------------TYSSLKLILVPRHIENAKIFEKKAR 246 (374)
T ss_dssp C-EEEEEEE--CGGGHHHHHHHHHHHHT---------------------------TCTTCEEEEEESSGGGHHHHHHHHH
T ss_pred C-EEEEEeC--CCchHHHHHHHHHHHHh---------------------------hCCCcEEEEECCCHHHHHHHHHHHH
Confidence 3 5666665 35799999999999876 3689999999999887 58999999
Q ss_pred HcCCC---------cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEe-ccccccccccc-
Q 011969 338 RLRLK---------RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV-SYSCIEELVKV- 406 (474)
Q Consensus 338 ~l~l~---------~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~-~~~~~~e~v~~- 406 (474)
++++. +|.+.|. .+|+..+|+.||++++| +|..+.+|++++||||||+|||++ +.++..|++.+
T Consensus 247 ~~gl~~~~~~~~~~~v~~~~~---~~dl~~~y~~aDv~vl~--ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~ 321 (374)
T 2xci_A 247 DFGFKTSFFENLEGDVILVDR---FGILKELYPVGKIAIVG--GTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFL 321 (374)
T ss_dssp HTTCCEEETTCCCSSEEECCS---SSCHHHHGGGEEEEEEC--SSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHH
T ss_pred HCCCceEEecCCCCcEEEECC---HHHHHHHHHhCCEEEEC--CcccCCCCcCHHHHHHhCCCEEECCCccChHHHHHHH
Confidence 99874 5777775 68999999999999985 445566889999999999999985 67888887754
Q ss_pred --CCcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 407 --DKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 407 --~~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
.+.++.+.|+++|+++|..+++ | +.+++|++++++.+
T Consensus 322 ~~~G~l~~~~d~~~La~ai~~ll~----d-~~r~~mg~~ar~~~ 360 (374)
T 2xci_A 322 EKEGAGFEVKNETELVTKLTELLS----V-KKEIKVEEKSREIK 360 (374)
T ss_dssp HHTTCEEECCSHHHHHHHHHHHHH----S-CCCCCHHHHHHHHH
T ss_pred HHCCCEEEeCCHHHHHHHHHHHHh----H-HHHHHHHHHHHHHH
Confidence 3334444689999999999998 5 56778888888754
No 29
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.83 E-value=5e-19 Score=187.79 Aligned_cols=268 Identities=11% Similarity=-0.026 Sum_probs=181.6
Q ss_pred CCCEEEEeCCCChhHHHHHHHHH-hhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHH
Q 011969 101 SPDVFLVQNPPSVPTLVAVKWAS-SLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (474)
Q Consensus 101 ~~Dvi~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (474)
.-|+|++|+.+.++ +...++ +..+.++.+.+|-...+.. .+ +.-+.. .-..+-+-+ -.||.|..-+....+
T Consensus 149 ~~D~VwVhDYhL~l---lp~~lR~~~~~~~igfFlHiPfPs~e--~f-~~Lp~~-~r~ell~gl-l~~DligF~t~~y~~ 220 (496)
T 3t5t_A 149 ADPVYLVHDYQLVG---VPALLREQRPDAPILLFVHIPWPSAD--YW-RILPKE-IRTGILHGM-LPATTIGFFADRWCR 220 (496)
T ss_dssp SSCEEEEESGGGTT---HHHHHHHHCTTSCEEEECCSCCCCHH--HH-TTSCHH-HHHHHHHHH-TTSSEEEESSHHHHH
T ss_pred CCCEEEEeCccHhH---HHHHHHhhCCCCeEEEEEcCCCCCHH--HH-hhCcHh-HHHHHHHHH-HhCCEEEEecHHHHH
Confidence 57899999954332 233344 3557889999997621110 01 111100 001222222 379999999997776
Q ss_pred HHHH----Hh-CC----------------ceEEEeCC-CCCCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCc
Q 011969 180 ELAQ----NW-GI----------------KATVLYDQ-PPEFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQ 237 (474)
Q Consensus 180 ~l~~----~~-~~----------------~~~vi~n~-~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 237 (474)
.+.+ .. |. ++.++|+| +++.|.+...+.+.+++++++
T Consensus 221 ~Fl~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~~~~~lr~~~~--------------------- 279 (496)
T 3t5t_A 221 NFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQLPEGIEEWAD--------------------- 279 (496)
T ss_dssp HHHHHHHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CCCCTTHHHHHT---------------------
T ss_pred HHHHHHHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHHHHHHHHHHhC---------------------
Confidence 5432 22 21 25678888 445665543211123333333
Q ss_pred CcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCC-
Q 011969 238 KADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYP- 316 (474)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 316 (474)
++ .+|+++||+.+.||++.+++|+ .+.++ +|
T Consensus 280 -------------------~~-~lIl~VgRLd~~KGi~~lL~Af-~ll~~---------------------------~P~ 311 (496)
T 3t5t_A 280 -------------------GH-RLVVHSGRTDPIKNAERAVRAF-VLAAR---------------------------GGG 311 (496)
T ss_dssp -------------------TS-EEEEEEEESSGGGCHHHHHHHH-HHHHH---------------------------TSS
T ss_pred -------------------Cc-eEEEEcccCccccCHHHHHHHH-HHHHh---------------------------Ccc
Confidence 22 3899999999999999999999 77653 45
Q ss_pred --CEEEEEEeC-----CCChHHH----HHHHHHcCC----CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchH
Q 011969 317 --RLLFIITGK-----GPDKESY----EEKIRRLRL----KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMK 381 (474)
Q Consensus 317 --~~~l~ivG~-----g~~~~~~----~~~~~~l~l----~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~k 381 (474)
++.|+++|. +++.+++ ++++.+++. ..|.|+|. ++.+++..+|+.||++|+ +|..||||++
T Consensus 312 ~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~~V~f~g~-v~~~el~aly~~ADv~vv---~SlrEGfgLv 387 (496)
T 3t5t_A 312 LEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTVRIDND-NDVNHTIACFRRADLLIF---NSTVDGQNLS 387 (496)
T ss_dssp CTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEC-CCHHHHHHHHHHCSEEEE---CCSSBSCCSH
T ss_pred cceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCcCEEEeCC-CCHHHHHHHHHhccEEEE---CcccccCChh
Confidence 467888873 3333333 444444332 26999998 999999999999999999 7999999999
Q ss_pred HHHHHhcC---CcEEEecccccccccccCCcEEEeC--CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchH
Q 011969 382 VVDMFGCG---LPVCAVSYSCIEELVKVDKNGLLFS--SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWA 454 (474)
Q Consensus 382 v~Eama~G---~PVia~~~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 454 (474)
.+|||||| .|+|.|..+|..+.+. .+|++++ |+++++++|..+++. ++++++++.+..++..+++++.
T Consensus 388 ~~EamA~~~~~g~lVlSe~aGa~~~l~--~~allVnP~D~~~lA~AI~~aL~m---~~~er~~r~~~~~~~V~~~d~~ 460 (496)
T 3t5t_A 388 TFEAPLVNERDADVILSETCGAAEVLG--EYCRSVNPFDLVEQAEAISAALAA---GPRQRAEAAARRRDAARPWTLE 460 (496)
T ss_dssp HHHHHHHCSSCCEEEEETTBTTHHHHG--GGSEEECTTBHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHTTCBHH
T ss_pred HHHHHHhCCCCCCEEEeCCCCCHHHhC--CCEEEECCCCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHCCHH
Confidence 99999997 8999999888888773 4789996 799999999999996 5677788788888877666553
No 30
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.83 E-value=8.2e-19 Score=179.55 Aligned_cols=326 Identities=17% Similarity=0.146 Sum_probs=193.7
Q ss_pred ceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHH
Q 011969 5 GRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKP 84 (474)
Q Consensus 5 ~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (474)
++++|...|.=|+-.+..-.|..|.++ ||+|.+++.... .........|++++.++......+.... .+..+.++
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~-g~~V~~vg~~~g-~e~~~v~~~g~~~~~i~~~~~~~~~~~~---~~~~~~~~ 77 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQAR-GYAVHWLGTPRG-IENDLVPKAGLPLHLIQVSGLRGKGLKS---LVKAPLEL 77 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHT-TCEEEEEECSSS-THHHHTGGGTCCEEECC-----------------CHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCch-HhhchhhhcCCcEEEEECCCcCCCCHHH---HHHHHHHH
Confidence 356654443212223344456677775 999999985432 2233455568888888732221111111 11112222
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHh
Q 011969 85 LIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYG 164 (474)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 164 (474)
+..+... +.++ +..+||+|++.... .+. .+.+++++.++|++++-+|.. .+ ...+++.
T Consensus 78 ~~~~~~~-~~~l-~~~~PDvVi~~g~~--~s~-p~~laA~~~~iP~vihe~n~~-------~G----------~~nr~l~ 135 (365)
T 3s2u_A 78 LKSLFQA-LRVI-RQLRPVCVLGLGGY--VTG-PGGLAARLNGVPLVIHEQNAV-------AG----------TANRSLA 135 (365)
T ss_dssp HHHHHHH-HHHH-HHHCCSEEEECSSS--THH-HHHHHHHHTTCCEEEEECSSS-------CC----------HHHHHHG
T ss_pred HHHHHHH-HHHH-HhcCCCEEEEcCCc--chH-HHHHHHHHcCCCEEEEecchh-------hh----------hHHHhhc
Confidence 2221111 1222 23799999988642 233 355667888999997665541 11 2345567
Q ss_pred hhcCEEEEeCHHHHHHHHHHhCCceEEEeCCCC-CCCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhh
Q 011969 165 KMANGCLCVTQAMQHELAQNWGIKATVLYDQPP-EFFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETI 243 (474)
Q Consensus 165 ~~ad~vi~vS~~~~~~l~~~~~~~~~vi~n~~~-~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (474)
+.|+.+++..+.... ...+..+..+... +.+....
T Consensus 136 ~~a~~v~~~~~~~~~-----~~~k~~~~g~pvr~~~~~~~~--------------------------------------- 171 (365)
T 3s2u_A 136 PIARRVCEAFPDTFP-----ASDKRLTTGNPVRGELFLDAH--------------------------------------- 171 (365)
T ss_dssp GGCSEEEESSTTSSC-----C---CEECCCCCCGGGCCCTT---------------------------------------
T ss_pred cccceeeeccccccc-----CcCcEEEECCCCchhhccchh---------------------------------------
Confidence 889988776553210 0112333333221 1111110
Q ss_pred hhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEE-EE
Q 011969 244 FTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF-II 322 (474)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~i 322 (474)
....+.++++.++++.|+.+..+..+.+.+++..+.. ..++.+ ++
T Consensus 172 ------~~~~~~~~~~~ilv~gGs~g~~~~~~~~~~al~~l~~----------------------------~~~~~vi~~ 217 (365)
T 3s2u_A 172 ------ARAPLTGRRVNLLVLGGSLGAEPLNKLLPEALAQVPL----------------------------EIRPAIRHQ 217 (365)
T ss_dssp ------SSCCCTTSCCEEEECCTTTTCSHHHHHHHHHHHTSCT----------------------------TTCCEEEEE
T ss_pred ------hhcccCCCCcEEEEECCcCCccccchhhHHHHHhccc----------------------------ccceEEEEe
Confidence 0012345667788888999888777888888877643 123444 44
Q ss_pred EeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccccc--
Q 011969 323 TGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI-- 400 (474)
Q Consensus 323 vG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~-- 400 (474)
+|.+ +.+.+.+..+.++. ++.+.++ .+|+..+|..||++|+ ..| ++++.|+|++|+|+|..+.+..
T Consensus 218 ~G~~-~~~~~~~~~~~~~~-~~~v~~f---~~dm~~~l~~aDlvI~----raG---~~Tv~E~~a~G~P~Ilip~p~~~~ 285 (365)
T 3s2u_A 218 AGRQ-HAEITAERYRTVAV-EADVAPF---ISDMAAAYAWADLVIC----RAG---ALTVSELTAAGLPAFLVPLPHAID 285 (365)
T ss_dssp CCTT-THHHHHHHHHHTTC-CCEEESC---CSCHHHHHHHCSEEEE----CCC---HHHHHHHHHHTCCEEECC-----C
T ss_pred cCcc-ccccccceeccccc-ccccccc---hhhhhhhhccceEEEe----cCC---cchHHHHHHhCCCeEEeccCCCCC
Confidence 5543 45566666676664 6777887 5899999999999997 233 6799999999999998875432
Q ss_pred ------ccccccCCcEEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcccc
Q 011969 401 ------EELVKVDKNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSA 451 (474)
Q Consensus 401 ------~e~v~~~~~G~l~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (474)
++.+.+.+.|++++ ++++|+++|.+++++ ++.+++|++++++.+...
T Consensus 286 ~~Q~~NA~~l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d----~~~~~~m~~~a~~~~~~~ 342 (365)
T 3s2u_A 286 DHQTRNAEFLVRSGAGRLLPQKSTGAAELAAQLSEVLMH----PETLRSMADQARSLAKPE 342 (365)
T ss_dssp CHHHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHC----THHHHHHHHHHHHTCCTT
T ss_pred cHHHHHHHHHHHCCCEEEeecCCCCHHHHHHHHHHHHCC----HHHHHHHHHHHHhcCCcc
Confidence 24466667888875 588999999999995 899999999999976444
No 31
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.82 E-value=7.7e-19 Score=179.97 Aligned_cols=338 Identities=13% Similarity=0.037 Sum_probs=205.8
Q ss_pred ceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecC-------------CC-CCC-
Q 011969 5 GRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQW-------------PT-IPR- 69 (474)
Q Consensus 5 ~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~-------------~~-~~~- 69 (474)
.+++++..+..|...++...+..|.++ ||+|++++... ........|++++.++.. .. ...
T Consensus 21 MrIl~~~~~~~Gh~~~~~~la~~L~~~-GheV~v~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 3otg_A 21 MRVLFASLGTHGHTYPLLPLATAARAA-GHEVTFATGEG---FAGTLRKLGFEPVATGMPVFDGFLAALRIRFDTDSPEG 96 (412)
T ss_dssp CEEEEECCSSHHHHGGGHHHHHHHHHT-TCEEEEEECGG---GHHHHHHTTCEEEECCCCHHHHHHHHHHHHHSCSCCTT
T ss_pred eEEEEEcCCCcccHHHHHHHHHHHHHC-CCEEEEEccHH---HHHHHHhcCCceeecCcccccchhhhhhhhhcccCCcc
Confidence 356666666556566677788899886 99999999653 234455678999988720 00 000
Q ss_pred -C-CCchhHHHHHHHHH-HHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhcc
Q 011969 70 -G-LPKVLKPVLLLLKP-LIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSL 146 (474)
Q Consensus 70 -~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~ 146 (474)
. ..........+... ......-+...+. ..+||+|+++.. .. .+.++++..++|+|+..|++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~pDvVv~~~~-~~----~~~~aa~~~giP~v~~~~~~~~------- 163 (412)
T 3otg_A 97 LTPEQLSELPQIVFGRVIPQRVFDELQPVIE-RLRPDLVVQEIS-NY----GAGLAALKAGIPTICHGVGRDT------- 163 (412)
T ss_dssp CCHHHHTTSHHHHHHTHHHHHHHHHHHHHHH-HHCCSEEEEETT-CH----HHHHHHHHHTCCEEEECCSCCC-------
T ss_pred CChhHhhHHHHHHHhccchHHHHHHHHHHHH-hcCCCEEEECch-hh----HHHHHHHHcCCCEEEecccccC-------
Confidence 0 00000011111111 0010111222222 268999988852 11 2445667788999999888631
Q ss_pred CCCchHHHHHHHHHHHHhh------------hcCEEEEeCHHHHHHHHHHhCCc-eEEEeCCCCCCCCCCChHHHHHHHH
Q 011969 147 GRRSHFVSIYRWIEKYYGK------------MANGCLCVTQAMQHELAQNWGIK-ATVLYDQPPEFFHPTSLEEKHELFC 213 (474)
Q Consensus 147 ~~~~~~~~~~~~~e~~~~~------------~ad~vi~vS~~~~~~l~~~~~~~-~~vi~n~~~~~f~~~~~~~~~~~~~ 213 (474)
.......+.+++.+...+ .+|.+++.+....+......... ..+.+.+.. ... .. .
T Consensus 164 -~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~----~ 232 (412)
T 3otg_A 164 -PDDLTRSIEEEVRGLAQRLGLDLPPGRIDGFGNPFIDIFPPSLQEPEFRARPRRHELRPVPFA----EQG--DL----P 232 (412)
T ss_dssp -CSHHHHHHHHHHHHHHHHTTCCCCSSCCGGGGCCEEECSCGGGSCHHHHTCTTEEECCCCCCC----CCC--CC----C
T ss_pred -chhhhHHHHHHHHHHHHHcCCCCCcccccCCCCeEEeeCCHHhcCCcccCCCCcceeeccCCC----CCC--CC----C
Confidence 111122333344444333 56788888876665554433222 111111100 000 00 0
Q ss_pred hh-hhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhh
Q 011969 214 RL-NKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAIL 292 (474)
Q Consensus 214 ~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~ 292 (474)
++ + ...++++.++++.|++. .++.+.+.+++..+.+
T Consensus 233 ~~~~------------------------------------~~~~~~~~vlv~~G~~~-~~~~~~~~~~~~~l~~------ 269 (412)
T 3otg_A 233 AWLS------------------------------------SRDTARPLVYLTLGTSS-GGTVEVLRAAIDGLAG------ 269 (412)
T ss_dssp GGGG------------------------------------GSCTTSCEEEEECTTTT-CSCHHHHHHHHHHHHT------
T ss_pred Cccc------------------------------------cccCCCCEEEEEcCCCC-cCcHHHHHHHHHHHHc------
Confidence 00 0 01355677888999996 6788888777777654
Q ss_pred ccCCCchhhHhHhhhcCCccccCCCEEEEEEeCC-CChHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeec
Q 011969 293 NEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG-PDKESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLH 370 (474)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g-~~~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~ 370 (474)
. +.++++++++ +..+.++ ++ ++|.|.|. + ++..+|..||++|+
T Consensus 270 ----------------------~-~~~~~~~~g~~~~~~~l~------~~~~~v~~~~~-~---~~~~~l~~ad~~v~-- 314 (412)
T 3otg_A 270 ----------------------L-DADVLVASGPSLDVSGLG------EVPANVRLESW-V---PQAALLPHVDLVVH-- 314 (412)
T ss_dssp ----------------------S-SSEEEEECCSSCCCTTCC------CCCTTEEEESC-C---CHHHHGGGCSEEEE--
T ss_pred ----------------------C-CCEEEEEECCCCChhhhc------cCCCcEEEeCC-C---CHHHHHhcCcEEEE--
Confidence 2 3555555544 3233332 23 68999987 4 59999999999997
Q ss_pred cCCCCCCCchHHHHHHhcCCcEEEeccc----ccccccccCCcEEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 011969 371 TSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELVKVDKNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRN 442 (474)
Q Consensus 371 ~~s~~e~~p~kv~Eama~G~PVia~~~~----~~~e~v~~~~~G~l~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~ 442 (474)
.+ | +++++|||++|+|+|+++.+ +..+.+.+.++|++++ |+++|+++|..++++ ++.+++|++
T Consensus 315 -~~-g---~~t~~Ea~a~G~P~v~~p~~~~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~----~~~~~~~~~ 385 (412)
T 3otg_A 315 -HG-G---SGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAE----ESYRAGARA 385 (412)
T ss_dssp -SC-C---HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHC----HHHHHHHHH
T ss_pred -CC-c---hHHHHHHHHhCCCEEecCCchhHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhC----HHHHHHHHH
Confidence 33 2 36899999999999997654 4677888888999985 689999999999994 889999999
Q ss_pred HHHHhccccchHHHH
Q 011969 443 GTLEMGLSARWATEW 457 (474)
Q Consensus 443 ~~~~~~~~~~w~~~~ 457 (474)
.+.++....+|+...
T Consensus 386 ~~~~~~~~~~~~~~~ 400 (412)
T 3otg_A 386 VAAEIAAMPGPDEVV 400 (412)
T ss_dssp HHHHHHHSCCHHHHH
T ss_pred HHHHHhcCCCHHHHH
Confidence 999887677776544
No 32
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.81 E-value=6e-19 Score=182.66 Aligned_cols=257 Identities=14% Similarity=0.134 Sum_probs=170.4
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchH-HHHHHHHHHHHhhhcCEEEEeCHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHF-VSIYRWIEKYYGKMANGCLCVTQAMQ 178 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (474)
.+||+|+++.... +.+.+.++++..++|++...++.. +....+++ .. ...+.+.+.+|.+++.|+..+
T Consensus 110 ~kPDvVi~~g~~~--~~~~~~~aa~~~~IPv~h~~ag~r------s~~~~~~~~~~---~~r~~~~~~a~~~~~~se~~~ 178 (396)
T 3dzc_A 110 EQPDVVLVHGDTA--TTFAASLAAYYQQIPVGHVEAGLR------TGNIYSPWPEE---GNRKLTAALTQYHFAPTDTSR 178 (396)
T ss_dssp HCCSEEEEETTSH--HHHHHHHHHHTTTCCEEEETCCCC------CSCTTSSTTHH---HHHHHHHHTCSEEEESSHHHH
T ss_pred cCCCEEEEECCch--hHHHHHHHHHHhCCCEEEEECCcc------ccccccCCcHH---HHHHHHHHhcCEEECCCHHHH
Confidence 7899999998533 223345677788999764333221 01111111 11 112234678999999999999
Q ss_pred HHHHHHhCCc---eEEEeCCCCCCCCCCChH--H----HHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccc
Q 011969 179 HELAQNWGIK---ATVLYDQPPEFFHPTSLE--E----KHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAG 249 (474)
Q Consensus 179 ~~l~~~~~~~---~~vi~n~~~~~f~~~~~~--~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (474)
+.+.+ .|.+ +.++.|...+.+...... . +.++++++|.
T Consensus 179 ~~l~~-~G~~~~ki~vvGn~~~d~~~~~~~~~~~~~~~~~~~r~~lg~-------------------------------- 225 (396)
T 3dzc_A 179 ANLLQ-ENYNAENIFVTGNTVIDALLAVREKIHTDMDLQATLESQFPM-------------------------------- 225 (396)
T ss_dssp HHHHH-TTCCGGGEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHTCTT--------------------------------
T ss_pred HHHHH-cCCCcCcEEEECCcHHHHHHHhhhhcccchhhHHHHHHHhCc--------------------------------
Confidence 88887 4764 666655321111110000 0 1334444440
Q ss_pred cccccCCCCCeEEEEEeecc-cCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEE-eCCC
Q 011969 250 IDVFLKPNRPALVVSSTSWT-PDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT-GKGP 327 (474)
Q Consensus 250 ~~~~~~~~~~~~i~~~G~l~-~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv-G~g~ 327 (474)
++++++++++++++.. ..++++.+++|+..+.++ +|++.+++. |.++
T Consensus 226 ----l~~~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~---------------------------~~~~~~v~~~g~~~ 274 (396)
T 3dzc_A 226 ----LDASKKLILVTGHRRESFGGGFERICQALITTAEQ---------------------------HPECQILYPVHLNP 274 (396)
T ss_dssp ----CCTTSEEEEEECSCBCCCTTHHHHHHHHHHHHHHH---------------------------CTTEEEEEECCBCH
T ss_pred ----cCCCCCEEEEEECCcccchhHHHHHHHHHHHHHHh---------------------------CCCceEEEEeCCCh
Confidence 1244555566665543 347799999999998774 688999885 5443
Q ss_pred ChHHHHHHHHH-cCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEe-ccccccccc
Q 011969 328 DKESYEEKIRR-LRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV-SYSCIEELV 404 (474)
Q Consensus 328 ~~~~~~~~~~~-l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~-~~~~~~e~v 404 (474)
.+++.+++ ++. ++|.+.+. ++..++..+|+.||++|. +| | + ...|||+||+|||++ +.++..|++
T Consensus 275 ---~~~~~l~~~~~~~~~v~~~~~-lg~~~~~~l~~~ad~vv~---~S-G---g-~~~EA~a~G~PvV~~~~~~~~~e~v 342 (396)
T 3dzc_A 275 ---NVREPVNKLLKGVSNIVLIEP-QQYLPFVYLMDRAHIILT---DS-G---G-IQEEAPSLGKPVLVMRETTERPEAV 342 (396)
T ss_dssp ---HHHHHHHHHTTTCTTEEEECC-CCHHHHHHHHHHCSEEEE---SC-S---G-GGTTGGGGTCCEEECCSSCSCHHHH
T ss_pred ---HHHHHHHHHHcCCCCEEEeCC-CCHHHHHHHHHhcCEEEE---CC-c---c-HHHHHHHcCCCEEEccCCCcchHHH
Confidence 24444444 343 68999988 888899999999999988 45 3 2 348999999999998 678888888
Q ss_pred ccCCcEEEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 405 KVDKNGLLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 405 ~~~~~G~l~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
+.+ .+++++ |++++++++..++++ ++.+++|++++..+.
T Consensus 343 ~~G-~~~lv~~d~~~l~~ai~~ll~d----~~~~~~m~~~~~~~~ 382 (396)
T 3dzc_A 343 AAG-TVKLVGTNQQQICDALSLLLTD----PQAYQAMSQAHNPYG 382 (396)
T ss_dssp HHT-SEEECTTCHHHHHHHHHHHHHC----HHHHHHHHTSCCTTC
T ss_pred HcC-ceEEcCCCHHHHHHHHHHHHcC----HHHHHHHhhccCCCc
Confidence 766 578886 799999999999984 888899988765543
No 33
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.78 E-value=6e-18 Score=175.67 Aligned_cols=265 Identities=16% Similarity=0.113 Sum_probs=172.3
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchH-HHHHHHHHHHHhhhcCEEEEeCHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHF-VSIYRWIEKYYGKMANGCLCVTQAMQ 178 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (474)
.+||+|+++..... .+.+.++++..++|++. .+.... +.....++ .. ...+.+.+.+|.+++.|+..+
T Consensus 113 ~kPD~Vi~~gd~~~--~l~~~laA~~~~IPv~h-~~aglr-----s~~~~~~~p~~---~~r~~~~~~a~~~~~~se~~~ 181 (403)
T 3ot5_A 113 ENPDIVLVHGDTTT--SFAAGLATFYQQKMLGH-VEAGLR-----TWNKYSPFPEE---MNRQLTGVMADIHFSPTKQAK 181 (403)
T ss_dssp HCCSEEEEETTCHH--HHHHHHHHHHTTCEEEE-ESCCCC-----CSCTTSSTTHH---HHHHHHHHHCSEEEESSHHHH
T ss_pred cCCCEEEEECCchh--HHHHHHHHHHhCCCEEE-EECCcc-----ccccccCCcHH---HHHHHHHHhcCEEECCCHHHH
Confidence 78999999985332 22345667788999653 432200 01111111 11 223345567999999999999
Q ss_pred HHHHHHhCCc---eEEEeCCCCC--CCCCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccc
Q 011969 179 HELAQNWGIK---ATVLYDQPPE--FFHPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVF 253 (474)
Q Consensus 179 ~~l~~~~~~~---~~vi~n~~~~--~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (474)
+.+.+. |.+ +.++.|...+ .+.+... .+.+.++ .
T Consensus 182 ~~l~~~-Gi~~~~i~vvGn~~~D~~~~~~~~~-~~~~~~~---------------------------------------~ 220 (403)
T 3ot5_A 182 ENLLAE-GKDPATIFVTGNTAIDALKTTVQKD-YHHPILE---------------------------------------N 220 (403)
T ss_dssp HHHHHT-TCCGGGEEECCCHHHHHHHHHSCTT-CCCHHHH---------------------------------------S
T ss_pred HHHHHc-CCCcccEEEeCCchHHHHHhhhhhh-cchHHHH---------------------------------------h
Confidence 988874 664 5555443111 0100000 0001110 0
Q ss_pred cCCCCCeEEEEEeeccc-CCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEE-eCCCChHH
Q 011969 254 LKPNRPALVVSSTSWTP-DEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT-GKGPDKES 331 (474)
Q Consensus 254 ~~~~~~~~i~~~G~l~~-~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv-G~g~~~~~ 331 (474)
+ ++++++++++|+... .++++.+++|+..+.++ +|++.+++. |.++ .
T Consensus 221 l-~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~---------------------------~~~~~~v~~~~~~~---~ 269 (403)
T 3ot5_A 221 L-GDNRLILMTAHRRENLGEPMQGMFEAVREIVES---------------------------REDTELVYPMHLNP---A 269 (403)
T ss_dssp C-TTCEEEEECCCCHHHHTTHHHHHHHHHHHHHHH---------------------------CTTEEEEEECCSCH---H
T ss_pred c-cCCCEEEEEeCcccccCcHHHHHHHHHHHHHHh---------------------------CCCceEEEecCCCH---H
Confidence 1 344556677776533 46789999999998774 688999887 4333 2
Q ss_pred HHHHHHH-cCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEe-cccccccccccCC
Q 011969 332 YEEKIRR-LRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV-SYSCIEELVKVDK 408 (474)
Q Consensus 332 ~~~~~~~-l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~-~~~~~~e~v~~~~ 408 (474)
+++.+++ ++. ++|.+.+. ++..++..+|+.||++|. +| |....||++||+|+|++ +.++..|.++.+
T Consensus 270 ~~~~l~~~~~~~~~v~l~~~-l~~~~~~~l~~~ad~vv~---~S-----Gg~~~EA~a~g~PvV~~~~~~~~~e~v~~g- 339 (403)
T 3ot5_A 270 VREKAMAILGGHERIHLIEP-LDAIDFHNFLRKSYLVFT---DS-----GGVQEEAPGMGVPVLVLRDTTERPEGIEAG- 339 (403)
T ss_dssp HHHHHHHHHTTCTTEEEECC-CCHHHHHHHHHHEEEEEE---CC-----HHHHHHGGGTTCCEEECCSSCSCHHHHHHT-
T ss_pred HHHHHHHHhCCCCCEEEeCC-CCHHHHHHHHHhcCEEEE---CC-----ccHHHHHHHhCCCEEEecCCCcchhheeCC-
Confidence 3444444 343 68999998 888899999999999987 44 23448999999999998 678888887555
Q ss_pred cEEEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Q 011969 409 NGLLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLI 465 (474)
Q Consensus 409 ~G~l~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 465 (474)
+|++++ |++++++++..++++ ++.+++|++++..+.... .++++++.+.
T Consensus 340 ~~~lv~~d~~~l~~ai~~ll~~----~~~~~~m~~~~~~~g~~~----aa~rI~~~l~ 389 (403)
T 3ot5_A 340 TLKLIGTNKENLIKEALDLLDN----KESHDKMAQAANPYGDGF----AANRILAAIK 389 (403)
T ss_dssp SEEECCSCHHHHHHHHHHHHHC----HHHHHHHHHSCCTTCCSC----HHHHHHHHHH
T ss_pred cEEEcCCCHHHHHHHHHHHHcC----HHHHHHHHhhcCcccCCc----HHHHHHHHHH
Confidence 899986 899999999999984 888899987665544333 4444444443
No 34
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.77 E-value=7.7e-17 Score=166.60 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=107.0
Q ss_pred CCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEE-EEEeCCCChHHHHH
Q 011969 256 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF-IITGKGPDKESYEE 334 (474)
Q Consensus 256 ~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ivG~g~~~~~~~~ 334 (474)
++++.++++.|++. .++.+.+.+++..+.+ .+++++ +++|++++.+.++
T Consensus 230 ~~~~~v~v~~Gs~~-~~~~~~~~~~~~~l~~----------------------------~~~~~~~~~~G~~~~~~~l~- 279 (430)
T 2iyf_A 230 GAEKVVLVSLGSAF-TKQPAFYRECVRAFGN----------------------------LPGWHLVLQIGRKVTPAELG- 279 (430)
T ss_dssp TCSEEEEEECTTTC-C-CHHHHHHHHHHHTT----------------------------CTTEEEEEECC---CGGGGC-
T ss_pred CCCCeEEEEcCCCC-CCcHHHHHHHHHHHhc----------------------------CCCeEEEEEeCCCCChHHhc-
Confidence 34566888999998 5565555555554422 246777 5789887655432
Q ss_pred HHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccc----cccccccCCcE
Q 011969 335 KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKVDKNG 410 (474)
Q Consensus 335 ~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~----~~e~v~~~~~G 410 (474)
.+ .++|.+.|. ++.. .+|..||++|. .+ | +++++|||++|+|+|+++..+ ..+.+.+.+.|
T Consensus 280 ---~~-~~~v~~~~~-~~~~---~~l~~ad~~v~---~~-G---~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~~g~g 344 (430)
T 2iyf_A 280 ---EL-PDNVEVHDW-VPQL---AILRQADLFVT---HA-G---AGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVA 344 (430)
T ss_dssp ---SC-CTTEEEESS-CCHH---HHHTTCSEEEE---CC-C---HHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTSE
T ss_pred ---cC-CCCeEEEec-CCHH---HHhhccCEEEE---CC-C---ccHHHHHHHhCCCEEECCCccchHHHHHHHHHcCCE
Confidence 12 168999986 6654 78999999887 22 2 368999999999999997644 45667778899
Q ss_pred EEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHH
Q 011969 411 LLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWAT 455 (474)
Q Consensus 411 ~l~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 455 (474)
+.++ ++++++++|.+++++ ++.++++++.+.++.....|+.
T Consensus 345 ~~~~~~~~~~~~l~~~i~~ll~~----~~~~~~~~~~~~~~~~~~~~~~ 389 (430)
T 2iyf_A 345 RKLATEEATADLLRETALALVDD----PEVARRLRRIQAEMAQEGGTRR 389 (430)
T ss_dssp EECCCC-CCHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHCHHHH
T ss_pred EEcCCCCCCHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHhcCcHHH
Confidence 9986 689999999999984 8888888888887664444443
No 35
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.72 E-value=1.1e-16 Score=164.00 Aligned_cols=150 Identities=12% Similarity=0.067 Sum_probs=100.9
Q ss_pred CCCCeEEEEEeecccCC----------CHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeC
Q 011969 256 PNRPALVVSSTSWTPDE----------DFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGK 325 (474)
Q Consensus 256 ~~~~~~i~~~G~l~~~k----------~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~ 325 (474)
++++.+++++|++...+ .+..+++++..+ +++++++|+
T Consensus 225 ~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~--------------------------------~~~~v~~~~ 272 (398)
T 4fzr_A 225 RKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL--------------------------------GFEVVVAVS 272 (398)
T ss_dssp CSSCEEECC----------------CCSHHHHHHHGGGG--------------------------------TCEEEECCC
T ss_pred CCCCEEEEEccCcccccccccccchHHHHHHHHHHHHhC--------------------------------CCEEEEEeC
Confidence 45667888999997554 344444444332 478888887
Q ss_pred CCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec----ccccc
Q 011969 326 GPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS----YSCIE 401 (474)
Q Consensus 326 g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~----~~~~~ 401 (474)
+++.+.+. .+ .++|.+.|. + ++..++..||++|. .+ -+.++.|||++|+|+|+.. ..+..
T Consensus 273 ~~~~~~l~----~~-~~~v~~~~~-~---~~~~ll~~ad~~v~---~g----G~~t~~Ea~~~G~P~v~~p~~~~q~~~a 336 (398)
T 4fzr_A 273 DKLAQTLQ----PL-PEGVLAAGQ-F---PLSAIMPACDVVVH---HG----GHGTTLTCLSEGVPQVSVPVIAEVWDSA 336 (398)
T ss_dssp C------------C-CTTEEEESC-C---CHHHHGGGCSEEEE---CC----CHHHHHHHHHTTCCEEECCCSGGGHHHH
T ss_pred Ccchhhhc----cC-CCcEEEeCc-C---CHHHHHhhCCEEEe---cC----CHHHHHHHHHhCCCEEecCCchhHHHHH
Confidence 76543332 22 269999987 5 47889999999997 22 2568999999999999954 44677
Q ss_pred cccccCCcEEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHH
Q 011969 402 ELVKVDKNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEW 457 (474)
Q Consensus 402 e~v~~~~~G~l~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 457 (474)
+.+.+.+.|++++ ++++|+++|.+++++ ++.++++++.+.++.....|+...
T Consensus 337 ~~~~~~g~g~~~~~~~~~~~~l~~ai~~ll~~----~~~~~~~~~~~~~~~~~~~~~~~~ 392 (398)
T 4fzr_A 337 RLLHAAGAGVEVPWEQAGVESVLAACARIRDD----SSYVGNARRLAAEMATLPTPADIV 392 (398)
T ss_dssp HHHHHTTSEEECC-------CHHHHHHHHHHC----THHHHHHHHHHHHHTTSCCHHHHH
T ss_pred HHHHHcCCEEecCcccCCHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHcCCCHHHHH
Confidence 7888889999986 688999999999995 888999999999887677766543
No 36
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.70 E-value=2e-15 Score=153.57 Aligned_cols=350 Identities=13% Similarity=0.063 Sum_probs=190.1
Q ss_pred CceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCC-----CCCCchhHHH
Q 011969 4 RGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIP-----RGLPKVLKPV 78 (474)
Q Consensus 4 ~~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~-----~~~~~~~~~~ 78 (474)
|++++++..+..|+..++...+..|.++ ||+|++++... ..+.....|+.++.++...... .........+
T Consensus 4 M~~il~~~~~~~Ghv~~~~~La~~L~~~-GheV~v~~~~~---~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (402)
T 3ia7_A 4 QRHILFANVQGHGHVYPSLGLVSELARR-GHRITYVTTPL---FADEVKAAGAEVVLYKSEFDTFHVPEVVKQEDAETQL 79 (402)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHT-TCEEEEEECHH---HHHHHHHTTCEEEECCCGGGTSSSSSSSCCTTHHHHH
T ss_pred CCEEEEEeCCCCcccccHHHHHHHHHhC-CCEEEEEcCHH---HHHHHHHcCCEEEecccccccccccccccccchHHHH
Confidence 4457777777677777888888999986 99999999532 1233445688888887321100 0011111111
Q ss_pred HH-HHHHHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhh-------ccCCCc
Q 011969 79 LL-LLKPLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSL-------SLGRRS 150 (474)
Q Consensus 79 ~~-~~~~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~-------~~~~~~ 150 (474)
.. +.........-+...+ +..+||+||++++.. ..+.++++..++|++...|++..+.... ......
T Consensus 80 ~~~~~~~~~~~~~~l~~~l-~~~~pD~Vi~d~~~~----~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (402)
T 3ia7_A 80 HLVYVRENVAILRAAEEAL-GDNPPDLVVYDVFPF----IAGRLLAARWDRPAVRLTGGFAANEHYSLFKELWKSNGQRH 154 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCCCSEEEEESTTH----HHHHHHHHHHTCCEEEEESSCCCBTTBCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHH-hccCCCEEEECchHH----HHHHHHHHhhCCCEEEEecccccCccccccccccccccccC
Confidence 11 1222212122222233 237999999985221 2345566778899999887764211000 000001
Q ss_pred h--HHHHHHHHHHHHhhh------------c-CEEEEeCHHHHHHHHHHhCCceEEEeCCCCCCCCCCChHHHHHHHHhh
Q 011969 151 H--FVSIYRWIEKYYGKM------------A-NGCLCVTQAMQHELAQNWGIKATVLYDQPPEFFHPTSLEEKHELFCRL 215 (474)
Q Consensus 151 ~--~~~~~~~~e~~~~~~------------a-d~vi~vS~~~~~~l~~~~~~~~~vi~n~~~~~f~~~~~~~~~~~~~~l 215 (474)
+ +..+..++.+...+. . |..++.+....+.....++.+ +.+.|+.. ... ..
T Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~vGp~~--~~~-----~~----- 220 (402)
T 3ia7_A 155 PADVEAVHSVLVDLLGKYGVDTPVKEYWDEIEGLTIVFLPKSFQPFAETFDER--FAFVGPTL--TGR-----DG----- 220 (402)
T ss_dssp GGGSHHHHHHHHHHHHTTTCCSCHHHHHTCCCSCEEESSCGGGSTTGGGCCTT--EEECCCCC--CC-------------
T ss_pred hhhHHHHHHHHHHHHHHcCCCCChhhhhcCCCCeEEEEcChHhCCccccCCCC--eEEeCCCC--CCc-----cc-----
Confidence 1 111222222222211 0 333333322221111111111 11111100 000 00
Q ss_pred hhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccC
Q 011969 216 NKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNED 295 (474)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~ 295 (474)
...+ ....++++.++++.|+....+ .+.+.+.+..+.+
T Consensus 221 -------------------------~~~~-------~~~~~~~~~v~v~~G~~~~~~-~~~~~~~~~~~~~--------- 258 (402)
T 3ia7_A 221 -------------------------QPGW-------QPPRPDAPVLLVSLGNQFNEH-PEFFRACAQAFAD--------- 258 (402)
T ss_dssp --------------------------CCC-------CCSSTTCCEEEEECCSCSSCC-HHHHHHHHHHHTT---------
T ss_pred -------------------------CCCC-------cccCCCCCEEEEECCCCCcch-HHHHHHHHHHHhc---------
Confidence 0000 001355677888999987654 2333333333322
Q ss_pred CCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCC
Q 011969 296 DSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSG 375 (474)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~ 375 (474)
.+...++++|++.+.+.+++ + .++|.+.|. ++.. .++..||++|. .+ |
T Consensus 259 -------------------~~~~~~~~~g~~~~~~~~~~----~-~~~v~~~~~-~~~~---~ll~~ad~~v~---~~-G 306 (402)
T 3ia7_A 259 -------------------TPWHVVMAIGGFLDPAVLGP----L-PPNVEAHQW-IPFH---SVLAHARACLT---HG-T 306 (402)
T ss_dssp -------------------SSCEEEEECCTTSCGGGGCS----C-CTTEEEESC-CCHH---HHHTTEEEEEE---CC-C
T ss_pred -------------------CCcEEEEEeCCcCChhhhCC----C-CCcEEEecC-CCHH---HHHhhCCEEEE---CC-C
Confidence 23233455776655443322 1 268999987 6554 89999999997 22 2
Q ss_pred CCCchHHHHHHhcCCcEEEecc-----cccccccccCCcEEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011969 376 LDLPMKVVDMFGCGLPVCAVSY-----SCIEELVKVDKNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLE 446 (474)
Q Consensus 376 e~~p~kv~Eama~G~PVia~~~-----~~~~e~v~~~~~G~l~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 446 (474)
..++.|||++|+|+|+... ....+.+.+.+.|..+. +++++++++.+++++ ++.++++++.+.+
T Consensus 307 ---~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~----~~~~~~~~~~~~~ 379 (402)
T 3ia7_A 307 ---TGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAAD----SAVRERVRRMQRD 379 (402)
T ss_dssp ---HHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHC----HHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcC----HHHHHHHHHHHHH
Confidence 2588999999999996544 46667778889999885 689999999999995 8888888888888
Q ss_pred hccccchHHHH
Q 011969 447 MGLSARWATEW 457 (474)
Q Consensus 447 ~~~~~~w~~~~ 457 (474)
+.....++...
T Consensus 380 ~~~~~~~~~~~ 390 (402)
T 3ia7_A 380 ILSSGGPARAA 390 (402)
T ss_dssp HHTSCHHHHHH
T ss_pred HhhCChHHHHH
Confidence 76555554433
No 37
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.68 E-value=4e-16 Score=159.00 Aligned_cols=153 Identities=10% Similarity=0.072 Sum_probs=114.3
Q ss_pred CCCCeEEEEEeecccCCCH-HHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHH
Q 011969 256 PNRPALVVSSTSWTPDEDF-GILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEE 334 (474)
Q Consensus 256 ~~~~~~i~~~G~l~~~k~~-~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~ 334 (474)
++++.++++.|+....++. ..+++++... . ..|+++++++|++++.+.+.
T Consensus 216 ~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~---------------------------~~p~~~~v~~~~~~~~~~l~- 266 (391)
T 3tsa_A 216 TSARRVCICMGRMVLNATGPAPLLRAVAAA-T---------------------------ELPGVEAVIAVPPEHRALLT- 266 (391)
T ss_dssp CSSEEEEEECCHHHHHHHCSHHHHHHHHHH-H---------------------------TSTTEEEEEECCGGGGGGCT-
T ss_pred CCCCEEEEEcCCCCCcccchHHHHHHHHHh-c---------------------------cCCCeEEEEEECCcchhhcc-
Confidence 4566688888998765444 6666766655 5 25789999999876543332
Q ss_pred HHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec----ccccccccccCCc
Q 011969 335 KIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS----YSCIEELVKVDKN 409 (474)
Q Consensus 335 ~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~----~~~~~e~v~~~~~ 409 (474)
++ ++|.+.|. ++..+ ++..||++|. .+ -++++.|||++|+|+|+.. .....+.+.+.+.
T Consensus 267 -----~~~~~v~~~~~-~~~~~---ll~~ad~~v~---~~----G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~~~~g~ 330 (391)
T 3tsa_A 267 -----DLPDNARIAES-VPLNL---FLRTCELVIC---AG----GSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGA 330 (391)
T ss_dssp -----TCCTTEEECCS-CCGGG---TGGGCSEEEE---CC----CHHHHHHHHHTTCCEEECCCSTTHHHHHHHHHHTTS
T ss_pred -----cCCCCEEEecc-CCHHH---HHhhCCEEEe---CC----CHHHHHHHHHhCCCEEecCCcccHHHHHHHHHHcCC
Confidence 23 68999987 66544 5699999997 22 2358999999999999954 3456677888889
Q ss_pred EEEeCC------HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHH
Q 011969 410 GLLFSS------SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEW 457 (474)
Q Consensus 410 G~l~~~------~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 457 (474)
|.+++. ++++++++.+++++ ++.++++++.+.++.....|+...
T Consensus 331 g~~~~~~~~~~~~~~l~~ai~~ll~~----~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 3tsa_A 331 GICLPDEQAQSDHEQFTDSIATVLGD----TGFAAAAIKLSDEITAMPHPAALV 380 (391)
T ss_dssp EEECCSHHHHTCHHHHHHHHHHHHTC----THHHHHHHHHHHHHHTSCCHHHHH
T ss_pred EEecCcccccCCHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHcCCCHHHHH
Confidence 999854 89999999999985 788899999888877667775543
No 38
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.66 E-value=1.3e-15 Score=156.01 Aligned_cols=152 Identities=18% Similarity=0.093 Sum_probs=109.7
Q ss_pred CCCCeEEEEEeecccC-CCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHH
Q 011969 256 PNRPALVVSSTSWTPD-EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEE 334 (474)
Q Consensus 256 ~~~~~~i~~~G~l~~~-k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~ 334 (474)
++++.+++++|++... ++.+.+.+++..+.+ .+++++++|++++.+.++
T Consensus 230 ~~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~-----------------------------~~~~~v~~~g~~~~~~l~- 279 (398)
T 3oti_A 230 PARPEVAITMGTIELQAFGIGAVEPIIAAAGE-----------------------------VDADFVLALGDLDISPLG- 279 (398)
T ss_dssp CSSCEEEECCTTTHHHHHCGGGHHHHHHHHHT-----------------------------SSSEEEEECTTSCCGGGC-
T ss_pred CCCCEEEEEcCCCccccCcHHHHHHHHHHHHc-----------------------------CCCEEEEEECCcChhhhc-
Confidence 4567788899999655 355666666665543 257888888876644332
Q ss_pred HHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEe----cccccc--cccccC
Q 011969 335 KIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAV----SYSCIE--ELVKVD 407 (474)
Q Consensus 335 ~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~----~~~~~~--e~v~~~ 407 (474)
++ ++|.+.|. + ++..++..||++|. .+ -+.++.|||++|+|+|+. +..... +.+.+.
T Consensus 280 -----~~~~~v~~~~~-~---~~~~ll~~ad~~v~---~~----G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~~~~~~~ 343 (398)
T 3oti_A 280 -----TLPRNVRAVGW-T---PLHTLLRTCTAVVH---HG----GGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRR 343 (398)
T ss_dssp -----SCCTTEEEESS-C---CHHHHHTTCSEEEE---CC----CHHHHHHHHHHTCCEEECCCTTCCSSCTTHHHHHHH
T ss_pred -----cCCCcEEEEcc-C---CHHHHHhhCCEEEE---CC----CHHHHHHHHHhCCCEEEcCCCchhHHHHHHHHHHHC
Confidence 23 69999987 4 57788999999997 22 245899999999999994 456777 888888
Q ss_pred CcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHH
Q 011969 408 KNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEW 457 (474)
Q Consensus 408 ~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 457 (474)
+.|+.++..+.-.+.+.++++ |++.++++++.+.++.....|+...
T Consensus 344 g~g~~~~~~~~~~~~l~~ll~----~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (398)
T 3oti_A 344 GIGLVSTSDKVDADLLRRLIG----DESLRTAAREVREEMVALPTPAETV 389 (398)
T ss_dssp TSEEECCGGGCCHHHHHHHHH----CHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CCEEeeCCCCCCHHHHHHHHc----CHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 999998632222333337777 4888999999999887677776544
No 39
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.65 E-value=3.8e-14 Score=145.53 Aligned_cols=149 Identities=16% Similarity=0.171 Sum_probs=104.0
Q ss_pred CCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEE-EeCCCChHHHHH
Q 011969 256 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFII-TGKGPDKESYEE 334 (474)
Q Consensus 256 ~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i-vG~g~~~~~~~~ 334 (474)
++++.++++.|+..... .+.+...+..+.+ .+ +++++ +|.+++.+.++
T Consensus 245 ~~~~~v~v~~Gs~~~~~-~~~~~~~~~al~~----------------------------~~-~~~v~~~g~~~~~~~l~- 293 (415)
T 3rsc_A 245 DDLPVVLVSLGTTFNDR-PGFFRDCARAFDG----------------------------QP-WHVVMTLGGQVDPAALG- 293 (415)
T ss_dssp SCCCEEEEECTTTSCCC-HHHHHHHHHHHTT----------------------------SS-CEEEEECTTTSCGGGGC-
T ss_pred CCCCEEEEECCCCCCCh-HHHHHHHHHHHhc----------------------------CC-cEEEEEeCCCCChHHhc-
Confidence 45677888889986543 2333333333322 23 66655 77665554332
Q ss_pred HHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec----ccccccccccCCc
Q 011969 335 KIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS----YSCIEELVKVDKN 409 (474)
Q Consensus 335 ~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~----~~~~~e~v~~~~~ 409 (474)
.+ ++|.+.+. ++.. .++..||++|. . .| ..++.|||++|+|+|+.. .....+.+.+.+.
T Consensus 294 -----~~~~~v~~~~~-~~~~---~ll~~ad~~v~---~-~G---~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~~~g~ 357 (415)
T 3rsc_A 294 -----DLPPNVEAHRW-VPHV---KVLEQATVCVT---H-GG---MGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGL 357 (415)
T ss_dssp -----CCCTTEEEESC-CCHH---HHHHHEEEEEE---S-CC---HHHHHHHHHTTCCEEECCCSGGGHHHHHHHHHHTC
T ss_pred -----CCCCcEEEEec-CCHH---HHHhhCCEEEE---C-Cc---HHHHHHHHHhCCCEEEeCCcchHHHHHHHHHHcCC
Confidence 23 68999987 6544 88999999997 2 22 258899999999999954 4456677777888
Q ss_pred EEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHH
Q 011969 410 GLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWAT 455 (474)
Q Consensus 410 G~l~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 455 (474)
|..+. +++++++++.+++++ ++.++++++.+.++.....++.
T Consensus 358 g~~~~~~~~~~~~l~~~i~~ll~~----~~~~~~~~~~~~~~~~~~~~~~ 403 (415)
T 3rsc_A 358 GAVLPGEKADGDTLLAAVGAVAAD----PALLARVEAMRGHVRRAGGAAR 403 (415)
T ss_dssp EEECCGGGCCHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHSCHHHH
T ss_pred EEEcccCCCCHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHhcCHHHH
Confidence 98885 689999999999984 8888888888887665555544
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.55 E-value=3.8e-13 Score=136.77 Aligned_cols=157 Identities=15% Similarity=0.106 Sum_probs=108.6
Q ss_pred CCCCeEEEEEeecccC-------CCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC
Q 011969 256 PNRPALVVSSTSWTPD-------EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD 328 (474)
Q Consensus 256 ~~~~~~i~~~G~l~~~-------k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~ 328 (474)
++++.++++.|++... +.+..+++++.. .++++++++++++
T Consensus 208 ~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~--------------------------------~~~~~~~~~g~~~ 255 (384)
T 2p6p_A 208 DTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVR--------------------------------WDVELIVAAPDTV 255 (384)
T ss_dssp CSSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHT--------------------------------TTCEEEEECCHHH
T ss_pred CCCCEEEEECCCCCccccccccHHHHHHHHHHHhc--------------------------------CCcEEEEEeCCCC
Confidence 3456688999999875 556666666653 2467777654432
Q ss_pred hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc----cccccc
Q 011969 329 KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELV 404 (474)
Q Consensus 329 ~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~----~~~e~v 404 (474)
.+++ +.+ -++|.+ |. +| ...+|..||++|. .+ | ++++.|||++|+|+|+.+.. ...+.+
T Consensus 256 ~~~l----~~~-~~~v~~-~~-~~---~~~~l~~~d~~v~---~~-G---~~t~~Ea~~~G~P~v~~p~~~dq~~~a~~~ 318 (384)
T 2p6p_A 256 AEAL----RAE-VPQARV-GW-TP---LDVVAPTCDLLVH---HA-G---GVSTLTGLSAGVPQLLIPKGSVLEAPARRV 318 (384)
T ss_dssp HHHH----HHH-CTTSEE-EC-CC---HHHHGGGCSEEEE---CS-C---TTHHHHHHHTTCCEEECCCSHHHHHHHHHH
T ss_pred HHhh----CCC-CCceEE-cC-CC---HHHHHhhCCEEEe---CC-c---HHHHHHHHHhCCCEEEccCcccchHHHHHH
Confidence 2222 222 258888 65 65 4668899999998 22 2 35899999999999999753 366667
Q ss_pred ccCCcEEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Q 011969 405 KVDKNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLIT 466 (474)
Q Consensus 405 ~~~~~G~l~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 466 (474)
.+.+.|+.++ +.++++++|.+++++ ++.++++++.+.++.....-+.. -+.+..++.
T Consensus 319 ~~~g~g~~~~~~~~~~~~l~~~i~~ll~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~ 379 (384)
T 2p6p_A 319 ADYGAAIALLPGEDSTEAIADSCQELQAK----DTYARRAQDLSREISGMPLPATV-VTALEQLAH 379 (384)
T ss_dssp HHHTSEEECCTTCCCHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHTSCCHHHH-HHHHHHHHH
T ss_pred HHCCCeEecCcCCCCHHHHHHHHHHHHcC----HHHHHHHHHHHHHHHhCCCHHHH-HHHHHHHhh
Confidence 7778899885 689999999999984 88888888888876644333322 233444443
No 41
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.47 E-value=5.2e-13 Score=137.85 Aligned_cols=247 Identities=16% Similarity=0.153 Sum_probs=156.0
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (474)
.+||+|+++..... ++ . .++++..++|++....+.. ......... ...+.+.+.+|.+++.|+..++
T Consensus 93 ~kPD~Vlv~gd~~~-~~-a-alaA~~~~IPv~h~eaglr-------s~~~~~pee---~nR~~~~~~a~~~~~~te~~~~ 159 (385)
T 4hwg_A 93 EKPDAVLFYGDTNS-CL-S-AIAAKRRKIPIFHMEAGNR-------CFDQRVPEE---INRKIIDHISDVNITLTEHARR 159 (385)
T ss_dssp HCCSEEEEESCSGG-GG-G-HHHHHHTTCCEEEESCCCC-------CSCTTSTHH---HHHHHHHHHCSEEEESSHHHHH
T ss_pred cCCcEEEEECCchH-HH-H-HHHHHHhCCCEEEEeCCCc-------cccccCcHH---HHHHHHHhhhceeecCCHHHHH
Confidence 78999999985432 22 2 4566778899654333331 111111011 2223445689999999999998
Q ss_pred HHHHHhCCc---eEEEeCCCCCCCCCC-ChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccC
Q 011969 180 ELAQNWGIK---ATVLYDQPPEFFHPT-SLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLK 255 (474)
Q Consensus 180 ~l~~~~~~~---~~vi~n~~~~~f~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (474)
.+.+. |.+ +.++-|...+.+... +...+.++++++| ++
T Consensus 160 ~l~~~-G~~~~~I~vtGnp~~D~~~~~~~~~~~~~~~~~lg-------------------------------------l~ 201 (385)
T 4hwg_A 160 YLIAE-GLPAELTFKSGSHMPEVLDRFMPKILKSDILDKLS-------------------------------------LT 201 (385)
T ss_dssp HHHHT-TCCGGGEEECCCSHHHHHHHHHHHHHHCCHHHHTT-------------------------------------CC
T ss_pred HHHHc-CCCcCcEEEECCchHHHHHHhhhhcchhHHHHHcC-------------------------------------CC
Confidence 88774 664 444444211111000 0011223444444 22
Q ss_pred CCCCeEEEEEeecc---cCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHH
Q 011969 256 PNRPALVVSSTSWT---PDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 332 (474)
Q Consensus 256 ~~~~~~i~~~G~l~---~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~ 332 (474)
+ ++++++..|+.. ..+++..+++|+..+.++ + ++.+++... | .+
T Consensus 202 ~-~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~---------------------------~-~~~vv~p~~-p---~~ 248 (385)
T 4hwg_A 202 P-KQYFLISSHREENVDVKNNLKELLNSLQMLIKE---------------------------Y-NFLIIFSTH-P---RT 248 (385)
T ss_dssp T-TSEEEEEECCC-----CHHHHHHHHHHHHHHHH---------------------------H-CCEEEEEEC-H---HH
T ss_pred c-CCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhc---------------------------C-CeEEEEECC-h---HH
Confidence 3 455667777643 346788999999988663 3 566666543 2 35
Q ss_pred HHHHHHc-C-C---CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc-ccccccccc
Q 011969 333 EEKIRRL-R-L---KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY-SCIEELVKV 406 (474)
Q Consensus 333 ~~~~~~l-~-l---~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~-~~~~e~v~~ 406 (474)
++.++++ + + ++|.+.+. ++..++..+++.||+++. +| | ....||+++|+|+|+... ++..|.++.
T Consensus 249 ~~~l~~~~~~~~~~~~v~l~~~-lg~~~~~~l~~~adlvvt---~S-G----gv~~EA~alG~Pvv~~~~~ter~e~v~~ 319 (385)
T 4hwg_A 249 KKRLEDLEGFKELGDKIRFLPA-FSFTDYVKLQMNAFCILS---DS-G----TITEEASILNLPALNIREAHERPEGMDA 319 (385)
T ss_dssp HHHHHTSGGGGGTGGGEEECCC-CCHHHHHHHHHHCSEEEE---CC-T----THHHHHHHTTCCEEECSSSCSCTHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEcC-CCHHHHHHHHHhCcEEEE---CC-c----cHHHHHHHcCCCEEEcCCCccchhhhhc
Confidence 6666665 4 2 58999887 888899999999999996 45 2 257999999999999864 335677755
Q ss_pred CCcEEEeC-CHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 011969 407 DKNGLLFS-SSSELADQLLMLFKGFPDDSDVLKKLRNGT 444 (474)
Q Consensus 407 ~~~G~l~~-~~~~la~~i~~l~~~~~~~~~~~~~~~~~~ 444 (474)
+ ++++++ |.+++++++..++++ +..+++|++++
T Consensus 320 G-~~~lv~~d~~~i~~ai~~ll~d----~~~~~~m~~~~ 353 (385)
T 4hwg_A 320 G-TLIMSGFKAERVLQAVKTITEE----HDNNKRTQGLV 353 (385)
T ss_dssp T-CCEECCSSHHHHHHHHHHHHTT----CBTTBCCSCCC
T ss_pred C-ceEEcCCCHHHHHHHHHHHHhC----hHHHHHhhccC
Confidence 5 778886 899999999999985 44444444333
No 42
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.46 E-value=1.3e-11 Score=127.21 Aligned_cols=142 Identities=15% Similarity=0.150 Sum_probs=99.9
Q ss_pred CCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEE-EEEeCCCChHHHHH
Q 011969 256 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF-IITGKGPDKESYEE 334 (474)
Q Consensus 256 ~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ivG~g~~~~~~~~ 334 (474)
++++.++++.|+.. ....+.+.+++..+.+ .++++ +++|.+.+.+.+.
T Consensus 253 ~~~~~v~v~~Gs~~-~~~~~~~~~~~~al~~-----------------------------~~~~~~~~~g~~~~~~~~~- 301 (424)
T 2iya_A 253 DGRPVLLIALGSAF-TDHLDFYRTCLSAVDG-----------------------------LDWHVVLSVGRFVDPADLG- 301 (424)
T ss_dssp SSCCEEEEECCSSS-CCCHHHHHHHHHHHTT-----------------------------CSSEEEEECCTTSCGGGGC-
T ss_pred CCCCEEEEEcCCCC-cchHHHHHHHHHHHhc-----------------------------CCcEEEEEECCcCChHHhc-
Confidence 45667888899987 3444444444444322 34566 5678776544321
Q ss_pred HHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc----ccccccccCCc
Q 011969 335 KIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELVKVDKN 409 (474)
Q Consensus 335 ~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~----~~~e~v~~~~~ 409 (474)
.+ ++|.+.+. +|+. .+|..||++|. . .| .++++||+++|+|+|+.... ...+.+.+.+.
T Consensus 302 -----~~~~~v~~~~~-~~~~---~~l~~~d~~v~---~-~G---~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~ 365 (424)
T 2iya_A 302 -----EVPPNVEVHQW-VPQL---DILTKASAFIT---H-AG---MGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGL 365 (424)
T ss_dssp -----SCCTTEEEESS-CCHH---HHHTTCSEEEE---C-CC---HHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHTTS
T ss_pred -----cCCCCeEEecC-CCHH---HHHhhCCEEEE---C-Cc---hhHHHHHHHcCCCEEEecCccchHHHHHHHHHCCC
Confidence 23 68999976 7654 68999999886 2 22 36999999999999999753 34556667788
Q ss_pred EEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 410 GLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 410 G~l~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
|+.++ +.++++++|.+++++ ++.++++++.+.+..
T Consensus 366 g~~~~~~~~~~~~l~~~i~~ll~~----~~~~~~~~~~~~~~~ 404 (424)
T 2iya_A 366 GRHIPRDQVTAEKLREAVLAVASD----PGVAERLAAVRQEIR 404 (424)
T ss_dssp EEECCGGGCCHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred EEEcCcCCCCHHHHHHHHHHHHcC----HHHHHHHHHHHHHHH
Confidence 99886 789999999999985 777777777776654
No 43
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.34 E-value=9.2e-11 Score=121.93 Aligned_cols=149 Identities=13% Similarity=0.031 Sum_probs=106.7
Q ss_pred CCCCeEEEEEeecccC-----CCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChH
Q 011969 256 PNRPALVVSSTSWTPD-----EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKE 330 (474)
Q Consensus 256 ~~~~~~i~~~G~l~~~-----k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~ 330 (474)
++++.++++.|+.... +.+..+++++..+ ++++++++++++.+
T Consensus 265 ~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~--------------------------------~~~~v~~~g~~~~~ 312 (441)
T 2yjn_A 265 PERRRVCLTLGISSRENSIGQVSIEELLGAVGDV--------------------------------DAEIIATFDAQQLE 312 (441)
T ss_dssp CSSCEEEEEC----------CCSTTTTHHHHHTS--------------------------------SSEEEECCCTTTTS
T ss_pred CCCCEEEEECCCCcccccChHHHHHHHHHHHHcC--------------------------------CCEEEEEECCcchh
Confidence 4567788999998754 7788888887542 46777777665433
Q ss_pred HHHHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----cccccccc
Q 011969 331 SYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVK 405 (474)
Q Consensus 331 ~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~v~ 405 (474)
.++ ++ ++|.+.+. +|. ..+|..||++|+ . . -++++.|||++|+|+|+... ....+.+.
T Consensus 313 ~l~------~~~~~v~~~~~-~~~---~~ll~~ad~~V~---~-~---G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~ 375 (441)
T 2yjn_A 313 GVA------NIPDNVRTVGF-VPM---HALLPTCAATVH---H-G---GPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQ 375 (441)
T ss_dssp SCS------SCCSSEEECCS-CCH---HHHGGGCSEEEE---C-C---CHHHHHHHHHTTCCEEECCCSHHHHHHHHHHH
T ss_pred hhc------cCCCCEEEecC-CCH---HHHHhhCCEEEE---C-C---CHHHHHHHHHhCCCEEEeCCcccHHHHHHHHH
Confidence 221 23 68999986 765 457899999997 2 2 24689999999999999976 33566677
Q ss_pred cCCcEEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHHHH
Q 011969 406 VDKNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWATEW 457 (474)
Q Consensus 406 ~~~~G~l~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 457 (474)
+.+.|+.++ ++++++++|.+++++ ++.++++++.+.++.....++...
T Consensus 376 ~~g~g~~~~~~~~~~~~l~~~i~~ll~~----~~~~~~~~~~~~~~~~~~~~~~~~ 427 (441)
T 2yjn_A 376 EFGAGIALPVPELTPDQLRESVKRVLDD----PAHRAGAARMRDDMLAEPSPAEVV 427 (441)
T ss_dssp HHTSEEECCTTTCCHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HcCCEEEcccccCCHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHcCCCHHHHH
Confidence 788999885 689999999999984 888888888888776555555443
No 44
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.25 E-value=1.6e-09 Score=111.50 Aligned_cols=139 Identities=14% Similarity=0.105 Sum_probs=95.3
Q ss_pred CCCCeEEEEEeecc-cCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHH
Q 011969 256 PNRPALVVSSTSWT-PDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEE 334 (474)
Q Consensus 256 ~~~~~~i~~~G~l~-~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~ 334 (474)
++++.++++.|+.. ..+.+..+++++..+ ++++++.++....+
T Consensus 219 ~~~~~Vlv~~Gs~~~~~~~~~~~~~al~~~--------------------------------~~~vv~~~g~~~~~---- 262 (404)
T 3h4t_A 219 AGSPPVYVGFGSGPAPAEAARVAIEAVRAQ--------------------------------GRRVVLSSGWAGLG---- 262 (404)
T ss_dssp TSSCCEEECCTTSCCCTTHHHHHHHHHHHT--------------------------------TCCEEEECTTTTCC----
T ss_pred cCCCeEEEECCCCCCcHHHHHHHHHHHHhC--------------------------------CCEEEEEeCCcccc----
Confidence 44566888889987 555566666666542 34566654433221
Q ss_pred HHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc----ccccccccCCc
Q 011969 335 KIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELVKVDKN 409 (474)
Q Consensus 335 ~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~----~~~e~v~~~~~ 409 (474)
..+. ++|.+.+. +|. ..++..||++|. .+ | ..++.||+++|+|+|+.... ...+.+...+.
T Consensus 263 ---~~~~~~~v~~~~~-~~~---~~ll~~~d~~v~---~g-G---~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~~~~G~ 328 (404)
T 3h4t_A 263 ---RIDEGDDCLVVGE-VNH---QVLFGRVAAVVH---HG-G---AGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGV 328 (404)
T ss_dssp ---CSSCCTTEEEESS-CCH---HHHGGGSSEEEE---CC-C---HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTS
T ss_pred ---cccCCCCEEEecC-CCH---HHHHhhCcEEEE---CC-c---HHHHHHHHHcCCCEEEcCCcccHHHHHHHHHHCCC
Confidence 1223 68999976 654 567889999997 22 2 24899999999999998643 23344666778
Q ss_pred EEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcc
Q 011969 410 GLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGL 449 (474)
Q Consensus 410 G~l~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~ 449 (474)
|...+ +.+++++++..+++ ++.++++++.+.++..
T Consensus 329 g~~l~~~~~~~~~l~~ai~~ll~-----~~~~~~~~~~~~~~~~ 367 (404)
T 3h4t_A 329 GVAHDGPTPTVESLSAALATALT-----PGIRARAAAVAGTIRT 367 (404)
T ss_dssp EEECSSSSCCHHHHHHHHHHHTS-----HHHHHHHHHHHTTCCC
T ss_pred EeccCcCCCCHHHHHHHHHHHhC-----HHHHHHHHHHHHHHhh
Confidence 88874 68999999999986 4566777777766554
No 45
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.24 E-value=1.7e-09 Score=117.02 Aligned_cols=173 Identities=13% Similarity=0.064 Sum_probs=128.2
Q ss_pred eEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEE--EEeCCC-ChHHHHHHH
Q 011969 260 ALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFI--ITGKGP-DKESYEEKI 336 (474)
Q Consensus 260 ~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--ivG~g~-~~~~~~~~~ 336 (474)
++++..++ ..|..+.++++...+.++ .|+..++ ++|.++ ....+.+.+
T Consensus 442 v~Fg~fn~--~~Ki~p~~l~~WarIL~~---------------------------vP~s~L~l~~~g~~~g~~~~~~~~~ 492 (631)
T 3q3e_A 442 VNIGIAST--TMKLNPYFLEALKAIRDR---------------------------AKVKVHFHFALGQSNGITHPYVERF 492 (631)
T ss_dssp EEEEEEEC--STTCCHHHHHHHHHHHHH---------------------------CSSEEEEEEEESSCCGGGHHHHHHH
T ss_pred EEEEECCc--cccCCHHHHHHHHHHHHh---------------------------CCCcEEEEEecCCCchhhHHHHHHH
Confidence 34555554 568889999999988875 6776664 367432 233344456
Q ss_pred HHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccc------cCCc
Q 011969 337 RRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVK------VDKN 409 (474)
Q Consensus 337 ~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~------~~~~ 409 (474)
.+.|+ ++|.|.|. ++.+++...|+.+|+++-| +.. +.|++.+|||+||+|||+.....+..-+. -|-.
T Consensus 493 ~~~GI~~Rv~F~g~-~p~~e~la~y~~aDIfLDp---fpy-~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLp 567 (631)
T 3q3e_A 493 IKSYLGDSATAHPH-SPYHQYLRILHNCDMMVNP---FPF-GNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLP 567 (631)
T ss_dssp HHHHHGGGEEEECC-CCHHHHHHHHHTCSEEECC---SSS-CCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCC
T ss_pred HHcCCCccEEEcCC-CCHHHHHHHHhcCcEEEeC---Ccc-cCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCC
Confidence 67788 69999998 9999999999999999983 432 34899999999999999987655554332 2445
Q ss_pred E-EEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccc----cchHHHHHHHHHHHHHHHhh
Q 011969 410 G-LLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLS----ARWATEWEEHAKPLITEVIS 470 (474)
Q Consensus 410 G-~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~w~~~~~~~~~~~~~~~~~ 470 (474)
+ ++..|.+++.+....+.++ ++.++++|++.++.... ..|...+++.++.++++..+
T Consensus 568 E~LIA~d~eeYv~~Av~La~D----~~~l~~LR~~Lr~~~~~spLFd~~~~~~e~~ye~~~~~w~~ 629 (631)
T 3q3e_A 568 EWLIANTVDEYVERAVRLAEN----HQERLELRRYIIENNGLNTLFTGDPRPMGQVFLEKLNAFLK 629 (631)
T ss_dssp GGGEESSHHHHHHHHHHHHHC----HHHHHHHHHHHHHSCCHHHHTCSCCTHHHHHHHHHHHHHHH
T ss_pred cceecCCHHHHHHHHHHHhCC----HHHHHHHHHHHHHHhhhCCCcchhHHHHHHHHHHHHHHHHh
Confidence 5 3778999999999999995 99999999999875411 14567778888777776544
No 46
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.23 E-value=1.8e-09 Score=111.16 Aligned_cols=136 Identities=11% Similarity=0.038 Sum_probs=94.0
Q ss_pred CCCeEEEEEeecc-cCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEE-eCCCChHHHHH
Q 011969 257 NRPALVVSSTSWT-PDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIIT-GKGPDKESYEE 334 (474)
Q Consensus 257 ~~~~~i~~~G~l~-~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iv-G~g~~~~~~~~ 334 (474)
+++.++++.|+.. ..+..+.+++++..+ + .+++++ |.+....
T Consensus 237 ~~~~v~v~~Gs~~~~~~~~~~~~~al~~~-------------------------------~-~~~v~~~g~~~~~~---- 280 (415)
T 1iir_A 237 GPPPVYLGFGSLGAPADAVRVAIDAIRAH-------------------------------G-RRVILSRGWADLVL---- 280 (415)
T ss_dssp SSCCEEEECC---CCHHHHHHHHHHHHHT-------------------------------T-CCEEECTTCTTCCC----
T ss_pred CCCeEEEeCCCCCCcHHHHHHHHHHHHHC-------------------------------C-CeEEEEeCCCcccc----
Confidence 3456888999985 666666666766543 2 344444 7654320
Q ss_pred HHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccc----cccccccCCc
Q 011969 335 KIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKVDKN 409 (474)
Q Consensus 335 ~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~----~~e~v~~~~~ 409 (474)
..+ ++|.+.+. +|.. .++..||++|. . .| .+++.||+++|+|+|+....+ ..+.+.+.+.
T Consensus 281 ----~~~~~~v~~~~~-~~~~---~~l~~~d~~v~---~-~G---~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~ 345 (415)
T 1iir_A 281 ----PDDGADCFAIGE-VNHQ---VLFGRVAAVIH---H-GG---AGTTHVAARAGAPQILLPQMADQPYYAGRVAELGV 345 (415)
T ss_dssp ----SSCGGGEEECSS-CCHH---HHGGGSSEEEE---C-CC---HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHHTS
T ss_pred ----cCCCCCEEEeCc-CChH---HHHhhCCEEEe---C-CC---hhHHHHHHHcCCCEEECCCCCccHHHHHHHHHCCC
Confidence 123 58999876 8764 45799999997 2 22 369999999999999986533 4566777788
Q ss_pred EEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 410 GLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 410 G~l~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
|+.++ +.++++++|.++ + |++.++++++.+.++.
T Consensus 346 g~~~~~~~~~~~~l~~~i~~l-~----~~~~~~~~~~~~~~~~ 383 (415)
T 1iir_A 346 GVAHDGPIPTFDSLSAALATA-L----TPETHARATAVAGTIR 383 (415)
T ss_dssp EEECSSSSCCHHHHHHHHHHH-T----SHHHHHHHHHHHHHSC
T ss_pred cccCCcCCCCHHHHHHHHHHH-c----CHHHHHHHHHHHHHHh
Confidence 98875 689999999999 7 4777777777777654
No 47
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.11 E-value=3.4e-10 Score=115.01 Aligned_cols=144 Identities=17% Similarity=0.128 Sum_probs=94.3
Q ss_pred CCCCCeEEEEEeecccCCC-HHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHH
Q 011969 255 KPNRPALVVSSTSWTPDED-FGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 333 (474)
Q Consensus 255 ~~~~~~~i~~~G~l~~~k~-~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~ 333 (474)
.++++.++++.|+....++ ...+.+++..+.+ .+..+++.+.+.+.+.
T Consensus 234 ~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~-----------------------------~~~~~v~~~~~~~~~~-- 282 (400)
T 4amg_A 234 AAGRRRIAVTLGSIDALSGGIAKLAPLFSEVAD-----------------------------VDAEFVLTLGGGDLAL-- 282 (400)
T ss_dssp CTTCCEEEECCCSCC--CCSSSTTHHHHHHGGG-----------------------------SSSEEEEECCTTCCCC--
T ss_pred cCCCcEEEEeCCcccccCccHHHHHHHHHHhhc-----------------------------cCceEEEEecCccccc--
Confidence 3566767888888765443 3444445555433 3455666554433221
Q ss_pred HHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----cccccccccCC
Q 011969 334 EKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVKVDK 408 (474)
Q Consensus 334 ~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~v~~~~ 408 (474)
...+ +++.+.+. +| ...+|..+|++|. ..| .+++.||+++|+|+|+... ....+.+.+.+
T Consensus 283 ----~~~~~~~v~~~~~-~p---~~~lL~~~~~~v~----h~G---~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v~~~G 347 (400)
T 4amg_A 283 ----LGELPANVRVVEW-IP---LGALLETCDAIIH----HGG---SGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLG 347 (400)
T ss_dssp ----CCCCCTTEEEECC-CC---HHHHHTTCSEEEE----CCC---HHHHHHHHHHTCCEEECCC---CHHHHHHHHHHT
T ss_pred ----cccCCCCEEEEee-cC---HHHHhhhhhheec----cCC---ccHHHHHHHhCCCEEEecCcccHHHHHHHHHHCC
Confidence 1123 68988865 76 4567899999886 122 4589999999999999654 33456666778
Q ss_pred cEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 409 NGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 409 ~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
.|+..++.+..+++|.+++++ ++.+++.++-+.++.
T Consensus 348 ~g~~l~~~~~~~~al~~lL~d----~~~r~~a~~l~~~~~ 383 (400)
T 4amg_A 348 IGFDAEAGSLGAEQCRRLLDD----AGLREAALRVRQEMS 383 (400)
T ss_dssp SEEECCTTTCSHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCchHHHHHHHHcC----HHHHHHHHHHHHHHH
Confidence 898888767778899999985 776666666665554
No 48
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.07 E-value=2.3e-08 Score=102.91 Aligned_cols=91 Identities=8% Similarity=-0.031 Sum_probs=69.4
Q ss_pred CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc----ccccccccCCcEEEeC---
Q 011969 342 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELVKVDKNGLLFS--- 414 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~----~~~e~v~~~~~G~l~~--- 414 (474)
++|.+.+. +|. ..++..||++|. ..| .+++.||+++|+|+|+.... ...+.+.+.+.|+.++
T Consensus 286 ~~v~~~~~-~~~---~~ll~~~d~~v~----~~G---~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~g~g~~~~~~~ 354 (416)
T 1rrv_A 286 DDCFAIDE-VNF---QALFRRVAAVIH----HGS---AGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPT 354 (416)
T ss_dssp TTEEEESS-CCH---HHHGGGSSEEEE----CCC---HHHHHHHHHHTCCEEECCCSBTHHHHHHHHHHHTSEEECSSSC
T ss_pred CCEEEecc-CCh---HHHhccCCEEEe----cCC---hhHHHHHHHcCCCEEEccCCCCcHHHHHHHHHCCCccCCCCCC
Confidence 58999876 764 567899999997 222 45999999999999998643 3445566778888874
Q ss_pred -CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 415 -SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 415 -~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
+.++++++|.++ + |++.++++++.+.++.
T Consensus 355 ~~~~~l~~~i~~l-~----~~~~~~~~~~~~~~~~ 384 (416)
T 1rrv_A 355 PTFESLSAALTTV-L----APETRARAEAVAGMVL 384 (416)
T ss_dssp CCHHHHHHHHHHH-T----SHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHh-h----CHHHHHHHHHHHHHHh
Confidence 689999999999 7 4777777776666544
No 49
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.04 E-value=6.9e-10 Score=100.15 Aligned_cols=134 Identities=12% Similarity=0.126 Sum_probs=95.3
Q ss_pred CCCCeEEEEEeecc---cCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHH
Q 011969 256 PNRPALVVSSTSWT---PDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 332 (474)
Q Consensus 256 ~~~~~~i~~~G~l~---~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~ 332 (474)
++++.+++++|+.. +.+.+..+++++..+ + .+++++++++..+
T Consensus 19 ~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~-------------------------------~-~~~~~~~g~~~~~-- 64 (170)
T 2o6l_A 19 GENGVVVFSLGSMVSNMTEERANVIASALAQI-------------------------------P-QKVLWRFDGNKPD-- 64 (170)
T ss_dssp TTTCEEEEECCSCCTTCCHHHHHHHHHHHTTS-------------------------------S-SEEEEECCSSCCT--
T ss_pred CCCCEEEEECCCCcccCCHHHHHHHHHHHHhC-------------------------------C-CeEEEEECCcCcc--
Confidence 34566889999986 445556666665431 2 5677777655322
Q ss_pred HHHHHHcCC-CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc----ccccccccC
Q 011969 333 EEKIRRLRL-KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELVKVD 407 (474)
Q Consensus 333 ~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~----~~~e~v~~~ 407 (474)
.+ ++|.+.|. +|.+++..+ ..||++|+ . . -++++.|||++|+|+|+.... ...+.+.+.
T Consensus 65 -------~~~~~v~~~~~-~~~~~~l~~-~~ad~~I~---~-~---G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~~ 128 (170)
T 2o6l_A 65 -------TLGLNTRLYKW-IPQNDLLGH-PKTRAFIT---H-G---GANGIYEAIYHGIPMVGIPLFADQPDNIAHMKAR 128 (170)
T ss_dssp -------TCCTTEEEESS-CCHHHHHTS-TTEEEEEE---C-C---CHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTT
T ss_pred -------cCCCcEEEecC-CCHHHHhcC-CCcCEEEE---c-C---CccHHHHHHHcCCCEEeccchhhHHHHHHHHHHc
Confidence 23 58999986 877554332 89999997 2 1 247999999999999999753 446677788
Q ss_pred CcEEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 011969 408 KNGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEM 447 (474)
Q Consensus 408 ~~G~l~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 447 (474)
+.|+.++ +.++++++|..++++ ++ +++++.+.
T Consensus 129 g~g~~~~~~~~~~~~l~~~i~~ll~~----~~----~~~~a~~~ 164 (170)
T 2o6l_A 129 GAAVRVDFNTMSSTDLLNALKRVIND----PS----YKENVMKL 164 (170)
T ss_dssp TSEEECCTTTCCHHHHHHHHHHHHHC----HH----HHHHHHHH
T ss_pred CCeEEeccccCCHHHHHHHHHHHHcC----HH----HHHHHHHH
Confidence 8999986 689999999999985 54 45555543
No 50
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=98.56 E-value=1.9e-05 Score=83.05 Aligned_cols=167 Identities=17% Similarity=0.134 Sum_probs=101.2
Q ss_pred CCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEE-EeCCCChHHHHH
Q 011969 256 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFII-TGKGPDKESYEE 334 (474)
Q Consensus 256 ~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i-vG~g~~~~~~~~ 334 (474)
++++++.+..|+.... ..+.+.+.+..+.+. +.++++ +|.+ ..+.+.+
T Consensus 271 ~~~~vVyvsfGS~~~~-~~~~~~el~~~l~~~-----------------------------~~~flw~~~~~-~~~~lp~ 319 (454)
T 3hbf_A 271 ENSSVVYISFGSVVTP-PPHELTALAESLEEC-----------------------------GFPFIWSFRGD-PKEKLPK 319 (454)
T ss_dssp CTTCEEEEECCSSCCC-CHHHHHHHHHHHHHH-----------------------------CCCEEEECCSC-HHHHSCT
T ss_pred CCCceEEEecCCCCcC-CHHHHHHHHHHHHhC-----------------------------CCeEEEEeCCc-chhcCCH
Confidence 4567677888888753 345555555555442 234444 4432 1111111
Q ss_pred -HHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc----ccccccccC-C
Q 011969 335 -KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELVKVD-K 408 (474)
Q Consensus 335 -~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~----~~~e~v~~~-~ 408 (474)
..++.. +|+...+ |+|+ ..++.++++.++. +++. -+.+.|++++|+|+|+.... .....+.+. +
T Consensus 320 ~~~~~~~-~~~~vv~-w~Pq---~~vL~h~~v~~fv---tH~G--~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~g 389 (454)
T 3hbf_A 320 GFLERTK-TKGKIVA-WAPQ---VEILKHSSVGVFL---THSG--WNSVLECIVGGVPMISRPFFGDQGLNTILTESVLE 389 (454)
T ss_dssp THHHHTT-TTEEEES-SCCH---HHHHHSTTEEEEE---ECCC--HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTSC
T ss_pred hHHhhcC-CceEEEe-eCCH---HHHHhhcCcCeEE---ecCC--cchHHHHHHcCCCEecCcccccHHHHHHHHHHhhC
Confidence 111221 5788884 6886 4788999966663 3331 34899999999999998642 233445553 8
Q ss_pred cEEEeC----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchH-----HHHHHHHHHHHHHHh
Q 011969 409 NGLLFS----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWA-----TEWEEHAKPLITEVI 469 (474)
Q Consensus 409 ~G~l~~----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~-----~~~~~~~~~~~~~~~ 469 (474)
.|+... +.+++++++.+++++ +..+++++++.++....+=+ .++ +.++.+++++.
T Consensus 390 ~Gv~l~~~~~~~~~l~~av~~ll~~-----~~~~~~r~~a~~l~~~~~~a~~~gGsS~-~~l~~~v~~i~ 453 (454)
T 3hbf_A 390 IGVGVDNGVLTKESIKKALELTMSS-----EKGGIMRQKIVKLKESAFKAVEQNGTSA-MDFTTLIQIVT 453 (454)
T ss_dssp SEEECGGGSCCHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHHHHHTSTTSHHH-HHHHHHHHHHT
T ss_pred eeEEecCCCCCHHHHHHHHHHHHCC-----ChHHHHHHHHHHHHHHHHHhhccCCCHH-HHHHHHHHHHh
Confidence 888874 589999999999974 34567788877754222211 233 34666666654
No 51
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=98.52 E-value=2.1e-06 Score=94.85 Aligned_cols=183 Identities=13% Similarity=0.079 Sum_probs=122.8
Q ss_pred cCCCCCeEEEEEeecccCCCHHH-HHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh-HH
Q 011969 254 LKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-ES 331 (474)
Q Consensus 254 ~~~~~~~~i~~~G~l~~~k~~~~-Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~-~~ 331 (474)
+.++.+ +++++.|++..|+.++ ++..+..+.+ |.+++........+++.|++... +.
T Consensus 522 vdpd~l-~~~~vkRl~eYKRq~Lnil~ii~~~~~--------------------i~~~~~~~~~p~q~If~GKA~P~y~~ 580 (796)
T 1l5w_A 522 INPQAI-FDIQIKRLHEYKRQHLNLLHILALYKE--------------------IRENPQADRVPRVFLFGAKAAPGYYL 580 (796)
T ss_dssp CCTTSE-EEEEESCCCGGGTHHHHHHHHHHHHHH--------------------HHTCTTCCCCCEEEEEECCCCTTCHH
T ss_pred cCCCcc-eEeeeecchhhcccCEeHHHHHHHHHH--------------------HhcCCCCCCCCeEEEEEecCChhHHH
Confidence 445555 8899999999999999 8888887654 22333222345899999988533 21
Q ss_pred -------HHHHHH----HcCC-C--cEEEecCCCCcccHHHHHhcccEEEeeccCCC--CCCCchHHHHHHhcCCcEEEe
Q 011969 332 -------YEEKIR----RLRL-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS--GLDLPMKVVDMFGCGLPVCAV 395 (474)
Q Consensus 332 -------~~~~~~----~l~l-~--~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~--~e~~p~kv~Eama~G~PVia~ 395 (474)
+.+.++ +-.. + +|.|+.. -+.+-...++..||+.++ +|. .|.+|+.=+=+|..|.+.|++
T Consensus 581 aK~iIk~i~~va~~in~Dp~~~~~lKVvfl~n-Y~vslA~~I~~gaDv~l~---~S~a~~EAsGTs~MKam~NGaL~iGt 656 (796)
T 1l5w_A 581 AKNIIFAINKVADVINNDPLVGDKLKVVFLPD-YCVSAAEKLIPAADISEQ---ISTAGKEASGTGNMKLALNGALTVGT 656 (796)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTGGGEEEEECSS-CCHHHHHHHGGGCSEEEE---CCCTTTCCCCSHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHHHHhccccccCCceEEEEECC-CCHHHHHHHhhhcceeec---CCCCCCCCCchHHHHHHHcCCeeecC
Confidence 222232 1123 4 6999877 778888999999999999 554 699999999999999999998
Q ss_pred ccccccccccc--CCcEEEeC-CHHHHHHHHH------HHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Q 011969 396 SYSCIEELVKV--DKNGLLFS-SSSELADQLL------MLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLIT 466 (474)
Q Consensus 396 ~~~~~~e~v~~--~~~G~l~~-~~~~la~~i~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 466 (474)
--|...|+.+. .+|||+|. +.+++.+.-. .++.. ++ ..+++...+.. ..++|... +..++++.
T Consensus 657 LDGanvEi~e~vG~~NgF~FG~~~~ev~~l~~~~y~a~~~y~~---~~-~~~~vvd~~~~--g~fs~~~~--~~y~~Ly~ 728 (796)
T 1l5w_A 657 LDGANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKK---DK-VLDAVLKELES--GKYSDGDK--HAFDQMLH 728 (796)
T ss_dssp SCTTHHHHHHHHCGGGSEECSCCHHHHHHHHHHCCCHHHHHHH---CH-HHHHHHHHHHH--TTTTTTCT--TTTHHHHH
T ss_pred cCCeeeehhhccCCCcEEEecCCHHHHHHHHHcccCHHHHhhc---CH-HHHHHHHHHHc--CCCCCCcH--HHHHHHHH
Confidence 77777776544 47999997 5666653222 12222 34 45555555554 25677553 22555555
Q ss_pred HHh
Q 011969 467 EVI 469 (474)
Q Consensus 467 ~~~ 469 (474)
.+.
T Consensus 729 ~L~ 731 (796)
T 1l5w_A 729 SIG 731 (796)
T ss_dssp HTS
T ss_pred HHh
Confidence 553
No 52
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=98.47 E-value=2.1e-05 Score=82.48 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=75.6
Q ss_pred CcEEEecCCCCcccHHHHHh--cccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----cccccccccC-CcEEEeC
Q 011969 342 KRVAFRTMWLSAEDYPLLLG--SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELVKVD-KNGLLFS 414 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~--~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~v~~~-~~G~l~~ 414 (474)
+++...+ |+|+. .+|. .+|++|. -.| .+++.||+++|+|+|+... ......+.+. +.|+..+
T Consensus 325 ~~~~v~~-w~pq~---~vL~h~~~~~fvt----h~G---~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~~~~g~g~~l~ 393 (456)
T 2c1x_A 325 GYGMVVP-WAPQA---EVLAHEAVGAFVT----HCG---WNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIE 393 (456)
T ss_dssp TTEEEES-CCCHH---HHHTSTTEEEEEE----CCC---HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECG
T ss_pred CceEEec-CCCHH---HHhcCCcCCEEEe----cCC---cchHHHHHHhCceEEecCChhhHHHHHHHHHHHhCeEEEec
Confidence 4788886 68764 5788 5566665 222 3599999999999999864 2334455566 7888874
Q ss_pred ----CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccch-----HHHHHHHHHHHHHHHhh
Q 011969 415 ----SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARW-----ATEWEEHAKPLITEVIS 470 (474)
Q Consensus 415 ----~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w-----~~~~~~~~~~~~~~~~~ 470 (474)
+.++++++|.+++++ ++ .+++++++.++....+= ..++ +.++.+++++.+
T Consensus 394 ~~~~~~~~l~~~i~~ll~~----~~-~~~~r~~a~~l~~~~~~a~~~gGsS~-~~l~~~v~~~~~ 452 (456)
T 2c1x_A 394 GGVFTKSGLMSCFDQILSQ----EK-GKKLRENLRALRETADRAVGPKGSST-ENFITLVDLVSK 452 (456)
T ss_dssp GGSCCHHHHHHHHHHHHHS----HH-HHHHHHHHHHHHHHHHHHTSTTCHHH-HHHHHHHHHHTS
T ss_pred CCCcCHHHHHHHHHHHHCC----Cc-HHHHHHHHHHHHHHHHHhhhcCCcHH-HHHHHHHHHHHh
Confidence 589999999999985 54 67788888775533211 1223 346666666543
No 53
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=98.44 E-value=3.7e-05 Score=81.00 Aligned_cols=112 Identities=16% Similarity=0.236 Sum_probs=76.1
Q ss_pred CcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc----cccccc-ccCCcEEEeC--
Q 011969 342 KRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELV-KVDKNGLLFS-- 414 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~----~~~e~v-~~~~~G~l~~-- 414 (474)
+++.+.+ |+|+. .+|.++++.++. +++. .+.+.||+++|+|+|+.... .....+ +..+.|+...
T Consensus 353 ~~~~v~~-~~pq~---~~L~h~~~~~~v---th~G--~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~~~~G~g~~l~~~ 423 (482)
T 2pq6_A 353 DRGLIAS-WCPQD---KVLNHPSIGGFL---THCG--WNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTN 423 (482)
T ss_dssp TTEEEES-CCCHH---HHHTSTTEEEEE---ECCC--HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTSCCEEECCSS
T ss_pred CCEEEEe-ecCHH---HHhcCCCCCEEE---ecCC--cchHHHHHHcCCCEEecCcccchHHHHHHHHHHhCEEEEECCC
Confidence 5788886 68875 478887774442 2331 35999999999999998642 233334 3567888875
Q ss_pred -CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchH-----HHHHHHHHHHHHHH
Q 011969 415 -SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMGLSARWA-----TEWEEHAKPLITEV 468 (474)
Q Consensus 415 -~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~-----~~~~~~~~~~~~~~ 468 (474)
+.++++++|.+++.+ ++ .+++++++.++....+=+ .++ +.++.+++++
T Consensus 424 ~~~~~l~~~i~~ll~~----~~-~~~~r~~a~~l~~~~~~a~~~gGss~-~~l~~~v~~~ 477 (482)
T 2pq6_A 424 VKREELAKLINEVIAG----DK-GKKMKQKAMELKKKAEENTRPGGCSY-MNLNKVIKDV 477 (482)
T ss_dssp CCHHHHHHHHHHHHTS----HH-HHHHHHHHHHHHHHHHHHTSTTCHHH-HHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcC----Cc-HHHHHHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHH
Confidence 689999999999985 54 577888888765332211 222 4466666665
No 54
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=98.39 E-value=2.4e-06 Score=94.37 Aligned_cols=136 Identities=14% Similarity=0.094 Sum_probs=99.9
Q ss_pred cCCCCCeEEEEEeecccCCCHHH-HHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh-HH
Q 011969 254 LKPNRPALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-ES 331 (474)
Q Consensus 254 ~~~~~~~~i~~~G~l~~~k~~~~-Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~-~~ 331 (474)
+.++.+ +++++.|++..|+.++ ++..+..+.+ |.+++........+++.|++... +.
T Consensus 512 vdpd~l-~~~~vkRlheYKRq~Lnil~ii~~~~~--------------------i~~~~~~~~~p~q~If~GKA~P~y~~ 570 (796)
T 2c4m_A 512 IDPESI-FDVQIKRLHEYKRQLMNALYVLDLYFR--------------------IKEDGLTDIPARTVIFGAKAAPGYVR 570 (796)
T ss_dssp CCTTSE-EEEEECCCCGGGTHHHHHHHHHHHHHH--------------------HHTSCCCSSCCEEEEEECCCCTTCHH
T ss_pred CCCCCc-EEEEeecchhhcccCEeHHHHHHHHHH--------------------HhhCCCCCCCCeEEEEEecCCHhHHH
Confidence 445555 8899999999999999 8888887654 22222222245899999988533 21
Q ss_pred -------HHHHHH----HcCC-C--cEEEecCCCCcccHHHHHhcccEEEeeccCCC--CCCCchHHHHHHhcCCcEEEe
Q 011969 332 -------YEEKIR----RLRL-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS--GLDLPMKVVDMFGCGLPVCAV 395 (474)
Q Consensus 332 -------~~~~~~----~l~l-~--~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~--~e~~p~kv~Eama~G~PVia~ 395 (474)
+.+.++ +-.. + +|.|+.. -+.+-...++..||+.++ +|. .|.+|+.=+=+|..|.+.|++
T Consensus 571 aK~iIk~i~~va~~in~dp~~~~~lKVvFl~n-Y~vslA~~I~~gaDv~l~---~S~a~~EAsGTs~MKam~NGaL~iGt 646 (796)
T 2c4m_A 571 AKAIIKLINSIADLVNNDPEVSPLLKVVFVEN-YNVSPAEHILPASDVSEQ---ISTAGKEASGTSNMKFMMNGALTLGT 646 (796)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTTTTEEEEEETT-CCHHHHHHHGGGCSEEEE---CCCTTSCSCCHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHhccccccCCceEEEEECC-CCHHHHHHHhhhcceeec---CCCCCCCCCchHHHHHHHcCCeEEec
Confidence 223333 1123 4 7999877 788888999999999999 554 699999999999999999999
Q ss_pred ccccccccccc--CCcEEEeC
Q 011969 396 SYSCIEELVKV--DKNGLLFS 414 (474)
Q Consensus 396 ~~~~~~e~v~~--~~~G~l~~ 414 (474)
--|...|+.+. .+|||+|.
T Consensus 647 LDGanvEi~e~vG~~NgF~FG 667 (796)
T 2c4m_A 647 MDGANVEIVDSVGEENAYIFG 667 (796)
T ss_dssp SSTHHHHHHHHHCGGGSEEES
T ss_pred cCCeEeehhhhcCCCcEEEec
Confidence 77777776544 47999996
No 55
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=98.34 E-value=0.00055 Score=72.11 Aligned_cols=90 Identities=19% Similarity=0.178 Sum_probs=61.5
Q ss_pred EecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----ccccccc-ccCCcEEEeC------
Q 011969 346 FRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEELV-KVDKNGLLFS------ 414 (474)
Q Consensus 346 f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~v-~~~~~G~l~~------ 414 (474)
....|+|+. .+|.++++.++. +++. -+.+.||+++|+|+|+... ......+ +.-+.|+...
T Consensus 342 ~v~~w~Pq~---~vL~h~~v~~fv---tHgG--~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~~~~G~g~~l~~~~~~~ 413 (480)
T 2vch_A 342 VIPFWAPQA---QVLAHPSTGGFL---THCG--WNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGL 413 (480)
T ss_dssp EEESCCCHH---HHHHSTTEEEEE---ECCC--HHHHHHHHHHTCCEEECCCSTTHHHHHHHHHHTTCCEECCCCCTTSC
T ss_pred EEeCccCHH---HHhCCCCcCeEE---eccc--chhHHHHHHcCCCEEeccccccchHHHHHHHHHhCeEEEeecccCCc
Confidence 444568764 789999976552 3331 3489999999999999864 2233443 5667787652
Q ss_pred -CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 415 -SSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 415 -~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
+.++++++|.+++.+ + .-+++++++.++.
T Consensus 414 ~~~~~l~~av~~vl~~----~-~~~~~r~~a~~l~ 443 (480)
T 2vch_A 414 VRREEVARVVKGLMEG----E-EGKGVRNKMKELK 443 (480)
T ss_dssp CCHHHHHHHHHHHHTS----T-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcC----c-chHHHHHHHHHHH
Confidence 479999999999974 2 3355666666544
No 56
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=98.27 E-value=0.0021 Score=67.29 Aligned_cols=131 Identities=16% Similarity=0.098 Sum_probs=80.7
Q ss_pred CCCCeEEEEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEE-EEEeCC--CChHHH
Q 011969 256 PNRPALVVSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLF-IITGKG--PDKESY 332 (474)
Q Consensus 256 ~~~~~~i~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ivG~g--~~~~~~ 332 (474)
++++++++..|+....-+.+.+.+.+..+.+. +.++ +.+|.+ ...+.+
T Consensus 274 ~~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~-----------------------------~~~~l~~~~~~~~~l~~~~ 324 (463)
T 2acv_A 274 PDKSVVFLCFGSMGVSFGPSQIREIALGLKHS-----------------------------GVRFLWSNSAEKKVFPEGF 324 (463)
T ss_dssp CTTCEEEEECCSSCCCCCHHHHHHHHHHHHHH-----------------------------TCEEEEECCCCGGGSCTTH
T ss_pred CCCceEEEEeccccccCCHHHHHHHHHHHHhC-----------------------------CCcEEEEECCCcccCChhH
Confidence 45666888889887323444454555555442 2444 445543 111233
Q ss_pred HHHHHHcCCCcEEEecCCCCcccHHHHHh--cccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc----cccccc-cc
Q 011969 333 EEKIRRLRLKRVAFRTMWLSAEDYPLLLG--SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIEEL-VK 405 (474)
Q Consensus 333 ~~~~~~l~l~~V~f~g~~v~~~~~~~~l~--~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~----~~~~e~-v~ 405 (474)
.+....- +++...+ |+|+. .+|. .+|++|. -.| .+++.||+++|+|+|+... ...... +.
T Consensus 325 ~~~~~~~--~~~~v~~-w~pq~---~vL~h~~~~~fvt----h~G---~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv~ 391 (463)
T 2acv_A 325 LEWMELE--GKGMICG-WAPQV---EVLAHKAIGGFVS----HCG---WNSILESMWFGVPILTWPIYAEQQLNAFRLVK 391 (463)
T ss_dssp HHHHHHH--CSEEEES-SCCHH---HHHHSTTEEEEEE----CCC---HHHHHHHHHTTCCEEECCCSTTHHHHHHHHHH
T ss_pred HHhhccC--CCEEEEc-cCCHH---HHhCCCccCeEEe----cCC---chhHHHHHHcCCCeeeccchhhhHHHHHHHHH
Confidence 3322101 3677777 78764 4676 4666665 222 3599999999999999864 223344 46
Q ss_pred cCCcEEEe-C---------CHHHHHHHHHHHHh
Q 011969 406 VDKNGLLF-S---------SSSELADQLLMLFK 428 (474)
Q Consensus 406 ~~~~G~l~-~---------~~~~la~~i~~l~~ 428 (474)
..+.|+.. . +.++++++|.++++
T Consensus 392 ~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~ll~ 424 (463)
T 2acv_A 392 EWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMD 424 (463)
T ss_dssp TSCCEEESCSSCCTTCCCCCHHHHHHHHHHHTC
T ss_pred HcCeEEEEecccCCCCccccHHHHHHHHHHHHh
Confidence 77888887 1 57899999999986
No 57
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=98.01 E-value=0.00025 Score=70.53 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=71.0
Q ss_pred CCCCeEEEEEee-cccCCCHH--HHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHH
Q 011969 256 PNRPALVVSSTS-WTPDEDFG--ILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESY 332 (474)
Q Consensus 256 ~~~~~~i~~~G~-l~~~k~~~--~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~ 332 (474)
.+++++++..|+ ..+.|... .+.+++..+.+ .++.++++|...+.+..
T Consensus 178 ~~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~-----------------------------~~~~vvl~g~~~e~~~~ 228 (348)
T 1psw_A 178 SERPMIGFCPGAEFGPAKRWPHYHYAELAKQLID-----------------------------EGYQVVLFGSAKDHEAG 228 (348)
T ss_dssp SSSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHH-----------------------------TTCEEEECCCGGGHHHH
T ss_pred CCCcEEEEECCCCccccCCCCHHHHHHHHHHHHH-----------------------------CCCeEEEEeChhhHHHH
Confidence 345667777777 55555554 77777777765 26788888876655444
Q ss_pred HHHHHHcC----CCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec
Q 011969 333 EEKIRRLR----LKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 333 ~~~~~~l~----l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~ 396 (474)
++..+..+ .+.+.+.|. .+-.++..+++.||++|. .++| .+-.|.|+|+|+|+--
T Consensus 229 ~~i~~~~~~~~~~~~~~l~g~-~sl~e~~ali~~a~l~I~---~Dsg-----~~HlAaa~g~P~v~lf 287 (348)
T 1psw_A 229 NEILAALNTEQQAWCRNLAGE-TQLDQAVILIAACKAIVT---NDSG-----LMHVAAALNRPLVALY 287 (348)
T ss_dssp HHHHTTSCHHHHTTEEECTTT-SCHHHHHHHHHTSSEEEE---ESSH-----HHHHHHHTTCCEEEEE
T ss_pred HHHHHhhhhccccceEeccCc-CCHHHHHHHHHhCCEEEe---cCCH-----HHHHHHHcCCCEEEEE
Confidence 44443332 123466676 888999999999999998 3444 3344999999999864
No 58
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.98 E-value=0.00021 Score=72.18 Aligned_cols=103 Identities=15% Similarity=0.143 Sum_probs=72.9
Q ss_pred CCCCeEEEEEeecccCCC--HHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHH
Q 011969 256 PNRPALVVSSTSWTPDED--FGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYE 333 (474)
Q Consensus 256 ~~~~~~i~~~G~l~~~k~--~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~ 333 (474)
++++++++..|+-.+.|. .+...+.+..+.++ ++.++++|...+.+..+
T Consensus 183 ~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~-----------------------------g~~vvl~g~~~e~~~~~ 233 (349)
T 3tov_A 183 DTDILIGFNIGSAVPEKRWPAERFAHVADYFGRL-----------------------------GYKTVFFGGPMDLEMVQ 233 (349)
T ss_dssp TTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHHH-----------------------------TCEEEECCCTTTHHHHH
T ss_pred CCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHhC-----------------------------CCeEEEEeCcchHHHHH
Confidence 456667777665434444 45677777777652 46778888776666666
Q ss_pred HHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec
Q 011969 334 EKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 334 ~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~ 396 (474)
+.++.++.+.+.+.|. .+-.++..+++.||++|. ..+| ..-+ |.|+|+|+|+--
T Consensus 234 ~i~~~~~~~~~~l~g~-~sl~e~~ali~~a~~~i~---~DsG----~~Hl-Aaa~g~P~v~lf 287 (349)
T 3tov_A 234 PVVEQMETKPIVATGK-FQLGPLAAAMNRCNLLIT---NDSG----PMHV-GISQGVPIVALY 287 (349)
T ss_dssp HHHHTCSSCCEECTTC-CCHHHHHHHHHTCSEEEE---ESSH----HHHH-HHTTTCCEEEEC
T ss_pred HHHHhcccccEEeeCC-CCHHHHHHHHHhCCEEEE---CCCC----HHHH-HHhcCCCEEEEE
Confidence 6666655445677777 888999999999999998 3344 2333 899999999974
No 59
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=97.85 E-value=0.0002 Score=79.50 Aligned_cols=182 Identities=14% Similarity=0.091 Sum_probs=119.6
Q ss_pred cCCCCCeEEEEEeecccCCCHHHH-HHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh--H
Q 011969 254 LKPNRPALVVSSTSWTPDEDFGIL-LEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK--E 330 (474)
Q Consensus 254 ~~~~~~~~i~~~G~l~~~k~~~~L-i~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~--~ 330 (474)
+.++.+ +++++.|++..|+.+++ +..+..+.+ |.+++........+++.|++... .
T Consensus 546 vdpd~l-~~g~vkRl~eYKRq~L~~l~~i~~~~~--------------------i~~~~~~~~~p~q~If~GKA~P~y~~ 604 (824)
T 2gj4_A 546 INPNSL-FDVQVKRIHEYKRQLLNCLHVITLYNR--------------------IKKEPNKFVVPRTVMIGGKAAPGYHM 604 (824)
T ss_dssp CCTTSE-EEEEESCCCGGGTHHHHHHHHHHHHHH--------------------HHHCTTSCCCCEEEEEECCCCTTCHH
T ss_pred cCCCcc-eEeeeecchhhcchhhHHHHHHHHHHH--------------------HHhCCCCCCCCEEEEEEEeCCHhHHH
Confidence 445555 88999999999999998 777776643 11111111225899999988532 1
Q ss_pred H------HHHHHHHcC----C-C--cEEEecCCCCcccHHHHHhcccEEEeeccCCC--CCCCchHHHHHHhcCCcEEEe
Q 011969 331 S------YEEKIRRLR----L-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSS--GLDLPMKVVDMFGCGLPVCAV 395 (474)
Q Consensus 331 ~------~~~~~~~l~----l-~--~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~--~e~~p~kv~Eama~G~PVia~ 395 (474)
. +.+.++... + + +|.|+.. .+.+-...++..||+.++ +|. .|.+|+.=+=+|..|.+.|++
T Consensus 605 aK~iIkli~~va~~in~Dp~v~~~lKVvFl~n-YdvslA~~I~~gaDv~l~---~S~ag~EAsGTs~MKamlNGaLtigt 680 (824)
T 2gj4_A 605 AKMIIKLITAIGDVVNHDPVVGDRLRVIFLEN-YRVSLAEKVIPAADLSEQ---ISTAGTEASGTGNMKFMLNGALTIGT 680 (824)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTGGGEEEEEETT-CCHHHHHHHGGGCSEEEE---CCCTTSCSCCSHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHHHHhccCcccCCceEEEEECC-CCHHHHHHHhhhcceeec---CCCCCCCCCchHHHHHHHcCceEEEE
Confidence 1 334444331 2 3 6999876 678888899999999999 454 699999999999999999998
Q ss_pred cccccccccc--cCCcEEEeC-CHHHHHHHHH-------HHHhCCCCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Q 011969 396 SYSCIEELVK--VDKNGLLFS-SSSELADQLL-------MLFKGFPDDSDVLKKLRNGTLEMGLSARWATEWEEHAKPLI 465 (474)
Q Consensus 396 ~~~~~~e~v~--~~~~G~l~~-~~~~la~~i~-------~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 465 (474)
--|...|+.+ ..+||+++. ..+++ ..+. .+++. ++ ..+++-.++.. ..++|... +...+++
T Consensus 681 lDGanvEi~e~vG~~Ngf~FG~~~~ev-~~l~~~~~~a~~~Y~~---~~-~l~~v~d~i~~--g~fs~~~~--~~y~~ly 751 (824)
T 2gj4_A 681 MDGANVEMAEEAGEENFFIFGMRVEDV-DRLDQRGYNAQEYYDR---IP-ELRQIIEQLSS--GFFSPKQP--DLFKDIV 751 (824)
T ss_dssp SCTTHHHHHHHHCGGGSEECSCCHHHH-HHHHHHCCCHHHHHHH---CH-HHHHHHHHHHH--TTTCTTST--TTTHHHH
T ss_pred ecCccchhhhccCCCCEEEeCCcHHHH-HHHHHcCCCHHHHhcC---CH-HHHHHHHHHHh--CCCCCCCh--HHHHHHH
Confidence 7665556543 457999997 46666 4442 23332 22 34444444443 35777654 2255555
Q ss_pred HHHh
Q 011969 466 TEVI 469 (474)
Q Consensus 466 ~~~~ 469 (474)
.++.
T Consensus 752 ~~l~ 755 (824)
T 2gj4_A 752 NMLM 755 (824)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
No 60
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.83 E-value=0.00045 Score=76.56 Aligned_cols=142 Identities=14% Similarity=0.086 Sum_probs=105.4
Q ss_pred cCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC-hHHHHHHHHHcCC--CcEEE
Q 011969 270 PDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD-KESYEEKIRRLRL--KRVAF 346 (474)
Q Consensus 270 ~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~-~~~~~~~~~~l~l--~~V~f 346 (474)
..|=-+..++....+.++ .|+-+|++...+.. .+.+++.+++.|+ ++|.|
T Consensus 532 ~~Ki~p~~~~~W~~IL~~---------------------------vP~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f 584 (723)
T 4gyw_A 532 LYKIDPSTLQMWANILKR---------------------------VPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIF 584 (723)
T ss_dssp GGGCCHHHHHHHHHHHHH---------------------------CSSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEE
T ss_pred cccCCHHHHHHHHHHHHh---------------------------CCCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEE
Confidence 445556677777777664 79999988876543 4678888999999 59999
Q ss_pred ecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccccccc-----ccc-cCCcEEEeCCHHHHH
Q 011969 347 RTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEE-----LVK-VDKNGLLFSSSSELA 420 (474)
Q Consensus 347 ~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e-----~v~-~~~~G~l~~~~~~la 420 (474)
.+. .+.++....|+.+|+++= +...+=+++.+||+.+|+|||+-....+.. ++. -|-..+++.|.++..
T Consensus 585 ~~~-~~~~~~l~~~~~~Di~LD----t~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~~~~~Y~ 659 (723)
T 4gyw_A 585 SPV-APKEEHVRRGQLADVCLD----TPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYE 659 (723)
T ss_dssp EEC-CCHHHHHHHGGGCSEEEC----CSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCSSHHHHH
T ss_pred CCC-CCHHHHHHHhCCCeEEeC----CCCcCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccccCCHHHHH
Confidence 998 999999999999999996 433345789999999999999975322211 111 122334567899999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 011969 421 DQLLMLFKGFPDDSDVLKKLRNGTLEM 447 (474)
Q Consensus 421 ~~i~~l~~~~~~~~~~~~~~~~~~~~~ 447 (474)
+....+.++ ++.++++|+..++.
T Consensus 660 ~~a~~la~d----~~~l~~lr~~l~~~ 682 (723)
T 4gyw_A 660 DIAVKLGTD----LEYLKKVRGKVWKQ 682 (723)
T ss_dssp HHHHHHHHC----HHHHHHHHHHHHHH
T ss_pred HHHHHHhcC----HHHHHHHHHHHHHH
Confidence 999999884 88888888777653
No 61
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=97.62 E-value=0.00067 Score=75.02 Aligned_cols=222 Identities=14% Similarity=0.073 Sum_probs=126.8
Q ss_pred hhCCCcEEEEecCchhhhhhhccCCC----chHHHHHHHHHHHHhhhcCEEEEeCHHHHHHHHHHhCCc-eEEEeCCCC-
Q 011969 124 SLRRSAFIVDWHNFGYTLLSLSLGRR----SHFVSIYRWIEKYYGKMANGCLCVTQAMQHELAQNWGIK-ATVLYDQPP- 197 (474)
Q Consensus 124 ~~~~~~~i~~~h~~~~~~~~~~~~~~----~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~~l~~~~~~~-~~vi~n~~~- 197 (474)
+..+..+|-+||+.+...+....... .......+.+. ...+..|.+++.|+.+.+.+.+.++.+ -.++..|-|
T Consensus 433 k~~~~~~iq~wHG~~lK~~g~d~~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR 511 (729)
T 3l7i_A 433 KKENQTYIQTWHGTPLKRLANDMKVVRMPGTTTPKYKRNFN-RETSRWDYLISPNRYSTEIFRSAFWMDEERILEIGYPR 511 (729)
T ss_dssp CCTTCEEEECCSSCCSBCCGGGCSCCCCTTCCHHHHHHHHH-HHHTTCSEEEESSHHHHHHHHHHTCCCGGGEEESCCGG
T ss_pred cCCCcEEEECCCCCchhhccccccccccccccCHHHHHHHH-HhhccCCEEEeCCHHHHHHHHHHhCCCcceEEEcCCCc
Confidence 44567788899998533222111110 11111111111 223567999999999999898888876 456666644
Q ss_pred --CCC-CCCChHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEeecccCCC-
Q 011969 198 --EFF-HPTSLEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSSTSWTPDED- 273 (474)
Q Consensus 198 --~~f-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~l~~~k~- 273 (474)
..| .+...+.+..++++++ ++.+++ +|+|.-+|.....
T Consensus 512 ~D~l~~~~~~~~~~~~~~~~~~-------------------------------------~~~~kk-~ILyaPT~r~~~~~ 553 (729)
T 3l7i_A 512 NDVLVNRANDQEYLDEIRTHLN-------------------------------------LPSDKK-VIMYAPTWRDDEFV 553 (729)
T ss_dssp GHHHHHSTTCHHHHHHHHHHTT-------------------------------------CCSSCE-EEEECCCCCGGGCC
T ss_pred hHHHhcccchHHHHHHHHHHhC-------------------------------------CCCCCe-EEEEeeeeeCCccc
Confidence 223 2223334555666665 334444 8899988776421
Q ss_pred --------HHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCChHHHHHHHHHcCC-CcE
Q 011969 274 --------FGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDKESYEEKIRRLRL-KRV 344 (474)
Q Consensus 274 --------~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~~~~~~~~~~l~l-~~V 344 (474)
...-++.+.... .+++.+++-.. |. +.+.....+. +.+
T Consensus 554 ~~~~~~~~~~~~~~~l~~~l-----------------------------~~~~~li~r~H-p~---~~~~~~~~~~~~~~ 600 (729)
T 3l7i_A 554 SKGKYLFELKIDLDNLYKEL-----------------------------GDDYVILLRMH-YL---ISNALDLSGYENFA 600 (729)
T ss_dssp GGGSSCCCCTTCHHHHHHHH-----------------------------TTTEEEEECCC-HH---HHTTCCCTTCTTTE
T ss_pred cccccccchhhHHHHHHHHc-----------------------------CCCeEEEEecC-cc---hhccccccccCCcE
Confidence 111122222211 24677776553 21 1111111122 344
Q ss_pred EEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc--c-------ccccccccCCcEEEeCC
Q 011969 345 AFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY--S-------CIEELVKVDKNGLLFSS 415 (474)
Q Consensus 345 ~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~--~-------~~~e~v~~~~~G~l~~~ 415 (474)
.-... ..++..++..||++|. .-+ ..++|++..++|||.... . |...-..+.-.|-++.+
T Consensus 601 ~~~~~---~~di~~ll~~aD~lIT---DyS-----Sv~fD~~~l~kPiif~~~D~~~Y~~~~rg~y~d~~~~~pg~~~~~ 669 (729)
T 3l7i_A 601 IDVSN---YNDVSELFLISDCLIT---DYS-----SVMFDYGILKRPQFFFAYDIDKYDKGLRGFYMNYMEDLPGPIYTE 669 (729)
T ss_dssp EECTT---CSCHHHHHHTCSEEEE---SSC-----THHHHHGGGCCCEEEECTTTTTTTSSCCSBSSCTTSSSSSCEESS
T ss_pred EeCCC---CcCHHHHHHHhCEEEe---ech-----HHHHhHHhhCCCEEEecCCHHHHhhccCCcccChhHhCCCCeECC
Confidence 44433 5799999999999997 333 489999999999998731 1 11111222345777889
Q ss_pred HHHHHHHHHHHHh
Q 011969 416 SSELADQLLMLFK 428 (474)
Q Consensus 416 ~~~la~~i~~l~~ 428 (474)
.++|.++|.....
T Consensus 670 ~~eL~~~i~~~~~ 682 (729)
T 3l7i_A 670 PYGLAKELKNLDK 682 (729)
T ss_dssp HHHHHHHHTTHHH
T ss_pred HHHHHHHHhhhhc
Confidence 9999999998765
No 62
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=96.87 E-value=0.0039 Score=61.23 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=51.2
Q ss_pred EEEEEeCCC-ChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc
Q 011969 319 LFIITGKGP-DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY 397 (474)
Q Consensus 319 ~l~ivG~g~-~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~ 397 (474)
..+++|.+. ..+++++.+++. +++.+.++ .+++..+|..||++|+. + |.++.|++++|+|.|....
T Consensus 186 i~vv~G~~~~~~~~l~~~~~~~--~~v~v~~~---~~~m~~~m~~aDlvI~~-----g---G~T~~E~~~~g~P~i~ip~ 252 (282)
T 3hbm_A 186 ISIATSSSNPNLKKLQKFAKLH--NNIRLFID---HENIAKLMNESNKLIIS-----A---SSLVNEALLLKANFKAICY 252 (282)
T ss_dssp EEEEECTTCTTHHHHHHHHHTC--SSEEEEES---CSCHHHHHHTEEEEEEE-----S---SHHHHHHHHTTCCEEEECC
T ss_pred EEEEECCCchHHHHHHHHHhhC--CCEEEEeC---HHHHHHHHHHCCEEEEC-----C---cHHHHHHHHcCCCEEEEeC
Confidence 446778764 346666665543 48999988 79999999999999982 2 3699999999999999753
No 63
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=96.54 E-value=0.0018 Score=61.52 Aligned_cols=73 Identities=10% Similarity=0.039 Sum_probs=52.4
Q ss_pred cEEEecCCCCcccHHHHHh-cccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccccc--------ccccccCCcEEEe
Q 011969 343 RVAFRTMWLSAEDYPLLLG-SADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI--------EELVKVDKNGLLF 413 (474)
Q Consensus 343 ~V~f~g~~v~~~~~~~~l~-~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~--------~e~v~~~~~G~l~ 413 (474)
++...++ .+++..+|. .||++|+ -.| ..++.|++++|+|.|....+.. ++.+...+.++++
T Consensus 115 ~v~v~~f---~~~m~~~l~~~AdlvIs----haG---agTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~~ 184 (224)
T 2jzc_A 115 KVIGFDF---STKMQSIIRDYSDLVIS----HAG---TGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSC 184 (224)
T ss_dssp EEEECCS---SSSHHHHHHHHCSCEEE----SSC---HHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCEE
T ss_pred eEEEeec---cchHHHHHHhcCCEEEE----CCc---HHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEEc
Confidence 4555555 489999999 9999997 223 4599999999999999876421 2234343445554
Q ss_pred CCHHHHHHHHHHH
Q 011969 414 SSSSELADQLLML 426 (474)
Q Consensus 414 ~~~~~la~~i~~l 426 (474)
++++|+++|..+
T Consensus 185 -~~~~L~~~i~~l 196 (224)
T 2jzc_A 185 -APTETGLIAGLR 196 (224)
T ss_dssp -CSCTTTHHHHHH
T ss_pred -CHHHHHHHHHHH
Confidence 677788888877
No 64
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=94.43 E-value=0.094 Score=51.38 Aligned_cols=133 Identities=13% Similarity=0.052 Sum_probs=78.5
Q ss_pred CCCeEEEEEeecccCCCHH--HHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCCh-HHHH
Q 011969 257 NRPALVVSSTSWTPDEDFG--ILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPDK-ESYE 333 (474)
Q Consensus 257 ~~~~~i~~~G~l~~~k~~~--~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~~-~~~~ 333 (474)
+++++++..|.=.+.|... ...+.+..+.+ .+++++++++++.. +..+
T Consensus 177 ~~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~-----------------------------~~~~vvl~~g~~~e~~~~~ 227 (326)
T 2gt1_A 177 AGEYAVFLHATTRDDKHWPEEHWRELIGLLAD-----------------------------SGIRIKLPWGAPHEEERAK 227 (326)
T ss_dssp TTSEEEEECCCSSGGGSCCHHHHHHHHHHTTT-----------------------------TCCEEEECCSSHHHHHHHH
T ss_pred CCCEEEEEeCCCCccccCCHHHHHHHHHHHHH-----------------------------CCCcEEEecCCHHHHHHHH
Confidence 4555666666544445443 56666665533 35778887434433 3333
Q ss_pred HHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccC-CcEE-
Q 011969 334 EKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVD-KNGL- 411 (474)
Q Consensus 334 ~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~-~~G~- 411 (474)
+..+.. +++.+.|. .+-.++..+++.||++|. ..+| + .=+ |.|+|+|+|+--.+......... ....
T Consensus 228 ~i~~~~--~~~~l~g~-~sl~el~ali~~a~l~I~---~DSG---~-~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~ 296 (326)
T 2gt1_A 228 RLAEGF--AYVEVLPK-MSLEGVARVLAGAKFVVS---VDTG---L-SHL-TAALDRPNITVYGPTDPGLIGGYGKNQMV 296 (326)
T ss_dssp HHHTTC--TTEEECCC-CCHHHHHHHHHTCSEEEE---ESSH---H-HHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEE
T ss_pred HHHhhC--CcccccCC-CCHHHHHHHHHhCCEEEe---cCCc---H-HHH-HHHcCCCEEEEECCCChhhcCCCCCCceE
Confidence 333322 35777787 889999999999999998 3444 2 334 77899999987322111111111 1111
Q ss_pred E------e-C-CHHHHHHHHHHHHhC
Q 011969 412 L------F-S-SSSELADQLLMLFKG 429 (474)
Q Consensus 412 l------~-~-~~~~la~~i~~l~~~ 429 (474)
+ . + +++++.+++.++++.
T Consensus 297 ~~~~~~cm~~I~~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 297 CRAPGNELSQLTANAVKQFIEENAEK 322 (326)
T ss_dssp EECGGGCGGGCCHHHHHHHHHHTTTT
T ss_pred ecCCcccccCCCHHHHHHHHHHHHHH
Confidence 1 1 1 588888888888764
No 65
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=90.89 E-value=2.7 Score=46.83 Aligned_cols=141 Identities=14% Similarity=0.168 Sum_probs=96.0
Q ss_pred eEEEEEeecccCCCHHH-HHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCcccc-----CCCEEEEEEeCCCCh----
Q 011969 260 ALVVSSTSWTPDEDFGI-LLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYL-----YPRLLFIITGKGPDK---- 329 (474)
Q Consensus 260 ~~i~~~G~l~~~k~~~~-Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~ivG~g~~~---- 329 (474)
++.+++-|++..|...+ ++..+..+.+- ....++|.... .....+++.|+-...
T Consensus 601 Lfdvq~KR~heYKRq~LniL~ii~ry~~I----------------k~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~a 664 (879)
T 1ygp_A 601 LFDMQVKRIHEYKRQQLNVFGIIYRYLAM----------------KNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMA 664 (879)
T ss_dssp EEEEEESCCCGGGTHHHHHHHHHHHHHHH----------------HHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHH
T ss_pred eeeeeeehhhHhHHHHHHHHHHHHHHHHH----------------HhCccccCCCcccccCCCCeEEEEeccCCCCcHHH
Confidence 58899999999999998 67777665441 11111111111 134788888865322
Q ss_pred HHHHHHHHHc--------CC-C--cEEEecCCCCcccHHHHHhcccEEEeeccCC-CCCCCchHHHHHHhcCCcEEEecc
Q 011969 330 ESYEEKIRRL--------RL-K--RVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAVSY 397 (474)
Q Consensus 330 ~~~~~~~~~l--------~l-~--~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s-~~e~~p~kv~Eama~G~PVia~~~ 397 (474)
..+.+.+-.. .+ + +|.|+.- .+.+-...++..||+-..- |. .-|..|..=+=+|..|.+.|+|--
T Consensus 665 K~iIklI~~va~~iN~Dp~v~~~LKVVFlen-Y~VslAe~iipaaDvseqi--stag~EASGTsnMKfalNGaLtlgtlD 741 (879)
T 1ygp_A 665 KLIIKLINCVADIVNNDESIEHLLKVVFVAD-YNVSKAEIIIPASDLSEHI--STAGTEASGTSNMKFVMNGGLIIGTVD 741 (879)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTTSEEEEEETT-CCHHHHHHHGGGCSEEEEC--CCTTCCSCCHHHHHHHTTTCEEEEESC
T ss_pred HHHHHHHHHHHHHhccChhhCCceEEEEeCC-CCHHHHHHhhhhhhhhhhC--CCCCccccCchhhHHHHcCCeeeeccc
Confidence 2222222222 12 3 6999977 7888889999999999982 33 348899999999999999999988
Q ss_pred ccccccccc--CCcEEEeC-CHHHH
Q 011969 398 SCIEELVKV--DKNGLLFS-SSSEL 419 (474)
Q Consensus 398 ~~~~e~v~~--~~~G~l~~-~~~~l 419 (474)
|...|+.++ .+|++++. +.+++
T Consensus 742 GanvEi~e~vG~eN~fiFG~~~~ev 766 (879)
T 1ygp_A 742 GANVEITREIGEDNVFLFGNLSENV 766 (879)
T ss_dssp THHHHHHHHHCGGGSEEESCCHHHH
T ss_pred chhHHHHHHcCcccEEEccCCHHHH
Confidence 877777655 56999997 44433
No 66
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=68.90 E-value=22 Score=29.47 Aligned_cols=129 Identities=17% Similarity=0.076 Sum_probs=68.8
Q ss_pred CceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHH
Q 011969 4 RGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLK 83 (474)
Q Consensus 4 ~~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (474)
+++++|+..|.+| ...+..|.++ |++|.++....... +.....++.+.... .. . ...+
T Consensus 6 ~~~v~I~G~G~iG-----~~la~~L~~~-g~~V~~id~~~~~~--~~~~~~~~~~~~gd--~~------~-~~~l----- 63 (141)
T 3llv_A 6 RYEYIVIGSEAAG-----VGLVRELTAA-GKKVLAVDKSKEKI--ELLEDEGFDAVIAD--PT------D-ESFY----- 63 (141)
T ss_dssp CCSEEEECCSHHH-----HHHHHHHHHT-TCCEEEEESCHHHH--HHHHHTTCEEEECC--TT------C-HHHH-----
T ss_pred CCEEEEECCCHHH-----HHHHHHHHHC-CCeEEEEECCHHHH--HHHHHCCCcEEECC--CC------C-HHHH-----
Confidence 3456655544321 2345677776 99999988553221 12223466554443 11 0 1111
Q ss_pred HHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHH
Q 011969 84 PLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYY 163 (474)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 163 (474)
.+ ....+.|++++..+..-....++..++.+...+++...++..+ .+...
T Consensus 64 --~~---------~~~~~~d~vi~~~~~~~~n~~~~~~a~~~~~~~iia~~~~~~~-------------------~~~l~ 113 (141)
T 3llv_A 64 --RS---------LDLEGVSAVLITGSDDEFNLKILKALRSVSDVYAIVRVSSPKK-------------------KEEFE 113 (141)
T ss_dssp --HH---------SCCTTCSEEEECCSCHHHHHHHHHHHHHHCCCCEEEEESCGGG-------------------HHHHH
T ss_pred --Hh---------CCcccCCEEEEecCCHHHHHHHHHHHHHhCCceEEEEEcChhH-------------------HHHHH
Confidence 00 0126799998876533334445555666665566666666521 01111
Q ss_pred hhhcCEEEEeCHHHHHHHHHH
Q 011969 164 GKMANGCLCVTQAMQHELAQN 184 (474)
Q Consensus 164 ~~~ad~vi~vS~~~~~~l~~~ 184 (474)
...+|.++.........+.+.
T Consensus 114 ~~G~~~vi~p~~~~~~~l~~~ 134 (141)
T 3llv_A 114 EAGANLVVLVADAVKQAFMDK 134 (141)
T ss_dssp HTTCSEEEEHHHHHHHHHHHH
T ss_pred HcCCCEEECHHHHHHHHHHHH
Confidence 235788998888887777654
No 67
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=65.70 E-value=25 Score=29.79 Aligned_cols=66 Identities=11% Similarity=-0.069 Sum_probs=40.6
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCC-CcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRR-SAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (474)
.+.|++++..+..-....++..++.+.+ .+++...++..+. +....-.+|.++.......
T Consensus 70 ~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~~~~-------------------~~l~~~G~~~vi~p~~~~~ 130 (153)
T 1id1_A 70 DRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNL-------------------NKIKMVHPDIILSPQLFGS 130 (153)
T ss_dssp TTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGH-------------------HHHHTTCCSEEECHHHHHH
T ss_pred hhCCEEEEecCChHHHHHHHHHHHHHCCCCEEEEEECCHHHH-------------------HHHHHcCCCEEEcHHHHHH
Confidence 6899998876554445555666666644 5677767766320 1111135788887777777
Q ss_pred HHHHHH
Q 011969 179 HELAQN 184 (474)
Q Consensus 179 ~~l~~~ 184 (474)
+.+.+.
T Consensus 131 ~~l~~~ 136 (153)
T 1id1_A 131 EILARV 136 (153)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666664
No 68
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=64.90 E-value=9.9 Score=33.79 Aligned_cols=70 Identities=20% Similarity=0.240 Sum_probs=42.9
Q ss_pred HHHhcccEEEeeccCC-CCCCCchHHHHHHhcCCcEEEec--c---ccc--------cccccc-------------CCcE
Q 011969 358 LLLGSADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAVS--Y---SCI--------EELVKV-------------DKNG 410 (474)
Q Consensus 358 ~~l~~adv~v~~~~~s-~~e~~p~kv~Eama~G~PVia~~--~---~~~--------~e~v~~-------------~~~G 410 (474)
..+..||++|...... ...|...-+-=|.|.|+||++.. . +.- .|+.+. ..+|
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~D~R~~g~~~~~~~~~~~~~~e~~f~~~N~~~~G~i~~~g 144 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNEIAENQFHYLNLYTVGLIKLNG 144 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEECCCGGGCCTTCHHHHHHTTSTTCCCSCCCCHHHHHHHHTTE
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEcCcccccCCcchhhhhhHHHhhhhhhhhhHHHhhhHHhCC
Confidence 3588999999864211 11112223444789999999873 1 211 111111 1289
Q ss_pred EEeCCHHHHHHHHHHHH
Q 011969 411 LLFSSSSELADQLLMLF 427 (474)
Q Consensus 411 ~l~~~~~~la~~i~~l~ 427 (474)
.++.+.+++.++|...+
T Consensus 145 ~~~~~~~~~~~~l~~~~ 161 (162)
T 3ehd_A 145 RVVSSEEDLLEEIKQRL 161 (162)
T ss_dssp EEESSHHHHHHHHHHTC
T ss_pred eEEeCHHHHHHHHHHHh
Confidence 99999999999988764
No 69
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=62.96 E-value=47 Score=29.07 Aligned_cols=70 Identities=16% Similarity=0.234 Sum_probs=39.3
Q ss_pred HHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccc----ccccccccCCc--EEE---eCCHHHHHHHHHHHHh
Q 011969 358 LLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIEELVKVDKN--GLL---FSSSSELADQLLMLFK 428 (474)
Q Consensus 358 ~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~----~~~e~v~~~~~--G~l---~~~~~~la~~i~~l~~ 428 (474)
..++.||++|...+ ....|.+.-+-=|.+.|+||++-..+ ..+-++....+ -+. +.+ +++.+.|.+.++
T Consensus 64 ~~i~~aD~vvA~l~-~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~~~~~~~~~~Y~~-~el~~il~~f~~ 141 (152)
T 4fyk_A 64 NWLQQADVVVAEVT-QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAE-GEVETMLDRYFE 141 (152)
T ss_dssp HHHHHCSEEEEECS-SCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHCCSSSEEEEECCT-TCHHHHHHHHHC
T ss_pred HHHHHCCEEEEeCC-CCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCCCCCeEEEEEecH-HHHHHHHHHHHH
Confidence 45889999999533 22222333444578999999994322 22222222111 122 235 778888888776
Q ss_pred C
Q 011969 429 G 429 (474)
Q Consensus 429 ~ 429 (474)
.
T Consensus 142 ~ 142 (152)
T 4fyk_A 142 A 142 (152)
T ss_dssp -
T ss_pred h
Confidence 4
No 70
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=59.91 E-value=42 Score=27.96 Aligned_cols=127 Identities=11% Similarity=0.056 Sum_probs=70.1
Q ss_pred ceEEEEEeCCCCCCchHHH-HHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHH
Q 011969 5 GRACVVVLGDLGRSPRMQY-QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLK 83 (474)
Q Consensus 5 ~~~~i~~~~~~g~~~r~~~-~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (474)
+.++|+..| ++.. .+..|.+. |++|.++..+.... +.....|+.+..-. .. . ...+
T Consensus 8 ~~viIiG~G------~~G~~la~~L~~~-g~~v~vid~~~~~~--~~~~~~g~~~i~gd--~~------~-~~~l----- 64 (140)
T 3fwz_A 8 NHALLVGYG------RVGSLLGEKLLAS-DIPLVVIETSRTRV--DELRERGVRAVLGN--AA------N-EEIM----- 64 (140)
T ss_dssp SCEEEECCS------HHHHHHHHHHHHT-TCCEEEEESCHHHH--HHHHHTTCEEEESC--TT------S-HHHH-----
T ss_pred CCEEEECcC------HHHHHHHHHHHHC-CCCEEEEECCHHHH--HHHHHcCCCEEECC--CC------C-HHHH-----
Confidence 345555554 3433 35666665 99999998664321 12223567665443 11 0 0111
Q ss_pred HHHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhC-CCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHH
Q 011969 84 PLIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLR-RSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKY 162 (474)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~ 162 (474)
.+ ....+.|++++..+.......++..++.+. ..++|.-.++..+ .+..
T Consensus 65 --~~---------a~i~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~~~~~~-------------------~~~l 114 (140)
T 3fwz_A 65 --QL---------AHLECAKWLILTIPNGYEAGEIVASARAKNPDIEIIARAHYDDE-------------------VAYI 114 (140)
T ss_dssp --HH---------TTGGGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEESSHHH-------------------HHHH
T ss_pred --Hh---------cCcccCCEEEEECCChHHHHHHHHHHHHHCCCCeEEEEECCHHH-------------------HHHH
Confidence 00 012679999887765444444555566654 4666666665521 1112
Q ss_pred HhhhcCEEEEeCHHHHHHHHHH
Q 011969 163 YGKMANGCLCVTQAMQHELAQN 184 (474)
Q Consensus 163 ~~~~ad~vi~vS~~~~~~l~~~ 184 (474)
..-.+|.++.....+...+.+.
T Consensus 115 ~~~G~d~vi~p~~~~a~~i~~~ 136 (140)
T 3fwz_A 115 TERGANQVVMGEREIARTMLEL 136 (140)
T ss_dssp HHTTCSEEEEHHHHHHHHHHHH
T ss_pred HHCCCCEEECchHHHHHHHHHH
Confidence 2236899999888888777654
No 71
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=59.50 E-value=86 Score=30.83 Aligned_cols=166 Identities=15% Similarity=0.027 Sum_probs=89.0
Q ss_pred CCChhHHHHHHHHHhhCCCcEEE-EecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeC--HHHHHHHHHHhC
Q 011969 110 PPSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVT--QAMQHELAQNWG 186 (474)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~-~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS--~~~~~~l~~~~~ 186 (474)
-|+.-|-...-.+.+..|..+++ +..+. +.++.-.+. -.-+.+.+++|.++.=+ +...+.+.+.-+
T Consensus 57 e~STRTR~SFE~A~~~LGg~~i~l~~~~s-------s~~kgEsl~----DTarvLs~~~D~iviR~~~~~~~~~lA~~~~ 125 (323)
T 3gd5_A 57 KASTRTRVSFTVAMYQLGGQVIDLSPSNT-------QVGRGEPVR----DTARVLGRYVDGLAIRTFAQTELEEYAHYAG 125 (323)
T ss_dssp SCCHHHHHHHHHHHHHTTCEEEEC-----------------CCHH----HHHHHHTTTCSEEEEECSSHHHHHHHHHHHC
T ss_pred CCCcchHhhHHHHHHHcCCeEEEeCcccc-------cCCCCCCHH----HHHHHHHHhCCEEEEecCChhHHHHHHHhCC
Confidence 34555655555555556655444 22221 234444333 23445667899988544 455667777656
Q ss_pred CceEEEeCCCCCCCCCCC-hHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEE
Q 011969 187 IKATVLYDQPPEFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSS 265 (474)
Q Consensus 187 ~~~~vi~n~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 265 (474)
++ | .|+.+..+||+. .-+-..+++.+|. -+ -+.+.|+
T Consensus 126 vP--V-INag~~~~HPtQaLaDl~Ti~e~~g~--------------------------------------l~-glkva~v 163 (323)
T 3gd5_A 126 IP--V-INALTDHEHPCQVVADLLTIRENFGR--------------------------------------LA-GLKLAYV 163 (323)
T ss_dssp SC--E-EEEECSSCCHHHHHHHHHHHHHHHSC--------------------------------------CT-TCEEEEE
T ss_pred CC--E-EeCCCCCCCcHHHHHHHHHHHHHhCC--------------------------------------CC-CCEEEEE
Confidence 55 3 454446788873 2233445555551 11 1278899
Q ss_pred eecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHHH----HHHHc
Q 011969 266 TSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEE----KIRRL 339 (474)
Q Consensus 266 G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~~----~~~~l 339 (474)
|-+ ..=..-++.++..+ ++++.++|.... .+.+.+ .+++.
T Consensus 164 GD~--~rva~Sl~~~~~~~--------------------------------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~ 209 (323)
T 3gd5_A 164 GDG--NNVAHSLLLGCAKV--------------------------------GMSIAVATPEGFTPDPAVSARASEIAGRT 209 (323)
T ss_dssp SCC--CHHHHHHHHHHHHH--------------------------------TCEEEEECCTTCCCCHHHHHHHHHHHHHH
T ss_pred CCC--CcHHHHHHHHHHHc--------------------------------CCEEEEECCCcccCCHHHHHHHHHHHHHc
Confidence 987 22234455555443 478999985422 133333 33344
Q ss_pred CCCcEEEecCCCCcccHHHHHhcccEEEee
Q 011969 340 RLKRVAFRTMWLSAEDYPLLLGSADLGVCL 369 (474)
Q Consensus 340 ~l~~V~f~g~~v~~~~~~~~l~~adv~v~~ 369 (474)
|. .|.+. .++.+.+..||++...
T Consensus 210 g~-~v~~~------~d~~eav~~aDvvyt~ 232 (323)
T 3gd5_A 210 GA-EVQIL------RDPFEAARGAHILYTD 232 (323)
T ss_dssp TC-CEEEE------SCHHHHHTTCSEEEEC
T ss_pred CC-eEEEE------CCHHHHhcCCCEEEEe
Confidence 52 44443 5778889999999984
No 72
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=59.41 E-value=35 Score=28.03 Aligned_cols=63 Identities=17% Similarity=0.137 Sum_probs=45.9
Q ss_pred CCCEEEEEEeCCC--ChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcE
Q 011969 315 YPRLLFIITGKGP--DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPV 392 (474)
Q Consensus 315 ~~~~~l~ivG~g~--~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PV 392 (474)
..+..++|+|.-+ .++++++.++.+|. .+.+. |+ ...|++|+ .. .. -+.|+-.|...|+||
T Consensus 33 l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg---~v~~s-VS--------kkTd~LV~---G~-~~-g~sK~~kA~~lgI~I 95 (109)
T 2k6g_A 33 LEGLIFVITGVLESIERDEAKSLIERYGG---KVTGN-VS--------KKTNYLVM---GR-DS-GQSKSDKAAALGTKI 95 (109)
T ss_dssp TTTCEEEEESBCSSCCHHHHHHHHHHTTC---EEESS-CC--------TTCCEEEE---CB-CC-CHHHHHHHHHHTCEE
T ss_pred CCCCEEEEeeeCCCCCHHHHHHHHHHcCC---EeeCc-cc--------CCceEEEE---CC-CC-ChHHHHHHHHcCCeE
Confidence 4678999999753 57889999999983 23444 33 56788887 22 11 147999999999999
Q ss_pred EE
Q 011969 393 CA 394 (474)
Q Consensus 393 ia 394 (474)
|.
T Consensus 96 i~ 97 (109)
T 2k6g_A 96 ID 97 (109)
T ss_dssp EC
T ss_pred Ee
Confidence 86
No 73
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=52.43 E-value=1.1e+02 Score=30.54 Aligned_cols=177 Identities=12% Similarity=0.080 Sum_probs=93.6
Q ss_pred CCChhHHHHHHHHHhhCCCcEEE-EecCchhhhhhhcc------CCCchHHHHHHHHHHHHhhhcCEEEEeCH-------
Q 011969 110 PPSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLSL------GRRSHFVSIYRWIEKYYGKMANGCLCVTQ------- 175 (474)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~-~~h~~~~~~~~~~~------~~~~~~~~~~~~~e~~~~~~ad~vi~vS~------- 175 (474)
-|+.-|-.....+....|..+++ +.....+. ...+. ++.-.+.-. -+.+.+++|.+++=+.
T Consensus 67 epSTRTR~SFE~A~~~LGg~~i~l~~~~~ss~-~~s~~~~vm~~~kgEsl~DT----arvLs~y~D~IviR~~~~~~~~~ 141 (359)
T 1zq6_A 67 NPSMRTRTSFELGAFQLGGHAVVLQPGKDAWP-IEFNLGTVMDGDTEEHIAEV----ARVLGRYVDLIGVRAFPKFVDWS 141 (359)
T ss_dssp SCCHHHHHHHHHHHHHTTCEEEEECHHHHSCC-EECSSSCCCCSSCCEEHHHH----HHHHHHHCSEEEEECCCCSSCHH
T ss_pred CCCcchhhhHHHHHHHcCCeEEEeCCCccccc-ccccccccccCCCCCcHHHH----HHHHHHhCcEEEEeccccccccc
Confidence 34566665555566656655544 22200000 00123 444444433 3345566898877655
Q ss_pred -----HHHHHHHHHhCCceEEEeCCCCCCCCCCC-hHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccc
Q 011969 176 -----AMQHELAQNWGIKATVLYDQPPEFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAG 249 (474)
Q Consensus 176 -----~~~~~l~~~~~~~~~vi~n~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (474)
...+.+.+.-+++ +.|+.+.. ||+. .-+-..+++.+|.. .
T Consensus 142 ~~~~~~~~~~lA~~~~vP---VINag~g~-HPtQaLaDl~TI~E~~g~~---------------------------~--- 187 (359)
T 1zq6_A 142 KDREDQVLKSFAKYSPVP---VINMETIT-HPCQELAHALALQEHFGTP---------------------------D--- 187 (359)
T ss_dssp HHTTCHHHHHHHHHCSSC---EEESSSSC-CHHHHHHHHHHHHHHHTSS---------------------------C---
T ss_pred cccchHHHHHHHHhCCCC---EEeCCCCC-CcHHHHHHHHHHHHHhCCC---------------------------c---
Confidence 4555676654444 34554444 8873 22334455555510 0
Q ss_pred cccccCCCCCeEEEEEeecccC--CCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCC-
Q 011969 250 IDVFLKPNRPALVVSSTSWTPD--EDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKG- 326 (474)
Q Consensus 250 ~~~~~~~~~~~~i~~~G~l~~~--k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g- 326 (474)
+ .+..+++.|+|-+... .=..-++.++..+ ++++.+++..
T Consensus 188 ----l-~glkvvva~vGDl~~~~nrva~Sl~~~~~~~--------------------------------G~~v~~~~P~~ 230 (359)
T 1zq6_A 188 ----L-RGKKYVLTWTYHPKPLNTAVANSALTIATRM--------------------------------GMDVTLLCPTP 230 (359)
T ss_dssp ----C-TTCEEEEEECCCSSCCCSHHHHHHHHHHHHT--------------------------------TCEEEEECSSG
T ss_pred ----c-cCCeeEEEEEecccccccchHHHHHHHHHHc--------------------------------CCEEEEEcCcc
Confidence 0 1222238899987654 4455666666654 4789999854
Q ss_pred CC--hHHHHH----HHHHcCCCcEEEecCCCCcccHHHHHhcccEEEee
Q 011969 327 PD--KESYEE----KIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCL 369 (474)
Q Consensus 327 ~~--~~~~~~----~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~ 369 (474)
.. .+++.+ .+++.|. .+.+. .++.+.+..||++...
T Consensus 231 ~~~~~~~~~~~~~~~a~~~g~-~v~~~------~d~~eav~~aDvVyt~ 272 (359)
T 1zq6_A 231 DYILDERYMDWAAQNVAESGG-SLQVS------HDIDSAYAGADVVYAK 272 (359)
T ss_dssp GGCCCHHHHHHHHHHHHHHSC-EEEEE------CCHHHHHTTCSEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHcCC-eEEEE------CCHHHHhcCCCEEEEC
Confidence 11 123333 3345552 44443 5678889999999884
No 74
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=50.75 E-value=93 Score=24.78 Aligned_cols=107 Identities=12% Similarity=0.026 Sum_probs=66.8
Q ss_pred CEEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHhc-----
Q 011969 317 RLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGC----- 388 (474)
Q Consensus 317 ~~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama~----- 388 (474)
..+++|+.+.+. ...+.+..++.|.. |.... +.++....+.. .|++++= ......-|..+++.+..
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~-v~~~~---~~~~a~~~l~~~~~dlvi~d--~~l~~~~g~~~~~~l~~~~~~~ 79 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFD-SDMVH---SAAQALEQVARRPYAAMTVD--LNLPDQDGVSLIRALRRDSRTR 79 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCE-EEEEC---SHHHHHHHHHHSCCSEEEEC--SCCSSSCHHHHHHHHHTSGGGT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCe-EEEEC---CHHHHHHHHHhCCCCEEEEe--CCCCCCCHHHHHHHHHhCcccC
Confidence 357788876543 35566667776653 44433 35666666544 5788772 11223346677777654
Q ss_pred CCcEEEecccc----cc-cccccCCcEEEeC--CHHHHHHHHHHHHhC
Q 011969 389 GLPVCAVSYSC----IE-ELVKVDKNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 389 G~PVia~~~~~----~~-e~v~~~~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
.+|||...... .. +....+..+++.. +.++|..+|..+++.
T Consensus 80 ~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 80 DLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp TCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 78888764322 22 4555677888875 699999999998874
No 75
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=48.27 E-value=1.5e+02 Score=28.76 Aligned_cols=168 Identities=14% Similarity=0.047 Sum_probs=91.1
Q ss_pred CCCChhHHHHHHHHHhhCCCcEEE-EecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEE--eCHHHHHHHHHHh
Q 011969 109 NPPSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLC--VTQAMQHELAQNW 185 (474)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~-~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~--vS~~~~~~l~~~~ 185 (474)
.-|+.-|-...-.+.+..|..+++ +..+. +.++.-.+.-. -+.+.+++|.++. ..+...+.+.+.-
T Consensus 44 ~e~STRTR~SFe~A~~~LGg~~i~l~~~~s-------s~~kgEsl~DT----arvls~~~D~iviR~~~~~~~~~lA~~~ 112 (307)
T 3tpf_A 44 EKNSTRTRMAFELAITELGGKALFLSSNDL-------QLSRGEPVKDT----ARVIGAMVDFVMMRVNKHETLLEFARYS 112 (307)
T ss_dssp SSCCHHHHHHHHHHHHHTTCEEEEECTTTC-------CTTTSSCHHHH----HHHHHHHSSEEEEECSCHHHHHHHHHHC
T ss_pred cCCCcchHHhHHHHHHHcCCeEEEcCcccc-------cCCCCCCHHHH----HHHHHHhCCEEEEecCChHHHHHHHHhC
Confidence 334555655555555555655444 22222 34555555433 3344556898887 4456666777755
Q ss_pred CCceEEEeCCCCCCCCCCC-hHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEE
Q 011969 186 GIKATVLYDQPPEFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVS 264 (474)
Q Consensus 186 ~~~~~vi~n~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 264 (474)
+++ +.|+.+..+||+. .-+-..+++.+|. +.++ +.+.|
T Consensus 113 ~vP---VINag~~~~HPtQaLaDl~Ti~e~~g~------------------------------------l~~g--l~va~ 151 (307)
T 3tpf_A 113 KAP---VINALSELYHPTQVLGDLFTIKEWNKM------------------------------------QNGI--AKVAF 151 (307)
T ss_dssp SSC---EEEEECSSCCHHHHHHHHHHHHHTTCC------------------------------------GGGC--CEEEE
T ss_pred CCC---EEeCCCCCcCcHHHHHHHHHHHHHhCC------------------------------------CCCC--CEEEE
Confidence 554 3354345788873 2233344455441 1111 27889
Q ss_pred EeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHHH----HHHH
Q 011969 265 STSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEE----KIRR 338 (474)
Q Consensus 265 ~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~~----~~~~ 338 (474)
+|-. ..=..-++.++..+ ++++.++|.... .+++.+ .+++
T Consensus 152 vGD~--~~va~Sl~~~~~~~--------------------------------G~~v~~~~P~~~~~~~~~~~~~~~~a~~ 197 (307)
T 3tpf_A 152 IGDS--NNMCNSWLITAAIL--------------------------------GFEISIAMPKNYKISPEIWEFAMKQALI 197 (307)
T ss_dssp ESCS--SHHHHHHHHHHHHH--------------------------------TCEEEEECCTTCCCCHHHHHHHHHHHHH
T ss_pred EcCC--CccHHHHHHHHHHc--------------------------------CCEEEEECCCccCCCHHHHHHHHHHHHH
Confidence 9873 22233445555443 478999985422 123333 3335
Q ss_pred cCCCcEEEecCCCCcccHHHHHhcccEEEee
Q 011969 339 LRLKRVAFRTMWLSAEDYPLLLGSADLGVCL 369 (474)
Q Consensus 339 l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~ 369 (474)
.|. .+... .++.+.+..||++...
T Consensus 198 ~g~-~~~~~------~d~~eav~~aDvvyt~ 221 (307)
T 3tpf_A 198 SGA-KISLG------YDKFEALKDKDVVITD 221 (307)
T ss_dssp HTC-EEEEE------SCHHHHHTTCSEEEEC
T ss_pred cCC-eEEEE------cCHHHHhcCCCEEEec
Confidence 552 44443 5678889999999983
No 76
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.21 E-value=60 Score=26.80 Aligned_cols=73 Identities=19% Similarity=0.171 Sum_probs=49.6
Q ss_pred hhcCCccccCCCEEEEEEeCCC--ChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHH
Q 011969 306 EISDGKQYLYPRLLFIITGKGP--DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVV 383 (474)
Q Consensus 306 ~~~~~~~~~~~~~~l~ivG~g~--~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~ 383 (474)
++-.+......+..|+|.|.-+ .+++++++++.+|. .+.+. |+ +..|++|+ .. .. -+.|+-
T Consensus 14 ~~P~~~~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg---kv~~s-VS--------kkTd~LV~---G~-~~-g~sKl~ 76 (112)
T 2ebu_A 14 EIPKGAENCLEGLIFVITGVLESIERDEAKSLIERYGG---KVTGN-VS--------KKTNYLVM---GR-DS-GQSKSD 76 (112)
T ss_dssp CCCCCCSSSSTTCEEEECSCCSSSCHHHHHHHHHHTTC---EECSS-CC--------SSCCEEEE---CS-SC-CSHHHH
T ss_pred cCCCCCCCCcCCCEEEEeeeCCCCCHHHHHHHHHHcCC---EEecc-cc--------CCeeEEEe---cC-CC-ChHHHH
Confidence 3333433335678999999753 57889999999983 23333 32 56788887 22 11 247999
Q ss_pred HHHhcCCcEEEe
Q 011969 384 DMFGCGLPVCAV 395 (474)
Q Consensus 384 Eama~G~PVia~ 395 (474)
.|...|+|||.-
T Consensus 77 KA~~lgI~IisE 88 (112)
T 2ebu_A 77 KAAALGTKIIDE 88 (112)
T ss_dssp HHHHHTCEEEEH
T ss_pred HHHHcCCeEEeH
Confidence 999999999974
No 77
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=48.17 E-value=1.9e+02 Score=28.62 Aligned_cols=166 Identities=15% Similarity=0.085 Sum_probs=88.4
Q ss_pred CCChhHHHHHHHHHhhCCCcEEE-EecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCH--HHHHHHHHHhC
Q 011969 110 PPSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQ--AMQHELAQNWG 186 (474)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~-~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~--~~~~~l~~~~~ 186 (474)
-|+.-|-...-.+.+..|..+++ +..+. +.++.-.+.-. -+.+.+++|.++.=.. ...+.+.+.-+
T Consensus 79 epSTRTR~SFE~A~~~LGg~vi~l~~~~s-------s~~kgEsl~DT----arvLs~y~D~IviR~~~~~~~~~lA~~~~ 147 (340)
T 4ep1_A 79 KHSTRTRVSFEAGMVQLGGHGMFLNGKEM-------QMGRGETVSDT----AKVLSHYIDGIMIRTFSHADVEELAKESS 147 (340)
T ss_dssp SCCHHHHHHHHHHHHHTTCEEEEEESCC-------------CCTTHH----HHHHHHHCSEEEEECSCHHHHHHHHHHCS
T ss_pred CCCccHHHHHHHHHHHcCCeEEEcCcccc-------cCCCCCCHHHH----HHHHHHhCCEEEEecCChhHHHHHHHhCC
Confidence 34556655555555555655444 33322 23333333222 2344556898777654 55566777545
Q ss_pred CceEEEeCCCCCCCCCCC-hHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEE
Q 011969 187 IKATVLYDQPPEFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSS 265 (474)
Q Consensus 187 ~~~~vi~n~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 265 (474)
++ | .|+.+..+||+. .-+-..+++.+|. - .-+.+.|+
T Consensus 148 vP--V-INag~~~~HPtQaLaDl~TI~E~~G~--------------------------------------l-~glkva~v 185 (340)
T 4ep1_A 148 IP--V-INGLTDDHHPCQALADLMTIYEETNT--------------------------------------F-KGIKLAYV 185 (340)
T ss_dssp SC--E-EEEECSSCCHHHHHHHHHHHHHHHSC--------------------------------------C-TTCEEEEE
T ss_pred CC--E-EeCCCCCCCcHHHHHHHHHHHHHhCC--------------------------------------C-CCCEEEEE
Confidence 54 3 344345788873 2233445555551 1 11278889
Q ss_pred eecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHHH----HHHHc
Q 011969 266 TSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEE----KIRRL 339 (474)
Q Consensus 266 G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~~----~~~~l 339 (474)
|-+ ..=..-++.++..+ ++++.++|.... .+++.+ .+++.
T Consensus 186 GD~--~nva~Sl~~~~~~~--------------------------------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~ 231 (340)
T 4ep1_A 186 GDG--NNVCHSLLLASAKV--------------------------------GMHMTVATPVGYRPNEEIVKKALAIAKET 231 (340)
T ss_dssp SCC--CHHHHHHHHHHHHH--------------------------------TCEEEEECCTTCCCCHHHHHHHHHHHHHH
T ss_pred CCC--chhHHHHHHHHHHc--------------------------------CCEEEEECCcccCCCHHHHHHHHHHHHHc
Confidence 876 22234455555543 478999985422 133333 33455
Q ss_pred CCCcEEEecCCCCcccHHHHHhcccEEEee
Q 011969 340 RLKRVAFRTMWLSAEDYPLLLGSADLGVCL 369 (474)
Q Consensus 340 ~l~~V~f~g~~v~~~~~~~~l~~adv~v~~ 369 (474)
|. .|.+. .++.+.+..||++...
T Consensus 232 G~-~v~~~------~d~~eav~~aDVvyt~ 254 (340)
T 4ep1_A 232 GA-EIEIL------HNPELAVNEADFIYTD 254 (340)
T ss_dssp CC-CEEEE------SCHHHHHTTCSEEEEC
T ss_pred CC-eEEEE------CCHHHHhCCCCEEEec
Confidence 52 44443 5678889999999983
No 78
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=47.91 E-value=72 Score=26.04 Aligned_cols=108 Identities=12% Similarity=0.070 Sum_probs=64.7
Q ss_pred CEEEEEEeCCCC-hHHHHHHHHHc-CCCcEEEecCCCCcccHHHHHhc---ccEEEeeccCCCCCCCchHHHHHHh---c
Q 011969 317 RLLFIITGKGPD-KESYEEKIRRL-RLKRVAFRTMWLSAEDYPLLLGS---ADLGVCLHTSSSGLDLPMKVVDMFG---C 388 (474)
Q Consensus 317 ~~~l~ivG~g~~-~~~~~~~~~~l-~l~~V~f~g~~v~~~~~~~~l~~---adv~v~~~~~s~~e~~p~kv~Eama---~ 388 (474)
..+++|+.+.+. ...+.+..++. +...|.... +.++....+.. .|++++=.. ....-|..+++.+. .
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~---~~~~a~~~l~~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~ 77 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAE---TVSDALAFLEADNTVDLILLDVN--LPDAEAIDGLVRLKRFDP 77 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEES---SHHHHHHHHHTTCCCSEEEECC--------CHHHHHHHHHHCT
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEec---CHHHHHHHHhccCCCCEEEEeCC--CCCCchHHHHHHHHHhCC
Confidence 367888886543 35566666666 543455443 36777777765 688887211 11123445555554 4
Q ss_pred CCcEEEeccc----ccccccccCCcEEEeC--CHHHHHHHHHHHHhC
Q 011969 389 GLPVCAVSYS----CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 389 G~PVia~~~~----~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
++|||..... ...+.+..+..|++.. +.++|.+.|..++..
T Consensus 78 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 78 SNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp TSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 7888875422 2334455667788775 689999999999875
No 79
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=46.91 E-value=15 Score=33.55 Aligned_cols=70 Identities=13% Similarity=0.130 Sum_probs=42.8
Q ss_pred ccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecc-cccccc----cccC-------CcEE-EeCCHHHHH
Q 011969 354 EDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSY-SCIEEL----VKVD-------KNGL-LFSSSSELA 420 (474)
Q Consensus 354 ~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~-~~~~e~----v~~~-------~~G~-l~~~~~~la 420 (474)
+--..+...||++|.. +. +.|-=..++|++..|+||++.+. +...+. +.++ ...+ +++|++++.
T Consensus 110 ~Rk~~m~~~sda~Ivl--pG-G~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~ 186 (195)
T 1rcu_A 110 MRSFVLLRNADVVVSI--GG-EIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAV 186 (195)
T ss_dssp HHHHHHHTTCSEEEEE--SC-CHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHH
T ss_pred HHHHHHHHhCCEEEEe--cC-CCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHH
Confidence 3445566789999985 32 21122378899999999999964 322222 2221 1123 346899988
Q ss_pred HHHHHH
Q 011969 421 DQLLML 426 (474)
Q Consensus 421 ~~i~~l 426 (474)
+.|..+
T Consensus 187 ~~l~~~ 192 (195)
T 1rcu_A 187 QIIEQI 192 (195)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 887654
No 80
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=46.02 E-value=36 Score=32.72 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=54.3
Q ss_pred ceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHHHHHH
Q 011969 5 GRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLLLLKP 84 (474)
Q Consensus 5 ~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (474)
++++|+..|.+|. ..+..|++. |++|++++... . +.....|+.+..... ........ ...... .
T Consensus 3 mkI~IiGaGaiG~-----~~a~~L~~~-g~~V~~~~r~~---~-~~i~~~g~~~~~~~g-~~~~~~~~-~~~~~~----~ 66 (312)
T 3hn2_A 3 LRIAIVGAGALGL-----YYGALLQRS-GEDVHFLLRRD---Y-EAIAGNGLKVFSING-DFTLPHVK-GYRAPE----E 66 (312)
T ss_dssp -CEEEECCSTTHH-----HHHHHHHHT-SCCEEEECSTT---H-HHHHHTCEEEEETTC-CEEESCCC-EESCHH----H
T ss_pred CEEEEECcCHHHH-----HHHHHHHHC-CCeEEEEEcCc---H-HHHHhCCCEEEcCCC-eEEEeece-eecCHH----H
Confidence 3588888888763 346678886 99999998643 1 333445666654210 00000000 000000 0
Q ss_pred HHHHHHHHHHHhhhcCCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCc
Q 011969 85 LIQFFMLLWFLCVKIASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNF 137 (474)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~ 137 (474)
...+|+|++..++.....++..+...+..-..|+.+++-
T Consensus 67 --------------~~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~l~nG 105 (312)
T 3hn2_A 67 --------------IGPMDLVLVGLKTFANSRYEELIRPLVEEGTQILTLQNG 105 (312)
T ss_dssp --------------HCCCSEEEECCCGGGGGGHHHHHGGGCCTTCEEEECCSS
T ss_pred --------------cCCCCEEEEecCCCCcHHHHHHHHhhcCCCCEEEEecCC
Confidence 167999999877554333333333334434567777765
No 81
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=45.26 E-value=1.2e+02 Score=24.37 Aligned_cols=108 Identities=9% Similarity=0.020 Sum_probs=68.2
Q ss_pred CCEEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHhc----
Q 011969 316 PRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGC---- 388 (474)
Q Consensus 316 ~~~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama~---- 388 (474)
...+++|+.+.+. .+.+.+..+..|. .|.... +.++....+.. .|++++=. .....-|..+++.+..
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~-~v~~~~---~~~~a~~~l~~~~~dlii~d~--~l~~~~g~~~~~~l~~~~~~ 80 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGF-DIIQCG---NAIEAVPVAVKTHPHLIITEA--NMPKISGMDLFNSLKKNPQT 80 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTE-EEEEES---SHHHHHHHHHHHCCSEEEEES--CCSSSCHHHHHHHHHTSTTT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCC-eEEEeC---CHHHHHHHHHcCCCCEEEEcC--CCCCCCHHHHHHHHHcCccc
Confidence 4578888887654 3566667777664 344332 35666666554 68888731 1222345677777654
Q ss_pred -CCcEEEecc-cc---cccccccCCcEEEeC--CHHHHHHHHHHHHhC
Q 011969 389 -GLPVCAVSY-SC---IEELVKVDKNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 389 -G~PVia~~~-~~---~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
++|||.... .. ..+.+..+..+++.. +.++|...|..++..
T Consensus 81 ~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 81 ASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKL 128 (147)
T ss_dssp TTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 688887542 22 233455677888885 689999999988763
No 82
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=44.99 E-value=1.1e+02 Score=29.76 Aligned_cols=168 Identities=10% Similarity=0.051 Sum_probs=94.3
Q ss_pred CCChhHHHHHHHHHhhCCCcEEEE-e-cCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCH--HHHHHHHHHh
Q 011969 110 PPSVPTLVAVKWASSLRRSAFIVD-W-HNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQ--AMQHELAQNW 185 (474)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~-~-h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~--~~~~~l~~~~ 185 (474)
-|+.-|-...-.+....|..+++- . .+. +.++.-.+.-.. +.+.+++|.+++=+. ...+.+.+.-
T Consensus 49 e~STRTR~SFe~A~~~LGg~~i~l~~~~~s-------s~~kgEsl~DTa----rvls~~~D~iviR~~~~~~~~~lA~~~ 117 (306)
T 4ekn_B 49 EPSTRTRLSFETAMKRLGGEVITMTDLKSS-------SVAKGESLIDTI----RVISGYADIIVLRHPSEGAARLASEYS 117 (306)
T ss_dssp SCCHHHHHHHHHHHHHTTCEEEEECCCTTT-------TSSSSCCHHHHH----HHHHHHCSEEEEECSSTTHHHHHHHHC
T ss_pred CCChhHHhhHHHHHHHcCCEEEEcCCcccc-------cCCCCCCHHHHH----HHHHHhCcEEEEEcCChHHHHHHHHhC
Confidence 345556555555555556554442 2 222 345555554333 344556798777544 5556676654
Q ss_pred CCceEEEeCC-CCCCCCCCC-hHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEE
Q 011969 186 GIKATVLYDQ-PPEFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVV 263 (474)
Q Consensus 186 ~~~~~vi~n~-~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 263 (474)
+++ | .|+ ....+||+. .-+-..+++.+|. -+. +.+.
T Consensus 118 ~vP--V-INag~g~~~HPtQ~LaDl~Ti~e~~g~--------------------------------------l~g-lkva 155 (306)
T 4ekn_B 118 QVP--I-INAGDGSNQHPTQTLLDLYTIMREIGR--------------------------------------IDG-IKIA 155 (306)
T ss_dssp SSC--E-EESCSSSSCCHHHHHHHHHHHHHHHSC--------------------------------------STT-CEEE
T ss_pred CCC--E-EeCCCCCCcCcHHHHHHHHHHHHHhCC--------------------------------------cCC-CEEE
Confidence 443 3 455 446788873 2233445555551 111 2788
Q ss_pred EEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHHHHHHHcCC
Q 011969 264 SSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEKIRRLRL 341 (474)
Q Consensus 264 ~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~~~~~~l~l 341 (474)
|+|-+....=..-++.++.. .+++++.+++.... .+++.+.+++.|.
T Consensus 156 ~vGD~~~~rva~Sl~~~~~~-------------------------------~~G~~v~~~~P~~~~~~~~~~~~~~~~g~ 204 (306)
T 4ekn_B 156 FVGDLKYGRTVHSLVYALSL-------------------------------FENVEMYFVSPKELRLPKDIIEDLKAKNI 204 (306)
T ss_dssp EESCTTTCHHHHHHHHHHHT-------------------------------SSSCEEEEECCGGGCCCHHHHHHHHHTTC
T ss_pred EEcCCCCCcHHHHHHHHHHh-------------------------------cCCCEEEEECCcccccCHHHHHHHHHcCC
Confidence 99976544334455555554 34689999985321 2456666676653
Q ss_pred CcEEEecCCCCcccHHHHHhcccEEEe
Q 011969 342 KRVAFRTMWLSAEDYPLLLGSADLGVC 368 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~~~l~~adv~v~ 368 (474)
.|... .++.+.+..||++..
T Consensus 205 -~~~~~------~d~~eav~~aDvvy~ 224 (306)
T 4ekn_B 205 -KFYEK------ESLDDLDDDIDVLYV 224 (306)
T ss_dssp -CEEEE------SCGGGCCTTCSEEEE
T ss_pred -EEEEE------cCHHHHhcCCCEEEe
Confidence 34333 455667889999987
No 83
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=44.97 E-value=41 Score=30.85 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=30.8
Q ss_pred CCceEEEEEeCCCCCCchHHHHHHHHHhh-CCCeEEEEecC-CCCCCcceeccCCeEEEEee
Q 011969 3 RRGRACVVVLGDLGRSPRMQYQALSLARQ-MSLEVDVVAYG-GSKPHAAILEHPSIHIHTMT 62 (474)
Q Consensus 3 ~~~~~~i~~~~~~g~~~r~~~~a~~l~~~-~g~eV~Vv~~~-~~~~~~~~~~~~gi~i~~~~ 62 (474)
+|+++.|++.|. | .-.......+.+. .+++|..|... ...+..+.....||.++.++
T Consensus 2 ~m~ki~vl~sG~-g--~~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~~A~~~gIp~~~~~ 60 (212)
T 3av3_A 2 HMKRLAVFASGS-G--TNFQAIVDAAKRGDLPARVALLVCDRPGAKVIERAARENVPAFVFS 60 (212)
T ss_dssp CCEEEEEECCSS-C--HHHHHHHHHHHTTCCCEEEEEEEESSTTCHHHHHHHHTTCCEEECC
T ss_pred CCcEEEEEEECC-c--HHHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHHHHHHcCCCEEEeC
Confidence 456788887775 1 1222333444443 15777655443 22222234556799888776
No 84
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=44.89 E-value=1.8e+02 Score=28.52 Aligned_cols=92 Identities=17% Similarity=0.216 Sum_probs=50.1
Q ss_pred CChhHHHHHHHHHhhCCCcEEE-EecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEE--eCHHHHHHHHHHhCC
Q 011969 111 PSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLC--VTQAMQHELAQNWGI 187 (474)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~-~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~--vS~~~~~~l~~~~~~ 187 (474)
|+.-|-...-.+.+..|..+++ +..+. +.++.-.+.-.. +.+.+++|.+++ ..+...+++.+..++
T Consensus 56 ~STRTR~SFe~A~~~LGg~~i~l~~~~s-------s~~kgEsl~DTa----rvls~~~D~iviR~~~~~~~~~lA~~~~v 124 (321)
T 1oth_A 56 RSTRTRLSTETGFALLGGHPCFLTTQDI-------HLGVNESLTDTA----RVLSSMADAVLARVYKQSDLDTLAKEASI 124 (321)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEETTTS-------CBTTTBCHHHHH----HHHHHHCSEEEEECSCHHHHHHHHHHCSS
T ss_pred CCcchHHHHHHHHHHcCCeEEEECCCcC-------cCCCCCCHHHHH----HHHHHhCCEEEEeCCChhHHHHHHHhCCC
Confidence 4455555555555555555443 33332 345555554333 445556898887 456666677775444
Q ss_pred ceEEEeCCCCCCCCCCC-hHHHHHHHHhhh
Q 011969 188 KATVLYDQPPEFFHPTS-LEEKHELFCRLN 216 (474)
Q Consensus 188 ~~~vi~n~~~~~f~~~~-~~~~~~~~~~l~ 216 (474)
+ || |+....+||+. .-+-..+++++|
T Consensus 125 P--VI-Na~~~~~HPtQaLaDl~Ti~e~~g 151 (321)
T 1oth_A 125 P--II-NGLSDLYHPIQILADYLTLQEHYS 151 (321)
T ss_dssp C--EE-ESCCSSCCHHHHHHHHHHHHHHHS
T ss_pred C--EE-cCCCCCCCcHHHHHHHHHHHHHhC
Confidence 4 33 55567788873 223344455544
No 85
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=44.05 E-value=29 Score=32.14 Aligned_cols=77 Identities=12% Similarity=-0.025 Sum_probs=47.4
Q ss_pred EEEEEEeCCC---C----hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCC-------CCCCCchHHH
Q 011969 318 LLFIITGKGP---D----KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSS-------SGLDLPMKVV 383 (474)
Q Consensus 318 ~~l~ivG~g~---~----~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s-------~~e~~p~kv~ 383 (474)
-++.|+..+. + ..++.+..+++|. .+..+-. .++..+.+..||..++|--.+ ...++-..+-
T Consensus 32 ~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~-~~~~v~~---~~d~~~~l~~ad~I~lpGG~~~~~~~~l~~~gl~~~l~ 107 (229)
T 1fy2_A 32 RSAVFIPFAGVTQTWDEYTDKTAEVLAPLGV-NVTGIHR---VADPLAAIEKAEIIIVGGGNTFQLLKESRERGLLAPMA 107 (229)
T ss_dssp CEEEEECTTCCSSCHHHHHHHHHHHHGGGTC-EEEETTS---SSCHHHHHHHCSEEEECCSCHHHHHHHHHHTTCHHHHH
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHHCCC-EEEEEec---cccHHHHHhcCCEEEECCCcHHHHHHHHHHCChHHHHH
Confidence 4666666542 1 2445666677775 3333322 256668899999999952111 0123455777
Q ss_pred HHHhcCCcEEEeccc
Q 011969 384 DMFGCGLPVCAVSYS 398 (474)
Q Consensus 384 Eama~G~PVia~~~~ 398 (474)
|+...|+|++.+..|
T Consensus 108 ~~~~~G~p~~G~sAG 122 (229)
T 1fy2_A 108 DRVKRGALYIGWSAG 122 (229)
T ss_dssp HHHHTTCEEEEETHH
T ss_pred HHHHcCCEEEEECHH
Confidence 888899999999743
No 86
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=44.03 E-value=1.2e+02 Score=24.09 Aligned_cols=107 Identities=6% Similarity=-0.035 Sum_probs=65.5
Q ss_pred CCEEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHhc----
Q 011969 316 PRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGC---- 388 (474)
Q Consensus 316 ~~~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama~---- 388 (474)
...+++|+.+.+. .+.+.+..+..|. .|.... +.++....+.. .|++++= ......-|..+++.+..
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~-~v~~~~---~~~~a~~~l~~~~~dlii~d--~~l~~~~g~~~~~~l~~~~~~ 79 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGF-HIISAD---SGGQCIDLLKKGFSGVVLLD--IMMPGMDGWDTIRAILDNSLE 79 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTC-EEEEES---SHHHHHHHHHTCCCEEEEEE--SCCSSSCHHHHHHHHHHTTCC
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCe-EEEEeC---CHHHHHHHHHhcCCCEEEEe--CCCCCCCHHHHHHHHHhhccc
Confidence 3467888886543 3556666666665 344443 35676666665 5777762 12222345667777643
Q ss_pred -CCcEEEecc----cccccccccCCcEEEeC--CHHHHHHHHHHHHh
Q 011969 389 -GLPVCAVSY----SCIEELVKVDKNGLLFS--SSSELADQLLMLFK 428 (474)
Q Consensus 389 -G~PVia~~~----~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~ 428 (474)
.+|||.... ....+.+..+..+++.. +.++|...|..++.
T Consensus 80 ~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 80 QGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp TTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 578877532 23334455566778875 68899999988876
No 87
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=43.79 E-value=48 Score=29.17 Aligned_cols=40 Identities=8% Similarity=-0.084 Sum_probs=28.2
Q ss_pred HHHHhcccEEEeeccCCCC-CCCchHHHH---HHhcCCcEEEec
Q 011969 357 PLLLGSADLGVCLHTSSSG-LDLPMKVVD---MFGCGLPVCAVS 396 (474)
Q Consensus 357 ~~~l~~adv~v~~~~~s~~-e~~p~kv~E---ama~G~PVia~~ 396 (474)
...+..||++|...+|..+ +.=+.+.+| |.|.|+||++-.
T Consensus 62 ~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~ 105 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFT 105 (161)
T ss_dssp HHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 5779999999997665333 111235555 789999999954
No 88
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=43.10 E-value=1.2e+02 Score=23.94 Aligned_cols=108 Identities=9% Similarity=0.041 Sum_probs=67.4
Q ss_pred CEEEEEEeCCCC-hHHHHHHHHH-cCCCcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHhc----
Q 011969 317 RLLFIITGKGPD-KESYEEKIRR-LRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGC---- 388 (474)
Q Consensus 317 ~~~l~ivG~g~~-~~~~~~~~~~-l~l~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama~---- 388 (474)
..+++|+.+.+. ...+.+..+. .+...|..... .++....+.. .|++++-. .....-|..+++.+..
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~---~~~a~~~l~~~~~dlii~d~--~l~~~~g~~~~~~l~~~~~~ 82 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYN---PFDAGDLLHTVKPDVVMLDL--MMVGMDGFSICHRIKSTPAT 82 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECS---HHHHHHHHHHTCCSEEEEET--TCTTSCHHHHHHHHHTSTTT
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECC---HHHHHHHHHhcCCCEEEEec--ccCCCcHHHHHHHHHhCccc
Confidence 467888886543 3456666676 66643555533 5666666654 68888732 1222245567777654
Q ss_pred -CCcEEEec-ccc---cccccccCCcEEEeC--CHHHHHHHHHHHHhC
Q 011969 389 -GLPVCAVS-YSC---IEELVKVDKNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 389 -G~PVia~~-~~~---~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
++|||... ... ..+.+..+..+++.. +.++|...|..+++.
T Consensus 83 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 83 ANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp TTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred cCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 67888653 222 234455677888875 699999999998875
No 89
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=43.10 E-value=47 Score=30.70 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=30.2
Q ss_pred CCCCceEEEEEeCCCCCCchHHHHHHHHHhh-CCCeEEEEecCCC-CCCcceeccCCeEEEEee
Q 011969 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQ-MSLEVDVVAYGGS-KPHAAILEHPSIHIHTMT 62 (474)
Q Consensus 1 m~~~~~~~i~~~~~~g~~~r~~~~a~~l~~~-~g~eV~Vv~~~~~-~~~~~~~~~~gi~i~~~~ 62 (474)
|.+++|+.|++.|. | .-++.....+.+. .+++|..|..... ....+.....||.++.++
T Consensus 5 ~~~~~ri~vl~SG~-g--snl~all~~~~~~~~~~~I~~Vis~~~~a~~l~~A~~~gIp~~~~~ 65 (215)
T 3kcq_A 5 MKKELRVGVLISGR-G--SNLEALAKAFSTEESSVVISCVISNNAEARGLLIAQSYGIPTFVVK 65 (215)
T ss_dssp --CCEEEEEEESSC-C--HHHHHHHHHTCCC-CSEEEEEEEESCTTCTHHHHHHHTTCCEEECC
T ss_pred CCCCCEEEEEEECC-c--HHHHHHHHHHHcCCCCcEEEEEEeCCcchHHHHHHHHcCCCEEEeC
Confidence 67788899888875 1 1222222222221 1256665554322 222234556799988876
No 90
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=41.84 E-value=2e+02 Score=27.30 Aligned_cols=104 Identities=9% Similarity=0.084 Sum_probs=61.4
Q ss_pred CEEEEEEeCCCCh--HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEee--ccCCCC--CCCchHHHHHHh---
Q 011969 317 RLLFIITGKGPDK--ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCL--HTSSSG--LDLPMKVVDMFG--- 387 (474)
Q Consensus 317 ~~~l~ivG~g~~~--~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~--~~~s~~--e~~p~kv~Eama--- 387 (474)
.+.-+|+.+-|.. +++.+.+++.|++.|.+...--+.+.+..+.+.++=|+.. .....| .+++..+.|.+.
T Consensus 123 Gvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr 202 (267)
T 3vnd_A 123 GVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLA 202 (267)
T ss_dssp TCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHH
T ss_pred CCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHH
Confidence 3556777766543 5788889999998777776634567888888888734432 112123 224433444433
Q ss_pred --cCCcEEEecccccc------cccccCCcEEEeCCHHHHHHHHH
Q 011969 388 --CGLPVCAVSYSCIE------ELVKVDKNGLLFSSSSELADQLL 424 (474)
Q Consensus 388 --~G~PVia~~~~~~~------e~v~~~~~G~l~~~~~~la~~i~ 424 (474)
..+||++- +|+. +.+..+-.|+++.+ .+.+.|.
T Consensus 203 ~~~~~pv~vG--fGI~~~e~~~~~~~~gADgvVVGS--aiv~~i~ 243 (267)
T 3vnd_A 203 EFNAPPPLLG--FGIAEPEQVRAAIKAGAAGAISGS--AVVKIIE 243 (267)
T ss_dssp TTTCCCEEEC--SSCCSHHHHHHHHHTTCSEEEECH--HHHHHHH
T ss_pred HhcCCCEEEE--CCcCCHHHHHHHHHcCCCEEEECH--HHHHHHH
Confidence 47898873 2221 24557788999986 4454444
No 91
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=41.83 E-value=1.1e+02 Score=24.47 Aligned_cols=66 Identities=11% Similarity=0.062 Sum_probs=36.5
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQH 179 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~~ 179 (474)
.+.|+|++..+.......+...++.+...+++....+..+ .. .++ ...+|.+++.......
T Consensus 68 ~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~-------------~~---~l~---~~g~~~v~~p~~~~~~ 128 (140)
T 1lss_A 68 EDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEY-------------KD---VFE---RLGVDVVVSPELIAAN 128 (140)
T ss_dssp TTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTH-------------HH---HHH---HTTCSEEECHHHHHHH
T ss_pred ccCCEEEEeeCCchHHHHHHHHHHHcCCCEEEEEecCHhH-------------HH---HHH---HcCCCEEECHHHHHHH
Confidence 6799998876543323333444444443456665554421 01 111 1346888888877777
Q ss_pred HHHHH
Q 011969 180 ELAQN 184 (474)
Q Consensus 180 ~l~~~ 184 (474)
.+.+.
T Consensus 129 ~~~~~ 133 (140)
T 1lss_A 129 YIEKL 133 (140)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 92
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=41.80 E-value=87 Score=26.22 Aligned_cols=108 Identities=14% Similarity=0.126 Sum_probs=68.7
Q ss_pred CCEEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHh-----
Q 011969 316 PRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG----- 387 (474)
Q Consensus 316 ~~~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama----- 387 (474)
.+++++|+=+.+. ...+.+..++.|...|.... +.++....++. .|+.++= -.-...-|..+++.+-
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~---~g~~al~~~~~~~~DlillD--~~MP~mdG~el~~~ir~~~~~ 85 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEAD---DGLTALPMLKKGDFDFVVTD--WNMPGMQGIDLLKNIRADEEL 85 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEES---SHHHHHHHHHHHCCSEEEEE--SCCSSSCHHHHHHHHHHSTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEEC---CHHHHHHHHHhCCCCEEEEc--CCCCCCCHHHHHHHHHhCCCC
Confidence 4577888876543 34566667777775565442 24555555554 5787772 1122334667777774
Q ss_pred cCCcEEEecc-ccc---ccccccCCcEEEeC--CHHHHHHHHHHHHh
Q 011969 388 CGLPVCAVSY-SCI---EELVKVDKNGLLFS--SSSELADQLLMLFK 428 (474)
Q Consensus 388 ~G~PVia~~~-~~~---~e~v~~~~~G~l~~--~~~~la~~i~~l~~ 428 (474)
..+|||.... +.. .+..+.|.++++.. ++++|.+.|.++++
T Consensus 86 ~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 86 KHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp TTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred CCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 5689987543 322 23455678899985 79999999998875
No 93
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=40.79 E-value=47 Score=26.37 Aligned_cols=64 Identities=22% Similarity=0.248 Sum_probs=46.3
Q ss_pred CCCEEEEEEeCCC-ChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEE
Q 011969 315 YPRLLFIITGKGP-DKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVC 393 (474)
Q Consensus 315 ~~~~~l~ivG~g~-~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVi 393 (474)
..+..++|+|.-+ .+++++++++.+|. .+.+. |+ +..|++|+ . +..+.|+-.|...|+|||
T Consensus 8 l~G~~~v~TG~l~~~R~e~~~~i~~~Gg---~v~~s-Vs--------kkt~~LV~---g---~~~gsK~~kA~~lgI~Ii 69 (92)
T 1l7b_A 8 LKGLTFVITGELSRPREEVKALLRRLGA---KVTDS-VS--------RKTSYLVV---G---ENPGSKLEKARALGVPTL 69 (92)
T ss_dssp STTCEEECSTTTTSCHHHHHHHHHHTTC---EEESC-CS--------SSCCCBEE---C---SSSSTTHHHHHCSSSCCE
T ss_pred cCCcEEEEecCCCCCHHHHHHHHHHcCC---EEeCc-cc--------CCeeEEEe---C---CCCChHHHHHHHcCCcEE
Confidence 4578999999543 67889999999984 23343 32 46677777 2 234679999999999999
Q ss_pred Eec
Q 011969 394 AVS 396 (474)
Q Consensus 394 a~~ 396 (474)
.-+
T Consensus 70 ~E~ 72 (92)
T 1l7b_A 70 TEE 72 (92)
T ss_dssp EHH
T ss_pred eHH
Confidence 743
No 94
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=40.44 E-value=40 Score=29.61 Aligned_cols=70 Identities=16% Similarity=0.195 Sum_probs=41.0
Q ss_pred HHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccc----cccccccCCc------EEEeCCHHHHHHHHHHHH
Q 011969 358 LLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IEELVKVDKN------GLLFSSSSELADQLLMLF 427 (474)
Q Consensus 358 ~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~----~~e~v~~~~~------G~l~~~~~~la~~i~~l~ 427 (474)
..+..||++|.... ....|...-+-=|.+.|+||++..... +.-++ .+.+ -+.+ |.+++...|...+
T Consensus 73 ~~i~~aD~vva~~~-~~d~Gt~~EiGyA~algKPVi~l~~~~~~~~~n~M~-~g~~~~~~~~~~~y-~~~el~~~l~~~~ 149 (165)
T 2khz_A 73 NWLQQADVVVAEVT-QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMI-RGAADGSRFQVWDY-AEGEVETMLDRYF 149 (165)
T ss_dssp HHHHHCSEEEEECS-SCCHHHHHHHHHHHHTCSSEEEEECTTTTCCCCHHH-HHTCCSSSEEEEEC-CTTTHHHHHHHHH
T ss_pred HHHHhCCEEEEECC-CCCCCHHHHHHHHHHCCCEEEEEEcCCCCCcchhhh-cccCccceeEEEec-CHHHHHHHHHHHH
Confidence 56999999999643 222222233444789999999963222 22222 1111 1223 7778888888887
Q ss_pred hCC
Q 011969 428 KGF 430 (474)
Q Consensus 428 ~~~ 430 (474)
+..
T Consensus 150 ~~~ 152 (165)
T 2khz_A 150 EAY 152 (165)
T ss_dssp HTS
T ss_pred Hhc
Confidence 753
No 95
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=40.32 E-value=1.4e+02 Score=29.03 Aligned_cols=168 Identities=14% Similarity=0.018 Sum_probs=94.1
Q ss_pred CCChhHHHHHHHHHhhCCCcEEEE-ecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEe--CHHHHHHHHHHhC
Q 011969 110 PPSVPTLVAVKWASSLRRSAFIVD-WHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCV--TQAMQHELAQNWG 186 (474)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~-~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~v--S~~~~~~l~~~~~ 186 (474)
-|+.-|-...-.+.+..|..+++- ..+. .+.++.-.+. -.-+.+.+++|.+++= .+...+++.+.-+
T Consensus 53 e~STRTR~SFe~A~~~LGg~~i~l~~~~~------s~~~kgEsl~----DTarvls~~~D~iviR~~~~~~~~~la~~~~ 122 (308)
T 1ml4_A 53 EPSTRTRLSFESAMHRLGGAVIGFAEAST------SSVKKGESLR----DTIKTVEQYCDVIVIRHPKEGAARLAAEVAE 122 (308)
T ss_dssp SCCSHHHHHHHHHHHHTTCEEEEESCGGG------SGGGGTCCHH----HHHHHHTTTCSEEEEEESSTTHHHHHHHTCS
T ss_pred CCCchHHHHHHHHHHHhCCeEEEeCCCcc------ccccCCCCHH----HHHHHHHHhCcEEEEecCChhHHHHHHHhCC
Confidence 345566655555666566554432 2221 0223344443 2334566788987763 4455666766434
Q ss_pred CceEEEeCCCC-CCCCCCC-hHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEE
Q 011969 187 IKATVLYDQPP-EFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVS 264 (474)
Q Consensus 187 ~~~~vi~n~~~-~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 264 (474)
.+ | .|+.+ ..+||+. .-+-..+++++| .-.-+.+.|
T Consensus 123 vP--V-INag~g~~~HPtQ~LaDl~Ti~e~~g---------------------------------------~l~gl~va~ 160 (308)
T 1ml4_A 123 VP--V-INAGDGSNQHPTQTLLDLYTIKKEFG---------------------------------------RIDGLKIGL 160 (308)
T ss_dssp SC--E-EEEEETTSCCHHHHHHHHHHHHHHSS---------------------------------------CSSSEEEEE
T ss_pred CC--E-EeCccCCccCcHHHHHHHHHHHHHhC---------------------------------------CCCCeEEEE
Confidence 43 3 35433 6688873 223344444444 111237889
Q ss_pred EeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHHHHHHHcCCC
Q 011969 265 STSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEKIRRLRLK 342 (474)
Q Consensus 265 ~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~~~~~~l~l~ 342 (474)
+|-.....=..-++.++..+ ++++.++|.... .+++.+.+++.|.
T Consensus 161 vGD~~~~rva~Sl~~~~~~~--------------------------------G~~v~~~~P~~~~~~~~~~~~~~~~g~- 207 (308)
T 1ml4_A 161 LGDLKYGRTVHSLAEALTFY--------------------------------DVELYLISPELLRMPRHIVEELREKGM- 207 (308)
T ss_dssp ESCTTTCHHHHHHHHHGGGS--------------------------------CEEEEEECCGGGCCCHHHHHHHHHTTC-
T ss_pred eCCCCcCchHHHHHHHHHHC--------------------------------CCEEEEECCccccCCHHHHHHHHHcCC-
Confidence 99875544445555665543 589999995322 2446666776663
Q ss_pred cEEEecCCCCcccHHHHHhcccEEEe
Q 011969 343 RVAFRTMWLSAEDYPLLLGSADLGVC 368 (474)
Q Consensus 343 ~V~f~g~~v~~~~~~~~l~~adv~v~ 368 (474)
.+.+. .++.+.+..||++..
T Consensus 208 ~~~~~------~d~~eav~~aDvvyt 227 (308)
T 1ml4_A 208 KVVET------TTLEDVIGKLDVLYV 227 (308)
T ss_dssp CEEEE------SCTHHHHTTCSEEEE
T ss_pred eEEEE------cCHHHHhcCCCEEEE
Confidence 34443 566788999999998
No 96
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0
Probab=40.08 E-value=29 Score=34.39 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=63.4
Q ss_pred CEEEEEE-eCCCChHHHHHHHHHcCCCcEEEecCCCCc-ccHHHHHhcccEE--EeeccCC-CC--CCCc-hHHHHHHhc
Q 011969 317 RLLFIIT-GKGPDKESYEEKIRRLRLKRVAFRTMWLSA-EDYPLLLGSADLG--VCLHTSS-SG--LDLP-MKVVDMFGC 388 (474)
Q Consensus 317 ~~~l~iv-G~g~~~~~~~~~~~~l~l~~V~f~g~~v~~-~~~~~~l~~adv~--v~~~~~s-~~--e~~p-~kv~Eama~ 388 (474)
++.+.+= |.....+.+.+.+..++.++|. .|.++.. ++...++....+. +||.+.- .+ .+++ ..+-+.+..
T Consensus 193 gl~~~~HagE~~~~~~i~~al~~lg~~rIg-Hgv~l~~d~~l~~~l~~~~i~le~cP~SN~~l~~~~~~~~hPi~~ll~~ 271 (343)
T 3rys_A 193 GLRRIAHAGEEGPASYITEALDVLHVERID-HGIRCMEDTDVVQRLVAEQVPLTVCPLSNVRLRAVDKLADHPLPEMLAI 271 (343)
T ss_dssp TCEEEEEESSSSCHHHHHHHHHTSCCSEEE-ECGGGGGCHHHHHHHHHHTCCEEECHHHHHHTTSSSCGGGCSHHHHHHT
T ss_pred CCeEEEeeCCCCCHHHHHHHHhcCCcceee-eeeeecCChHHHHHHHhcCCCeeEchhHHHHhCCCCCcccchHHHHHHC
Confidence 3444333 4333445666666667776655 4554543 4567777766554 5541100 11 1221 257888999
Q ss_pred CCcEEEe-cccccccccccCCcEEEeCC-HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 389 GLPVCAV-SYSCIEELVKVDKNGLLFSS-SSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 389 G~PVia~-~~~~~~e~v~~~~~G~l~~~-~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
|+||... |.+++.. .+ .+++..+...+ . .+.++..++..|+.+.+
T Consensus 272 Gv~V~l~TDdp~~~~-----------~~l~~E~~~a~~~~-~---l~~~~l~~l~~nsi~~s 318 (343)
T 3rys_A 272 GLNVCVNSDDPAYFG-----------GYVDDNFEQLVKVL-E---FSVPEQATLAANSIRSS 318 (343)
T ss_dssp TCCEEECCBSTTTTT-----------CCHHHHHHHHHHHH-C---CCHHHHHHHHHHHHHHS
T ss_pred CCeEEEeCCCccccC-----------CCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHHHH
Confidence 9998654 4333221 12 34444444432 2 36788888988888754
No 97
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=39.82 E-value=1.2e+02 Score=26.62 Aligned_cols=109 Identities=12% Similarity=0.028 Sum_probs=68.6
Q ss_pred CCEEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHh---------------cccEEEeeccCCCCCCCc
Q 011969 316 PRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLG---------------SADLGVCLHTSSSGLDLP 379 (474)
Q Consensus 316 ~~~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~---------------~adv~v~~~~~s~~e~~p 379 (474)
...+++|+-+.+. ...+.+..++.|...|..... .++...++. ..|++++=.. ....-|
T Consensus 60 ~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~---~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~--lp~~~G 134 (206)
T 3mm4_A 60 RGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDS---GKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQ--MPEMDG 134 (206)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESS---HHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESC--CSSSCH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCC---HHHHHHHHHhhcccccccccccCCCCCEEEEcCC--CCCCCH
Confidence 4568888886543 355667777777645555533 666666665 4688887321 222345
Q ss_pred hHHHHHHh-------cCCcEEEecccc-----cccccccCCcEEEeCCHHHHHHHHHHHHhC
Q 011969 380 MKVVDMFG-------CGLPVCAVSYSC-----IEELVKVDKNGLLFSSSSELADQLLMLFKG 429 (474)
Q Consensus 380 ~kv~Eama-------~G~PVia~~~~~-----~~e~v~~~~~G~l~~~~~~la~~i~~l~~~ 429 (474)
..+++.+. ..+|||...... ..+.+..+..+++....++|.+.|..+++.
T Consensus 135 ~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~~L~~~i~~~l~~ 196 (206)
T 3mm4_A 135 YEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLNQLANVIREIESK 196 (206)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCTTHHHHHHHHC--
T ss_pred HHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHHHHHHHHHHHHhh
Confidence 56666654 568998765322 234455677889987655899999988874
No 98
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=39.43 E-value=2.8e+02 Score=27.43 Aligned_cols=180 Identities=12% Similarity=-0.024 Sum_probs=92.6
Q ss_pred CCCChhHHHHHHHHHhhCCCcEEEE-ecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeC--HHHHHHHHHHh
Q 011969 109 NPPSVPTLVAVKWASSLRRSAFIVD-WHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVT--QAMQHELAQNW 185 (474)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~~-~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS--~~~~~~l~~~~ 185 (474)
.-++.-|-...-.+....|..+++- ..+. ++++.-.+. -.-+.+.+++|.+++=. +...+.+.+.-
T Consensus 74 ~e~STRTR~SFE~A~~~LGg~~i~l~~~~s-------~l~kgEsl~----DTarvLs~~~D~IviR~~~~~~~~~lA~~s 142 (353)
T 3sds_A 74 SKRSTRTRVSTEGAVVKMGGHPMFLGKDDI-------QLGVNESLY----DTSVVISSMVSCIVARVGPHSDIANLAKHS 142 (353)
T ss_dssp SSCCHHHHHHHHHHHHHTTCEEEEECTTTC---------CCSSCHH----HHHHHHHTSCSEEEEECSSHHHHHHHHHHC
T ss_pred cCCchhHHHHHHHHHHHcCCeEEecCCccc-------cccCCccHH----HHHHHHHHhcCEEEEEeCChHHHHHHHhhC
Confidence 3345666655556666666555432 2222 234444443 23345567789887754 45566777754
Q ss_pred CCceEEEeCCCCCCCCCCC-hHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEE
Q 011969 186 GIKATVLYDQPPEFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVS 264 (474)
Q Consensus 186 ~~~~~vi~n~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 264 (474)
+++ | .|+....+||+. .-+-..+++.+|...+ +.+ ... ....-.-+.+.|
T Consensus 143 ~vP--V-INag~d~~HPtQaLaDl~TI~E~~G~~~~-----------------------~~~-~~~--~~~~l~glkva~ 193 (353)
T 3sds_A 143 SVP--V-INALCDTFHPLQAIADFLTIHESFASQSA-----------------------THG-THP--SSLGLEGLKIAW 193 (353)
T ss_dssp SSC--E-EEEECSSCCHHHHHHHHHHHHHHTC--------------------------------CT--TCCSCTTCEEEE
T ss_pred CCC--E-EECCCCCCCcHHHHHHHHHHHHHhCCCcc-----------------------ccc-ccc--cccccCCCEEEE
Confidence 554 3 344335678873 2234455556551000 000 000 000002237889
Q ss_pred EeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHHHHHHHcCC-
Q 011969 265 STSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEKIRRLRL- 341 (474)
Q Consensus 265 ~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~~~~~~l~l- 341 (474)
+|-+.. =..-++.++..+ ++++.++|.... .+++.+.+++.+.
T Consensus 194 vGD~~n--va~Sl~~~l~~l--------------------------------G~~v~~~~P~~~~~~~~i~~~~~~~a~~ 239 (353)
T 3sds_A 194 VGDANN--VLFDLAIAATKM--------------------------------GVNVAVATPRGYEIPSHIVELIQKAREG 239 (353)
T ss_dssp ESCCCH--HHHHHHHHHHHT--------------------------------TCEEEEECCTTCCCCHHHHHHHHHHHTT
T ss_pred ECCCch--HHHHHHHHHHHc--------------------------------CCEEEEECCcccCCCHHHHHHHHHhhhh
Confidence 998731 233344444432 578999995432 3556666655411
Q ss_pred ----CcEEEecCCCCcccHHHHHhcccEEEe
Q 011969 342 ----KRVAFRTMWLSAEDYPLLLGSADLGVC 368 (474)
Q Consensus 342 ----~~V~f~g~~v~~~~~~~~l~~adv~v~ 368 (474)
..+.+. .++.+.+..||++..
T Consensus 240 ~~~g~~~~~~------~d~~eav~~aDVvyt 264 (353)
T 3sds_A 240 VQSPGNLTQT------TVPEVAVKDADVIVT 264 (353)
T ss_dssp CSSCCCEEEE------SCHHHHTTTCSEEEE
T ss_pred ccCCCeEEEE------CCHHHHhcCCCEEEe
Confidence 134443 577888999999987
No 99
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=39.33 E-value=1e+02 Score=29.74 Aligned_cols=82 Identities=11% Similarity=0.122 Sum_probs=51.7
Q ss_pred CEEEEEEeCCC-C----hHHHHHHHHHcCCCcEEEecCC----CCcccHHHHHhcccEEEeeccCC-------CCCCCch
Q 011969 317 RLLFIITGKGP-D----KESYEEKIRRLRLKRVAFRTMW----LSAEDYPLLLGSADLGVCLHTSS-------SGLDLPM 380 (474)
Q Consensus 317 ~~~l~ivG~g~-~----~~~~~~~~~~l~l~~V~f~g~~----v~~~~~~~~l~~adv~v~~~~~s-------~~e~~p~ 380 (474)
+-++.++..-. + .+.+.+..+++|.+.|..+.-. .+.+++...+..||+.++.--.+ ...++-.
T Consensus 56 ~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt~~l~~~l~~t~l~~ 135 (291)
T 3en0_A 56 DAIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQLRLCGLLADTPLMD 135 (291)
T ss_dssp GCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHHHHHHHHTTCHHHH
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCCHHHHHHHHHhCCHHH
Confidence 45666665321 2 2556777888888777666320 23456788999999999831111 1122334
Q ss_pred HHHHHHhcC-CcEEEeccc
Q 011969 381 KVVDMFGCG-LPVCAVSYS 398 (474)
Q Consensus 381 kv~Eama~G-~PVia~~~~ 398 (474)
.+-|+...| +|++.++.|
T Consensus 136 ~L~~~~~~G~~~~~GtSAG 154 (291)
T 3en0_A 136 RIRQRVHNGEISLAGTSAG 154 (291)
T ss_dssp HHHHHHHTTSSEEEEETHH
T ss_pred HHHHHHHCCCeEEEEeCHH
Confidence 777888899 999988754
No 100
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=38.36 E-value=1.4e+02 Score=23.31 Aligned_cols=106 Identities=12% Similarity=-0.000 Sum_probs=65.4
Q ss_pred EEEEEEeCCCC-hHHHHHHHHHcCCC-cEEEecCCCCcccHHHHHhc---------ccEEEeeccCCCCCCCchHHHHHH
Q 011969 318 LLFIITGKGPD-KESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGS---------ADLGVCLHTSSSGLDLPMKVVDMF 386 (474)
Q Consensus 318 ~~l~ivG~g~~-~~~~~~~~~~l~l~-~V~f~g~~v~~~~~~~~l~~---------adv~v~~~~~s~~e~~p~kv~Eam 386 (474)
.+++|+.+.+. .+.+.+..+..+.. .|..... .++....+.. .|++++=. .....-|..+++.+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~---~~~a~~~l~~~~~~~~~~~~dlvi~d~--~~~~~~g~~~~~~l 77 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRD---GMEAMAYLRQEGEYANASRPDLILLXL--NLPKKDGREVLAEI 77 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECS---HHHHHHHHTTCGGGGSCCCCSEEEECS--SCSSSCHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECC---HHHHHHHHHcccccccCCCCcEEEEec--CCCcccHHHHHHHH
Confidence 46777775543 35566666666652 4555533 6777777764 78888721 12222355666665
Q ss_pred h-----cCCcEEEecc-c---ccccccccCCcEEEeC--CHHHHHHHHHHHHh
Q 011969 387 G-----CGLPVCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFK 428 (474)
Q Consensus 387 a-----~G~PVia~~~-~---~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~ 428 (474)
. .++|||.... . ...+....+..|++.. +.+++...|..+++
T Consensus 78 ~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 78 KSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp HHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHH
Confidence 4 4678887542 2 2334455677888875 68899999988865
No 101
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=37.54 E-value=1.5e+02 Score=23.25 Aligned_cols=107 Identities=12% Similarity=0.034 Sum_probs=63.8
Q ss_pred EEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHh--cccEEEeeccCCCCCCCchHHHHHHh---cCCc
Q 011969 318 LLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLG--SADLGVCLHTSSSGLDLPMKVVDMFG---CGLP 391 (474)
Q Consensus 318 ~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~--~adv~v~~~~~s~~e~~p~kv~Eama---~G~P 391 (474)
++++|+.+.+. .+.+.+..++.|...+.... +.++....+. ..|+.++=. .....-|..+++.+. ..+|
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~---~~~~a~~~~~~~~~dlii~d~--~l~~~~g~~~~~~l~~~~~~~~ 76 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELT---EGGSAVQRVETLKPDIVIIDV--DIPGVNGIQVLETLRKRQYSGI 76 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEES---SSTTHHHHHHHHCCSEEEEET--TCSSSCHHHHHHHHHHTTCCSE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcC---CHHHHHHHHHhcCCCEEEEec--CCCCCChHHHHHHHHhcCCCCe
Confidence 56777776543 35566666666633331222 2455555554 468888732 222234556666554 3577
Q ss_pred EEEecc-c---ccccccccCCcEEEeC--CHHHHHHHHHHHHhC
Q 011969 392 VCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 392 Via~~~-~---~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
||.... . ...+....|..|++.. +.+++.++|..+++.
T Consensus 77 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 77 IIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp EEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred EEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 776532 2 3334456677888885 689999999999875
No 102
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=37.37 E-value=3.2e+02 Score=27.13 Aligned_cols=176 Identities=16% Similarity=0.078 Sum_probs=97.1
Q ss_pred EeCCCChhHHHHHHHHHhhCCCcEEEE-ecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEe--CHHHHHHHHH
Q 011969 107 VQNPPSVPTLVAVKWASSLRRSAFIVD-WHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCV--TQAMQHELAQ 183 (474)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~v--S~~~~~~l~~ 183 (474)
+-.-|+.-|-...-.+....|..+++- ..+. +.++.-.+.-. -+.+.+++|.|++= .+...+.+++
T Consensus 73 lF~e~STRTR~SFE~A~~~LGg~vi~l~~~~s-------s~~kgEsl~DT----arvLs~~~D~IviR~~~~~~~~~lA~ 141 (359)
T 2w37_A 73 LFEKSSTRTRSAFTTASIDLGAHPEYLGQNDI-------QLGKKESTSDT----AKVLGSMFDGIEFRGFKQSDAEILAR 141 (359)
T ss_dssp EESSCCHHHHHHHHHHHHHTTCEEEEECTTTC-------CTTTSSCHHHH----HHHHHHHCSEEEEESSCHHHHHHHHH
T ss_pred EecCCCccHHHHHHHHHHHcCCeEEEeCCccc-------cCCCCcCHHHH----HHHHHHhcCEEEEecCChHHHHHHHH
Confidence 333345666655666666666655542 2222 33445455433 33445568987765 4555666777
Q ss_pred HhCCceEEEeCCCCCCCCCCC-hHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEE
Q 011969 184 NWGIKATVLYDQPPEFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALV 262 (474)
Q Consensus 184 ~~~~~~~vi~n~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 262 (474)
..+++ | .|+....+||+. .-.-..+++.+| .-.-+.+
T Consensus 142 ~s~vP--V-INa~~~~~HPtQaLaDl~Ti~E~~g---------------------------------------~l~gl~v 179 (359)
T 2w37_A 142 DSGVP--V-WNGLTDEWHPTQMLADFMTVKENFG---------------------------------------KLQGLTL 179 (359)
T ss_dssp HSSSC--E-EEEECSSCCHHHHHHHHHHHHHHHS---------------------------------------CCTTCEE
T ss_pred hCCCC--E-EcCCCCCCCccHHHHHHHHHHHHhC---------------------------------------CcCCeEE
Confidence 55554 3 345457788873 223344445544 1112378
Q ss_pred EEEeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHH----HHHH
Q 011969 263 VSSTSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESY----EEKI 336 (474)
Q Consensus 263 ~~~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~----~~~~ 336 (474)
.|+|-. ...=..-++.++..+ ++.+.++|.... .+++ ++.+
T Consensus 180 a~vGD~-~~rva~Sl~~~~~~l--------------------------------G~~v~~~~P~~l~p~~~~~~~~~~~a 226 (359)
T 2w37_A 180 TFMGDG-RNNVANSLLVTGAIL--------------------------------GVNIHIVAPKALFPTEETQNIAKGFA 226 (359)
T ss_dssp EEESCT-TSHHHHHHHHHHHHH--------------------------------TCEEEEECCGGGSCCHHHHHHHHHHH
T ss_pred EEECCC-ccchHHHHHHHHHHc--------------------------------CCEEEEECCccccCCHHHHHHHHHHH
Confidence 899986 233334455555543 478999995321 1223 3344
Q ss_pred HHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCC
Q 011969 337 RRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSG 375 (474)
Q Consensus 337 ~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~ 375 (474)
++.|. .|.+. .++.+.+..||++....-.|.|
T Consensus 227 ~~~G~-~v~~~------~d~~eav~~aDvvytd~w~smg 258 (359)
T 2w37_A 227 EKSGA-KLVIT------DDLDEGLKGSNVVYTDVWVSMG 258 (359)
T ss_dssp HHHTC-CEEEE------SCHHHHHTTCSEEEECCSCCTT
T ss_pred HHcCC-eEEEE------eCHHHHhcCCCEEEEccccccc
Confidence 46653 45544 6778889999999984333333
No 103
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=37.30 E-value=29 Score=32.03 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=28.5
Q ss_pred CCCCceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 011969 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYG 42 (474)
Q Consensus 1 m~~~~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~ 42 (474)
|.++|++.+.+.|..|. ......+..|.+. |++|+|+...
T Consensus 1 m~~~k~IllgvTGaiaa-~k~~~ll~~L~~~-g~eV~vv~T~ 40 (209)
T 3zqu_A 1 MSGPERITLAMTGASGA-QYGLRLLDCLVQE-EREVHFLISK 40 (209)
T ss_dssp CCSCSEEEEEECSSSCH-HHHHHHHHHHHHT-TCEEEEEECH
T ss_pred CCCCCEEEEEEECHHHH-HHHHHHHHHHHHC-CCEEEEEECc
Confidence 88888998888887653 2233445666665 9999999854
No 104
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=37.09 E-value=1.5e+02 Score=23.65 Aligned_cols=107 Identities=8% Similarity=0.138 Sum_probs=67.5
Q ss_pred CEEEEEEeCCCC-hHHHHHHHHHcCCC-cEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHhc----
Q 011969 317 RLLFIITGKGPD-KESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGC---- 388 (474)
Q Consensus 317 ~~~l~ivG~g~~-~~~~~~~~~~l~l~-~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama~---- 388 (474)
..+++|+.+.+. ...+.+..++.+.. .|.... +.++....+.. .|++++= ......-|..+++.+..
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~---~~~~a~~~l~~~~~dlii~D--~~l~~~~g~~~~~~lr~~~~~ 79 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVD---NGAKALYQVQQAKYDLIILD--IGLPIANGFEVMSAVRKPGAN 79 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEES---SHHHHHHHHTTCCCSEEEEC--TTCGGGCHHHHHHHHHSSSTT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEEC---CHHHHHHHhhcCCCCEEEEe--CCCCCCCHHHHHHHHHhcccc
Confidence 467888886543 35566677777763 344443 35666666655 5777772 11223346677777654
Q ss_pred -CCcEEEeccc----ccccccccCCcEEEeC---CHHHHHHHHHHHHh
Q 011969 389 -GLPVCAVSYS----CIEELVKVDKNGLLFS---SSSELADQLLMLFK 428 (474)
Q Consensus 389 -G~PVia~~~~----~~~e~v~~~~~G~l~~---~~~~la~~i~~l~~ 428 (474)
++|||..... ...+.+..|..+++.. +.++|.++|..+++
T Consensus 80 ~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 80 QHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp TTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 6888876432 2234456677888874 67889888888876
No 105
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=36.89 E-value=2.7e+02 Score=27.79 Aligned_cols=168 Identities=15% Similarity=0.117 Sum_probs=92.4
Q ss_pred CCCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeC--HHHHHHHHHHhC
Q 011969 109 NPPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVT--QAMQHELAQNWG 186 (474)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS--~~~~~~l~~~~~ 186 (474)
.-|+.-|-...-.+....|..+++- +. . ..+.++.-.+.-.. +.+.+++|.++.=. +...+.+++.-+
T Consensus 79 ~e~STRTR~SFE~A~~~LGg~vi~l--~~--~--~ss~~kgEsl~DTa----rvLs~~~D~IviR~~~~~~~~~lA~~s~ 148 (365)
T 4amu_A 79 QKDSTRTRCAFEVAASDLGAGVTYI--GP--S--GSNMGKKESIEDTA----KVLGRFYDGIEFRGFAQSDVDALVKYSG 148 (365)
T ss_dssp SSCCHHHHHHHHHHHHHHTCEEEEE--CH--H--HHCCSSSSCHHHHH----HHHHHHCSEEEEECSCHHHHHHHHHHHC
T ss_pred cCCCchHHHHHHHHHHhCCCEEEEc--CC--c--cccCCCCcCHHHHH----HHHHhhCcEEEEecCChhHHHHHHHhCC
Confidence 3345666655555566556655542 22 1 11345555554333 34455689887754 455667777666
Q ss_pred CceEEEeCCCCCCCCCCC-hHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEE
Q 011969 187 IKATVLYDQPPEFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSS 265 (474)
Q Consensus 187 ~~~~vi~n~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 265 (474)
++ | .|+....+||+. +-+-..+++.+|. - .-+.+.|+
T Consensus 149 vP--V-INa~~~~~HPtQaLaDl~Ti~E~~G~--------------------------------------l-~glkva~v 186 (365)
T 4amu_A 149 VP--V-WNGLTDDEHPTQIIADFMTMKEKFGN--------------------------------------L-KNKKIVFI 186 (365)
T ss_dssp SC--E-EEEECSSCCHHHHHHHHHHHHHHHSS--------------------------------------C-TTCEEEEE
T ss_pred CC--E-EeCCCCCCCcHHHHHHHHHHHHHhCC--------------------------------------C-CCCEEEEE
Confidence 65 2 344456788873 2233445555551 1 11278899
Q ss_pred eecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC----hHHHH----HHHH
Q 011969 266 TSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD----KESYE----EKIR 337 (474)
Q Consensus 266 G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~----~~~~~----~~~~ 337 (474)
|-...+ =..-++.++..+ .+.+.++|.... .+++. +.++
T Consensus 187 GD~~nn-va~Sl~~~~~~l--------------------------------G~~v~~~~P~~~~p~~~~~~~~~~~~~~~ 233 (365)
T 4amu_A 187 GDYKNN-VGVSTMIGAAFN--------------------------------GMHVVMCGPDNYKNEIDKNVLAKCIELFK 233 (365)
T ss_dssp SSTTSH-HHHHHHHHHHHT--------------------------------TCEEEEESCGGGGGGSCHHHHHHHHHHHH
T ss_pred CCCCcc-hHHHHHHHHHHc--------------------------------CCEEEEECCccccCCCcHHHHHHHHHHHH
Confidence 987321 233455555443 578999995421 12333 3344
Q ss_pred HcCCCcEEEecCCCCcccHHHHHhcccEEEe
Q 011969 338 RLRLKRVAFRTMWLSAEDYPLLLGSADLGVC 368 (474)
Q Consensus 338 ~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~ 368 (474)
+.|. .|.+. .++.+.+..||++..
T Consensus 234 ~~g~-~i~~~------~d~~eav~~aDVVyt 257 (365)
T 4amu_A 234 RNGG-SLRFS------TDKILAAQDADVIYT 257 (365)
T ss_dssp HHSC-EEEEE------SCHHHHTTTCSEEEE
T ss_pred HcCC-EEEEE------CCHHHHhcCCCEEEe
Confidence 4442 44443 677888999999987
No 106
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=36.85 E-value=1.7e+02 Score=23.68 Aligned_cols=109 Identities=13% Similarity=0.174 Sum_probs=66.1
Q ss_pred CCEEEEEEeCCCC-hHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHh---c
Q 011969 316 PRLLFIITGKGPD-KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG---C 388 (474)
Q Consensus 316 ~~~~l~ivG~g~~-~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama---~ 388 (474)
...+++|+.+.+. .+.+.+..+..+. ..|.... +.++....+.. .|++++= ......-|..+++.+. .
T Consensus 19 ~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~---~~~~al~~l~~~~~dlii~D--~~l~~~~g~~~~~~l~~~~~ 93 (150)
T 4e7p_A 19 SHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAK---NGQEAIQLLEKESVDIAILD--VEMPVKTGLEVLEWIRSEKL 93 (150)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEES---SHHHHHHHHTTSCCSEEEEC--SSCSSSCHHHHHHHHHHTTC
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEC---CHHHHHHHhhccCCCEEEEe--CCCCCCcHHHHHHHHHHhCC
Confidence 4578888886543 2445555554442 2343332 35666666654 5788772 1122334556666654 3
Q ss_pred CCcEEEeccc----ccccccccCCcEEEeC--CHHHHHHHHHHHHhC
Q 011969 389 GLPVCAVSYS----CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 389 G~PVia~~~~----~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
.+|||..... ...+.+..+..+++.. +.++|.++|..+++.
T Consensus 94 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 94 ETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcC
Confidence 6788765432 3344566778889885 699999999999875
No 107
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=36.57 E-value=33 Score=32.08 Aligned_cols=76 Identities=12% Similarity=0.091 Sum_probs=41.4
Q ss_pred CCEEEEEEeC--C--CChHHHHHHHHHcCCCcEEEecC--CCCccc--HH---------HHHhccc-EEEeeccCCCCCC
Q 011969 316 PRLLFIITGK--G--PDKESYEEKIRRLRLKRVAFRTM--WLSAED--YP---------LLLGSAD-LGVCLHTSSSGLD 377 (474)
Q Consensus 316 ~~~~l~ivG~--g--~~~~~~~~~~~~l~l~~V~f~g~--~v~~~~--~~---------~~l~~ad-v~v~~~~~s~~e~ 377 (474)
.++.|.|.|. . ..++++++++++.|- .|.--|. ..+... .+ .-....+ .+|+ ++. ..
T Consensus 4 ~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG-~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~li--a~~--~~ 78 (241)
T 2vxb_A 4 DDCVFAFSGPVHEDAYDRSALETVVQDHGG-LVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVV--SDT--FS 78 (241)
T ss_dssp TTEEEEECCCSSTTSSCHHHHHHHHHHTTC-EECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEE--CSS--CC
T ss_pred CCcEEEEecCCCCchhhHHHHHHHHHHCCC-EEecCcchhhccCccccccccccccccccccccccceEEE--cCC--CC
Confidence 4688888886 2 456889999999983 1111010 000000 00 0001111 3333 122 22
Q ss_pred CchHHHHHHhcCCcEEEec
Q 011969 378 LPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 378 ~p~kv~Eama~G~PVia~~ 396 (474)
-..|.+.|++.|.|||..+
T Consensus 79 rt~K~~~ala~gipiV~~~ 97 (241)
T 2vxb_A 79 RKVKYLEALAFNIPCVHPQ 97 (241)
T ss_dssp CCHHHHHHHHHTCCEECTH
T ss_pred CcHHHHHHHHcCCCEecHH
Confidence 3569999999999999885
No 108
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=36.24 E-value=1.5e+02 Score=22.97 Aligned_cols=107 Identities=14% Similarity=0.170 Sum_probs=64.5
Q ss_pred CEEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHhc-----
Q 011969 317 RLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGC----- 388 (474)
Q Consensus 317 ~~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama~----- 388 (474)
..+++|+.+.+. ...+....+..+...|..... .++....+.. .|++++=. .....-|..+++.+..
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~---~~~a~~~~~~~~~dlvi~D~--~l~~~~g~~l~~~l~~~~~~~ 78 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAED---GVDALNKLQAGGYGFVISDW--NMPNMDGLELLKTIRAXXAMS 78 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESS---HHHHHHHHTTCCCCEEEEES--CCSSSCHHHHHHHHHC--CCT
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCC---HHHHHHHHHhcCCCEEEEeC--CCCCCCHHHHHHHHHhhcccC
Confidence 356778876543 244566666666544554432 5566665554 58887721 1222245677777753
Q ss_pred CCcEEEecc-c---ccccccccCCcEEEeC--CHHHHHHHHHHHHh
Q 011969 389 GLPVCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFK 428 (474)
Q Consensus 389 G~PVia~~~-~---~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~ 428 (474)
.+|+|.... . ...+.+..|..+++.. +.+++...+..++.
T Consensus 79 ~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 79 ALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 124 (128)
T ss_dssp TCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHH
Confidence 578876532 2 2334456677888875 68899999888765
No 109
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=36.23 E-value=3.1e+02 Score=26.63 Aligned_cols=166 Identities=14% Similarity=0.099 Sum_probs=92.1
Q ss_pred CChhHHHHHHHHHhhCCCcEEE-EecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeC--HHHHHHHHHHhCC
Q 011969 111 PSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVT--QAMQHELAQNWGI 187 (474)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~-~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS--~~~~~~l~~~~~~ 187 (474)
|+.-|-...-.+.+..|..+++ +..+. +.++.-.+. -.-+.+.+++|.+++=+ +...+.+.+..++
T Consensus 56 ~STRTR~SFe~A~~~LGg~~i~l~~~~s-------s~~kgEsl~----DTarvls~~~D~iviR~~~~~~~~~lA~~~~v 124 (315)
T 1pvv_A 56 PSTRTRVSFEVAMAHLGGHALYLNAQDL-------QLRRGETIA----DTARVLSRYVDAIMARVYDHKDVEDLAKYATV 124 (315)
T ss_dssp CCSHHHHHHHHHHHHTTSEEEEEEGGGS-------TTTTTCCHH----HHHHHHTTTCSEEEEECSSHHHHHHHHHHCSS
T ss_pred CCcchHHHHHHHHHHcCCeEEEECCccc-------cCCCCcCHH----HHHHHHHHhCcEEEEecCchHHHHHHHHhCCC
Confidence 4455555555555555555443 33222 334444443 23445667889887754 4555566665444
Q ss_pred ceEEEeCCCCCCCCCCC-hHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEe
Q 011969 188 KATVLYDQPPEFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSST 266 (474)
Q Consensus 188 ~~~vi~n~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G 266 (474)
+ || |+.+..+||+. .-+-..+++.+|. + .-+.+.|+|
T Consensus 125 P--VI-Na~~~~~HPtQaLaDl~Ti~e~~g~------------------------------------l---~gl~va~vG 162 (315)
T 1pvv_A 125 P--VI-NGLSDFSHPCQALADYMTIWEKKGT------------------------------------I---KGVKVVYVG 162 (315)
T ss_dssp C--EE-EEECSSCCHHHHHHHHHHHHHHHSC------------------------------------C---TTCEEEEES
T ss_pred C--EE-cCCCCCCCcHHHHHHHHHHHHHhCC------------------------------------c---CCcEEEEEC
Confidence 4 33 45445788873 2233444455441 1 122788899
Q ss_pred ecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHH----HHHHHHcC
Q 011969 267 SWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESY----EEKIRRLR 340 (474)
Q Consensus 267 ~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~----~~~~~~l~ 340 (474)
-. ..=..-++.++..+ ++++.++|.... .+++ ++.+++.|
T Consensus 163 D~--~rva~Sl~~~~~~~--------------------------------g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g 208 (315)
T 1pvv_A 163 DG--NNVAHSLMIAGTKL--------------------------------GADVVVATPEGYEPDEKVIKWAEQNAAESG 208 (315)
T ss_dssp CC--CHHHHHHHHHHHHT--------------------------------TCEEEEECCTTCCCCHHHHHHHHHHHHHHT
T ss_pred CC--cchHHHHHHHHHHC--------------------------------CCEEEEECCccccCCHHHHHHHHHHHHHcC
Confidence 86 33334455555443 578999995422 1233 33344665
Q ss_pred CCcEEEecCCCCcccHHHHHhcccEEEeec
Q 011969 341 LKRVAFRTMWLSAEDYPLLLGSADLGVCLH 370 (474)
Q Consensus 341 l~~V~f~g~~v~~~~~~~~l~~adv~v~~~ 370 (474)
. .+.+. .++.+.+..||++....
T Consensus 209 ~-~~~~~------~d~~eav~~aDvvy~~~ 231 (315)
T 1pvv_A 209 G-SFELL------HDPVKAVKDADVIYTDV 231 (315)
T ss_dssp C-EEEEE------SCHHHHTTTCSEEEECC
T ss_pred C-eEEEE------eCHHHHhCCCCEEEEcc
Confidence 2 34443 67788899999999843
No 110
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=36.00 E-value=1.3e+02 Score=24.58 Aligned_cols=107 Identities=12% Similarity=0.104 Sum_probs=67.0
Q ss_pred CEEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHh-----c
Q 011969 317 RLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG-----C 388 (474)
Q Consensus 317 ~~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama-----~ 388 (474)
..+++|+.+.+. .+.+.+..++.|. .|.... +.++....+.. .|++++=. .....-|..+++.+. .
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~-~v~~~~---~~~~al~~l~~~~~dlii~D~--~l~~~~g~~~~~~lr~~~~~~ 80 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGY-QTEHVR---NGREAVRFLSLTRPDLIISDV--LMPEMDGYALCRWLKGQPDLR 80 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTC-EEEEES---SHHHHHHHHTTCCCSEEEEES--CCSSSCHHHHHHHHHHSTTTT
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCC-EEEEeC---CHHHHHHHHHhCCCCEEEEeC--CCCCCCHHHHHHHHHhCCCcC
Confidence 467888886543 3455666666664 343332 35666666654 58888732 222234567777664 4
Q ss_pred CCcEEEecc-c---ccccccccCCcEEEeC--CHHHHHHHHHHHHhC
Q 011969 389 GLPVCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 389 G~PVia~~~-~---~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
.+|||.... . ...+.+..|..+++.. +.++|...|..+++.
T Consensus 81 ~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 127 (154)
T 3gt7_A 81 TIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSG 127 (154)
T ss_dssp TSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 678887542 2 2334455677888885 699999999999875
No 111
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=35.73 E-value=3.1e+02 Score=26.51 Aligned_cols=166 Identities=16% Similarity=0.100 Sum_probs=91.3
Q ss_pred CChhHHHHHHHHHhhCCCcEEE-EecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeC--HHHHHHHHHHhCC
Q 011969 111 PSVPTLVAVKWASSLRRSAFIV-DWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVT--QAMQHELAQNWGI 187 (474)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~i~-~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS--~~~~~~l~~~~~~ 187 (474)
|+.-|-...-.+.+..|..+++ +..+. +.++.-.+.-.. +.+.+++|.+++=+ +...+++.+..+.
T Consensus 49 ~STRTR~SFe~A~~~LGg~~i~l~~~~s-------s~~kgEsl~DTa----rvls~~~D~iviR~~~~~~~~~lA~~~~v 117 (307)
T 2i6u_A 49 NSTRTRFSFELGIAQLGGHAVVVDSGST-------QLGRDETLQDTA----KVLSRYVDAIVWRTFGQERLDAMASVATV 117 (307)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEEGGGS-------GGGGTCCHHHHH----HHHHHHEEEEEEECSSHHHHHHHHHHCSS
T ss_pred CCcchHHHHHHHHHHcCCeEEEECCccc-------cCCCCCCHHHHH----HHHHHhCCEEEEecCChhHHHHHHhhCCC
Confidence 3455555555555555555443 32222 234444444333 34445678877654 4555566665444
Q ss_pred ceEEEeCCCCCCCCCCC-hHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEEEe
Q 011969 188 KATVLYDQPPEFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVSST 266 (474)
Q Consensus 188 ~~~vi~n~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G 266 (474)
+ || |+....+||+. .-+-..+++++| .-.-+.+.|+|
T Consensus 118 P--VI-Na~~~~~HPtQaLaDl~Ti~e~~g---------------------------------------~l~gl~va~vG 155 (307)
T 2i6u_A 118 P--VI-NALSDEFHPCQVLADLQTIAERKG---------------------------------------ALRGLRLSYFG 155 (307)
T ss_dssp C--EE-ESCCSSCCHHHHHHHHHHHHHHHS---------------------------------------CCTTCEEEEES
T ss_pred C--EE-cCCCCCcCccHHHHHHHHHHHHhC---------------------------------------CcCCeEEEEEC
Confidence 3 33 55567788873 223344445544 11123788999
Q ss_pred ecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHH----HHHHHHcC
Q 011969 267 SWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESY----EEKIRRLR 340 (474)
Q Consensus 267 ~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~----~~~~~~l~ 340 (474)
-. ...=..-++.++..+ ++++.++|.... .+++ ++.+++.|
T Consensus 156 D~-~~rva~Sl~~~~~~~--------------------------------g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G 202 (307)
T 2i6u_A 156 DG-ANNMAHSLLLGGVTA--------------------------------GIHVTVAAPEGFLPDPSVRAAAERRAQDTG 202 (307)
T ss_dssp CT-TSHHHHHHHHHHHHT--------------------------------TCEEEEECCTTSCCCHHHHHHHHHHHHHHT
T ss_pred CC-CcCcHHHHHHHHHHC--------------------------------CCEEEEECCccccCCHHHHHHHHHHHHHcC
Confidence 86 333344555555543 578999995432 1223 33344665
Q ss_pred CCcEEEecCCCCcccHHHHHhcccEEEee
Q 011969 341 LKRVAFRTMWLSAEDYPLLLGSADLGVCL 369 (474)
Q Consensus 341 l~~V~f~g~~v~~~~~~~~l~~adv~v~~ 369 (474)
. .+.+. .++.+.+..||++...
T Consensus 203 ~-~~~~~------~d~~eav~~aDvvy~~ 224 (307)
T 2i6u_A 203 A-SVTVT------ADAHAAAAGADVLVTD 224 (307)
T ss_dssp C-CEEEE------SCHHHHHTTCSEEEEC
T ss_pred C-eEEEE------ECHHHHhcCCCEEEec
Confidence 3 34443 6778889999999984
No 112
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=35.68 E-value=94 Score=28.83 Aligned_cols=57 Identities=16% Similarity=0.087 Sum_probs=29.2
Q ss_pred CCceEEEEEeCCCCCCchHHHHHHHHHhh-CCCeEEEEecC-CCCCCcceeccCCeEEEEee
Q 011969 3 RRGRACVVVLGDLGRSPRMQYQALSLARQ-MSLEVDVVAYG-GSKPHAAILEHPSIHIHTMT 62 (474)
Q Consensus 3 ~~~~~~i~~~~~~g~~~r~~~~a~~l~~~-~g~eV~Vv~~~-~~~~~~~~~~~~gi~i~~~~ 62 (474)
+++++.++..|. | .-.+.....+.+. .+++|..|... ......+.....||.++.++
T Consensus 21 ~~~rI~~l~SG~-g--~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~A~~~gIp~~~~~ 79 (229)
T 3auf_A 21 HMIRIGVLISGS-G--TNLQAILDGCREGRIPGRVAVVISDRADAYGLERARRAGVDALHMD 79 (229)
T ss_dssp TCEEEEEEESSC-C--HHHHHHHHHHHTTSSSEEEEEEEESSTTCHHHHHHHHTTCEEEECC
T ss_pred CCcEEEEEEeCC-c--HHHHHHHHHHHhCCCCCeEEEEEcCCCchHHHHHHHHcCCCEEEEC
Confidence 455677766664 1 2223333444443 24676544433 22222244567799998876
No 113
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=35.56 E-value=1.7e+02 Score=23.55 Aligned_cols=110 Identities=13% Similarity=0.067 Sum_probs=68.0
Q ss_pred CCCEEEEEEeCCCC-hHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHh--cccEEEeeccCCCCCCCchHHHHHHh---
Q 011969 315 YPRLLFIITGKGPD-KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLG--SADLGVCLHTSSSGLDLPMKVVDMFG--- 387 (474)
Q Consensus 315 ~~~~~l~ivG~g~~-~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~--~adv~v~~~~~s~~e~~p~kv~Eama--- 387 (474)
.+..+++|+.+.+. .+.+.+..++.+. ..|.... +.++....+. ..|++++=.. ....-|..+++.+.
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~---~~~~a~~~l~~~~~dlii~d~~--l~~~~g~~~~~~l~~~~ 87 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEAD---DGAAALELIKAHLPDVALLDYR--MPGMDGAQVAAAVRSYE 87 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEES---SHHHHHHHHHHHCCSEEEEETT--CSSSCHHHHHHHHHHTT
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeC---CHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhcC
Confidence 46788999986543 3556666666663 2232332 3566666554 3688887321 22234556666554
Q ss_pred cCCcEEEecc-c---ccccccccCCcEEEeC--CHHHHHHHHHHHHhC
Q 011969 388 CGLPVCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 388 ~G~PVia~~~-~---~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
..+|||.... . ...+.+..|..|++.. +.++|.++|..+++.
T Consensus 88 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 88 LPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred CCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 3577876542 2 2234566778899985 699999999999885
No 114
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=35.46 E-value=2e+02 Score=27.13 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=59.3
Q ss_pred CEEEEEEeCCCC--hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccC--CCCCC--CchHHHHHHh---
Q 011969 317 RLLFIITGKGPD--KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTS--SSGLD--LPMKVVDMFG--- 387 (474)
Q Consensus 317 ~~~l~ivG~g~~--~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~--s~~e~--~p~kv~Eama--- 387 (474)
.+.=+|+.+-|. .+++.+.++++|++.|.+...--+.+.+..+.+.++-|+..... ..|.. ++..+.|.+.
T Consensus 116 GvdG~IipDLP~eE~~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v~~vr 195 (252)
T 3tha_A 116 GICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEIR 195 (252)
T ss_dssp TEEEEECTTCCGGGCHHHHHHHHHTTCEECEEEETTSCHHHHHHHHTTCCSCEEEECCSCSSSCSHHHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhCCCeEEEEecCCCCCcccCCCHHHHHHHHHHH
Confidence 577788887664 46788899999998787776634467788888888655553221 12322 2222333333
Q ss_pred --cCCcEEEec-cc---ccccccccCCcEEEeCC
Q 011969 388 --CGLPVCAVS-YS---CIEELVKVDKNGLLFSS 415 (474)
Q Consensus 388 --~G~PVia~~-~~---~~~e~v~~~~~G~l~~~ 415 (474)
..+||++-- +. ...+ +...-.|+++.+
T Consensus 196 ~~~~~Pv~vGfGIst~e~a~~-~~~~ADGVIVGS 228 (252)
T 3tha_A 196 SFTNLPIFVGFGIQNNQDVKR-MRKVADGVIVGT 228 (252)
T ss_dssp TTCCSCEEEESSCCSHHHHHH-HTTTSSEEEECH
T ss_pred HhcCCcEEEEcCcCCHHHHHH-HHhcCCEEEECH
Confidence 578988742 11 1122 334567888865
No 115
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=35.43 E-value=68 Score=25.92 Aligned_cols=110 Identities=8% Similarity=0.013 Sum_probs=65.4
Q ss_pred CCCEEEEEEeCCCC-hHHHHHHHHHcC-CCcEEEecCCCCcccHHHHH---hcccEEEeeccCCCCCCCchHHHHHHh--
Q 011969 315 YPRLLFIITGKGPD-KESYEEKIRRLR-LKRVAFRTMWLSAEDYPLLL---GSADLGVCLHTSSSGLDLPMKVVDMFG-- 387 (474)
Q Consensus 315 ~~~~~l~ivG~g~~-~~~~~~~~~~l~-l~~V~f~g~~v~~~~~~~~l---~~adv~v~~~~~s~~e~~p~kv~Eama-- 387 (474)
.+..+++|+.+.+. ...+.+..++.| ..-+.+... .+.+..+. ...|++++=.. ....-|..+++.+.
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~---~~~~~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~ 92 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGR---AAQIVQRTDGLDAFDILMIDGA--ALDTAELAAIEKLSRL 92 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCC---HHHHTTCHHHHTTCSEEEEECT--TCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCH---HHHHHHHHhcCCCCCEEEEeCC--CCCccHHHHHHHHHHh
Confidence 35678888886553 355667777776 433333322 33444443 45788888321 12222445555543
Q ss_pred -cCCcEEEecc-c---ccccccccCCcEEEeC--CHHHHHHHHHHHHhC
Q 011969 388 -CGLPVCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 388 -~G~PVia~~~-~---~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
..+|||.... . ...+.+..|..+++.. +.++|..+|..+++.
T Consensus 93 ~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 93 HPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp CTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 3678887542 2 2234455677888875 699999999998874
No 116
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=34.84 E-value=1.2e+02 Score=29.67 Aligned_cols=171 Identities=8% Similarity=-0.028 Sum_probs=93.8
Q ss_pred CCChhHHHHHHHHHhhCCCcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEe--CHHHHHHHHHHh-C
Q 011969 110 PPSVPTLVAVKWASSLRRSAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCV--TQAMQHELAQNW-G 186 (474)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~v--S~~~~~~l~~~~-~ 186 (474)
-|+.-|-...-.+.+..|..+++---...+ .+.++.-.+ .-.-+.+.+++|.+++= .+...+.+.+.- +
T Consensus 50 e~STRTR~SFe~A~~~LGg~~i~l~~~~~~----S~~~kgEsl----~DTarvls~~~D~iviR~~~~~~~~~la~~~~~ 121 (310)
T 3csu_A 50 EASTRTRLSFETSMHRLGASVVGFSDSANT----SLGKKGETL----ADTISVISTYVDAIVMRHPQEGAARLATEFSGN 121 (310)
T ss_dssp SCCHHHHHHHHHHHHTTTCEEEEESCC---------CCSHHHH----HHHHHHHTTTCSEEEEEESSTTHHHHHHHHCTT
T ss_pred CCCccHHHHHHHHHHHhCCeEEEeCCCccc----hhhccCCcH----HHHHHHHHHhCCEEEEECCChhHHHHHHHhcCC
Confidence 345666655555566566554442111100 012222222 23345666788987764 455666777754 4
Q ss_pred CceEEEeCCCC-CCCCCCC-hHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEE
Q 011969 187 IKATVLYDQPP-EFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVS 264 (474)
Q Consensus 187 ~~~~vi~n~~~-~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 264 (474)
.+ | .|+.+ ..+||+. .-+-..+++++|. + .-+.+.|
T Consensus 122 vP--V-INag~G~~~HPtQaLaDl~Ti~e~~g~------------------------------------l---~gl~va~ 159 (310)
T 3csu_A 122 VP--V-LNAGDGSNQHPTQTLLDLFTIQETQGR------------------------------------L---DNLHVAM 159 (310)
T ss_dssp CC--E-EEEEETTSCCHHHHHHHHHHHHHHHSC------------------------------------S---SSCEEEE
T ss_pred CC--E-EcCccCCCCCchHHHHHHHHHHHHhCC------------------------------------c---CCcEEEE
Confidence 44 3 35433 6688873 2233444555541 1 1137889
Q ss_pred EeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHHHHHHHHcCCC
Q 011969 265 STSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESYEEKIRRLRLK 342 (474)
Q Consensus 265 ~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~~~~~~~l~l~ 342 (474)
+|-.....=..-++.++.. .+++++.++|.... .+.+.+.+++.|.
T Consensus 160 vGD~~~~rva~Sl~~~~~~-------------------------------~~g~~v~~~~P~~~~~~~~~~~~~~~~g~- 207 (310)
T 3csu_A 160 VGDLKYGRTVHSLTQALAK-------------------------------FDGNRFYFIAPDALAMPQYILDMLDEKGI- 207 (310)
T ss_dssp ESCTTTCHHHHHHHHHHHT-------------------------------SSSCEEEEECCGGGCCCHHHHHHHHHTTC-
T ss_pred ECCCCCCchHHHHHHHHHh-------------------------------CCCCEEEEECCcccccCHHHHHHHHHcCC-
Confidence 9986554445556666655 35789999995321 2345566666663
Q ss_pred cEEEecCCCCcccHHHHHhcccEEEe
Q 011969 343 RVAFRTMWLSAEDYPLLLGSADLGVC 368 (474)
Q Consensus 343 ~V~f~g~~v~~~~~~~~l~~adv~v~ 368 (474)
.+.+. .++.+.+..||++..
T Consensus 208 ~~~~~------~d~~eav~~aDvvyt 227 (310)
T 3csu_A 208 AWSLH------SSIEEVMAEVDILYM 227 (310)
T ss_dssp CEEEC------SCGGGTTTTCSEEEE
T ss_pred eEEEE------cCHHHHhcCCCEEEE
Confidence 34333 455677899999988
No 117
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=33.95 E-value=3.4e+02 Score=26.47 Aligned_cols=168 Identities=20% Similarity=0.207 Sum_probs=93.6
Q ss_pred CCCChhHHHHHHHHHhhCCCcEEEE-ecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeC--HHHHHHHHHHh
Q 011969 109 NPPSVPTLVAVKWASSLRRSAFIVD-WHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVT--QAMQHELAQNW 185 (474)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~i~~-~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS--~~~~~~l~~~~ 185 (474)
.-|+.-|-...-.+.+..|..+++- ..+. +.++.-.+.- .-+.+.+++|.+++=. +...+++.+..
T Consensus 66 ~epSTRTR~SFE~A~~~LGg~~i~l~~~~s-------s~~kgEsl~D----TarvLs~~~D~iviR~~~~~~~~~lA~~~ 134 (325)
T 1vlv_A 66 EKRSTRTRLAFETAFAEEGGHPIFLSPNDI-------HLGAKESLED----TARVLGRMVDAIMFRGYKQETVEKLAEYS 134 (325)
T ss_dssp SSCCHHHHHHHHHHHHHTTCEEEEECTTTC-------CTTTSSCHHH----HHHHHHTTCSEEEEESSCHHHHHHHHHHH
T ss_pred ccCCcchHHHHHHHHHHcCCeEEEECCccc-------cCCCCcCHHH----HHHHHHHhCCEEEEECCChHHHHHHHHhC
Confidence 3345666655666666666554442 2222 3344444432 3345566789887754 45566677655
Q ss_pred CCceEEEeCCCCCCCCCCC-hHHHHHHHHhhhhccCCCCCccccccccccCCcCcchhhhhcccccccccCCCCCeEEEE
Q 011969 186 GIKATVLYDQPPEFFHPTS-LEEKHELFCRLNKILHQPLGVQDCVSNAGMEGQKADETIFTSLAGIDVFLKPNRPALVVS 264 (474)
Q Consensus 186 ~~~~~vi~n~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 264 (474)
+++ | .|+.+..+||+. .-+-..+++.+|. + .-+.+.|
T Consensus 135 ~vP--V-INa~~~~~HPtQaLaDl~Ti~e~~g~------------------------------------l---~gl~va~ 172 (325)
T 1vlv_A 135 GVP--V-YNGLTDEFHPTQALADLMTIEENFGR------------------------------------L---KGVKVVF 172 (325)
T ss_dssp CSC--E-EESCCSSCCHHHHHHHHHHHHHHHSC------------------------------------S---TTCEEEE
T ss_pred CCC--E-EeCCCCCCCcHHHHHHHHHHHHHhCC------------------------------------c---CCcEEEE
Confidence 554 3 356556788873 2233444455441 1 1127888
Q ss_pred EeecccCCCHHHHHHHHHHhHHHHhhhhccCCCchhhHhHhhhcCCccccCCCEEEEEEeCCCC--hHHH----HHHHHH
Q 011969 265 STSWTPDEDFGILLEAALMYDRRVAAILNEDDSTNEEVFLKEISDGKQYLYPRLLFIITGKGPD--KESY----EEKIRR 338 (474)
Q Consensus 265 ~G~l~~~k~~~~Li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ivG~g~~--~~~~----~~~~~~ 338 (474)
+|-. ...=..-++.++..+ ++++.++|.... .+++ ++.+++
T Consensus 173 vGD~-~~rva~Sl~~~~~~~--------------------------------G~~v~~~~P~~~~p~~~~~~~~~~~a~~ 219 (325)
T 1vlv_A 173 MGDT-RNNVATSLMIACAKM--------------------------------GMNFVACGPEELKPRSDVFKRCQEIVKE 219 (325)
T ss_dssp ESCT-TSHHHHHHHHHHHHT--------------------------------TCEEEEESCGGGCCCHHHHHHHHHHHHH
T ss_pred ECCC-CcCcHHHHHHHHHHC--------------------------------CCEEEEECCccccCCHHHHHHHHHHHHH
Confidence 9884 223334445555442 578999995321 1223 334446
Q ss_pred cCCCcEEEecCCCCcccHHHHHhcccEEEee
Q 011969 339 LRLKRVAFRTMWLSAEDYPLLLGSADLGVCL 369 (474)
Q Consensus 339 l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~ 369 (474)
.|. .+.+. .++.+.+..||++...
T Consensus 220 ~G~-~v~~~------~d~~eav~~aDvvyt~ 243 (325)
T 1vlv_A 220 TDG-SVSFT------SNLEEALAGADVVYTD 243 (325)
T ss_dssp HCC-EEEEE------SCHHHHHTTCSEEEEC
T ss_pred cCC-eEEEE------cCHHHHHccCCEEEec
Confidence 652 34443 6778889999999984
No 118
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=33.84 E-value=3.7e+02 Score=26.80 Aligned_cols=117 Identities=9% Similarity=0.098 Sum_probs=70.8
Q ss_pred CEEEEEEeCCCChHHHHHHHHHcCC-CcEEEecCC-----CCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcC-
Q 011969 317 RLLFIITGKGPDKESYEEKIRRLRL-KRVAFRTMW-----LSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCG- 389 (474)
Q Consensus 317 ~~~l~ivG~g~~~~~~~~~~~~l~l-~~V~f~g~~-----v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G- 389 (474)
+....++...... .-.+.+++|.- -.|...|.- .+.++...+++..-..++.-.+....-..-|+.+|+.+|
T Consensus 181 k~v~wvvSnc~~~-~R~~~~~~L~k~i~Vd~~G~c~~~~~~~~~~~~~~l~~YKFyLafENs~c~dYvTEK~~~al~~g~ 259 (371)
T 2nzw_A 181 GFASFVASNPNAP-IRNAFYDALNSIEPVTGGGSVRNTLGYNVKNKNEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHT 259 (371)
T ss_dssp EEEEECCSCCCCH-HHHHHHHHHTTTSCCEECSSTTCCSSSCCSCHHHHHTTEEEEEEECSSCCTTCCCTHHHHHHHTTC
T ss_pred eEEEEEEeCCCcH-HHHHHHHHHhCcCCEeeCCCccCCCCCccccHHHHHhcCcEEEEEeccCCCCcccHHHHHHHhCCe
Confidence 3444455433322 12234444432 356666641 134678888999998888644333333566999999999
Q ss_pred CcEEEecccccccccccCCcEEE-e---CCHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 011969 390 LPVCAVSYSCIEELVKVDKNGLL-F---SSSSELADQLLMLFKGFPDDSDVLKKLR 441 (474)
Q Consensus 390 ~PVia~~~~~~~e~v~~~~~G~l-~---~~~~~la~~i~~l~~~~~~~~~~~~~~~ 441 (474)
+||+- ..+.+.+++. . +.++ + +++++|++.|..|-++ ++.+.++-
T Consensus 260 VPI~~-G~~~~~~~~P-p-~SfI~~~dF~s~~~La~yL~~L~~n----~~~Y~~y~ 308 (371)
T 2nzw_A 260 IPIYW-GSPSVAKDFN-P-KSFVNVHDFKNFDEAIDYIKYLHTH----KNAYLDML 308 (371)
T ss_dssp EEEEE-SCTTGGGTSC-G-GGSEEGGGSSSHHHHHHHHHHHHTC----HHHHHHHH
T ss_pred EEEEE-CCCchhhhCC-C-CceEEcccCCCHHHHHHHHHHHhcC----HHHHHHHH
Confidence 55554 3345556553 2 4444 3 3699999999999884 66666544
No 119
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=33.76 E-value=1.3e+02 Score=29.00 Aligned_cols=100 Identities=13% Similarity=0.087 Sum_probs=58.2
Q ss_pred CcEEEecCCCCcc--cHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccccccccc-ccCCcEE-EeCCHH
Q 011969 342 KRVAFRTMWLSAE--DYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELV-KVDKNGL-LFSSSS 417 (474)
Q Consensus 342 ~~V~f~g~~v~~~--~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v-~~~~~G~-l~~~~~ 417 (474)
++|.|.|..+|.+ .....+..||++++.-++-.-..+. .+.++...|.|+|..+-......- .+...-+ +..+.+
T Consensus 175 P~IV~FGE~lp~~~~~~~~~~~~aDlllviGTSl~V~Paa-~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~~ 253 (285)
T 3glr_A 175 PDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFA-SLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVV 253 (285)
T ss_dssp EEECCTTSBCCGGGGGHHHHHHHCSEEEEESCCCCEETTG-GGGGSSCTTSCEEEEESSCCTHHHHSCCTTEEEEESCHH
T ss_pred CcEEEeCCcCCHHHHHHHHHHhcCCEEEEeCCCCccccHH-HHHHHHhCCCcEEEECCCCcCccccCCCCccEEEcCCHH
Confidence 5788888877753 3345678899999963333222222 234566678999888754433211 1122223 335777
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 011969 418 ELADQLLMLFKGFPDDSDVLKKLRNGTLE 446 (474)
Q Consensus 418 ~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 446 (474)
+....|.+.+. ..++++.+-+...+
T Consensus 254 ~~~~~L~~~lg----w~~el~~~~~~~~~ 278 (285)
T 3glr_A 254 HGVESLVELLG----WTEEMRDLVQRETG 278 (285)
T ss_dssp HHHHHHHHHHT----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC----CHHHHHHHHHhhHh
Confidence 77777777765 35566665555443
No 120
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=33.51 E-value=1.7e+02 Score=22.86 Aligned_cols=108 Identities=9% Similarity=0.113 Sum_probs=66.6
Q ss_pred CEEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHh---cccEEEeeccCCCCCCCchHHHHHHhc----
Q 011969 317 RLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLG---SADLGVCLHTSSSGLDLPMKVVDMFGC---- 388 (474)
Q Consensus 317 ~~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~---~adv~v~~~~~s~~e~~p~kv~Eama~---- 388 (474)
..+++|+.+.+. .+.+.+..++.|...|..... ..+....+. ..|++++= ......-|..+++.+..
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~---~~~a~~~~~~~~~~dlvi~D--~~~p~~~g~~~~~~lr~~~~~ 79 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEH---GVEAWEKLDANADTKVLITD--WNMPEMNGLDLVKKVRSDSRF 79 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESS---HHHHHHHHHHCTTCCEEEEC--SCCSSSCHHHHHHHHHTSTTC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCC---HHHHHHHHHhCCCCCEEEEe--CCCCCCCHHHHHHHHHhcCCC
Confidence 356788876543 355666777777654554432 445444442 36887762 11223346677777653
Q ss_pred -CCcEEEecc-cc---cccccccCCcEEEeC--CHHHHHHHHHHHHhC
Q 011969 389 -GLPVCAVSY-SC---IEELVKVDKNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 389 -G~PVia~~~-~~---~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
.+|||.... .. ..+.+..|..+++.. ++++|.+.+..++..
T Consensus 80 ~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 80 KEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp TTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred CCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 578887543 22 234456677889985 699999999998864
No 121
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=33.43 E-value=1.2e+02 Score=28.98 Aligned_cols=86 Identities=13% Similarity=0.054 Sum_probs=47.6
Q ss_pred CcEEEecCCCCcccHH----------------HHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccccccccc-
Q 011969 342 KRVAFRTMWLSAEDYP----------------LLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELV- 404 (474)
Q Consensus 342 ~~V~f~g~~v~~~~~~----------------~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v- 404 (474)
++|.|.|.++|.+.+. .....||+++..-++-.-.++. .+.++...|.|+|..+......+-
T Consensus 175 P~vv~FGE~lp~~~~~~~~~~~~~l~~~~~a~~~~~~~DlllviGTSl~V~Pa~-~l~~~~~~~~~~v~IN~~~~~~~~~ 253 (289)
T 1q1a_A 175 PAIVFFGEDLPDSFSETWLNDSEWLREKITTSGKHPQQPLVIVVGTSLAVYPFA-SLPEEIPRKVKRVLCNLETVGDFKA 253 (289)
T ss_dssp EEECCBTSBCCHHHHHHHHHHHHHHHHHHHC----CCCCEEEEESCCCCEETTT-HHHHHSCTTSEEEEESSSCCTHHHH
T ss_pred CCEEEcCCCCCHHHHHHHHHhhhhhhhhhhHHHHhccCCEEEEEccCCChhhHH-HHHHHHhcCCCEEEEECCCcccCCC
Confidence 5777888777765432 2367899999963332222222 355665669999998865442110
Q ss_pred ccCCcEEEe-CCHHHHHHHHHHHHh
Q 011969 405 KVDKNGLLF-SSSSELADQLLMLFK 428 (474)
Q Consensus 405 ~~~~~G~l~-~~~~~la~~i~~l~~ 428 (474)
......+.+ .+.++....|...+.
T Consensus 254 ~~~~~d~~i~~~~~~~l~~l~~~l~ 278 (289)
T 1q1a_A 254 NKRPTDLIVHQYSDEFAEQLVEELG 278 (289)
T ss_dssp SCCTTCEEECCCHHHHHHHHHHHHT
T ss_pred CCcceeEEEeCCHHHHHHHHHHHcC
Confidence 111233444 477776666655544
No 122
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=32.50 E-value=1.4e+02 Score=26.16 Aligned_cols=69 Identities=10% Similarity=0.059 Sum_probs=40.9
Q ss_pred CCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhccc---EEEeeccCCC--CCCCchHHHHHHhcCCcEEEec
Q 011969 326 GPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSAD---LGVCLHTSSS--GLDLPMKVVDMFGCGLPVCAVS 396 (474)
Q Consensus 326 g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~ad---v~v~~~~~s~--~e~~p~kv~Eama~G~PVia~~ 396 (474)
+.....+.+.++++|.+ +.......+.+++...+...| +++.| -+.. ..++-..+++++..|+||++..
T Consensus 10 ~s~~~~i~~~l~~~G~~-~~v~~~~~~~~~i~~~l~~~~~~~iil~g-Gpg~~~~~~~~~~l~~~~~~~~PilGIC 83 (192)
T 1i1q_B 10 DSFTWNLADQLRTNGHN-VVIYRNHIPAQTLIDRLATMKNPVLMLSP-GPGVPSEAGCMPELLTRLRGKLPIIGIC 83 (192)
T ss_dssp CSSHHHHHHHHHHTTCE-EEEEETTSCSHHHHHHHTTCSSEEEEECC-CSSCGGGSTTHHHHHHHHBTTBCEEEET
T ss_pred ccHHHHHHHHHHHCCCe-EEEEECCCCHHHHHHHhhhccCCeEEECC-CCcCchhCchHHHHHHHHhcCCCEEEEC
Confidence 34556678888888864 333333134466666655433 55553 1111 1234456888888999999875
No 123
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=32.01 E-value=2e+02 Score=23.22 Aligned_cols=106 Identities=9% Similarity=0.012 Sum_probs=63.4
Q ss_pred EEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHh---cCCc
Q 011969 318 LLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG---CGLP 391 (474)
Q Consensus 318 ~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama---~G~P 391 (474)
.+++|+.+.+. ...+.+..+..|. .|.... +.++....+.. .|++++-.. ....-|..+++.+. .++|
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~-~v~~~~---~~~~a~~~l~~~~~dliild~~--l~~~~g~~~~~~l~~~~~~~p 77 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAGF-TVSSFA---SATEALAGLSADFAGIVISDIR--MPGMDGLALFRKILALDPDLP 77 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC-EEEEES---CHHHHHHTCCTTCCSEEEEESC--CSSSCHHHHHHHHHHHCTTSC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCc-EEEEEC---CHHHHHHHHHhCCCCEEEEeCC--CCCCCHHHHHHHHHhhCCCCC
Confidence 46777776543 3456666666665 344332 34555555443 588887321 22223455565553 4788
Q ss_pred EEEecc-c---ccccccccCCcEEEeC--CHHHHHHHHHHHHhC
Q 011969 392 VCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 392 Via~~~-~---~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
||.... . ...+.+..+..+++.. +.++|...|..++..
T Consensus 78 ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 78 MILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK 121 (155)
T ss_dssp EEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Confidence 887542 2 2334455677888875 699999999998874
No 124
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=32.01 E-value=3.3e+02 Score=25.73 Aligned_cols=99 Identities=11% Similarity=0.104 Sum_probs=59.6
Q ss_pred CEEEEEEeCCCCh--HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccC--CCC--CCCchHHHHHHh---
Q 011969 317 RLLFIITGKGPDK--ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTS--SSG--LDLPMKVVDMFG--- 387 (474)
Q Consensus 317 ~~~l~ivG~g~~~--~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~--s~~--e~~p~kv~Eama--- 387 (474)
.+.-+|+.+-|.. +++.+.+++.|++.|.+...--+.+.+..+.+.+.=|+...+. ..| ..++..+.|.+.
T Consensus 125 GvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr 204 (271)
T 3nav_A 125 GVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQ 204 (271)
T ss_dssp TCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHHH
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHH
Confidence 3556777766543 5788889999998787776623457788888888655553111 122 234555555443
Q ss_pred --cCCcEEEec-cc---ccccccccCCcEEEeCC
Q 011969 388 --CGLPVCAVS-YS---CIEELVKVDKNGLLFSS 415 (474)
Q Consensus 388 --~G~PVia~~-~~---~~~e~v~~~~~G~l~~~ 415 (474)
..+||++-- +. ...+.+..+-.|+++.+
T Consensus 205 ~~~~~Pv~vGfGIst~e~~~~~~~~gADgvIVGS 238 (271)
T 3nav_A 205 QFDAPPALLGFGISEPAQVKQAIEAGAAGAISGS 238 (271)
T ss_dssp HTTCCCEEECSSCCSHHHHHHHHHTTCSEEEESH
T ss_pred HhcCCCEEEECCCCCHHHHHHHHHcCCCEEEECH
Confidence 478988732 11 11224557788999876
No 125
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=31.80 E-value=1.7e+02 Score=28.12 Aligned_cols=69 Identities=14% Similarity=0.057 Sum_probs=46.8
Q ss_pred CCCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHhcCCcE
Q 011969 315 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGCGLPV 392 (474)
Q Consensus 315 ~~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama~G~PV 392 (474)
.|+++++-+-+ .+.+..++.+++++++++ ..++.+++.. .|+++.. +|.. .-.-.+.+|+.+|++|
T Consensus 46 ~~~~~lvav~d-~~~~~a~~~a~~~g~~~~--------y~d~~ell~~~~iDaV~I~-tP~~--~H~~~~~~al~aGkhV 113 (350)
T 4had_A 46 AENCVVTAIAS-RDLTRAREMADRFSVPHA--------FGSYEEMLASDVIDAVYIP-LPTS--QHIEWSIKAADAGKHV 113 (350)
T ss_dssp CSSEEEEEEEC-SSHHHHHHHHHHHTCSEE--------ESSHHHHHHCSSCSEEEEC-SCGG--GHHHHHHHHHHTTCEE
T ss_pred CCCeEEEEEEC-CCHHHHHHHHHHcCCCee--------eCCHHHHhcCCCCCEEEEe-CCCc--hhHHHHHHHHhcCCEE
Confidence 47888875554 456677888899886422 3567777765 6888883 2221 1123678999999999
Q ss_pred EEe
Q 011969 393 CAV 395 (474)
Q Consensus 393 ia~ 395 (474)
++=
T Consensus 114 l~E 116 (350)
T 4had_A 114 VCE 116 (350)
T ss_dssp EEC
T ss_pred EEe
Confidence 974
No 126
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=31.31 E-value=46 Score=31.81 Aligned_cols=75 Identities=11% Similarity=0.071 Sum_probs=47.4
Q ss_pred EEEEEEe-CCCChHHHHHHHHHcCCCcEEEecCCCC-----------------------cccHHHHHhcccEEEeeccCC
Q 011969 318 LLFIITG-KGPDKESYEEKIRRLRLKRVAFRTMWLS-----------------------AEDYPLLLGSADLGVCLHTSS 373 (474)
Q Consensus 318 ~~l~ivG-~g~~~~~~~~~~~~l~l~~V~f~g~~v~-----------------------~~~~~~~l~~adv~v~~~~~s 373 (474)
+++.|+| .|..-..+.+.+.+. +.+.+.+. ++ ..++..++..+|+.+-. +
T Consensus 8 ikV~V~Ga~G~MG~~i~~~l~~~--~~~eLv~~-~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDf---T 81 (272)
T 4f3y_A 8 MKIAIAGASGRMGRMLIEAVLAA--PDATLVGA-LDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDF---T 81 (272)
T ss_dssp EEEEESSTTSHHHHHHHHHHHHC--TTEEEEEE-BCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEEC---S
T ss_pred cEEEEECCCCHHHHHHHHHHHhC--CCCEEEEE-EEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEc---C
Confidence 6888888 676555555555443 24444443 11 35788888999999973 3
Q ss_pred CCCCCchHHHHHHhcCCcEEEeccc
Q 011969 374 SGLDLPMKVVDMFGCGLPVCAVSYS 398 (474)
Q Consensus 374 ~~e~~p~kv~Eama~G~PVia~~~~ 398 (474)
..+....-+..++..|+|+|....|
T Consensus 82 ~p~a~~~~~~~al~~G~~vVigTTG 106 (272)
T 4f3y_A 82 LPEGTLVHLDAALRHDVKLVIGTTG 106 (272)
T ss_dssp CHHHHHHHHHHHHHHTCEEEECCCC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCC
Confidence 2222223456788999999986544
No 127
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=30.93 E-value=2e+02 Score=23.53 Aligned_cols=107 Identities=6% Similarity=0.022 Sum_probs=64.8
Q ss_pred CEEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc----ccEEEeeccCCCCCCCchHHHHHHh---c
Q 011969 317 RLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS----ADLGVCLHTSSSGLDLPMKVVDMFG---C 388 (474)
Q Consensus 317 ~~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~----adv~v~~~~~s~~e~~p~kv~Eama---~ 388 (474)
..+++|+.+.+. .+.+.+..++.+..-+... -+.++....+.. .|++++=. .....-|..+++.+. .
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~---~~~~~al~~l~~~~~~~dliilD~--~l~~~~g~~~~~~lr~~~~ 110 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTA---ADGEEAVIKYKNHYPNIDIVTLXI--TMPKMDGITCLSNIMEFDK 110 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHTTCEEEEEE---SSHHHHHHHHHHHGGGCCEEEECS--SCSSSCHHHHHHHHHHHCT
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEE---CCHHHHHHHHHhcCCCCCEEEEec--cCCCccHHHHHHHHHhhCC
Confidence 357888886543 3556666777765333133 235666666654 48888721 122233555665543 4
Q ss_pred CCcEEEeccc----ccccccccCCcEEEeC--CHHHHHHHHHHHHh
Q 011969 389 GLPVCAVSYS----CIEELVKVDKNGLLFS--SSSELADQLLMLFK 428 (474)
Q Consensus 389 G~PVia~~~~----~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~ 428 (474)
.+|||..... ...+....+..+++.. +.++|.+.|..+++
T Consensus 111 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 111 NARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp TCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred CCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 6888875432 2334456677888885 68999999988764
No 128
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=30.26 E-value=2e+02 Score=22.90 Aligned_cols=90 Identities=11% Similarity=0.212 Sum_probs=52.1
Q ss_pred EEEEeCCCCh----HHHHHHHHHcCCC-cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHH--hcCCcE
Q 011969 320 FIITGKGPDK----ESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMF--GCGLPV 392 (474)
Q Consensus 320 l~ivG~g~~~----~~~~~~~~~l~l~-~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eam--a~G~PV 392 (474)
++++|.|-.. +.+++.+++.+++ .|.- .+..++...+..+|+.+.. +... +-..=++.. ..++||
T Consensus 8 lvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~----~~~~~~~~~~~~~D~Ii~t--~~l~--~~~~~~~~~~~~~~~pv 79 (109)
T 2l2q_A 8 LLVCGAGMSTSMLVQRIEKYAKSKNINATIEA----IAETRLSEVVDRFDVVLLA--PQSR--FNKKRLEEITKPKGIPI 79 (109)
T ss_dssp EEESSSSCSSCHHHHHHHHHHHHHTCSEEEEE----ECSTTHHHHTTTCSEEEEC--SCCS--SHHHHHHHHHHHHTCCE
T ss_pred EEECCChHhHHHHHHHHHHHHHHCCCCeEEEE----ecHHHHHhhcCCCCEEEEC--CccH--HHHHHHHHHhcccCCCE
Confidence 5666766332 5677778888874 3433 3467888888999998872 2222 112223333 258999
Q ss_pred EEecccccccccccCCcEEEeCCHHHHHHHHHHHHh
Q 011969 393 CAVSYSCIEELVKVDKNGLLFSSSSELADQLLMLFK 428 (474)
Q Consensus 393 ia~~~~~~~e~v~~~~~G~l~~~~~~la~~i~~l~~ 428 (474)
+..+.-.. | .-|.+.+.+.+..+++
T Consensus 80 ~~I~~~~y---------~--~~d~~~vl~~i~~~l~ 104 (109)
T 2l2q_A 80 EIINTIDY---------G--TMNGEKVLQLAINAFN 104 (109)
T ss_dssp EECCHHHH---------H--HTCHHHHHHHHHHHHH
T ss_pred EEEChHHh---------c--cCCHHHHHHHHHHHHh
Confidence 88652111 0 1255666666666655
No 129
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=30.20 E-value=64 Score=28.78 Aligned_cols=70 Identities=11% Similarity=0.017 Sum_probs=43.8
Q ss_pred HHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccccc-ccccccC-CcE-EEeCCHHHHHHHHHHHHhC
Q 011969 357 PLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCI-EELVKVD-KNG-LLFSSSSELADQLLMLFKG 429 (474)
Q Consensus 357 ~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~-~e~v~~~-~~G-~l~~~~~~la~~i~~l~~~ 429 (474)
..+...||.+|.. +. +.|-=..+.|++..++||++.+..+. ..++.+. ... .+++|++++.+.|.+.++.
T Consensus 102 ~~m~~~sda~Ivl--pG-g~GTL~E~~~al~~~kpV~~l~~~~~~~gfi~~~~~~~i~~~~~~~e~~~~l~~~~~~ 174 (176)
T 2iz6_A 102 NINALSSNVLVAV--GM-GPGTAAEVALALKAKKPVVLLGTQPEAEKFFTSLDAGLVHVAADVAGAIAAVKQLLAK 174 (176)
T ss_dssp CCCGGGCSEEEEE--SC-CHHHHHHHHHHHHTTCCEEEESCCHHHHHHHHHHCTTTEEEESSHHHHHHHHHHHHHC
T ss_pred HHHHHhCCEEEEe--cC-CccHHHHHHHHHHhCCcEEEEcCcccccccCChhhcCeEEEcCCHHHHHHHHHHHHHh
Confidence 3445678988885 32 21122378889999999999875221 1122211 223 3446899999999888763
No 130
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=29.76 E-value=3e+02 Score=24.56 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=19.4
Q ss_pred CCCCchHHHHHHHHHhhCCCeEEEEecCC
Q 011969 15 LGRSPRMQYQALSLARQMSLEVDVVAYGG 43 (474)
Q Consensus 15 ~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~ 43 (474)
.|-+.-....|..|+++ |+.|.++-.+.
T Consensus 14 vGKTt~a~~LA~~la~~-g~~VlliD~D~ 41 (260)
T 3q9l_A 14 VGKTTSSAAIATGLAQK-GKKTVVIDFAI 41 (260)
T ss_dssp SSHHHHHHHHHHHHHHT-TCCEEEEECCC
T ss_pred CcHHHHHHHHHHHHHhC-CCcEEEEECCC
Confidence 33333445677888886 99999997553
No 131
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=29.52 E-value=2.2e+02 Score=22.88 Aligned_cols=106 Identities=13% Similarity=0.061 Sum_probs=67.2
Q ss_pred EEEEEEeCCCC-hHHHHHHHHHcCCC-cEEEecCCCCcccHHHHHh-----------cccEEEeeccCCCCCCCchHHHH
Q 011969 318 LLFIITGKGPD-KESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLG-----------SADLGVCLHTSSSGLDLPMKVVD 384 (474)
Q Consensus 318 ~~l~ivG~g~~-~~~~~~~~~~l~l~-~V~f~g~~v~~~~~~~~l~-----------~adv~v~~~~~s~~e~~p~kv~E 384 (474)
.+++|+.+.+. ...+.+..++.+.. .|..... .++....+. ..|++++=. .....-|..+++
T Consensus 5 ~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~---~~~al~~l~~~~~~~~~~~~~~dliilD~--~l~~~~g~~~~~ 79 (152)
T 3heb_A 5 VTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTD---GTSALNYLFGDDKSGRVSAGRAQLVLLDL--NLPDMTGIDILK 79 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESS---HHHHHHHHHCTTSSSGGGTTCBEEEEECS--BCSSSBHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCC---HHHHHHHHhccccccccccCCCCEEEEeC--CCCCCcHHHHHH
Confidence 57788876543 35667777777763 5665543 677777763 468888721 122334667777
Q ss_pred HHhc-----CCcEEEeccc----ccccccccCCcEEEeC--CHHHHHHHHHHHHh
Q 011969 385 MFGC-----GLPVCAVSYS----CIEELVKVDKNGLLFS--SSSELADQLLMLFK 428 (474)
Q Consensus 385 ama~-----G~PVia~~~~----~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~ 428 (474)
.+.. ++|||..... ...+....+..+++.. +.++|.++|..+..
T Consensus 80 ~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 134 (152)
T 3heb_A 80 LVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGL 134 (152)
T ss_dssp HHHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 6654 6788875432 2234456677888885 68888888888754
No 132
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=28.97 E-value=4.7e+02 Score=26.49 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=39.4
Q ss_pred HhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEec--ccccccccccCCcEEEeCCHHHHHHHHHHHHh
Q 011969 360 LGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVS--YSCIEELVKVDKNGLLFSSSSELADQLLMLFK 428 (474)
Q Consensus 360 l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~--~~~~~e~v~~~~~G~l~~~~~~la~~i~~l~~ 428 (474)
+..+|+++.. +..-|.-=+..+-|-.+|.+=+.+. .+...++++..+...+++.....+..|.+.+.
T Consensus 298 i~~~D~~ia~--T~~De~Ni~~~llAk~~gv~kvIa~vn~~~~~~l~~~~gid~visp~~~~a~~I~~~i~ 366 (461)
T 4g65_A 298 IDQVDVFIAL--TNEDETNIMSAMLAKRMGAKKVMVLIQRGAYVDLVQGGVIDVAISPQQATISALLTHVR 366 (461)
T ss_dssp GGGCSEEEEC--CSCHHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHCSSSSCEEECHHHHHHHHHHHHHH
T ss_pred chhhcEEEEc--ccCcHHHHHHHHHHHHcCCccccccccccchhhhhhccccceeeCHHHHHHHHHHHHhh
Confidence 4678999983 2222322245566777887766654 45555666555555555555556666666554
No 133
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=28.91 E-value=84 Score=27.28 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=20.1
Q ss_pred CCCCch---HHHHHHHHHhhCCCeEEEEecCC
Q 011969 15 LGRSPR---MQYQALSLARQMSLEVDVVAYGG 43 (474)
Q Consensus 15 ~g~~~r---~~~~a~~l~~~~g~eV~Vv~~~~ 43 (474)
-||.+. ....|..|+++ |+.|.++-.+.
T Consensus 10 kgG~GKTt~a~~la~~la~~-g~~vlliD~D~ 40 (206)
T 4dzz_A 10 KGGSGKTTAVINIATALSRS-GYNIAVVDTDP 40 (206)
T ss_dssp STTSSHHHHHHHHHHHHHHT-TCCEEEEECCT
T ss_pred CCCccHHHHHHHHHHHHHHC-CCeEEEEECCC
Confidence 444444 45667888886 99999998664
No 134
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=28.70 E-value=2.2e+02 Score=22.53 Aligned_cols=106 Identities=8% Similarity=-0.053 Sum_probs=65.5
Q ss_pred EEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHh----cccEEEeeccCCCCCCCchHHHHHHh---cC
Q 011969 318 LLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLG----SADLGVCLHTSSSGLDLPMKVVDMFG---CG 389 (474)
Q Consensus 318 ~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~----~adv~v~~~~~s~~e~~p~kv~Eama---~G 389 (474)
.+++|+.+.+. .+.+.+..+..+. .|.... +.++....+. ..|++++=.. ....-|..+++.+. ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~-~v~~~~---~~~~a~~~~~~~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~ 77 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGN-EVLTAS---SSTEGLRIFTENCNSIDVVITDMK--MPKLSGMDILREIKKITPH 77 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC-EEEEES---SHHHHHHHHHHTTTTCCEEEEESC--CSSSCHHHHHHHHHHHCTT
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCc-eEEEeC---CHHHHHHHHHhCCCCCCEEEEeCC--CCCCcHHHHHHHHHHhCCC
Confidence 46777776543 3556666776664 343332 3566666665 5788887321 22233555555543 46
Q ss_pred CcEEEecc-cc---cccccccCCcEEEeC--CHHHHHHHHHHHHhC
Q 011969 390 LPVCAVSY-SC---IEELVKVDKNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 390 ~PVia~~~-~~---~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
+|||.... .. ..+.+..+..+++.. +.+++..+|..+++.
T Consensus 78 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 78 MAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp CEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 78887542 22 344566777888885 699999999998873
No 135
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=28.70 E-value=71 Score=26.08 Aligned_cols=70 Identities=10% Similarity=0.087 Sum_probs=42.4
Q ss_pred EEEEeCCCCh----HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHh--cCCcEE
Q 011969 320 FIITGKGPDK----ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFG--CGLPVC 393 (474)
Q Consensus 320 l~ivG~g~~~----~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama--~G~PVi 393 (474)
+++++.|-.. ..+++.+++.|++ +.... .+..++..++..+|++++. |-.. +-..=++..+ .|+||.
T Consensus 10 lL~C~aGmSTsllv~km~~~a~~~gi~-v~i~a--~~~~~~~~~~~~~DvvLLg--PQV~--y~~~~ik~~~~~~~ipV~ 82 (108)
T 3nbm_A 10 LVLCAGSGTSAQLANAINEGANLTEVR-VIANS--GAYGAHYDIMGVYDLIILA--PQVR--SYYREMKVDAERLGIQIV 82 (108)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHTCS-EEEEE--EETTSCTTTGGGCSEEEEC--GGGG--GGHHHHHHHHTTTTCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCc-eEEEE--cchHHHHhhccCCCEEEEC--hHHH--HHHHHHHHHhhhcCCcEE
Confidence 4556666433 5677888888875 33322 1245677778899999983 2222 1223344443 489999
Q ss_pred Eec
Q 011969 394 AVS 396 (474)
Q Consensus 394 a~~ 396 (474)
..+
T Consensus 83 vI~ 85 (108)
T 3nbm_A 83 ATR 85 (108)
T ss_dssp ECC
T ss_pred EeC
Confidence 876
No 136
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=27.54 E-value=1.3e+02 Score=27.59 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=29.3
Q ss_pred CCCCceEEEEEeCCCCCCchHHHHHHHHHhh-CCCeEEEEecCCCC-CCcceeccCCeEEEEee
Q 011969 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQ-MSLEVDVVAYGGSK-PHAAILEHPSIHIHTMT 62 (474)
Q Consensus 1 m~~~~~~~i~~~~~~g~~~r~~~~a~~l~~~-~g~eV~Vv~~~~~~-~~~~~~~~~gi~i~~~~ 62 (474)
|. ++++.|+..|. | .-++.....+.+. ..++|..|...... ...+..+..||.++.++
T Consensus 5 m~-~~ri~vl~SG~-g--snl~all~~~~~~~l~~~I~~Visn~~~a~~l~~A~~~gIp~~~~~ 64 (209)
T 4ds3_A 5 MK-RNRVVIFISGG-G--SNMEALIRAAQAPGFPAEIVAVFSDKAEAGGLAKAEAAGIATQVFK 64 (209)
T ss_dssp -C-CEEEEEEESSC-C--HHHHHHHHHHTSTTCSEEEEEEEESCTTCTHHHHHHHTTCCEEECC
T ss_pred CC-CccEEEEEECC-c--HHHHHHHHHHHcCCCCcEEEEEEECCcccHHHHHHHHcCCCEEEeC
Confidence 55 34677777774 1 2233333333332 12566655543222 21234557799988877
No 137
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=27.26 E-value=1.4e+02 Score=29.14 Aligned_cols=83 Identities=13% Similarity=0.024 Sum_probs=58.0
Q ss_pred CCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCC---------CcccHHHHHhcccEEEe--eccCCCCCCCchHHHH
Q 011969 316 PRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWL---------SAEDYPLLLGSADLGVC--LHTSSSGLDLPMKVVD 384 (474)
Q Consensus 316 ~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v---------~~~~~~~~l~~adv~v~--~~~~s~~e~~p~kv~E 384 (474)
.+.++-|+|-|.--..+.+.++.+|.+ |....... ...++..+++.||+.++ |.++....-+.-..+.
T Consensus 140 ~g~tvGIiG~G~IG~~va~~~~~fg~~-v~~~d~~~~~~~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~ 218 (334)
T 3kb6_A 140 NRLTLGVIGTGRIGSRVAMYGLAFGMK-VLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERIS 218 (334)
T ss_dssp GGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHH
T ss_pred cCcEEEEECcchHHHHHHHhhcccCce-eeecCCccchhhhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHh
Confidence 346889999987767778888888764 44433311 13467889999999987 3334433447789999
Q ss_pred HHhcCCcEEEecccc
Q 011969 385 MFGCGLPVCAVSYSC 399 (474)
Q Consensus 385 ama~G~PVia~~~~~ 399 (474)
.|--|.-+|-+.-|+
T Consensus 219 ~mk~~a~lIN~aRG~ 233 (334)
T 3kb6_A 219 LMKDGVYLINTARGK 233 (334)
T ss_dssp HSCTTEEEEECSCGG
T ss_pred hcCCCeEEEecCccc
Confidence 999888888776443
No 138
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=27.14 E-value=47 Score=27.38 Aligned_cols=70 Identities=13% Similarity=-0.017 Sum_probs=44.8
Q ss_pred HHHhcccEEEeeccCCC--CCCCchHHHHHHhcCCcEEEecccccc---cccccCCcEEEeC-CHHHHHHHHHHHHh
Q 011969 358 LLLGSADLGVCLHTSSS--GLDLPMKVVDMFGCGLPVCAVSYSCIE---ELVKVDKNGLLFS-SSSELADQLLMLFK 428 (474)
Q Consensus 358 ~~l~~adv~v~~~~~s~--~e~~p~kv~Eama~G~PVia~~~~~~~---e~v~~~~~G~l~~-~~~~la~~i~~l~~ 428 (474)
.-++.||+++++..... .+..-.-+-.|-..|+|+|+...-+.. +.+++.. --++. +.+.+.++|...++
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~~P~~l~~~a-~~iV~Wn~~~I~~aI~~~~~ 109 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLENVPPELEAVS-SEVVGWNPHCIRDALEDALD 109 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSCCCTTHHHHC-SEEECSCHHHHHHHHHHHHC
T ss_pred CccccCCEEEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCcCCHHHHhhC-ceeccCCHHHHHHHHHhccC
Confidence 44788999998633322 122334567788899999999754433 3333222 23455 88999999988764
No 139
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=26.94 E-value=1.6e+02 Score=27.59 Aligned_cols=55 Identities=15% Similarity=0.044 Sum_probs=34.6
Q ss_pred ceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCC--CCcceeccCCeEEEEee
Q 011969 5 GRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSK--PHAAILEHPSIHIHTMT 62 (474)
Q Consensus 5 ~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~--~~~~~~~~~gi~i~~~~ 62 (474)
++++|.-...+ .+|.+...+..|.+. | +|.|+++...+ ....+.-...+++....
T Consensus 2 p~ILlTNDDGi-~apGi~~L~~~l~~~-g-~V~VvAP~~~~Sg~g~siT~~~pl~~~~~~ 58 (251)
T 2wqk_A 2 PTFLLVNDDGY-FSPGINALREALKSL-G-RVVVVAPDRNLSGVGHSLTFTEPLKMRKID 58 (251)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTT-S-EEEEEEESSCCTTSCCSCCCSSCEEEEEEE
T ss_pred CEEEEEcCCCC-CcHHHHHHHHHHHhC-C-CEEEEeeCCCCcccccCcCCCCCceeEEee
Confidence 34555555444 578888888888875 6 79999977433 22233334456666655
No 140
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=26.12 E-value=2.4e+02 Score=22.15 Aligned_cols=110 Identities=11% Similarity=-0.020 Sum_probs=63.3
Q ss_pred cCCCEEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc---ccEEEeeccCCCCCCCchHHHHHHhc-
Q 011969 314 LYPRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS---ADLGVCLHTSSSGLDLPMKVVDMFGC- 388 (474)
Q Consensus 314 ~~~~~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~---adv~v~~~~~s~~e~~p~kv~Eama~- 388 (474)
..+..+++|+.+.+. .+.+.+..+..|. .|.... +.++....+.. .|++++=.. ....-|..+++.+..
T Consensus 12 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~-~v~~~~---~~~~al~~l~~~~~~dlvilD~~--l~~~~g~~~~~~l~~~ 85 (138)
T 2b4a_A 12 HMQPFRVTLVEDEPSHATLIQYHLNQLGA-EVTVHP---SGSAFFQHRSQLSTCDLLIVSDQ--LVDLSIFSLLDIVKEQ 85 (138)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHHTTC-EEEEES---SHHHHHHTGGGGGSCSEEEEETT--CTTSCHHHHHHHHTTS
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHHcCC-EEEEeC---CHHHHHHHHHhCCCCCEEEEeCC--CCCCCHHHHHHHHHhh
Confidence 456778888886653 3455666666665 444433 35666666544 688887321 222235677777753
Q ss_pred --CCcEEEec-ccccccccccCCcEEEeC--CHHHHHHHHHHHHhC
Q 011969 389 --GLPVCAVS-YSCIEELVKVDKNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 389 --G~PVia~~-~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
.+|+|... ...-.+....-..+++.. +.++|...+..++..
T Consensus 86 ~~~~~ii~ls~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 86 TKQPSVLILTTGRHELIESSEHNLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp SSCCEEEEEESCC--CCCCSSSCEEEEESSCCHHHHHHHHHHTCCC
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHheeeCCCCHHHHHHHHHHHHHh
Confidence 67877653 221111111115677764 689999999988764
No 141
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=26.08 E-value=2.5e+02 Score=27.90 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=37.3
Q ss_pred HHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEeccccccccc-ccCCcEEEe-CCHHHHHHHHHHHHh
Q 011969 359 LLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELV-KVDKNGLLF-SSSSELADQLLMLFK 428 (474)
Q Consensus 359 ~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v-~~~~~G~l~-~~~~~la~~i~~l~~ 428 (474)
....||++|..-++-.-.++ ..+.++...|.|+|..+......+- ......+.+ .+.++....|...+.
T Consensus 216 ~~~~aDllLviGTSl~V~Pa-a~l~~~~~~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg 286 (361)
T 1q14_A 216 KHPQQPLVIVVGTSLAVYPF-ASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELG 286 (361)
T ss_dssp ---CCCEEEEESCCCCSTTG-GGHHHHSCTTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHT
T ss_pred hhccCCEEEEECCCCCchhH-HHHHHHHhcCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHcC
Confidence 35589999996333322222 2345655569999998865432110 112233444 477777777666655
No 142
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=26.02 E-value=1.1e+02 Score=27.35 Aligned_cols=58 Identities=16% Similarity=0.290 Sum_probs=33.0
Q ss_pred CceEEEEEeCCCCCCchHHHH-HHHHHhhCCCeEEEEecCCCCCCcc---eec----cCCeEEEEee
Q 011969 4 RGRACVVVLGDLGRSPRMQYQ-ALSLARQMSLEVDVVAYGGSKPHAA---ILE----HPSIHIHTMT 62 (474)
Q Consensus 4 ~~~~~i~~~~~~g~~~r~~~~-a~~l~~~~g~eV~Vv~~~~~~~~~~---~~~----~~gi~i~~~~ 62 (474)
++++.|+..++....+.-... +..+.+ .|+.|.+|+.+......+ +.+ .++-++.+++
T Consensus 106 ~~riiil~~~~~~~~~~~~~~~a~~lk~-~gi~v~~Ig~G~~~~~~~l~~la~~~n~~~~s~~~~~~ 171 (192)
T 2x5n_A 106 RQRIVAFVGSPIVEDEKNLIRLAKRMKK-NNVAIDIIHIGELQNESALQHFIDAANSSDSCHLVSIP 171 (192)
T ss_dssp EEEEEEEECSCCSSCHHHHHHHHHHHHH-TTEEEEEEEESCC---CHHHHHHHHHCSTTCCEEEEEC
T ss_pred CceEEEEEECCCCCCchhHHHHHHHHHH-CCCEEEEEEeCCCCccHHHHHHHHhccCCCceEEEEec
Confidence 345666777766444443333 444445 599999999875543222 111 2567777777
No 143
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=25.91 E-value=2.6e+02 Score=22.49 Aligned_cols=108 Identities=11% Similarity=-0.005 Sum_probs=63.8
Q ss_pred CCEEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHh---cC
Q 011969 316 PRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG---CG 389 (474)
Q Consensus 316 ~~~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama---~G 389 (474)
...+++|+.+.+. ...+.+..+..|. .|.... +.++....+.. .|++++=.. ....-|..+++.+. ..
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~-~v~~~~---~~~~a~~~l~~~~~dlvi~d~~--l~~~~g~~~~~~l~~~~~~ 79 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGC-NIITFT---SPLDALEALKGTSVQLVISDMR--MPEMGGEVFLEQVAKSYPD 79 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTC-EEEEES---CHHHHHHHHTTSCCSEEEEESS--CSSSCHHHHHHHHHHHCTT
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCC-eEEEeC---CHHHHHHHHhcCCCCEEEEecC--CCCCCHHHHHHHHHHhCCC
Confidence 4567888886543 2445555665554 344332 35666666654 588887321 12223445555553 47
Q ss_pred CcEEEecc-cc---cccccccC-CcEEEeC--CHHHHHHHHHHHHhC
Q 011969 390 LPVCAVSY-SC---IEELVKVD-KNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 390 ~PVia~~~-~~---~~e~v~~~-~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
+|||.... .. ..+.+..+ ..+++.. +.++|...|..++..
T Consensus 80 ~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 80 IERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp SEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHH
Confidence 88887542 22 23334444 6788875 689999999998873
No 144
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=25.83 E-value=2.5e+02 Score=22.24 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=64.3
Q ss_pred CEEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc---ccEEEeeccCCCCCCCchHHHHHHh--cCC
Q 011969 317 RLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS---ADLGVCLHTSSSGLDLPMKVVDMFG--CGL 390 (474)
Q Consensus 317 ~~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~---adv~v~~~~~s~~e~~p~kv~Eama--~G~ 390 (474)
..+++|+.+.+. ...+.+..++.|. .|... -+.++....+.. .|++++=..... ..-|..+++.+. ..+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~-~v~~~---~~~~~a~~~l~~~~~~dlvi~D~~l~~-~~~g~~~~~~l~~~~~~ 79 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGY-TVEIA---LTGEAAVEKVSGGWYPDLILMDIELGE-GMDGVQTALAIQQISEL 79 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTC-EEEEE---SSHHHHHHHHHTTCCCSEEEEESSCSS-SCCHHHHHHHHHHHCCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCC-EEEEe---cChHHHHHHHhcCCCCCEEEEeccCCC-CCCHHHHHHHHHhCCCC
Confidence 357788876543 3556666777765 34333 235666666643 588887322111 123455555544 478
Q ss_pred cEEEecc-c---ccccccccCCcEEEeC--CHHHHHHHHHHHHh
Q 011969 391 PVCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFK 428 (474)
Q Consensus 391 PVia~~~-~---~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~ 428 (474)
|||.... . ...+....|..+++.. +.++|...|..+++
T Consensus 80 ~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 80 PVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp CEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 8887542 2 2334555677788875 69999999998876
No 145
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=25.71 E-value=2.3e+02 Score=26.31 Aligned_cols=77 Identities=14% Similarity=0.077 Sum_probs=43.6
Q ss_pred CcEEEecCCCCcc---cHHHHHhcccEEEeeccCCCCCCCchH--HHHHHhcCCcEEEecccccccccccCCcEEEe-CC
Q 011969 342 KRVAFRTMWLSAE---DYPLLLGSADLGVCLHTSSSGLDLPMK--VVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF-SS 415 (474)
Q Consensus 342 ~~V~f~g~~v~~~---~~~~~l~~adv~v~~~~~s~~e~~p~k--v~Eama~G~PVia~~~~~~~e~v~~~~~G~l~-~~ 415 (474)
++|.|.|..+|.+ .....++.||+++..-+ +...+|.. +..|-..|.|+|..+.....- +....+.+ .+
T Consensus 154 P~Vv~FgE~lp~~~~~~a~~~~~~adlllviGT--Sl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~---d~~~~~~i~~~ 228 (249)
T 1m2k_A 154 PGVVWAGEMLPPDVLDRAMREVERADVIIVAGT--SAVVQPAASLPLIVKQRGGAIIEINPDETPL---TPIADYSLRGK 228 (249)
T ss_dssp EEECCTTSCCCHHHHHHHHHHHHHCSEEEEESC--CSCSTTGGGHHHHHHHTTCEEEEECSSCCTT---GGGCSEEECSC
T ss_pred CeEEecCCCCCHHHHHHHHHHHhcCCEEEEEcc--CCCccchHHHHHHHHHcCCeEEEEeCCCCCC---CcceeEEEeCC
Confidence 4677777766643 34566778999999643 32223332 345566799999988543321 11223444 46
Q ss_pred HHHHHHHH
Q 011969 416 SSELADQL 423 (474)
Q Consensus 416 ~~~la~~i 423 (474)
.++....|
T Consensus 229 ~~~~l~~l 236 (249)
T 1m2k_A 229 AGEVMDEL 236 (249)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544444
No 146
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=25.69 E-value=43 Score=29.44 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=23.7
Q ss_pred CCCCceEEEEEeCCCCCCchHHHHH-HHHHhhCCCeEEEEecCC
Q 011969 1 MGRRGRACVVVLGDLGRSPRMQYQA-LSLARQMSLEVDVVAYGG 43 (474)
Q Consensus 1 m~~~~~~~i~~~~~~g~~~r~~~~a-~~l~~~~g~eV~Vv~~~~ 43 (474)
|+++++++|+..+ -|.+.++...+ ..+.+. |++|.++....
T Consensus 1 M~~mmkilii~~S-~g~T~~la~~i~~~l~~~-g~~v~~~~l~~ 42 (199)
T 2zki_A 1 MSCKPNILVLFYG-YGSIVELAKEIGKGAEEA-GAEVKIRRVRE 42 (199)
T ss_dssp --CCCEEEEEECC-SSHHHHHHHHHHHHHHHH-SCEEEEEECCC
T ss_pred CCCCcEEEEEEeC-ccHHHHHHHHHHHHHHhC-CCEEEEEehhH
Confidence 6666667777777 44444444433 334444 89999987554
No 147
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=25.45 E-value=2.9e+02 Score=26.35 Aligned_cols=58 Identities=10% Similarity=0.040 Sum_probs=30.5
Q ss_pred CCCceEEEEEeCCCCCCchHHHHHHHHHhh-CCCeEEEEecCCCCCCcceeccCCeEEEEee
Q 011969 2 GRRGRACVVVLGDLGRSPRMQYQALSLARQ-MSLEVDVVAYGGSKPHAAILEHPSIHIHTMT 62 (474)
Q Consensus 2 ~~~~~~~i~~~~~~g~~~r~~~~a~~l~~~-~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~ 62 (474)
.+++++.|++.|. | .-++......... ...+|.+|.........+..+..||.++.++
T Consensus 86 ~~~~ri~vl~Sg~-g--~nl~~ll~~~~~g~l~~~i~~Visn~~~a~~~~A~~~gIp~~~~~ 144 (287)
T 3nrb_A 86 TDRKKVVIMVSKF-D--HCLGDLLYRHRLGELDMEVVGIISNHPREALSVSLVGDIPFHYLP 144 (287)
T ss_dssp TCCCEEEEEECSC-C--HHHHHHHHHHHHTSSCCEEEEEEESSCGGGCCCCCCTTSCEEECC
T ss_pred CCCcEEEEEEeCC-C--cCHHHHHHHHHCCCCCeEEEEEEeCChHHHHHHHHHcCCCEEEEe
Confidence 3567788888774 2 1222222222221 2346665554433212345667799999887
No 148
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=24.97 E-value=2.4e+02 Score=21.73 Aligned_cols=106 Identities=8% Similarity=0.096 Sum_probs=63.2
Q ss_pred EEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHh-----cC
Q 011969 318 LLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG-----CG 389 (474)
Q Consensus 318 ~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama-----~G 389 (474)
.+++|+.+.+. ...+....+..|...|.... +.++....+.. .|++++=. .....-|..+++.+. ..
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~---~~~~a~~~~~~~~~dlvl~D~--~l~~~~g~~~~~~l~~~~~~~~ 81 (129)
T 1p6q_A 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAG---DGEQGMKIMAQNPHHLVISDF--NMPKMDGLGLLQAVRANPATKK 81 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTCSCEECCS---SHHHHHHHHHTSCCSEEEECS--SSCSSCHHHHHHHHTTCTTSTT
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCcEEEecC---CHHHHHHHHHcCCCCEEEEeC--CCCCCCHHHHHHHHhcCccccC
Confidence 46778876543 24455556655543444432 35666666654 58887721 122224567777774 35
Q ss_pred CcEEEecc-cc---cccccccCCcEEEeC--CHHHHHHHHHHHHh
Q 011969 390 LPVCAVSY-SC---IEELVKVDKNGLLFS--SSSELADQLLMLFK 428 (474)
Q Consensus 390 ~PVia~~~-~~---~~e~v~~~~~G~l~~--~~~~la~~i~~l~~ 428 (474)
+|+|.... +. ..+.+..|..+++.. +.+++..++..++.
T Consensus 82 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 82 AAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp CEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 78877542 22 234455677888875 68899999988765
No 149
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=24.95 E-value=1.9e+02 Score=23.12 Aligned_cols=65 Identities=8% Similarity=0.050 Sum_probs=0.0
Q ss_pred EEEEeCCCCh----HHHHHHHHHcCCC-cEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcE
Q 011969 320 FIITGKGPDK----ESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPV 392 (474)
Q Consensus 320 l~ivG~g~~~----~~~~~~~~~l~l~-~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PV 392 (474)
++++|.|-.. +.+++.+++.|++ .|.-.+. .++...+..+|++++ +....+-..-++..+-..||
T Consensus 7 ll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~----~~~~~~~~~~Dvil~----~pqv~~~~~~~~~~~~~~~v 76 (106)
T 1e2b_A 7 YLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPE----TLAGEKGQNADVVLL----GPQIAYMLPEIQRLLPNKPV 76 (106)
T ss_dssp EEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECS----SSTTHHHHHCSEEEE----CTTSGGGHHHHHHHSSSSCC
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecH----HHHHhhccCCCEEEE----ccchhhhHHHHHHHhcCCCc
No 150
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=24.94 E-value=99 Score=24.67 Aligned_cols=105 Identities=9% Similarity=0.043 Sum_probs=65.6
Q ss_pred EEEEEEeCCCC-hHHHHHHHHH-cCCCcEEEecCCCCcccHHHHHhc---ccEEEeeccCCC-C-CCCchHHHHHHh---
Q 011969 318 LLFIITGKGPD-KESYEEKIRR-LRLKRVAFRTMWLSAEDYPLLLGS---ADLGVCLHTSSS-G-LDLPMKVVDMFG--- 387 (474)
Q Consensus 318 ~~l~ivG~g~~-~~~~~~~~~~-l~l~~V~f~g~~v~~~~~~~~l~~---adv~v~~~~~s~-~-e~~p~kv~Eama--- 387 (474)
.+++|+.+.+. ...+.+..++ .+. .|.... +.++....+.. .|++++ ... . ..-|..+++.+.
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~-~v~~~~---~~~~a~~~l~~~~~~dlvi~---D~~l~~~~~g~~~~~~l~~~~ 77 (140)
T 3lua_A 5 GTVLLIDYFEYEREKTKIIFDNIGEY-DFIEVE---NLKKFYSIFKDLDSITLIIM---DIAFPVEKEGLEVLSAIRNNS 77 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCCC-EEEEEC---SHHHHHTTTTTCCCCSEEEE---CSCSSSHHHHHHHHHHHHHSG
T ss_pred CeEEEEeCCHHHHHHHHHHHHhccCc-cEEEEC---CHHHHHHHHhcCCCCcEEEE---eCCCCCCCcHHHHHHHHHhCc
Confidence 56778876543 3556666676 665 343332 35666666655 688887 221 1 223456666554
Q ss_pred --cCCcEEEeccc----ccccccccCCcEEEeC--CHHHHHHHHHHHHhC
Q 011969 388 --CGLPVCAVSYS----CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 388 --~G~PVia~~~~----~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
..+|||..... ...+.+..|..+++.. +.++|.++|..+++.
T Consensus 78 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (140)
T 3lua_A 78 RTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKI 127 (140)
T ss_dssp GGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 47898876432 2334456677888885 689999999999885
No 151
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=24.71 E-value=2.4e+02 Score=21.69 Aligned_cols=106 Identities=13% Similarity=-0.039 Sum_probs=63.1
Q ss_pred EEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHh-----cC
Q 011969 318 LLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG-----CG 389 (474)
Q Consensus 318 ~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama-----~G 389 (474)
.+++|+.+.+. .+.+.+..++.|. .|.... +.++....+.. .|++++=.. ....-|..+++.+. ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~-~v~~~~---~~~~a~~~l~~~~~dlii~D~~--l~~~~g~~~~~~l~~~~~~~~ 77 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGF-QADYVM---SGTDALHAMSTRGYDAVFIDLN--LPDTSGLALVKQLRALPMEKT 77 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTE-EEEEES---SHHHHHHHHHHSCCSEEEEESB--CSSSBHHHHHHHHHHSCCSSC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCC-CEEEEC---CHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHHhhhccCC
Confidence 56788876543 3556666777664 344432 35666666654 588877321 22234556666654 45
Q ss_pred CcEEEeccccc---ccccccCCcEEEeC--CHHHHHHHHHHHHhC
Q 011969 390 LPVCAVSYSCI---EELVKVDKNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 390 ~PVia~~~~~~---~e~v~~~~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
+|||......- .+....+..+++.. +.++|.+++....+.
T Consensus 78 ~~ii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 78 SKFVAVSGFAKNDLGKEACELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp CEEEEEECC-CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCEEEEECCcchhHHHHHHHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 78887542211 34455566788875 699999999887664
No 152
>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}
Probab=24.48 E-value=3.2e+02 Score=27.16 Aligned_cols=115 Identities=15% Similarity=0.165 Sum_probs=60.6
Q ss_pred CEEEEEE-eC-CCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEE--EeeccCCCCC---CCch-------HH
Q 011969 317 RLLFIIT-GK-GPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLG--VCLHTSSSGL---DLPM-------KV 382 (474)
Q Consensus 317 ~~~l~iv-G~-g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~--v~~~~~s~~e---~~p~-------kv 382 (474)
++++.+= |. |...+.+.+.+..++.++|.-=-.-+...++..++..-.+. +|| +++. .++. .+
T Consensus 210 Gl~~t~HAGE~~~p~~~i~~al~~lga~RIgHG~~~~~d~~L~~~l~~~~I~lEvCP---~SN~~l~~v~~~~~~~~HP~ 286 (380)
T 4gxw_A 210 GFRTTAHAGEFGMPWRNVETAVDLLHVDRVDHGYTIVDNPELCARYAERGIVFTVVP---TNSYYLRTLPPDQWAERHPM 286 (380)
T ss_dssp TCEEEEEESCTTCCHHHHHHHHHTSCCSEEEECGGGGGCHHHHHHHHHHTCEEEECT---TCHHHHHHSCTTTHHHHCGG
T ss_pred CCCeeeeccccCCchHHHHHHHHHcCCcccccceeeccChHHHHHHHHhCceeEECC---cchhhhcccccccccccChH
Confidence 4666553 32 22235677777777777776422212345666777666655 453 3221 0110 24
Q ss_pred HHHHhcCCcEEEe-cccccccccccCCcEEEeCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 011969 383 VDMFGCGLPVCAV-SYSCIEELVKVDKNGLLFSSSSELADQLLMLFKGFPDDSDVLKKLRNGTLEMG 448 (474)
Q Consensus 383 ~Eama~G~PVia~-~~~~~~e~v~~~~~G~l~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 448 (474)
-..+..|+||..+ |.+++-. .+ |.+-...+.+.+..+.+++.++..|+.+++
T Consensus 287 ~~l~~~Gv~vtinTDDp~~f~-----------t~---Ls~Ey~~~~~~~gls~~dl~~l~~nsi~~s 339 (380)
T 4gxw_A 287 RKMPGLGLKIHPNTDDPTLHK-----------VN---PSEAWELMFSHFGFTIADLKQFMLNGIDGA 339 (380)
T ss_dssp GGTGGGTCEEEECCBSHHHHT-----------CC---HHHHHHHHHHTSCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHCCCeEEECCCCchhhC-----------CC---HHHHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 5567888888654 2222110 12 333334444445556777888888887654
No 153
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=24.44 E-value=57 Score=31.30 Aligned_cols=79 Identities=14% Similarity=0.033 Sum_probs=42.7
Q ss_pred CEEEEEEeCC-CChH---HHHHHHHHcCCC---cEEEecCCCCcccH------------HH---HHhcccEEEeeccCCC
Q 011969 317 RLLFIITGKG-PDKE---SYEEKIRRLRLK---RVAFRTMWLSAEDY------------PL---LLGSADLGVCLHTSSS 374 (474)
Q Consensus 317 ~~~l~ivG~g-~~~~---~~~~~~~~l~l~---~V~f~g~~v~~~~~------------~~---~l~~adv~v~~~~~s~ 374 (474)
..++.|+|+- ...+ ++.+..++.|.. .|... |++.+++ .. .+..+|.+|+|-.++.
T Consensus 25 ~~~Iavv~d~~~~~~s~~si~~~L~~~G~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgiil~GG~~~ 102 (289)
T 2v4u_A 25 ICSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLM--YIDSIDLEKITETEDPVKFHEAWQKLCKADGILVPGGFGI 102 (289)
T ss_dssp EEEEEEEESCSSCCGGGHHHHHHHHHHHHHTTEEEEEE--EEEGGGGSHHHHHHCHHHHHHHHHHHHHCSEEEECSCCSS
T ss_pred ceEEEEEecCcCCCccHHHHHHHHHHhhhhhCCceEEE--EechhhcccccccCChhhhhhHHHHHhhCCEEEecCCCCc
Confidence 4788899765 3323 455555555441 23333 2333321 11 4788999999632221
Q ss_pred C--CCCchHHHHHHhcCCcEEEecc
Q 011969 375 G--LDLPMKVVDMFGCGLPVCAVSY 397 (474)
Q Consensus 375 ~--e~~p~kv~Eama~G~PVia~~~ 397 (474)
. .+....+-+++..|+||++...
T Consensus 103 ~~~~~~~~~i~~~~~~~~PilGIC~ 127 (289)
T 2v4u_A 103 RGTLGKLQAISWARTKKIPFLGVXL 127 (289)
T ss_dssp TTHHHHHHHHHHHHHTTCCEEEETH
T ss_pred hhHHHHHHHHHHHHHcCCcEEEECc
Confidence 1 1112244556678999998853
No 154
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=24.03 E-value=2.7e+02 Score=21.97 Aligned_cols=107 Identities=10% Similarity=-0.002 Sum_probs=61.8
Q ss_pred CEEEEEEeCCCC-hHHHHHHHHHc-CCCcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHhc---C
Q 011969 317 RLLFIITGKGPD-KESYEEKIRRL-RLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGC---G 389 (474)
Q Consensus 317 ~~~l~ivG~g~~-~~~~~~~~~~l-~l~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama~---G 389 (474)
..+++|+.+.+. ...+.+..+.. +...+.... +.++....+.. .|++++=. .....-|..+++.+.. .
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~---~~~~al~~l~~~~~dlvi~d~--~l~~~~g~~~~~~l~~~~~~ 83 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFD---DGLDVLKFLQHNKVDAIFLDI--NIPSLDGVLLAQNISQFAHK 83 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEES---CHHHHHHHHHHCCCSEEEECS--SCSSSCHHHHHHHHTTSTTC
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeC---CHHHHHHHHHhCCCCEEEEec--CCCCCCHHHHHHHHHccCCC
Confidence 467888886543 24455555554 332232322 35565555554 68888721 1222345677777754 3
Q ss_pred CcEEEe-cc-cccccccccCCcEEEeC--CHHHHHHHHHHHHh
Q 011969 390 LPVCAV-SY-SCIEELVKVDKNGLLFS--SSSELADQLLMLFK 428 (474)
Q Consensus 390 ~PVia~-~~-~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~ 428 (474)
.|||.. .. ....+.+..+..+++.. +.++|...|..+++
T Consensus 84 ~~ii~~s~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 84 PFIVFITAWKEHAVEAFELEAFDYILKPYQESRIINMLQKLTT 126 (143)
T ss_dssp CEEEEEESCCTTHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 456544 22 23334455677888875 68899999988876
No 155
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=24.00 E-value=2e+02 Score=29.01 Aligned_cols=76 Identities=18% Similarity=0.144 Sum_probs=53.3
Q ss_pred CCCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCC----CC----------------------cccHHHHHhcccEEEe
Q 011969 315 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMW----LS----------------------AEDYPLLLGSADLGVC 368 (474)
Q Consensus 315 ~~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~----v~----------------------~~~~~~~l~~adv~v~ 368 (474)
.++.+++++|.|.--...-+.+..+|.++|.+.... .. ..++.+.+..+|+++-
T Consensus 190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG 269 (388)
T 1vl6_A 190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIG 269 (388)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEE
T ss_pred CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEEE
Confidence 577999999999766666677777788788877652 11 2348999999999998
Q ss_pred eccCCCCCCCchHHHHHHhcCCcEEE
Q 011969 369 LHTSSSGLDLPMKVVDMFGCGLPVCA 394 (474)
Q Consensus 369 ~~~~s~~e~~p~kv~Eama~G~PVia 394 (474)
. |..--+...+++.|+ ..|||.
T Consensus 270 ~---Sap~l~t~emVk~Ma-~~pIIf 291 (388)
T 1vl6_A 270 V---SRGNILKPEWIKKMS-RKPVIF 291 (388)
T ss_dssp C---SCSSCSCHHHHTTSC-SSCEEE
T ss_pred e---CCCCccCHHHHHhcC-CCCEEE
Confidence 4 333335566777776 356554
No 156
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=23.92 E-value=2.9e+02 Score=26.37 Aligned_cols=56 Identities=7% Similarity=0.048 Sum_probs=29.6
Q ss_pred CCCceEEEEEeCCCCCCchHHHHHH-HHHhh--CCCeEEEEecCCCCCCcceeccCCeEEEEee
Q 011969 2 GRRGRACVVVLGDLGRSPRMQYQAL-SLARQ--MSLEVDVVAYGGSKPHAAILEHPSIHIHTMT 62 (474)
Q Consensus 2 ~~~~~~~i~~~~~~g~~~r~~~~a~-~l~~~--~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~ 62 (474)
.+++++.|++.|. | ...+++ ...+. ...+|.+|.........+..+..||.++.++
T Consensus 87 ~~~~ri~vl~Sg~-g----~nl~~ll~~~~~g~l~~~i~~Visn~p~~~~~~A~~~gIp~~~~~ 145 (288)
T 3obi_A 87 ETRRKVMLLVSQS-D----HCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDFGDIPFYHFP 145 (288)
T ss_dssp TSCEEEEEEECSC-C----HHHHHHHHHHHTTSSCEEEEEEEESSCGGGSCCTTTTTCCEEECC
T ss_pred CCCcEEEEEEcCC-C----CCHHHHHHHHHCCCCCeEEEEEEcCCChhHHHHHHHcCCCEEEeC
Confidence 3466788887774 2 222222 22222 1235555544431112355667799999887
No 157
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=23.74 E-value=1.5e+02 Score=23.45 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=62.1
Q ss_pred EEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHh---cCCc
Q 011969 318 LLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG---CGLP 391 (474)
Q Consensus 318 ~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama---~G~P 391 (474)
.+++|+.+.+. ...+.+..++.|. .|.... +.++....+.. .|++++=. ....-|..+++.+. ..+|
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~-~v~~~~---~~~~a~~~l~~~~~dlvi~d~---~~~~~g~~~~~~l~~~~~~~p 77 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEKDGF-NVIWAK---NEQEAFTFLRREKIDLVFVDV---FEGEESLNLIRRIREEFPDTK 77 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGGGTC-EEEEES---SHHHHHHHHTTSCCSEEEEEC---TTTHHHHHHHHHHHHHCTTCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCC-EEEEEC---CHHHHHHHHhccCCCEEEEeC---CCCCcHHHHHHHHHHHCCCCC
Confidence 46777775543 2445555665554 344332 35666666654 68888732 11112344555443 3688
Q ss_pred EEEecc-cc---cccccccCCcEEEeC--CHHHHHHHHHHHHhC
Q 011969 392 VCAVSY-SC---IEELVKVDKNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 392 Via~~~-~~---~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
||.... .. ..+....+..+++.. +.++|...|..++..
T Consensus 78 ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 78 VAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISS 121 (142)
T ss_dssp EEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC
T ss_pred EEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhh
Confidence 887542 22 234455677888875 699999999999885
No 158
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=23.60 E-value=2.7e+02 Score=23.10 Aligned_cols=38 Identities=8% Similarity=-0.021 Sum_probs=21.0
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCCCc-EEEEecCc
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRRSA-FIVDWHNF 137 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~h~~ 137 (474)
..+|+|++..+.......+...++.+.+.. ++....+.
T Consensus 83 ~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~ 121 (155)
T 2g1u_A 83 EKADMVFAFTNDDSTNFFISMNARYMFNVENVIARVYDP 121 (155)
T ss_dssp GGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSSG
T ss_pred ccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 568999887764333333444555545544 44444444
No 159
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Probab=23.53 E-value=47 Score=31.70 Aligned_cols=44 Identities=14% Similarity=0.285 Sum_probs=31.2
Q ss_pred CCCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccE
Q 011969 315 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADL 365 (474)
Q Consensus 315 ~~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv 365 (474)
.+++.++++|+|.++ ++.++.++.+-+.+.. +.|+..+..+-|+
T Consensus 228 G~k~~yvvIGDG~eE---e~AAk~~n~PFwrI~~----h~Dl~~l~~al~l 271 (274)
T 3geb_A 228 GRKAVYVVIGDGVEE---EQGAKKHNMPFWRISC----HADLEALRHALEL 271 (274)
T ss_dssp CTTSEEEEEESSHHH---HHHHHHTTCCEEECCS----HHHHHHHHHHHHH
T ss_pred CCCceEEEECCCHHH---HHHHHHcCCCeEEeec----CccHHHHHHhhcc
Confidence 688999999999754 4577888877665543 5677766655443
No 160
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=23.47 E-value=61 Score=31.34 Aligned_cols=76 Identities=13% Similarity=0.035 Sum_probs=47.8
Q ss_pred CEEEEEEe-CCCChHHHHHHHHHcCCCcEEEecCCCCc------------------------ccHHHHHhcccEEEeecc
Q 011969 317 RLLFIITG-KGPDKESYEEKIRRLRLKRVAFRTMWLSA------------------------EDYPLLLGSADLGVCLHT 371 (474)
Q Consensus 317 ~~~l~ivG-~g~~~~~~~~~~~~l~l~~V~f~g~~v~~------------------------~~~~~~l~~adv~v~~~~ 371 (474)
.+++.++| .|..-..+.+.+.+. +.+.+.|. ++. .++..++..+|+.|-.
T Consensus 21 ~irV~V~Ga~GrMGr~i~~~v~~~--~~~eLvg~-vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDF-- 95 (288)
T 3ijp_A 21 SMRLTVVGANGRMGRELITAIQRR--KDVELCAV-LVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDF-- 95 (288)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTC--SSEEEEEE-BCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEEC--
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC--CCCEEEEE-EecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEc--
Confidence 48999999 776545555554432 35555554 222 3678888999999862
Q ss_pred CCCCCCCchHHHHHHhcCCcEEEeccc
Q 011969 372 SSSGLDLPMKVVDMFGCGLPVCAVSYS 398 (474)
Q Consensus 372 ~s~~e~~p~kv~Eama~G~PVia~~~~ 398 (474)
+..+..-.-+..++..|+|+|....|
T Consensus 96 -T~p~a~~~~~~~~l~~Gv~vViGTTG 121 (288)
T 3ijp_A 96 -SQPQASVLYANYAAQKSLIHIIGTTG 121 (288)
T ss_dssp -SCHHHHHHHHHHHHHHTCEEEECCCC
T ss_pred -CCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 22222222455678899999986544
No 161
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=23.10 E-value=2.1e+02 Score=23.09 Aligned_cols=108 Identities=13% Similarity=0.087 Sum_probs=61.8
Q ss_pred CEEEEEEeCCCCh-HHHHHHHHH-cCCCcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHh---cC
Q 011969 317 RLLFIITGKGPDK-ESYEEKIRR-LRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG---CG 389 (474)
Q Consensus 317 ~~~l~ivG~g~~~-~~~~~~~~~-l~l~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama---~G 389 (474)
..+++|+.+.+.. +.+.+..++ .+ +...+..-+.++....+.. .|++++=. .....-|..+++.+. .+
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~---~~v~~~~~~~~~a~~~l~~~~~dlii~D~--~l~~~~g~~~~~~l~~~~~~ 79 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPG---YAVVAEAADAGEAYRLYRETTPDIVVMDL--TLPGPGGIEATRHIRQWDGA 79 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTT---EEEEEEESSHHHHHHHHHTTCCSEEEECS--CCSSSCHHHHHHHHHHHCTT
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCC---cEEEEEeCCHHHHHHHHhcCCCCEEEEec--CCCCCCHHHHHHHHHHhCCC
Confidence 4678888865432 334444443 23 2222110235666666654 58888721 122223555666553 46
Q ss_pred CcEEEecc-c---ccccccccCCcEEEeC--CHHHHHHHHHHHHhC
Q 011969 390 LPVCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 390 ~PVia~~~-~---~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
+|||.... . ...+.+..|..|++.. +.++|...|..++..
T Consensus 80 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 80 ARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAG 125 (153)
T ss_dssp CCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTT
T ss_pred CeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhC
Confidence 88887542 2 2334455677888885 688999999999875
No 162
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=22.85 E-value=1.8e+02 Score=21.72 Aligned_cols=104 Identities=9% Similarity=0.019 Sum_probs=60.0
Q ss_pred EEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHh-----cCC
Q 011969 319 LFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG-----CGL 390 (474)
Q Consensus 319 ~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama-----~G~ 390 (474)
+++++.+.+. .+.+.+..+..|. +|.... +.++....+.. .|+.++-.. ....-|..+++.+. ..+
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~-~v~~~~---~~~~~~~~l~~~~~dlii~d~~--~~~~~~~~~~~~l~~~~~~~~~ 76 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGF-KVIWLV---DGSTALDQLDLLQPIVILMAWP--PPDQSCLLLLQHLREHQADPHP 76 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTC-EEEEES---CHHHHHHHHHHHCCSEEEEECS--TTCCTHHHHHHHHHHTCCCSSC
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCc-EEEEec---CHHHHHHHHHhcCCCEEEEecC--CCCCCHHHHHHHHHhccccCCC
Confidence 5667775543 3456666666665 444433 35555555544 688887321 22223556777764 567
Q ss_pred cEEEec-ccccccccccCCcEEEeC--CHHHHHHHHHHHHh
Q 011969 391 PVCAVS-YSCIEELVKVDKNGLLFS--SSSELADQLLMLFK 428 (474)
Q Consensus 391 PVia~~-~~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~ 428 (474)
|+|... .....+....+..+++.. +.+++...+..++.
T Consensus 77 ~ii~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 77 PLVLFLGEPPVDPLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp CCEEEESSCCSSHHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred CEEEEeCCCCchhhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 887653 222224555566777764 57888888877654
No 163
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=22.66 E-value=2.6e+02 Score=21.28 Aligned_cols=105 Identities=10% Similarity=0.034 Sum_probs=60.5
Q ss_pred EEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHh--cccEEEeeccCCCCCCCchHHHHHHh-----cCC
Q 011969 319 LFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLG--SADLGVCLHTSSSGLDLPMKVVDMFG-----CGL 390 (474)
Q Consensus 319 ~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~--~adv~v~~~~~s~~e~~p~kv~Eama-----~G~ 390 (474)
+++|+.+.+. .+.+.+..+..|.. +.... +.++....+. ..|+.++=.. ....-|..+++.+. ..+
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~~~~-v~~~~---~~~~a~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l~~~~~~~~~ 76 (124)
T 1mb3_A 3 KVLIVEDNELNMKLFHDLLEAQGYE-TLQTR---EGLSALSIARENKPDLILMDIQ--LPEISGLEVTKWLKEDDDLAHI 76 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCE-EEEES---CHHHHHHHHHHHCCSEEEEESB--CSSSBHHHHHHHHHHSTTTTTS
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCcE-EEEeC---CHHHHHHHHhcCCCCEEEEeCC--CCCCCHHHHHHHHHcCccccCC
Confidence 4667775543 24455556665542 33222 3455555544 3688887321 12223556676664 367
Q ss_pred cEEEecc----cccccccccCCcEEEeC--CHHHHHHHHHHHHhC
Q 011969 391 PVCAVSY----SCIEELVKVDKNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 391 PVia~~~----~~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
|||.... ....+..+.|..+++.. +.+++...+..+++.
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 77 PVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp CEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred cEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 8887542 22234455677888875 689999999988764
No 164
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=22.62 E-value=55 Score=30.07 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=42.9
Q ss_pred CCEEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEE
Q 011969 316 PRLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCA 394 (474)
Q Consensus 316 ~~~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia 394 (474)
.+.++++.|-.+. .+.+.+.++.+|. . +. ++ ...+.-+|++ ... -..|++.|++.|+|||.
T Consensus 15 ~~~~i~~SG~~~~~~~~l~~~i~~lGg-------~-v~-~~----~~~~THLI~~---~~~--rT~K~l~A~~~g~~IVs 76 (219)
T 3sqd_A 15 LTPFVLFTGFEPVQVQQYIKKLYILGG-------E-VA-ES----AQKCTHLIAS---KVT--RTVKFLTAISVVKHIVT 76 (219)
T ss_dssp GCCEEEECSCCHHHHHHHHHHHHHTTC-------E-EC-SS----GGGCSEEECS---SCC--CCHHHHHHTTTCSEEEC
T ss_pred CCeEEEEeCCChHHHHHHHHHHHHCCC-------E-Ee-CC----CCCceEEEEC---CCC--CCHHHHHHHHcCCCEec
Confidence 3578888885433 3568888999983 2 21 22 1678888873 311 13599999999999998
Q ss_pred ec
Q 011969 395 VS 396 (474)
Q Consensus 395 ~~ 396 (474)
.+
T Consensus 77 ~~ 78 (219)
T 3sqd_A 77 PE 78 (219)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 165
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=22.54 E-value=2.7e+02 Score=21.48 Aligned_cols=104 Identities=11% Similarity=0.060 Sum_probs=62.7
Q ss_pred EEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHh-----cCC
Q 011969 319 LFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFG-----CGL 390 (474)
Q Consensus 319 ~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama-----~G~ 390 (474)
+++|+.+.+. ...+....++.|. .|... -+.++....+.. .|+.++= ..-...-|..+++.+. ..+
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~g~-~v~~~---~~~~~al~~l~~~~~dlvllD--~~~p~~~g~~~~~~l~~~~~~~~~ 77 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKEGY-EVIEA---ENGQIALEKLSEFTPDLIVLX--IMMPVMDGFTVLKKLQEKEEWKRI 77 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC-EEEEE---SSHHHHHHHHTTBCCSEEEEC--SCCSSSCHHHHHHHHHTSTTTTTS
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCc-EEEEe---CCHHHHHHHHHhcCCCEEEEe--ccCCCCcHHHHHHHHHhcccccCC
Confidence 5667775543 2445555666664 33333 235666666654 5887772 1122334667777773 368
Q ss_pred cEEEecc-cc---cccccccCCcEEEeC--CHHHHHHHHHHHHh
Q 011969 391 PVCAVSY-SC---IEELVKVDKNGLLFS--SSSELADQLLMLFK 428 (474)
Q Consensus 391 PVia~~~-~~---~~e~v~~~~~G~l~~--~~~~la~~i~~l~~ 428 (474)
|||.... +. ..+....|..+++.. +++++...+..+++
T Consensus 78 pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 78 PVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp CEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 8887543 22 233455677888885 69999999988765
No 166
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=22.04 E-value=3e+02 Score=23.45 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=40.3
Q ss_pred EEEEEeCCCCh---HHHHHHHHHcCCCcEEEecCCCCcccH---HHHHhcccEEEeeccCCCCCCC--chHHHHHHhcCC
Q 011969 319 LFIITGKGPDK---ESYEEKIRRLRLKRVAFRTMWLSAEDY---PLLLGSADLGVCLHTSSSGLDL--PMKVVDMFGCGL 390 (474)
Q Consensus 319 ~l~ivG~g~~~---~~~~~~~~~l~l~~V~f~g~~v~~~~~---~~~l~~adv~v~~~~~s~~e~~--p~kv~Eama~G~ 390 (474)
++.++|.|... ..+......+|. ++.+... +..++ ...+..-|+++.. +.+|+.- -..+-.|-..|.
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~-~~~~~~~--~~~~~~~~~~~~~~~d~~i~i--S~sG~t~~~~~~~~~ak~~g~ 115 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGI-RTTVLTE--GGSTLTITLANLRPTDLMIGV--SVWRYLRDTVAALAGAAERGV 115 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTC-CEEEECC--CTHHHHHHHHTCCTTEEEEEE--CCSSCCHHHHHHHHHHHHTTC
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCC-CEEEecC--CchhHHHHHhcCCCCCEEEEE--eCCCCCHHHHHHHHHHHHCCC
Confidence 78999988654 334444445554 5666541 12333 2334556888874 2244321 112334556799
Q ss_pred cEEEec
Q 011969 391 PVCAVS 396 (474)
Q Consensus 391 PVia~~ 396 (474)
|+|+..
T Consensus 116 ~vi~IT 121 (187)
T 3sho_A 116 PTMALT 121 (187)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 999864
No 167
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=21.91 E-value=2.5e+02 Score=22.19 Aligned_cols=106 Identities=10% Similarity=0.067 Sum_probs=62.2
Q ss_pred CEEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHhc--CCc
Q 011969 317 RLLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGC--GLP 391 (474)
Q Consensus 317 ~~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama~--G~P 391 (474)
..+++|+.+.+. .+.+....+..+. .|.... +.++....+.. .|++++=.. ....-|..+++.+.. .+|
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~-~v~~~~---~~~~al~~~~~~~~dlvllD~~--l~~~~g~~l~~~l~~~~~~~ 77 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGI-SIDLAY---NCEEAIGKIFSNKYDLIFLEII--LSDGDGWTLCKKIRNVTTCP 77 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTC-EEEEES---SHHHHHHHHHHCCCSEEEEESE--ETTEEHHHHHHHHHTTCCCC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCC-EEEEEC---CHHHHHHHHHhcCCCEEEEeCC--CCCCCHHHHHHHHccCCCCC
Confidence 356788886543 2445555555554 343332 34555555543 588887211 111234566666542 678
Q ss_pred EEEecc-c---ccccccccCCcEEEeC--CHHHHHHHHHHHHh
Q 011969 392 VCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFK 428 (474)
Q Consensus 392 Via~~~-~---~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~ 428 (474)
||.... . ...+.++.|..+++.. +.++|...+..++.
T Consensus 78 ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 78 IVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp EEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 877542 2 2334566677899885 68899999988776
No 168
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=21.78 E-value=2.9e+02 Score=21.64 Aligned_cols=107 Identities=9% Similarity=0.045 Sum_probs=66.8
Q ss_pred CEEEEEEeCCCC-hHHHHHHHHHcCCC-cEEEecCCCCcccHHHHHh------------cccEEEeeccCCCCCCCchHH
Q 011969 317 RLLFIITGKGPD-KESYEEKIRRLRLK-RVAFRTMWLSAEDYPLLLG------------SADLGVCLHTSSSGLDLPMKV 382 (474)
Q Consensus 317 ~~~l~ivG~g~~-~~~~~~~~~~l~l~-~V~f~g~~v~~~~~~~~l~------------~adv~v~~~~~s~~e~~p~kv 382 (474)
..+++|+.+.+. ...+.+..++.+.. .|..... .++....+. ..|++++=. .....-|..+
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~---~~~al~~l~~~~~~~~~~~~~~~dlvi~D~--~l~~~~g~~~ 80 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCIT---GDQALDFLYQTGSYCNPDIAPRPAVILLDL--NLPGTDGREV 80 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECS---HHHHHHHHHTCCSSSCGGGCCCCSEEEECS--CCSSSCHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCceEEEECC---HHHHHHHHHhcccccCcccCCCCcEEEEEC--CCCCCCHHHH
Confidence 356777775543 35566667777652 4555533 677777765 368888721 1222345677
Q ss_pred HHHHh-----cCCcEEEecc-c---ccccccccCCcEEEeC--CHHHHHHHHHHHHh
Q 011969 383 VDMFG-----CGLPVCAVSY-S---CIEELVKVDKNGLLFS--SSSELADQLLMLFK 428 (474)
Q Consensus 383 ~Eama-----~G~PVia~~~-~---~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~ 428 (474)
++.+. ..+|||.... . ...+....+..+++.. +.++|...|..+++
T Consensus 81 ~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 81 LQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp HHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 77775 4578877542 2 2234455677888875 68899998888765
No 169
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=21.76 E-value=4.8e+02 Score=24.09 Aligned_cols=99 Identities=12% Similarity=0.032 Sum_probs=57.5
Q ss_pred HHHHHHHHHcCCCcEEEecCCCCcccHHHHHh--cccEEEeeccCCCCCCCchHHHHHH---hcCCcEEEeccccccccc
Q 011969 330 ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLG--SADLGVCLHTSSSGLDLPMKVVDMF---GCGLPVCAVSYSCIEELV 404 (474)
Q Consensus 330 ~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~--~adv~v~~~~~s~~e~~p~kv~Eam---a~G~PVia~~~~~~~e~v 404 (474)
.-+....+..|. .|.++|..+|.+++..... .+|++.+....+.....-..+++.+ ..++||+.-......++.
T Consensus 141 ~iva~~L~~~G~-~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~~~~~~v~vGG~~~~~~~~ 219 (258)
T 2i2x_B 141 NIVTALLRANGY-NVVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENGIKIPFACGGGAVNQDFV 219 (258)
T ss_dssp HHHHHHHHHTTC-EEEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTTTCCCCEEEESTTCCHHHH
T ss_pred HHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhcCCCCcEEEECccCCHHHH
Confidence 344555666665 6888887799999987776 4677777322222211122455554 234788876543334443
Q ss_pred ccCCcEEEeCCHHHHHHHHHHHHhC
Q 011969 405 KVDKNGLLFSSSSELADQLLMLFKG 429 (474)
Q Consensus 405 ~~~~~G~l~~~~~~la~~i~~l~~~ 429 (474)
..-+.-....|..+..+.+..+++.
T Consensus 220 ~~igad~~~~da~~av~~~~~l~~~ 244 (258)
T 2i2x_B 220 SQFALGVYGEEAADAPKIADAIIAG 244 (258)
T ss_dssp HTSTTEEECSSTTHHHHHHHHHHTT
T ss_pred HHcCCeEEECCHHHHHHHHHHHHcc
Confidence 3223333445777777777777763
No 170
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=21.72 E-value=1.9e+02 Score=28.22 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=20.0
Q ss_pred CCCCch---HHHHHHHHHhhCCCeEEEEecC
Q 011969 15 LGRSPR---MQYQALSLARQMSLEVDVVAYG 42 (474)
Q Consensus 15 ~g~~~r---~~~~a~~l~~~~g~eV~Vv~~~ 42 (474)
-||.+. ....|..++++ |..|.++..+
T Consensus 24 kGGvGKTt~a~~lA~~la~~-g~~vllid~D 53 (334)
T 3iqw_A 24 KGGVGKTTTSCSLAIQLAKV-RRSVLLLSTD 53 (334)
T ss_dssp STTSSHHHHHHHHHHHHTTS-SSCEEEEECC
T ss_pred CCCccHHHHHHHHHHHHHhC-CCcEEEEECC
Confidence 455554 45667888886 9999999866
No 171
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=21.62 E-value=4e+02 Score=23.10 Aligned_cols=53 Identities=13% Similarity=0.121 Sum_probs=29.0
Q ss_pred CCCCceEEEEEeCCCCCCchHHH-HHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEEEee
Q 011969 1 MGRRGRACVVVLGDLGRSPRMQY-QALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIHTMT 62 (474)
Q Consensus 1 m~~~~~~~i~~~~~~g~~~r~~~-~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~~~~ 62 (474)
|.++++++|. |+++.+.. .+..|+++ |++|.+++....... .. ..+++++...
T Consensus 1 M~~m~~ilIt-----GatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~-~~--~~~~~~~~~D 54 (227)
T 3dhn_A 1 MEKVKKIVLI-----GASGFVGSALLNEALNR-GFEVTAVVRHPEKIK-IE--NEHLKVKKAD 54 (227)
T ss_dssp --CCCEEEEE-----TCCHHHHHHHHHHHHTT-TCEEEEECSCGGGCC-CC--CTTEEEECCC
T ss_pred CCCCCEEEEE-----cCCchHHHHHHHHHHHC-CCEEEEEEcCcccch-hc--cCceEEEEec
Confidence 6666666544 22344444 35677776 999999886543221 11 2466665555
No 172
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=21.48 E-value=1.8e+02 Score=28.09 Aligned_cols=69 Identities=12% Similarity=0.142 Sum_probs=44.0
Q ss_pred CCCEEEEEEeCCCChHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHhcCCcE
Q 011969 315 YPRLLFIITGKGPDKESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGCGLPV 392 (474)
Q Consensus 315 ~~~~~l~ivG~g~~~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama~G~PV 392 (474)
.++++++=+-+ ++.+..++.+++++.+++ ..++.+++.. .|+++.. +|... -.--+.+|+..|++|
T Consensus 54 ~~~~~lvav~d-~~~~~a~~~a~~~g~~~~--------y~d~~ell~~~~iDaV~Ia-tP~~~--H~~~a~~al~aGkhV 121 (393)
T 4fb5_A 54 VERPRLVHLAE-ANAGLAEARAGEFGFEKA--------TADWRALIADPEVDVVSVT-TPNQF--HAEMAIAALEAGKHV 121 (393)
T ss_dssp SCCCEEEEEEC-C--TTHHHHHHHHTCSEE--------ESCHHHHHHCTTCCEEEEC-SCGGG--HHHHHHHHHHTTCEE
T ss_pred CCCcEEEEEEC-CCHHHHHHHHHHhCCCee--------cCCHHHHhcCCCCcEEEEC-CChHH--HHHHHHHHHhcCCeE
Confidence 36677765554 345556778888886421 3667777765 6888773 22211 233678999999999
Q ss_pred EEe
Q 011969 393 CAV 395 (474)
Q Consensus 393 ia~ 395 (474)
++=
T Consensus 122 l~E 124 (393)
T 4fb5_A 122 WCE 124 (393)
T ss_dssp EEC
T ss_pred EEc
Confidence 984
No 173
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=21.28 E-value=1.8e+02 Score=26.47 Aligned_cols=83 Identities=7% Similarity=0.026 Sum_probs=0.0
Q ss_pred CceEEEEEeCCCCCCchHHHHHHHHHhhCCC--eE-EEEecCCCCCCcceeccCCeEEEEeecCCCCCCCCCchhHHHHH
Q 011969 4 RGRACVVVLGDLGRSPRMQYQALSLARQMSL--EV-DVVAYGGSKPHAAILEHPSIHIHTMTQWPTIPRGLPKVLKPVLL 80 (474)
Q Consensus 4 ~~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~--eV-~Vv~~~~~~~~~~~~~~~gi~i~~~~~~~~~~~~~~~~~~~~~~ 80 (474)
|++++++..|. +......+....+.++ +| .|++........+.....||.++.+. +...+....+-..
T Consensus 1 m~rI~vl~SG~----g~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~~~~~A~~~gIp~~~~~-----~~~~~~r~~~~~~ 71 (216)
T 2ywr_A 1 MLKIGVLVSGR----GSNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHNVECKVIQ-----RKEFPSKKEFEER 71 (216)
T ss_dssp CEEEEEEECSC----CHHHHHHHHHHHTTSSCEEEEEEEESCTTCHHHHHHHHHTCCEEECC-----GGGSSSHHHHHHH
T ss_pred CCEEEEEEeCC----cHHHHHHHHHHHhCCCCCeEEEEEeCCCChHHHHHHHHcCCCEEEeC-----cccccchhhhhHH
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCEEEE
Q 011969 81 LLKPLIQFFMLLWFLCVKIASPDVFLV 107 (474)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~Dvi~~ 107 (474)
+...+.. .++|++++
T Consensus 72 ~~~~l~~------------~~~Dliv~ 86 (216)
T 2ywr_A 72 MALELKK------------KGVELVVL 86 (216)
T ss_dssp HHHHHHH------------TTCCEEEE
T ss_pred HHHHHHh------------cCCCEEEE
No 174
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=21.22 E-value=2.4e+02 Score=26.27 Aligned_cols=56 Identities=14% Similarity=-0.053 Sum_probs=36.1
Q ss_pred CcEEEecCCCCcc---cHHHHHhcccEEEeeccCCCCCCCchH--HHHHHhcCCcEEEecccc
Q 011969 342 KRVAFRTMWLSAE---DYPLLLGSADLGVCLHTSSSGLDLPMK--VVDMFGCGLPVCAVSYSC 399 (474)
Q Consensus 342 ~~V~f~g~~v~~~---~~~~~l~~adv~v~~~~~s~~e~~p~k--v~Eama~G~PVia~~~~~ 399 (474)
++|.|.|..+|.+ .....++.||+++..-+ +...+|.. +..|-..|.|+|..+...
T Consensus 160 P~Vv~FgE~lp~~~~~~a~~~~~~adl~lviGT--Sl~V~P~~~l~~~a~~~g~~~i~iN~~~ 220 (253)
T 1ma3_A 160 PRVVLFGEPLPQRTLFEAIEEAKHCDAFMVVGS--SLVVYPAAELPYIAKKAGAKMIIVNAEP 220 (253)
T ss_dssp EEECCBTSBCCHHHHHHHHHHHHHCSEEEEESC--CSCEETGGGHHHHHHHHTCEEEEEESSC
T ss_pred ceEEEeCCCCCHHHHHHHHHHHHhCCEEEEECC--CceeccHHHHHHHHHHcCCeEEEEeCCC
Confidence 5777888767654 34566778999999633 32223432 235556799999887543
No 175
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=21.13 E-value=1.4e+02 Score=26.94 Aligned_cols=65 Identities=6% Similarity=0.016 Sum_probs=38.3
Q ss_pred CCCCEEEEeCCCChhHHHHHHHHHhhCC-CcEEEEecCchhhhhhhccCCCchHHHHHHHHHHHHhhhcCEEEEeCHHHH
Q 011969 100 ASPDVFLVQNPPSVPTLVAVKWASSLRR-SAFIVDWHNFGYTLLSLSLGRRSHFVSIYRWIEKYYGKMANGCLCVTQAMQ 178 (474)
Q Consensus 100 ~~~Dvi~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~vi~vS~~~~ 178 (474)
.+.|.+++..+..-....++..++.+.. .+++...++..+.. .++ ...+|.++.......
T Consensus 70 ~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~----------------~l~---~~G~~~vi~p~~~~a 130 (234)
T 2aef_A 70 RGARAVIVDLESDSETIHCILGIRKIDESVRIIAEAERYENIE----------------QLR---MAGADQVISPFVISG 130 (234)
T ss_dssp TTCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEECSSGGGHH----------------HHH---HHTCSEEECHHHHHH
T ss_pred chhcEEEEcCCCcHHHHHHHHHHHHHCCCCeEEEEECCHhHHH----------------HHH---HCCCCEEECHHHHHH
Confidence 6899998876544444545566666654 46777777663210 111 125677777666666
Q ss_pred HHHHH
Q 011969 179 HELAQ 183 (474)
Q Consensus 179 ~~l~~ 183 (474)
..+.+
T Consensus 131 ~~l~~ 135 (234)
T 2aef_A 131 RLMSR 135 (234)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 176
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=21.07 E-value=3e+02 Score=21.52 Aligned_cols=109 Identities=12% Similarity=-0.022 Sum_probs=67.4
Q ss_pred CCEEEEEEeCCCC-hHHHHHHHHHcCC-CcEEEecCCCCcccHHHHHhc-------ccEEEeeccCCCCCCCchHHHHHH
Q 011969 316 PRLLFIITGKGPD-KESYEEKIRRLRL-KRVAFRTMWLSAEDYPLLLGS-------ADLGVCLHTSSSGLDLPMKVVDMF 386 (474)
Q Consensus 316 ~~~~l~ivG~g~~-~~~~~~~~~~l~l-~~V~f~g~~v~~~~~~~~l~~-------adv~v~~~~~s~~e~~p~kv~Eam 386 (474)
+..+++|+.+.+. ...+....+..+. ..|.... +.++....+.. .|++++=.. ....-|..+++.+
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~---~~~~a~~~l~~~~~~~~~~dlvi~D~~--l~~~~g~~~~~~l 82 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVT---SGNAAINKLNELYAAGRWPSIICIDIN--MPGINGWELIDLF 82 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEES---SHHHHHHHHHHHHTSSCCCSEEEEESS--CSSSCHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecC---CHHHHHHHHHHhhccCCCCCEEEEcCC--CCCCCHHHHHHHH
Confidence 4578888886543 2445555666664 2444443 36777777765 788888322 2223455666665
Q ss_pred h-------cCCcEEEeccc----ccccccccC-CcEEEeC--CHHHHHHHHHHHHhC
Q 011969 387 G-------CGLPVCAVSYS----CIEELVKVD-KNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 387 a-------~G~PVia~~~~----~~~e~v~~~-~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
. ...|+|..... ...+....+ ..+++.. +.++|.++|......
T Consensus 83 ~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 83 KQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp HHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred HHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 4 36777765432 223344455 6778875 699999999998875
No 177
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=20.95 E-value=2.9e+02 Score=21.31 Aligned_cols=105 Identities=12% Similarity=-0.028 Sum_probs=59.1
Q ss_pred EEEEEEeCCCCh-HHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--ccEEEeeccCCCCCCCchHHHHHHhc-----C
Q 011969 318 LLFIITGKGPDK-ESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSSGLDLPMKVVDMFGC-----G 389 (474)
Q Consensus 318 ~~l~ivG~g~~~-~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~~e~~p~kv~Eama~-----G 389 (474)
.+++|+.+.+.. +.+....+ .+. .|.... +.++....+.. .|++++= ......-|..+++.+.. +
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~-~~~-~v~~~~---~~~~a~~~l~~~~~dlvi~d--~~l~~~~g~~~~~~l~~~~~~~~ 77 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS-GEF-DCTTAA---DGASGLQQALAHPPDVLISD--VNMDGMDGYALCGHFRSEPTLKH 77 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT-TTS-EEEEES---SHHHHHHHHHHSCCSEEEEC--SSCSSSCHHHHHHHHHHSTTTTT
T ss_pred CEEEEEcCCHHHHHHHHHHHh-CCc-EEEEEC---CHHHHHHHHhcCCCCEEEEe--CCCCCCCHHHHHHHHHhCCccCC
Confidence 467777754432 23333333 222 344432 35666665544 5777772 11223345566666653 6
Q ss_pred CcEEEeccc---ccccccccCCcEEEeC--CHHHHHHHHHHHHhC
Q 011969 390 LPVCAVSYS---CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 390 ~PVia~~~~---~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
+|||..... ...+....+..+++.. +.++|.+.|..+++.
T Consensus 78 ~pii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 78 IPVIFVSGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp CCEEEEESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhh
Confidence 888875422 1234455667778875 699999999999874
No 178
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=20.88 E-value=1.1e+02 Score=27.87 Aligned_cols=63 Identities=16% Similarity=0.057 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCCcEEEecC-CCCcccHHHHHhcccEEEeeccCCCCC-----------CCchHHHHHHhcCCcEEEecc
Q 011969 330 ESYEEKIRRLRLKRVAFRTM-WLSAEDYPLLLGSADLGVCLHTSSSGL-----------DLPMKVVDMFGCGLPVCAVSY 397 (474)
Q Consensus 330 ~~~~~~~~~l~l~~V~f~g~-~v~~~~~~~~l~~adv~v~~~~~s~~e-----------~~p~kv~Eama~G~PVia~~~ 397 (474)
.++.+..+++|. .+..+.- --+.++....+..||..++| . |+ ++-..+-|+...|+|++.+..
T Consensus 47 ~s~~~a~~~lG~-~v~~~~i~~~~~~~~~~~l~~ad~I~l~---G-G~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sA 121 (206)
T 3l4e_A 47 EAGKKALESLGL-LVEELDIATESLGEITTKLRKNDFIYVT---G-GNTFFLLQELKRTGADKLILEEIAAGKLYIGESA 121 (206)
T ss_dssp HHHHHHHHHTTC-EEEECCTTTSCHHHHHHHHHHSSEEEEC---C-SCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETH
T ss_pred HHHHHHHHHcCC-eEEEEEecCCChHHHHHHHHhCCEEEEC---C-CCHHHHHHHHHHCChHHHHHHHHHcCCeEEEECH
Confidence 567777888887 3444420 01356777889999999994 3 32 233477888889999999874
No 179
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=20.84 E-value=95 Score=28.44 Aligned_cols=41 Identities=15% Similarity=-0.043 Sum_probs=27.1
Q ss_pred CCCceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCC
Q 011969 2 GRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGG 43 (474)
Q Consensus 2 ~~~~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~ 43 (474)
.+.|++.+.+.|..+...+....+..|.+. |++|+|+....
T Consensus 3 l~~k~IllgiTGsiaayk~~~~ll~~L~~~-g~eV~vv~T~~ 43 (207)
T 3mcu_A 3 LKGKRIGFGFTGSHCTYEEVMPHLEKLIAE-GAEVRPVVSYT 43 (207)
T ss_dssp CTTCEEEEEECSCGGGGTTSHHHHHHHHHT-TCEEEEEECC-
T ss_pred CCCCEEEEEEEChHHHHHHHHHHHHHHHhC-CCEEEEEEehH
Confidence 455678877777643222245556677775 99999998664
No 180
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=20.79 E-value=3.3e+02 Score=25.07 Aligned_cols=40 Identities=15% Similarity=0.013 Sum_probs=21.0
Q ss_pred CCCCceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 011969 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYG 42 (474)
Q Consensus 1 m~~~~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~ 42 (474)
|.+++.++|..-.|= -.-.+.-....++++ |++|.|++..
T Consensus 1 ~~~~~vL~v~aHPDD-e~l~~Ggtia~~~~~-G~~V~vv~lT 40 (242)
T 2ixd_A 1 MSGLHILAFGAHADD-VEIGMAGTIAKYTKQ-GYEVGICDLT 40 (242)
T ss_dssp -CCCSEEEEESSTTH-HHHHHHHHHHHHHHT-TCCEEEEEEE
T ss_pred CCCccEEEEEeCCCh-HHHhHHHHHHHHHHC-CCeEEEEEEc
Confidence 566555555544430 001222334556676 9999999843
No 181
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=20.78 E-value=3e+02 Score=21.40 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=61.8
Q ss_pred EEEEEEeCCCC-hHHHHHHHHHcCCCcEEEecCCCCcccHHHHHhc--ccEEEeeccCCC---CCCCchHHHHHHh---c
Q 011969 318 LLFIITGKGPD-KESYEEKIRRLRLKRVAFRTMWLSAEDYPLLLGS--ADLGVCLHTSSS---GLDLPMKVVDMFG---C 388 (474)
Q Consensus 318 ~~l~ivG~g~~-~~~~~~~~~~l~l~~V~f~g~~v~~~~~~~~l~~--adv~v~~~~~s~---~e~~p~kv~Eama---~ 388 (474)
.+++|+.+.+. .+.+.+..++.+. .|.... +.++....+.. .|++++=..... ...-|..+++.+. .
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~-~v~~~~---~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~ 79 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFS-KVITLS---SPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYR 79 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSS-EEEEEC---CHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCT
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCc-EEEEeC---CHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCc
Confidence 46777775443 2344555555444 344332 35666666665 477776221110 0223455555543 4
Q ss_pred CCcEEEec-cc---ccccccccCCcEEEeC--CHHHHHHHHHHHHhC
Q 011969 389 GLPVCAVS-YS---CIEELVKVDKNGLLFS--SSSELADQLLMLFKG 429 (474)
Q Consensus 389 G~PVia~~-~~---~~~e~v~~~~~G~l~~--~~~~la~~i~~l~~~ 429 (474)
.+|||... .. ...+.+..+..+++.. +.++|.+.|..+++.
T Consensus 80 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 80 DLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp TCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 78888753 22 2334455677888874 699999999998875
No 182
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=20.54 E-value=81 Score=30.50 Aligned_cols=52 Identities=17% Similarity=0.088 Sum_probs=31.5
Q ss_pred CCceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecCCCCCCcceeccCCeEEE
Q 011969 3 RRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYGGSKPHAAILEHPSIHIH 59 (474)
Q Consensus 3 ~~~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~~~~~~~~~~~~~gi~i~ 59 (474)
.+++++++..|. ..|.-.|.-|.++ |++|.+.=.....+..+.++..|++++
T Consensus 3 ~~~~i~~iGiGg----~Gms~~A~~L~~~-G~~V~~~D~~~~~~~~~~L~~~gi~v~ 54 (326)
T 3eag_A 3 AMKHIHIIGIGG----TFMGGLAAIAKEA-GFEVSGCDAKMYPPMSTQLEALGIDVY 54 (326)
T ss_dssp CCCEEEEESCCS----HHHHHHHHHHHHT-TCEEEEEESSCCTTHHHHHHHTTCEEE
T ss_pred CCcEEEEEEECH----HHHHHHHHHHHhC-CCEEEEEcCCCCcHHHHHHHhCCCEEE
Confidence 355677666664 3454456667776 999998765433222233455688765
No 183
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=20.26 E-value=2.9e+02 Score=26.98 Aligned_cols=84 Identities=14% Similarity=-0.042 Sum_probs=49.4
Q ss_pred CcEEEecCCCCcc---cHHHHHhcccEEEeeccCCCCCCCchHHHHHHhcCCcEEEecccccccccccCCcEEEe-CCHH
Q 011969 342 KRVAFRTMWLSAE---DYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF-SSSS 417 (474)
Q Consensus 342 ~~V~f~g~~v~~~---~~~~~l~~adv~v~~~~~s~~e~~p~kv~Eama~G~PVia~~~~~~~e~v~~~~~G~l~-~~~~ 417 (474)
+.|.|.|.-+|.+ ......+.||++++.-++-.-.....-+..|...|.|++..+..... . +...-+.+ .+.+
T Consensus 183 PdVV~FGE~lP~~~~~~a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~~~t~--~-d~~adl~i~g~~~ 259 (318)
T 3k35_A 183 DTILDWEDSLPDRDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTK--H-DRHADLRIHGYVD 259 (318)
T ss_dssp ECCCCTTCCCCHHHHHHHHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECSSCCT--T-GGGCSEEECSCHH
T ss_pred CCEEEccCcCCHHHHHHHHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECCCCCC--C-CCcccEEEeCCHH
Confidence 4677777767654 34456778999999643333332323334677889999888754322 1 22223344 4677
Q ss_pred HHHHHHHHHHh
Q 011969 418 ELADQLLMLFK 428 (474)
Q Consensus 418 ~la~~i~~l~~ 428 (474)
+....|.+.+.
T Consensus 260 evl~~L~~~Lg 270 (318)
T 3k35_A 260 EVMTRLMKHLG 270 (318)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 66666655553
No 184
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=20.23 E-value=2.6e+02 Score=25.89 Aligned_cols=80 Identities=18% Similarity=0.093 Sum_probs=46.1
Q ss_pred CcEEEecCCCCcc---cHHHHHhcccEEEeeccCCCCCCCchH--HHHHHhcCCcEEEecccccccccccCCcEEEe-CC
Q 011969 342 KRVAFRTMWLSAE---DYPLLLGSADLGVCLHTSSSGLDLPMK--VVDMFGCGLPVCAVSYSCIEELVKVDKNGLLF-SS 415 (474)
Q Consensus 342 ~~V~f~g~~v~~~---~~~~~l~~adv~v~~~~~s~~e~~p~k--v~Eama~G~PVia~~~~~~~e~v~~~~~G~l~-~~ 415 (474)
++|.|.|..+|.+ .....++.||+++..-+ +...+|.. +..+-..|.|+|..+.....- +....+.+ .+
T Consensus 157 P~vv~FgE~lp~~~~~~a~~~~~~adl~lviGT--Sl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~---d~~~~~~i~~~ 231 (246)
T 1yc5_A 157 PNIVFFGENLPQDALREAIGLSSRASLMIVLGS--SLVVYPAAELPLITVRSGGKLVIVNLGETPF---DDIATLKYNMD 231 (246)
T ss_dssp EEECCBTSBCCHHHHHHHHHHHHHCSEEEEESC--CSCEETGGGHHHHHHHHTCEEEEECSSCCTT---GGGCSEEECSC
T ss_pred cceEECCCCCCHHHHHHHHHHHhcCCEEEEECC--CCcchhHHHHHHHHHHcCCeEEEEeCCCCCC---CcceeEEEeCC
Confidence 4777777766643 34566778999999633 32223432 234556799999988543321 11223444 46
Q ss_pred HHHHHHHHHHH
Q 011969 416 SSELADQLLML 426 (474)
Q Consensus 416 ~~~la~~i~~l 426 (474)
.++....|.+.
T Consensus 232 ~~~~l~~l~~~ 242 (246)
T 1yc5_A 232 VVEFARRVMEE 242 (246)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66655555443
No 185
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=20.15 E-value=45 Score=32.21 Aligned_cols=36 Identities=25% Similarity=0.098 Sum_probs=22.7
Q ss_pred CCCCceEEEEEeCCCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 011969 1 MGRRGRACVVVLGDLGRSPRMQYQALSLARQMSLEVDVVAYG 42 (474)
Q Consensus 1 m~~~~~~~i~~~~~~g~~~r~~~~a~~l~~~~g~eV~Vv~~~ 42 (474)
|++++++.|+..|.+| ...+..|++. |++|.++...
T Consensus 1 mm~~mki~iiG~G~~G-----~~~a~~L~~~-g~~V~~~~r~ 36 (359)
T 1bg6_A 1 MIESKTYAVLGLGNGG-----HAFAAYLALK-GQSVLAWDID 36 (359)
T ss_dssp ---CCEEEEECCSHHH-----HHHHHHHHHT-TCEEEEECSC
T ss_pred CCCcCeEEEECCCHHH-----HHHHHHHHhC-CCEEEEEeCC
Confidence 6666678888776554 2346677886 9999887643
Done!