Query 011970
Match_columns 474
No_of_seqs 247 out of 590
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 07:13:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011970.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011970hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 6.1E-53 1.3E-57 424.2 29.3 321 86-473 113-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 3.3E-48 7.2E-53 393.6 22.5 301 49-473 151-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 5.2E-47 1.1E-51 381.4 25.5 285 118-474 105-438 (480)
4 KOG0295 WD40 repeat-containing 100.0 1.6E-41 3.5E-46 340.2 24.4 281 123-473 103-404 (406)
5 KOG0286 G-protein beta subunit 100.0 1.7E-39 3.8E-44 318.6 32.9 285 122-473 49-343 (343)
6 KOG0279 G protein beta subunit 100.0 8.3E-39 1.8E-43 312.2 33.6 295 120-473 7-311 (315)
7 KOG0272 U4/U6 small nuclear ri 100.0 7.9E-41 1.7E-45 339.9 19.5 235 185-474 175-417 (459)
8 cd00200 WD40 WD40 domain, foun 100.0 9.5E-38 2.1E-42 290.0 36.9 284 121-473 2-289 (289)
9 PLN00181 protein SPA1-RELATED; 100.0 9.5E-38 2.1E-42 350.9 41.1 316 107-474 457-792 (793)
10 KOG0295 WD40 repeat-containing 100.0 6.2E-39 1.3E-43 321.6 24.6 278 86-397 106-404 (406)
11 KOG0266 WD40 repeat-containing 100.0 9E-38 1.9E-42 331.6 33.5 287 121-473 151-452 (456)
12 KOG0319 WD40-repeat-containing 100.0 8.1E-39 1.8E-43 341.7 24.9 223 197-473 376-617 (775)
13 KOG0319 WD40-repeat-containing 100.0 1.1E-37 2.3E-42 333.1 29.6 322 86-474 103-576 (775)
14 KOG0315 G-protein beta subunit 100.0 1.4E-36 3E-41 293.1 29.1 280 99-412 11-301 (311)
15 KOG0263 Transcription initiati 100.0 1.9E-37 4.2E-42 333.4 24.1 276 119-474 369-648 (707)
16 KOG0291 WD40-repeat-containing 100.0 2.2E-35 4.8E-40 315.9 37.6 351 60-474 110-507 (893)
17 KOG0279 G protein beta subunit 100.0 1.1E-35 2.3E-40 290.4 30.8 280 87-399 14-313 (315)
18 KOG0266 WD40 repeat-containing 100.0 5.2E-36 1.1E-40 318.1 29.3 239 186-474 160-408 (456)
19 cd00200 WD40 WD40 domain, foun 100.0 2.7E-34 5.8E-39 266.8 35.9 276 87-397 8-289 (289)
20 KOG0291 WD40-repeat-containing 100.0 2E-34 4.3E-39 308.6 38.6 335 89-474 266-611 (893)
21 KOG0286 G-protein beta subunit 100.0 2.1E-34 4.7E-39 282.8 32.0 289 63-397 45-343 (343)
22 KOG0273 Beta-transducin family 100.0 5.6E-34 1.2E-38 293.1 32.7 318 85-473 175-521 (524)
23 KOG0285 Pleiotropic regulator 100.0 5.4E-34 1.2E-38 285.7 25.5 297 113-473 137-437 (460)
24 KOG0273 Beta-transducin family 100.0 8.6E-34 1.9E-38 291.7 27.6 283 123-474 173-481 (524)
25 KOG0281 Beta-TrCP (transducin 100.0 1.2E-35 2.5E-40 296.8 13.1 269 88-474 197-476 (499)
26 PLN00181 protein SPA1-RELATED; 100.0 9.1E-33 2E-37 310.6 38.0 277 85-398 480-792 (793)
27 KOG0263 Transcription initiati 100.0 5.4E-34 1.2E-38 306.9 25.7 277 81-404 371-654 (707)
28 KOG0265 U5 snRNP-specific prot 100.0 4.5E-33 9.8E-38 274.2 28.0 286 121-471 40-334 (338)
29 KOG0274 Cdc4 and related F-box 100.0 3.4E-33 7.4E-38 301.5 29.2 272 95-411 215-494 (537)
30 KOG0645 WD40 repeat protein [G 100.0 1.6E-32 3.4E-37 267.5 30.1 283 120-474 6-310 (312)
31 KOG0274 Cdc4 and related F-box 100.0 4.4E-33 9.5E-38 300.6 28.9 273 124-474 203-481 (537)
32 KOG0281 Beta-TrCP (transducin 100.0 4E-35 8.7E-40 293.0 11.1 226 183-474 195-427 (499)
33 KOG0315 G-protein beta subunit 100.0 1E-32 2.2E-37 266.3 27.2 261 143-474 12-287 (311)
34 KOG0284 Polyadenylation factor 100.0 2.3E-34 5E-39 291.9 16.4 275 129-473 96-378 (464)
35 KOG0313 Microtubule binding pr 100.0 1E-31 2.2E-36 271.0 27.9 357 29-473 35-416 (423)
36 KOG0285 Pleiotropic regulator 100.0 1.4E-32 3.1E-37 275.5 20.9 235 183-473 149-387 (460)
37 KOG0276 Vesicle coat complex C 100.0 6E-32 1.3E-36 285.0 22.5 233 187-474 15-256 (794)
38 KOG0282 mRNA splicing factor [ 100.0 3.5E-32 7.5E-37 280.6 17.4 288 118-473 204-503 (503)
39 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 4.5E-29 9.8E-34 241.1 38.2 277 98-411 1-291 (300)
40 KOG0276 Vesicle coat complex C 100.0 8.1E-31 1.8E-35 276.5 26.3 276 128-471 12-295 (794)
41 KOG0292 Vesicle coat complex C 100.0 8.1E-31 1.8E-35 284.2 26.2 273 128-469 8-316 (1202)
42 KOG0318 WD40 repeat stress pro 100.0 1.7E-29 3.8E-34 262.7 33.8 303 99-474 161-559 (603)
43 KOG0275 Conserved WD40 repeat- 100.0 1.4E-31 3.1E-36 265.8 16.6 290 121-473 205-507 (508)
44 KOG0293 WD40 repeat-containing 100.0 8.1E-31 1.7E-35 266.6 22.2 289 118-474 214-512 (519)
45 KOG0296 Angio-associated migra 100.0 1E-29 2.2E-34 255.5 29.5 322 67-473 58-396 (399)
46 KOG0292 Vesicle coat complex C 100.0 4.2E-31 9E-36 286.4 20.8 240 180-474 5-279 (1202)
47 KOG0643 Translation initiation 100.0 2.5E-30 5.5E-35 251.8 22.3 292 124-472 6-314 (327)
48 PTZ00421 coronin; Provisional 100.0 2.5E-29 5.4E-34 269.7 31.9 237 190-474 25-289 (493)
49 KOG0284 Polyadenylation factor 100.0 8.1E-31 1.8E-35 266.2 17.8 334 25-398 32-379 (464)
50 KOG0645 WD40 repeat protein [G 100.0 4E-29 8.7E-34 243.7 28.6 229 184-473 13-259 (312)
51 KOG0265 U5 snRNP-specific prot 100.0 4E-29 8.7E-34 246.4 25.5 273 87-395 46-334 (338)
52 KOG0306 WD40-repeat-containing 100.0 1.2E-28 2.6E-33 264.3 31.3 296 105-473 341-662 (888)
53 PTZ00421 coronin; Provisional 100.0 2.7E-28 5.8E-33 261.8 34.1 257 132-411 23-302 (493)
54 KOG0316 Conserved WD40 repeat- 100.0 1.7E-29 3.7E-34 242.6 20.8 233 185-474 17-256 (307)
55 KOG0301 Phospholipase A2-activ 100.0 4.8E-29 1E-33 265.7 25.2 279 119-473 5-286 (745)
56 KOG0318 WD40 repeat stress pro 100.0 3E-27 6.4E-32 246.1 36.3 322 87-474 189-601 (603)
57 KOG0278 Serine/threonine kinas 100.0 1.5E-29 3.2E-34 244.7 17.4 277 87-474 13-296 (334)
58 KOG0288 WD40 repeat protein Ti 100.0 2.6E-29 5.7E-34 255.5 18.6 286 123-473 170-459 (459)
59 PTZ00420 coronin; Provisional 100.0 9.3E-28 2E-32 260.6 31.7 227 204-474 50-292 (568)
60 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 2.6E-26 5.6E-31 221.8 35.3 258 161-474 11-278 (300)
61 KOG0316 Conserved WD40 repeat- 100.0 1.2E-27 2.5E-32 230.1 24.6 283 119-472 8-296 (307)
62 KOG0306 WD40-repeat-containing 100.0 1.8E-27 4E-32 255.2 28.4 277 84-398 369-663 (888)
63 KOG0275 Conserved WD40 repeat- 100.0 8.6E-29 1.9E-33 246.0 16.3 237 185-472 213-464 (508)
64 PTZ00420 coronin; Provisional 100.0 1.3E-26 2.9E-31 251.6 34.5 255 104-377 50-325 (568)
65 KOG1446 Histone H3 (Lys4) meth 100.0 8.7E-27 1.9E-31 231.0 28.8 238 185-474 14-261 (311)
66 KOG0288 WD40 repeat protein Ti 100.0 6.2E-28 1.4E-32 245.6 18.0 274 87-396 174-458 (459)
67 KOG0277 Peroxisomal targeting 100.0 1.8E-27 3.9E-32 230.7 20.1 280 133-473 12-307 (311)
68 KOG0293 WD40 repeat-containing 100.0 4.1E-27 8.9E-32 239.6 23.1 303 60-399 196-513 (519)
69 KOG0310 Conserved WD40 repeat- 100.0 1E-26 2.2E-31 240.5 23.9 270 130-470 27-304 (487)
70 KOG0301 Phospholipase A2-activ 100.0 1.6E-26 3.5E-31 246.5 25.9 279 61-399 2-288 (745)
71 KOG0283 WD40 repeat-containing 100.0 8.9E-27 1.9E-31 252.8 23.9 241 184-474 266-575 (712)
72 KOG0305 Anaphase promoting com 100.0 2.8E-26 6E-31 242.7 26.6 255 161-474 197-460 (484)
73 KOG0313 Microtubule binding pr 99.9 2.1E-26 4.5E-31 232.6 23.0 251 162-474 84-375 (423)
74 KOG0640 mRNA cleavage stimulat 99.9 4.5E-26 9.9E-31 225.8 22.8 292 120-473 104-424 (430)
75 KOG0296 Angio-associated migra 99.9 1.7E-25 3.7E-30 225.2 27.2 293 67-399 89-398 (399)
76 KOG0308 Conserved WD40 repeat- 99.9 8.7E-27 1.9E-31 247.2 18.0 229 190-471 29-281 (735)
77 KOG0641 WD40 repeat protein [G 99.9 8.7E-25 1.9E-29 209.4 29.6 298 119-473 24-347 (350)
78 KOG1407 WD40 repeat protein [F 99.9 9.1E-25 2E-29 212.5 28.0 281 123-472 15-308 (313)
79 KOG1446 Histone H3 (Lys4) meth 99.9 4.4E-24 9.5E-29 211.8 30.5 274 129-472 14-300 (311)
80 KOG0282 mRNA splicing factor [ 99.9 4.5E-26 9.7E-31 235.5 16.4 290 68-397 197-503 (503)
81 KOG0772 Uncharacterized conser 99.9 5.9E-25 1.3E-29 228.6 24.3 308 71-472 152-484 (641)
82 KOG0277 Peroxisomal targeting 99.9 7.4E-25 1.6E-29 212.6 22.0 282 77-397 12-307 (311)
83 KOG0643 Translation initiation 99.9 2.9E-24 6.3E-29 209.6 26.2 274 87-398 9-316 (327)
84 KOG0305 Anaphase promoting com 99.9 2.5E-24 5.3E-29 228.0 27.8 264 101-401 190-463 (484)
85 KOG0300 WD40 repeat-containing 99.9 7E-25 1.5E-29 217.8 21.7 315 77-474 137-475 (481)
86 KOG1407 WD40 repeat protein [F 99.9 4.9E-24 1.1E-28 207.4 25.5 299 54-398 6-310 (313)
87 KOG0973 Histone transcription 99.9 2.8E-24 6E-29 238.4 27.0 288 124-472 8-352 (942)
88 COG2319 FOG: WD40 repeat [Gene 99.9 1.4E-21 2.9E-26 188.0 41.4 322 84-473 61-398 (466)
89 KOG1539 WD repeat protein [Gen 99.9 3.1E-23 6.8E-28 224.9 31.7 321 88-474 244-647 (910)
90 KOG0299 U3 snoRNP-associated p 99.9 7.9E-24 1.7E-28 218.0 24.5 269 126-464 139-444 (479)
91 KOG0310 Conserved WD40 repeat- 99.9 1.5E-24 3.3E-29 224.4 19.4 232 186-473 27-266 (487)
92 KOG0278 Serine/threonine kinas 99.9 4.3E-25 9.3E-30 213.9 14.1 243 67-344 53-300 (334)
93 KOG0268 Sof1-like rRNA process 99.9 9.1E-25 2E-29 219.9 15.1 279 121-473 59-343 (433)
94 KOG0308 Conserved WD40 repeat- 99.9 2.4E-24 5.1E-29 228.8 18.9 239 139-408 35-295 (735)
95 COG2319 FOG: WD40 repeat [Gene 99.9 5.1E-21 1.1E-25 184.0 38.9 300 102-474 43-358 (466)
96 KOG0299 U3 snoRNP-associated p 99.9 4E-23 8.7E-28 212.8 23.9 267 85-377 139-444 (479)
97 KOG0772 Uncharacterized conser 99.9 5.7E-24 1.2E-28 221.3 17.5 230 185-465 167-429 (641)
98 KOG0267 Microtubule severing p 99.9 4.7E-25 1E-29 236.2 9.7 219 196-467 38-260 (825)
99 KOG0300 WD40 repeat-containing 99.9 2.2E-23 4.9E-28 207.2 20.1 291 100-474 126-427 (481)
100 KOG0283 WD40 repeat-containing 99.9 8.4E-23 1.8E-27 222.0 26.4 243 124-398 262-575 (712)
101 KOG0289 mRNA splicing factor [ 99.9 2.1E-22 4.5E-27 206.4 25.2 264 98-397 231-504 (506)
102 KOG1408 WD40 repeat protein [F 99.9 3.8E-22 8.3E-27 213.4 28.0 319 91-473 327-711 (1080)
103 KOG0268 Sof1-like rRNA process 99.9 1.4E-23 3E-28 211.3 15.8 298 49-402 43-348 (433)
104 KOG1332 Vesicle coat complex C 99.9 5.8E-23 1.3E-27 198.5 18.8 226 196-473 21-284 (299)
105 KOG1063 RNA polymerase II elon 99.9 2.4E-22 5.2E-27 214.7 24.4 326 64-473 182-646 (764)
106 KOG2096 WD40 repeat protein [G 99.9 4.6E-22 1E-26 198.0 24.6 299 109-473 62-400 (420)
107 KOG0973 Histone transcription 99.9 4.9E-22 1.1E-26 220.6 27.2 282 84-402 8-358 (942)
108 KOG1063 RNA polymerase II elon 99.9 1.5E-21 3.2E-26 208.7 27.6 325 88-473 101-600 (764)
109 KOG1539 WD repeat protein [Gen 99.9 2.8E-21 6.2E-26 209.8 29.4 305 101-474 175-605 (910)
110 KOG0289 mRNA splicing factor [ 99.9 6.1E-22 1.3E-26 203.0 22.5 233 188-473 220-460 (506)
111 KOG0641 WD40 repeat protein [G 99.9 1.6E-20 3.5E-25 180.2 27.7 239 185-473 32-301 (350)
112 KOG2048 WD40 repeat protein [G 99.9 1.7E-20 3.7E-25 200.3 30.2 277 123-471 20-315 (691)
113 KOG0264 Nucleosome remodeling 99.9 3E-21 6.6E-26 198.6 23.3 252 127-474 122-403 (422)
114 KOG0639 Transducin-like enhanc 99.9 8.2E-22 1.8E-26 204.8 18.8 282 120-473 412-702 (705)
115 KOG0267 Microtubule severing p 99.9 3.4E-23 7.3E-28 222.0 8.7 220 198-474 4-225 (825)
116 KOG0640 mRNA cleavage stimulat 99.9 1.9E-21 4.1E-26 193.1 20.3 277 87-397 111-424 (430)
117 KOG1408 WD40 repeat protein [F 99.9 2.8E-21 6E-26 206.8 22.4 266 98-400 392-714 (1080)
118 KOG0294 WD40 repeat-containing 99.9 5.9E-21 1.3E-25 189.8 23.0 234 179-474 36-280 (362)
119 KOG4283 Transcription-coupled 99.9 1.4E-20 3E-25 186.1 25.3 328 38-473 5-363 (397)
120 KOG1036 Mitotic spindle checkp 99.9 6.8E-20 1.5E-24 181.7 26.8 273 124-465 8-294 (323)
121 KOG2055 WD40 repeat protein [G 99.9 3.1E-20 6.7E-25 191.7 25.0 292 120-474 202-511 (514)
122 KOG0647 mRNA export protein (c 99.9 6.8E-20 1.5E-24 181.5 26.0 274 123-463 21-311 (347)
123 KOG2048 WD40 repeat protein [G 99.9 6E-19 1.3E-23 188.6 34.7 223 79-321 62-299 (691)
124 KOG0650 WD40 repeat nucleolar 99.9 2.8E-20 6E-25 196.6 23.8 312 84-472 396-732 (733)
125 KOG0647 mRNA export protein (c 99.9 3.3E-20 7.1E-25 183.7 22.6 240 188-473 30-279 (347)
126 KOG2445 Nuclear pore complex c 99.9 5.6E-20 1.2E-24 182.5 24.2 231 188-473 16-316 (361)
127 KOG2096 WD40 repeat protein [G 99.9 1.4E-19 3.1E-24 180.3 25.1 277 87-397 85-400 (420)
128 KOG0646 WD40 repeat protein [G 99.8 5.8E-20 1.3E-24 189.8 21.2 278 100-409 9-317 (476)
129 KOG0269 WD40 repeat-containing 99.8 2.2E-20 4.8E-25 201.7 17.7 222 197-469 99-334 (839)
130 KOG1274 WD40 repeat protein [G 99.8 3.6E-19 7.9E-24 195.2 25.1 233 190-474 18-261 (933)
131 KOG0294 WD40 repeat-containing 99.8 7.2E-19 1.6E-23 175.1 22.3 234 86-342 41-281 (362)
132 KOG0646 WD40 repeat protein [G 99.8 8.1E-19 1.8E-23 181.4 23.1 257 161-474 18-306 (476)
133 KOG4283 Transcription-coupled 99.8 1.2E-18 2.6E-23 172.4 23.0 204 185-403 43-280 (397)
134 KOG1332 Vesicle coat complex C 99.8 3.8E-19 8.3E-24 172.2 18.0 231 98-346 23-292 (299)
135 PRK11028 6-phosphogluconolacto 99.8 2.2E-17 4.8E-22 166.7 31.0 272 101-403 5-310 (330)
136 KOG1274 WD40 repeat protein [G 99.8 8.6E-18 1.9E-22 184.5 28.4 239 127-400 11-263 (933)
137 KOG2106 Uncharacterized conser 99.8 4.9E-17 1.1E-21 169.6 32.4 320 88-474 246-625 (626)
138 KOG2106 Uncharacterized conser 99.8 5.4E-17 1.2E-21 169.3 32.4 309 88-473 154-475 (626)
139 PRK11028 6-phosphogluconolacto 99.8 4.2E-17 9.1E-22 164.7 30.0 263 161-473 12-302 (330)
140 PRK01742 tolB translocation pr 99.8 8.1E-18 1.8E-22 177.4 25.3 219 161-412 184-416 (429)
141 KOG0321 WD40 repeat-containing 99.8 2.3E-18 5.1E-23 183.2 20.7 297 98-474 64-390 (720)
142 KOG2445 Nuclear pore complex c 99.8 1.1E-17 2.3E-22 166.3 24.0 258 123-412 7-334 (361)
143 KOG0269 WD40 repeat-containing 99.8 1.5E-19 3.2E-24 195.4 11.3 192 231-474 92-295 (839)
144 KOG2055 WD40 repeat protein [G 99.8 1.9E-17 4.1E-22 171.2 25.7 280 88-398 213-511 (514)
145 PRK01742 tolB translocation pr 99.8 7.9E-18 1.7E-22 177.5 23.3 233 107-369 183-426 (429)
146 KOG0264 Nucleosome remodeling 99.8 4.2E-18 9.1E-23 175.5 20.4 245 86-345 122-407 (422)
147 KOG0303 Actin-binding protein 99.8 1.1E-17 2.4E-22 170.5 23.1 221 169-473 66-292 (472)
148 KOG1036 Mitotic spindle checkp 99.8 3.6E-17 7.8E-22 162.5 23.4 239 187-474 15-261 (323)
149 KOG2919 Guanine nucleotide-bin 99.8 3.4E-17 7.3E-22 163.7 21.5 275 130-466 50-361 (406)
150 KOG4328 WD40 protein [Function 99.8 4.1E-17 8.8E-22 168.6 22.0 289 126-474 183-494 (498)
151 KOG1273 WD40 repeat protein [G 99.8 6.2E-17 1.3E-21 161.5 22.3 284 119-473 16-320 (405)
152 KOG1034 Transcriptional repres 99.8 9E-17 2E-21 160.9 22.0 226 198-473 105-381 (385)
153 KOG0302 Ribosome Assembly prot 99.8 1.8E-17 3.9E-22 168.2 16.6 201 197-474 164-377 (440)
154 KOG0639 Transducin-like enhanc 99.8 6E-17 1.3E-21 168.9 20.3 275 85-398 416-703 (705)
155 KOG0270 WD40 repeat-containing 99.7 4E-17 8.7E-22 168.2 18.4 227 197-474 191-448 (463)
156 KOG2919 Guanine nucleotide-bin 99.7 7.5E-17 1.6E-21 161.3 19.7 234 190-474 54-326 (406)
157 KOG4378 Nuclear protein COP1 [ 99.7 3.8E-17 8.2E-22 170.2 18.0 253 162-474 13-279 (673)
158 KOG0270 WD40 repeat-containing 99.7 7.5E-17 1.6E-21 166.2 18.8 200 189-404 247-454 (463)
159 KOG0322 G-protein beta subunit 99.7 7.1E-17 1.5E-21 157.9 16.1 301 74-474 3-322 (323)
160 KOG1517 Guanine nucleotide bin 99.7 3.7E-16 8E-21 173.5 23.4 305 108-473 1050-1379(1387)
161 KOG4378 Nuclear protein COP1 [ 99.7 5E-16 1.1E-20 161.9 22.3 276 101-412 5-294 (673)
162 KOG4328 WD40 protein [Function 99.7 4E-16 8.7E-21 161.4 20.8 266 98-397 200-493 (498)
163 PRK03629 tolB translocation pr 99.7 3.5E-15 7.7E-20 157.7 28.6 236 109-368 180-427 (429)
164 KOG0650 WD40 repeat nucleolar 99.7 3.2E-16 7E-21 166.1 18.0 238 183-472 398-677 (733)
165 KOG0321 WD40 repeat-containing 99.7 5.7E-16 1.2E-20 165.2 19.6 241 188-473 52-345 (720)
166 KOG0642 Cell-cycle nuclear pro 99.7 2.3E-16 5E-21 166.4 16.2 199 227-474 295-560 (577)
167 KOG1007 WD repeat protein TSSC 99.7 1.3E-15 2.8E-20 150.7 20.4 266 106-398 38-360 (370)
168 PRK04922 tolB translocation pr 99.7 2.5E-14 5.3E-19 151.1 30.9 206 207-466 183-399 (433)
169 PRK04922 tolB translocation pr 99.7 1.5E-14 3.2E-19 152.8 28.8 274 109-411 120-422 (433)
170 KOG1538 Uncharacterized conser 99.7 3.3E-15 7.1E-20 159.8 22.2 267 131-473 14-291 (1081)
171 KOG1273 WD40 repeat protein [G 99.7 6.1E-15 1.3E-19 147.3 22.1 273 92-400 27-323 (405)
172 KOG1034 Transcriptional repres 99.7 3.4E-15 7.4E-20 149.7 20.0 287 70-399 35-383 (385)
173 KOG1007 WD repeat protein TSSC 99.7 2.3E-15 5E-20 149.0 17.7 261 66-341 41-360 (370)
174 PRK03629 tolB translocation pr 99.7 2.6E-14 5.7E-19 151.1 26.7 227 161-412 179-418 (429)
175 KOG0644 Uncharacterized conser 99.7 3.5E-16 7.6E-21 170.4 11.8 276 84-406 186-475 (1113)
176 KOG0302 Ribosome Assembly prot 99.7 3.7E-15 8.1E-20 151.5 18.1 200 87-302 150-379 (440)
177 KOG1009 Chromatin assembly com 99.6 2.1E-14 4.5E-19 147.1 22.7 276 129-469 13-366 (434)
178 KOG2110 Uncharacterized conser 99.6 8.8E-14 1.9E-18 141.2 26.2 227 190-473 10-246 (391)
179 KOG0303 Actin-binding protein 99.6 1.5E-15 3.3E-20 154.9 13.3 159 265-473 76-247 (472)
180 KOG0307 Vesicle coat complex C 99.6 1.9E-15 4E-20 169.4 14.3 241 90-343 66-328 (1049)
181 KOG4227 WD40 repeat protein [G 99.6 7.7E-14 1.7E-18 142.5 23.8 287 123-473 51-385 (609)
182 PRK05137 tolB translocation pr 99.6 1.6E-13 3.5E-18 144.8 27.3 207 207-465 181-396 (435)
183 KOG0307 Vesicle coat complex C 99.6 2.3E-15 5E-20 168.8 13.8 274 98-401 29-329 (1049)
184 KOG1538 Uncharacterized conser 99.6 3.2E-14 7E-19 152.3 21.4 269 90-399 14-293 (1081)
185 KOG1188 WD40 repeat protein [G 99.6 2.6E-14 5.6E-19 144.0 18.8 282 98-474 40-345 (376)
186 KOG0644 Uncharacterized conser 99.6 1.1E-15 2.3E-20 166.7 9.2 228 184-471 189-464 (1113)
187 PRK05137 tolB translocation pr 99.6 5E-13 1.1E-17 141.1 27.9 222 109-350 183-420 (435)
188 PRK02889 tolB translocation pr 99.6 1.9E-13 4.1E-18 144.3 24.0 205 208-467 176-392 (427)
189 KOG0642 Cell-cycle nuclear pro 99.6 1.4E-14 3E-19 153.1 15.1 257 123-411 289-573 (577)
190 PF08662 eIF2A: Eukaryotic tra 99.6 1.1E-13 2.5E-18 131.7 19.8 111 312-473 58-177 (194)
191 PRK02889 tolB translocation pr 99.6 3.3E-13 7.2E-18 142.5 24.8 239 96-411 162-414 (427)
192 TIGR02800 propeller_TolB tol-p 99.5 3E-12 6.5E-17 132.7 27.7 204 188-410 192-407 (417)
193 PF08662 eIF2A: Eukaryotic tra 99.5 1.3E-12 2.8E-17 124.4 21.6 168 133-350 9-187 (194)
194 PF02239 Cytochrom_D1: Cytochr 99.5 2E-11 4.4E-16 127.2 31.5 306 101-473 9-345 (369)
195 KOG1009 Chromatin assembly com 99.5 1.1E-13 2.4E-18 141.7 13.5 150 271-470 14-190 (434)
196 KOG0771 Prolactin regulatory e 99.5 2.1E-13 4.5E-18 140.2 15.1 186 230-471 148-350 (398)
197 KOG1334 WD40 repeat protein [G 99.5 9.5E-14 2.1E-18 144.9 12.6 331 32-473 101-464 (559)
198 PRK00178 tolB translocation pr 99.5 1E-11 2.3E-16 130.3 28.2 235 109-368 180-427 (430)
199 TIGR02800 propeller_TolB tol-p 99.5 6.9E-12 1.5E-16 130.0 26.4 209 207-468 169-387 (417)
200 KOG2315 Predicted translation 99.5 4.8E-11 1E-15 126.6 32.2 315 91-473 37-388 (566)
201 KOG1963 WD40 repeat protein [G 99.5 1.5E-11 3.3E-16 135.4 29.3 324 94-473 166-536 (792)
202 PRK04792 tolB translocation pr 99.5 1.8E-11 3.9E-16 130.4 27.3 235 109-368 199-446 (448)
203 KOG0649 WD40 repeat protein [G 99.5 3.6E-11 7.9E-16 117.2 26.8 193 185-410 62-284 (325)
204 COG5354 Uncharacterized protei 99.5 1.9E-11 4.1E-16 128.5 26.7 325 89-474 33-394 (561)
205 KOG1445 Tumor-specific antigen 99.5 8.4E-13 1.8E-17 141.1 15.1 223 204-473 599-842 (1012)
206 PLN02919 haloacid dehalogenase 99.5 6.6E-11 1.4E-15 137.9 32.0 247 185-474 567-887 (1057)
207 KOG1272 WD40-repeat-containing 99.5 2.2E-13 4.7E-18 141.6 10.1 197 188-409 132-333 (545)
208 KOG0771 Prolactin regulatory e 99.5 1.3E-12 2.7E-17 134.5 15.3 191 133-342 148-354 (398)
209 KOG1587 Cytoplasmic dynein int 99.4 3.6E-11 7.7E-16 130.9 26.3 255 162-473 223-514 (555)
210 PRK00178 tolB translocation pr 99.4 4.7E-11 1E-15 125.4 26.5 205 187-411 200-417 (430)
211 KOG1240 Protein kinase contain 99.4 2.7E-11 5.8E-16 137.1 25.6 259 187-474 1050-1333(1431)
212 KOG1517 Guanine nucleotide bin 99.4 2.9E-11 6.3E-16 135.2 25.1 275 98-400 1076-1382(1387)
213 TIGR03300 assembly_YfgL outer 99.4 8E-10 1.7E-14 113.9 34.0 270 95-411 62-350 (377)
214 PRK04792 tolB translocation pr 99.4 3.1E-11 6.7E-16 128.6 23.7 203 188-411 220-436 (448)
215 KOG0974 WD-repeat protein WDR6 99.4 7.6E-12 1.6E-16 139.8 18.7 265 98-400 17-289 (967)
216 KOG2110 Uncharacterized conser 99.4 1.5E-10 3.4E-15 117.9 26.5 183 200-401 58-250 (391)
217 PRK01029 tolB translocation pr 99.4 9.3E-11 2E-15 124.4 26.0 215 209-473 166-401 (428)
218 PLN02919 haloacid dehalogenase 99.4 3.6E-10 7.9E-15 131.8 32.4 243 133-403 571-892 (1057)
219 KOG1240 Protein kinase contain 99.4 4.6E-11 9.9E-16 135.3 23.4 241 86-342 1046-1334(1431)
220 KOG1524 WD40 repeat-containing 99.4 2.8E-11 6.2E-16 127.7 19.1 253 86-378 12-276 (737)
221 KOG1963 WD40 repeat protein [G 99.4 3.8E-10 8.2E-15 124.6 28.2 269 130-471 17-318 (792)
222 KOG0649 WD40 repeat protein [G 99.4 1.7E-10 3.6E-15 112.7 22.4 198 191-408 16-244 (325)
223 KOG4227 WD40 repeat protein [G 99.4 6.5E-11 1.4E-15 121.3 20.1 243 183-474 54-321 (609)
224 KOG1445 Tumor-specific antigen 99.3 3.8E-11 8.3E-16 128.6 18.2 196 188-402 82-296 (1012)
225 PF02239 Cytochrom_D1: Cytochr 99.3 1.2E-09 2.6E-14 114.0 29.2 284 98-409 48-357 (369)
226 PRK01029 tolB translocation pr 99.3 3.9E-10 8.4E-15 119.7 25.2 202 190-407 189-411 (428)
227 KOG1524 WD40 repeat-containing 99.3 2E-11 4.4E-16 128.8 14.4 244 190-469 19-280 (737)
228 KOG1587 Cytoplasmic dynein int 99.3 1.4E-10 3E-15 126.3 20.8 243 87-342 241-516 (555)
229 KOG0974 WD-repeat protein WDR6 99.3 5.1E-11 1.1E-15 133.3 17.7 190 227-473 88-286 (967)
230 PF10282 Lactonase: Lactonase, 99.3 1.8E-08 3.8E-13 103.7 35.3 275 101-406 2-331 (345)
231 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.5E-08 3.1E-13 105.3 34.2 270 108-409 27-340 (352)
232 KOG2314 Translation initiation 99.3 1E-09 2.2E-14 116.6 25.8 311 94-466 216-558 (698)
233 KOG0290 Conserved WD40 repeat- 99.3 2.2E-10 4.7E-15 114.1 19.5 257 98-377 59-355 (364)
234 KOG2111 Uncharacterized conser 99.3 9.6E-10 2.1E-14 110.5 23.8 228 190-473 10-254 (346)
235 KOG1188 WD40 repeat protein [G 99.3 5.2E-11 1.1E-15 120.4 14.4 255 64-341 61-345 (376)
236 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.5E-08 3.3E-13 105.1 32.6 259 161-473 27-328 (352)
237 PF10282 Lactonase: Lactonase, 99.3 7E-08 1.5E-12 99.3 37.4 241 185-473 36-320 (345)
238 KOG2394 WD40 protein DMR-N9 [G 99.2 8.5E-11 1.8E-15 124.3 13.8 126 271-412 220-375 (636)
239 KOG2111 Uncharacterized conser 99.2 5.3E-09 1.1E-13 105.2 25.8 174 208-400 75-257 (346)
240 KOG1272 WD40-repeat-containing 99.2 2.7E-11 5.8E-16 126.3 9.8 226 132-397 132-360 (545)
241 KOG2321 WD40 repeat protein [G 99.2 1.2E-09 2.7E-14 116.3 22.3 271 128-471 50-339 (703)
242 KOG1354 Serine/threonine prote 99.2 3.7E-10 7.9E-15 114.5 15.9 252 188-473 28-357 (433)
243 KOG4547 WD40 repeat-containing 99.2 1E-09 2.2E-14 117.2 19.8 174 195-378 2-209 (541)
244 KOG0290 Conserved WD40 repeat- 99.2 2E-09 4.2E-14 107.4 20.3 160 268-474 148-317 (364)
245 KOG2139 WD40 repeat protein [G 99.2 2E-09 4.3E-14 109.9 19.1 174 190-378 103-300 (445)
246 KOG1310 WD40 repeat protein [G 99.1 4.8E-10 1E-14 118.9 14.3 205 184-405 49-309 (758)
247 KOG4547 WD40 repeat-containing 99.1 5.2E-09 1.1E-13 111.8 21.2 181 237-472 5-217 (541)
248 KOG1334 WD40 repeat protein [G 99.1 1.4E-09 3E-14 114.2 14.7 243 184-473 141-422 (559)
249 KOG4497 Uncharacterized conser 99.1 3.8E-09 8.2E-14 106.8 17.2 223 136-404 15-245 (447)
250 KOG3881 Uncharacterized conser 99.1 1.2E-08 2.5E-13 105.0 19.5 222 196-474 67-319 (412)
251 KOG3881 Uncharacterized conser 99.0 2.8E-08 6.1E-13 102.2 21.5 244 130-407 56-328 (412)
252 KOG4497 Uncharacterized conser 99.0 8.3E-09 1.8E-13 104.4 15.3 301 98-472 20-388 (447)
253 KOG1310 WD40 repeat protein [G 99.0 7.3E-09 1.6E-13 110.1 15.5 161 225-398 49-230 (758)
254 KOG1354 Serine/threonine prote 99.0 1.4E-08 3E-13 103.3 16.3 224 62-306 61-364 (433)
255 PRK04043 tolB translocation pr 99.0 3.1E-07 6.8E-12 97.5 27.4 167 227-409 188-366 (419)
256 PF08450 SGL: SMP-30/Gluconola 99.0 6.7E-06 1.5E-10 80.0 34.5 217 188-464 2-244 (246)
257 KOG2321 WD40 repeat protein [G 99.0 3.9E-08 8.5E-13 105.1 19.9 279 57-378 36-333 (703)
258 KOG0322 G-protein beta subunit 99.0 2.8E-09 6E-14 105.1 9.6 135 247-398 172-322 (323)
259 TIGR03300 assembly_YfgL outer 98.9 8.3E-07 1.8E-11 91.5 27.8 230 94-354 101-351 (377)
260 KOG1523 Actin-related protein 98.9 3.3E-08 7.1E-13 99.7 16.3 212 226-471 10-232 (361)
261 PF13360 PQQ_2: PQQ-like domai 98.9 7.2E-07 1.6E-11 84.9 24.5 209 162-406 4-237 (238)
262 PRK04043 tolB translocation pr 98.9 8.2E-07 1.8E-11 94.3 26.4 199 189-409 191-409 (419)
263 KOG2394 WD40 protein DMR-N9 [G 98.9 3.8E-08 8.3E-13 104.5 14.8 102 250-368 281-384 (636)
264 PF13360 PQQ_2: PQQ-like domai 98.8 3.5E-06 7.5E-11 80.2 26.7 210 207-473 2-228 (238)
265 PF00400 WD40: WD domain, G-be 98.8 6E-09 1.3E-13 72.9 5.6 39 401-473 1-39 (39)
266 KOG3914 WD repeat protein WDR4 98.8 3.6E-08 7.9E-13 101.6 13.3 174 202-410 55-234 (390)
267 PRK11138 outer membrane biogen 98.8 1.9E-05 4.1E-10 82.5 33.5 272 95-409 66-363 (394)
268 KOG1523 Actin-related protein 98.8 6.4E-07 1.4E-11 90.6 19.2 192 187-399 12-236 (361)
269 COG5354 Uncharacterized protei 98.7 4.5E-06 9.8E-11 88.7 25.4 283 87-403 70-398 (561)
270 PF07433 DUF1513: Protein of u 98.7 3.4E-06 7.3E-11 85.9 23.6 225 132-407 7-255 (305)
271 COG5170 CDC55 Serine/threonine 98.7 1.1E-07 2.3E-12 96.0 12.5 245 187-469 28-361 (460)
272 KOG1064 RAVE (regulator of V-A 98.7 4.2E-08 9.1E-13 115.0 10.0 179 196-409 2218-2408(2439)
273 KOG0309 Conserved WD40 repeat- 98.7 9.1E-08 2E-12 104.7 11.5 300 68-399 6-339 (1081)
274 KOG2139 WD40 repeat protein [G 98.7 2.3E-07 5.1E-12 95.0 13.7 156 252-473 93-266 (445)
275 KOG1064 RAVE (regulator of V-A 98.7 9.3E-08 2E-12 112.2 12.0 210 196-474 2178-2397(2439)
276 KOG1409 Uncharacterized conser 98.7 2.8E-06 6E-11 86.8 19.9 244 65-345 16-273 (404)
277 KOG2695 WD40 repeat protein [G 98.6 1.1E-07 2.4E-12 96.9 9.6 171 221-410 206-387 (425)
278 PF00400 WD40: WD domain, G-be 98.6 7.1E-08 1.5E-12 67.4 5.8 39 343-397 1-39 (39)
279 KOG0309 Conserved WD40 repeat- 98.6 2.9E-07 6.3E-12 100.8 12.5 292 129-474 24-338 (1081)
280 PF15492 Nbas_N: Neuroblastoma 98.6 2E-05 4.4E-10 78.9 24.6 189 190-411 48-271 (282)
281 COG4946 Uncharacterized protei 98.6 2.1E-05 4.6E-10 83.2 24.1 269 80-375 217-505 (668)
282 KOG3914 WD repeat protein WDR4 98.6 7.8E-07 1.7E-11 91.9 13.1 156 190-351 67-233 (390)
283 KOG0280 Uncharacterized conser 98.5 6.3E-06 1.4E-10 82.8 18.4 131 230-369 125-264 (339)
284 PF08450 SGL: SMP-30/Gluconola 98.5 0.0004 8.6E-09 67.5 30.5 199 161-376 22-243 (246)
285 PF04762 IKI3: IKI3 family; I 98.5 0.00026 5.6E-09 82.4 33.6 268 93-399 214-519 (928)
286 KOG4190 Uncharacterized conser 98.5 1.8E-07 4E-12 99.7 7.1 173 222-411 731-918 (1034)
287 KOG2315 Predicted translation 98.5 1.6E-05 3.5E-10 85.2 21.6 280 90-406 75-396 (566)
288 COG2706 3-carboxymuconate cycl 98.4 0.0006 1.3E-08 70.2 30.5 257 161-472 16-318 (346)
289 KOG4190 Uncharacterized conser 98.4 1E-06 2.3E-11 94.0 10.9 214 120-350 727-957 (1034)
290 COG2706 3-carboxymuconate cycl 98.4 0.00012 2.7E-09 75.2 25.0 219 207-465 15-263 (346)
291 COG4946 Uncharacterized protei 98.4 3.8E-05 8.3E-10 81.3 21.6 190 196-406 276-484 (668)
292 PRK02888 nitrous-oxide reducta 98.4 5.8E-05 1.3E-09 83.3 23.7 178 191-400 198-405 (635)
293 PF15492 Nbas_N: Neuroblastoma 98.4 6.5E-05 1.4E-09 75.3 21.9 190 270-474 43-258 (282)
294 PRK11138 outer membrane biogen 98.4 0.00027 5.8E-09 73.9 27.3 226 94-351 116-363 (394)
295 KOG2314 Translation initiation 98.4 4.5E-05 9.8E-10 82.0 21.3 179 190-377 215-412 (698)
296 PF04762 IKI3: IKI3 family; I 98.3 0.00058 1.2E-08 79.5 30.8 338 87-473 74-454 (928)
297 PF14583 Pectate_lyase22: Olig 98.3 0.0012 2.7E-08 69.3 28.7 312 114-472 16-378 (386)
298 KOG1409 Uncharacterized conser 98.3 2.2E-05 4.8E-10 80.3 15.2 246 120-474 16-269 (404)
299 KOG0882 Cyclophilin-related pe 98.3 1.5E-05 3.2E-10 83.9 14.1 265 82-409 3-315 (558)
300 COG5170 CDC55 Serine/threonine 98.2 2.3E-05 5.1E-10 79.4 13.7 265 88-378 26-357 (460)
301 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.0013 2.9E-08 67.9 25.3 253 106-378 21-347 (353)
302 KOG0280 Uncharacterized conser 98.1 0.00012 2.7E-09 73.7 16.4 226 100-341 87-332 (339)
303 KOG4532 WD40-like repeat conta 98.1 0.00044 9.5E-09 69.2 20.1 228 197-468 83-325 (344)
304 KOG1832 HIV-1 Vpr-binding prot 98.0 2.2E-06 4.7E-11 95.7 2.6 247 29-327 1056-1315(1516)
305 KOG1832 HIV-1 Vpr-binding prot 98.0 3.1E-06 6.7E-11 94.5 3.3 186 190-409 1106-1301(1516)
306 COG3391 Uncharacterized conser 98.0 0.028 6.1E-07 59.1 32.5 270 110-411 13-295 (381)
307 KOG4532 WD40-like repeat conta 98.0 0.00068 1.5E-08 67.9 18.4 167 201-379 131-311 (344)
308 cd00216 PQQ_DH Dehydrogenases 98.0 0.012 2.6E-07 63.8 29.7 279 96-409 59-434 (488)
309 smart00320 WD40 WD40 repeats. 97.9 3.4E-05 7.4E-10 49.6 6.0 27 447-473 14-40 (40)
310 PF02897 Peptidase_S9_N: Proly 97.9 0.039 8.4E-07 57.8 31.3 247 131-404 125-409 (414)
311 PF07433 DUF1513: Protein of u 97.8 0.0034 7.4E-08 64.2 21.3 203 231-473 9-245 (305)
312 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.021 4.6E-07 59.1 26.6 224 138-375 1-297 (353)
313 PRK02888 nitrous-oxide reducta 97.8 0.0039 8.5E-08 69.2 21.8 202 187-411 236-485 (635)
314 COG3391 Uncharacterized conser 97.8 0.038 8.1E-07 58.1 28.4 230 187-470 32-278 (381)
315 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.061 1.3E-06 59.2 30.9 279 97-411 68-502 (527)
316 PF06433 Me-amine-dh_H: Methyl 97.7 0.048 1.1E-06 56.7 28.0 279 108-411 17-332 (342)
317 KOG4714 Nucleoporin [Nuclear s 97.7 0.0012 2.6E-08 65.9 15.0 149 293-474 159-317 (319)
318 KOG2695 WD40 repeat protein [G 97.7 0.00014 3.1E-09 74.6 8.8 148 202-353 228-388 (425)
319 COG0823 TolB Periplasmic compo 97.6 0.0024 5.3E-08 68.3 17.9 145 226-378 192-345 (425)
320 PRK10115 protease 2; Provision 97.6 0.19 4E-06 57.2 33.0 243 130-402 127-397 (686)
321 PF04053 Coatomer_WDAD: Coatom 97.6 0.0096 2.1E-07 64.1 21.6 214 187-472 34-259 (443)
322 KOG2041 WD40 repeat protein [G 97.5 0.00025 5.5E-09 78.2 8.2 141 283-474 26-185 (1189)
323 PF06433 Me-amine-dh_H: Methyl 97.4 0.099 2.2E-06 54.4 25.5 265 156-473 13-318 (342)
324 PF06977 SdiA-regulated: SdiA- 97.4 0.027 5.8E-07 56.3 20.5 191 123-332 16-240 (248)
325 smart00320 WD40 WD40 repeats. 97.4 0.00045 9.8E-09 44.2 5.1 38 303-340 2-40 (40)
326 PF14583 Pectate_lyase22: Olig 97.3 0.23 4.9E-06 52.6 26.5 258 98-378 48-370 (386)
327 PF00780 CNH: CNH domain; Int 97.3 0.22 4.8E-06 48.9 26.2 242 98-411 7-267 (275)
328 KOG1912 WD40 repeat protein [G 97.3 0.019 4.1E-07 64.5 18.8 356 98-474 79-550 (1062)
329 COG3386 Gluconolactonase [Carb 97.3 0.16 3.6E-06 52.2 24.8 188 200-410 39-253 (307)
330 COG0823 TolB Periplasmic compo 97.2 0.018 3.9E-07 61.7 18.3 178 190-378 197-389 (425)
331 KOG1275 PAB-dependent poly(A) 97.2 0.0038 8.1E-08 70.9 13.5 176 283-473 147-340 (1118)
332 PF04841 Vps16_N: Vps16, N-ter 97.2 0.038 8.3E-07 58.8 20.7 51 251-305 62-112 (410)
333 cd00216 PQQ_DH Dehydrogenases 97.2 0.14 3E-06 55.6 25.4 226 98-332 156-456 (488)
334 KOG0882 Cyclophilin-related pe 97.2 0.0016 3.5E-08 68.9 9.8 200 197-411 19-243 (558)
335 PF11768 DUF3312: Protein of u 97.1 0.0016 3.4E-08 70.9 8.9 67 361-474 262-328 (545)
336 KOG4714 Nucleoporin [Nuclear s 97.0 0.013 2.8E-07 58.7 13.0 100 200-302 152-255 (319)
337 KOG4649 PQQ (pyrrolo-quinoline 97.0 0.51 1.1E-05 47.8 26.9 109 98-225 23-132 (354)
338 KOG2066 Vacuolar assembly/sort 97.0 0.023 5E-07 64.0 16.0 139 97-259 82-234 (846)
339 KOG1912 WD40 repeat protein [G 96.9 0.08 1.7E-06 59.7 19.8 233 190-473 20-302 (1062)
340 KOG2041 WD40 repeat protein [G 96.9 0.1 2.2E-06 58.4 19.9 256 98-376 26-326 (1189)
341 PF11768 DUF3312: Protein of u 96.9 0.025 5.4E-07 61.8 15.2 71 269-342 258-329 (545)
342 KOG1008 Uncharacterized conser 96.9 0.00035 7.6E-09 76.5 1.0 159 268-474 100-274 (783)
343 PF02897 Peptidase_S9_N: Proly 96.8 0.46 9.9E-06 49.8 24.2 204 190-409 128-367 (414)
344 TIGR03118 PEPCTERM_chp_1 conse 96.8 0.72 1.6E-05 47.6 24.0 212 184-412 21-292 (336)
345 PF07995 GSDH: Glucose / Sorbo 96.8 0.81 1.8E-05 47.3 25.2 99 186-289 2-130 (331)
346 PF06977 SdiA-regulated: SdiA- 96.7 0.7 1.5E-05 46.2 23.1 183 188-376 24-239 (248)
347 KOG1920 IkappaB kinase complex 96.6 0.8 1.7E-05 54.2 25.3 203 89-304 69-325 (1265)
348 KOG1008 Uncharacterized conser 96.6 0.0004 8.7E-09 76.0 -0.9 192 98-302 70-276 (783)
349 PF04841 Vps16_N: Vps16, N-ter 96.6 0.63 1.4E-05 49.6 23.2 49 209-262 62-112 (410)
350 PRK10115 protease 2; Provision 96.6 1.6 3.5E-05 49.7 27.5 199 190-408 131-354 (686)
351 PF03178 CPSF_A: CPSF A subuni 96.5 0.77 1.7E-05 46.6 22.2 130 250-399 62-202 (321)
352 KOG1920 IkappaB kinase complex 96.4 0.23 5E-06 58.4 19.2 113 317-473 199-320 (1265)
353 PF03178 CPSF_A: CPSF A subuni 96.2 0.54 1.2E-05 47.7 19.1 172 251-473 3-200 (321)
354 PF04053 Coatomer_WDAD: Coatom 96.1 0.22 4.8E-06 53.8 16.6 134 273-472 35-170 (443)
355 KOG4640 Anaphase-promoting com 96.0 0.031 6.8E-07 61.5 9.7 77 316-407 23-100 (665)
356 PRK13616 lipoprotein LpqB; Pro 96.0 0.55 1.2E-05 52.6 19.4 188 130-337 350-563 (591)
357 KOG2444 WD40 repeat protein [G 96.0 0.011 2.5E-07 58.0 5.4 137 285-474 32-176 (238)
358 COG3386 Gluconolactonase [Carb 96.0 1.7 3.6E-05 44.9 21.5 202 161-377 47-274 (307)
359 PF05096 Glu_cyclase_2: Glutam 95.9 2.2 4.8E-05 43.1 25.3 174 218-409 33-213 (264)
360 KOG1645 RING-finger-containing 95.8 0.019 4.1E-07 60.4 6.3 76 348-474 188-265 (463)
361 KOG1275 PAB-dependent poly(A) 95.7 0.069 1.5E-06 61.1 10.9 144 196-341 185-341 (1118)
362 PF14783 BBS2_Mid: Ciliary BBS 95.6 0.6 1.3E-05 41.3 14.2 69 273-345 2-74 (111)
363 KOG4649 PQQ (pyrrolo-quinoline 95.6 3.1 6.7E-05 42.3 22.1 258 98-401 63-353 (354)
364 PF08553 VID27: VID27 cytoplas 95.5 0.4 8.8E-06 55.2 16.4 133 248-398 502-646 (794)
365 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.5 5 0.00011 44.3 25.1 193 197-405 69-339 (527)
366 PF05096 Glu_cyclase_2: Glutam 95.4 3.6 7.9E-05 41.6 24.3 189 120-332 35-250 (264)
367 KOG3617 WD40 and TPR repeat-co 95.3 0.66 1.4E-05 53.2 16.6 186 137-351 23-229 (1416)
368 TIGR02604 Piru_Ver_Nterm putat 95.2 1.1 2.4E-05 46.7 17.4 80 294-377 48-142 (367)
369 PF14783 BBS2_Mid: Ciliary BBS 95.1 1.2 2.7E-05 39.3 14.6 100 228-338 1-110 (111)
370 PF07995 GSDH: Glucose / Sorbo 95.1 0.52 1.1E-05 48.7 14.4 63 315-378 3-72 (331)
371 KOG1916 Nuclear protein, conta 95.0 0.0088 1.9E-07 68.0 1.2 101 289-404 201-328 (1283)
372 COG3490 Uncharacterized protei 95.0 3.8 8.2E-05 42.2 19.6 164 191-375 40-242 (366)
373 COG3204 Uncharacterized protei 94.9 2 4.4E-05 44.1 17.4 161 125-306 82-267 (316)
374 KOG2066 Vacuolar assembly/sort 94.9 0.66 1.4E-05 52.7 15.1 151 228-411 41-199 (846)
375 PF08553 VID27: VID27 cytoplas 94.8 0.53 1.1E-05 54.2 14.5 127 290-464 501-637 (794)
376 KOG1645 RING-finger-containing 94.7 0.068 1.5E-06 56.3 6.5 99 252-351 175-277 (463)
377 TIGR03606 non_repeat_PQQ dehyd 94.3 1.7 3.7E-05 47.2 16.4 54 184-238 28-90 (454)
378 PRK13616 lipoprotein LpqB; Pro 94.3 3 6.4E-05 46.8 18.8 179 186-375 350-556 (591)
379 KOG2114 Vacuolar assembly/sort 94.2 7.2 0.00016 45.1 21.1 198 192-411 30-256 (933)
380 KOG3621 WD40 repeat-containing 93.7 0.38 8.2E-06 53.9 10.1 110 315-471 35-150 (726)
381 KOG3617 WD40 and TPR repeat-co 93.7 0.12 2.6E-06 58.9 6.2 102 321-473 23-129 (1416)
382 KOG2079 Vacuolar assembly/sort 93.6 0.32 6.8E-06 56.8 9.5 71 328-412 102-173 (1206)
383 TIGR02604 Piru_Ver_Nterm putat 93.5 3.1 6.8E-05 43.4 16.2 118 251-377 48-202 (367)
384 KOG2079 Vacuolar assembly/sort 93.4 0.32 6.9E-06 56.8 9.0 93 284-378 100-195 (1206)
385 COG3823 Glutamine cyclotransfe 93.4 4.7 0.0001 39.8 15.7 32 191-224 51-84 (262)
386 TIGR03074 PQQ_membr_DH membran 93.3 20 0.00042 41.7 26.2 207 237-473 194-475 (764)
387 TIGR03606 non_repeat_PQQ dehyd 93.3 3 6.5E-05 45.4 15.9 73 306-378 22-105 (454)
388 KOG2114 Vacuolar assembly/sort 93.1 5.6 0.00012 45.9 18.1 140 249-411 44-214 (933)
389 PLN00033 photosystem II stabil 92.8 8.7 0.00019 41.1 18.3 144 281-470 248-394 (398)
390 PLN00033 photosystem II stabil 92.4 9.2 0.0002 40.9 17.9 139 191-339 244-396 (398)
391 PF13449 Phytase-like: Esteras 91.1 20 0.00044 36.9 18.5 64 315-378 86-166 (326)
392 KOG2444 WD40 repeat protein [G 91.1 0.65 1.4E-05 45.9 6.9 104 283-399 70-177 (238)
393 PF10647 Gmad1: Lipoprotein Lp 90.9 18 0.00039 35.9 22.6 170 118-304 9-200 (253)
394 PF08596 Lgl_C: Lethal giant l 90.7 26 0.00057 37.4 20.5 168 270-473 86-288 (395)
395 PF14870 PSII_BNR: Photosynthe 90.3 24 0.00053 36.4 23.8 111 313-468 144-255 (302)
396 KOG2395 Protein involved in va 90.0 3.4 7.3E-05 45.5 11.7 127 289-464 352-490 (644)
397 PF05935 Arylsulfotrans: Aryls 89.8 22 0.00048 38.7 18.1 151 197-357 114-317 (477)
398 KOG4640 Anaphase-promoting com 89.8 1.1 2.4E-05 49.8 8.0 69 359-473 21-90 (665)
399 KOG3621 WD40 repeat-containing 89.6 1.6 3.5E-05 49.1 9.2 119 87-217 34-155 (726)
400 PF12894 Apc4_WD40: Anaphase-p 88.3 1.1 2.3E-05 33.5 4.7 33 314-346 12-45 (47)
401 PF11715 Nup160: Nucleoporin N 88.3 0.91 2E-05 49.7 6.3 39 361-410 217-259 (547)
402 PF07569 Hira: TUP1-like enhan 88.3 3.9 8.5E-05 40.0 10.0 71 276-346 15-99 (219)
403 COG3490 Uncharacterized protei 88.2 14 0.0003 38.3 13.8 141 271-465 35-181 (366)
404 PRK13684 Ycf48-like protein; P 88.2 35 0.00075 35.3 24.7 147 187-341 174-330 (334)
405 KOG2395 Protein involved in va 88.2 7.9 0.00017 42.8 12.9 131 249-398 355-499 (644)
406 PRK13684 Ycf48-like protein; P 87.6 37 0.00081 35.1 29.7 153 271-472 173-328 (334)
407 PF00780 CNH: CNH domain; Int 87.5 30 0.00065 33.8 24.3 143 197-347 6-171 (275)
408 KOG1916 Nuclear protein, conta 87.4 0.1 2.2E-06 59.8 -1.8 146 192-344 242-425 (1283)
409 PF12894 Apc4_WD40: Anaphase-p 87.4 1.2 2.6E-05 33.3 4.5 27 447-473 13-39 (47)
410 PF15390 DUF4613: Domain of un 86.6 9.8 0.00021 42.6 12.7 149 215-377 2-174 (671)
411 TIGR03074 PQQ_membr_DH membran 86.5 72 0.0016 37.2 27.0 66 333-409 413-487 (764)
412 PF14655 RAB3GAP2_N: Rab3 GTPa 86.4 6.2 0.00013 42.5 11.0 89 308-409 302-408 (415)
413 PF07569 Hira: TUP1-like enhan 86.2 3.4 7.3E-05 40.4 8.3 68 81-148 5-85 (219)
414 PF14655 RAB3GAP2_N: Rab3 GTPa 86.2 5.9 0.00013 42.6 10.7 81 222-306 301-403 (415)
415 PF10647 Gmad1: Lipoprotein Lp 86.2 37 0.00081 33.6 20.6 141 228-378 25-185 (253)
416 PF12234 Rav1p_C: RAVE protein 85.5 25 0.00055 39.9 15.6 108 231-341 34-155 (631)
417 PF08596 Lgl_C: Lethal giant l 85.0 58 0.0013 34.8 24.0 264 90-378 3-326 (395)
418 PF07250 Glyoxal_oxid_N: Glyox 84.3 14 0.0003 37.0 11.7 78 296-378 49-137 (243)
419 PF14269 Arylsulfotran_2: Aryl 83.1 59 0.0013 33.3 21.7 62 250-312 96-184 (299)
420 PHA02713 hypothetical protein; 82.6 59 0.0013 36.2 16.9 194 197-411 303-545 (557)
421 PHA02713 hypothetical protein; 82.3 68 0.0015 35.7 17.3 202 96-313 302-545 (557)
422 PF05935 Arylsulfotrans: Aryls 81.9 84 0.0018 34.3 20.6 149 249-413 127-315 (477)
423 PF10395 Utp8: Utp8 family; I 81.5 46 0.00099 38.1 15.5 163 87-267 128-314 (670)
424 TIGR03032 conserved hypothetic 81.5 23 0.00051 36.9 12.2 106 165-280 189-314 (335)
425 KOG4499 Ca2+-binding protein R 80.9 25 0.00055 35.5 11.7 135 133-279 112-262 (310)
426 KOG4659 Uncharacterized conser 80.4 91 0.002 38.4 17.6 248 133-470 478-789 (1899)
427 PF08801 Nucleoporin_N: Nup133 80.4 21 0.00046 37.8 12.1 28 447-474 191-218 (422)
428 KOG2280 Vacuolar assembly/sort 79.8 85 0.0019 36.3 16.7 97 251-351 65-165 (829)
429 PF11715 Nup160: Nucleoporin N 79.6 8.6 0.00019 42.1 9.1 38 315-352 216-259 (547)
430 TIGR02276 beta_rpt_yvtn 40-res 79.2 7.4 0.00016 26.9 5.6 41 281-322 1-42 (42)
431 KOG4499 Ca2+-binding protein R 77.5 86 0.0019 31.8 14.3 127 118-255 139-284 (310)
432 KOG4441 Proteins containing BT 77.3 1.3E+02 0.0028 33.8 20.4 218 98-332 285-530 (571)
433 TIGR02276 beta_rpt_yvtn 40-res 77.0 11 0.00023 26.0 5.9 38 197-234 2-41 (42)
434 PHA03098 kelch-like protein; P 75.5 1.3E+02 0.0028 32.8 18.7 197 95-305 292-515 (534)
435 COG3823 Glutamine cyclotransfe 74.9 45 0.00097 33.2 11.3 163 140-331 55-247 (262)
436 PHA03098 kelch-like protein; P 74.4 1.4E+02 0.003 32.6 19.6 146 197-345 342-514 (534)
437 PF03022 MRJP: Major royal jel 73.3 1.1E+02 0.0024 31.1 17.7 159 210-377 36-254 (287)
438 PF07250 Glyoxal_oxid_N: Glyox 72.9 63 0.0014 32.4 12.3 139 253-409 49-207 (243)
439 PF07676 PD40: WD40-like Beta 72.5 15 0.00032 25.3 5.7 18 361-378 11-28 (39)
440 KOG1900 Nuclear pore complex, 72.4 24 0.00052 42.7 10.5 31 444-474 241-271 (1311)
441 PF14761 HPS3_N: Hermansky-Pud 72.1 13 0.00029 36.5 7.2 47 99-147 29-77 (215)
442 PF05694 SBP56: 56kDa selenium 71.4 1.2E+02 0.0026 33.2 14.6 190 199-400 89-343 (461)
443 KOG2247 WD40 repeat-containing 70.9 0.35 7.7E-06 52.4 -4.3 155 191-350 40-196 (615)
444 PF12234 Rav1p_C: RAVE protein 70.9 82 0.0018 35.9 13.8 83 289-376 47-146 (631)
445 COG3204 Uncharacterized protei 70.5 1.4E+02 0.003 31.1 19.6 163 188-354 88-275 (316)
446 PF07676 PD40: WD40-like Beta 70.2 14 0.0003 25.4 5.1 26 314-339 9-38 (39)
447 PF13449 Phytase-like: Esteras 69.5 1.2E+02 0.0025 31.3 13.8 78 361-465 87-166 (326)
448 PF10313 DUF2415: Uncharacteri 68.2 12 0.00027 27.6 4.5 32 272-303 2-35 (43)
449 PF08728 CRT10: CRT10; InterP 67.3 49 0.0011 38.2 11.2 103 197-300 113-245 (717)
450 PF10313 DUF2415: Uncharacteri 65.5 20 0.00043 26.5 5.2 30 188-217 3-34 (43)
451 PF14727 PHTB1_N: PTHB1 N-term 64.7 2.1E+02 0.0046 31.0 18.1 139 197-341 36-203 (418)
452 KOG1897 Damage-specific DNA bi 62.6 3.4E+02 0.0074 32.6 21.3 226 98-339 684-939 (1096)
453 PF08728 CRT10: CRT10; InterP 59.0 69 0.0015 37.0 10.5 101 283-398 114-245 (717)
454 KOG3630 Nuclear pore complex, 58.0 74 0.0016 38.5 10.6 104 276-380 161-265 (1405)
455 PF10168 Nup88: Nuclear pore c 57.8 1.6E+02 0.0035 34.1 13.3 79 131-219 86-182 (717)
456 PF01436 NHL: NHL repeat; Int 56.8 32 0.0007 22.5 4.6 27 186-213 2-28 (28)
457 TIGR03118 PEPCTERM_chp_1 conse 56.0 2.7E+02 0.0058 29.3 23.3 172 228-407 24-237 (336)
458 PF05694 SBP56: 56kDa selenium 55.3 2.1E+02 0.0045 31.4 12.8 93 250-342 222-342 (461)
459 PHA02790 Kelch-like protein; P 54.6 3.1E+02 0.0068 29.7 18.5 189 197-402 271-473 (480)
460 KOG2377 Uncharacterized conser 53.9 1.8E+02 0.004 32.1 12.0 65 190-258 27-96 (657)
461 PF12768 Rax2: Cortical protei 53.6 2.6E+02 0.0057 28.5 15.0 102 148-257 5-122 (281)
462 PF12768 Rax2: Cortical protei 52.6 2.2E+02 0.0047 29.2 12.0 83 293-376 16-108 (281)
463 COG1520 FOG: WD40-like repeat 52.6 2.8E+02 0.0061 28.6 23.5 107 196-308 67-178 (370)
464 KOG4441 Proteins containing BT 50.0 4.2E+02 0.009 29.8 21.5 179 160-344 300-501 (571)
465 COG1506 DAP2 Dipeptidyl aminop 48.9 4.4E+02 0.0095 29.7 15.2 173 188-374 15-231 (620)
466 PF01436 NHL: NHL repeat; Int 48.2 48 0.001 21.6 4.4 25 314-338 2-27 (28)
467 KOG2377 Uncharacterized conser 47.9 4.3E+02 0.0093 29.4 13.6 58 314-371 67-125 (657)
468 PF02333 Phytase: Phytase; In 47.6 3.9E+02 0.0084 28.7 24.7 192 98-302 68-291 (381)
469 PF14761 HPS3_N: Hermansky-Pud 47.1 86 0.0019 31.0 7.8 56 315-376 19-77 (215)
470 PF14870 PSII_BNR: Photosynthe 46.8 3.5E+02 0.0075 28.0 30.1 123 271-408 145-269 (302)
471 PF14269 Arylsulfotran_2: Aryl 45.9 90 0.002 32.0 8.2 39 361-410 146-184 (299)
472 TIGR02608 delta_60_rpt delta-6 44.7 78 0.0017 24.5 5.7 19 131-149 2-20 (55)
473 PF01011 PQQ: PQQ enzyme repea 43.6 36 0.00077 23.6 3.4 27 100-126 2-28 (38)
474 PF03088 Str_synth: Strictosid 43.6 1.5E+02 0.0033 25.1 7.8 76 362-472 1-85 (89)
475 smart00564 PQQ beta-propeller 43.2 62 0.0013 21.0 4.4 26 98-123 6-31 (33)
476 TIGR03032 conserved hypothetic 43.1 4.3E+02 0.0092 27.9 14.4 129 187-325 153-316 (335)
477 KOG2280 Vacuolar assembly/sort 42.9 6.2E+02 0.013 29.7 14.5 202 180-408 38-255 (829)
478 COG5167 VID27 Protein involved 39.3 4.7E+02 0.01 29.6 12.4 129 250-398 490-631 (776)
479 PF10168 Nup88: Nuclear pore c 38.9 5.8E+02 0.013 29.7 14.0 28 447-474 148-178 (717)
480 PF05787 DUF839: Bacterial pro 38.9 86 0.0019 34.9 7.2 17 447-463 503-519 (524)
481 COG4590 ABC-type uncharacteriz 37.3 2.1E+02 0.0045 31.7 9.4 95 284-400 281-387 (733)
482 PF11635 Med16: Mediator compl 37.3 1.3E+02 0.0028 35.0 8.5 67 55-121 226-294 (753)
483 KOG1983 Tomosyn and related SN 36.7 6.4E+02 0.014 30.5 14.3 28 188-216 38-65 (993)
484 PF02333 Phytase: Phytase; In 35.0 6E+02 0.013 27.3 23.5 118 250-376 78-225 (381)
485 PF01731 Arylesterase: Arylest 35.0 1.9E+02 0.0041 24.3 7.1 50 334-400 36-85 (86)
486 PF15390 DUF4613: Domain of un 33.9 7.2E+02 0.016 28.5 13.0 153 265-473 14-184 (671)
487 PF12657 TFIIIC_delta: Transcr 33.7 2.7E+02 0.0059 25.8 8.7 27 447-473 87-119 (173)
488 PF03022 MRJP: Major royal jel 33.3 5.3E+02 0.011 26.1 21.9 63 251-313 35-108 (287)
489 TIGR02608 delta_60_rpt delta-6 32.9 53 0.0012 25.4 3.1 19 447-465 2-20 (55)
490 PF13570 PQQ_3: PQQ-like domai 32.6 68 0.0015 22.2 3.5 23 95-117 18-40 (40)
491 PF07202 Tcp10_C: T-complex pr 31.8 4.7E+02 0.01 25.1 22.2 14 390-404 162-175 (179)
492 smart00108 B_lectin Bulb-type 30.6 3.3E+02 0.0071 23.2 8.2 27 314-341 85-111 (114)
493 COG5167 VID27 Protein involved 29.2 1.2E+02 0.0027 33.9 6.2 60 283-342 573-632 (776)
494 PF01453 B_lectin: D-mannose b 29.1 3.8E+02 0.0082 23.2 8.3 53 287-341 23-78 (114)
495 COG2133 Glucose/sorbosone dehy 28.4 5.6E+02 0.012 27.7 10.9 18 361-378 179-196 (399)
496 PF10411 DsbC_N: Disulfide bon 27.8 62 0.0013 24.9 2.7 14 363-376 35-48 (57)
497 PF12657 TFIIIC_delta: Transcr 27.7 3.4E+02 0.0074 25.1 8.3 30 314-343 86-122 (173)
498 COG1520 FOG: WD40-like repeat 27.4 7E+02 0.015 25.7 22.7 191 97-308 67-275 (370)
499 PHA02790 Kelch-like protein; P 26.9 8.4E+02 0.018 26.4 17.4 138 197-342 318-470 (480)
500 cd00028 B_lectin Bulb-type man 26.7 2.2E+02 0.0047 24.5 6.3 26 315-341 87-112 (116)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.1e-53 Score=424.21 Aligned_cols=321 Identities=13% Similarity=0.198 Sum_probs=291.3
Q ss_pred cccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEE
Q 011970 86 MKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (474)
Q Consensus 86 ~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~ 163 (474)
-|..+|.++.|+ +..||+||-|.|+|+||..|-..+.|..| |.++|-+|++||||+.|||++ .| .+|
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~Kg-H~~WVlcvawsPDgk~iASG~----~d------g~I 181 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKG-HKNWVLCVAWSPDGKKIASGS----KD------GSI 181 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecC-CccEEEEEEECCCcchhhccc----cC------CeE
Confidence 388889999999 89999999999999999999999999997 889999999999999999965 55 699
Q ss_pred EEeEeccCCCCCccceeeeccccCceEEEEeC----CCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCC
Q 011970 164 KIEYIRRGKPDSGFALFESESLKWPGFVEFDD----VNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPG 237 (474)
Q Consensus 164 ~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~----~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg 237 (474)
+|||.++|++... +|- +|.+||.+++|-| |..++|||+|-|++|+|||++.|+|++++.+ ..|.+|.+-.+
T Consensus 182 ~lwdpktg~~~g~-~l~--gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~ 258 (480)
T KOG0271|consen 182 RLWDPKTGQQIGR-ALR--GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE 258 (480)
T ss_pred EEecCCCCCcccc-ccc--CcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC
Confidence 9999999997542 333 3578999998864 4678999999999999999999999999975 57999999877
Q ss_pred ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEe-----------------------------------cC
Q 011970 238 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE-----------------------------------QF 282 (474)
Q Consensus 238 ~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~-----------------------------------~~ 282 (474)
+.++++ |.|+|||+|+..+|.++.+|+||.|+|+.++.+. +.
T Consensus 259 gliySg---S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~ 335 (480)
T KOG0271|consen 259 GLIYSG---SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS 335 (480)
T ss_pred ceEEec---CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence 877765 6699999999999999999999999999999871 22
Q ss_pred CCeEEEEeCCCcEEEEECCC-CceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCC
Q 011970 283 NEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 359 (474)
Q Consensus 283 ~~~ll~~~~D~tIkIWDv~t-g~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~ 359 (474)
+|.|+++++|.|+-+|+... .+++..+.||+.-|..+.||||++++||+| |..|||||.+ |+.+.+|.||-..
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~---- 411 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAA---- 411 (480)
T ss_pred cceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccce----
Confidence 45799999999999999654 558888999999999999999999999999 9999999995 9999999999987
Q ss_pred CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccc
Q 011970 360 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS 439 (474)
Q Consensus 360 ~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (474)
|..|++|.|.++|+|||+ |.|+|+||+.|.+....|.||.+
T Consensus 412 -VYqvawsaDsRLlVS~Sk-----------DsTLKvw~V~tkKl~~DLpGh~D--------------------------- 452 (480)
T KOG0271|consen 412 -VYQVAWSADSRLLVSGSK-----------DSTLKVWDVRTKKLKQDLPGHAD--------------------------- 452 (480)
T ss_pred -eEEEEeccCccEEEEcCC-----------CceEEEEEeeeeeecccCCCCCc---------------------------
Confidence 689999999999999988 99999999999999999999996
Q ss_pred cccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 440 TVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 440 ~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|++|.+||||+.++||+.|..+|||.
T Consensus 453 -------EVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 453 -------EVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -------eEEEEEecCCCceeecCCCceEEEeec
Confidence 899999999999999999999999996
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.3e-48 Score=393.65 Aligned_cols=301 Identities=14% Similarity=0.121 Sum_probs=253.9
Q ss_pred cccccchhhhhhcccccceeecccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCC
Q 011970 49 RAFSISNAQERFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSP 128 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~ 128 (474)
++-++..+.+.+.++-|--.=-.-+.|...|.|.++ +++||++|-+|+||+|+..+.+.+++|.| |
T Consensus 151 ~~~~~~~~~k~~~~~~l~~SQ~gd~rPis~~~fS~d-------------s~~laT~swsG~~kvW~~~~~~~~~~l~g-H 216 (459)
T KOG0272|consen 151 KALSRKEALKHLQSLELVCSQVGDTRPISGCSFSRD-------------SKHLATGSWSGLVKVWSVPQCNLLQTLRG-H 216 (459)
T ss_pred hhhHHHHHHHHhhhhhhhhhhccCCCcceeeEeecC-------------CCeEEEeecCCceeEeecCCcceeEEEec-c
Confidence 344555555555555554222223344455555555 78888888888888888887777777776 4
Q ss_pred CceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCC-CCeEEEEecCC
Q 011970 129 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV-NGKVLTYSAQD 207 (474)
Q Consensus 129 ~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~-nGk~LaS~s~D 207 (474)
.+ .++.+.|+|. ++..|||||.|
T Consensus 217 ~~--------------------------------------------------------~v~~~~fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 217 TS--------------------------------------------------------RVGAAVFHPVDSDLNLATASAD 240 (459)
T ss_pred cc--------------------------------------------------------ceeeEEEccCCCccceeeeccC
Confidence 22 2235667655 47789999999
Q ss_pred CcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCC
Q 011970 208 SIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~ 284 (474)
|++|+|++.+-++|..|.+ ..|-.|+|+| |.+|+++ +.|.|-+|||++|++.+.-.+||...|++++|. |||.
T Consensus 241 gtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Ta---sfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~-~DGS 316 (459)
T KOG0272|consen 241 GTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTA---SFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ-PDGS 316 (459)
T ss_pred CceeeeccCCCcchhhhhcchhhheeeeecCCCceeeec---ccccchhhcccccchhhHhhcccccccceeEec-CCCc
Confidence 9999999998888888864 5799999998 6777665 779999999999999999999999999999997 5666
Q ss_pred eEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCee
Q 011970 285 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTN 362 (474)
Q Consensus 285 ~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~ 362 (474)
.+++|+.|..-||||+++|.|+-+|.||...|.+|+|||+|..|||++ |+|+||||++ -.++.++.+|.+- |.
T Consensus 317 L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl-----VS 391 (459)
T KOG0272|consen 317 LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL-----VS 391 (459)
T ss_pred eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch-----hh
Confidence 666688999999999999999999999999999999999999999999 9999999997 6789999999987 68
Q ss_pred EEEECC-CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccc
Q 011970 363 NIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTV 441 (474)
Q Consensus 363 svafSp-Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (474)
.|.|+| -|++|+|+|. |+|+|||.-.+++|+++|.||.+
T Consensus 392 ~Vk~~p~~g~fL~Tasy-----------D~t~kiWs~~~~~~~ksLaGHe~----------------------------- 431 (459)
T KOG0272|consen 392 QVKYSPQEGYFLVTASY-----------DNTVKIWSTRTWSPLKSLAGHEG----------------------------- 431 (459)
T ss_pred heEecccCCeEEEEccc-----------CcceeeecCCCcccchhhcCCcc-----------------------------
Confidence 899999 7999999987 99999999999999999999996
Q ss_pred cccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 442 GEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 442 ~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|.+|.++|||+.|+|+|.|.|+|||.
T Consensus 432 -----kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 432 -----KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred -----ceEEEEeccCCceEEEeccCceeeecc
Confidence 899999999999999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.2e-47 Score=381.42 Aligned_cols=285 Identities=15% Similarity=0.221 Sum_probs=252.6
Q ss_pred cceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeee-ccccCceEEEEeCC
Q 011970 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVEFDDV 196 (474)
Q Consensus 118 g~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~~ 196 (474)
.+|-..+.| |.+.|-|+.|+|+|..|+|+| .| .|+||||+.+..+ +|+. +|-.|+-+|+++ |
T Consensus 105 trCssS~~G-H~e~Vl~~~fsp~g~~l~tGs----GD------~TvR~WD~~TeTp-----~~t~KgH~~WVlcvaws-P 167 (480)
T KOG0271|consen 105 TRCSSSIAG-HGEAVLSVQFSPTGSRLVTGS----GD------TTVRLWDLDTETP-----LFTCKGHKNWVLCVAWS-P 167 (480)
T ss_pred ceeccccCC-CCCcEEEEEecCCCceEEecC----CC------ceEEeeccCCCCc-----ceeecCCccEEEEEEEC-C
Confidence 456778997 889999999999999999955 56 7999999877664 5655 478899999998 8
Q ss_pred CCeEEEEecCCCcEEEeecCCCeEE-EEEc--CCcEEEEEEcC------CceEEEEecCCCCccEEEEecCCCeEEEEEe
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYTML-YSIS--DKHVQEIKISP------GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~~l-~tl~--~~~V~~vafSp------g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~ 267 (474)
||+.||||+.||+|++||.++|+++ .+|. ..+|.+++|-| ..+||++ +.|++|+|||+.-|+|+.++.
T Consensus 168 Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~---skDg~vrIWd~~~~~~~~~ls 244 (480)
T KOG0271|consen 168 DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASS---SKDGSVRIWDTKLGTCVRTLS 244 (480)
T ss_pred CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecc---cCCCCEEEEEccCceEEEEec
Confidence 9999999999999999999999976 4665 46899999986 2445544 568999999999999999999
Q ss_pred ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEc-----------C-------------
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL-----------Y------------- 323 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fs-----------p------------- 323 (474)
+|+..|.+|.+- ..+.|.+++.|+|||+|+...|.|.+.++||..+|..++.| |
T Consensus 245 gHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 245 GHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred cCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 999999999984 13567778999999999999999999999999999999987 2
Q ss_pred ------------CCcEEEEEc-CCcEEEEeC-C-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccC
Q 011970 324 ------------ENQLFLTFR-NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 324 ------------dg~llaS~s-D~tIklWd~-~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s 388 (474)
.+..|+|+| |.|+-||+- . -++++.+.||+.- ||.|+|||||++|||+|.
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~l-----Vn~V~fSPd~r~IASaSF---------- 387 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQAL-----VNHVSFSPDGRYIASASF---------- 387 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhh-----eeeEEECCCccEEEEeec----------
Confidence 234599999 999999998 3 6799999999986 799999999999999998
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCc
Q 011970 389 SAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 468 (474)
Q Consensus 389 ~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dgt 468 (474)
|.+|||||-.|||.+++|+||-. .|+.|++|.|.+.|+|||.|.|
T Consensus 388 -DkSVkLW~g~tGk~lasfRGHv~----------------------------------~VYqvawsaDsRLlVS~SkDsT 432 (480)
T KOG0271|consen 388 -DKSVKLWDGRTGKFLASFRGHVA----------------------------------AVYQVAWSADSRLLVSGSKDST 432 (480)
T ss_pred -ccceeeeeCCCcchhhhhhhccc----------------------------------eeEEEEeccCccEEEEcCCCce
Confidence 99999999999999999999985 8999999999999999999999
Q ss_pred EEEccC
Q 011970 469 VHVWSN 474 (474)
Q Consensus 469 VklWd~ 474 (474)
+|+|+.
T Consensus 433 LKvw~V 438 (480)
T KOG0271|consen 433 LKVWDV 438 (480)
T ss_pred EEEEEe
Confidence 999984
No 4
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-41 Score=340.17 Aligned_cols=281 Identities=17% Similarity=0.250 Sum_probs=249.2
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEE
Q 011970 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 202 (474)
Q Consensus 123 ~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~La 202 (474)
-|.| |...|+.|-|.|+--..+++| +| .++++||..+|++..+ |-+ |...+..|+|+ .-|++||
T Consensus 103 ~l~g-~r~~vt~v~~hp~~~~v~~as----~d------~tikv~D~~tg~~e~~--LrG--Ht~sv~di~~~-a~Gk~l~ 166 (406)
T KOG0295|consen 103 KLAG-HRSSVTRVIFHPSEALVVSAS----ED------ATIKVFDTETGELERS--LRG--HTDSVFDISFD-ASGKYLA 166 (406)
T ss_pred hhhc-cccceeeeeeccCceEEEEec----CC------ceEEEEEccchhhhhh--hhc--cccceeEEEEe-cCccEEE
Confidence 3455 778899999999887666654 77 7999999999998554 333 34557799998 7899999
Q ss_pred EecCCCcEEEeecCC-CeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEE
Q 011970 203 YSAQDSIYKVFDLKN-YTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 278 (474)
Q Consensus 203 S~s~D~tiKlWdl~t-g~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F 278 (474)
++|.|=.+++||..+ ++|+++++ .+.|.+|+|-| |..+++. +.|.+||.|++.||.|+++|.+|..+|+-|+-
T Consensus 167 tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~---srD~tik~We~~tg~cv~t~~~h~ewvr~v~v 243 (406)
T KOG0295|consen 167 TCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSC---SRDNTIKAWECDTGYCVKTFPGHSEWVRMVRV 243 (406)
T ss_pred ecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeec---ccccceeEEecccceeEEeccCchHhEEEEEe
Confidence 999999999999986 77888876 46899999998 8888765 66899999999999999999999999999996
Q ss_pred EecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcC---------------CCcEEEEEc-CCcEEEEeCC
Q 011970 279 IEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY---------------ENQLFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 279 ~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fsp---------------dg~llaS~s-D~tIklWd~~ 342 (474)
. +||..+++++.|.+|++|=+.+++|...+++|.+.|..++|-| .||.+.++| |+|||+||+.
T Consensus 244 ~-~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~ 322 (406)
T KOG0295|consen 244 N-QDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS 322 (406)
T ss_pred c-CCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc
Confidence 5 5555555678999999999999999999999999999999854 358999999 9999999995
Q ss_pred -CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccC
Q 011970 343 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELG 421 (474)
Q Consensus 343 -G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~ 421 (474)
|.||-||.||..| |.+++|+|-|+||+|+.. |+|+|+||+.+++|+.++++|+.
T Consensus 323 tg~cL~tL~ghdnw-----Vr~~af~p~Gkyi~ScaD-----------Dktlrvwdl~~~~cmk~~~ah~h--------- 377 (406)
T KOG0295|consen 323 TGMCLFTLVGHDNW-----VRGVAFSPGGKYILSCAD-----------DKTLRVWDLKNLQCMKTLEAHEH--------- 377 (406)
T ss_pred CCeEEEEEecccce-----eeeeEEcCCCeEEEEEec-----------CCcEEEEEeccceeeeccCCCcc---------
Confidence 9999999999999 789999999999999876 99999999999999999999996
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 422 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
-|+++.|.-+-.+++||+-|.++|+|.
T Consensus 378 -------------------------fvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 378 -------------------------FVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred -------------------------eeEEEecCCCCceEEeccccceeeeee
Confidence 899999999999999999999999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.7e-39 Score=318.59 Aligned_cols=285 Identities=12% Similarity=0.157 Sum_probs=253.0
Q ss_pred eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEE
Q 011970 122 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL 201 (474)
Q Consensus 122 ~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~L 201 (474)
++|.| |.+.|.++-|++|.+.|+|+|.| ..+-|||--+..-...+||- ..||-.+||+ |.|+.+
T Consensus 49 r~LkG-H~~Ki~~~~ws~Dsr~ivSaSqD----------GklIvWDs~TtnK~haipl~----s~WVMtCA~s-PSg~~V 112 (343)
T KOG0286|consen 49 RTLKG-HLNKIYAMDWSTDSRRIVSASQD----------GKLIVWDSFTTNKVHAIPLP----SSWVMTCAYS-PSGNFV 112 (343)
T ss_pred EEecc-cccceeeeEecCCcCeEEeeccC----------CeEEEEEcccccceeEEecC----ceeEEEEEEC-CCCCeE
Confidence 68887 88999999999999999998744 46779998776654433433 4599999998 799999
Q ss_pred EEecCCCcEEEeecCCC------eEEEEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcce
Q 011970 202 TYSAQDSIYKVFDLKNY------TMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN 273 (474)
Q Consensus 202 aS~s~D~tiKlWdl~tg------~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v 273 (474)
|.|+-|...-|+++++- ..-+.+. ...+.++.|-+++.|+++ |+|.|.-|||||+|+.++.|.||.+-|
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~---SGD~TCalWDie~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTG---SGDMTCALWDIETGQQTQVFHGHTGDV 189 (343)
T ss_pred EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEec---CCCceEEEEEcccceEEEEecCCcccE
Confidence 99999999999999854 2334454 457999999998888886 679999999999999999999999999
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEecc
Q 011970 274 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED 351 (474)
Q Consensus 274 ~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~g 351 (474)
.++++.|.++..+++++-|++.+|||++.+.|.+++.||...|.+|.|-|+|.-|+|+| |+|.+++|++ .+.+..|+
T Consensus 190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys- 268 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS- 268 (343)
T ss_pred EEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec-
Confidence 99999865778888899999999999999999999999999999999999999999999 9999999997 88888888
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccc
Q 011970 352 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 431 (474)
Q Consensus 352 H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~ 431 (474)
|..- +|.|++|+||-.|++|.+|.. |.++++||...|+-+.+|.||.+
T Consensus 269 ~~~~--~~gitSv~FS~SGRlLfagy~-----------d~~c~vWDtlk~e~vg~L~GHeN------------------- 316 (343)
T KOG0286|consen 269 HDSI--ICGITSVAFSKSGRLLFAGYD-----------DFTCNVWDTLKGERVGVLAGHEN------------------- 316 (343)
T ss_pred cCcc--cCCceeEEEcccccEEEeeec-----------CCceeEeeccccceEEEeeccCC-------------------
Confidence 4332 367999999999999999876 99999999999999999999997
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 432 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 432 ~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|++|..+|||--++|||.|.++|||.
T Consensus 317 ---------------RvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 317 ---------------RVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ---------------eeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999999999999999999994
No 6
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-39 Score=312.19 Aligned_cols=295 Identities=13% Similarity=0.172 Sum_probs=234.7
Q ss_pred eeeEeecCCCceEEEEEEeeCCC-EEEEEEeecCCCccceeeeEEEEeEeccCCCCCccc--eeeeccccCceEEEEeCC
Q 011970 120 RICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA--LFESESLKWPGFVEFDDV 196 (474)
Q Consensus 120 ~l~~l~g~~~~~i~sv~fspdg~-~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~--lf~~~~~~~~~~V~Fs~~ 196 (474)
..-+|+| |++.|.+++..+.+. .|.++| -| .++-+|++..-....+.+ .|+. |-..+..|+.+ +
T Consensus 7 l~~tl~g-h~d~Vt~la~~~~~~~~l~sas----rD------k~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s-~ 73 (315)
T KOG0279|consen 7 LRGTLEG-HTDWVTALAIKIKNSDILVSAS----RD------KTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLS-S 73 (315)
T ss_pred eeeeecC-CCceEEEEEeecCCCceEEEcc----cc------eEEEEEEeccCccccCceeeeeec-cceEecceEEc-c
Confidence 3458887 779999999999854 555544 55 688899874433322222 3332 33344578898 7
Q ss_pred CCeEEEEecCCCcEEEeecCCCeEEEEE--cCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeec--Ccc
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL--LHR 272 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~~l~tl--~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h--~~~ 272 (474)
||++..|+|.|+++|+||+++|++...| |...|.+|+|||+..-+++ +|.|+||||||+. |+|..++..+ ..+
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivS--GSrDkTiklwnt~-g~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVS--GSRDKTIKLWNTL-GVCKYTIHEDSHREW 150 (315)
T ss_pred CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeec--CCCcceeeeeeec-ccEEEEEecCCCcCc
Confidence 9999999999999999999999876655 4568999999985444443 3679999999985 5777777644 689
Q ss_pred eeEEEEEecC-CCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEe
Q 011970 273 NKKVDFIEQF-NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 349 (474)
Q Consensus 273 v~~V~F~~~~-~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl 349 (474)
|..|.|+|.. +-.|+++++|+|+|+||+++-++...+.||+..++.+++||||.+.++|. |+.+-|||++ |+++.+|
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl 230 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL 230 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec
Confidence 9999999643 45777789999999999999999999999999999999999999999999 9999999995 9999999
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccc
Q 011970 350 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 429 (474)
Q Consensus 350 ~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~ 429 (474)
++... |++++|+|+--.|+-+- +..|||||+.++.|+.+|+-.-..|..+
T Consensus 231 ~a~~~------v~sl~fspnrywL~~at------------~~sIkIwdl~~~~~v~~l~~d~~g~s~~------------ 280 (315)
T KOG0279|consen 231 EAFDI------VNSLCFSPNRYWLCAAT------------ATSIKIWDLESKAVVEELKLDGIGPSSK------------ 280 (315)
T ss_pred cCCCe------EeeEEecCCceeEeecc------------CCceEEEeccchhhhhhccccccccccc------------
Confidence 85542 89999999988888654 6779999999999999986543211000
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 430 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
...+ .-.+|+||+||++|.+|-.|+.|++|.
T Consensus 281 ---------~~~~----~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 281 ---------AGDP----ICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred ---------cCCc----EEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 0111 567899999999999999999999996
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.9e-41 Score=339.95 Aligned_cols=235 Identities=16% Similarity=0.163 Sum_probs=217.7
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCC--c-eEEEEecCCCCccEEEEecCC
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPG--I-MLLIFNRSSSHVPLKILSIED 259 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg--~-~la~~s~~s~D~tIkLWdi~t 259 (474)
.+.+.+++|| .|++.||+||.+|++|||+..++..+.+|.+ ..|-++.|+|+ + .+|++ +.|+++|||++.+
T Consensus 175 ~rPis~~~fS-~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~---s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 175 TRPISGCSFS-RDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATA---SADGTVKLWKLSQ 250 (459)
T ss_pred CCcceeeEee-cCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeee---ccCCceeeeccCC
Confidence 3456678998 7999999999999999999999999999875 57999999995 2 55654 6699999999998
Q ss_pred CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEE
Q 011970 260 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 338 (474)
Q Consensus 260 G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIkl 338 (474)
-++|..|+||..+|-.|+|. |+|..|++++.|.|-+|||+.++..+-..+||...|..++|.|||-+++||+ |.+-+|
T Consensus 251 e~~l~~l~gH~~RVs~VafH-PsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFH-PSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred Ccchhhhhcchhhheeeeec-CCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 89999999999999999998 7799999999999999999999998888899999999999999999999999 999999
Q ss_pred EeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCc
Q 011970 339 WNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 417 (474)
Q Consensus 339 Wd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~ 417 (474)
||++ |.|+-.|+||... |.+|+|||+|..||+||. |+|+||||+.--+++.++.+|++
T Consensus 330 WDlRtgr~im~L~gH~k~-----I~~V~fsPNGy~lATgs~-----------Dnt~kVWDLR~r~~ly~ipAH~n----- 388 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKE-----ILSVAFSPNGYHLATGSS-----------DNTCKVWDLRMRSELYTIPAHSN----- 388 (459)
T ss_pred eecccCcEEEEecccccc-----eeeEeECCCceEEeecCC-----------CCcEEEeeecccccceecccccc-----
Confidence 9995 9999999999987 689999999999999876 99999999999999999999997
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcC-CCCEEEEEcCCCcEEEccC
Q 011970 418 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE-ERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSp-Dg~~LaSgs~DgtVklWd~ 474 (474)
-|+.|-|+| .|.+|+|+|.|+|+|||..
T Consensus 389 -----------------------------lVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 389 -----------------------------LVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred -----------------------------hhhheEecccCCeEEEEcccCcceeeecC
Confidence 899999999 8899999999999999963
No 8
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=9.5e-38 Score=290.00 Aligned_cols=284 Identities=17% Similarity=0.270 Sum_probs=242.6
Q ss_pred eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeE
Q 011970 121 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKV 200 (474)
Q Consensus 121 l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~ 200 (474)
+++|.+ |.+.|.++.|+|+++.|++++ .+ ..+.+|++..++.... +. .+...+..+.|+ |+++.
T Consensus 2 ~~~~~~-h~~~i~~~~~~~~~~~l~~~~----~~------g~i~i~~~~~~~~~~~---~~-~~~~~i~~~~~~-~~~~~ 65 (289)
T cd00200 2 RRTLKG-HTGGVTCVAFSPDGKLLATGS----GD------GTIKVWDLETGELLRT---LK-GHTGPVRDVAAS-ADGTY 65 (289)
T ss_pred chHhcc-cCCCEEEEEEcCCCCEEEEee----cC------cEEEEEEeeCCCcEEE---Ee-cCCcceeEEEEC-CCCCE
Confidence 456775 779999999999999999865 34 6899999988875221 21 123344589998 78999
Q ss_pred EEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEE
Q 011970 201 LTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 278 (474)
Q Consensus 201 LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F 278 (474)
|++++.|++|++||+.+++.+..+.. ..|.+++|+|++.+++++ +.|+.|++||+.+++++..+..|...+..++|
T Consensus 66 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSS--SRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred EEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEe--cCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence 99999999999999999887777753 479999999865444442 34789999999999999999988888999999
Q ss_pred EecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCc
Q 011970 279 IEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWH 356 (474)
Q Consensus 279 ~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~ 356 (474)
.+ ++..+++++.|+.|++||+++++++..+..|...+.++.|+|+++.+++++ |+.|++||++ ++++..+++|...
T Consensus 144 ~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~- 221 (289)
T cd00200 144 SP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG- 221 (289)
T ss_pred cC-cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCc-
Confidence 84 455555556699999999999999999889999999999999998888888 9999999996 9999999888875
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccc
Q 011970 357 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 436 (474)
Q Consensus 357 ~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (474)
+..++|+|+++++++++. |+.|++||+.+++++..+.+|..
T Consensus 222 ----i~~~~~~~~~~~~~~~~~-----------~~~i~i~~~~~~~~~~~~~~~~~------------------------ 262 (289)
T cd00200 222 ----VNSVAFSPDGYLLASGSE-----------DGTIRVWDLRTGECVQTLSGHTN------------------------ 262 (289)
T ss_pred ----eEEEEEcCCCcEEEEEcC-----------CCcEEEEEcCCceeEEEccccCC------------------------
Confidence 689999999999999875 99999999999999999998875
Q ss_pred ccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 437 IRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 437 ~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|.++.|+|+++.|++++.|+.|++|+
T Consensus 263 ----------~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 263 ----------SVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ----------cEEEEEECCCCCEEEEecCCCeEEecC
Confidence 899999999999999999999999997
No 9
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=9.5e-38 Score=350.85 Aligned_cols=316 Identities=16% Similarity=0.185 Sum_probs=248.4
Q ss_pred CCeEEeeeccccceeeEeecC----CCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC---Cccce
Q 011970 107 SGVCAAFSRETNRRICFLNVS----PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD---SGFAL 179 (474)
Q Consensus 107 dgtiklW~~~tg~~l~~l~g~----~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~---~~~~l 179 (474)
+|.|++|+..+-+....+..+ |.+.|.+++|+|+|+.||+++ .| ++++||++...... ...+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg----~D------~~I~iwd~~~~~~~~~~~~~~~ 526 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAG----VN------KKIKIFECESIIKDGRDIHYPV 526 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEe----CC------CEEEEEECCcccccccccccce
Confidence 788999998865554444422 788999999999999999976 55 69999997532110 00111
Q ss_pred eeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-C-ceEEEEecCCCCccEEEE
Q 011970 180 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-G-IMLLIFNRSSSHVPLKIL 255 (474)
Q Consensus 180 f~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g-~~la~~s~~s~D~tIkLW 255 (474)
........+..++|+++++.+||+++.|++|+|||+.+++++.++. ...|++|+|+| + ..|+++ +.|++|+||
T Consensus 527 ~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sg---s~Dg~v~iW 603 (793)
T PLN00181 527 VELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASG---SDDGSVKLW 603 (793)
T ss_pred EEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEE---cCCCEEEEE
Confidence 2211123455789987778999999999999999999999888875 46799999996 4 456665 568999999
Q ss_pred ecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc-eEEeccccCCceEEEEEcCCCcEEEEEc-C
Q 011970 256 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFR-N 333 (474)
Q Consensus 256 di~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~-~~~~l~~h~~~v~sv~Fspdg~llaS~s-D 333 (474)
|+.+|+++.++.++ ..+..+.|.++++..+++++.|++|++||+++++ .+.++.+|...|..+.|+ ++.+|+|++ |
T Consensus 604 d~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D 681 (793)
T PLN00181 604 SINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTD 681 (793)
T ss_pred ECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECC
Confidence 99999999999865 5789999987778888889999999999999876 567788999999999997 677888988 9
Q ss_pred CcEEEEeCC-------CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 334 RTVAVWNFR-------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 334 ~tIklWd~~-------G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
++|+|||++ ++++.+|.+|... ++.++|+|+|++||+|+. |++|+||+..+++.+..
T Consensus 682 ~~ikiWd~~~~~~~~~~~~l~~~~gh~~~-----i~~v~~s~~~~~lasgs~-----------D~~v~iw~~~~~~~~~s 745 (793)
T PLN00181 682 NTLKLWDLSMSISGINETPLHSFMGHTNV-----KNFVGLSVSDGYIATGSE-----------TNEVFVYHKAFPMPVLS 745 (793)
T ss_pred CEEEEEeCCCCccccCCcceEEEcCCCCC-----eeEEEEcCCCCEEEEEeC-----------CCEEEEEECCCCCceEE
Confidence 999999984 3688999999876 688999999999999987 99999999877765544
Q ss_pred ecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 407 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 407 l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
+.-....+ ...+ ....+.+.|.+|+|+|+|+.|++|+.||+|+||++
T Consensus 746 ~~~~~~~~-------------------~~~~--~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 746 YKFKTIDP-------------------VSGL--EVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EecccCCc-------------------cccc--ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 32211000 0000 01122347999999999999999999999999985
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.2e-39 Score=321.62 Aligned_cols=278 Identities=13% Similarity=0.144 Sum_probs=242.3
Q ss_pred cccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEE
Q 011970 86 MKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (474)
Q Consensus 86 ~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~ 163 (474)
.++++|..|.|- .-++|++++|+|+++||..||++...|+| |.+.|.+|+|..-|+.||++|. | -++
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrG-Ht~sv~di~~~a~Gk~l~tcSs----D------l~~ 174 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRG-HTDSVFDISFDASGKYLATCSS----D------LSA 174 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhc-cccceeEEEEecCccEEEecCC----c------cch
Confidence 388999999998 77889999999999999999999999998 6677999999999999999873 3 238
Q ss_pred EEeEecc-CCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceE
Q 011970 164 KIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIML 240 (474)
Q Consensus 164 ~iw~i~~-G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg~~l 240 (474)
++||... -++.. .+..+++. +-+|.|- |.|.+|+|++.|.|||.|++.||-|++++.+ ++|..|+.+-+++|
T Consensus 175 ~LWd~~~~~~c~k--s~~gh~h~--vS~V~f~-P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti 249 (406)
T KOG0295|consen 175 KLWDFDTFFRCIK--SLIGHEHG--VSSVFFL-PLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTI 249 (406)
T ss_pred hheeHHHHHHHHH--HhcCcccc--eeeEEEE-ecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeE
Confidence 8999643 22222 24444433 3389998 7999999999999999999999999999975 69999999966655
Q ss_pred EEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecC---------C-----CeEEEEeCCCcEEEEECCCCceE
Q 011970 241 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF---------N-----EKLLVKQENENLQILDVRNAELM 306 (474)
Q Consensus 241 a~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~---------~-----~~ll~~~~D~tIkIWDv~tg~~~ 306 (474)
..+ ++.|.+|++|-+++++|...|+.|.+.+..|+|.+.. + ..+.+++.|+|||+||+.+|.|+
T Consensus 250 ~As--~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL 327 (406)
T KOG0295|consen 250 IAS--CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL 327 (406)
T ss_pred EEe--cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE
Confidence 544 4779999999999999999999999999999996421 1 36667899999999999999999
Q ss_pred EeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 011970 307 EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 384 (474)
Q Consensus 307 ~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~ 384 (474)
-++.||..+|+.++|+|.|++|+|.. |+|+++||++ ++|..+++.|... |+++.|..+--+++||+-
T Consensus 328 ~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf-----vt~lDfh~~~p~VvTGsV------ 396 (406)
T KOG0295|consen 328 FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF-----VTSLDFHKTAPYVVTGSV------ 396 (406)
T ss_pred EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce-----eEEEecCCCCceEEeccc------
Confidence 99999999999999999999999999 9999999995 9999999999987 789999999999999987
Q ss_pred cccCCCCeEEEEe
Q 011970 385 WMEGSAGSINVSS 397 (474)
Q Consensus 385 ~~~s~DgtIklWd 397 (474)
|+++|+|.
T Consensus 397 -----dqt~KvwE 404 (406)
T KOG0295|consen 397 -----DQTVKVWE 404 (406)
T ss_pred -----cceeeeee
Confidence 99999995
No 11
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9e-38 Score=331.60 Aligned_cols=287 Identities=17% Similarity=0.252 Sum_probs=247.8
Q ss_pred eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCC--CCCccceeeeccccCceEEEEeCCCC
Q 011970 121 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK--PDSGFALFESESLKWPGFVEFDDVNG 198 (474)
Q Consensus 121 l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~--~~~~~~lf~~~~~~~~~~V~Fs~~nG 198 (474)
.+++.+.+...|.++.|+|||+.|++++ -+ ..+++|+...++ +.. .+ .+|...|..++|+ |||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~----~~------~~i~~~~~~~~~~~~~~--~l--~~h~~~v~~~~fs-~d~ 215 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAAS----SD------GLIRIWKLEGIKSNLLR--EL--SGHTRGVSDVAFS-PDG 215 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEcc----CC------CcEEEeecccccchhhc--cc--cccccceeeeEEC-CCC
Confidence 4556665578899999999999998865 34 588999986666 322 12 2456678899998 799
Q ss_pred eEEEEecCCCcEEEeec-CCCeEEEEEcC--CcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeEEEEEeecCccee
Q 011970 199 KVLTYSAQDSIYKVFDL-KNYTMLYSISD--KHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK 274 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl-~tg~~l~tl~~--~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~ 274 (474)
++|++++.|++|||||+ ..+.+++++.+ ..|.+++|+|.+ +++++ +.|++|||||+++|+|+.+|.+|.+.+.
T Consensus 216 ~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sg---s~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 216 SYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSG---SDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred cEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEe---cCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 99999999999999999 67799999975 579999999854 55544 6799999999999999999999999999
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEECCCCc--eEEeccccCCc--eEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEE
Q 011970 275 KVDFIEQFNEKLLVKQENENLQILDVRNAE--LMEVSRTEFMT--PSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS 348 (474)
Q Consensus 275 ~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~--~~~~l~~h~~~--v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~t 348 (474)
.++|. +++..|++++.|++|+|||+.+++ |++++.++... ++.+.|+|+|++++++. |+++++||+. +.++.+
T Consensus 293 ~~~f~-~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 293 GLAFS-PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGT 371 (456)
T ss_pred EEEEC-CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceee
Confidence 99997 678888889999999999999999 77887776655 89999999999999999 9999999996 999999
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC-CCCCCCccccCCCCCCc
Q 011970 349 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT-NCSPKVDDELGSSSTGK 427 (474)
Q Consensus 349 l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH-~~~~~~~~~~~~~~~~~ 427 (474)
+.+|..-+ .| ..+..++++|++|.||+. |++|.+||+.++..+..+++| ..
T Consensus 372 ~~~~~~~~-~~-~~~~~~~~~~~~i~sg~~-----------d~~v~~~~~~s~~~~~~l~~h~~~--------------- 423 (456)
T KOG0266|consen 372 YTGHSNLV-RC-IFSPTLSTGGKLIYSGSE-----------DGSVYVWDSSSGGILQRLEGHSKA--------------- 423 (456)
T ss_pred ecccCCcc-ee-EecccccCCCCeEEEEeC-----------CceEEEEeCCccchhhhhcCCCCC---------------
Confidence 99998753 23 355666999999999987 999999999999999999999 53
Q ss_pred cccccccccccccccccccCEEEEEEcCCCCEEEEEc--CCCcEEEcc
Q 011970 428 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN--RHGLVHVWS 473 (474)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs--~DgtVklWd 473 (474)
.|..++++|..+++++++ .|+.|++|.
T Consensus 424 -------------------~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 424 -------------------AVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred -------------------ceeccccCCCcCeeeecCcCCCceEEEec
Confidence 788999999999999999 899999996
No 12
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.1e-39 Score=341.73 Aligned_cols=223 Identities=18% Similarity=0.223 Sum_probs=191.9
Q ss_pred CCeEEEEecCCCcEEEeecCCCeEE------EEEcCCcEEEEEEcC-C-ceEEEEecCCCCccEEEEecCCCe-----EE
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYTML------YSISDKHVQEIKISP-G-IMLLIFNRSSSHVPLKILSIEDGT-----VL 263 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~~l------~tl~~~~V~~vafSp-g-~~la~~s~~s~D~tIkLWdi~tG~-----~L 263 (474)
.|-+|||||-|.+++||.++++.+. .+.|.+.|-+|+++- + ..+++. |.|.|||+|++..-+ ..
T Consensus 376 ~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsv---S~D~tlK~W~l~~s~~~~~~~~ 452 (775)
T KOG0319|consen 376 SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSV---SQDCTLKLWDLPKSKETAFPIV 452 (775)
T ss_pred cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEe---cCCceEEEecCCCcccccccce
Confidence 6889999999999999999655532 234567899999994 3 344443 679999999986511 11
Q ss_pred E----EEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEE
Q 011970 264 K----VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 338 (474)
Q Consensus 264 ~----tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIkl 338 (474)
. +-..|...|++|+.+| .+..++++|.|+|.|||++.+++++.+|.||...||+|.|+|..|++||+| |.||||
T Consensus 453 ~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKI 531 (775)
T KOG0319|consen 453 LTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKI 531 (775)
T ss_pred ehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEE
Confidence 1 2235778899999874 444555578999999999999999999999999999999999999999999 999999
Q ss_pred EeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCc
Q 011970 339 WNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 417 (474)
Q Consensus 339 Wd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~ 417 (474)
|.++ ..|++||+||... |.-+.|-.+|+.|+|++. ||-|||||+.|++|+.+|.+|++
T Consensus 532 W~is~fSClkT~eGH~~a-----Vlra~F~~~~~qliS~~a-----------dGliKlWnikt~eC~~tlD~H~D----- 590 (775)
T KOG0319|consen 532 WSISTFSCLKTFEGHTSA-----VLRASFIRNGKQLISAGA-----------DGLIKLWNIKTNECEMTLDAHND----- 590 (775)
T ss_pred EEeccceeeeeecCccce-----eEeeeeeeCCcEEEeccC-----------CCcEEEEeccchhhhhhhhhccc-----
Confidence 9995 9999999999976 788999999999999876 99999999999999999999997
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 418 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.||+++-+|++.+++||+.||.|-+|.
T Consensus 591 -----------------------------rvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 591 -----------------------------RVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred -----------------------------eeEEEeecCccceeEecCCCeEEEEee
Confidence 999999999999999999999999994
No 13
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-37 Score=333.14 Aligned_cols=322 Identities=11% Similarity=0.153 Sum_probs=257.0
Q ss_pred cccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEE
Q 011970 86 MKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRST 163 (474)
Q Consensus 86 ~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~ 163 (474)
-|..||.-.+|. +-++|+|+-||.+++||+..+.|+..|.| |.++|.++.|+|+-.+..-+| |..| .++
T Consensus 103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG-~gGvVssl~F~~~~~~~lL~s--g~~D------~~v 173 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKG-HGGVVSSLLFHPHWNRWLLAS--GATD------GTV 173 (775)
T ss_pred ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecC-CCceEEEEEeCCccchhheee--cCCC------ceE
Confidence 367788888887 99999999999999999999999999998 779999999999866533322 5677 899
Q ss_pred EEeEeccCCC-CCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC-CcEEEEEEcCC----
Q 011970 164 KIEYIRRGKP-DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISPG---- 237 (474)
Q Consensus 164 ~iw~i~~G~~-~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~-~~V~~vafSpg---- 237 (474)
++|++.++.. .. ++. .|...+.+++|+ +|+..+.|++.|+++-|||+.+++++.+++- ..+.++.+-+.
T Consensus 174 ~vwnl~~~~tcl~---~~~-~H~S~vtsL~~~-~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~ 248 (775)
T KOG0319|consen 174 RVWNLNDKRTCLH---TMI-LHKSAVTSLAFS-EDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGG 248 (775)
T ss_pred EEEEcccCchHHH---HHH-hhhhheeeeeec-cCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCC
Confidence 9999986664 22 222 356678899998 7999999999999999999999999988873 45666666642
Q ss_pred --ceEEEEecCCCCccEEEEecCCCeEEEE--------------------------------------------------
Q 011970 238 --IMLLIFNRSSSHVPLKILSIEDGTVLKV-------------------------------------------------- 265 (474)
Q Consensus 238 --~~la~~s~~s~D~tIkLWdi~tG~~L~t-------------------------------------------------- 265 (474)
..+.+. ++++.+++||.++|+|+..
T Consensus 249 ~~~~~~Ta---G~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndE 325 (775)
T KOG0319|consen 249 KGEYIITA---GGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDE 325 (775)
T ss_pred cceEEEEe---cCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchh
Confidence 344443 4467777777777766532
Q ss_pred -----------------------------------EeecCcceeEEE---------------------------------
Q 011970 266 -----------------------------------FYHLLHRNKKVD--------------------------------- 277 (474)
Q Consensus 266 -----------------------------------l~~h~~~v~~V~--------------------------------- 277 (474)
+.||...|.+++
T Consensus 326 I~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a 405 (775)
T KOG0319|consen 326 ILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA 405 (775)
T ss_pred heeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh
Confidence 223333334443
Q ss_pred -------------EEecCCCeEEEEeCCCcEEEEECCCCc---------eEEeccccCCceEEEEEcCCCcEEEEEc-CC
Q 011970 278 -------------FIEQFNEKLLVKQENENLQILDVRNAE---------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NR 334 (474)
Q Consensus 278 -------------F~~~~~~~ll~~~~D~tIkIWDv~tg~---------~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~ 334 (474)
++--....++++|.|+|||+|++...+ |..+-..|...|.+|+.+|+.+++||+| |+
T Consensus 406 ~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDk 485 (775)
T KOG0319|consen 406 QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDK 485 (775)
T ss_pred hhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccccc
Confidence 211111245556777888888776522 1123467999999999999999999999 99
Q ss_pred cEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCC
Q 011970 335 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 413 (474)
Q Consensus 335 tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~ 413 (474)
|.|||+++ ++++.+|.||.-. ||+|.|+|..|++|++|. |+|||||.|.+..|++||.||++
T Consensus 486 taKiW~le~~~l~~vLsGH~RG-----vw~V~Fs~~dq~laT~Sg-----------D~TvKIW~is~fSClkT~eGH~~- 548 (775)
T KOG0319|consen 486 TAKIWDLEQLRLLGVLSGHTRG-----VWCVSFSKNDQLLATCSG-----------DKTVKIWSISTFSCLKTFEGHTS- 548 (775)
T ss_pred ceeeecccCceEEEEeeCCccc-----eEEEEeccccceeEeccC-----------CceEEEEEeccceeeeeecCccc-
Confidence 99999995 9999999999976 799999999999999876 99999999999999999999997
Q ss_pred CCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 414 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|.-+.|=.+|+.|+|++.||.||||++
T Consensus 549 ---------------------------------aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 549 ---------------------------------AVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred ---------------------------------eeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 8999999999999999999999999984
No 14
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.4e-36 Score=293.14 Aligned_cols=280 Identities=13% Similarity=0.201 Sum_probs=236.6
Q ss_pred cEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccc
Q 011970 99 DIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (474)
Q Consensus 99 ~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~ 178 (474)
-+||++++|.|||+|...||.|.+|++ +++..|+.+...||+..||.|. . ..|||+|+.++++.. ..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~-----~------qhvRlyD~~S~np~P-v~ 77 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAG-----N------QHVRLYDLNSNNPNP-VA 77 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhcc-----C------CeeEEEEccCCCCCc-ee
Confidence 579999999999999999999999999 6889999999999999999854 2 689999999998742 22
Q ss_pred eeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEec
Q 011970 179 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSI 257 (474)
Q Consensus 179 lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi 257 (474)
-|+. +.+-|.+|.|- -||+.+.+||.|||+||||+..-.|.+.+. ...|.+|.++|.+.=++++ ..++.|++||+
T Consensus 78 t~e~-h~kNVtaVgF~-~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~--dqsg~irvWDl 153 (311)
T KOG0315|consen 78 TFEG-HTKNVTAVGFQ-CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISG--DQSGNIRVWDL 153 (311)
T ss_pred EEec-cCCceEEEEEe-ecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEee--cCCCcEEEEEc
Confidence 3442 56778899997 799999999999999999999988877775 4689999999965555543 34578999999
Q ss_pred CCCeEEEEEe-ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc------eEEeccccCCceEEEEEcCCCcEEEE
Q 011970 258 EDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE------LMEVSRTEFMTPSAFIFLYENQLFLT 330 (474)
Q Consensus 258 ~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~------~~~~l~~h~~~v~sv~Fspdg~llaS 330 (474)
.+-.|-..+- .-.-.+.++... |+|.++++.-.-|+..+|++-++. .+..++.|...+..+.||||+++||+
T Consensus 154 ~~~~c~~~liPe~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat 232 (311)
T KOG0315|consen 154 GENSCTHELIPEDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLAT 232 (311)
T ss_pred cCCccccccCCCCCcceeeEEEc-CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEe
Confidence 8876766554 223456777754 778888888899999999998754 34557889999999999999999999
Q ss_pred Ec-CCcEEEEeCCC--cEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe
Q 011970 331 FR-NRTVAVWNFRG--ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 407 (474)
Q Consensus 331 ~s-D~tIklWd~~G--~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 407 (474)
+| |.|+|||+.++ ++-..+++|+.| ||..+||.||+||++|+. |+++||||+..|+.++..
T Consensus 233 ~ssdktv~iwn~~~~~kle~~l~gh~rW-----vWdc~FS~dg~YlvTass-----------d~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 233 CSSDKTVKIWNTDDFFKLELVLTGHQRW-----VWDCAFSADGEYLVTASS-----------DHTARLWDLSAGKEVRQY 296 (311)
T ss_pred ecCCceEEEEecCCceeeEEEeecCCce-----EEeeeeccCccEEEecCC-----------CCceeecccccCceeeec
Confidence 99 99999999975 455689999999 799999999999999875 999999999999999999
Q ss_pred cCCCC
Q 011970 408 NATNC 412 (474)
Q Consensus 408 ~gH~~ 412 (474)
.||-.
T Consensus 297 ~gh~K 301 (311)
T KOG0315|consen 297 QGHHK 301 (311)
T ss_pred CCccc
Confidence 99973
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.9e-37 Score=333.39 Aligned_cols=276 Identities=13% Similarity=0.173 Sum_probs=233.6
Q ss_pred ceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCC
Q 011970 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (474)
Q Consensus 119 ~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG 198 (474)
-|+.|+.. ....+.+..||+|+.+||. |-.| -.|++|.+..-++- +|-... +.
T Consensus 369 ic~YT~~n-t~~~v~ca~fSddssmlA~----Gf~d------S~i~~~Sl~p~kl~---~lk~~~-------------~l 421 (707)
T KOG0263|consen 369 ICMYTFHN-TYQGVTCAEFSDDSSMLAC----GFVD------SSVRVWSLTPKKLK---KLKDAS-------------DL 421 (707)
T ss_pred EEEEEEEE-cCCcceeEeecCCcchhhc----cccc------cEEEEEecchhhhc---cccchh-------------hh
Confidence 35556654 4467999999999998876 3344 57888887654531 111111 11
Q ss_pred eEEEEecCCCcEEEeecCCCeEEEEE--cCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEE
Q 011970 199 KVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 276 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl~tg~~l~tl--~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V 276 (474)
..+-..+.|-.+..-|...+...+++ |.+.|.++.|+|+..++.+ +|+|.+||||++.|-.|+-.++||..+||.|
T Consensus 422 ~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlS--cSED~svRLWsl~t~s~~V~y~GH~~PVwdV 499 (707)
T KOG0263|consen 422 SNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLS--CSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV 499 (707)
T ss_pred ccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceee--ccCCcceeeeecccceeEEEecCCCcceeeE
Confidence 12333455555667776665555555 4678999999997777776 4789999999999999999999999999999
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC-CCcEEEEeccCCC
Q 011970 277 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLL 354 (474)
Q Consensus 277 ~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~-~G~ll~tl~gH~~ 354 (474)
+|+ |.|-++|++|.|+|.+||...+-..++++.||...|..+.|.|+..++|||| |+|||+||+ +|..++.|.||..
T Consensus 500 ~F~-P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~ 578 (707)
T KOG0263|consen 500 QFA-PRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG 578 (707)
T ss_pred Eec-CCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCC
Confidence 998 7789999999999999999999999999999999999999999999999999 999999999 5999999999999
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccc
Q 011970 355 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 434 (474)
Q Consensus 355 ~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 434 (474)
. |.+++|||+|++||||+. ||.|+|||+.+|+.+.++.+|++
T Consensus 579 ~-----V~al~~Sp~Gr~LaSg~e-----------d~~I~iWDl~~~~~v~~l~~Ht~---------------------- 620 (707)
T KOG0263|consen 579 P-----VTALAFSPCGRYLASGDE-----------DGLIKIWDLANGSLVKQLKGHTG---------------------- 620 (707)
T ss_pred c-----eEEEEEcCCCceEeeccc-----------CCcEEEEEcCCCcchhhhhcccC----------------------
Confidence 7 789999999999999876 99999999999999999999986
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 435 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 435 ~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|++|.||.||..||+|+.|.+|+|||.
T Consensus 621 ------------ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 621 ------------TIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred ------------ceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 8999999999999999999999999984
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-35 Score=315.86 Aligned_cols=351 Identities=13% Similarity=0.175 Sum_probs=290.2
Q ss_pred hcccccceeecccCCCCCcc-ccccccccc------ccEEEEEee--ccEEEEeeCCCeEEeeeccccce--eeEeecCC
Q 011970 60 FRNMHLVEEYDTHDPKGHCP-FVLPFLMKR------TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRR--ICFLNVSP 128 (474)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~------~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~--l~~l~g~~ 128 (474)
|=-+++.+-.+.|..|.... .|+||-.|| ..|.+|-++ ...|+++|.|-++|||.+...+. .+.|+| |
T Consensus 110 ~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~g-H 188 (893)
T KOG0291|consen 110 FFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNG-H 188 (893)
T ss_pred EEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccC-C
Confidence 33455566667777777666 667775554 569999999 88999999999999999887666 677887 8
Q ss_pred CceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec--cCCCCC--------------------ccc--------
Q 011970 129 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--RGKPDS--------------------GFA-------- 178 (474)
Q Consensus 129 ~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~--~G~~~~--------------------~~~-------- 178 (474)
.+.|-+-||..|...|.|+|.+| .+-+|... -++... .-+
T Consensus 189 kd~VvacfF~~~~~~l~tvskdG----------~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k 258 (893)
T KOG0291|consen 189 KDYVVACFFGANSLDLYTVSKDG----------ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKK 258 (893)
T ss_pred CcceEEEEeccCcceEEEEecCc----------eEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEe
Confidence 89999999999999999998654 44455432 111110 001
Q ss_pred -eeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEc-CCceEEEEecCCCCccEEE
Q 011970 179 -LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKI 254 (474)
Q Consensus 179 -lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafS-pg~~la~~s~~s~D~tIkL 254 (474)
.|..+ ..-+.+.+|. +.-.+||.|=..|...|+.+..-++++.++ +..|..++|+ -|.+||.+++ .-+.+-+
T Consensus 259 ~~ln~~-~~kvtaa~fH-~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~--klgQLlV 334 (893)
T KOG0291|consen 259 HYLNQN-SSKVTAAAFH-KGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS--KLGQLLV 334 (893)
T ss_pred eeeccc-ccceeeeecc-CCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC--ccceEEE
Confidence 11111 1335578997 677899999999999999999999999886 6799999999 5999998853 3567999
Q ss_pred EecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-C
Q 011970 255 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N 333 (474)
Q Consensus 255 Wdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D 333 (474)
|+.++-.-+....+|..++.+++++ |||+.+++|++|+.|||||.++|-|+.++..|+..|.++.|+..|+.++|+| |
T Consensus 335 weWqsEsYVlKQQgH~~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLD 413 (893)
T KOG0291|consen 335 WEWQSESYVLKQQGHSDRITSLAYS-PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLD 413 (893)
T ss_pred EEeeccceeeeccccccceeeEEEC-CCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecC
Confidence 9998876677777999999999998 7888888999999999999999999999999999999999999999999999 9
Q ss_pred CcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCC
Q 011970 334 RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 412 (474)
Q Consensus 334 ~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~ 412 (474)
|||+.||+ ++.+-+||....... ...|+.-|.|.++..|+. .-=-|.+|+++|||.+-.|.||.+
T Consensus 414 GtVRAwDlkRYrNfRTft~P~p~Q----fscvavD~sGelV~AG~~----------d~F~IfvWS~qTGqllDiLsGHEg 479 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRTFTSPEPIQ----FSCVAVDPSGELVCAGAQ----------DSFEIFVWSVQTGQLLDILSGHEG 479 (893)
T ss_pred CeEEeeeecccceeeeecCCCcee----eeEEEEcCCCCEEEeecc----------ceEEEEEEEeecCeeeehhcCCCC
Confidence 99999999 599999998765432 467888899999998875 134699999999999999999997
Q ss_pred CCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 413 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
+|.+|+|+|+|+.|||||.|.|||+||+
T Consensus 480 ----------------------------------PVs~l~f~~~~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 480 ----------------------------------PVSGLSFSPDGSLLASGSWDKTVRIWDI 507 (893)
T ss_pred ----------------------------------cceeeEEccccCeEEeccccceEEEEEe
Confidence 8999999999999999999999999985
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-35 Score=290.43 Aligned_cols=280 Identities=11% Similarity=0.136 Sum_probs=234.7
Q ss_pred ccccEEEEEee---ccEEEEeeCCCeEEeeecc-----ccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccce
Q 011970 87 KRTKVIEIVAA---RDIVFALAHSGVCAAFSRE-----TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSL 158 (474)
Q Consensus 87 ~~~~V~~i~~s---~~~las~s~dgtiklW~~~-----tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~L 158 (474)
|...|.+++.. -++|.++|.|.++-+|++. .|..++-|.| |+..|..++.+|||++-.|+|. |
T Consensus 14 h~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s~dg~~alS~sw----D---- 84 (315)
T KOG0279|consen 14 HTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLSSDGNFALSASW----D---- 84 (315)
T ss_pred CCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec-cceEecceEEccCCceEEeccc----c----
Confidence 55567777766 7999999999999999864 5788999998 8889999999999999999774 4
Q ss_pred eeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC----CcEEEEEE
Q 011970 159 KCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKI 234 (474)
Q Consensus 159 k~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~----~~V~~vaf 234 (474)
+++++||+..|+... .|. +|.+-+-+|+|+ +|...|+|||.|+||||||.. |.|.+++.. ++|..|.|
T Consensus 85 --~~lrlWDl~~g~~t~---~f~-GH~~dVlsva~s-~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrf 156 (315)
T KOG0279|consen 85 --GTLRLWDLATGESTR---RFV-GHTKDVLSVAFS-TDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRF 156 (315)
T ss_pred --ceEEEEEecCCcEEE---EEE-ecCCceEEEEec-CCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEE
Confidence 699999999998633 455 366778899998 788899999999999999974 678888863 58999999
Q ss_pred cCC--c-eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccc
Q 011970 235 SPG--I-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT 311 (474)
Q Consensus 235 Spg--~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~ 311 (474)
||. . ++++ ++.|+|||+||+++-++.++|.+|++.+..|+|+ |||..+++|+.|+.+-|||++.+++++.+.
T Consensus 157 sP~~~~p~Ivs---~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vS-pDGslcasGgkdg~~~LwdL~~~k~lysl~- 231 (315)
T KOG0279|consen 157 SPNESNPIIVS---ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVS-PDGSLCASGGKDGEAMLWDLNEGKNLYSLE- 231 (315)
T ss_pred cCCCCCcEEEE---ccCCceEEEEccCCcchhhccccccccEEEEEEC-CCCCEEecCCCCceEEEEEccCCceeEecc-
Confidence 995 3 4444 4779999999999999999999999999999998 788888889999999999999999998865
Q ss_pred cCCceEEEEEcCCCcEEEEEcCCcEEEEeCC-CcEEEEec----cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 011970 312 EFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFE----DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 386 (474)
Q Consensus 312 h~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~ll~tl~----gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~ 386 (474)
|+..|.+++|+|+--.|+.+-+..|||||++ +.++.+|. |......+....+++||+||+.|.+|..
T Consensus 232 a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t-------- 303 (315)
T KOG0279|consen 232 AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT-------- 303 (315)
T ss_pred CCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec--------
Confidence 7789999999998877766668889999996 88877655 2211111223468999999999999876
Q ss_pred cCCCCeEEEEeCC
Q 011970 387 EGSAGSINVSSIL 399 (474)
Q Consensus 387 ~s~DgtIklWdi~ 399 (474)
|+.|++|.+.
T Consensus 304 ---d~~irv~qv~ 313 (315)
T KOG0279|consen 304 ---DNVIRVWQVA 313 (315)
T ss_pred ---CCcEEEEEee
Confidence 9999999874
No 18
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.2e-36 Score=318.13 Aligned_cols=239 Identities=20% Similarity=0.310 Sum_probs=212.0
Q ss_pred cCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe--EEEEEc--CCcEEEEEEcCCc-eEEEEecCCCCccEEEEec-CC
Q 011970 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKHVQEIKISPGI-MLLIFNRSSSHVPLKILSI-ED 259 (474)
Q Consensus 186 ~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~--~l~tl~--~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi-~t 259 (474)
..+-.+.|+ +||+.|++++.|+++++|++.+++ +++++. ...|.+++|||++ .++++ +.|++|||||+ +.
T Consensus 160 ~sv~~~~fs-~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~---s~D~tiriwd~~~~ 235 (456)
T KOG0266|consen 160 PSVTCVDFS-PDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSG---SDDKTLRIWDLKDD 235 (456)
T ss_pred CceEEEEEc-CCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEe---cCCceEEEeeccCC
Confidence 345568998 799999999999999999998888 777774 4679999999866 55544 66999999999 67
Q ss_pred CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEE
Q 011970 260 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 338 (474)
Q Consensus 260 G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIkl 338 (474)
|.++++|++|...|.+++|++ .+..+++++.|++|||||+++++|++++.+|.+.|++++|++||++|++++ |++|+|
T Consensus 236 ~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~v 314 (456)
T KOG0266|consen 236 GRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRV 314 (456)
T ss_pred CeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEE
Confidence 799999999999999999995 457888889999999999999999999999999999999999999999999 999999
Q ss_pred EeCC-Cc--EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCC
Q 011970 339 WNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 415 (474)
Q Consensus 339 Wd~~-G~--ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~ 415 (474)
||+. |+ |+.++.++.... .++.+.|+|+|++|++++. |+++++||+..++|+.++.+|.+.
T Consensus 315 wd~~~~~~~~~~~~~~~~~~~---~~~~~~fsp~~~~ll~~~~-----------d~~~~~w~l~~~~~~~~~~~~~~~-- 378 (456)
T KOG0266|consen 315 WDLETGSKLCLKLLSGAENSA---PVTSVQFSPNGKYLLSASL-----------DRTLKLWDLRSGKSVGTYTGHSNL-- 378 (456)
T ss_pred EECCCCceeeeecccCCCCCC---ceeEEEECCCCcEEEEecC-----------CCeEEEEEccCCcceeeecccCCc--
Confidence 9995 88 788999988752 2799999999999999886 999999999999999999999851
Q ss_pred CccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 416 VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
. ..+.+..++++|+.|+||+.|+.|++|+.
T Consensus 379 -~----------------------------~~~~~~~~~~~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 379 -V----------------------------RCIFSPTLSTGGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred -c----------------------------eeEecccccCCCCeEEEEeCCceEEEEeC
Confidence 0 14667788999999999999999999984
No 19
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.7e-34 Score=266.84 Aligned_cols=276 Identities=17% Similarity=0.247 Sum_probs=237.6
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
|..+|..+.++ +++|++++.||.+++|+..+++.+..+.+ |...+.++.|+|+++.|++++ .+ ..+.
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~----~~------~~i~ 76 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASADGTYLASGS----SD------KTIR 76 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec-CCcceeEEEECCCCCEEEEEc----CC------CeEE
Confidence 56677777777 79999999999999999999998888886 778899999999999999865 35 6899
Q ss_pred EeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEE
Q 011970 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLI 242 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg~~la~ 242 (474)
+|++..++.... +. .+...+..+.|+ +++++|++++.|+.+++||+.+++++..+.. ..|.+++|+|++.+++
T Consensus 77 i~~~~~~~~~~~---~~-~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 151 (289)
T cd00200 77 LWDLETGECVRT---LT-GHTSYVSSVAFS-PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVA 151 (289)
T ss_pred EEEcCcccceEE---Ee-ccCCcEEEEEEc-CCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEE
Confidence 999988765332 22 123356689998 6889999999999999999999998888863 5699999999555554
Q ss_pred EecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEc
Q 011970 243 FNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL 322 (474)
Q Consensus 243 ~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fs 322 (474)
++ +.|+.|++||+++++++..+..|...+..++|. +++..+++++.|+.|++||+++++.+..+..|...+.++.|+
T Consensus 152 ~~--~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 228 (289)
T cd00200 152 SS--SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS-PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228 (289)
T ss_pred EE--cCCCcEEEEEccccccceeEecCccccceEEEC-CCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEc
Confidence 42 347899999999999999999888889999997 556788888889999999999999999988899999999999
Q ss_pred CCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 323 YENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 323 pdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
|+++++++++ |++|++||+. ++++..+.+|... +.+++|+|++++|++++. |++|++||
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~l~~~~~-----------d~~i~iw~ 289 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNS-----VTSLAWSPDGKRLASGSA-----------DGTIRIWD 289 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCc-----EEEEEECCCCCEEEEecC-----------CCeEEecC
Confidence 9999999999 9999999996 9999999998875 789999999999999876 99999996
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-34 Score=308.57 Aligned_cols=335 Identities=13% Similarity=0.152 Sum_probs=273.4
Q ss_pred ccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEe
Q 011970 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 89 ~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw 166 (474)
++|.+..|- -.+||++-.+|...|+.+..=.+|+.|.- .+..|..++||.-|+.||.++. |+.++-+|
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSi-s~~~I~t~~~N~tGDWiA~g~~---------klgQLlVw 335 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSI-SDQKILTVSFNSTGDWIAFGCS---------KLGQLLVW 335 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeec-ccceeeEEEecccCCEEEEcCC---------ccceEEEE
Confidence 678888777 78899999999999999998889999987 4578999999999999998651 24688899
Q ss_pred EeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEE
Q 011970 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIF 243 (474)
Q Consensus 167 ~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~ 243 (474)
+.+.-... +-+.+|...+.++++| |||+++|+|+.|+.|||||...|-|+.|+.. ..|..|.|+. |..++++
T Consensus 336 eWqsEsYV----lKQQgH~~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 336 EWQSESYV----LKQQGHSDRITSLAYS-PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred Eeecccee----eeccccccceeeEEEC-CCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEe
Confidence 98776652 2333466677799998 8999999999999999999999999999974 5799999994 7777766
Q ss_pred ecCCCCccEEEEecCCCeEEEEEeecCcce-eEEEEEecCCCeEEEEe-CCCcEEEEECCCCceEEeccccCCceEEEEE
Q 011970 244 NRSSSHVPLKILSIEDGTVLKVFYHLLHRN-KKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIF 321 (474)
Q Consensus 244 s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v-~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~F 321 (474)
+-|+||+.||+..+.+.+||......- .+|+ ..|.|+.+.+|+ +.-.|.+|+++||+++.+|.||.++|..++|
T Consensus 411 ---SLDGtVRAwDlkRYrNfRTft~P~p~Qfscva-vD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f 486 (893)
T KOG0291|consen 411 ---SLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVA-VDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSF 486 (893)
T ss_pred ---ecCCeEEeeeecccceeeeecCCCceeeeEEE-EcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEE
Confidence 568999999999999999998653333 2333 236688888875 5678999999999999999999999999999
Q ss_pred cCCCcEEEEEc-CCcEEEEeC-C-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 322 LYENQLFLTFR-NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 322 spdg~llaS~s-D~tIklWd~-~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
+|+|++|+|+| |+|||+||+ . ...+.+++--.. |.+++|+|||+-||.+.- ||.|.+||+
T Consensus 487 ~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sd------vl~vsfrPdG~elaVaTl-----------dgqItf~d~ 549 (893)
T KOG0291|consen 487 SPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSD------VLAVSFRPDGKELAVATL-----------DGQITFFDI 549 (893)
T ss_pred ccccCeEEeccccceEEEEEeeccCceeeeEeeccc------eeEEEEcCCCCeEEEEEe-----------cceEEEEEh
Confidence 99999999999 999999998 3 446777774443 689999999999999876 999999999
Q ss_pred CCCeEEEEecCCCCCCCCccccCCCCCCccccccccccc-cccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 399 LTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI-RSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 399 ~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
..+..+.+|.|-.+...+. ...+. .+.-+..-+..+++.||+||+.|.+|+..+.|.|++.
T Consensus 550 ~~~~q~~~IdgrkD~~~gR---------------~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 550 KEAVQVGSIDGRKDLSGGR---------------KETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred hhceeeccccchhhccccc---------------cccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 9999999998865411110 01111 1111122348999999999999999999999999873
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.1e-34 Score=282.79 Aligned_cols=289 Identities=11% Similarity=0.149 Sum_probs=239.3
Q ss_pred cccceeecccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCC
Q 011970 63 MHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNND 142 (474)
Q Consensus 63 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~ 142 (474)
|+....++.|..|+.++...++ ...|+|+|+||.+-+||.-|....+.+.- +..+|...||+|.|+
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~D-------------sr~ivSaSqDGklIvWDs~TtnK~haipl-~s~WVMtCA~sPSg~ 110 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTD-------------SRRIVSASQDGKLIVWDSFTTNKVHAIPL-PSSWVMTCAYSPSGN 110 (343)
T ss_pred eeeEEEecccccceeeeEecCC-------------cCeEEeeccCCeEEEEEcccccceeEEec-CceeEEEEEECCCCC
Confidence 3344566666666666666555 89999999999999999999998888886 789999999999999
Q ss_pred EEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeee--ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE
Q 011970 143 SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES--ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM 220 (474)
Q Consensus 143 ~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~--~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~ 220 (474)
.+|.++ -| ..-.|+++...+-....+.-.. +|.+++-...|- +|++ |.++|.|.|.-+||+++|+.
T Consensus 111 ~VAcGG----Ld------N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~-dD~~-ilT~SGD~TCalWDie~g~~ 178 (343)
T KOG0286|consen 111 FVACGG----LD------NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFL-DDNH-ILTGSGDMTCALWDIETGQQ 178 (343)
T ss_pred eEEecC----cC------ceeEEEecccccccccceeeeeecCccceeEEEEEc-CCCc-eEecCCCceEEEEEcccceE
Confidence 999853 45 3555666653322111111111 356677778996 5775 55678899999999999999
Q ss_pred EEEEcC--CcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEE
Q 011970 221 LYSISD--KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQ 296 (474)
Q Consensus 221 l~tl~~--~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIk 296 (474)
+..+++ ..|.+++++| +.+++++ +-|++.||||++.|.|.++|.+|..-|.+|.|. |+|.-+++|++|+|.|
T Consensus 179 ~~~f~GH~gDV~slsl~p~~~ntFvSg---~cD~~aklWD~R~~~c~qtF~ghesDINsv~ff-P~G~afatGSDD~tcR 254 (343)
T KOG0286|consen 179 TQVFHGHTGDVMSLSLSPSDGNTFVSG---GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFF-PSGDAFATGSDDATCR 254 (343)
T ss_pred EEEecCCcccEEEEecCCCCCCeEEec---ccccceeeeeccCcceeEeecccccccceEEEc-cCCCeeeecCCCceeE
Confidence 999876 4799999998 4555544 569999999999999999999999999999998 6799999999999999
Q ss_pred EEECCCCceEEecccc--CCceEEEEEcCCCcEEEEEc-CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCE
Q 011970 297 ILDVRNAELMEVSRTE--FMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDL 372 (474)
Q Consensus 297 IWDv~tg~~~~~l~~h--~~~v~sv~Fspdg~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~ 372 (474)
++|++..+.+.++.+. ...|.+++||--|+||..+. |.++.+||. .|+.+..|.||.+. |..+..||||--
T Consensus 255 lyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNR-----vScl~~s~DG~a 329 (343)
T KOG0286|consen 255 LYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENR-----VSCLGVSPDGMA 329 (343)
T ss_pred EEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCe-----eEEEEECCCCcE
Confidence 9999999888876643 35899999999999999998 999999998 69999999999997 789999999999
Q ss_pred EEEEecCCCccccccCCCCeEEEEe
Q 011970 373 IISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 373 LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
+++||. |.++|||.
T Consensus 330 v~TgSW-----------Ds~lriW~ 343 (343)
T KOG0286|consen 330 VATGSW-----------DSTLRIWA 343 (343)
T ss_pred EEecch-----------hHheeecC
Confidence 999987 99999995
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.6e-34 Score=293.10 Aligned_cols=318 Identities=13% Similarity=0.141 Sum_probs=263.2
Q ss_pred ccccccEEEEEee--cc-EEEEeeCCCeEEeeeccc--cceee-------E----eecCCCceEEEEEEeeCCCEEEEEE
Q 011970 85 LMKRTKVIEIVAA--RD-IVFALAHSGVCAAFSRET--NRRIC-------F----LNVSPDEVIRSLFYNKNNDSLITVS 148 (474)
Q Consensus 85 ~~~~~~V~~i~~s--~~-~las~s~dgtiklW~~~t--g~~l~-------~----l~g~~~~~i~sv~fspdg~~Lis~S 148 (474)
|+|.++|..-... .+ ++|+++.|-+.|+|++.. +.+.. + =.+..+.-|.+|+||-+|..||+++
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 4467777666666 45 999999999999999874 22211 1 0111234699999999999999966
Q ss_pred eecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--C
Q 011970 149 VYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D 226 (474)
Q Consensus 149 ~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~ 226 (474)
.| ..++||+ ..|.+..+ +. .|-+.|.++.+. -.|.+|+|++-|+|+-|||..+|+....+. .
T Consensus 255 ----~~------G~~riw~-~~G~l~~t---l~-~HkgPI~slKWn-k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s 318 (524)
T KOG0273|consen 255 ----ED------GEARIWN-KDGNLIST---LG-QHKGPIFSLKWN-KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHS 318 (524)
T ss_pred ----cC------cEEEEEe-cCchhhhh---hh-ccCCceEEEEEc-CCCCEEEeccCCccEEEEeccCceEEEeeeecc
Confidence 56 7999999 56665432 22 256778899997 799999999999999999999999766554 3
Q ss_pred CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceE
Q 011970 227 KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM 306 (474)
Q Consensus 227 ~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~ 306 (474)
..-.+|.+-.+..++++ +.|+.|++.-+..-.+.+||.||.+.|..+.|. |.+..|+++|.|+|+|||++..+.+.
T Consensus 319 ~~~lDVdW~~~~~F~ts---~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n-~tg~LLaS~SdD~TlkiWs~~~~~~~ 394 (524)
T KOG0273|consen 319 APALDVDWQSNDEFATS---STDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN-PTGSLLASCSDDGTLKIWSMGQSNSV 394 (524)
T ss_pred CCccceEEecCceEeec---CCCceEEEEEecCCCcceeeecccCceEEEEEC-CCCceEEEecCCCeeEeeecCCCcch
Confidence 33355666666777776 457889999998778999999999999999997 55677777899999999999999999
Q ss_pred EeccccCCceEEEEEcCCC---------cEEEEEc-CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEE
Q 011970 307 EVSRTEFMTPSAFIFLYEN---------QLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 375 (474)
Q Consensus 307 ~~l~~h~~~v~sv~Fspdg---------~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS 375 (474)
+-|.+|...++.+.+||+| -.+|+++ |.||++||+ +|.|+.+|.+|+.. |.+|+|||||+||||
T Consensus 395 ~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~p-----VysvafS~~g~ylAs 469 (524)
T KOG0273|consen 395 HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEP-----VYSVAFSPNGRYLAS 469 (524)
T ss_pred hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCc-----eEEEEecCCCcEEEe
Confidence 9999999999999999864 5678887 999999999 59999999999987 789999999999999
Q ss_pred EecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcC
Q 011970 376 YCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE 455 (474)
Q Consensus 376 ~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSp 455 (474)
|+. ||.|.||++++|+.++.+.+.. .|..|.|+.
T Consensus 470 Gs~-----------dg~V~iws~~~~~l~~s~~~~~-----------------------------------~Ifel~Wn~ 503 (524)
T KOG0273|consen 470 GSL-----------DGCVHIWSTKTGKLVKSYQGTG-----------------------------------GIFELCWNA 503 (524)
T ss_pred cCC-----------CCeeEeccccchheeEeecCCC-----------------------------------eEEEEEEcC
Confidence 987 9999999999999999998765 799999999
Q ss_pred CCCEEEEEcCCCcEEEcc
Q 011970 456 ERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 456 Dg~~LaSgs~DgtVklWd 473 (474)
+|..|.-.-.||.|.+=|
T Consensus 504 ~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 504 AGDKLGACASDGSVCVLD 521 (524)
T ss_pred CCCEEEEEecCCCceEEE
Confidence 999999888999988754
No 23
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5.4e-34 Score=285.73 Aligned_cols=297 Identities=15% Similarity=0.189 Sum_probs=250.4
Q ss_pred eeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEE
Q 011970 113 FSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVE 192 (474)
Q Consensus 113 W~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~ 192 (474)
|... -++.+.++| |.++|+||++-|-++.++|+| .| ++++|||+.+|++..+. .+|..-+..|+
T Consensus 137 WHap-wKl~rVi~g-HlgWVr~vavdP~n~wf~tgs----~D------rtikIwDlatg~Lkltl----tGhi~~vr~va 200 (460)
T KOG0285|consen 137 WHAP-WKLYRVISG-HLGWVRSVAVDPGNEWFATGS----AD------RTIKIWDLATGQLKLTL----TGHIETVRGVA 200 (460)
T ss_pred ccCc-ceehhhhhh-ccceEEEEeeCCCceeEEecC----CC------ceeEEEEcccCeEEEee----cchhheeeeee
Confidence 5533 567778897 889999999999999999955 66 89999999999984321 23555667899
Q ss_pred EeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeec
Q 011970 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 269 (474)
Q Consensus 193 Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h 269 (474)
|| +--.+|-|++.|++||-|||+..+.++..++ ..|.+++..| ...|+++ +.|.++|+||++|...+.+|.||
T Consensus 201 vS-~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~---grDst~RvWDiRtr~~V~~l~GH 276 (460)
T KOG0285|consen 201 VS-KRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTG---GRDSTIRVWDIRTRASVHVLSGH 276 (460)
T ss_pred ec-ccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEec---CCcceEEEeeecccceEEEecCC
Confidence 98 5778999999999999999998888877766 4799999999 5666665 66899999999999999999999
Q ss_pred CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeC-CCcEEEE
Q 011970 270 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTS 348 (474)
Q Consensus 270 ~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~-~G~ll~t 348 (474)
...|.+|.|. +.+.+++++|.|.||+|||++.|+.+.++.+|...|.+++..|.-.+|||++-..||-|++ +|+.++.
T Consensus 277 ~~~V~~V~~~-~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~n 355 (460)
T KOG0285|consen 277 TNPVASVMCQ-PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQN 355 (460)
T ss_pred CCcceeEEee-cCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhc
Confidence 9999999997 5678999999999999999999999999999999999999999999999999557999999 6999999
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcc
Q 011970 349 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 428 (474)
Q Consensus 349 l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~ 428 (474)
|.+|..- +|+++...||-++ +|+. .|+|-.||..+|-+-+.++.--. |. .
T Consensus 356 lsgh~~i-----intl~~nsD~v~~-~G~d-----------ng~~~fwdwksg~nyQ~~~t~vq-pG-S----------- 405 (460)
T KOG0285|consen 356 LSGHNAI-----INTLSVNSDGVLV-SGGD-----------NGSIMFWDWKSGHNYQRGQTIVQ-PG-S----------- 405 (460)
T ss_pred cccccce-----eeeeeeccCceEE-EcCC-----------ceEEEEEecCcCccccccccccc-CC-c-----------
Confidence 9999875 7999999887655 4554 89999999999977665522110 00 0
Q ss_pred ccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 429 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 429 ~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
. +.-..|++..|+..|..|+||..|++||+|.
T Consensus 406 ------l-------~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 406 ------L-------ESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred ------c-------ccccceeEEeecccCceEEeccCCcceEEEe
Confidence 0 0001799999999999999999999999995
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.6e-34 Score=291.70 Aligned_cols=283 Identities=13% Similarity=0.192 Sum_probs=239.9
Q ss_pred EeecCCCceEEEEEEeeCCC-EEEEEEeecCCCccceeeeEEEEeEecc--CCCCCccceeee---------ccccCceE
Q 011970 123 FLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRR--GKPDSGFALFES---------ESLKWPGF 190 (474)
Q Consensus 123 ~l~g~~~~~i~sv~fspdg~-~Lis~S~~~s~d~s~Lk~~~~~iw~i~~--G~~~~~~~lf~~---------~~~~~~~~ 190 (474)
.+.+ |...|.+-+|||--+ .|++ |+.+ -+.++|++.. +.+.. +..|.+ ...+-+.+
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llas----g~~~------s~ari~~l~e~~~~~~~-q~~lrh~~~~~~~s~~~nkdVT~ 240 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLAS----GSGD------STARIWNLLENSNIGST-QLVLRHCIREGGKSVPSNKDVTS 240 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhc----cCCc------cceeeeeehhhccccch-hhhhhhhhhhhcccCCccCCcce
Confidence 3444 777899999999988 6766 4466 6888898864 22210 111111 11245668
Q ss_pred EEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEe
Q 011970 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 191 V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~ 267 (474)
|+++ -+|..||+|+.||.+|+|+ ++|.++.+|.. ..|.+++++. |..|+++ +-|+|+-|||..+|++-+.|+
T Consensus 241 L~Wn-~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~---~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 241 LDWN-NDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSG---GVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred EEec-CCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEec---cCCccEEEEeccCceEEEeee
Confidence 9998 6999999999999999999 58888888864 6899999995 7777765 558999999999999999999
Q ss_pred ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC-CCcE
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGEL 345 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~-~G~l 345 (474)
.|...-..|+|. ++..+++++-|+.|+++-+....++.++.||.+.|.++-|.|.|.||+|+| |+|+|||+. ++.+
T Consensus 316 ~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~ 393 (524)
T KOG0273|consen 316 FHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS 393 (524)
T ss_pred eccCCccceEEe--cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc
Confidence 887776788884 478899999999999999999999999999999999999999999999999 999999998 5999
Q ss_pred EEEeccCCCCcCCCCeeEEEECCC---------CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCC
Q 011970 346 VTSFEDHLLWHPDCNTNNIYITSD---------QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 416 (474)
Q Consensus 346 l~tl~gH~~~~~~~~v~svafSpD---------g~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~ 416 (474)
...|.+|..- +..+.+||+ |..||+++. |+||++||+..|+|+++|..|+.
T Consensus 394 ~~~l~~Hske-----i~t~~wsp~g~v~~n~~~~~~l~sas~-----------dstV~lwdv~~gv~i~~f~kH~~---- 453 (524)
T KOG0273|consen 394 VHDLQAHSKE-----IYTIKWSPTGPVTSNPNMNLMLASASF-----------DSTVKLWDVESGVPIHTLMKHQE---- 453 (524)
T ss_pred hhhhhhhccc-----eeeEeecCCCCccCCCcCCceEEEeec-----------CCeEEEEEccCCceeEeeccCCC----
Confidence 9999999975 578888886 467777766 99999999999999999999996
Q ss_pred ccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 417 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|++|+|||||++||||+.||-|++|+.
T Consensus 454 ------------------------------pVysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 454 ------------------------------PVYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred ------------------------------ceEEEEecCCCcEEEecCCCCeeEeccc
Confidence 9999999999999999999999999974
No 25
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.2e-35 Score=296.80 Aligned_cols=269 Identities=15% Similarity=0.281 Sum_probs=222.0
Q ss_pred cccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeE
Q 011970 88 RTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (474)
Q Consensus 88 ~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~ 167 (474)
...|+.+.+..+.++||+.|.||++||..+-+|++.|.| |.+.|-++-|-. ..|||+| -| -|+++||
T Consensus 197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~G-HtGSVLCLqyd~--rviisGS----SD------sTvrvWD 263 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTG-HTGSVLCLQYDE--RVIVSGS----SD------STVRVWD 263 (499)
T ss_pred CCceEEEEecchhhhcccccCceEEeccccHHHHHhhhc-CCCcEEeeeccc--eEEEecC----CC------ceEEEEe
Confidence 446899999989999999999999999999999999998 778888888843 5777754 44 5888888
Q ss_pred eccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCC
Q 011970 168 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSS 247 (474)
Q Consensus 168 i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s 247 (474)
+.+|++.++ +|.+ ...+-.|.|+ || +++++|.|.+|.|||+.. | +
T Consensus 264 v~tge~l~t--lihH--ceaVLhlrf~--ng-~mvtcSkDrsiaVWdm~s------------------p----------s 308 (499)
T KOG0281|consen 264 VNTGEPLNT--LIHH--CEAVLHLRFS--NG-YMVTCSKDRSIAVWDMAS------------------P----------T 308 (499)
T ss_pred ccCCchhhH--Hhhh--cceeEEEEEe--CC-EEEEecCCceeEEEeccC------------------c----------h
Confidence 888888663 5554 3344567886 66 778888888888888742 1 0
Q ss_pred CCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcE
Q 011970 248 SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL 327 (474)
Q Consensus 248 ~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~l 327 (474)
|. +|.+.|.||...|..|+|. +.++++++.|.|||+|++.|+++++++.||.-.+-. .-|.|++
T Consensus 309 -~i----------t~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAC--lQYr~rl 372 (499)
T KOG0281|consen 309 -DI----------TLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIAC--LQYRDRL 372 (499)
T ss_pred -HH----------HHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccceeeehhhhccccccee--hhccCeE
Confidence 11 3456678999999999986 367778899999999999999999999999866533 3689999
Q ss_pred EEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe---
Q 011970 328 FLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK--- 402 (474)
Q Consensus 328 laS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~--- 402 (474)
++||| |.||+|||++ |.|++.|+||..- |+.|-| |.+.|+||.. ||+||+||+.++.
T Consensus 373 vVSGSSDntIRlwdi~~G~cLRvLeGHEeL-----vRciRF--d~krIVSGaY-----------DGkikvWdl~aaldpr 434 (499)
T KOG0281|consen 373 VVSGSSDNTIRLWDIECGACLRVLEGHEEL-----VRCIRF--DNKRIVSGAY-----------DGKIKVWDLQAALDPR 434 (499)
T ss_pred EEecCCCceEEEEeccccHHHHHHhchHHh-----hhheee--cCceeeeccc-----------cceEEEEecccccCCc
Confidence 99999 9999999996 9999999999987 678888 8899999877 9999999998875
Q ss_pred ------EEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 403 ------CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 403 ------cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
|+.++-.|++ .|..|.|+ --.|+|.+.|.||-+||.
T Consensus 435 a~~~~~Cl~~lv~hsg----------------------------------RVFrLQFD--~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 435 APASTLCLRTLVEHSG----------------------------------RVFRLQFD--EFQIISSSHDDTILIWDF 476 (499)
T ss_pred ccccchHHHhhhhccc----------------------------------eeEEEeec--ceEEEeccCCCeEEEEEc
Confidence 6677777765 89999995 467999999999999983
No 26
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=9.1e-33 Score=310.62 Aligned_cols=277 Identities=12% Similarity=0.118 Sum_probs=227.2
Q ss_pred ccccccEEEEEee--ccEEEEeeCCCeEEeeeccc----cc----eeeEeecCCCceEEEEEEeeC-CCEEEEEEeecCC
Q 011970 85 LMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRET----NR----RICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASD 153 (474)
Q Consensus 85 ~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~t----g~----~l~~l~g~~~~~i~sv~fspd-g~~Lis~S~~~s~ 153 (474)
+.|...|..|.|+ +++||+++.|++|+||+..+ +. .+..+.+ ...|.+++|+|. +..||+++ .
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~~las~~----~ 553 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS--RSKLSGICWNSYIKSQVASSN----F 553 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc--cCceeeEEeccCCCCEEEEEe----C
Confidence 3478889999999 99999999999999999753 22 2334443 367999999875 77888865 5
Q ss_pred CccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC-CcEEEE
Q 011970 154 NFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEI 232 (474)
Q Consensus 154 d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~-~~V~~v 232 (474)
| .+++|||+.+++.... +. +|...+.+|+|+|++|.+|++|+.|++|+|||+.+++++.++.. ..|.++
T Consensus 554 D------g~v~lWd~~~~~~~~~---~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v 623 (793)
T PLN00181 554 E------GVVQVWDVARSQLVTE---MK-EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCV 623 (793)
T ss_pred C------CeEEEEECCCCeEEEE---ec-CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEE
Confidence 5 6999999998886332 22 35566789999966899999999999999999999999988864 579999
Q ss_pred EEc-C-CceEEEEecCCCCccEEEEecCCCe-EEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC------C
Q 011970 233 KIS-P-GIMLLIFNRSSSHVPLKILSIEDGT-VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN------A 303 (474)
Q Consensus 233 afS-p-g~~la~~s~~s~D~tIkLWdi~tG~-~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t------g 303 (474)
+|+ + |..++++ +.|++|++||+++++ .+.++.+|...|..|.|. ++..+++++.|++|+|||+.. +
T Consensus 624 ~~~~~~g~~latg---s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~ 698 (793)
T PLN00181 624 QFPSESGRSLAFG---SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINE 698 (793)
T ss_pred EEeCCCCCEEEEE---eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCC
Confidence 996 4 5666665 558999999998876 578889999999999996 478899999999999999985 3
Q ss_pred ceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEe-------------ccCCCCcCCCCeeEEEECC
Q 011970 304 ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF-------------EDHLLWHPDCNTNNIYITS 368 (474)
Q Consensus 304 ~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl-------------~gH~~~~~~~~v~svafSp 368 (474)
.++..+.+|...+..++|+|++++|++++ |++|+||+.. +..+.++ .+|.. .|++++|+|
T Consensus 699 ~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-----~V~~v~ws~ 773 (793)
T PLN00181 699 TPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQ-----FISSVCWRG 773 (793)
T ss_pred cceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCc-----EEEEEEEcC
Confidence 67888999999999999999999999999 9999999984 5443322 22323 379999999
Q ss_pred CCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 369 DQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 369 Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
+|++|++|+. ||+|+||++
T Consensus 774 ~~~~lva~~~-----------dG~I~i~~~ 792 (793)
T PLN00181 774 QSSTLVAANS-----------TGNIKILEM 792 (793)
T ss_pred CCCeEEEecC-----------CCcEEEEec
Confidence 9999999876 999999996
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.4e-34 Score=306.93 Aligned_cols=277 Identities=13% Similarity=0.147 Sum_probs=223.5
Q ss_pred ccccccccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccce
Q 011970 81 VLPFLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSL 158 (474)
Q Consensus 81 ~~~~~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~L 158 (474)
+-.+.+....|.+..|+ +-+||.|-.|-.|++|.+. .+.|+.|.+.. . +. ++ =+.| +|
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~-p~kl~~lk~~~-~-l~----~~-----d~~s----ad---- 430 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLT-PKKLKKLKDAS-D-LS----NI-----DTES----AD---- 430 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecc-hhhhccccchh-h-hc----cc-----cccc----cc----
Confidence 34566677888899999 7799999999999999975 66777777522 1 11 11 1111 11
Q ss_pred eeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC
Q 011970 159 KCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP 236 (474)
Q Consensus 159 k~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp 236 (474)
-...+.|-..+-.- ..|.+ |.+.|..+.|+ |+-++|.|||.|+++|||.+.+-+|+-..+ ...||.|.|+|
T Consensus 431 --~~~~~~D~~~~~~~--~~L~G--H~GPVyg~sFs-Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P 503 (707)
T KOG0263|consen 431 --VDVDMLDDDSSGTS--RTLYG--HSGPVYGCSFS-PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP 503 (707)
T ss_pred --hhhhhccccCCcee--EEeec--CCCceeeeeec-ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC
Confidence 00111121111110 11343 45677789998 799999999999999999999998876555 46899999999
Q ss_pred -CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCc
Q 011970 237 -GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT 315 (474)
Q Consensus 237 -g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~ 315 (474)
|.++|++ |.|+|.+||+...-+.++.|.+|+.-|.+|+|.| ..-+++.||.|+|+|+||+.+|..++++.||..+
T Consensus 504 ~GyYFata---s~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~ 579 (707)
T KOG0263|consen 504 RGYYFATA---SHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGP 579 (707)
T ss_pred CceEEEec---CCCceeeeeecccCCchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCc
Confidence 7777775 7799999999999999999999999999999994 4567777899999999999999999999999999
Q ss_pred eEEEEEcCCCcEEEEEc-CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 011970 316 PSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 393 (474)
Q Consensus 316 v~sv~Fspdg~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtI 393 (474)
|.+++|||+|++||||+ |+.|+|||+ .|+++.+|.+|.+- |.++.||.||..||||+. |++|
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~t-----i~SlsFS~dg~vLasgg~-----------DnsV 643 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGT-----IYSLSFSRDGNVLASGGA-----------DNSV 643 (707)
T ss_pred eEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCc-----eeEEEEecCCCEEEecCC-----------CCeE
Confidence 99999999999999999 999999999 49999999999775 799999999999999876 9999
Q ss_pred EEEeCCCCeEE
Q 011970 394 NVSSILTGKCL 404 (474)
Q Consensus 394 klWdi~tG~cl 404 (474)
++||+..-.+.
T Consensus 644 ~lWD~~~~~~~ 654 (707)
T KOG0263|consen 644 RLWDLTKVIEL 654 (707)
T ss_pred EEEEchhhccc
Confidence 99998654444
No 28
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.5e-33 Score=274.18 Aligned_cols=286 Identities=14% Similarity=0.138 Sum_probs=244.3
Q ss_pred eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeE
Q 011970 121 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKV 200 (474)
Q Consensus 121 l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~ 200 (474)
+-.|.| |.+.|+.+.|+|+|..|||+ +.| +.|-||+ ..|.+.+.-.+- +|-+.|-.|.|. +||..
T Consensus 40 ~m~l~g-h~geI~~~~F~P~gs~~aSg----G~D------r~I~LWn-v~gdceN~~~lk--gHsgAVM~l~~~-~d~s~ 104 (338)
T KOG0265|consen 40 IMLLPG-HKGEIYTIKFHPDGSCFASG----GSD------RAIVLWN-VYGDCENFWVLK--GHSGAVMELHGM-RDGSH 104 (338)
T ss_pred hhhcCC-CcceEEEEEECCCCCeEeec----CCc------ceEEEEe-ccccccceeeec--cccceeEeeeec-cCCCE
Confidence 344665 88889999999999999994 477 8999999 556664432222 355677789998 79999
Q ss_pred EEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEE
Q 011970 201 LTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 277 (474)
Q Consensus 201 LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~ 277 (474)
|.|++.|++++.||+++|++.+.+.. .-|.++.-+. |..|+.+ ++.|+|+||||+++-+++++++. ...+.+|.
T Consensus 105 i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~S--gsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~ 181 (338)
T KOG0265|consen 105 ILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCS--GSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVG 181 (338)
T ss_pred EEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEe--cCCCceEEEEeecccchhhcccc-ceeEEEEE
Confidence 99999999999999999999987764 5688888664 6666665 47799999999999999999963 25689999
Q ss_pred EEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC----Cc-EEEEecc
Q 011970 278 FIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR----GE-LVTSFED 351 (474)
Q Consensus 278 F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~----G~-ll~tl~g 351 (474)
|. +..++..+++-|+.||+||++.++++.++.||.++|..+..+|+|..++|-+ |.|+++||++ ++ ||..|+|
T Consensus 182 f~-d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g 260 (338)
T KOG0265|consen 182 FK-DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG 260 (338)
T ss_pred ec-ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec
Confidence 97 6788999999999999999999999999999999999999999999999999 9999999973 44 6999999
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccc
Q 011970 352 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 431 (474)
Q Consensus 352 H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~ 431 (474)
|..-.- -+...+++||++..+..||. |..+.+||..+-.++.+|.||..
T Consensus 261 ~~hnfe-knlL~cswsp~~~~i~ags~-----------dr~vyvwd~~~r~~lyklpGh~g------------------- 309 (338)
T KOG0265|consen 261 HIHNFE-KNLLKCSWSPNGTKITAGSA-----------DRFVYVWDTTSRRILYKLPGHYG------------------- 309 (338)
T ss_pred chhhhh-hhcceeeccCCCCccccccc-----------cceEEEeecccccEEEEcCCcce-------------------
Confidence 875321 12457899999999999876 99999999877799999999996
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEE
Q 011970 432 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 471 (474)
Q Consensus 432 ~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVkl 471 (474)
.|..++|+|.-.+|.|++.|++|.|
T Consensus 310 ---------------svn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 310 ---------------SVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ---------------eEEEeeecCCCcEEEEeccCceeEe
Confidence 8999999999999999999999976
No 29
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=3.4e-33 Score=301.47 Aligned_cols=272 Identities=14% Similarity=0.194 Sum_probs=228.4
Q ss_pred EeeccEEEEeeCCCeEEeeeccccceeeE-eecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCC
Q 011970 95 VAARDIVFALAHSGVCAAFSRETNRRICF-LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 173 (474)
Q Consensus 95 ~~s~~~las~s~dgtiklW~~~tg~~l~~-l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~ 173 (474)
.+-.+.+++++.|+|+++|+..+|+.+.+ |.| |.+.||+++|..-+..|+++| .| +++++||..+|+|
T Consensus 215 q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~G-H~g~V~~l~~~~~~~~lvsgS----~D------~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 215 QLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVG-HFGGVWGLAFPSGGDKLVSGS----TD------KTERVWDCSTGEC 283 (537)
T ss_pred eeecCeEEecCCCceeEEeecccceEEEeeccC-CCCCceeEEEecCCCEEEEEe----cC------CcEEeEecCCCcE
Confidence 33468899999999999999999999999 998 889999999988788899966 66 7999999999999
Q ss_pred CCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEecCCCCcc
Q 011970 174 DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVP 251 (474)
Q Consensus 174 ~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~t 251 (474)
...+. + |..-+..+.. .+.++++||.|.||||||+.+|+++.++. ...|.+|.++ +.+++++ +.|++
T Consensus 284 ~~~l~--g--h~stv~~~~~---~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsg---s~d~~ 352 (537)
T KOG0274|consen 284 THSLQ--G--HTSSVRCLTI---DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSG---SYDGT 352 (537)
T ss_pred EEEec--C--CCceEEEEEc---cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCEEEEE---ecCce
Confidence 55322 1 2222223433 46789999999999999999999999986 4689999999 6777766 45789
Q ss_pred EEEEecCCCeEEEEEeecCcceeEEEEEecCC-CeEEEEeCCCcEEEEECCCC-ceEEeccccCCceEEEEEcCCCcEEE
Q 011970 252 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFL 329 (474)
Q Consensus 252 IkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~-~~ll~~~~D~tIkIWDv~tg-~~~~~l~~h~~~v~sv~Fspdg~lla 329 (474)
|++||+.+|+||++|.+|.++|.++.|. + ..+++|+.|++||+||+++. +|+.++.+|...|..+ ...+++|+
T Consensus 353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~---~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l--~~~~~~Lv 427 (537)
T KOG0274|consen 353 VKVWDPRTGKCLKSLSGHTGRVYSLIVD---SENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL--LLRDNFLV 427 (537)
T ss_pred EEEEEhhhceeeeeecCCcceEEEEEec---CcceEEeeeeccceEeecCCchhhhhhhhcCCccccccc--ccccceeE
Confidence 9999999999999999999999999864 4 78888999999999999999 9999999999888665 45678899
Q ss_pred EEc-CCcEEEEeCC-CcEEEEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 330 TFR-NRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 330 S~s-D~tIklWd~~-G~ll~tl~g-H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
|++ |++||+||.. |+|++++++ |... |..+++. ...+++++. |++++|||+.+|++.++
T Consensus 428 s~~aD~~Ik~WD~~~~~~~~~~~~~~~~~-----v~~l~~~--~~~il~s~~-----------~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 428 SSSADGTIKLWDAEEGECLRTLEGRHVGG-----VSALALG--KEEILCSSD-----------DGSVKLWDLRSGTLIRT 489 (537)
T ss_pred eccccccEEEeecccCceeeeeccCCccc-----EEEeecC--cceEEEEec-----------CCeeEEEecccCchhhh
Confidence 999 9999999995 999999999 4443 5666665 355666554 99999999999999998
Q ss_pred ecCCC
Q 011970 407 INATN 411 (474)
Q Consensus 407 l~gH~ 411 (474)
+-.++
T Consensus 490 l~~~~ 494 (537)
T KOG0274|consen 490 LLSTD 494 (537)
T ss_pred hhhcc
Confidence 85555
No 30
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.6e-32 Score=267.46 Aligned_cols=283 Identities=15% Similarity=0.184 Sum_probs=222.0
Q ss_pred eeeEeecCCCceEEEEEEeeC-CCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCC
Q 011970 120 RICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (474)
Q Consensus 120 ~l~~l~g~~~~~i~sv~fspd-g~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG 198 (474)
.+.+++| |.+.||+++++|- |..|||+| .| +.+|||+...|.-..-.......|.+.|++|||+ |.|
T Consensus 6 ~~~~~~g-h~~r~W~~awhp~~g~ilAscg----~D------k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws-p~g 73 (312)
T KOG0645|consen 6 LEQKLSG-HKDRVWSVAWHPGKGVILASCG----TD------KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS-PHG 73 (312)
T ss_pred eEEeecC-CCCcEEEEEeccCCceEEEeec----CC------ceEEEEecCCCCcEEEEEeccccchheeeeeeec-CCC
Confidence 4567887 6689999999998 88898865 67 8999999765443111112222467788899998 799
Q ss_pred eEEEEecCCCcEEEeecCCC--eEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCC---eEEEEEeecC
Q 011970 199 KVLTYSAQDSIYKVFDLKNY--TMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG---TVLKVFYHLL 270 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl~tg--~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG---~~L~tl~~h~ 270 (474)
++||++|.|.|+-||.-..+ +|+.+|.+ +.|.+|+||+ |..||+. +.|+.|=||.+..+ +|+..|+.|+
T Consensus 74 ~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATC---SRDKSVWiWe~deddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 74 RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATC---SRDKSVWIWEIDEDDEFECIAVLQEHT 150 (312)
T ss_pred cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEe---eCCCeEEEEEecCCCcEEEEeeecccc
Confidence 99999999999999986544 48888864 6899999996 7888876 55899999998644 6889999999
Q ss_pred cceeEEEEEecCCCeEEEEeCCCcEEEEECC---CCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEE
Q 011970 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVR---NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELV 346 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~---tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll 346 (474)
+-|+-|.|. |.-+.|+++|.|.|||+|.-. .-+|.+++.+|..+|++++|.|.|+.|+|++ |+||+||-..
T Consensus 151 qDVK~V~WH-Pt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~---- 225 (312)
T KOG0645|consen 151 QDVKHVIWH-PTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY---- 225 (312)
T ss_pred ccccEEEEc-CCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec----
Confidence 999999998 445677778999999999866 3469999999999999999999999999999 9999999953
Q ss_pred EEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC------eEEE-EecCCCCCCCCcc
Q 011970 347 TSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG------KCLA-KINATNCSPKVDD 418 (474)
Q Consensus 347 ~tl~g-H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG------~cl~-tl~gH~~~~~~~~ 418 (474)
.++.+ |... +..|++- ...|||++. |+.|+|.....+ +.+. .-.+|.
T Consensus 226 ~~~~~~~sr~-----~Y~v~W~--~~~IaS~gg-----------D~~i~lf~~s~~~d~p~~~l~~~~~~aHe------- 280 (312)
T KOG0645|consen 226 TDLSGMHSRA-----LYDVPWD--NGVIASGGG-----------DDAIRLFKESDSPDEPSWNLLAKKEGAHE------- 280 (312)
T ss_pred cCcchhcccc-----eEeeeec--ccceEeccC-----------CCEEEEEEecCCCCCchHHHHHhhhcccc-------
Confidence 22322 3333 5667776 568999876 999999975421 1111 112233
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCC-CCEEEEEcCCCcEEEccC
Q 011970 419 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEE-RNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpD-g~~LaSgs~DgtVklWd~ 474 (474)
..|.+|.|+|. ++.|+||+.||+|++|.+
T Consensus 281 ---------------------------~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 281 ---------------------------VDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred ---------------------------cccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 38999999995 789999999999999963
No 31
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=4.4e-33 Score=300.62 Aligned_cols=273 Identities=17% Similarity=0.250 Sum_probs=228.8
Q ss_pred eecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEE
Q 011970 124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY 203 (474)
Q Consensus 124 l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS 203 (474)
+.+.+...+.+..|. +| .+++ ++++ +++++|+..+|++... . +. +|.+-++.++|. .-+.+|.+
T Consensus 203 ~~~~~~~~~~~~q~~-~~-~~~~----~s~~------~tl~~~~~~~~~~i~~-~-l~-GH~g~V~~l~~~-~~~~~lvs 266 (537)
T KOG0274|consen 203 LLGTDDHVVLCLQLH-DG-FFKS----GSDD------STLHLWDLNNGYLILT-R-LV-GHFGGVWGLAFP-SGGDKLVS 266 (537)
T ss_pred ecccCcchhhhheee-cC-eEEe----cCCC------ceeEEeecccceEEEe-e-cc-CCCCCceeEEEe-cCCCEEEE
Confidence 333466778888888 44 4666 4466 8889999999997442 1 11 356677799995 35779999
Q ss_pred ecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEec
Q 011970 204 SAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 281 (474)
Q Consensus 204 ~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~ 281 (474)
||.|.|+||||+.+|+|.+++.+ ..|..+.+-+. .++ + ++.|.+||+|++++|++|+++.+|...|.+|...
T Consensus 267 gS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~-~~~-s--gs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-- 340 (537)
T KOG0274|consen 267 GSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF-LLV-S--GSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-- 340 (537)
T ss_pred EecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc-eEe-e--ccCCceEEEEeccCcceEEEeccccccEEEEEec--
Confidence 99999999999999999999975 45777776643 223 2 4679999999999999999999999999999975
Q ss_pred CCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-C-cEEEEeccCCCCcCC
Q 011970 282 FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G-ELVTSFEDHLLWHPD 358 (474)
Q Consensus 282 ~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G-~ll~tl~gH~~~~~~ 358 (474)
+..+++++.|++|++||+.+++|+.++.||..+|.++.|.+. +.+.+|+ |++||+||++ + +|+.+|.+|...
T Consensus 341 -~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--- 415 (537)
T KOG0274|consen 341 -EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--- 415 (537)
T ss_pred -CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc---
Confidence 678888999999999999999999999999999999988777 8899999 9999999996 6 799999999986
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC-CCCCCCCccccCCCCCCccccccccccc
Q 011970 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLNKSSYI 437 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (474)
|+.+ ...+++|+|++. |++||+||+.+|+|++++++ |..
T Consensus 416 --v~~l--~~~~~~Lvs~~a-----------D~~Ik~WD~~~~~~~~~~~~~~~~------------------------- 455 (537)
T KOG0274|consen 416 --VSSL--LLRDNFLVSSSA-----------DGTIKLWDAEEGECLRTLEGRHVG------------------------- 455 (537)
T ss_pred --cccc--ccccceeEeccc-----------cccEEEeecccCceeeeeccCCcc-------------------------
Confidence 4444 347899999876 99999999999999999999 543
Q ss_pred cccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 438 RSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 438 ~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|+++++. -..+++++.|+++++||.
T Consensus 456 ---------~v~~l~~~--~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 456 ---------GVSALALG--KEEILCSSDDGSVKLWDL 481 (537)
T ss_pred ---------cEEEeecC--cceEEEEecCCeeEEEec
Confidence 78888887 578999999999999984
No 32
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4e-35 Score=292.99 Aligned_cols=226 Identities=17% Similarity=0.293 Sum_probs=196.4
Q ss_pred ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCC
Q 011970 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG 260 (474)
Q Consensus 183 ~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG 260 (474)
+..+.+..|.++ |+ .++||..|.||||||.++..|+++|.+ +.|.++.|..- ++++ +|+|.||++||++||
T Consensus 195 e~skgVYClQYD--D~-kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r--viis--GSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--DE-KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER--VIVS--GSSDSTVRVWDVNTG 267 (499)
T ss_pred ccCCceEEEEec--ch-hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce--EEEe--cCCCceEEEEeccCC
Confidence 345667789996 45 689999999999999999999998875 57999988632 4444 367899999999999
Q ss_pred eEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc---eEEeccccCCceEEEEEcCCCcEEEEEc-CCcE
Q 011970 261 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 336 (474)
Q Consensus 261 ~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~---~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tI 336 (474)
++|+++-||...|.-+.|+ ++++++++.|.+|.+||+.+-. |.++|.||-..|..|.|+. ++++|+| |+||
T Consensus 268 e~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTi 342 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTI 342 (499)
T ss_pred chhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceE
Confidence 9999999999999999997 5899999999999999998754 5678999999999997764 5999999 9999
Q ss_pred EEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCC
Q 011970 337 AVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPK 415 (474)
Q Consensus 337 klWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~ 415 (474)
|+|+.+ +++++++.||.-.+ .+.--.|++++|||. |.||||||+..|+||+.|+||..
T Consensus 343 kvW~~st~efvRtl~gHkRGI-------AClQYr~rlvVSGSS-----------DntIRlwdi~~G~cLRvLeGHEe--- 401 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGI-------ACLQYRDRLVVSGSS-----------DNTIRLWDIECGACLRVLEGHEE--- 401 (499)
T ss_pred EEEeccceeeehhhhcccccc-------eehhccCeEEEecCC-----------CceEEEEeccccHHHHHHhchHH---
Confidence 999995 99999999998652 334558999999875 99999999999999999999995
Q ss_pred CccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 416 VDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
-|.++-|+ .+.|+||..||+||+||.
T Consensus 402 -------------------------------LvRciRFd--~krIVSGaYDGkikvWdl 427 (499)
T KOG0281|consen 402 -------------------------------LVRCIRFD--NKRIVSGAYDGKIKVWDL 427 (499)
T ss_pred -------------------------------hhhheeec--CceeeeccccceEEEEec
Confidence 78889995 567999999999999984
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1e-32 Score=266.35 Aligned_cols=261 Identities=11% Similarity=0.128 Sum_probs=217.1
Q ss_pred EEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe--E
Q 011970 143 SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--M 220 (474)
Q Consensus 143 ~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~--~ 220 (474)
+|+|+ +.| +|||+|...+|+|..+++ +. -..+..++.. ||++.||.++. .-||++|+.+++ +
T Consensus 12 iLvsA----~YD------hTIRfWqa~tG~C~rTiq---h~-dsqVNrLeiT-pdk~~LAaa~~-qhvRlyD~~S~np~P 75 (311)
T KOG0315|consen 12 ILVSA----GYD------HTIRFWQALTGICSRTIQ---HP-DSQVNRLEIT-PDKKDLAAAGN-QHVRLYDLNSNNPNP 75 (311)
T ss_pred EEEec----cCc------ceeeeeehhcCeEEEEEe---cC-ccceeeEEEc-CCcchhhhccC-CeeEEEEccCCCCCc
Confidence 56664 478 999999999999976533 21 2345589998 79999998875 569999999877 4
Q ss_pred EEEEc--CCcEEEEEEc-CCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEE
Q 011970 221 LYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQI 297 (474)
Q Consensus 221 l~tl~--~~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkI 297 (474)
+.++. .++|.+|.|. +|.++.++ |+|+++||||++.-.|.+.|++ ...|.+|...| ...-|+++-.++.|++
T Consensus 76 v~t~e~h~kNVtaVgF~~dgrWMyTg---seDgt~kIWdlR~~~~qR~~~~-~spVn~vvlhp-nQteLis~dqsg~irv 150 (311)
T KOG0315|consen 76 VATFEGHTKNVTAVGFQCDGRWMYTG---SEDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLHP-NQTELISGDQSGNIRV 150 (311)
T ss_pred eeEEeccCCceEEEEEeecCeEEEec---CCCceEEEEeccCcccchhccC-CCCcceEEecC-CcceEEeecCCCcEEE
Confidence 66664 5799999999 67777765 7799999999999888888875 48899999774 4456777789999999
Q ss_pred EECCCCceEEecccc-CCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-Cc------EEEEeccCCCCcCCCCeeEEEECC
Q 011970 298 LDVRNAELMEVSRTE-FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE------LVTSFEDHLLWHPDCNTNNIYITS 368 (474)
Q Consensus 298 WDv~tg~~~~~l~~h-~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~------ll~tl~gH~~~~~~~~v~svafSp 368 (474)
||+.+..|.+.+..+ ...+.+++.-|||..++.+. -|+.-+|++- +. .+..|..|... +..+-+||
T Consensus 151 WDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~-----il~C~lSP 225 (311)
T KOG0315|consen 151 WDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH-----ILRCLLSP 225 (311)
T ss_pred EEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce-----EEEEEECC
Confidence 999999988765543 35788999999999999998 8899999983 32 45678888876 57888999
Q ss_pred CCCEEEEEecCCCccccccCCCCeEEEEeCCCC-eEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccC
Q 011970 369 DQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALED 447 (474)
Q Consensus 369 Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 447 (474)
|+++||++|. |.|+|||++.+- +.-..|+||+. |
T Consensus 226 d~k~lat~ss-----------dktv~iwn~~~~~kle~~l~gh~r----------------------------------W 260 (311)
T KOG0315|consen 226 DVKYLATCSS-----------DKTVKIWNTDDFFKLELVLTGHQR----------------------------------W 260 (311)
T ss_pred CCcEEEeecC-----------CceEEEEecCCceeeEEEeecCCc----------------------------------e
Confidence 9999999875 999999998776 67788999996 9
Q ss_pred EEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 448 ITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 448 V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
||..+||.||++|+|||.|+++|||+.
T Consensus 261 vWdc~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 261 VWDCAFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred EEeeeeccCccEEEecCCCCceeeccc
Confidence 999999999999999999999999984
No 34
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.3e-34 Score=291.94 Aligned_cols=275 Identities=15% Similarity=0.133 Sum_probs=228.2
Q ss_pred CceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCC-CCccceeeeccccCceEEEEeCCCCeEEEEecCC
Q 011970 129 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP-DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 129 ~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~-~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
.-+|..|.|.|+|..|+++|..| ...||+. .. +..+.+. +|-..|..++++ +||..++||+.|
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SG----------EFtLWNg---~~fnFEtilQ--aHDs~Vr~m~ws-~~g~wmiSgD~g 159 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSG----------EFTLWNG---TSFNFETILQ--AHDSPVRTMKWS-HNGTWMISGDKG 159 (464)
T ss_pred ccceeeEEEcCCCceeEeecccc----------cEEEecC---ceeeHHHHhh--hhcccceeEEEc-cCCCEEEEcCCC
Confidence 45799999999999999987543 5557773 21 1111122 233456689998 799999999999
Q ss_pred CcEEEeecCCCe--EEEEEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCC
Q 011970 208 SIYKVFDLKNYT--MLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (474)
Q Consensus 208 ~tiKlWdl~tg~--~l~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~ 284 (474)
|.||+|+.+-.. ..+.-+.+.|+++|||| |.+++++ |+|++|||||..-.+.-..|.||.--|++|++.| .-+
T Consensus 160 G~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~---SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kg 235 (464)
T KOG0284|consen 160 GMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTC---SDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKG 235 (464)
T ss_pred ceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEe---cCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccc
Confidence 999999965322 22333357899999998 8888886 7799999999999998899999999999999985 466
Q ss_pred eEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCee
Q 011970 285 KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTN 362 (474)
Q Consensus 285 ~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~ 362 (474)
.++++|.|.+||+||.++|+|+.++.+|...|.++.|+|++++|+|+| |.++|+.|++ =+.+.++.+|..- |+
T Consensus 236 LiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd-----v~ 310 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD-----VT 310 (464)
T ss_pred eeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh-----he
Confidence 777789999999999999999999999999999999999999999999 9999999997 7788999999986 68
Q ss_pred EEEECCC-CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe-cCCCCCCCCccccCCCCCCcccccccccccccc
Q 011970 363 NIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRST 440 (474)
Q Consensus 363 svafSpD-g~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (474)
+++++|= -.++.||+. ||.|..|.+...+.+..+ .+|..
T Consensus 311 ~~~WhP~~~~lftsgg~-----------Dgsvvh~~v~~~~p~~~i~~AHd~---------------------------- 351 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGS-----------DGSVVHWVVGLEEPLGEIPPAHDG---------------------------- 351 (464)
T ss_pred eeccccccccceeeccC-----------CCceEEEeccccccccCCCccccc----------------------------
Confidence 9999995 566677654 999999999755665555 34553
Q ss_pred ccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 441 VGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 441 ~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.||+|+|+|=|++|+|||.|.++|.|.
T Consensus 352 ------~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 352 ------EIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ------ceeeeeccccceeEeecCCCcceeeec
Confidence 899999999999999999999999994
No 35
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1e-31 Score=270.96 Aligned_cols=357 Identities=13% Similarity=0.162 Sum_probs=266.0
Q ss_pred cCcchhhhhhhcccccccCCccccc--------chhhhhhccccc------ceee-cccCCCCCcccccccccccccEEE
Q 011970 29 DGFVNSVKKLQRREICSKRDRAFSI--------SNAQERFRNMHL------VEEY-DTHDPKGHCPFVLPFLMKRTKVIE 93 (474)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l------~~~~-~~~~~~~~~~~~~~~~~~~~~V~~ 93 (474)
.+..+-|.||-+-|=+....+.|-. ..-.|-.+.-++ .-|| ..+.+|... ..+-|...|-+
T Consensus 35 ~gLs~ivN~ll~se~~~~K~~pFDFLi~gelLRtsL~e~l~~kgiSsE~~leIEYv~~~~aP~pl----~~~~hdDWVSs 110 (423)
T KOG0313|consen 35 YGLSNIVNKLLKSENGFWKPVPFDFLIKGELLRTSLDEHLEEKGISSEEILEIEYVEAITAPKPL----QCFLHDDWVSS 110 (423)
T ss_pred ccHHHHHHHHHhccCCcCCCCcceEEEcceeeeccHHHHHHHcCcChhheeEEEEEEecCCCCcc----ccccchhhhhh
Confidence 4456778888888877666665521 222222222222 2233 334444432 22348889999
Q ss_pred EEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCE---EEEEEeecCCCccceeeeEEEEeEecc
Q 011970 94 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDS---LITVSVYASDNFSSLKCRSTKIEYIRR 170 (474)
Q Consensus 94 i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~---Lis~S~~~s~d~s~Lk~~~~~iw~i~~ 170 (474)
|..+++.|+++++||++++|+.. |+++.++.| |.++|.++++---++. ++++| .| +++++|-+..
T Consensus 111 v~~~~~~IltgsYDg~~riWd~~-Gk~~~~~~G-ht~~ik~v~~v~~n~~~~~fvsas----~D------qtl~Lw~~~~ 178 (423)
T KOG0313|consen 111 VKGASKWILTGSYDGTSRIWDLK-GKSIKTIVG-HTGPIKSVAWVIKNSSSCLFVSAS----MD------QTLRLWKWNV 178 (423)
T ss_pred hcccCceEEEeecCCeeEEEecC-CceEEEEec-CCcceeeeEEEecCCccceEEEec----CC------ceEEEEEecC
Confidence 99999999999999999999977 999999998 8899998888444444 77755 77 8999999988
Q ss_pred CCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCc
Q 011970 171 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHV 250 (474)
Q Consensus 171 G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~ 250 (474)
|..--....-..+|-..|.+|+-+ ++|..++|||.|.++|||+.++ ...-++..... +=....+. ++
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~-~sgtr~~SgS~D~~lkiWs~~~-~~~~~~E~~s~---~rrk~~~~--------~~ 245 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVD-SSGTRFCSGSWDTMLKIWSVET-DEEDELESSSN---RRRKKQKR--------EK 245 (423)
T ss_pred chhhhhHHhHhcccccceeEEEec-CCCCeEEeecccceeeecccCC-Cccccccccch---hhhhhhhh--------hh
Confidence 875221111111455677789886 7999999999999999999432 22222221100 00000000 11
Q ss_pred cEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEE
Q 011970 251 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLT 330 (474)
Q Consensus 251 tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS 330 (474)
. ..+++.+-++.||...|.+|.|.+ .+.+.++++|+|||.||+.+|.++.++.+. ....++..+|..+|||+
T Consensus 246 ~-----~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~ 317 (423)
T KOG0313|consen 246 E-----GGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLAS 317 (423)
T ss_pred c-----ccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeee
Confidence 1 136788999999999999999975 788889999999999999999998876654 47788999999999999
Q ss_pred Ec-CCcEEEEeCC---CcE-EEEeccCCCCcCCCCeeEEEECCCC-CEEEEEecCCCccccccCCCCeEEEEeCCCCe-E
Q 011970 331 FR-NRTVAVWNFR---GEL-VTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGK-C 403 (474)
Q Consensus 331 ~s-D~tIklWd~~---G~l-l~tl~gH~~~~~~~~v~svafSpDg-~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~-c 403 (474)
|+ |+.|+|||.+ |.. .++|.||.+| |.++.++|-. ..|+|+|. |+++||||+.+-+ .
T Consensus 318 gssdr~irl~DPR~~~gs~v~~s~~gH~nw-----Vssvkwsp~~~~~~~S~S~-----------D~t~klWDvRS~k~p 381 (423)
T KOG0313|consen 318 GSSDRHIRLWDPRTGDGSVVSQSLIGHKNW-----VSSVKWSPTNEFQLVSGSY-----------DNTVKLWDVRSTKAP 381 (423)
T ss_pred cCCCCceeecCCCCCCCceeEEeeecchhh-----hhheecCCCCceEEEEEec-----------CCeEEEEEeccCCCc
Confidence 99 9999999984 555 5699999999 6899999955 66788876 9999999999988 8
Q ss_pred EEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 404 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 404 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
|.+|.+|.+ .|.++.++ +|..|+||+.|++|++..
T Consensus 382 lydI~~h~D----------------------------------Kvl~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 382 LYDIAGHND----------------------------------KVLSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred ceeeccCCc----------------------------------eEEEEecc-CCceEEeccCcceEEEec
Confidence 999999986 89999998 566899999999999853
No 36
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=275.52 Aligned_cols=235 Identities=16% Similarity=0.281 Sum_probs=214.0
Q ss_pred ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCC
Q 011970 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG 260 (474)
Q Consensus 183 ~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG 260 (474)
+|++||.+|+|+ |-.+.+++||.|+||||||+++|++..|+.+ ..|.+|+||+-.-.+-+ ++.|+.||-||++..
T Consensus 149 gHlgWVr~vavd-P~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs--~gedk~VKCwDLe~n 225 (460)
T KOG0285|consen 149 GHLGWVRSVAVD-PGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFS--AGEDKQVKCWDLEYN 225 (460)
T ss_pred hccceEEEEeeC-CCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEE--ecCCCeeEEEechhh
Confidence 579999999998 5678999999999999999999999999985 58999999974433333 477999999999999
Q ss_pred eEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEE
Q 011970 261 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 339 (474)
Q Consensus 261 ~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklW 339 (474)
+.++.+-||++.|.+++.. |..+.|++++.|.++|+||+++...+.++.||...|.+|.|.|-.-.++|+| |.||+||
T Consensus 226 kvIR~YhGHlS~V~~L~lh-PTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlW 304 (460)
T KOG0285|consen 226 KVIRHYHGHLSGVYCLDLH-PTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLW 304 (460)
T ss_pred hhHHHhccccceeEEEecc-ccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEe
Confidence 9999999999999999987 5578889999999999999999999999999999999999998777788999 9999999
Q ss_pred eCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCcc
Q 011970 340 NFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD 418 (474)
Q Consensus 340 d~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~ 418 (474)
|+. |+-..++..|.-. |++++..|.-..+||+|. ..||-|++..|+.++.|.+|+.
T Consensus 305 Dl~agkt~~tlt~hkks-----vral~lhP~e~~fASas~------------dnik~w~~p~g~f~~nlsgh~~------ 361 (460)
T KOG0285|consen 305 DLRAGKTMITLTHHKKS-----VRALCLHPKENLFASASP------------DNIKQWKLPEGEFLQNLSGHNA------ 361 (460)
T ss_pred eeccCceeEeeecccce-----eeEEecCCchhhhhccCC------------ccceeccCCccchhhccccccc------
Confidence 995 9999999999876 799999999999999885 5699999999999999999996
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 419 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
-|.+|+-+.|| .+++|++.|++..||
T Consensus 362 ----------------------------iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 362 ----------------------------IINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred ----------------------------eeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 78999999998 689999999999998
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6e-32 Score=285.03 Aligned_cols=233 Identities=16% Similarity=0.224 Sum_probs=211.4
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEE
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVL 263 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L 263 (474)
.|.+|.|. |....+..+=..|.|.|||.+|.+++++++ +..|++.+|-+ -++++++ ++|..|++++..|++..
T Consensus 15 RVKsVd~H-PtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~G---sDD~~IrVfnynt~ekV 90 (794)
T KOG0276|consen 15 RVKSVDFH-PTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTG---SDDMQIRVFNYNTGEKV 90 (794)
T ss_pred ceeeeecC-CCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEe---cCCceEEEEecccceee
Confidence 34589998 678888888899999999999999999997 56899999996 6777776 66899999999999999
Q ss_pred EEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCC-ceEEeccccCCceEEEEEcC-CCcEEEEEc-CCcEEEEe
Q 011970 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWN 340 (474)
Q Consensus 264 ~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg-~~~~~l~~h~~~v~sv~Fsp-dg~llaS~s-D~tIklWd 340 (474)
++|+.|.+-+++++..| ..-++|++|+|-+||+||.+.+ .|.+++.||...|..++|.| |...|||+| |+|||||.
T Consensus 91 ~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWs 169 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWS 169 (794)
T ss_pred EEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEE
Confidence 99999999999999884 4678999999999999998864 58899999999999999996 889999999 99999999
Q ss_pred C-CCcEEEEeccCCCCcCCCCeeEEEECCCC--CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCc
Q 011970 341 F-RGELVTSFEDHLLWHPDCNTNNIYITSDQ--DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 417 (474)
Q Consensus 341 ~-~G~ll~tl~gH~~~~~~~~v~svafSpDg--~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~ 417 (474)
+ +-.+..||+||..- ||.|.+-|-| -+|+||+. |.+|||||.+|.+|++||+||..
T Consensus 170 lgs~~~nfTl~gHekG-----VN~Vdyy~~gdkpylIsgaD-----------D~tiKvWDyQtk~CV~TLeGHt~----- 228 (794)
T KOG0276|consen 170 LGSPHPNFTLEGHEKG-----VNCVDYYTGGDKPYLISGAD-----------DLTIKVWDYQTKSCVQTLEGHTN----- 228 (794)
T ss_pred cCCCCCceeeeccccC-----cceEEeccCCCcceEEecCC-----------CceEEEeecchHHHHHHhhcccc-----
Confidence 9 58899999999986 7889887755 59999987 99999999999999999999996
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 418 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|..+.|+|.=.+|+|||+|||||||.+
T Consensus 229 -----------------------------Nvs~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 229 -----------------------------NVSFVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred -----------------------------cceEEEecCCCcEEEEecCCccEEEecC
Confidence 8999999999999999999999999974
No 38
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=3.5e-32 Score=280.61 Aligned_cols=288 Identities=15% Similarity=0.191 Sum_probs=245.5
Q ss_pred cceeeEeecCCCceEEEEEEee-CCCEEEEEEeecCCCccceeeeEEEEeEecc-CCCCCccceeeeccccCceEEEEeC
Q 011970 118 NRRICFLNVSPDEVIRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDD 195 (474)
Q Consensus 118 g~~l~~l~g~~~~~i~sv~fsp-dg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~-G~~~~~~~lf~~~~~~~~~~V~Fs~ 195 (474)
-+.++++.| |...|.++-|.| .+.+|.|++ -| ..++||++.. |+|..++.. |...|..+.|+
T Consensus 204 kk~~~~~~g-H~kgvsai~~fp~~~hLlLS~g----mD------~~vklW~vy~~~~~lrtf~g----H~k~Vrd~~~s- 267 (503)
T KOG0282|consen 204 KKLSHNLSG-HTKGVSAIQWFPKKGHLLLSGG----MD------GLVKLWNVYDDRRCLRTFKG----HRKPVRDASFN- 267 (503)
T ss_pred HhheeeccC-CccccchhhhccceeeEEEecC----CC------ceEEEEEEecCcceehhhhc----chhhhhhhhcc-
Confidence 466888997 778899999999 899998854 66 7999999965 888665432 44566789998
Q ss_pred CCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCC--ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcc
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPG--IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR 272 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg--~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~ 272 (474)
.+|..+.|+|.|+++|+||++||+|+..++ +..+..|+|.|+ .+++++ ..|+.|+.||+++|+++++...|++.
T Consensus 268 ~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G---~sd~ki~~wDiRs~kvvqeYd~hLg~ 344 (503)
T KOG0282|consen 268 NCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVG---GSDKKIRQWDIRSGKVVQEYDRHLGA 344 (503)
T ss_pred ccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEe---cCCCcEEEEeccchHHHHHHHhhhhh
Confidence 799999999999999999999999999998 567889999983 466665 55899999999999999999999999
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe-ccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC----CcEE
Q 011970 273 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR----GELV 346 (474)
Q Consensus 273 v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~-l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~----G~ll 346 (474)
+.++.|. ++|.+.+++++|++++||+.+.+-.++. ...+..+..++...|++..++.=+ |+.|-+..+. -...
T Consensus 345 i~~i~F~-~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkk 423 (503)
T KOG0282|consen 345 ILDITFV-DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKK 423 (503)
T ss_pred eeeeEEc-cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHh
Confidence 9999998 6789999999999999999999887754 333444556788899999999999 9999998863 3345
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCC
Q 011970 347 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTG 426 (474)
Q Consensus 347 ~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~ 426 (474)
..|+||... ++. -.|.|||||.+|+||+. ||.+.+||..|-+.+.+|++|+.
T Consensus 424 K~feGh~va--Gys-~~v~fSpDG~~l~SGds-----------dG~v~~wdwkt~kl~~~lkah~~-------------- 475 (503)
T KOG0282|consen 424 KRFEGHSVA--GYS-CQVDFSPDGRTLCSGDS-----------DGKVNFWDWKTTKLVSKLKAHDQ-------------- 475 (503)
T ss_pred hhhcceecc--Cce-eeEEEcCCCCeEEeecC-----------CccEEEeechhhhhhhccccCCc--------------
Confidence 689999754 444 46999999999999976 99999999999999999999974
Q ss_pred ccccccccccccccccccccCEEEEEEcCCC-CEEEEEcCCCcEEEcc
Q 011970 427 KSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWS 473 (474)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~V~slafSpDg-~~LaSgs~DgtVklWd 473 (474)
.+..+.|+|-- ..+||++.||.||+|+
T Consensus 476 --------------------~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 476 --------------------PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred --------------------ceEEEEecCCCcceeEecccCceeEecC
Confidence 89999999976 4699999999999997
No 39
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.98 E-value=4.5e-29 Score=241.12 Aligned_cols=277 Identities=14% Similarity=0.181 Sum_probs=208.2
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~ 177 (474)
++++++++.|+++++||..+|+++.++++ + ..+++++|+|||+.|+.++ ..+ ..+++|++.+|+....
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~-~-~~~~~l~~~~dg~~l~~~~---~~~------~~v~~~d~~~~~~~~~- 68 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPV-G-QRPRGITLSKDGKLLYVCA---SDS------DTIQVIDLATGEVIGT- 68 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEEC-C-CCCCceEECCCCCEEEEEE---CCC------CeEEEEECCCCcEEEe-
Confidence 46788999999999999999999999986 4 3378999999999875432 244 5899999988886332
Q ss_pred ceeeeccccCceEEEEeCCCCeEE-EEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc-eEEEEecCCCCccEEE
Q 011970 178 ALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGI-MLLIFNRSSSHVPLKI 254 (474)
Q Consensus 178 ~lf~~~~~~~~~~V~Fs~~nGk~L-aS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~-~la~~s~~s~D~tIkL 254 (474)
+... ..+..++|+ |+|+.| ++++.|+++++||+.+++++..+. +..+.+++|+|++ ++++++ .....+.+
T Consensus 69 --~~~~--~~~~~~~~~-~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~--~~~~~~~~ 141 (300)
T TIGR03866 69 --LPSG--PDPELFALH-PNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTS--ETTNMAHF 141 (300)
T ss_pred --ccCC--CCccEEEEC-CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEe--cCCCeEEE
Confidence 2211 124478998 788866 455679999999999999888886 4567899999855 555442 22345788
Q ss_pred EecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCceEEecccc-------CCceEEEEEcCCCc
Q 011970 255 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTE-------FMTPSAFIFLYENQ 326 (474)
Q Consensus 255 Wdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~~~~~l~~h-------~~~v~sv~Fspdg~ 326 (474)
||.++++++..+... .....++|+ ++++.+++++ .|++|++||+++++++..+..+ ...+..++|+|||+
T Consensus 142 ~d~~~~~~~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~ 219 (300)
T TIGR03866 142 IDTKTYEIVDNVLVD-QRPRFAEFT-ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGK 219 (300)
T ss_pred EeCCCCeEEEEEEcC-CCccEEEEC-CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCC
Confidence 999999988766432 345678886 6677776654 6999999999999987654322 12345788999999
Q ss_pred EEEE-Ec-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 327 LFLT-FR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 327 llaS-~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
.++. .. +++|.+||.+ ++++..+..+ .. +..++|+|||++|++++. .+++|++||+.++++
T Consensus 220 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~-----~~~~~~~~~g~~l~~~~~----------~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 220 TAFVALGPANRVAVVDAKTYEVLDYLLVG-QR-----VWQLAFTPDEKYLLTTNG----------VSNDVSVIDVAALKV 283 (300)
T ss_pred EEEEEcCCCCeEEEEECCCCcEEEEEEeC-CC-----cceEEECCCCCEEEEEcC----------CCCeEEEEECCCCcE
Confidence 8544 34 7789999995 8887765422 22 578999999999998642 389999999999999
Q ss_pred EEEecCCC
Q 011970 404 LAKINATN 411 (474)
Q Consensus 404 l~tl~gH~ 411 (474)
+++++...
T Consensus 284 ~~~~~~~~ 291 (300)
T TIGR03866 284 IKSIKVGR 291 (300)
T ss_pred EEEEEccc
Confidence 99997654
No 40
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=8.1e-31 Score=276.54 Aligned_cols=276 Identities=14% Similarity=0.171 Sum_probs=232.7
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC
Q 011970 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 128 ~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
+.+.|.||-|.|----++.+ - .+ .++.||+-.+....+. |+-. -..+++..|- +--+.++.||.|
T Consensus 12 rSdRVKsVd~HPtePw~la~-L---yn------G~V~IWnyetqtmVks---feV~-~~PvRa~kfi-aRknWiv~GsDD 76 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAA-L---YN------GDVQIWNYETQTMVKS---FEVS-EVPVRAAKFI-ARKNWIVTGSDD 76 (794)
T ss_pred cCCceeeeecCCCCceEEEe-e---ec------CeeEEEecccceeeee---eeec-ccchhhheee-eccceEEEecCC
Confidence 66889999999988866653 3 33 7889999877766543 3321 1234566775 456689999999
Q ss_pred CcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCC-eEEEEEeecCcceeEEEEEecCC
Q 011970 208 SIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG-TVLKVFYHLLHRNKKVDFIEQFN 283 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG-~~L~tl~~h~~~v~~V~F~~~~~ 283 (474)
..|||++.+|++.+++++ .+.|++|+.+| .-.++++ |+|.+||+||-+.+ .|.++|+||.|-|..|+|.|-|+
T Consensus 77 ~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLts---SDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ 153 (794)
T KOG0276|consen 77 MQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTS---SDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP 153 (794)
T ss_pred ceEEEEecccceeeEEeeccccceeeeeecCCCCeEEec---CCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc
Confidence 999999999999999987 46899999999 4455544 66999999999865 68899999999999999999999
Q ss_pred CeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEc--CCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCC
Q 011970 284 EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFL--YENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 359 (474)
Q Consensus 284 ~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fs--pdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~ 359 (474)
.++++++-|+|||+|.+.+..+.-+|.||...|..|.|- +|..+|+||+ |.||||||.+ -.|++||+||..-
T Consensus 154 ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N---- 229 (794)
T KOG0276|consen 154 NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN---- 229 (794)
T ss_pred cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc----
Confidence 999999999999999999999999999999999999987 4668999999 9999999996 8899999999974
Q ss_pred CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccc
Q 011970 360 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS 439 (474)
Q Consensus 360 ~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (474)
|+.++|+|.=-+|+|||. |||+|||+-.|=+...+|+
T Consensus 230 -vs~v~fhp~lpiiisgsE-----------DGTvriWhs~Ty~lE~tLn------------------------------- 266 (794)
T KOG0276|consen 230 -VSFVFFHPELPIIISGSE-----------DGTVRIWNSKTYKLEKTLN------------------------------- 266 (794)
T ss_pred -ceEEEecCCCcEEEEecC-----------CccEEEecCcceehhhhhh-------------------------------
Confidence 899999999999999876 9999999987766555542
Q ss_pred cccccccCEEEEEEcCCCCEEEEEcCCCcEEE
Q 011970 440 TVGEALEDITSLFYDEERNEIYTGNRHGLVHV 471 (474)
Q Consensus 440 ~~~~~l~~V~slafSpDg~~LaSgs~DgtVkl 471 (474)
..++.||+++-.+.+..++.|...|.|-+
T Consensus 267 ---~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 267 ---YGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ---cCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 33458999999999999999998887643
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=8.1e-31 Score=284.16 Aligned_cols=273 Identities=16% Similarity=0.186 Sum_probs=233.9
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC
Q 011970 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 128 ~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
....|.+|+|.|.---|+++ |.-..|.+||-+-|.++.. |. +|-+.|..|.|. |.+.+.+||+.|
T Consensus 8 kSsRvKglsFHP~rPwILts----------lHsG~IQlWDYRM~tli~r---Fd-eHdGpVRgv~FH-~~qplFVSGGDD 72 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTS----------LHSGVIQLWDYRMGTLIDR---FD-EHDGPVRGVDFH-PTQPLFVSGGDD 72 (1202)
T ss_pred ccccccceecCCCCCEEEEe----------ecCceeeeehhhhhhHHhh---hh-ccCCccceeeec-CCCCeEEecCCc
Confidence 34678999999998877763 3337999999999998653 43 366778899998 799999999999
Q ss_pred CcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCC
Q 011970 208 SIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~ 284 (474)
.+||||+.++-+|++||.+ +.|+.+.|++ =-+++++ |+|+||+|||.++++|+.++.||.|.|.+.+|. |..+
T Consensus 73 ykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSA---SDDQTIrIWNwqsr~~iavltGHnHYVMcAqFh-ptED 148 (1202)
T KOG0292|consen 73 YKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSA---SDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH-PTED 148 (1202)
T ss_pred cEEEEEecccceehhhhccccceeEEeeccCCCceEEEc---cCCCeEEEEeccCCceEEEEecCceEEEeeccC-Cccc
Confidence 9999999999999999975 5899999997 4577664 779999999999999999999999999999998 4567
Q ss_pred eEEEEeCCCcEEEEECCC--------C-------------------ce--EEeccccCCceEEEEEcCCCcEEEEEc-CC
Q 011970 285 KLLVKQENENLQILDVRN--------A-------------------EL--MEVSRTEFMTPSAFIFLYENQLFLTFR-NR 334 (474)
Q Consensus 285 ~ll~~~~D~tIkIWDv~t--------g-------------------~~--~~~l~~h~~~v~sv~Fspdg~llaS~s-D~ 334 (474)
.++++|-|.|||+||+.. | .+ ..++.||.-.|.-++|.|--.+++||+ |+
T Consensus 149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDR 228 (1202)
T KOG0292|consen 149 LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDR 228 (1202)
T ss_pred eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcc
Confidence 888899999999999863 2 11 246899999999999999999999999 99
Q ss_pred cEEEEeCC-Cc--EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 335 TVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 335 tIklWd~~-G~--ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
.||+|..+ -+ .+-|..||.+- |.++-|.|.+++|+|.|. |++||+||+...+++++++--+
T Consensus 229 qVKlWrmnetKaWEvDtcrgH~nn-----Vssvlfhp~q~lIlSnsE-----------DksirVwDm~kRt~v~tfrren 292 (1202)
T KOG0292|consen 229 QVKLWRMNETKAWEVDTCRGHYNN-----VSSVLFHPHQDLILSNSE-----------DKSIRVWDMTKRTSVQTFRREN 292 (1202)
T ss_pred eeeEEEeccccceeehhhhcccCC-----cceEEecCccceeEecCC-----------CccEEEEecccccceeeeeccC
Confidence 99999995 33 57799999985 789999999999999765 9999999999999999997554
Q ss_pred CCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcE
Q 011970 412 CSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 469 (474)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtV 469 (474)
+ .-|-|+-+|..+.+|.|=..|.+
T Consensus 293 d----------------------------------RFW~laahP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 293 D----------------------------------RFWILAAHPELNLFAAGHDSGMI 316 (1202)
T ss_pred C----------------------------------eEEEEEecCCcceeeeecCCceE
Confidence 3 78889999999988777655543
No 42
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.7e-29 Score=262.68 Aligned_cols=303 Identities=11% Similarity=0.079 Sum_probs=241.4
Q ss_pred cEEEEeeCCCeEEeeeccccceee---EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCC
Q 011970 99 DIVFALAHSGVCAAFSRETNRRIC---FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 175 (474)
Q Consensus 99 ~~las~s~dgtiklW~~~tg~~l~---~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~ 175 (474)
-.++++++|+++.+|+ |-+.+ ++. .|...|++|.|||||...||++.| +++-|+|=.+|+...
T Consensus 161 fRi~T~sdDn~v~ffe---GPPFKFk~s~r-~HskFV~~VRysPDG~~Fat~gsD----------gki~iyDGktge~vg 226 (603)
T KOG0318|consen 161 FRIATGSDDNTVAFFE---GPPFKFKSSFR-EHSKFVNCVRYSPDGSRFATAGSD----------GKIYIYDGKTGEKVG 226 (603)
T ss_pred eEEEeccCCCeEEEee---CCCeeeeeccc-ccccceeeEEECCCCCeEEEecCC----------ccEEEEcCCCccEEE
Confidence 5799999999999997 55444 455 477899999999999999998743 488888888888633
Q ss_pred ccceeee--ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCc----EEEEEEcCCceEEEEecCCC
Q 011970 176 GFALFES--ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKH----VQEIKISPGIMLLIFNRSSS 248 (474)
Q Consensus 176 ~~~lf~~--~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~----V~~vafSpg~~la~~s~~s~ 248 (474)
. ++. .|.+.+.+|+++ ||++.++++|.|.|+||||+.+.++..++. +.. --.+.+- ...|++-+ -
T Consensus 227 ~---l~~~~aHkGsIfalsWs-PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-kd~lItVS---l 298 (603)
T KOG0318|consen 227 E---LEDSDAHKGSIFALSWS-PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-KDHLITVS---L 298 (603)
T ss_pred E---ecCCCCccccEEEEEEC-CCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-CCeEEEEE---c
Confidence 2 321 367778899998 899999999999999999999999999986 222 2233333 55555553 3
Q ss_pred CccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe--------------------
Q 011970 249 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-------------------- 308 (474)
Q Consensus 249 D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~-------------------- 308 (474)
+++|-+.+..++..++++.||...|.++..+ +++.+|++++.||.|-=||..+|.+-+.
T Consensus 299 ~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~-~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~ 377 (603)
T KOG0318|consen 299 SGTINYLNPSDPSVLKVISGHNKSITALTVS-PDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGEL 377 (603)
T ss_pred CcEEEEecccCCChhheecccccceeEEEEc-CCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcE
Confidence 5899999999999999999999999999976 6788999999999999999887642211
Q ss_pred -----------------------------------------------------ccccC--------CceEEEEEcCCCcE
Q 011970 309 -----------------------------------------------------SRTEF--------MTPSAFIFLYENQL 327 (474)
Q Consensus 309 -----------------------------------------------------l~~h~--------~~v~sv~Fspdg~l 327 (474)
|+.+. -.+.++|++||++.
T Consensus 378 ~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~ 457 (603)
T KOG0318|consen 378 FTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSE 457 (603)
T ss_pred EEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCE
Confidence 00000 13457778999999
Q ss_pred EEEEc-CCcEEEEeCCC-cEE--EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 328 FLTFR-NRTVAVWNFRG-ELV--TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 328 laS~s-D~tIklWd~~G-~ll--~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
+|.|. |+.|.|+.+.| +++ ..++.|... +..|+|||||.+||++.. .+.|-+||+.+.+.
T Consensus 458 vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~-----iT~vaySpd~~yla~~Da-----------~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 458 VAVGGQDGKVHVYSLSGDELKEEAKLLEHRAA-----ITDVAYSPDGAYLAAGDA-----------SRKVVLYDVASREV 521 (603)
T ss_pred EEEecccceEEEEEecCCcccceeeeecccCC-----ceEEEECCCCcEEEEecc-----------CCcEEEEEcccCce
Confidence 99999 99999999975 533 356788886 689999999999999865 78899999999887
Q ss_pred EEEecC-CCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 404 LAKINA-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 404 l~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
...--+ |+. .|.+|+||||.+++||||-|-.|.+|++
T Consensus 522 ~~~~w~FHta----------------------------------kI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 522 KTNRWAFHTA----------------------------------KINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred ecceeeeeee----------------------------------eEEEEEeCCCceEEEeccccceEEEEEc
Confidence 333333 664 8999999999999999999999999974
No 43
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.4e-31 Score=265.77 Aligned_cols=290 Identities=17% Similarity=0.217 Sum_probs=240.0
Q ss_pred eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccc-----eeeeccccCceEEEEeC
Q 011970 121 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA-----LFESESLKWPGFVEFDD 195 (474)
Q Consensus 121 l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~-----lf~~~~~~~~~~V~Fs~ 195 (474)
-+++..+...-+.+..|||||++|+|+|+|| -+.+|+.-+||+.+..+ -|-. .-..+.++.||
T Consensus 205 ~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDG----------FiEVWny~~GKlrKDLkYQAqd~fMM-md~aVlci~FS- 272 (508)
T KOG0275|consen 205 ARSIKFGQKSHVECARFSPDGQYLVSGSVDG----------FIEVWNYTTGKLRKDLKYQAQDNFMM-MDDAVLCISFS- 272 (508)
T ss_pred hhheecccccchhheeeCCCCceEeeccccc----------eeeeehhccchhhhhhhhhhhcceee-cccceEEEeec-
Confidence 3444445555588999999999999977554 78899999999843222 2221 12346689998
Q ss_pred CCCeEEEEecCCCcEEEeecCCCeEEEEEc---CCcEEEEEEc-CCceEEEEecCCCCccEEEEecCCCeEEEEEeecCc
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH 271 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~---~~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~ 271 (474)
.|...||+|++||.||||.+.||.|+..+. ...|.++.|| ++..++++ +.|.|+||--+..|+||+.|+||..
T Consensus 273 RDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~---sfD~tvRiHGlKSGK~LKEfrGHsS 349 (508)
T KOG0275|consen 273 RDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSA---SFDQTVRIHGLKSGKCLKEFRGHSS 349 (508)
T ss_pred ccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcc---cccceEEEeccccchhHHHhcCccc
Confidence 799999999999999999999999999885 4689999999 67777765 7799999999999999999999999
Q ss_pred ceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc--ccCCceEEEEEcCC-CcEEEEEc-CCcEEEEeCCCcEEE
Q 011970 272 RNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR--TEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNFRGELVT 347 (474)
Q Consensus 272 ~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~--~h~~~v~sv~Fspd-g~llaS~s-D~tIklWd~~G~ll~ 347 (474)
-|..+.|. ++|..+++++.|+|||+|+..+++|+.+++ +..-.|.++...|- -..++... .+||-|-+++|+.++
T Consensus 350 yvn~a~ft-~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVr 428 (508)
T KOG0275|consen 350 YVNEATFT-DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVR 428 (508)
T ss_pred cccceEEc-CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEe
Confidence 99999997 789999999999999999999999999865 35568888886654 34555565 889999999999999
Q ss_pred EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCc
Q 011970 348 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 427 (474)
Q Consensus 348 tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~ 427 (474)
+|..-.-- ....-+.+.||-|.+|-+.+ +|+.+.-+++.+|++-++|.-|..
T Consensus 429 sfsSGkRE--gGdFi~~~lSpkGewiYcig-----------ED~vlYCF~~~sG~LE~tl~VhEk--------------- 480 (508)
T KOG0275|consen 429 SFSSGKRE--GGDFINAILSPKGEWIYCIG-----------EDGVLYCFSVLSGKLERTLPVHEK--------------- 480 (508)
T ss_pred eeccCCcc--CCceEEEEecCCCcEEEEEc-----------cCcEEEEEEeecCceeeeeecccc---------------
Confidence 99732211 01134677999999998764 499999999999999999999985
Q ss_pred cccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 428 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|-.++-+|..+.|||=++||++|||.
T Consensus 481 -------------------dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 -------------------DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred -------------------cccccccCcccchhhhhcccchhhhcC
Confidence 788899999999999999999999995
No 44
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.1e-31 Score=266.55 Aligned_cols=289 Identities=12% Similarity=0.183 Sum_probs=235.7
Q ss_pred cceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEe-ccCCCCCccce-eee-ccccCceEEEEe
Q 011970 118 NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI-RRGKPDSGFAL-FES-ESLKWPGFVEFD 194 (474)
Q Consensus 118 g~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i-~~G~~~~~~~l-f~~-~~~~~~~~V~Fs 194 (474)
-+..+.|+- |.+-||=+.||+||++|||+| .| .++-||.+ ..+++ .| ++. +|...|-++.||
T Consensus 214 ~qt~qil~~-htdEVWfl~FS~nGkyLAsaS----kD------~Taiiw~v~~d~~~----kl~~tlvgh~~~V~yi~wS 278 (519)
T KOG0293|consen 214 SQTWQILQD-HTDEVWFLQFSHNGKYLASAS----KD------STAIIWIVVYDVHF----KLKKTLVGHSQPVSYIMWS 278 (519)
T ss_pred chhhhhHhh-CCCcEEEEEEcCCCeeEeecc----CC------ceEEEEEEecCcce----eeeeeeecccCceEEEEEC
Confidence 344456775 667799999999999999976 44 57788987 34442 22 222 355567789998
Q ss_pred CCCCeEEEEecCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeec-C
Q 011970 195 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL-L 270 (474)
Q Consensus 195 ~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~---~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h-~ 270 (474)
||.++|++|+.|..+++||+.+|.+.+..+ +..+.++++.|++.-.+. ++.|++|-.||+ +|..+..-++- .
T Consensus 279 -PDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~--Gs~dr~i~~wdl-Dgn~~~~W~gvr~ 354 (519)
T KOG0293|consen 279 -PDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVT--GSPDRTIIMWDL-DGNILGNWEGVRD 354 (519)
T ss_pred -CCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEe--cCCCCcEEEecC-Ccchhhccccccc
Confidence 788999999999999999999999987775 357999999986554444 356899999997 78988887753 3
Q ss_pred cceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEE
Q 011970 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS 348 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~t 348 (474)
..|..++.. +||+++++...|..|+|++.++..++.....| ..+.++..|-||++++..= +++|.+||++ ..+++.
T Consensus 355 ~~v~dlait-~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k 432 (519)
T KOG0293|consen 355 PKVHDLAIT-YDGKYVLLVTVDKKIRLYNREARVDRGLISEE-QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRK 432 (519)
T ss_pred ceeEEEEEc-CCCcEEEEEecccceeeechhhhhhhcccccc-CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHH
Confidence 567888865 78999999999999999999998887654434 5799999999999999876 9999999995 889999
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcc
Q 011970 349 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 428 (474)
Q Consensus 349 l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~ 428 (474)
+.||...+. .+.++.=--|.++|||||. |+.|+||+-.+|+.+++|.||..
T Consensus 433 Y~Ghkq~~f--iIrSCFgg~~~~fiaSGSE-----------D~kvyIWhr~sgkll~~LsGHs~---------------- 483 (519)
T KOG0293|consen 433 YFGHKQGHF--IIRSCFGGGNDKFIASGSE-----------DSKVYIWHRISGKLLAVLSGHSK---------------- 483 (519)
T ss_pred hhcccccce--EEEeccCCCCcceEEecCC-----------CceEEEEEccCCceeEeecCCcc----------------
Confidence 999998653 3555555557799999876 99999999999999999999995
Q ss_pred ccccccccccccccccccCEEEEEEcCCC-CEEEEEcCCCcEEEccC
Q 011970 429 KKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 429 ~~~~~~~~~~~~~~~~l~~V~slafSpDg-~~LaSgs~DgtVklWd~ 474 (474)
.|..|+++|.. .++||||.|||||+|.+
T Consensus 484 ------------------~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 484 ------------------TVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred ------------------eeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 89999999976 46999999999999964
No 45
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1e-29 Score=255.50 Aligned_cols=322 Identities=10% Similarity=0.092 Sum_probs=258.3
Q ss_pred eeecccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEE
Q 011970 67 EEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLIT 146 (474)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis 146 (474)
..|+.|..+.+++.+.|. ...+|+|+.|-...||++.+|..++.|.| |.+.|.++.||-||.+|||
T Consensus 58 ~tF~~H~~svFavsl~P~-------------~~l~aTGGgDD~AflW~~~~ge~~~eltg-HKDSVt~~~FshdgtlLAT 123 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPN-------------NNLVATGGGDDLAFLWDISTGEFAGELTG-HKDSVTCCSFSHDGTLLAT 123 (399)
T ss_pred eehhhcCCceEEEEeCCC-------------CceEEecCCCceEEEEEccCCcceeEecC-CCCceEEEEEccCceEEEe
Confidence 346666666666666665 78999999999999999999999999998 7788999999999999999
Q ss_pred EEeecCCCccceeeeEEEEeEeccCCCCCccceeee-ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc
Q 011970 147 VSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 225 (474)
Q Consensus 147 ~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~ 225 (474)
+. -+ ..++||...+|..-. ++++. +.+. -+.+. |-+.+|+.|+.||.+-.|.+.++...+.++
T Consensus 124 Gd----ms------G~v~v~~~stg~~~~--~~~~e~~die---Wl~WH-p~a~illAG~~DGsvWmw~ip~~~~~kv~~ 187 (399)
T KOG0296|consen 124 GD----MS------GKVLVFKVSTGGEQW--KLDQEVEDIE---WLKWH-PRAHILLAGSTDGSVWMWQIPSQALCKVMS 187 (399)
T ss_pred cC----CC------ccEEEEEcccCceEE--EeecccCceE---EEEec-ccccEEEeecCCCcEEEEECCCcceeeEec
Confidence 54 44 688999999888522 34432 2344 48887 799999999999999999999866666665
Q ss_pred --CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecC-cceeEEEEEecCCCeEEEEeCCCcEEEEECC
Q 011970 226 --DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL-HRNKKVDFIEQFNEKLLVKQENENLQILDVR 301 (474)
Q Consensus 226 --~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~-~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~ 301 (474)
...+..=.|.| |.++++. ..|++|++||..||+++.++.+.. .....+++. ..+..++.++.|+.+.+-+..
T Consensus 188 Gh~~~ct~G~f~pdGKr~~tg---y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~-~~~~~~~~g~~e~~~~~~~~~ 263 (399)
T KOG0296|consen 188 GHNSPCTCGEFIPDGKRILTG---YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLN-LAGSTLTKGNSEGVACGVNNG 263 (399)
T ss_pred CCCCCcccccccCCCceEEEE---ecCceEEEEecCCCceeEEecccccCcCCccccc-cccceeEeccCCccEEEEccc
Confidence 45788889997 5566655 448999999999999999887322 233556665 345666677899999999999
Q ss_pred CCceEEecc--------ccCC---ceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCC
Q 011970 302 NAELMEVSR--------TEFM---TPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSD 369 (474)
Q Consensus 302 tg~~~~~l~--------~h~~---~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpD 369 (474)
+|+-+..++ .|.. .|.++.||..=.|+|+|+ ||+|.|||+.-.-++..--|... |..+-|-+
T Consensus 264 sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~-----V~~l~w~~- 337 (399)
T KOG0296|consen 264 SGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG-----VTKLKWLN- 337 (399)
T ss_pred cceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCc-----eEEEEEcC-
Confidence 998776655 3443 344555677888999999 99999999964444444446665 67899988
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEE
Q 011970 370 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDIT 449 (474)
Q Consensus 370 g~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~ 449 (474)
-.+|+++|. +|+||+||..||+|+.++.||+. .|.
T Consensus 338 t~~l~t~c~-----------~g~v~~wDaRtG~l~~~y~GH~~----------------------------------~Il 372 (399)
T KOG0296|consen 338 TDYLLTACA-----------NGKVRQWDARTGQLKFTYTGHQM----------------------------------GIL 372 (399)
T ss_pred cchheeecc-----------CceEEeeeccccceEEEEecCch----------------------------------hee
Confidence 688888886 99999999999999999999996 899
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 450 SLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 450 slafSpDg~~LaSgs~DgtVklWd 473 (474)
..+++||++.++|+|.|++.+|.+
T Consensus 373 ~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred EEEEcCCCcEEEEecCCCeEEEEe
Confidence 999999999999999999999875
No 46
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.2e-31 Score=286.39 Aligned_cols=240 Identities=15% Similarity=0.218 Sum_probs=210.2
Q ss_pred eeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEec
Q 011970 180 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSI 257 (474)
Q Consensus 180 f~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi 257 (474)
|+.. ...+..++|. |.-..+.++=..|.|++||..-|+|+..+- ++.|+.|+|+|.+-|.++ +++|..||+|+.
T Consensus 5 fEsk-SsRvKglsFH-P~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVS--GGDDykIkVWnY 80 (1202)
T KOG0292|consen 5 FESK-SSRVKGLSFH-PKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVS--GGDDYKIKVWNY 80 (1202)
T ss_pred hhcc-cccccceecC-CCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEe--cCCccEEEEEec
Confidence 5543 2335589998 788889999999999999999999998874 679999999996665555 477999999999
Q ss_pred CCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcE
Q 011970 258 EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 336 (474)
Q Consensus 258 ~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tI 336 (474)
.+.+||.||.||.+.|+.+.|.. .=--|+++|+|.||||||.++++|+.++.||...|.+..|.|--.+++|+| |+||
T Consensus 81 k~rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTV 159 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTV 159 (1202)
T ss_pred ccceehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceE
Confidence 99999999999999999999973 345789999999999999999999999999999999999999999999999 9999
Q ss_pred EEEeCCC----------------------------cE--EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccc
Q 011970 337 AVWNFRG----------------------------EL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWM 386 (474)
Q Consensus 337 klWd~~G----------------------------~l--l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~ 386 (474)
||||+.| .+ ...|+||.-- ||-++|.|.--+|+||+.
T Consensus 160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG-----VNwaAfhpTlpliVSG~D-------- 226 (1202)
T KOG0292|consen 160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG-----VNWAAFHPTLPLIVSGAD-------- 226 (1202)
T ss_pred EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc-----cceEEecCCcceEEecCC--------
Confidence 9999543 11 2478899865 799999999999999987
Q ss_pred cCCCCeEEEEeCCCCe--EEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEc
Q 011970 387 EGSAGSINVSSILTGK--CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 464 (474)
Q Consensus 387 ~s~DgtIklWdi~tG~--cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs 464 (474)
|..||||-...-+ .+-|.+||.+ .|++|.|+|.-..|.|.|
T Consensus 227 ---DRqVKlWrmnetKaWEvDtcrgH~n----------------------------------nVssvlfhp~q~lIlSns 269 (1202)
T KOG0292|consen 227 ---DRQVKLWRMNETKAWEVDTCRGHYN----------------------------------NVSSVLFHPHQDLILSNS 269 (1202)
T ss_pred ---cceeeEEEeccccceeehhhhcccC----------------------------------CcceEEecCccceeEecC
Confidence 9999999986554 3678899997 899999999999999999
Q ss_pred CCCcEEEccC
Q 011970 465 RHGLVHVWSN 474 (474)
Q Consensus 465 ~DgtVklWd~ 474 (474)
+|++|||||+
T Consensus 270 EDksirVwDm 279 (1202)
T KOG0292|consen 270 EDKSIRVWDM 279 (1202)
T ss_pred CCccEEEEec
Confidence 9999999996
No 47
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=2.5e-30 Score=251.80 Aligned_cols=292 Identities=15% Similarity=0.200 Sum_probs=230.1
Q ss_pred eecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEE
Q 011970 124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY 203 (474)
Q Consensus 124 l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS 203 (474)
|+| |+.++.-|-||.+|+.|.|++ .| .++.+|+-.+|+.+.+. . +|.+.|+++..+ -+.+.|++
T Consensus 6 l~G-HERplTqiKyN~eGDLlFsca----KD------~~~~vw~s~nGerlGty---~-GHtGavW~~Did-~~s~~liT 69 (327)
T KOG0643|consen 6 LQG-HERPLTQIKYNREGDLLFSCA----KD------STPTVWYSLNGERLGTY---D-GHTGAVWCCDID-WDSKHLIT 69 (327)
T ss_pred ccc-CccccceEEecCCCcEEEEec----CC------CCceEEEecCCceeeee---c-CCCceEEEEEec-CCcceeee
Confidence 576 889999999999999999987 44 68889998899975431 1 467788899987 68899999
Q ss_pred ecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecC---CCCccEEEEecC-------CCeEEEEEeecCcc
Q 011970 204 SAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRS---SSHVPLKILSIE-------DGTVLKVFYHLLHR 272 (474)
Q Consensus 204 ~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~---s~D~tIkLWdi~-------tG~~L~tl~~h~~~ 272 (474)
||.|.++||||+++|+++.++. ...|+.+.|++++.++.++.+ +....|-+.|++ .-+++..+..+...
T Consensus 70 GSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk 149 (327)
T KOG0643|consen 70 GSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK 149 (327)
T ss_pred ccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccc
Confidence 9999999999999999999998 568999999986666555433 223468999998 44556666655566
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCce-EEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEe
Q 011970 273 NKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 349 (474)
Q Consensus 273 v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~-~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl 349 (474)
+.++-+. |-++.|+++.+|+.|.+||+++|+. ++.-+-|...|..+.||||..+|+|+| |.|-||||++ -++++|+
T Consensus 150 it~a~Wg-~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 150 ITSALWG-PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred eeeeeec-ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence 6777776 6689999999999999999999865 455577999999999999999999999 9999999995 8999999
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc-cccCCCC--eEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCC
Q 011970 350 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ-WMEGSAG--SINVSSILTGKCLAKINATNCSPKVDDELGSSSTG 426 (474)
Q Consensus 350 ~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~-~~~s~Dg--tIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~ 426 (474)
.-- +.||+.+|+|-.+.++-|+.-+..|- .+..+.| --|.+++...+.+.-++||=+
T Consensus 229 ~te------~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-------------- 288 (327)
T KOG0643|consen 229 TTE------RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-------------- 288 (327)
T ss_pred eec------ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc--------------
Confidence 743 34899999999998888754111111 1111111 133444444556666777765
Q ss_pred ccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEc
Q 011970 427 KSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 472 (474)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklW 472 (474)
+|.+|||+|||+-.+||++||.|||-
T Consensus 289 --------------------PINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 289 --------------------PINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred --------------------CcceeEECCCCcccccCCCCceEEEE
Confidence 89999999999999999999999983
No 48
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=2.5e-29 Score=269.67 Aligned_cols=237 Identities=14% Similarity=0.154 Sum_probs=191.7
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEE-------------E--cCCcEEEEEEcC-C-ceEEEEecCCCCccE
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-------------I--SDKHVQEIKISP-G-IMLLIFNRSSSHVPL 252 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~t-------------l--~~~~V~~vafSp-g-~~la~~s~~s~D~tI 252 (474)
...++ +||..+++++.+.....|+...|..+.. + |...|.+|+|+| + ..||++ +.|++|
T Consensus 25 ~~~~~-~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSg---S~DgtI 100 (493)
T PTZ00421 25 PSTAL-WDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTA---SEDGTI 100 (493)
T ss_pred ccccc-CCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEE---eCCCEE
Confidence 34565 5777788888888888898766554321 2 345799999998 4 466665 568999
Q ss_pred EEEecCCC-------eEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCC
Q 011970 253 KILSIEDG-------TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN 325 (474)
Q Consensus 253 kLWdi~tG-------~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg 325 (474)
+|||+.++ +++.+|.+|...|..|+|+|..+..|++++.|++|+|||+++++++..+.+|...|.+++|+|+|
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence 99999876 36788999999999999985434678888999999999999999999999999999999999999
Q ss_pred cEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe-
Q 011970 326 QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK- 402 (474)
Q Consensus 326 ~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~- 402 (474)
++|++++ |++|+|||++ |+++.++.+|.... +..+.|.|++.+|++++.+ .+.|++|+|||+.+.+
T Consensus 181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~----~~~~~w~~~~~~ivt~G~s-------~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK----SQRCLWAKRKDLIITLGCS-------KSQQRQIMLWDTRKMAS 249 (493)
T ss_pred CEEEEecCCCEEEEEECCCCcEEEEEecCCCCc----ceEEEEcCCCCeEEEEecC-------CCCCCeEEEEeCCCCCC
Confidence 9999999 9999999995 99999999998643 3567899999888876531 2458999999997654
Q ss_pred EEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEc-CCCcEEEccC
Q 011970 403 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVHVWSN 474 (474)
Q Consensus 403 cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs-~DgtVklWd~ 474 (474)
++.++..|.. ..+....|+||++.|++|+ .|++||+||.
T Consensus 250 p~~~~~~d~~---------------------------------~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 250 PYSTVDLDQS---------------------------------SALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred ceeEeccCCC---------------------------------CceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 5555544432 1566789999999999988 5999999984
No 49
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=8.1e-31 Score=266.24 Aligned_cols=334 Identities=14% Similarity=0.108 Sum_probs=245.2
Q ss_pred cCCCcCcchhhhhhhcccccccCCcccccchhhhhhcccccceeecccCCCCCccccccccccc-ccEE----EEEee--
Q 011970 25 RVRSDGFVNSVKKLQRREICSKRDRAFSISNAQERFRNMHLVEEYDTHDPKGHCPFVLPFLMKR-TKVI----EIVAA-- 97 (474)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~V~----~i~~s-- 97 (474)
|...++..-.++-+|-|-....++|+...-+.. --+.|..-....+.|..+ +..+|.... .+|. .|...
T Consensus 32 Rr~VDy~s~v~~~~~nR~~~~~~d~~~~~p~~~---~~~~~~pp~~~~~dp~~~-~~tKf~h~s~NKvkc~V~~v~WtPe 107 (464)
T KOG0284|consen 32 RRTVDYNSPVCNYRQNRRWQYDRDRALLQPDSS---YIIDLVPPSLYLDDPSSA-FTTKFVHTSSNKVKCPVNVVRWTPE 107 (464)
T ss_pred hcccCCCcHHHHHHHHHhhcccccccccCCCch---hhhcccChhhccCCcccc-cccceEeccccccccceeeEEEcCC
Confidence 444566666667777666655555544221111 112222222222333333 335554433 3444 44444
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~ 177 (474)
|..|++|+++|-..|||.. .=...++...|+..|+++.+|++|..+||++ .+ ..|++|+......
T Consensus 108 GRRLltgs~SGEFtLWNg~-~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD----~g------G~iKyWqpnmnnV---- 172 (464)
T KOG0284|consen 108 GRRLLTGSQSGEFTLWNGT-SFNFETILQAHDSPVRTMKWSHNGTWMISGD----KG------GMIKYWQPNMNNV---- 172 (464)
T ss_pred CceeEeecccccEEEecCc-eeeHHHHhhhhcccceeEEEccCCCEEEEcC----CC------ceEEecccchhhh----
Confidence 8999999999999999942 2223345557999999999999999999954 44 6899998644433
Q ss_pred ceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEE
Q 011970 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKI 254 (474)
Q Consensus 178 ~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkL 254 (474)
+.+...+-..|..|+||| |....+++|.|++|||||...++.-..|. +-.|.+|+++| .+.+|++ |.|.+|||
T Consensus 173 k~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasg---skDnlVKl 248 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASG---SKDNLVKL 248 (464)
T ss_pred HHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEc---cCCceeEe
Confidence 223222223566999995 66678899999999999998887655555 45799999999 4555554 55889999
Q ss_pred EecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCC-CcEEEEEc-
Q 011970 255 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE-NQLFLTFR- 332 (474)
Q Consensus 255 Wdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspd-g~llaS~s- 332 (474)
||.++|+||.++.+|.+.|..|.|. +.+..||++|.|.++|++|+++-+-+.++++|...|++++++|= -.+|.|++
T Consensus 249 WDprSg~cl~tlh~HKntVl~~~f~-~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~ 327 (464)
T KOG0284|consen 249 WDPRSGSCLATLHGHKNTVLAVKFN-PNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGS 327 (464)
T ss_pred ecCCCcchhhhhhhccceEEEEEEc-CCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccC
Confidence 9999999999999999999999998 55678888999999999999988888999999999999999984 45666677
Q ss_pred CCcEEEEeCC-CcEEEEec-cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 333 NRTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 333 D~tIklWd~~-G~ll~tl~-gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
|+.|..|.+. -+.+-.++ +|..- ||++++.|=|.+|++|+. |.++|.|.-
T Consensus 328 Dgsvvh~~v~~~~p~~~i~~AHd~~-----iwsl~~hPlGhil~tgsn-----------d~t~rfw~r 379 (464)
T KOG0284|consen 328 DGSVVHWVVGLEEPLGEIPPAHDGE-----IWSLAYHPLGHILATGSN-----------DRTVRFWTR 379 (464)
T ss_pred CCceEEEeccccccccCCCcccccc-----eeeeeccccceeEeecCC-----------Ccceeeecc
Confidence 9999999996 44444443 56654 799999999999999876 999999973
No 50
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4e-29 Score=243.70 Aligned_cols=229 Identities=14% Similarity=0.206 Sum_probs=194.0
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCC---CeEEEEEc---CCcEEEEEEcC-CceEEEEecCCCCccEEEEe
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN---YTMLYSIS---DKHVQEIKISP-GIMLLIFNRSSSHVPLKILS 256 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t---g~~l~tl~---~~~V~~vafSp-g~~la~~s~~s~D~tIkLWd 256 (474)
|...+++|+|+|.-|.+||||+.|++||+|++.. ..|...+. ...|++||+|| |..||++ |.|.|+-||.
T Consensus 13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~a---SFD~t~~Iw~ 89 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASA---SFDATVVIWK 89 (312)
T ss_pred CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEe---eccceEEEee
Confidence 3456779999843388999999999999999884 55766664 46899999999 6666554 7799999998
Q ss_pred cCCC--eEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCC---ceEEeccccCCceEEEEEcCCCcEEEEE
Q 011970 257 IEDG--TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA---ELMEVSRTEFMTPSAFIFLYENQLFLTF 331 (474)
Q Consensus 257 i~tG--~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg---~~~~~l~~h~~~v~sv~Fspdg~llaS~ 331 (474)
=++| +|+.+|+||...|++|+|+ .+|.+|++.+.|+.|=||.+..+ +|+.+|.+|++.|.-++|.|-..+|+|+
T Consensus 90 k~~~efecv~~lEGHEnEVK~Vaws-~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~ 168 (312)
T KOG0645|consen 90 KEDGEFECVATLEGHENEVKCVAWS-ASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSC 168 (312)
T ss_pred cCCCceeEEeeeeccccceeEEEEc-CCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEe
Confidence 6655 7899999999999999998 57888888999999999998854 4888999999999999999999999999
Q ss_pred c-CCcEEEEeCC----CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 332 R-NRTVAVWNFR----GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 332 s-D~tIklWd~~----G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
| |+|||+|... -+|+++|.+|... |++++|.|+|+.|+|++. |+||+||-.. ..
T Consensus 169 SYDnTIk~~~~~~dddW~c~~tl~g~~~T-----VW~~~F~~~G~rl~s~sd-----------D~tv~Iw~~~-----~~ 227 (312)
T KOG0645|consen 169 SYDNTIKVYRDEDDDDWECVQTLDGHENT-----VWSLAFDNIGSRLVSCSD-----------DGTVSIWRLY-----TD 227 (312)
T ss_pred ccCCeEEEEeecCCCCeeEEEEecCccce-----EEEEEecCCCceEEEecC-----------CcceEeeeec-----cC
Confidence 9 9999999974 3599999999875 899999999999999876 9999999754 22
Q ss_pred ecC-CCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 407 INA-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 407 l~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
+.+ |+. .++.|++. +| .||||+.|+.|+|..
T Consensus 228 ~~~~~sr----------------------------------~~Y~v~W~-~~-~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 228 LSGMHSR----------------------------------ALYDVPWD-NG-VIASGGGDDAIRLFK 259 (312)
T ss_pred cchhccc----------------------------------ceEeeeec-cc-ceEeccCCCEEEEEE
Confidence 322 332 78999998 44 799999999999863
No 51
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=4e-29 Score=246.37 Aligned_cols=273 Identities=9% Similarity=0.129 Sum_probs=224.5
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccc--eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 162 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~--~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~ 162 (474)
|...|..+.|. |..+|+++.|+.|-||+.. |. ..-.++| |.+.|..|-|++||..|.|+| .| ++
T Consensus 46 h~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~-gdceN~~~lkg-HsgAVM~l~~~~d~s~i~S~g----tD------k~ 113 (338)
T KOG0265|consen 46 HKGEIYTIKFHPDGSCFASGGSDRAIVLWNVY-GDCENFWVLKG-HSGAVMELHGMRDGSHILSCG----TD------KT 113 (338)
T ss_pred CcceEEEEEECCCCCeEeecCCcceEEEEecc-ccccceeeecc-ccceeEeeeeccCCCEEEEec----CC------ce
Confidence 44445555554 9999999999999999955 44 4556786 889999999999999999976 55 79
Q ss_pred EEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC-CcEEEEEEcC-CceE
Q 011970 163 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISP-GIML 240 (474)
Q Consensus 163 ~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~-~~V~~vafSp-g~~l 240 (474)
++.||+++|++...++. |..-+.++.=+..+-+++.|++.|+|+||||+.+-.+++++.. ..+.+|.|.+ +...
T Consensus 114 v~~wD~~tG~~~rk~k~----h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv 189 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKG----HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQV 189 (338)
T ss_pred EEEEecccceeeehhcc----ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccce
Confidence 99999999998653332 3333334433334557889999999999999998888888874 5799999995 4444
Q ss_pred EEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC----CceEEeccccCC--
Q 011970 241 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN----AELMEVSRTEFM-- 314 (474)
Q Consensus 241 a~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t----g~~~~~l~~h~~-- 314 (474)
.+ ++-|+.||+||+..+.++.+++||.+.|..+.-+ +.|..+++-+.|.++++||++- ..|+.++.+|..
T Consensus 190 ~s---ggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls-~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf 265 (338)
T KOG0265|consen 190 IS---GGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLS-RYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF 265 (338)
T ss_pred ee---ccccCceeeeccccCcceEEeecccCceeeEEec-cCCCccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence 43 3668899999999999999999999999999977 7799999999999999999984 457888888653
Q ss_pred --ceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC
Q 011970 315 --TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 390 (474)
Q Consensus 315 --~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~D 390 (474)
..-.+++||+++.+..++ |+.+-+||.. -.++..|.||.+. |+.+.|+|...+|.|++. |
T Consensus 266 eknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gs-----vn~~~Fhp~e~iils~~s-----------d 329 (338)
T KOG0265|consen 266 EKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGS-----VNEVDFHPTEPIILSCSS-----------D 329 (338)
T ss_pred hhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCccee-----EEEeeecCCCcEEEEecc-----------C
Confidence 234678999999999998 9999999997 5799999999997 799999999999999865 9
Q ss_pred CeEEE
Q 011970 391 GSINV 395 (474)
Q Consensus 391 gtIkl 395 (474)
++|-|
T Consensus 330 k~i~l 334 (338)
T KOG0265|consen 330 KTIYL 334 (338)
T ss_pred ceeEe
Confidence 99976
No 52
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.2e-28 Score=264.29 Aligned_cols=296 Identities=15% Similarity=0.148 Sum_probs=247.3
Q ss_pred eCCCeEEeeeccc-cce------e--eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCC
Q 011970 105 AHSGVCAAFSRET-NRR------I--CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 175 (474)
Q Consensus 105 s~dgtiklW~~~t-g~~------l--~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~ 175 (474)
-.+.++..+.++. +.. + .++.| |.+-|+++.||.|+..|+|++ . ..++||+..+++|+.
T Consensus 341 l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~G-HR~dVRsl~vS~d~~~~~Sga----~-------~SikiWn~~t~kciR 408 (888)
T KOG0306|consen 341 LANNTVEWYSLENSGKTSPEADRTSNIEIGG-HRSDVRSLCVSSDSILLASGA----G-------ESIKIWNRDTLKCIR 408 (888)
T ss_pred eecCceEEEEeccCCCCCccccccceeeecc-chhheeEEEeecCceeeeecC----C-------CcEEEEEccCcceeE
Confidence 5567777877664 222 1 24555 778899999999998777743 3 489999999999965
Q ss_pred ccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCc-eEEEEecCCCCccE
Q 011970 176 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGI-MLLIFNRSSSHVPL 252 (474)
Q Consensus 176 ~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~-~la~~s~~s~D~tI 252 (474)
+ ++. +++-...|- |.+++++.|...|.+.|+|+....++-++. ++.||+++.+|++ -++++ |.|+||
T Consensus 409 T---i~~---~y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~---saDktV 478 (888)
T KOG0306|consen 409 T---ITC---GYILASKFV-PGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTG---SADKTV 478 (888)
T ss_pred E---ecc---ccEEEEEec-CCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEe---cCCcEE
Confidence 3 333 366678897 799999999999999999999999887776 6789999999854 45554 569999
Q ss_pred EEEecCC-----CeEEEEEe-------ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEE
Q 011970 253 KILSIED-----GTVLKVFY-------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFI 320 (474)
Q Consensus 253 kLWdi~t-----G~~L~tl~-------~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~ 320 (474)
|+||.+- |+.-+.|. .....+.+|.++ |++..|+++=-|.|++|+=+.+-+..-.|-||.-+|.++.
T Consensus 479 kfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S-pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smD 557 (888)
T KOG0306|consen 479 KFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS-PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMD 557 (888)
T ss_pred EEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc-CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEe
Confidence 9998631 32222122 123567899988 5666666677999999999999999889999999999999
Q ss_pred EcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 321 FLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 321 Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
.|||+++++|+| |++||+|-++ |+|-++|-+|.+. |.+|.|-|+-.++.++++ |+.||=||-
T Consensus 558 IS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDS-----vm~V~F~P~~~~FFt~gK-----------D~kvKqWDg 621 (888)
T KOG0306|consen 558 ISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS-----VMSVQFLPKTHLFFTCGK-----------DGKVKQWDG 621 (888)
T ss_pred ccCCcCeEEeccCCCceEEeccccchhhhhhhcccCc-----eeEEEEcccceeEEEecC-----------cceEEeech
Confidence 999999999999 9999999998 9999999999987 799999999999999887 999999998
Q ss_pred CCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 399 LTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 399 ~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
..=+|+++|.||.. .||+++.+|+|.+++|+|.|.+||+|.
T Consensus 622 ~kFe~iq~L~~H~~----------------------------------ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 622 EKFEEIQKLDGHHS----------------------------------EVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred hhhhhheeeccchh----------------------------------eeeeeEEcCCCCeEEeccCCceeEeee
Confidence 88899999999996 899999999999999999999999995
No 53
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=2.7e-28 Score=261.77 Aligned_cols=257 Identities=12% Similarity=0.170 Sum_probs=192.4
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCcccee----eeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC
Q 011970 132 IRSLFYNKNNDSLITVSVYASDNFSSLK----CRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 132 i~sv~fspdg~~Lis~S~~~s~d~s~Lk----~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
|+...+++|+..+++++ .+|--+. ....-++.-..|+.....+++. +|...|..|+|+|.|+++||+||.|
T Consensus 23 i~~~~~~~d~~~~~~~n----~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~-GH~~~V~~v~fsP~d~~~LaSgS~D 97 (493)
T PTZ00421 23 VTPSTALWDCSNTIACN----DRFIAVPWQQLGSTAVLKHTDYGKLASNPPILL-GQEGPIIDVAFNPFDPQKLFTASED 97 (493)
T ss_pred cccccccCCCCCcEeEC----CceEEEEEecCCceEEeeccccccCCCCCceEe-CCCCCEEEEEEcCCCCCEEEEEeCC
Confidence 55666667766566543 3311100 0112233335566544334454 3567788999984389999999999
Q ss_pred CcEEEeecCCC-------eEEEEEc--CCcEEEEEEcCC--ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEE
Q 011970 208 SIYKVFDLKNY-------TMLYSIS--DKHVQEIKISPG--IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 276 (474)
Q Consensus 208 ~tiKlWdl~tg-------~~l~tl~--~~~V~~vafSpg--~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V 276 (474)
++|+|||+.++ +++.++. ...|..|+|+|. .+|+++ +.|++|+|||+++|+++.++.+|...+.++
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSg---s~DgtVrIWDl~tg~~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASA---GADMVVNVWDVERGKAVEVIKCHSDQITSL 174 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEE---eCCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence 99999999765 2455665 467999999983 467765 558999999999999999999999999999
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCc-eEEEEEcCCCcEEEEE----c-CCcEEEEeCC--CcEEEE
Q 011970 277 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMT-PSAFIFLYENQLFLTF----R-NRTVAVWNFR--GELVTS 348 (474)
Q Consensus 277 ~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~-v~sv~Fspdg~llaS~----s-D~tIklWd~~--G~ll~t 348 (474)
+|+ |++..|++++.|++|+|||+++++++..+.+|... +..+.|.|++.++++. + |++|+|||++ .+.+.+
T Consensus 175 a~s-pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 175 EWN-LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred EEE-CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 998 57788888999999999999999999888888764 3467789887777764 3 7999999995 456666
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 349 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 349 l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
+..|... .+...+|+||+++|++++. .|++|++||+.+|+++..++...
T Consensus 254 ~~~d~~~----~~~~~~~d~d~~~L~lggk----------gDg~Iriwdl~~~~~~~~~~~~s 302 (493)
T PTZ00421 254 VDLDQSS----ALFIPFFDEDTNLLYIGSK----------GEGNIRCFELMNERLTFCSSYSS 302 (493)
T ss_pred eccCCCC----ceEEEEEcCCCCEEEEEEe----------CCCeEEEEEeeCCceEEEeeccC
Confidence 6544432 2567789999999998864 39999999999999888765543
No 54
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-29 Score=242.63 Aligned_cols=233 Identities=15% Similarity=0.215 Sum_probs=202.6
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEc-CCceEEEEecCCCCccEEEEecCCCe
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGT 261 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~ 261 (474)
.+.+..|.|. .||++..+++.|+|||||+...|.|++|.+ ++.|.+++.+ ++..+++ +++|+-+.+||++||+
T Consensus 17 qgaV~avryN-~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s---~GgDk~v~vwDV~TGk 92 (307)
T KOG0316|consen 17 QGAVRAVRYN-VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFAS---CGGDKAVQVWDVNTGK 92 (307)
T ss_pred ccceEEEEEc-cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccccccccc---CCCCceEEEEEcccCe
Confidence 4567789997 899999999999999999999999998886 5789999999 5667665 4779999999999999
Q ss_pred EEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC--CceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEE
Q 011970 262 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 338 (474)
Q Consensus 262 ~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t--g~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIkl 338 (474)
.++.|.+|...|..|.|++ +..-+++++.|.++|+||.++ -++++++..-.+.|.++... +..+++|| |||++.
T Consensus 93 v~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRt 169 (307)
T KOG0316|consen 93 VDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRT 169 (307)
T ss_pred eeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEE
Confidence 9999999999999999985 345666689999999999986 56899999888999998665 46788999 999999
Q ss_pred EeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCc
Q 011970 339 WNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 417 (474)
Q Consensus 339 Wd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~ 417 (474)
+|++ |++....-||. |+++.|||||+....+|- |++|||-|-.|||.|+..+||.+ .
T Consensus 170 ydiR~G~l~sDy~g~p-------it~vs~s~d~nc~La~~l-----------~stlrLlDk~tGklL~sYkGhkn--~-- 227 (307)
T KOG0316|consen 170 YDIRKGTLSSDYFGHP-------ITSVSFSKDGNCSLASSL-----------DSTLRLLDKETGKLLKSYKGHKN--M-- 227 (307)
T ss_pred EEeecceeehhhcCCc-------ceeEEecCCCCEEEEeec-----------cceeeecccchhHHHHHhccccc--c--
Confidence 9996 99887777774 799999999999998887 99999999999999999999996 1
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 418 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
+.=....|+.--..++|||+||.|.+||.
T Consensus 228 ----------------------------eykldc~l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 228 ----------------------------EYKLDCCLNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred ----------------------------eeeeeeeecccceeEEeccCCceEEEEEe
Confidence 12234667777788999999999999984
No 55
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=4.8e-29 Score=265.69 Aligned_cols=279 Identities=15% Similarity=0.193 Sum_probs=228.3
Q ss_pred ceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceE-EEEeCCC
Q 011970 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGF-VEFDDVN 197 (474)
Q Consensus 119 ~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~-V~Fs~~n 197 (474)
+.-|.|.| |+.-|+.|++.+.. .++++| .| +++++|.-+.++..... .|+ ++.+++.. ++|.+.+
T Consensus 5 ~ls~~l~g-H~~DVr~v~~~~~~-~i~s~s----Rd------~t~~vw~~~~~~~l~~~-~~~-~~~g~i~~~i~y~e~~ 70 (745)
T KOG0301|consen 5 KLSHELEG-HKSDVRAVAVTDGV-CIISGS----RD------GTVKVWAKKGKQYLETH-AFE-GPKGFIANSICYAESD 70 (745)
T ss_pred eeEEEecc-CccchheeEecCCe-EEeecC----CC------CceeeeeccCcccccce-ecc-cCcceeeccceecccc
Confidence 44578887 66678999988876 466644 66 78999995555553321 233 24555544 6775445
Q ss_pred CeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeE
Q 011970 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKK 275 (474)
Q Consensus 198 Gk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~ 275 (474)
+-.|..|+.|.+|-+|.+.+..++++|.+ .+|-++.+-....++++ |=|.|+|+|-+ |+|..++.+|+..||+
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSg---SWD~TakvW~~--~~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISG---SWDSTAKVWRI--GELVYSLQGHTASVWA 145 (745)
T ss_pred CcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEec---ccccceEEecc--hhhhcccCCcchheee
Confidence 55689999999999999999999999975 57988887766666665 44899999985 7999999999999999
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCCCcEEEEeccCCCC
Q 011970 276 VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLW 355 (474)
Q Consensus 276 V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~G~ll~tl~gH~~~ 355 (474)
|.+.+ . +++++||.|++||||. .+++++++.||++.|+.+++.|++.++.++.||.|++|+++|+++..+.||+..
T Consensus 146 v~~l~-e-~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~ 221 (745)
T KOG0301|consen 146 VASLP-E-NTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNF 221 (745)
T ss_pred eeecC-C-CcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceE
Confidence 99984 3 3899999999999997 489999999999999999999998766554599999999999999999999997
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccc
Q 011970 356 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 435 (474)
Q Consensus 356 ~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (474)
|.++.-.++++.|+|++. |+|+|||+. ++|++.|.=-+-
T Consensus 222 -----vYsis~~~~~~~Ivs~gE-----------DrtlriW~~--~e~~q~I~lPtt----------------------- 260 (745)
T KOG0301|consen 222 -----VYSISMALSDGLIVSTGE-----------DRTLRIWKK--DECVQVITLPTT----------------------- 260 (745)
T ss_pred -----EEEEEecCCCCeEEEecC-----------CceEEEeec--CceEEEEecCcc-----------------------
Confidence 688998889999999765 999999996 599999864332
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 436 YIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 436 ~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.||++.+-++|. ||+|+.||.||||.
T Consensus 261 -----------siWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 261 -----------SIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred -----------ceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 799999999997 78899999999994
No 56
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=3e-27 Score=246.12 Aligned_cols=322 Identities=14% Similarity=0.139 Sum_probs=251.0
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeec--CCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNV--SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 162 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g--~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~ 162 (474)
|..=|.+|.|+ |..+|+.+-||++-+||=.||+.++.|.. .|.+.|++|+|+||++.++|+|+| .+
T Consensus 189 HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD----------kt 258 (603)
T KOG0318|consen 189 HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD----------KT 258 (603)
T ss_pred cccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC----------ce
Confidence 55569999999 99999999999999999999999999972 388999999999999999999853 59
Q ss_pred EEEeEeccCCCCCccc------------eee---------------------------eccccCceEEEEeCCCCeEEEE
Q 011970 163 TKIEYIRRGKPDSGFA------------LFE---------------------------SESLKWPGFVEFDDVNGKVLTY 203 (474)
Q Consensus 163 ~~iw~i~~G~~~~~~~------------lf~---------------------------~~~~~~~~~V~Fs~~nGk~LaS 203 (474)
+||||+.++++..+++ ||+ .+|.+.+.+++-+ |||++|-|
T Consensus 259 ~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~-~d~~~i~S 337 (603)
T KOG0318|consen 259 IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVS-PDGKTIYS 337 (603)
T ss_pred EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEc-CCCCEEEe
Confidence 9999998887733322 222 1345666678887 79999999
Q ss_pred ecCCCcEEEeecCCCeEEE---EEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEE---------------
Q 011970 204 SAQDSIYKVFDLKNYTMLY---SISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV--------------- 265 (474)
Q Consensus 204 ~s~D~tiKlWdl~tg~~l~---tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~t--------------- 265 (474)
||.||.|-=||..+|.+-. ..|.+.|..++-+..+-+.+. +-|.++|+-+++.+.+-+.
T Consensus 338 gsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~---g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~ 414 (603)
T KOG0318|consen 338 GSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTI---GWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL 414 (603)
T ss_pred eccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEE---ecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence 9999999999998887532 335667888888863334443 4467787776643222111
Q ss_pred ----------------Eeec--------CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEE--eccccCCceEEE
Q 011970 266 ----------------FYHL--------LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFMTPSAF 319 (474)
Q Consensus 266 ----------------l~~h--------~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~--~l~~h~~~v~sv 319 (474)
|+.+ .-....|+++ |++...++|++|+.|+|+-+..+++.+ .+..|...|+.+
T Consensus 415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~-~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v 493 (603)
T KOG0318|consen 415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS-PDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDV 493 (603)
T ss_pred CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEc-CCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEE
Confidence 1111 0122456655 677788889999999999999888654 467799999999
Q ss_pred EEcCCCcEEEEEc-CCcEEEEeCC-CcEEE-EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 011970 320 IFLYENQLFLTFR-NRTVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 396 (474)
Q Consensus 320 ~Fspdg~llaS~s-D~tIklWd~~-G~ll~-tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklW 396 (474)
+||||+.+||++. .+.|-+||+. .+... .+.=|+.. |+.+++|||.+++|+||- |-+|-||
T Consensus 494 aySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtak-----I~~~aWsP~n~~vATGSl-----------Dt~Viiy 557 (603)
T KOG0318|consen 494 AYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAK-----INCVAWSPNNKLVATGSL-----------DTNVIIY 557 (603)
T ss_pred EECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeee-----EEEEEeCCCceEEEeccc-----------cceEEEE
Confidence 9999999999999 9999999995 66543 33348876 799999999999999987 9999999
Q ss_pred eCCC-CeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 397 SILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 397 di~t-G~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
++.. .+.+....+|.. .|++|+|-- -.+|+|.+.|-.||+|+.
T Consensus 558 sv~kP~~~i~iknAH~~----------------------------------gVn~v~wld-e~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 558 SVKKPAKHIIIKNAHLG----------------------------------GVNSVAWLD-ESTVVSSGQDANIKVWNV 601 (603)
T ss_pred EccChhhheEecccccc----------------------------------CceeEEEec-CceEEeccCcceeEEecc
Confidence 9964 455666667764 799999964 468999999999999974
No 57
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.5e-29 Score=244.73 Aligned_cols=277 Identities=13% Similarity=0.199 Sum_probs=234.5
Q ss_pred ccccEEEEEee-----ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeee
Q 011970 87 KRTKVIEIVAA-----RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (474)
Q Consensus 87 ~~~~V~~i~~s-----~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~ 161 (474)
|.-+|.++.|+ |-.|+|++.||.=-|-+-+||--|-|+.| |.+.||+..+++|.-.-||++ .| -
T Consensus 13 htrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeg-hkgavw~~~l~~na~~aasaa----ad------f 81 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEG-HKGAVWSATLNKNATRAASAA----AD------F 81 (334)
T ss_pred CCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeec-cCcceeeeecCchhhhhhhhc----cc------c
Confidence 66778888888 89999999999999999999999999998 889999999999987667755 45 5
Q ss_pred EEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEE
Q 011970 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLL 241 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la 241 (474)
+.+|||..+|..+. -|++.|+ +..|+|+ .|.++|.+|++++.+||+|++..+
T Consensus 82 takvw~a~tgdelh---sf~hkhi--vk~~af~-~ds~~lltgg~ekllrvfdln~p~---------------------- 133 (334)
T KOG0278|consen 82 TAKVWDAVTGDELH---SFEHKHI--VKAVAFS-QDSNYLLTGGQEKLLRVFDLNRPK---------------------- 133 (334)
T ss_pred hhhhhhhhhhhhhh---hhhhhhe--eeeEEec-ccchhhhccchHHHhhhhhccCCC----------------------
Confidence 78899999998644 2555433 4589998 799999999999999999986311
Q ss_pred EEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEE
Q 011970 242 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF 321 (474)
Q Consensus 242 ~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~F 321 (474)
...+.+.+|...|+.|-|. ..+..+|++.+|+||||||.++|..++.+.-. +.|.++-.
T Consensus 134 -------------------App~E~~ghtg~Ir~v~wc-~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEv 192 (334)
T KOG0278|consen 134 -------------------APPKEISGHTGGIRTVLWC-HEDKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEV 192 (334)
T ss_pred -------------------CCchhhcCCCCcceeEEEe-ccCceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceee
Confidence 2234566777888888886 44678888899999999999999999887643 47889999
Q ss_pred cCCCcEEEEEcCCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 322 LYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 322 spdg~llaS~sD~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
++||+++..+.-++|+.||.. =+++++++-. |+|.+..++|+-.+++.|.. |..+.-+|..|
T Consensus 193 s~dG~ilTia~gssV~Fwdaksf~~lKs~k~P------~nV~SASL~P~k~~fVaGge-----------d~~~~kfDy~T 255 (334)
T KOG0278|consen 193 SQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP------CNVESASLHPKKEFFVAGGE-----------DFKVYKFDYNT 255 (334)
T ss_pred ccCCCEEEEecCceeEEeccccccceeeccCc------cccccccccCCCceEEecCc-----------ceEEEEEeccC
Confidence 999999988778899999994 6677776532 67999999999999998754 99999999999
Q ss_pred CeEEEEe-cCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 401 GKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 401 G~cl~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
|+.+..+ +||-+ +|.+|.|||||...||||+|||||||..
T Consensus 256 geEi~~~nkgh~g----------------------------------pVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 256 GEEIGSYNKGHFG----------------------------------PVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred CceeeecccCCCC----------------------------------ceEEEEECCCCceeeccCCCceEEEEEe
Confidence 9999886 88875 8999999999999999999999999973
No 58
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=2.6e-29 Score=255.53 Aligned_cols=286 Identities=15% Similarity=0.222 Sum_probs=228.4
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEE
Q 011970 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 202 (474)
Q Consensus 123 ~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~La 202 (474)
.|. .|...+..|-|-++.++|+++ +.| +.|++|++.-+++..-..|-+ ..+.+..+.|+ ++++.+.
T Consensus 170 ~ld-~h~gev~~v~~l~~sdtlatg----g~D------r~Ik~W~v~~~k~~~~~tLaG--s~g~it~~d~d-~~~~~~i 235 (459)
T KOG0288|consen 170 VLD-AHEGEVHDVEFLRNSDTLATG----GSD------RIIKLWNVLGEKSELISTLAG--SLGNITSIDFD-SDNKHVI 235 (459)
T ss_pred hhh-ccccccceeEEccCcchhhhc----chh------hhhhhhhcccchhhhhhhhhc--cCCCcceeeec-CCCceEE
Confidence 344 477889999999999999995 466 899999988777533223333 35667789998 6788888
Q ss_pred EecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEe
Q 011970 203 YSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE 280 (474)
Q Consensus 203 S~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~ 280 (474)
+++.|++.++|++.+++++.||.+ +.|.+++|.-+.--+++ ++.|.|||+||++.+.|.++.-- ...+..|...
T Consensus 236 Aas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVs--gs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~- 311 (459)
T KOG0288|consen 236 AASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVS--GSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS- 311 (459)
T ss_pred eecCCCceeeeeccchhhhhhhcccccceeeehhhccccceee--ccccchhhhhhhhhhheeccccc-cccccceEec-
Confidence 899999999999999999988864 68999999964442444 46799999999999999998752 2344555532
Q ss_pred cCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCC
Q 011970 281 QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPD 358 (474)
Q Consensus 281 ~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~ 358 (474)
+..++++-.|++||.||++++.+......|. .|.++..+++|.-++|++ |.++++-|++ -+..++|..-... ..
T Consensus 312 --~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k-~a 387 (459)
T KOG0288|consen 312 --ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK-CA 387 (459)
T ss_pred --ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccc-cc
Confidence 1233345589999999999999998877776 899999999999999999 9999999997 5556666532221 12
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccccc
Q 011970 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 438 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (474)
+..+.+.||||+.|+|.||. ||.|+||++.+|||...+..... +
T Consensus 388 sDwtrvvfSpd~~YvaAGS~-----------dgsv~iW~v~tgKlE~~l~~s~s-~------------------------ 431 (459)
T KOG0288|consen 388 SDWTRVVFSPDGSYVAAGSA-----------DGSVYIWSVFTGKLEKVLSLSTS-N------------------------ 431 (459)
T ss_pred cccceeEECCCCceeeeccC-----------CCcEEEEEccCceEEEEeccCCC-C------------------------
Confidence 23578999999999999876 99999999999999999987663 0
Q ss_pred ccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 439 STVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 439 ~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
..|++++|+|-|..|++++.++.+.||.
T Consensus 432 -------~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 432 -------AAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred -------cceEEEEEcCCCchhhcccCCcceEecC
Confidence 0699999999999999999999999994
No 59
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=9.3e-28 Score=260.56 Aligned_cols=227 Identities=11% Similarity=0.096 Sum_probs=180.4
Q ss_pred ecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCe--------EEEEEeecCc
Q 011970 204 SAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGT--------VLKVFYHLLH 271 (474)
Q Consensus 204 ~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~--------~L~tl~~h~~ 271 (474)
|+.++.|+||++....++.++.+ ..|.+|+|+| +.+||++ +.|++|+|||+.++. ++.++.+|..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASg---S~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASG---SEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEE---eCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 67899999999877777777764 5799999998 4577765 568999999998752 4557889999
Q ss_pred ceeEEEEEecCCCeE-EEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEE
Q 011970 272 RNKKVDFIEQFNEKL-LVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS 348 (474)
Q Consensus 272 ~v~~V~F~~~~~~~l-l~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~t 348 (474)
.|..|+|+ |++..+ ++++.|++|+|||+++++.+..+. |...|.+++|+|+|++|++++ |++|+|||++ |+++.+
T Consensus 127 ~V~sVaf~-P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t 204 (568)
T PTZ00420 127 KISIIDWN-PMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS 204 (568)
T ss_pred cEEEEEEC-CCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 99999998 456655 467899999999999999877665 557899999999999999998 9999999995 999999
Q ss_pred eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEecCCCCCCCCccccCCCCCCc
Q 011970 349 FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGK 427 (474)
Q Consensus 349 l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gH~~~~~~~~~~~~~~~~~ 427 (474)
+.+|.+.+....++...|+||+++|+|++.+ ...+++|+|||+.+ ++++.++..+.. +
T Consensus 205 l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d-------~~~~R~VkLWDlr~~~~pl~~~~ld~~-~------------- 263 (568)
T PTZ00420 205 FHIHDGGKNTKNIWIDGLGGDDNYILSTGFS-------KNNMREMKLWDLKNTTSALVTMSIDNA-S------------- 263 (568)
T ss_pred EecccCCceeEEEEeeeEcCCCCEEEEEEcC-------CCCccEEEEEECCCCCCceEEEEecCC-c-------------
Confidence 9999875322223445678999999998751 11235899999984 788887755442 0
Q ss_pred cccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 428 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
..+....++++|..+++|+.|++||+|+.
T Consensus 264 ------------------~~L~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 264 ------------------APLIPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred ------------------cceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 04555566777999999999999999973
No 60
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=2.6e-26 Score=221.85 Aligned_cols=258 Identities=14% Similarity=0.158 Sum_probs=192.7
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEE-EEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCC-
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPG- 237 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~L-aS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg- 237 (474)
..+.+||+.+|++.. .+... ..+..++|+ |||+.| ++++.|++|++||+.+++.+.++. ...+..++|+|+
T Consensus 11 ~~v~~~d~~t~~~~~---~~~~~--~~~~~l~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g 84 (300)
T TIGR03866 11 NTISVIDTATLEVTR---TFPVG--QRPRGITLS-KDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNG 84 (300)
T ss_pred CEEEEEECCCCceEE---EEECC--CCCCceEEC-CCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCC
Confidence 689999998888644 23321 235579998 788866 677889999999999999888776 345778999985
Q ss_pred ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCC-CcEEEEECCCCceEEeccccCCce
Q 011970 238 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN-ENLQILDVRNAELMEVSRTEFMTP 316 (474)
Q Consensus 238 ~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D-~tIkIWDv~tg~~~~~l~~h~~~v 316 (474)
..++++. +.|++|++||+++++++..+..+ .....++|+ |++..++++..+ ..+.+||..+++++.....+ ..+
T Consensus 85 ~~l~~~~--~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~-~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~ 159 (300)
T TIGR03866 85 KILYIAN--EDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVS-PDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRP 159 (300)
T ss_pred CEEEEEc--CCCCeEEEEECCCCeEEeEeeCC-CCcceEEEC-CCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCc
Confidence 4455542 45789999999999999888743 345778887 677788777765 46778899999887653322 356
Q ss_pred EEEEEcCCCcEEE-EEc-CCcEEEEeCC-CcEEEEeccCCCCc-CCC-CeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 011970 317 SAFIFLYENQLFL-TFR-NRTVAVWNFR-GELVTSFEDHLLWH-PDC-NTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 391 (474)
Q Consensus 317 ~sv~Fspdg~lla-S~s-D~tIklWd~~-G~ll~tl~gH~~~~-~~~-~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg 391 (474)
..++|+|||++|+ ++. |++|++||++ ++++.++..+.... +.+ ....++|+|||++++.+.. .++
T Consensus 160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~----------~~~ 229 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG----------PAN 229 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC----------CCC
Confidence 7899999999874 555 9999999995 88888776432110 000 1236889999998665432 267
Q ss_pred eEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEc-CCCcEE
Q 011970 392 SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN-RHGLVH 470 (474)
Q Consensus 392 tIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs-~DgtVk 470 (474)
+|.+||+.+++.+..+..+. .+++++|+|||+.|++++ .+++|+
T Consensus 230 ~i~v~d~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~g~~l~~~~~~~~~i~ 274 (300)
T TIGR03866 230 RVAVVDAKTYEVLDYLLVGQ-----------------------------------RVWQLAFTPDEKYLLTTNGVSNDVS 274 (300)
T ss_pred eEEEEECCCCcEEEEEEeCC-----------------------------------CcceEEECCCCCEEEEEcCCCCeEE
Confidence 89999999999887764332 678999999999999875 699999
Q ss_pred EccC
Q 011970 471 VWSN 474 (474)
Q Consensus 471 lWd~ 474 (474)
+||.
T Consensus 275 v~d~ 278 (300)
T TIGR03866 275 VIDV 278 (300)
T ss_pred EEEC
Confidence 9984
No 61
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=230.07 Aligned_cols=283 Identities=12% Similarity=0.203 Sum_probs=230.9
Q ss_pred ceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCC
Q 011970 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (474)
Q Consensus 119 ~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG 198 (474)
+++..|.. +.+.|+.+-||-||++-.+++ .| +++|||+..+|-++++..-.++| +..++-+ .|.
T Consensus 8 kr~~~l~~-~qgaV~avryN~dGnY~ltcG----sd------rtvrLWNp~rg~liktYsghG~E----VlD~~~s-~Dn 71 (307)
T KOG0316|consen 8 KRLSILDC-AQGAVRAVRYNVDGNYCLTCG----SD------RTVRLWNPLRGALIKTYSGHGHE----VLDAALS-SDN 71 (307)
T ss_pred hhceeecc-cccceEEEEEccCCCEEEEcC----CC------ceEEeecccccceeeeecCCCce----eeecccc-ccc
Confidence 46777886 779999999999999988864 44 79999999999997654433333 3345555 345
Q ss_pred eEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCC--eEEEEEeecCccee
Q 011970 199 KVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG--TVLKVFYHLLHRNK 274 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG--~~L~tl~~h~~~v~ 274 (474)
..++||+.|+.|.+||++||+.+..+. ...|..|+|+....++.+ ++.|.+|++||-+.. +++++|......|.
T Consensus 72 skf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~S--gsfD~s~r~wDCRS~s~ePiQildea~D~V~ 149 (307)
T KOG0316|consen 72 SKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVAS--GSFDSSVRLWDCRSRSFEPIQILDEAKDGVS 149 (307)
T ss_pred cccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEe--ccccceeEEEEcccCCCCccchhhhhcCcee
Confidence 579999999999999999999998885 468999999965444443 477999999998764 67888887778899
Q ss_pred EEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccC
Q 011970 275 KVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDH 352 (474)
Q Consensus 275 ~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH 352 (474)
+|+.. +.-|++|+.|||+|.+|++-|++..-.-|| +|.++.||+||+..+.++ |.|++|-|-+ |+++++++||
T Consensus 150 Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh 224 (307)
T KOG0316|consen 150 SIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH 224 (307)
T ss_pred EEEec---ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc
Confidence 99965 467888899999999999999988766665 689999999999999999 9999999995 9999999999
Q ss_pred CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccc
Q 011970 353 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLN 432 (474)
Q Consensus 353 ~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~ 432 (474)
.+..+ -....|+..-...+|||. ||.|-+||+..+..+.++..|.. |
T Consensus 225 kn~ey---kldc~l~qsdthV~sgSE-----------DG~Vy~wdLvd~~~~sk~~~~~~-v------------------ 271 (307)
T KOG0316|consen 225 KNMEY---KLDCCLNQSDTHVFSGSE-----------DGKVYFWDLVDETQISKLSVVST-V------------------ 271 (307)
T ss_pred cccee---eeeeeecccceeEEeccC-----------CceEEEEEeccceeeeeeccCCc-e------------------
Confidence 98643 245677777788888876 99999999999999999988874 0
Q ss_pred ccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEc
Q 011970 433 KSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 472 (474)
Q Consensus 433 ~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklW 472 (474)
.|.+|+|.|--..+.++...+ +.+|
T Consensus 272 --------------~v~dl~~hp~~~~f~~A~~~~-~~~~ 296 (307)
T KOG0316|consen 272 --------------IVTDLSCHPTMDDFITATGHG-DLFW 296 (307)
T ss_pred --------------eEEeeecccCccceeEecCCc-eece
Confidence 489999999888887776443 4455
No 62
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.8e-27 Score=255.24 Aligned_cols=277 Identities=13% Similarity=0.108 Sum_probs=232.7
Q ss_pred cccccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeee
Q 011970 84 FLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (474)
Q Consensus 84 ~~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~ 161 (474)
.+-||+.|+.+.++ ...++|+ -.+.+++|++.|.+||+|+.- +-+-+..|=|.+.+++++ ... .
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~---~y~l~~~Fvpgd~~Iv~G----~k~------G 434 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITC---GYILASKFVPGDRYIVLG----TKN------G 434 (888)
T ss_pred eccchhheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEecc---ccEEEEEecCCCceEEEe----ccC------C
Confidence 35599999999999 3334443 367899999999999999963 468899999999988874 344 5
Q ss_pred EEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecC-----CCeEE--------EEEc-CC
Q 011970 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-----NYTML--------YSIS-DK 227 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~-----tg~~l--------~tl~-~~ 227 (474)
.+.+.|+..+.+..+.+. |-+.+|+++-+ |||+.+++||.|.|||+||.+ .|+.- .+|. .+
T Consensus 435 el~vfdlaS~~l~Eti~A----HdgaIWsi~~~-pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~d 509 (888)
T KOG0306|consen 435 ELQVFDLASASLVETIRA----HDGAIWSISLS-PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELED 509 (888)
T ss_pred ceEEEEeehhhhhhhhhc----cccceeeeeec-CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccc
Confidence 777888888887655442 33566699998 799999999999999999964 23321 2232 46
Q ss_pred cEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEE
Q 011970 228 HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME 307 (474)
Q Consensus 228 ~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~ 307 (474)
.|.+|++||++.+++.+ =-|.|+|++-+.|=+.--+|-||.=+|.+++.+ ||...++++|.|++||||-+.=|.|-+
T Consensus 510 dvL~v~~Spdgk~LaVs--LLdnTVkVyflDtlKFflsLYGHkLPV~smDIS-~DSklivTgSADKnVKiWGLdFGDCHK 586 (888)
T KOG0306|consen 510 DVLCVSVSPDGKLLAVS--LLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDIS-PDSKLIVTGSADKNVKIWGLDFGDCHK 586 (888)
T ss_pred cEEEEEEcCCCcEEEEE--eccCeEEEEEecceeeeeeecccccceeEEecc-CCcCeEEeccCCCceEEeccccchhhh
Confidence 89999999977666654 348999999998888888889999999999976 667777778999999999999999999
Q ss_pred eccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 011970 308 VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 385 (474)
Q Consensus 308 ~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~ 385 (474)
.+-+|.+.|.+|-|.|+..+|-|++ |+.||-||-. =+++++|.+|..- ||.++.+|+|.+++|+|.
T Consensus 587 S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e-----v~cLav~~~G~~vvs~sh------- 654 (888)
T KOG0306|consen 587 SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE-----VWCLAVSPNGSFVVSSSH------- 654 (888)
T ss_pred hhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchhe-----eeeeEEcCCCCeEEeccC-------
Confidence 9999999999999999999999999 9999999985 8999999999986 799999999999999876
Q ss_pred ccCCCCeEEEEeC
Q 011970 386 MEGSAGSINVSSI 398 (474)
Q Consensus 386 ~~s~DgtIklWdi 398 (474)
|.+||+|.-
T Consensus 655 ----D~sIRlwE~ 663 (888)
T KOG0306|consen 655 ----DKSIRLWER 663 (888)
T ss_pred ----CceeEeeec
Confidence 999999984
No 63
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=8.6e-29 Score=246.02 Aligned_cols=237 Identities=16% Similarity=0.221 Sum_probs=201.6
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc----------CCcEEEEEEc-CCceEEEEecCCCCccEE
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----------DKHVQEIKIS-PGIMLLIFNRSSSHVPLK 253 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~----------~~~V~~vafS-pg~~la~~s~~s~D~tIk 253 (474)
-.|+.+..|| |||++|++||-||-|.|||..+|++.+-+. +..|.++.|| +..|||++ +.|+.||
T Consensus 213 KSh~EcA~FS-PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsG---sqDGkIK 288 (508)
T KOG0275|consen 213 KSHVECARFS-PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASG---SQDGKIK 288 (508)
T ss_pred ccchhheeeC-CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhcc---CcCCcEE
Confidence 4577789998 899999999999999999999999765443 4689999999 67888876 6689999
Q ss_pred EEecCCCeEEEEEe-ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc
Q 011970 254 ILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 332 (474)
Q Consensus 254 LWdi~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s 332 (474)
+|.|+||+||+.|. .|...|.++.|+ .|+.++|+++.|.|+||--+.+|+|++.++||...|..+.|++||..++|+|
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FS-rD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFS-RDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEc-cCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEec
Confidence 99999999999998 799999999998 6899999999999999999999999999999999999999999999999999
Q ss_pred -CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCC-CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 333 -NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 333 -D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg-~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
|+|||+|+. +++|+.||+--..- ..|++|-.-|.. ..++-+- ..+||.|-|+ .||.++++..
T Consensus 368 sDgtvkvW~~KtteC~~Tfk~~~~d---~~vnsv~~~PKnpeh~iVCN-----------rsntv~imn~-qGQvVrsfsS 432 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFKPLGTD---YPVNSVILLPKNPEHFIVCN-----------RSNTVYIMNM-QGQVVRSFSS 432 (508)
T ss_pred CCccEEEecCcchhhhhhccCCCCc---ccceeEEEcCCCCceEEEEc-----------CCCeEEEEec-cceEEeeecc
Confidence 999999999 59999999854432 347888887754 3344333 3789999996 7999999854
Q ss_pred CCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEc
Q 011970 410 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 472 (474)
Q Consensus 410 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklW 472 (474)
-.. +.. +.-+...||.|..+|..++|+.+...
T Consensus 433 GkR----------EgG---------------------dFi~~~lSpkGewiYcigED~vlYCF 464 (508)
T KOG0275|consen 433 GKR----------EGG---------------------DFINAILSPKGEWIYCIGEDGVLYCF 464 (508)
T ss_pred CCc----------cCC---------------------ceEEEEecCCCcEEEEEccCcEEEEE
Confidence 321 111 45568899999999999999987654
No 64
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.3e-26 Score=251.60 Aligned_cols=255 Identities=11% Similarity=0.081 Sum_probs=189.1
Q ss_pred eeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeC-CCEEEEEEeecCCCccceeeeEEEEeEeccCCC-CCc--cc-
Q 011970 104 LAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP-DSG--FA- 178 (474)
Q Consensus 104 ~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspd-g~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~-~~~--~~- 178 (474)
|+.+++++||+..+...+..|.+ |...|.+|+|+|+ ++.|||+| .| .+++||+++.+.. ... .+
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~g-H~~~V~~lafsP~~~~lLASgS----~D------gtIrIWDi~t~~~~~~~i~~p~ 118 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKG-HTSSILDLQFNPCFSEILASGS----ED------LTIRVWEIPHNDESVKEIKDPQ 118 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcC-CCCCEEEEEEcCCCCCEEEEEe----CC------CeEEEEECCCCCccccccccce
Confidence 66789999999888889999997 7789999999997 78999976 55 6999999986532 110 01
Q ss_pred -eeeeccccCceEEEEeCCCCeE-EEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEE
Q 011970 179 -LFESESLKWPGFVEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKIL 255 (474)
Q Consensus 179 -lf~~~~~~~~~~V~Fs~~nGk~-LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLW 255 (474)
.+. +|...+..|+|+ |++.. ||+++.|++|+|||+.+++.+.++. ...|.+++|+|++.+++++ +.|++|+||
T Consensus 119 ~~L~-gH~~~V~sVaf~-P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~--s~D~~IrIw 194 (568)
T PTZ00420 119 CILK-GHKKKISIIDWN-PMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGT--CVGKHMHII 194 (568)
T ss_pred EEee-cCCCcEEEEEEC-CCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEE--ecCCEEEEE
Confidence 122 245678899998 67764 6899999999999999999887775 4679999999855444442 458899999
Q ss_pred ecCCCeEEEEEeecCcceeEEEEE----ecCCCeEEEEeCCC----cEEEEECCC-CceEEeccc--cCCceEEEEEcCC
Q 011970 256 SIEDGTVLKVFYHLLHRNKKVDFI----EQFNEKLLVKQENE----NLQILDVRN-AELMEVSRT--EFMTPSAFIFLYE 324 (474)
Q Consensus 256 di~tG~~L~tl~~h~~~v~~V~F~----~~~~~~ll~~~~D~----tIkIWDv~t-g~~~~~l~~--h~~~v~sv~Fspd 324 (474)
|+++|+++.++.+|.+.+....+. .+++++|++++.|+ +|+|||+++ ++++.+... +...+..+.++++
T Consensus 195 D~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~t 274 (568)
T PTZ00420 195 DPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDEST 274 (568)
T ss_pred ECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCC
Confidence 999999999999987765333322 25678899887664 899999995 667765433 3334444555778
Q ss_pred CcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 011970 325 NQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 377 (474)
Q Consensus 325 g~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s 377 (474)
|.++++|+ |++|++|++. +. +..+....... .+.+++|.|+.-+=+.-|
T Consensus 275 g~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~---p~~g~~f~Pkr~~dv~~c 325 (568)
T PTZ00420 275 GLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCS---PFRSFGFLPKQICDVYKC 325 (568)
T ss_pred CCEEEEEECCCeEEEEEccCCc-EEeecccccCC---CccceEEccccccCchhh
Confidence 99999998 9999999996 54 33333222211 257899999866544444
No 65
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.7e-27 Score=230.99 Aligned_cols=238 Identities=16% Similarity=0.242 Sum_probs=198.2
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEecCCCCccEEEEecCCCeE
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 262 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~--~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~ 262 (474)
...|.+++|+ +||+.|+++++|-+++|+|..+|+++.++... .|.-+.|.-....++.++...|.+||+.++.+-+.
T Consensus 14 ~~~i~sl~fs-~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 14 NGKINSLDFS-DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCceeEEEec-CCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 4567799998 79999999999999999999999999999853 78999999433344454556789999999999999
Q ss_pred EEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC
Q 011970 263 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 341 (474)
Q Consensus 263 L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~ 341 (474)
|+.|.||...|.++.-+ |-++.+++++.|++||+||++..+|.-.+.-. ....+||.|+|-+||.+. ...|||+|+
T Consensus 93 lRYF~GH~~~V~sL~~s-P~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~~~~IkLyD~ 169 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVS-PKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANGSELIKLYDL 169 (311)
T ss_pred EEEcCCCCceEEEEEec-CCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecCCCeEEEEEe
Confidence 99999999999999987 55799999999999999999999987664422 234578999999999998 559999998
Q ss_pred C---CcEEEEec----cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCC
Q 011970 342 R---GELVTSFE----DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSP 414 (474)
Q Consensus 342 ~---G~ll~tl~----gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~ 414 (474)
+ ...-++|. .+..| +.+.|||||++|.-+.. .+-|.|-|.-+|..+.++.+|.+
T Consensus 170 Rs~dkgPF~tf~i~~~~~~ew------~~l~FS~dGK~iLlsT~-----------~s~~~~lDAf~G~~~~tfs~~~~-- 230 (311)
T KOG1446|consen 170 RSFDKGPFTTFSITDNDEAEW------TDLEFSPDGKSILLSTN-----------ASFIYLLDAFDGTVKSTFSGYPN-- 230 (311)
T ss_pred cccCCCCceeEccCCCCccce------eeeEEcCCCCEEEEEeC-----------CCcEEEEEccCCcEeeeEeeccC--
Confidence 4 34555554 34444 78999999999998765 88999999999999999999985
Q ss_pred CCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 415 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.+.. . -+..|+|||+.+.+|+.||+|++|+.
T Consensus 231 ~~~~----------------------------~-~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 231 AGNL----------------------------P-LSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred CCCc----------------------------c-eeEEECCCCcEEEEecCCCcEEEEEc
Confidence 1000 2 35799999999999999999999973
No 66
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=6.2e-28 Score=245.56 Aligned_cols=274 Identities=12% Similarity=0.121 Sum_probs=222.6
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccc--eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 162 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~--~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~ 162 (474)
|+.+|-.|.|- .++||+++.|..|++|+..-++ .+.+|-| ....|.++.|-++|..+|.+| .| ..
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaG-s~g~it~~d~d~~~~~~iAas----~d------~~ 242 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAG-SLGNITSIDFDSDNKHVIAAS----ND------KN 242 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhc-cCCCcceeeecCCCceEEeec----CC------Cc
Confidence 55555555555 6999999999999999988776 7888887 457799999999999998865 55 68
Q ss_pred EEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEE
Q 011970 163 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLL 241 (474)
Q Consensus 163 ~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la 241 (474)
.+||++..+++..++.. |..-+.++.|.- ..-.+++|+.|.|||+||+..+.|.+++- ...+.+|.-++ . ..
T Consensus 243 ~r~Wnvd~~r~~~TLsG----HtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~-~-~~ 315 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHTLSG----HTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSI-S-DV 315 (459)
T ss_pred eeeeeccchhhhhhhcc----cccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccccccccceEecc-e-ee
Confidence 99999999988665433 334455777863 33339999999999999999999998764 67788888772 2 22
Q ss_pred EEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccC----CceE
Q 011970 242 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF----MTPS 317 (474)
Q Consensus 242 ~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~----~~v~ 317 (474)
++ +..|++||+||++++.+..+.+.+ +.|.+|+.+ +++-.+++.+.|.++++.|+++.+..+++.... ...+
T Consensus 316 ~S--gH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls-~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwt 391 (459)
T KOG0288|consen 316 IS--GHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLS-MDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWT 391 (459)
T ss_pred ee--cccccceEEEeccCCceeeEeecC-cceeeEeec-cCCeEEeeecCCCceeeeecccccEEEEeeccccccccccc
Confidence 22 577999999999999999999976 499999977 677888899999999999999999888764422 2367
Q ss_pred EEEEcCCCcEEEEEc-CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 011970 318 AFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 395 (474)
Q Consensus 318 sv~Fspdg~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIkl 395 (474)
.+.||||+.++|+|| ||.|+||++ .|+|...+...... ..|.+++|+|-|..|+++++ ++.+.|
T Consensus 392 rvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~---~aI~s~~W~~sG~~Llsadk-----------~~~v~l 457 (459)
T KOG0288|consen 392 RVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN---AAITSLSWNPSGSGLLSADK-----------QKAVTL 457 (459)
T ss_pred eeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC---cceEEEEEcCCCchhhcccC-----------CcceEe
Confidence 889999999999999 999999999 59998888765432 13899999999999999876 999999
Q ss_pred E
Q 011970 396 S 396 (474)
Q Consensus 396 W 396 (474)
|
T Consensus 458 W 458 (459)
T KOG0288|consen 458 W 458 (459)
T ss_pred c
Confidence 9
No 67
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.8e-27 Score=230.65 Aligned_cols=280 Identities=12% Similarity=0.132 Sum_probs=219.2
Q ss_pred EEEEEeeCCC-E--EEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCc
Q 011970 133 RSLFYNKNND-S--LITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 209 (474)
Q Consensus 133 ~sv~fspdg~-~--Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~t 209 (474)
++|-|||.-+ . +|++..||- +-+..+.|-++.+++-+....-|.. ..-...|++++.+..+++.++.||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl-----~G~G~L~ile~~~~~gi~e~~s~d~--~D~LfdV~Wse~~e~~~~~a~GDGS 84 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGL-----AGNGRLFILEVTDPKGIQECQSYDT--EDGLFDVAWSENHENQVIAASGDGS 84 (311)
T ss_pred ceeEecccccchhheeehhhccc-----ccCceEEEEecCCCCCeEEEEeeec--ccceeEeeecCCCcceEEEEecCce
Confidence 6889999733 2 344444442 2345666666554443221111221 1234468999777778889999999
Q ss_pred EEEeecCCC-eEEEEEc--CCcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCC
Q 011970 210 YKVFDLKNY-TMLYSIS--DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (474)
Q Consensus 210 iKlWdl~tg-~~l~tl~--~~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~ 284 (474)
+||||+.-. .++..++ ..+|.+|.+++ ...++++ |=|+|||||+..-++-++||+||...|..++|+|..+.
T Consensus 85 Lrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts---SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~n 161 (311)
T KOG0277|consen 85 LRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTS---SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPN 161 (311)
T ss_pred EEEeccCCCCcchhHHHhhhhheEEeccccccceeEEee---ccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCC
Confidence 999996533 3666665 45899999996 5556665 44899999999999999999999999999999988788
Q ss_pred eEEEEeCCCcEEEEECCC-CceEEeccccCCceEEEEEc-CCCcEEEEEc-CCcEEEEeCC--CcEEEEeccCCCCcCCC
Q 011970 285 KLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFL-YENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDC 359 (474)
Q Consensus 285 ~ll~~~~D~tIkIWDv~t-g~~~~~l~~h~~~v~sv~Fs-pdg~llaS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~ 359 (474)
.+++.|.|++++|||++. |+.+. ...|...+.+..|+ ++-.+++|++ |++||.||++ ...+..|.||...
T Consensus 162 lfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A---- 236 (311)
T KOG0277|consen 162 LFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA---- 236 (311)
T ss_pred eEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE----
Confidence 888889999999999996 55555 67788899999998 8889999999 9999999995 6789999999987
Q ss_pred CeeEEEECCC-CCEEEEEecCCCccccccCCCCeEEEEeCCCC-eEEEEecCCCCCCCCccccCCCCCCccccccccccc
Q 011970 360 NTNNIYITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 437 (474)
Q Consensus 360 ~v~svafSpD-g~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (474)
|+.|.|||- -.+|||+|. |=|+||||.+.+ -|+.+..-|+.
T Consensus 237 -VRkvk~Sph~~~lLaSasY-----------DmT~riw~~~~~ds~~e~~~~HtE------------------------- 279 (311)
T KOG0277|consen 237 -VRKVKFSPHHASLLASASY-----------DMTVRIWDPERQDSAIETVDHHTE------------------------- 279 (311)
T ss_pred -EEEEecCcchhhHhhhccc-----------cceEEecccccchhhhhhhhccce-------------------------
Confidence 799999996 578898877 999999998744 46777777764
Q ss_pred cccccccccCEEEEEEcC-CCCEEEEEcCCCcEEEcc
Q 011970 438 RSTVGEALEDITSLFYDE-ERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 438 ~~~~~~~l~~V~slafSp-Dg~~LaSgs~DgtVklWd 473 (474)
-|..+.||+ ++..+|+.+.|+++.||+
T Consensus 280 ---------Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 280 ---------FVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred ---------EEeccccccccCceeeecccccceeeec
Confidence 777888887 566899999999999997
No 68
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.1e-27 Score=239.65 Aligned_cols=303 Identities=10% Similarity=0.096 Sum_probs=232.4
Q ss_pred hcccccceeecccCCCCCcccccccccccccEEEEEee--ccEEEEeeCCCeEEeeeccccce---eeEeecCCCceEEE
Q 011970 60 FRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRR---ICFLNVSPDEVIRS 134 (474)
Q Consensus 60 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~---l~~l~g~~~~~i~s 134 (474)
|.++-|...+..++....+.-..-.--|...|+=+.|| |.+|||+|.|.|.-+|.+.--.. .+||-| |...|--
T Consensus 196 ldsvsll~Dh~c~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg-h~~~V~y 274 (519)
T KOG0293|consen 196 LDSVSLLSDHFCGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG-HSQPVSY 274 (519)
T ss_pred cchhhhhhhcccCcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec-ccCceEE
Confidence 34455554444444443332111122388999999999 99999999999999999776554 789997 6688999
Q ss_pred EEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEee
Q 011970 135 LFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFD 214 (474)
Q Consensus 135 v~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWd 214 (474)
|.||||..+|.+++. + ..+++||+.+|.+.. ++..++-..+-++++- |||+.+++||.|++|--||
T Consensus 275 i~wSPDdryLlaCg~----~------e~~~lwDv~tgd~~~---~y~~~~~~S~~sc~W~-pDg~~~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGF----D------EVLSLWDVDTGDLRH---LYPSGLGFSVSSCAWC-PDGFRFVTGSPDRTIIMWD 340 (519)
T ss_pred EEECCCCCeEEecCc----h------HheeeccCCcchhhh---hcccCcCCCcceeEEc-cCCceeEecCCCCcEEEec
Confidence 999999999999763 3 358999999999833 4554322345578997 8999999999999999999
Q ss_pred cCCCeEEEEEcCC---cEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe
Q 011970 215 LKNYTMLYSISDK---HVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ 290 (474)
Q Consensus 215 l~tg~~l~tl~~~---~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~ 290 (474)
+ +|+.+....+- .|+++|+++ |..+++. ..|..|+|.+.++..+......+ +.+.+...+ -++...|+.=
T Consensus 341 l-Dgn~~~~W~gvr~~~v~dlait~Dgk~vl~v---~~d~~i~l~~~e~~~dr~lise~-~~its~~iS-~d~k~~LvnL 414 (519)
T KOG0293|consen 341 L-DGNILGNWEGVRDPKVHDLAITYDGKYVLLV---TVDKKIRLYNREARVDRGLISEE-QPITSFSIS-KDGKLALVNL 414 (519)
T ss_pred C-CcchhhcccccccceeEEEEEcCCCcEEEEE---ecccceeeechhhhhhhcccccc-CceeEEEEc-CCCcEEEEEc
Confidence 7 67777777653 499999996 5555554 34889999999998777555433 677787765 4555566667
Q ss_pred CCCcEEEEECCCCceEEeccccCCceEE--EEEc-CCCcEEEEEc-CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEE
Q 011970 291 ENENLQILDVRNAELMEVSRTEFMTPSA--FIFL-YENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIY 365 (474)
Q Consensus 291 ~D~tIkIWDv~tg~~~~~l~~h~~~v~s--v~Fs-pdg~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~sva 365 (474)
.+..|++||++..++++...||...-.- -.|- .+..++|||| |+.|.||+. +|+++.+|.||..- ||.|+
T Consensus 415 ~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~-----vNcVs 489 (519)
T KOG0293|consen 415 QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKT-----VNCVS 489 (519)
T ss_pred ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcce-----eeEEe
Confidence 9999999999988888877777653322 2366 4558999999 999999999 59999999999975 79999
Q ss_pred ECCC-CCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 366 ITSD-QDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 366 fSpD-g~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
++|. -..+||+|. |||||||-..
T Consensus 490 wNP~~p~m~ASasD-----------DgtIRIWg~~ 513 (519)
T KOG0293|consen 490 WNPADPEMFASASD-----------DGTIRIWGPS 513 (519)
T ss_pred cCCCCHHHhhccCC-----------CCeEEEecCC
Confidence 9994 567888776 9999999753
No 69
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1e-26 Score=240.53 Aligned_cols=270 Identities=17% Similarity=0.217 Sum_probs=216.9
Q ss_pred ceEEEEEEeeCCC--EEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC
Q 011970 130 EVIRSLFYNKNND--SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 130 ~~i~sv~fspdg~--~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
+.|.+|.|||..- .-++.| -.+.|.+...-...+++.=|.. . +.++.|- .||++||.|...
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S------------~rvqly~~~~~~~~k~~srFk~--~--v~s~~fR-~DG~LlaaGD~s 89 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS------------VRVQLYSSVTRSVRKTFSRFKD--V--VYSVDFR-SDGRLLAAGDES 89 (487)
T ss_pred CcceeEecCCCCCCceEEecc------------cEEEEEecchhhhhhhHHhhcc--c--eeEEEee-cCCeEEEccCCc
Confidence 6799999999532 223333 3556666555555554444553 2 3389997 699999999999
Q ss_pred CcEEEeecCCCeEEEEE--cCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCC
Q 011970 208 SIYKVFDLKNYTMLYSI--SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl--~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~ 284 (474)
|-|||+|+++-..|..+ |...|..+.|+| +++++++ +++|+.+|+||+.++.....+.+|.+.|++.+++|..+.
T Consensus 90 G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s--~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~h 167 (487)
T KOG0310|consen 90 GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVS--GSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDH 167 (487)
T ss_pred CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEe--cCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCe
Confidence 99999997764455555 457899999998 6666655 477899999999999987799999999999999976555
Q ss_pred eEEEEeCCCcEEEEECCCC-ceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC--CcEEEEeccCCCCcCCCCe
Q 011970 285 KLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR--GELVTSFEDHLLWHPDCNT 361 (474)
Q Consensus 285 ~ll~~~~D~tIkIWDv~tg-~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~--G~ll~tl~gH~~~~~~~~v 361 (474)
.+++||.||+||+||.++. ..+..+ .|..+|..+.|.|.|.++||++-..||+||+. |+++..+..|.-. |
T Consensus 168 ivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~Kt-----V 241 (487)
T KOG0310|consen 168 IVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKT-----V 241 (487)
T ss_pred EEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccce-----E
Confidence 6777899999999999987 444333 47779999999999999999998899999994 6778888878765 7
Q ss_pred eEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccc
Q 011970 362 NNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTV 441 (474)
Q Consensus 362 ~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (474)
.++.+..|++.|.|++- |+.+|++|+.+=|.+..+.=-.
T Consensus 242 TcL~l~s~~~rLlS~sL-----------D~~VKVfd~t~~Kvv~s~~~~~------------------------------ 280 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSL-----------DRHVKVFDTTNYKVVHSWKYPG------------------------------ 280 (487)
T ss_pred EEEEeecCCceEeeccc-----------ccceEEEEccceEEEEeeeccc------------------------------
Confidence 89999999999999876 9999999987777776663322
Q ss_pred cccccCEEEEEEcCCCCEEEEEcCCCcEE
Q 011970 442 GEALEDITSLFYDEERNEIYTGNRHGLVH 470 (474)
Q Consensus 442 ~~~l~~V~slafSpDg~~LaSgs~DgtVk 470 (474)
+|.+++.|||++.+|-|-.||.+-
T Consensus 281 -----pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 281 -----PVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred -----ceeeEEecCCCceEEEecccceee
Confidence 899999999999999999999874
No 70
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=1.6e-26 Score=246.48 Aligned_cols=279 Identities=14% Similarity=0.214 Sum_probs=220.6
Q ss_pred cccccceeecccCCCCCcccccccccccccEEEEEee-ccEEEEeeCCCeEEeeeccccceee--EeecCCCceEEE-EE
Q 011970 61 RNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRIC--FLNVSPDEVIRS-LF 136 (474)
Q Consensus 61 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s-~~~las~s~dgtiklW~~~tg~~l~--~l~g~~~~~i~s-v~ 136 (474)
.+++|-.+...|+.-+ +.+++- +-.++++|.|||+|+|+-.-++.+- ++.+ |.+.|.. +.
T Consensus 2 ~~Y~ls~~l~gH~~DV---------------r~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~-~~g~i~~~i~ 65 (745)
T KOG0301|consen 2 PQYKLSHELEGHKSDV---------------RAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEG-PKGFIANSIC 65 (745)
T ss_pred CcceeEEEeccCccch---------------heeEecCCeEEeecCCCCceeeeeccCcccccceeccc-Ccceeeccce
Confidence 3456666777776544 333333 4679999999999999976566554 4555 5577766 88
Q ss_pred Eee-CCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeec
Q 011970 137 YNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL 215 (474)
Q Consensus 137 fsp-dg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl 215 (474)
|-+ |+..|.++ +.| .++-+|..-++.+.. .|++|+ .-|-+++-. .++. |.|||.|.|+|+|-
T Consensus 66 y~e~~~~~l~~g----~~D------~~i~v~~~~~~~P~~--~LkgH~--snVC~ls~~-~~~~-~iSgSWD~TakvW~- 128 (745)
T KOG0301|consen 66 YAESDKGRLVVG----GMD------TTIIVFKLSQAEPLY--TLKGHK--SNVCSLSIG-EDGT-LISGSWDSTAKVWR- 128 (745)
T ss_pred eccccCcceEee----ccc------ceEEEEecCCCCchh--hhhccc--cceeeeecC-CcCc-eEecccccceEEec-
Confidence 864 55557764 466 677788877777655 355553 344577754 4664 99999999999996
Q ss_pred CCCeEEEEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCC
Q 011970 216 KNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE 293 (474)
Q Consensus 216 ~tg~~l~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~ 293 (474)
.|+|.+++.+ ..||+|++=|.+.++++ +.|++||||. .|+++++|.+|.+-|+.+++.+ +..+|+++.||
T Consensus 129 -~~~l~~~l~gH~asVWAv~~l~e~~~vTg---saDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~--~~~flScsNDg 200 (745)
T KOG0301|consen 129 -IGELVYSLQGHTASVWAVASLPENTYVTG---SADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLD--DSHFLSCSNDG 200 (745)
T ss_pred -chhhhcccCCcchheeeeeecCCCcEEec---cCcceeeecc--CCchhhhhccchhheeeeEEec--CCCeEeecCCc
Confidence 6788888875 46999999998888876 6699999998 5899999999999999999974 56899999999
Q ss_pred cEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCE
Q 011970 294 NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDL 372 (474)
Q Consensus 294 tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~ 372 (474)
.||+||+ +|+++....||+..++++...+++++++|.+ |+|+++|+.. +|++.++-.. ..||++.+-++|++
T Consensus 201 ~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~lPt-----tsiWsa~~L~NgDI 273 (745)
T KOG0301|consen 201 SIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITLPT-----TSIWSAKVLLNGDI 273 (745)
T ss_pred eEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEecCc-----cceEEEEEeeCCCE
Confidence 9999998 9999999999999999999888888999988 9999999965 9999887333 23899999999998
Q ss_pred EEEEecCCCccccccCCCCeEEEEeCC
Q 011970 373 IISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 373 LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
++-+| ||-||||...
T Consensus 274 vvg~S------------DG~VrVfT~~ 288 (745)
T KOG0301|consen 274 VVGGS------------DGRVRVFTVD 288 (745)
T ss_pred EEecc------------CceEEEEEec
Confidence 77543 9999999864
No 71
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.9e-27 Score=252.79 Aligned_cols=241 Identities=13% Similarity=0.164 Sum_probs=194.4
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCC--------------------------------C---e---------
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN--------------------------------Y---T--------- 219 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t--------------------------------g---~--------- 219 (474)
|-+.|++..|| +|||+||+|++|+.||||-+.. . +
T Consensus 266 h~gaIw~mKFS-~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 266 HKGAIWAMKFS-HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred cCCcEEEEEeC-CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 46778899998 7999999999999999998765 0 0
Q ss_pred --E--------------EEEE--cCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEec
Q 011970 220 --M--------------LYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 281 (474)
Q Consensus 220 --~--------------l~tl--~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~ 281 (474)
+ ++.+ |...|.+|.+|..+.||++ |.|+|||||++..-+||++|. |..-|.+|+|.|-
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSS---SMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPv 420 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSS---SMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPV 420 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEec---cccccEEeecCCCcceeeEEe-cCCeeEEEEeccc
Confidence 0 0001 1246999999999999986 779999999999999999998 5689999999999
Q ss_pred CCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCc-EEEEeccCCC---Cc
Q 011970 282 FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE-LVTSFEDHLL---WH 356 (474)
Q Consensus 282 ~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~-ll~tl~gH~~---~~ 356 (474)
|+.++++|+-|+-||||++...+-.....-| .-|+|++|+|||+..+-|+ +|.+++++.+|. +++.+.=|.. -.
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~ 499 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK 499 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence 9999999999999999999988876654444 6899999999999999999 999999999765 4444431111 00
Q ss_pred CCCCeeEEEECCCC--CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccc
Q 011970 357 PDCNTNNIYITSDQ--DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 434 (474)
Q Consensus 357 ~~~~v~svafSpDg--~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 434 (474)
..-.|..+.|.|-. ++|++. +|..|||.|..+-+.+.+|+|+.+. +
T Consensus 500 ~~~rITG~Q~~p~~~~~vLVTS------------nDSrIRI~d~~~~~lv~KfKG~~n~----------~---------- 547 (712)
T KOG0283|consen 500 QGKRITGLQFFPGDPDEVLVTS------------NDSRIRIYDGRDKDLVHKFKGFRNT----------S---------- 547 (712)
T ss_pred cCceeeeeEecCCCCCeEEEec------------CCCceEEEeccchhhhhhhcccccC----------C----------
Confidence 00127788888744 377763 4999999999888999999998851 0
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 435 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 435 ~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.=.+..|++||+.|++|++|.-|.||++
T Consensus 548 ------------SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 548 ------------SQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred ------------cceeeeEccCCCEEEEeecCceEEEEeC
Confidence 2235799999999999999999999985
No 72
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.8e-26 Score=242.74 Aligned_cols=255 Identities=13% Similarity=0.106 Sum_probs=219.1
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcCC
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISPG 237 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~---~~~V~~vafSpg 237 (474)
..+.+|+-.+|+. ..|+..+ ...+.+|.++ ++|++||.|-.+|+|.|||.++.+.+.++. ...|-+++++ +
T Consensus 197 ~~vylW~~~s~~v---~~l~~~~-~~~vtSv~ws-~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~-~ 270 (484)
T KOG0305|consen 197 QSVYLWSASSGSV---TELCSFG-EELVTSVKWS-PDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN-S 270 (484)
T ss_pred ceEEEEecCCCce---EEeEecC-CCceEEEEEC-CCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc-C
Confidence 6889999999985 2356552 3567799998 799999999999999999999888776664 4579999999 3
Q ss_pred ceEEEEecCCCCccEEEEecCCCeEEEE-EeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCce
Q 011970 238 IMLLIFNRSSSHVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTP 316 (474)
Q Consensus 238 ~~la~~s~~s~D~tIkLWdi~tG~~L~t-l~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v 316 (474)
..+.++ +.|+.|..+|+..++.+.. +.+|.+.|-.+.|+ +++.++++|+.|+.+.|||....+.+..+..|...|
T Consensus 271 ~~lssG---sr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws-~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAV 346 (484)
T KOG0305|consen 271 SVLSSG---SRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS-PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAV 346 (484)
T ss_pred ceEEEe---cCCCcEEEEEEecchhhhhhhhcccceeeeeEEC-CCCCeeccCCCccceEeccCCCccccEEEeccceee
Confidence 334443 5689999999999988776 88999999999997 678888889999999999998888888999999999
Q ss_pred EEEEEcC-CCcEEEEEc---CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 011970 317 SAFIFLY-ENQLFLTFR---NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 391 (474)
Q Consensus 317 ~sv~Fsp-dg~llaS~s---D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg 391 (474)
.+++|+| ...+||+|. |++|++||. +|+++.+...... |-++.|+|..+-|+++-. -.++
T Consensus 347 KA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ------VcsL~Wsk~~kEi~sthG---------~s~n 411 (484)
T KOG0305|consen 347 KALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQ------VCSLIWSKKYKELLSTHG---------YSEN 411 (484)
T ss_pred eEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCc------eeeEEEcCCCCEEEEecC---------CCCC
Confidence 9999997 677888874 999999999 5999998875544 789999999987777642 3477
Q ss_pred eEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEE
Q 011970 392 SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 471 (474)
Q Consensus 392 tIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVkl 471 (474)
.|.||+..+=+.++.+.||+. .|..++.||||..|+||+.|+|+|+
T Consensus 412 ~i~lw~~ps~~~~~~l~gH~~----------------------------------RVl~la~SPdg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 412 QITLWKYPSMKLVAELLGHTS----------------------------------RVLYLALSPDGETIVTGAADETLRF 457 (484)
T ss_pred cEEEEeccccceeeeecCCcc----------------------------------eeEEEEECCCCCEEEEecccCcEEe
Confidence 899999999999999999996 8999999999999999999999999
Q ss_pred ccC
Q 011970 472 WSN 474 (474)
Q Consensus 472 Wd~ 474 (474)
|+.
T Consensus 458 w~~ 460 (484)
T KOG0305|consen 458 WNL 460 (484)
T ss_pred ccc
Confidence 973
No 73
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=2.1e-26 Score=232.62 Aligned_cols=251 Identities=15% Similarity=0.181 Sum_probs=199.6
Q ss_pred EEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEc-CCc
Q 011970 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-PGI 238 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafS-pg~ 238 (474)
.+.|+|++.=.+.+...-|. |-.||-+|.-. ++.+.+|+.||++++||+ .|++.+++. .+.|.+++.- ++.
T Consensus 84 ~leIEYv~~~~aP~pl~~~~--hdDWVSsv~~~---~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~ 157 (423)
T KOG0313|consen 84 ILEIEYVEAITAPKPLQCFL--HDDWVSSVKGA---SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNS 157 (423)
T ss_pred eeEEEEEEecCCCCcccccc--chhhhhhhccc---CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCC
Confidence 66778875433322212233 34677787653 689999999999999996 577777665 5678877765 544
Q ss_pred e---EEEEecCCCCccEEEEecCCCeEE----EEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC---------
Q 011970 239 M---LLIFNRSSSHVPLKILSIEDGTVL----KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--------- 302 (474)
Q Consensus 239 ~---la~~s~~s~D~tIkLWdi~tG~~L----~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t--------- 302 (474)
. ++++ +.|+|++||-++-|+.. +.-.||-..|.+|+.. +++.++++++.|.+|+||++.+
T Consensus 158 ~~~~fvsa---s~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~-~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~ 233 (423)
T KOG0313|consen 158 SSCLFVSA---SMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVD-SSGTRFCSGSWDTMLKIWSVETDEEDELESS 233 (423)
T ss_pred ccceEEEe---cCCceEEEEEecCchhhhhHHhHhcccccceeEEEec-CCCCeEEeecccceeeecccCCCcccccccc
Confidence 3 6665 77999999999888653 3334899999999975 6788999999999999999332
Q ss_pred ----------------CceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEE
Q 011970 303 ----------------AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNI 364 (474)
Q Consensus 303 ----------------g~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~sv 364 (474)
+..+-++.||...|++|.|++ ...+.|+| |.|||.||+. |.++.++.+... .++|
T Consensus 234 s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks------l~~i 306 (423)
T KOG0313|consen 234 SNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS------LNCI 306 (423)
T ss_pred chhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcc------eeEe
Confidence 224567899999999999999 44566777 9999999995 999999988765 5899
Q ss_pred EECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe---EEEEecCCCCCCCCccccCCCCCCccccccccccccccc
Q 011970 365 YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK---CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTV 441 (474)
Q Consensus 365 afSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~---cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (474)
..+|..++||+||. |.-|||||-.+|. ..++|.||++
T Consensus 307 ~~~~~~~Ll~~gss-----------dr~irl~DPR~~~gs~v~~s~~gH~n----------------------------- 346 (423)
T KOG0313|consen 307 SYSPLSKLLASGSS-----------DRHIRLWDPRTGDGSVVSQSLIGHKN----------------------------- 346 (423)
T ss_pred ecccccceeeecCC-----------CCceeecCCCCCCCceeEEeeecchh-----------------------------
Confidence 99999999999886 9999999998764 3589999997
Q ss_pred cccccCEEEEEEcCCCC-EEEEEcCCCcEEEccC
Q 011970 442 GEALEDITSLFYDEERN-EIYTGNRHGLVHVWSN 474 (474)
Q Consensus 442 ~~~l~~V~slafSpDg~-~LaSgs~DgtVklWd~ 474 (474)
+|.+|-++|... +|+|||.|+++||||.
T Consensus 347 -----wVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 347 -----WVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred -----hhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 999999999875 5999999999999984
No 74
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=4.5e-26 Score=225.76 Aligned_cols=292 Identities=13% Similarity=0.191 Sum_probs=223.8
Q ss_pred eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec------------cCCCCCccceeee--ccc
Q 011970 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR------------RGKPDSGFALFES--ESL 185 (474)
Q Consensus 120 ~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~------------~G~~~~~~~lf~~--~~~ 185 (474)
.-++|.- |..+.|+-+|||||..+||+|+|. .|+|-|++ .|...+.-|+-.. +|.
T Consensus 104 Et~ylt~-HK~~cR~aafs~DG~lvATGsaD~----------SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~ 172 (430)
T KOG0640|consen 104 ETKYLTS-HKSPCRAAAFSPDGSLVATGSADA----------SIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV 172 (430)
T ss_pred ceEEEee-cccceeeeeeCCCCcEEEccCCcc----------eEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc
Confidence 4567774 889999999999999999977554 66677764 3333333233322 355
Q ss_pred cCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe---EEEEEc-CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCC
Q 011970 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSIS-DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG 260 (474)
Q Consensus 186 ~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~---~l~tl~-~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG 260 (474)
.-+..++|. |-..+|+|||.|+||||||...-. -.+.++ .+.|.+|.|+| |..|+++ -.+-+++|+|++|-
T Consensus 173 devn~l~FH-Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvg---TdHp~~rlYdv~T~ 248 (430)
T KOG0640|consen 173 DEVNDLDFH-PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVG---TDHPTLRLYDVNTY 248 (430)
T ss_pred Ccccceeec-chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEe---cCCCceeEEeccce
Confidence 666789998 788999999999999999986433 234455 37899999999 6666665 33567999999999
Q ss_pred eEEEEEe---ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc-ccC-CceEEEEEcCCCcEEEEEc-CC
Q 011970 261 TVLKVFY---HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-TEF-MTPSAFIFLYENQLFLTFR-NR 334 (474)
Q Consensus 261 ~~L~tl~---~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~-~h~-~~v~sv~Fspdg~llaS~s-D~ 334 (474)
||...-+ +|...|..|.+++ .+...++++.||.|||||=-+++|++++. .|. ..|-+..|..+|++++|++ |.
T Consensus 249 QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS 327 (430)
T KOG0640|consen 249 QCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS 327 (430)
T ss_pred eEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc
Confidence 9987665 6888999999984 45566668999999999999999999863 354 4788899999999999999 99
Q ss_pred cEEEEeC-CCcEEEEeccCCC--CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe-cCC
Q 011970 335 TVAVWNF-RGELVTSFEDHLL--WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NAT 410 (474)
Q Consensus 335 tIklWd~-~G~ll~tl~gH~~--~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~gH 410 (474)
+||||.+ +|.+++++.|-.. .+. - -....|....+|++.-.. ..+.+--||..|+.-++.+ -||
T Consensus 328 ~vkLWEi~t~R~l~~YtGAg~tgrq~-~-rtqAvFNhtEdyVl~pDE----------as~slcsWdaRtadr~~l~slgH 395 (430)
T KOG0640|consen 328 TVKLWEISTGRMLKEYTGAGTTGRQK-H-RTQAVFNHTEDYVLFPDE----------ASNSLCSWDARTADRVALLSLGH 395 (430)
T ss_pred eeeeeeecCCceEEEEecCCcccchh-h-hhhhhhcCccceEEcccc----------ccCceeeccccchhhhhhcccCC
Confidence 9999999 5999998887521 100 0 123447777777776432 1466778999888766655 478
Q ss_pred CCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 411 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
++ .|..+.-||.+.-..|+|.|-.+|+|-
T Consensus 396 n~----------------------------------a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 396 NG----------------------------------AVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CC----------------------------------CceEEEeCCCCCceeeecccceeeeee
Confidence 76 788899999999999999999999994
No 75
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=1.7e-25 Score=225.15 Aligned_cols=293 Identities=16% Similarity=0.108 Sum_probs=232.8
Q ss_pred eeecccCCCCCcccccccccccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEE
Q 011970 67 EEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSL 144 (474)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~L 144 (474)
-.+++++.+..+ -.+ -|..+|.++.|+ |.+||+|.-+|.+++|...||..-+.|-. .-+-|-=+.+.|-+..|
T Consensus 89 flW~~~~ge~~~--elt--gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~dieWl~WHp~a~il 163 (399)
T KOG0296|consen 89 FLWDISTGEFAG--ELT--GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVEDIEWLKWHPRAHIL 163 (399)
T ss_pred EEEEccCCccee--Eec--CCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec-ccCceEEEEecccccEE
Confidence 345777776322 122 388899999999 99999999999999999999999998864 33446778999999998
Q ss_pred EEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEE
Q 011970 145 ITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI 224 (474)
Q Consensus 145 is~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl 224 (474)
+.++ .| ..+..|.|..+..- ++|.. |......=+|. ||||.++++..|+||++||++||+.++.+
T Consensus 164 lAG~----~D------GsvWmw~ip~~~~~---kv~~G-h~~~ct~G~f~-pdGKr~~tgy~dgti~~Wn~ktg~p~~~~ 228 (399)
T KOG0296|consen 164 LAGS----TD------GSVWMWQIPSQALC---KVMSG-HNSPCTCGEFI-PDGKRILTGYDDGTIIVWNPKTGQPLHKI 228 (399)
T ss_pred Eeec----CC------CcEEEEECCCccee---eEecC-CCCCccccccc-CCCceEEEEecCceEEEEecCCCceeEEe
Confidence 8754 55 68888999884322 35553 33333345898 78999999999999999999999999998
Q ss_pred cC---CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEe--------ecCcceeEEEEEecCCC-eEEE-EeC
Q 011970 225 SD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY--------HLLHRNKKVDFIEQFNE-KLLV-KQE 291 (474)
Q Consensus 225 ~~---~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~--------~h~~~v~~V~F~~~~~~-~ll~-~~~ 291 (474)
.+ ..-..+.++-.+.+++. ++.++.+++-+..+|+.+..++ .+.+.+.+|.|++..-. .|++ |+.
T Consensus 229 ~~~e~~~~~~~~~~~~~~~~~~--g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~v 306 (399)
T KOG0296|consen 229 TQAEGLELPCISLNLAGSTLTK--GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSV 306 (399)
T ss_pred cccccCcCCccccccccceeEe--ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccc
Confidence 73 34667888854444443 3558899999999999999888 45566778888743322 2333 689
Q ss_pred CCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCC
Q 011970 292 NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD 369 (474)
Q Consensus 292 D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD 369 (474)
||+|-|||..+..+..... |...|..+.|.+ ..+|++++ ||+|++||.+ |+|+.++.||+.. |...+++||
T Consensus 307 dG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~-----Il~f~ls~~ 379 (399)
T KOG0296|consen 307 DGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG-----ILDFALSPQ 379 (399)
T ss_pred cceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchh-----eeEEEEcCC
Confidence 9999999999988877765 556799999999 66777777 9999999996 9999999999987 689999999
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 370 QDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 370 g~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
+++++++|. |++.+++++.
T Consensus 380 ~~~vvT~s~-----------D~~a~VF~v~ 398 (399)
T KOG0296|consen 380 KRLVVTVSD-----------DNTALVFEVP 398 (399)
T ss_pred CcEEEEecC-----------CCeEEEEecC
Confidence 999999987 9999999864
No 76
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.7e-27 Score=247.17 Aligned_cols=229 Identities=15% Similarity=0.235 Sum_probs=199.6
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCC-Ce-----EEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCC
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKN-YT-----MLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG 260 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~t-g~-----~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG 260 (474)
.+.-|.|+|++|-+|+.|++|++|+... .. ++.++. .+||.+++..- +..|+++ |+|-|||+|+.+.+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~---SsDtTVK~W~~~~~ 105 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISA---SSDTTVKVWNAHKD 105 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEe---cCCceEEEeecccC
Confidence 4556678999999999999999999753 11 344553 47999999995 5566654 66899999999988
Q ss_pred --eEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCce--E--------Eecc-ccCCceEEEEEcCCCcE
Q 011970 261 --TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL--M--------EVSR-TEFMTPSAFIFLYENQL 327 (474)
Q Consensus 261 --~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~--~--------~~l~-~h~~~v~sv~Fspdg~l 327 (474)
-|+.++..|.+.|.+++..++.++..++||-|+.|.|||+.+|.. + .-+. |+...++++|-.+.|..
T Consensus 106 ~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 106 NTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred cchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 689999999999999999888888888899999999999998832 2 1234 88999999999999999
Q ss_pred EEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 011970 328 FLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 405 (474)
Q Consensus 328 laS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~ 405 (474)
+++|+ .+-+++||.+ ++.+..|.||+.- |+.+-.++||..++|+|. ||||||||+...+|++
T Consensus 186 ivsGgtek~lr~wDprt~~kimkLrGHTdN-----Vr~ll~~dDGt~~ls~sS-----------DgtIrlWdLgqQrCl~ 249 (735)
T KOG0308|consen 186 IVSGGTEKDLRLWDPRTCKKIMKLRGHTDN-----VRVLLVNDDGTRLLSASS-----------DGTIRLWDLGQQRCLA 249 (735)
T ss_pred EEecCcccceEEeccccccceeeeeccccc-----eEEEEEcCCCCeEeecCC-----------CceEEeeeccccceee
Confidence 99999 9999999995 8989999999974 899999999999999875 9999999999999999
Q ss_pred EecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEE
Q 011970 406 KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 471 (474)
Q Consensus 406 tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVkl 471 (474)
|+..|.. .||++.-+|+=+.+|+|++||.|..
T Consensus 250 T~~vH~e----------------------------------~VWaL~~~~sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 250 TYIVHKE----------------------------------GVWALQSSPSFTHVYSGGRDGNIYR 281 (735)
T ss_pred eEEeccC----------------------------------ceEEEeeCCCcceEEecCCCCcEEe
Confidence 9999996 8999999999999999999999865
No 77
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8.7e-25 Score=209.40 Aligned_cols=298 Identities=11% Similarity=0.173 Sum_probs=228.9
Q ss_pred ceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceee-eEEEEeEeccCCCCCccc---eeee--ccccCceEEE
Q 011970 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKC-RSTKIEYIRRGKPDSGFA---LFES--ESLKWPGFVE 192 (474)
Q Consensus 119 ~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~-~~~~iw~i~~G~~~~~~~---lf~~--~~~~~~~~V~ 192 (474)
+++.+|. ....|++|+|.|+|...|.+| .. .++++ ..-.+-+++.+..-.-+| +|.. -|.+.+..++
T Consensus 24 ~~i~~l~--dsqairav~fhp~g~lyavgs----ns-kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 24 EAINILE--DSQAIRAVAFHPAGGLYAVGS----NS-KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred EEEEEec--chhheeeEEecCCCceEEecc----CC-ceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEE
Confidence 3566775 456799999999999888755 33 12221 111233444443322222 4443 1456677899
Q ss_pred EeCCCCeEEEEecCCCcEEEeecCCCeE-------EEEEcCCcEEEEEEc--C--CceEEEEecCCCCccEEEEecCCCe
Q 011970 193 FDDVNGKVLTYSAQDSIYKVFDLKNYTM-------LYSISDKHVQEIKIS--P--GIMLLIFNRSSSHVPLKILSIEDGT 261 (474)
Q Consensus 193 Fs~~nGk~LaS~s~D~tiKlWdl~tg~~-------l~tl~~~~V~~vafS--p--g~~la~~s~~s~D~tIkLWdi~tG~ 261 (474)
+| |+|++||+||.|++||+--.+.-+| ....++..|++++|- | ++.|++++ +.+|..|.+=|-.+|+
T Consensus 97 ws-~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~-gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 97 WS-PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA-GAGDCKIYITDCGRGQ 174 (350)
T ss_pred ec-CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec-CCCcceEEEeecCCCC
Confidence 98 7999999999999999986654443 345667899999998 3 56666554 3558999999999999
Q ss_pred EEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccc-------cCCceEEEEEcCCCcEEEEEc-C
Q 011970 262 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-------EFMTPSAFIFLYENQLFLTFR-N 333 (474)
Q Consensus 262 ~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~-------h~~~v~sv~Fspdg~llaS~s-D 333 (474)
.++.+.||.+++.++.-- .|-.+++++.|+|||.||++-..|+.++.. +...|.+|+.-|.|++|+|+- |
T Consensus 175 ~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d 252 (350)
T KOG0641|consen 175 GFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD 252 (350)
T ss_pred cceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCC
Confidence 999999999999888743 356677789999999999999999988643 235788999999999999998 9
Q ss_pred CcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCC
Q 011970 334 RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 412 (474)
Q Consensus 334 ~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~ 412 (474)
....|+|++ |..++.|.-|+.- |++|.|||--.||.++|. |..|||=|+ +|.+-+.|.
T Consensus 253 ssc~lydirg~r~iq~f~phsad-----ir~vrfsp~a~yllt~sy-----------d~~ikltdl-qgdla~el~---- 311 (350)
T KOG0641|consen 253 SSCMLYDIRGGRMIQRFHPHSAD-----IRCVRFSPGAHYLLTCSY-----------DMKIKLTDL-QGDLAHELP---- 311 (350)
T ss_pred CceEEEEeeCCceeeeeCCCccc-----eeEEEeCCCceEEEEecc-----------cceEEEeec-ccchhhcCc----
Confidence 999999997 8899999999876 799999999999999987 999999997 465433221
Q ss_pred CCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 413 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
...|+|+-+.+-.+-|.|..-..+|.|.|.|+.||-
T Consensus 312 -------------------------~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 312 -------------------------IMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred -------------------------eEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 122334444677899999999999999999999994
No 78
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=9.1e-25 Score=212.52 Aligned_cols=281 Identities=11% Similarity=0.129 Sum_probs=230.2
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEE
Q 011970 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 202 (474)
Q Consensus 123 ~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~La 202 (474)
.+++ |...|.||+||-+|..|+++| .| +++++|.+..+++....... +|...+..+.++|++-..+|
T Consensus 15 ~~~~-~~~~v~Sv~wn~~g~~lasgs----~d------ktv~v~n~e~~r~~~~~~~~--gh~~svdql~w~~~~~d~~a 81 (313)
T KOG1407|consen 15 ELQG-HVQKVHSVAWNCDGTKLASGS----FD------KTVSVWNLERDRFRKELVYR--GHTDSVDQLCWDPKHPDLFA 81 (313)
T ss_pred Hhhh-hhhcceEEEEcccCceeeecc----cC------CceEEEEecchhhhhhhccc--CCCcchhhheeCCCCCcceE
Confidence 3454 667899999999999999955 56 79999999888653321111 23445567899999999999
Q ss_pred EecCCCcEEEeecCCCeEEEEEcC-CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEe
Q 011970 203 YSAQDSIYKVFDLKNYTMLYSISD-KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE 280 (474)
Q Consensus 203 S~s~D~tiKlWdl~tg~~l~tl~~-~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~ 280 (474)
+++.|++|++||...++|...+.. ..---+.+|| |+.++.+ +.|.-|-..|+++-+..++.+. ...+..+.|.
T Consensus 82 tas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~---~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~- 156 (313)
T KOG1407|consen 82 TASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVG---NKDDRITFIDARTYKIVNEEQF-KFEVNEISWN- 156 (313)
T ss_pred EecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEe---cCcccEEEEEecccceeehhcc-cceeeeeeec-
Confidence 999999999999999999988763 2333577886 7777766 3366788899988888776653 2456778887
Q ss_pred cCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCC
Q 011970 281 QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPD 358 (474)
Q Consensus 281 ~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~ 358 (474)
.+|..+......|+|.|...-.-+.++.++.|.....+|.|+|+|++||+|+ |-.+.|||++ --|++.|.-|.-+
T Consensus 157 ~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp--- 233 (313)
T KOG1407|consen 157 NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP--- 233 (313)
T ss_pred CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc---
Confidence 5677777788889999999999999999999999999999999999999999 9999999995 8899999987654
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccccc
Q 011970 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 438 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (474)
|+.|.||-||++|||||. |..|-|=+++||.-+..++.-.
T Consensus 234 --VRTlSFS~dg~~lASaSE-----------Dh~IDIA~vetGd~~~eI~~~~--------------------------- 273 (313)
T KOG1407|consen 234 --VRTLSFSHDGRMLASASE-----------DHFIDIAEVETGDRVWEIPCEG--------------------------- 273 (313)
T ss_pred --eEEEEeccCcceeeccCc-----------cceEEeEecccCCeEEEeeccC---------------------------
Confidence 899999999999999876 9999999999999999986433
Q ss_pred ccccccccCEEEEEEcCCCCEEEEEcCC---------CcEEEc
Q 011970 439 STVGEALEDITSLFYDEERNEIYTGNRH---------GLVHVW 472 (474)
Q Consensus 439 ~~~~~~l~~V~slafSpDg~~LaSgs~D---------gtVklW 472 (474)
...+|||+|....||-+..| |+||+.
T Consensus 274 --------~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 274 --------PTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred --------CceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 67899999999999977654 567764
No 79
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.4e-24 Score=211.82 Aligned_cols=274 Identities=15% Similarity=0.160 Sum_probs=211.6
Q ss_pred CceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecC--
Q 011970 129 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-- 206 (474)
Q Consensus 129 ~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~-- 206 (474)
...|.+|.|+++|+.|+++| .+| +++|+|..+|+...++.-... -+.-+.|-.++. .+..+|.
T Consensus 14 ~~~i~sl~fs~~G~~litss---~dD-------sl~LYd~~~g~~~~ti~skky----G~~~~~Fth~~~-~~i~sStk~ 78 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSS---EDD-------SLRLYDSLSGKQVKTINSKKY----GVDLACFTHHSN-TVIHSSTKE 78 (311)
T ss_pred CCceeEEEecCCCCEEEEec---CCC-------eEEEEEcCCCceeeEeecccc----cccEEEEecCCc-eEEEccCCC
Confidence 35699999999999999865 344 999999999998554332222 134678875544 4455555
Q ss_pred CCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCC
Q 011970 207 DSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 283 (474)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~ 283 (474)
|.|||.=+|.+.+.++.+.+ +.|.++..|| +.+++++ +.|++|||||++.-+|..-+.- ..-.-++|. |.|
T Consensus 79 d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~---S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfD-p~G 152 (311)
T KOG1446|consen 79 DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSS---SLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFD-PEG 152 (311)
T ss_pred CCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEec---ccCCeEEeeEecCCCCceEEec--CCCcceeEC-CCC
Confidence 99999999999999999875 5799999999 7777765 6699999999998888766652 223445664 556
Q ss_pred CeEEEEeCCCcEEEEECCCC--ceEEec---cccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC-CCcEEEEeccCCCCc
Q 011970 284 EKLLVKQENENLQILDVRNA--ELMEVS---RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWH 356 (474)
Q Consensus 284 ~~ll~~~~D~tIkIWDv~tg--~~~~~l---~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~~ 356 (474)
-.+|++...+.|||+|+++- ...+++ .+-......+-|||||+.++-+. .+.+.|-|. +|..+.+|++|...-
T Consensus 153 LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~ 232 (311)
T KOG1446|consen 153 LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG 232 (311)
T ss_pred cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC
Confidence 66666766669999999973 233332 23345677899999999998887 889999998 899999999998742
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC-CCCCCCCccccCCCCCCccccccccc
Q 011970 357 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLNKSS 435 (474)
Q Consensus 357 ~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (474)
. .--+..|+|||+++++|+. ||+|.+|++.||+.++.++| |..
T Consensus 233 ~--~~~~a~ftPds~Fvl~gs~-----------dg~i~vw~~~tg~~v~~~~~~~~~----------------------- 276 (311)
T KOG1446|consen 233 N--LPLSATFTPDSKFVLSGSD-----------DGTIHVWNLETGKKVAVLRGPNGG----------------------- 276 (311)
T ss_pred C--cceeEEECCCCcEEEEecC-----------CCcEEEEEcCCCcEeeEecCCCCC-----------------------
Confidence 1 1247889999999999876 99999999999999999999 443
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEc
Q 011970 436 YIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 472 (474)
Q Consensus 436 ~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklW 472 (474)
.+..+-|+|---++||++. .+-+|
T Consensus 277 -----------~~~~~~fnP~~~mf~sa~s--~l~fw 300 (311)
T KOG1446|consen 277 -----------PVSCVRFNPRYAMFVSASS--NLVFW 300 (311)
T ss_pred -----------CccccccCCceeeeeecCc--eEEEE
Confidence 6778889999998988764 34444
No 80
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=4.5e-26 Score=235.53 Aligned_cols=290 Identities=13% Similarity=0.119 Sum_probs=231.0
Q ss_pred eecccCCCCCcccccccccccccEEEEEee---ccEEEEeeCCCeEEeeeccc-cceeeEeecCCCceEEEEEEeeCCCE
Q 011970 68 EYDTHDPKGHCPFVLPFLMKRTKVIEIVAA---RDIVFALAHSGVCAAFSRET-NRRICFLNVSPDEVIRSLFYNKNNDS 143 (474)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s---~~~las~s~dgtiklW~~~t-g~~l~~l~g~~~~~i~sv~fspdg~~ 143 (474)
.+.++-|+-..+. .+. |+..|.+|-+. +-+|+|++.|+.|+||++-. ++|++|+.| |...|+++.||++|..
T Consensus 197 ~~rc~~Pkk~~~~-~~g--H~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-H~k~Vrd~~~s~~g~~ 272 (503)
T KOG0282|consen 197 EERCYLPKKLSHN-LSG--HTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-HRKPVRDASFNNCGTS 272 (503)
T ss_pred cceeeccHhheee-ccC--CccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc-chhhhhhhhccccCCe
Confidence 4455555555433 333 78888888887 89999999999999999876 999999997 8899999999999999
Q ss_pred EEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCC-eEEEEecCCCcEEEeecCCCeEEE
Q 011970 144 LITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLY 222 (474)
Q Consensus 144 Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG-k~LaS~s~D~tiKlWdl~tg~~l~ 222 (474)
+.|+| .| +.+++||+.+|++... |+.+ .-|..|.|. ||+ .++..|..|+.|+.||+.+|+.++
T Consensus 273 fLS~s----fD------~~lKlwDtETG~~~~~---f~~~--~~~~cvkf~-pd~~n~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 273 FLSAS----FD------RFLKLWDTETGQVLSR---FHLD--KVPTCVKFH-PDNQNIFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred eeeee----cc------eeeeeeccccceEEEE---EecC--CCceeeecC-CCCCcEEEEecCCCcEEEEeccchHHHH
Confidence 99976 77 8999999999998542 4443 345689998 565 889999999999999999999776
Q ss_pred EEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEe-ecCcceeEEEEEecCCCeEEEEeCCCcEEEE
Q 011970 223 SIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQIL 298 (474)
Q Consensus 223 tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIW 298 (474)
..- -..|.+|.|=| |..++++ ++|++++||+...+-.++-.. .+.|...+|.-. |++..+++-+.|+.|-|+
T Consensus 337 eYd~hLg~i~~i~F~~~g~rFiss---SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~-P~~~~~~aQs~dN~i~if 412 (503)
T KOG0282|consen 337 EYDRHLGAILDITFVDEGRRFISS---SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLH-PNGKWFAAQSMDNYIAIF 412 (503)
T ss_pred HHHhhhhheeeeEEccCCceEeee---ccCccEEEEEcCCCccchhhcchhhccCcceecC-CCCCeehhhccCceEEEE
Confidence 553 35799999998 5555554 668999999999887776544 456777788866 445555555799999999
Q ss_pred ECCCCc---eEEeccccCCceE--EEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCC-
Q 011970 299 DVRNAE---LMEVSRTEFMTPS--AFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ- 370 (474)
Q Consensus 299 Dv~tg~---~~~~l~~h~~~v~--sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg- 370 (474)
.+...- ..+.+.||...-+ .+.|||||.+|+||+ ||.+-+||.. -+++..|..|... +..+.|.|.-
T Consensus 413 s~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~-----ci~v~wHP~e~ 487 (503)
T KOG0282|consen 413 STVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQP-----CIGVDWHPVEP 487 (503)
T ss_pred ecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcc-----eEEEEecCCCc
Confidence 865432 2356788875544 567999999999998 9999999995 8899999999776 5689999964
Q ss_pred CEEEEEecCCCccccccCCCCeEEEEe
Q 011970 371 DLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 371 ~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
..+|+++. ||.||+||
T Consensus 488 Skvat~~w-----------~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGW-----------DGLIKIWD 503 (503)
T ss_pred ceeEeccc-----------CceeEecC
Confidence 56676655 99999996
No 81
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=5.9e-25 Score=228.62 Aligned_cols=308 Identities=18% Similarity=0.242 Sum_probs=220.2
Q ss_pred ccCCCCCccccccccccccc-EEEEEee--ccEEEEeeCCCeEEeeecc----ccceeeEeecCCCceEEEEEEeeCCCE
Q 011970 71 THDPKGHCPFVLPFLMKRTK-VIEIVAA--RDIVFALAHSGVCAAFSRE----TNRRICFLNVSPDEVIRSLFYNKNNDS 143 (474)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~-V~~i~~s--~~~las~s~dgtiklW~~~----tg~~l~~l~g~~~~~i~sv~fspdg~~ 143 (474)
.|..|..+-+. |.|-++ |.++++- |-.+++||.|-+|++||.+ +.+-.+.|+......|+|+.|||.|++
T Consensus 152 ~~~IP~shEi~---l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~ 228 (641)
T KOG0772|consen 152 IKLIPGSHEIQ---LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQ 228 (641)
T ss_pred hhcCCccceEe---ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCe
Confidence 34456655333 344554 5555555 9999999999999999977 234566788777789999999999999
Q ss_pred EEEEEeecCCCccceeeeEEEEeEeccCCC-------CCccc-eee-eccccCceEEEEeCCCCeEEEEecCCCcEEEee
Q 011970 144 LITVSVYASDNFSSLKCRSTKIEYIRRGKP-------DSGFA-LFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFD 214 (474)
Q Consensus 144 Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~-------~~~~~-lf~-~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWd 214 (474)
|..+| |+ -+++|.| +.|.. ++.+. +.. .+|+.-+.+.+|.|.+-+.+.++|.|+|+|+||
T Consensus 229 iLvvs--g~--------aqakl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWd 297 (641)
T KOG0772|consen 229 ILVVS--GS--------AQAKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWD 297 (641)
T ss_pred EEEEe--cC--------cceeEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEe
Confidence 98766 32 3677777 66654 11111 111 133333445688866666778888888888888
Q ss_pred cCCCe-EEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCC
Q 011970 215 LKNYT-MLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE 293 (474)
Q Consensus 215 l~tg~-~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~ 293 (474)
+.+-+ .+..+... | +. +.--.+.+.+|+ +++..++++..||
T Consensus 298 v~~~k~q~qVik~k--------~---------------------~~--------g~Rv~~tsC~~n-rdg~~iAagc~DG 339 (641)
T KOG0772|consen 298 VNNTKSQLQVIKTK--------P---------------------AG--------GKRVPVTSCAWN-RDGKLIAAGCLDG 339 (641)
T ss_pred cCCchhheeEEeec--------c---------------------CC--------CcccCceeeecC-CCcchhhhcccCC
Confidence 86533 11111100 0 00 001134566776 5666677778999
Q ss_pred cEEEEECCCCc---eEEeccccCC--ceEEEEEcCCCcEEEEEc-CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEE
Q 011970 294 NLQILDVRNAE---LMEVSRTEFM--TPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIY 365 (474)
Q Consensus 294 tIkIWDv~tg~---~~~~l~~h~~--~v~sv~Fspdg~llaS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~sva 365 (474)
.||+||..+.- -+.+-..|.. .+++|+|||||++|+|=+ |+++||||++ .++|.+++|-....+ -.+++
T Consensus 340 SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~---~tdc~ 416 (641)
T KOG0772|consen 340 SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP---GTDCC 416 (641)
T ss_pred ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCC---CCccc
Confidence 99999975422 2334456877 999999999999999988 9999999994 889999988776554 35689
Q ss_pred ECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccc
Q 011970 366 ITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEAL 445 (474)
Q Consensus 366 fSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 445 (474)
||||.++|++|..+ +++. ..|++-++|-.|=+.+++|.-.+.
T Consensus 417 FSPd~kli~TGtS~-~~~~----~~g~L~f~d~~t~d~v~ki~i~~a--------------------------------- 458 (641)
T KOG0772|consen 417 FSPDDKLILTGTSA-PNGM----TAGTLFFFDRMTLDTVYKIDISTA--------------------------------- 458 (641)
T ss_pred cCCCceEEEecccc-cCCC----CCceEEEEeccceeeEEEecCCCc---------------------------------
Confidence 99999999998753 3332 257899999998888988855443
Q ss_pred cCEEEEEEcCCCCEEEEEcCCCcEEEc
Q 011970 446 EDITSLFYDEERNEIYTGNRHGLVHVW 472 (474)
Q Consensus 446 ~~V~slafSpDg~~LaSgs~DgtVklW 472 (474)
.|..+.|+|-=+.|.-|+.||++||+
T Consensus 459 -Svv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 459 -SVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred -eEEEEeecchhhheeeecCCCceEEE
Confidence 68889999999999999999999986
No 82
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=7.4e-25 Score=212.57 Aligned_cols=282 Identities=15% Similarity=0.180 Sum_probs=211.5
Q ss_pred CcccccccccccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecC-CCceEEEEEEeeCCC-EEEEEEeecCCC
Q 011970 77 HCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVS-PDEVIRSLFYNKNND-SLITVSVYASDN 154 (474)
Q Consensus 77 ~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~-~~~~i~sv~fspdg~-~Lis~S~~~s~d 154 (474)
++.-|+||+-.|-.|- .++. +-..-.|++-|-++..++.|..++-+ .++.+..|++|++.+ .+|+++ .|
T Consensus 12 ysvqfSPf~~nrLavA---t~q~--yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~----GD 82 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVA---TAQH--YGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAAS----GD 82 (311)
T ss_pred ceeEecccccchhhee---ehhh--cccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEe----cC
Confidence 4455677744443222 2211 12334678888887556666655543 346799999999865 566666 33
Q ss_pred ccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEE
Q 011970 155 FSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEI 232 (474)
Q Consensus 155 ~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~v 232 (474)
.+++|||. +..-.-+..|+ ||-.-|.+|.+.+.+++.++++|.|+||||||..-++-+.|+.+ .-|...
T Consensus 83 ------GSLrl~d~--~~~s~Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a 153 (311)
T KOG0277|consen 83 ------GSLRLFDL--TMPSKPIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQA 153 (311)
T ss_pred ------ceEEEecc--CCCCcchhHHH-hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEE
Confidence 48889994 33322122344 35566778999988999999999999999999988888888875 459999
Q ss_pred EEcC--CceEEEEecCCCCccEEEEecCC-CeEEEEEeecCcceeEEEEEecCCCeEEE-EeCCCcEEEEECCCCc-eEE
Q 011970 233 KISP--GIMLLIFNRSSSHVPLKILSIED-GTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAE-LME 307 (474)
Q Consensus 233 afSp--g~~la~~s~~s~D~tIkLWdi~t-G~~L~tl~~h~~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv~tg~-~~~ 307 (474)
+||| .+.+|+. |+|++++|||++. |+.+. ++-|...+.+.+|+-. +..+++ ++.|+.||+||+++-+ .+-
T Consensus 154 ~~sp~~~nlfas~---Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~ 228 (311)
T KOG0277|consen 154 AFSPHIPNLFASA---SGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLF 228 (311)
T ss_pred ecCCCCCCeEEEc---cCCceEEEEEecCCCceeE-EEeccceeEeeccccc-CCcEEEecCCCceEEEEehhhccccce
Confidence 9998 6776664 6799999999974 66655 8888889999999854 555555 6899999999999844 567
Q ss_pred eccccCCceEEEEEcCC-CcEEEEEc-CCcEEEEeCC-C-cEEEEeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCc
Q 011970 308 VSRTEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNFR-G-ELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPE 382 (474)
Q Consensus 308 ~l~~h~~~v~sv~Fspd-g~llaS~s-D~tIklWd~~-G-~ll~tl~gH~~~~~~~~v~svafSp-Dg~~LaS~s~~~~~ 382 (474)
.+.+|.-.|+.|.|||- -.+|||+| |=|++|||.. + .++.+.+-|+.. |..+.||+ ++.++||.+.
T Consensus 229 eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEF-----v~g~Dws~~~~~~vAs~gW---- 299 (311)
T KOG0277|consen 229 ELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEF-----VCGLDWSLFDPGQVASTGW---- 299 (311)
T ss_pred eecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceE-----EeccccccccCceeeeccc----
Confidence 78999999999999985 56788889 9999999995 4 478888888887 56677777 6788998766
Q ss_pred cccccCCCCeEEEEe
Q 011970 383 DQWMEGSAGSINVSS 397 (474)
Q Consensus 383 ~~~~~s~DgtIklWd 397 (474)
|++++|||
T Consensus 300 -------De~l~Vw~ 307 (311)
T KOG0277|consen 300 -------DELLYVWN 307 (311)
T ss_pred -------ccceeeec
Confidence 99999998
No 83
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=2.9e-24 Score=209.57 Aligned_cols=274 Identities=15% Similarity=0.182 Sum_probs=218.5
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
|.-++.+|-+. ||+|++.+.|.+..+|=-..|++|-+..| |.+.||++..+.+.+.|+|+| .| .+++
T Consensus 9 HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~G-HtGavW~~Did~~s~~liTGS----AD------~t~k 77 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDG-HTGAVWCCDIDWDSKHLITGS----AD------QTAK 77 (327)
T ss_pred CccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecC-CCceEEEEEecCCcceeeecc----cc------ceeE
Confidence 45556666666 99999999999999998888999999998 889999999999999999966 45 7999
Q ss_pred EeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecC-----CCcEEEeecC-------CCeEEEEEc--CCcEE
Q 011970 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-----DSIYKVFDLK-------NYTMLYSIS--DKHVQ 230 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~-----D~tiKlWdl~-------tg~~l~tl~--~~~V~ 230 (474)
|||+++||..+ .|... ..+..|.|+ ++|.+++.+.. -+.|-++|+. .-++++.+. +..+.
T Consensus 78 LWDv~tGk~la---~~k~~--~~Vk~~~F~-~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 78 LWDVETGKQLA---TWKTN--SPVKRVDFS-FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred EEEcCCCcEEE---EeecC--CeeEEEeec-cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 99999999844 34432 345589998 78887776653 4589999987 344566665 46788
Q ss_pred EEEEcC-CceEEEEecCCCCccEEEEecCCCeEE-EEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe
Q 011970 231 EIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVL-KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV 308 (474)
Q Consensus 231 ~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L-~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~ 308 (474)
..-++| +..|+++ .+|+.|.+||+++|+.+ .+-+.|.+.+..+.|+ ++...+++++.|.|-||||+.+-+++++
T Consensus 152 ~a~Wg~l~~~ii~G---he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s-~d~T~FiT~s~Dttakl~D~~tl~v~Kt 227 (327)
T KOG0643|consen 152 SALWGPLGETIIAG---HEDGSISIYDARTGKELVDSDEEHSSKINDLQFS-RDRTYFITGSKDTTAKLVDVRTLEVLKT 227 (327)
T ss_pred eeeecccCCEEEEe---cCCCcEEEEEcccCceeeechhhhcccccccccc-CCcceEEecccCccceeeeccceeeEEE
Confidence 888998 7777665 66899999999999654 5557888999999998 6788999999999999999999999999
Q ss_pred ccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC--C-C------------cEEEEeccCCCCcCCCCeeEEEECCCCCE
Q 011970 309 SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF--R-G------------ELVTSFEDHLLWHPDCNTNNIYITSDQDL 372 (474)
Q Consensus 309 l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~--~-G------------~ll~tl~gH~~~~~~~~v~svafSpDg~~ 372 (474)
..... +|.+.+++|-...++-++ ..---|=.. + | |.+...+||=++ +|+|||+|||+.
T Consensus 228 y~te~-PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGP-----INsvAfhPdGks 301 (327)
T KOG0643|consen 228 YTTER-PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGP-----INSVAFHPDGKS 301 (327)
T ss_pred eeecc-cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccC-----cceeEECCCCcc
Confidence 88765 889999999777777665 211111111 1 4 345677899987 799999999998
Q ss_pred EEEEecCCCccccccCCCCeEEEEeC
Q 011970 373 IISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 373 LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
-+||+. ||.|||--.
T Consensus 302 YsSGGE-----------DG~VR~h~F 316 (327)
T KOG0643|consen 302 YSSGGE-----------DGYVRLHHF 316 (327)
T ss_pred cccCCC-----------CceEEEEEe
Confidence 888754 999999754
No 84
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.5e-24 Score=228.00 Aligned_cols=264 Identities=14% Similarity=0.168 Sum_probs=215.2
Q ss_pred EEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcccee
Q 011970 101 VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF 180 (474)
Q Consensus 101 las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf 180 (474)
+++.+....+-||+-.+|+...-...+ .+.|.||.|+++|+.||. |..+ .++.|||+.+.+.... +.
T Consensus 190 ~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~Lav----G~~~------g~v~iwD~~~~k~~~~--~~ 256 (484)
T KOG0305|consen 190 VLAVALGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAV----GTSD------GTVQIWDVKEQKKTRT--LR 256 (484)
T ss_pred eEEEEecceEEEEecCCCceEEeEecC-CCceEEEEECCCCCEEEE----eecC------CeEEEEehhhcccccc--cc
Confidence 455556778999999999843333332 688999999999999998 4456 7999999977775442 22
Q ss_pred eeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEE-E--cCCcEEEEEEcC-CceEEEEecCCCCccEEEEe
Q 011970 181 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-I--SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILS 256 (474)
Q Consensus 181 ~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~t-l--~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWd 256 (474)
. .|...++.+++. +.+|.+|+.|+.|..+|+...+.+.. + |...|-.+++++ +.+||++ +.|..+.|||
T Consensus 257 ~-~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASG---gnDN~~~Iwd 329 (484)
T KOG0305|consen 257 G-SHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASG---GNDNVVFIWD 329 (484)
T ss_pred C-CcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccC---CCccceEecc
Confidence 2 145677899994 67999999999999999988774433 4 356899999997 5555543 7799999999
Q ss_pred cCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe--CCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEE-EEc-
Q 011970 257 IEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL-TFR- 332 (474)
Q Consensus 257 i~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~--~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~lla-S~s- 332 (474)
..+-+.+.++..|...|+.++|.|-..+.||+|+ .|++|++||+.+|+++...-.. ..|.+++|++..+=|+ +.+
T Consensus 330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg-sQVcsL~Wsk~~kEi~sthG~ 408 (484)
T KOG0305|consen 330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG-SQVCSLIWSKKYKELLSTHGY 408 (484)
T ss_pred CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC-CceeeEEEcCCCCEEEEecCC
Confidence 9888899999999999999999988788888863 8999999999999999875544 4799999998775444 444
Q ss_pred -CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 011970 333 -NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 401 (474)
Q Consensus 333 -D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG 401 (474)
++.|.||+. +=+.+..|.||... |..++.||||+.|++|+. |.|+|+|++-..
T Consensus 409 s~n~i~lw~~ps~~~~~~l~gH~~R-----Vl~la~SPdg~~i~t~a~-----------DETlrfw~~f~~ 463 (484)
T KOG0305|consen 409 SENQITLWKYPSMKLVAELLGHTSR-----VLYLALSPDGETIVTGAA-----------DETLRFWNLFDE 463 (484)
T ss_pred CCCcEEEEeccccceeeeecCCcce-----eEEEEECCCCCEEEEecc-----------cCcEEeccccCC
Confidence 889999999 58899999999987 789999999999999876 999999998763
No 85
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7e-25 Score=217.81 Aligned_cols=315 Identities=14% Similarity=0.196 Sum_probs=229.3
Q ss_pred CcccccccccccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCC
Q 011970 77 HCPFVLPFLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDN 154 (474)
Q Consensus 77 ~~~~~~~~~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d 154 (474)
.+.+.-.+.-|+..|+.|++. +.++.++|-|.|.+||.+++|+||.+..| |.+.|+||.|+|.|+.++++| .|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G-H~GSVNsikfh~s~~L~lTaS----GD 211 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG-HTGSVNSIKFHNSGLLLLTAS----GD 211 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecc-cccceeeEEeccccceEEEcc----CC
Confidence 344445566788899999988 78999999999999999999999999998 889999999999999999977 34
Q ss_pred ccceeeeEEEEeE------eccCCCCCccceeeeccccCc-eEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--
Q 011970 155 FSSLKCRSTKIEY------IRRGKPDSGFALFESESLKWP-GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-- 225 (474)
Q Consensus 155 ~s~Lk~~~~~iw~------i~~G~~~~~~~lf~~~~~~~~-~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-- 225 (474)
.+..||. ++....+... -..+...+- ..+.|- ||.. .+...+||+ ++..|.
T Consensus 212 ------~taHIW~~av~~~vP~~~a~~~h--SsEeE~e~sDe~~~d~--d~~~---~sD~~tiRv-------Pl~~ltgH 271 (481)
T KOG0300|consen 212 ------ETAHIWKAAVNWEVPSNNAPSDH--SSEEEEEHSDEHNRDT--DSSE---KSDGHTIRV-------PLMRLTGH 271 (481)
T ss_pred ------cchHHHHHhhcCcCCCCCCCCCC--Cchhhhhccccccccc--cccc---ccCCceeee-------eeeeeecc
Confidence 4777886 2222211110 000111110 011121 1110 112234543 344443
Q ss_pred CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEE-EeCCCcEEEEECCCC
Q 011970 226 DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNA 303 (474)
Q Consensus 226 ~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv~tg 303 (474)
..-|-+..+-. |+.++++ +=|.|..|||+|+|++++.|.||.+...-+.-.| .++|++ ++.|-|.||||.+..
T Consensus 272 ~~vV~a~dWL~gg~Q~vTa---SWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp--tQrLVvTsSrDtTFRLWDFRea 346 (481)
T KOG0300|consen 272 RAVVSACDWLAGGQQMVTA---SWDRTANLWDVETGEVVNILTGHDSELTHCSTHP--TQRLVVTSSRDTTFRLWDFREA 346 (481)
T ss_pred ccceEehhhhcCcceeeee---eccccceeeeeccCceeccccCcchhccccccCC--cceEEEEeccCceeEeccchhh
Confidence 34566666654 5555555 4489999999999999999999987776666543 577777 579999999999843
Q ss_pred c-eEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecC
Q 011970 304 E-LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 379 (474)
Q Consensus 304 ~-~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~ 379 (474)
- -+.++.||++.|.++.|.-|.+ ++|+| |+|||+||++ ...+.|+.-... +|-|+++.-+.+||---.
T Consensus 347 I~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~------~NRvavs~g~~iIAiPhD- 418 (481)
T KOG0300|consen 347 IQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSP------ANRVAVSKGHPIIAIPHD- 418 (481)
T ss_pred cceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCc------cceeEeecCCceEEeccC-
Confidence 2 3568999999999999998776 56777 9999999994 667888875443 689999999999987433
Q ss_pred CCccccccCCCCeEEEEeCCCCeEEEEec-----CCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEc
Q 011970 380 EPEDQWMEGSAGSINVSSILTGKCLAKIN-----ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD 454 (474)
Q Consensus 380 ~~~~~~~~s~DgtIklWdi~tG~cl~tl~-----gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafS 454 (474)
...|||+|+ +|+-++.|. ||.. .|++++|.
T Consensus 419 ----------NRqvRlfDl-nG~RlaRlPrtsRqgHrR----------------------------------MV~c~AW~ 453 (481)
T KOG0300|consen 419 ----------NRQVRLFDL-NGNRLARLPRTSRQGHRR----------------------------------MVTCCAWL 453 (481)
T ss_pred ----------CceEEEEec-CCCccccCCcccccccce----------------------------------eeeeeecc
Confidence 678999996 798888775 4543 79999998
Q ss_pred CCCC--EEEEEcCCCcEEEccC
Q 011970 455 EERN--EIYTGNRHGLVHVWSN 474 (474)
Q Consensus 455 pDg~--~LaSgs~DgtVklWd~ 474 (474)
++-. -|.|++.|..|-=|++
T Consensus 454 eehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 454 EEHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred ccCcccccccccccceeeeeEe
Confidence 8764 4899999999998864
No 86
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=4.9e-24 Score=207.44 Aligned_cols=299 Identities=13% Similarity=0.108 Sum_probs=236.2
Q ss_pred chhhhhhcccccceeecccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeec-CCCceE
Q 011970 54 SNAQERFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNV-SPDEVI 132 (474)
Q Consensus 54 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g-~~~~~i 132 (474)
.+++++|+ .++++|..+.++..++-+ |-.||+||.|+++++|+++-++++..++. +|...|
T Consensus 6 ~~~~~l~~-----r~~~~~~~~v~Sv~wn~~-------------g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~sv 67 (313)
T KOG1407|consen 6 PKFKSLKR-----RELQGHVQKVHSVAWNCD-------------GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSV 67 (313)
T ss_pred cchhhhhh-----HHhhhhhhcceEEEEccc-------------CceeeecccCCceEEEEecchhhhhhhcccCCCcch
Confidence 34455555 456666666555444444 99999999999999999998877776654 355678
Q ss_pred EEEEEeeC-CCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEE
Q 011970 133 RSLFYNKN-NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYK 211 (474)
Q Consensus 133 ~sv~fspd-g~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiK 211 (474)
--+.+.|. .+.++++| .| ++|++||+++||+... .+..+--..+.++ |+|++++.+..|..|-
T Consensus 68 dql~w~~~~~d~~atas----~d------k~ir~wd~r~~k~~~~-----i~~~~eni~i~ws-p~g~~~~~~~kdD~it 131 (313)
T KOG1407|consen 68 DQLCWDPKHPDLFATAS----GD------KTIRIWDIRSGKCTAR-----IETKGENINITWS-PDGEYIAVGNKDDRIT 131 (313)
T ss_pred hhheeCCCCCcceEEec----CC------ceEEEEEeccCcEEEE-----eeccCcceEEEEc-CCCCEEEEecCcccEE
Confidence 88888654 56788876 33 6999999999998442 2112222358898 7899999999999999
Q ss_pred EeecCCCeEEEEEcC-CcEEEEEEc-CCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEE
Q 011970 212 VFDLKNYTMLYSISD-KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK 289 (474)
Q Consensus 212 lWdl~tg~~l~tl~~-~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~ 289 (474)
..|..+++.+.+.+. -.|.++.|+ ++.++... .+-++|.|..-..=+.+++++.|......|.|. |+|.++++|
T Consensus 132 ~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt---~GlG~v~ILsypsLkpv~si~AH~snCicI~f~-p~GryfA~G 207 (313)
T KOG1407|consen 132 FIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLT---NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFD-PDGRYFATG 207 (313)
T ss_pred EEEecccceeehhcccceeeeeeecCCCCEEEEe---cCCceEEEEeccccccccccccCCcceEEEEEC-CCCceEeec
Confidence 999999988877764 478999999 67766554 335799999988889999999998888999997 789999999
Q ss_pred eCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEEC
Q 011970 290 QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYIT 367 (474)
Q Consensus 290 ~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafS 367 (474)
+.|-.+-|||+..--|.+.+.-+.-+|+.+.||+||++|||+| |.-|-|=+++ |..+.... |.+. .++||++
T Consensus 208 sADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~-----t~tVAWH 281 (313)
T KOG1407|consen 208 SADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGP-----TFTVAWH 281 (313)
T ss_pred cccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCC-----ceeEEec
Confidence 9999999999999999999988999999999999999999999 9999999995 99887775 3333 6899999
Q ss_pred CCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 368 SDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 368 pDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
|..-+||=+|. |+++. ..-+.|++||+=+
T Consensus 282 Pk~~LLAyA~d-dk~~d-~~reag~vKiFG~ 310 (313)
T KOG1407|consen 282 PKRPLLAYACD-DKDGD-SNREAGTVKIFGL 310 (313)
T ss_pred CCCceeeEEec-CCCCc-cccccceeEEecC
Confidence 99999997764 55441 1113478888754
No 87
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=2.8e-24 Score=238.36 Aligned_cols=288 Identities=13% Similarity=0.084 Sum_probs=216.4
Q ss_pred eecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEecc----CCC-CC--ccceeee-ccccCceEEEEeC
Q 011970 124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR----GKP-DS--GFALFES-ESLKWPGFVEFDD 195 (474)
Q Consensus 124 l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~----G~~-~~--~~~lf~~-~~~~~~~~V~Fs~ 195 (474)
+-+|++..|.+|..+|||..+||++. ..| ..++||.... -+. +. -..|++. .|...+.+|.|+
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq--~~d------~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S- 78 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQ--VLD------GGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFS- 78 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCc--ccc------ccceeeccccccchhhhhhcccchhheeeccccCceeEEEEC-
Confidence 44567778999999999999998651 133 3555887521 000 11 0124444 367778889998
Q ss_pred CCCeEEEEecCCCcEEEeecCC-------C-----------eEEEEE--cCCcEEEEEEcCCceEEEEecCCCCccEEEE
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKN-------Y-----------TMLYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKIL 255 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~t-------g-----------~~l~tl--~~~~V~~vafSpg~~la~~s~~s~D~tIkLW 255 (474)
|||++||+||.|+.|.||+.+. | ++.+++ |+..|.+|++||++.++++ .+-|.+|-||
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS--~s~DnsViiw 156 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVS--VSLDNSVIIW 156 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEE--ecccceEEEE
Confidence 8999999999999999999872 1 134445 4568999999984444443 3679999999
Q ss_pred ecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCC------ceEEEEEcCCCcEEE
Q 011970 256 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFM------TPSAFIFLYENQLFL 329 (474)
Q Consensus 256 di~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~------~v~sv~Fspdg~lla 329 (474)
|..+.+++++|++|+..|+.|.|- |-|.++++-+.|++|++|+..+-.+-+...+++. ..+.+.|||||++|+
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~D-P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWD-PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred ccccceeeeeeecccccccceEEC-CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeec
Confidence 999999999999999999999996 5678888888999999999777656555544443 445678999999999
Q ss_pred EEc--CC---cEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCC-----CC------------EEEEEecCCCccccc
Q 011970 330 TFR--NR---TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD-----QD------------LIISYCKAEPEDQWM 386 (474)
Q Consensus 330 S~s--D~---tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD-----g~------------~LaS~s~~~~~~~~~ 386 (474)
+.. ++ +|+|-+-. .++-..|-||... +.-+.|+|- .+ .+|+||
T Consensus 236 s~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p-----~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS--------- 301 (942)
T KOG0973|consen 236 SPNAVNGGKSTIAIIERGTWKVDKDLVGHSAP-----VEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS--------- 301 (942)
T ss_pred chhhccCCcceeEEEecCCceeeeeeecCCCc-----eEEEEeChHHhccccccCCccCCCcceEEEEEec---------
Confidence 974 43 89998874 6677899999987 577999981 12 456655
Q ss_pred cCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCC
Q 011970 387 EGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 466 (474)
Q Consensus 387 ~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~D 466 (474)
.|++|-||+...-+.+.. .|+-+- ..|..+.|||||-.|.-+|.|
T Consensus 302 --qDrSlSVW~T~~~RPl~v--i~~lf~-------------------------------~SI~DmsWspdG~~LfacS~D 346 (942)
T KOG0973|consen 302 --QDRSLSVWNTALPRPLFV--IHNLFN-------------------------------KSIVDMSWSPDGFSLFACSLD 346 (942)
T ss_pred --CCccEEEEecCCCCchhh--hhhhhc-------------------------------CceeeeeEcCCCCeEEEEecC
Confidence 499999999655555443 344211 178999999999999999999
Q ss_pred CcEEEc
Q 011970 467 GLVHVW 472 (474)
Q Consensus 467 gtVklW 472 (474)
|+|.+-
T Consensus 347 GtV~~i 352 (942)
T KOG0973|consen 347 GTVALI 352 (942)
T ss_pred CeEEEE
Confidence 999864
No 88
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.93 E-value=1.4e-21 Score=187.95 Aligned_cols=322 Identities=18% Similarity=0.284 Sum_probs=241.9
Q ss_pred cccccccEEEEEee--ccEEEEeeCCCeEEeeeccccc-eeeEeecCCCceEEEEEE-eeCCCEEEEEEeecCCCcccee
Q 011970 84 FLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNR-RICFLNVSPDEVIRSLFY-NKNNDSLITVSVYASDNFSSLK 159 (474)
Q Consensus 84 ~~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~-~l~~l~g~~~~~i~sv~f-spdg~~Lis~S~~~s~d~s~Lk 159 (474)
...+...|..+.+. +..++.++.|+.+.+|+...+. .+..+.+.+...+..+.+ ++++..++... +..|
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d----- 133 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS--SSLD----- 133 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEecc--CCCC-----
Confidence 34577788888888 8889999999999999988777 788888744346788888 88888333322 2335
Q ss_pred eeEEEEeEecc-CCCCCccceeeeccccCceEEEEeCCCCeEEEEecC-CCcEEEeecCCCeEEEEEcC--CcEEEEEEc
Q 011970 160 CRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISD--KHVQEIKIS 235 (474)
Q Consensus 160 ~~~~~iw~i~~-G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~-D~tiKlWdl~tg~~l~tl~~--~~V~~vafS 235 (474)
..+.+|++.. +.... .+. .+...+..++|+ |+++.+++++. |+++++|++.++..+.++.. ..|..++|+
T Consensus 134 -~~~~~~~~~~~~~~~~---~~~-~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 207 (466)
T COG2319 134 -GTVKLWDLSTPGKLIR---TLE-GHSESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS 207 (466)
T ss_pred -ccEEEEEecCCCeEEE---EEe-cCcccEEEEEEC-CCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEc
Confidence 6889999776 33311 111 234455589998 79999999986 99999999999888888764 689999999
Q ss_pred CCce-EEEEecCCCCccEEEEecCCCeEEE-EEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCce-EEecccc
Q 011970 236 PGIM-LLIFNRSSSHVPLKILSIEDGTVLK-VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-MEVSRTE 312 (474)
Q Consensus 236 pg~~-la~~s~~s~D~tIkLWdi~tG~~L~-tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~-~~~l~~h 312 (474)
|.+. ++++ .+.|++|++||..+++++. .+.+|...+ -..|. +++..+++++.|+++++||+..... +..+.+|
T Consensus 208 ~~~~~~~~~--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 283 (466)
T COG2319 208 PDGGLLIAS--GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFS-PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH 283 (466)
T ss_pred CCcceEEEE--ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeEC-CCCCEEEEecCCCcEEEeeecCCCcEEEEEecC
Confidence 8553 3333 3668999999999999999 688876664 33565 5556777788999999999997765 5555778
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEec--cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccC
Q 011970 313 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~--gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s 388 (474)
...+..+.|+|++..+++++ |+++++||.. +....... .|... +..+.|+|++..++.+..
T Consensus 284 ~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---------- 348 (466)
T COG2319 284 SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP-----VSSLSFSPDGSLLVSGGS---------- 348 (466)
T ss_pred CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCc-----eEEEEECCCCCEEEEeec----------
Confidence 89999999999988888887 9899999985 66665555 77763 678888545356655522
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE-EcCCC
Q 011970 389 SAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT-GNRHG 467 (474)
Q Consensus 389 ~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaS-gs~Dg 467 (474)
.|+.+++|++.+.........+. .+..+.|++ ....++ ++.++
T Consensus 349 ~d~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~-~~~~~~~~~~~~ 392 (466)
T COG2319 349 DDGTIRLWDLRTGKPLKTLEGHS-----------------------------------NVLSVSFSP-DGRVVSSGSTDG 392 (466)
T ss_pred CCCcEEeeecCCCceeEEecCCc-----------------------------------eEEEEEECC-CCCEEEEecCCC
Confidence 38999999998877444433332 378899999 544555 79999
Q ss_pred cEEEcc
Q 011970 468 LVHVWS 473 (474)
Q Consensus 468 tVklWd 473 (474)
.+.+|+
T Consensus 393 ~~~~~~ 398 (466)
T COG2319 393 TVRLWD 398 (466)
T ss_pred ceEEEe
Confidence 999997
No 89
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=3.1e-23 Score=224.88 Aligned_cols=321 Identities=16% Similarity=0.163 Sum_probs=241.3
Q ss_pred cccEEEEEee---ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 88 RTKVIEIVAA---RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 88 ~~~V~~i~~s---~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
+.+|.++.|. .-++|++...|.+.+||++.-+++..+...|.+.|....|-|.-..|.|++. |+ +|+.+.
T Consensus 244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~---Dn--Slk~~v-- 316 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGA---DN--SLKVWV-- 316 (910)
T ss_pred ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccC---CC--ceeEEE--
Confidence 5899999999 5577777777999999999777777776678889999999998888888763 33 455444
Q ss_pred EeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCC------------------------------------
Q 011970 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS------------------------------------ 208 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~------------------------------------ 208 (474)
.|-..|-+ .+.-+..+|...|.++.|-..+|..+.|+++|+
T Consensus 317 -fD~~dg~p--R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~ 393 (910)
T KOG1539|consen 317 -FDSGDGVP--RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKL 393 (910)
T ss_pred -eeCCCCcc--hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhh
Confidence 34222221 101122233334444444434444444444444
Q ss_pred -----------------------------cEEEeecCCCeE-EEEEc-------CCcEEEEEEcC-CceEEEEecCCCCc
Q 011970 209 -----------------------------IYKVFDLKNYTM-LYSIS-------DKHVQEIKISP-GIMLLIFNRSSSHV 250 (474)
Q Consensus 209 -----------------------------tiKlWdl~tg~~-l~tl~-------~~~V~~vafSp-g~~la~~s~~s~D~ 250 (474)
..+.|+..+-+. .++|. +..+.+|+.|+ |..-.++.+ .+
T Consensus 394 k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S---~G 470 (910)
T KOG1539|consen 394 KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYS---KG 470 (910)
T ss_pred cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEecc---CC
Confidence 555555554333 34443 24688999998 776666543 47
Q ss_pred cEEEEecCCCeEEEEE---eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcE
Q 011970 251 PLKILSIEDGTVLKVF---YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL 327 (474)
Q Consensus 251 tIkLWdi~tG~~L~tl---~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~l 327 (474)
+|.++|++.|-..++| ..|...|..|+.- .-|..+++++.||-++.||...+.++..++-. ..+..+..+-...+
T Consensus 471 ~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D-~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-~~~~~iv~hr~s~l 548 (910)
T KOG1539|consen 471 TIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVD-GTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-SSITGIVYHRVSDL 548 (910)
T ss_pred eEEEEEcccCeeecccccCccccCceeEEEec-CCCceEEEccCcceEEEEecCCcceeeeeccC-CCcceeeeeehhhh
Confidence 9999999999999999 4688899888853 34567788899999999999999987765422 24566777888889
Q ss_pred EEEEc-CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 011970 328 FLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 405 (474)
Q Consensus 328 laS~s-D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~ 405 (474)
||.+. |-.|.+.|. +-+.++.|.||++. +++..|||||++|+|+|. |++||+||+.||+|+-
T Consensus 549 ~a~~~ddf~I~vvD~~t~kvvR~f~gh~nr-----itd~~FS~DgrWlisasm-----------D~tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 549 LAIALDDFSIRVVDVVTRKVVREFWGHGNR-----ITDMTFSPDGRWLISASM-----------DSTIRTWDLPTGTLID 612 (910)
T ss_pred hhhhcCceeEEEEEchhhhhhHHhhccccc-----eeeeEeCCCCcEEEEeec-----------CCcEEEEeccCcceee
Confidence 99988 889999999 48899999999997 799999999999999988 9999999999999998
Q ss_pred EecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCC-CcEEEccC
Q 011970 406 KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH-GLVHVWSN 474 (474)
Q Consensus 406 tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~D-gtVklWd~ 474 (474)
.|.-.. ..++|.|||+|..|||...| .-|.||.|
T Consensus 613 ~~~vd~-----------------------------------~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 613 GLLVDS-----------------------------------PCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred eEecCC-----------------------------------cceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 874332 78899999999999999999 56999976
No 90
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=7.9e-24 Score=217.97 Aligned_cols=269 Identities=16% Similarity=0.225 Sum_probs=210.5
Q ss_pred cCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC------------Cccceeee--ccccCceEE
Q 011970 126 VSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD------------SGFALFES--ESLKWPGFV 191 (474)
Q Consensus 126 g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~------------~~~~lf~~--~~~~~~~~V 191 (474)
+.|.-.|.+|+++||+..+.++|-++ ++-=|++.+|+-+ .+.++-.. .|.+.+..+
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g----------~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~ 208 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDG----------TILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTL 208 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCc----------ceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEE
Confidence 34778899999999999999987433 5556777777742 22222222 356777789
Q ss_pred EEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCeEEEEEe
Q 011970 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 192 ~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~ 267 (474)
+.| +||++||+|+.|.-|.|||..+.+.++++.+ +.|.+++|-. ..++. + +.|.+||+|+++.-..+.||-
T Consensus 209 avS-~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys-~---s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 209 AVS-SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYS-A---SADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred EEc-CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceee-e---ecCCceEEEehhHhHHHHHHh
Confidence 998 7999999999999999999999999988764 6899999994 44433 2 558999999999888889999
Q ss_pred ecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-Cc
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE 344 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ 344 (474)
||+..|..++... -++.++. +.|.|++||++ .-+-..++.+|...+-+++|-.+-. |+||| ||.|.||++- -+
T Consensus 284 GHqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 284 GHQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKKK 359 (479)
T ss_pred CCccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeecccC
Confidence 9999999999753 5788874 69999999999 4455556789999999999987664 67888 9999999984 55
Q ss_pred EEEEec-cCC-----------CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC----eEEEEec
Q 011970 345 LVTSFE-DHL-----------LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG----KCLAKIN 408 (474)
Q Consensus 345 ll~tl~-gH~-----------~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG----~cl~tl~ 408 (474)
.+.+.. .|. .| |+++|..|..+++||||. +|.||||-+.+| +.+..|.
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~W-----itsla~i~~sdL~asGS~-----------~G~vrLW~i~~g~r~i~~l~~ls 423 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFW-----ITSLAVIPGSDLLASGSW-----------SGCVRLWKIEDGLRAINLLYSLS 423 (479)
T ss_pred ceeEeeccccccCCccccccccc-----eeeeEecccCceEEecCC-----------CCceEEEEecCCccccceeeecc
Confidence 554333 222 26 689999999999999986 999999999888 2333332
Q ss_pred CCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEc
Q 011970 409 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 464 (474)
Q Consensus 409 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs 464 (474)
-- ..|++|+|+++|+.|+.|-
T Consensus 424 ~~-----------------------------------GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 424 LV-----------------------------------GFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cc-----------------------------------cEEEEEEEccCCCEEEEec
Confidence 11 1899999999999777663
No 91
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.5e-24 Score=224.37 Aligned_cols=232 Identities=16% Similarity=0.155 Sum_probs=191.4
Q ss_pred cCceEEEEeCCCCe-EEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeE
Q 011970 186 KWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 262 (474)
Q Consensus 186 ~~~~~V~Fs~~nGk-~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~ 262 (474)
..|.+++|||.+=- ..+++| -.+.|++..+-...+++. .+.|.++.|-.||.|++++ ...+-|||+|+.+...
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaG--D~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAG--DESGHVKVFDMKSRVI 102 (487)
T ss_pred CcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEcc--CCcCcEEEeccccHHH
Confidence 45668999952211 233333 468999988777777776 5789999999766666653 3457899999888778
Q ss_pred EEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCc-EEEEEc-CCcEEEEe
Q 011970 263 LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWN 340 (474)
Q Consensus 263 L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~-llaS~s-D~tIklWd 340 (474)
|.+|..|++++..+.|.++++..++++++|+.+|+||+.+..-...+.+|++.|++.+|+|... +++||+ ||+||+||
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~D 182 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWD 182 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEE
Confidence 9999999999999999988777777789999999999999997557899999999999998766 899999 99999999
Q ss_pred CC--CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC-eEEEEecCCCCCCCCc
Q 011970 341 FR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVD 417 (474)
Q Consensus 341 ~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gH~~~~~~~ 417 (474)
.+ ++.+.+|. |..+ |.+|.|-|.|.+|||++ -..||+||+.+| |.+..+..|..
T Consensus 183 tR~~~~~v~eln-hg~p-----Ve~vl~lpsgs~iasAg------------Gn~vkVWDl~~G~qll~~~~~H~K----- 239 (487)
T KOG0310|consen 183 TRSLTSRVVELN-HGCP-----VESVLALPSGSLIASAG------------GNSVKVWDLTTGGQLLTSMFNHNK----- 239 (487)
T ss_pred eccCCceeEEec-CCCc-----eeeEEEcCCCCEEEEcC------------CCeEEEEEecCCceehhhhhcccc-----
Confidence 95 67788885 6554 78999999999999986 478999999866 45555555874
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 418 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|++|.|..|++.|+|||-|+-||++|
T Consensus 240 -----------------------------tVTcL~l~s~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 240 -----------------------------TVTCLRLASDSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred -----------------------------eEEEEEeecCCceEeecccccceEEEE
Confidence 899999999999999999999999987
No 92
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=4.3e-25 Score=213.87 Aligned_cols=243 Identities=13% Similarity=0.157 Sum_probs=195.3
Q ss_pred eeecccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEE
Q 011970 67 EEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLIT 146 (474)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis 146 (474)
..|+.|-+.+-.+-++++ --.-|+++-|=|.|+||..||-.|.++. |...|++++|+.|.+.|.|
T Consensus 53 gtfeghkgavw~~~l~~n-------------a~~aasaaadftakvw~a~tgdelhsf~--hkhivk~~af~~ds~~llt 117 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKN-------------ATRAASAAADFTAKVWDAVTGDELHSFE--HKHIVKAVAFSQDSNYLLT 117 (334)
T ss_pred EeeeccCcceeeeecCch-------------hhhhhhhcccchhhhhhhhhhhhhhhhh--hhheeeeEEecccchhhhc
Confidence 445555555544444443 2345788899999999999999999986 7789999999999999999
Q ss_pred EEeecCCCccceeeeEEEEeEeccCCCCCccceeee-ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc
Q 011970 147 VSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 225 (474)
Q Consensus 147 ~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~ 225 (474)
++ .+ +-+||.++.+-+. +.-+- +|.+.|..|.|.. ..+.+.|++.|+|||+||..+|+..++|.
T Consensus 118 gg----~e------kllrvfdln~p~A----pp~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~ 182 (334)
T KOG0278|consen 118 GG----QE------KLLRVFDLNRPKA----PPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLE 182 (334)
T ss_pred cc----hH------HHhhhhhccCCCC----CchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEe
Confidence 54 56 6788888876664 22222 3556677889985 45566677999999999999999999998
Q ss_pred -CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc
Q 011970 226 -DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304 (474)
Q Consensus 226 -~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~ 304 (474)
...|.++-+|+++.+++.+-+ .+|+.||..+-.+|+.+.-. ..|.+.... |..+.+++|++|.-+.-+|..||+
T Consensus 183 ~~s~VtSlEvs~dG~ilTia~g---ssV~Fwdaksf~~lKs~k~P-~nV~SASL~-P~k~~fVaGged~~~~kfDy~Tge 257 (334)
T KOG0278|consen 183 FNSPVTSLEVSQDGRILTIAYG---SSVKFWDAKSFGLLKSYKMP-CNVESASLH-PKKEFFVAGGEDFKVYKFDYNTGE 257 (334)
T ss_pred cCCCCcceeeccCCCEEEEecC---ceeEEeccccccceeeccCc-ccccccccc-CCCceEEecCcceEEEEEeccCCc
Confidence 578999999987766666443 57999999998999888632 345555544 667899999999999999999999
Q ss_pred eEEec-cccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-Cc
Q 011970 305 LMEVS-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE 344 (474)
Q Consensus 305 ~~~~l-~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ 344 (474)
-+... .+|+.+|-+|.|+|||.+.|+|| ||||+||... |+
T Consensus 258 Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 258 EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred eeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 99884 89999999999999999999999 9999999985 65
No 93
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=9.1e-25 Score=219.87 Aligned_cols=279 Identities=13% Similarity=0.130 Sum_probs=221.5
Q ss_pred eeEeecCCCceEEEEEEeeCC-CEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCe
Q 011970 121 ICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK 199 (474)
Q Consensus 121 l~~l~g~~~~~i~sv~fspdg-~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk 199 (474)
++.|.| |.+.|.++|=+|+- .+++|+| .| ..++|||+.+.++..+ |.. |.+.|..+.++ + .
T Consensus 59 v~~L~g-HrdGV~~lakhp~~ls~~aSGs----~D------G~VkiWnlsqR~~~~~---f~A-H~G~V~Gi~v~--~-~ 120 (433)
T KOG0268|consen 59 VGSLDG-HRDGVSCLAKHPNKLSTVASGS----CD------GEVKIWNLSQRECIRT---FKA-HEGLVRGICVT--Q-T 120 (433)
T ss_pred hhhccc-cccccchhhcCcchhhhhhccc----cC------ceEEEEehhhhhhhhe---eec-ccCceeeEEec--c-c
Confidence 445665 77889999999987 5677755 55 6999999988888543 443 45666788886 3 4
Q ss_pred EEEEecCCCcEEEeecCCCeEEEEEcCC-cEEEEEEc-CCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEE
Q 011970 200 VLTYSAQDSIYKVFDLKNYTMLYSISDK-HVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 277 (474)
Q Consensus 200 ~LaS~s~D~tiKlWdl~tg~~l~tl~~~-~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~ 277 (474)
-..++++|+|||.|-+. |.+++++.++ .+..|.-+ -+..+|+. + ..|.|||.+--.++++|+--.+.+.+|.
T Consensus 121 ~~~tvgdDKtvK~wk~~-~~p~~tilg~s~~~gIdh~~~~~~FaTc---G--e~i~IWD~~R~~Pv~smswG~Dti~svk 194 (433)
T KOG0268|consen 121 SFFTVGDDKTVKQWKID-GPPLHTILGKSVYLGIDHHRKNSVFATC---G--EQIDIWDEQRDNPVSSMSWGADSISSVK 194 (433)
T ss_pred ceEEecCCcceeeeecc-CCcceeeecccccccccccccccccccc---C--ceeeecccccCCccceeecCCCceeEEe
Confidence 67788999999999874 4688888754 56777776 36666665 2 3599999988899999996678899999
Q ss_pred EEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC--CcEEEEeccCCC
Q 011970 278 FIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLL 354 (474)
Q Consensus 278 F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~--G~ll~tl~gH~~ 354 (474)
|+|-....|++++.|+.|-|+|++++..++... -.+....++|+|++-.|++++ |-.+-.+|++ -+.+....||..
T Consensus 195 fNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvs 273 (433)
T KOG0268|consen 195 FNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVS 273 (433)
T ss_pred cCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccce
Confidence 986544455556799999999999999876422 236677899999999999999 9999999995 778999999988
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccc
Q 011970 355 WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 434 (474)
Q Consensus 355 ~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 434 (474)
. |.+|.|||-|+-++|||. |.||||+.+..|..-.+. |+
T Consensus 274 A-----V~dVdfsptG~Efvsgsy-----------DksIRIf~~~~~~SRdiY--ht----------------------- 312 (433)
T KOG0268|consen 274 A-----VMDVDFSPTGQEFVSGSY-----------DKSIRIFPVNHGHSRDIY--HT----------------------- 312 (433)
T ss_pred e-----EEEeccCCCcchhccccc-----------cceEEEeecCCCcchhhh--hH-----------------------
Confidence 7 799999999999999988 999999998654332221 22
Q ss_pred ccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 435 SYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 435 ~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
+-.+.|.+|.||.|.++|+|||.|+.||||.
T Consensus 313 --------kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 313 --------KRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred --------hhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 1123799999999999999999999999995
No 94
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.4e-24 Score=228.80 Aligned_cols=239 Identities=14% Similarity=0.154 Sum_probs=190.9
Q ss_pred eCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC--C-ccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeec
Q 011970 139 KNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD--S-GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL 215 (474)
Q Consensus 139 pdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~--~-~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl 215 (474)
|+|++|.|++ -| .++++|++..-.-- . ...-+++ |..|+..++.. -+|+.|.|+|.|-|||||+.
T Consensus 35 ~~~ryLfTgG----RD------g~i~~W~~~~d~~~~s~~~~asme~-HsDWVNDiiL~-~~~~tlIS~SsDtTVK~W~~ 102 (735)
T KOG0308|consen 35 PNGRYLFTGG----RD------GIIRLWSVTQDSNEPSTPYIASMEH-HSDWVNDIILC-GNGKTLISASSDTTVKVWNA 102 (735)
T ss_pred CCCceEEecC----CC------ceEEEeccccccCCcccchhhhhhh-hHhHHhhHHhh-cCCCceEEecCCceEEEeec
Confidence 5677799965 44 59999998433221 1 1122333 67898888886 69999999999999999998
Q ss_pred CCC--eEEEEEc--CCcEEEEEE-cCCceEEEEecCCCCccEEEEecCCC--eEEEEEe---------ecCcceeEEEEE
Q 011970 216 KNY--TMLYSIS--DKHVQEIKI-SPGIMLLIFNRSSSHVPLKILSIEDG--TVLKVFY---------HLLHRNKKVDFI 279 (474)
Q Consensus 216 ~tg--~~l~tl~--~~~V~~vaf-Spg~~la~~s~~s~D~tIkLWdi~tG--~~L~tl~---------~h~~~v~~V~F~ 279 (474)
..+ -|+.+|. .+.|.++|+ -++.-++++ ++-|+.|.|||+.+| +++.+|+ |+-..+.+++-.
T Consensus 103 ~~~~~~c~stir~H~DYVkcla~~ak~~~lvaS--gGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N 180 (735)
T KOG0308|consen 103 HKDNTFCMSTIRTHKDYVKCLAYIAKNNELVAS--GGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMN 180 (735)
T ss_pred ccCcchhHhhhhcccchheeeeecccCceeEEe--cCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecC
Confidence 766 4888885 468999999 465555554 477999999999999 5566554 455677888865
Q ss_pred ecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcC
Q 011970 280 EQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHP 357 (474)
Q Consensus 280 ~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~ 357 (474)
|.+..+++|+-.+-||+||.++++.+..++||+.-|..+..++||+.++|+| |+||||||+. -.|++|+.-|...
T Consensus 181 -~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~-- 257 (735)
T KOG0308|consen 181 -QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG-- 257 (735)
T ss_pred -CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc--
Confidence 4344555578999999999999999988999999999999999999999998 9999999995 8899999999986
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEec
Q 011970 358 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKIN 408 (474)
Q Consensus 358 ~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~ 408 (474)
||+++-+|+=+.+.||+. ||.|..=|+.+ .+|....+
T Consensus 258 ---VWaL~~~~sf~~vYsG~r-----------d~~i~~Tdl~n~~~~tlick 295 (735)
T KOG0308|consen 258 ---VWALQSSPSFTHVYSGGR-----------DGNIYRTDLRNPAKSTLICK 295 (735)
T ss_pred ---eEEEeeCCCcceEEecCC-----------CCcEEecccCCchhheEeec
Confidence 899999999999999865 99999989877 45555443
No 95
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.92 E-value=5.1e-21 Score=183.98 Aligned_cols=300 Identities=16% Similarity=0.277 Sum_probs=224.3
Q ss_pred EEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCC-CCCcccee
Q 011970 102 FALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK-PDSGFALF 180 (474)
Q Consensus 102 as~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~-~~~~~~lf 180 (474)
.....+..+..+...+ ..+. .|...|.++.|++.+..++.++ .+ ..+.+|+...+. ... .+
T Consensus 43 ~~~~~~~~~~~~~~~~----~~~~-~~~~~i~~~~~~~~~~~~~~~~----~d------~~~~~~~~~~~~~~~~---~~ 104 (466)
T COG2319 43 LALLSDSLVSLPDLSS----LLLR-GHEDSITSIAFSPDGELLLSGS----SD------GTIKLWDLDNGEKLIK---SL 104 (466)
T ss_pred Eeecccccccccccch----heee-eccceEEEEEECCCCcEEEEec----CC------CcEEEEEcCCCceeEE---EE
Confidence 3344444444444332 2334 3778899999999999888755 44 688899987775 211 12
Q ss_pred eeccccCceEEEE-eCCCCe-EEEEecC-CCcEEEeecCC-CeEEEEEc--CCcEEEEEEcCCc-eEEEEecCCCCccEE
Q 011970 181 ESESLKWPGFVEF-DDVNGK-VLTYSAQ-DSIYKVFDLKN-YTMLYSIS--DKHVQEIKISPGI-MLLIFNRSSSHVPLK 253 (474)
Q Consensus 181 ~~~~~~~~~~V~F-s~~nGk-~LaS~s~-D~tiKlWdl~t-g~~l~tl~--~~~V~~vafSpg~-~la~~s~~s~D~tIk 253 (474)
...+...+..+.+ + +++. +++..+. |+++++||+.+ +.....+. ...|..++|+|++ .+++.+ ..|+.++
T Consensus 105 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~ 181 (466)
T COG2319 105 EGLHDSSVSKLALSS-PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGS--SLDGTIK 181 (466)
T ss_pred eccCCCceeeEEEEC-CCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecC--CCCCceE
Confidence 2111112334444 5 6777 6666555 99999999987 66665554 5689999999866 444431 1489999
Q ss_pred EEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEE-eccccCCceEEEEEcCCCcEEEEE
Q 011970 254 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLTF 331 (474)
Q Consensus 254 LWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~-~l~~h~~~v~sv~Fspdg~llaS~ 331 (474)
+|++.++..+.++.+|...+..++|+ |++..++++ +.|++|++||..+++++. .+.+|...+ --.|+|++.+++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 259 (466)
T COG2319 182 LWDLRTGKPLSTLAGHTDPVSSLAFS-PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASG 259 (466)
T ss_pred EEEcCCCceEEeeccCCCceEEEEEc-CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEe
Confidence 99999999999999999999999998 666645555 899999999999999998 688898775 33899999888888
Q ss_pred c-CCcEEEEeCC-Cc-EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEec
Q 011970 332 R-NRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 408 (474)
Q Consensus 332 s-D~tIklWd~~-G~-ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 408 (474)
+ |+++++||.. .. ++..+.+|..+ |..+.|.|++..+++++. |+++++||+.++.......
T Consensus 260 ~~d~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~-----------d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 260 SSDGTIRLWDLRSSSSLLRTLSGHSSS-----VLSVAFSPDGKLLASGSS-----------DGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred cCCCcEEEeeecCCCcEEEEEecCCcc-----EEEEEECCCCCEEEEeeC-----------CCcEEEEEcCCCceEEEee
Confidence 8 9999999995 33 36666788665 789999999999999665 7889999999998887776
Q ss_pred --CCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEE-cCCCcEEEccC
Q 011970 409 --ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG-NRHGLVHVWSN 474 (474)
Q Consensus 409 --gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSg-s~DgtVklWd~ 474 (474)
+|.. .|..+.|+|++..++.+ ..|+.+++|+.
T Consensus 324 ~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 324 LKGHEG----------------------------------PVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred ecccCC----------------------------------ceEEEEECCCCCEEEEeecCCCcEEeeec
Confidence 7763 58889995454566666 78899999863
No 96
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=4e-23 Score=212.79 Aligned_cols=267 Identities=13% Similarity=0.147 Sum_probs=213.2
Q ss_pred ccccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeE-eec----------------CCCceEEEEEEeeCCCEEE
Q 011970 85 LMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICF-LNV----------------SPDEVIRSLFYNKNNDSLI 145 (474)
Q Consensus 85 ~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~-l~g----------------~~~~~i~sv~fspdg~~Li 145 (474)
-.|+-+|.+++++ ..+++++|.||+|.-|++.||+-+.. +.- .|...|-+++.||||++||
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla 218 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA 218 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence 3477777777777 67999999999999999999995521 111 3566799999999999999
Q ss_pred EEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc
Q 011970 146 TVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 225 (474)
Q Consensus 146 s~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~ 225 (474)
|+ ..| +.+.||+..+++..+. |. +|.+.|.+++|= ..-..|-|+|.|++||+|+++.-..+.|+.
T Consensus 219 tg----g~d------~~v~Iw~~~t~ehv~~---~~-ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 219 TG----GRD------RHVQIWDCDTLEHVKV---FK-GHRGAVSSLAFR-KGTSELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred ec----CCC------ceEEEecCcccchhhc---cc-ccccceeeeeee-cCccceeeeecCCceEEEehhHhHHHHHHh
Confidence 94 466 7889999999997553 44 366777789996 344568899999999999998766666665
Q ss_pred --CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCC
Q 011970 226 --DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNA 303 (474)
Q Consensus 226 --~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg 303 (474)
+..|.+|....-.+.++. ++.|.|++||+|.. +....|.+|...+.+|+|+. .+.+++|+.||+|-||++...
T Consensus 284 GHqd~v~~IdaL~reR~vtV--GgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In--~~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRERCVTV--GGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN--DEHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred CCccceeeechhcccceEEe--ccccceeEEEeccc-cceeeeeCCCCCeeeEEEec--ccceeeccCCceEEEeeeccc
Confidence 457988888876677776 35799999999965 55667889988999999984 688999999999999999998
Q ss_pred ceEEec-cc-----------cCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-C----cEEEEeccCCCCcCCCCeeEEE
Q 011970 304 ELMEVS-RT-----------EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G----ELVTSFEDHLLWHPDCNTNNIY 365 (474)
Q Consensus 304 ~~~~~l-~~-----------h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G----~ll~tl~gH~~~~~~~~v~sva 365 (474)
+.+-+. .. +..|+++++-.|...++|||| ||.||||-+. | +++..+. -.++ ||+++
T Consensus 359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~Gf-----VNsl~ 432 (479)
T KOG0299|consen 359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGF-----VNSLA 432 (479)
T ss_pred CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccE-----EEEEE
Confidence 876432 11 223999999999999999999 9999999995 6 4566555 2334 79999
Q ss_pred ECCCCCEEEEEe
Q 011970 366 ITSDQDLIISYC 377 (474)
Q Consensus 366 fSpDg~~LaS~s 377 (474)
|+++|+.|+.|.
T Consensus 433 f~~sgk~ivagi 444 (479)
T KOG0299|consen 433 FSNSGKRIVAGI 444 (479)
T ss_pred EccCCCEEEEec
Confidence 999999777765
No 97
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=5.7e-24 Score=221.31 Aligned_cols=230 Identities=17% Similarity=0.218 Sum_probs=175.0
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe--E--EEEEc---CCcEEEEEEcC-CceEEEEecCCCCccEEEEe
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--M--LYSIS---DKHVQEIKISP-GIMLLIFNRSSSHVPLKILS 256 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~--~--l~tl~---~~~V~~vafSp-g~~la~~s~~s~D~tIkLWd 256 (474)
.+-|-+++|+ |+|-.++|||-|.+||+||++.-. + .+.|. .+.|.+++||| |.+|++.+ +...+||.|
T Consensus 167 tk~Vsal~~D-p~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs---g~aqakl~D 242 (641)
T KOG0772|consen 167 TKIVSALAVD-PSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS---GSAQAKLLD 242 (641)
T ss_pred ceEEEEeeec-CCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe---cCcceeEEc
Confidence 4556689997 799999999999999999987433 1 12232 47899999997 66666653 245799999
Q ss_pred cCCCeEEEEE-------------eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc-eEEec-----cccCCceE
Q 011970 257 IEDGTVLKVF-------------YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVS-----RTEFMTPS 317 (474)
Q Consensus 257 i~tG~~L~tl-------------~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~-~~~~l-----~~h~~~v~ 317 (474)
++|..+..| +||...+.+..|.|..-+.+|+++.|+|+||||+.+-+ .++++ .+--..|.
T Consensus 243 -RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t 321 (641)
T KOG0772|consen 243 -RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT 321 (641)
T ss_pred -cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCce
Confidence 477665544 36888889999997666889999999999999998754 33433 23345788
Q ss_pred EEEEcCCCcEEEEEc-CCcEEEEeCCCcEE----EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe
Q 011970 318 AFIFLYENQLFLTFR-NRTVAVWNFRGELV----TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 392 (474)
Q Consensus 318 sv~Fspdg~llaS~s-D~tIklWd~~G~ll----~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dgt 392 (474)
+++|+|||+++|++. ||.|++|+..+..+ ..=..|... ..+.+|.||+||++|+|-+. |++
T Consensus 322 sC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g---~~Itsi~FS~dg~~LlSRg~-----------D~t 387 (641)
T KOG0772|consen 322 SCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG---QDITSISFSYDGNYLLSRGF-----------DDT 387 (641)
T ss_pred eeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC---CceeEEEeccccchhhhccC-----------CCc
Confidence 999999999999999 99999999743222 223467653 23789999999999999765 999
Q ss_pred EEEEeCCC-CeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcC
Q 011970 393 INVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 465 (474)
Q Consensus 393 IklWdi~t-G~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~ 465 (474)
+||||+.+ .+||.+..|--. +. .-+.+.||||-+.|++|..
T Consensus 388 LKvWDLrq~kkpL~~~tgL~t-~~-------------------------------~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 388 LKVWDLRQFKKPLNVRTGLPT-PF-------------------------------PGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred eeeeeccccccchhhhcCCCc-cC-------------------------------CCCccccCCCceEEEeccc
Confidence 99999965 567777665442 00 3466899999999999963
No 98
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=4.7e-25 Score=236.16 Aligned_cols=219 Identities=13% Similarity=0.223 Sum_probs=191.0
Q ss_pred CCCeEEEEecCCCcEEEeecCCCeEEEE--EcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcce
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYS--ISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN 273 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~tg~~l~t--l~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v 273 (474)
..++.++.|+.|..+-||.+..-.++.+ .|...|.+|.|++...|+.++ +.+++||+||++.++.+++|.||...+
T Consensus 38 ~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaag--sasgtiK~wDleeAk~vrtLtgh~~~~ 115 (825)
T KOG0267|consen 38 KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAG--SASGTIKVWDLEEAKIVRTLTGHLLNI 115 (825)
T ss_pred ccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhccc--ccCCceeeeehhhhhhhhhhhccccCc
Confidence 4578999999999999998866555554 456789999999755555553 457999999999999999999999999
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEecc
Q 011970 274 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED 351 (474)
Q Consensus 274 ~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~g 351 (474)
.+|+|+ |.+++.+.++-|..++|||.+-.-|..+..+|...|..+.|+|||++++++. |.+|||||.. |+++.+|++
T Consensus 116 ~sv~f~-P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~ 194 (825)
T KOG0267|consen 116 TSVDFH-PYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS 194 (825)
T ss_pred ceeeec-cceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc
Confidence 999998 6799998889999999999998889999999999999999999999999999 8999999995 999999999
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccc
Q 011970 352 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL 431 (474)
Q Consensus 352 H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~ 431 (474)
|... +.++-|.|..-++++||. |+||++||++|-+.+-..++-..
T Consensus 195 ~e~~-----v~sle~hp~e~Lla~Gs~-----------d~tv~f~dletfe~I~s~~~~~~------------------- 239 (825)
T KOG0267|consen 195 HEGK-----VQSLEFHPLEVLLAPGSS-----------DRTVRFWDLETFEVISSGKPETD------------------- 239 (825)
T ss_pred cccc-----ccccccCchhhhhccCCC-----------CceeeeeccceeEEeeccCCccC-------------------
Confidence 9976 688999999999999876 99999999987777665544432
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEEcCCC
Q 011970 432 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 467 (474)
Q Consensus 432 ~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dg 467 (474)
.|.+++|+|||..+++|-.+.
T Consensus 240 ---------------~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 240 ---------------GVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ---------------CceeeeecCCceeeecCchhh
Confidence 899999999999999997654
No 99
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.2e-23 Score=207.15 Aligned_cols=291 Identities=13% Similarity=0.105 Sum_probs=214.3
Q ss_pred EEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccce
Q 011970 100 IVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL 179 (474)
Q Consensus 100 ~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~l 179 (474)
.|++.-.++|++. +..+.+.| |.+.||-|+--.--..+.++| .| ++.+||.+.+|+|+..
T Consensus 126 rivssFk~~t~~~------~lvre~~G-HkDGiW~Vaa~~tqpi~gtAS----AD------hTA~iWs~Esg~CL~~--- 185 (481)
T KOG0300|consen 126 RIVSSFKDGTVKF------RLVRELEG-HKDGIWHVAADSTQPICGTAS----AD------HTARIWSLESGACLAT--- 185 (481)
T ss_pred hheeeecCCceeE------eehhhhcc-cccceeeehhhcCCcceeecc----cc------cceeEEeeccccceee---
Confidence 3555556666432 34455666 778899999876666777766 55 8999999999999542
Q ss_pred eeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecC----CCeEE--EEEcCCcEEEEEEcC-CceEEEEecCCCCccE
Q 011970 180 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK----NYTML--YSISDKHVQEIKISP-GIMLLIFNRSSSHVPL 252 (474)
Q Consensus 180 f~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~----tg~~l--~tl~~~~V~~vafSp-g~~la~~s~~s~D~tI 252 (474)
+ .+|.+.+.++.|+ +.|.+++++|.|+|-.||... ..+.. ...+.+ .++.-|+ ......++..++..+|
T Consensus 186 Y-~GH~GSVNsikfh-~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE--eE~e~sDe~~~d~d~~~~sD~~ti 261 (481)
T KOG0300|consen 186 Y-TGHTGSVNSIKFH-NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSE--EEEEHSDEHNRDTDSSEKSDGHTI 261 (481)
T ss_pred e-cccccceeeEEec-cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCch--hhhhcccccccccccccccCCcee
Confidence 2 2577888899998 789999999999999999732 11100 011100 0111121 1111111111222356
Q ss_pred EEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc
Q 011970 253 KILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 332 (474)
Q Consensus 253 kLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s 332 (474)
+ .+|..|.+|...|-..+|. ..+++++++++|.|..|||+++|+.++.|.||.....-+.-.|..+|++|+|
T Consensus 262 R-------vPl~~ltgH~~vV~a~dWL-~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsS 333 (481)
T KOG0300|consen 262 R-------VPLMRLTGHRAVVSACDWL-AGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSS 333 (481)
T ss_pred e-------eeeeeeeccccceEehhhh-cCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEec
Confidence 4 4788999999999998887 4577888899999999999999999999999999999998899999999999
Q ss_pred -CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC-eEEEEec
Q 011970 333 -NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKIN 408 (474)
Q Consensus 333 -D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~ 408 (474)
|-|.+||||+ =.-+..|.||++. |.++.|.-|- .++|||. |.|||+||+.+= ..|+||+
T Consensus 334 rDtTFRLWDFReaI~sV~VFQGHtdt-----VTS~vF~~dd-~vVSgSD-----------DrTvKvWdLrNMRsplATIR 396 (481)
T KOG0300|consen 334 RDTTFRLWDFREAIQSVAVFQGHTDT-----VTSVVFNTDD-RVVSGSD-----------DRTVKVWDLRNMRSPLATIR 396 (481)
T ss_pred cCceeEeccchhhcceeeeecccccc-----eeEEEEecCC-ceeecCC-----------CceEEEeeeccccCcceeee
Confidence 9999999996 3468899999987 6899998764 5788876 999999998663 4578886
Q ss_pred CCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 409 ATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 409 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
-.+ .+.-|+.+--+++||---.+..|||+|+
T Consensus 397 tdS-----------------------------------~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 397 TDS-----------------------------------PANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred cCC-----------------------------------ccceeEeecCCceEEeccCCceEEEEec
Confidence 654 5666777777777777777777888764
No 100
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=8.4e-23 Score=222.04 Aligned_cols=243 Identities=12% Similarity=0.112 Sum_probs=190.1
Q ss_pred eecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEecc-----------------------C---------
Q 011970 124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-----------------------G--------- 171 (474)
Q Consensus 124 l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~-----------------------G--------- 171 (474)
++..|++.||++-||+||++||||+ .| ..++||-|.. +
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaG----eD------~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~ 331 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAG----ED------GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEK 331 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecC----CC------ceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccc
Confidence 4546899999999999999999965 66 6889998765 0
Q ss_pred ---CC--------------CCccceeee-------ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-C
Q 011970 172 ---KP--------------DSGFALFES-------ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-D 226 (474)
Q Consensus 172 ---~~--------------~~~~~lf~~-------~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~ 226 (474)
+. ......|.. +|..-|..+++| .|+ +|.|+|.|+|||||++..-+||.++. .
T Consensus 332 ~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-Kn~-fLLSSSMDKTVRLWh~~~~~CL~~F~Hn 409 (712)
T KOG0283|consen 332 ISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS-KNN-FLLSSSMDKTVRLWHPGRKECLKVFSHN 409 (712)
T ss_pred ccccccccccccCCccccCCCccccccccchhhhhccchhheecccc-cCC-eeEeccccccEEeecCCCcceeeEEecC
Confidence 00 000011211 355556678998 454 89999999999999999999999996 5
Q ss_pred CcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc
Q 011970 227 KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE 304 (474)
Q Consensus 227 ~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~ 304 (474)
+.|.+|+|+| +..++++ +-|+.||||+|.+-++..-..-+ .-|.+|.|. |+|+..++|..+|.+++|+...-+
T Consensus 410 dfVTcVaFnPvDDryFiSG---SLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~-PdGk~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISG---SLDGKVRLWSISDKKVVDWNDLR-DLITAVCYS-PDGKGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred CeeEEEEecccCCCcEeec---ccccceEEeecCcCeeEeehhhh-hhheeEEec-cCCceEEEEEeccEEEEEEccCCe
Confidence 7899999998 6666654 67999999999987776544433 678999998 669999999999999999988777
Q ss_pred eEEec---------cccCCceEEEEEcCCC--cEEEEEcCCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCE
Q 011970 305 LMEVS---------RTEFMTPSAFIFLYEN--QLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL 372 (474)
Q Consensus 305 ~~~~l---------~~h~~~v~sv~Fspdg--~llaS~sD~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~ 372 (474)
+.... ..|. .|+.|-|.|.. ++|+|+.|..|||.|.+ -+++..|+|+..... =...+|++||++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~S---Q~~Asfs~Dgk~ 560 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSS---QISASFSSDGKH 560 (712)
T ss_pred EEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCc---ceeeeEccCCCE
Confidence 65321 1133 79999987644 48888889999999994 889999998876421 256899999999
Q ss_pred EEEEecCCCccccccCCCCeEEEEeC
Q 011970 373 IISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 373 LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
|+|+|. |.-|.||+.
T Consensus 561 IVs~se-----------Ds~VYiW~~ 575 (712)
T KOG0283|consen 561 IVSASE-----------DSWVYIWKN 575 (712)
T ss_pred EEEeec-----------CceEEEEeC
Confidence 999986 999999996
No 101
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=2.1e-22 Score=206.43 Aligned_cols=264 Identities=13% Similarity=0.144 Sum_probs=220.1
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~ 177 (474)
...+++|..|.++-++|.+++|.|.+|.| |.-.|.+|-|+|+.+.++++|+ | ..++||.+........
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~G-h~kki~~v~~~~~~~~v~~aSa----d------~~i~vws~~~~s~~~~- 298 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLKG-HTKKITSVKFHKDLDTVITASA----D------EIIRVWSVPLSSEPTS- 298 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhccC-cceEEEEEEeccchhheeecCC----c------ceEEeeccccccCccc-
Confidence 47899999999999999999999999998 7788999999999999999774 4 5899999866554221
Q ss_pred ceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC----CcEEEEEEcCCceEEEEecCCCCccEE
Q 011970 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKISPGIMLLIFNRSSSHVPLK 253 (474)
Q Consensus 178 ~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~----~~V~~vafSpg~~la~~s~~s~D~tIk 253 (474)
+-. |-..|.++.-. |+|.||.++|.|+++-+-|+.+|.++...++ -.+.+.+|+||+.|... +..|+.||
T Consensus 299 -~~~--h~~~V~~ls~h-~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgt--gt~d~~vk 372 (506)
T KOG0289|consen 299 -SRP--HEEPVTGLSLH-PTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGT--GTPDGVVK 372 (506)
T ss_pred -ccc--ccccceeeeec-cCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEec--cCCCceEE
Confidence 111 23345578886 8999999999999999999999998876664 25899999998866554 46689999
Q ss_pred EEecCCCeEEEEEeecCcceeEEEEEecCCCeEEE-EeCCCcEEEEECCCCceEEecc-ccCCceEEEEEcCCCcEEEEE
Q 011970 254 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTF 331 (474)
Q Consensus 254 LWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv~tg~~~~~l~-~h~~~v~sv~Fspdg~llaS~ 331 (474)
|||+..+..+..|.+|.+.|++|+|++ |++.++ +.+|+.|+|||++.-+..+++. ..+..+.++.|-+-|++|+.+
T Consensus 373 iwdlks~~~~a~Fpght~~vk~i~FsE--NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 373 IWDLKSQTNVAKFPGHTGPVKAISFSE--NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred EEEcCCccccccCCCCCCceeEEEecc--CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee
Confidence 999999999999999999999999986 666665 6789999999999888776643 345589999999999999998
Q ss_pred c-CCcEEEEeC---CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 332 R-NRTVAVWNF---RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 332 s-D~tIklWd~---~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
+ |=+|-+.+- +..++.++.+|.+. .+.|.|..+-++++++|. |...||.-
T Consensus 451 g~~l~Vy~~~k~~k~W~~~~~~~~~sg~-----st~v~Fg~~aq~l~s~sm-----------d~~l~~~a 504 (506)
T KOG0289|consen 451 GSDLQVYICKKKTKSWTEIKELADHSGL-----STGVRFGEHAQYLASTSM-----------DAILRLYA 504 (506)
T ss_pred cceeEEEEEecccccceeeehhhhcccc-----cceeeecccceEEeeccc-----------hhheEEee
Confidence 7 767777774 37789999999965 578999999999999886 88888764
No 102
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=3.8e-22 Score=213.38 Aligned_cols=319 Identities=13% Similarity=0.198 Sum_probs=245.7
Q ss_pred EEEEEee--ccEEEEeeCCCeEEeeeccc----cceeeEeecCCCceEEEEEEee------CCC-----EEEEEEeecCC
Q 011970 91 VIEIVAA--RDIVFALAHSGVCAAFSRET----NRRICFLNVSPDEVIRSLFYNK------NND-----SLITVSVYASD 153 (474)
Q Consensus 91 V~~i~~s--~~~las~s~dgtiklW~~~t----g~~l~~l~g~~~~~i~sv~fsp------dg~-----~Lis~S~~~s~ 153 (474)
-++.+|. .+-|.....|..+.+||+.. |++--.| ||..-||+|--=| ... -.+|+| +|
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~l--yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS---sD 401 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSML--YHSACIWDVENLPCNVHSPTAACLPRGCFTTCS---SD 401 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeee--eccceeeeeccccccccCcccccCCccceeEec---CC
Confidence 4566676 89999999999999999764 7777666 6888899986544 211 257776 34
Q ss_pred CccceeeeEEEEeEeccCC---C------------------------CCccceeee------ccccCceEEEEeCCCCeE
Q 011970 154 NFSSLKCRSTKIEYIRRGK---P------------------------DSGFALFES------ESLKWPGFVEFDDVNGKV 200 (474)
Q Consensus 154 d~s~Lk~~~~~iw~i~~G~---~------------------------~~~~~lf~~------~~~~~~~~V~Fs~~nGk~ 200 (474)
+ |||||++.-+. . +++.++|.. +...-+.+|+.| ||||.
T Consensus 402 ~-------TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS-p~gqh 473 (1080)
T KOG1408|consen 402 G-------TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS-PDGQH 473 (1080)
T ss_pred C-------cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC-CCcce
Confidence 4 99999985421 1 222234432 112235679998 89999
Q ss_pred EEEecCCCcEEEeecCCCeEEEEE--cCCcEEEEEEc-C--CceEEEEecCCCCccEEEEecCCC-eEEEEEeecCccee
Q 011970 201 LTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKIS-P--GIMLLIFNRSSSHVPLKILSIEDG-TVLKVFYHLLHRNK 274 (474)
Q Consensus 201 LaS~s~D~tiKlWdl~tg~~l~tl--~~~~V~~vafS-p--g~~la~~s~~s~D~tIkLWdi~tG-~~L~tl~~h~~~v~ 274 (474)
||+|..-|++||+||.+-+.+.++ |+..|.++.|| | +..|+++ ++.|.-|.++|+..- -+++|+.+|...|.
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS--asrdRlIHV~Dv~rny~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS--ASRDRLIHVYDVKRNYDLVQTLDGHSSSIT 551 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh--ccCCceEEEEecccccchhhhhccccccee
Confidence 999999999999999876644444 56789999999 7 4455544 467899999998643 35689999999999
Q ss_pred EEEEEecCC-CeEEEEeCCCcEEEEECC---CCceEEecccc----CCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-Cc
Q 011970 275 KVDFIEQFN-EKLLVKQENENLQILDVR---NAELMEVSRTE----FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE 344 (474)
Q Consensus 275 ~V~F~~~~~-~~ll~~~~D~tIkIWDv~---tg~~~~~l~~h----~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ 344 (474)
+|.|...+. -++++.+.|+.|..=-.+ +|.+. .++| ..+++.++.-|..+++++++ |+.|+|+|++ |+
T Consensus 552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f--~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK 629 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLF--PRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK 629 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhheehhccccCceec--cccccccccceEEEeeeCCCcceEEEEecccceEEEeccccc
Confidence 999976432 477788899888643222 13221 1221 13678888899999999999 9999999996 99
Q ss_pred EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCC
Q 011970 345 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 424 (474)
Q Consensus 345 ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~ 424 (474)
.+++|+|..+-. + ..-.|..-|.|-|||+.|. |+|+-+.|.-+|+|+++..||..
T Consensus 630 q~k~FKgs~~~e-G-~lIKv~lDPSgiY~atScs-----------dktl~~~Df~sgEcvA~m~GHsE------------ 684 (1080)
T KOG1408|consen 630 QVKSFKGSRDHE-G-DLIKVILDPSGIYLATSCS-----------DKTLCFVDFVSGECVAQMTGHSE------------ 684 (1080)
T ss_pred eeeeecccccCC-C-ceEEEEECCCccEEEEeec-----------CCceEEEEeccchhhhhhcCcch------------
Confidence 999999755421 1 1357889999999999986 99999999999999999999985
Q ss_pred CCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 425 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|+.|-|++|-+.|+|.+.||-|-||.
T Consensus 685 ----------------------~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 685 ----------------------AVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred ----------------------heeeeeecccchhheeecCCceEEEEE
Confidence 899999999999999999999999996
No 103
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.4e-23 Score=211.35 Aligned_cols=298 Identities=16% Similarity=0.213 Sum_probs=220.5
Q ss_pred cccccchhhhhhcccccceeecccCCCCCcccccccccccccEEEEEeec-cEEEEeeCCCeEEeeeccccceeeEeecC
Q 011970 49 RAFSISNAQERFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAAR-DIVFALAHSGVCAAFSRETNRRICFLNVS 127 (474)
Q Consensus 49 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~-~~las~s~dgtiklW~~~tg~~l~~l~g~ 127 (474)
||..++.-.+.|-. -...+++.|..-++|.+-.|. . -.+||||.||.|+|||+.+-+|+.++..
T Consensus 43 RALNAtKleR~fak-PFv~~L~gHrdGV~~lakhp~-------------~ls~~aSGs~DG~VkiWnlsqR~~~~~f~A- 107 (433)
T KOG0268|consen 43 RALNATKLERVFAK-PFVGSLDGHRDGVSCLAKHPN-------------KLSTVASGSCDGEVKIWNLSQRECIRTFKA- 107 (433)
T ss_pred HHhhhHHHHHHhhc-cchhhccccccccchhhcCcc-------------hhhhhhccccCceEEEEehhhhhhhheeec-
Confidence 34455555555554 223556888888888776665 2 4689999999999999999999999995
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC
Q 011970 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 128 ~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
|++.|+.|.+.. ....|++ +| ++++.|-+. |.+..+ ......+--+....+ +...|+|++
T Consensus 108 H~G~V~Gi~v~~--~~~~tvg----dD------KtvK~wk~~-~~p~~t--ilg~s~~~gIdh~~~----~~~FaTcGe- 167 (433)
T KOG0268|consen 108 HEGLVRGICVTQ--TSFFTVG----DD------KTVKQWKID-GPPLHT--ILGKSVYLGIDHHRK----NSVFATCGE- 167 (433)
T ss_pred ccCceeeEEecc--cceEEec----CC------cceeeeecc-CCccee--eeccccccccccccc----cccccccCc-
Confidence 989999999988 4456764 67 788888853 333221 111111111112222 346788875
Q ss_pred CcEEEeecCCCeEEEEEc--CCcEEEEEEcCC--ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCC
Q 011970 208 SIYKVFDLKNYTMLYSIS--DKHVQEIKISPG--IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 283 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg--~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~ 283 (474)
.|-|||..--.++.+++ .+.|.+|+|+|. ..|+++ .+|+.|-|+|+.++++|+...- .-+..+|+|+| ..
T Consensus 168 -~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~---~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnP-ea 241 (433)
T KOG0268|consen 168 -QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC---ASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNP-EA 241 (433)
T ss_pred -eeeecccccCCccceeecCCCceeEEecCCCcchheeee---ccCCceEEEecccCCccceeee-eccccceecCc-cc
Confidence 48999987667777766 578999999994 444443 5689999999999999987652 24668899986 66
Q ss_pred CeEEEEeCCCcEEEEECCCC-ceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCC
Q 011970 284 EKLLVKQENENLQILDVRNA-ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCN 360 (474)
Q Consensus 284 ~~ll~~~~D~tIkIWDv~tg-~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~ 360 (474)
-.+.++.+|.++..+|++.- +.+.+..+|...|..|.|||-|+-|+||| |+||+|+.++ |.---.. |+-. ...
T Consensus 242 fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY--htkR--Mq~ 317 (433)
T KOG0268|consen 242 FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY--HTKR--MQH 317 (433)
T ss_pred cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh--hHhh--hhe
Confidence 77888899999999999984 46788899999999999999999999999 9999999995 5422111 2111 112
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 011970 361 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 402 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~ 402 (474)
|-+|.+|-|.++|+|||. |+.||||-..--+
T Consensus 318 V~~Vk~S~Dskyi~SGSd-----------d~nvRlWka~Ase 348 (433)
T KOG0268|consen 318 VFCVKYSMDSKYIISGSD-----------DGNVRLWKAKASE 348 (433)
T ss_pred eeEEEEeccccEEEecCC-----------Ccceeeeecchhh
Confidence 789999999999999987 9999999854333
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=5.8e-23 Score=198.55 Aligned_cols=226 Identities=15% Similarity=0.218 Sum_probs=178.5
Q ss_pred CCCeEEEEecCCCcEEEeecCC-C--eEEEEEcC--CcEEEEEEc-C--CceEEEEecCCCCccEEEEecCCCeEE--EE
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKN-Y--TMLYSISD--KHVQEIKIS-P--GIMLLIFNRSSSHVPLKILSIEDGTVL--KV 265 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~t-g--~~l~tl~~--~~V~~vafS-p--g~~la~~s~~s~D~tIkLWdi~tG~~L--~t 265 (474)
--|+.||+++.|++|||+.+.+ + +++.+|.+ ..||.|+|- | |..||++ +.|+.|-||.-++|+-- ..
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLASc---sYDgkVIiWke~~g~w~k~~e 97 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASC---SYDGKVIIWKEENGRWTKAYE 97 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEe---ecCceEEEEecCCCchhhhhh
Confidence 3599999999999999999874 3 46677754 689999999 7 7777765 77999999998888543 34
Q ss_pred EeecCcceeEEEEEecCCCeEEE-EeCCCcEEEEECCCC-c-e-EEeccccCCceEEEEEcCC---C-----------cE
Q 011970 266 FYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNA-E-L-MEVSRTEFMTPSAFIFLYE---N-----------QL 327 (474)
Q Consensus 266 l~~h~~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv~tg-~-~-~~~l~~h~~~v~sv~Fspd---g-----------~l 327 (474)
+..|...|.+|+|-|..=+.+|+ ++.||+|.|.+.++. . + .+....|...|.++.+.|- | +.
T Consensus 98 ~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 98 HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence 55788999999998654455555 689999999998864 2 2 2346779999999999886 5 67
Q ss_pred EEEEc-CCcEEEEeCC-C--cEEEEeccCCCCcCCCCeeEEEECCC----CCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 328 FLTFR-NRTVAVWNFR-G--ELVTSFEDHLLWHPDCNTNNIYITSD----QDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 328 laS~s-D~tIklWd~~-G--~ll~tl~gH~~~~~~~~v~svafSpD----g~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
|+|++ |.+||||+++ + ++-++|++|.+| |+.||+.|. ..+|||+|. ||++-||-..
T Consensus 178 lvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw-----VRDVAwaP~~gl~~s~iAS~Sq-----------Dg~viIwt~~ 241 (299)
T KOG1332|consen 178 LVSGGCDNLVKIWKFDSDSWKLERTLEGHKDW-----VRDVAWAPSVGLPKSTIASCSQ-----------DGTVIIWTKD 241 (299)
T ss_pred eeccCCccceeeeecCCcchhhhhhhhhcchh-----hhhhhhccccCCCceeeEEecC-----------CCcEEEEEec
Confidence 99998 9999999996 5 455689999999 678999996 478999876 9999999753
Q ss_pred C--CeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 400 T--GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 400 t--G~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
. ++--.|+. |. +|. .|+.+.||+-|+.|+-++.|+.|.||.
T Consensus 242 ~e~e~wk~tll-~~-f~~-------------------------------~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 242 EEYEPWKKTLL-EE-FPD-------------------------------VVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred CccCccccccc-cc-CCc-------------------------------ceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1 11111221 11 222 799999999999999999999999994
No 105
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=2.4e-22 Score=214.75 Aligned_cols=326 Identities=13% Similarity=0.112 Sum_probs=229.5
Q ss_pred ccceeecccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEEeeeccccc---------------------ee-
Q 011970 64 HLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNR---------------------RI- 121 (474)
Q Consensus 64 ~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~---------------------~l- 121 (474)
....+.++|..+++...|..+ .. ..-+|||+|+|.+||||.+.-+- ++
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~--~~--------~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~ 251 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARL--GG--------DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILE 251 (764)
T ss_pred eEEEEeeccchhhhhhhhhcc--CC--------CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeee
Confidence 444566777777776665555 11 13579999999999999976433 22
Q ss_pred --e------EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEe-----------ccCCCCCccceeee
Q 011970 122 --C------FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI-----------RRGKPDSGFALFES 182 (474)
Q Consensus 122 --~------~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i-----------~~G~~~~~~~lf~~ 182 (474)
. +|.-+|+++|+||-++|.+..|.|+|+| .+.-||-. +-|+.- .
T Consensus 252 ~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaD----------ksmiiW~pd~~tGiWv~~vRlGe~g-------g 314 (764)
T KOG1063|consen 252 EIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASAD----------KSMIIWKPDENTGIWVDVVRLGEVG-------G 314 (764)
T ss_pred eEEEEEehhhhhcCcccceEEEEEccchhhheecccC----------cceEEEecCCccceEEEEEEeeccc-------c
Confidence 2 3443499999999999999888888754 35555542 233320 0
Q ss_pred ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCC-CeEE--EEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEe
Q 011970 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTML--YSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILS 256 (474)
Q Consensus 183 ~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t-g~~l--~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWd 256 (474)
...+ -+..-|+ ||+..+.+-+.-|-.++|--++ ..+. ..++ -+.|.+|+++| |..|++. |-|+|-||+-
T Consensus 315 ~a~G-F~g~lw~-~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsv---s~DQTTRlFa 389 (764)
T KOG1063|consen 315 SAGG-FWGGLWS-PNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSV---SLDQTTRLFA 389 (764)
T ss_pred cccc-eeeEEEc-CCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEe---ccccceeeec
Confidence 0111 2246787 7999999999999999998332 2222 2333 46899999998 7777765 6689999975
Q ss_pred cCCCeE--EEEE---eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECC------------------------------
Q 011970 257 IEDGTV--LKVF---YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR------------------------------ 301 (474)
Q Consensus 257 i~tG~~--L~tl---~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~------------------------------ 301 (474)
-- |.. -+.+ +-|.+-..+++|.+ .+-+++++.+.+-+|+++.-
T Consensus 390 ~w-g~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaL 467 (764)
T KOG1063|consen 390 RW-GRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPAL 467 (764)
T ss_pred cc-ccccceeeecccccccccceeeehcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccc
Confidence 32 221 1222 24667778888874 23444444444444544321
Q ss_pred -------------CCc----eE-----------------------------EeccccCCceEEEEEcCCCcEEEEEc-C-
Q 011970 302 -------------NAE----LM-----------------------------EVSRTEFMTPSAFIFLYENQLFLTFR-N- 333 (474)
Q Consensus 302 -------------tg~----~~-----------------------------~~l~~h~~~v~sv~Fspdg~llaS~s-D- 333 (474)
+|. |. +.+-||...|++++.+|+|+++||++ -
T Consensus 468 GLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~ 547 (764)
T KOG1063|consen 468 GLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSS 547 (764)
T ss_pred cccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhC
Confidence 111 01 12467889999999999999999985 2
Q ss_pred ----CcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE----E
Q 011970 334 ----RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC----L 404 (474)
Q Consensus 334 ----~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c----l 404 (474)
--|+||+.. -..++.|++|+.. |..++|||||++|+|.|. |.++.||+.+.+.. .
T Consensus 548 ~~ehAvI~lw~t~~W~~~~~L~~HsLT-----VT~l~FSpdg~~LLsvsR-----------DRt~sl~~~~~~~~~e~~f 611 (764)
T KOG1063|consen 548 LKEHAVIRLWNTANWLQVQELEGHSLT-----VTRLAFSPDGRYLLSVSR-----------DRTVSLYEVQEDIKDEFRF 611 (764)
T ss_pred CccceEEEEEeccchhhhheecccceE-----EEEEEECCCCcEEEEeec-----------CceEEeeeeecccchhhhh
Confidence 268999995 6778889999987 789999999999999987 99999999754332 3
Q ss_pred EEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 405 AKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 405 ~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
+.++.|+. -||+..|+||++.+||+|+|++|++|.
T Consensus 612 a~~k~HtR----------------------------------IIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 612 ACLKAHTR----------------------------------IIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred ccccccce----------------------------------EEEEcccCcccceeEEecCCceEEEEe
Confidence 34677774 899999999999999999999999995
No 106
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.6e-22 Score=197.99 Aligned_cols=299 Identities=13% Similarity=0.152 Sum_probs=209.7
Q ss_pred eEEeeecccccee-----eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeec
Q 011970 109 VCAAFSRETNRRI-----CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESE 183 (474)
Q Consensus 109 tiklW~~~tg~~l-----~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~ 183 (474)
..+-|+.++.++. .+|.| |...|..++||.||++|||++ +| ++|+||++++=..-.-.-+-..-
T Consensus 62 r~~~~k~~q~~f~Hpl~~~~LKg-H~~~vt~~~FsSdGK~lat~~----~D------r~Ir~w~~~DF~~~eHr~~R~nv 130 (420)
T KOG2096|consen 62 RNDQWKAKQPTFVHPLNVSVLKG-HKKEVTDVAFSSDGKKLATIS----GD------RSIRLWDVRDFENKEHRCIRQNV 130 (420)
T ss_pred chhhhcccCCCcccchhhhhhhc-cCCceeeeEEcCCCceeEEEe----CC------ceEEEEecchhhhhhhhHhhccc
Confidence 3556666655543 36776 778899999999999999987 56 89999998641110000011111
Q ss_pred cccCceEEEEeCCCCe-EEEEecCCCcEEEeecC---CCeEEE-EEc-C---------CcEEEEEEcCCceEEEEecCCC
Q 011970 184 SLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLK---NYTMLY-SIS-D---------KHVQEIKISPGIMLLIFNRSSS 248 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk-~LaS~s~D~tiKlWdl~---tg~~l~-tl~-~---------~~V~~vafSpg~~la~~s~~s~ 248 (474)
...+|..|+|+ ||-+ ++++.....++.++-+. .|..-+ ..+ + -.|.++-+-.+..++.+ ++.
T Consensus 131 e~dhpT~V~Fa-pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~ims--as~ 207 (420)
T KOG2096|consen 131 EYDHPTRVVFA-PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMS--ASL 207 (420)
T ss_pred cCCCceEEEEC-CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEE--ecC
Confidence 25688899998 5765 56677777788888753 333211 111 1 23555556554444433 366
Q ss_pred CccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECC---CCceEE-----eccccCCceEEEE
Q 011970 249 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR---NAELME-----VSRTEFMTPSAFI 320 (474)
Q Consensus 249 D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~---tg~~~~-----~l~~h~~~v~sv~ 320 (474)
|.+|-||++. |+.|.+....+..+.-.+.+ |+|..+++++.---|++|.+- .|+..+ .|.||...|.+++
T Consensus 208 dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~a 285 (420)
T KOG2096|consen 208 DTKICLWDLK-GQLLQSIDTNQSSNYDAAVS-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAA 285 (420)
T ss_pred CCcEEEEecC-CceeeeeccccccccceeeC-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeee
Confidence 8999999998 99999998665555556655 777777778898999999864 344332 3799999999999
Q ss_pred EcCCCcEEEEEc-CCcEEEEeCC-----Cc---EEEEecc--CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 011970 321 FLYENQLFLTFR-NRTVAVWNFR-----GE---LVTSFED--HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 389 (474)
Q Consensus 321 Fspdg~llaS~s-D~tIklWd~~-----G~---ll~tl~g--H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~ 389 (474)
|||+.+.++|.| ||++||||.+ |+ +|+++.. |..- ...+ -++.||.|+.||-..
T Consensus 286 Fsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag--~~p~-RL~lsP~g~~lA~s~------------ 350 (420)
T KOG2096|consen 286 FSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAG--SEPV-RLELSPSGDSLAVSF------------ 350 (420)
T ss_pred eCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcC--CCce-EEEeCCCCcEEEeec------------
Confidence 999999999999 9999999964 22 3443311 1110 0112 689999999999765
Q ss_pred CCeEEEEeCCCCeEEEEecC-CCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCc
Q 011970 390 AGSINVSSILTGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 468 (474)
Q Consensus 390 DgtIklWdi~tG~cl~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dgt 468 (474)
..++++...++|+-.-+++. |.. .|.+++|+|||++|||.+ |.-
T Consensus 351 gs~l~~~~se~g~~~~~~e~~h~~----------------------------------~Is~is~~~~g~~~atcG-dr~ 395 (420)
T KOG2096|consen 351 GSDLKVFASEDGKDYPELEDIHST----------------------------------TISSISYSSDGKYIATCG-DRY 395 (420)
T ss_pred CCceEEEEcccCccchhHHHhhcC----------------------------------ceeeEEecCCCcEEeeec-cee
Confidence 46799999999987777643 553 899999999999999998 555
Q ss_pred EEEcc
Q 011970 469 VHVWS 473 (474)
Q Consensus 469 VklWd 473 (474)
|+|-.
T Consensus 396 vrv~~ 400 (420)
T KOG2096|consen 396 VRVIR 400 (420)
T ss_pred eeeec
Confidence 66543
No 107
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.90 E-value=4.9e-22 Score=220.64 Aligned_cols=282 Identities=13% Similarity=0.134 Sum_probs=219.4
Q ss_pred ccccccc-EEEEEee--ccEEEEee--CCCeEEeeeccc------------cceeeEeecCCCceEEEEEEeeCCCEEEE
Q 011970 84 FLMKRTK-VIEIVAA--RDIVFALA--HSGVCAAFSRET------------NRRICFLNVSPDEVIRSLFYNKNNDSLIT 146 (474)
Q Consensus 84 ~~~~~~~-V~~i~~s--~~~las~s--~dgtiklW~~~t------------g~~l~~l~g~~~~~i~sv~fspdg~~Lis 146 (474)
.+.|..+ |-+|... +..+|+|. .||.+++|+.+. .+.+|++.- |...|.+|.|||||++||+
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~-h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDD-HDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecc-ccCceeEEEECCCCCeEee
Confidence 3445444 4455555 88999999 999999998762 456888885 8899999999999999999
Q ss_pred EEeecCCCccceeeeEEEEeEeccCCCCCccceeee-----------------ccccCceEEEEeCCCCeEEEEecCCCc
Q 011970 147 VSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES-----------------ESLKWPGFVEFDDVNGKVLTYSAQDSI 209 (474)
Q Consensus 147 ~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~-----------------~~~~~~~~V~Fs~~nGk~LaS~s~D~t 209 (474)
|+|| +.+-||.-.. .. ....|.. +|-.-|-.|+++ ||+.+|||+|.|++
T Consensus 87 ----GSDD------~~v~iW~~~~-~~--~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws-p~~~~lvS~s~Dns 152 (942)
T KOG0973|consen 87 ----GSDD------RLVMIWERAE-IG--SGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS-PDDSLLVSVSLDNS 152 (942)
T ss_pred ----ccCc------ceEEEeeecc-cC--CcccccccccccccceeeEEEEEecCCCccceeccC-CCccEEEEecccce
Confidence 5589 8999998552 11 1112211 233335568998 79999999999999
Q ss_pred EEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeec------CcceeEEEEEe
Q 011970 210 YKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL------LHRNKKVDFIE 280 (474)
Q Consensus 210 iKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h------~~~v~~V~F~~ 280 (474)
|-|||..+.+++.++.+ ..|-.|.|-| |.++|+- ++|++||+|++.+-.+.++...+ ......+.++
T Consensus 153 Viiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASq---sdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS- 228 (942)
T KOG0973|consen 153 VIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQ---SDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS- 228 (942)
T ss_pred EEEEccccceeeeeeecccccccceEECCccCeeeee---cCCceEEEEEcccceeeEeeccchhhCCCcceeeecccC-
Confidence 99999999999998865 5799999999 7777765 66999999998887788887754 2345788887
Q ss_pred cCCCeEEEE-e---CCCcEEEEECCCCceEEeccccCCceEEEEEcC-----CCc------------EEEEEc-CCcEEE
Q 011970 281 QFNEKLLVK-Q---ENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-----ENQ------------LFLTFR-NRTVAV 338 (474)
Q Consensus 281 ~~~~~ll~~-~---~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fsp-----dg~------------llaS~s-D~tIkl 338 (474)
|||++|++. + .-.++.|.+-.+-++-..|.||...+..+.|+| ..+ .+|+|+ |++|-|
T Consensus 229 PDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSV 308 (942)
T KOG0973|consen 229 PDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSV 308 (942)
T ss_pred CCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEE
Confidence 788888885 3 457899999888888888999999999999987 111 678889 999999
Q ss_pred EeC-CCcEE---EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 011970 339 WNF-RGELV---TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 402 (474)
Q Consensus 339 Wd~-~G~ll---~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~ 402 (474)
|+. .-+.+ +.+-++ .|..+.+||||-.|..+|. ||+|.+-.++..+
T Consensus 309 W~T~~~RPl~vi~~lf~~-------SI~DmsWspdG~~LfacS~-----------DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 309 WNTALPRPLFVIHNLFNK-------SIVDMSWSPDGFSLFACSL-----------DGTVALIHFEEKE 358 (942)
T ss_pred EecCCCCchhhhhhhhcC-------ceeeeeEcCCCCeEEEEec-----------CCeEEEEEcchHH
Confidence 998 33432 233333 2789999999999998876 9999999987644
No 108
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=1.5e-21 Score=208.72 Aligned_cols=325 Identities=14% Similarity=0.162 Sum_probs=230.3
Q ss_pred cccEEEEEeeccEEEEeeCCCeEEeeeccccc--eeeEeecCCCceE-EEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 88 RTKVIEIVAARDIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVI-RSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 88 ~~~V~~i~~s~~~las~s~dgtiklW~~~tg~--~l~~l~g~~~~~i-~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
...+..|..--...++.+-|+++.+|+.+.-+ |+..++....+.| -++++.||.+..+.+ -|+.+ ..+.
T Consensus 101 ~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla--~Ggs~------~~v~ 172 (764)
T KOG1063|consen 101 CKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLA--CGGSK------FVVD 172 (764)
T ss_pred ceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEE--ecCcc------eEEE
Confidence 34445555544555556889999999987666 5666666444433 377888876665553 25566 5555
Q ss_pred EeEeccCCCCCccc-eeee-ccccCceEEEEeCCCC--eEEEEecCCCcEEEeecCCCe---------------------
Q 011970 165 IEYIRRGKPDSGFA-LFES-ESLKWPGFVEFDDVNG--KVLTYSAQDSIYKVFDLKNYT--------------------- 219 (474)
Q Consensus 165 iw~i~~G~~~~~~~-lf~~-~~~~~~~~V~Fs~~nG--k~LaS~s~D~tiKlWdl~tg~--------------------- 219 (474)
|..-..+++ . +-+. +|..||.+++|..+-| -+|||+|||..||||.+.-+.
T Consensus 173 ~~s~~~d~f----~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~ 248 (764)
T KOG1063|consen 173 LYSSSADSF----ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFM 248 (764)
T ss_pred EeccCCcce----eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceee
Confidence 544333332 2 1222 4788999999986544 489999999999999864222
Q ss_pred EE----EE--------EcCCcEEEEEEcCCc-eEEEEecCCCCccEEEEecC--CCeEEEEEe-----ecCcceeEEEEE
Q 011970 220 ML----YS--------ISDKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIE--DGTVLKVFY-----HLLHRNKKVDFI 279 (474)
Q Consensus 220 ~l----~t--------l~~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~--tG~~L~tl~-----~h~~~v~~V~F~ 279 (474)
++ |. .|++||.++-++|.+ +|+++ |.|+++-+|.-. ||--+-+.+ |....-+..-|+
T Consensus 249 ~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSA---SaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~ 325 (764)
T KOG1063|consen 249 ILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSA---SADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWS 325 (764)
T ss_pred eeeeEEEEEehhhhhcCcccceEEEEEccchhhheec---ccCcceEEEecCCccceEEEEEEeecccccccceeeEEEc
Confidence 22 11 135799999999844 77775 668999999654 343333333 223345888887
Q ss_pred ecCCCeEEEEeCCCcEEEEE-CCCCceEE--eccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-------------
Q 011970 280 EQFNEKLLVKQENENLQILD-VRNAELME--VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR------------- 342 (474)
Q Consensus 280 ~~~~~~ll~~~~D~tIkIWD-v~tg~~~~--~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~------------- 342 (474)
+ ++..+++-+.-|-.++|- ....++.+ ...||++.|..+++.|.|.+|+|.+ |+|-||.-.-
T Consensus 326 ~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQ 404 (764)
T KOG1063|consen 326 P-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQ 404 (764)
T ss_pred C-CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccc
Confidence 4 455666678999999998 33444443 4689999999999999999999999 9999984311
Q ss_pred --C---cEE-----------------------------------------------------------------------
Q 011970 343 --G---ELV----------------------------------------------------------------------- 346 (474)
Q Consensus 343 --G---~ll----------------------------------------------------------------------- 346 (474)
| +|+
T Consensus 405 iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~ 484 (764)
T KOG1063|consen 405 IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGE 484 (764)
T ss_pred cccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccc
Confidence 1 011
Q ss_pred ----------------------------------EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe
Q 011970 347 ----------------------------------TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 392 (474)
Q Consensus 347 ----------------------------------~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dgt 392 (474)
+.|-||..- |.+++++|+|++|||+|+|..- +---
T Consensus 485 ~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyE-----v~~l~~s~~gnliASaCKS~~~------ehAv 553 (764)
T KOG1063|consen 485 AAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYE-----VYALAISPTGNLIASACKSSLK------EHAV 553 (764)
T ss_pred cceeeecccccCchhccCCChHHHHHHhccchhhHHhccCcee-----EEEEEecCCCCEEeehhhhCCc------cceE
Confidence 112244433 7899999999999999984221 2356
Q ss_pred EEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEc
Q 011970 393 INVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 472 (474)
Q Consensus 393 IklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklW 472 (474)
|+||+..+-+.++.|++|+. .|+.++|||||++|+|.|+|.|+.||
T Consensus 554 I~lw~t~~W~~~~~L~~HsL----------------------------------TVT~l~FSpdg~~LLsvsRDRt~sl~ 599 (764)
T KOG1063|consen 554 IRLWNTANWLQVQELEGHSL----------------------------------TVTRLAFSPDGRYLLSVSRDRTVSLY 599 (764)
T ss_pred EEEEeccchhhhheecccce----------------------------------EEEEEEECCCCcEEEEeecCceEEee
Confidence 99999988888889999996 89999999999999999999999999
Q ss_pred c
Q 011970 473 S 473 (474)
Q Consensus 473 d 473 (474)
.
T Consensus 600 ~ 600 (764)
T KOG1063|consen 600 E 600 (764)
T ss_pred e
Confidence 5
No 109
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=2.8e-21 Score=209.81 Aligned_cols=305 Identities=13% Similarity=0.148 Sum_probs=238.3
Q ss_pred EEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcccee
Q 011970 101 VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF 180 (474)
Q Consensus 101 las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf 180 (474)
|+-|++.|-++|||+.||+.++++++ +...|.++-=+|==+.+|. |..+ .+|-|.+++.++.+- -|
T Consensus 175 IvvGs~~G~lql~Nvrt~K~v~~f~~-~~s~IT~ieqsPaLDVVai----G~~~------G~ViifNlK~dkil~---sF 240 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGKVVYTFQE-FFSRITAIEQSPALDVVAI----GLEN------GTVIIFNLKFDKILM---SF 240 (910)
T ss_pred EEEeecCCcEEEEEeccCcEEEEecc-cccceeEeccCCcceEEEE----eccC------ceEEEEEcccCcEEE---EE
Confidence 56789999999999999999999997 5588999999997776665 5566 799999999999743 24
Q ss_pred eeccccCceEEEEeCCCCe-EEEEecCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcCCceEEEEecCCCCccEEEE-
Q 011970 181 ESESLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISPGIMLLIFNRSSSHVPLKIL- 255 (474)
Q Consensus 181 ~~~~~~~~~~V~Fs~~nGk-~LaS~s~D~tiKlWdl~tg~~l~tl~---~~~V~~vafSpg~~la~~s~~s~D~tIkLW- 255 (474)
.+. .+.|.+++|. .||. +||+|..-|.+-+|||+.-+++..+. ...|....|-||.-++.++ +.|..+|+|
T Consensus 241 k~d-~g~VtslSFr-tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta--~~DnSlk~~v 316 (910)
T KOG1539|consen 241 KQD-WGRVTSLSFR-TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTA--GADNSLKVWV 316 (910)
T ss_pred Ecc-ccceeEEEec-cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeec--cCCCceeEEE
Confidence 442 5667799998 5786 57777788999999998877765554 3568888888877666653 557888887
Q ss_pred -ecCCC--eEEEEEeecCcceeEEEEEecCC-------------------------------------------------
Q 011970 256 -SIEDG--TVLKVFYHLLHRNKKVDFIEQFN------------------------------------------------- 283 (474)
Q Consensus 256 -di~tG--~~L~tl~~h~~~v~~V~F~~~~~------------------------------------------------- 283 (474)
|..+| ..|+.=.||..+-..+.|....+
T Consensus 317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p 396 (910)
T KOG1539|consen 317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLP 396 (910)
T ss_pred eeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCC
Confidence 53344 33443334444333333321100
Q ss_pred ----------------------------------------------------------------CeEEEEeCCCcEEEEE
Q 011970 284 ----------------------------------------------------------------EKLLVKQENENLQILD 299 (474)
Q Consensus 284 ----------------------------------------------------------------~~ll~~~~D~tIkIWD 299 (474)
...++|...|+|-++|
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 0233455789999999
Q ss_pred CCCCceEEec---cccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEE
Q 011970 300 VRNAELMEVS---RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLII 374 (474)
Q Consensus 300 v~tg~~~~~l---~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~La 374 (474)
+++|-....+ ..|.+.|..++.-.-+++++|++ ||-++.||+. ..++.++.--.. +..+..+....++|
T Consensus 477 mQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~------~~~iv~hr~s~l~a 550 (910)
T KOG1539|consen 477 MQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSS------ITGIVYHRVSDLLA 550 (910)
T ss_pred cccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCC------cceeeeeehhhhhh
Confidence 9999988877 47999999999999999999998 9999999996 777777752211 34566677888888
Q ss_pred EEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEc
Q 011970 375 SYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD 454 (474)
Q Consensus 375 S~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafS 454 (474)
.++. |-.|++.|+.|.+.++.|.||++ .|+++.||
T Consensus 551 ~~~d-----------df~I~vvD~~t~kvvR~f~gh~n----------------------------------ritd~~FS 585 (910)
T KOG1539|consen 551 IALD-----------DFSIRVVDVVTRKVVREFWGHGN----------------------------------RITDMTFS 585 (910)
T ss_pred hhcC-----------ceeEEEEEchhhhhhHHhhcccc----------------------------------ceeeeEeC
Confidence 8887 99999999999999999999997 89999999
Q ss_pred CCCCEEEEEcCCCcEEEccC
Q 011970 455 EERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 455 pDg~~LaSgs~DgtVklWd~ 474 (474)
|||+.|+|++.|++||+||.
T Consensus 586 ~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 586 PDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred CCCcEEEEeecCCcEEEEec
Confidence 99999999999999999995
No 110
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.89 E-value=6.1e-22 Score=203.04 Aligned_cols=233 Identities=14% Similarity=0.185 Sum_probs=197.7
Q ss_pred ceEEEEeCCCC--eEEEEecCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEE
Q 011970 188 PGFVEFDDVNG--KVLTYSAQDSIYKVFDLKNYTMLYSISDK--HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263 (474)
Q Consensus 188 ~~~V~Fs~~nG--k~LaS~s~D~tiKlWdl~tg~~l~tl~~~--~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L 263 (474)
++..+|+ +.+ ..+.+|+.|.++-++|...++.+.++.++ .|.++.|+|+...+.. ++.|..|++|+..+..+-
T Consensus 220 pgi~ald-~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~--aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALD-IIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVIT--ASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEe-ecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheee--cCCcceEEeeccccccCc
Confidence 4456665 444 57889999999999999999999888764 6999999997666555 466899999999988888
Q ss_pred EEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccc--cCCceEEEEEcCCCcEEEEEc-CCcEEEEe
Q 011970 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT--EFMTPSAFIFLYENQLFLTFR-NRTVAVWN 340 (474)
Q Consensus 264 ~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~--h~~~v~sv~Fspdg~llaS~s-D~tIklWd 340 (474)
.....|...|..+... |.|+++++++.|++.-.-|+++|.++.+-.. ....+.+.+|.|||-+|.++. |+.|||||
T Consensus 297 ~~~~~h~~~V~~ls~h-~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLH-PTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWD 375 (506)
T ss_pred cccccccccceeeeec-cCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEE
Confidence 8888888999999875 7899999999999999999999998866443 334688999999999999999 99999999
Q ss_pred C-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccc
Q 011970 341 F-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDE 419 (474)
Q Consensus 341 ~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~ 419 (474)
+ ++.-+..|.||.+. |.+|+|+.+|-+||+++. |+.|+|||+.--+..+++.-.+.
T Consensus 376 lks~~~~a~Fpght~~-----vk~i~FsENGY~Lat~ad-----------d~~V~lwDLRKl~n~kt~~l~~~------- 432 (506)
T KOG0289|consen 376 LKSQTNVAKFPGHTGP-----VKAISFSENGYWLATAAD-----------DGSVKLWDLRKLKNFKTIQLDEK------- 432 (506)
T ss_pred cCCccccccCCCCCCc-----eeEEEeccCceEEEEEec-----------CCeEEEEEehhhcccceeecccc-------
Confidence 9 48899999999998 799999999999999987 99999999977676677654432
Q ss_pred cCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 420 LGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
..|.++.|++-|++|+.++.|=+|++.+
T Consensus 433 --------------------------~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 433 --------------------------KEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred --------------------------ccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 1588999999999999999888777643
No 111
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.6e-20 Score=180.16 Aligned_cols=239 Identities=13% Similarity=0.171 Sum_probs=192.2
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCC------Ce----------EEEEEc-CCcEEEEEEcC-CceEEEEecC
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN------YT----------MLYSIS-DKHVQEIKISP-GIMLLIFNRS 246 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t------g~----------~l~tl~-~~~V~~vafSp-g~~la~~s~~ 246 (474)
...+.+|+|. |+|++-|-||..+|.||--... +. |..+-+ ...|.++++|| |..+|++
T Consensus 32 sqairav~fh-p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg--- 107 (350)
T KOG0641|consen 32 SQAIRAVAFH-PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG--- 107 (350)
T ss_pred hhheeeEEec-CCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec---
Confidence 3457799997 8999999999999999974321 11 111111 35799999998 5555553
Q ss_pred CCCccEEEEecCCCeEE-----EEEeecCcceeEEEEEe--cCCCeEEEE-e-CCCcEEEEECCCCceEEeccccCCceE
Q 011970 247 SSHVPLKILSIEDGTVL-----KVFYHLLHRNKKVDFIE--QFNEKLLVK-Q-ENENLQILDVRNAELMEVSRTEFMTPS 317 (474)
Q Consensus 247 s~D~tIkLWdi~tG~~L-----~tl~~h~~~v~~V~F~~--~~~~~ll~~-~-~D~tIkIWDv~tg~~~~~l~~h~~~v~ 317 (474)
+.|++||+.-...-+|- ..|+-|.+.++.++|.+ ..++.||++ + .|..|.|=|..+|+.++-+.||++.+-
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghil 187 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHIL 187 (350)
T ss_pred CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEE
Confidence 77999999866554443 35777889999999964 234666664 3 789999999999999999999999998
Q ss_pred EEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEecc--CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 011970 318 AFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED--HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 393 (474)
Q Consensus 318 sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~g--H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtI 393 (474)
++ ++-+|-.|+|+| |+||+.||++ ..|+.++.. |..-.....|.+|+..|.|++||||-. |.+-
T Consensus 188 al-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~-----------dssc 255 (350)
T KOG0641|consen 188 AL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA-----------DSSC 255 (350)
T ss_pred EE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-----------CCce
Confidence 87 888999999999 9999999998 889987753 222111234789999999999999865 8889
Q ss_pred EEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 394 NVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 394 klWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|+||.-|+.++.+..|+. .|.+|-|||--.+|.++|.|..|||=|
T Consensus 256 ~lydirg~r~iq~f~phsa----------------------------------dir~vrfsp~a~yllt~syd~~ikltd 301 (350)
T KOG0641|consen 256 MLYDIRGGRMIQRFHPHSA----------------------------------DIRCVRFSPGAHYLLTCSYDMKIKLTD 301 (350)
T ss_pred EEEEeeCCceeeeeCCCcc----------------------------------ceeEEEeCCCceEEEEecccceEEEee
Confidence 9999999999999999986 899999999999999999999999865
No 112
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.7e-20 Score=200.33 Aligned_cols=277 Identities=18% Similarity=0.194 Sum_probs=215.6
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEE
Q 011970 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 202 (474)
Q Consensus 123 ~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~La 202 (474)
+++ +....|.|+|||.+...||.+ -.+ ..+.||++..+=+.. +.++...-.++.+++|+ +|..|-
T Consensus 20 f~d-~~Ps~I~slA~s~kS~~lAvs----Rt~------g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~--e~~RLF 84 (691)
T KOG2048|consen 20 FVD-YKPSEIVSLAYSHKSNQLAVS----RTD------GNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWA--EGGRLF 84 (691)
T ss_pred EEe-eeccceEEEEEeccCCceeee----ccC------CcEEEEccCCCceee--EEEecCCCCceeeEEEc--cCCeEE
Confidence 444 344679999999999888863 234 589999988765532 22332234678899997 455788
Q ss_pred EecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEE--EeecCcceeEEE
Q 011970 203 YSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV--FYHLLHRNKKVD 277 (474)
Q Consensus 203 S~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~t--l~~h~~~v~~V~ 277 (474)
|.+.+|+|--||+.+++.++.+. +..||+++++| +..++++ .+|+-+.+.++..+++... |.-..+++.+|+
T Consensus 85 S~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Ig---cddGvl~~~s~~p~~I~~~r~l~rq~sRvLsls 161 (691)
T KOG2048|consen 85 SSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIG---CDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLS 161 (691)
T ss_pred eecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEee---cCCceEEEEecCCceEEEEeecccccceEEEEE
Confidence 99999999999999999999886 57899999998 6666665 4577889999988877543 333348999999
Q ss_pred EEecCCCeEEEEeCCCcEEEEECCCCceEE-----e---ccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEE
Q 011970 278 FIEQFNEKLLVKQENENLQILDVRNAELME-----V---SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVT 347 (474)
Q Consensus 278 F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~-----~---l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~ 347 (474)
|. +++-++++|+.|+-|++||+.++..+. + .++..--||+|.|..|+++ +||. -|+|+.||.. |.+++
T Consensus 162 w~-~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI-~sgDS~G~V~FWd~~~gTLiq 239 (691)
T KOG2048|consen 162 WN-PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTI-ASGDSAGTVTFWDSIFGTLIQ 239 (691)
T ss_pred ec-CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcE-EEecCCceEEEEcccCcchhh
Confidence 97 667789999999999999999998665 2 2335567999999988865 5664 9999999995 99999
Q ss_pred EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE--EE--EecCCCCCCCCccccCCC
Q 011970 348 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LA--KINATNCSPKVDDELGSS 423 (474)
Q Consensus 348 tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c--l~--tl~gH~~~~~~~~~~~~~ 423 (474)
++..|..- |.+++..+++++++|++. |+.|-.....+++- +. ....|..
T Consensus 240 S~~~h~ad-----Vl~Lav~~~~d~vfsaGv-----------d~~ii~~~~~~~~~~wv~~~~r~~h~h----------- 292 (691)
T KOG2048|consen 240 SHSCHDAD-----VLALAVADNEDRVFSAGV-----------DPKIIQYSLTTNKSEWVINSRRDLHAH----------- 292 (691)
T ss_pred hhhhhhcc-----eeEEEEcCCCCeEEEccC-----------CCceEEEEecCCccceeeeccccCCcc-----------
Confidence 99999875 799999999999999876 88877776555433 11 1123432
Q ss_pred CCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEE
Q 011970 424 STGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 471 (474)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVkl 471 (474)
+|.+++..++ .|+||+.|.++.+
T Consensus 293 -----------------------dvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 293 -----------------------DVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred -----------------------cceeeeeecc--eEEecceeeEEEE
Confidence 8999999998 8999999998754
No 113
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=3e-21 Score=198.56 Aligned_cols=252 Identities=13% Similarity=0.175 Sum_probs=186.1
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec--------cCCCCCccceeeeccccCceEEEEeCCCC
Q 011970 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR--------RGKPDSGFALFESESLKWPGFVEFDDVNG 198 (474)
Q Consensus 127 ~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~--------~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG 198 (474)
.|++-|..+-|-|++..||.+ ++.. ..+.|||.. .|++.....|..++.-++ .++|++..-
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt---~t~~------~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~--glsWn~~~~ 190 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVAT---KTSS------GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGY--GLSWNRQQE 190 (422)
T ss_pred cCCccchhhhhCCCCCcEEEe---cCCC------CCEEEEEeccCCCcccccccCCCceEEEeeccccc--ccccccccc
Confidence 478889999999999988753 3333 678889872 233333335666632232 466664444
Q ss_pred eEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEE
Q 011970 199 KVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDF 278 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F 278 (474)
=.|++++.|++|.+||++.+..- +..+ .....|.+|...|..|+|
T Consensus 191 g~Lls~~~d~~i~lwdi~~~~~~---------------------------~~~~--------~p~~~~~~h~~~VeDV~~ 235 (422)
T KOG0264|consen 191 GTLLSGSDDHTICLWDINAESKE---------------------------DKVV--------DPKTIFSGHEDVVEDVAW 235 (422)
T ss_pred eeEeeccCCCcEEEEeccccccC---------------------------Cccc--------cceEEeecCCcceehhhc
Confidence 47888899999999997643210 0000 233567789999999999
Q ss_pred EecCCCeEEEEeCCCcEEEEECC--CCceEEeccccCCceEEEEEcC-CCcEEEEEc-CCcEEEEeCC--CcEEEEeccC
Q 011970 279 IEQFNEKLLVKQENENLQILDVR--NAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR--GELVTSFEDH 352 (474)
Q Consensus 279 ~~~~~~~ll~~~~D~tIkIWDv~--tg~~~~~l~~h~~~v~sv~Fsp-dg~llaS~s-D~tIklWd~~--G~ll~tl~gH 352 (474)
.+.+...+.+.++|+.+.|||++ +.++...-.+|...+.+++|+| ++.+|||+| |+||+|||++ -+++.+|++|
T Consensus 236 h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H 315 (422)
T KOG0264|consen 236 HPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH 315 (422)
T ss_pred cccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC
Confidence 96555555556899999999999 5666777889999999999996 677889999 9999999995 7799999999
Q ss_pred CCCcCCCCeeEEEECCCCCE-EEEEecCCCccccccCCCCeEEEEeCCC-CeE-------------EEEecCCCCCCCCc
Q 011970 353 LLWHPDCNTNNIYITSDQDL-IISYCKAEPEDQWMEGSAGSINVSSILT-GKC-------------LAKINATNCSPKVD 417 (474)
Q Consensus 353 ~~~~~~~~v~svafSpDg~~-LaS~s~~~~~~~~~~s~DgtIklWdi~t-G~c-------------l~tl~gH~~~~~~~ 417 (474)
..- |..|.|||+-.. |||++ .|+.+.+||+.. |+- +-+=-||..
T Consensus 316 ~de-----v~~V~WSPh~etvLASSg-----------~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~----- 374 (422)
T KOG0264|consen 316 EDE-----VFQVEWSPHNETVLASSG-----------TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA----- 374 (422)
T ss_pred Ccc-----eEEEEeCCCCCceeEecc-----------cCCcEEEEeccccccccChhhhccCCcceeEEecCccc-----
Confidence 986 789999998655 55543 499999999843 111 122234443
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE-EEEEcCCCcEEEccC
Q 011970 418 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE-IYTGNRHGLVHVWSN 474 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~-LaSgs~DgtVklWd~ 474 (474)
.|....|+|+... |+|.++|+.++||++
T Consensus 375 -----------------------------kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 375 -----------------------------KVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred -----------------------------ccccccCCCCCCeEEEEecCCceEEEeec
Confidence 7888999998865 889999999999974
No 114
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=8.2e-22 Score=204.76 Aligned_cols=282 Identities=13% Similarity=0.106 Sum_probs=225.9
Q ss_pred eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeee---ccccCceEEEEeCC
Q 011970 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES---ESLKWPGFVEFDDV 196 (474)
Q Consensus 120 ~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~---~~~~~~~~V~Fs~~ 196 (474)
.+.+|+ |.|+|-.+++|...+.+-|++ . +.|+||||..-. ++ ++.-+. ..-.+++++... |
T Consensus 412 q~~tL~--HGEvVcAvtIS~~trhVyTgG----k-------gcVKVWdis~pg-~k-~PvsqLdcl~rdnyiRSckL~-p 475 (705)
T KOG0639|consen 412 QINTLA--HGEVVCAVTISNPTRHVYTGG----K-------GCVKVWDISQPG-NK-SPVSQLDCLNRDNYIRSCKLL-P 475 (705)
T ss_pred hhhhhc--cCcEEEEEEecCCcceeEecC----C-------CeEEEeeccCCC-CC-CccccccccCcccceeeeEec-C
Confidence 466776 789999999999999888743 3 689999983221 11 121111 123567788887 7
Q ss_pred CCeEEEEecCCCcEEEeecCCCeEEE--EEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcc
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYTMLY--SIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHR 272 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~~l~--tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~ 272 (474)
||+.|..|+.-.|+-||||...++.. .+. .-..+++++||+..++-+ +-.|+.|.|||+++..+.+.|.||.+.
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFs--ccsdGnI~vwDLhnq~~VrqfqGhtDG 553 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFS--CCSDGNIAVWDLHNQTLVRQFQGHTDG 553 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeee--eccCCcEEEEEcccceeeecccCCCCC
Confidence 99999999999999999998766432 222 346788999998877654 345899999999999999999999999
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecccc-CCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEec
Q 011970 273 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-FMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFE 350 (474)
Q Consensus 273 v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h-~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~ 350 (474)
+.+++.+ .+|.+|-+|+-|++||.||++++..++. +. ...|.++-..|.+..+|.|- ++.|.|-..+|.....|.
T Consensus 554 ascIdis-~dGtklWTGGlDntvRcWDlregrqlqq--hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlh 630 (705)
T KOG0639|consen 554 ASCIDIS-KDGTKLWTGGLDNTVRCWDLREGRQLQQ--HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLH 630 (705)
T ss_pred ceeEEec-CCCceeecCCCccceeehhhhhhhhhhh--hhhhhhheecccCCCccceeeecccCcEEEEecCCccceeec
Confidence 9999976 7899999999999999999999875533 21 24677777889999999998 999988888877766676
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccc
Q 011970 351 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 430 (474)
Q Consensus 351 gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~ 430 (474)
-|..- |.++-|.+-|++.+|.++ |+-++.|...-|.-+-..+..+
T Consensus 631 lheSc-----VLSlKFa~cGkwfvStGk-----------DnlLnawrtPyGasiFqskE~S------------------- 675 (705)
T KOG0639|consen 631 LHESC-----VLSLKFAYCGKWFVSTGK-----------DNLLNAWRTPYGASIFQSKESS------------------- 675 (705)
T ss_pred ccccE-----EEEEEecccCceeeecCc-----------hhhhhhccCccccceeeccccC-------------------
Confidence 66653 689999999999999887 9999999988887776665544
Q ss_pred ccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 431 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 431 ~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|.++..|-|.++|+|||.|+...|+.
T Consensus 676 ----------------sVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 676 ----------------SVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred ----------------cceeeeeccCceEEEecCCCcceEEEE
Confidence 799999999999999999998777664
No 115
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=3.4e-23 Score=222.02 Aligned_cols=220 Identities=12% Similarity=0.216 Sum_probs=180.7
Q ss_pred CeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEE
Q 011970 198 GKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 277 (474)
Q Consensus 198 Gk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~ 277 (474)
+..++....+...|+||.+.- ..|...|..+++-..+..+.. ++.|..+-||.+..-.++..|.+|...|.+|.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~~----~~hsaav~~lk~~~s~r~~~~--Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~ 77 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTREF----VAHSAAVGCLKIRKSSRSLVT--GGEDEKVNLWAIGKPNAITSLTGHESPIESLT 77 (825)
T ss_pred ccccceeeeeeccccccchhh----hhhhhhhceeeeeccceeecc--CCCceeeccccccCCchhheeeccCCcceeee
Confidence 344555556667888986432 123334444444322222322 25577888999977777889999999999999
Q ss_pred EEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCC
Q 011970 278 FIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLW 355 (474)
Q Consensus 278 F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~ 355 (474)
|.. +...|++|+.||+||+||++.++.+++|.||...+.+|.|+|-+.++|+++ |.-+++||.+ -.|..++.+|...
T Consensus 78 f~~-~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 78 FDT-SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred cCc-chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcce
Confidence 974 234444467999999999999999999999999999999999999999999 9999999997 7799999998754
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccc
Q 011970 356 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 435 (474)
Q Consensus 356 ~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (474)
|+.+.|+|||++++++.. |++|+|||...|+.+.+|++|..
T Consensus 157 -----v~~l~lsP~Gr~v~~g~e-----------d~tvki~d~~agk~~~ef~~~e~----------------------- 197 (825)
T KOG0267|consen 157 -----VDVLRLSPDGRWVASGGE-----------DNTVKIWDLTAGKLSKEFKSHEG----------------------- 197 (825)
T ss_pred -----eEEEeecCCCceeeccCC-----------cceeeeecccccccccccccccc-----------------------
Confidence 789999999999999865 99999999999999999999996
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 436 YIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 436 ~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|.+|.|+|---.|++||.|+||++||.
T Consensus 198 -----------~v~sle~hp~e~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 198 -----------KVQSLEFHPLEVLLAPGSSDRTVRFWDL 225 (825)
T ss_pred -----------cccccccCchhhhhccCCCCceeeeecc
Confidence 7889999999999999999999999984
No 116
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=1.9e-21 Score=193.09 Aligned_cols=277 Identities=12% Similarity=0.154 Sum_probs=223.2
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeecc---------------c--c-ceeeEeecCCCceEEEEEEeeCCCEEEE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRE---------------T--N-RRICFLNVSPDEVIRSLFYNKNNDSLIT 146 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~---------------t--g-~~l~~l~g~~~~~i~sv~fspdg~~Lis 146 (474)
|.++++.-+|+ |..+|+||-|-.|||.|++ + + -.|+||-- |.+.|..|.|.|-.+.|||
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD-H~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD-HVDEVNDLDFHPRETILIS 189 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh-ccCcccceeecchhheEEe
Confidence 88899999999 9999999999999999987 1 1 35889986 7788999999999999999
Q ss_pred EEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-
Q 011970 147 VSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS- 225 (474)
Q Consensus 147 ~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~- 225 (474)
+| .| .++++.|+..--.-.+++.|+. ...+.+++|. |.|.+|+-|.+--+++|+|++|++|..+-.
T Consensus 190 ~s----rD------~tvKlFDfsK~saKrA~K~~qd--~~~vrsiSfH-PsGefllvgTdHp~~rlYdv~T~QcfvsanP 256 (430)
T KOG0640|consen 190 GS----RD------NTVKLFDFSKTSAKRAFKVFQD--TEPVRSISFH-PSGEFLLVGTDHPTLRLYDVNTYQCFVSANP 256 (430)
T ss_pred cc----CC------CeEEEEecccHHHHHHHHHhhc--cceeeeEeec-CCCceEEEecCCCceeEEeccceeEeeecCc
Confidence 65 55 6999999854444455667775 3345699998 799999999999999999999999976542
Q ss_pred ----CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEe--ecCcceeEEEEEecCCCeEEEEeCCCcEEEE
Q 011970 226 ----DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQIL 298 (474)
Q Consensus 226 ----~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~--~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIW 298 (474)
.+.|..|.+|+ |.+.+++ |-|+-|||||=-.++|+.+|. |....|-+..|. -++.++|+++.|.++|||
T Consensus 257 d~qht~ai~~V~Ys~t~~lYvTa---SkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft-kn~kyiLsSG~DS~vkLW 332 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTGSLYVTA---SKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT-KNGKYILSSGKDSTVKLW 332 (430)
T ss_pred ccccccceeEEEecCCccEEEEe---ccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEc-cCCeEEeecCCcceeeee
Confidence 35799999997 6666665 558999999999999999997 334577888886 567889999999999999
Q ss_pred ECCCCceEEecccc-----CCceEEEEEcCCCcEEEEEc--CCcEEEEeCC-CcEEEEec-cCCCCcCCCCeeEEEECCC
Q 011970 299 DVRNAELMEVSRTE-----FMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNIYITSD 369 (474)
Q Consensus 299 Dv~tg~~~~~l~~h-----~~~v~sv~Fspdg~llaS~s--D~tIklWd~~-G~ll~tl~-gH~~~~~~~~v~svafSpD 369 (474)
.+.+|.++++..|- +..-+..+|...-.+++.-. .+.+--||.+ +..++-+. ||.+. ++-|.-||.
T Consensus 333 Ei~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a-----~R~i~HSP~ 407 (430)
T KOG0640|consen 333 EISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGA-----VRWIVHSPV 407 (430)
T ss_pred eecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCC-----ceEEEeCCC
Confidence 99999999875432 22334456777777777654 5677789995 66554333 88876 688999999
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 370 QDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 370 g~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
+--++++|. |-.+|.|-
T Consensus 408 ~p~FmTcsd-----------D~raRFWy 424 (430)
T KOG0640|consen 408 EPAFMTCSD-----------DFRARFWY 424 (430)
T ss_pred CCceeeecc-----------cceeeeee
Confidence 999999887 99999995
No 117
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=2.8e-21 Score=206.85 Aligned_cols=266 Identities=14% Similarity=0.159 Sum_probs=200.3
Q ss_pred ccEEEEeeCCCeEEeeecccc---ceee----------------------------------EeecCCCceEEEEEEeeC
Q 011970 98 RDIVFALAHSGVCAAFSRETN---RRIC----------------------------------FLNVSPDEVIRSLFYNKN 140 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg---~~l~----------------------------------~l~g~~~~~i~sv~fspd 140 (474)
..-+.+.|.|+|||||+++-+ +.++ .+-+ ....||+|+.|||
T Consensus 392 ~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d-~r~G~R~~~vSp~ 470 (1080)
T KOG1408|consen 392 RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCD-SRFGFRALAVSPD 470 (1080)
T ss_pred ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcC-cccceEEEEECCC
Confidence 456889999999999998841 2100 0111 1235999999999
Q ss_pred CCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCC--CeEEEEecCCCcEEEeecC-C
Q 011970 141 NDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN--GKVLTYSAQDSIYKVFDLK-N 217 (474)
Q Consensus 141 g~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~n--Gk~LaS~s~D~tiKlWdl~-t 217 (474)
||.||++ | +|.+++|.++..=.. .+|-..|-.-|.+++||-|+ .|+|||+|.|+-|.|+|++ +
T Consensus 471 gqhLAsG-----D-----r~GnlrVy~Lq~l~~----~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 471 GQHLASG-----D-----RGGNLRVYDLQELEY----TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred cceeccc-----C-----ccCceEEEEehhhhh----hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 9999973 2 357889999865554 22333344446689998664 5899999999999999996 7
Q ss_pred CeEEEEEcC--CcEEEEEEc-CC-ceEEEEecCCCCccEEEEecC---CCeEEEEEeecC-----cceeEEEEEecCCCe
Q 011970 218 YTMLYSISD--KHVQEIKIS-PG-IMLLIFNRSSSHVPLKILSIE---DGTVLKVFYHLL-----HRNKKVDFIEQFNEK 285 (474)
Q Consensus 218 g~~l~tl~~--~~V~~vafS-pg-~~la~~s~~s~D~tIkLWdi~---tG~~L~tl~~h~-----~~v~~V~F~~~~~~~ 285 (474)
|.++.|+.+ ..|.+|+|- .| +.-.++ ++.|+.|..=.-+ +|.. |.-|. .....++. +|.-+.
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~Mis--cGADksimFr~~qk~~~g~~---f~r~t~t~~ktTlYDm~V-dp~~k~ 610 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMIS--CGADKSIMFRVNQKASSGRL---FPRHTQTLSKTTLYDMAV-DPTSKL 610 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEe--ccCchhhheehhccccCcee---ccccccccccceEEEeee-CCCcce
Confidence 889999975 479999999 33 233333 3557766432221 1322 22221 23456664 355677
Q ss_pred EEEEeCCCcEEEEECCCCceEEeccc---cCCceEEEEEcCCCcEEEEEc-CCcEEEEeC-CCcEEEEeccCCCCcCCCC
Q 011970 286 LLVKQENENLQILDVRNAELMEVSRT---EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCN 360 (474)
Q Consensus 286 ll~~~~D~tIkIWDv~tg~~~~~l~~---h~~~v~sv~Fspdg~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~~~~~~ 360 (474)
+++++.|.+|+|+|+++|+..++++| |.+.+-.+..-|-|.++||+. |+|+.+.|+ .|||+.++.||...
T Consensus 611 v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~----- 685 (1080)
T KOG1408|consen 611 VVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA----- 685 (1080)
T ss_pred EEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchh-----
Confidence 88889999999999999999988765 667888999999999999998 999999999 69999999999986
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 361 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
|..+.|++|-+.|+|.+. ||.|-+|.+..
T Consensus 686 VTG~kF~nDCkHlISvsg-----------DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 686 VTGVKFLNDCKHLISVSG-----------DGCIFVWKLPL 714 (1080)
T ss_pred eeeeeecccchhheeecC-----------CceEEEEECch
Confidence 789999999999999876 99999999854
No 118
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=5.9e-21 Score=189.82 Aligned_cols=234 Identities=12% Similarity=0.159 Sum_probs=185.3
Q ss_pred eeeec-cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCc---eEEEEecCCCCccE
Q 011970 179 LFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGI---MLLIFNRSSSHVPL 252 (474)
Q Consensus 179 lf~~~-~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~---~la~~s~~s~D~tI 252 (474)
+|... |...+.+||- +|.++||||.|.||+|+|+..-..+.++. .+.|.++.|.|.- .|+++ +.|+.|
T Consensus 36 lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~---sdDG~i 109 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSG---SDDGHI 109 (362)
T ss_pred cccccccccceeEEEe---cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeee---cCCCcE
Confidence 55543 5666667876 59999999999999999999877777664 5789999999643 66665 668999
Q ss_pred EEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEecc-ccCCceEEEEEcCCCcEEEE
Q 011970 253 KILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLT 330 (474)
Q Consensus 253 kLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~-~h~~~v~sv~Fspdg~llaS 330 (474)
-+|++..-+++++|+.|.+.|..++..| .++|+.+ +.|+.+++||+-+|+--.+++ .|. ...|.|+|.|..|+-
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHP--S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIHP--SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHFVV 185 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEecC--CCceEEEEcCCceeeeehhhcCccceeeccCCc--ceeeEEcCCCCEEEE
Confidence 9999999999999999999999999874 3566665 899999999999987443322 232 234889999999988
Q ss_pred EcCCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 331 FRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 331 ~sD~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
..-+.|-||.++ ..+...++...- +.++-|- ++.+|+.|.. |+.|++||-.++.|+..+.+
T Consensus 186 ~~~~~i~i~q~d~A~v~~~i~~~~r------~l~~~~l-~~~~L~vG~d-----------~~~i~~~D~ds~~~~~~~~A 247 (362)
T KOG0294|consen 186 SGRNKIDIYQLDNASVFREIENPKR------ILCATFL-DGSELLVGGD-----------NEWISLKDTDSDTPLTEFLA 247 (362)
T ss_pred EeccEEEEEecccHhHhhhhhcccc------ceeeeec-CCceEEEecC-----------CceEEEeccCCCccceeeec
Confidence 887789999995 666666654422 2234343 5666776654 89999999988999999999
Q ss_pred CCCCCCCccccCCCCCCccccccccccccccccccccCEEEEE--EcCCCCEEEEEcCCCcEEEccC
Q 011970 410 TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF--YDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 410 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sla--fSpDg~~LaSgs~DgtVklWd~ 474 (474)
|.+ +|-+++ -.|++.+|+|+|.||.|++||+
T Consensus 248 H~~----------------------------------RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 248 HEN----------------------------------RVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred chh----------------------------------heeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 996 677766 3789999999999999999985
No 119
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=1.4e-20 Score=186.05 Aligned_cols=328 Identities=17% Similarity=0.277 Sum_probs=229.3
Q ss_pred hhcccccccCCcccccchhhhhhcccccceeecccCCCCCcccccccccccccEEEEEee---ccEEEEeeCCCeEEeee
Q 011970 38 LQRREICSKRDRAFSISNAQERFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA---RDIVFALAHSGVCAAFS 114 (474)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s---~~~las~s~dgtiklW~ 114 (474)
|.-||-+..+.-.+.+...|+|.-.++|...-| |.++ |+..|.++.+. |++++||+-||.+.+||
T Consensus 5 l~aRetG~e~ns~~rR~~s~rRil~L~Ln~d~d----------~~r~--HgGsvNsL~id~tegrymlSGgadgsi~v~D 72 (397)
T KOG4283|consen 5 LKARETGQESNSFARRFKSQRRILSLQLNNDKD----------FVRP--HGGSVNSLQIDLTEGRYMLSGGADGSIAVFD 72 (397)
T ss_pred hhhhhhcCCCchHHHHHHhhhhhheeeccCCcc----------eecc--CCCccceeeeccccceEEeecCCCccEEEEE
Confidence 445677755544455566677777777765322 2444 78888888887 99999999999999999
Q ss_pred ccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEe
Q 011970 115 RETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFD 194 (474)
Q Consensus 115 ~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs 194 (474)
++ |...-+ ...|| |+..-+ |.... +..|.-.|.++-+-
T Consensus 73 l~--------n~t~~e----------~s~li--------------~k~~c~--v~~~h--------~~~Hky~iss~~Wy 110 (397)
T KOG4283|consen 73 LQ--------NATDYE----------ASGLI--------------AKHKCI--VAKQH--------ENGHKYAISSAIWY 110 (397)
T ss_pred ec--------cccchh----------hccce--------------eheeee--ccccC--------CccceeeeeeeEEe
Confidence 87 221101 00122 122211 11111 11111112233333
Q ss_pred CCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC---CceEEEEecCCCCccEEEEecCCCeEEEEEeecC
Q 011970 195 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP---GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL 270 (474)
Q Consensus 195 ~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSp---g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~ 270 (474)
|-|--..+|+|.|.|+||||.+|-+....+. .+.|.+-+.|| ...|++.+ -.|..|+|-|++.|.+-++|.||.
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~g--tr~~~VrLCDi~SGs~sH~LsGHr 188 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAG--TRDVQVRLCDIASGSFSHTLSGHR 188 (397)
T ss_pred eecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEe--cCCCcEEEEeccCCcceeeecccc
Confidence 4444489999999999999999988888887 56899999998 23444442 346789999999999999999999
Q ss_pred cceeEEEEEecCCCeEEE-EeCCCcEEEEECCCC-ceEEe--------------ccccCCceEEEEEcCCCcEEEEEc-C
Q 011970 271 HRNKKVDFIEQFNEKLLV-KQENENLQILDVRNA-ELMEV--------------SRTEFMTPSAFIFLYENQLFLTFR-N 333 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv~tg-~~~~~--------------l~~h~~~v~sv~Fspdg~llaS~s-D 333 (474)
+.|.+|.|+ |..+.+|+ ++.|++||+||++.. -|..+ ...|...|..++|+.||..+++.. |
T Consensus 189 ~~vlaV~Ws-p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd 267 (397)
T KOG4283|consen 189 DGVLAVEWS-PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD 267 (397)
T ss_pred CceEEEEec-cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc
Confidence 999999998 55777777 689999999999965 34333 345778899999999999999998 9
Q ss_pred CcEEEEeCC-CcE-EEEec--cCCCCcCCCCeeEEEE---CCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 334 RTVAVWNFR-GEL-VTSFE--DHLLWHPDCNTNNIYI---TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 334 ~tIklWd~~-G~l-l~tl~--gH~~~~~~~~v~svaf---SpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
..+++|+.. |+- +..+- -|... .+.+| +-+...++-- -.|+++-|.++.+|..++-
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~------~~~~~~~~~~~s~vfv~~-----------p~~~~lall~~~sgs~ir~ 330 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQT------TSFAVHIQSMDSDVFVLF-----------PNDGSLALLNLLEGSFVRR 330 (397)
T ss_pred cceEEeecccCccccccccccccccc------ccceEEEeecccceEEEE-----------ecCCeEEEEEccCceEEEe
Confidence 999999984 752 22111 01110 11222 2222222211 1378999999999999999
Q ss_pred ecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 407 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 407 l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
|.+|-. .|...+|-||=+++++|+.|+.|..|-
T Consensus 331 l~~h~k----------------------------------~i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 331 LSTHLK----------------------------------RINCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred eecccc----------------------------------eeeEEeecCchhhhhccccCCcccccc
Confidence 999953 899999999999999999999998884
No 120
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=6.8e-20 Score=181.73 Aligned_cols=273 Identities=16% Similarity=0.139 Sum_probs=207.2
Q ss_pred eecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEE
Q 011970 124 LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY 203 (474)
Q Consensus 124 l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS 203 (474)
|+..+.+.|-+|-|+|.++.|+.+|+|| +.+++++..-.+.. .|.++ ..+...+|- |-..+++
T Consensus 8 l~npP~d~IS~v~f~~~~~~LLvssWDg----------slrlYdv~~~~l~~---~~~~~--~plL~c~F~--d~~~~~~ 70 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSPSSSDLLVSSWDG----------SLRLYDVPANSLKL---KFKHG--APLLDCAFA--DESTIVT 70 (323)
T ss_pred cCCCChhceeeEEEcCcCCcEEEEeccC----------cEEEEeccchhhhh---heecC--Cceeeeecc--CCceEEE
Confidence 4445788999999999988888878765 77788876554422 35543 445578996 4567889
Q ss_pred ecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEec
Q 011970 204 SAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 281 (474)
Q Consensus 204 ~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~ 281 (474)
|+-|++||+.|+.+++...... ++.|++|-+++ .+.++++ |=|++||+||..+-.+.-++.. ...|.+++ -
T Consensus 71 G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsg---sWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~---v 143 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISG---SWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMD---V 143 (323)
T ss_pred eccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEc---ccCccEEEEecccccccccccc-CceEEEEe---c
Confidence 9999999999999998766664 67899999997 4455554 5589999999877445555542 23556666 4
Q ss_pred CCCeEEEEeCCCcEEEEECCCCceEEe--ccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcE----EEEeccCC
Q 011970 282 FNEKLLVKQENENLQILDVRNAELMEV--SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL----VTSFEDHL 353 (474)
Q Consensus 282 ~~~~ll~~~~D~tIkIWDv~tg~~~~~--l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~l----l~tl~gH~ 353 (474)
.+.+|++|..|..+.+||+++-..-.. -..-...+++|++.|++.=++.+| ||.|.+=.++ -++ .-.|+.|.
T Consensus 144 ~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr 223 (323)
T KOG1036|consen 144 SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHR 223 (323)
T ss_pred cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeee
Confidence 478999999999999999998654321 122346789999999999899999 9999887775 422 34677775
Q ss_pred CCcCCC----CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccc
Q 011970 354 LWHPDC----NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 429 (474)
Q Consensus 354 ~~~~~~----~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~ 429 (474)
....+. .||+|+|+|=-+++|||+. ||-|.+||+.+-|-+..|..-..
T Consensus 224 ~~~~~~~~~yPVNai~Fhp~~~tfaTgGs-----------DG~V~~Wd~~~rKrl~q~~~~~~----------------- 275 (323)
T KOG1036|consen 224 LSEKDTEIIYPVNAIAFHPIHGTFATGGS-----------DGIVNIWDLFNRKRLKQLAKYET----------------- 275 (323)
T ss_pred cccCCceEEEEeceeEeccccceEEecCC-----------CceEEEccCcchhhhhhccCCCC-----------------
Confidence 521111 3899999999999999754 99999999999998888866542
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEEcC
Q 011970 430 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 465 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~ 465 (474)
.|.+++|+.||..||.|+.
T Consensus 276 -----------------SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 276 -----------------SISSLSFSMDGSLLAIASS 294 (323)
T ss_pred -----------------ceEEEEeccCCCeEEEEec
Confidence 6999999999999999874
No 121
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.1e-20 Score=191.73 Aligned_cols=292 Identities=13% Similarity=0.171 Sum_probs=218.8
Q ss_pred eeeEeecCC--CceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCC
Q 011970 120 RICFLNVSP--DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVN 197 (474)
Q Consensus 120 ~l~~l~g~~--~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~n 197 (474)
+|+-+|..| ...|.||-|.|.-+.|++|+ .| ++++|+. ..||.+.-+.-...+ --.+...+|. |+
T Consensus 202 rlkDaNa~~ps~~~I~sv~FHp~~plllvaG----~d------~~lrifq-vDGk~N~~lqS~~l~-~fPi~~a~f~-p~ 268 (514)
T KOG2055|consen 202 RLKDANAAHPSHGGITSVQFHPTAPLLLVAG----LD------GTLRIFQ-VDGKVNPKLQSIHLE-KFPIQKAEFA-PN 268 (514)
T ss_pred eecccccCCcCcCCceEEEecCCCceEEEec----CC------CcEEEEE-ecCccChhheeeeec-cCccceeeec-CC
Confidence 344455433 25799999999999999865 56 7888887 456653311100011 1234568998 79
Q ss_pred Ce-EEEEecCCCcEEEeecCCCeEEE-----EEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecC
Q 011970 198 GK-VLTYSAQDSIYKVFDLKNYTMLY-----SISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL 270 (474)
Q Consensus 198 Gk-~LaS~s~D~tiKlWdl~tg~~l~-----tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~ 270 (474)
|+ .+.+++...-+..|||.+.+..+ ......+....+|| +..||+. +..+-|.|....|++.+.+|+- .
T Consensus 269 G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~---G~~G~I~lLhakT~eli~s~Ki-e 344 (514)
T KOG2055|consen 269 GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIA---GNNGHIHLLHAKTKELITSFKI-E 344 (514)
T ss_pred CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEc---ccCceEEeehhhhhhhhheeee-c
Confidence 99 89999999999999999987433 22234577889997 6666665 4457899999999999999984 3
Q ss_pred cceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccC-CceEEEEEcCCCcEEEEEc-CCcEEEEeCC------
Q 011970 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNFR------ 342 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~-~~v~sv~Fspdg~llaS~s-D~tIklWd~~------ 342 (474)
+.+..+.|+ .++..|++.+.+|.|-+||+++..|++.+.... -.-.+++.|++|++||+|| -|.|-|+|.+
T Consensus 345 G~v~~~~fs-Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~ 423 (514)
T KOG2055|consen 345 GVVSDFTFS-SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST 423 (514)
T ss_pred cEEeeEEEe-cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccC
Confidence 678999998 567888889999999999999999998865432 2345788899999999999 8999999942
Q ss_pred -CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccC
Q 011970 343 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELG 421 (474)
Q Consensus 343 -G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~ 421 (474)
-+.+.++..-... |.++.|+||+|+||.+|. ..+..+||=.+.+-.. + +++|
T Consensus 424 ~PkPik~~dNLtt~-----Itsl~Fn~d~qiLAiaS~---------~~knalrLVHvPS~TV---F---sNfP------- 476 (514)
T KOG2055|consen 424 NPKPIKTVDNLTTA-----ITSLQFNHDAQILAIASR---------VKKNALRLVHVPSCTV---F---SNFP------- 476 (514)
T ss_pred CCCchhhhhhhhee-----eeeeeeCcchhhhhhhhh---------ccccceEEEeccceee---e---ccCC-------
Confidence 2356666554443 789999999999999885 4578999988765322 2 2222
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 422 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.-+..+..|++|+|||.|-+||-|+.+|.|+||..
T Consensus 477 ------------------~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 477 ------------------TSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred ------------------CCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 11233349999999999999999999999999963
No 122
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=6.8e-20 Score=181.49 Aligned_cols=274 Identities=14% Similarity=0.096 Sum_probs=208.7
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEecc-CCCCCccceeeeccccCceEEEEeCCCCeEE
Q 011970 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNGKVL 201 (474)
Q Consensus 123 ~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~-G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~L 201 (474)
.+...+++.|-+|+|||.-+.|+.|+ |-| .++|+|+++. |.+.. ....+ +-+.|..|+|+ .||..+
T Consensus 21 ev~~pP~DsIS~l~FSP~~~~~~~A~---SWD------~tVR~wevq~~g~~~~-ka~~~--~~~PvL~v~Ws-ddgskV 87 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQADNLLAAG---SWD------GTVRIWEVQNSGQLVP-KAQQS--HDGPVLDVCWS-DDGSKV 87 (347)
T ss_pred ecCCCcccchheeEeccccCceEEec---ccC------CceEEEEEecCCcccc-hhhhc--cCCCeEEEEEc-cCCceE
Confidence 45556889999999999655555433 455 6999999966 66533 12222 35667789998 699999
Q ss_pred EEecCCCcEEEeecCCCeEEEE-EcCCcEEEEEEcCCc---eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEE
Q 011970 202 TYSAQDSIYKVFDLKNYTMLYS-ISDKHVQEIKISPGI---MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVD 277 (474)
Q Consensus 202 aS~s~D~tiKlWdl~tg~~l~t-l~~~~V~~vafSpg~---~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~ 277 (474)
.+|+-|+++|+|||++++.... .|+..|..+.|=++. .|+++ |=|+|||.||.+.-+.+.++. .-.++...+
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG---SWDKTlKfWD~R~~~pv~t~~-LPeRvYa~D 163 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTG---SWDKTLKFWDTRSSNPVATLQ-LPERVYAAD 163 (347)
T ss_pred EeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEec---ccccceeecccCCCCeeeeee-ccceeeehh
Confidence 9999999999999999986553 467899999998533 45655 558999999999999998887 336777777
Q ss_pred EEecCCCeEEEEeCCCcEEEEECCCCceEE--eccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcE--EEEecc
Q 011970 278 FIEQFNEKLLVKQENENLQILDVRNAELME--VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL--VTSFED 351 (474)
Q Consensus 278 F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~--~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~l--l~tl~g 351 (474)
.. ...++++-.|..|.+++++++.-.. .-..-.-.+++|+.-+|++.+|-|+ .|.+.|-.++ +.. --+|+-
T Consensus 164 v~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkC 240 (347)
T KOG0647|consen 164 VL---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKC 240 (347)
T ss_pred cc---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEE
Confidence 53 3566778899999999999875321 1111223678899888888899999 9999999995 633 347777
Q ss_pred CCC------CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCC
Q 011970 352 HLL------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSST 425 (474)
Q Consensus 352 H~~------~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~ 425 (474)
|.. -++ .||+|+|.|.-..|++++. ||++..||-....-|.+.+.|.-
T Consensus 241 HR~~~~~~~~VY--aVNsi~FhP~hgtlvTaGs-----------DGtf~FWDkdar~kLk~s~~~~q------------- 294 (347)
T KOG0647|consen 241 HRSTNSVNDDVY--AVNSIAFHPVHGTLVTAGS-----------DGTFSFWDKDARTKLKTSETHPQ------------- 294 (347)
T ss_pred eccCCCCCCceE--EecceEeecccceEEEecC-----------CceEEEecchhhhhhhccCcCCC-------------
Confidence 763 133 3899999999999999754 99999999766666666666663
Q ss_pred CccccccccccccccccccccCEEEEEEcCCCCEEEEE
Q 011970 426 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG 463 (474)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSg 463 (474)
.|+...|+.+|+++|=+
T Consensus 295 ---------------------pItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 295 ---------------------PITCCSFNRNGSIFAYA 311 (347)
T ss_pred ---------------------ccceeEecCCCCEEEEE
Confidence 89999999999998744
No 123
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=6e-19 Score=188.62 Aligned_cols=223 Identities=10% Similarity=0.044 Sum_probs=171.4
Q ss_pred ccccccccccccEEEEEee-ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccc
Q 011970 79 PFVLPFLMKRTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSS 157 (474)
Q Consensus 79 ~~~~~~~~~~~~V~~i~~s-~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~ 157 (474)
.++..+ ....|..++++ +..|+|.+-+|+|--||+.+++.+..+.- ..+.|||++.+|-++.|+.+ .+|
T Consensus 62 ~vi~g~--~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~-~gg~IWsiai~p~~~~l~Ig----cdd--- 131 (691)
T KOG2048|consen 62 PVIHGP--EDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDS-NGGAIWSIAINPENTILAIG----CDD--- 131 (691)
T ss_pred EEEecC--CCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecC-CCcceeEEEeCCccceEEee----cCC---
Confidence 444444 67889999999 99999999999999999999999999885 66899999999999988874 466
Q ss_pred eeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-------C-C--
Q 011970 158 LKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-------D-K-- 227 (474)
Q Consensus 158 Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-------~-~-- 227 (474)
.-+.+.++..++.... ..|.-+ ...+.+|+|+ |+|..||.|+.||-||+||++.|+.++... . +
T Consensus 132 ---Gvl~~~s~~p~~I~~~-r~l~rq-~sRvLslsw~-~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~ 205 (691)
T KOG2048|consen 132 ---GVLYDFSIGPDKITYK-RSLMRQ-KSRVLSLSWN-PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPT 205 (691)
T ss_pred ---ceEEEEecCCceEEEE-eecccc-cceEEEEEec-CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCce
Confidence 4444555555554211 122222 3457789998 799999999999999999999999877221 1 2
Q ss_pred cEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCce--
Q 011970 228 HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-- 305 (474)
Q Consensus 228 ~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~-- 305 (474)
-||+|.|=-+++|+++.+ -++|+.||-++|++++++..|...|.+++-. +.++++.+++.|+.|-.+-..++.-
T Consensus 206 iVWSv~~Lrd~tI~sgDS---~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~-~~~d~vfsaGvd~~ii~~~~~~~~~~w 281 (691)
T KOG2048|consen 206 IVWSVLFLRDSTIASGDS---AGTVTFWDSIFGTLIQSHSCHDADVLALAVA-DNEDRVFSAGVDPKIIQYSLTTNKSEW 281 (691)
T ss_pred EEEEEEEeecCcEEEecC---CceEEEEcccCcchhhhhhhhhcceeEEEEc-CCCCeEEEccCCCceEEEEecCCccce
Confidence 389999997888888754 4799999999999999999999999999965 5568899999998888777665432
Q ss_pred EEe--ccccCCceEEEEE
Q 011970 306 MEV--SRTEFMTPSAFIF 321 (474)
Q Consensus 306 ~~~--l~~h~~~v~sv~F 321 (474)
+.. ..+|...|.+++.
T Consensus 282 v~~~~r~~h~hdvrs~av 299 (691)
T KOG2048|consen 282 VINSRRDLHAHDVRSMAV 299 (691)
T ss_pred eeeccccCCcccceeeee
Confidence 221 2345555555554
No 124
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=2.8e-20 Score=196.59 Aligned_cols=312 Identities=13% Similarity=0.133 Sum_probs=233.4
Q ss_pred cccccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeee
Q 011970 84 FLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (474)
Q Consensus 84 ~~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~ 161 (474)
|--|...|++|... |+.||+|+.|||+|+|.+.||+|+++++. ++.|+||+|+|.++.=+.+-+.+ +
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~--d~~I~~vaw~P~~~~~vLAvA~~--~------- 464 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF--DSEIRSVAWNPLSDLCVLAVAVG--E------- 464 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee--cceeEEEEecCCCCceeEEEEec--C-------
Confidence 33488899988887 99999999999999999999999999986 57899999999998544433333 1
Q ss_pred EEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEe----cCCCcEEEeecC------CCeEEEEEcCCcEEE
Q 011970 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS----AQDSIYKVFDLK------NYTMLYSISDKHVQE 231 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~----s~D~tiKlWdl~------tg~~l~tl~~~~V~~ 231 (474)
.+-|=+-.-|.-.. +.+ .-..|+++ ..|.++-.|.-. -|-|+..-+...|..
T Consensus 465 ~~~ivnp~~G~~~e---------------~~~---t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~ 526 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLE---------------VGP---TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQ 526 (733)
T ss_pred ceEEeCccccchhh---------------hcc---hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccce
Confidence 12222212221100 000 01112221 234466677533 232555555789999
Q ss_pred EEEc-CCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc
Q 011970 232 IKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR 310 (474)
Q Consensus 232 vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~ 310 (474)
|.++ .|.+|++....+....|-|-++..+..+--|.--.+.+..|.|.|. --+|+++. -..|+|||+..+++++.+.
T Consensus 527 vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs-~p~lfVaT-q~~vRiYdL~kqelvKkL~ 604 (733)
T KOG0650|consen 527 VTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPS-KPYLFVAT-QRSVRIYDLSKQELVKKLL 604 (733)
T ss_pred eeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCC-CceEEEEe-ccceEEEehhHHHHHHHHh
Confidence 9999 6999999988877778888888777776667544467899999853 44555542 3579999999999998888
Q ss_pred ccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 011970 311 TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 387 (474)
Q Consensus 311 ~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~ 387 (474)
....++++++.+|.|.-|+.++ |+.+-..|++ .+..++|.-|... |++|+|++-=-++||||.
T Consensus 605 tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a-----vr~Va~H~ryPLfas~sd--------- 670 (733)
T KOG0650|consen 605 TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA-----VRSVAFHKRYPLFASGSD--------- 670 (733)
T ss_pred cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh-----hhhhhhccccceeeeecC---------
Confidence 8888999999999999999999 9999888985 5689999999886 689999999999999986
Q ss_pred CCCCeEEEEe------CCCCe---EEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC
Q 011970 388 GSAGSINVSS------ILTGK---CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN 458 (474)
Q Consensus 388 s~DgtIklWd------i~tG~---cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~ 458 (474)
||++-++. +...- .|+.|+||.. . .+ -.|-.+.|+|.-.
T Consensus 671 --Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~--~-------~~---------------------~gVLd~~wHP~qp 718 (733)
T KOG0650|consen 671 --DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK--T-------ND---------------------LGVLDTIWHPRQP 718 (733)
T ss_pred --CCcEEEEeeeeehhhhcCCceEeeeeccCcee--e-------cc---------------------cceEeecccCCCc
Confidence 99998884 22111 3578889874 0 00 1588899999999
Q ss_pred EEEEEcCCCcEEEc
Q 011970 459 EIYTGNRHGLVHVW 472 (474)
Q Consensus 459 ~LaSgs~DgtVklW 472 (474)
.|+|++.|||||||
T Consensus 719 WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 719 WLFSAGADGTIRLF 732 (733)
T ss_pred eEEecCCCceEEee
Confidence 99999999999999
No 125
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=3.3e-20 Score=183.73 Aligned_cols=240 Identities=15% Similarity=0.169 Sum_probs=176.5
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecCC-CeEEEEE---cCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEE
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSI---SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t-g~~l~tl---~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L 263 (474)
|..++|||...-.|+.+|.|++||+|++++ |...-.- ++..|.+++||.++..+.++ +.|+.+|+||+++||..
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g--~~Dk~~k~wDL~S~Q~~ 107 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSG--GCDKQAKLWDLASGQVS 107 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEee--ccCCceEEEEccCCCee
Confidence 447999964666788999999999999986 5543222 25789999999644444332 55899999999999665
Q ss_pred EEEeecCcceeEEEEEecCCC-eEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC
Q 011970 264 KVFYHLLHRNKKVDFIEQFNE-KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 341 (474)
Q Consensus 264 ~tl~~h~~~v~~V~F~~~~~~-~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~ 341 (474)
++.-|...|+.+.|.+.-+- .|++||+|+|||.||.++...+.++.= ...+++... ...+++.+. ++.|.++++
T Consensus 108 -~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv--~~pm~vVata~r~i~vynL 183 (347)
T KOG0647|consen 108 -QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV--LYPMAVVATAERHIAVYNL 183 (347)
T ss_pred -eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhc--cCceeEEEecCCcEEEEEc
Confidence 45568899999999975553 455579999999999999888766331 124555433 334566665 999999999
Q ss_pred C-Cc-EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC--eEEEEecCCCCCCCCc
Q 011970 342 R-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG--KCLAKINATNCSPKVD 417 (474)
Q Consensus 342 ~-G~-ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG--~cl~tl~gH~~~~~~~ 417 (474)
+ +. ..+..+-...|. +++|+.-+|++..|-||- .|.+-|-.|..+ +---+|+.|.. .+.
T Consensus 184 ~n~~te~k~~~SpLk~Q----~R~va~f~d~~~~alGsi-----------EGrv~iq~id~~~~~~nFtFkCHR~--~~~ 246 (347)
T KOG0647|consen 184 ENPPTEFKRIESPLKWQ----TRCVACFQDKDGFALGSI-----------EGRVAIQYIDDPNPKDNFTFKCHRS--TNS 246 (347)
T ss_pred CCCcchhhhhcCcccce----eeEEEEEecCCceEeeee-----------cceEEEEecCCCCccCceeEEEecc--CCC
Confidence 5 32 334444444554 789999999888888876 889999998887 55567888873 000
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 418 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
+..-.=.|.+|+|+|.-.+|||++.||+.-.||
T Consensus 247 -----------------------~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 247 -----------------------VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred -----------------------CCCceEEecceEeecccceEEEecCCceEEEec
Confidence 000001688999999999999999999999998
No 126
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=5.6e-20 Score=182.48 Aligned_cols=231 Identities=15% Similarity=0.204 Sum_probs=172.8
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecCC--Ce--EEEEE--cCCcEEEEEEc-C--CceEEEEecCCCCccEEEEecC
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKN--YT--MLYSI--SDKHVQEIKIS-P--GIMLLIFNRSSSHVPLKILSIE 258 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t--g~--~l~tl--~~~~V~~vafS-p--g~~la~~s~~s~D~tIkLWdi~ 258 (474)
+..|.|+ +-|+.+|+||.|+++||||.+. |+ |-... ++..|+.|.+- | |+.+|+. +.|+|++||.=.
T Consensus 16 ihdVs~D-~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~c---S~Drtv~iWEE~ 91 (361)
T KOG2445|consen 16 IHDVSFD-FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATC---SYDRTVSIWEEQ 91 (361)
T ss_pred eeeeeec-ccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEE---ecCCceeeeeec
Confidence 4489997 7999999999999999999754 33 33333 36789999998 6 8988886 679999999631
Q ss_pred ---------CCeEEEEEeecCcceeEEEEEecCCC-eEEEEeCCCcEEEEECCC-CceEE-----e-------ccccCCc
Q 011970 259 ---------DGTVLKVFYHLLHRNKKVDFIEQFNE-KLLVKQENENLQILDVRN-AELME-----V-------SRTEFMT 315 (474)
Q Consensus 259 ---------tG~~L~tl~~h~~~v~~V~F~~~~~~-~ll~~~~D~tIkIWDv~t-g~~~~-----~-------l~~h~~~ 315 (474)
.-....+|......|..|.|.|..-+ +|++.+.||++|||+.-. .++.+ . +..+...
T Consensus 92 ~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~ 171 (361)
T KOG2445|consen 92 EKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQP 171 (361)
T ss_pred ccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCc
Confidence 11234567766678899999865545 455568999999997654 22211 1 1224445
Q ss_pred eEEEEEcC---CCcEEEEEcCC------cEEEEeC-C-C-cE--EEEeccCCCCcCCCCeeEEEECCC----CCEEEEEe
Q 011970 316 PSAFIFLY---ENQLFLTFRNR------TVAVWNF-R-G-EL--VTSFEDHLLWHPDCNTNNIYITSD----QDLIISYC 377 (474)
Q Consensus 316 v~sv~Fsp---dg~llaS~sD~------tIklWd~-~-G-~l--l~tl~gH~~~~~~~~v~svafSpD----g~~LaS~s 377 (474)
...+.++| .-++||.|+|. .++||.. + | ++ +.+|.+|... |.+|+|.|+ -++||.+|
T Consensus 172 ~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp-----I~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 172 CFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP-----IRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred ceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc-----ceeeeeccccCCceeeEEEee
Confidence 56677765 46789999866 9999998 3 5 44 5589999987 689999996 48999999
Q ss_pred cCCCccccccCCCCeEEEEeCCCC--------------------eEEEEecCCCCCCCCccccCCCCCCccccccccccc
Q 011970 378 KAEPEDQWMEGSAGSINVSSILTG--------------------KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 437 (474)
Q Consensus 378 ~~~~~~~~~~s~DgtIklWdi~tG--------------------~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (474)
+ || |+||++..- +.+..+.+|++
T Consensus 247 k-----------Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~------------------------- 289 (361)
T KOG2445|consen 247 K-----------DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG------------------------- 289 (361)
T ss_pred c-----------Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-------------------------
Confidence 8 99 999998521 12223334443
Q ss_pred cccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 438 RSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 438 ~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.||.|.|+--|.+|+|.+.||+||||.
T Consensus 290 ---------~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 290 ---------EVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred ---------ceEEEEEeeeeeEEeecCCCceeeehh
Confidence 899999999999999999999999995
No 127
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.4e-19 Score=180.32 Aligned_cols=277 Identities=14% Similarity=0.144 Sum_probs=195.6
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccc--c---ceeeE-eecCCCceEEEEEEeeCCCEEEEEEeecCCCccce
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRET--N---RRICF-LNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSL 158 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~t--g---~~l~~-l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~L 158 (474)
|...|..+.|+ |..||+.+.|++|+||++.. + +||+. +.- +--..|+|+||-..++..-. ..+
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~---dhpT~V~FapDc~s~vv~~~--~g~---- 155 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY---DHPTRVVFAPDCKSVVVSVK--RGN---- 155 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC---CCceEEEECCCcceEEEEEc--cCC----
Confidence 67778888888 99999999999999999763 2 23331 221 12467899999998876442 233
Q ss_pred eeeEEEEeEe---ccCCCCCccce-----eeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCC--c
Q 011970 159 KCRSTKIEYI---RRGKPDSGFAL-----FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--H 228 (474)
Q Consensus 159 k~~~~~iw~i---~~G~~~~~~~l-----f~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~--~ 228 (474)
++.++-. ..|.....+.- |+.-|..-+-.+-.- .++++|+|+|.|-+|-|||++ |+.|.++..+ .
T Consensus 156 ---~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~ 230 (420)
T KOG2096|consen 156 ---KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS 230 (420)
T ss_pred ---EEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC-Cceeeeecccccc
Confidence 4444443 34443211110 111111222223343 589999999999999999998 9999998643 4
Q ss_pred EEEEEEcCCceEEEEecCCCCccEEEEec---CCCeE-----EEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEEC
Q 011970 229 VQEIKISPGIMLLIFNRSSSHVPLKILSI---EDGTV-----LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 300 (474)
Q Consensus 229 V~~vafSpg~~la~~s~~s~D~tIkLWdi---~tG~~-----L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv 300 (474)
-...|.||++++++.+ +.--.||+|.+ .+|+. ...|+||+..|...+|+ ++.+++++.|.||++||||.
T Consensus 231 n~~aavSP~GRFia~~--gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs-n~S~r~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 231 NYDAAVSPDGRFIAVS--GFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS-NSSTRAVTVSKDGKWRIWDT 307 (420)
T ss_pred ccceeeCCCCcEEEEe--cCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC-CCcceeEEEecCCcEEEeec
Confidence 5678999977666553 22345999975 34433 24677999999999998 56788999999999999986
Q ss_pred CC-------CceEEec----cccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC-CcEEEEecc-CCCCcCCCCeeEEEEC
Q 011970 301 RN-------AELMEVS----RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYIT 367 (474)
Q Consensus 301 ~t-------g~~~~~l----~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~ll~tl~g-H~~~~~~~~v~svafS 367 (474)
.- .+.+++. ..-...+-.+..+|+|+.||.+.-.+++++..+ |+-.-+|+. |..- +.+|+|+
T Consensus 308 dVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~-----Is~is~~ 382 (420)
T KOG2096|consen 308 DVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTT-----ISSISYS 382 (420)
T ss_pred cceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCc-----eeeEEec
Confidence 52 2233332 222345568899999999998888899999995 998888885 4432 6899999
Q ss_pred CCCCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 368 SDQDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 368 pDg~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
|||++||+++ |.-+++.-
T Consensus 383 ~~g~~~atcG------------dr~vrv~~ 400 (420)
T KOG2096|consen 383 SDGKYIATCG------------DRYVRVIR 400 (420)
T ss_pred CCCcEEeeec------------ceeeeeec
Confidence 9999999975 78888865
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=5.8e-20 Score=189.81 Aligned_cols=278 Identities=14% Similarity=0.093 Sum_probs=202.5
Q ss_pred EEEEeeCCCe-EEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccc
Q 011970 100 IVFALAHSGV-CAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA 178 (474)
Q Consensus 100 ~las~s~dgt-iklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~ 178 (474)
++.+.|.|.. |..||+.||..+-++.|+-...-.++.. -++++|+++. ++=..+.+|.+...+... +.
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~-l~~~yllsaq---------~~rp~l~vw~i~k~~~~~-q~ 77 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA-LNNEYLLSAQ---------LKRPLLHVWEILKKDQVV-QY 77 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeEEecCcccccchhhhh-hchhheeeec---------ccCccccccccCchhhhh-hh
Confidence 3455666666 9999999999888887751121122211 1225666643 222577788765443322 00
Q ss_pred eeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEecCCCCccEEEEe
Q 011970 179 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--HVQEIKISPGIMLLIFNRSSSHVPLKILS 256 (474)
Q Consensus 179 lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~--~V~~vafSpg~~la~~s~~s~D~tIkLWd 256 (474)
.-- -+.+-.++=+ |+|.+|+.|..-+.+.+|.+.+|.+|+.++.+ .|..++||.+++.+++ +|.|+-|.+|+
T Consensus 78 ~v~---Pg~v~al~s~-n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiT--gskDg~V~vW~ 151 (476)
T KOG0646|consen 78 IVL---PGPVHALASS-NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIIT--GSKDGAVLVWL 151 (476)
T ss_pred ccc---ccceeeeecC-CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEe--cCCCccEEEEE
Confidence 000 1123366665 79999998889999999999999999999764 6999999964444444 36689999998
Q ss_pred cCC---------CeEEEEEeecCcceeEEEEEe-cCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCc
Q 011970 257 IED---------GTVLKVFYHLLHRNKKVDFIE-QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 326 (474)
Q Consensus 257 i~t---------G~~L~tl~~h~~~v~~V~F~~-~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~ 326 (474)
+-+ -+.+..|.+|.-.|..+.... +-+.+++++|+|.|+|+||+..|.++.+.. -...+.+++..|-.+
T Consensus 152 l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~ 230 (476)
T KOG0646|consen 152 LTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAER 230 (476)
T ss_pred EEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEccccc
Confidence 632 356778888877786666432 235799999999999999999999886633 224788999999999
Q ss_pred EEEEEc-CCcEEEEeC-----------------CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccC
Q 011970 327 LFLTFR-NRTVAVWNF-----------------RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 327 llaS~s-D~tIklWd~-----------------~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s 388 (474)
.+-.|. +|.|-+-++ +++.++.|.||.+. ..|..++++-||.+|+||+.
T Consensus 231 ~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~---~~ITcLais~DgtlLlSGd~---------- 297 (476)
T KOG0646|consen 231 VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE---SAITCLAISTDGTLLLSGDE---------- 297 (476)
T ss_pred EEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC---cceeEEEEecCccEEEeeCC----------
Confidence 988888 998877664 23456788999983 13789999999999999987
Q ss_pred CCCeEEEEeCCCCeEEEEecC
Q 011970 389 SAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 389 ~DgtIklWdi~tG~cl~tl~g 409 (474)
||+|.|||+.+-||++++..
T Consensus 298 -dg~VcvWdi~S~Q~iRtl~~ 317 (476)
T KOG0646|consen 298 -DGKVCVWDIYSKQCIRTLQT 317 (476)
T ss_pred -CCCEEEEecchHHHHHHHhh
Confidence 99999999999999999863
No 129
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=2.2e-20 Score=201.74 Aligned_cols=222 Identities=12% Similarity=0.192 Sum_probs=178.4
Q ss_pred CCeEEEEecCCCcEEEeecCC---CeEEEEEc--CCcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCeEEEEEeec
Q 011970 197 NGKVLTYSAQDSIYKVFDLKN---YTMLYSIS--DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL 269 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~t---g~~l~tl~--~~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h 269 (474)
+.++||+++..|.|-+|||.- .++++.+. ...|..+.|++ -.+|+++ |.|++||+||++.-+-..+|.+.
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSG---SQDg~vK~~DlR~~~S~~t~~~n 175 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISG---SQDGTVKCWDLRSKKSKSTFRSN 175 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEec---CCCceEEEEeeeccccccccccc
Confidence 457999999999999999975 34555554 45799999996 3445543 77999999999998889999998
Q ss_pred CcceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEE
Q 011970 270 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELV 346 (474)
Q Consensus 270 ~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t-g~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll 346 (474)
...++.|.|+|-.+.+++++.+.|++|+||++. .+|...+..|.+.|..+.++|++.+||||+ |++|||||.+ ++..
T Consensus 176 SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~ 255 (839)
T KOG0269|consen 176 SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK 255 (839)
T ss_pred chhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc
Confidence 899999999987788888899999999999997 456777899999999999999999999999 9999999996 4432
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCE-EEEEecCCCccccccCCCCeEEEEeCCCCeE--EEEecCCCCCCCCccccCCC
Q 011970 347 TSFEDHLLWHPDCNTNNIYITSDQDL-IISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKINATNCSPKVDDELGSS 423 (474)
Q Consensus 347 ~tl~gH~~~~~~~~v~svafSpDg~~-LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c--l~tl~gH~~~~~~~~~~~~~ 423 (474)
....-|+.. .|..|.|=|+-++ ||+++. ..|-.|++|||. ... -+++..|++
T Consensus 256 ~~~tInTia----pv~rVkWRP~~~~hLAtcsm---------v~dtsV~VWDvr-RPYIP~~t~~eH~~----------- 310 (839)
T KOG0269|consen 256 PKHTINTIA----PVGRVKWRPARSYHLATCSM---------VVDTSVHVWDVR-RPYIPYATFLEHTD----------- 310 (839)
T ss_pred ceeEEeecc----eeeeeeeccCccchhhhhhc---------cccceEEEEeec-cccccceeeeccCc-----------
Confidence 222223332 2788999998654 555543 458999999984 333 478889986
Q ss_pred CCCccccccccccccccccccccCEEEEEEcC-CCCEEEEEcCCCcE
Q 011970 424 STGKSKKLNKSSYIRSTVGEALEDITSLFYDE-ERNEIYTGNRHGLV 469 (474)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~l~~V~slafSp-Dg~~LaSgs~DgtV 469 (474)
.|+.++|.. |...|-|+|.|++|
T Consensus 311 -----------------------~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 311 -----------------------SVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred -----------------------cccceeccCCCceeeEeecCccHH
Confidence 677788865 67779999999987
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.6e-19 Score=195.20 Aligned_cols=233 Identities=12% Similarity=0.149 Sum_probs=187.4
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCC-eEEEEE--cCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCe---EE
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT---VL 263 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg-~~l~tl--~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~---~L 263 (474)
.|.|+ |+|+.|.+++.|+-||+|+...- +.-.++ ++..|.+++---+ .++++ +.+++|.+..+..|+ .|
T Consensus 18 ~i~~d-~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-~f~~~---s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 18 LICYD-PDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-HFLTG---SEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred EEEEc-CCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-ceEEe---eccceEEEeeCCCCCcccee
Confidence 68997 79999999999999999986543 222222 3566777776544 66665 568999999988876 45
Q ss_pred EEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC
Q 011970 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 264 ~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~ 342 (474)
..|. -.++.++|+ -+|..+++||+|-.|||-++..+....++++|...|..+.|.|++++||+++ ||+|++||++
T Consensus 93 ~Rft---lp~r~~~v~-g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 93 ARFT---LPIRDLAVS-GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred eeee---ccceEEEEe-cCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 5555 567888987 5677888899999999999999999999999999999999999999999999 9999999995
Q ss_pred -CcEEEEeccCCC---CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCcc
Q 011970 343 -GELVTSFEDHLL---WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDD 418 (474)
Q Consensus 343 -G~ll~tl~gH~~---~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~ 418 (474)
|.+..+|.+=.. ......+..++|+|+|-.+|-.+- |++|++++..+++.+.+|.+...+
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~-----------d~~Vkvy~r~~we~~f~Lr~~~~s----- 232 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV-----------DNTVKVYSRKGWELQFKLRDKLSS----- 232 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc-----------CCeEEEEccCCceeheeecccccc-----
Confidence 999888875321 100112467899999655555554 999999999999999999875431
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 419 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
..+..+.|||.|++||++.-||.|-|||.
T Consensus 233 ---------------------------s~~~~~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 233 ---------------------------SKFSDLQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred ---------------------------cceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence 14888999999999999999999999983
No 131
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=7.2e-19 Score=175.05 Aligned_cols=234 Identities=13% Similarity=0.158 Sum_probs=190.4
Q ss_pred cccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCC--EEEEEEeecCCCccceeeeEE
Q 011970 86 MKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNND--SLITVSVYASDNFSSLKCRST 163 (474)
Q Consensus 86 ~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~--~Lis~S~~~s~d~s~Lk~~~~ 163 (474)
-|..++.+++.++-++||||.|-||+|||+.+.+.+..|-- |.+.|.++-|.|+-. -|++++ +| +.+
T Consensus 41 aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~-HagsitaL~F~~~~S~shLlS~s----dD------G~i 109 (362)
T KOG0294|consen 41 AHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLS-HAGSITALKFYPPLSKSHLLSGS----DD------GHI 109 (362)
T ss_pred ccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceec-cccceEEEEecCCcchhheeeec----CC------CcE
Confidence 38889999999999999999999999999999999999984 889999999998874 578855 66 788
Q ss_pred EEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC-CceEE
Q 011970 164 KIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP-GIMLL 241 (474)
Q Consensus 164 ~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSp-g~~la 241 (474)
-+|++..=++..+++ .|.+.|..++.. |.||+-.|-+.|+.+++|||-+|+--+.+. .+.-..|.|+| |..++
T Consensus 110 ~iw~~~~W~~~~slK----~H~~~Vt~lsiH-PS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLK----AHKGQVTDLSIH-PSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFV 184 (362)
T ss_pred EEEEcCCeEEeeeec----ccccccceeEec-CCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEE
Confidence 899864434333222 234447789997 799999999999999999999998655554 22333499998 66677
Q ss_pred EEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEE
Q 011970 242 IFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF 321 (474)
Q Consensus 242 ~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~F 321 (474)
...+ ..|-+|-+++-.+...++. ..++..+-|. ++++|++|++|++|++||-.++.++..+.+|...|-++.|
T Consensus 185 v~~~----~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~ 257 (362)
T KOG0294|consen 185 VSGR----NKIDIYQLDNASVFREIEN-PKRILCATFL--DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIAS 257 (362)
T ss_pred EEec----cEEEEEecccHhHhhhhhc-cccceeeeec--CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEE
Confidence 7654 4689999988777766653 2456667764 4789999999999999999999999999999999999985
Q ss_pred --cCCCcEEEEEc-CCcEEEEeCC
Q 011970 322 --LYENQLFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 322 --spdg~llaS~s-D~tIklWd~~ 342 (474)
.|++.+|+|+| ||.|++||++
T Consensus 258 ~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 258 YTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred EecCCceEEEEeccCceEEEEEcc
Confidence 38999999998 9999999996
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=8.1e-19 Score=181.40 Aligned_cols=257 Identities=12% Similarity=0.190 Sum_probs=190.0
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecC-CCcEEEeecCCCeEE--EEEcCCcEEEEEEcCC
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTML--YSISDKHVQEIKISPG 237 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~-D~tiKlWdl~tg~~l--~tl~~~~V~~vafSpg 237 (474)
+++.+||+++|...-. |.....--..+..- .++++|+++.. ..-+-+|.+..-... +..-.+.|.+++-+|.
T Consensus 18 ~~~~~~dl~TGt~~~~---ykg~~~a~~~sl~~--l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~ 92 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQ---YKGSYLAQAASLTA--LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNL 92 (476)
T ss_pred cceeEEecCCCceeEE---ecCcccccchhhhh--hchhheeeecccCccccccccCchhhhhhhcccccceeeeecCCC
Confidence 6688999999985211 11110000001211 35567776653 446889987543322 2333567999999996
Q ss_pred ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC---------CceEEe
Q 011970 238 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN---------AELMEV 308 (474)
Q Consensus 238 ~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t---------g~~~~~ 308 (474)
+.++.++ ...+.|.||.+.+|.+|..+..|-..+.++.|+ .++..++++|.|+-|.+|++-. -+.+..
T Consensus 93 G~~l~ag--~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 93 GYFLLAG--TISGNLYLWELSSGILLNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred ceEEEee--cccCcEEEEEeccccHHHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 6666653 234689999999999999999999999999998 6788888899999999997642 356788
Q ss_pred ccccCCceEEEEEcCC--CcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccc
Q 011970 309 SRTEFMTPSAFIFLYE--NQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQ 384 (474)
Q Consensus 309 l~~h~~~v~sv~Fspd--g~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~ 384 (474)
+.+|+..|+.+-..+. .-.+.|+| |+|||+||+. |.++.++.=... +.++++.|-+..+..|..
T Consensus 170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s------i~av~lDpae~~~yiGt~------ 237 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS------IKAVALDPAERVVYIGTE------ 237 (476)
T ss_pred eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCc------ceeEEEcccccEEEecCC------
Confidence 9999999999876654 45677888 9999999996 999988764332 689999999999888765
Q ss_pred cccCCCCeEEEEeCCC----------------CeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCE
Q 011970 385 WMEGSAGSINVSSILT----------------GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDI 448 (474)
Q Consensus 385 ~~~s~DgtIklWdi~t----------------G~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V 448 (474)
+|.|-+-++.+ +.-+..+.||.+ =..|
T Consensus 238 -----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~--------------------------------~~~I 280 (476)
T KOG0646|consen 238 -----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN--------------------------------ESAI 280 (476)
T ss_pred -----cceEEeeehhcCCcccccccccccccccceeeeeccccC--------------------------------Ccce
Confidence 88887766532 233455556653 0289
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 449 TSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 449 ~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
++|++|-||..|+||+.||+|.|||.
T Consensus 281 TcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 281 TCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred eEEEEecCccEEEeeCCCCCEEEEec
Confidence 99999999999999999999999985
No 133
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=1.2e-18 Score=172.38 Aligned_cols=204 Identities=15% Similarity=0.094 Sum_probs=157.5
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE-------EEEEc----------CCcEEEEEEcC--CceEEEEec
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-------LYSIS----------DKHVQEIKISP--GIMLLIFNR 245 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~-------l~tl~----------~~~V~~vafSp--g~~la~~s~ 245 (474)
-+.|.++..++..|+++.||+.||.|-||||++-.- .+... ...|.++.+=| .+|+.++
T Consensus 43 gGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss-- 120 (397)
T KOG4283|consen 43 GGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS-- 120 (397)
T ss_pred CCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc--
Confidence 345567888888999999999999999999986541 11111 12477777776 6777665
Q ss_pred CCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCC-CeEEE-EeCCCcEEEEECCCCceEEeccccCCceEEEEEcC
Q 011970 246 SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN-EKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY 323 (474)
Q Consensus 246 ~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~-~~ll~-~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fsp 323 (474)
|.|+|+|+||+.|-|...+|+-. +.|.+-+.+|-.- ..|++ +-.|-.|||-|+++|.+-.+|.||.+.|-+|.|+|
T Consensus 121 -SFDhtlKVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 121 -SFDHTLKVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred -cccceEEEeecccceeeEEeecC-ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 77999999999998888887632 3455545543322 34444 45899999999999999999999999999999999
Q ss_pred CCcE-EEEEc-CCcEEEEeCC--CcEEEEeccCCC---------CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC
Q 011970 324 ENQL-FLTFR-NRTVAVWNFR--GELVTSFEDHLL---------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 390 (474)
Q Consensus 324 dg~l-laS~s-D~tIklWd~~--G~ll~tl~gH~~---------~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~D 390 (474)
-... |+|++ |++||+||++ --|..+|..|.. ..-...|++++|+.||.++++... |
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt-----------d 267 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT-----------D 267 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC-----------c
Confidence 8876 55677 9999999995 468888887772 111125799999999999999765 9
Q ss_pred CeEEEEeCCCCeE
Q 011970 391 GSINVSSILTGKC 403 (474)
Q Consensus 391 gtIklWdi~tG~c 403 (474)
..+++|+...|+-
T Consensus 268 ~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 268 DRIRVWNMESGRN 280 (397)
T ss_pred cceEEeecccCcc
Confidence 9999999988864
No 134
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.8e-19 Score=172.20 Aligned_cols=231 Identities=11% Similarity=0.099 Sum_probs=177.2
Q ss_pred ccEEEEeeCCCeEEeeecccc---ceeeEeecCCCceEEEEEEee--CCCEEEEEEeecCCCccceeeeEEEEeEeccCC
Q 011970 98 RDIVFALAHSGVCAAFSRETN---RRICFLNVSPDEVIRSLFYNK--NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 172 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg---~~l~~l~g~~~~~i~sv~fsp--dg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~ 172 (474)
|..||+.|.|++||+|....+ +.|.+|.| |.++|+-|+|-- .|..|||+| +| +.+-||.-..|+
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G-h~GPVwqv~wahPk~G~iLAScs----YD------gkVIiWke~~g~ 91 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTG-HSGPVWKVAWAHPKFGTILASCS----YD------GKVIIWKEENGR 91 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCceeeeEecC-CCCCeeEEeecccccCcEeeEee----cC------ceEEEEecCCCc
Confidence 899999999999999997754 57999998 889999999954 799999987 55 688899977776
Q ss_pred CCCccceeee-ccccCceEEEEeCCC--CeEEEEecCCCcEEEeecCCC--eEEEEE---cCCcEEEEEEcCC-------
Q 011970 173 PDSGFALFES-ESLKWPGFVEFDDVN--GKVLTYSAQDSIYKVFDLKNY--TMLYSI---SDKHVQEIKISPG------- 237 (474)
Q Consensus 173 ~~~~~~lf~~-~~~~~~~~V~Fs~~n--Gk~LaS~s~D~tiKlWdl~tg--~~l~tl---~~~~V~~vafSpg------- 237 (474)
..+ +.++ .|-..+.+|+|- |+ |-+||++|.||+|.|.+.++- .....+ |.-.|.+|.+.|.
T Consensus 92 w~k---~~e~~~h~~SVNsV~wa-pheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 92 WTK---AYEHAAHSASVNSVAWA-PHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred hhh---hhhhhhhcccceeeccc-ccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 533 2332 245567789997 55 678999999999999987642 233333 3346889999874
Q ss_pred --------ceEEEEecCCCCccEEEEecCCCe--EEEEEeecCcceeEEEEEecCC---CeEEEEeCCCcEEEEECCC--
Q 011970 238 --------IMLLIFNRSSSHVPLKILSIEDGT--VLKVFYHLLHRNKKVDFIEQFN---EKLLVKQENENLQILDVRN-- 302 (474)
Q Consensus 238 --------~~la~~s~~s~D~tIkLWdi~tG~--~L~tl~~h~~~v~~V~F~~~~~---~~ll~~~~D~tIkIWDv~t-- 302 (474)
.+|+++ +.|..||||+..+++ .-++|++|.++|+.|++.|.-+ .+|+++++|+++-||-...
T Consensus 168 ~~~~~~~~krlvSg---GcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSG---GCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY 244 (299)
T ss_pred ccCcccccceeecc---CCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence 345554 679999999988774 3467999999999999975332 4778889999999997652
Q ss_pred CceEE-eccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC--CCcEE
Q 011970 303 AELME-VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF--RGELV 346 (474)
Q Consensus 303 g~~~~-~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~--~G~ll 346 (474)
++-.. +|..-...++.+.||+-|.+|+.+. |+.|++|-- +|+-.
T Consensus 245 e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~ 292 (299)
T KOG1332|consen 245 EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWE 292 (299)
T ss_pred CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEE
Confidence 22222 3344446799999999999999988 999999985 36643
No 135
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.82 E-value=2.2e-17 Score=166.66 Aligned_cols=272 Identities=13% Similarity=0.141 Sum_probs=178.8
Q ss_pred EEEeeCCCeEEeeeccc-cc--eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec-cCCCCCc
Q 011970 101 VFALAHSGVCAAFSRET-NR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-RGKPDSG 176 (474)
Q Consensus 101 las~s~dgtiklW~~~t-g~--~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~-~G~~~~~ 176 (474)
.++.++|+.|.+|++.+ |+ ++.++.. .+....++++|||+.|..++. .+ ..+.+|++. .|++..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~spd~~~lyv~~~---~~------~~i~~~~~~~~g~l~~- 72 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDV--PGQVQPMVISPDKRHLYVGVR---PE------FRVLSYRIADDGALTF- 72 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEec--CCCCccEEECCCCCEEEEEEC---CC------CcEEEEEECCCCceEE-
Confidence 45568899999999975 43 6666652 244678999999999876542 22 467778875 454310
Q ss_pred cceeeeccccCceEEEEeCCCCeEEEEec-CCCcEEEeecCC-Ce---EEEEEcC-CcEEEEEEcCC-ceEEEEecCCCC
Q 011970 177 FALFESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKN-YT---MLYSISD-KHVQEIKISPG-IMLLIFNRSSSH 249 (474)
Q Consensus 177 ~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s-~D~tiKlWdl~t-g~---~l~tl~~-~~V~~vafSpg-~~la~~s~~s~D 249 (474)
+-.......|..++|+ |||+.|.+++ .++.|.+||+++ |. .+..+.. .....++|+|+ ..+++.. ..+
T Consensus 73 --~~~~~~~~~p~~i~~~-~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~--~~~ 147 (330)
T PRK11028 73 --AAESPLPGSPTHISTD-HQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPC--LKE 147 (330)
T ss_pred --eeeecCCCCceEEEEC-CCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEee--CCC
Confidence 0111123356789998 7999877766 488999999963 43 3344433 35678999985 4555553 457
Q ss_pred ccEEEEecCC-CeEEE----EEe-ecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECC--CCce--EEeccc------c
Q 011970 250 VPLKILSIED-GTVLK----VFY-HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR--NAEL--MEVSRT------E 312 (474)
Q Consensus 250 ~tIkLWdi~t-G~~L~----tl~-~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~--tg~~--~~~l~~------h 312 (474)
..|.+||+.+ |++.. +.. ........++|+ |++.++.+.. .+++|.+||+. +++. ++.+.. +
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~-pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~ 226 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH-PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSD 226 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCCCCCCceEEEC-CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCC
Confidence 8999999987 43321 111 011234678887 6778887775 49999999997 3433 333221 1
Q ss_pred CCceEEEEEcCCCcEEEEEc--CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccC
Q 011970 313 FMTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS~s--D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s 388 (474)
..++..++|+|||+.|.++. +++|.+|+++ ++.+ ++.+|.... ...+.++|+|||++|+.++.
T Consensus 227 ~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~-~~~~~~~~~--~~p~~~~~~~dg~~l~va~~---------- 293 (330)
T PRK11028 227 TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL-SFEGHQPTE--TQPRGFNIDHSGKYLIAAGQ---------- 293 (330)
T ss_pred CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE-EEeEEEecc--ccCCceEECCCCCEEEEEEc----------
Confidence 22445688999999888874 8899999983 4322 333443210 01357999999999998764
Q ss_pred CCCeEEEEeC--CCCeE
Q 011970 389 SAGSINVSSI--LTGKC 403 (474)
Q Consensus 389 ~DgtIklWdi--~tG~c 403 (474)
.+++|.+|++ .+|..
T Consensus 294 ~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 294 KSHHISVYEIDGETGLL 310 (330)
T ss_pred cCCcEEEEEEcCCCCcE
Confidence 3899999987 45653
No 136
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=8.6e-18 Score=184.51 Aligned_cols=239 Identities=13% Similarity=0.115 Sum_probs=180.1
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccC-CCCCccceeeeccccCceEEEEeCCCCeEEEEec
Q 011970 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG-KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA 205 (474)
Q Consensus 127 ~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G-~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s 205 (474)
.|.+.-..|.|.|+|+.|.+++. + +.|++|....- +...++-. + ...+.+++ .++..|++|+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgs---d-------g~ir~~~~~sd~e~P~ti~~--~--g~~v~~ia---~~s~~f~~~s 73 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGS---D-------GDIRKWKTNSDEEEPETIDI--S--GELVSSIA---CYSNHFLTGS 73 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecC---C-------CceEEeecCCcccCCchhhc--c--CceeEEEe---ecccceEEee
Confidence 36677899999999999998763 3 47888875433 11111000 1 12222343 3556899999
Q ss_pred CCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecC
Q 011970 206 QDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF 282 (474)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~ 282 (474)
.|++|.+....+++.--.|. .-.+..++|+- |.++|.+ |+|-.|||-+..++...++|++|...|..|.|. |.
T Consensus 74 ~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaag---sdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~-p~ 149 (933)
T KOG1274|consen 74 EQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAG---SDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD-PK 149 (933)
T ss_pred ccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEee---cCceeEEEEeccccchheeecccCCceeeeeEc-CC
Confidence 99999999988877432222 34788999995 6666654 668999999999999999999999999999998 45
Q ss_pred CCeEEEEeCCCcEEEEECCCCceEEecccc--------CCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccC
Q 011970 283 NEKLLVKQENENLQILDVRNAELMEVSRTE--------FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDH 352 (474)
Q Consensus 283 ~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h--------~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH 352 (474)
++.|++.+-||+|+|||++++.+..++.+- ...+..++|+|+|-.||... |++|++++.. ++....|.+.
T Consensus 150 ~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~ 229 (933)
T KOG1274|consen 150 GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK 229 (933)
T ss_pred CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc
Confidence 677777889999999999999998776441 22445678999955555555 9999999995 8887777754
Q ss_pred CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 353 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 353 ~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
... ..+..+.|||+|+|||++.. ||.|-|||+.|
T Consensus 230 ~~s---s~~~~~~wsPnG~YiAAs~~-----------~g~I~vWnv~t 263 (933)
T KOG1274|consen 230 LSS---SKFSDLQWSPNGKYIAASTL-----------DGQILVWNVDT 263 (933)
T ss_pred ccc---cceEEEEEcCCCcEEeeecc-----------CCcEEEEeccc
Confidence 432 12678999999999999877 99999999986
No 137
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.81 E-value=4.9e-17 Score=169.61 Aligned_cols=320 Identities=13% Similarity=0.121 Sum_probs=234.0
Q ss_pred cccEEEEEee-ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEe
Q 011970 88 RTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 88 ~~~V~~i~~s-~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw 166 (474)
+.-|.++.|. +.-+++|..+|+|-+|+..+++..++.. .|+..|.++-.-.+|. |.| |..| |.+-+|
T Consensus 246 kk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gt-llS----GgKD------Rki~~W 313 (626)
T KOG2106|consen 246 KKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGT-LLS----GGKD------RKIILW 313 (626)
T ss_pred ceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCcc-Eee----cCcc------ceEEec
Confidence 3669999999 6668999999999999999999888888 7999999999999997 555 4466 777777
Q ss_pred Ee--------------------ccCC----------------CCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcE
Q 011970 167 YI--------------------RRGK----------------PDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 210 (474)
Q Consensus 167 ~i--------------------~~G~----------------~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~ti 210 (474)
|= ..|+ +..+|.+-..+|..-.+.++-. |+-..|+++++|+++
T Consensus 314 d~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~h-ps~~q~~T~gqdk~v 392 (626)
T KOG2106|consen 314 DDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATH-PSKNQLLTCGQDKHV 392 (626)
T ss_pred cccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcC-CChhheeeccCcceE
Confidence 52 1111 1111111111222223367776 566788899999999
Q ss_pred EEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEE
Q 011970 211 KVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK 289 (474)
Q Consensus 211 KlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~ 289 (474)
+||+ .-+++.+.. .+.+.+++|.|-+.+|++.. .+-.-+.|+++...+..-.. ...+..|.|+ |+|..|+++
T Consensus 393 ~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~---~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ys-p~G~~lAvg 465 (626)
T KOG2106|consen 393 RLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTA---TGRWFVLDTETQDLVTIHTD-NEQLSVVRYS-PDGAFLAVG 465 (626)
T ss_pred EEcc--CCceeEEEEecCceeEeeccCcceEEEeec---cceEEEEecccceeEEEEec-CCceEEEEEc-CCCCEEEEe
Confidence 9999 456777665 67899999999668887643 35677889999554443334 6788999997 789999999
Q ss_pred eCCCcEEEEECCC-CceE-EeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcE----------------EEEec
Q 011970 290 QENENLQILDVRN-AELM-EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGEL----------------VTSFE 350 (474)
Q Consensus 290 ~~D~tIkIWDv~t-g~~~-~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~l----------------l~tl~ 350 (474)
+.|+.|.|+-+.. |... +.-+.|...+..+.||+|+|+|.+-+ |--|-.|.. ++| +--|+
T Consensus 466 s~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~-~~~~~~ts~kDvkW~t~~c~lGF~ 544 (626)
T KOG2106|consen 466 SHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP-SECKQITSVKDVKWATYTCTLGFE 544 (626)
T ss_pred cCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcc-ccCcccceecceeeeeeEEEEEEE
Confidence 9999999998874 4443 33344557889999999999999999 999999953 332 11121
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe---EEEEecCCCCCCCCccccCCCCCCc
Q 011970 351 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK---CLAKINATNCSPKVDDELGSSSTGK 427 (474)
Q Consensus 351 gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~---cl~tl~gH~~~~~~~~~~~~~~~~~ 427 (474)
--.. ..+.+++.++-+.+.++||||.. -|+|+|+.-.--+ .-+++.||+.
T Consensus 545 v~g~-s~~t~i~a~~rs~~~~~lA~gdd-----------~g~v~lf~yPc~s~rA~~he~~ghs~--------------- 597 (626)
T KOG2106|consen 545 VFGG-SDGTDINAVARSHCEKLLASGDD-----------FGKVHLFSYPCSSPRAPSHEYGGHSS--------------- 597 (626)
T ss_pred Eecc-cCCchHHHhhhhhhhhhhhcccc-----------CceEEEEccccCCCcccceeeccccc---------------
Confidence 1111 11234677777888888888754 7999999753211 2346677775
Q ss_pred cccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 428 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
-|++|+|.-+-+.|.|.+.|..|..|+.
T Consensus 598 -------------------~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 598 -------------------HVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred -------------------eeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 7999999999999999889999999974
No 138
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.81 E-value=5.4e-17 Score=169.31 Aligned_cols=309 Identities=14% Similarity=0.143 Sum_probs=230.2
Q ss_pred cccEEEEEee----ccEEEEe--eCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeee
Q 011970 88 RTKVIEIVAA----RDIVFAL--AHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (474)
Q Consensus 88 ~~~V~~i~~s----~~~las~--s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~ 161 (474)
...|..|+|| |..|... +.+..+.+||.+.+..+....- .+|+|....|.|-+..||.. +| . .
T Consensus 154 ~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~-sne~v~~a~FHPtd~nliit--~G-k-------~ 222 (626)
T KOG2106|consen 154 DRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKT-SNEVVFLATFHPTDPNLIIT--CG-K-------G 222 (626)
T ss_pred cccceeeeecccCCCceEEEecCCCccccchhhchhhhccCccee-ccceEEEEEeccCCCcEEEE--eC-C-------c
Confidence 4458889999 5555443 4567889999998888777763 66899999999988766542 22 1 3
Q ss_pred EEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCce
Q 011970 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIM 239 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~ 239 (474)
.+.+|+.+.|-+.+.+-+|+...-+++.+|.|. +||+++ +|..+|+|-||+..+.+..+..+ +..|.++..--+++
T Consensus 223 H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~-engdvi-TgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt 300 (626)
T KOG2106|consen 223 HLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL-ENGDVI-TGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT 300 (626)
T ss_pred eEEEEEccCCceEEEeeccccccceEEEEEEEc-CCCCEE-eecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc
Confidence 567888888888777788887445888899998 799866 57789999999987777655554 56799988888889
Q ss_pred EEEEecCCCCccEEEEecCCCeEEEEEe--ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceE
Q 011970 240 LLIFNRSSSHVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS 317 (474)
Q Consensus 240 la~~s~~s~D~tIkLWdi~tG~~L~tl~--~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~ 317 (474)
|+++ +-|..|-+|| .+=+.++..+ ..-+.++.|+ |..++ |++|-.-++|--=.++++--+.+ .+|.+..|
T Consensus 301 llSG---gKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~--e~~~d-i~vGTtrN~iL~Gt~~~~f~~~v-~gh~delw 372 (626)
T KOG2106|consen 301 LLSG---GKDRKIILWD-DNYRKLRETELPEQFGPIRTVA--EGKGD-ILVGTTRNFILQGTLENGFTLTV-QGHGDELW 372 (626)
T ss_pred Eeec---CccceEEecc-ccccccccccCchhcCCeeEEe--cCCCc-EEEeeccceEEEeeecCCceEEE-Eeccccee
Confidence 9984 5689999999 3333343332 3346677777 33344 77776555665556666655544 67888999
Q ss_pred EEEEcCCCcEEEEEc-CCcEEEEeCCCcEEE--EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEE
Q 011970 318 AFIFLYENQLFLTFR-NRTVAVWNFRGELVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 394 (474)
Q Consensus 318 sv~Fspdg~llaS~s-D~tIklWd~~G~ll~--tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIk 394 (474)
.++..|+..+|+|++ |++++||| +-+++- .+++. +.++.|.|-| .||-|.. .|.--
T Consensus 373 gla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~--------~~~~~fhpsg-~va~Gt~-----------~G~w~ 431 (626)
T KOG2106|consen 373 GLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKIIEDP--------AECADFHPSG-VVAVGTA-----------TGRWF 431 (626)
T ss_pred eEEcCCChhheeeccCcceEEEcc-CCceeEEEEecCc--------eeEeeccCcc-eEEEeec-----------cceEE
Confidence 999999999999999 99999999 433332 23221 4689999999 8888876 77777
Q ss_pred EEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 395 VSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 395 lWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
+-|++|...+ ++.-.+ +.++.|.|||||.+||-||.|+.|.|+.
T Consensus 432 V~d~e~~~lv-~~~~d~----------------------------------~~ls~v~ysp~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 432 VLDTETQDLV-TIHTDN----------------------------------EQLSVVRYSPDGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred EEecccceeE-EEEecC----------------------------------CceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 8898875444 332222 2899999999999999999999999874
No 139
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=4.2e-17 Score=164.67 Aligned_cols=263 Identities=12% Similarity=0.153 Sum_probs=172.7
Q ss_pred eEEEEeEecc-CCCCCccceeeeccccCceEEEEeCCCCeEEEEe-cCCCcEEEeecC-CCeE--EEEEc-CCcEEEEEE
Q 011970 161 RSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS-AQDSIYKVFDLK-NYTM--LYSIS-DKHVQEIKI 234 (474)
Q Consensus 161 ~~~~iw~i~~-G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~-s~D~tiKlWdl~-tg~~--l~tl~-~~~V~~vaf 234 (474)
+++.+|++.+ |++.. ...++. ...+..++|+ |||++|..+ ..++.|.+|++. +|++ +.+.. ......|+|
T Consensus 12 ~~I~~~~~~~~g~l~~-~~~~~~--~~~~~~l~~s-pd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~ 87 (330)
T PRK11028 12 QQIHVWNLNHEGALTL-LQVVDV--PGQVQPMVIS-PDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHIST 87 (330)
T ss_pred CCEEEEEECCCCceee-eeEEec--CCCCccEEEC-CCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEE
Confidence 6788888853 54311 112222 2456679998 799988554 458899999996 5553 33333 345778999
Q ss_pred cCCc-eEEEEecCCCCccEEEEecC-CCe---EEEEEeecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCC-CceEE
Q 011970 235 SPGI-MLLIFNRSSSHVPLKILSIE-DGT---VLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-AELME 307 (474)
Q Consensus 235 Spg~-~la~~s~~s~D~tIkLWdi~-tG~---~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~t-g~~~~ 307 (474)
+|++ .+++++ -.++.|.+|+++ +|. .+..+.++ .....++|. |+++.++++. .+++|.+||+.+ +++..
T Consensus 88 ~~~g~~l~v~~--~~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~-p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 88 DHQGRFLFSAS--YNANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANID-PDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred CCCCCEEEEEE--cCCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeC-CCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 9854 555553 236789999996 443 34444432 234567776 6777887765 779999999987 43321
Q ss_pred e-----ccccCCceEEEEEcCCCcEEEEEc--CCcEEEEeCC---Cc--EEEEeccCCC--CcCCCCeeEEEECCCCCEE
Q 011970 308 V-----SRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR---GE--LVTSFEDHLL--WHPDCNTNNIYITSDQDLI 373 (474)
Q Consensus 308 ~-----l~~h~~~v~sv~Fspdg~llaS~s--D~tIklWd~~---G~--ll~tl~gH~~--~~~~~~v~svafSpDg~~L 373 (474)
. .......+..++|+|||++|.+.+ +++|.+|+++ |+ +++++..+.. ..+ .....+.|+|||++|
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~i~~~pdg~~l 242 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT-RWAADIHITPDGRHL 242 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC-ccceeEEECCCCCEE
Confidence 0 011224578899999999987775 8999999994 33 3555543211 000 012468999999999
Q ss_pred EEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEE
Q 011970 374 ISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY 453 (474)
Q Consensus 374 aS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slaf 453 (474)
..++. .+++|.+|++.+..-..++.+|.. -+ ...+.++|
T Consensus 243 yv~~~----------~~~~I~v~~i~~~~~~~~~~~~~~--~~-----------------------------~~p~~~~~ 281 (330)
T PRK11028 243 YACDR----------TASLISVFSVSEDGSVLSFEGHQP--TE-----------------------------TQPRGFNI 281 (330)
T ss_pred EEecC----------CCCeEEEEEEeCCCCeEEEeEEEe--cc-----------------------------ccCCceEE
Confidence 98754 378999999965433334445432 00 03346899
Q ss_pred cCCCCEEEEEcC-CCcEEEcc
Q 011970 454 DEERNEIYTGNR-HGLVHVWS 473 (474)
Q Consensus 454 SpDg~~LaSgs~-DgtVklWd 473 (474)
+|||++|+.++. +++|.+|+
T Consensus 282 ~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 282 DHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred CCCCCEEEEEEccCCcEEEEE
Confidence 999999998886 99999995
No 140
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.80 E-value=8.1e-18 Score=177.36 Aligned_cols=219 Identities=13% Similarity=0.102 Sum_probs=150.5
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC---CcEEEeecCCCeE--EEEEcCCcEEEEEEc
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTM--LYSISDKHVQEIKIS 235 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D---~tiKlWdl~tg~~--l~tl~~~~V~~vafS 235 (474)
..+.|||. +|.... .+..+ ...+.+++|| |||+.||+.+.+ .+|.+||+.+|+. +..+.+ ....++||
T Consensus 184 ~~i~i~d~-dg~~~~--~lt~~--~~~v~~p~wS-PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-~~~~~~wS 256 (429)
T PRK01742 184 YEVRVADY-DGFNQF--IVNRS--SQPLMSPAWS-PDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG-HNGAPAFS 256 (429)
T ss_pred EEEEEECC-CCCCce--EeccC--CCccccceEc-CCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-ccCceeEC
Confidence 68888985 444211 23332 2345589998 799999998754 4799999998864 333333 44579999
Q ss_pred CCc-eEEEEecCCCCcc--EEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCC-CceEEecc
Q 011970 236 PGI-MLLIFNRSSSHVP--LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-AELMEVSR 310 (474)
Q Consensus 236 pg~-~la~~s~~s~D~t--IkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~t-g~~~~~l~ 310 (474)
|++ +|+.... .++. |.+||+.+|++ ..+..+...+..++|+ |++.+|+..+ .++..+||++.. +...+.+
T Consensus 257 PDG~~La~~~~--~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wS-pDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l- 331 (429)
T PRK01742 257 PDGSRLAFASS--KDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWS-PDGQSILFTSDRSGSPQVYRMSASGGGASLV- 331 (429)
T ss_pred CCCCEEEEEEe--cCCcEEEEEEECCCCCe-EeeccCCCCcCCEEEC-CCCCEEEEEECCCCCceEEEEECCCCCeEEe-
Confidence 855 5665532 2444 55568777764 5566666667889998 6788888765 688999998753 2222333
Q ss_pred ccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccC
Q 011970 311 TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 311 ~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s 388 (474)
++.. ....|||||+.|+..+ ++.+ +||+. |++......+. ..++.|+|||++|+.++.
T Consensus 332 ~~~~--~~~~~SpDG~~ia~~~~~~i~-~~Dl~~g~~~~lt~~~~-------~~~~~~sPdG~~i~~~s~---------- 391 (429)
T PRK01742 332 GGRG--YSAQISADGKTLVMINGDNVV-KQDLTSGSTEVLSSTFL-------DESPSISPNGIMIIYSST---------- 391 (429)
T ss_pred cCCC--CCccCCCCCCEEEEEcCCCEE-EEECCCCCeEEecCCCC-------CCCceECCCCCEEEEEEc----------
Confidence 3333 4567999999998887 6655 59985 77654333321 246789999999999875
Q ss_pred CCCeEEEEeC--CCCeEEEEecCCCC
Q 011970 389 SAGSINVSSI--LTGKCLAKINATNC 412 (474)
Q Consensus 389 ~DgtIklWdi--~tG~cl~tl~gH~~ 412 (474)
++.+++|++ .+|+++++|.+|..
T Consensus 392 -~g~~~~l~~~~~~G~~~~~l~~~~g 416 (429)
T PRK01742 392 -QGLGKVLQLVSADGRFKARLPGSDG 416 (429)
T ss_pred -CCCceEEEEEECCCCceEEccCCCC
Confidence 787887775 47999999998875
No 141
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=2.3e-18 Score=183.17 Aligned_cols=297 Identities=13% Similarity=0.115 Sum_probs=196.4
Q ss_pred ccEEEEeeCCCeEEeeeccccc------eeeEeecCCCceEEEEEEeeCCCE-EEEEEeecCCCccceeeeEEEEeEecc
Q 011970 98 RDIVFALAHSGVCAAFSRETNR------RICFLNVSPDEVIRSLFYNKNNDS-LITVSVYASDNFSSLKCRSTKIEYIRR 170 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~------~l~~l~g~~~~~i~sv~fspdg~~-Lis~S~~~s~d~s~Lk~~~~~iw~i~~ 170 (474)
..+||.+-+||-|.|+|...-+ .++... .|.++|..+.+-| |+. |+++| .| +++++||++.
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~-aH~nAifDl~wap-ge~~lVsas----GD------sT~r~Wdvk~ 131 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPL-AHKNAIFDLKWAP-GESLLVSAS----GD------STIRPWDVKT 131 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccc-cccceeEeeccCC-CceeEEEcc----CC------ceeeeeeecc
Confidence 6899999999999999976422 245555 4889999999999 764 56654 55 7999999999
Q ss_pred CCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecC-CCeEEEEEcCCcE----EEEEEcCCceEEEEec
Q 011970 171 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSISDKHV----QEIKISPGIMLLIFNR 245 (474)
Q Consensus 171 G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~-tg~~l~tl~~~~V----~~vafSpg~~la~~s~ 245 (474)
+++......++| .+.+.+++|.+-|--++++|+.|+.|+|||+. ++.-....-+..+ ..-. -|..-+.
T Consensus 132 s~l~G~~~~~GH--~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p-tpskp~~---- 204 (720)
T KOG0321|consen 132 SRLVGGRLNLGH--TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP-TPSKPLK---- 204 (720)
T ss_pred ceeecceeeccc--ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC-CCCchhh----
Confidence 998776545554 45566899998778899999999999999974 2210000000000 0000 0111100
Q ss_pred CCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeC-CCcEEEEECCCCceEE------e--cccc---C
Q 011970 246 SSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE-NENLQILDVRNAELME------V--SRTE---F 313 (474)
Q Consensus 246 ~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~-D~tIkIWDv~tg~~~~------~--l~~h---~ 313 (474)
+-++=|-...+ ++. ..|..|.| +|+..|++++. |++||+||++...+.. . +..| +
T Consensus 205 ----kr~~k~kA~s~----ti~---ssvTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs 271 (720)
T KOG0321|consen 205 ----KRIRKWKAASN----TIF---SSVTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRS 271 (720)
T ss_pred ----ccccccccccC----cee---eeeEEEEE--eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccce
Confidence 11222222221 121 23555666 56778888775 9999999999866532 2 2223 2
Q ss_pred CceEEEEEcCC-CcEEEEEcCCcEEEEeCCC---cEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 011970 314 MTPSAFIFLYE-NQLFLTFRNRTVAVWNFRG---ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 389 (474)
Q Consensus 314 ~~v~sv~Fspd-g~llaS~sD~tIklWd~~G---~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~ 389 (474)
..+..++.-.- ..|+|+..|++|-.||+.+ ..+..+.||...- .-..-..|||+++|+||+.
T Consensus 272 ~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~s---f~vks~lSpd~~~l~SgSs----------- 337 (720)
T KOG0321|consen 272 VGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSS---FYVKSELSPDDCSLLSGSS----------- 337 (720)
T ss_pred eeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccce---eeeeeecCCCCceEeccCC-----------
Confidence 23344444333 3555555599999999953 2567777776421 1123347999999999876
Q ss_pred CCeEEEEeCCCCe-EEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE-EEEEcCCC
Q 011970 390 AGSINVSSILTGK-CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE-IYTGNRHG 467 (474)
Q Consensus 390 DgtIklWdi~tG~-cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~-LaSgs~Dg 467 (474)
|....||.+.+-+ -+..|.||+- .|++|.+.|---. +|++++|.
T Consensus 338 d~~ayiw~vs~~e~~~~~l~Ght~----------------------------------eVt~V~w~pS~~t~v~TcSdD~ 383 (720)
T KOG0321|consen 338 DEQAYIWVVSSPEAPPALLLGHTR----------------------------------EVTTVRWLPSATTPVATCSDDF 383 (720)
T ss_pred CcceeeeeecCccCChhhhhCcce----------------------------------EEEEEeeccccCCCceeeccCc
Confidence 9999999997644 4677888884 7999999764322 56669999
Q ss_pred cEEEccC
Q 011970 468 LVHVWSN 474 (474)
Q Consensus 468 tVklWd~ 474 (474)
++++|++
T Consensus 384 ~~kiW~l 390 (720)
T KOG0321|consen 384 RVKIWRL 390 (720)
T ss_pred ceEEEec
Confidence 9999974
No 142
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.1e-17 Score=166.34 Aligned_cols=258 Identities=13% Similarity=0.135 Sum_probs=183.7
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCC--CCCccceeeeccccCceEEEEeCCC-Ce
Q 011970 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK--PDSGFALFESESLKWPGFVEFDDVN-GK 199 (474)
Q Consensus 123 ~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~--~~~~~~lf~~~~~~~~~~V~Fs~~n-Gk 199 (474)
++.-.|.+.|.+|.|.+-|+.+||+| -| ++++|||...+. ..-+- -|. .|-+.+..|.+-+|. ||
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCS----sD------q~vkI~d~~~~s~~W~~Ts-~Wr-ah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCS----SD------QTVKIWDSTSDSGTWSCTS-SWR-AHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred ccccCCcceeeeeeecccCceeeecc----CC------CcEEEEeccCCCCceEEee-eEE-ecCCcEEEEEecCccccc
Confidence 55556889999999999999999987 34 689999974333 21111 111 133455577776554 99
Q ss_pred EEEEecCCCcEEEeecC--C----Ce---EEEEEcC--CcEEEEEEcC---CceEEEEecCCCCccEEEEecCCCe----
Q 011970 200 VLTYSAQDSIYKVFDLK--N----YT---MLYSISD--KHVQEIKISP---GIMLLIFNRSSSHVPLKILSIEDGT---- 261 (474)
Q Consensus 200 ~LaS~s~D~tiKlWdl~--t----g~---~l~tl~~--~~V~~vafSp---g~~la~~s~~s~D~tIkLWdi~tG~---- 261 (474)
++|++|.|+|++||.-. + |. ...+|.+ ..|.+|.|.| |-+||+. +.|+++||+...+--
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~---~aDG~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAA---SADGILRIYEAPDPMNLSQ 151 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEe---ccCcEEEEEecCCcccccc
Confidence 99999999999999741 1 11 3456654 5799999998 7788776 568999998655422
Q ss_pred --EEEEEe-------ecCcceeEEEEEec--CCCeEEEEeCC-----CcEEEEECC-CC-ceE--EeccccCCceEEEEE
Q 011970 262 --VLKVFY-------HLLHRNKKVDFIEQ--FNEKLLVKQEN-----ENLQILDVR-NA-ELM--EVSRTEFMTPSAFIF 321 (474)
Q Consensus 262 --~L~tl~-------~h~~~v~~V~F~~~--~~~~ll~~~~D-----~tIkIWDv~-tg-~~~--~~l~~h~~~v~sv~F 321 (474)
+...+. .+..+..+|.+++. ....|++|+.+ +.++||.-. ++ ++. ..|.+|...|++++|
T Consensus 152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~w 231 (361)
T KOG2445|consen 152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISW 231 (361)
T ss_pred chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeee
Confidence 222232 23345677887521 12355555533 489999744 34 444 358899999999999
Q ss_pred cCC----CcEEEEEc-CCcEEEEeCCC---------------------cEEEEeccCCCCcCCCCeeEEEECCCCCEEEE
Q 011970 322 LYE----NQLFLTFR-NRTVAVWNFRG---------------------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 375 (474)
Q Consensus 322 spd----g~llaS~s-D~tIklWd~~G---------------------~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS 375 (474)
.|. -++||+++ || |+||++.+ +.+..|.+|... ||.+.|.=-|..|+|
T Consensus 232 APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~-----VWrv~wNmtGtiLsS 305 (361)
T KOG2445|consen 232 APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE-----VWRVRWNMTGTILSS 305 (361)
T ss_pred ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc-----eEEEEEeeeeeEEee
Confidence 984 57899999 99 99999763 235678888865 899999999999999
Q ss_pred EecCCCccccccCCCCeEEEEeCC---CCeEEEEecCCCC
Q 011970 376 YCKAEPEDQWMEGSAGSINVSSIL---TGKCLAKINATNC 412 (474)
Q Consensus 376 ~s~~~~~~~~~~s~DgtIklWdi~---tG~cl~tl~gH~~ 412 (474)
.+. ||+||||... .-+|+..+++...
T Consensus 306 tGd-----------DG~VRLWkany~n~~kC~sv~~~e~~ 334 (361)
T KOG2445|consen 306 TGD-----------DGCVRLWKANYNNLWKCTSVLKAEGS 334 (361)
T ss_pred cCC-----------CceeeehhhhhhhhheeeeEEeccCC
Confidence 765 9999999642 3578888877653
No 143
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.5e-19 Score=195.43 Aligned_cols=192 Identities=12% Similarity=0.186 Sum_probs=159.7
Q ss_pred EEEEc--CCceEEEEecCCCCccEEEEecCC---CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCce
Q 011970 231 EIKIS--PGIMLLIFNRSSSHVPLKILSIED---GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL 305 (474)
Q Consensus 231 ~vafS--pg~~la~~s~~s~D~tIkLWdi~t---G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~ 305 (474)
+|+++ ..+.||+++. -+.|-+||+.- -+.|..|+.|...+.+++|++.....|++||.|++||+||++..+-
T Consensus 92 DVkW~~~~~NlIAT~s~---nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCST---NGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred hcccccchhhhheeecC---CCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 35555 3667787744 47899999976 5677889999999999999977778888899999999999999999
Q ss_pred EEeccccCCceEEEEEcC-CCcEEEEEc-CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCC
Q 011970 306 MEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP 381 (474)
Q Consensus 306 ~~~l~~h~~~v~sv~Fsp-dg~llaS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~ 381 (474)
..++.+....|+.|.|+| ++..|+++. .|.+++||++ ..|...|..|.+. |..+-++|++.+||+|+.
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~Gp-----V~c~nwhPnr~~lATGGR--- 240 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGP-----VLCLNWHPNREWLATGGR--- 240 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCc-----eEEEeecCCCceeeecCC---
Confidence 999999999999999996 678899988 8899999995 7789999999998 688999999999999865
Q ss_pred ccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE-E
Q 011970 382 EDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE-I 460 (474)
Q Consensus 382 ~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~-L 460 (474)
|++|||||..+++.-..+.-|+. ..|..|.|=|+.+. |
T Consensus 241 --------DK~vkiWd~t~~~~~~~~tInTi---------------------------------apv~rVkWRP~~~~hL 279 (839)
T KOG0269|consen 241 --------DKMVKIWDMTDSRAKPKHTINTI---------------------------------APVGRVKWRPARSYHL 279 (839)
T ss_pred --------CccEEEEeccCCCccceeEEeec---------------------------------ceeeeeeeccCccchh
Confidence 99999999865543222222331 17899999999976 7
Q ss_pred EEEc--CCCcEEEccC
Q 011970 461 YTGN--RHGLVHVWSN 474 (474)
Q Consensus 461 aSgs--~DgtVklWd~ 474 (474)
||.+ .|-.|+|||+
T Consensus 280 Atcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 280 ATCSMVVDTSVHVWDV 295 (839)
T ss_pred hhhhccccceEEEEee
Confidence 8777 5888999985
No 144
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.9e-17 Score=171.22 Aligned_cols=280 Identities=9% Similarity=0.096 Sum_probs=212.8
Q ss_pred cccEEEEEee--ccEEEEeeCCCeEEeeecc--ccceeeEeecCCCceEEEEEEeeCCC-EEEEEEeecCCCccceeeeE
Q 011970 88 RTKVIEIVAA--RDIVFALAHSGVCAAFSRE--TNRRICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRS 162 (474)
Q Consensus 88 ~~~V~~i~~s--~~~las~s~dgtiklW~~~--tg~~l~~l~g~~~~~i~sv~fspdg~-~Lis~S~~~s~d~s~Lk~~~ 162 (474)
-+.|.+|.|- .++|.++..||+++||.+. ++..|..++. -.-+|.+..|.|+|+ .+++++ -. +-
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-~~fPi~~a~f~p~G~~~i~~s~----rr------ky 281 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-EKFPIQKAEFAPNGHSVIFTSG----RR------KY 281 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee-ccCccceeeecCCCceEEEecc----cc------eE
Confidence 3458888887 8999999999999999865 4557777776 457899999999999 555533 44 67
Q ss_pred EEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEc-CCceE
Q 011970 163 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIML 240 (474)
Q Consensus 163 ~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafS-pg~~l 240 (474)
...||+.++|..+=-++.+.+ .......+.| +++++||..+..|-|-|=..+|++++.+++ .+.|.++.|| ++.+|
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e-~~~~e~FeVS-hd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVE-EKSMERFEVS-HDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKEL 359 (514)
T ss_pred EEEeeccccccccccCCCCcc-cchhheeEec-CCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEE
Confidence 889999999985533444443 2233456777 799999999999999999999999999998 4679999999 56666
Q ss_pred EEEecCCCCccEEEEecCCCeEEEEEeecCcce--eEEEEEecCCCeEEEEeCCCcEEEEECCC------CceEEecccc
Q 011970 241 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN--KKVDFIEQFNEKLLVKQENENLQILDVRN------AELMEVSRTE 312 (474)
Q Consensus 241 a~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v--~~V~F~~~~~~~ll~~~~D~tIkIWDv~t------g~~~~~l~~h 312 (474)
+++ ++++.|-+||+..-.|++.|... +.+ .+++-+ +.+.++++|+.-|-|.|||..+ .+.+.++..-
T Consensus 360 ~~~---~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S-~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL 434 (514)
T KOG2055|consen 360 LAS---GGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCIS-LNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL 434 (514)
T ss_pred EEE---cCCceEEEEecCCcceEEEEeec-Cccceeeeeec-CCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh
Confidence 665 45789999999999999999843 333 444433 6677888889999999999654 2344444444
Q ss_pred CCceEEEEEcCCCcEEEEEc---CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccC
Q 011970 313 FMTPSAFIFLYENQLFLTFR---NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS~s---D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s 388 (474)
.-.|+++.|+||+|+||-+| +..+||=.+ .-..-..|.-....+ ..|.+++|||.|-+||-|-.
T Consensus 435 tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~v--g~vtc~aFSP~sG~lAvGNe---------- 502 (514)
T KOG2055|consen 435 TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKV--GHVTCMAFSPNSGYLAVGNE---------- 502 (514)
T ss_pred heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcc--cceEEEEecCCCceEEeecC----------
Confidence 45789999999999999876 779998886 333333333222111 12789999999999999876
Q ss_pred CCCeEEEEeC
Q 011970 389 SAGSINVSSI 398 (474)
Q Consensus 389 ~DgtIklWdi 398 (474)
+|.+.||.+
T Consensus 503 -~grv~l~kL 511 (514)
T KOG2055|consen 503 -AGRVHLFKL 511 (514)
T ss_pred -CCceeeEee
Confidence 899999986
No 145
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=7.9e-18 Score=177.45 Aligned_cols=233 Identities=11% Similarity=0.062 Sum_probs=162.5
Q ss_pred CCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeecccc
Q 011970 107 SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLK 186 (474)
Q Consensus 107 dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~ 186 (474)
+..+.+||.. |....+|.. +.+.+.++.|||||+.|+.+|... .+ .++.+|++.+|+.. ..... ..
T Consensus 183 ~~~i~i~d~d-g~~~~~lt~-~~~~v~~p~wSPDG~~la~~s~~~-~~------~~i~i~dl~tg~~~----~l~~~-~g 248 (429)
T PRK01742 183 PYEVRVADYD-GFNQFIVNR-SSQPLMSPAWSPDGSKLAYVSFEN-KK------SQLVVHDLRSGARK----VVASF-RG 248 (429)
T ss_pred eEEEEEECCC-CCCceEecc-CCCccccceEcCCCCEEEEEEecC-CC------cEEEEEeCCCCceE----EEecC-CC
Confidence 5799999976 666777775 567899999999999999987432 33 57899999888741 11111 12
Q ss_pred CceEEEEeCCCCeEEEEec-CCCcEEEe--ecCCCeEEEEEc--CCcEEEEEEcCCce-EEEEecCCCCccEEEEecCC-
Q 011970 187 WPGFVEFDDVNGKVLTYSA-QDSIYKVF--DLKNYTMLYSIS--DKHVQEIKISPGIM-LLIFNRSSSHVPLKILSIED- 259 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s-~D~tiKlW--dl~tg~~l~tl~--~~~V~~vafSpg~~-la~~s~~s~D~tIkLWdi~t- 259 (474)
+...++|+ |||+.|++++ .|+.++|| |+.++++ ..+. ...+.+++|||++. |+..+ ..++..+||++..
T Consensus 249 ~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s--~~~g~~~I~~~~~~ 324 (429)
T PRK01742 249 HNGAPAFS-PDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTS--DRSGSPQVYRMSAS 324 (429)
T ss_pred ccCceeEC-CCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEE--CCCCCceEEEEECC
Confidence 23368998 7999888765 68877766 6666664 3343 34578899998654 44443 2346677876643
Q ss_pred CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEE
Q 011970 260 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 338 (474)
Q Consensus 260 G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIkl 338 (474)
|.....+ ++.. ..++|+ |+++++++.+.++.+ +||+.+|++.....++ ...++.|+|||++|+.++ ++.+++
T Consensus 325 ~~~~~~l-~~~~--~~~~~S-pDG~~ia~~~~~~i~-~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~ 397 (429)
T PRK01742 325 GGGASLV-GGRG--YSAQIS-ADGKTLVMINGDNVV-KQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKV 397 (429)
T ss_pred CCCeEEe-cCCC--CCccCC-CCCCEEEEEcCCCEE-EEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceE
Confidence 2222223 3322 456675 678888887766555 5999999876554333 235678999999999998 898888
Q ss_pred EeC---CCcEEEEeccCCCCcCCCCeeEEEECCC
Q 011970 339 WNF---RGELVTSFEDHLLWHPDCNTNNIYITSD 369 (474)
Q Consensus 339 Wd~---~G~ll~tl~gH~~~~~~~~v~svafSpD 369 (474)
|++ +|++++.|.+|... ++..+|||-
T Consensus 398 l~~~~~~G~~~~~l~~~~g~-----~~~p~wsp~ 426 (429)
T PRK01742 398 LQLVSADGRFKARLPGSDGQ-----VKFPAWSPY 426 (429)
T ss_pred EEEEECCCCceEEccCCCCC-----CCCcccCCC
Confidence 775 69999999988775 567888884
No 146
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.79 E-value=4.2e-18 Score=175.53 Aligned_cols=245 Identities=15% Similarity=0.195 Sum_probs=181.5
Q ss_pred cccccEEEEEee---ccEEEEeeCCCeEEeeeccc--ccee--------eEeecCCCceEEEEEEeeCCC-EEEEEEeec
Q 011970 86 MKRTKVIEIVAA---RDIVFALAHSGVCAAFSRET--NRRI--------CFLNVSPDEVIRSLFYNKNND-SLITVSVYA 151 (474)
Q Consensus 86 ~~~~~V~~i~~s---~~~las~s~dgtiklW~~~t--g~~l--------~~l~g~~~~~i~sv~fspdg~-~Lis~S~~~ 151 (474)
+|...|..+..- -.+||+.+.++.+.+||..+ ++.. ..|.|++.+ =++|.||++-+ .|++ +
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~e-g~glsWn~~~~g~Lls----~ 196 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKE-GYGLSWNRQQEGTLLS----G 196 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccc-ccccccccccceeEee----c
Confidence 444444444443 67899999999999999764 2221 268885553 58899998865 4666 4
Q ss_pred CCCccceeeeEEEEeEeccCCC----CCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCC--CeEEEEEc
Q 011970 152 SDNFSSLKCRSTKIEYIRRGKP----DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN--YTMLYSIS 225 (474)
Q Consensus 152 s~d~s~Lk~~~~~iw~i~~G~~----~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t--g~~l~tl~ 225 (474)
++| +++.+|||..... ..-...|. +|..-+..|+|.+-+..+++|++.|+.+.|||+.+ -++.++..
T Consensus 197 ~~d------~~i~lwdi~~~~~~~~~~~p~~~~~-~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ 269 (422)
T KOG0264|consen 197 SDD------HTICLWDINAESKEDKVVDPKTIFS-GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVK 269 (422)
T ss_pred cCC------CcEEEEeccccccCCccccceEEee-cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCccccc
Confidence 577 8999999954433 22223444 35556778999988999999999999999999985 33444443
Q ss_pred --CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCC-eEEEEEeecCcceeEEEEEecCCCeEEE-EeCCCcEEEEEC
Q 011970 226 --DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG-TVLKVFYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDV 300 (474)
Q Consensus 226 --~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG-~~L~tl~~h~~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv 300 (474)
...|++|+|+| +..++++ +|.|+||+|||+++= +++.+|++|...|+.|.|+ |..+.+|+ ++.|+.+.+||+
T Consensus 270 ah~~~vn~~~fnp~~~~ilAT--~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WS-Ph~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 270 AHSAEVNCVAFNPFNEFILAT--GSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWS-PHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred ccCCceeEEEeCCCCCceEEe--ccCCCcEEEeechhcccCceeccCCCcceEEEEeC-CCCCceeEecccCCcEEEEec
Confidence 56899999998 4444443 366999999999863 5789999999999999998 55666666 579999999998
Q ss_pred CC-Cc-------------eEEeccccCCceEEEEEcCCCc-EEEEEc-CCcEEEEeCCCcE
Q 011970 301 RN-AE-------------LMEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFRGEL 345 (474)
Q Consensus 301 ~t-g~-------------~~~~l~~h~~~v~sv~Fspdg~-llaS~s-D~tIklWd~~G~l 345 (474)
.. |+ ++=+=.||...|..|.|.|.-. +++|.+ |+.++||.....+
T Consensus 347 s~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i 407 (422)
T KOG0264|consen 347 SRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAENI 407 (422)
T ss_pred cccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccccc
Confidence 75 22 2233478999999999998655 556667 9999999976443
No 147
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=1.1e-17 Score=170.46 Aligned_cols=221 Identities=16% Similarity=0.176 Sum_probs=176.1
Q ss_pred ccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCC
Q 011970 169 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSS 248 (474)
Q Consensus 169 ~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~ 248 (474)
+.|+.+...+++. +|...+..++|+|-|.+.|||||.|.+|+||++.. +.|. .
T Consensus 66 k~Gr~d~~~P~v~-GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe--------------------~~l~-~----- 118 (472)
T KOG0303|consen 66 KTGRMDASYPLVC-GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPE--------------------NGLT-R----- 118 (472)
T ss_pred cccccCCCCCCcc-CccccccccccCccCCceeecCCCCceEEEEECCC--------------------cccc-c-----
Confidence 5788888888877 47777778999999999999999999999999743 2111 0
Q ss_pred CccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEE
Q 011970 249 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF 328 (474)
Q Consensus 249 D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~ll 328 (474)
+- + +....|.||+.+|.-|++.|--..-|++++.|.+|.|||+.||+.+-++. |.+.|+++.|+.||.+|
T Consensus 119 ~l--------t-epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l 188 (472)
T KOG0303|consen 119 DL--------T-EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLL 188 (472)
T ss_pred Cc--------c-cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCcee
Confidence 00 1 66788999999999999987666778888999999999999999888877 99999999999999999
Q ss_pred EEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC---CCeE
Q 011970 329 LTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL---TGKC 403 (474)
Q Consensus 329 aS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~---tG~c 403 (474)
+|.+ |+.|+|||.+ |+.+..-.+|.+.-+ .-+.|-.+|+ |++.+.+ .-++..|-|||-. +.--
T Consensus 189 ~TtckDKkvRv~dpr~~~~v~e~~~heG~k~----~Raifl~~g~-i~tTGfs-------r~seRq~aLwdp~nl~eP~~ 256 (472)
T KOG0303|consen 189 CTTCKDKKVRVIDPRRGTVVSEGVAHEGAKP----ARAIFLASGK-IFTTGFS-------RMSERQIALWDPNNLEEPIA 256 (472)
T ss_pred eeecccceeEEEcCCCCcEeeecccccCCCc----ceeEEeccCc-eeeeccc-------cccccceeccCcccccCcce
Confidence 9999 9999999995 999998888988532 3466888999 5554442 3458899999853 2333
Q ss_pred EEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE-EcCCCcEEEcc
Q 011970 404 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT-GNRHGLVHVWS 473 (474)
Q Consensus 404 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaS-gs~DgtVklWd 473 (474)
+++|...+ .|.==+|+||-++||- |-.|+.||.+.
T Consensus 257 ~~elDtSn-----------------------------------Gvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 257 LQELDTSN-----------------------------------GVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred eEEeccCC-----------------------------------ceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 45554433 5767899999999885 45799998764
No 148
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=3.6e-17 Score=162.47 Aligned_cols=239 Identities=11% Similarity=0.137 Sum_probs=178.2
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEE
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~t 265 (474)
.|-+|.|+ |.+..|+.+|+||+++|+|+..-.++..+. +..+.+++|-|....+++ +-|+.||+.|+.+|+..+.
T Consensus 15 ~IS~v~f~-~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G---~~dg~vr~~Dln~~~~~~i 90 (323)
T KOG1036|consen 15 GISSVKFS-PSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTG---GLDGQVRRYDLNTGNEDQI 90 (323)
T ss_pred ceeeEEEc-CcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEe---ccCceEEEEEecCCcceee
Confidence 45589999 566666667799999999998877666664 679999999998887776 5589999999999988766
Q ss_pred EeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC--
Q 011970 266 FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-- 342 (474)
Q Consensus 266 l~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-- 342 (474)
.. |...+..|.++ +-.+.+++||+|++||+||.++..+..++.... .|.+. +-.|..|+.|. |+.|.+||++
T Consensus 91 gt-h~~~i~ci~~~-~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~--~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 91 GT-HDEGIRCIEYS-YEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCM--DVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred cc-CCCceEEEEee-ccCCeEEEcccCccEEEEeccccccccccccCc-eEEEE--eccCCEEEEeecCceEEEEEcccc
Confidence 55 66889999998 456889999999999999999855544433222 45444 44455566655 9999999995
Q ss_pred CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE----EEEecCCCCCCCCcc
Q 011970 343 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC----LAKINATNCSPKVDD 418 (474)
Q Consensus 343 G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c----l~tl~gH~~~~~~~~ 418 (474)
.+..+.-+-.... .+++|++-|++.=.|.+|- ||.|-+=.+.+-++ -..|+.|...-++.
T Consensus 166 ~~~~q~reS~lky----qtR~v~~~pn~eGy~~sSi-----------eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~- 229 (323)
T KOG1036|consen 166 DEPFQRRESSLKY----QTRCVALVPNGEGYVVSSI-----------EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT- 229 (323)
T ss_pred cchhhhcccccee----EEEEEEEecCCCceEEEee-----------cceEEEEccCCchHHhhhceeEEeeecccCCc-
Confidence 5544333322222 2799999998887887776 89888776666533 34678887411111
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 419 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
..+ =+|.+++|+|--+++|||+.||-|-+||.
T Consensus 230 ----------------~~~--------yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 230 ----------------EII--------YPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred ----------------eEE--------EEeceeEeccccceEEecCCCceEEEccC
Confidence 000 17999999999999999999999999983
No 149
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.77 E-value=3.4e-17 Score=163.74 Aligned_cols=275 Identities=11% Similarity=0.126 Sum_probs=203.8
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCc---cceeeec-cccCce---------E--EEEe
Q 011970 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG---FALFESE-SLKWPG---------F--VEFD 194 (474)
Q Consensus 130 ~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~---~~lf~~~-~~~~~~---------~--V~Fs 194 (474)
+...+.-|||||..|.+-| .| ...++|.++.--..+. ..+|... .+..+. . ..-+
T Consensus 50 nf~kgckWSPDGSciL~~s----ed------n~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~ 119 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLS----ED------NCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSD 119 (406)
T ss_pred hhhccceeCCCCceEEeec----cc------CeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccC
Confidence 3445567999999888755 44 4666666632221110 1122211 111110 0 1223
Q ss_pred CCCCeEEEEecCCCcEEEeecCCCeEEEEEcC----Cc---EEEEEEcCCceEEEEecCCCCccEEEEec-CCCeEE---
Q 011970 195 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KH---VQEIKISPGIMLLIFNRSSSHVPLKILSI-EDGTVL--- 263 (474)
Q Consensus 195 ~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~----~~---V~~vafSpg~~la~~s~~s~D~tIkLWdi-~tG~~L--- 263 (474)
.|+-.+.|+++.|.-|++||.-||++..+.+. +. -.+++|||++.-+.+ +.-.+||++|+ +.|.-.
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa---GykrcirvFdt~RpGr~c~vy 196 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA---GYKRCIRVFDTSRPGRDCPVY 196 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee---cccceEEEeeccCCCCCCcch
Confidence 57888999999999999999999998877762 23 457999985554443 44578999999 666432
Q ss_pred EEEe----ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc--CCcEE
Q 011970 264 KVFY----HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVA 337 (474)
Q Consensus 264 ~tl~----~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~tIk 337 (474)
.|+. +..+-+..++|+|-+...++.++...++-|+.-..+.++.++.||.+.|+-+.|-+||+.|.+|+ |-.|-
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl 276 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKIL 276 (406)
T ss_pred hhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEE
Confidence 2222 23456688999977666778899999999999999999999999999999999999999999997 88999
Q ss_pred EEeCC--CcEEEEeccCCCCcCCCCeeEEEE--CCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEecCCCC
Q 011970 338 VWNFR--GELVTSFEDHLLWHPDCNTNNIYI--TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNC 412 (474)
Q Consensus 338 lWd~~--G~ll~tl~gH~~~~~~~~v~svaf--SpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gH~~ 412 (474)
.||++ ++.|..|+.|..- .+ .-|.| -|+|++||||+. ||.|++||+.+ |..+..+..|++
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~---TN-QRI~FDld~~~~~LasG~t-----------dG~V~vwdlk~~gn~~sv~~~~sd 341 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGD---TN-QRILFDLDPKGEILASGDT-----------DGSVRVWDLKDLGNEVSVTGNYSD 341 (406)
T ss_pred EEeehhccchhhhhhhhccC---cc-ceEEEecCCCCceeeccCC-----------CccEEEEecCCCCCcccccccccc
Confidence 99995 8999999999763 12 34665 688999999876 99999999988 887777777775
Q ss_pred CCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCC
Q 011970 413 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 466 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~D 466 (474)
-|..|+++|-=.++|++|..
T Consensus 342 ----------------------------------~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 342 ----------------------------------TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ----------------------------------cccceecCcccceeeeccCc
Confidence 78889999999999988753
No 150
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.77 E-value=4.1e-17 Score=168.65 Aligned_cols=289 Identities=15% Similarity=0.159 Sum_probs=208.4
Q ss_pred cCCCceEEEEEEeeCCC-EEEEEEeecCCCccceeeeEEEEeEeccCC-CCCccceeeeccccCceEEEEeCCCCeEEEE
Q 011970 126 VSPDEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRRGK-PDSGFALFESESLKWPGFVEFDDVNGKVLTY 203 (474)
Q Consensus 126 g~~~~~i~sv~fspdg~-~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~-~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS 203 (474)
..+.+.|.+++|.|--. .|+.++ . |..+|-+|++...+ -..++.+|+. |...|..+.|+|.|-..+.+
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~G---d------K~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVG---D------KGGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred EecccceEEEEecccCcceEEEEc---c------CCCcEEEEecCCCCCccCceEEecc-CCccccceEecCCChhheee
Confidence 35778899999999865 555443 1 23789999985333 3445667875 55667789999877777888
Q ss_pred ecCCCcEEEeecCCCe--EEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeE-EEEEeecCcceeEEE
Q 011970 204 SAQDSIYKVFDLKNYT--MLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTV-LKVFYHLLHRNKKVD 277 (474)
Q Consensus 204 ~s~D~tiKlWdl~tg~--~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~-L~tl~~h~~~v~~V~ 277 (474)
+|.|||||+=|++++. .++++.+ .+..+..|+. ...++.+. .-+...+||+.++.- ..-+.-|...|.+|+
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~---~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGD---NVGNFNVIDLRTDGSEYENLRLHKKKITSVA 329 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEee---cccceEEEEeecCCccchhhhhhhcccceee
Confidence 9999999999999876 5667643 3567888884 55666552 234788999988654 555666777999999
Q ss_pred EEecCCCeEEEEeCCCcEEEEECCCCce----EEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-----CcEEE
Q 011970 278 FIEQFNEKLLVKQENENLQILDVRNAEL----MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-----GELVT 347 (474)
Q Consensus 278 F~~~~~~~ll~~~~D~tIkIWDv~tg~~----~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-----G~ll~ 347 (474)
+.|.....|+++|.|+|.||||+++-.- +--...|...|.++-|||.|-.|+|-+ |.+|+|||.. -+.+.
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~ 409 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLG 409 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccc
Confidence 9998889999999999999999997322 122345888999999999888899998 9999999973 22233
Q ss_pred Eec---cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCC
Q 011970 348 SFE---DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSS 424 (474)
Q Consensus 348 tl~---gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~ 424 (474)
++. .|.-|.. .-..+|.||-.+|+.|-. -.-|-|.|-..||.+..|-+-..
T Consensus 410 ~I~Hn~~t~RwlT---~fKA~W~P~~~li~vg~~-----------~r~IDv~~~~~~q~v~el~~P~~------------ 463 (498)
T KOG4328|consen 410 TIPHNNRTGRWLT---PFKAAWDPDYNLIVVGRY-----------PRPIDVFDGNGGQMVCELHDPES------------ 463 (498)
T ss_pred eeeccCccccccc---chhheeCCCccEEEEecc-----------CcceeEEcCCCCEEeeeccCccc------------
Confidence 332 1112321 245779999999999876 45599999777776776633221
Q ss_pred CCccccccccccccccccccccCEEE-EEEcCCCCEEEEE-cCCCcEEEccC
Q 011970 425 TGKSKKLNKSSYIRSTVGEALEDITS-LFYDEERNEIYTG-NRHGLVHVWSN 474 (474)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~l~~V~s-lafSpDg~~LaSg-s~DgtVklWd~ 474 (474)
+ .|.+ ..|+|-+..|++| +..|.|.||-+
T Consensus 464 --------------~-------tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 464 --------------S-------TIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred --------------c-------ccccceeecccccceeccCCccceEEEEec
Confidence 0 2222 5799999955555 57899999854
No 151
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=6.2e-17 Score=161.45 Aligned_cols=284 Identities=14% Similarity=0.170 Sum_probs=205.6
Q ss_pred ceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCC
Q 011970 119 RRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (474)
Q Consensus 119 ~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG 198 (474)
++-+||.-.+ -.++-||+.|.+||.+-+ | ..+-|||.-+-..-. .++ .|...+-++++| +||
T Consensus 16 el~~tld~~~---a~~~~Fs~~G~~lAvGc~----n------G~vvI~D~~T~~iar---~ls-aH~~pi~sl~WS-~dg 77 (405)
T KOG1273|consen 16 ELTHTLDNPL---AECCQFSRWGDYLAVGCA----N------GRVVIYDFDTFRIAR---MLS-AHVRPITSLCWS-RDG 77 (405)
T ss_pred hhceeccCCc---cceEEeccCcceeeeecc----C------CcEEEEEccccchhh---hhh-ccccceeEEEec-CCC
Confidence 3445665323 679999999999998654 4 578899986655322 333 367778899998 799
Q ss_pred eEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC--CceEEEEecCCCCccEEEEecCCC--eEEEEEe-ecCcc
Q 011970 199 KVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDG--TVLKVFY-HLLHR 272 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG--~~L~tl~-~h~~~ 272 (474)
+.|.++|.|..|++||+..|.+++.+. ...||.+.|+| ..+.++.--. ..-.+-++.++ .+|-.=. +.+..
T Consensus 78 r~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~---~sp~vi~~s~~~h~~Lp~d~d~dln~ 154 (405)
T KOG1273|consen 78 RKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIME---ESPVVIDFSDPKHSVLPKDDDGDLNS 154 (405)
T ss_pred CEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEec---CCcEEEEecCCceeeccCCCcccccc
Confidence 999999999999999999999999887 67899999998 3333322111 11223333222 2221110 11111
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccC-CceEEEEEcCCCcEEEEEc-CCcEEEEeCC-----C--
Q 011970 273 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-----G-- 343 (474)
Q Consensus 273 v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~-~~v~sv~Fspdg~llaS~s-D~tIklWd~~-----G-- 343 (474)
+-+--|..+.|+++++|-..|-+-++|..|-+|+..++-.. ..|..+.|+-.|+.|+.-. |++||.++.+ |
T Consensus 155 sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~ 234 (405)
T KOG1273|consen 155 SASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD 234 (405)
T ss_pred ccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc
Confidence 21111223668899999999999999999999998766544 6888999999999999987 9999999963 1
Q ss_pred -cE--EE---EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCc
Q 011970 344 -EL--VT---SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVD 417 (474)
Q Consensus 344 -~l--l~---tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~ 417 (474)
+. .+ .+-.-..| +.+.||.||.|+..++. ....+.||.-.+|.+++.|.|..+
T Consensus 235 ~e~e~~~K~qDvVNk~~W------k~ccfs~dgeYv~a~s~----------~aHaLYIWE~~~GsLVKILhG~kg----- 293 (405)
T KOG1273|consen 235 GEVEPEHKLQDVVNKLQW------KKCCFSGDGEYVCAGSA----------RAHALYIWEKSIGSLVKILHGTKG----- 293 (405)
T ss_pred CCcChhHHHHHHHhhhhh------hheeecCCccEEEeccc----------cceeEEEEecCCcceeeeecCCch-----
Confidence 21 11 22234456 68999999999998764 478999999999999999988663
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 418 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
+..-.|.++|-...|+|- ..|+|.+|.
T Consensus 294 ----------------------------E~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 294 ----------------------------EELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred ----------------------------hheeecccccceeeeeec-cCCceEEEE
Confidence 134457899999999988 788999995
No 152
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.76 E-value=9e-17 Score=160.90 Aligned_cols=226 Identities=15% Similarity=0.198 Sum_probs=168.1
Q ss_pred CeEEEEecCCCcEEEeecCCCeEEEEE--cCCcEEEEEEcCCc--eEEEEecCCCCccEEEEecCCCeEEEEEe---ecC
Q 011970 198 GKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKISPGI--MLLIFNRSSSHVPLKILSIEDGTVLKVFY---HLL 270 (474)
Q Consensus 198 Gk~LaS~s~D~tiKlWdl~tg~~l~tl--~~~~V~~vafSpg~--~la~~s~~s~D~tIkLWdi~tG~~L~tl~---~h~ 270 (474)
..+||.++.-|.|||-|+.+++|...+ ++..|.+|+|.|.. .++++ |.|.+||||||+++.|+..|- ||.
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~---SkD~svRlwnI~~~~Cv~VfGG~egHr 181 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSA---SKDHSVRLWNIQTDVCVAVFGGVEGHR 181 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEe---cCCceEEEEeccCCeEEEEeccccccc
Confidence 458999999999999999999987655 57789999999844 55554 668999999999999999986 799
Q ss_pred cceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceE---Eec---c------------cc----------CCceEEEEEc
Q 011970 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM---EVS---R------------TE----------FMTPSAFIFL 322 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~---~~l---~------------~h----------~~~v~sv~Fs 322 (474)
++|.+|+|+ .+++++++++.|.+|++|++...+.. +.. . .| ...|-.+-|
T Consensus 182 deVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw- 259 (385)
T KOG1034|consen 182 DEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW- 259 (385)
T ss_pred CcEEEEEEc-CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH-
Confidence 999999998 67899999999999999999854422 111 0 11 111111111
Q ss_pred CCCcEEEEEc-CCcEEEEeC-C-CcE---------EEEeccCCCCcCCCCeeEEEEC--CCCCEEEEEecCCCccccccC
Q 011970 323 YENQLFLTFR-NRTVAVWNF-R-GEL---------VTSFEDHLLWHPDCNTNNIYIT--SDQDLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 323 pdg~llaS~s-D~tIklWd~-~-G~l---------l~tl~gH~~~~~~~~v~svafS--pDg~~LaS~s~~~~~~~~~~s 388 (474)
-|.+++|=| ++.|-.|.. + +|- -.|.-++-. ++.|.+|-|-|+ |-++.||.|..
T Consensus 260 -~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~-~~~c~iWfirf~~d~~~~~la~gnq---------- 327 (385)
T KOG1034|consen 260 -FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD-YPMCDIWFIRFAFDPWQKMLALGNQ---------- 327 (385)
T ss_pred -HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec-cCccceEEEEEeecHHHHHHhhccC----------
Confidence 278899988 999999997 3 332 223333333 466778877665 55899998765
Q ss_pred CCCeEEEEeCCCCeE--EEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCC
Q 011970 389 SAGSINVSSILTGKC--LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH 466 (474)
Q Consensus 389 ~DgtIklWdi~tG~c--l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~D 466 (474)
-|+|.+||+..-+. ..||.-+.. + ..|...+||.||.+|+--..|
T Consensus 328 -~g~v~vwdL~~~ep~~~ttl~~s~~-----------~---------------------~tVRQ~sfS~dgs~lv~vcdd 374 (385)
T KOG1034|consen 328 -SGKVYVWDLDNNEPPKCTTLTHSKS-----------G---------------------STVRQTSFSRDGSILVLVCDD 374 (385)
T ss_pred -CCcEEEEECCCCCCccCceEEeccc-----------c---------------------ceeeeeeecccCcEEEEEeCC
Confidence 89999999976543 223322221 1 279999999999999999999
Q ss_pred CcEEEcc
Q 011970 467 GLVHVWS 473 (474)
Q Consensus 467 gtVklWd 473 (474)
++|--||
T Consensus 375 ~~Vwrwd 381 (385)
T KOG1034|consen 375 GTVWRWD 381 (385)
T ss_pred CcEEEEE
Confidence 9998887
No 153
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.75 E-value=1.8e-17 Score=168.16 Aligned_cols=201 Identities=16% Similarity=0.247 Sum_probs=163.3
Q ss_pred CCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEE
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 276 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V 276 (474)
|..+.|+=|.-|.|+|||+. ..++.++. |+.... + ..-+.|.++++|...=+.+
T Consensus 164 ~~~~~aswse~G~V~Vw~l~--~~l~~l~~---------~~~~~~-------~--------s~~~Pl~t~~ghk~EGy~L 217 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLA--PHLNALSE---------PGLEVK-------D--------SEFRPLFTFNGHKGEGYGL 217 (440)
T ss_pred CcceeeeecccCcEEEEEch--hhhhhhcC---------cccccc-------c--------cccCceEEecccCccceee
Confidence 67788888899999999974 34444432 222110 0 1236788999998888999
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCceE---EeccccCCceEEEEEcC-CCcEEEEEc-CCcEEEEeCC-C---cEEE
Q 011970 277 DFIEQFNEKLLVKQENENLQILDVRNAELM---EVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-G---ELVT 347 (474)
Q Consensus 277 ~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~---~~l~~h~~~v~sv~Fsp-dg~llaS~s-D~tIklWd~~-G---~ll~ 347 (474)
+|+|.-.+.|++|---+.|++|...+|.-. .-+.+|+..|..+.+|| +...|||+| |++|+|||++ | -|+.
T Consensus 218 dWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~ 297 (440)
T KOG0302|consen 218 DWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS 297 (440)
T ss_pred ecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE
Confidence 999866788888877889999999998754 23678999999999997 677888888 9999999996 7 4666
Q ss_pred EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC---CeEEEEecCCCCCCCCccccCCCC
Q 011970 348 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT---GKCLAKINATNCSPKVDDELGSSS 424 (474)
Q Consensus 348 tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t---G~cl~tl~gH~~~~~~~~~~~~~~ 424 (474)
+ +.|..- ||-|.|+.+--+||||+. ||+++|||+.+ |+.+++++-|..
T Consensus 298 ~-kAh~sD-----VNVISWnr~~~lLasG~D-----------dGt~~iwDLR~~~~~~pVA~fk~Hk~------------ 348 (440)
T KOG0302|consen 298 T-KAHNSD-----VNVISWNRREPLLASGGD-----------DGTLSIWDLRQFKSGQPVATFKYHKA------------ 348 (440)
T ss_pred e-eccCCc-----eeeEEccCCcceeeecCC-----------CceEEEEEhhhccCCCcceeEEeccC------------
Confidence 5 788774 789999999889999876 99999999854 788999999986
Q ss_pred CCccccccccccccccccccccCEEEEEEcCCC-CEEEEEcCCCcEEEccC
Q 011970 425 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg-~~LaSgs~DgtVklWd~ 474 (474)
.|++|.|+|.- ..|+.++.|.+|.|||+
T Consensus 349 ----------------------pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 349 ----------------------PITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred ----------------------CeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 89999999854 56888899999999985
No 154
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.75 E-value=6e-17 Score=168.87 Aligned_cols=275 Identities=17% Similarity=0.186 Sum_probs=208.8
Q ss_pred ccccccEEEEEee--ccEEEEeeCCCeEEeeecccc-c--e---eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCcc
Q 011970 85 LMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETN-R--R---ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFS 156 (474)
Q Consensus 85 ~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg-~--~---l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s 156 (474)
|.|..-|.++.++ ...++++. .|-||+||+..- . . |--|| .++-||+.-+.|||.+||+++ +-
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~--rdnyiRSckL~pdgrtLivGG----ea-- 486 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLN--RDNYIRSCKLLPDGRTLIVGG----EA-- 486 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccC--cccceeeeEecCCCceEEecc----cc--
Confidence 5678889999999 78888886 578999998631 1 1 22344 467899999999999999954 44
Q ss_pred ceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEE
Q 011970 157 SLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKI 234 (474)
Q Consensus 157 ~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vaf 234 (474)
-++.|||+..-.+.-...|-....-.+ .++.+ ||.|+.-++-.||.|.||||.+-.++..|++ +.+.+|.+
T Consensus 487 ----stlsiWDLAapTprikaeltssapaCy--ALa~s-pDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi 559 (705)
T KOG0639|consen 487 ----STLSIWDLAAPTPRIKAELTSSAPACY--ALAIS-PDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI 559 (705)
T ss_pred ----ceeeeeeccCCCcchhhhcCCcchhhh--hhhcC-CccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe
Confidence 678899986655410000111111111 47887 7999999999999999999999999999975 57999999
Q ss_pred cC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccC
Q 011970 235 SP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF 313 (474)
Q Consensus 235 Sp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~ 313 (474)
|+ |-.|-++ +-|.+||-||+++|..++... ....|+++-.. |.++.+++|=+++++-|......+ ...+.-|.
T Consensus 560 s~dGtklWTG---GlDntvRcWDlregrqlqqhd-F~SQIfSLg~c-P~~dWlavGMens~vevlh~skp~-kyqlhlhe 633 (705)
T KOG0639|consen 560 SKDGTKLWTG---GLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYC-PTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHE 633 (705)
T ss_pred cCCCceeecC---CCccceeehhhhhhhhhhhhh-hhhhheecccC-CCccceeeecccCcEEEEecCCcc-ceeecccc
Confidence 96 6666665 668999999999998765432 13578888876 668899999999999998855444 34456688
Q ss_pred CceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 011970 314 MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 391 (474)
Q Consensus 314 ~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg 391 (474)
.-|-++.|.|-|+.|+|.+ |+-+-.|..- |.-+-..+..+. |.++.+|.|.+||++||. |+
T Consensus 634 ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~Ss------VlsCDIS~ddkyIVTGSG-----------dk 696 (705)
T KOG0639|consen 634 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS------VLSCDISFDDKYIVTGSG-----------DK 696 (705)
T ss_pred cEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCc------ceeeeeccCceEEEecCC-----------Cc
Confidence 8999999999999999998 9999999984 876654444332 789999999999999976 76
Q ss_pred eEEEEeC
Q 011970 392 SINVSSI 398 (474)
Q Consensus 392 tIklWdi 398 (474)
..-++.+
T Consensus 697 kATVYeV 703 (705)
T KOG0639|consen 697 KATVYEV 703 (705)
T ss_pred ceEEEEE
Confidence 6666553
No 155
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=4e-17 Score=168.17 Aligned_cols=227 Identities=12% Similarity=0.142 Sum_probs=165.7
Q ss_pred CCeEEEEecCCCcEEEeecCCC---eEEEEE--------------------cCCcEEEEEEcC--CceEEEEecCCCCcc
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNY---TMLYSI--------------------SDKHVQEIKISP--GIMLLIFNRSSSHVP 251 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg---~~l~tl--------------------~~~~V~~vafSp--g~~la~~s~~s~D~t 251 (474)
-|.++|-|..|.+|-||||.=- .+..+| |.+.|.++++.- -..||++ |.|+|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSg---saD~T 267 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASG---SADKT 267 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEec---CCCce
Confidence 4789999999999999998521 121222 112355677763 4566654 66999
Q ss_pred EEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcE-EEE
Q 011970 252 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL-FLT 330 (474)
Q Consensus 252 IkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~l-laS 330 (474)
|+|||+.+|+|-+++.+|...|.+++|.+..++.||+|+.|++++|.|++.-.+...--.-...|..+++.|.... +++
T Consensus 268 V~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 268 VKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred EEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEE
Confidence 9999999999999999999999999999888899999999999999999953222110011235777888765543 444
Q ss_pred Ec-CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 331 FR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 331 ~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~-~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
+. ||+|+-.|.+ |+++.++..|... |.+|.+++.-. +|++++ .|+++|||++.- .--..
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~-----ISgl~~n~~~p~~l~t~s-----------~d~~Vklw~~~~-~~~~~ 410 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDE-----ISGLSVNIQTPGLLSTAS-----------TDKVVKLWKFDV-DSPKS 410 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCC-----cceEEecCCCCcceeecc-----------ccceEEEEeecC-CCCcc
Confidence 55 9999999995 9999999999987 67888888654 555554 499999999742 22222
Q ss_pred ecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEEcCCCcEEEccC
Q 011970 407 INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRHGLVHVWSN 474 (474)
Q Consensus 407 l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~-~LaSgs~DgtVklWd~ 474 (474)
...|.- .+....+.++.|+-- +||.|+..+.+||||+
T Consensus 411 v~~~~~-------------------------------~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 411 VKEHSF-------------------------------KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred cccccc-------------------------------cccceeecccCCCcceEEEecCccceEEEeec
Confidence 233331 112566778888765 4888889999999985
No 156
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.75 E-value=7.5e-17 Score=161.28 Aligned_cols=234 Identities=15% Similarity=0.169 Sum_probs=175.7
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCC--------CeEEE----EE---cCCcEEEEEEc-------CCceEEEEecCC
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKN--------YTMLY----SI---SDKHVQEIKIS-------PGIMLLIFNRSS 247 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~t--------g~~l~----tl---~~~~V~~vafS-------pg~~la~~s~~s 247 (474)
...+| |||.-|.+-+.|.++.+|+|.. +-... ++ .+..|.+..+= |..-|... .+
T Consensus 54 gckWS-PDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~--ss 130 (406)
T KOG2919|consen 54 GCKWS-PDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV--SS 130 (406)
T ss_pred cceeC-CCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee--cc
Confidence 35666 8999999999999999999752 11111 11 13455543332 44333333 25
Q ss_pred CCccEEEEecCCCeEEEEEe--ecCcce---eEEEEEecCCCeEEEEeCCCcEEEEEC-CCCceEEe---c-c---ccCC
Q 011970 248 SHVPLKILSIEDGTVLKVFY--HLLHRN---KKVDFIEQFNEKLLVKQENENLQILDV-RNAELMEV---S-R---TEFM 314 (474)
Q Consensus 248 ~D~tIkLWdi~tG~~L~tl~--~h~~~v---~~V~F~~~~~~~ll~~~~D~tIkIWDv-~tg~~~~~---l-~---~h~~ 314 (474)
.|.||+|||..||++..++. .|+..+ .+++|+ |||++|.+| ...+||++|+ +.|.--.+ + . +...
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs-~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS-PDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEec-CCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 68999999999999999887 355544 789998 677776655 8899999999 66753222 1 1 2356
Q ss_pred ceEEEEEcCC-CcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 011970 315 TPSAFIFLYE-NQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 391 (474)
Q Consensus 315 ~v~sv~Fspd-g~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg 391 (474)
-++.++|+|- ..++|.++ -+++-|++-. ++.++.|-||.+- |.-+.|.+||+.|.||+. -|-
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gG-----vThL~~~edGn~lfsGaR----------k~d 273 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGG-----VTHLQWCEDGNKLFSGAR----------KDD 273 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCC-----eeeEEeccCcCeeccccc----------CCC
Confidence 7788999984 55899999 8899999985 8899999999987 689999999999999986 378
Q ss_pred eEEEEeCC-CCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEE
Q 011970 392 SINVSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 470 (474)
Q Consensus 392 tIklWdi~-tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVk 470 (474)
.|-.|||. .++.+..|..|..-. =+.|. ....|+|++||||+.||.|+
T Consensus 274 kIl~WDiR~~~~pv~~L~rhv~~T------------------------------NQRI~-FDld~~~~~LasG~tdG~V~ 322 (406)
T KOG2919|consen 274 KILCWDIRYSRDPVYALERHVGDT------------------------------NQRIL-FDLDPKGEILASGDTDGSVR 322 (406)
T ss_pred eEEEEeehhccchhhhhhhhccCc------------------------------cceEE-EecCCCCceeeccCCCccEE
Confidence 89999995 467788998887410 12443 56689999999999999999
Q ss_pred EccC
Q 011970 471 VWSN 474 (474)
Q Consensus 471 lWd~ 474 (474)
+||+
T Consensus 323 vwdl 326 (406)
T KOG2919|consen 323 VWDL 326 (406)
T ss_pred EEec
Confidence 9985
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.75 E-value=3.8e-17 Score=170.17 Aligned_cols=253 Identities=13% Similarity=0.174 Sum_probs=187.0
Q ss_pred EEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe---E--EEEEcCC---cEEEEE
Q 011970 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---M--LYSISDK---HVQEIK 233 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~---~--l~tl~~~---~V~~va 233 (474)
+++|||...-.....+.-.+.++. +.++.+...|--+.|+.+.|..+++|. +.|+ . +..+.++ -|..+.
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~~pg--~~s~~w~~~n~lvvas~~gdk~~~~~~-K~g~~~~Vp~~~k~~gd~~~Cv~~~s 89 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTAEPG--DFSFNWQRRNFLVVASMAGDKVMRIKE-KDGKTPEVPRVRKLTGDNAFCVACAS 89 (673)
T ss_pred ceEEeecccccCccccccCCCCCc--ceeeeccccceEEEeecCCceeEEEec-ccCCCCccceeeccccchHHHHhhhh
Confidence 688999854333221111222211 446677644445677888999999997 5555 1 1122222 245555
Q ss_pred EcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecccc-
Q 011970 234 ISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE- 312 (474)
Q Consensus 234 fSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h- 312 (474)
+| +..++ ++..++|||||++.--|.+.+++|+..|..|.+.. .+++|++.+..|-|-|-.+.++....++...
T Consensus 90 ~S---~y~~s--gG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 90 QS---LYEIS--GGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred cc---eeeec--cCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCC
Confidence 55 44444 34468999999998778889999999999999974 5799999999999999999999887776654
Q ss_pred CCceEEEEEcCCCcEEEE-Ec-CCcEEEEeCCCc--EEEEeccCCCCcCCCCeeEEEECCCC-CEEEEEecCCCcccccc
Q 011970 313 FMTPSAFIFLYENQLFLT-FR-NRTVAVWNFRGE--LVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKAEPEDQWME 387 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS-~s-D~tIklWd~~G~--ll~tl~gH~~~~~~~~v~svafSpDg-~~LaS~s~~~~~~~~~~ 387 (474)
.+.|+-+.|||-.+.+++ ++ ||+|.|||++|. ...-.+.|..+ ...|+|+|-+ .+|+|-+.
T Consensus 164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP-----~~gicfspsne~l~vsVG~--------- 229 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAP-----CRGICFSPSNEALLVSVGY--------- 229 (673)
T ss_pred CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCC-----cCcceecCCccceEEEecc---------
Confidence 456668899998887776 46 999999999865 45566788877 5789999965 56666554
Q ss_pred CCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCC
Q 011970 388 GSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG 467 (474)
Q Consensus 388 s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dg 467 (474)
|+.|.|+|+...+...+|.... +.++|+|+|+|-+|+-|+..|
T Consensus 230 --Dkki~~yD~~s~~s~~~l~y~~-----------------------------------Plstvaf~~~G~~L~aG~s~G 272 (673)
T KOG4378|consen 230 --DKKINIYDIRSQASTDRLTYSH-----------------------------------PLSTVAFSECGTYLCAGNSKG 272 (673)
T ss_pred --cceEEEeecccccccceeeecC-----------------------------------CcceeeecCCceEEEeecCCc
Confidence 9999999998777766665433 788999999999999999999
Q ss_pred cEEEccC
Q 011970 468 LVHVWSN 474 (474)
Q Consensus 468 tVklWd~ 474 (474)
.|-.+|+
T Consensus 273 ~~i~YD~ 279 (673)
T KOG4378|consen 273 ELIAYDM 279 (673)
T ss_pred eEEEEec
Confidence 9988875
No 158
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.74 E-value=7.5e-17 Score=166.18 Aligned_cols=200 Identities=18% Similarity=0.213 Sum_probs=141.7
Q ss_pred eEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCeEE-
Q 011970 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVL- 263 (474)
Q Consensus 189 ~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~~L- 263 (474)
.++++.--.-.+|||||.|.||||||+.+|+|..++. ++.|++++|.| ...|+++ +.|++|+|-|.+.-.+.
T Consensus 247 l~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsG---s~D~~V~l~D~R~~~~s~ 323 (463)
T KOG0270|consen 247 LALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSG---SYDGTVALKDCRDPSNSG 323 (463)
T ss_pred HHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEec---cccceEEeeeccCccccC
Confidence 3455543334699999999999999999999999886 57899999997 6677765 67999999998742221
Q ss_pred EEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CceEEeccccCCceEEEEEcCCC-cEEEEEc-CCcEEEEe
Q 011970 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWN 340 (474)
Q Consensus 264 ~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t-g~~~~~l~~h~~~v~sv~Fspdg-~llaS~s-D~tIklWd 340 (474)
+.++ -.+.|-.|++.+...-.++++..||+++=.|+|+ |+++-++..|...|+.+.+++.. .+++|++ |++||||+
T Consensus 324 ~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 324 KEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWK 402 (463)
T ss_pred ceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEe
Confidence 1111 1256788888754445667778999999999998 59999999999999999998654 4577778 99999999
Q ss_pred CCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 011970 341 FRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 404 (474)
Q Consensus 341 ~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl 404 (474)
+.+.--+.-..|..-. ....+.++-|+--.+... +|..+-++|||+.++..+
T Consensus 403 ~~~~~~~~v~~~~~~~--~rl~c~~~~~~~a~~la~----------GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 403 FDVDSPKSVKEHSFKL--GRLHCFALDPDVAFTLAF----------GGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ecCCCCcccccccccc--cceeecccCCCcceEEEe----------cCccceEEEeecccChhH
Confidence 9533222222333211 012334455554433333 334678999999876544
No 159
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.73 E-value=7.1e-17 Score=157.92 Aligned_cols=301 Identities=13% Similarity=0.116 Sum_probs=192.2
Q ss_pred CCCCcccccccccccccEEEEEee-ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecC
Q 011970 74 PKGHCPFVLPFLMKRTKVIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYAS 152 (474)
Q Consensus 74 ~~~~~~~~~~~~~~~~~V~~i~~s-~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s 152 (474)
+|....+ +++ |.+.|.++.|- +++|.+|...|.+++|.++|.+.++.+.+.+...|..+-.-|++. |.| .+
T Consensus 3 pPdP~fv-LRp--~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~-l~t----qg 74 (323)
T KOG0322|consen 3 PPDPFFV-LRP--HSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS-LDT----QG 74 (323)
T ss_pred CCCCeeE-ecc--ccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc-hhh----cC
Confidence 3444444 566 88899999988 999999999999999999999999999987888999999999855 554 23
Q ss_pred CCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecC-CCeEEEEEc---CCc
Q 011970 153 DNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSIS---DKH 228 (474)
Q Consensus 153 ~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~-tg~~l~tl~---~~~ 228 (474)
.| -.+-+|+|.-+.+.. ...- -+++.+|..|| |...+. ...|-+. .++-.+..+ ...
T Consensus 75 Rd------~~L~lw~ia~s~~i~---i~Si-~~nslgFCrfS------l~~~~k---~~eqll~yp~rgsde~h~~D~g~ 135 (323)
T KOG0322|consen 75 RD------PLLILWTIAYSAFIS---IHSI-VVNSLGFCRFS------LVKKPK---NSEQLLEYPSRGSDETHKQDGGD 135 (323)
T ss_pred CC------ceEEEEEccCcceEE---Eeee-eccccccccce------eccCCC---cchhheecCCcccchhhhhccCc
Confidence 44 466678876655311 1111 12333344443 111111 1111110 000000011 011
Q ss_pred EEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceE--
Q 011970 229 VQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM-- 306 (474)
Q Consensus 229 V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~-- 306 (474)
-..|.+-|+.... +.|..+- .++.|-+-.--.|++|-+++.+-+||+.++..+
T Consensus 136 ~tqv~i~dd~~~~----------------Klgsvmc---------~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~ 190 (323)
T KOG0322|consen 136 TTQVQIADDSERS----------------KLGSVMC---------QDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQ 190 (323)
T ss_pred cceeEccCchhcc----------------ccCceee---------eeccccccceEEEEEeccCCeEEEEEccCCceeec
Confidence 1111221111000 0111100 111111100013455679999999999997322
Q ss_pred --------EeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC---CcEEEEeccCCCCcCCCCeeEEEECCCCCEEE
Q 011970 307 --------EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR---GELVTSFEDHLLWHPDCNTNNIYITSDQDLII 374 (474)
Q Consensus 307 --------~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~---G~ll~tl~gH~~~~~~~~v~svafSpDg~~La 374 (474)
.-...|...|.++.|-+.-..=++++ +..+-.|+++ |.|... .-|... +|.|+.|.+-|||+++|
T Consensus 191 ~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~-~e~~lk--npGv~gvrIRpD~KIlA 267 (323)
T KOG0322|consen 191 LPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR-KEITLK--NPGVSGVRIRPDGKILA 267 (323)
T ss_pred cccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc-ceEEec--CCCccceEEccCCcEEe
Confidence 12356888999998876655556777 7778899983 554221 112222 24488999999999999
Q ss_pred EEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEc
Q 011970 375 SYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD 454 (474)
Q Consensus 375 S~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafS 454 (474)
+++. |+.||+++..|++.|+.|+-|.. .|.+|||+
T Consensus 268 TAGW-----------D~RiRVyswrtl~pLAVLkyHsa----------------------------------gvn~vAfs 302 (323)
T KOG0322|consen 268 TAGW-----------DHRIRVYSWRTLNPLAVLKYHSA----------------------------------GVNAVAFS 302 (323)
T ss_pred eccc-----------CCcEEEEEeccCCchhhhhhhhc----------------------------------ceeEEEeC
Confidence 9866 99999999999999999999986 89999999
Q ss_pred CCCCEEEEEcCCCcEEEccC
Q 011970 455 EERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 455 pDg~~LaSgs~DgtVklWd~ 474 (474)
||-..+|.||.|+.|-||+.
T Consensus 303 pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 PDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCchhhhccCCceEEeeec
Confidence 99999999999999999973
No 160
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=3.7e-16 Score=173.48 Aligned_cols=305 Identities=12% Similarity=0.121 Sum_probs=207.5
Q ss_pred CeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccC
Q 011970 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKW 187 (474)
Q Consensus 108 gtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~ 187 (474)
.+|..||.. ++++ .+.+-+.+-|+|.-..||++ .++ -.|.+||...|++..+|..-.. ....
T Consensus 1050 ~~i~~W~~~------~~~~-n~~~pk~~~~hpf~p~i~~a----d~r------~~i~vwd~e~~~~l~~F~n~~~-~~t~ 1111 (1387)
T KOG1517|consen 1050 NPIGNWDQK------FMTG-NNQPPKTLKFHPFEPQIAAA----DDR------ERIRVWDWEKGRLLNGFDNGAF-PDTR 1111 (1387)
T ss_pred ccccchHHH------HHhc-CCCCCceeeecCCCceeEEc----CCc------ceEEEEecccCceeccccCCCC-CCCc
Confidence 345666644 3343 33456788999999988873 234 5889999999998554332111 1223
Q ss_pred ceEEEEe-CCCCeEEEEecCCCcEEEeec-CCC----eEEEEE---cC------CcEEEEEEcC-CceEEEEecCCCCcc
Q 011970 188 PGFVEFD-DVNGKVLTYSAQDSIYKVFDL-KNY----TMLYSI---SD------KHVQEIKISP-GIMLLIFNRSSSHVP 251 (474)
Q Consensus 188 ~~~V~Fs-~~nGk~LaS~s~D~tiKlWdl-~tg----~~l~tl---~~------~~V~~vafSp-g~~la~~s~~s~D~t 251 (474)
|-.++|- ..|-.+|.+|+.||.||||+- .++ +++... ++ +.=.=+.+-. .|.|+++ ++-..
T Consensus 1112 Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~t---Gd~r~ 1188 (1387)
T KOG1517|consen 1112 VSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVT---GDVRS 1188 (1387)
T ss_pred cceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEec---CCeeE
Confidence 3345552 123457889999999999962 222 233222 21 1111133332 5666665 33578
Q ss_pred EEEEecCCCeEEEEEee-cCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc---eEEeccccCCc--eEEEEEcCCC
Q 011970 252 LKILSIEDGTVLKVFYH-LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---LMEVSRTEFMT--PSAFIFLYEN 325 (474)
Q Consensus 252 IkLWdi~tG~~L~tl~~-h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~---~~~~l~~h~~~--v~sv~Fspdg 325 (474)
|+|||.+.-++.+.+.. -..-+.++.-....+..+++|-.||.||++|.+... .+.+.+.|+.. |.-+.|-+.|
T Consensus 1189 IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1189 IRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred EEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence 99999998888887763 223345555443445677778899999999999754 45678889988 8888888766
Q ss_pred cE-EEEEc-CCcEEEEeCCC-cEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 011970 326 QL-FLTFR-NRTVAVWNFRG-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 402 (474)
Q Consensus 326 ~l-laS~s-D~tIklWd~~G-~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~ 402 (474)
-- |+|++ ||.|++||+++ ...+.+.--..|.++..+..+..+++-.+||||+ .+.|+|||+ .|+
T Consensus 1269 ~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs------------~q~ikIy~~-~G~ 1335 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGS------------AQLIKIYSL-SGE 1335 (1387)
T ss_pred CcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecC------------cceEEEEec-Chh
Confidence 55 88998 99999999986 3344444334344444467899999999999986 489999996 799
Q ss_pred EEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 403 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 403 cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.+..++.+..+-. +.-..+.+|+|+|-.-.||.|+.|.+|-|+.
T Consensus 1336 ~l~~~k~n~~F~~---------------------------q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1336 QLNIIKYNPGFMG---------------------------QRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred hhcccccCccccc---------------------------CcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 9999987654211 1111678999999999999999999998874
No 161
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.72 E-value=5e-16 Score=161.90 Aligned_cols=276 Identities=10% Similarity=0.094 Sum_probs=198.9
Q ss_pred EEEeeCCCeEEeeecccccee-eEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccce
Q 011970 101 VFALAHSGVCAAFSRETNRRI-CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFAL 179 (474)
Q Consensus 101 las~s~dgtiklW~~~tg~~l-~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~l 179 (474)
|-.+|..-++||||...-... |++.-...-.+.++-|+..+. |+++|. +.| ..+++|. +.|+. .++|+
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~--~gd------k~~~~~~-K~g~~-~~Vp~ 73 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASM--AGD------KVMRIKE-KDGKT-PEVPR 73 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeec--CCc------eeEEEec-ccCCC-Cccce
Confidence 334455668999997643222 222222223489999999887 777763 445 6888887 77773 33444
Q ss_pred eeeccccC---ceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEc-CCceEEEEecCCCCccEE
Q 011970 180 FESESLKW---PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKIS-PGIMLLIFNRSSSHVPLK 253 (474)
Q Consensus 180 f~~~~~~~---~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafS-pg~~la~~s~~s~D~tIk 253 (474)
.+...... +....|| .++.+|++.++|||||++.-.|.+.+.+ ..|..|.+. .+-.||+.+- + +.|-
T Consensus 74 ~~k~~gd~~~Cv~~~s~S----~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~-g--Gdii 146 (673)
T KOG4378|consen 74 VRKLTGDNAFCVACASQS----LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSD-G--GDII 146 (673)
T ss_pred eeccccchHHHHhhhhcc----eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEecc-C--CcEE
Confidence 43311111 2234554 7999999999999999985446666654 579999999 5888887743 3 5688
Q ss_pred EEecCCCeEEEEEeec-CcceeEEEEEecCCCeEEE-EeCCCcEEEEECCCCceE-EeccccCCceEEEEEcCCCc-EEE
Q 011970 254 ILSIEDGTVLKVFYHL-LHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELM-EVSRTEFMTPSAFIFLYENQ-LFL 329 (474)
Q Consensus 254 LWdi~tG~~L~tl~~h-~~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv~tg~~~-~~l~~h~~~v~sv~Fspdg~-lla 329 (474)
|-++.|++--.+|.+. ...|+=+.|+ ++...||+ .++||+|.|||+.....+ ..+..|..+...|+|+|-+. +|+
T Consensus 147 ih~~~t~~~tt~f~~~sgqsvRll~ys-~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v 225 (673)
T KOG4378|consen 147 IHGTKTKQKTTTFTIDSGQSVRLLRYS-PSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV 225 (673)
T ss_pred EEecccCccccceecCCCCeEEEeecc-cccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE
Confidence 9999999988899854 4566788988 45566665 689999999999876654 45778999999999998665 455
Q ss_pred EEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEE
Q 011970 330 TFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAK 406 (474)
Q Consensus 330 S~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t-G~cl~t 406 (474)
|-+ |..|-++|.. -....+|.-.. ...+|+|+|+|.+|+.|+. .|.|--+|+.. -+.+++
T Consensus 226 sVG~Dkki~~yD~~s~~s~~~l~y~~------Plstvaf~~~G~~L~aG~s-----------~G~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 226 SVGYDKKINIYDIRSQASTDRLTYSH------PLSTVAFSECGTYLCAGNS-----------KGELIAYDMRSTKAPVAV 288 (673)
T ss_pred EecccceEEEeecccccccceeeecC------CcceeeecCCceEEEeecC-----------CceEEEEecccCCCCceE
Confidence 667 9999999995 44454554221 1478999999999998865 89999999954 467999
Q ss_pred ecCCCC
Q 011970 407 INATNC 412 (474)
Q Consensus 407 l~gH~~ 412 (474)
+.+|..
T Consensus 289 ~sah~~ 294 (673)
T KOG4378|consen 289 RSAHDA 294 (673)
T ss_pred eeeccc
Confidence 999986
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.72 E-value=4e-16 Score=161.38 Aligned_cols=266 Identities=15% Similarity=0.199 Sum_probs=188.8
Q ss_pred ccEEEEeeCCCeEEeeeccccc----eeeEeecCCCceEEEEEEeeCCCE-EEEEEeecCCCccceeeeEEEEeEeccCC
Q 011970 98 RDIVFALAHSGVCAAFSRETNR----RICFLNVSPDEVIRSLFYNKNNDS-LITVSVYASDNFSSLKCRSTKIEYIRRGK 172 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~----~l~~l~g~~~~~i~sv~fspdg~~-Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~ 172 (474)
..+||+|+..|+|-+||..+.+ .+.-+++ |...|.++-|+|.+.. +.+.| .| .++|+-|+..+.
T Consensus 200 ~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~n~s~i~ssS----yD------GtiR~~D~~~~i 268 (498)
T KOG4328|consen 200 RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPANTSQIYSSS----YD------GTIRLQDFEGNI 268 (498)
T ss_pred ceEEEEccCCCcEEEEecCCCCCccCceEEecc-CCccccceEecCCChhheeeec----cC------ceeeeeeecchh
Confidence 4799999999999999995333 3455665 7789999999999764 44444 55 699999988877
Q ss_pred CCCccceeee-ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE---EEEEcCCcEEEEEEcC--CceEEEEecC
Q 011970 173 PDSGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSISDKHVQEIKISP--GIMLLIFNRS 246 (474)
Q Consensus 173 ~~~~~~lf~~-~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~---l~tl~~~~V~~vafSp--g~~la~~s~~ 246 (474)
... +... ....|.-...|+..++.+|+ +..=|..-+||+.++.- ...++...|.+|+++| ...||++
T Consensus 269 ~e~---v~s~~~d~~~fs~~d~~~e~~~vl~-~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~--- 341 (498)
T KOG4328|consen 269 SEE---VLSLDTDNIWFSSLDFSAESRSVLF-GDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATA--- 341 (498)
T ss_pred hHH---HhhcCccceeeeeccccCCCccEEE-eecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeec---
Confidence 522 1111 11234445677755555555 44444899999987553 3356677999999999 4556654
Q ss_pred CCCccEEEEecCC--CeE---EEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECC----CCceEEeccc---cCC
Q 011970 247 SSHVPLKILSIED--GTV---LKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR----NAELMEVSRT---EFM 314 (474)
Q Consensus 247 s~D~tIkLWdi~t--G~~---L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~----tg~~~~~l~~---h~~ 314 (474)
|-|+|+||||++. ++. |.++. |...|.++.|+ |.++.||+.+.|.+|||||.. .-+.+.+..+ +..
T Consensus 342 s~D~T~kIWD~R~l~~K~sp~lst~~-HrrsV~sAyFS-Ps~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~R 419 (498)
T KOG4328|consen 342 SLDQTAKIWDLRQLRGKASPFLSTLP-HRRSVNSAYFS-PSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGR 419 (498)
T ss_pred ccCcceeeeehhhhcCCCCcceeccc-ccceeeeeEEc-CCCCceEeeccCCceEEeecccccccCCccceeeccCcccc
Confidence 6799999999874 222 44444 77899999998 677889999999999999983 3333322222 223
Q ss_pred ceE--EEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCC-CcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 011970 315 TPS--AFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLL-WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 389 (474)
Q Consensus 315 ~v~--sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~-~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~ 389 (474)
|.+ ..+|-||-.+++.+. -+-|-|.|-+ |+++..|-+-.. .++ .-+.|+|=+..+|+|+. .
T Consensus 420 wlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~----~vn~~HP~~~~~~aG~~----------s 485 (498)
T KOG4328|consen 420 WLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIP----SVNEFHPMRDTLAAGGN----------S 485 (498)
T ss_pred cccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccc----cceeecccccceeccCC----------c
Confidence 333 457999999999999 7789999997 777888766554 221 23689999998888865 3
Q ss_pred CCeEEEEe
Q 011970 390 AGSINVSS 397 (474)
Q Consensus 390 DgtIklWd 397 (474)
-|.|.||-
T Consensus 486 ~Gki~vft 493 (498)
T KOG4328|consen 486 SGKIYVFT 493 (498)
T ss_pred cceEEEEe
Confidence 67888875
No 163
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=3.5e-15 Score=157.66 Aligned_cols=236 Identities=9% Similarity=0.055 Sum_probs=160.4
Q ss_pred eEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCc
Q 011970 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 188 (474)
Q Consensus 109 tiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~ 188 (474)
.+.+||.+ |...+.+.. +.+.+.+..|||||+.|+.++... .+ ..+.++++..|+.. .+... ....
T Consensus 180 ~l~~~d~d-g~~~~~lt~-~~~~~~~p~wSPDG~~la~~s~~~-g~------~~i~i~dl~~G~~~---~l~~~--~~~~ 245 (429)
T PRK03629 180 ELRVSDYD-GYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFES-GR------SALVIQTLANGAVR---QVASF--PRHN 245 (429)
T ss_pred eEEEEcCC-CCCCEEeec-CCCceeeeEEcCCCCEEEEEEecC-CC------cEEEEEECCCCCeE---EccCC--CCCc
Confidence 68888876 555555554 457899999999999999876432 33 47888998888742 12221 1223
Q ss_pred eEEEEeCCCCeEEEEe-cCCC--cEEEeecCCCeEEEEEc-CCcEEEEEEcCCce-EEEEecCCCCccEEEEecCCCeEE
Q 011970 189 GFVEFDDVNGKVLTYS-AQDS--IYKVFDLKNYTMLYSIS-DKHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGTVL 263 (474)
Q Consensus 189 ~~V~Fs~~nGk~LaS~-s~D~--tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~-la~~s~~s~D~tIkLWdi~tG~~L 263 (474)
..++|| |||+.|+.. +.++ .|.+||++++++..... ...+.+.+|||++. |+..+.......|.++|+.+|+..
T Consensus 246 ~~~~~S-PDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~ 324 (429)
T PRK03629 246 GAPAFS-PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ 324 (429)
T ss_pred CCeEEC-CCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE
Confidence 468998 799988865 3344 58899999987654333 34678899998554 544432111123555578777653
Q ss_pred EEEeecCcceeEEEEEecCCCeEEEEe-C--CCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCc---E
Q 011970 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQ-E--NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRT---V 336 (474)
Q Consensus 264 ~tl~~h~~~v~~V~F~~~~~~~ll~~~-~--D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~t---I 336 (474)
.+..+...+..+.|+ |+|.+++..+ . ...|.+||+.+++.......+ ...+..|+|||+.|+.++ |+. +
T Consensus 325 -~lt~~~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 325 -RITWEGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred -EeecCCCCccCEEEC-CCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCCceEE
Confidence 444333455677887 6788887754 3 346889999999866544332 234677999999999988 664 6
Q ss_pred EEEeCCCcEEEEeccCCCCcCCCCeeEEEECC
Q 011970 337 AVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 368 (474)
Q Consensus 337 klWd~~G~ll~tl~gH~~~~~~~~v~svafSp 368 (474)
.+|+++|+..+.+.+|... +...+|||
T Consensus 401 ~~~~~~G~~~~~l~~~~~~-----~~~p~Wsp 427 (429)
T PRK03629 401 NLVSTDGRFKARLPATDGQ-----VKFPAWSP 427 (429)
T ss_pred EEEECCCCCeEECccCCCC-----cCCcccCC
Confidence 7888889999999888765 45677776
No 164
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=3.2e-16 Score=166.09 Aligned_cols=238 Identities=12% Similarity=0.156 Sum_probs=185.2
Q ss_pred ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc---eEEEEecCC-----------
Q 011970 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGI---MLLIFNRSS----------- 247 (474)
Q Consensus 183 ~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~---~la~~s~~s----------- 247 (474)
+|.+-+.+++-+ |-|..||||+.|||+|||.+.||.|++++. +..|++|+|+|+. .||++-...
T Consensus 398 GHtg~Vr~iSvd-p~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~ 476 (733)
T KOG0650|consen 398 GHTGLVRSISVD-PSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDR 476 (733)
T ss_pred ccCCeEEEEEec-CCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccch
Confidence 456667788887 689999999999999999999999999998 7899999999832 333332110
Q ss_pred ------------------CCccEEEEecCCCeE----EEEEeecCcceeEEEEEecCCCeEEEE---eCCCcEEEEECCC
Q 011970 248 ------------------SHVPLKILSIEDGTV----LKVFYHLLHRNKKVDFIEQFNEKLLVK---QENENLQILDVRN 302 (474)
Q Consensus 248 ------------------~D~tIkLWdi~tG~~----L~tl~~h~~~v~~V~F~~~~~~~ll~~---~~D~tIkIWDv~t 302 (474)
.|..+-.|.-..-+. +...-.|-..+..|.+. -.|++|++. +....|-|.++..
T Consensus 477 ~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH-rkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 477 LEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH-RKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeee-cCCceEEEeccCCCcceEEEEeccc
Confidence 112234565331111 11112355778999998 568888884 4667888999887
Q ss_pred CceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCC
Q 011970 303 AELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEP 381 (474)
Q Consensus 303 g~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~ 381 (474)
..-..-++--.+.|-.+.|.|-.-+|+.++.+.|+|+|+ .+++++.|.-..-| |.+++++|.|+-|+.++.
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kw-----iS~msihp~GDnli~gs~--- 627 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKW-----ISSMSIHPNGDNLILGSY--- 627 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCee-----eeeeeecCCCCeEEEecC---
Confidence 665555544456788999999999999999999999999 58998888777778 689999999999999877
Q ss_pred ccccccCCCCeEEEEeCCC-CeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEE
Q 011970 382 EDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEI 460 (474)
Q Consensus 382 ~~~~~~s~DgtIklWdi~t-G~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~L 460 (474)
|+.+-..|+.- -+..++|+-|.. .|++|+|++-=..+
T Consensus 628 --------d~k~~WfDldlsskPyk~lr~H~~----------------------------------avr~Va~H~ryPLf 665 (733)
T KOG0650|consen 628 --------DKKMCWFDLDLSSKPYKTLRLHEK----------------------------------AVRSVAFHKRYPLF 665 (733)
T ss_pred --------CCeeEEEEcccCcchhHHhhhhhh----------------------------------hhhhhhhcccccee
Confidence 99998888753 467788888885 89999999999999
Q ss_pred EEEcCCCcEEEc
Q 011970 461 YTGNRHGLVHVW 472 (474)
Q Consensus 461 aSgs~DgtVklW 472 (474)
+|||.||+|.|.
T Consensus 666 as~sdDgtv~Vf 677 (733)
T KOG0650|consen 666 ASGSDDGTVIVF 677 (733)
T ss_pred eeecCCCcEEEE
Confidence 999999999875
No 165
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.70 E-value=5.7e-16 Score=165.17 Aligned_cols=241 Identities=14% Similarity=0.160 Sum_probs=165.7
Q ss_pred ceEEEEeCCC--CeEEEEecCCCcEEEeecCCCeEE------EE--EcCCcEEEEEEcCCceEEEEecCCCCccEEEEec
Q 011970 188 PGFVEFDDVN--GKVLTYSAQDSIYKVFDLKNYTML------YS--ISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSI 257 (474)
Q Consensus 188 ~~~V~Fs~~n--Gk~LaS~s~D~tiKlWdl~tg~~l------~t--l~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi 257 (474)
|..+.|++.. ..+||-+-.||-|.|+|.+.-... +- .|.+.|.++++-||.++++.. ++|.|||+||+
T Consensus 52 Pf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsa--sGDsT~r~Wdv 129 (720)
T KOG0321|consen 52 PFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSA--SGDSTIRPWDV 129 (720)
T ss_pred CccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEc--cCCceeeeeee
Confidence 3446776433 458999999999999997643321 22 235679999999988888774 66999999999
Q ss_pred CCCeEEEE--EeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc-------eE--------------------Ee
Q 011970 258 EDGTVLKV--FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-------LM--------------------EV 308 (474)
Q Consensus 258 ~tG~~L~t--l~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~-------~~--------------------~~ 308 (474)
+++++... +-||...+++++|.+.+..-+++|+.|+.|.|||++-.. |. ..
T Consensus 130 k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k 209 (720)
T KOG0321|consen 130 KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK 209 (720)
T ss_pred ccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence 99999877 889999999999986544555568899999999987422 11 11
Q ss_pred ccccCCceEE---EEEcCCCcEEEEEc--CCcEEEEeCC-CcEE------EEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 011970 309 SRTEFMTPSA---FIFLYENQLFLTFR--NRTVAVWNFR-GELV------TSFEDHLLWHPDCNTNNIYITSDQDLIISY 376 (474)
Q Consensus 309 l~~h~~~v~s---v~Fspdg~llaS~s--D~tIklWd~~-G~ll------~tl~gH~~~~~~~~v~svafSpDg~~LaS~ 376 (474)
...|...+.+ +.|.-|..+|||++ |++|||||++ -.+. ....-|..--.--.+.++..-.-|.+|...
T Consensus 210 ~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~As 289 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFAS 289 (720)
T ss_pred cccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEE
Confidence 2234455555 55666777788876 9999999985 3322 222212110000013455555667888877
Q ss_pred ecCCCccccccCCCCeEEEEeCCCC--eEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEc
Q 011970 377 CKAEPEDQWMEGSAGSINVSSILTG--KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYD 454 (474)
Q Consensus 377 s~~~~~~~~~~s~DgtIklWdi~tG--~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafS 454 (474)
|. |++|.+||+.+- ..++.+.||..+ .. .| .=..|
T Consensus 290 Ct-----------D~sIy~ynm~s~s~sP~~~~sg~~~~--------------------sf-----------~v-ks~lS 326 (720)
T KOG0321|consen 290 CT-----------DNSIYFYNMRSLSISPVAEFSGKLNS--------------------SF-----------YV-KSELS 326 (720)
T ss_pred ec-----------CCcEEEEeccccCcCchhhccCcccc--------------------ee-----------ee-eeecC
Confidence 76 999999998542 234444555430 00 22 23469
Q ss_pred CCCCEEEEEcCCCcEEEcc
Q 011970 455 EERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 455 pDg~~LaSgs~DgtVklWd 473 (474)
||++.|+||+.|+.+.+|.
T Consensus 327 pd~~~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 327 PDDCSLLSGSSDEQAYIWV 345 (720)
T ss_pred CCCceEeccCCCcceeeee
Confidence 9999999999999999995
No 166
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=2.3e-16 Score=166.37 Aligned_cols=199 Identities=17% Similarity=0.158 Sum_probs=152.2
Q ss_pred CcEEEEEEcC-CceEEEEecCCCCccEEEEecCC--------CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEE
Q 011970 227 KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIED--------GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQI 297 (474)
Q Consensus 227 ~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~t--------G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkI 297 (474)
+-|+..+|.| ...|+++ +.|++||||+++. -+.+.+|.+|.++|.+|+.. ..++.+.+++.|++|+.
T Consensus 295 d~ir~l~~~~sep~lit~---sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~-~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 295 DCIRALAFHPSEPVLITA---SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-SNGEHCYSGGIDGTIRC 370 (577)
T ss_pred hhhhhhhcCCCCCeEEEe---ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec-CCceEEEeeccCceeee
Confidence 4678888887 5566665 6789999999932 35678999999999999975 56889999999999999
Q ss_pred EECCCC----------ceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEecc---CCC---------
Q 011970 298 LDVRNA----------ELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFED---HLL--------- 354 (474)
Q Consensus 298 WDv~tg----------~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~g---H~~--------- 354 (474)
|++--. .+..++.||++.||.+++|+..+.|++.+ |||+++|+..++...+|.. |..
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss 450 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSS 450 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccc
Confidence 955421 24567899999999999999999999998 9999999975332222221 100
Q ss_pred -----------------------------------CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 355 -----------------------------------WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 355 -----------------------------------~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
....+.++-|...|.+.+.++ +.+|++|++.|..
T Consensus 451 ~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~-----------~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 451 RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFT-----------AHEDRSIRFFDNK 519 (577)
T ss_pred hhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEe-----------cccCCceeccccc
Confidence 000012334444444444444 4459999999999
Q ss_pred CCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 400 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 400 tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
+|+.++...+|-. .|+++++.|+|-+|+||+.|+.|++|.+
T Consensus 520 ~~~~l~s~~a~~~----------------------------------svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 520 TGKILHSMVAHKD----------------------------------SVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred ccccchheeeccc----------------------------------eecceeecCCCceEEeecCCceeehhhc
Confidence 9999999888875 8999999999999999999999999975
No 167
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.70 E-value=1.3e-15 Score=150.73 Aligned_cols=266 Identities=14% Similarity=0.095 Sum_probs=187.9
Q ss_pred CCCeEEeeec--cccceeeEeecCCCceEEEEEEeeCCCEE-EEEEeecCCCcccee-eeEEEEeEeccCCCC-Cccc--
Q 011970 106 HSGVCAAFSR--ETNRRICFLNVSPDEVIRSLFYNKNNDSL-ITVSVYASDNFSSLK-CRSTKIEYIRRGKPD-SGFA-- 178 (474)
Q Consensus 106 ~dgtiklW~~--~tg~~l~~l~g~~~~~i~sv~fspdg~~L-is~S~~~s~d~s~Lk-~~~~~iw~i~~G~~~-~~~~-- 178 (474)
.|..|-+-.+ +.+..++..=.+|.+-||.|+-+|..+.| +|+-. +++..+ ...+-||.|+...-- ...+
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn----~~s~s~vl~~aaiw~ipe~~~~S~~~tlE 113 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYN----DTSDSGVLTGAAIWQIPEPLGQSNSSTLE 113 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEe----ccCCCcceeeEEEEecccccCccccchhh
Confidence 3444544333 33444554334677889999999998865 44332 222231 234568998543321 1111
Q ss_pred ---eeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE-EEEEc-------CCcEEEEEEcC---CceEEEEe
Q 011970 179 ---LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSIS-------DKHVQEIKISP---GIMLLIFN 244 (474)
Q Consensus 179 ---lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~-l~tl~-------~~~V~~vafSp---g~~la~~s 244 (474)
....++++.+..|+|- ||+..||+-. |..|-||+++.+.. ...+. .....+=++|| |.++++.+
T Consensus 114 ~v~~Ldteavg~i~cvew~-Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~ 191 (370)
T KOG1007|consen 114 CVASLDTEAVGKINCVEWE-PNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS 191 (370)
T ss_pred HhhcCCHHHhCceeeEEEc-CCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC
Confidence 1222446667799997 7999999876 88999999998775 33332 23566778887 77777753
Q ss_pred cCCCCccEEEEecCCCeEEEEEe-ecCcceeEEEEEecCCCeEEE-EeCCCcEEEEECCC-CceEEeccccCCceEEEEE
Q 011970 245 RSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRN-AELMEVSRTEFMTPSAFIF 321 (474)
Q Consensus 245 ~~s~D~tIkLWdi~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv~t-g~~~~~l~~h~~~v~sv~F 321 (474)
|.++.-||++|-.+...++ .|.+.|+.++|.| .-+.+|+ +++|+-|||||.+. ...++.+.+|..|||+|.|
T Consensus 192 ----d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNp-nkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 192 ----DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNP-NKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF 266 (370)
T ss_pred ----CCcEEEEEccchhhhcchhhhhcceeeeccCCC-CceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe
Confidence 6899999999988888887 6888999999985 3455554 68999999999986 5578889999999999999
Q ss_pred cC-CCcEEEEEc-CCcEEEEeCC------------------------------CcEEEEeccCCCCcCCCCeeEEEECCC
Q 011970 322 LY-ENQLFLTFR-NRTVAVWNFR------------------------------GELVTSFEDHLLWHPDCNTNNIYITSD 369 (474)
Q Consensus 322 sp-dg~llaS~s-D~tIklWd~~------------------------------G~ll~tl~gH~~~~~~~~v~svafSpD 369 (474)
.| ..||++|++ |..|-||... ...+++++.|.+. |..+++|.-
T Consensus 267 n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDS-----VY~~aWSsa 341 (370)
T KOG1007|consen 267 NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDS-----VYALAWSSA 341 (370)
T ss_pred cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccc-----eEEEeeccC
Confidence 97 467888988 9999999831 1134588889887 678888774
Q ss_pred -CCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 370 -QDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 370 -g~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
-=++||-|. ||.+-|-++
T Consensus 342 dPWiFASLSY-----------DGRviIs~V 360 (370)
T KOG1007|consen 342 DPWIFASLSY-----------DGRVIISSV 360 (370)
T ss_pred CCeeEEEecc-----------CceEEeecC
Confidence 445566554 998888776
No 168
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.5e-14 Score=151.07 Aligned_cols=206 Identities=12% Similarity=0.092 Sum_probs=136.5
Q ss_pred CCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCC
Q 011970 207 DSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 283 (474)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~ 283 (474)
..+|.+||...+ ..+.+. ...|.+.+|||++ .|+..+....+..|.+||+.+|+... +..+.+.+..++|+ |+|
T Consensus 183 ~~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~S-pDG 259 (433)
T PRK04922 183 RYALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFS-PDG 259 (433)
T ss_pred eEEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceEC-CCC
Confidence 357999998544 334443 4578999999854 56655433445579999999987643 33233445678887 678
Q ss_pred CeEEEE-eCCC--cEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc--CCc--EEEEeCC-CcEEEEeccCCCC
Q 011970 284 EKLLVK-QENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRT--VAVWNFR-GELVTSFEDHLLW 355 (474)
Q Consensus 284 ~~ll~~-~~D~--tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~t--IklWd~~-G~ll~tl~gH~~~ 355 (474)
.+|+.. +.++ .|.+||+.++++.+. ..|......++|+|||+.|+..+ ++. |-++|+. |+. +.+..+...
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~~l-t~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~ 337 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLTRL-TNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNY 337 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeEEC-ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCC
Confidence 888754 4444 699999999987654 44544556789999999888766 455 4455664 553 333222222
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccc
Q 011970 356 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 435 (474)
Q Consensus 356 ~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (474)
..+++|||||++|+..+. .+....|.+||+.+|+.. .|. +..
T Consensus 338 -----~~~~~~SpDG~~Ia~~~~--------~~~~~~I~v~d~~~g~~~-~Lt-~~~----------------------- 379 (433)
T PRK04922 338 -----NARASVSPDGKKIAMVHG--------SGGQYRIAVMDLSTGSVR-TLT-PGS----------------------- 379 (433)
T ss_pred -----ccCEEECCCCCEEEEEEC--------CCCceeEEEEECCCCCeE-ECC-CCC-----------------------
Confidence 246899999999997653 112347999999888754 443 221
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEEcCC
Q 011970 436 YIRSTVGEALEDITSLFYDEERNEIYTGNRH 466 (474)
Q Consensus 436 ~~~~~~~~~l~~V~slafSpDg~~LaSgs~D 466 (474)
...+..|+|||+.|+..+.+
T Consensus 380 -----------~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 380 -----------LDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred -----------CCCCceECCCCCEEEEEEec
Confidence 23457899999988776653
No 169
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=1.5e-14 Score=152.78 Aligned_cols=274 Identities=11% Similarity=0.093 Sum_probs=169.4
Q ss_pred eEEeeeccccceeeEe--ecCCCceEEEEEEe--------------eCCCEEEEEEeecCCCccceeeeEEEEeEeccCC
Q 011970 109 VCAAFSRETNRRICFL--NVSPDEVIRSLFYN--------------KNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 172 (474)
Q Consensus 109 tiklW~~~tg~~l~~l--~g~~~~~i~sv~fs--------------pdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~ 172 (474)
.++|||..+|+.|... .+ +.+..+.++.. ..+..|+-++..+..+ -...++.+||.. |.
T Consensus 120 ~~~l~d~~~~~~~~~~~~~~-~~~~~r~~ah~~~d~i~~~~tg~~g~f~~~ia~v~~~~~~~---~~~~~l~i~D~~-g~ 194 (433)
T PRK04922 120 EYELFDVFKGERLLGLRLTA-PASAMRQAAHQIADAIYEKITGVPGAFWTRIAYVTVSGAGG---AMRYALQVADSD-GY 194 (433)
T ss_pred EEEEEECCCCCEeeceEEEe-CHHHHHHHHHHHHHHHHHHHcCCCCcccceEEEEEEeCCCC---CceEEEEEECCC-CC
Confidence 6899999888876543 22 21222222100 1122344444322211 123578888864 43
Q ss_pred CCCccceeeeccccCceEEEEeCCCCeEEEEecCC---CcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc-eEEEEecCC
Q 011970 173 PDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSIS-DKHVQEIKISPGI-MLLIFNRSS 247 (474)
Q Consensus 173 ~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D---~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~-~la~~s~~s 247 (474)
... .+..+ -..+.+++|+ |||+.|++.+.+ ..|.+||+.+|+...... ...+.+++|||++ .++......
T Consensus 195 ~~~--~lt~~--~~~v~~p~wS-pDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~ 269 (433)
T PRK04922 195 NPQ--TILRS--AEPILSPAWS-PDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRD 269 (433)
T ss_pred Cce--EeecC--CCccccccCC-CCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCC
Confidence 211 23322 2234478998 799999998743 479999999988543221 3345688999854 555443333
Q ss_pred CCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe-CCCc--EEEEECCCCceEEeccccCCceEEEEEcCC
Q 011970 248 SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENEN--LQILDVRNAELMEVSRTEFMTPSAFIFLYE 324 (474)
Q Consensus 248 ~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~t--IkIWDv~tg~~~~~l~~h~~~v~sv~Fspd 324 (474)
+...|.+||+.+|++. .+..+......++|+ |++.+|+..+ .++. |.++|+.+++..+... +.......+||||
T Consensus 270 g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~s-pDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~-~g~~~~~~~~SpD 346 (433)
T PRK04922 270 GNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWA-PDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF-QGNYNARASVSPD 346 (433)
T ss_pred CCceEEEEECCCCCeE-ECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEEECCCCCeEEeec-CCCCccCEEECCC
Confidence 3446999999998864 455454455678887 6788888876 4555 5556777887654422 2223446889999
Q ss_pred CcEEEEEc-C-C--cEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 325 NQLFLTFR-N-R--TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 325 g~llaS~s-D-~--tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
|+.++..+ + + .|.+||+. |+.. .+... .+ ..+..|+|||++|+..+. .+....|.++|+
T Consensus 347 G~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~-~~-----~~~p~~spdG~~i~~~s~--------~~g~~~L~~~~~- 410 (433)
T PRK04922 347 GKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG-SL-----DESPSFAPNGSMVLYATR--------EGGRGVLAAVST- 410 (433)
T ss_pred CCEEEEEECCCCceeEEEEECCCCCeE-ECCCC-CC-----CCCceECCCCCEEEEEEe--------cCCceEEEEEEC-
Confidence 99998764 3 2 69999996 5544 55432 23 246789999999887764 122456888897
Q ss_pred CCeEEEEecCCC
Q 011970 400 TGKCLAKINATN 411 (474)
Q Consensus 400 tG~cl~tl~gH~ 411 (474)
+|...+.+..+.
T Consensus 411 ~g~~~~~l~~~~ 422 (433)
T PRK04922 411 DGRVRQRLVSAD 422 (433)
T ss_pred CCCceEEcccCC
Confidence 677677776554
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.68 E-value=3.3e-15 Score=159.83 Aligned_cols=267 Identities=13% Similarity=0.131 Sum_probs=199.4
Q ss_pred eEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcE
Q 011970 131 VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 210 (474)
Q Consensus 131 ~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~ti 210 (474)
.|+.|+|-|||..|+.+. ++ .+-|+|...|.+.++.+ .+ -.-+..|+++ .||+..|||+.|+.|
T Consensus 14 ci~d~afkPDGsqL~lAA----g~-------rlliyD~ndG~llqtLK--gH--KDtVycVAys-~dGkrFASG~aDK~V 77 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA----GS-------RLLVYDTSDGTLLQPLK--GH--KDTVYCVAYA-KDGKRFASGSADKSV 77 (1081)
T ss_pred chheeEECCCCceEEEec----CC-------EEEEEeCCCcccccccc--cc--cceEEEEEEc-cCCceeccCCCceeE
Confidence 699999999999998753 33 67899999999876433 33 3345599998 799999999999999
Q ss_pred EEeecCC-CeEEEEEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEE
Q 011970 211 KVFDLKN-YTMLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV 288 (474)
Q Consensus 211 KlWdl~t-g~~l~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~ 288 (474)
-||+-+- |.+.| -|++.|++..|.| ...||+.+- ...-+|+.++-.+.+.- -..++.+.+|. .||++++.
T Consensus 78 I~W~~klEG~LkY-SH~D~IQCMsFNP~~h~LasCsL----sdFglWS~~qK~V~K~k--ss~R~~~CsWt-nDGqylal 149 (1081)
T KOG1538|consen 78 IIWTSKLEGILKY-SHNDAIQCMSFNPITHQLASCSL----SDFGLWSPEQKSVSKHK--SSSRIICCSWT-NDGQYLAL 149 (1081)
T ss_pred EEecccccceeee-ccCCeeeEeecCchHHHhhhcch----hhccccChhhhhHHhhh--hheeEEEeeec-CCCcEEEE
Confidence 9998653 33333 3577899999999 777887643 24678997664433211 13567788886 56778888
Q ss_pred EeCCCcEEEEECCCCce---EEeccccCCceEEEEEcCCC-----cEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCC
Q 011970 289 KQENENLQILDVRNAEL---MEVSRTEFMTPSAFIFLYEN-----QLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDC 359 (474)
Q Consensus 289 ~~~D~tIkIWDv~tg~~---~~~l~~h~~~v~sv~Fspdg-----~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~ 359 (474)
|-.||||-|-| .+||. ++...|.+..||+++|+|.. ..++... .+|+..+.++|+.+..=. .....|-
T Consensus 150 G~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r-~L~FdP~- 226 (1081)
T KOG1538|consen 150 GMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDR-ALNFDPC- 226 (1081)
T ss_pred eccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccc-cCCCCch-
Confidence 88999999998 55553 34566788899999999853 4566666 778888888887664111 1122222
Q ss_pred CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccc
Q 011970 360 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS 439 (474)
Q Consensus 360 ~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (474)
.+..-|+|.++.-|+. |+-++++- ..|-.+.|+-....
T Consensus 227 ---CisYf~NGEy~LiGGs-----------dk~L~~fT-R~GvrLGTvg~~D~--------------------------- 264 (1081)
T KOG1538|consen 227 ---CISYFTNGEYILLGGS-----------DKQLSLFT-RDGVRLGTVGEQDS--------------------------- 264 (1081)
T ss_pred ---hheeccCCcEEEEccC-----------CCceEEEe-ecCeEEeeccccce---------------------------
Confidence 3556689999998754 99999997 57888888855332
Q ss_pred cccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 440 TVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 440 ~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
|||+|+..|+||..+-|-.||||..++
T Consensus 265 -------WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 265 -------WIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred -------eEEEEEEccCCceEEEEEccCeeehhh
Confidence 999999999999999999999998765
No 171
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=6.1e-15 Score=147.31 Aligned_cols=273 Identities=14% Similarity=0.113 Sum_probs=192.4
Q ss_pred EEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec
Q 011970 92 IEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR 169 (474)
Q Consensus 92 ~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~ 169 (474)
..+.|+ |++||.|..||.+-+||..|-..-+.|.+ |--+|.||.||+||..|.|+| .| +.+.+||+.
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsa-H~~pi~sl~WS~dgr~LltsS----~D------~si~lwDl~ 95 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSA-HVRPITSLCWSRDGRKLLTSS----RD------WSIKLWDLL 95 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhc-cccceeEEEecCCCCEeeeec----CC------ceeEEEecc
Confidence 334444 99999999999999999998776677775 889999999999999999976 55 899999999
Q ss_pred cCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe--EEEEEcC---CcEEE-EEEcC-CceEEE
Q 011970 170 RGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISD---KHVQE-IKISP-GIMLLI 242 (474)
Q Consensus 170 ~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~--~l~tl~~---~~V~~-vafSp-g~~la~ 242 (474)
.|.+++.+. |.. .++++.|.|.+-...+..-.+..-.|=++.+++ +|-.=.+ +.+.+ ..|.+ |..+++
T Consensus 96 ~gs~l~rir-f~s----pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIit 170 (405)
T KOG1273|consen 96 KGSPLKRIR-FDS----PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIIT 170 (405)
T ss_pred CCCceeEEE-ccC----ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEE
Confidence 999865432 332 244788876554443333344444444544422 1111111 11211 34665 777776
Q ss_pred EecCCCCccEEEEecCCCeEEEEEeecC-cceeEEEEEecCCCeEEEEeCCCcEEEEECCC----CceEEe-----ccc-
Q 011970 243 FNRSSSHVPLKILSIEDGTVLKVFYHLL-HRNKKVDFIEQFNEKLLVKQENENLQILDVRN----AELMEV-----SRT- 311 (474)
Q Consensus 243 ~s~~s~D~tIkLWdi~tG~~L~tl~~h~-~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t----g~~~~~-----l~~- 311 (474)
+.+ -+.+-+.|.+|-+|...|+--. ..++.+-|+ .-+..+++-..|.+||.++++. |+-.+. +..
T Consensus 171 Gts---KGkllv~~a~t~e~vas~rits~~~IK~I~~s-~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv 246 (405)
T KOG1273|consen 171 GTS---KGKLLVYDAETLECVASFRITSVQAIKQIIVS-RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV 246 (405)
T ss_pred ecC---cceEEEEecchheeeeeeeechheeeeEEEEe-ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH
Confidence 643 4789999999999999998544 678888886 5678888899999999999872 111111 110
Q ss_pred cCCce-EEEEEcCCCcEEEEEc--CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 011970 312 EFMTP-SAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 387 (474)
Q Consensus 312 h~~~v-~sv~Fspdg~llaS~s--D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~ 387 (474)
=+... ..+.||.||.++..++ -..+-||... |.+++.|+|..+-. .-.|.+.|=--.|+|-.
T Consensus 247 VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~----l~DV~whp~rp~i~si~---------- 312 (405)
T KOG1273|consen 247 VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEE----LLDVNWHPVRPIIASIA---------- 312 (405)
T ss_pred HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhh----eeecccccceeeeeecc----------
Confidence 00112 2578999999998887 6689999996 99999999887421 45677888878888753
Q ss_pred CCCCeEEEEeCCC
Q 011970 388 GSAGSINVSSILT 400 (474)
Q Consensus 388 s~DgtIklWdi~t 400 (474)
.|+|.||...+
T Consensus 313 --sg~v~iw~~~~ 323 (405)
T KOG1273|consen 313 --SGVVYIWAVVQ 323 (405)
T ss_pred --CCceEEEEeec
Confidence 69999998643
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.67 E-value=3.4e-15 Score=149.68 Aligned_cols=287 Identities=13% Similarity=0.117 Sum_probs=196.5
Q ss_pred cccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecC----CCceEEEEEEeeCCC---
Q 011970 70 DTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVS----PDEVIRSLFYNKNND--- 142 (474)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~----~~~~i~sv~fspdg~--- 142 (474)
+.|..|.+.++|++++-.+. ..+++.+-...+.+++..-.--++-|+-+ |+|..+.++++-|-.
T Consensus 35 ed~~~~I~gv~fN~~~~~~e---------~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~ 105 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDE---------PQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGN 105 (385)
T ss_pred ccCCCccceeeeehhcCCCC---------CceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCC
Confidence 56777888888888855544 23344444556666664421123333322 667888888875532
Q ss_pred -EEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEE
Q 011970 143 -SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML 221 (474)
Q Consensus 143 -~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l 221 (474)
.||.++ .. .-|+|-|+..+++.+. +-.+ -..+..+.|.|.+-++|.|+|.|.+||+||+++..|+
T Consensus 106 p~la~~G----~~------GvIrVid~~~~~~~~~--~~gh--G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv 171 (385)
T KOG1034|consen 106 PFLAAGG----YL------GVIRVIDVVSGQCSKN--YRGH--GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV 171 (385)
T ss_pred eeEEeec----ce------eEEEEEecchhhhccc--eecc--CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE
Confidence 466543 33 6899999999998553 3333 3445578998777789999999999999999999999
Q ss_pred EEEc-----CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEE-------------------------E---e
Q 011970 222 YSIS-----DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV-------------------------F---Y 267 (474)
Q Consensus 222 ~tl~-----~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~t-------------------------l---~ 267 (474)
..+- .+.|.+|.||+ |..+|++ +.|.+||+|++..-+.-.. | .
T Consensus 172 ~VfGG~egHrdeVLSvD~~~~gd~i~Sc---GmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~d 248 (385)
T KOG1034|consen 172 AVFGGVEGHRDEVLSVDFSLDGDRIASC---GMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTD 248 (385)
T ss_pred EEecccccccCcEEEEEEcCCCCeeecc---CCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccc
Confidence 8874 46899999996 6777654 7899999999974221111 1 0
Q ss_pred ecCcceeEEEEEecCCCeEEEEeCCCcEEEEEC-CCCce---------EEeccccC----CceE--EEEEcCCCcEEEEE
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDV-RNAEL---------MEVSRTEF----MTPS--AFIFLYENQLFLTF 331 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv-~tg~~---------~~~l~~h~----~~v~--sv~Fspdg~llaS~ 331 (474)
-|...|..|.| +|+.+|++|-++.|..|-. +=++- -.+.-++. -.+| .++|.|-++.||.+
T Consensus 249 iHrnyVDCvrw---~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~g 325 (385)
T KOG1034|consen 249 IHRNYVDCVRW---FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALG 325 (385)
T ss_pred cccchHHHHHH---HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhc
Confidence 13333344443 3688999998889999976 21221 11212222 2344 45667889999999
Q ss_pred c-CCcEEEEeCC-Cc--EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 332 R-NRTVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 332 s-D~tIklWd~~-G~--ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
. -|+|-+||++ -+ ...|+..+... ..|+..+||.||.+|+-.|. |++|-=||..
T Consensus 326 nq~g~v~vwdL~~~ep~~~ttl~~s~~~---~tVRQ~sfS~dgs~lv~vcd-----------d~~Vwrwdrv 383 (385)
T KOG1034|consen 326 NQSGKVYVWDLDNNEPPKCTTLTHSKSG---STVRQTSFSRDGSILVLVCD-----------DGTVWRWDRV 383 (385)
T ss_pred cCCCcEEEEECCCCCCccCceEEecccc---ceeeeeeecccCcEEEEEeC-----------CCcEEEEEee
Confidence 9 9999999995 33 34456554432 35899999999999999987 9999999853
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.67 E-value=2.3e-15 Score=148.96 Aligned_cols=261 Identities=13% Similarity=0.145 Sum_probs=184.0
Q ss_pred ceeecccCCCCCcccccccccccccEEEEEee--ccEEEEeeCC--------CeEEeeeccc---------cceeeEeec
Q 011970 66 VEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA--RDIVFALAHS--------GVCAAFSRET---------NRRICFLNV 126 (474)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s--~~~las~s~d--------gtiklW~~~t---------g~~l~~l~g 126 (474)
|-..-.+++........-|+-+-..|+.|+.+ .+.|++..+. --+.||++.. =++++.|.-
T Consensus 41 qVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldt 120 (370)
T KOG1007|consen 41 QVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDT 120 (370)
T ss_pred eeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCH
Confidence 33344455555555555566678889999988 4444443333 2467899864 235666764
Q ss_pred CCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC-Cccceeee-ccccCceEEEEeC-CCCeEEEE
Q 011970 127 SPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD-SGFALFES-ESLKWPGFVEFDD-VNGKVLTY 203 (474)
Q Consensus 127 ~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~-~~~~lf~~-~~~~~~~~V~Fs~-~nGk~LaS 203 (474)
.+-+.|.+|-|-||++.||+. +| ..+-+|++..+.-. +..+.-.. ++.-.-.+-++|| .||..+++
T Consensus 121 eavg~i~cvew~Pns~klasm-----~d------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t 189 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASM-----DD------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT 189 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEe-----cc------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE
Confidence 444679999999999999984 24 58889999777642 11111110 1111111345665 58888886
Q ss_pred ecCCCcEEEeecCCCeEEEEEcC---CcEEEEEEcCC--ceEEEEecCCCCccEEEEecCC-CeEEEEEeecCcceeEEE
Q 011970 204 SAQDSIYKVFDLKNYTMLYSISD---KHVQEIKISPG--IMLLIFNRSSSHVPLKILSIED-GTVLKVFYHLLHRNKKVD 277 (474)
Q Consensus 204 ~s~D~tiKlWdl~tg~~l~tl~~---~~V~~vafSpg--~~la~~s~~s~D~tIkLWdi~t-G~~L~tl~~h~~~v~~V~ 277 (474)
. .|+|++.||+.|-++.+.+.+ ..|.++.|.|+ -.|++ +++|+.|||||.+. -..++++.+|.|+||.|.
T Consensus 190 t-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt---~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR 265 (370)
T KOG1007|consen 190 T-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVT---CGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR 265 (370)
T ss_pred e-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEE---cCCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence 5 599999999999888888864 46999999984 34444 47799999999874 457899999999999999
Q ss_pred EEecCCCeEEEEeCCCcEEEEECCCCc-----------------------------eEEeccccCCceEEEEEc-CCCcE
Q 011970 278 FIEQFNEKLLVKQENENLQILDVRNAE-----------------------------LMEVSRTEFMTPSAFIFL-YENQL 327 (474)
Q Consensus 278 F~~~~~~~ll~~~~D~tIkIWDv~tg~-----------------------------~~~~l~~h~~~v~sv~Fs-pdg~l 327 (474)
|.+..++.+|+++.|..|-||...+-. .+++...|.+.|++++|| .|==+
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi 345 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI 345 (370)
T ss_pred ecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence 998778888889999999999765311 234567788999999987 56667
Q ss_pred EEEEc-CCcEEEEeC
Q 011970 328 FLTFR-NRTVAVWNF 341 (474)
Q Consensus 328 laS~s-D~tIklWd~ 341 (474)
|||-| ||.+-|=.+
T Consensus 346 FASLSYDGRviIs~V 360 (370)
T KOG1007|consen 346 FASLSYDGRVIISSV 360 (370)
T ss_pred EEEeccCceEEeecC
Confidence 77778 887766554
No 174
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=2.6e-14 Score=151.06 Aligned_cols=227 Identities=15% Similarity=0.176 Sum_probs=150.3
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEec---CCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA---QDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP 236 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s---~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSp 236 (474)
..+.++|...+.. ..+... -..+.+.+|| |||+.||+.+ .+..+.+||+.+|+...... ...+.+++|||
T Consensus 179 ~~l~~~d~dg~~~---~~lt~~--~~~~~~p~wS-PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP 252 (429)
T PRK03629 179 YELRVSDYDGYNQ---FVVHRS--PQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP 252 (429)
T ss_pred eeEEEEcCCCCCC---EEeecC--CCceeeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC
Confidence 4666777543332 122222 2234578998 7999999865 34679999999987433221 23456799998
Q ss_pred Cc-eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeC-CCcEEEE--ECCCCceEEecccc
Q 011970 237 GI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE-NENLQIL--DVRNAELMEVSRTE 312 (474)
Q Consensus 237 g~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~-D~tIkIW--Dv~tg~~~~~l~~h 312 (474)
++ .|+......++..|.+||+++|++.+...+ ...+..+.|+ |++.+|+..+. ++..+|| |+.+++..+. ..+
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~~~~~~~~wS-PDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l-t~~ 329 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-RSNNTEPTWF-PDSQNLAYTSDQAGRPQVYKVNINGGAPQRI-TWE 329 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC-CCCcCceEEC-CCCCEEEEEeCCCCCceEEEEECCCCCeEEe-ecC
Confidence 55 455443333344699999999887554433 3456788887 67888887764 4566666 7777766544 223
Q ss_pred CCceEEEEEcCCCcEEEEEc--C--CcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccccc
Q 011970 313 FMTPSAFIFLYENQLFLTFR--N--RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWME 387 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS~s--D--~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~ 387 (474)
........|||||+.++..+ + ..|.+||++ |+ .+.|..... ..+..|||||++|+..+. .
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-~~~Lt~~~~------~~~p~~SpDG~~i~~~s~--------~ 394 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-VQVLTDTFL------DETPSIAPNGTMVIYSSS--------Q 394 (429)
T ss_pred CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-eEEeCCCCC------CCCceECCCCCEEEEEEc--------C
Confidence 33455788999999988765 3 358889996 55 445543211 246789999999998875 1
Q ss_pred CCCCeEEEEeCCCCeEEEEecCCCC
Q 011970 388 GSAGSINVSSILTGKCLAKINATNC 412 (474)
Q Consensus 388 s~DgtIklWdi~tG~cl~tl~gH~~ 412 (474)
+....+.++++ +|+..+.|.+|..
T Consensus 395 ~~~~~l~~~~~-~G~~~~~l~~~~~ 418 (429)
T PRK03629 395 GMGSVLNLVST-DGRFKARLPATDG 418 (429)
T ss_pred CCceEEEEEEC-CCCCeEECccCCC
Confidence 11234788897 7998999998875
No 175
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.66 E-value=3.5e-16 Score=170.42 Aligned_cols=276 Identities=14% Similarity=0.109 Sum_probs=201.4
Q ss_pred cccccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeee
Q 011970 84 FLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCR 161 (474)
Q Consensus 84 ~~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~ 161 (474)
-|-|++.|+.++|. |-+|++||+|..+|+|.++|+.|+.++.| |..-|+.++-+.++-++|++| .| .
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG-hs~ditdlavs~~n~~iaaaS----~D------~ 254 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG-HSGDITDLAVSSNNTMIAAAS----ND------K 254 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC-Cccccchhccchhhhhhhhcc----cC------c
Confidence 35588999999998 99999999999999999999999999998 778899999999999888865 66 7
Q ss_pred EEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-------CCcEEEEEE
Q 011970 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-------DKHVQEIKI 234 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-------~~~V~~vaf 234 (474)
.|++|-+++|.+.. .|+++ .+.|.+++|+| - ++++.|||+++||.. -..+...+ ++.|-++-|
T Consensus 255 vIrvWrl~~~~pvs--vLrgh--tgavtaiafsP-~----~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~ 324 (1113)
T KOG0644|consen 255 VIRVWRLPDGAPVS--VLRGH--TGAVTAIAFSP-R----ASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILF 324 (1113)
T ss_pred eEEEEecCCCchHH--HHhcc--ccceeeeccCc-c----ccCCCCCceEecccc-ccccccCCCCCCcccccceeeeec
Confidence 89999999999855 35665 57778999995 2 378899999999965 12111111 245667777
Q ss_pred cC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccC
Q 011970 235 SP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF 313 (474)
Q Consensus 235 Sp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~ 313 (474)
-. +...++. +.|.+...|.++- +..+.....=|.++...+...+++-.+.-+.+|++.+|.+.+.+.+|.
T Consensus 325 ~~~~~~f~Tg---s~d~ea~n~e~~~------l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghs 395 (1113)
T KOG0644|consen 325 ENNGDRFLTG---SRDGEARNHEFEQ------LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHS 395 (1113)
T ss_pred cccccccccc---cCCcccccchhhH------hhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccc
Confidence 74 5555554 5566776665432 111111112222222222344455688999999999999999999999
Q ss_pred CceEEEEEcCCCcEEE-EEc-CCcEEEEeC-CCcEEE-EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 011970 314 MTPSAFIFLYENQLFL-TFR-NRTVAVWNF-RGELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 389 (474)
Q Consensus 314 ~~v~sv~Fspdg~lla-S~s-D~tIklWd~-~G~ll~-tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~ 389 (474)
+.++.+.|.|-+..++ ++. ||.+-|||+ .|..++ -+.+|... -.-+||+||+.++..-.
T Consensus 396 d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl------~d~kFSqdgts~~lsd~----------- 458 (1113)
T KOG0644|consen 396 DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKL------VDGKFSQDGTSIALSDD----------- 458 (1113)
T ss_pred cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccccee------eccccCCCCceEecCCC-----------
Confidence 9999999998665554 556 999999999 587654 45677653 46789999999986322
Q ss_pred CCeEEEEeCCCCeEEEE
Q 011970 390 AGSINVSSILTGKCLAK 406 (474)
Q Consensus 390 DgtIklWdi~tG~cl~t 406 (474)
-|.+.|-..-.|+....
T Consensus 459 hgql~i~g~gqs~s~k~ 475 (1113)
T KOG0644|consen 459 HGQLYILGTGQSKSQKK 475 (1113)
T ss_pred CCceEEeccCCCccccc
Confidence 57777776544444443
No 176
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.66 E-value=3.7e-15 Score=151.46 Aligned_cols=200 Identities=11% Similarity=0.111 Sum_probs=152.3
Q ss_pred ccccEEEEEee----ccEEEEeeCCCeEEeeecc----------------ccceeeEeecCCCceEEEEEEeeC--CCEE
Q 011970 87 KRTKVIEIVAA----RDIVFALAHSGVCAAFSRE----------------TNRRICFLNVSPDEVIRSLFYNKN--NDSL 144 (474)
Q Consensus 87 ~~~~V~~i~~s----~~~las~s~dgtiklW~~~----------------tg~~l~~l~g~~~~~i~sv~fspd--g~~L 144 (474)
|..-|.-|..+ .-+.|+=|+.|-|++|++. ..+.|.+++| |..-=+.|.|||- |. |
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~g-hk~EGy~LdWSp~~~g~-L 227 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNG-HKGEGYGLDWSPIKTGR-L 227 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecc-cCccceeeecccccccc-c
Confidence 55555555555 4567788999999999975 2456889998 4455799999992 32 2
Q ss_pred EEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCC---eEE
Q 011970 145 ITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY---TML 221 (474)
Q Consensus 145 is~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg---~~l 221 (474)
+| .| ....|++|...+|..--...-|.. |...|..+.+||....++||||-|++|||||+..+ .|+
T Consensus 228 ls------GD----c~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 228 LS------GD----CVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred cc------Cc----cccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee
Confidence 22 22 336889999988876222122332 56677788999766679999999999999999988 455
Q ss_pred EE-EcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCC---CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEE
Q 011970 222 YS-ISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIED---GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQ 296 (474)
Q Consensus 222 ~t-l~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~t---G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIk 296 (474)
.+ -+...|.-|.|+. -.+||++ ++|++++|||+++ |+.+.+|+.|.++|.+|.|+|.+...++++++|++|-
T Consensus 297 ~~kAh~sDVNVISWnr~~~lLasG---~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qit 373 (440)
T KOG0302|consen 297 STKAHNSDVNVISWNRREPLLASG---GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQIT 373 (440)
T ss_pred EeeccCCceeeEEccCCcceeeec---CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEE
Confidence 44 3456899999994 3355554 6789999999875 7888999999999999999988888999999999999
Q ss_pred EEECCC
Q 011970 297 ILDVRN 302 (474)
Q Consensus 297 IWDv~t 302 (474)
|||+.-
T Consensus 374 iWDlsv 379 (440)
T KOG0302|consen 374 IWDLSV 379 (440)
T ss_pred EEEeec
Confidence 999864
No 177
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.65 E-value=2.1e-14 Score=147.09 Aligned_cols=276 Identities=15% Similarity=0.204 Sum_probs=187.8
Q ss_pred CceEEEEEEeeCCC-EEEEEEeecCCCccceeeeEEEEeEeccCCCCCc--cceeee---ccccCceEEEEeCCCCeEEE
Q 011970 129 DEVIRSLFYNKNND-SLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG--FALFES---ESLKWPGFVEFDDVNGKVLT 202 (474)
Q Consensus 129 ~~~i~sv~fspdg~-~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~--~~lf~~---~~~~~~~~V~Fs~~nGk~La 202 (474)
.+.|.++.|.++.. .|+|++ -| ..++||.+.+++...+ ...|.. .|...+..|.|+ |+|.+||
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G----~D------~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~-p~gelLA 81 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAG----GD------KDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFS-PDGELLA 81 (434)
T ss_pred CCceEEEEeccCcccceeccc----Cc------cceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEc-CCcCeee
Confidence 37799999999987 888864 44 6899999988887553 111221 245667789998 8999999
Q ss_pred EecCCCcEEEeecC--------C--------CeEEEEE--cCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEE
Q 011970 203 YSAQDSIYKVFDLK--------N--------YTMLYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (474)
Q Consensus 203 S~s~D~tiKlWdl~--------t--------g~~l~tl--~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~ 264 (474)
||+.+++|-||-.. + ..-.+.+ +.+.|.+++++|+++++.++ +.|.++++||+..|++++
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~--s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSG--SVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeee--eccceEEEEEeccceeEe
Confidence 99999999999866 2 1112233 34689999999988887774 669999999999999999
Q ss_pred EEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceE---------------------EeccccC--CceEEEEE
Q 011970 265 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM---------------------EVSRTEF--MTPSAFIF 321 (474)
Q Consensus 265 tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~---------------------~~l~~h~--~~v~sv~F 321 (474)
.+..|.+-+..|++- |-++++++.+.|...+...+.....+ +.+...+ ..-....|
T Consensus 160 ~~~dh~~yvqgvawD-pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWD-PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred eccccccccceeecc-hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 999999999999986 56888888888876665554432211 1111111 12234678
Q ss_pred cCCCcEEEEEc-----CCcEEEEeCCCcEEEEeccCCCCcCCC-------CeeEEEECC------------------CCC
Q 011970 322 LYENQLFLTFR-----NRTVAVWNFRGELVTSFEDHLLWHPDC-------NTNNIYITS------------------DQD 371 (474)
Q Consensus 322 spdg~llaS~s-----D~tIklWd~~G~ll~tl~gH~~~~~~~-------~v~svafSp------------------Dg~ 371 (474)
+|||.+|++.+ .+.+.. ++...|.++...-|.| .+-.+.|+| =+-
T Consensus 239 TPdG~llvtPag~~~~g~~~~~-----n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrl 313 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFR-----NTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRL 313 (434)
T ss_pred CCCCcEEEcccceeeeCCceee-----ceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccce
Confidence 99999999863 344421 1122333332211111 133455554 233
Q ss_pred EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC-CCCCCCCccccCCCCCCccccccccccccccccccccCEEE
Q 011970 372 LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITS 450 (474)
Q Consensus 372 ~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s 450 (474)
..|.++ -+.|-|+|.++-+.+..... |=. .|+.
T Consensus 314 vfaiAt------------~~svyvydtq~~~P~~~v~nihy~----------------------------------~iTD 347 (434)
T KOG1009|consen 314 VFAIAT------------KNSVYVYDTQTLEPLAVVDNIHYS----------------------------------AITD 347 (434)
T ss_pred EEEEee------------cceEEEeccccccceEEEeeeeee----------------------------------eecc
Confidence 444444 47899999766555554433 321 7999
Q ss_pred EEEcCCCCEEEEEcCCCcE
Q 011970 451 LFYDEERNEIYTGNRHGLV 469 (474)
Q Consensus 451 lafSpDg~~LaSgs~DgtV 469 (474)
++||+||..|+-.|.||-.
T Consensus 348 iaws~dg~~l~vSS~DGyC 366 (434)
T KOG1009|consen 348 IAWSDDGSVLLVSSTDGFC 366 (434)
T ss_pred eeecCCCcEEEEeccCCce
Confidence 9999999999999999954
No 178
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=8.8e-14 Score=141.24 Aligned_cols=227 Identities=17% Similarity=0.253 Sum_probs=172.7
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeE-EEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEe
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~-l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~ 267 (474)
+..|. .|+..|+-|+.|| +|++....-.. -.... +..|-+.-||-. .+|..+.. .-+.+|+.+++.++.+=.+.
T Consensus 10 ~~~~N-qd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS-LvaiV~~~-qpr~Lkv~~~Kk~~~ICe~~ 85 (391)
T KOG2110|consen 10 FIGFN-QDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS-LVAIVSIK-QPRKLKVVHFKKKTTICEIF 85 (391)
T ss_pred eeeec-cceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc-eeEEEecC-CCceEEEEEcccCceEEEEe
Confidence 45576 6888999999998 89998875433 22222 346788888854 34444321 11349999988776554333
Q ss_pred ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccc---cCCceEEEEEcCCCcEEEEEc---CCcEEEEeC
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT---EFMTPSAFIFLYENQLFLTFR---NRTVAVWNF 341 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~---h~~~v~sv~Fspdg~llaS~s---D~tIklWd~ 341 (474)
. .+.+.+|.+.- ++|++.=++. |.|+|+++-+++++... +...+-++.+++++-++|--+ .|.|.|||.
T Consensus 86 f-pt~IL~VrmNr---~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 86 F-PTSILAVRMNR---KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred c-CCceEEEEEcc---ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 2 26788999863 5676664443 99999999999987543 555677777778888888643 789999999
Q ss_pred -CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe-EEEEeCCCCeEEEEecCCCCCCCCccc
Q 011970 342 -RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS-INVSSILTGKCLAKINATNCSPKVDDE 419 (474)
Q Consensus 342 -~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dgt-IklWdi~tG~cl~tl~gH~~~~~~~~~ 419 (474)
+-+.+.+++.|.+. +-.++|+|||.+||++|. .|| ||+..+.+|+.+..|+--.. |
T Consensus 161 ~nl~~v~~I~aH~~~-----lAalafs~~G~llATASe-----------KGTVIRVf~v~~G~kl~eFRRG~~------~ 218 (391)
T KOG2110|consen 161 INLQPVNTINAHKGP-----LAALAFSPDGTLLATASE-----------KGTVIRVFSVPEGQKLYEFRRGTY------P 218 (391)
T ss_pred ccceeeeEEEecCCc-----eeEEEECCCCCEEEEecc-----------CceEEEEEEcCCccEeeeeeCCce------e
Confidence 58889999999987 689999999999999986 666 79999999999999865332 2
Q ss_pred cCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 420 LGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
. .|.+|+||||+++|+..|.-+|||+..
T Consensus 219 ~--------------------------~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 219 V--------------------------SIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred e--------------------------EEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 1 799999999999999999999999975
No 179
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.64 E-value=1.5e-15 Score=154.95 Aligned_cols=159 Identities=13% Similarity=0.184 Sum_probs=128.0
Q ss_pred EEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc-------eEEeccccCCceEEEEEcCC-CcEEEEEc-CCc
Q 011970 265 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-------LMEVSRTEFMTPSAFIFLYE-NQLFLTFR-NRT 335 (474)
Q Consensus 265 tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~-------~~~~l~~h~~~v~sv~Fspd-g~llaS~s-D~t 335 (474)
.+.||...|..++|.|..+.-|+++|+|.+|+||++-.+- .+..|.||+..|--|++.|- .+.|+|++ |.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3568999999999985444555567899999999987543 35568999999999999974 44566666 999
Q ss_pred EEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCC
Q 011970 336 VAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSP 414 (474)
Q Consensus 336 IklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~ 414 (474)
|+|||+ +|+-+-++. |.+- |.++.|+.||.+|++.|+ |..|||||..+|+.++.-.+|.+.
T Consensus 156 v~iWnv~tgeali~l~-hpd~-----i~S~sfn~dGs~l~Ttck-----------DKkvRv~dpr~~~~v~e~~~heG~- 217 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDM-----VYSMSFNRDGSLLCTTCK-----------DKKVRVIDPRRGTVVSEGVAHEGA- 217 (472)
T ss_pred EEEEeccCCceeeecC-CCCe-----EEEEEeccCCceeeeecc-----------cceeEEEcCCCCcEeeecccccCC-
Confidence 999999 599888887 8876 799999999999999998 999999999999999999999861
Q ss_pred CCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEE---cCCCcEEEcc
Q 011970 415 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTG---NRHGLVHVWS 473 (474)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSg---s~DgtVklWd 473 (474)
.=.-+.|--+|..+-|| ..+..+-|||
T Consensus 218 --------------------------------k~~Raifl~~g~i~tTGfsr~seRq~aLwd 247 (472)
T KOG0303|consen 218 --------------------------------KPARAIFLASGKIFTTGFSRMSERQIALWD 247 (472)
T ss_pred --------------------------------CcceeEEeccCceeeeccccccccceeccC
Confidence 11235667788844443 2577888997
No 180
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.9e-15 Score=169.45 Aligned_cols=241 Identities=10% Similarity=0.117 Sum_probs=185.1
Q ss_pred cEEEEEee--cc----EEEEeeCCCeEEeeeccc---c---ceeeEeecCCCceEEEEEEeeCCC-EEEEEEeecCCCcc
Q 011970 90 KVIEIVAA--RD----IVFALAHSGVCAAFSRET---N---RRICFLNVSPDEVIRSLFYNKNND-SLITVSVYASDNFS 156 (474)
Q Consensus 90 ~V~~i~~s--~~----~las~s~dgtiklW~~~t---g---~~l~~l~g~~~~~i~sv~fspdg~-~Lis~S~~~s~d~s 156 (474)
+-.+++.+ ++ +||.|.+||.|-|||... | ..|.+.+. |.+.|+.|-|||+.. .||+ |.+|
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~-h~G~V~gLDfN~~q~nlLAS----Ga~~-- 138 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK-HTGPVLGLDFNPFQGNLLAS----GADD-- 138 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc-cCCceeeeeccccCCceeec----cCCC--
Confidence 44666666 44 499999999999999664 3 35677776 779999999999976 8887 4466
Q ss_pred ceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC----CcEEEE
Q 011970 157 SLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEI 232 (474)
Q Consensus 157 ~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~----~~V~~v 232 (474)
..|-|||+..-+.-.+.. ......-|-+|++.-....+|||++.++.+-||||+.-+.+..+.+ -.+..|
T Consensus 139 ----geI~iWDlnn~~tP~~~~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l 212 (1049)
T KOG0307|consen 139 ----GEILIWDLNKPETPFTPG--SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVL 212 (1049)
T ss_pred ----CcEEEeccCCcCCCCCCC--CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeee
Confidence 799999986643211100 1101122336777555567899999999999999987776665542 347899
Q ss_pred EEcCC--ceEEEEecCCCCccEEEEecCC-CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec
Q 011970 233 KISPG--IMLLIFNRSSSHVPLKILSIED-GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS 309 (474)
Q Consensus 233 afSpg--~~la~~s~~s~D~tIkLWdi~t-G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l 309 (474)
+|+|+ ..+++++.+...-.|++||++. -..+++|++|...+.++++.++|...||+++.|+.|-+||..|||.+..+
T Consensus 213 ~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~ 292 (1049)
T KOG0307|consen 213 AWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL 292 (1049)
T ss_pred eeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec
Confidence 99983 2444443333334699999764 35789999999999999999888888999999999999999999999988
Q ss_pred cccCCceEEEEEcCCCc-EEEEEc-CCcEEEEeCCC
Q 011970 310 RTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFRG 343 (474)
Q Consensus 310 ~~h~~~v~sv~Fspdg~-llaS~s-D~tIklWd~~G 343 (474)
....+|+..|.|.|..- +|+.++ ||.|.|+.++|
T Consensus 293 p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 293 PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred CCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 88889999999999887 788888 99999999963
No 181
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=7.7e-14 Score=142.51 Aligned_cols=287 Identities=13% Similarity=0.157 Sum_probs=208.2
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEe------ccCCCCCccceeeeccccCceEEEEeCC
Q 011970 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI------RRGKPDSGFALFESESLKWPGFVEFDDV 196 (474)
Q Consensus 123 ~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i------~~G~~~~~~~lf~~~~~~~~~~V~Fs~~ 196 (474)
-|.+ |.+-|.+|-||-||+.|++ |+|| +.+++|.+ +..|+++ +.++-|..-+.+++|+ .
T Consensus 51 D~~~-H~GCiNAlqFS~N~~~L~S----GGDD------~~~~~W~~de~~~~k~~KPI~---~~~~~H~SNIF~L~F~-~ 115 (609)
T KOG4227|consen 51 DVRE-HTGCINALQFSHNDRFLAS----GGDD------MHGRVWNVDELMVRKTPKPIG---VMEHPHRSNIFSLEFD-L 115 (609)
T ss_pred hhhh-hccccceeeeccCCeEEee----cCCc------ceeeeechHHHHhhcCCCCce---eccCccccceEEEEEc-c
Confidence 4555 7899999999999999998 6699 89999998 3334433 5555455668899998 4
Q ss_pred CCeEEEEecCCCcEEEeecCCCeEEEEEcC----CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCe-EEEE--Eee
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT-VLKV--FYH 268 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~----~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~-~L~t--l~~ 268 (474)
....|-||..|++|-+-|+++-+-++.+.. ..|..+..+| +.+|++.+ .++-|-+||+...+ .+.- +..
T Consensus 116 ~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t---~~~~V~~~D~Rd~~~~~~~~~~AN 192 (609)
T KOG4227|consen 116 ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT---RAKLVSFIDNRDRQNPISLVLPAN 192 (609)
T ss_pred CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEe---cCceEEEEeccCCCCCCceeeecC
Confidence 667888999999999999999999998863 3699999998 88888774 46899999998765 2211 111
Q ss_pred cCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCce--EE-----eccccCCceEEEEEcCCCcEEEEEc-CCcEEEEe
Q 011970 269 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL--ME-----VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 340 (474)
Q Consensus 269 h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~--~~-----~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd 340 (474)
......++-|.|...-.||+.++-+-+-+||++-..- ++ -|..+...-.++.|+|.|..|++-. -..--++|
T Consensus 193 ~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D 272 (609)
T KOG4227|consen 193 SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFD 272 (609)
T ss_pred CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEee
Confidence 2234478889876667777789999999999886431 11 1222111112567999999999987 55666899
Q ss_pred CC-CcEEEEeccCC--CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-----C-----------
Q 011970 341 FR-GELVTSFEDHL--LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-----G----------- 401 (474)
Q Consensus 341 ~~-G~ll~tl~gH~--~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t-----G----------- 401 (474)
+. ..|-.--.+|. +...-|.+.+++|-.|-. ++|||. +=.|.||.+.- |
T Consensus 273 ~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD-----------~~~i~~WklP~~~ds~G~~~IG~~~~~~ 340 (609)
T KOG4227|consen 273 FISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSD-----------HWGIHIWKLPRANDSYGFTQIGHDEEEM 340 (609)
T ss_pred eecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCc-----------ccceEEEecCCCccccCccccCcchhhC
Confidence 85 44432222333 344445667788876654 788775 88899998742 1
Q ss_pred -------eEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 402 -------KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 402 -------~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
+.+..|+||.. .+..|-|+|-...|+|.+-.+.+|||.
T Consensus 341 ~~~~~i~~~~~VLrGHRS----------------------------------v~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 341 PSEIFIEKELTVLRGHRS----------------------------------VPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred chhheecceeEEEecccc----------------------------------cccceeecCCcceEeccchhhheeccc
Confidence 23445666664 678899999999999999999999995
No 182
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1.6e-13 Score=144.83 Aligned_cols=207 Identities=12% Similarity=0.055 Sum_probs=140.3
Q ss_pred CCcEEEeecCCCeEEE-EEcCCcEEEEEEcCC-ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCC
Q 011970 207 DSIYKVFDLKNYTMLY-SISDKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (474)
Q Consensus 207 D~tiKlWdl~tg~~l~-tl~~~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~ 284 (474)
...|.+||..++.... +-+...|.+.+|||+ ..|+..+...++..|.+||+++|+.. .+..+.+.+..++|+ |+|.
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~S-PDG~ 258 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFS-PDGR 258 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEEC-CCCC
Confidence 3478888875554322 223568999999985 45665544445678999999999764 344444567788887 6788
Q ss_pred eEEEE-eCCCc--EEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc--CC--cEEEEeCCCcEEEEeccCCCCcC
Q 011970 285 KLLVK-QENEN--LQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAVWNFRGELVTSFEDHLLWHP 357 (474)
Q Consensus 285 ~ll~~-~~D~t--IkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~--tIklWd~~G~ll~tl~gH~~~~~ 357 (474)
+|+.. +.|+. |.+||+.++++.+. ..+........|+|||+.++..+ ++ .|.+||++|..++.+..+...
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~L-t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~-- 335 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTRL-TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR-- 335 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEEc-cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc--
Confidence 88764 55655 66679999987654 44555566789999999888765 33 577778876555555444332
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccc
Q 011970 358 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 437 (474)
Q Consensus 358 ~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (474)
+....|||||++|+..+. .+.+..|.+||+. |+....+.. ..
T Consensus 336 ---~~~~~~SpdG~~ia~~~~--------~~~~~~i~~~d~~-~~~~~~lt~-~~------------------------- 377 (435)
T PRK05137 336 ---YSTPVWSPRGDLIAFTKQ--------GGGQFSIGVMKPD-GSGERILTS-GF------------------------- 377 (435)
T ss_pred ---ccCeEECCCCCEEEEEEc--------CCCceEEEEEECC-CCceEeccC-CC-------------------------
Confidence 356889999999997654 1224578899974 444444432 11
Q ss_pred cccccccccCEEEEEEcCCCCEEEEEcC
Q 011970 438 RSTVGEALEDITSLFYDEERNEIYTGNR 465 (474)
Q Consensus 438 ~~~~~~~l~~V~slafSpDg~~LaSgs~ 465 (474)
.+.++.|||||+.|+-.+.
T Consensus 378 ---------~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 378 ---------LVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred ---------CCCCCeECCCCCEEEEEEc
Confidence 3456899999999876554
No 183
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2.3e-15 Score=168.76 Aligned_cols=274 Identities=12% Similarity=0.156 Sum_probs=201.1
Q ss_pred ccEEEEeeCCCeEEeeecc--ccc----eeeEeecCCCceEEEEEEeeCCCE---EEEEEeecCCCccceeeeEEEEeEe
Q 011970 98 RDIVFALAHSGVCAAFSRE--TNR----RICFLNVSPDEVIRSLFYNKNNDS---LITVSVYASDNFSSLKCRSTKIEYI 168 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~--tg~----~l~~l~g~~~~~i~sv~fspdg~~---Lis~S~~~s~d~s~Lk~~~~~iw~i 168 (474)
+++=++-|.+.+..||.+. ++. ....++ .++..+.|+|.+.|.- ||.+ |.+| ..|-||+.
T Consensus 29 q~~D~sfst~~slEifeld~~~~~~dlk~~~s~~--s~~rF~kL~W~~~g~~~~GlIaG---G~ed------G~I~ly~p 97 (1049)
T KOG0307|consen 29 QQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ--SSNRFNKLAWGSYGSHSHGLIAG---GLED------GNIVLYDP 97 (1049)
T ss_pred hccccccccccccceeeecccCcccccccccccc--ccccceeeeecccCCCccceeec---cccC------CceEEecc
Confidence 5544555667777777644 222 333443 3467889999999987 3432 4577 89999996
Q ss_pred ccCCCCCccceeee--ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEE-c---CCcEEEEEEcC--CceE
Q 011970 169 RRGKPDSGFALFES--ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-S---DKHVQEIKISP--GIML 240 (474)
Q Consensus 169 ~~G~~~~~~~lf~~--~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl-~---~~~V~~vafSp--g~~l 240 (474)
..=.-+....+..+ .|.+.|..+.|.+--|.+||||+.||+|-|||+++-+.-++. . .+.|..|+++- ...|
T Consensus 98 ~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhIL 177 (1049)
T KOG0307|consen 98 ASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHIL 177 (1049)
T ss_pred hhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHh
Confidence 43111111122221 356778889998655669999999999999999986544444 1 36899999993 5666
Q ss_pred EEEecCCCCccEEEEecCCCeEEEEEeecCc--ceeEEEEEecCCCeEEEEeCC---CcEEEEECCCC-ceEEeccccCC
Q 011970 241 LIFNRSSSHVPLKILSIEDGTVLKVFYHLLH--RNKKVDFIEQFNEKLLVKQEN---ENLQILDVRNA-ELMEVSRTEFM 314 (474)
Q Consensus 241 a~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~--~v~~V~F~~~~~~~ll~~~~D---~tIkIWDv~tg-~~~~~l~~h~~ 314 (474)
|++ +.++.+-|||++.-+.+-.|..|.. ++..|+|.|..-.+++++++| -.|++||+|.- ..++++++|..
T Consensus 178 AS~---s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~ 254 (1049)
T KOG0307|consen 178 ASG---SPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR 254 (1049)
T ss_pred hcc---CCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccccc
Confidence 654 4467899999998777777776544 457899986555677776643 57999999974 46788999999
Q ss_pred ceEEEEEcCCC-cEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCC
Q 011970 315 TPSAFIFLYEN-QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSA 390 (474)
Q Consensus 315 ~v~sv~Fspdg-~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~-~LaS~s~~~~~~~~~~s~D 390 (474)
.|.++.|.+.. .+|+|+. |+.|-+||.+ ||.|.+|--..+| +..|.|.|-.- +++.+|. |
T Consensus 255 GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW-----~fdv~w~pr~P~~~A~asf-----------d 318 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNW-----CFDVQWCPRNPSVMAAASF-----------D 318 (1049)
T ss_pred ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcc-----eeeeeecCCCcchhhhhee-----------c
Confidence 99999999766 8888888 9999999995 9999999998899 57899999654 7777776 9
Q ss_pred CeEEEEeCCCC
Q 011970 391 GSINVSSILTG 401 (474)
Q Consensus 391 gtIklWdi~tG 401 (474)
|.|-|..+.++
T Consensus 319 gkI~I~sl~~~ 329 (1049)
T KOG0307|consen 319 GKISIYSLQGT 329 (1049)
T ss_pred cceeeeeeecC
Confidence 99999998654
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.62 E-value=3.2e-14 Score=152.35 Aligned_cols=269 Identities=10% Similarity=0.111 Sum_probs=201.2
Q ss_pred cEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeE
Q 011970 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (474)
Q Consensus 90 ~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~ 167 (474)
.|.+|+|. |-.|+-++ +..+-++|...|-.+.+|.| |.+.|++|||+.||+..||++ .| +.+-||.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKg-HKDtVycVAys~dGkrFASG~----aD------K~VI~W~ 81 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKG-HKDTVYCVAYAKDGKRFASGS----AD------KSVIIWT 81 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccccccccc-ccceEEEEEEccCCceeccCC----Cc------eeEEEec
Confidence 46677777 43333333 33567999999999999997 889999999999999999855 45 6777887
Q ss_pred eccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEc-CCceEEEEecC
Q 011970 168 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRS 246 (474)
Q Consensus 168 i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafS-pg~~la~~s~~ 246 (474)
-+---. ....|...+....|. |=.+.|||+|-. ..-+|..+.-...+.-....|.++++. +|+.++.+
T Consensus 82 ~klEG~------LkYSH~D~IQCMsFN-P~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG--- 150 (1081)
T KOG1538|consen 82 SKLEGI------LKYSHNDAIQCMSFN-PITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALG--- 150 (1081)
T ss_pred ccccce------eeeccCCeeeEeecC-chHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEe---
Confidence 432111 122244556688998 456789998853 366887554222221123578889999 56666665
Q ss_pred CCCccEEEEecCCCeEEEEEe---ecCcceeEEEEEecCC----CeEEEEeCCCcEEEEECCCCceEEeccccCCceEEE
Q 011970 247 SSHVPLKILSIEDGTVLKVFY---HLLHRNKKVDFIEQFN----EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAF 319 (474)
Q Consensus 247 s~D~tIkLWdi~tG~~L~tl~---~h~~~v~~V~F~~~~~----~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv 319 (474)
-.++||.|=| .+|+.--.+. |....+|+|+|+|..+ +.+++..+..|+-.+.+ +|+.+...+.-...+-.+
T Consensus 151 ~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~Ci 228 (1081)
T KOG1538|consen 151 MFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCI 228 (1081)
T ss_pred ccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccccCCCCchhh
Confidence 4478998887 5777755555 4567899999987553 57777889999999885 566666444444567778
Q ss_pred EEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 320 IFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 320 ~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
.+-|+|.+++-|+ |+.++++.-+|-.+-|+.....| +|+|+..|++|+.+.||. ||||--+|+
T Consensus 229 sYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~W-----IWtV~~~PNsQ~v~~GCq-----------DGTiACyNl 292 (1081)
T KOG1538|consen 229 SYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSW-----IWTVQAKPNSQYVVVGCQ-----------DGTIACYNL 292 (1081)
T ss_pred eeccCCcEEEEccCCCceEEEeecCeEEeecccccee-----EEEEEEccCCceEEEEEc-----------cCeeehhhh
Confidence 8889999999987 99999999889999999988889 799999999999999998 999999887
Q ss_pred C
Q 011970 399 L 399 (474)
Q Consensus 399 ~ 399 (474)
.
T Consensus 293 ~ 293 (1081)
T KOG1538|consen 293 I 293 (1081)
T ss_pred H
Confidence 4
No 185
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=2.6e-14 Score=143.97 Aligned_cols=282 Identities=14% Similarity=0.201 Sum_probs=191.1
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEee--CCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCC
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNK--NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 175 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fsp--dg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~ 175 (474)
+..+|++...|+|+|+|..||+.+..+.+ +...+.-+.|.. -...+++++. | .+||+||++...-.+
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~fk~-~~~~~N~vrf~~~ds~h~v~s~ss----D------G~Vr~wD~Rs~~e~a 108 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEFKG-PPATTNGVRFISCDSPHGVISCSS----D------GTVRLWDIRSQAESA 108 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhheecC-CCCcccceEEecCCCCCeeEEecc----C------CeEEEEEeecchhhh
Confidence 35688888999999999999999999997 557788888865 3566788763 3 499999997655422
Q ss_pred ccceeeeccccCceEEEEeCC--CCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCccEE
Q 011970 176 GFALFESESLKWPGFVEFDDV--NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLK 253 (474)
Q Consensus 176 ~~~lf~~~~~~~~~~V~Fs~~--nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIk 253 (474)
...|+.. .. -.+..|+ - ++++++.|..- ...|..|-
T Consensus 109 -~~~~~~~-~~-~~f~~ld-~nck~~ii~~GtE~--------------------------------------~~s~A~v~ 146 (376)
T KOG1188|consen 109 -RISWTQQ-SG-TPFICLD-LNCKKNIIACGTEL--------------------------------------TRSDASVV 146 (376)
T ss_pred -heeccCC-CC-CcceEee-ccCcCCeEEecccc--------------------------------------ccCceEEE
Confidence 2234432 11 1256775 4 46666665310 01234577
Q ss_pred EEecCCCeE-EEEEe-ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc----eEEeccccCCceEEEEEcCCC-c
Q 011970 254 ILSIEDGTV-LKVFY-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE----LMEVSRTEFMTPSAFIFLYEN-Q 326 (474)
Q Consensus 254 LWdi~tG~~-L~tl~-~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~----~~~~l~~h~~~v~sv~Fspdg-~ 326 (474)
|||++.-+. +..+. .|..-|..|.|.|.++..||+||.||-|-|+|+..-. ++.+.. |...|..+.|+-++ +
T Consensus 147 lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~~sSI~~igw~~~~yk 225 (376)
T KOG1188|consen 147 LWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-HGSSIHLIGWLSKKYK 225 (376)
T ss_pred EEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-ccceeeeeeeecCCcc
Confidence 888776554 55554 6788999999999999999999999999999987643 333433 44578889999777 3
Q ss_pred EEEEEc-CCcEEEEeCC-CcEEEEeccCCCCc------CCC-CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 327 LFLTFR-NRTVAVWNFR-GELVTSFEDHLLWH------PDC-NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 327 llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~------~~~-~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
.+.+-+ ..+.++|+++ |.++..|+...... .+| ++-+..-..++++.+.+.. ..+-++|-.-+
T Consensus 226 rI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~--------~~n~~~~~~~~ 297 (376)
T KOG1188|consen 226 RIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGT--------DSNKGTIFPLV 297 (376)
T ss_pred eEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEecc--------ccCceeEEEee
Confidence 355666 9999999995 98888776542100 000 1223333446666666542 11233333322
Q ss_pred -CC---CCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 398 -IL---TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 398 -i~---tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.. .++.++.|+||.. +.|.++.|...+..|+||++||.+.+|.
T Consensus 298 ~~~s~~~~~~~a~l~g~~~---------------------------------eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 298 DTSSGSLLTEPAILQGGHE---------------------------------EIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred ecccccccCccccccCCcH---------------------------------HHHHHHhhhcccceeeccCCCceEEEEe
Confidence 22 3455677777542 3789999999999999999999999996
Q ss_pred C
Q 011970 474 N 474 (474)
Q Consensus 474 ~ 474 (474)
+
T Consensus 345 ~ 345 (376)
T KOG1188|consen 345 V 345 (376)
T ss_pred c
Confidence 3
No 186
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.61 E-value=1.1e-15 Score=166.66 Aligned_cols=228 Identities=16% Similarity=0.205 Sum_probs=171.8
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCC
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG 260 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG 260 (474)
|...|.++.|+ ..|.++.+|+.|.-+|||.++|+.|+.+..+ ..|.++|.+- +-++|++ |.|.-|++|-+.+|
T Consensus 189 H~naVyca~fD-rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaa---S~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 189 HRNAVYCAIFD-RTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAA---SNDKVIRVWRLPDG 264 (1113)
T ss_pred hhhheeeeeec-cccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhc---ccCceEEEEecCCC
Confidence 46667788997 7999999999999999999999999999875 4799999995 5555543 67999999999999
Q ss_pred eEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEE-e-------------------------------
Q 011970 261 TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME-V------------------------------- 308 (474)
Q Consensus 261 ~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~-~------------------------------- 308 (474)
.++..|.||.+.|.+++|+|. .++|.|||+++||.+ -+.+. +
T Consensus 265 ~pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred chHHHHhccccceeeeccCcc-----ccCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 999999999999999999852 277899999999988 11100 0
Q ss_pred ---------ccccCCceEEEEEcCC-CcEEEEEc-CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 011970 309 ---------SRTEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 376 (474)
Q Consensus 309 ---------l~~h~~~v~sv~Fspd-g~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~ 376 (474)
+..|...+.-+.++.| .-..+++. +-.+++|++ +|.+++.+.+|... +.-+-|+|=.-.|+..
T Consensus 339 ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~-----~yvLd~Hpfn~ri~ms 413 (1113)
T KOG0644|consen 339 EARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDE-----VYVLDVHPFNPRIAMS 413 (1113)
T ss_pred ccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccc-----eeeeeecCCCcHhhhh
Confidence 0111111111111111 13344444 667889999 69999999999987 5678899966655542
Q ss_pred ecCCCccccccCCCCeEEEEeCCCCeEEEEe-cCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcC
Q 011970 377 CKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE 455 (474)
Q Consensus 377 s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSp 455 (474)
++.||++-|||+-.|-.++.. .||. .+..-.||+
T Consensus 414 ----------ag~dgst~iwdi~eg~pik~y~~gh~-----------------------------------kl~d~kFSq 448 (1113)
T KOG0644|consen 414 ----------AGYDGSTIIWDIWEGIPIKHYFIGHG-----------------------------------KLVDGKFSQ 448 (1113)
T ss_pred ----------ccCCCceEeeecccCCcceeeecccc-----------------------------------eeeccccCC
Confidence 456999999999999776544 5555 455689999
Q ss_pred CCCEEEEEcCCCcEEE
Q 011970 456 ERNEIYTGNRHGLVHV 471 (474)
Q Consensus 456 Dg~~LaSgs~DgtVkl 471 (474)
||+.++-....|.+.+
T Consensus 449 dgts~~lsd~hgql~i 464 (1113)
T KOG0644|consen 449 DGTSIALSDDHGQLYI 464 (1113)
T ss_pred CCceEecCCCCCceEE
Confidence 9999998888887765
No 187
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=5e-13 Score=141.13 Aligned_cols=222 Identities=9% Similarity=0.066 Sum_probs=147.2
Q ss_pred eEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCc
Q 011970 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 188 (474)
Q Consensus 109 tiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~ 188 (474)
.+.+||.+ |...+.|.. +.+.+.+..|||||+.|+.++... .+ .++.+|++..|+.. .+... ...+
T Consensus 183 ~l~~~d~d-g~~~~~lt~-~~~~v~~p~wSpDG~~lay~s~~~-g~------~~i~~~dl~~g~~~---~l~~~--~g~~ 248 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTD-GSSLVLTPRFSPNRQEITYMSYAN-GR------PRVYLLDLETGQRE---LVGNF--PGMT 248 (435)
T ss_pred EEEEECCC-CCCcEEEec-CCCCeEeeEECCCCCEEEEEEecC-CC------CEEEEEECCCCcEE---EeecC--CCcc
Confidence 67788865 677777775 567899999999999999887433 33 58899999888751 12221 1233
Q ss_pred eEEEEeCCCCeEEE-EecCCCc--EEEeecCCCeEEEEEc--CCcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeE
Q 011970 189 GFVEFDDVNGKVLT-YSAQDSI--YKVFDLKNYTMLYSIS--DKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTV 262 (474)
Q Consensus 189 ~~V~Fs~~nGk~La-S~s~D~t--iKlWdl~tg~~l~tl~--~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~ 262 (474)
...+|| |||+.|+ +.+.|+. |.+||++++++.. +. ...+.+.+|||++ .++..+...++..|.+||+.+|+.
T Consensus 249 ~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 249 FAPRFS-PDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred cCcEEC-CCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence 467898 7998776 4555655 6667998887643 43 2346789999854 455444333345689999877765
Q ss_pred EEEEeecCcceeEEEEEecCCCeEEEEeC---CCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-C-----
Q 011970 263 LKVFYHLLHRNKKVDFIEQFNEKLLVKQE---NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N----- 333 (474)
Q Consensus 263 L~tl~~h~~~v~~V~F~~~~~~~ll~~~~---D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D----- 333 (474)
. .+..+...+..+.|+ |+|++|+..+. +..|.+||+.+++......+ ..+....|+|||+.++..+ +
T Consensus 327 ~-~lt~~~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~--~~~~~p~~spDG~~i~~~~~~~~~~~ 402 (435)
T PRK05137 327 R-RISFGGGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSG--FLVEGPTWAPNGRVIMFFRQTPGSGG 402 (435)
T ss_pred E-EeecCCCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECCCCceEeccCC--CCCCCCeECCCCCEEEEEEccCCCCC
Confidence 4 343333455667886 67888887653 24688899876654333222 2466788999999987654 2
Q ss_pred -CcEEEEeCCCcEEEEec
Q 011970 334 -RTVAVWNFRGELVTSFE 350 (474)
Q Consensus 334 -~tIklWd~~G~ll~tl~ 350 (474)
..+.+.|++|...+.+.
T Consensus 403 ~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 403 APKLYTVDLTGRNEREVP 420 (435)
T ss_pred cceEEEEECCCCceEEcc
Confidence 24566677766555554
No 188
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.9e-13 Score=144.34 Aligned_cols=205 Identities=15% Similarity=0.121 Sum_probs=134.7
Q ss_pred CcEEEeecCCCeEEEEE--cCCcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCC
Q 011970 208 SIYKVFDLKNYTMLYSI--SDKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl--~~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~ 284 (474)
..+.+||. +|.....+ ....|.+.+|||++ .|+..+.......|.+||+.+|+... +......+..++|+ |++.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~S-PDG~ 252 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWS-PDGR 252 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEEC-CCCC
Confidence 35666676 44443333 34678999999855 55554433334469999999997643 33222455678887 6788
Q ss_pred eEEE-EeCCCcEEEEE--CCCCceEEeccccCCceEEEEEcCCCcEEEEEc--CCcEEEEeC--CCcEEE--EeccCCCC
Q 011970 285 KLLV-KQENENLQILD--VRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF--RGELVT--SFEDHLLW 355 (474)
Q Consensus 285 ~ll~-~~~D~tIkIWD--v~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~tIklWd~--~G~ll~--tl~gH~~~ 355 (474)
+|+. .+.|+..+||. +.+++.. .+..|........|+|||+.|+..+ ++...||.+ .+...+ ++.++ .
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~--~ 329 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLR-RLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGS--Y 329 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcE-ECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCC--C
Confidence 8876 46788877775 5556544 4444555566788999999887655 567888876 333333 33332 2
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccc
Q 011970 356 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 435 (474)
Q Consensus 356 ~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (474)
..+.+|||||++|+..+. .+.+..|.+||+.+|+.. .+..+.
T Consensus 330 -----~~~~~~SpDG~~Ia~~s~--------~~g~~~I~v~d~~~g~~~-~lt~~~------------------------ 371 (427)
T PRK02889 330 -----NTSPRISPDGKLLAYISR--------VGGAFKLYVQDLATGQVT-ALTDTT------------------------ 371 (427)
T ss_pred -----cCceEECCCCCEEEEEEc--------cCCcEEEEEEECCCCCeE-EccCCC------------------------
Confidence 235789999999997664 122347999999888754 443222
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEEcCCC
Q 011970 436 YIRSTVGEALEDITSLFYDEERNEIYTGNRHG 467 (474)
Q Consensus 436 ~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dg 467 (474)
...++.|+|||+.|+.++.++
T Consensus 372 -----------~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 372 -----------RDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred -----------CccCceECCCCCEEEEEEecC
Confidence 234679999999988777554
No 189
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=1.4e-14 Score=153.05 Aligned_cols=257 Identities=16% Similarity=0.162 Sum_probs=182.7
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCc---cceeee-ccccCceEEEEeCCCC
Q 011970 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG---FALFES-ESLKWPGFVEFDDVNG 198 (474)
Q Consensus 123 ~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~---~~lf~~-~~~~~~~~V~Fs~~nG 198 (474)
||. +|...|+.++|.|---.||+++ .| +++++|.++..+.... .++++. .|-+.|-+|..+ +||
T Consensus 289 tl~-s~~d~ir~l~~~~sep~lit~s----ed------~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~-~n~ 356 (577)
T KOG0642|consen 289 TLR-SHDDCIRALAFHPSEPVLITAS----ED------GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-SNG 356 (577)
T ss_pred eee-cchhhhhhhhcCCCCCeEEEec----cc------cchhhhhhcccCCccccceeeeEEEecccCceEEEEec-CCc
Confidence 454 6888999999998888899976 66 6888999833222111 134443 366777789996 899
Q ss_pred eEEEEecCCCcEEEeecC-------CCe---EEEEE--cCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEE
Q 011970 199 KVLTYSAQDSIYKVFDLK-------NYT---MLYSI--SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl~-------tg~---~l~tl--~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~t 265 (474)
+.+-+|+.|++|+.|++. +|. +..++ +.+.||.+++|+ -..|+++ +.|+|+++|+...... .+
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc---s~DgTvr~w~~~~~~~-~~ 432 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC---SSDGTVRLWEPTEESP-CT 432 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee---cCCceEEeeccCCcCc-cc
Confidence 999999999999999543 121 22233 457899999995 4456665 6689999999865554 55
Q ss_pred EeecC--cceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecccc-------CCceEEEEEcCCCcEEEEEc-CCc
Q 011970 266 FYHLL--HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE-------FMTPSAFIFLYENQLFLTFR-NRT 335 (474)
Q Consensus 266 l~~h~--~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h-------~~~v~sv~Fspdg~llaS~s-D~t 335 (474)
|..-. ..=.+|+|..-..-.+++...-+--.|.|+..+.-+.++... ...+.-++..|.+.+..++- |++
T Consensus 433 f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~ 512 (577)
T KOG0642|consen 433 FGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS 512 (577)
T ss_pred cCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc
Confidence 54221 122566764311112222223333445555555555443211 13455677789999888888 999
Q ss_pred EEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 336 VAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 336 IklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
|++.|. +|+++.+...|... |.+++|-|+|=+|+|++. |+.|++|.+..-.|+....+|.
T Consensus 513 Ir~~dn~~~~~l~s~~a~~~s-----vtslai~~ng~~l~s~s~-----------d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 513 IRFFDNKTGKILHSMVAHKDS-----VTSLAIDPNGPYLMSGSH-----------DGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eecccccccccchheeeccce-----ecceeecCCCceEEeecC-----------Cceeehhhccchheeecccccc
Confidence 999999 59999999999886 689999999999999987 9999999998999999888886
No 190
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.59 E-value=1.1e-13 Score=131.68 Aligned_cols=111 Identities=14% Similarity=0.205 Sum_probs=92.5
Q ss_pred cCCceEEEEEcCCCcEEEEE--c-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccC
Q 011970 312 EFMTPSAFIFLYENQLFLTF--R-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 312 h~~~v~sv~Fspdg~llaS~--s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s 388 (474)
+...|.+++|+|+|+.||.. . +++|.|||++++.+.+|..+ . ++.|.|||+|++||.++. +.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~--~-----~n~i~wsP~G~~l~~~g~--------~n 122 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQ--P-----RNTISWSPDGRFLVLAGF--------GN 122 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecCC--C-----ceEEEECCCCCEEEEEEc--------cC
Confidence 33469999999999987654 4 78999999999999998643 2 588999999999999875 23
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcC---
Q 011970 389 SAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR--- 465 (474)
Q Consensus 389 ~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~--- 465 (474)
..|.|.+||+.+.+++.+.+ |. .++.++|||||++|+|+..
T Consensus 123 ~~G~l~~wd~~~~~~i~~~~-~~-----------------------------------~~t~~~WsPdGr~~~ta~t~~r 166 (194)
T PF08662_consen 123 LNGDLEFWDVRKKKKISTFE-HS-----------------------------------DATDVEWSPDGRYLATATTSPR 166 (194)
T ss_pred CCcEEEEEECCCCEEeeccc-cC-----------------------------------cEEEEEEcCCCCEEEEEEeccc
Confidence 45889999999999998864 33 5788999999999999874
Q ss_pred ---CCcEEEcc
Q 011970 466 ---HGLVHVWS 473 (474)
Q Consensus 466 ---DgtVklWd 473 (474)
|+.++||+
T Consensus 167 ~~~dng~~Iw~ 177 (194)
T PF08662_consen 167 LRVDNGFKIWS 177 (194)
T ss_pred eeccccEEEEE
Confidence 88999997
No 191
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=3.3e-13 Score=142.46 Aligned_cols=239 Identities=10% Similarity=0.097 Sum_probs=143.1
Q ss_pred eeccEEEEeeCCC--eEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCC
Q 011970 96 AARDIVFALAHSG--VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 173 (474)
Q Consensus 96 ~s~~~las~s~dg--tiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~ 173 (474)
|++.+.+.....+ .+.++|. .|+..+.+.. +.+.+.+.+|||||+.|+.++.. ..+ ..+.+|++.+|+.
T Consensus 162 f~~~iayv~~~~~~~~L~~~D~-dG~~~~~l~~-~~~~v~~p~wSPDG~~la~~s~~-~~~------~~I~~~dl~~g~~ 232 (427)
T PRK02889 162 FSTRIAYVIKTGNRYQLQISDA-DGQNAQSALS-SPEPIISPAWSPDGTKLAYVSFE-SKK------PVVYVHDLATGRR 232 (427)
T ss_pred cccEEEEEEccCCccEEEEECC-CCCCceEecc-CCCCcccceEcCCCCEEEEEEcc-CCC------cEEEEEECCCCCE
Confidence 4455555544433 4555665 3777666664 55779999999999999987632 233 4688999988875
Q ss_pred CCccceeeeccccCceEEEEeCCCCeEEEE-ecCCCcEEEeec--CCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCc
Q 011970 174 DSGFALFESESLKWPGFVEFDDVNGKVLTY-SAQDSIYKVFDL--KNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHV 250 (474)
Q Consensus 174 ~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS-~s~D~tiKlWdl--~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~ 250 (474)
. .+... -......+|| |||+.|+. .+.|+...||.+ .++. +..
T Consensus 233 ~---~l~~~--~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~--------------------------- 278 (427)
T PRK02889 233 R---VVANF--KGSNSAPAWS-PDGRTLAVALSRDGNSQIYTVNADGSG-LRR--------------------------- 278 (427)
T ss_pred E---EeecC--CCCccceEEC-CCCCEEEEEEccCCCceEEEEECCCCC-cEE---------------------------
Confidence 2 12211 1233468998 79988874 566776666653 2221 111
Q ss_pred cEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe-CCCcEEEEEC--CCCceEEe-ccccCCceEEEEEcCCCc
Q 011970 251 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDV--RNAELMEV-SRTEFMTPSAFIFLYENQ 326 (474)
Q Consensus 251 tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv--~tg~~~~~-l~~h~~~v~sv~Fspdg~ 326 (474)
+..+...+..+.|+ |+|.+|+..+ .++..+||.+ .+++..+. +.+ ......+|||||+
T Consensus 279 ---------------lt~~~~~~~~~~wS-pDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g--~~~~~~~~SpDG~ 340 (427)
T PRK02889 279 ---------------LTQSSGIDTEPFFS-PDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG--SYNTSPRISPDGK 340 (427)
T ss_pred ---------------CCCCCCCCcCeEEc-CCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC--CCcCceEECCCCC
Confidence 21111222334454 4555555544 3455666643 45554333 222 2233568999999
Q ss_pred EEEEEc-CC---cEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 011970 327 LFLTFR-NR---TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 401 (474)
Q Consensus 327 llaS~s-D~---tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG 401 (474)
.++..+ ++ .|.+||+. |+.. .+..+. + ..+..|+|||+.|+..+.. +....+.+-++ +|
T Consensus 341 ~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~~-~-----~~~p~~spdg~~l~~~~~~--------~g~~~l~~~~~-~g 404 (427)
T PRK02889 341 LLAYISRVGGAFKLYVQDLATGQVT-ALTDTT-R-----DESPSFAPNGRYILYATQQ--------GGRSVLAAVSS-DG 404 (427)
T ss_pred EEEEEEccCCcEEEEEEECCCCCeE-EccCCC-C-----ccCceECCCCCEEEEEEec--------CCCEEEEEEEC-CC
Confidence 998766 43 69999996 6543 444332 2 2568999999999987751 11233555565 67
Q ss_pred eEEEEecCCC
Q 011970 402 KCLAKINATN 411 (474)
Q Consensus 402 ~cl~tl~gH~ 411 (474)
+..+.+..+.
T Consensus 405 ~~~~~l~~~~ 414 (427)
T PRK02889 405 RIKQRLSVQG 414 (427)
T ss_pred CceEEeecCC
Confidence 7777776554
No 192
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.55 E-value=3e-12 Score=132.74 Aligned_cols=204 Identities=11% Similarity=0.097 Sum_probs=137.6
Q ss_pred ceEEEEeCCCCeEEEEecCC---CcEEEeecCCCeEEEEE-cCCcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeE
Q 011970 188 PGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSI-SDKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTV 262 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D---~tiKlWdl~tg~~l~tl-~~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~ 262 (474)
+.+.+|| |||+.||+.+.+ .+|.+||+++|+..... ....+..++|||++ .|+..........|.+||+.+|+.
T Consensus 192 ~~~p~~S-pdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~ 270 (417)
T TIGR02800 192 ILSPAWS-PDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL 270 (417)
T ss_pred eecccCC-CCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE
Confidence 4467898 799999988754 48999999998754322 23456779999854 565443333445799999998865
Q ss_pred EEEEeecCcceeEEEEEecCCCeEEEEeC-CC--cEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CC---c
Q 011970 263 LKVFYHLLHRNKKVDFIEQFNEKLLVKQE-NE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR---T 335 (474)
Q Consensus 263 L~tl~~h~~~v~~V~F~~~~~~~ll~~~~-D~--tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~---t 335 (474)
. .+..+........|+ |++.+|+..+. ++ .|.++|+.+++..++ ..+......++|+|||++++..+ ++ .
T Consensus 271 ~-~l~~~~~~~~~~~~s-~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l-~~~~~~~~~~~~spdg~~i~~~~~~~~~~~ 347 (417)
T TIGR02800 271 T-RLTNGPGIDTEPSWS-PDGKSIAFTSDRGGSPQIYMMDADGGEVRRL-TFRGGYNASPSWSPDGDLIAFVHREGGGFN 347 (417)
T ss_pred E-ECCCCCCCCCCEEEC-CCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccCeEECCCCCEEEEEEccCCceE
Confidence 4 344443445567887 67888887653 33 577788888876544 33445667789999999998877 54 7
Q ss_pred EEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 336 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 336 IklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
|.+||+.+...+.+..+.. .....|+|||+.|+..+.. +....+.+.+ .+|+....+..+
T Consensus 348 i~~~d~~~~~~~~l~~~~~------~~~p~~spdg~~l~~~~~~--------~~~~~l~~~~-~~g~~~~~~~~~ 407 (417)
T TIGR02800 348 IAVMDLDGGGERVLTDTGL------DESPSFAPNGRMILYATTR--------GGRGVLGLVS-TDGRFRARLPLG 407 (417)
T ss_pred EEEEeCCCCCeEEccCCCC------CCCceECCCCCEEEEEEeC--------CCcEEEEEEE-CCCceeeECCCC
Confidence 8899986333344443221 2456899999999887651 1123566666 467777776544
No 193
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.53 E-value=1.3e-12 Score=124.40 Aligned_cols=168 Identities=15% Similarity=0.239 Sum_probs=103.6
Q ss_pred EEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEecc-CCCCCccceeeeccccCceEEEEeCCCCeEEE--EecCCCc
Q 011970 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-GKPDSGFALFESESLKWPGFVEFDDVNGKVLT--YSAQDSI 209 (474)
Q Consensus 133 ~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~-G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~La--S~s~D~t 209 (474)
-.+.|+|+|+.|+.-.....+.=..-......|+.+.. +.......+-. -+.|..++|+ |+|+.+| +|..+..
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~---~~~I~~~~Ws-P~g~~favi~g~~~~~ 84 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK---EGPIHDVAWS-PNGNEFAVIYGSMPAK 84 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC---CCceEEEEEC-cCCCEEEEEEccCCcc
Confidence 46778888887754332000110001112345555522 22222212211 2246699998 7998754 4567889
Q ss_pred EEEeecCCCeEEEEEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEE
Q 011970 210 YKVFDLKNYTMLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV 288 (474)
Q Consensus 210 iKlWdl~tg~~l~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~ 288 (474)
|.|||++ ++.+.++....+..|.||| |.++|+++.+...+.|.+||+++.+++.+++
T Consensus 85 v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--------------------- 142 (194)
T PF08662_consen 85 VTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--------------------- 142 (194)
T ss_pred cEEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---------------------
Confidence 9999996 8888999888889999998 5666665433323445555555544444433
Q ss_pred EeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-------CCcEEEEeCCCcEEEEec
Q 011970 289 KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-------NRTVAVWNFRGELVTSFE 350 (474)
Q Consensus 289 ~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-------D~tIklWd~~G~ll~tl~ 350 (474)
|. .+..++|||||++|+|+. |+.++||+++|+++....
T Consensus 143 -----------------------~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 143 -----------------------HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred -----------------------cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 21 246778888888888763 788899999998876543
No 194
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.53 E-value=2e-11 Score=127.23 Aligned_cols=306 Identities=14% Similarity=0.125 Sum_probs=189.4
Q ss_pred EEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcccee
Q 011970 101 VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALF 180 (474)
Q Consensus 101 las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf 180 (474)
+++...++.+.+.|..|++.+.++.... +.--.+.|+|||+++..++. | ..+.++|+.+++..++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~r----d------g~vsviD~~~~~~v~~i~-- 75 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGRYLYVANR----D------GTVSVIDLATGKVVATIK-- 75 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEEEEET----T------SEEEEEETTSSSEEEEEE--
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCCEEEEEcC----C------CeEEEEECCcccEEEEEe--
Confidence 3567789999999999999999998633 44456889999999887662 3 478899999999755322
Q ss_pred eeccccCceEEEEeCCCCeEEEEec-CCCcEEEeecCCCeEEEEEcC---------CcEEEEEEcCCce-EEEEecCCCC
Q 011970 181 ESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSISD---------KHVQEIKISPGIM-LLIFNRSSSH 249 (474)
Q Consensus 181 ~~~~~~~~~~V~Fs~~nGk~LaS~s-~D~tiKlWdl~tg~~l~tl~~---------~~V~~vafSpg~~-la~~s~~s~D 249 (474)
. -..+..+++| +||++|+.+. .++++.|+|.+|.+.+++++. ..|.+|..+|+.. ++..-.. -
T Consensus 76 -~--G~~~~~i~~s-~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd--~ 149 (369)
T PF02239_consen 76 -V--GGNPRGIAVS-PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD--T 149 (369)
T ss_dssp ----SSEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT--T
T ss_pred -c--CCCcceEEEc-CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc--C
Confidence 1 2346689998 7999887654 689999999999999998863 2577888897544 4433222 2
Q ss_pred ccEEEEecCCCeEEE--EEeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEecc----ccCCceEEEE--
Q 011970 250 VPLKILSIEDGTVLK--VFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSR----TEFMTPSAFI-- 320 (474)
Q Consensus 250 ~tIkLWdi~tG~~L~--tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~----~h~~~v~sv~-- 320 (474)
..|-+-|..+.+.+. .+. ....-....|. |++.+++++ ...+.|-++|.++++...... .|......+-
T Consensus 150 ~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~d-pdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php 227 (369)
T PF02239_consen 150 GEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFD-PDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHP 227 (369)
T ss_dssp TEEEEEETTTSSCEEEEEEE---TTEEEEEE--TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEET
T ss_pred CeEEEEEeccccccceeeec-ccccccccccC-cccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCC
Confidence 345555766655443 332 11222445554 677777775 467799999999998765431 1332222221
Q ss_pred -------EcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 011970 321 -------FLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 391 (474)
Q Consensus 321 -------Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg 391 (474)
.+-.+...++.- ...+.+||.. .+.+++++..... --+.-+||++++...... ....+
T Consensus 228 ~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g------lFi~thP~s~~vwvd~~~-------~~~~~ 294 (369)
T PF02239_consen 228 GFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG------LFIKTHPDSRYVWVDTFL-------NPDAD 294 (369)
T ss_dssp TTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--------EE--TT-SEEEEE-TT--------SSHT
T ss_pred CcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc------ceeecCCCCccEEeeccC-------CCCCc
Confidence 122333333333 5567789985 9999999876553 357789999999986221 12258
Q ss_pred eEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCC--cE
Q 011970 392 SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG--LV 469 (474)
Q Consensus 392 tIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dg--tV 469 (474)
+|-++|..|-+.+.+|..... ..+.-+.|+|||++++-...|+ .|
T Consensus 295 ~v~viD~~tl~~~~~i~~~~~---------------------------------~~~~h~ef~~dG~~v~vS~~~~~~~i 341 (369)
T PF02239_consen 295 TVQVIDKKTLKVVKTITPGPG---------------------------------KRVVHMEFNPDGKEVWVSVWDGNGAI 341 (369)
T ss_dssp -EEEEECCGTEEEE-HHHHHT-----------------------------------EEEEEE-TTSSEEEEEEE--TTEE
T ss_pred eEEEEECcCcceeEEEeccCC---------------------------------CcEeccEECCCCCEEEEEEecCCCEE
Confidence 999999999988888864431 1477899999999877655433 58
Q ss_pred EEcc
Q 011970 470 HVWS 473 (474)
Q Consensus 470 klWd 473 (474)
.++|
T Consensus 342 ~v~D 345 (369)
T PF02239_consen 342 VVYD 345 (369)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 195
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.52 E-value=1.1e-13 Score=141.75 Aligned_cols=150 Identities=13% Similarity=0.175 Sum_probs=128.2
Q ss_pred cceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc---------eEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEe
Q 011970 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE---------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 340 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~---------~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd 340 (474)
.++.+++|.+.+.+++++++.|..|+||-+..++ .+.+|..|...|..|-|+|+|.+|||++ +|.|-||-
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 5788889875544588889999999999887643 3456889999999999999999999999 88999998
Q ss_pred CC--------C-----c----EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 341 FR--------G-----E----LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 341 ~~--------G-----~----ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
.. . + ....+.+|..- +..++++||+.+++++|. |.++++||+..|+.
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~d-----iydL~Ws~d~~~l~s~s~-----------dns~~l~Dv~~G~l 157 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDD-----IYDLAWSPDSNFLVSGSV-----------DNSVRLWDVHAGQL 157 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccc-----hhhhhccCCCceeeeeec-----------cceEEEEEecccee
Confidence 54 2 1 34578888876 567999999999999987 99999999999999
Q ss_pred EEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEE
Q 011970 404 LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 470 (474)
Q Consensus 404 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVk 470 (474)
++.+.+|.. .|..++++|-+|+++|=|.|...+
T Consensus 158 ~~~~~dh~~----------------------------------yvqgvawDpl~qyv~s~s~dr~~~ 190 (434)
T KOG1009|consen 158 LAILDDHEH----------------------------------YVQGVAWDPLNQYVASKSSDRHPE 190 (434)
T ss_pred Eeecccccc----------------------------------ccceeecchhhhhhhhhccCcccc
Confidence 999999996 888999999999999988887443
No 196
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=2.1e-13 Score=140.22 Aligned_cols=186 Identities=12% Similarity=0.086 Sum_probs=143.8
Q ss_pred EEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe
Q 011970 230 QEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV 308 (474)
Q Consensus 230 ~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~ 308 (474)
..|||++ |..+++. +.|+++|+|+...=+.+..+..|...|..++|+ ||++.|++-+.| ..+|||+++|.+++.
T Consensus 148 k~vaf~~~gs~latg---g~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS-~dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATG---GTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFS-PDGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeec---cccceEEEEecCcchhhhhhHhhcCccccceeC-CCCcEEEEecCC-ceEEEEeccCchhhh
Confidence 5799996 6777775 568999999977766666666677899999998 566666666888 999999999988876
Q ss_pred cc--ccCCceEEEEEcCCC-----cEEEEEc-CCcEEEEeCC---C----cEEEEeccCCCCcCCCCeeEEEECCCCCEE
Q 011970 309 SR--TEFMTPSAFIFLYEN-----QLFLTFR-NRTVAVWNFR---G----ELVTSFEDHLLWHPDCNTNNIYITSDQDLI 373 (474)
Q Consensus 309 l~--~h~~~v~sv~Fspdg-----~llaS~s-D~tIklWd~~---G----~ll~tl~gH~~~~~~~~v~svafSpDg~~L 373 (474)
+. .-.....++-|+-|+ .+++.-. -+.|.+||+. | ..-+-...|.. +.+++.|+||+++
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~s------iSsl~VS~dGkf~ 296 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKS------ISSLAVSDDGKFL 296 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCc------ceeEEEcCCCcEE
Confidence 54 223345567799888 4444444 5577787762 3 23333334433 6899999999999
Q ss_pred EEEecCCCccccccCCCCeEEEEeCCCCeEEEEe-cCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEE
Q 011970 374 ISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLF 452 (474)
Q Consensus 374 aS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sla 452 (474)
|-|+. ||.|-|.+..+=|+++-. ++|.. -|++|.
T Consensus 297 AlGT~-----------dGsVai~~~~~lq~~~~vk~aH~~----------------------------------~VT~lt 331 (398)
T KOG0771|consen 297 ALGTM-----------DGSVAIYDAKSLQRLQYVKEAHLG----------------------------------FVTGLT 331 (398)
T ss_pred EEecc-----------CCcEEEEEeceeeeeEeehhhhee----------------------------------eeeeEE
Confidence 99987 999999999888888766 44654 899999
Q ss_pred EcCCCCEEEEEcCCCcEEE
Q 011970 453 YDEERNEIYTGNRHGLVHV 471 (474)
Q Consensus 453 fSpDg~~LaSgs~DgtVkl 471 (474)
|+||.+.+++-|.|.+++|
T Consensus 332 F~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 332 FSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred EcCCcCcccccccCCceeE
Confidence 9999999999999998876
No 197
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=9.5e-14 Score=144.88 Aligned_cols=331 Identities=11% Similarity=0.122 Sum_probs=224.5
Q ss_pred chhhhhhhcccccccCCcccccchhhhhhcccccceeecccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEE
Q 011970 32 VNSVKKLQRREICSKRDRAFSISNAQERFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCA 111 (474)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtik 111 (474)
-+++..|-.||+++.+.=...+..++-+-+.+.|++-+..|.+-+....|+.. |+.|+|+|.|..+-
T Consensus 101 w~~~~~l~~Re~gss~~f~~~~~~s~~~vqr~~l~~kL~~H~GcVntV~FN~~-------------Gd~l~SgSDD~~vv 167 (559)
T KOG1334|consen 101 WQSGTALHQRELGSSSRFVYEACGSRLFVQRLRLQKKLNKHKGCVNTVHFNQR-------------GDVLASGSDDLQVV 167 (559)
T ss_pred cchhhHHHhhhcCchhHHHHHhhhhHHHHHHhhhhhcccCCCCccceeeeccc-------------CceeeccCccceEE
Confidence 45678888999995422111223334445567788888888887777777666 99999999999999
Q ss_pred eeeccccceeeEeecCCCceEEEEEEeeC--CCEEEEEEeecCCCccceeeeEEEEeEe-ccCCCCCccceeeeccccCc
Q 011970 112 AFSRETNRRICFLNVSPDEVIRSLFYNKN--NDSLITVSVYASDNFSSLKCRSTKIEYI-RRGKPDSGFALFESESLKWP 188 (474)
Q Consensus 112 lW~~~tg~~l~~l~g~~~~~i~sv~fspd--g~~Lis~S~~~s~d~s~Lk~~~~~iw~i-~~G~~~~~~~lf~~~~~~~~ 188 (474)
+||..+++....+.++|.+.|.---|=|+ -++|++.+++ +++++-.| .+|++.++..+-.++ +++
T Consensus 168 ~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~d----------gqvr~s~i~~t~~~e~t~rl~~h~--g~v 235 (559)
T KOG1334|consen 168 VWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRD----------GQVRVSEILETGYVENTKRLAPHE--GPV 235 (559)
T ss_pred eehhhccCcccccccccccchhhhhccCCCCCcCceecccc----------Cceeeeeeccccceecceeccccc--Ccc
Confidence 99999988766666667665555456444 5678886644 46666655 677776555555553 333
Q ss_pred eEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCcc--EEEEecCCCeEEEEE
Q 011970 189 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVP--LKILSIEDGTVLKVF 266 (474)
Q Consensus 189 ~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~t--IkLWdi~tG~~L~tl 266 (474)
.-++-.|..-+.|.|++.|+.++=.|+.++.....+. + -..|.. |.|.+|
T Consensus 236 hklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-----------------c--r~~~~~~~v~L~~I--------- 287 (559)
T KOG1334|consen 236 HKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-----------------C--READEKERVGLYTI--------- 287 (559)
T ss_pred ceeeecCCCCCcccccccccceeeeeeccCCccceee-----------------e--eccCCccceeeeeE---------
Confidence 3444444344678899999999999987655322221 0 011112 322222
Q ss_pred eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc-----------eEEecc-ccCCceEEEEEc-CCCcEEEEEcC
Q 011970 267 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-----------LMEVSR-TEFMTPSAFIFL-YENQLFLTFRN 333 (474)
Q Consensus 267 ~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~-----------~~~~l~-~h~~~v~sv~Fs-pdg~llaS~sD 333 (474)
+..|.....+++++.|.-++++|.+.-. |-..+. .....|..++|+ ..+.+|||-+|
T Consensus 288 ----------a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnD 357 (559)
T KOG1334|consen 288 ----------AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYND 357 (559)
T ss_pred ----------ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecc
Confidence 1112212355556777777777766422 111111 223467899999 66777777679
Q ss_pred CcEEEEeCC---C----------cEEEE-eccCCCCcCCCCeeEE-EECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 334 RTVAVWNFR---G----------ELVTS-FEDHLLWHPDCNTNNI-YITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 334 ~tIklWd~~---G----------~ll~t-l~gH~~~~~~~~v~sv-afSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
--|-|.+-. | .++.- ++||.+-. .|..| .|-|...|++|||. =|-|=||+-
T Consensus 358 e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~---TVKgVNFfGPrsEyVvSGSD-----------CGhIFiW~K 423 (559)
T KOG1334|consen 358 EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSR---TVKGVNFFGPRSEYVVSGSD-----------CGHIFIWDK 423 (559)
T ss_pred cceEEeccccccCCCCCCCcchhhccchhhccccccc---ccceeeeccCccceEEecCc-----------cceEEEEec
Confidence 999999863 6 34444 89998753 24444 56899999999986 688999999
Q ss_pred CCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 399 LTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 399 ~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.+|+.|+-++|... .|.+|.=+|--..|||.+-|.-||||-
T Consensus 424 ~t~eii~~MegDr~----------------------------------VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 424 KTGEIIRFMEGDRH----------------------------------VVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred chhHHHHHhhcccc----------------------------------eEeccCCCCCCchhhccCCccceeeec
Confidence 99999999998764 789999999999999999999999994
No 198
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1e-11 Score=130.30 Aligned_cols=235 Identities=10% Similarity=0.087 Sum_probs=150.2
Q ss_pred eEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCc
Q 011970 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 188 (474)
Q Consensus 109 tiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~ 188 (474)
.+.++|.+ |.....+.. +.+.+.+..|||||+.|+.++... .. ..+.++++.+|+.. .+... -+..
T Consensus 180 ~l~~~d~~-g~~~~~l~~-~~~~~~~p~wSpDG~~la~~s~~~-~~------~~l~~~~l~~g~~~---~l~~~--~g~~ 245 (430)
T PRK00178 180 TLQRSDYD-GARAVTLLQ-SREPILSPRWSPDGKRIAYVSFEQ-KR------PRIFVQNLDTGRRE---QITNF--EGLN 245 (430)
T ss_pred EEEEECCC-CCCceEEec-CCCceeeeeECCCCCEEEEEEcCC-CC------CEEEEEECCCCCEE---EccCC--CCCc
Confidence 46667766 555566654 457789999999999999876322 22 46778898888751 12221 1233
Q ss_pred eEEEEeCCCCeEEEE-ecCCC--cEEEeecCCCeEEEEEc--CCcEEEEEEcCC-ceEEEEecCCCCccEEEEecCCCeE
Q 011970 189 GFVEFDDVNGKVLTY-SAQDS--IYKVFDLKNYTMLYSIS--DKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTV 262 (474)
Q Consensus 189 ~~V~Fs~~nGk~LaS-~s~D~--tiKlWdl~tg~~l~tl~--~~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~~ 262 (474)
...+|| |||+.|+. .+.++ .|.+||+++++... +. ...+.+..|||+ ..++..+.......|.++|+.+|+.
T Consensus 246 ~~~~~S-pDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 246 GAPAWS-PDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred CCeEEC-CCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 368998 79998874 44444 58888999887543 33 234567899985 4455443323345688899999885
Q ss_pred EEEEeecCcceeEEEEEecCCCeEEEEe-CCC--cEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc--CC--c
Q 011970 263 LKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--T 335 (474)
Q Consensus 263 L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~--tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~--t 335 (474)
.. +...........|+ |++.+++... .++ .|.+||+.+++........ ......|+|||+.++-.+ ++ .
T Consensus 324 ~~-lt~~~~~~~~~~~S-pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~--~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 324 ER-VTFVGNYNARPRLS-ADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS--LDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred EE-eecCCCCccceEEC-CCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC--CCCCceECCCCCEEEEEEecCCceE
Confidence 43 22112333456776 6788887765 333 5788999999865543322 223458999999998776 33 4
Q ss_pred EEEEeCCCcEEEEeccCCCCcCCCCeeEEEECC
Q 011970 336 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 368 (474)
Q Consensus 336 IklWd~~G~ll~tl~gH~~~~~~~~v~svafSp 368 (474)
|.+.+++|+..+.+..+... +...+|||
T Consensus 400 l~~~~~~g~~~~~l~~~~g~-----~~~p~ws~ 427 (430)
T PRK00178 400 LMLVSINGRVRLPLPTAQGE-----VREPSWSP 427 (430)
T ss_pred EEEEECCCCceEECcCCCCC-----cCCCccCC
Confidence 66777778777666644333 34555665
No 199
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.51 E-value=6.9e-12 Score=130.03 Aligned_cols=209 Identities=15% Similarity=0.095 Sum_probs=135.6
Q ss_pred CCcEEEeecCCCeEEEEEc--CCcEEEEEEcCC-ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCC
Q 011970 207 DSIYKVFDLKNYTMLYSIS--DKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 283 (474)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~ 283 (474)
...|.++|...+. ...+. ...+.+.+|||+ ..||..........|.+||+++|+..... .+...+..+.|+ |++
T Consensus 169 ~~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~~~~~~~~~s-pDg 245 (417)
T TIGR02800 169 RYELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFPGMNGAPAFS-PDG 245 (417)
T ss_pred cceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCCCCccceEEC-CCC
Confidence 3457777775443 33333 346899999984 45555443333467999999998764332 333456678887 677
Q ss_pred CeEEEE-eCC--CcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc--CC--cEEEEeCCCcEEEEeccCCCCc
Q 011970 284 EKLLVK-QEN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAVWNFRGELVTSFEDHLLWH 356 (474)
Q Consensus 284 ~~ll~~-~~D--~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~--tIklWd~~G~ll~tl~gH~~~~ 356 (474)
..|+.. +.+ ..|.+||+.+++..+.. .+........|+|||+.|+..+ ++ .|-+||+.+...+.+..+...
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~- 323 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGY- 323 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC-
Confidence 777764 444 46889999988765553 3434445678999999887655 33 566777764334445444333
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccc
Q 011970 357 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 436 (474)
Q Consensus 357 ~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (474)
...++|+|||++|+..+.. +.-..|.+||+.+++. ..+..+.
T Consensus 324 ----~~~~~~spdg~~i~~~~~~--------~~~~~i~~~d~~~~~~-~~l~~~~------------------------- 365 (417)
T TIGR02800 324 ----NASPSWSPDGDLIAFVHRE--------GGGFNIAVMDLDGGGE-RVLTDTG------------------------- 365 (417)
T ss_pred ----ccCeEECCCCCEEEEEEcc--------CCceEEEEEeCCCCCe-EEccCCC-------------------------
Confidence 3578999999999987651 1123799999987654 3333322
Q ss_pred ccccccccccCEEEEEEcCCCCEEEEEcCCCc
Q 011970 437 IRSTVGEALEDITSLFYDEERNEIYTGNRHGL 468 (474)
Q Consensus 437 ~~~~~~~~l~~V~slafSpDg~~LaSgs~Dgt 468 (474)
.....+|+|||+.|+.++.++.
T Consensus 366 ----------~~~~p~~spdg~~l~~~~~~~~ 387 (417)
T TIGR02800 366 ----------LDESPSFAPNGRMILYATTRGG 387 (417)
T ss_pred ----------CCCCceECCCCCEEEEEEeCCC
Confidence 2234689999999888876653
No 200
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=4.8e-11 Score=126.62 Aligned_cols=315 Identities=15% Similarity=0.253 Sum_probs=214.4
Q ss_pred EEEEEee-ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEE---eecCCCccceeeeEEEEe
Q 011970 91 VIEIVAA-RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVS---VYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 91 V~~i~~s-~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S---~~~s~d~s~Lk~~~~~iw 166 (474)
+....++ +-.+++.+.++.+++++..++..+-+... . .++.+-|||-|.+|-|== .++.. +-..-.+.+|
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~--~-~~~~L~fSP~g~yL~T~e~~~i~~~~---~~~~pn~~v~ 110 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVEL--K-KTYDLLFSPKGNYLLTWEPWAIYGPK---NASNPNVLVY 110 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEecc--c-eeeeeeecccccccccccccccccCC---CCCCCceeee
Confidence 4556666 77788999999999999999854444443 2 489999999999986511 11111 1223455688
Q ss_pred EeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe-EEEEEcCCcEEEEEEcCC---ceEEE
Q 011970 167 YIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDKHVQEIKISPG---IMLLI 242 (474)
Q Consensus 167 ~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~-~l~tl~~~~V~~vafSpg---~~la~ 242 (474)
++.+|.....+..-. .-+| ...|+ +|..+ +.==..+.+.++++.+-+ ....|+...|...++||| ..+|+
T Consensus 111 ~vet~~~~s~~q~k~--Q~~W--~~qfs-~dEsl-~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAv 184 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKM--QNGW--VPQFS-IDESL-AARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAV 184 (566)
T ss_pred eeccceehhheehhh--hcCc--ccccc-cchhh-hhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEE
Confidence 888866532211111 1336 78898 46533 322235679999987644 445667778999999987 57787
Q ss_pred EecCCC--CccEEEEecCCCeEE-----EEEeecCcceeEEEEE-ecCC-CeEEEEe--CC---------CcEEEEECCC
Q 011970 243 FNRSSS--HVPLKILSIEDGTVL-----KVFYHLLHRNKKVDFI-EQFN-EKLLVKQ--EN---------ENLQILDVRN 302 (474)
Q Consensus 243 ~s~~s~--D~tIkLWdi~tG~~L-----~tl~~h~~~v~~V~F~-~~~~-~~ll~~~--~D---------~tIkIWDv~t 302 (474)
+-+.+. -..+|||...-+..- ++|- ...+|.|. .+-+ ..|+..+ .| .++.+.++++
T Consensus 185 yvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF----kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g 260 (566)
T KOG2315|consen 185 YVPEKKGAPASVRIYKYPEEGQHQPVANKSFF----KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG 260 (566)
T ss_pred EccCCCCCCcEEEEeccccccccchhhhcccc----ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence 766532 235999987522221 2221 12334442 1222 2333333 34 4788999884
Q ss_pred CceEEeccccCCceEEEEEcCCCcEEEEEc---CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecC
Q 011970 303 AELMEVSRTEFMTPSAFIFLYENQLFLTFR---NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 379 (474)
Q Consensus 303 g~~~~~l~~h~~~v~sv~Fspdg~llaS~s---D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~ 379 (474)
-.+.--|. ..+.|.++.|+|.|+-|+... =-+|.|.|++|+.+..|-. +. =|.++|+|.|++|+-++.
T Consensus 261 ~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~e--gp-----RN~~~fnp~g~ii~lAGF- 331 (566)
T KOG2315|consen 261 ESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPE--GP-----RNTAFFNPHGNIILLAGF- 331 (566)
T ss_pred ceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCC--CC-----ccceEECCCCCEEEEeec-
Confidence 44443343 456999999999998887653 7799999999999988742 22 278999999999999887
Q ss_pred CCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE
Q 011970 380 EPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE 459 (474)
Q Consensus 380 ~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~ 459 (474)
+---|.|.+||+.+-||+.++++-.. +-+.|+|||++
T Consensus 332 -------GNL~G~mEvwDv~n~K~i~~~~a~~t------------------------------------t~~eW~PdGe~ 368 (566)
T KOG2315|consen 332 -------GNLPGDMEVWDVPNRKLIAKFKAANT------------------------------------TVFEWSPDGEY 368 (566)
T ss_pred -------CCCCCceEEEeccchhhccccccCCc------------------------------------eEEEEcCCCcE
Confidence 33468999999999999999987652 34899999999
Q ss_pred EEEEc------CCCcEEEcc
Q 011970 460 IYTGN------RHGLVHVWS 473 (474)
Q Consensus 460 LaSgs------~DgtVklWd 473 (474)
++|+. .|+-+|||+
T Consensus 369 flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 369 FLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred EEEEeccccEEecCCeEEEE
Confidence 99887 388999997
No 201
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.5e-11 Score=135.41 Aligned_cols=324 Identities=11% Similarity=0.118 Sum_probs=205.1
Q ss_pred EEee-ccEEEEeeCCCeEEeeeccccc---eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec
Q 011970 94 IVAA-RDIVFALAHSGVCAAFSRETNR---RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR 169 (474)
Q Consensus 94 i~~s-~~~las~s~dgtiklW~~~tg~---~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~ 169 (474)
|++. +-.++...++..+-+|+..++. +.+-....|...+.++++||++..+|++- .| ..+.+|. .
T Consensus 166 I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d----~d------GrI~vw~-d 234 (792)
T KOG1963|consen 166 IVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGD----SD------GRILVWR-D 234 (792)
T ss_pred EEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEec----cC------CcEEEEe-c
Confidence 4444 3334555667777788877644 11223334666789999999999998754 33 3588887 3
Q ss_pred cC-C-CCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEec
Q 011970 170 RG-K-PDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNR 245 (474)
Q Consensus 170 ~G-~-~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~la~~s~ 245 (474)
-| + -..+..+|.- |-.-+..++|+ +||-+|.||+..+..-+|.+.|++ .+-|+ +..|..+.+||++-+.+..
T Consensus 235 ~~~~~~~~t~t~lHW-H~~~V~~L~fS-~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~- 310 (792)
T KOG1963|consen 235 FGSSDDSETCTLLHW-HHDEVNSLSFS-SDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLV- 310 (792)
T ss_pred cccccccccceEEEe-cccccceeEEe-cCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEE-
Confidence 34 1 1111223332 22346689999 799999999999999999999988 33344 6789999999865443332
Q ss_pred CCCCccEEEEecCCCeEEEEEeecCcc-----------eeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec-----
Q 011970 246 SSSHVPLKILSIEDGTVLKVFYHLLHR-----------NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS----- 309 (474)
Q Consensus 246 ~s~D~tIkLWdi~tG~~L~tl~~h~~~-----------v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l----- 309 (474)
-.|..|.|....+=+...+..|.... ...+.+. |.-..++--+..++||+||+.+.+.+..+
T Consensus 311 -~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id-pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~ 388 (792)
T KOG1963|consen 311 -LEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID-PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDE 388 (792)
T ss_pred -ecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc-CCCCceeecCCCceEEEEeccccceeeeEEEEee
Confidence 34888888877665665555543222 2344444 34466777789999999999987654321
Q ss_pred c------ccCCceEEEEEcCCCcEEEEEc---------CC--cEEEEeCCCc-----EEEEeccCCCCcCCCCeeEEEEC
Q 011970 310 R------TEFMTPSAFIFLYENQLFLTFR---------NR--TVAVWNFRGE-----LVTSFEDHLLWHPDCNTNNIYIT 367 (474)
Q Consensus 310 ~------~h~~~v~sv~Fspdg~llaS~s---------D~--tIklWd~~G~-----ll~tl~gH~~~~~~~~v~svafS 367 (474)
. -+...+.+++++-.|+.++|.- |+ .+|.|-..+. |.+... .+|.++.|-.+.++
T Consensus 389 n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~---~PH~~~~vat~~~~ 465 (792)
T KOG1963|consen 389 NYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKIN---NPHGNAFVATIFLN 465 (792)
T ss_pred cccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEe---cCCCceeEEEEEec
Confidence 1 1234577888888899999852 33 5678987543 222222 23344455556565
Q ss_pred CCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccccccccccccc
Q 011970 368 SDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALE 446 (474)
Q Consensus 368 pDg~-~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 446 (474)
|-.. ..++++. ||.+|||-+..-+-+.+ |. ..|.-...-.++-.
T Consensus 466 ~~rs~~~vta~~-----------dg~~KiW~~~~~~n~~k---~~---------------------s~W~c~~i~sy~k~ 510 (792)
T KOG1963|consen 466 PTRSVRCVTASV-----------DGDFKIWVFTDDSNIYK---KS---------------------SNWTCKAIGSYHKT 510 (792)
T ss_pred CcccceeEEecc-----------CCeEEEEEEecccccCc---Cc---------------------cceEEeeeeccccC
Confidence 5554 6777655 99999998732221111 11 00110000012233
Q ss_pred CEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 447 DITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 447 ~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.+++++||.|| .|.+.|.|++|-+||
T Consensus 511 ~i~a~~fs~dG-slla~s~~~~Itiwd 536 (792)
T KOG1963|consen 511 PITALCFSQDG-SLLAVSFDDTITIWD 536 (792)
T ss_pred cccchhhcCCC-cEEEEecCCEEEEec
Confidence 78999999999 566778899999998
No 202
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.8e-11 Score=130.42 Aligned_cols=235 Identities=11% Similarity=0.072 Sum_probs=149.8
Q ss_pred eEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCc
Q 011970 109 VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWP 188 (474)
Q Consensus 109 tiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~ 188 (474)
.+.++|.. |...+.|.. ..+.+.+..|||||+.|+.++... .. ..+.++++..|+.. .+.... ...
T Consensus 199 ~l~i~d~d-G~~~~~l~~-~~~~~~~p~wSPDG~~La~~s~~~-g~------~~L~~~dl~tg~~~---~lt~~~--g~~ 264 (448)
T PRK04792 199 QLMIADYD-GYNEQMLLR-SPEPLMSPAWSPDGRKLAYVSFEN-RK------AEIFVQDIYTQVRE---KVTSFP--GIN 264 (448)
T ss_pred EEEEEeCC-CCCceEeec-CCCcccCceECCCCCEEEEEEecC-CC------cEEEEEECCCCCeE---EecCCC--CCc
Confidence 55666755 544455553 457789999999999999876422 22 46778888887741 122111 122
Q ss_pred eEEEEeCCCCeEEEE-ecCCCc--EEEeecCCCeEEEEEc-CCcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeEE
Q 011970 189 GFVEFDDVNGKVLTY-SAQDSI--YKVFDLKNYTMLYSIS-DKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVL 263 (474)
Q Consensus 189 ~~V~Fs~~nGk~LaS-~s~D~t--iKlWdl~tg~~l~tl~-~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~L 263 (474)
...+|| |||+.|+. .+.++. |.++|+++++...... ...+.+.+|||++ .++..+.......|.++|+++|+..
T Consensus 265 ~~~~wS-PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 265 GAPRFS-PDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred CCeeEC-CCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 368898 79998876 455664 7777988887533222 2356789999854 5554433233446888899888764
Q ss_pred E-EEeecCcceeEEEEEecCCCeEEEEe-CCCcEE--EEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc--CC--c
Q 011970 264 K-VFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQ--ILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--T 335 (474)
Q Consensus 264 ~-tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIk--IWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~--t 335 (474)
+ ++.+ ......+|+ |++++|+..+ .++..+ ++|+.+++...+..+. ......|+|||+.++-.+ ++ .
T Consensus 344 ~Lt~~g--~~~~~~~~S-pDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~ 418 (448)
T PRK04792 344 RLTFEG--EQNLGGSIT-PDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTR--LDESPSVAPNGTMVIYSTTYQGKQV 418 (448)
T ss_pred EEecCC--CCCcCeeEC-CCCCEEEEEEecCCceEEEEEECCCCCeEEccCCC--CCCCceECCCCCEEEEEEecCCceE
Confidence 4 2332 334567776 6788887764 455444 5788888865443332 223457999999888765 43 3
Q ss_pred EEEEeCCCcEEEEeccCCCCcCCCCeeEEEECC
Q 011970 336 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 368 (474)
Q Consensus 336 IklWd~~G~ll~tl~gH~~~~~~~~v~svafSp 368 (474)
+.+++.+|...+.+..+... +...+|||
T Consensus 419 l~~~~~~G~~~~~l~~~~g~-----~~~p~Wsp 446 (448)
T PRK04792 419 LAAVSIDGRFKARLPAGQGE-----VKSPAWSP 446 (448)
T ss_pred EEEEECCCCceEECcCCCCC-----cCCCccCC
Confidence 66778889888888766543 34566776
No 203
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=3.6e-11 Score=117.22 Aligned_cols=193 Identities=12% Similarity=0.203 Sum_probs=131.7
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe------EEEEEc---------CCcEEEEEEcC--CceEEEEecCC
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT------MLYSIS---------DKHVQEIKISP--GIMLLIFNRSS 247 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~------~l~tl~---------~~~V~~vafSp--g~~la~~s~~s 247 (474)
-+.+..++|. | ..|.||+ ||.||=|--+.-. .+..+. --.|.++-.-| +..+. + +
T Consensus 62 dgpiy~~~f~--d-~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-A---g 133 (325)
T KOG0649|consen 62 DGPIYYLAFH--D-DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-A---G 133 (325)
T ss_pred CCCeeeeeee--h-hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-e---c
Confidence 3445567775 2 3566655 4777777533211 111110 12456666666 44433 3 4
Q ss_pred CCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc---------ccC-CceE
Q 011970 248 SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR---------TEF-MTPS 317 (474)
Q Consensus 248 ~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~---------~h~-~~v~ 317 (474)
+|+.+.-||+|+|+..++|+||++.+-+|.-- ..++++++|++|||+||||.+|++|++++. .|. .|+-
T Consensus 134 GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R-~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig 212 (325)
T KOG0649|consen 134 GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGR-NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG 212 (325)
T ss_pred CCeEEEEEEecCCEEEEEEcCCcceeeeeeec-ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeE
Confidence 58999999999999999999999999999863 347899999999999999999999987642 222 3455
Q ss_pred EEEEcCCCcEEEEEcCCcEEEEeCC-CcEEEEec--cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEE
Q 011970 318 AFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 394 (474)
Q Consensus 318 sv~Fspdg~llaS~sD~tIklWd~~-G~ll~tl~--gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIk 394 (474)
+++- +...|++|.-....||+++ -|+.++|. +| |.-+.| +.+.+++++. -+.|+
T Consensus 213 ala~--~edWlvCGgGp~lslwhLrsse~t~vfpipa~--------v~~v~F--~~d~vl~~G~-----------g~~v~ 269 (325)
T KOG0649|consen 213 ALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFPIPAR--------VHLVDF--VDDCVLIGGE-----------GNHVQ 269 (325)
T ss_pred EEec--cCceEEecCCCceeEEeccCCCceEEEecccc--------eeEeee--ecceEEEecc-----------cccee
Confidence 5543 4557888877788999995 77777664 44 456777 4555666543 67899
Q ss_pred EEeCCCCeEEEEecCC
Q 011970 395 VSSILTGKCLAKINAT 410 (474)
Q Consensus 395 lWdi~tG~cl~tl~gH 410 (474)
-|.+ .|..-+.+..-
T Consensus 270 ~~~l-~Gvl~a~ip~~ 284 (325)
T KOG0649|consen 270 SYTL-NGVLQANIPVE 284 (325)
T ss_pred eeee-ccEEEEeccCC
Confidence 9985 78777766553
No 204
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.48 E-value=1.9e-11 Score=128.49 Aligned_cols=325 Identities=16% Similarity=0.226 Sum_probs=220.3
Q ss_pred ccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCC--Cccceeee---
Q 011970 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASD--NFSSLKCR--- 161 (474)
Q Consensus 89 ~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~--d~s~Lk~~--- 161 (474)
-+|..+.+| |.+||+ ++-.-|.+|.-..+-.+..+. |.+ |+-+-|||+|++|.|=+.-.-. +....+.+
T Consensus 33 ~p~~~~~~SP~G~~l~~-~~~~~V~~~~g~~~~~l~~~~--~~~-V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 33 WPVAYVSESPLGTYLFS-EHAAGVECWGGPSKAKLVRFR--HPD-VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cchhheeecCcchheeh-hhccceEEccccchhheeeee--cCC-ceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 345666666 666665 566678899866654444443 434 8999999999999986532220 11122222
Q ss_pred EEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE----EEEEcCCcEEEEEEcCC
Q 011970 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM----LYSISDKHVQEIKISPG 237 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~----l~tl~~~~V~~vafSpg 237 (474)
...+||+..|.+..++..-....++|| .+.|+ -|.+++|--. ...++|.++ |+.+ .+.+.-..|.+..|||+
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp-~~k~s-~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWP-VLKFS-IDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccc-eeeee-ecchhhhhhc-cCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence 488999999998665443333335665 57898 6788888763 346889997 5553 23444568999999985
Q ss_pred ---ceEEEEecC--CCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEE------e-----CCCcEEEEECC
Q 011970 238 ---IMLLIFNRS--SSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK------Q-----ENENLQILDVR 301 (474)
Q Consensus 238 ---~~la~~s~~--s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~------~-----~D~tIkIWDv~ 301 (474)
..||...+. +.+.+++||.|.-+..|.+-+--.-....+.+. +.|+.|+.- + ...++.|.+++
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~-~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ-VLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe-cCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 345555433 446689999999888876544211122333444 346666642 1 24788999988
Q ss_pred CCceEEeccccCCceEEEEEcCCCcEEEEEc---CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 302 NAELMEVSRTEFMTPSAFIFLYENQLFLTFR---NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 302 tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s---D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
...+ .+..+-.+.|-.++|.|.++.|+.-+ +.++.+.|++|+++..+-... =|.+.|||.+++|+.++.
T Consensus 264 e~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~-------rNT~~fsp~~r~il~agF 335 (561)
T COG5354 264 ERSI-PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQK-------RNTIFFSPHERYILFAGF 335 (561)
T ss_pred cccc-ceeccccccceeeeecccCCceeEEecccccceeecccccceEEecCCcc-------cccccccCcccEEEEecC
Confidence 4443 34335578999999999999998754 889999999999776554322 267999999999999876
Q ss_pred CCCccccccCCCCeEEEEeCCCC-eEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCC
Q 011970 379 AEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER 457 (474)
Q Consensus 379 ~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg 457 (474)
.---|.|-+||.... +|+.++.|-+. +-+.|||||
T Consensus 336 --------~nl~gni~i~~~~~rf~~~~~~~~~n~------------------------------------s~~~wspd~ 371 (561)
T COG5354 336 --------DNLQGNIEIFDPAGRFKVAGAFNGLNT------------------------------------SYCDWSPDG 371 (561)
T ss_pred --------CccccceEEeccCCceEEEEEeecCCc------------------------------------eEeeccCCc
Confidence 223588999998654 34547777552 336899999
Q ss_pred CEEEEEc------CCCcEEEccC
Q 011970 458 NEIYTGN------RHGLVHVWSN 474 (474)
Q Consensus 458 ~~LaSgs------~DgtVklWd~ 474 (474)
+.+.+.- .|..|+|||+
T Consensus 372 qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 372 QFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred eEEEecCCCcccccCcceEEEEe
Confidence 9988763 5899999984
No 205
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.46 E-value=8.4e-13 Score=141.05 Aligned_cols=223 Identities=14% Similarity=0.147 Sum_probs=160.8
Q ss_pred ecCCCcEEEeecC-CCeE----EEEEc-CCcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCe-------EEEEEee
Q 011970 204 SAQDSIYKVFDLK-NYTM----LYSIS-DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGT-------VLKVFYH 268 (474)
Q Consensus 204 ~s~D~tiKlWdl~-tg~~----l~tl~-~~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~-------~L~tl~~ 268 (474)
++.-|.|-|++|. -|++ +-+|. +..|.++.+.| +.+||++ .+|+.|+||.++++- .-+.|..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa---~ddg~i~lWr~~a~gl~e~~~tPe~~lt~ 675 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVA---TDDGQINLWRLTANGLPENEMTPEKILTI 675 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeec---ccCceEEEEEeccCCCCcccCCcceeeec
Confidence 3456889999986 3553 22332 46899999997 7888886 568999999998763 3456788
Q ss_pred cCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-Cc-E
Q 011970 269 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE-L 345 (474)
Q Consensus 269 h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~-l 345 (474)
|...|.++.|.|---+-|++++.|-||+|||+++++....+.||++.|..+||||||+++||-+ |++|++++-+ ++ .
T Consensus 676 h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 676 HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence 9999999999977677888899999999999999999989999999999999999999999999 9999999985 44 4
Q ss_pred EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC--CeEEEEecCCCCCCCCccccCCC
Q 011970 346 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT--GKCLAKINATNCSPKVDDELGSS 423 (474)
Q Consensus 346 l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t--G~cl~tl~gH~~~~~~~~~~~~~ 423 (474)
++.=.|-.+. + ---|.|-=||++++..+. + .++...|-++|.++ +..|.+.-=... |
T Consensus 756 v~Eg~gpvgt-R---gARi~wacdgr~viv~Gf-d------k~SeRQv~~Y~Aq~l~~~pl~t~~lDva-p--------- 814 (1012)
T KOG1445|consen 756 VYEGKGPVGT-R---GARILWACDGRIVIVVGF-D------KSSERQVQMYDAQTLDLRPLYTQVLDVA-P--------- 814 (1012)
T ss_pred cccCCCCccC-c---ceeEEEEecCcEEEEecc-c------ccchhhhhhhhhhhccCCcceeeeeccc-C---------
Confidence 5433333221 1 123556669999887654 1 12245677777643 233333211110 0
Q ss_pred CCCccccccccccccccccccccCEEEEEEcCCCCE-EEEEcCCCcEEEcc
Q 011970 424 STGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE-IYTGNRHGLVHVWS 473 (474)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~-LaSgs~DgtVklWd 473 (474)
.+.=-.|++|... ++||-.|.+|.++.
T Consensus 815 -----------------------s~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 815 -----------------------SPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred -----------------------ccccccccCCCceEEEecCCCceEEEEE
Confidence 1111367888876 56888899988764
No 206
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.46 E-value=6.6e-11 Score=137.94 Aligned_cols=247 Identities=16% Similarity=0.222 Sum_probs=168.4
Q ss_pred ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC----------------CcEEEEEEcC-CceEEEEecCC
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----------------KHVQEIKISP-GIMLLIFNRSS 247 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~----------------~~V~~vafSp-g~~la~~s~~s 247 (474)
+.+|..|++++.+|.+.++.+..+.|++||+. |+.+..+.. +.-+.|+|.| ++.|.++..
T Consensus 567 l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt-- 643 (1057)
T PLN02919 567 LKFPGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT-- 643 (1057)
T ss_pred CCCCceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC--
Confidence 57788899986678899999999999999975 555544421 1247899996 566666643
Q ss_pred CCccEEEEecCCCeEEEEEeec-----------------CcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEec
Q 011970 248 SHVPLKILSIEDGTVLKVFYHL-----------------LHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVS 309 (474)
Q Consensus 248 ~D~tIkLWdi~tG~~L~tl~~h-----------------~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l 309 (474)
..+.|+.+|..+|. +.+|.+- ...-+.|+|. ++++.+.++ ..++.|++||..++......
T Consensus 644 ~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d-p~~g~LyVad~~~~~I~v~d~~~g~v~~~~ 721 (1057)
T PLN02919 644 ENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE-PVNEKVYIAMAGQHQIWEYNISDGVTRVFS 721 (1057)
T ss_pred CCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe-cCCCeEEEEECCCCeEEEEECCCCeEEEEe
Confidence 34679999988765 4555321 1123578887 445666555 68999999999888754321
Q ss_pred --------c------ccCCceEEEEEcCCCc-EEEEEc-CCcEEEEeCC-CcEEEE-------------eccCC------
Q 011970 310 --------R------TEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR-GELVTS-------------FEDHL------ 353 (474)
Q Consensus 310 --------~------~h~~~v~sv~Fspdg~-llaS~s-D~tIklWd~~-G~ll~t-------------l~gH~------ 353 (474)
. .....++.++|+|||+ ++++-+ +++|++||++ |+.... +-++.
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 1 1234678899999987 666667 8999999995 542111 10010
Q ss_pred -CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCC--CCCCccccCCCCCCcccc
Q 011970 354 -LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC--SPKVDDELGSSSTGKSKK 430 (474)
Q Consensus 354 -~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~--~~~~~~~~~~~~~~~~~~ 430 (474)
..+ -..|+|+|||++.++-+. +++|++||..+|++. ++-+... ++++
T Consensus 802 ~l~~----P~Gvavd~dG~LYVADs~-----------N~rIrviD~~tg~v~-tiaG~G~~G~~dG-------------- 851 (1057)
T PLN02919 802 LLQH----PLGVLCAKDGQIYVADSY-----------NHKIKKLDPATKRVT-TLAGTGKAGFKDG-------------- 851 (1057)
T ss_pred hccC----CceeeEeCCCcEEEEECC-----------CCEEEEEECCCCeEE-EEeccCCcCCCCC--------------
Confidence 011 158999999999888654 899999999887766 4444221 0000
Q ss_pred ccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 431 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 431 ~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
......+.....|+++|||+.+++-+.+++|++||.
T Consensus 852 --------~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 852 --------KALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred --------cccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 001122336778999999999999999999999984
No 207
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.45 E-value=2.2e-13 Score=141.64 Aligned_cols=197 Identities=16% Similarity=0.186 Sum_probs=166.8
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEc-CCceEEEEecCCCCccEEEEecCCCeEEEE
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKV 265 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~t 265 (474)
|..+.|+ .||..|+-|+.-|-+-.+|..|+++...+. .+.|.+|+|- ..+++|+++. .-+.|+| ..|+.|+-
T Consensus 132 PY~~~yt-rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK----~y~yvYD-~~GtElHC 205 (545)
T KOG1272|consen 132 PYHLDYT-RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQK----KYVYVYD-NNGTELHC 205 (545)
T ss_pred Ceeeeec-CCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhh----ceEEEec-CCCcEEee
Confidence 3467887 799999999999999999999999999887 4789999998 5788888753 5799999 68999998
Q ss_pred EeecCcceeEEEEEecCCCeEEE-EeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-
Q 011970 266 FYHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR- 342 (474)
Q Consensus 266 l~~h~~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~- 342 (474)
++.| .+|..+.|.| .-.||+ +++.|-++--||.+|+++..+......+....-.|-+-.+-.|- +|||.+|...
T Consensus 206 lk~~-~~v~rLeFLP--yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLP--YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred hhhc-Cchhhhcccc--hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence 8866 6799999985 345555 57999999999999999887777777777777789888888887 9999999996
Q ss_pred CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 343 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 343 G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
-+.|..+-.|.+. |++|||.|+|+|+|+.+. |..+||||+..=..+.++..
T Consensus 283 kePLvKiLcH~g~-----V~siAv~~~G~YMaTtG~-----------Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 283 KEPLVKILCHRGP-----VSSIAVDRGGRYMATTGL-----------DRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred cchHHHHHhcCCC-----cceEEECCCCcEEeeccc-----------ccceeEeeeccccccceeec
Confidence 7777777789987 799999999999999876 99999999987665555533
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1.3e-12 Score=134.50 Aligned_cols=191 Identities=12% Similarity=0.096 Sum_probs=142.5
Q ss_pred EEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEE
Q 011970 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKV 212 (474)
Q Consensus 133 ~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKl 212 (474)
..|+|++||..|+++. .| .++|||+.++-+.. |++.+|-+-|..+.|| ||||.|||-+.| ..+|
T Consensus 148 k~vaf~~~gs~latgg----~d------g~lRv~~~Ps~~t~----l~e~~~~~eV~DL~FS-~dgk~lasig~d-~~~V 211 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGG----TD------GTLRVWEWPSMLTI----LEEIAHHAEVKDLDFS-PDGKFLASIGAD-SARV 211 (398)
T ss_pred eEEEEcCCCCEeeecc----cc------ceEEEEecCcchhh----hhhHhhcCccccceeC-CCCcEEEEecCC-ceEE
Confidence 7899999999999965 44 59999998877652 3444455667799998 799999999999 8999
Q ss_pred eecCCCeEEEEEc----CCcEEEEEEcCCc-----eEEEEecCCCCccEEEEecCCC---eEEEEEe--ecCcceeEEEE
Q 011970 213 FDLKNYTMLYSIS----DKHVQEIKISPGI-----MLLIFNRSSSHVPLKILSIEDG---TVLKVFY--HLLHRNKKVDF 278 (474)
Q Consensus 213 Wdl~tg~~l~tl~----~~~V~~vafSpg~-----~la~~s~~s~D~tIkLWdi~tG---~~L~tl~--~h~~~v~~V~F 278 (474)
|++++|.++.+.. +.....+.|+-+. ++|+. ....+.|++|++..- ..|+..+ .-...+.+++.
T Consensus 212 W~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~--~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 212 WSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAAS--QFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV 289 (398)
T ss_pred EEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEe--cCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence 9999998888775 2457789999544 34433 233344555544321 2222221 11135677776
Q ss_pred EecCCCeEEEEeCCCcEEEEECCCCceEEe-ccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC
Q 011970 279 IEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 279 ~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~-l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~ 342 (474)
+ ++|..++.|..||.|-|+++.+-++++. .+.|.+.|+.+.|+||.+.+++-+ |.++.|--+.
T Consensus 290 S-~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 290 S-DDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred c-CCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 5 5677777799999999999999998876 567999999999999999999988 8888877764
No 209
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.44 E-value=3.6e-11 Score=130.87 Aligned_cols=255 Identities=11% Similarity=0.078 Sum_probs=179.3
Q ss_pred EEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE--EEEEc------CCcEEEEE
Q 011970 162 STKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS------DKHVQEIK 233 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~--l~tl~------~~~V~~va 233 (474)
.+-||+++.---. ...|.. ..-+..++|+|-+..+||.|..+|+|=+||+..+.. ...++ ...|..|.
T Consensus 223 ~~~vW~~~~p~~P--e~~~~~--~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 223 VLLVWSLKNPNTP--ELVLES--PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred eEEEEecCCCCCc--eEEEec--CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 5778888655211 112332 334557899988899999999999999999986654 22222 34677766
Q ss_pred EcC---CceEEEEecCCCCccEEEEecCC------CeEEEEEe------ecCcceeEEEEEecCCCeEEEEeCCCcEEE-
Q 011970 234 ISP---GIMLLIFNRSSSHVPLKILSIED------GTVLKVFY------HLLHRNKKVDFIEQFNEKLLVKQENENLQI- 297 (474)
Q Consensus 234 fSp---g~~la~~s~~s~D~tIkLWdi~t------G~~L~tl~------~h~~~v~~V~F~~~~~~~ll~~~~D~tIkI- 297 (474)
+-. +--+++. +.|+.|+.|++.. +.++.+.. .-...+..+.|.+-+...+++|.++|.|.-
T Consensus 299 W~~~~~~~~f~s~---ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~ 375 (555)
T KOG1587|consen 299 WLQNEHNTEFFSL---SSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKG 375 (555)
T ss_pred EeccCCCCceEEE---ecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEE
Confidence 662 3345554 4489999998753 22222222 123456899998877889999999999976
Q ss_pred --EECCCCc-----eEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEEC
Q 011970 298 --LDVRNAE-----LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYIT 367 (474)
Q Consensus 298 --WDv~tg~-----~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafS 367 (474)
++.+.+. .+.....|-+.|+++.++|-+..+..++ |-+||||.-. -..+..++.|... |.++++|
T Consensus 376 ~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~-----v~~vaWS 450 (555)
T KOG1587|consen 376 CRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDY-----VTDVAWS 450 (555)
T ss_pred eccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccce-----eeeeEEc
Confidence 3444333 2335677889999999999887766666 9999999964 5567788888775 6899999
Q ss_pred CCC-CEEEEEecCCCccccccCCCCeEEEEeCCCCeE--EEEecCCCCCCCCccccCCCCCCcccccccccccccccccc
Q 011970 368 SDQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKC--LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEA 444 (474)
Q Consensus 368 pDg-~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c--l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (474)
|-- -.+|++.. ||.|.|||+..-.+ +.+.+-+.
T Consensus 451 ptrpavF~~~d~-----------~G~l~iWDLl~~~~~Pv~s~~~~~--------------------------------- 486 (555)
T KOG1587|consen 451 PTRPAVFATVDG-----------DGNLDIWDLLQDDEEPVLSQKVCS--------------------------------- 486 (555)
T ss_pred CcCceEEEEEcC-----------CCceehhhhhccccCCcccccccc---------------------------------
Confidence 975 45555543 99999999864332 22222221
Q ss_pred ccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 445 LEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 445 l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
...+-+.++++|+.|+.|...|++++|+
T Consensus 487 -~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 487 -PALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred -cccceeecCCCCcEEEEecCCCcEEEEE
Confidence 1566788999999999999999999986
No 210
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=4.7e-11 Score=125.39 Aligned_cols=205 Identities=10% Similarity=0.073 Sum_probs=135.3
Q ss_pred CceEEEEeCCCCeEEEEecCC---CcEEEeecCCCeEEEEEc-CCcEEEEEEcCC-ceEEEEecCCCCccEEEEecCCCe
Q 011970 187 WPGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSIS-DKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGT 261 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D---~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~ 261 (474)
.+.+.+|| |||+.||+.+.+ ..|.+||+.+|+...... ...+.+.+|||+ ..|+......++..|.+||+++|+
T Consensus 200 ~~~~p~wS-pDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~ 278 (430)
T PRK00178 200 PILSPRWS-PDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ 278 (430)
T ss_pred ceeeeeEC-CCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 34578998 799999987754 368899999987543222 234567999985 456544333334468999999987
Q ss_pred EEEEEeecCcceeEEEEEecCCCeEEEEe-CC--CcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc--CC--
Q 011970 262 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-EN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR-- 334 (474)
Q Consensus 262 ~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D--~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~-- 334 (474)
.. .+..+......+.|+ |++.+++..+ .+ ..|.++|+.+++..+.... ........|||||+.++-.+ ++
T Consensus 279 ~~-~lt~~~~~~~~~~~s-pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~ 355 (430)
T PRK00178 279 LS-RVTNHPAIDTEPFWG-KDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDGNF 355 (430)
T ss_pred eE-EcccCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCCce
Confidence 64 355444456677887 6788888765 33 3577778888886554221 12233567999999998765 33
Q ss_pred cEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 335 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 335 tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
.|.+||+. |+. +.+.. ... .....|+|||+.|+-.+. .+....|.+.++ +|+..+.|..+.
T Consensus 356 ~l~~~dl~tg~~-~~lt~-~~~-----~~~p~~spdg~~i~~~~~--------~~g~~~l~~~~~-~g~~~~~l~~~~ 417 (430)
T PRK00178 356 HVAAQDLQRGSV-RILTD-TSL-----DESPSVAPNGTMLIYATR--------QQGRGVLMLVSI-NGRVRLPLPTAQ 417 (430)
T ss_pred EEEEEECCCCCE-EEccC-CCC-----CCCceECCCCCEEEEEEe--------cCCceEEEEEEC-CCCceEECcCCC
Confidence 57889986 554 44432 222 135689999999997764 122355778886 677666676543
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.43 E-value=2.7e-11 Score=137.11 Aligned_cols=259 Identities=13% Similarity=0.100 Sum_probs=169.3
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecCC-----C--eE--EEEEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEe
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-----Y--TM--LYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILS 256 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t-----g--~~--l~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWd 256 (474)
.+..++-+++++-+++|||.|||||+||+.. + ++ .|...+..|..|.+.+ +..+|.+ +.|+.|++.+
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~---t~DG~v~~~~ 1126 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS---TKDGSVRVLR 1126 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE---cCCCeEEEEE
Confidence 3446777778889999999999999999752 1 23 3333467899999996 7777776 5589999998
Q ss_pred cCC--Ce-----EEEEEeec--CcceeEEEEEecCCC-eEEEEeCCCcEEEEECCCCceEEecc--ccCCceEEEEEcCC
Q 011970 257 IED--GT-----VLKVFYHL--LHRNKKVDFIEQFNE-KLLVKQENENLQILDVRNAELMEVSR--TEFMTPSAFIFLYE 324 (474)
Q Consensus 257 i~t--G~-----~L~tl~~h--~~~v~~V~F~~~~~~-~ll~~~~D~tIkIWDv~tg~~~~~l~--~h~~~v~sv~Fspd 324 (474)
+.. +. +....+.+ ..-+.--+|...... .++.+-..+-|-+||+++..-+.+++ -..+.|++++.+|.
T Consensus 1127 id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~ 1206 (1431)
T KOG1240|consen 1127 IDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPW 1206 (1431)
T ss_pred ccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCC
Confidence 865 21 11111111 111122222211223 34445678899999999876544432 23468999999999
Q ss_pred CcEEEEEc-CCcEEEEeCC-CcEEEEecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 011970 325 NQLFLTFR-NRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 401 (474)
Q Consensus 325 g~llaS~s-D~tIklWd~~-G~ll~tl~g-H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG 401 (474)
++.++.|. -|.+-+||++ +.++.+++- |..++ ..|+-.-+.|....+++++. +.-+-|-+||+.+|
T Consensus 1207 ~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i--~~v~~~~~~~~~S~~vs~~~---------~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1207 CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPI--RHVWLCPTYPQESVSVSAGS---------SSNNEVSTWNMETG 1275 (1431)
T ss_pred ceEEEEecCCceEEEEEeecCceeecccCcccCCc--ceEEeeccCCCCceEEEecc---------cCCCceeeeecccC
Confidence 99999998 9999999998 999887762 22221 11333334455567777654 13678999999999
Q ss_pred eEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 402 KCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 402 ~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|-.+|-..+.-|..-++.++.. +..+..+..+ ...+-.-+..+++|+.|..||.||.
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~--------------~~kp~~~~~~-~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSND--------------ARKPDSLAGI-SCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred cceEEEEcCCCCcchhhhccccc--------------CCCCCcccce-eeecccCCceeeecCCccceeeccC
Confidence 99999987643233223322221 1112222334 4556666668999999999999983
No 212
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=2.9e-11 Score=135.23 Aligned_cols=275 Identities=12% Similarity=0.129 Sum_probs=188.0
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecC--CCceEEEEEE-eeCC-CEEEEEEeecCCCccceeeeEEEEeEe-ccC-
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVS--PDEVIRSLFY-NKNN-DSLITVSVYASDNFSSLKCRSTKIEYI-RRG- 171 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~--~~~~i~sv~f-spdg-~~Lis~S~~~s~d~s~Lk~~~~~iw~i-~~G- 171 (474)
...|+++.+.-+|++||.+.|+++..+..+ ....|..+-| |-+. .+|+++| .| ..||||.- ..+
T Consensus 1076 ~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas----~d------GvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTAS----SD------GVIRIWKDYADKW 1145 (1387)
T ss_pred CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeec----cC------ceEEEeccccccc
Confidence 788888888889999999999987644321 2234666655 5444 4567755 55 69999964 332
Q ss_pred -CCCCccceee--------eccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC---CcEEEEEEc-C-C
Q 011970 172 -KPDSGFALFE--------SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKIS-P-G 237 (474)
Q Consensus 172 -~~~~~~~lf~--------~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~---~~V~~vafS-p-g 237 (474)
++ .=..-|. ....+ --+++-..+|.+|++|. =+.|||||+..-++...+.- .-|.++.-+ + |
T Consensus 1146 ~~~-eLVTaw~~Ls~~~~~~r~~~--~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1146 KKP-ELVTAWSSLSDQLPGARGTG--LVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred CCc-eeEEeeccccccCccCCCCC--eeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 21 0001111 11111 11455545687776664 78999999988778777762 346665555 3 6
Q ss_pred ceEEEEecCCCCccEEEEecCCCe---EEEEEeecCcc--eeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec--c
Q 011970 238 IMLLIFNRSSSHVPLKILSIEDGT---VLKVFYHLLHR--NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS--R 310 (474)
Q Consensus 238 ~~la~~s~~s~D~tIkLWdi~tG~---~L~tl~~h~~~--v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l--~ 310 (474)
+++|++- .|+.|+++|.+.-. .+...+.|+.. |..+.|-++.-+.|++++.||.|++||++.......+ .
T Consensus 1222 n~i~AGf---aDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv 1298 (1387)
T KOG1517|consen 1222 NIIAAGF---ADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIV 1298 (1387)
T ss_pred ceEEEee---cCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceee
Confidence 7777763 38999999986533 34566677777 8888887544457999999999999999985322211 2
Q ss_pred ccC--C-ceEEEEEcCCCcEEEEEcCCcEEEEeCCCcEEEEeccCCCCc--CCCCeeEEEECCCCCEEEEEecCCCcccc
Q 011970 311 TEF--M-TPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWH--PDCNTNNIYITSDQDLIISYCKAEPEDQW 385 (474)
Q Consensus 311 ~h~--~-~v~sv~Fspdg~llaS~sD~tIklWd~~G~ll~tl~gH~~~~--~~~~v~svafSpDg~~LaS~s~~~~~~~~ 385 (474)
.|- + ..+++...++-.++|||+-+.||||++.|+.+..+.-+.... +-..+.+++|+|-.-+||.|+.
T Consensus 1299 ~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~------- 1371 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSA------- 1371 (1387)
T ss_pred eccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccC-------
Confidence 222 3 478888899999999999899999999999988777543310 0112578999999999998865
Q ss_pred ccCCCCeEEEEeCCC
Q 011970 386 MEGSAGSINVSSILT 400 (474)
Q Consensus 386 ~~s~DgtIklWdi~t 400 (474)
|.+|.|+....
T Consensus 1372 ----Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1372 ----DSTVSIYSCEK 1382 (1387)
T ss_pred ----CceEEEeecCC
Confidence 99999997543
No 213
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.42 E-value=8e-10 Score=113.87 Aligned_cols=270 Identities=14% Similarity=0.110 Sum_probs=168.5
Q ss_pred EeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC
Q 011970 95 VAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (474)
Q Consensus 95 ~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~ 174 (474)
+..++.|+.++.+|.+..+|..||+.+-..+. ......+++. ++..++.++ .+ ..+..+|..+|+.
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~-~~~~~~~p~v--~~~~v~v~~----~~------g~l~ald~~tG~~- 127 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDL-DERLSGGVGA--DGGLVFVGT----EK------GEVIALDAEDGKE- 127 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecC-CCCcccceEE--cCCEEEEEc----CC------CEEEEEECCCCcE-
Confidence 44588999999999999999999998866554 2232233333 455565533 33 4667778788986
Q ss_pred CccceeeeccccCce-EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCC-cEEEEE--EcC---CceEEEEecCC
Q 011970 175 SGFALFESESLKWPG-FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-HVQEIK--ISP---GIMLLIFNRSS 247 (474)
Q Consensus 175 ~~~~lf~~~~~~~~~-~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~-~V~~va--fSp---g~~la~~s~~s 247 (474)
+|+......+. ..... ++++++ ++.|+.+..||+++|+.+...... ....+. -+| ++.++.. .
T Consensus 128 ----~W~~~~~~~~~~~p~v~--~~~v~v-~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~---~ 197 (377)
T TIGR03300 128 ----LWRAKLSSEVLSPPLVA--NGLVVV-RTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVG---F 197 (377)
T ss_pred ----eeeeccCceeecCCEEE--CCEEEE-ECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEE---C
Confidence 34431101000 11222 455444 567999999999999998877532 211111 112 4455443 3
Q ss_pred CCccEEEEecCCCeEEEEEeecCc-------ce----eEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCce
Q 011970 248 SHVPLKILSIEDGTVLKVFYHLLH-------RN----KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTP 316 (474)
Q Consensus 248 ~D~tIkLWdi~tG~~L~tl~~h~~-------~v----~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v 316 (474)
.++.+.-+|+++|+.+-+...... +. .+... .++.+.+++.++.+..||.++|+.+-..... ..
T Consensus 198 ~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~ 272 (377)
T TIGR03300 198 AGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SY 272 (377)
T ss_pred CCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--Cc
Confidence 357899999999998866541100 00 11111 2678888889999999999999876543311 11
Q ss_pred EEEEEcCCCcEEEEEcCCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 011970 317 SAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 395 (474)
Q Consensus 317 ~sv~Fspdg~llaS~sD~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIkl 395 (474)
...+. .++++++...|+.|..+|. +|+.+-..+.-.... ..+..+ .|..|+.++. ||.|.+
T Consensus 273 ~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~----~ssp~i--~g~~l~~~~~-----------~G~l~~ 334 (377)
T TIGR03300 273 QGPAV-DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQ----LTAPAV--VGGYLVVGDF-----------EGYLHW 334 (377)
T ss_pred cCceE-eCCEEEEECCCCeEEEEECCCCcEEEccccccCCc----cccCEE--ECCEEEEEeC-----------CCEEEE
Confidence 12221 3555555545999999999 599886553211111 112222 4667777765 999999
Q ss_pred EeCCCCeEEEEecCCC
Q 011970 396 SSILTGKCLAKINATN 411 (474)
Q Consensus 396 Wdi~tG~cl~tl~gH~ 411 (474)
+|..+|+.+.+++.+.
T Consensus 335 ~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 335 LSREDGSFVARLKTDG 350 (377)
T ss_pred EECCCCCEEEEEEcCC
Confidence 9999999999998765
No 214
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=3.1e-11 Score=128.57 Aligned_cols=203 Identities=10% Similarity=0.113 Sum_probs=131.8
Q ss_pred ceEEEEeCCCCeEEEEecCCC---cEEEeecCCCeEEEEEc-CCcEEEEEEcCC-ceEEEEecCCCCccEEEEecCCCeE
Q 011970 188 PGFVEFDDVNGKVLTYSAQDS---IYKVFDLKNYTMLYSIS-DKHVQEIKISPG-IMLLIFNRSSSHVPLKILSIEDGTV 262 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~---tiKlWdl~tg~~l~tl~-~~~V~~vafSpg-~~la~~s~~s~D~tIkLWdi~tG~~ 262 (474)
+.+..|| |||+.|++.+.+. .|.+||+.+|+...... .....+.+|||+ ..|+......+...|.++|+++|+.
T Consensus 220 ~~~p~wS-PDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 220 LMSPAWS-PDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL 298 (448)
T ss_pred ccCceEC-CCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe
Confidence 4468998 7999999876532 58888999887532211 233457899984 4566543333333588899998875
Q ss_pred EEEEeecCcceeEEEEEecCCCeEEEEe-CCC--cEEEEECCCCceEEec-cccCCceEEEEEcCCCcEEEEEc--CCcE
Q 011970 263 LKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNAELMEVS-RTEFMTPSAFIFLYENQLFLTFR--NRTV 336 (474)
Q Consensus 263 L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~--tIkIWDv~tg~~~~~l-~~h~~~v~sv~Fspdg~llaS~s--D~tI 336 (474)
. .+..+......++|+ |++.+|+..+ .++ .|.++|+.+++..+.. .++ .....+|+|||+.|+..+ ++..
T Consensus 299 ~-~lt~~~~~~~~p~wS-pDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~--~~~~~~~SpDG~~l~~~~~~~g~~ 374 (448)
T PRK04792 299 T-RITRHRAIDTEPSWH-PDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE--QNLGGSITPDGRSMIMVNRTNGKF 374 (448)
T ss_pred E-ECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC--CCcCeeECCCCCEEEEEEecCCce
Confidence 4 444444456778887 6788887765 344 4556688888866542 333 234568999999987765 4544
Q ss_pred EE--EeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 337 AV--WNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 337 kl--Wd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
+| +|+. |+. +.+.... . ..+..|+|||+.|+-.+. .+....|.++|. +|+..+.+..+.
T Consensus 375 ~I~~~dl~~g~~-~~lt~~~-~-----d~~ps~spdG~~I~~~~~--------~~g~~~l~~~~~-~G~~~~~l~~~~ 436 (448)
T PRK04792 375 NIARQDLETGAM-QVLTSTR-L-----DESPSVAPNGTMVIYSTT--------YQGKQVLAAVSI-DGRFKARLPAGQ 436 (448)
T ss_pred EEEEEECCCCCe-EEccCCC-C-----CCCceECCCCCEEEEEEe--------cCCceEEEEEEC-CCCceEECcCCC
Confidence 44 6775 554 4444331 1 134579999999987654 111345888886 888888887665
No 215
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.41 E-value=7.6e-12 Score=139.78 Aligned_cols=265 Identities=11% Similarity=0.054 Sum_probs=183.5
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~ 177 (474)
.++|.+++ ---+.+++...+..|.-+.+.+-..+. .+.|+..+ ++..-++..+...+..++....+
T Consensus 17 ~~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l---------~~~~~v~~~~~~~v~~~~~~~~~ 82 (967)
T KOG0974|consen 17 SDYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKL---------LSGKIVTCAKSDEVYVKEASNQI 82 (967)
T ss_pred cceeeecC-CCceEEeeCCchhHhhhhhhhcccccc----ccccccee---------ccceEEEEEeecceeecchhhhh
Confidence 36666654 335778888888888777665544444 33333221 11122223333334444432210
Q ss_pred ceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCc-----EEEEEEcCCceEEEEecCCCCcc
Q 011970 178 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKH-----VQEIKISPGIMLLIFNRSSSHVP 251 (474)
Q Consensus 178 ~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~-----V~~vafSpg~~la~~s~~s~D~t 251 (474)
...-..|+..-.+.. +.+.++-...+..+-+||.+.+..+..+. ++. ..-+-+|+......++ +--+.
T Consensus 83 ---~~~~s~wi~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~g--sv~~~ 156 (967)
T KOG0974|consen 83 ---IERFSDWIFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASG--SVFGE 156 (967)
T ss_pred ---hhhccccccccchhh-hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEec--ccccc
Confidence 011123443444432 34566667778889999999988776654 322 2335556544433332 33577
Q ss_pred EEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEE-eccccCCceEEEEEcCCCcEEEE
Q 011970 252 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME-VSRTEFMTPSAFIFLYENQLFLT 330 (474)
Q Consensus 252 IkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~-~l~~h~~~v~sv~Fspdg~llaS 330 (474)
|-+|+..--+.-.-+.||.+.++++.|+ .++.++++.|+|.++|||++.+++-.. +.=+|+..||.+.|+|. .++|
T Consensus 157 iivW~~~~dn~p~~l~GHeG~iF~i~~s-~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t 233 (967)
T KOG0974|consen 157 IIVWKPHEDNKPIRLKGHEGSIFSIVTS-LDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIIT 233 (967)
T ss_pred EEEEeccccCCcceecccCCceEEEEEc-cCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEE
Confidence 9999986222222478999999999998 568888889999999999999998776 66789999999999999 8999
Q ss_pred Ec-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 331 FR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 331 ~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
++ |-|.++|+.+|+.+..+++|...+ ++.++..++.-.++++.. |++||+||..+
T Consensus 234 ~gedctcrvW~~~~~~l~~y~~h~g~~----iw~~~~~~~~~~~vT~g~-----------Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 234 VGEDCTCRVWGVNGTQLEVYDEHSGKG----IWKIAVPIGVIIKVTGGN-----------DSTLKLWDLNG 289 (967)
T ss_pred eccceEEEEEecccceehhhhhhhhcc----eeEEEEcCCceEEEeecc-----------Ccchhhhhhhc
Confidence 99 999999999999999999999886 899999999999998765 99999999753
No 216
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.40 E-value=1.5e-10 Score=117.90 Aligned_cols=183 Identities=11% Similarity=0.162 Sum_probs=140.8
Q ss_pred EEEEecCCC--cEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeec-CcceeE
Q 011970 200 VLTYSAQDS--IYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL-LHRNKK 275 (474)
Q Consensus 200 ~LaS~s~D~--tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h-~~~v~~ 275 (474)
+||-.+.+. ..|+-+.+.+..+-.+. ...|.+|++.-..+++... ..|.|.||.+=++|+|++.- .+..--
T Consensus 58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~Le-----e~IyIydI~~MklLhTI~t~~~n~~gl 132 (391)
T KOG2110|consen 58 LVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCLE-----ESIYIYDIKDMKLLHTIETTPPNPKGL 132 (391)
T ss_pred eeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEEc-----ccEEEEecccceeehhhhccCCCccce
Confidence 555444444 48999988776443332 4679999999877766652 34999999999999999743 222234
Q ss_pred EEEEecC-CCeEEE-Ee-CCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CC-cEEEEeC-CCcEEEEe
Q 011970 276 VDFIEQF-NEKLLV-KQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR-TVAVWNF-RGELVTSF 349 (474)
Q Consensus 276 V~F~~~~-~~~ll~-~~-~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~-tIklWd~-~G~ll~tl 349 (474)
.+|++.. |-+|+- ++ .-|.|.|||+.+-+...+...|...+-+++|+|+|.+|||+| .| .|||..+ +|+.+..|
T Consensus 133 ~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eF 212 (391)
T KOG2110|consen 133 CALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF 212 (391)
T ss_pred EeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeee
Confidence 5554322 236665 33 679999999999999999999999999999999999999999 66 5799999 59999999
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC
Q 011970 350 EDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG 401 (474)
Q Consensus 350 ~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG 401 (474)
.--... +.+.+++|+||+++|++.|. -+||.|+.+.+-
T Consensus 213 RRG~~~---~~IySL~Fs~ds~~L~~sS~-----------TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 213 RRGTYP---VSIYSLSFSPDSQFLAASSN-----------TETVHIFKLEKV 250 (391)
T ss_pred eCCcee---eEEEEEEECCCCCeEEEecC-----------CCeEEEEEeccc
Confidence 865544 56899999999999998765 899999998543
No 217
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=9.3e-11 Score=124.39 Aligned_cols=215 Identities=10% Similarity=-0.004 Sum_probs=132.9
Q ss_pred cEEEeecCCCeEEE-EEcCCcEEEEEEcCCc-e--EEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCC
Q 011970 209 IYKVFDLKNYTMLY-SISDKHVQEIKISPGI-M--LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE 284 (474)
Q Consensus 209 tiKlWdl~tg~~l~-tl~~~~V~~vafSpg~-~--la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~ 284 (474)
.|-+.|...++... |-....+.+-+|||++ . ++..+...+...|.+.++.+|+..+ +....+......|+ |||.
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wS-PDG~ 243 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFS-PRKK 243 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEEC-CCCC
Confidence 45555665554322 2223456788999964 3 2223322333458888998886433 22223445678887 7888
Q ss_pred eEEEEe-C----CCcEEEEECCC---CceEEeccccCCceEEEEEcCCCcEEEEEc--CCcEEEEeC--C--CcEEEEec
Q 011970 285 KLLVKQ-E----NENLQILDVRN---AELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF--R--GELVTSFE 350 (474)
Q Consensus 285 ~ll~~~-~----D~tIkIWDv~t---g~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~tIklWd~--~--G~ll~tl~ 350 (474)
+|+..+ . |-.+++||+.+ ++..++..++.....+.+|||||+.|+..+ ++..+||.+ + |...+.+.
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt 323 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT 323 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence 888754 2 34456688876 344555544444456789999999877655 677777754 3 34445555
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccc
Q 011970 351 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 430 (474)
Q Consensus 351 gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~ 430 (474)
.+... +....|||||+.|+..+.. .....|.+||+.+|++.. |.....
T Consensus 324 ~~~~~-----~~~p~wSPDG~~Laf~~~~--------~g~~~I~v~dl~~g~~~~-Lt~~~~------------------ 371 (428)
T PRK01029 324 KKYRN-----SSCPAWSPDGKKIAFCSVI--------KGVRQICVYDLATGRDYQ-LTTSPE------------------ 371 (428)
T ss_pred cCCCC-----ccceeECCCCCEEEEEEcC--------CCCcEEEEEECCCCCeEE-ccCCCC------------------
Confidence 44433 3578899999999976541 124579999999988743 432221
Q ss_pred ccccccccccccccccCEEEEEEcCCCCEEE-EEcCCC--cEEEcc
Q 011970 431 LNKSSYIRSTVGEALEDITSLFYDEERNEIY-TGNRHG--LVHVWS 473 (474)
Q Consensus 431 ~~~~~~~~~~~~~~l~~V~slafSpDg~~La-Sgs~Dg--tVklWd 473 (474)
.+.+..|+|||+.|+ ++..++ .|.+||
T Consensus 372 ----------------~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 372 ----------------NKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred ----------------CccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 456689999999887 444333 455554
No 218
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.39 E-value=3.6e-10 Score=131.80 Aligned_cols=243 Identities=12% Similarity=0.185 Sum_probs=158.3
Q ss_pred EEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccc----------eeeeccccCceEEEEeCCCCe-EE
Q 011970 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA----------LFESESLKWPGFVEFDDVNGK-VL 201 (474)
Q Consensus 133 ~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~----------lf~~~~~~~~~~V~Fs~~nGk-~L 201 (474)
..|++++++..|..+ +. .+ +.|.++|. .|+....+. .+....+..|..|+|+ ++|. +.
T Consensus 571 ~gvavd~~~g~lyVa--Ds-~n------~rI~v~d~-~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd-~~gn~LY 639 (1057)
T PLN02919 571 GKLAIDLLNNRLFIS--DS-NH------NRIVVTDL-DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN-AKKNLLY 639 (1057)
T ss_pred ceEEEECCCCeEEEE--EC-CC------CeEEEEeC-CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEe-CCCCEEE
Confidence 468888864434332 22 33 56777773 455311000 0112245678899998 5655 45
Q ss_pred EEecCCCcEEEeecCCCeEEEEEcC-------------------CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCe
Q 011970 202 TYSAQDSIYKVFDLKNYTMLYSISD-------------------KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGT 261 (474)
Q Consensus 202 aS~s~D~tiKlWdl~tg~~l~tl~~-------------------~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~ 261 (474)
++....+.|+++|+.++. +.++.+ +.=+.|+|+| ++.+.++. .+++.|++||..+|.
T Consensus 640 VaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad--~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 640 VADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM--AGQHQIWEYNISDGV 716 (1057)
T ss_pred EEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE--CCCCeEEEEECCCCe
Confidence 555666889999988765 333321 1236799998 77776663 456889999998886
Q ss_pred EEEEEeec---------------CcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEecc---------------
Q 011970 262 VLKVFYHL---------------LHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSR--------------- 310 (474)
Q Consensus 262 ~L~tl~~h---------------~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~--------------- 310 (474)
+. ++.+. ...-..|+|+ +++++|.++ +.++.|++||+.++.......
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavs-pdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~ 794 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLS-PDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDH 794 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEe-CCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCC
Confidence 54 33221 1123468887 566766665 688999999999876321110
Q ss_pred ------ccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCC--C--------cCCCCeeEEEECCCCCEE
Q 011970 311 ------TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLL--W--------HPDCNTNNIYITSDQDLI 373 (474)
Q Consensus 311 ------~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~--~--------~~~~~v~svafSpDg~~L 373 (474)
.....+..++|+++|+++++-+ +++|++||.++..+.++.+... . ..+ ....|+++|||+++
T Consensus 795 dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~-~P~GIavd~dG~ly 873 (1057)
T PLN02919 795 DGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLS-EPAGLALGENGRLF 873 (1057)
T ss_pred CCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccC-CceEEEEeCCCCEE
Confidence 1234578999999999999988 9999999997555555544221 0 000 13689999999998
Q ss_pred EEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 374 ISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 374 aS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
++-+. +++|++||+.+++.
T Consensus 874 VaDt~-----------Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 874 VADTN-----------NSLIRYLDLNKGEA 892 (1057)
T ss_pred EEECC-----------CCEEEEEECCCCcc
Confidence 87554 89999999999875
No 219
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.39 E-value=4.6e-11 Score=135.29 Aligned_cols=241 Identities=12% Similarity=0.095 Sum_probs=159.1
Q ss_pred cccccEEEEEee---ccEEEEeeCCCeEEeeeccc-------cceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCc
Q 011970 86 MKRTKVIEIVAA---RDIVFALAHSGVCAAFSRET-------NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNF 155 (474)
Q Consensus 86 ~~~~~V~~i~~s---~~~las~s~dgtiklW~~~t-------g~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~ 155 (474)
-|++.|..++.+ +.++++||.|||||+||... .++.+|+.. ....+..|.+-++|+++|.++ .|
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~~~Av~t----~D- 1119 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGDQFAVST----KD- 1119 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCCeEEEEc----CC-
Confidence 378889999988 57999999999999999652 345556653 456799999999999999865 33
Q ss_pred cceeeeEEEEeEecc--CCC-CCcc----ceeeeccccCceEEEEeCCCCe-EEEEecCCCcEEEeecCCCeEEEEEc--
Q 011970 156 SSLKCRSTKIEYIRR--GKP-DSGF----ALFESESLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS-- 225 (474)
Q Consensus 156 s~Lk~~~~~iw~i~~--G~~-~~~~----~lf~~~~~~~~~~V~Fs~~nGk-~LaS~s~D~tiKlWdl~tg~~l~tl~-- 225 (474)
+.+.+-.|.. +.. ...+ .+-..+. .+.--+|....+. .|+++..-+-|-.||+.+-.-+.+++
T Consensus 1120 -----G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~--vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1120 -----GSVRVLRIDHYNVSKRVATQVRIPNLKKDGV--VVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred -----CeEEEEEccccccccceeeeeecccccCCCc--eEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 3555555433 111 0000 0111111 1112244433455 79999999999999986655444543
Q ss_pred --CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEee-cCcceeEEEEEe--cCCCeEEEE-e-CCCcEEE
Q 011970 226 --DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH-LLHRNKKVDFIE--QFNEKLLVK-Q-ENENLQI 297 (474)
Q Consensus 226 --~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~-h~~~v~~V~F~~--~~~~~ll~~-~-~D~tIkI 297 (474)
.+.|.+++++| +.+++++.+ -+.+-+||++=+.++....+ +..++..|...+ +.+...+++ + ..+-|-+
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts---~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTS---RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred ccccceeEEEecCCceEEEEecC---CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 46799999999 777777743 47899999998888877663 335566655543 323455554 4 7899999
Q ss_pred EECCCCceEEeccccCC-------------------ceEEEEEcCCCcEEEEEc-CCcEEEEeCC
Q 011970 298 LDVRNAELMEVSRTEFM-------------------TPSAFIFLYENQLFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 298 WDv~tg~~~~~l~~h~~-------------------~v~sv~Fspdg~llaS~s-D~tIklWd~~ 342 (474)
||+.+|.|..++..-.. ......+..-+..+++|+ |..|+.||..
T Consensus 1270 wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred eecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 99999998877643311 111122333345566666 9999999985
No 220
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.37 E-value=2.8e-11 Score=127.75 Aligned_cols=253 Identities=13% Similarity=0.157 Sum_probs=159.5
Q ss_pred cccccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEE--------eeCCCEEEEEEeecCCCc
Q 011970 86 MKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFY--------NKNNDSLITVSVYASDNF 155 (474)
Q Consensus 86 ~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~f--------spdg~~Lis~S~~~s~d~ 155 (474)
|+...|..+..+ .+++++.+ |..+-+|+-.+......++- +++.|...-+ -...++++.+|.||
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~-p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DG---- 85 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKL-PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDG---- 85 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhC-CcccCCccccccccccCCCCCcceEEEEcCCc----
Confidence 455666677777 55555555 44555554444544444443 3343433222 12244555555333
Q ss_pred cceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEE
Q 011970 156 SSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIK 233 (474)
Q Consensus 156 s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~va 233 (474)
...|-. +.|+...... .|-+.+-+-.++ |||.-|.+++.||.||+|. .+|-+..++- ...|.+++
T Consensus 86 ------kf~il~-k~~rVE~sv~----AH~~A~~~gRW~-~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 86 ------RFVILN-KSARVERSIS----AHAAAISSGRWS-PDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred ------eEEEec-ccchhhhhhh----hhhhhhhhcccC-CCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence 222222 4555422211 123333344676 7999999999999999998 5666555664 35799999
Q ss_pred EcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccC
Q 011970 234 ISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF 313 (474)
Q Consensus 234 fSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~ 313 (474)
+-|+.--+.+. .+.+..||=.-... +.+ ..+.|.+-|.+++|+++ ++.++++++|-..|||| ..|..+-+...|.
T Consensus 153 W~p~S~~vl~c-~g~h~~IKpL~~n~-k~i-~WkAHDGiiL~~~W~~~-s~lI~sgGED~kfKvWD-~~G~~Lf~S~~~e 227 (737)
T KOG1524|consen 153 WAPNSNSIVFC-QGGHISIKPLAANS-KII-RWRAHDGLVLSLSWSTQ-SNIIASGGEDFRFKIWD-AQGANLFTSAAEE 227 (737)
T ss_pred ECCCCCceEEe-cCCeEEEeeccccc-cee-EEeccCcEEEEeecCcc-ccceeecCCceeEEeec-ccCcccccCChhc
Confidence 99843222232 13344555443321 232 34567788999999854 67888899999999999 5577777778899
Q ss_pred CceEEEEEcCCCcEEEEEcCCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 314 MTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 314 ~~v~sv~Fspdg~llaS~sD~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
.++.+++|.|| ++++-+|-+|.++=..+ .+ .|.++++||||..++.|+.
T Consensus 228 y~ITSva~npd-~~~~v~S~nt~R~~~p~----------~G-----SifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 228 YAITSVAFNPE-KDYLLWSYNTARFSSPR----------VG-----SIFNLSWSADGTQATCGTS 276 (737)
T ss_pred cceeeeeeccc-cceeeeeeeeeeecCCC----------cc-----ceEEEEEcCCCceeecccc
Confidence 99999999999 88887776666622211 12 2688999999999998875
No 221
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=3.8e-10 Score=124.61 Aligned_cols=269 Identities=13% Similarity=0.095 Sum_probs=174.7
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCC--eEEEEecCC
Q 011970 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG--KVLTYSAQD 207 (474)
Q Consensus 130 ~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG--k~LaS~s~D 207 (474)
..-.--.||+|++.|+... . ..+.|+...+|++... +. ++...+-.+.+.+..- -++-.++.|
T Consensus 17 ~~~~~avfSnD~k~l~~~~----~-------~~V~VyS~~Tg~~i~~---l~-~~~a~l~s~~~~~~~~~~~~~~~~sl~ 81 (792)
T KOG1963|consen 17 GNKSPAVFSNDAKFLFLCT----G-------NFVKVYSTATGECITS---LE-DHTAPLTSVIVLPSSENANYLIVCSLD 81 (792)
T ss_pred ceecccccccCCcEEEEee----C-------CEEEEEecchHhhhhh---cc-cccCccceeeecCCCccceEEEEEecC
Confidence 3344557899999988743 3 4889999999999652 22 2444455677764333 356689999
Q ss_pred CcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc----eEEEEecCCCCccEEEEe---cCCCeE-----EEEEe-------
Q 011970 208 SIYKVFDLKNYTMLYSIS-DKHVQEIKISPGI----MLLIFNRSSSHVPLKILS---IEDGTV-----LKVFY------- 267 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~----~la~~s~~s~D~tIkLWd---i~tG~~-----L~tl~------- 267 (474)
|+|++||-..+.+++++. +-.|-+..+.|-. ..+..+ ..| .++.. .+.++. +.++.
T Consensus 82 G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s--~~~--~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~ 157 (792)
T KOG1963|consen 82 GTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVS--VED--YSILTTFSKKLSKQSSRFVLATFDSAKGDFL 157 (792)
T ss_pred ccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEee--ccc--ceeeeecccccccceeeeEeeeccccchhhh
Confidence 999999999999999987 3456665555411 111111 111 11111 111111 11111
Q ss_pred -ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceE----EeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC
Q 011970 268 -HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM----EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 341 (474)
Q Consensus 268 -~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~----~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~ 341 (474)
.|.- =..|.+. +. +.+..--.+..+.+|++..+.-. ..-..|+..+..++|||.++.+|++- ||.|.+|.-
T Consensus 158 ~~~~~-~~~I~~~-~~-ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d 234 (792)
T KOG1963|consen 158 KEHQE-PKSIVDN-NS-GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRD 234 (792)
T ss_pred hhhcC-CccEEEc-CC-ceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEec
Confidence 1111 1233332 21 22222235677889999885511 12355777788999999999999998 999999985
Q ss_pred CC-----cEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCC
Q 011970 342 RG-----ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKV 416 (474)
Q Consensus 342 ~G-----~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~ 416 (474)
-| +-.+.|.=|... |++++||+||-+|.||+. .|-.-+|.+.|++ ++|-.-=+
T Consensus 235 ~~~~~~~~t~t~lHWH~~~-----V~~L~fS~~G~~LlSGG~-----------E~VLv~Wq~~T~~--kqfLPRLg---- 292 (792)
T KOG1963|consen 235 FGSSDDSETCTLLHWHHDE-----VNSLSFSSDGAYLLSGGR-----------EGVLVLWQLETGK--KQFLPRLG---- 292 (792)
T ss_pred cccccccccceEEEecccc-----cceeEEecCCceEeeccc-----------ceEEEEEeecCCC--cccccccC----
Confidence 44 123455444443 799999999999999876 8999999999987 34322111
Q ss_pred ccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEE
Q 011970 417 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 471 (474)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVkl 471 (474)
..|..+.+|||+...+.--+|+.|+|
T Consensus 293 -----------------------------s~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 293 -----------------------------SPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred -----------------------------CeeEEEEEcCCCCeEEEEecCceEEE
Confidence 18999999999999888888999887
No 222
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=1.7e-10 Score=112.68 Aligned_cols=198 Identities=12% Similarity=0.028 Sum_probs=134.4
Q ss_pred EEEeCCCCeEEEEecCCCcEEEeecCC---------Ce-EEEEE--cCCcEEEEEEcCCceEEEEecCCCCccEEEEecC
Q 011970 191 VEFDDVNGKVLTYSAQDSIYKVFDLKN---------YT-MLYSI--SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIE 258 (474)
Q Consensus 191 V~Fs~~nGk~LaS~s~D~tiKlWdl~t---------g~-~l~tl--~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~ 258 (474)
-+.+ |-+|+|+.|+.+|+|-+..++. |+ .+.+. |+..|..++|.++ .|+++ +|+-|+=|--.
T Consensus 16 qa~s-p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~-~Lls~----gdG~V~gw~W~ 89 (325)
T KOG0649|consen 16 QAIS-PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD-FLLSG----GDGLVYGWEWN 89 (325)
T ss_pred HhhC-CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh-heeec----cCceEEEeeeh
Confidence 4566 6799999999999999999863 22 12232 3568999999954 44543 36888876542
Q ss_pred CCeE---EEE---Ee--ec-----CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEE-cCC
Q 011970 259 DGTV---LKV---FY--HL-----LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF-LYE 324 (474)
Q Consensus 259 tG~~---L~t---l~--~h-----~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~F-spd 324 (474)
.-.. ++. .. -| ...|.++-.-|+.|. ++.++.|+.+.-||+++|+..++++||++.+-+++- +..
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 2111 111 11 11 134455555444444 444559999999999999999999999999999998 566
Q ss_pred CcEEEEEc-CCcEEEEeC-CCcEEEEeccCCCC---cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 325 NQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLW---HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 325 g~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~---~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
+| ++||+ |||+||||. +++++++++--... -|+..-|--+.--|.++|++|. -..+-||++.
T Consensus 169 ~q-ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg------------Gp~lslwhLr 235 (325)
T KOG0649|consen 169 GQ-ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG------------GPKLSLWHLR 235 (325)
T ss_pred cc-eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC------------CCceeEEecc
Confidence 66 55777 999999999 59999988743221 0000112244455777888764 4678899999
Q ss_pred CCeEEEEec
Q 011970 400 TGKCLAKIN 408 (474)
Q Consensus 400 tG~cl~tl~ 408 (474)
+-+|..+|.
T Consensus 236 sse~t~vfp 244 (325)
T KOG0649|consen 236 SSESTCVFP 244 (325)
T ss_pred CCCceEEEe
Confidence 888777663
No 223
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=6.5e-11 Score=121.33 Aligned_cols=243 Identities=14% Similarity=0.168 Sum_probs=173.4
Q ss_pred ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCC------CeEEEEEc---CCcEEEEEEcCCceEEEEecCCCCccEE
Q 011970 183 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN------YTMLYSIS---DKHVQEIKISPGIMLLIFNRSSSHVPLK 253 (474)
Q Consensus 183 ~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t------g~~l~tl~---~~~V~~vafSpg~~la~~s~~s~D~tIk 253 (474)
+|.+-|..++|| .||+.||||+.|.-++||++.. .+++.... ..+|.+++|.-+.+.+.+ +..+++|-
T Consensus 54 ~H~GCiNAlqFS-~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~S--G~~~~~VI 130 (609)
T KOG4227|consen 54 EHTGCINALQFS-HNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYS--GERWGTVI 130 (609)
T ss_pred hhccccceeeec-cCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEec--CCCcceeE
Confidence 356777889998 6999999999999999999753 33333321 358999999987776655 46789999
Q ss_pred EEecCCCeEEEEEeec--CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc-eEE--eccccCCceEEEEEcCCC-cE
Q 011970 254 ILSIEDGTVLKVFYHL--LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LME--VSRTEFMTPSAFIFLYEN-QL 327 (474)
Q Consensus 254 LWdi~tG~~L~tl~~h--~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~-~~~--~l~~h~~~v~sv~Fspdg-~l 327 (474)
+-||++-+.|..+.+. .+.|..++-+|- +..+++.+.++.|-+||.+... .+. .+..-.....++-|.|.- .|
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 9999999999999853 246777776644 6677778899999999999765 222 122233455678899865 56
Q ss_pred EEEEc-CCcEEEEeCC--CcEEE------Eecc-CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 328 FLTFR-NRTVAVWNFR--GELVT------SFED-HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 328 laS~s-D~tIklWd~~--G~ll~------tl~g-H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
|++.+ -+-+-|||.+ ...|. .|.. .+.| .++-|+|+|..+.+--. -..=-++|
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~------M~~~~~~~G~Q~msiRR-----------~~~P~~~D 272 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEW------MGSLWSPSGNQFMSIRR-----------GKCPLYFD 272 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhh------hheeeCCCCCeehhhhc-----------cCCCEEee
Confidence 67777 8889999974 22221 2221 2334 57889999998887432 33445889
Q ss_pred CCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 398 ILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 398 i~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
+.+.+|..--..|+ |+|+--+ ..+-++.|--|.. ++|||.|=-|++|.+
T Consensus 273 ~~S~R~~V~k~D~N--~~GY~N~-------------------------~T~KS~~F~~D~~-v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 273 FISQRCFVLKSDHN--PNGYCNI-------------------------KTIKSMTFIDDYT-VATGSDHWGIHIWKL 321 (609)
T ss_pred eecccceeEeccCC--CCcceee-------------------------eeeeeeeeeccee-eeccCcccceEEEec
Confidence 98878764434555 3333111 1677889987765 999999999999964
No 224
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.34 E-value=3.8e-11 Score=128.58 Aligned_cols=196 Identities=15% Similarity=0.139 Sum_probs=143.0
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecCCCe--EE----EEEcC--CcEEEEEEcC--CceEEEEecCCCCccEEEEec
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--ML----YSISD--KHVQEIKISP--GIMLLIFNRSSSHVPLKILSI 257 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~--~l----~tl~~--~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi 257 (474)
+..+.|+|-+..+||+||.|..||||.+.-|- .| ..+.. -.|..+.|+| +++|++++ .++++|||+
T Consensus 82 VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a----~g~v~i~D~ 157 (1012)
T KOG1445|consen 82 VTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGA----HGSVYITDI 157 (1012)
T ss_pred eeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEecc----CceEEEEEc
Confidence 33556665556699999999999999997443 22 11122 2478899997 88888764 478999999
Q ss_pred CCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CceEEeccccCCc-eEEEEEcCCCcEEEEEc---
Q 011970 258 EDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRTEFMT-PSAFIFLYENQLFLTFR--- 332 (474)
Q Consensus 258 ~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t-g~~~~~l~~h~~~-v~sv~Fspdg~llaS~s--- 332 (474)
.|++.+..+.+|..-|.+.+|++ ||..|+++..|++|+|+|.+. ++.+++..+|... =+.++|.-+-..|+|.+
T Consensus 158 stqk~~~el~~h~d~vQSa~Wse-DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~ 236 (1012)
T KOG1445|consen 158 STQKTAVELSGHTDKVQSADWSE-DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTT 236 (1012)
T ss_pred ccCceeecccCCchhhhcccccc-CCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhcccch
Confidence 99999999999999999999986 344444467999999999885 7889988888753 33567765444444433
Q ss_pred --CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 011970 333 --NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 402 (474)
Q Consensus 333 --D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~ 402 (474)
-+.|++||.+ |..++|++=.... + |.-=-|.||-.+|+-+++ .+.+|....+...+
T Consensus 237 ~R~reV~~~Dtr~f~~p~~tleld~st--G--vLiPl~DpDt~llfLaGK----------G~~~l~~lE~~d~q 296 (1012)
T KOG1445|consen 237 KRIREVRAYDTRKFGAPVHTLELDSST--G--VLIPLYDPDTRLLFLAGK----------GTNKLFMLEMQDRQ 296 (1012)
T ss_pred hhheeeeeeeccccCCcceeEEeeccc--c--eEeeeecCCCceEEEecC----------CcceEEEEEecCCC
Confidence 4589999994 8888887733321 1 233457899999988776 37788888875443
No 225
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.34 E-value=1.2e-09 Score=114.01 Aligned_cols=284 Identities=9% Similarity=0.024 Sum_probs=172.0
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~ 177 (474)
|.+++..+.||.+.++|+.+++.++++..+ ..-+++++||||++|+.+.... .++.|.|.++.++.+.+
T Consensus 48 gr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i~~s~DG~~~~v~n~~~---------~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 48 GRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGIAVSPDGKYVYVANYEP---------GTVSVIDAETLEPVKTI 116 (369)
T ss_dssp SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEEEE--TTTEEEEEEEET---------TEEEEEETTT--EEEEE
T ss_pred CCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceEEEcCCCCEEEEEecCC---------CceeEeccccccceeec
Confidence 888999999999999999999999999864 3469999999999998765322 47888888887765543
Q ss_pred ceeeec---cccCceEEEEeCCCCeEEEEecCC-CcEEEeecCCCeEE--EEEc-CCcEEEEEEcCCc-eEEEEecCCCC
Q 011970 178 ALFESE---SLKWPGFVEFDDVNGKVLTYSAQD-SIYKVFDLKNYTML--YSIS-DKHVQEIKISPGI-MLLIFNRSSSH 249 (474)
Q Consensus 178 ~lf~~~---~~~~~~~V~Fs~~nGk~LaS~s~D-~tiKlWdl~tg~~l--~tl~-~~~V~~vafSpg~-~la~~s~~s~D 249 (474)
+.-... .-..+..|..+ |.+...+..-.| +.|-+=|..+.+.+ ..+. +..-.+..|+|++ .++++... +
T Consensus 117 ~~~~~~~~~~~~Rv~aIv~s-~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~--s 193 (369)
T PF02239_consen 117 PTGGMPVDGPESRVAAIVAS-PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG--S 193 (369)
T ss_dssp E--EE-TTTS---EEEEEE--SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG--G
T ss_pred ccccccccccCCCceeEEec-CCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccc--c
Confidence 322210 01123456666 456644433333 44444476665533 3443 4567889999855 45554433 4
Q ss_pred ccEEEEecCCCeEEEEEe-e---cCcceeE-------EEEEec-CCCeEEEEeCCCcEEEEECCCCceEEeccccCCceE
Q 011970 250 VPLKILSIEDGTVLKVFY-H---LLHRNKK-------VDFIEQ-FNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPS 317 (474)
Q Consensus 250 ~tIkLWdi~tG~~L~tl~-~---h~~~v~~-------V~F~~~-~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~ 317 (474)
..|-++|.++++....+. + |..+... .-|... .+...++.-....+.+||..+.+.++.+...... -
T Consensus 194 n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-l 272 (369)
T PF02239_consen 194 NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-L 272 (369)
T ss_dssp TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--
T ss_pred ceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-c
Confidence 589999999999887664 1 1111111 111111 1122222222335668999999998887665544 4
Q ss_pred EEEEcCCCcEEEEE---c--CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 011970 318 AFIFLYENQLFLTF---R--NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 391 (474)
Q Consensus 318 sv~Fspdg~llaS~---s--D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg 391 (474)
-+.-+|+++.+... + +++|.|+|.+ -+.+.++...... .+..+.|++||+.+--... ..++
T Consensus 273 Fi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~----~~~h~ef~~dG~~v~vS~~---------~~~~ 339 (369)
T PF02239_consen 273 FIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGK----RVVHMEFNPDGKEVWVSVW---------DGNG 339 (369)
T ss_dssp -EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT------EEEEEE-TTSSEEEEEEE-----------TT
T ss_pred eeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCC----cEeccEECCCCCEEEEEEe---------cCCC
Confidence 55669999999987 3 5799999996 7888888643331 1568999999997765544 2255
Q ss_pred eEEEEeCCCCeEEEEecC
Q 011970 392 SINVSSILTGKCLAKINA 409 (474)
Q Consensus 392 tIklWdi~tG~cl~tl~g 409 (474)
.|.++|..|.+.++.+..
T Consensus 340 ~i~v~D~~Tl~~~~~i~~ 357 (369)
T PF02239_consen 340 AIVVYDAKTLKEKKRIPV 357 (369)
T ss_dssp EEEEEETTTTEEEEEEE-
T ss_pred EEEEEECCCcEEEEEEEe
Confidence 899999999999999983
No 226
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=3.9e-10 Score=119.68 Aligned_cols=202 Identities=10% Similarity=0.086 Sum_probs=125.4
Q ss_pred EEEEeCCCCeE--EEEecC-C--CcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc-eEEEEecC--CCCccEEEEecCCC
Q 011970 190 FVEFDDVNGKV--LTYSAQ-D--SIYKVFDLKNYTMLYSIS-DKHVQEIKISPGI-MLLIFNRS--SSHVPLKILSIEDG 260 (474)
Q Consensus 190 ~V~Fs~~nGk~--LaS~s~-D--~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~-~la~~s~~--s~D~tIkLWdi~tG 260 (474)
+-+|| |||+. +++-|. + ..|-+.|+.+|+...... .......+|||++ .||..+.. ..|..+.+|++.+|
T Consensus 189 sP~wS-PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g 267 (428)
T PRK01029 189 TPTWM-HIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETG 267 (428)
T ss_pred cceEc-cCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccC
Confidence 45898 79875 433332 3 356666888887432221 3345578999855 66554422 22445666888763
Q ss_pred ---eEEEEEeecCcceeEEEEEecCCCeEEEEe-CCCcEEEEEC--CC-CceEEeccccCCceEEEEEcCCCcEEEEEc-
Q 011970 261 ---TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDV--RN-AELMEVSRTEFMTPSAFIFLYENQLFLTFR- 332 (474)
Q Consensus 261 ---~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv--~t-g~~~~~l~~h~~~v~sv~Fspdg~llaS~s- 332 (474)
+..+.+.++......+.|+ |+|.+|+..+ .++..+||.+ .. +...+.+..+...+....|||||+.|+..+
T Consensus 268 ~~g~~~~lt~~~~~~~~~p~wS-PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~ 346 (428)
T PRK01029 268 AIGKPRRLLNEAFGTQGNPSFS-PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSV 346 (428)
T ss_pred CCCcceEeecCCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEc
Confidence 4444443333344677887 7788888765 5777777754 32 233344444445667888999999888664
Q ss_pred -C--CcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe
Q 011970 333 -N--RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 407 (474)
Q Consensus 333 -D--~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 407 (474)
+ ..|.+||+. |++. .+...... +.+..|+|||+.|+-.+. ......|.+||+.+|+.....
T Consensus 347 ~~g~~~I~v~dl~~g~~~-~Lt~~~~~-----~~~p~wSpDG~~L~f~~~--------~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 347 IKGVRQICVYDLATGRDY-QLTTSPEN-----KESPSWAIDSLHLVYSAG--------NSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CCCCcEEEEEECCCCCeE-EccCCCCC-----ccceEECCCCCEEEEEEC--------CCCCceEEEEECCCCCEEEee
Confidence 2 369999996 6654 44433222 467899999998875432 123578999999887764443
No 227
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.32 E-value=2e-11 Score=128.83 Aligned_cols=244 Identities=15% Similarity=0.127 Sum_probs=168.0
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCe-EEEEEcCCcEEEEEEc-C--------CceEEEEecCCCCccEEEEecCC
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDKHVQEIKIS-P--------GIMLLIFNRSSSHVPLKILSIED 259 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~-~l~tl~~~~V~~vafS-p--------g~~la~~s~~s~D~tIkLWdi~t 259 (474)
+|.++ .+...+-+++.+..++-||+.+-. .+..++++.|...-+- | ...++++ ++|+.+.|.+ +.
T Consensus 19 ~v~w~-~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~---s~DGkf~il~-k~ 93 (737)
T KOG1524|consen 19 CVDWS-SNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLIC---SNDGRFVILN-KS 93 (737)
T ss_pred eeccc-ccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEE---cCCceEEEec-cc
Confidence 56666 467677666666666666765433 2233333333322221 1 1245554 5578888888 57
Q ss_pred CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEE
Q 011970 260 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVW 339 (474)
Q Consensus 260 G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklW 339 (474)
|++-+....|.+.+.+-.|+ |+|.-|++.++||.||||. ++|-+..++......|++++|-|+..-++-..-+.+-|=
T Consensus 94 ~rVE~sv~AH~~A~~~gRW~-~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IK 171 (737)
T KOG1524|consen 94 ARVERSISAHAAAISSGRWS-PDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIK 171 (737)
T ss_pred chhhhhhhhhhhhhhhcccC-CCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEe
Confidence 88888888888888888887 7889999999999999999 899888888877789999999999888776654444444
Q ss_pred eCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCC-----
Q 011970 340 NFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS----- 413 (474)
Q Consensus 340 d~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~----- 413 (474)
-+. ..-+-.++.|.+- |.++.++|..++|+||+. |-..|+||- .|+.|.+=..|...
T Consensus 172 pL~~n~k~i~WkAHDGi-----iL~~~W~~~s~lI~sgGE-----------D~kfKvWD~-~G~~Lf~S~~~ey~ITSva 234 (737)
T KOG1524|consen 172 PLAANSKIIRWRAHDGL-----VLSLSWSTQSNIIASGGE-----------DFRFKIWDA-QGANLFTSAAEEYAITSVA 234 (737)
T ss_pred ecccccceeEEeccCcE-----EEEeecCccccceeecCC-----------ceeEEeecc-cCcccccCChhccceeeee
Confidence 443 2223357889886 789999999999999765 999999994 79988887777740
Q ss_pred --CCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcE
Q 011970 414 --PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 469 (474)
Q Consensus 414 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtV 469 (474)
|...++..+-+ +.++.+ -.-..|..++|||||..++.|...|.|
T Consensus 235 ~npd~~~~v~S~n---------t~R~~~---p~~GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 235 FNPEKDYLLWSYN---------TARFSS---PRVGSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred eccccceeeeeee---------eeeecC---CCccceEEEEEcCCCceeeccccCceE
Confidence 11111111000 001100 111278999999999999998888865
No 228
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.31 E-value=1.4e-10 Score=126.29 Aligned_cols=243 Identities=12% Similarity=0.046 Sum_probs=169.7
Q ss_pred ccccEEEEEee---ccEEEEeeCCCeEEeeeccccce-----eeEeecCCCceEEEEEEeeC--CCEEEEEEeecCCCcc
Q 011970 87 KRTKVIEIVAA---RDIVFALAHSGVCAAFSRETNRR-----ICFLNVSPDEVIRSLFYNKN--NDSLITVSVYASDNFS 156 (474)
Q Consensus 87 ~~~~V~~i~~s---~~~las~s~dgtiklW~~~tg~~-----l~~l~g~~~~~i~sv~fspd--g~~Lis~S~~~s~d~s 156 (474)
-++.|..+.|+ ..+||.|+++|.|-+||+..++. ++.+-..|.+.+..+.+.++ +.-++++|.||
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG----- 315 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDG----- 315 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCC-----
Confidence 35789999998 99999999999999999887775 67788889999999999655 44488888544
Q ss_pred ceeeeEEEEeEec------cCCCCCccceeee--ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe----EE---
Q 011970 157 SLKCRSTKIEYIR------RGKPDSGFALFES--ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----ML--- 221 (474)
Q Consensus 157 ~Lk~~~~~iw~i~------~G~~~~~~~lf~~--~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~----~l--- 221 (474)
.+..|+++ .+.+......-.. ....-.-+++|.+-|=....-|+.+|.|--=+-+.++ .+
T Consensus 316 -----~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~ 390 (555)
T KOG1587|consen 316 -----SICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKG 390 (555)
T ss_pred -----cEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccc
Confidence 55666652 2222111000000 0112233578876555667778888888663323222 22
Q ss_pred ---EEEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecC-CCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEE
Q 011970 222 ---YSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQ 296 (474)
Q Consensus 222 ---~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~-tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIk 296 (474)
+..+.+.|..|.++| .-.+..+ ++|-+||||+-. .-..|..+..+...+..|+|+|-....+++.-.||+|.
T Consensus 391 ~~~~~~h~g~v~~v~~nPF~~k~fls---~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~ 467 (555)
T KOG1587|consen 391 HSTFITHIGPVYAVSRNPFYPKNFLS---VGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLD 467 (555)
T ss_pred cccccccCcceEeeecCCCccceeee---eccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCcee
Confidence 233457899999999 4444433 228899999976 55677777777788999999986667777788999999
Q ss_pred EEECCCCce--EEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC
Q 011970 297 ILDVRNAEL--MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 297 IWDv~tg~~--~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~ 342 (474)
|||+....+ +....-+.....-+.|+++|++|+.|. .|+|.+|++.
T Consensus 468 iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 468 IWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred hhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 999986543 222222344445566788899999999 9999999984
No 229
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=5.1e-11 Score=133.26 Aligned_cols=190 Identities=11% Similarity=0.067 Sum_probs=145.0
Q ss_pred CcEEEEEEc-CCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcce-----eEEEEEecCCCeEEEEeCCCcEEEEEC
Q 011970 227 KHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN-----KKVDFIEQFNEKLLVKQENENLQILDV 300 (474)
Q Consensus 227 ~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v-----~~V~F~~~~~~~ll~~~~D~tIkIWDv 300 (474)
+||..-.+. .+..++... .++.+-|||...+..+....+- .+. .-+-++ +..=++++++.=+.|-+|+.
T Consensus 88 ~wi~g~~l~~e~k~i~l~~---~~ns~~i~d~~~~~~~~~i~~~-er~~l~~~~~~g~s-~~~~~i~~gsv~~~iivW~~ 162 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVT---SRNSLLIRDSKNSSVLSKIQSD-ERCTLYSSLIIGDS-AEELYIASGSVFGEIIVWKP 162 (967)
T ss_pred ccccccchhhhcceEEEEE---cCceEEEEecccCceehhcCCC-ceEEEEeEEEEecc-CcEEEEEeccccccEEEEec
Confidence 455544445 355555553 2567888998777766555421 111 111111 11225555678889999998
Q ss_pred CCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEE-EeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 011970 301 RNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYC 377 (474)
Q Consensus 301 ~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~-tl~gH~~~~~~~~v~svafSpDg~~LaS~s 377 (474)
.--+.-.-+.||.+.+.++.||-||++++|.| |++|++|+++ ++.+. +.=||+.. ||.+.|.|+ +|++++
T Consensus 163 ~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR-----vw~~~~~~n--~i~t~g 235 (967)
T KOG0974|consen 163 HEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR-----VWACCFLPN--RIITVG 235 (967)
T ss_pred cccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccce-----eEEEEeccc--eeEEec
Confidence 73222224789999999999999999999999 9999999995 77655 77789987 799999999 999986
Q ss_pred cCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCC
Q 011970 378 KAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER 457 (474)
Q Consensus 378 ~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg 457 (474)
. |.|.|+|+. .|+.+.++.+|.. +.|+.++.+++-
T Consensus 236 e-----------dctcrvW~~-~~~~l~~y~~h~g---------------------------------~~iw~~~~~~~~ 270 (967)
T KOG0974|consen 236 E-----------DCTCRVWGV-NGTQLEVYDEHSG---------------------------------KGIWKIAVPIGV 270 (967)
T ss_pred c-----------ceEEEEEec-ccceehhhhhhhh---------------------------------cceeEEEEcCCc
Confidence 5 999999985 7888999999985 279999999999
Q ss_pred CEEEEEcCCCcEEEcc
Q 011970 458 NEIYTGNRHGLVHVWS 473 (474)
Q Consensus 458 ~~LaSgs~DgtVklWd 473 (474)
.+++|++.|+++|+|+
T Consensus 271 ~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 271 IIKVTGGNDSTLKLWD 286 (967)
T ss_pred eEEEeeccCcchhhhh
Confidence 9999999999999997
No 230
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.31 E-value=1.8e-08 Score=103.70 Aligned_cols=275 Identities=15% Similarity=0.182 Sum_probs=172.0
Q ss_pred EEEeeCC----CeEEeeec--cccce--eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEecc--
Q 011970 101 VFALAHS----GVCAAFSR--ETNRR--ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRR-- 170 (474)
Q Consensus 101 las~s~d----gtiklW~~--~tg~~--l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~-- 170 (474)
++.|++. +.|..|++ ++|+. +..+.. . ..-.-|+++|+++.|-++...+..+ ..+..+.+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~-~-~~Ps~l~~~~~~~~LY~~~e~~~~~------g~v~~~~i~~~~ 73 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAE-G-ENPSWLAVSPDGRRLYVVNEGSGDS------GGVSSYRIDPDT 73 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEE-S-SSECCEEE-TTSSEEEEEETTSSTT------TEEEEEEEETTT
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecC-C-CCCceEEEEeCCCEEEEEEccccCC------CCEEEEEECCCc
Confidence 5666666 78888887 55553 233222 2 2345688999999998876432123 3555555533
Q ss_pred CCCCCccceeee-c-cccCceEEEEeCCCCeEEEEec-CCCcEEEeecCC-CeEEEE---Ec------------CCcEEE
Q 011970 171 GKPDSGFALFES-E-SLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKN-YTMLYS---IS------------DKHVQE 231 (474)
Q Consensus 171 G~~~~~~~lf~~-~-~~~~~~~V~Fs~~nGk~LaS~s-~D~tiKlWdl~t-g~~l~t---l~------------~~~V~~ 231 (474)
|++. +... . .-..|-.|+++ |||++|..+. .+++|-++++.. |.+... +. ......
T Consensus 74 g~L~----~~~~~~~~g~~p~~i~~~-~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~ 148 (345)
T PF10282_consen 74 GTLT----LLNSVPSGGSSPCHIAVD-PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQ 148 (345)
T ss_dssp TEEE----EEEEEEESSSCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEE
T ss_pred ceeE----EeeeeccCCCCcEEEEEe-cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccccee
Confidence 5541 1111 1 13456679998 7999888776 599999999975 664432 21 246789
Q ss_pred EEEcCC-ceEEEEecCCCCccEEEEecCCCe--EE--EEEee-cCcceeEEEEEecCCCeEEEE-eCCCcEEEEECC--C
Q 011970 232 IKISPG-IMLLIFNRSSSHVPLKILSIEDGT--VL--KVFYH-LLHRNKKVDFIEQFNEKLLVK-QENENLQILDVR--N 302 (474)
Q Consensus 232 vafSpg-~~la~~s~~s~D~tIkLWdi~tG~--~L--~tl~~-h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~--t 302 (474)
+.|+|+ ..+++... +. ..|.++++..+. +- ..+.- ....=+-+.|+ |++.++.+. ..+++|-++++. +
T Consensus 149 v~~~pdg~~v~v~dl-G~-D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~-pdg~~~Yv~~e~s~~v~v~~~~~~~ 225 (345)
T PF10282_consen 149 VVFSPDGRFVYVPDL-GA-DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS-PDGKYAYVVNELSNTVSVFDYDPSD 225 (345)
T ss_dssp EEE-TTSSEEEEEET-TT-TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE--TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred EEECCCCCEEEEEec-CC-CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc-CCcCEEEEecCCCCcEEEEeecccC
Confidence 999985 55555543 33 478888887655 32 23331 12334778898 566666665 578999999988 5
Q ss_pred CceE--Ee---ccc---cCCceEEEEEcCCCcEEEEEc--CCcEEEEeCC---CcE--EEEeccCCCCcCCCCeeEEEEC
Q 011970 303 AELM--EV---SRT---EFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR---GEL--VTSFEDHLLWHPDCNTNNIYIT 367 (474)
Q Consensus 303 g~~~--~~---l~~---h~~~v~sv~Fspdg~llaS~s--D~tIklWd~~---G~l--l~tl~gH~~~~~~~~v~svafS 367 (474)
|.+. +. +.. ....+..++++|||++|-.+. +++|-+++++ |++ +..+.-...+ -+.++|+
T Consensus 226 g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~-----Pr~~~~s 300 (345)
T PF10282_consen 226 GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF-----PRHFAFS 300 (345)
T ss_dssp TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS-----EEEEEE-
T ss_pred CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC-----ccEEEEe
Confidence 5542 22 211 123788999999999877665 8899999983 554 2333221111 2789999
Q ss_pred CCCCEEEEEecCCCccccccCCCCeEEEEeC--CCCeEEEE
Q 011970 368 SDQDLIISYCKAEPEDQWMEGSAGSINVSSI--LTGKCLAK 406 (474)
Q Consensus 368 pDg~~LaS~s~~~~~~~~~~s~DgtIklWdi--~tG~cl~t 406 (474)
|||++|+.++. .+++|.++++ .||++..+
T Consensus 301 ~~g~~l~Va~~----------~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 301 PDGRYLYVANQ----------DSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp TTSSEEEEEET----------TTTEEEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEec----------CCCeEEEEEEeCCCCcEEEe
Confidence 99999999875 3788999976 67876544
No 231
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.30 E-value=1.5e-08 Score=105.32 Aligned_cols=270 Identities=11% Similarity=0.094 Sum_probs=169.3
Q ss_pred CeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEee------cCCCccceeeeEEEEeEeccCCCCCccceee
Q 011970 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVY------ASDNFSSLKCRSTKIEYIRRGKPDSGFALFE 181 (474)
Q Consensus 108 gtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~------~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~ 181 (474)
+++.+.|..+++.+.++..+..- +-+ +||||+.|..+..| |.++ ..+.++|+++++..+.+++=.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P--~~~-~spDg~~lyva~~~~~R~~~G~~~------d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP--NPV-VASDGSFFAHASTVYSRIARGKRT------DYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC--cee-ECCCCCEEEEEeccccccccCCCC------CEEEEEECccCcEEeEEccCC
Confidence 89999999999999999875422 234 99999999887642 2233 589999999999866554311
Q ss_pred e-c--cccCceEEEEeCCCCeEEEEec--CCCcEEEeecCCCeEEEEEcC-CcEEEEEEcCCceEEEEecCCCCcc-EEE
Q 011970 182 S-E--SLKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVP-LKI 254 (474)
Q Consensus 182 ~-~--~~~~~~~V~Fs~~nGk~LaS~s--~D~tiKlWdl~tg~~l~tl~~-~~V~~vafSpg~~la~~s~~s~D~t-IkL 254 (474)
. + ....+..++|| |||++|.-.- .+..|-|.|+++++.+.++.- +..+-...+++...+.+ .|+. .++
T Consensus 98 ~p~~~~~~~~~~~~ls-~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~----~Dg~~~~v 172 (352)
T TIGR02658 98 GPRFLVGTYPWMTSLT-PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHC----RDGSLAKV 172 (352)
T ss_pred CchhhccCccceEEEC-CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEe----ecCceEEE
Confidence 1 0 13455578998 7999877443 389999999999999988862 22222333221111111 0111 111
Q ss_pred EecCCCeEE-EE---EeecCcce-eEEEEEecCCCeEEEEeCCCcEEEEECCC-----CceEEecccc-------CCceE
Q 011970 255 LSIEDGTVL-KV---FYHLLHRN-KKVDFIEQFNEKLLVKQENENLQILDVRN-----AELMEVSRTE-------FMTPS 317 (474)
Q Consensus 255 Wdi~tG~~L-~t---l~~h~~~v-~~V~F~~~~~~~ll~~~~D~tIkIWDv~t-----g~~~~~l~~h-------~~~v~ 317 (474)
=.=.+|+.. ++ |.+....+ ....|.+.+|..+.++.+ |+|.+-|+.. .+.+.++... ....-
T Consensus 173 ~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q 251 (352)
T TIGR02658 173 GYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQ 251 (352)
T ss_pred EecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcce
Confidence 111233321 11 11100000 111444335655556666 9999999544 3333332211 11222
Q ss_pred EEEEcCCCcEEEEEc---C--------CcEEEEeCC-CcEEEEec-cCCCCcCCCCeeEEEECCCCC-EEEEEecCCCcc
Q 011970 318 AFIFLYENQLFLTFR---N--------RTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNIYITSDQD-LIISYCKAEPED 383 (474)
Q Consensus 318 sv~Fspdg~llaS~s---D--------~tIklWd~~-G~ll~tl~-gH~~~~~~~~v~svafSpDg~-~LaS~s~~~~~~ 383 (474)
.++++|||+.+-... . +.|.++|.. ++.+..+. |+. +++|+|||||+ +|...+.
T Consensus 252 ~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~-------~~~iavS~Dgkp~lyvtn~----- 319 (352)
T TIGR02658 252 QVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHE-------IDSINVSQDAKPLLYALST----- 319 (352)
T ss_pred eEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCc-------eeeEEECCCCCeEEEEeCC-----
Confidence 389998877766532 2 589999994 99988876 543 57899999999 7776653
Q ss_pred ccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 384 QWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 384 ~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
.+++|-+-|+.+++.++++.+
T Consensus 320 -----~s~~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 320 -----GDKTLYIFDAETGKELSSVNQ 340 (352)
T ss_pred -----CCCcEEEEECcCCeEEeeecc
Confidence 378999999999999999843
No 232
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1e-09 Score=116.60 Aligned_cols=311 Identities=15% Similarity=0.241 Sum_probs=208.6
Q ss_pred EEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCcc----ceeeeEEEEeE
Q 011970 94 IVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFS----SLKCRSTKIEY 167 (474)
Q Consensus 94 i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s----~Lk~~~~~iw~ 167 (474)
+.+| |.+|++- +-+-|.||--+.=.+++-+ +|.+ |.-+.|||+-++|+|=|. .... .-..+.+.|||
T Consensus 216 v~wSP~GTYL~t~-Hk~GI~lWGG~~f~r~~RF--~Hp~-Vq~idfSP~EkYLVT~s~---~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 216 VRWSPKGTYLVTF-HKQGIALWGGESFDRIQRF--YHPG-VQFIDFSPNEKYLVTYSP---EPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred EEecCCceEEEEE-eccceeeecCccHHHHHhc--cCCC-ceeeecCCccceEEEecC---CccccCcccCCCceEEEEE
Confidence 5566 8888876 5555789985543444433 4655 899999999999998543 1100 01337899999
Q ss_pred eccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEE--EEEcCCcEEEEEEcC-CceEEEEe
Q 011970 168 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKHVQEIKISP-GIMLLIFN 244 (474)
Q Consensus 168 i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l--~tl~~~~V~~vafSp-g~~la~~s 244 (474)
|++|.+..+|+.+......|| .+.+| .|+|++|--..| +|-|++...-.++ +++.-..|+...||| +..||--.
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP-~frWS-~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWP-IFRWS-HDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred ccccchhcceeccCCCccccc-eEEec-cCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEc
Confidence 999999998888876667777 46787 699999977664 5889985543222 345557899999999 55555555
Q ss_pred cCCCCc--cEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeC----C------CcEEEEECCCCce-EEeccc
Q 011970 245 RSSSHV--PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE----N------ENLQILDVRNAEL-MEVSRT 311 (474)
Q Consensus 245 ~~s~D~--tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~----D------~tIkIWDv~tg~~-~~~l~~ 311 (474)
+.-.+. .+-|-.+.+++.|++-+-|.=..-.+.+- ..|++|.+.-+ - -++.|.-++..+. +.. ..
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQ-k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~-ve 443 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQ-KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV-VE 443 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccceeeeccEEEec-cCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee-ee
Confidence 544344 37788999999998877332122333332 34566665421 1 2345666655442 222 12
Q ss_pred cCCceEEEEEcCCCcEEEEEc----CCcEEEEeCC-----CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCc
Q 011970 312 EFMTPSAFIFLYENQLFLTFR----NRTVAVWNFR-----GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPE 382 (474)
Q Consensus 312 h~~~v~sv~Fspdg~llaS~s----D~tIklWd~~-----G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~ 382 (474)
-...|-+++|-|.|..|+.-+ -.||..+.++ -+++..|..-. .|.|.|||.|++++.+..
T Consensus 444 lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~-------~N~vfwsPkG~fvvva~l---- 512 (698)
T KOG2314|consen 444 LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKF-------ANTVFWSPKGRFVVVAAL---- 512 (698)
T ss_pred cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccc-------cceEEEcCCCcEEEEEEe----
Confidence 235788899999999998754 3489999884 23677776521 378999999999999876
Q ss_pred cccccCCCCeEEEEeCCCCeEEEEe-cCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE
Q 011970 383 DQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY 461 (474)
Q Consensus 383 ~~~~~s~DgtIklWdi~tG~cl~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~La 461 (474)
.|.-|.+...|..--.|..+- ..|- .-+.+.++|.|++++
T Consensus 513 ----~s~~g~l~F~D~~~a~~k~~~~~eh~-----------------------------------~at~veWDPtGRYvv 553 (698)
T KOG2314|consen 513 ----VSRRGDLEFYDTDYADLKDTASPEHF-----------------------------------AATEVEWDPTGRYVV 553 (698)
T ss_pred ----cccccceEEEecchhhhhhccCcccc-----------------------------------ccccceECCCCCEEE
Confidence 567889999996432333221 1122 345689999999999
Q ss_pred EEcCC
Q 011970 462 TGNRH 466 (474)
Q Consensus 462 Sgs~D 466 (474)
|+|.-
T Consensus 554 T~ss~ 558 (698)
T KOG2314|consen 554 TSSSS 558 (698)
T ss_pred Eeeeh
Confidence 99853
No 233
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.30 E-value=2.2e-10 Score=114.06 Aligned_cols=257 Identities=12% Similarity=0.131 Sum_probs=169.8
Q ss_pred ccEEEEeeC----CCeEEe--eeccccceeeEeecCCCceEEEEEEeeCC-----CEEEEEEeecCCCccceeeeEEEEe
Q 011970 98 RDIVFALAH----SGVCAA--FSRETNRRICFLNVSPDEVIRSLFYNKNN-----DSLITVSVYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 98 ~~~las~s~----dgtikl--W~~~tg~~l~~l~g~~~~~i~sv~fspdg-----~~Lis~S~~~s~d~s~Lk~~~~~iw 166 (474)
+..||.||. ...|.| .+-++|+.+..-+.-|.-++..+-|.|+- +.|||.| | ..|||
T Consensus 59 ~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-----D-------~LRlW 126 (364)
T KOG0290|consen 59 KFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-----D-------FLRLW 126 (364)
T ss_pred ceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc-----C-------eEEEE
Confidence 445555543 233333 23466887777777788899999999986 4688743 3 67778
Q ss_pred Eec--cCCCCCccceeee---ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE-----EEEEcCCcEEEEEEcC
Q 011970 167 YIR--RGKPDSGFALFES---ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-----LYSISDKHVQEIKISP 236 (474)
Q Consensus 167 ~i~--~G~~~~~~~lf~~---~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~-----l~tl~~~~V~~vafSp 236 (474)
.+- .++..-...|-.. +......+..+...|=++|.++|-|-|..|||+++|.. ...-|++.|.+|+|+.
T Consensus 127 ri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~ 206 (364)
T KOG0290|consen 127 RIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLK 206 (364)
T ss_pred eccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEecc
Confidence 774 3332100001111 11111223344445567999999999999999999732 2334688999999996
Q ss_pred C--ceEEEEecCCCCccEEEEecCCCeEEEEE-eec--CcceeEEEEEecCCCeEEE-EeCCCcEEEEECCCCc-eEEec
Q 011970 237 G--IMLLIFNRSSSHVPLKILSIEDGTVLKVF-YHL--LHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNAE-LMEVS 309 (474)
Q Consensus 237 g--~~la~~s~~s~D~tIkLWdi~tG~~L~tl-~~h--~~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv~tg~-~~~~l 309 (474)
| +++|+. +.|+.||++|++.-+.-..+ +.. ......++++.++..++++ ......|.|.|++.-. .+..|
T Consensus 207 ~s~~~FASv---gaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L 283 (364)
T KOG0290|consen 207 GSRDVFASV---GADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL 283 (364)
T ss_pred CccceEEEe---cCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence 4 445544 67999999998763322211 111 2345778887777777776 4566889999999854 56779
Q ss_pred cccCCceEEEEEcCCC-cEEEEEc-CCcEEEEeCC--Cc-------EEEEeccCCCCcCCCCeeEEEECC-CCCEEEEEe
Q 011970 310 RTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR--GE-------LVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYC 377 (474)
Q Consensus 310 ~~h~~~v~sv~Fspdg-~llaS~s-D~tIklWd~~--G~-------ll~tl~gH~~~~~~~~v~svafSp-Dg~~LaS~s 377 (474)
++|...|.+++|-|.. ..+.|++ |-.+-|||++ .. +..+. +| .||.|.++| .++.|+.++
T Consensus 284 ~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a-~~-------EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 284 RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTA-GG-------EVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhc-cc-------eeeeeeecccCCCEEEEEe
Confidence 9999999999999865 4566777 8899999984 32 11121 22 279999995 578888764
No 234
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.29 E-value=9.6e-10 Score=110.49 Aligned_cols=228 Identities=13% Similarity=0.171 Sum_probs=152.8
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CC--cEEEEEEcCCceEEEEecCC-C---CccEEEEecCCCe
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DK--HVQEIKISPGIMLLIFNRSS-S---HVPLKILSIEDGT 261 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~--~V~~vafSpg~~la~~s~~s-~---D~tIkLWdi~tG~ 261 (474)
+|+|. .|.--.+.|- |.=+|+++.+..+.-.+-. +. .+-+.-|--+ .||.-+.++ . -..|-|||=....
T Consensus 10 svs~N-QD~ScFava~-~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N-~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 10 SVSFN-QDHSCFAVAT-DTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSN-YLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred EEEEc-cCCceEEEEe-cCceEEEecCchhhhhhhccccCchhhhhHhhhhc-eEEEecCCCCCCCCCceEEEEecccCc
Confidence 58887 5655555554 4459999987644322111 11 1222222212 333332111 0 1358899977788
Q ss_pred EEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECC-CCceEEeccccC--CceEEEEEcCCCcEEEEEc--CCcE
Q 011970 262 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAELMEVSRTEF--MTPSAFIFLYENQLFLTFR--NRTV 336 (474)
Q Consensus 262 ~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~-tg~~~~~l~~h~--~~v~sv~Fspdg~llaS~s--D~tI 336 (474)
|+.+|.- ...|.+|.+. .++|++- -.+.|.+|... +-+.+..+.+.. ...-++.=.-+..+||--+ -|.|
T Consensus 87 ~i~el~f-~~~I~~V~l~---r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 87 CIIELSF-NSEIKAVKLR---RDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred EEEEEEe-ccceeeEEEc---CCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 8888874 3678999976 3555554 56799999987 445554433322 1222232334566666655 7899
Q ss_pred EEEeCCC-cE--EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe-EEEEeCCCCeEEEEecCCCC
Q 011970 337 AVWNFRG-EL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS-INVSSILTGKCLAKINATNC 412 (474)
Q Consensus 337 klWd~~G-~l--l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dgt-IklWdi~tG~cl~tl~gH~~ 412 (474)
+|=|+.- +. -...+.|... +..++++-+|.++||+|. .|| |||||..+|+.++.|+--..
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~-----Iacv~Ln~~Gt~vATaSt-----------kGTLIRIFdt~~g~~l~E~RRG~d 225 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSD-----IACVALNLQGTLVATAST-----------KGTLIRIFDTEDGTLLQELRRGVD 225 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCc-----eeEEEEcCCccEEEEecc-----------CcEEEEEEEcCCCcEeeeeecCCc
Confidence 9999853 32 3678899886 688999999999999986 666 89999999999999865432
Q ss_pred CCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 413 SPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
+ ..|++++||||++.||.+|..||||+..
T Consensus 226 ------------~--------------------A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 226 ------------R--------------------ADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred ------------h--------------------heEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 0 2899999999999999999999999874
No 235
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=5.2e-11 Score=120.38 Aligned_cols=255 Identities=13% Similarity=0.134 Sum_probs=169.6
Q ss_pred ccceeecccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEee-c-CCCceEEEEEEeeCC
Q 011970 64 HLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLN-V-SPDEVIRSLFYNKNN 141 (474)
Q Consensus 64 ~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~-g-~~~~~i~sv~fspdg 141 (474)
++.++|+.|.+-....-|. .-. +...|.+++.||+||+||+.+.+....+. . ++.....+++.|-++
T Consensus 61 ~~l~~fk~~~~~~N~vrf~---~~d--------s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~ 129 (376)
T KOG1188|consen 61 QLLEEFKGPPATTNGVRFI---SCD--------SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKK 129 (376)
T ss_pred hhhheecCCCCcccceEEe---cCC--------CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcC
Confidence 4557777766655432211 000 25789999999999999988766544332 2 233578888998888
Q ss_pred CEEEEEEeecCCCccceeeeEEEEeEeccCCC-CCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe-
Q 011970 142 DSLITVSVYASDNFSSLKCRSTKIEYIRRGKP-DSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT- 219 (474)
Q Consensus 142 ~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~-~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~- 219 (474)
+.++.+..-...+ -.+-|||++.-+. .. .+++. |-.-|..|.|.|.|-.+|+|||.||-|-|+|++.-.
T Consensus 130 ~ii~~GtE~~~s~------A~v~lwDvR~~qq~l~--~~~eS-H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 130 NIIACGTELTRSD------ASVVLWDVRSEQQLLR--QLNES-HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred CeEEeccccccCc------eEEEEEEeccccchhh--hhhhh-ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 8888866544445 6788999977664 22 24443 555667899998888999999999999999987433
Q ss_pred ---EEEEEc-CCcEEEEEEc-CC-ceEEEEecCCCCccEEEEecCCCeEEEEEeecC------cceeEE----EEE-ecC
Q 011970 220 ---MLYSIS-DKHVQEIKIS-PG-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL------HRNKKV----DFI-EQF 282 (474)
Q Consensus 220 ---~l~tl~-~~~V~~vafS-pg-~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~------~~v~~V----~F~-~~~ 282 (474)
++.++. +..|..+.|. |+ .++... +...+.++|+++.|.+...|+-.. -....+ .-. +-+
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~cl---TH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~ 277 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCL---THMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGD 277 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEE---EccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCC
Confidence 455664 4569999999 54 134433 236789999999999876665210 000111 111 222
Q ss_pred CCeEEEEeC-CCcEEEE---ECCCCceE---Eeccc-cCCceEEEEEcCCCcEEEEEc-CCcEEEEeC
Q 011970 283 NEKLLVKQE-NENLQIL---DVRNAELM---EVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 341 (474)
Q Consensus 283 ~~~ll~~~~-D~tIkIW---Dv~tg~~~---~~l~~-h~~~v~sv~Fspdg~llaS~s-D~tIklWd~ 341 (474)
.+.++.++. -++..|. |..++..+ ..+.| |...|+++.|.-.+.++.||+ ||.+++|..
T Consensus 278 ~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 278 KDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 344444432 3333333 44555543 34555 888999999999999999999 999999996
No 236
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.27 E-value=1.5e-08 Score=105.13 Aligned_cols=259 Identities=14% Similarity=0.124 Sum_probs=154.4
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecC----------CCcEEEeecCCCeEEEEEcC----
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ----------DSIYKVFDLKNYTMLYSISD---- 226 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~----------D~tiKlWdl~tg~~l~tl~~---- 226 (474)
.++.+-|..+++.... +..+ ..|..+ +| |||+.|..+.. +..|.|||++|++.+..+.-
T Consensus 27 ~~v~ViD~~~~~v~g~---i~~G--~~P~~~-~s-pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGM---TDGG--FLPNPV-VA-SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCCCEEEEE---EEcc--CCCcee-EC-CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 4566666666665332 2222 234455 87 78887766554 78999999999999988861
Q ss_pred -----CcEEEEEEcCCce-EEEEecCCCCccEEEEecCCCeEEEEEeec-CcceeEEE-----EEecCCCeEEEE-eCCC
Q 011970 227 -----KHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGTVLKVFYHL-LHRNKKVD-----FIEQFNEKLLVK-QENE 293 (474)
Q Consensus 227 -----~~V~~vafSpg~~-la~~s~~s~D~tIkLWdi~tG~~L~tl~~h-~~~v~~V~-----F~~~~~~~ll~~-~~D~ 293 (474)
..-..+++||++. |+++. -+.+..|-+.|+++++.+.+..-- ...+.... ....|+..+-.. ..+|
T Consensus 100 ~~~~~~~~~~~~ls~dgk~l~V~n-~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 100 RFLVGTYPWMTSLTPDNKTLLFYQ-FSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKG 178 (352)
T ss_pred hhhccCccceEEECCCCCEEEEec-CCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCC
Confidence 2345799998665 44443 244788999999999999988721 11111100 001222222222 1222
Q ss_pred cEEEEECCCCceEEeccccC----CceEEEEEcC-CCcEEEEEcCCcEEEEeCCCc------EEEEeccC---CCCcCCC
Q 011970 294 NLQILDVRNAELMEVSRTEF----MTPSAFIFLY-ENQLFLTFRNRTVAVWNFRGE------LVTSFEDH---LLWHPDC 359 (474)
Q Consensus 294 tIkIWDv~tg~~~~~l~~h~----~~v~sv~Fsp-dg~llaS~sD~tIklWd~~G~------ll~tl~gH---~~~~~~~ 359 (474)
+.+. .+- .++.+.. ..+ .|++ ||+++-.+..|+|.+=|+.+. .+.++... ..|.|.-
T Consensus 179 ~~~~---~~~---~vf~~~~~~v~~rP---~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g 249 (352)
T TIGR02658 179 NPKI---KPT---EVFHPEDEYLINHP---AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGG 249 (352)
T ss_pred ceEE---eee---eeecCCccccccCC---ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCc
Confidence 2210 000 1111100 122 3455 777776655699999996432 23333222 2455532
Q ss_pred CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccc
Q 011970 360 NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS 439 (474)
Q Consensus 360 ~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (474)
..-++++|||+.|.-.........- ....+.|-++|..|++.++.+.--.
T Consensus 250 -~q~ia~~~dg~~lyV~~~~~~~~th-k~~~~~V~ViD~~t~kvi~~i~vG~---------------------------- 299 (352)
T TIGR02658 250 -WQQVAYHRARDRIYLLADQRAKWTH-KTASRFLFVVDAKTGKRLRKIELGH---------------------------- 299 (352)
T ss_pred -ceeEEEcCCCCEEEEEecCCccccc-cCCCCEEEEEECCCCeEEEEEeCCC----------------------------
Confidence 2459999999998874310000000 0113689999999999999986422
Q ss_pred cccccccCEEEEEEcCCCC-EEEEEc-CCCcEEEcc
Q 011970 440 TVGEALEDITSLFYDEERN-EIYTGN-RHGLVHVWS 473 (474)
Q Consensus 440 ~~~~~l~~V~slafSpDg~-~LaSgs-~DgtVklWd 473 (474)
.+++|+|||||+ .|+..+ .+++|.+-|
T Consensus 300 -------~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 300 -------EIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred -------ceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 689999999999 999888 578888765
No 237
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.27 E-value=7e-08 Score=99.27 Aligned_cols=241 Identities=16% Similarity=0.266 Sum_probs=154.4
Q ss_pred ccCceEEEEeCCCCeEEEEecC----CCcEEEeecCC--CeE--EEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEE
Q 011970 185 LKWPGFVEFDDVNGKVLTYSAQ----DSIYKVFDLKN--YTM--LYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLK 253 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS~s~----D~tiKlWdl~t--g~~--l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIk 253 (474)
...|.+++++ |++++|-+... ++.|-.|++.. |++ +.+.. +..-..|+++| +..|+++.- .+++|-
T Consensus 36 ~~~Ps~l~~~-~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany--~~g~v~ 112 (345)
T PF10282_consen 36 GENPSWLAVS-PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY--GGGSVS 112 (345)
T ss_dssp SSSECCEEE--TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET--TTTEEE
T ss_pred CCCCceEEEE-eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc--cCCeEE
Confidence 3456679998 68887776655 57888888764 564 33333 45667799997 556666543 367899
Q ss_pred EEecCC-CeEEEE---Eee----------cCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCc--eEE---eccccC
Q 011970 254 ILSIED-GTVLKV---FYH----------LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAE--LME---VSRTEF 313 (474)
Q Consensus 254 LWdi~t-G~~L~t---l~~----------h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~--~~~---~l~~h~ 313 (474)
++++.+ |.+... +.+ ...+.-.+.|. |++..+++.. ....|.++++.... +.. ......
T Consensus 113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~-pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G 191 (345)
T PF10282_consen 113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS-PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG 191 (345)
T ss_dssp EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE--TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred EEEccCCcccceeeeecccCCCCCcccccccccceeEEEC-CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC
Confidence 999986 665443 211 12344678887 6778888864 45689999997755 432 122345
Q ss_pred CceEEEEEcCCCcEEEEEc--CCcEEEEeCC---CcE--EEEeccCC-CCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 011970 314 MTPSAFIFLYENQLFLTFR--NRTVAVWNFR---GEL--VTSFEDHL-LWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 385 (474)
Q Consensus 314 ~~v~sv~Fspdg~llaS~s--D~tIklWd~~---G~l--l~tl~gH~-~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~ 385 (474)
..++-++|+|||+++-... +++|.++++. |++ +++..-.. .+........|++||||++|.....
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr------- 264 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR------- 264 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC-------
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec-------
Confidence 6799999999998876554 9999999984 433 33332110 1111112478999999999987664
Q ss_pred ccCCCCeEEEEeC--CCCeE--EEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEE
Q 011970 386 MEGSAGSINVSSI--LTGKC--LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIY 461 (474)
Q Consensus 386 ~~s~DgtIklWdi--~tG~c--l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~La 461 (474)
..++|-++++ .+|+. +..+.... +.-+.++|+|||++|+
T Consensus 265 ---~~~sI~vf~~d~~~g~l~~~~~~~~~G----------------------------------~~Pr~~~~s~~g~~l~ 307 (345)
T PF10282_consen 265 ---GSNSISVFDLDPATGTLTLVQTVPTGG----------------------------------KFPRHFAFSPDGRYLY 307 (345)
T ss_dssp ---TTTEEEEEEECTTTTTEEEEEEEEESS----------------------------------SSEEEEEE-TTSSEEE
T ss_pred ---cCCEEEEEEEecCCCceEEEEEEeCCC----------------------------------CCccEEEEeCCCCEEE
Confidence 3789999998 34543 22222111 1457899999999999
Q ss_pred EEc-CCCcEEEcc
Q 011970 462 TGN-RHGLVHVWS 473 (474)
Q Consensus 462 Sgs-~DgtVklWd 473 (474)
.++ .+++|.+++
T Consensus 308 Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 308 VANQDSNTVSVFD 320 (345)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEecCCCeEEEEE
Confidence 887 566888875
No 238
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.24 E-value=8.5e-11 Score=124.27 Aligned_cols=126 Identities=13% Similarity=0.186 Sum_probs=96.7
Q ss_pred cceeEEEEEecCCCeEEEEeCCCcEEEEECCCC--------------ceEEe--ccc------------cCCceEEEEEc
Q 011970 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNA--------------ELMEV--SRT------------EFMTPSAFIFL 322 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg--------------~~~~~--l~~------------h~~~v~sv~Fs 322 (474)
.++..+.+.+-++.+++++-.++++.++|...- ....+ ... -...|..++||
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 567888888777788888889999999975421 11111 111 12367889999
Q ss_pred CCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 323 YENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 323 pdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
|||+.||+-| ||.+||.|+. -+++-.++---+- ...|++||||+||++|++ |..|-+|.+..
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG-----LLCvcWSPDGKyIvtGGE-----------DDLVtVwSf~e 363 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG-----LLCVCWSPDGKYIVTGGE-----------DDLVTVWSFEE 363 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHHHHhhccc-----eEEEEEcCCccEEEecCC-----------cceEEEEEecc
Confidence 9999999999 9999999996 5555444321111 468999999999999865 99999999999
Q ss_pred CeEEEEecCCCC
Q 011970 401 GKCLAKINATNC 412 (474)
Q Consensus 401 G~cl~tl~gH~~ 412 (474)
++.++-=+||..
T Consensus 364 rRVVARGqGHkS 375 (636)
T KOG2394|consen 364 RRVVARGQGHKS 375 (636)
T ss_pred ceEEEecccccc
Confidence 999999999986
No 239
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.24 E-value=5.3e-09 Score=105.24 Aligned_cols=174 Identities=10% Similarity=0.188 Sum_probs=132.1
Q ss_pred CcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEecC-CCeEEEEEeecCcceeEEEEEecCCCe
Q 011970 208 SIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEK 285 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~-tG~~L~tl~~h~~~v~~V~F~~~~~~~ 285 (474)
..+-|||=..+.|+.++. ...|.+|.++++...++. .+.|++|... +-+.+..+..-..+.--.+..+-.+..
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl-----~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVL-----ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS 149 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEe-----cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence 468899966778998887 578999999988766655 4689999887 446666665322222122222223344
Q ss_pred EEE-Ee-CCCcEEEEECCCCce--EEeccccCCceEEEEEcCCCcEEEEEc-CC-cEEEEeCC-CcEEEEeccCCCCcCC
Q 011970 286 LLV-KQ-ENENLQILDVRNAEL--MEVSRTEFMTPSAFIFLYENQLFLTFR-NR-TVAVWNFR-GELVTSFEDHLLWHPD 358 (474)
Q Consensus 286 ll~-~~-~D~tIkIWDv~tg~~--~~~l~~h~~~v~sv~Fspdg~llaS~s-D~-tIklWd~~-G~ll~tl~gH~~~~~~ 358 (474)
+|+ -| .=|.|||-|+..-+. ..+...|...+..++.+-+|.++||+| .| -|||||.+ |++++.|.--...
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~--- 226 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR--- 226 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch---
Confidence 555 34 569999999987665 356688999999999999999999999 77 58999995 9999999744433
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
..+..++||||+++||.+|+ .||+.|+.+..
T Consensus 227 A~iy~iaFSp~~s~LavsSd-----------KgTlHiF~l~~ 257 (346)
T KOG2111|consen 227 ADIYCIAFSPNSSWLAVSSD-----------KGTLHIFSLRD 257 (346)
T ss_pred heEEEEEeCCCccEEEEEcC-----------CCeEEEEEeec
Confidence 24899999999999999876 89999998754
No 240
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.23 E-value=2.7e-11 Score=126.26 Aligned_cols=226 Identities=18% Similarity=0.169 Sum_probs=170.9
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEE
Q 011970 132 IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYK 211 (474)
Q Consensus 132 i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiK 211 (474)
=+.+-|+.||..|..++. . ..+-..|..++++...+.+. | -+..|.|- .|.+++|- ++..-+-
T Consensus 132 PY~~~ytrnGrhlllgGr----K------GHlAa~Dw~t~~L~~Ei~v~--E---tv~Dv~~L-Hneq~~AV-AQK~y~y 194 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGR----K------GHLAAFDWVTKKLHFEINVM--E---TVRDVTFL-HNEQFFAV-AQKKYVY 194 (545)
T ss_pred CeeeeecCCccEEEecCC----c------cceeeeecccceeeeeeehh--h---hhhhhhhh-cchHHHHh-hhhceEE
Confidence 377899999998887542 2 34445677888873322222 2 23378886 58888875 5777788
Q ss_pred EeecCCCeEEEEEcC-CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe
Q 011970 212 VFDLKNYTMLYSISD-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ 290 (474)
Q Consensus 212 lWdl~tg~~l~tl~~-~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~ 290 (474)
|+| ..|+.|+-+.. ..|.-+.|-|--.|++++ +.-+-++--|+.+|++...|..-.+++..+.=+ |-|..+=.|.
T Consensus 195 vYD-~~GtElHClk~~~~v~rLeFLPyHfLL~~~--~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN-P~NaVih~Gh 270 (545)
T KOG1272|consen 195 VYD-NNGTELHCLKRHIRVARLEFLPYHFLLVAA--SEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN-PYNAVIHLGH 270 (545)
T ss_pred Eec-CCCcEEeehhhcCchhhhcccchhheeeec--ccCCceEEEeechhhhhHHHHccCCccchhhcC-CccceEEEcC
Confidence 999 78998888874 679999999988887774 456789999999999998887555555555533 5566677788
Q ss_pred CCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECC
Q 011970 291 ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS 368 (474)
Q Consensus 291 ~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSp 368 (474)
.+|||-+|...+.+.+..+-.|...|+++++.++|+++||++ |+.+||||++ -..+.++.- .++ ...++||.
T Consensus 271 snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t---p~~---a~~ls~Sq 344 (545)
T KOG1272|consen 271 SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT---PHP---ASNLSLSQ 344 (545)
T ss_pred CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec---CCC---cccccccc
Confidence 999999999999998877778999999999999999999999 9999999996 333333322 222 46799998
Q ss_pred CCCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 369 DQDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 369 Dg~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
-|-+.++.+ .-|.||-
T Consensus 345 kglLA~~~G-------------~~v~iw~ 360 (545)
T KOG1272|consen 345 KGLLALSYG-------------DHVQIWK 360 (545)
T ss_pred ccceeeecC-------------Ceeeeeh
Confidence 888777653 4688894
No 241
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=1.2e-09 Score=116.35 Aligned_cols=271 Identities=16% Similarity=0.175 Sum_probs=186.2
Q ss_pred CCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeecccc--CceEEEEeCCCCeEEEEec
Q 011970 128 PDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLK--WPGFVEFDDVNGKVLTYSA 205 (474)
Q Consensus 128 ~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~--~~~~V~Fs~~nGk~LaS~s 205 (474)
+.++-..|-.+|||++|..++.|. -.|+++|+..=-+ -|+- |+. -|.+.-.| .|=.-++---
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YK---------P~ikvydlanLSL-----KFER-hlDae~V~feiLs-DD~SK~v~L~ 113 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYK---------PQIKVYDLANLSL-----KFER-HLDAEVVDFEILS-DDYSKSVFLQ 113 (703)
T ss_pred CccccceeEecCCCcEEEEecccC---------CceEEEEccccee-----eeee-cccccceeEEEec-cchhhheEee
Confidence 557788999999999998777665 5677777643221 1321 111 12233333 2322233334
Q ss_pred CCCcEEEeecCCCeEEEEEc-CCcEEEEEEc-CCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCC
Q 011970 206 QDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN 283 (474)
Q Consensus 206 ~D~tiKlWdl~tg~~l~tl~-~~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~ 283 (474)
.|++|-+=. +-|. -|++. ...-.+++.+ |.--|++.+++ ..|.-.|++.|.-|..|+-....++.|..+ +-+
T Consensus 114 ~DR~IefHa-k~G~-hy~~RIP~~GRDm~y~~~scDly~~gsg---~evYRlNLEqGrfL~P~~~~~~~lN~v~in-~~h 187 (703)
T KOG2321|consen 114 NDRTIEFHA-KYGR-HYRTRIPKFGRDMKYHKPSCDLYLVGSG---SEVYRLNLEQGRFLNPFETDSGELNVVSIN-EEH 187 (703)
T ss_pred cCceeeehh-hcCe-eeeeecCcCCccccccCCCccEEEeecC---cceEEEEccccccccccccccccceeeeec-Ccc
Confidence 577774433 2222 22222 1233566666 53223333222 358889999999999999777888999976 456
Q ss_pred CeEEEEeCCCcEEEEECCCCceEEecc------cc-----CCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEec
Q 011970 284 EKLLVKQENENLQILDVRNAELMEVSR------TE-----FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE 350 (474)
Q Consensus 284 ~~ll~~~~D~tIkIWDv~tg~~~~~l~------~h-----~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~ 350 (474)
+.|++|.+|+.|..||.++.....++. .| ...|+++.|+.||-.++.|. +|.|-|+|++ -+.+ -..
T Consensus 188 gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl-~~k 266 (703)
T KOG2321|consen 188 GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL-LVK 266 (703)
T ss_pred ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce-eec
Confidence 777778899999999999877554331 12 23599999999999999998 9999999996 4433 346
Q ss_pred cCCCCcCCCCeeEEEECCC--CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcc
Q 011970 351 DHLLWHPDCNTNNIYITSD--QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKS 428 (474)
Q Consensus 351 gH~~~~~~~~v~svafSpD--g~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~ 428 (474)
+|..-.| +..+.|-+. +..++|.. ...+||||-.||+..+.++.-.
T Consensus 267 dh~~e~p---i~~l~~~~~~~q~~v~S~D------------k~~~kiWd~~~Gk~~asiEpt~----------------- 314 (703)
T KOG2321|consen 267 DHGYELP---IKKLDWQDTDQQNKVVSMD------------KRILKIWDECTGKPMASIEPTS----------------- 314 (703)
T ss_pred ccCCccc---eeeecccccCCCceEEecc------------hHHhhhcccccCCceeeccccC-----------------
Confidence 7877654 788888665 77888864 4789999999999999887655
Q ss_pred ccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEE
Q 011970 429 KKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHV 471 (474)
Q Consensus 429 ~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVkl 471 (474)
.|..+.|=|++-++.+|.++..++-
T Consensus 315 ------------------~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 315 ------------------DLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred ------------------CcCceeeecCCceEEEecCCCccee
Confidence 5677888999999999998887754
No 242
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=3.7e-10 Score=114.54 Aligned_cols=252 Identities=13% Similarity=0.150 Sum_probs=164.1
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecC-CCe----EEEEEc--------------CCcEEEEEEcCCceEEEEecCCC
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYT----MLYSIS--------------DKHVQEIKISPGIMLLIFNRSSS 248 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~-tg~----~l~tl~--------------~~~V~~vafSpg~~la~~s~~s~ 248 (474)
+..|+|+ ..|.+||+|..+|-|-++.-. .++ ...+++ .+.|..|++-+++-++-+--...
T Consensus 28 is~vef~-~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 28 ISAVEFD-HYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred eeeEEee-cccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 4479998 799999999999999998643 222 222221 14578899985322222211255
Q ss_pred CccEEEEecCCCeE-----------------------------------EEEEe-ecCcceeEEEEEecCCCeEEEEeCC
Q 011970 249 HVPLKILSIEDGTV-----------------------------------LKVFY-HLLHRNKKVDFIEQFNEKLLVKQEN 292 (474)
Q Consensus 249 D~tIkLWdi~tG~~-----------------------------------L~tl~-~h~~~v~~V~F~~~~~~~ll~~~~D 292 (474)
|+|||||.+..... .+.+. .|..++.++.+.. |.+. ..+.+|
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et-~lSADd 184 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKET-FLSADD 184 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccce-Eeeccc
Confidence 89999998864321 11222 4778899999873 4444 445589
Q ss_pred CcEEEEECCC-CceEEe--ccccCC-----ceEEEEEcCC-CcEEEEEc-CCcEEEEeCC--CcEE---EEeccCCCCcC
Q 011970 293 ENLQILDVRN-AELMEV--SRTEFM-----TPSAFIFLYE-NQLFLTFR-NRTVAVWNFR--GELV---TSFEDHLLWHP 357 (474)
Q Consensus 293 ~tIkIWDv~t-g~~~~~--l~~h~~-----~v~sv~Fspd-g~llaS~s-D~tIklWd~~--G~ll---~tl~gH~~~~~ 357 (474)
=.|.||+++- .++... .+.|.| -|++.-|+|. -.+|+-++ -|+|+|-|++ .-|. ..|+...++..
T Consensus 185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~ 264 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS 264 (433)
T ss_pred eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc
Confidence 9999999873 333322 334443 4667779875 45666665 9999999996 2232 23443322211
Q ss_pred C-------CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC-CCCeEEEEecCCCCCCCCccccCCCCCCccc
Q 011970 358 D-------CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI-LTGKCLAKINATNCSPKVDDELGSSSTGKSK 429 (474)
Q Consensus 358 ~-------~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi-~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~ 429 (474)
- ..|..|.||++|+||+|-. =-||||||+ ...+.+.+++-|.. ...++| +.
T Consensus 265 rsffseiIsSISDvKFs~sGryilsRD------------yltvk~wD~nme~~pv~t~~vh~~-lr~kLc--------~l 323 (433)
T KOG1354|consen 265 RSFFSEIISSISDVKFSHSGRYILSRD------------YLTVKLWDLNMEAKPVETYPVHEY-LRSKLC--------SL 323 (433)
T ss_pred hhhHHHHhhhhhceEEccCCcEEEEec------------cceeEEEeccccCCcceEEeehHh-HHHHHH--------HH
Confidence 0 1357899999999999853 289999999 77889999999985 111122 11
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 430 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
++++ +.=+=..+.||-++..+.|||..+.+|+.+
T Consensus 324 YEnD----------~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 324 YEND----------AIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred hhcc----------chhheeEEEEcCCcceEecccccceEEEec
Confidence 1111 001345689999999999999999999876
No 243
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.20 E-value=1e-09 Score=117.18 Aligned_cols=174 Identities=12% Similarity=0.122 Sum_probs=139.6
Q ss_pred CCCCeEEEEecCCCcEEEeecCCCeEEEEEc------C---CcEE--EEEEcC--------------C-ceEEEEecCCC
Q 011970 195 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS------D---KHVQ--EIKISP--------------G-IMLLIFNRSSS 248 (474)
Q Consensus 195 ~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~------~---~~V~--~vafSp--------------g-~~la~~s~~s~ 248 (474)
||-+.++|++..||-+|+||..++++...+. + ..+| .+..|| | .+++-+. .
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt---~ 78 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT---P 78 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec---C
Confidence 4678899999999999999999888765543 1 1223 233333 1 2333332 2
Q ss_pred CccEEEEecCCCeEEEEEe--ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCc
Q 011970 249 HVPLKILSIEDGTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQ 326 (474)
Q Consensus 249 D~tIkLWdi~tG~~L~tl~--~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~ 326 (474)
-+.|-+.++..|++-..|. .|-+.|..+... +.-+.|-+++.|..+-.|+...++.++........+.++..+|||.
T Consensus 79 ~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~-~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 79 QGSVLLYSVAGGEITAKLSTDKHYGNVNEILDA-QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred CccEEEEEecCCeEEEEEecCCCCCcceeeecc-cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence 3678999999999999998 566777777754 4457778889999999999999999999999999999999999999
Q ss_pred EEEEEcCCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCC-----CCEEEEEec
Q 011970 327 LFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD-----QDLIISYCK 378 (474)
Q Consensus 327 llaS~sD~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD-----g~~LaS~s~ 378 (474)
.|++++ ++||+||.+ +|.+.+|+||... |+.++|.-+ |+++.|...
T Consensus 158 ~l~~as-~~ik~~~~~~kevv~~ftgh~s~-----v~t~~f~~~~~g~~G~~vLssa~ 209 (541)
T KOG4547|consen 158 ILLTAS-RQIKVLDIETKEVVITFTGHGSP-----VRTLSFTTLIDGIIGKYVLSSAA 209 (541)
T ss_pred EEEecc-ceEEEEEccCceEEEEecCCCcc-----eEEEEEEEeccccccceeeeccc
Confidence 999887 899999995 9999999999987 799999998 888887643
No 244
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.20 E-value=2e-09 Score=107.39 Aligned_cols=160 Identities=12% Similarity=0.160 Sum_probs=119.7
Q ss_pred ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCce--E-EeccccCCceEEEEEcCCC-cEEEEEc-CCcEEEEeCC
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL--M-EVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~--~-~~l~~h~~~v~sv~Fspdg-~llaS~s-D~tIklWd~~ 342 (474)
++.....+.++.+-+...|.++|-|-|.-|||+++|.- + ..|-.|...|..++|+-++ +.|||.+ ||.||+.|++
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 34567788888888888888999999999999999743 3 3478899999999999754 6788888 9999999985
Q ss_pred -CcEEE-EeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEecCCCCCCCCcc
Q 011970 343 -GELVT-SFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDD 418 (474)
Q Consensus 343 -G~ll~-tl~gH~~~~~~~~v~svafSp-Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gH~~~~~~~~ 418 (474)
-+--+ .+|+.+... ...-+++++ |-+++|+--. ....|-|-|+.- +..++.|++|+.
T Consensus 228 ~leHSTIIYE~p~~~~---pLlRLswnkqDpnymATf~~----------dS~~V~iLDiR~P~tpva~L~~H~a------ 288 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSPST---PLLRLSWNKQDPNYMATFAM----------DSNKVVILDIRVPCTPVARLRNHQA------ 288 (364)
T ss_pred ccccceEEecCCCCCC---cceeeccCcCCchHHhhhhc----------CCceEEEEEecCCCcceehhhcCcc------
Confidence 33211 233333111 133455554 3466666433 245688889854 567899999996
Q ss_pred ccCCCCCCccccccccccccccccccccCEEEEEEcCCC-CEEEEEcCCCcEEEccC
Q 011970 419 ELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg-~~LaSgs~DgtVklWd~ 474 (474)
.|.+++|.|.. ..|.|++.|..+-+||.
T Consensus 289 ----------------------------~VNgIaWaPhS~~hictaGDD~qaliWDl 317 (364)
T KOG0290|consen 289 ----------------------------SVNGIAWAPHSSSHICTAGDDCQALIWDL 317 (364)
T ss_pred ----------------------------cccceEecCCCCceeeecCCcceEEEEec
Confidence 89999999976 56999999999999984
No 245
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=2e-09 Score=109.86 Aligned_cols=174 Identities=11% Similarity=0.124 Sum_probs=125.7
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEE---cCCcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCeE--
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI---SDKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTV-- 262 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl---~~~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~~-- 262 (474)
.|++. +.=--+|.+..|-+||++|- ++++--.| .+.+|.++||-| +.-|+++.. .-|-||.... +.
T Consensus 103 ~~aWh-qH~~~fava~nddvVriy~k-sst~pt~Lks~sQrnvtclawRPlsaselavgCr----~gIciW~~s~-tln~ 175 (445)
T KOG2139|consen 103 GVAWH-QHIIAFAVATNDDVVRIYDK-SSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCR----AGICIWSDSR-TLNA 175 (445)
T ss_pred eEeec-hhhhhhhhhccCcEEEEecc-CCCCCceecchhhcceeEEEeccCCcceeeeeec----ceeEEEEcCc-cccc
Confidence 57776 44445778889999999994 44655444 467999999998 667777654 3588997532 22
Q ss_pred -----------EEEEe--ecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEE
Q 011970 263 -----------LKVFY--HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF 328 (474)
Q Consensus 263 -----------L~tl~--~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~ll 328 (474)
++.|+ +| ..|.++++. +|+..|+.++ .|..|.|||+.+|.++....-.-..++-+.|||||..|
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn-~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWN-EDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEc-CCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 22233 33 467888987 5678888877 78999999999999887653344567788999999999
Q ss_pred EEEc-CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 329 LTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 329 aS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
..++ |++.+||+.+ -.+.+-.-+.. . |....+||+|.+|.-.+.
T Consensus 254 faAt~davfrlw~e~q~wt~erw~lgsg-r-----vqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWILGSG-R-----VQTACWSPCGSFLLFACS 300 (445)
T ss_pred EEecccceeeeehhcccceecceeccCC-c-----eeeeeecCCCCEEEEEEc
Confidence 9999 9999999752 33333222222 2 678899999998876663
No 246
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=4.8e-10 Score=118.93 Aligned_cols=205 Identities=14% Similarity=0.256 Sum_probs=145.3
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcC--CceEEEEecCCCCccEEEEecC
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIE 258 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~---~~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~ 258 (474)
|.+-|..++++ .||.+|+|||.|--+.|||.-.+++++.++ ..+|.+++|=| +..++++ +..|.-|||+|+.
T Consensus 49 H~GCVN~LeWn-~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~s--gAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 49 HTGCVNCLEWN-ADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLS--GAGDKLIKLFDLD 125 (758)
T ss_pred ccceecceeec-CCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEe--ccCcceEEEEecc
Confidence 45666788998 799999999999999999999999998886 35899999998 5555555 3569999999997
Q ss_pred C--------C--eEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc-------eEEec-cccC--CceEE
Q 011970 259 D--------G--TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-------LMEVS-RTEF--MTPSA 318 (474)
Q Consensus 259 t--------G--~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~-------~~~~l-~~h~--~~v~s 318 (474)
. | +.+.-+..|..+|+.++-.+.....+.++++||||+-+|++... |...+ .-+. -...+
T Consensus 126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ 205 (758)
T KOG1310|consen 126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKC 205 (758)
T ss_pred cccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeee
Confidence 4 1 22344557899999999653333788999999999999998621 22111 1122 23456
Q ss_pred EEEcCC-CcEEEEEc-CCcEEEEeC---------CCc----------EEEEec-cCC-C-------CcCCCCeeEEEECC
Q 011970 319 FIFLYE-NQLFLTFR-NRTVAVWNF---------RGE----------LVTSFE-DHL-L-------WHPDCNTNNIYITS 368 (474)
Q Consensus 319 v~Fspd-g~llaS~s-D~tIklWd~---------~G~----------ll~tl~-gH~-~-------~~~~~~v~svafSp 368 (474)
+..+|. -.+||.|. |--++|+|. .|. |++-|. +|. . .+. | ..-+.|+|
T Consensus 206 ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~-~-~t~vtfnp 283 (758)
T KOG1310|consen 206 LTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYIT-C-CTYVTFNP 283 (758)
T ss_pred eeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccccee-e-eEEEEECC
Confidence 778874 45666676 999999991 132 454333 343 1 111 1 34689999
Q ss_pred CC-CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 011970 369 DQ-DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 405 (474)
Q Consensus 369 Dg-~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~ 405 (474)
+| .+|+|.+ -.-|.|.|+..++-..
T Consensus 284 NGtElLvs~~------------gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 284 NGTELLVSWG------------GEHVYLFDVNEDKSPT 309 (758)
T ss_pred CCcEEEEeeC------------CeEEEEEeecCCCCce
Confidence 98 5667764 3579999998887654
No 247
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.13 E-value=5.2e-09 Score=111.77 Aligned_cols=181 Identities=10% Similarity=0.140 Sum_probs=138.2
Q ss_pred CceEEEEecCCCCccEEEEecCCCeEEEEEee---cCcce----eE--EEEEec-----------CCCe-EEE-EeCCCc
Q 011970 237 GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH---LLHRN----KK--VDFIEQ-----------FNEK-LLV-KQENEN 294 (474)
Q Consensus 237 g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~---h~~~v----~~--V~F~~~-----------~~~~-ll~-~~~D~t 294 (474)
+.++|.. .+|+-+|+||++++++.+.|.. ..+.. |. +..+|. .+++ +++ |-..|.
T Consensus 5 ~~~~A~~---~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 5 LDYFALS---TGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred hheEeec---CCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 4455543 5589999999999999988862 11211 22 121210 1222 333 558899
Q ss_pred EEEEECCCCceEEecc--ccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCC
Q 011970 295 LQILDVRNAELMEVSR--TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ 370 (474)
Q Consensus 295 IkIWDv~tg~~~~~l~--~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg 370 (474)
|.++++..|++...+. .|...|.++..+.+-..|=|++ |..|-.|++. +.....+.+...- +.+++++|||
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~-----~~sl~is~D~ 156 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL-----VSSLCISPDG 156 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc-----cceEEEcCCC
Confidence 9999999999987764 5999999998888888888988 9999999995 8888888877654 6899999999
Q ss_pred CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEE
Q 011970 371 DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITS 450 (474)
Q Consensus 371 ~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s 450 (474)
+.|+++| ++|++||+.|++.+.++.||.. .|.+
T Consensus 157 ~~l~~as-------------~~ik~~~~~~kevv~~ftgh~s----------------------------------~v~t 189 (541)
T KOG4547|consen 157 KILLTAS-------------RQIKVLDIETKEVVITFTGHGS----------------------------------PVRT 189 (541)
T ss_pred CEEEecc-------------ceEEEEEccCceEEEEecCCCc----------------------------------ceEE
Confidence 9999985 6899999999999999999986 8999
Q ss_pred EEEcCC-----CCEEEEE-cCCCcEEEc
Q 011970 451 LFYDEE-----RNEIYTG-NRHGLVHVW 472 (474)
Q Consensus 451 lafSpD-----g~~LaSg-s~DgtVklW 472 (474)
++|-.+ |.++.|+ ..+.-|-+|
T Consensus 190 ~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 190 LSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred EEEEEeccccccceeeeccccccceeEE
Confidence 999888 6665444 344445555
No 248
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=1.4e-09 Score=114.17 Aligned_cols=243 Identities=17% Similarity=0.202 Sum_probs=173.2
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcC---CceEEEEecCCCCccEEEEec
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKISP---GIMLLIFNRSSSHVPLKILSI 257 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~---~~~V~~vafSp---g~~la~~s~~s~D~tIkLWdi 257 (474)
|.+-+..|.|. ..|..|+|||.|..|-|||-..++....+. .++|.--+|=| +..+++. +.|+.+++=.+
T Consensus 141 H~GcVntV~FN-~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~---s~dgqvr~s~i 216 (559)
T KOG1334|consen 141 HKGCVNTVHFN-QRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTS---SRDGQVRVSEI 216 (559)
T ss_pred CCCccceeeec-ccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceec---cccCceeeeee
Confidence 34556689997 799999999999999999999988776664 45676666665 6677765 55788777543
Q ss_pred -CCCeEEEE--EeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec---cccCC---ceEEEEEcCCCc-E
Q 011970 258 -EDGTVLKV--FYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS---RTEFM---TPSAFIFLYENQ-L 327 (474)
Q Consensus 258 -~tG~~L~t--l~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l---~~h~~---~v~sv~Fspdg~-l 327 (474)
++|.+.++ +.-|.+++..++.-|.....++++++|+.++=.|++++..-..+ ..+.. ..++++..|-+. +
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 46777644 34677899999987666788899999999999999987654332 23333 566788887665 7
Q ss_pred EEEEc-CCcEEEEeCC---Cc----EEEEeccCCC-CcCCCCeeEEEEC-CCCCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 328 FLTFR-NRTVAVWNFR---GE----LVTSFEDHLL-WHPDCNTNNIYIT-SDQDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 328 laS~s-D~tIklWd~~---G~----ll~tl~gH~~-~~~~~~v~svafS-pDg~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
|+++. |.-++++|.+ .+ .+.+|.-|.+ -.....|..++|+ ..+.+||||. |--|.|.+
T Consensus 297 faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn------------De~IYLF~ 364 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN------------DEDIYLFN 364 (559)
T ss_pred cccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec------------ccceEEec
Confidence 88887 9999999962 33 1233333322 1111247889999 5578899886 67788885
Q ss_pred CC--CC----------eEEEE-ecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEc
Q 011970 398 IL--TG----------KCLAK-INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 464 (474)
Q Consensus 398 i~--tG----------~cl~t-l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs 464 (474)
-. .| +.+.. ++||.+ +++.+.| =+|-|..++++|||
T Consensus 365 ~~~~~G~~p~~~s~~~~~~k~vYKGHrN-----------------------------~~TVKgV--NFfGPrsEyVvSGS 413 (559)
T KOG1334|consen 365 KSMGDGSEPDPSSPREQYVKRVYKGHRN-----------------------------SRTVKGV--NFFGPRSEYVVSGS 413 (559)
T ss_pred cccccCCCCCCCcchhhccchhhccccc-----------------------------cccccee--eeccCccceEEecC
Confidence 32 24 34444 788875 1222345 37899999999999
Q ss_pred CCCcEEEcc
Q 011970 465 RHGLVHVWS 473 (474)
Q Consensus 465 ~DgtVklWd 473 (474)
.=|-|-+|+
T Consensus 414 DCGhIFiW~ 422 (559)
T KOG1334|consen 414 DCGHIFIWD 422 (559)
T ss_pred ccceEEEEe
Confidence 999999997
No 249
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.09 E-value=3.8e-09 Score=106.82 Aligned_cols=223 Identities=14% Similarity=0.147 Sum_probs=143.6
Q ss_pred EEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEE-ecCCCcEEEee
Q 011970 136 FYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTY-SAQDSIYKVFD 214 (474)
Q Consensus 136 ~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS-~s~D~tiKlWd 214 (474)
.|||+|++||+++.| .+-|.|..+=|+. .||.. +..+-.+++. .|...+.. ..-|+.|.+|+
T Consensus 15 ~fSp~g~yiAs~~~y-----------rlviRd~~tlq~~---qlf~c--ldki~yieW~-ads~~ilC~~yk~~~vqvws 77 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRY-----------RLVIRDSETLQLH---QLFLC--LDKIVYIEWK-ADSCHILCVAYKDPKVQVWS 77 (447)
T ss_pred eECCCCCeeeeeeee-----------EEEEeccchhhHH---HHHHH--HHHhhheeee-ccceeeeeeeeccceEEEEE
Confidence 589999999998743 2335554444432 24543 2233357776 56655554 45688999999
Q ss_pred cCCCeEEEEEc--CCcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe-
Q 011970 215 LKNYTMLYSIS--DKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ- 290 (474)
Q Consensus 215 l~tg~~l~tl~--~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~- 290 (474)
+...+---.+. ...+.++.+||++ -++..+ ..|-.|.+|++.|.++. -+.+--+.++.++|. |++...+..+
T Consensus 78 l~Qpew~ckIdeg~agls~~~WSPdgrhiL~ts--eF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~-~dg~f~ai~sR 153 (447)
T KOG4497|consen 78 LVQPEWYCKIDEGQAGLSSISWSPDGRHILLTS--EFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFH-PDGQFCAILSR 153 (447)
T ss_pred eecceeEEEeccCCCcceeeeECCCcceEeeee--cceeEEEEEEeccceeE-EecccccCceeEEEC-CCCceeeeeec
Confidence 98766444554 3578999999966 444442 55788999999886553 344444567899997 6777766665
Q ss_pred CC--CcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCCCcE-EEEeccCCCCcCCCCeeEEEEC
Q 011970 291 EN--ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGEL-VTSFEDHLLWHPDCNTNNIYIT 367 (474)
Q Consensus 291 ~D--~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~G~l-l~tl~gH~~~~~~~~v~svafS 367 (474)
.| .-++|.-.+.-++++.+...+.....+-+||||..|| +||---|. +.-.+--. .+..+++|
T Consensus 154 rDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la--------Vwd~~Leykv~aYe~~l------G~k~v~ws 219 (447)
T KOG4497|consen 154 RDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA--------VWDNVLEYKVYAYERGL------GLKFVEWS 219 (447)
T ss_pred ccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE--------Eecchhhheeeeeeecc------ceeEEEec
Confidence 33 2333433333344444444445566788999998774 78852221 11222112 26889999
Q ss_pred CCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 011970 368 SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 404 (474)
Q Consensus 368 pDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl 404 (474)
|-+|+||-|+. |+.+|+-|-.|-+..
T Consensus 220 P~~qflavGsy-----------D~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 220 PCNQFLAVGSY-----------DQMLRVLNHFTWKPF 245 (447)
T ss_pred cccceEEeecc-----------chhhhhhceeeeeeh
Confidence 99999999987 999999776664443
No 250
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=1.2e-08 Score=105.00 Aligned_cols=222 Identities=16% Similarity=0.150 Sum_probs=158.2
Q ss_pred CCCeEEEEecCCCcEEEeecCCCeEEEEE--------cCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCe----EE
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSI--------SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT----VL 263 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~tg~~l~tl--------~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~----~L 263 (474)
++.++|...+.|..+...+.....+...+ ....|-..+-.+| +|+++- +++.+.+|.++.|- .|
T Consensus 67 ~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg-~Litc~---~sG~l~~~~~k~~d~hss~l 142 (412)
T KOG3881|consen 67 GETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG-TLITCV---SSGNLQVRHDKSGDLHSSKL 142 (412)
T ss_pred CceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCC-EEEEEe---cCCcEEEEeccCCccccccc
Confidence 34556777777777777776665554433 1345666666654 444442 25789999998543 33
Q ss_pred EEEeecCcceeEEEEEecCCCeEEEEeCC--CcEEEEECCCCceEEecccc-----------CCceEEEEEcCC--CcEE
Q 011970 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRNAELMEVSRTE-----------FMTPSAFIFLYE--NQLF 328 (474)
Q Consensus 264 ~tl~~h~~~v~~V~F~~~~~~~ll~~~~D--~tIkIWDv~tg~~~~~l~~h-----------~~~v~sv~Fspd--g~ll 328 (474)
..+..+ ..+..|-=.+.....+++|+.. ..++|||+++.+.+ +.+- .-|+.++.|.|. .+.|
T Consensus 143 ~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi--w~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~f 219 (412)
T KOG3881|consen 143 IKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI--WSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKF 219 (412)
T ss_pred eeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceee--eeccCCCCccccceeeeeeccceecCCCCCceE
Confidence 334322 2223333223334555668877 89999999987433 2221 136678999988 9999
Q ss_pred EEEc-CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 011970 329 LTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 405 (474)
Q Consensus 329 aS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~ 405 (474)
|++. -+.+++||.+ -..+.+|.--... +.++...|+|++|..|.. -+.+..+|+.+|+.+.
T Consensus 220 at~T~~hqvR~YDt~~qRRPV~~fd~~E~~-----is~~~l~p~gn~Iy~gn~-----------~g~l~~FD~r~~kl~g 283 (412)
T KOG3881|consen 220 ATITRYHQVRLYDTRHQRRPVAQFDFLENP-----ISSTGLTPSGNFIYTGNT-----------KGQLAKFDLRGGKLLG 283 (412)
T ss_pred EEEecceeEEEecCcccCcceeEeccccCc-----ceeeeecCCCcEEEEecc-----------cchhheecccCceeec
Confidence 9998 9999999994 4567776544433 689999999999999866 7889999999999886
Q ss_pred E-ecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 406 K-INATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 406 t-l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
. ++|-++ .|++|--+|.++.|||++-|.-|||.|.
T Consensus 284 ~~~kg~tG----------------------------------sirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 284 CGLKGITG----------------------------------SIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred cccCCccC----------------------------------CcceEEEcCCCceEEeeccceeEEEeec
Confidence 5 777775 7899999999999999999999999874
No 251
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=2.8e-08 Score=102.22 Aligned_cols=244 Identities=16% Similarity=0.110 Sum_probs=161.1
Q ss_pred ceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCC------ccceeeeccccCceEEEEeCCCCeEEEE
Q 011970 130 EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS------GFALFESESLKWPGFVEFDDVNGKVLTY 203 (474)
Q Consensus 130 ~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~------~~~lf~~~~~~~~~~V~Fs~~nGk~LaS 203 (474)
..|.+++|.-|+++=+-...-+.+ ......+..+.+.. +..++ .+.+...+. .||+ |.+
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~--------~~~~~~~~E~~~~s~~~~~~~~~l~----~~~I~gl~~--~dg~-Lit 120 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADD--------DLPKFVIEEFEISSSLDDAKTVSLG----TKSIKGLKL--ADGT-LIT 120 (412)
T ss_pred hhhhhheeecCCceeEeeccccCc--------ccccccccCCccccccccccccccc----cccccchhh--cCCE-EEE
Confidence 467888888777754333221222 23333333333211 11112 123335565 4785 455
Q ss_pred ecCCCcEEEeecCCCe----EEEEEc-CCcEEEEEEcCCc--eEEEEecCCCC--ccEEEEecCCCeEEEEEee----cC
Q 011970 204 SAQDSIYKVFDLKNYT----MLYSIS-DKHVQEIKISPGI--MLLIFNRSSSH--VPLKILSIEDGTVLKVFYH----LL 270 (474)
Q Consensus 204 ~s~D~tiKlWdl~tg~----~l~tl~-~~~V~~vafSpg~--~la~~s~~s~D--~tIkLWdi~tG~~L~tl~~----h~ 270 (474)
|-.+|.+.+|..+.+. .+..+. +..+..+.-+|+. ..|++ +.. .-++|||+++++.+-+-+. -+
T Consensus 121 c~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~G---Gke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 121 CVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATG---GKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecC---chhcccceeeeecccceeeeeccCCCCccc
Confidence 6779999999998543 223332 3455566666522 23332 323 5799999998744433221 01
Q ss_pred -----cceeEEEEEecC-CCeEEEEeCCCcEEEEECCCCc-eEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC
Q 011970 271 -----HRNKKVDFIEQF-NEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 271 -----~~v~~V~F~~~~-~~~ll~~~~D~tIkIWDv~tg~-~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~ 342 (474)
-+...+.|.+++ +.+++++..=+.+|+||.+.+. .+..+.-....++++...|.|+++.++. -+.+...|.+
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r 277 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLR 277 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheeccc
Confidence 144778898653 4577777889999999999865 3444443455788899999999999998 9999999996
Q ss_pred -CcEEEE-eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe
Q 011970 343 -GELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 407 (474)
Q Consensus 343 -G~ll~t-l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 407 (474)
|.++.. |.|-.+. +.+|--.|.+++|||++- |..+||.|++|-+.+++.
T Consensus 278 ~~kl~g~~~kg~tGs-----irsih~hp~~~~las~GL-----------DRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 278 GGKLLGCGLKGITGS-----IRSIHCHPTHPVLASCGL-----------DRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred CceeeccccCCccCC-----cceEEEcCCCceEEeecc-----------ceeEEEeecccchhhhhh
Confidence 777654 8888876 689999999999999876 999999999998877654
No 252
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.00 E-value=8.3e-09 Score=104.38 Aligned_cols=301 Identities=13% Similarity=0.105 Sum_probs=185.5
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~ 177 (474)
|.+||++++-+ +-+-|.+|=|.++-+.- -+.|.-+-+..|...++.+- |. | ..+.+|++.+.+...
T Consensus 20 g~yiAs~~~yr-lviRd~~tlq~~qlf~c--ldki~yieW~ads~~ilC~~-yk--~------~~vqvwsl~Qpew~c-- 85 (447)
T KOG4497|consen 20 GNYIASLSRYR-LVIRDSETLQLHQLFLC--LDKIVYIEWKADSCHILCVA-YK--D------PKVQVWSLVQPEWYC-- 85 (447)
T ss_pred CCeeeeeeeeE-EEEeccchhhHHHHHHH--HHHhhheeeeccceeeeeee-ec--c------ceEEEEEeecceeEE--
Confidence 99999999884 44666654443221110 13366677778887776643 32 2 378889987766421
Q ss_pred ceeeeccccCceEEEEeCCCC-eEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCc--cEE
Q 011970 178 ALFESESLKWPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHV--PLK 253 (474)
Q Consensus 178 ~lf~~~~~~~~~~V~Fs~~nG-k~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~--tIk 253 (474)
++-+ + ..-.-+..+| ||| .+|.++..|--|.||.|.|-++.+.-+ ...+..++|+|++++++..+ ..|. -+.
T Consensus 86 kIde-g-~agls~~~WS-PdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~s-RrDCkdyv~ 161 (447)
T KOG4497|consen 86 KIDE-G-QAGLSSISWS-PDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILS-RRDCKDYVQ 161 (447)
T ss_pred Eecc-C-CCcceeeeEC-CCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeee-cccHHHHHH
Confidence 1111 1 1223368898 799 678889999999999999877765444 46789999998655544422 2232 244
Q ss_pred EEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccC-CceEEEEEcCCCcEEEEEc
Q 011970 254 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFIFLYENQLFLTFR 332 (474)
Q Consensus 254 LWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~-~~v~sv~Fspdg~llaS~s 332 (474)
|..-+.-++++.|.-.+--...+.++| ++.-+-+||-- .--+++.-|- -.+..++++|-+|+|+.|+
T Consensus 162 i~~c~~W~ll~~f~~dT~DltgieWsP----------dg~~laVwd~~--Leykv~aYe~~lG~k~v~wsP~~qflavGs 229 (447)
T KOG4497|consen 162 ISSCKAWILLKEFKLDTIDLTGIEWSP----------DGNWLAVWDNV--LEYKVYAYERGLGLKFVEWSPCNQFLAVGS 229 (447)
T ss_pred HHhhHHHHHHHhcCCCcccccCceECC----------CCcEEEEecch--hhheeeeeeeccceeEEEeccccceEEeec
Confidence 444444455666664333345667764 34556677621 0011222222 3567889999999999999
Q ss_pred -CCcEEEEeC-C----CcEE--------------------------------------------------------EEec
Q 011970 333 -NRTVAVWNF-R----GELV--------------------------------------------------------TSFE 350 (474)
Q Consensus 333 -D~tIklWd~-~----G~ll--------------------------------------------------------~tl~ 350 (474)
|+.+||-|- + ||.+ ++++
T Consensus 230 yD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lk 309 (447)
T KOG4497|consen 230 YDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLK 309 (447)
T ss_pred cchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeeccc
Confidence 999998661 1 2211 1111
Q ss_pred cCCC-CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccc
Q 011970 351 DHLL-WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 429 (474)
Q Consensus 351 gH~~-~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~ 429 (474)
--++ .-|-|.+--++||+|.+++|+-..+ --+.+-|||++.-+.-+.|..-.
T Consensus 310 p~tD~pnPk~g~g~lafs~Ds~y~aTrnd~---------~PnalW~Wdlq~l~l~avLiQk~------------------ 362 (447)
T KOG4497|consen 310 PPTDFPNPKCGAGKLAFSCDSTYAATRNDK---------YPNALWLWDLQNLKLHAVLIQKH------------------ 362 (447)
T ss_pred CCCCCCCcccccceeeecCCceEEeeecCC---------CCceEEEEechhhhhhhhhhhcc------------------
Confidence 0000 2234566789999999999986431 24678999997655544443222
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEc
Q 011970 430 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 472 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklW 472 (474)
.|.+..++|....|+-.-...-+.+|
T Consensus 363 -----------------piraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 363 -----------------PIRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred -----------------ceeEEEeCCCCceEEEEcCCceEEEE
Confidence 78899999999888755444446666
No 253
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=7.3e-09 Score=110.10 Aligned_cols=161 Identities=10% Similarity=0.032 Sum_probs=119.1
Q ss_pred cCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEe-ecCcceeEEEEEecCCCeEEE-EeCCCcEEEEECCC
Q 011970 225 SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRN 302 (474)
Q Consensus 225 ~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~-~h~~~v~~V~F~~~~~~~ll~-~~~D~tIkIWDv~t 302 (474)
|.+-|.+++++.+|.|+++ +|+|.-+-|||.-.-+++..+. ||...|++|.|.|..+..+++ +..|.-|+|+|+..
T Consensus 49 H~GCVN~LeWn~dG~lL~S--GSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLAS--GSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred ccceecceeecCCCCEEee--cCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 4457999999965555555 3668889999999889998886 899999999999877766666 56999999999985
Q ss_pred C----------ceEEeccccCCceEEEEEcCCC-cEEEEEc-CCcEEEEeCC--CcEEEEeccCCCCcC----CCCeeEE
Q 011970 303 A----------ELMEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHP----DCNTNNI 364 (474)
Q Consensus 303 g----------~~~~~l~~h~~~v~sv~Fspdg-~llaS~s-D~tIklWd~~--G~ll~tl~gH~~~~~----~~~v~sv 364 (474)
. +.+....-|+..|..++--|++ ..|-+++ ||||+-+|++ -.|-.....|..-+. ......+
T Consensus 127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~l 206 (758)
T KOG1310|consen 127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCL 206 (758)
T ss_pred ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeee
Confidence 2 2233456699999999999999 8999999 9999999984 234332222211000 0124678
Q ss_pred EECCCC-CEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 365 YITSDQ-DLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 365 afSpDg-~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
.+||.. .+||-|. +|--.+|+|+
T Consensus 207 tisp~rp~~laVGg-----------sdpfarLYD~ 230 (758)
T KOG1310|consen 207 TISPSRPYYLAVGG-----------SDPFARLYDR 230 (758)
T ss_pred eecCCCCceEEecC-----------CCchhhhhhh
Confidence 899954 6666654 3888899984
No 254
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.99 E-value=1.4e-08 Score=103.26 Aligned_cols=224 Identities=12% Similarity=0.187 Sum_probs=148.6
Q ss_pred ccccceeecccCCCCCcccccccccccccEEEEEee----ccEEEEeeCCCeEEeeeccc-cce----------------
Q 011970 62 NMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA----RDIVFALAHSGVCAAFSRET-NRR---------------- 120 (474)
Q Consensus 62 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s----~~~las~s~dgtiklW~~~t-g~~---------------- 120 (474)
....+.+|.-|+|.--+ ++-|--..+|..|..- ...+.-...|.|+|+|.+.. +..
T Consensus 61 ey~~~t~fqshepEFDY---LkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~ 137 (433)
T KOG1354|consen 61 EYNFQTEFQSHEPEFDY---LKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTIT 137 (433)
T ss_pred ceeeeeeeeccCcccch---hhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccc
Confidence 45567888889887655 4444556777777766 44455556899999998652 111
Q ss_pred ------------------eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceee-
Q 011970 121 ------------------ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFE- 181 (474)
Q Consensus 121 ------------------l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~- 181 (474)
-+..-..|.--|.|+.+|.|+++++|+ || -.|.||.+.-- ++.|.+-.
T Consensus 138 ~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-----Dd------LRINLWnlei~--d~sFnIVDI 204 (433)
T KOG1354|consen 138 SLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-----DD------LRINLWNLEII--DQSFNIVDI 204 (433)
T ss_pred eeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-----cc------eeeeecccccc--CCceeEEEc
Confidence 112222366679999999999999983 67 56777876311 11111111
Q ss_pred --e--ccc-cCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe-EE-----EEEc-C-----------CcEEEEEEcCC-
Q 011970 182 --S--ESL-KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-ML-----YSIS-D-----------KHVQEIKISPG- 237 (474)
Q Consensus 182 --~--~~~-~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~-~l-----~tl~-~-----------~~V~~vafSpg- 237 (474)
+ +.+ --+.+.+|+|..-.+++++|.-|+|||-|+.... |. ...+ + ..|.+|+||+.
T Consensus 205 KP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG 284 (433)
T KOG1354|consen 205 KPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG 284 (433)
T ss_pred cccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC
Confidence 0 111 1234679998788899999999999999997543 32 2111 0 35889999974
Q ss_pred ceEEEEecCCCCccEEEEec-CCCeEEEEEeecC------------cce---eEEEEEecCCCeEEEEeCCCcEEEEECC
Q 011970 238 IMLLIFNRSSSHVPLKILSI-EDGTVLKVFYHLL------------HRN---KKVDFIEQFNEKLLVKQENENLQILDVR 301 (474)
Q Consensus 238 ~~la~~s~~s~D~tIkLWdi-~tG~~L~tl~~h~------------~~v---~~V~F~~~~~~~ll~~~~D~tIkIWDv~ 301 (474)
..+++ .+-.||||||+ ...+.+.+++-|. ..+ +.+.|+ -++..+++|+.....+++++.
T Consensus 285 ryils----RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s-g~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 285 RYILS----RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS-GNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred cEEEE----eccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc-CCcceEecccccceEEEecCC
Confidence 55543 23479999999 5677888877542 122 677776 345688889999999999987
Q ss_pred CCceE
Q 011970 302 NAELM 306 (474)
Q Consensus 302 tg~~~ 306 (474)
.|...
T Consensus 360 ~gsk~ 364 (433)
T KOG1354|consen 360 RGSKE 364 (433)
T ss_pred CCcce
Confidence 76543
No 255
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=3.1e-07 Score=97.51 Aligned_cols=167 Identities=11% Similarity=0.086 Sum_probs=100.8
Q ss_pred CcEEEEEEcCCce-EEEE-ecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEE-e--CCCcEEEEECC
Q 011970 227 KHVQEIKISPGIM-LLIF-NRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-Q--ENENLQILDVR 301 (474)
Q Consensus 227 ~~V~~vafSpg~~-la~~-s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~-~--~D~tIkIWDv~ 301 (474)
..+..-+|||++. ++.+ +..+....|.++|+.+|+...-.. ..+.+...+|+ |++.+|+.. + .+..|-++|+.
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVS-KDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEEC-CCCCEEEEEEccCCCcEEEEEECC
Confidence 4677899998553 3443 332234569999999997654333 22445567786 678888775 3 34567777999
Q ss_pred CCceEEeccccCCceEEEEEcCCCcEEEEEcC--C--cEEEEeCC-CcEEE-EeccCCCCcCCCCeeEEEECCCCCEEEE
Q 011970 302 NAELMEVSRTEFMTPSAFIFLYENQLFLTFRN--R--TVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIIS 375 (474)
Q Consensus 302 tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD--~--tIklWd~~-G~ll~-tl~gH~~~~~~~~v~svafSpDg~~LaS 375 (474)
+++..+...+. .....-.|+|||+.|+=.+| + .|-+.|+. |+..+ ++.+. + ...|||||++||-
T Consensus 266 ~g~~~~LT~~~-~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~-------~~~~SPDG~~Ia~ 335 (419)
T PRK04043 266 TKTLTQITNYP-GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N-------NSSVSTYKNYIVY 335 (419)
T ss_pred CCcEEEcccCC-CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--c-------CceECCCCCEEEE
Confidence 99876653332 22234469999987765553 3 56677776 55533 22222 1 2479999999987
Q ss_pred EecCCCccccccC-CCCeEEEEeCCCCeEEEEecC
Q 011970 376 YCKAEPEDQWMEG-SAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 376 ~s~~~~~~~~~~s-~DgtIklWdi~tG~cl~tl~g 409 (474)
.+.....+ .+ ....|.+-|+.+|+. +.|..
T Consensus 336 ~~~~~~~~---~~~~~~~I~v~d~~~g~~-~~LT~ 366 (419)
T PRK04043 336 SSRETNNE---FGKNTFNLYLISTNSDYI-RRLTA 366 (419)
T ss_pred EEcCCCcc---cCCCCcEEEEEECCCCCe-EECCC
Confidence 65411000 00 113677778877753 44543
No 256
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.98 E-value=6.7e-06 Score=79.95 Aligned_cols=217 Identities=15% Similarity=0.156 Sum_probs=147.4
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEc-CCceEEEEecCCCCccEEEEecCCCeEEEEE
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl 266 (474)
+..+.|++.+|.++.+.-..+.|..||.++++... +.......+++. +++.|+++.. ..+.+.|+++|+....+
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~~~G~~~~~~~g~l~v~~~----~~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPGPNGMAFDRPDGRLYVADS----GGIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSSEEEEEEECTTSEEEEEET----TCEEEEETTTTEEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCCCceEEEEccCCEEEEEEc----CceEEEecCCCcEEEEe
Confidence 45688984489999998899999999998887543 222227888998 7888877753 34677799999765444
Q ss_pred ee-----cCcceeEEEEEecCCCeEEEE-eCC--------CcEEEEECCCCceEEeccccCCceEEEEEcCCCcEE-EEE
Q 011970 267 YH-----LLHRNKKVDFIEQFNEKLLVK-QEN--------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF-LTF 331 (474)
Q Consensus 267 ~~-----h~~~v~~V~F~~~~~~~ll~~-~~D--------~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~ll-aS~ 331 (474)
.. .......+++. ++|. +.++ ... +.|-.++.. ++.... ......+..++|+||++.| ++-
T Consensus 77 ~~~~~~~~~~~~ND~~vd-~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~-~~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVD-PDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV-ADGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp EEETTCSCTEEEEEEEE--TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE-EEEESSEEEEEEETTSSEEEEEE
T ss_pred eccCCCcccCCCceEEEc-CCCC-EEEEecCCCccccccccceEEECCC-CeEEEE-ecCcccccceEECCcchheeecc
Confidence 42 34556788886 4454 5554 321 446667766 565444 3346678999999999865 455
Q ss_pred c-CCcEEEEeCC--Cc-E-----EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 011970 332 R-NRTVAVWNFR--GE-L-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 402 (474)
Q Consensus 332 s-D~tIklWd~~--G~-l-----l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~ 402 (474)
+ .+.|..++++ +. + +..+.+-... .-.+++.++|++.++... .+.|.+.|. +|+
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~-----pDG~~vD~~G~l~va~~~-----------~~~I~~~~p-~G~ 215 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGY-----PDGLAVDSDGNLWVADWG-----------GGRIVVFDP-DGK 215 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCE-----EEEEEEBTTS-EEEEEET-----------TTEEEEEET-TSC
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCCcC-----CCcceEcCCCCEEEEEcC-----------CCEEEEECC-Ccc
Confidence 6 8888888883 43 2 2222222211 358999999999887554 789999996 599
Q ss_pred EEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEE-cCCCCEEEEEc
Q 011970 403 CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY-DEERNEIYTGN 464 (474)
Q Consensus 403 cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slaf-SpDg~~LaSgs 464 (474)
.+..+.--.. .+++++| -||+++|+-.+
T Consensus 216 ~~~~i~~p~~----------------------------------~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 216 LLREIELPVP----------------------------------RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEE-SSS----------------------------------SEEEEEEESTTSSEEEEEE
T ss_pred EEEEEcCCCC----------------------------------CEEEEEEECCCCCEEEEEe
Confidence 9998865432 7899999 58888877443
No 257
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=3.9e-08 Score=105.12 Aligned_cols=279 Identities=10% Similarity=0.145 Sum_probs=184.8
Q ss_pred hhhhcccccceeecccCCCCCcccccccccccccEEEEEeeccE-EEEeeCCCeEEeeeccccceeeEeecCCCceEEEE
Q 011970 57 QERFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDI-VFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSL 135 (474)
Q Consensus 57 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~-las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv 135 (474)
...++.|.|-+.|++-.......+ .|+ |++ +|+|-+--.||+||+. +--|++=..-..++|.=.
T Consensus 36 ~~~~~rieLiQdfe~p~ast~ik~-s~D-------------GqY~lAtG~YKP~ikvydla-nLSLKFERhlDae~V~fe 100 (703)
T KOG2321|consen 36 VDYRQRIELIQDFEMPTASTRIKV-SPD-------------GQYLLATGTYKPQIKVYDLA-NLSLKFERHLDAEVVDFE 100 (703)
T ss_pred hHHHHHHHHHHhcCCccccceeEe-cCC-------------CcEEEEecccCCceEEEEcc-cceeeeeecccccceeEE
Confidence 455667777777776554333333 455 665 6788899999999976 666666554344555443
Q ss_pred EEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeec
Q 011970 136 FYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL 215 (474)
Q Consensus 136 ~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl 215 (474)
-++-|-..++. =-.| |+|.+-. .-|.- +...--..=..+.++.|+-.++.-|+....| =.+|
T Consensus 101 iLsDD~SK~v~----L~~D------R~IefHa-k~G~h------y~~RIP~~GRDm~y~~~scDly~~gsg~evY-RlNL 162 (703)
T KOG2321|consen 101 ILSDDYSKSVF----LQND------RTIEFHA-KYGRH------YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVY-RLNL 162 (703)
T ss_pred EeccchhhheE----eecC------ceeeehh-hcCee------eeeecCcCCccccccCCCccEEEeecCcceE-EEEc
Confidence 33333221111 1122 3333221 22221 1110000001356666777777666666555 4599
Q ss_pred CCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeec------C-----cceeEEEEEec
Q 011970 216 KNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL------L-----HRNKKVDFIEQ 281 (474)
Q Consensus 216 ~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h------~-----~~v~~V~F~~~ 281 (474)
+.|..|..+. ...++.|.++| .+.|+++ ..++.|..||..+-....++... . ..|.++.|. .
T Consensus 163 EqGrfL~P~~~~~~~lN~v~in~~hgLla~G---t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~-d 238 (703)
T KOG2321|consen 163 EQGRFLNPFETDSGELNVVSINEEHGLLACG---TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFR-D 238 (703)
T ss_pred cccccccccccccccceeeeecCccceEEec---ccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEec-C
Confidence 9999998886 36899999998 6666654 45789999999998877777632 1 237889996 3
Q ss_pred CCCeEEEEeCCCcEEEEECCCCceEEec-cccCCceEEEEEcCC--CcEEEEEcCCcEEEEeC-CCcEEEEeccCCCCcC
Q 011970 282 FNEKLLVKQENENLQILDVRNAELMEVS-RTEFMTPSAFIFLYE--NQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHP 357 (474)
Q Consensus 282 ~~~~ll~~~~D~tIkIWDv~tg~~~~~l-~~h~~~v~sv~Fspd--g~llaS~sD~tIklWd~-~G~ll~tl~gH~~~~~ 357 (474)
+|=.+++|..+|.+-|+|+++.+.+-+- .+....+..+.|.+. +..++|....++||||- +|+....++.-..
T Consensus 239 ~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~--- 315 (703)
T KOG2321|consen 239 DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSD--- 315 (703)
T ss_pred CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccCC---
Confidence 4567777889999999999999877652 334467888889754 55677666789999998 5999988886543
Q ss_pred CCCeeEEEECCCCCEEEEEec
Q 011970 358 DCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 358 ~~~v~svafSpDg~~LaS~s~ 378 (474)
+|.+++-|++-++..+-.
T Consensus 316 ---lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 316 ---LNDFCFVPGSGMFFTANE 333 (703)
T ss_pred ---cCceeeecCCceEEEecC
Confidence 689999999999998753
No 258
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.95 E-value=2.8e-09 Score=105.14 Aligned_cols=135 Identities=11% Similarity=0.153 Sum_probs=105.0
Q ss_pred CCCccEEEEecCCCeEEEEE----------eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC--CceE--Eecccc
Q 011970 247 SSHVPLKILSIEDGTVLKVF----------YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--AELM--EVSRTE 312 (474)
Q Consensus 247 s~D~tIkLWdi~tG~~L~tl----------~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t--g~~~--~~l~~h 312 (474)
-+++.+-+||+.+|..+-.| ..|..+|.+|+|-+.. ..=++++.+..+-.|.+.. |.|. ....-.
T Consensus 172 yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~-~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk 250 (323)
T KOG0322|consen 172 YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC-DRGISGGADDKLVMYSLNHSTGSLQIRKEITLK 250 (323)
T ss_pred ccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-cCCcCCCccccceeeeeccccCcccccceEEec
Confidence 34678999999998544333 3577899999996433 3345566777778887764 4432 112223
Q ss_pred CCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC
Q 011970 313 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 390 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~D 390 (474)
.-.|..+..-||++.|||++ |+.|||++-+ ++.+..|+-|... |+++|||||-.++|++|+ |
T Consensus 251 npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsag-----vn~vAfspd~~lmAaask-----------D 314 (323)
T KOG0322|consen 251 NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAG-----VNAVAFSPDCELMAAASK-----------D 314 (323)
T ss_pred CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcc-----eeEEEeCCCCchhhhccC-----------C
Confidence 34677788999999999999 9999999995 9999999999976 799999999999999987 9
Q ss_pred CeEEEEeC
Q 011970 391 GSINVSSI 398 (474)
Q Consensus 391 gtIklWdi 398 (474)
++|-||++
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 99999985
No 259
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.94 E-value=8.3e-07 Score=91.55 Aligned_cols=230 Identities=13% Similarity=0.102 Sum_probs=141.9
Q ss_pred EEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCC
Q 011970 94 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 173 (474)
Q Consensus 94 i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~ 173 (474)
++..++.++.++.+|.+..+|.+||+.+-.... ..+ +.+.-.-- ++.++.++ .+ ..+..+|..+|+.
T Consensus 101 p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-~~~-~~~~p~v~-~~~v~v~~----~~------g~l~a~d~~tG~~ 167 (377)
T TIGR03300 101 VGADGGLVFVGTEKGEVIALDAEDGKELWRAKL-SSE-VLSPPLVA-NGLVVVRT----ND------GRLTALDAATGER 167 (377)
T ss_pred eEEcCCEEEEEcCCCEEEEEECCCCcEeeeecc-Cce-eecCCEEE-CCEEEEEC----CC------CeEEEEEcCCCce
Confidence 344588899999999999999999998866553 222 22211112 34454432 23 4677788888886
Q ss_pred CCccceeeeccccC------ceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC------C---cEEEEEEcC--
Q 011970 174 DSGFALFESESLKW------PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------K---HVQEIKISP-- 236 (474)
Q Consensus 174 ~~~~~lf~~~~~~~------~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~------~---~V~~vafSp-- 236 (474)
+|+...... .....+. +| .+..+..++.+..+|+++|+.+.+... . .+..+.-+|
T Consensus 168 -----~W~~~~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~ 239 (377)
T TIGR03300 168 -----LWTYSRVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV 239 (377)
T ss_pred -----eeEEccCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE
Confidence 343311000 0112232 45 456677789999999999998765421 0 011111112
Q ss_pred -CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccc-cCC
Q 011970 237 -GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-EFM 314 (474)
Q Consensus 237 -g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~-h~~ 314 (474)
++.+.+.+ .++.+..+|.++|+.+...+.. ....+. ..++++.+++.|+.|..+|..+|+.+-.... ...
T Consensus 240 ~~~~vy~~~---~~g~l~a~d~~tG~~~W~~~~~--~~~~p~---~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~ 311 (377)
T TIGR03300 240 DGGQVYAVS---YQGRVAALDLRSGRVLWKRDAS--SYQGPA---VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYR 311 (377)
T ss_pred ECCEEEEEE---cCCEEEEEECCCCcEEEeeccC--CccCce---EeCCEEEEECCCCeEEEEECCCCcEEEccccccCC
Confidence 45555543 3678999999999998777621 112222 2368888889999999999999987743311 111
Q ss_pred ceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCC
Q 011970 315 TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLL 354 (474)
Q Consensus 315 ~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~ 354 (474)
...+.+. .+..+..++ |+.|.++|.+ |+++.+++-+..
T Consensus 312 ~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~ 351 (377)
T TIGR03300 312 QLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS 351 (377)
T ss_pred ccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence 1111111 344555666 9999999995 999998886553
No 260
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.93 E-value=3.3e-08 Score=99.72 Aligned_cols=212 Identities=9% Similarity=0.026 Sum_probs=144.5
Q ss_pred CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCC---eEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEEC-
Q 011970 226 DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG---TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV- 300 (474)
Q Consensus 226 ~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG---~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv- 300 (474)
-+.|.+-||++ ..++|++ +.+ +.|.|...... +..++|+.|...+..|++. |...+|++++.|.+-.+|..
T Consensus 10 ~~pitchAwn~drt~iAv~-~~~--~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWa-p~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVS-PNN--HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWA-PKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred cCceeeeeecCCCceEEec-cCC--ceEEEEEecCCCCceeceehhhhCcceeEEeec-CCCCceeEccCCCCccccccC
Confidence 46788999996 5555554 333 45666655443 5788999999999999998 45678999999999999998
Q ss_pred CCCceEE--eccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 011970 301 RNAELME--VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 377 (474)
Q Consensus 301 ~tg~~~~--~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s 377 (474)
..++-.. ++.-++.....|-++|..+.||.+| -+.|.||-+++|---=...|...-....|.++.+.|++-+||.||
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 4454332 3445777889999999999999999 999999998765211011122110112378999999999999988
Q ss_pred cCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccc---cccccccccccccCEEEEEEc
Q 011970 378 KAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNK---SSYIRSTVGEALEDITSLFYD 454 (474)
Q Consensus 378 ~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~V~slafS 454 (474)
. |+..|++.. .++-+..-.. .++-++. .-. |....+.- .+|..|.||
T Consensus 166 ~-----------D~k~rVfSa----yIK~Vdekpa------p~pWgsk-----~PFG~lm~E~~~~g----gwvh~v~fs 215 (361)
T KOG1523|consen 166 T-----------DGKCRVFSA----YIKGVDEKPA------PTPWGSK-----MPFGQLMSEASSSG----GWVHGVLFS 215 (361)
T ss_pred c-----------CcceeEEEE----eeeccccCCC------CCCCccC-----CcHHHHHHhhccCC----CceeeeEeC
Confidence 7 999999874 2222221111 0000000 000 11111111 299999999
Q ss_pred CCCCEEEEEcCCCcEEE
Q 011970 455 EERNEIYTGNRHGLVHV 471 (474)
Q Consensus 455 pDg~~LaSgs~DgtVkl 471 (474)
|+|..|+=.+.|++|-+
T Consensus 216 ~sG~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 216 PSGNRLAWVGHDSTVSF 232 (361)
T ss_pred CCCCEeeEecCCCceEE
Confidence 99999999999999865
No 261
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.91 E-value=7.2e-07 Score=84.95 Aligned_cols=209 Identities=16% Similarity=0.131 Sum_probs=130.6
Q ss_pred EEEEeEeccCCCCCccceeeecc---ccCceEE--EEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC-CcEEE-EEE
Q 011970 162 STKIEYIRRGKPDSGFALFESES---LKWPGFV--EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KHVQE-IKI 234 (474)
Q Consensus 162 ~~~iw~i~~G~~~~~~~lf~~~~---~~~~~~V--~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~-~~V~~-vaf 234 (474)
++..+|.++|+. +|+... ... .+ .+. .+| .|..++.++.+..||.++|+.+.+... ..+.. ...
T Consensus 4 ~l~~~d~~tG~~-----~W~~~~~~~~~~--~~~~~~~-~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 74 (238)
T PF13360_consen 4 TLSALDPRTGKE-----LWSYDLGPGIGG--PVATAVP-DGG-RVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV 74 (238)
T ss_dssp EEEEEETTTTEE-----EEEEECSSSCSS--EEETEEE-ETT-EEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE
T ss_pred EEEEEECCCCCE-----EEEEECCCCCCC--ccceEEE-eCC-EEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee
Confidence 455566667775 444321 222 23 342 245 455557899999999999998877652 22111 223
Q ss_pred cCCceEEEEecCCCCccEEEEecCCCeEEEEE-eecC-----cceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe
Q 011970 235 SPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF-YHLL-----HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV 308 (474)
Q Consensus 235 Spg~~la~~s~~s~D~tIkLWdi~tG~~L~tl-~~h~-----~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~ 308 (474)
. ++.+.+.. .++.|..+|++||+.+.++ .... .....+++ .++.++++..++.|..+|+++|+.+-.
T Consensus 75 ~-~~~v~v~~---~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 75 D-GGRVYVGT---SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV---DGDRLYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp E-TTEEEEEE---TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE---ETTEEEEEETCSEEEEEETTTTEEEEE
T ss_pred c-cccccccc---ceeeeEecccCCcceeeeeccccccccccccccCceE---ecCEEEEEeccCcEEEEecCCCcEEEE
Confidence 3 44444443 2568999999999999885 3221 11222332 278888888899999999999998755
Q ss_pred ccccCCc----------eEEEEEcCCCcEEEEEcCC-cEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 011970 309 SRTEFMT----------PSAFIFLYENQLFLTFRNR-TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 376 (474)
Q Consensus 309 l~~h~~~----------v~sv~Fspdg~llaS~sD~-tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~ 376 (474)
...+... +.+-....++.++++..++ .+.+ |+. |+.+-+..-+. +.. ...+++..|+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~~~~-------~~~-~~~~~~~~l~~~ 218 (238)
T PF13360_consen 148 YPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKPISG-------IYS-LPSVDGGTLYVT 218 (238)
T ss_dssp EESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEECSS--------ECE-CEECCCTEEEEE
T ss_pred eecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEecCCC-------ccC-CceeeCCEEEEE
Confidence 4332211 1222234466777766666 5777 995 88664333111 122 145788888887
Q ss_pred ecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 377 CKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 377 s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
+. |+.|..||+.||+.+.+
T Consensus 219 ~~-----------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 219 SS-----------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ET-----------TTEEEEEETTTTEEEEE
T ss_pred eC-----------CCEEEEEECCCCCEEeE
Confidence 65 89999999999998754
No 262
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=8.2e-07 Score=94.32 Aligned_cols=199 Identities=8% Similarity=0.037 Sum_probs=127.5
Q ss_pred eEEEEeCCCCeE-EEEecCC---CcEEEeecCCCeEEEEE-cCCcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeE
Q 011970 189 GFVEFDDVNGKV-LTYSAQD---SIYKVFDLKNYTMLYSI-SDKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTV 262 (474)
Q Consensus 189 ~~V~Fs~~nGk~-LaS~s~D---~tiKlWdl~tg~~l~tl-~~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~ 262 (474)
.+-.|| |||+. +++.+.+ ..|.++|+.+|+...-. ....+...+|||++ .++.......+..|.++|+.+|+.
T Consensus 191 ~~p~wS-pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~ 269 (419)
T PRK04043 191 IFPKWA-NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL 269 (419)
T ss_pred EeEEEC-CCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE
Confidence 367898 79984 7765543 56888899998743322 23456678899854 565544434456688889988874
Q ss_pred EEEEeecCcceeEEEEEecCCCeEEEEe-CCC--cEEEEECCCCceEEecc-ccCCceEEEEEcCCCcEEEEEc-C----
Q 011970 263 LKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFR-N---- 333 (474)
Q Consensus 263 L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~--tIkIWDv~tg~~~~~l~-~h~~~v~sv~Fspdg~llaS~s-D---- 333 (474)
+.+..+........|+ |+|.+|+..+ ..+ .|-+.|+.+|+..++.. +.. ...|||||+.++-.+ .
T Consensus 270 -~~LT~~~~~d~~p~~S-PDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~----~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 270 -TQITNYPGIDVNGNFV-EDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN----NSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred -EEcccCCCccCccEEC-CCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc----CceECCCCCEEEEEEcCCCcc
Confidence 4454333333456776 6888888865 333 57777999998866543 222 247999999988765 3
Q ss_pred ---C--cEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEec
Q 011970 334 ---R--TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 408 (474)
Q Consensus 334 ---~--tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 408 (474)
+ .|.+.|+++.-.+.|..... .....|||||+.|+-... .+....+-+.++ +|.-...|.
T Consensus 344 ~~~~~~~I~v~d~~~g~~~~LT~~~~------~~~p~~SPDG~~I~f~~~--------~~~~~~L~~~~l-~g~~~~~l~ 408 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIRRLTANGV------NQFPRFSSDGGSIMFIKY--------LGNQSALGIIRL-NYNKSFLFP 408 (419)
T ss_pred cCCCCcEEEEEECCCCCeEECCCCCC------cCCeEECCCCCEEEEEEc--------cCCcEEEEEEec-CCCeeEEee
Confidence 2 56677876333455654321 135789999999886654 122344777776 566555554
Q ss_pred C
Q 011970 409 A 409 (474)
Q Consensus 409 g 409 (474)
.
T Consensus 409 ~ 409 (419)
T PRK04043 409 L 409 (419)
T ss_pred c
Confidence 3
No 263
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.86 E-value=3.8e-08 Score=104.55 Aligned_cols=102 Identities=20% Similarity=0.308 Sum_probs=89.2
Q ss_pred ccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEE
Q 011970 250 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 329 (474)
Q Consensus 250 ~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~lla 329 (474)
.|+-=|-+-.| .+...+|++ |+..|+.-+.|+.+||+|..+-+++-+.+.-+.....|.|||||++++
T Consensus 281 NPv~~w~~~~g-----------~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIv 348 (636)
T KOG2394|consen 281 NPVARWHIGEG-----------SINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIV 348 (636)
T ss_pred CccceeEeccc-----------cccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEE
Confidence 56666665443 456677884 788888889999999999999999999888899999999999999999
Q ss_pred EEc-CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECC
Q 011970 330 TFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITS 368 (474)
Q Consensus 330 S~s-D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSp 368 (474)
+|. |.-|.||.+ +++.|..=.||..| |+.|+|-|
T Consensus 349 tGGEDDLVtVwSf~erRVVARGqGHkSW-----Vs~VaFDp 384 (636)
T KOG2394|consen 349 TGGEDDLVTVWSFEERRVVARGQGHKSW-----VSVVAFDP 384 (636)
T ss_pred ecCCcceEEEEEeccceEEEeccccccc-----eeeEeecc
Confidence 999 999999999 59999999999999 68999985
No 264
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.85 E-value=3.5e-06 Score=80.25 Aligned_cols=210 Identities=15% Similarity=0.106 Sum_probs=133.2
Q ss_pred CCcEEEeecCCCeEEEEEcC----CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecC
Q 011970 207 DSIYKVFDLKNYTMLYSISD----KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF 282 (474)
Q Consensus 207 D~tiKlWdl~tg~~l~tl~~----~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~ 282 (474)
+++|..||+++|+.+.+..- ......++.+++.+.+++ .++.|..||+.||+.+.++... ..+...-. ..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~--~~ 75 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS---GDGNLYALDAKTGKVLWRFDLP-GPISGAPV--VD 75 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE---TTSEEEEEETTTSEEEEEEECS-SCGGSGEE--EE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc---CCCEEEEEECCCCCEEEEeecc-ccccceee--ec
Confidence 68899999999999887742 222222343566666653 4689999999999999888742 22211111 23
Q ss_pred CCeEEEEeCCCcEEEEECCCCceEEe-ccccC---CceEEEEEcCCCcEEEEEc-CCcEEEEeC-CCcEEEEeccCCCCc
Q 011970 283 NEKLLVKQENENLQILDVRNAELMEV-SRTEF---MTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWH 356 (474)
Q Consensus 283 ~~~ll~~~~D~tIkIWDv~tg~~~~~-l~~h~---~~v~sv~Fspdg~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~~ 356 (474)
++.+++...|+.|..+|..+|+.+-. ..... ..........++..++.+. ++.|...|. +|+.+-....+....
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 68888888888999999999998865 22221 1111222232355555555 999999998 499988777644221
Q ss_pred CCCC------eeEEEECCCCCEEEEEecCCCccccccCCCC-eEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccc
Q 011970 357 PDCN------TNNIYITSDQDLIISYCKAEPEDQWMEGSAG-SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSK 429 (474)
Q Consensus 357 ~~~~------v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg-tIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~ 429 (474)
. .. ...-.+..++.+.++. . ++ .+.+ |+.+|+.+..... .
T Consensus 156 ~-~~~~~~~~~~~~~~~~~~~v~~~~-~-----------~g~~~~~-d~~tg~~~w~~~~-~------------------ 202 (238)
T PF13360_consen 156 S-SPISSFSDINGSPVISDGRVYVSS-G-----------DGRVVAV-DLATGEKLWSKPI-S------------------ 202 (238)
T ss_dssp S---EEEETTEEEEEECCTTEEEEEC-C-----------TSSEEEE-ETTTTEEEEEECS-S------------------
T ss_pred C-cceeeecccccceEEECCEEEEEc-C-----------CCeEEEE-ECCCCCEEEEecC-C------------------
Confidence 0 00 1222333455555543 2 55 5788 9999997754331 1
Q ss_pred cccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 430 KLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 430 ~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.+.+ ...+++..|+.++.|+.|..||
T Consensus 203 -----------------~~~~-~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 203 -----------------GIYS-LPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp ------------------ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred -----------------CccC-CceeeCCEEEEEeCCCEEEEEE
Confidence 2222 2568889999999999999987
No 265
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.84 E-value=6e-09 Score=72.86 Aligned_cols=39 Identities=26% Similarity=0.645 Sum_probs=37.4
Q ss_pred CeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 401 GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 401 G~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
|+|++++++|+. .|++|+|+|+++.|+||+.|++|++||
T Consensus 1 g~~~~~~~~h~~----------------------------------~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSS----------------------------------SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSS----------------------------------SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCC----------------------------------cEEEEEEecccccceeeCCCCEEEEEC
Confidence 689999999996 899999999999999999999999997
No 266
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.84 E-value=3.6e-08 Score=101.61 Aligned_cols=174 Identities=13% Similarity=0.155 Sum_probs=113.2
Q ss_pred EEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCce-EEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEe
Q 011970 202 TYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIM-LLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE 280 (474)
Q Consensus 202 aS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~-la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~ 280 (474)
|..+.+..+.+|+..+- +....-+++.++.+. ++-+ .......|+|+.. .. ..+-.++.|..
T Consensus 55 ~~~s~~~~~a~~~~~~s------~~~~llAv~~~~K~~~~f~~--~~~~~~~kl~~~~--------~v-~~~~~ai~~~~ 117 (390)
T KOG3914|consen 55 AKASEILSLAPALVLTS------DSGRLVAVATSSKQRAVFDY--RENPKGAKLLDVS--------CV-PKRPTAISFIR 117 (390)
T ss_pred hhhhhhhhccccccccC------CCceEEEEEeCCCceEEEEE--ecCCCcceeeeEe--------ec-ccCcceeeeee
Confidence 33444555666664320 123444555665332 2222 1223346666642 21 12345666764
Q ss_pred cCCCeEEE--EeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCc-EEEEe-ccCCCC
Q 011970 281 QFNEKLLV--KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE-LVTSF-EDHLLW 355 (474)
Q Consensus 281 ~~~~~ll~--~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~-ll~tl-~gH~~~ 355 (474)
.+-.-+++ +++...+.+|.+..+.+.. .-||-..+..|++|||++.++|+. |..|||=..-+. -+.+| -||...
T Consensus 118 ~~~sv~v~dkagD~~~~di~s~~~~~~~~-~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eF 196 (390)
T KOG3914|consen 118 EDTSVLVADKAGDVYSFDILSADSGRCEP-ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEF 196 (390)
T ss_pred ccceEEEEeecCCceeeeeecccccCcch-hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhh
Confidence 43333333 3688999999988855544 467888999999999999999998 999999887432 33333 389987
Q ss_pred cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 356 HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 356 ~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
|..++..++ +.|+|+|. |+||++||+.+|+|+.++.-.
T Consensus 197 -----VS~isl~~~-~~LlS~sG-----------D~tlr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 197 -----VSTISLTDN-YLLLSGSG-----------DKTLRLWDITSGKLLDTCDLS 234 (390)
T ss_pred -----eeeeeeccC-ceeeecCC-----------CCcEEEEecccCCcccccchh
Confidence 678888765 55888765 999999999999999877443
No 267
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.82 E-value=1.9e-05 Score=82.49 Aligned_cols=272 Identities=14% Similarity=0.127 Sum_probs=157.5
Q ss_pred EeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEE----------EEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 95 VAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIR----------SLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 95 ~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~----------sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
++.++.|+.++.+|.+..+|.+||+.+=..+......+. +++. +++.|+.++ .+ ..+.
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~----~~------g~l~ 133 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGS----EK------GQVY 133 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEc----CC------CEEE
Confidence 456889999999999999999999987655432211010 0111 234444322 33 4566
Q ss_pred EeEeccCCCCCccceeeeccccCceE-EEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCC-cEEEE--EEcC---C
Q 011970 165 IEYIRRGKPDSGFALFESESLKWPGF-VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-HVQEI--KISP---G 237 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~~~~~~~~~-V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~-~V~~v--afSp---g 237 (474)
-.|..+|+. +|+...-..+.+ -... +|++++ ++.|+.+.-.|.+||+.+...... ....+ .-+| +
T Consensus 134 ald~~tG~~-----~W~~~~~~~~~ssP~v~--~~~v~v-~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~ 205 (394)
T PRK11138 134 ALNAEDGEV-----AWQTKVAGEALSRPVVS--DGLVLV-HTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF 205 (394)
T ss_pred EEECCCCCC-----cccccCCCceecCCEEE--CCEEEE-ECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC
Confidence 677788996 444321111111 1222 565554 567889999999999998877532 11000 1123 3
Q ss_pred ceEEEEecCCCCccEEEEecCCCeEEEEEeecCc-------ceeEEEEEe-cCCCeEEEEeCCCcEEEEECCCCceEEec
Q 011970 238 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH-------RNKKVDFIE-QFNEKLLVKQENENLQILDVRNAELMEVS 309 (474)
Q Consensus 238 ~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~-------~v~~V~F~~-~~~~~ll~~~~D~tIkIWDv~tg~~~~~l 309 (474)
+.++.. ..++.+.-.|.++|+.+-.++.... +...+.-.| ..++.+.+.+.|+.+..+|+.+|+.+-..
T Consensus 206 ~~v~~~---~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 206 GGAIVG---GDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CEEEEE---cCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 344443 3367788899999998766542110 000111010 12678888889999999999999876432
Q ss_pred cccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccC
Q 011970 310 RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEG 388 (474)
Q Consensus 310 ~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s 388 (474)
. ......++ -.++++++...|+.+...|.+ |+.+-..+.-..+. ..+.++ -+|. |..++.
T Consensus 283 ~--~~~~~~~~-~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~----~~sp~v-~~g~-l~v~~~---------- 343 (394)
T PRK11138 283 E--YGSVNDFA-VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL----LTAPVL-YNGY-LVVGDS---------- 343 (394)
T ss_pred c--CCCccCcE-EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc----ccCCEE-ECCE-EEEEeC----------
Confidence 1 11111221 235666665559999999984 88765433211111 111222 1444 444544
Q ss_pred CCCeEEEEeCCCCeEEEEecC
Q 011970 389 SAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 389 ~DgtIklWdi~tG~cl~tl~g 409 (474)
||.|...|..||+.+...+-
T Consensus 344 -~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 344 -EGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred -CCEEEEEECCCCCEEEEEEc
Confidence 89999999999999987754
No 268
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.77 E-value=6.4e-07 Score=90.59 Aligned_cols=192 Identities=10% Similarity=0.109 Sum_probs=150.8
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecCCC---eEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEec-CC
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY---TMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSI-ED 259 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg---~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi-~t 259 (474)
.+..-+|+ +|++.+|-+-+...|-|+...+. +..++++ +..|..|.++| ...|++. +.|....+|.. .+
T Consensus 12 pitchAwn-~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtc---s~drnayVw~~~~~ 87 (361)
T KOG1523|consen 12 PITCHAWN-SDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTC---SHDRNAYVWTQPSG 87 (361)
T ss_pred ceeeeeec-CCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEc---cCCCCccccccCCC
Confidence 44467998 79999999999999999987654 4677886 46799999998 6688876 66889999998 67
Q ss_pred CeEEEEEe--ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCce----EEeccccCCceEEEEEcCCCcEEEEEc-
Q 011970 260 GTVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL----MEVSRTEFMTPSAFIFLYENQLFLTFR- 332 (474)
Q Consensus 260 G~~L~tl~--~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~----~~~l~~h~~~v~sv~Fspdg~llaS~s- 332 (474)
|+--.+|. -|......|.++ |-..+++++|.-..|-||-.+.-+- .++-+.+..+|.++.+.|++-|||.||
T Consensus 88 ~~WkptlvLlRiNrAAt~V~Ws-P~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWS-PKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred CeeccceeEEEeccceeeEeec-CcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 76555554 345677899998 5567888899999999998776442 223334566889999999999999999
Q ss_pred CCcEEEEeC------------------C-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeE
Q 011970 333 NRTVAVWNF------------------R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSI 393 (474)
Q Consensus 333 D~tIklWd~------------------~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtI 393 (474)
|+..+|... - |++...+....+| |..+.|||+|..||=.+. |.+|
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggw-----vh~v~fs~sG~~lawv~H-----------ds~v 230 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGW-----VHGVLFSPSGNRLAWVGH-----------DSTV 230 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCc-----eeeeEeCCCCCEeeEecC-----------CCce
Confidence 999998761 1 5566666666678 689999999999997665 9999
Q ss_pred EEEeCC
Q 011970 394 NVSSIL 399 (474)
Q Consensus 394 klWdi~ 399 (474)
.+=|-.
T Consensus 231 ~~~da~ 236 (361)
T KOG1523|consen 231 SFVDAA 236 (361)
T ss_pred EEeecC
Confidence 998854
No 269
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.74 E-value=4.5e-06 Score=88.66 Aligned_cols=283 Identities=13% Similarity=0.124 Sum_probs=182.6
Q ss_pred ccccEEEEEee--ccEEEEeeCCCe---------------EEeeeccccceeeEeecCCCce--EE-EEEEeeCCCEEEE
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGV---------------CAAFSRETNRRICFLNVSPDEV--IR-SLFYNKNNDSLIT 146 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgt---------------iklW~~~tg~~l~~l~g~~~~~--i~-sv~fspdg~~Lis 146 (474)
.-.-|+.+-|+ +.+|.+=+..+. |.+||..+|+.+..+++ .... .| -+-|+-|..++|=
T Consensus 70 ~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~-~~q~~~~Wp~~k~s~~D~y~AR 148 (561)
T COG5354 70 RHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNG-ISQPYLGWPVLKFSIDDKYVAR 148 (561)
T ss_pred ecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccc-cCCcccccceeeeeecchhhhh
Confidence 33458888888 888888777666 99999999999999987 4344 66 7889999887765
Q ss_pred EEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCC-CCeEEEE-----ecCCCcEEEeecCCCeE
Q 011970 147 VSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDV-NGKVLTY-----SAQDSIYKVFDLKNYTM 220 (474)
Q Consensus 147 ~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~-nGk~LaS-----~s~D~tiKlWdl~tg~~ 220 (474)
+. + ..+.|.++ ++..... + |..-....+...+|+|. |+..||+ ...+.++++|.+.-++.
T Consensus 149 vv--~---------~sl~i~e~-t~n~~~~-p-~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~ 214 (561)
T COG5354 149 VV--G---------SSLYIHEI-TDNIEEH-P-FKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV 214 (561)
T ss_pred hc--c---------CeEEEEec-CCccccC-c-hhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe
Confidence 42 2 34555554 4443211 1 11101223345677765 6777776 45789999999986665
Q ss_pred EEEEcCCcEEE--EEEcC-CceEEEEecC------CC--CccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEE-
Q 011970 221 LYSISDKHVQE--IKISP-GIMLLIFNRS------SS--HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV- 288 (474)
Q Consensus 221 l~tl~~~~V~~--vafSp-g~~la~~s~~------s~--D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~- 288 (474)
+.+-.--.|.. +++.+ |..|+.-.-. +. ..++.|.+++ +.-+....+..+.|....|.|. ...+++
T Consensus 215 l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~-e~~i~V~~~~~~pVhdf~W~p~-S~~F~vi 292 (561)
T COG5354 215 LVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT-ERSIPVEKDLKDPVHDFTWEPL-SSRFAVI 292 (561)
T ss_pred eeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec-ccccceeccccccceeeeeccc-CCceeEE
Confidence 54332122333 44445 4443322111 11 1468899986 3444444345688999999754 444444
Q ss_pred E-eCCCcEEEEECCCCceEEe-ccccCCceEEEEEcCCCcEEEEEc----CCcEEEEeCCCc--EEEEeccCCCCcCCCC
Q 011970 289 K-QENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR----NRTVAVWNFRGE--LVTSFEDHLLWHPDCN 360 (474)
Q Consensus 289 ~-~~D~tIkIWDv~tg~~~~~-l~~h~~~v~sv~Fspdg~llaS~s----D~tIklWd~~G~--ll~tl~gH~~~~~~~~ 360 (474)
. -.+-++-+.|++.. +... ..+ .=..+.|||.+++++.+. -|.|-+||.-|+ ++..|.+-..
T Consensus 293 ~g~~pa~~s~~~lr~N-l~~~~Pe~---~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~------ 362 (561)
T COG5354 293 SGYMPASVSVFDLRGN-LRFYFPEQ---KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT------ 362 (561)
T ss_pred ecccccceeecccccc-eEEecCCc---ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCc------
Confidence 4 48999999999876 3322 222 224567999999999965 568999999665 4557876432
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 361 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
.=+.|||||+++-+...++..- .|..|+|||+ +|..
T Consensus 363 -s~~~wspd~qF~~~~~ts~k~~-----~Dn~i~l~~v-~g~~ 398 (561)
T COG5354 363 -SYCDWSPDGQFYDTDTTSEKLR-----VDNSIKLWDV-YGAK 398 (561)
T ss_pred -eEeeccCCceEEEecCCCcccc-----cCcceEEEEe-cCch
Confidence 3467999999999887654422 3999999998 4543
No 270
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.74 E-value=3.4e-06 Score=85.89 Aligned_cols=225 Identities=16% Similarity=0.202 Sum_probs=140.2
Q ss_pred EEEEEEee-CCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEec-----
Q 011970 132 IRSLFYNK-NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA----- 205 (474)
Q Consensus 132 i~sv~fsp-dg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s----- 205 (474)
-..++.+| .+..++.+-. .....-++|.++|+..+. +...+..-.-+-..|| +||++|-+.-
T Consensus 7 gH~~a~~p~~~~avafaRR---------PG~~~~v~D~~~g~~~~~--~~a~~gRHFyGHg~fs-~dG~~LytTEnd~~~ 74 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARR---------PGTFALVFDCRTGQLLQR--LWAPPGRHFYGHGVFS-PDGRLLYTTENDYET 74 (305)
T ss_pred ccceeeCCCCCeEEEEEeC---------CCcEEEEEEcCCCceeeE--EcCCCCCEEecCEEEc-CCCCEEEEeccccCC
Confidence 34677788 4444444332 125667888899987542 1111111111237898 7999887643
Q ss_pred CCCcEEEeecC-CCeEEEEEcCCcE--EEEEEcCCc-eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEec
Q 011970 206 QDSIYKVFDLK-NYTMLYSISDKHV--QEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQ 281 (474)
Q Consensus 206 ~D~tiKlWdl~-tg~~l~tl~~~~V--~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~ 281 (474)
..|.|-|||+. +++.+-.++.+.| -++.+.|++ +|+++..+ -.| ..++|.
T Consensus 75 g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG--I~T----hpd~GR-------------------- 128 (305)
T PF07433_consen 75 GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG--IET----HPDSGR-------------------- 128 (305)
T ss_pred CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC--Ccc----CcccCc--------------------
Confidence 46799999998 7888888875444 578888866 88877422 101 001111
Q ss_pred CCCeEEEEeCCCcEEEEECCCCceEEe--c--cccCCceEEEEEcCCCcEEEEEc-CC-------cEEEEeCCCcEEEEe
Q 011970 282 FNEKLLVKQENENLQILDVRNAELMEV--S--RTEFMTPSAFIFLYENQLFLTFR-NR-------TVAVWNFRGELVTSF 349 (474)
Q Consensus 282 ~~~~ll~~~~D~tIkIWDv~tg~~~~~--l--~~h~~~v~sv~Fspdg~llaS~s-D~-------tIklWd~~G~ll~tl 349 (474)
.+|=....+-++-..|..+|++++. + ..|...++=++..++|..+...- .+ -|-+++. |+.++.+
T Consensus 129 --~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~-g~~~~~~ 205 (305)
T PF07433_consen 129 --AKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR-GGALRLL 205 (305)
T ss_pred --eecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC-CCcceec
Confidence 1222233566777888899998875 6 45888899999999998776542 21 1233332 3333333
Q ss_pred ccCCC-C-cCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe
Q 011970 350 EDHLL-W-HPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI 407 (474)
Q Consensus 350 ~gH~~-~-~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl 407 (474)
..-.. | --+-++-+|+|++||.++|..|. .-+.+-+||..||+++...
T Consensus 206 ~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP----------rGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 206 PAPEEQWRRLNGYIGSIAADRDGRLIAVTSP----------RGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred cCChHHHHhhCCceEEEEEeCCCCEEEEECC----------CCCEEEEEECCCCCEeecc
Confidence 32110 0 00013789999999999987765 5899999999999998765
No 271
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.74 E-value=1.1e-07 Score=95.99 Aligned_cols=245 Identities=12% Similarity=0.131 Sum_probs=154.2
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecCC-CeEEEEE----c--------------CCcEEEEEEc-CCc---eEEEE
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSI----S--------------DKHVQEIKIS-PGI---MLLIF 243 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t-g~~l~tl----~--------------~~~V~~vafS-pg~---~la~~ 243 (474)
-+.+|+|+ ..|.+||+|...|-|-++.-+. +-|-|.+ + .+.|.+|.+- |++ .|++
T Consensus 28 ~ItaVefd-~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls- 105 (460)
T COG5170 28 KITAVEFD-ETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS- 105 (460)
T ss_pred eeeEEEec-cccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe-
Confidence 45589998 6899999998889999997543 3344422 1 1357888887 533 3443
Q ss_pred ecCCCCccEEEEecCCC--------------------eEE----------------------EEE-eecCcceeEEEEEe
Q 011970 244 NRSSSHVPLKILSIEDG--------------------TVL----------------------KVF-YHLLHRNKKVDFIE 280 (474)
Q Consensus 244 s~~s~D~tIkLWdi~tG--------------------~~L----------------------~tl-~~h~~~v~~V~F~~ 280 (474)
..|+|||||.+-.. -++ +.. +.|..++.++.|..
T Consensus 106 ---tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 106 ---TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred ---cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 45899999988542 000 001 23566778899863
Q ss_pred cCCCeEEEEeCCCcEEEEECCCCc-e--EEeccccCC-----ceEEEEEcCCCc-EEEEEc-CCcEEEEeCC--CcEE--
Q 011970 281 QFNEKLLVKQENENLQILDVRNAE-L--MEVSRTEFM-----TPSAFIFLYENQ-LFLTFR-NRTVAVWNFR--GELV-- 346 (474)
Q Consensus 281 ~~~~~ll~~~~D~tIkIWDv~tg~-~--~~~l~~h~~-----~v~sv~Fspdg~-llaS~s-D~tIklWd~~--G~ll-- 346 (474)
+...+.+..|-.|.||++.--. + +--.+.|.+ -+.+.-|+|+.- +|.-++ .|+|||-|++ .-|.
T Consensus 183 --D~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 183 --DKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred --chheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 4455556688999999977421 2 222345553 466777998654 333344 9999999995 2232
Q ss_pred -EEeccCCCCcCC-------CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEecCCCCCCCCc
Q 011970 347 -TSFEDHLLWHPD-------CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVD 417 (474)
Q Consensus 347 -~tl~gH~~~~~~-------~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gH~~~~~~~ 417 (474)
..|+...+.+.- ..+..+.|||+|+||+|-+ --|++|||+.- .+|+.|+.-|... +..
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd------------yltvkiwDvnm~k~pikTi~~h~~l-~~~ 327 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD------------YLTVKIWDVNMAKNPIKTIPMHCDL-MDE 327 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec------------cceEEEEecccccCCceeechHHHH-HHH
Confidence 233322221100 1256789999999999865 48999999854 5799999888740 000
Q ss_pred cccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcE
Q 011970 418 DELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLV 469 (474)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtV 469 (474)
++.--+ +.+.=.=.-+.||-|.+.+.|||..+..
T Consensus 328 l~d~YE------------------nDaifdkFeisfSgd~~~v~sgsy~NNf 361 (460)
T COG5170 328 LNDVYE------------------NDAIFDKFEISFSGDDKHVLSGSYSNNF 361 (460)
T ss_pred HHhhhh------------------ccceeeeEEEEecCCcccccccccccce
Confidence 000000 0111134568999999999999876543
No 272
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.71 E-value=4.2e-08 Score=114.96 Aligned_cols=179 Identities=13% Similarity=0.172 Sum_probs=137.5
Q ss_pred CCCeEEEEecCCCcEEEeecCCCeEEEEEc---CCcEEEEEEc-CCceEEEEecCCCCccEEEEecCCCeEEEEEeecCc
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH 271 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~---~~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~ 271 (474)
|--.+-.+||+||.||+|.-..++.+.++. ...|+.++|+ .|+...+. .+|+.+-+|.+. -+...+-+.|..
T Consensus 2218 p~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~---d~dg~l~l~q~~-pk~~~s~qchnk 2293 (2439)
T KOG1064|consen 2218 PSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIV---DGDGDLSLWQAS-PKPYTSWQCHNK 2293 (2439)
T ss_pred CCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeee---ccCCceeecccC-CcceeccccCCc
Confidence 445677789999999999988888776664 3679999999 68888876 458999999985 355555666666
Q ss_pred ceeEEEEEecCCCeEEEEe---CCCcEEEEECC-CCc--eEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-C
Q 011970 272 RNKKVDFIEQFNEKLLVKQ---ENENLQILDVR-NAE--LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G 343 (474)
Q Consensus 272 ~v~~V~F~~~~~~~ll~~~---~D~tIkIWDv~-tg~--~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G 343 (474)
....+.|+. .-++.+| +++++-+||-- .+. ++. ..|...++.+++-|.-|+|+||+ +|-|+|||++ .
T Consensus 2294 ~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2294 ALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred cccceeeee---hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence 667788873 3344443 78999999943 222 344 67999999999999999999999 9999999995 7
Q ss_pred cEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 344 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 344 ~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
++.++|.. + . -..++++|+. .|+||||++.+-..++++..
T Consensus 2369 ql~h~~~~---~-----------~-~~~~f~~~ss-----------~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2369 QLRHTFQA---L-----------D-TREYFVTGSS-----------EGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred HHHHHhhh---h-----------h-hhheeeccCc-----------ccceEEEEccccchhhcCch
Confidence 77776653 2 1 3567788765 89999999987778877754
No 273
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.70 E-value=9.1e-08 Score=104.67 Aligned_cols=300 Identities=11% Similarity=0.090 Sum_probs=176.4
Q ss_pred eecccCCCCCcccccccccccccEEEEEee--ccEEEEeeCCCeEEeeecc-ccceeeEeecCCCceEEEEEEeeCC---
Q 011970 68 EYDTHDPKGHCPFVLPFLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRE-TNRRICFLNVSPDEVIRSLFYNKNN--- 141 (474)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~-tg~~l~~l~g~~~~~i~sv~fspdg--- 141 (474)
++.-|+.|++..-+... -..++-++... |+-+|.++.-|..-+ |+. .+.+-+-|.--..-.|-.+-+||.-
T Consensus 6 ~~gpyns~tf~kslsl~--v~~~~~a~si~p~grdi~lAsr~gl~i~-dld~p~~ppr~l~h~tpw~vad~qws~h~a~~ 82 (1081)
T KOG0309|consen 6 NEGPYNSPTFGKSLSLK--VDGGFNAVSINPSGRDIVLASRQGLYII-DLDDPFTPPRWLHHITPWQVADVQWSPHPAKP 82 (1081)
T ss_pred ccCCCCCCccCceeEEE--ecCcccceeeccccchhhhhhhcCeEEE-eccCCCCCceeeeccCcchhcceecccCCCCc
Confidence 34555666655444333 33334444444 555555555554332 222 2444333332122234455566542
Q ss_pred CEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe-E
Q 011970 142 DSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-M 220 (474)
Q Consensus 142 ~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~-~ 220 (474)
.-+++.| . +..-+|+++.-. ++++.+.-++|...+..+.|.+.+-.+||+++.|..+-.||+.... .
T Consensus 83 ~wiVsts-----~------qkaiiwnlA~ss-~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p 150 (1081)
T KOG0309|consen 83 YWIVSTS-----N------QKAIIWNLAKSS-SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP 150 (1081)
T ss_pred eeEEecC-----c------chhhhhhhhcCC-ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc
Confidence 1233322 1 344578764332 1222222333455566788887777899999999999999998755 6
Q ss_pred EEEEc--CCcEEEEEEc--CCceEEEEecCCCCccEEEEecCCC-eEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcE
Q 011970 221 LYSIS--DKHVQEIKIS--PGIMLLIFNRSSSHVPLKILSIEDG-TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENL 295 (474)
Q Consensus 221 l~tl~--~~~V~~vafS--pg~~la~~s~~s~D~tIkLWdi~tG-~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tI 295 (474)
+|+.. ...-..|+++ ++..||++. -+-|.+||+.-| ..|.++++|...+..++|...--..+++.+.|+||
T Consensus 151 ~ys~~~w~s~asqVkwnyk~p~vlassh----g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tv 226 (1081)
T KOG0309|consen 151 FYSTSSWRSAASQVKWNYKDPNVLASSH----GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTV 226 (1081)
T ss_pred eeeeecccccCceeeecccCcchhhhcc----CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCce
Confidence 77765 3456678999 355555432 256999999855 78999999988899999864434667778899999
Q ss_pred EEEECCCCc--eEEeccccCCceEEEEEcCCC-----------cEEEEEc-CCcEEEEeC-C-CcEEEEeccCCCCcCCC
Q 011970 296 QILDVRNAE--LMEVSRTEFMTPSAFIFLYEN-----------QLFLTFR-NRTVAVWNF-R-GELVTSFEDHLLWHPDC 359 (474)
Q Consensus 296 kIWDv~tg~--~~~~l~~h~~~v~sv~Fspdg-----------~llaS~s-D~tIklWd~-~-G~ll~tl~gH~~~~~~~ 359 (474)
+.||-.... .-++ .+....+|.-.|.|-| ..+.--. +..-+.||+ + -+.+.+|.||.+.|.+-
T Consensus 227 kfw~y~kSt~e~~~~-vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eF 305 (1081)
T KOG0309|consen 227 KFWDYSKSTTESKRT-VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEF 305 (1081)
T ss_pred eeeccccccccccee-ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHH
Confidence 999976542 2222 2223355555555533 2222222 455567887 5 56799999999854210
Q ss_pred CeeEEEECCCCC------EEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 360 NTNNIYITSDQD------LIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 360 ~v~svafSpDg~------~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
.|-..=.-||+ .|++-|+ |.++|||-|.
T Consensus 306 -lWR~r~e~~~d~d~rdfQLVTWSk-----------D~~lrlWpI~ 339 (1081)
T KOG0309|consen 306 -LWRKRKECDGDYDSRDFQLVTWSK-----------DQTLRLWPID 339 (1081)
T ss_pred -hhhhcccccCCCCccceeEEEeec-----------CCceEeeecc
Confidence 01111111222 4778877 9999999874
No 274
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=2.3e-07 Score=94.98 Aligned_cols=156 Identities=11% Similarity=0.124 Sum_probs=113.8
Q ss_pred EEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccc-cCCceEEEEEcCCCcEEE-
Q 011970 252 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRT-EFMTPSAFIFLYENQLFL- 329 (474)
Q Consensus 252 IkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~-h~~~v~sv~Fspdg~lla- 329 (474)
+++|.- -+|+-+.-|+|. -.++++..|.+|+|+|-.. .|...++. -+..|.+++|-|-+..-+
T Consensus 93 vt~ws~---~dlr~~aWhqH~-----------~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsasela 157 (445)
T KOG2139|consen 93 VTLWSE---IDLRGVAWHQHI-----------IAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELA 157 (445)
T ss_pred hhhhhh---cceeeEeechhh-----------hhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceee
Confidence 566762 456666655431 2455567899999999665 55554443 445789999998766544
Q ss_pred EEcCCcEEEEeCC--CcEE-----------EE--eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEE
Q 011970 330 TFRNRTVAVWNFR--GELV-----------TS--FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 394 (474)
Q Consensus 330 S~sD~tIklWd~~--G~ll-----------~t--l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIk 394 (474)
-+.-+-|-||..+ +..- +. -.||. .|.++.+.+||..|+++|. .|..|.
T Consensus 158 vgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~------pVtsmqwn~dgt~l~tAS~----------gsssi~ 221 (445)
T KOG2139|consen 158 VGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHN------PVTSMQWNEDGTILVTASF----------GSSSIM 221 (445)
T ss_pred eeecceeEEEEcCcccccccccccccccchhheeCCCCc------eeeEEEEcCCCCEEeeccc----------CcceEE
Confidence 4558889999973 3221 12 23452 2799999999999999886 378999
Q ss_pred EEeCCCCeEEEEe-cCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 395 VSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 395 lWdi~tG~cl~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
|||+.||+|+.-. ++- ..++-|-|||||..|..+.-|++.+||+
T Consensus 222 iWdpdtg~~~pL~~~gl-----------------------------------gg~slLkwSPdgd~lfaAt~davfrlw~ 266 (445)
T KOG2139|consen 222 IWDPDTGQKIPLIPKGL-----------------------------------GGFSLLKWSPDGDVLFAATCDAVFRLWQ 266 (445)
T ss_pred EEcCCCCCcccccccCC-----------------------------------CceeeEEEcCCCCEEEEecccceeeeeh
Confidence 9999999987544 221 2788899999999999999999999994
No 275
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.69 E-value=9.3e-08 Score=112.21 Aligned_cols=210 Identities=18% Similarity=0.202 Sum_probs=158.0
Q ss_pred CCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEee-cCcce
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH-LLHRN 273 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~-h~~~v 273 (474)
+.|+..+.+..+.+.--|..+.+..+..-+-++|..+.=+| ....+++ +.|+.|++|--..|+.+.++.. -..+|
T Consensus 2178 ~~s~~~~~~n~~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltg---s~dgsv~~~~w~~~~~v~~~rt~g~s~v 2254 (2439)
T KOG1064|consen 2178 SFSNRFTPSNLPWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTG---SQDGSVRMFEWGHGQQVVCFRTAGNSRV 2254 (2439)
T ss_pred cccccCCcccCCccccceecccceeEeecccCceeeecCCCCCceEEec---CCCceEEEEeccCCCeEEEeeccCcchh
Confidence 45667777777877777776544433333345677666667 5556665 5689999999989999888872 23788
Q ss_pred eEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEE---c-CCcEEEEeC--CC--cE
Q 011970 274 KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF---R-NRTVAVWNF--RG--EL 345 (474)
Q Consensus 274 ~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~---s-D~tIklWd~--~G--~l 345 (474)
....|+.+ |++..++-.||-+-+|.+. .+..-..+-|......|.|-- .+++++ + ++.+-+||. .+ -|
T Consensus 2255 tr~~f~~q-Gnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~ 2330 (2439)
T KOG1064|consen 2255 TRSRFNHQ-GNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL 2330 (2439)
T ss_pred hhhhhccc-CCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce
Confidence 99999854 8889999999999999976 444444566888888999976 667765 2 779999996 33 26
Q ss_pred EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCC
Q 011970 346 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSST 425 (474)
Q Consensus 346 l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~ 425 (474)
+. +.|... +..+++-|..++|+||++ +|-|+|||+...|+.++++.
T Consensus 2331 v~--~~H~~g-----aT~l~~~P~~qllisggr-----------~G~v~l~D~rqrql~h~~~~---------------- 2376 (2439)
T KOG1064|consen 2331 VH--TCHDGG-----ATVLAYAPKHQLLISGGR-----------KGEVCLFDIRQRQLRHTFQA---------------- 2376 (2439)
T ss_pred ee--eecCCC-----ceEEEEcCcceEEEecCC-----------cCcEEEeehHHHHHHHHhhh----------------
Confidence 66 667665 567999999999999877 99999999988777766643
Q ss_pred CccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 426 GKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.+ ...++++|+..|.||||+.
T Consensus 2377 ---------------------------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2377 ---------------------------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred ---------------------------hh-hhheeeccCcccceEEEEc
Confidence 12 4567899999999999974
No 276
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.65 E-value=2.8e-06 Score=86.79 Aligned_cols=244 Identities=9% Similarity=0.087 Sum_probs=151.7
Q ss_pred cceeecccCCCCCcccccccccccccEEEEEeeccEEEEeeCCCeEEeee-ccccceeeEeecCCCceEEEEEEeeCCCE
Q 011970 65 LVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFS-RETNRRICFLNVSPDEVIRSLFYNKNNDS 143 (474)
Q Consensus 65 l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~-~~tg~~l~~l~g~~~~~i~sv~fspdg~~ 143 (474)
|..-|++|....+..+..|. .+.|+++|+|.++|+|- ++.||.-..+.-+....++++.|+++-..
T Consensus 16 ll~~~eG~~d~vn~~~l~~~-------------e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~ 82 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPK-------------EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRR 82 (404)
T ss_pred hhhhhcCchhhhhhheeccC-------------CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceE
Confidence 33445666666666666666 78899999999999995 67788766665555577899999998876
Q ss_pred EEEEEeecCCCccceeeeEEEEeEeccCCCCCcc--ceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeec-CCCeE
Q 011970 144 LITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF--ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL-KNYTM 220 (474)
Q Consensus 144 Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~--~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl-~tg~~ 220 (474)
|..+= ++ .++.=.. -.-.+++-. .++. .|...+..+-|+. --+.+.|.+.|..+ .|.- +.|..
T Consensus 83 L~vg~----~n------gtvtefs-~sedfnkm~~~r~~~-~h~~~v~~~if~~-~~e~V~s~~~dk~~-~~hc~e~~~~ 148 (404)
T KOG1409|consen 83 LYVGQ----DN------GTVTEFA-LSEDFNKMTFLKDYL-AHQARVSAIVFSL-THEWVLSTGKDKQF-AWHCTESGNR 148 (404)
T ss_pred EEEEE----ec------ceEEEEE-hhhhhhhcchhhhhh-hhhcceeeEEecC-CceeEEEeccccce-EEEeeccCCc
Confidence 66521 33 1211111 111111100 0111 2344455678875 45677888888766 5642 34443
Q ss_pred E--EEEc--C-C--cEEEEEEcCCceEEEEecCCCCcc-EEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCC
Q 011970 221 L--YSIS--D-K--HVQEIKISPGIMLLIFNRSSSHVP-LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN 292 (474)
Q Consensus 221 l--~tl~--~-~--~V~~vafSpg~~la~~s~~s~D~t-IkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D 292 (474)
+ |.+. . . ..-..+|-.+ .+...+ +|+-. +.=.++.++.+|...+....+- +-++.|.++.+|
T Consensus 149 lg~Y~~~~~~t~~~~d~~~~fvGd--------~~gqvt~lr~~~-~~~~~i~~~~~h~~~~~~l~Wd-~~~~~LfSg~~d 218 (404)
T KOG1409|consen 149 LGGYNFETPASALQFDALYAFVGD--------HSGQITMLKLEQ-NGCQLITTFNGHTGEVTCLKWD-PGQRLLFSGASD 218 (404)
T ss_pred ccceEeeccCCCCceeeEEEEecc--------cccceEEEEEee-cCCceEEEEcCcccceEEEEEc-CCCcEEEecccc
Confidence 2 2221 0 0 1111333311 011112 23322 3445678899999999999986 345566667899
Q ss_pred CcEEEEECCCCceE-EeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcE
Q 011970 293 ENLQILDVRNAELM-EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGEL 345 (474)
Q Consensus 293 ~tIkIWDv~tg~~~-~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~l 345 (474)
..+-+||+--++-+ ..+.+|.+.|.++...+--+.+.|.. ||.|.+||.+-+.
T Consensus 219 ~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 219 HSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred CceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 99999999876654 45789999999998777767777777 9999999986443
No 277
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=1.1e-07 Score=96.90 Aligned_cols=171 Identities=15% Similarity=0.141 Sum_probs=118.5
Q ss_pred EEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEEC
Q 011970 221 LYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 300 (474)
Q Consensus 221 l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv 300 (474)
+.+|+...-|++|+|=+.+---+ +.+.+..|-|-|++||- -+.|. -..-|++..|. ..+..+..|..+|.|-..|+
T Consensus 206 ~~SlQi~~a~~CawSlni~gyhf-s~G~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~-~s~nLv~~GcRngeI~~iDL 281 (425)
T KOG2695|consen 206 LCSLQIPKAWSCAWSLNIMGYHF-SVGLSQQVLLTNVETGH-QQSFQ-SKSDVFALQFA-GSDNLVFNGCRNGEIFVIDL 281 (425)
T ss_pred eeeecCCcchhhhhhhccceeee-cccccceeEEEEeeccc-ccccc-cchhHHHHHhc-ccCCeeEecccCCcEEEEEe
Confidence 34454444455566632221111 13456778888999863 34444 23567888886 33445555789999999999
Q ss_pred CCC-----ceEEeccccCCceEEEEEcC-CCcEEEEEc-CCcEEEEeCC-CcE---EEEeccCCCCcCCCCeeEEEECCC
Q 011970 301 RNA-----ELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-GEL---VTSFEDHLLWHPDCNTNNIYITSD 369 (474)
Q Consensus 301 ~tg-----~~~~~l~~h~~~v~sv~Fsp-dg~llaS~s-D~tIklWd~~-G~l---l~tl~gH~~~~~~~~v~svafSpD 369 (474)
+.+ .|.+.+ -|...|.++-... ++|.|++++ +|+|+|||.+ -+| +++.+||.+-+. . .-+-+.|.
T Consensus 282 R~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a--~-l~~~v~~e 357 (425)
T KOG2695|consen 282 RCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA--Y-LPAHVKEE 357 (425)
T ss_pred eecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccc--c-cccccccc
Confidence 975 454443 3666788877776 788888888 9999999996 677 999999976431 1 23446677
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 370 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 370 g~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
...|+|++. |.-.|||.+..|+++.+++-.
T Consensus 358 eg~I~s~Gd-----------DcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 358 EGSIFSVGD-----------DCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cceEEEccC-----------eeEEEEEecccCceeeccCCC
Confidence 788888765 999999999999999998543
No 278
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.64 E-value=7.1e-08 Score=67.38 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=36.8
Q ss_pred CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEe
Q 011970 343 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSS 397 (474)
Q Consensus 343 G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWd 397 (474)
|+++++|++|... |++|+|+|++++|||+|. |++|+|||
T Consensus 1 g~~~~~~~~h~~~-----i~~i~~~~~~~~~~s~~~-----------D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSS-----INSIAWSPDGNFLASGSS-----------DGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSS-----EEEEEEETTSSEEEEEET-----------TSEEEEEE
T ss_pred CeEEEEEcCCCCc-----EEEEEEecccccceeeCC-----------CCEEEEEC
Confidence 6899999999987 799999999999999987 99999997
No 279
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.62 E-value=2.9e-07 Score=100.84 Aligned_cols=292 Identities=9% Similarity=0.076 Sum_probs=169.7
Q ss_pred CceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEe-ccCCCCCccceeeeccccC-ceEEEEeCC--CCeEEEEe
Q 011970 129 DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI-RRGKPDSGFALFESESLKW-PGFVEFDDV--NGKVLTYS 204 (474)
Q Consensus 129 ~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i-~~G~~~~~~~lf~~~~~~~-~~~V~Fs~~--nGk~LaS~ 204 (474)
+.++..+..+|-|+.+|.||.+| ..+-|+ ..+.+ +.+-+-...| +..+.+++. --..+++-
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-----------l~i~dld~p~~p----pr~l~h~tpw~vad~qws~h~a~~~wiVst 88 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-----------LYIIDLDDPFTP----PRWLHHITPWQVADVQWSPHPAKPYWIVST 88 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-----------eEEEeccCCCCC----ceeeeccCcchhcceecccCCCCceeEEec
Confidence 45678899999999999988654 112232 11222 2222100111 223444421 12456666
Q ss_pred cCCCcEEEeecCCCe---EEEEEcC--CcEEEEEEcCC--ceEEEEecCCCCccEEEEecCCC-eEEEEEeecCcceeEE
Q 011970 205 AQDSIYKVFDLKNYT---MLYSISD--KHVQEIKISPG--IMLLIFNRSSSHVPLKILSIEDG-TVLKVFYHLLHRNKKV 276 (474)
Q Consensus 205 s~D~tiKlWdl~tg~---~l~tl~~--~~V~~vafSpg--~~la~~s~~s~D~tIkLWdi~tG-~~L~tl~~h~~~v~~V 276 (474)
+.-.+| +|+++-.. .-..+++ ..|.++-|.|+ ..||+. +-|-.+..||+..- ..+..+..-......|
T Consensus 89 s~qkai-iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatc---svdt~vh~wd~rSp~~p~ys~~~w~s~asqV 164 (1081)
T KOG0309|consen 89 SNQKAI-IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATC---SVDTYVHAWDMRSPHRPFYSTSSWRSAASQV 164 (1081)
T ss_pred Ccchhh-hhhhhcCCccceEEEEecCccceeccccCCCCCcceeec---cccccceeeeccCCCcceeeeecccccCcee
Confidence 655555 89986322 3345554 57999999973 345554 66788999998753 3344444222344667
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCc-eEEeccccCCceEEEEEc--CCCcEEEEEcCCcEEEEeCC---CcEEEEec
Q 011970 277 DFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRTEFMTPSAFIFL--YENQLFLTFRNRTVAVWNFR---GELVTSFE 350 (474)
Q Consensus 277 ~F~~~~~~~ll~~~~D~tIkIWDv~tg~-~~~~l~~h~~~v~sv~Fs--pdg~llaS~sD~tIklWd~~---G~ll~tl~ 350 (474)
.++ .-+..+++++..+.|.+||.+.|- .+..+++|...+..+.|. -.+.++-+++|+|||.||.+ -+--++..
T Consensus 165 kwn-yk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt 243 (1081)
T KOG0309|consen 165 KWN-YKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT 243 (1081)
T ss_pred eec-ccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc
Confidence 776 346678899999999999999764 677889999999999997 35555555559999999974 22222221
Q ss_pred cCCCCcCCCCeeEEEECCCCC--EEEEEecCCCccccccCCCCeEEEEeCCCC-eEEEEecCCCCCCCCccccCCCCCCc
Q 011970 351 DHLLWHPDCNTNNIYITSDQD--LIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSSTGK 427 (474)
Q Consensus 351 gH~~~~~~~~v~svafSpDg~--~LaS~s~~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gH~~~~~~~~~~~~~~~~~ 427 (474)
-. -.++--.|.|=|+ +|.= .. +.+.-..--.+..-+.||+.++ +.++++.||++-+.
T Consensus 244 t~------~piw~~r~~Pfg~g~~~mp-~~-G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~------------ 303 (1081)
T KOG0309|consen 244 TN------FPIWRGRYLPFGEGYCIMP-MV-GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVL------------ 303 (1081)
T ss_pred cc------CcceeccccccCceeEecc-cc-CCeeeeeccccchhhhhccccCCcceeeecCcchHHH------------
Confidence 11 1134444555322 2210 00 0000000011455677998887 67999999996111
Q ss_pred cccccccccccccccccccCEEEEEEcCCCC--EEEEEcCCCcEEEccC
Q 011970 428 SKKLNKSSYIRSTVGEALEDITSLFYDEERN--EIYTGNRHGLVHVWSN 474 (474)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~V~slafSpDg~--~LaSgs~DgtVklWd~ 474 (474)
...|+-+. ...|+-|.+ .|+|=|.|.++|||-+
T Consensus 304 ----eFlWR~r~----------e~~~d~d~rdfQLVTWSkD~~lrlWpI 338 (1081)
T KOG0309|consen 304 ----EFLWRKRK----------ECDGDYDSRDFQLVTWSKDQTLRLWPI 338 (1081)
T ss_pred ----HHhhhhcc----------cccCCCCccceeEEEeecCCceEeeec
Confidence 11111111 122333333 5999999999999953
No 280
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.62 E-value=2e-05 Score=78.85 Aligned_cols=189 Identities=13% Similarity=0.109 Sum_probs=107.3
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC---------CcEEEEEEcCC--------ceEEEEecCCCCccE
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---------KHVQEIKISPG--------IMLLIFNRSSSHVPL 252 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~---------~~V~~vafSpg--------~~la~~s~~s~D~tI 252 (474)
-|+|| ||+.+||++..-|+|+|+|+ .|..++.++. ..|..+.|-+- ..|++. .++.+
T Consensus 48 kl~WS-pD~tlLa~a~S~G~i~vfdl-~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~----Y~G~L 121 (282)
T PF15492_consen 48 KLAWS-PDCTLLAYAESTGTIRVFDL-MGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN----YRGQL 121 (282)
T ss_pred EEEEC-CCCcEEEEEcCCCeEEEEec-ccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEe----cccee
Confidence 58998 89999999999999999998 4577777752 34666667631 223332 12233
Q ss_pred EEE--ec---CCCeEEEEEe---ecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCC-Cce-EEeccccCCceEEEEE
Q 011970 253 KIL--SI---EDGTVLKVFY---HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-AEL-MEVSRTEFMTPSAFIF 321 (474)
Q Consensus 253 kLW--di---~tG~~L~tl~---~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~t-g~~-~~~l~~h~~~v~sv~F 321 (474)
+=. ++ +..+...+|. ++.+.|..+.|.|. -..|+++| +...-..+.... |.. -+++.+
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~-h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~---------- 190 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK-HRLLLVGGCEQNQDGMSKASSCGLTAWRILSD---------- 190 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC-CCEEEEeccCCCCCccccccccCceEEEEcCC----------
Confidence 322 22 2345556666 34668899998753 35556665 333211111000 110 011111
Q ss_pred cCCCcEEEEEcCCc------EEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEE
Q 011970 322 LYENQLFLTFRNRT------VAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 394 (474)
Q Consensus 322 spdg~llaS~sD~t------IklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIk 394 (474)
+|..+.+.++.|+. -.+|.+ ....-.......+. |-.+.+||||++||+... +|.|-
T Consensus 191 ~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~-----i~kmSlSPdg~~La~ih~-----------sG~ls 254 (282)
T PF15492_consen 191 SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDG-----IFKMSLSPDGSLLACIHF-----------SGSLS 254 (282)
T ss_pred CCcEEEccccCccccccccccceeeccceeeeeccccCCCc-----eEEEEECCCCCEEEEEEc-----------CCeEE
Confidence 23333332222222 124443 12211111112233 688999999999999887 89999
Q ss_pred EEeCCCCeEEEEecCCC
Q 011970 395 VSSILTGKCLAKINATN 411 (474)
Q Consensus 395 lWdi~tG~cl~tl~gH~ 411 (474)
||++.+=+++++.+-+.
T Consensus 255 LW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 255 LWEIPSLRLQRSWKQDE 271 (282)
T ss_pred EEecCcchhhcccchhh
Confidence 99999888877775544
No 281
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.57 E-value=2.1e-05 Score=83.19 Aligned_cols=269 Identities=14% Similarity=0.123 Sum_probs=169.8
Q ss_pred cccccccccccEEEEEee-ccEEEEeeCCCeEEeeecc-ccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccc
Q 011970 80 FVLPFLMKRTKVIEIVAA-RDIVFALAHSGVCAAFSRE-TNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSS 157 (474)
Q Consensus 80 ~~~~~~~~~~~V~~i~~s-~~~las~s~dgtiklW~~~-tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~ 157 (474)
.|++++--..-|.+=++- +.+-+-..++|.=.|++.. .|+-|+--...++ -+.=..|.||+.|+.. ..
T Consensus 217 tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtd--YY~R~~nsDGkrIvFq-----~~--- 286 (668)
T COG4946 217 TFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTD--YYPRNANSDGKRIVFQ-----NA--- 286 (668)
T ss_pred ceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCchh--ccccccCCCCcEEEEe-----cC---
Confidence 344444444444433333 3344445566666666533 2443321111111 1222346788877652 11
Q ss_pred eeeeEEEEeEeccCCC---CCccceeee-cc---ccCceEEE-EeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcE
Q 011970 158 LKCRSTKIEYIRRGKP---DSGFALFES-ES---LKWPGFVE-FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHV 229 (474)
Q Consensus 158 Lk~~~~~iw~i~~G~~---~~~~~lf~~-~~---~~~~~~V~-Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V 229 (474)
..|.+.|..+-.+ +-+.+++.. +. .....+++ |+..||.++|.-|. |..-|.+...|--++.-+...|
T Consensus 287 ---GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~V 362 (668)
T COG4946 287 ---GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQVGKKGGV 362 (668)
T ss_pred ---CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEEcCCCCce
Confidence 3556666544332 233344422 10 11112345 88889999998874 4566666555555555556678
Q ss_pred EEEEEc-CCceEEEEecCCCCc-cEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEE
Q 011970 230 QEIKIS-PGIMLLIFNRSSSHV-PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME 307 (474)
Q Consensus 230 ~~vafS-pg~~la~~s~~s~D~-tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~ 307 (474)
.-..|. .+.-++++.. |+ .+-|+|.++|+. +.++...+.+.+|..+ |+|.+++++-....|-+.|+.||+...
T Consensus 363 rY~r~~~~~e~~vigt~---dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs-~dGK~~vvaNdr~el~vididngnv~~ 437 (668)
T COG4946 363 RYRRIQVDPEGDVIGTN---DGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVS-PDGKKVVVANDRFELWVIDIDNGNVRL 437 (668)
T ss_pred EEEEEccCCcceEEecc---CCceEEEEecCCceE-EEeeCCccceEEEEEc-CCCcEEEEEcCceEEEEEEecCCCeeE
Confidence 888888 3445566533 44 689999887764 5566677899999976 677778888888889999999999888
Q ss_pred eccccCCceEEEEEcCCCcEEEEEc-----CCcEEEEeCC-CcE--EEEeccCCCCcCCCCeeEEEECCCCCEEEE
Q 011970 308 VSRTEFMTPSAFIFLYENQLFLTFR-----NRTVAVWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIIS 375 (474)
Q Consensus 308 ~l~~h~~~v~sv~Fspdg~llaS~s-----D~tIklWd~~-G~l--l~tl~gH~~~~~~~~v~svafSpDg~~LaS 375 (474)
.-+.+..-+..++++|+++.+|-+- -+.|||+|+. |+. ++|-.+|. .+=||-|||++|-=
T Consensus 438 idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~D--------fsPaFD~d~ryLYf 505 (668)
T COG4946 438 IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYD--------FSPAFDPDGRYLYF 505 (668)
T ss_pred ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccc--------cCcccCCCCcEEEE
Confidence 8788888999999999999999763 5689999997 564 33444443 35679999998753
No 282
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.56 E-value=7.8e-07 Score=91.92 Aligned_cols=156 Identities=15% Similarity=0.247 Sum_probs=109.4
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCC----eEEEEEc--C--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCe
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSIS--D--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGT 261 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg----~~l~tl~--~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~ 261 (474)
.+.++ +.|++||.+-.+...-++++..- +++.... . ..+..+..+ .....+..+++...+.+|++..|.
T Consensus 67 ~~~~s-~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~--~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 67 LVLTS-DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRED--TSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccC-CCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeecc--ceEEEEeecCCceeeeeecccccC
Confidence 46665 67888887777776666665421 2332222 1 234444443 344455556777889999998766
Q ss_pred EEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe-ccccCCceEEEEEcCCCcEEEEEc-CCcEEEE
Q 011970 262 VLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 339 (474)
Q Consensus 262 ~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~-l~~h~~~v~sv~Fspdg~llaS~s-D~tIklW 339 (474)
++-.+ ||...+..|+++ ||++.|+++-.|+.||+-....---++. .-||...|+.++.- ++++|+|++ |+|+++|
T Consensus 144 ~~~~l-GhvSml~dVavS-~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~-~~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 144 CEPIL-GHVSMLLDVAVS-PDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT-DNYLLLSGSGDKTLRLW 220 (390)
T ss_pred cchhh-hhhhhhheeeec-CCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec-cCceeeecCCCCcEEEE
Confidence 65544 788899999998 6778888899999999876555444443 46899999988655 556688888 9999999
Q ss_pred eCC-CcEEEEecc
Q 011970 340 NFR-GELVTSFED 351 (474)
Q Consensus 340 d~~-G~ll~tl~g 351 (474)
|.. |+++.++.-
T Consensus 221 d~~sgk~L~t~dl 233 (390)
T KOG3914|consen 221 DITSGKLLDTCDL 233 (390)
T ss_pred ecccCCcccccch
Confidence 995 999987753
No 283
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.53 E-value=6.3e-06 Score=82.77 Aligned_cols=131 Identities=11% Similarity=0.064 Sum_probs=96.3
Q ss_pred EEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEE--EEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECC-CCce
Q 011970 230 QEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLK--VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NAEL 305 (474)
Q Consensus 230 ~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~--tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~-tg~~ 305 (474)
.++.|++ +..++++. +++.+.+=+...+.+.+ +.+.|.-..|...|+..+++.+.+|++|+.+.-||++ .+++
T Consensus 125 lslD~~~~~~~i~vs~---s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSD---SRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTF 201 (339)
T ss_pred eEEEeeccCceEEEEc---CCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcce
Confidence 3567776 33444432 23455555544444444 6778888999999988778778889999999999999 5667
Q ss_pred EEe-ccccCCceEEEEEc-CCCcEEEEEc-CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCC
Q 011970 306 MEV-SRTEFMTPSAFIFL-YENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSD 369 (474)
Q Consensus 306 ~~~-l~~h~~~v~sv~Fs-pdg~llaS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpD 369 (474)
+.. .+-|.+.|.++--| |....++||+ |.+|++||.+ |+.+..-.-- + .||-+.-+|-
T Consensus 202 i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~-G-----GVWRi~~~p~ 264 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVG-G-----GVWRIKHHPE 264 (339)
T ss_pred eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccc-c-----ceEEEEecch
Confidence 655 56699999998776 6789999999 9999999995 8877532221 1 2788988884
No 284
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.52 E-value=0.0004 Score=67.54 Aligned_cols=199 Identities=15% Similarity=0.137 Sum_probs=126.6
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEE--EEEc-----CCcEEEEE
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSIS-----DKHVQEIK 233 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l--~tl~-----~~~V~~va 233 (474)
..+.-++...++. ..+.. ..+..++|+.++|+++++.. ++ +.+.|+++++.. .... .....+++
T Consensus 22 ~~i~~~~~~~~~~----~~~~~---~~~~G~~~~~~~g~l~v~~~-~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~ 92 (246)
T PF08450_consen 22 GRIYRVDPDTGEV----EVIDL---PGPNGMAFDRPDGRLYVADS-GG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVA 92 (246)
T ss_dssp TEEEEEETTTTEE----EEEES---SSEEEEEEECTTSEEEEEET-TC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEE
T ss_pred CEEEEEECCCCeE----EEEec---CCCceEEEEccCCEEEEEEc-Cc-eEEEecCCCcEEEEeeccCCCcccCCCceEE
Confidence 3555566555443 12332 22667888756887777653 44 555699999743 3442 23578999
Q ss_pred EcCCceEEEEecCCCC------ccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCC--Cc
Q 011970 234 ISPGIMLLIFNRSSSH------VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN--AE 304 (474)
Q Consensus 234 fSpg~~la~~s~~s~D------~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~t--g~ 304 (474)
+.|++.+..+...... +.|..++.. |++...+.+ ...-..++|+ +++..|.+. +..+.|.-+|+.. ++
T Consensus 93 vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~~pNGi~~s-~dg~~lyv~ds~~~~i~~~~~~~~~~~ 169 (246)
T PF08450_consen 93 VDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LGFPNGIAFS-PDGKTLYVADSFNGRIWRFDLDADGGE 169 (246)
T ss_dssp E-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ESSEEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTCC
T ss_pred EcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-cccccceEEC-CcchheeecccccceeEEEeccccccc
Confidence 9986666555433211 345566665 666555443 4667899998 567777665 6888899999863 32
Q ss_pred eE--Ee---ccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEE-CCCCCEEEEE
Q 011970 305 LM--EV---SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLIISY 376 (474)
Q Consensus 305 ~~--~~---l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svaf-SpDg~~LaS~ 376 (474)
.. ++ +.+....+-.+++..+|++.++.. .+.|.+.|.+|+++..++-.... +.+++| -||.+.|.-.
T Consensus 170 ~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~-----~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 170 LSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPR-----PTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSS-----EEEEEEESTTSSEEEEE
T ss_pred eeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCC-----EEEEEEECCCCCEEEEE
Confidence 21 22 233333588999999999999877 89999999999999888754222 679999 5776666543
No 285
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.51 E-value=0.00026 Score=82.38 Aligned_cols=268 Identities=13% Similarity=0.122 Sum_probs=158.8
Q ss_pred EEEee--ccEEEEeeC------CCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEE
Q 011970 93 EIVAA--RDIVFALAH------SGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTK 164 (474)
Q Consensus 93 ~i~~s--~~~las~s~------dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~ 164 (474)
.|..- |+++|..+- -+.+|+|+++ |++..+-.. -++.-.+++|.|.|..||++-. ..++ +.|-
T Consensus 214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~-v~gLe~~l~WrPsG~lIA~~q~-~~~~------~~Vv 284 (928)
T PF04762_consen 214 RISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP-VDGLEGALSWRPSGNLIASSQR-LPDR------HDVV 284 (928)
T ss_pred EEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc-CCCccCCccCCCCCCEEEEEEE-cCCC------cEEE
Confidence 44444 888888875 3689999988 887666553 4455568999999998887664 3343 4555
Q ss_pred EeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe--EEEEEc---CCcEEEEEEcC--C
Q 011970 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS---DKHVQEIKISP--G 237 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~--~l~tl~---~~~V~~vafSp--g 237 (474)
++. ++|--...|.|-....-..+..++|+ +|+.+||---.|. |+||-..||. +-+.+. ...+..+.|+| -
T Consensus 285 FfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn-~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p 361 (928)
T PF04762_consen 285 FFE-RNGLRHGEFTLRFDPEEEKVIELAWN-SDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP 361 (928)
T ss_pred EEe-cCCcEeeeEecCCCCCCceeeEEEEC-CCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC
Confidence 554 66665444444321112235579998 7999999977665 9999999998 444554 23445577886 2
Q ss_pred ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEe---cCCCeEEEEeCCCcEEEEECCCCc-----eEEec
Q 011970 238 IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIE---QFNEKLLVKQENENLQILDVRNAE-----LMEVS 309 (474)
Q Consensus 238 ~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~---~~~~~ll~~~~D~tIkIWDv~tg~-----~~~~l 309 (474)
..|.+... +|+... + ...+.+++++ |++.-+++-=+..+++|=.++... +...+
T Consensus 362 ~~L~v~t~-------------~g~~~~-~----~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l 423 (928)
T PF04762_consen 362 LRLHVLTS-------------NGQYEI-Y----DFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL 423 (928)
T ss_pred CEEEEEec-------------CCcEEE-E----EEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE
Confidence 33333321 122110 0 1223444331 222223333355677877777654 12222
Q ss_pred cccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-Cc--------EEEEeccC-----CCCcCCCCeeEEEECCCCCEEE
Q 011970 310 RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--------LVTSFEDH-----LLWHPDCNTNNIYITSDQDLII 374 (474)
Q Consensus 310 ~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~--------ll~tl~gH-----~~~~~~~~v~svafSpDg~~La 374 (474)
.- ...|..++|++++..+|.-. |++|.+|... .+ +..++..+ ....+...+..++|..+..+++
T Consensus 424 ~~-~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (928)
T PF04762_consen 424 EL-PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLV 502 (928)
T ss_pred cC-CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEE
Confidence 22 24789999999998777776 9999999953 21 11122211 1111112357788888887777
Q ss_pred EEecCCCccccccCCCCeEEEEeCC
Q 011970 375 SYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 375 S~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
..+. ...-..|.++++.
T Consensus 503 ~~~~--------~~~~~~i~~~~~~ 519 (928)
T PF04762_consen 503 LSDS--------DSNQSKIVLVDID 519 (928)
T ss_pred EEec--------CcccceEEEEEec
Confidence 6553 1124678888874
No 286
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=1.8e-07 Score=99.67 Aligned_cols=173 Identities=12% Similarity=0.142 Sum_probs=123.1
Q ss_pred EEEcCCcEEEEE-EcCCceEEEEecCCCCccEEEEecCC-------CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCC
Q 011970 222 YSISDKHVQEIK-ISPGIMLLIFNRSSSHVPLKILSIED-------GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE 293 (474)
Q Consensus 222 ~tl~~~~V~~va-fSpg~~la~~s~~s~D~tIkLWdi~t-------G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~ 293 (474)
++.|.+.|+.|+ ++....++++ +.|+|||||+++. ..|.-|+..|...+.++.|.+ +.. -+.+-|+
T Consensus 731 f~GH~~~iRai~AidNENSFiSA---SkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr--~i~ScD~ 804 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISA---SKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLR--SIASCDG 804 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeec---cCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccc--eeeeccC
Confidence 445566777764 4445555544 6699999999863 247778888999999999985 222 3456799
Q ss_pred cEEEEECCCCceEE-eccc-cCCceEEEEE--cCCCcEEEEE-c-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEE
Q 011970 294 NLQILDVRNAELME-VSRT-EFMTPSAFIF--LYENQLFLTF-R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYI 366 (474)
Q Consensus 294 tIkIWDv~tg~~~~-~l~~-h~~~v~sv~F--spdg~llaS~-s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svaf 366 (474)
-|.+||.--|.++. .... ....+..+.- +-|..++..+ + ..|||+.|.+ ++.+..++--...-|+..++.++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999988888764 2211 1112222322 3356667666 5 8899999996 888887776555556667899999
Q ss_pred CCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 367 TSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 367 SpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
-|.|+.+|.+=. .|+|-+-|..+|+.+..++.-.
T Consensus 885 a~~GN~lAa~LS-----------nGci~~LDaR~G~vINswrpme 918 (1034)
T KOG4190|consen 885 ADKGNKLAAALS-----------NGCIAILDARNGKVINSWRPME 918 (1034)
T ss_pred ccCcchhhHHhc-----------CCcEEEEecCCCceeccCCccc
Confidence 999999997643 8999999999999887766544
No 287
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=1.6e-05 Score=85.24 Aligned_cols=280 Identities=12% Similarity=0.155 Sum_probs=169.8
Q ss_pred cEEEEEee--ccEEE-----EeeCCCe-----EEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccc
Q 011970 90 KVIEIVAA--RDIVF-----ALAHSGV-----CAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSS 157 (474)
Q Consensus 90 ~V~~i~~s--~~~la-----s~s~dgt-----iklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~ 157 (474)
.++++.|+ +.+|. +-..+++ +++|+.+|+....+++.-.... |+.-|++|..+-+=
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~ar----------- 142 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAAR----------- 142 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhh-----------
Confidence 56777777 55443 2334444 4599999988777777644443 79999998753221
Q ss_pred eeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCe--EE-----EEecCCCcEEEeecCCCeE-----EEEEc
Q 011970 158 LKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGK--VL-----TYSAQDSIYKVFDLKNYTM-----LYSIS 225 (474)
Q Consensus 158 Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk--~L-----aS~s~D~tiKlWdl~tg~~-----l~tl~ 225 (474)
|--..+.++++..=+-.. -+| +...+...++|| -++ .| .+.+.=..+|||-..-+.. .+++-
T Consensus 143 lv~nev~f~~~~~f~~~~-~kl----~~~~i~~f~lSp-gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF 216 (566)
T KOG2315|consen 143 LVSNEVQFYDLGSFKTIQ-HKL----SVSGITMLSLSP-GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF 216 (566)
T ss_pred hhcceEEEEecCCcccee-eee----eccceeeEEecC-CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc
Confidence 111455666643311100 001 122333556653 211 22 2456677899998652111 12332
Q ss_pred -CCcEEEEEEcC-C-ceEEEEecCC--------CCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEE--EeCC
Q 011970 226 -DKHVQEIKISP-G-IMLLIFNRSS--------SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLV--KQEN 292 (474)
Q Consensus 226 -~~~V~~vafSp-g-~~la~~s~~s--------~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~--~~~D 292 (474)
.+.| ...+.+ | ..|+..+.+- +..++.+.++++-.+.-.|.. .++|.+|.|++ ++..+++ |-.=
T Consensus 217 kadkv-qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k-~GPVhdv~W~~-s~~EF~VvyGfMP 293 (566)
T KOG2315|consen 217 KADKV-QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK-EGPVHDVTWSP-SGREFAVVYGFMP 293 (566)
T ss_pred cccee-EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC-CCCceEEEECC-CCCEEEEEEeccc
Confidence 2222 344454 2 2333332220 124799999985566666653 37899999984 4544554 3377
Q ss_pred CcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc----CCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEEC
Q 011970 293 ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR----NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYIT 367 (474)
Q Consensus 293 ~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s----D~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafS 367 (474)
-.+-|+|++-.-......| .=..+-|+|.|++++-++ -|.|.+||+ +-+++.+++.-.. .-..|+
T Consensus 294 Akvtifnlr~~~v~df~eg---pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t-------t~~eW~ 363 (566)
T KOG2315|consen 294 AKVTIFNLRGKPVFDFPEG---PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT-------TVFEWS 363 (566)
T ss_pred ceEEEEcCCCCEeEeCCCC---CccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc-------eEEEEc
Confidence 8899999764333333332 335677999999987654 689999999 5889998875432 348899
Q ss_pred CCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 368 SDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 368 pDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
|||+++.++..+ |.=+. |+.||||+. ||..+..
T Consensus 364 PdGe~flTATTa-PRlrv----dNg~Kiwhy-tG~~l~~ 396 (566)
T KOG2315|consen 364 PDGEYFLTATTA-PRLRV----DNGIKIWHY-TGSLLHE 396 (566)
T ss_pred CCCcEEEEEecc-ccEEe----cCCeEEEEe-cCceeeh
Confidence 999999998862 33333 899999997 8987753
No 288
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.45 E-value=0.0006 Score=70.24 Aligned_cols=257 Identities=13% Similarity=0.202 Sum_probs=160.8
Q ss_pred eEEEEeEe--ccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecC---CCcEEEeecC--CCeEEE----EEcCCcE
Q 011970 161 RSTKIEYI--RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQ---DSIYKVFDLK--NYTMLY----SISDKHV 229 (474)
Q Consensus 161 ~~~~iw~i--~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~---D~tiKlWdl~--tg~~l~----tl~~~~V 229 (474)
+.|..|++ .+|++..-..+. ...-|-.++|+ ||++.|-++-. ++.|--+.+. +|++-. .+.++.-
T Consensus 16 ~gI~v~~ld~~~g~l~~~~~v~---~~~nptyl~~~-~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 16 QGIYVFNLDTKTGELSLLQLVA---ELGNPTYLAVN-PDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP 91 (346)
T ss_pred CceEEEEEeCcccccchhhhcc---ccCCCceEEEC-CCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence 67788887 566653322222 24567789998 79988877654 4566666554 377533 2334444
Q ss_pred EEEEEcCCc-eEEEEecCCCCccEEEEecCC-CeEEE---EEeecCcc----------eeEEEEEecCCCeEEEEe-CCC
Q 011970 230 QEIKISPGI-MLLIFNRSSSHVPLKILSIED-GTVLK---VFYHLLHR----------NKKVDFIEQFNEKLLVKQ-ENE 293 (474)
Q Consensus 230 ~~vafSpg~-~la~~s~~s~D~tIkLWdi~t-G~~L~---tl~~h~~~----------v~~V~F~~~~~~~ll~~~-~D~ 293 (474)
.-|++++++ .++++.-. -+.|.+.-+++ |.+.. .+. |... +-.+.|. |++.+|++.. .-.
T Consensus 92 ~yvsvd~~g~~vf~AnY~--~g~v~v~p~~~dG~l~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~t-P~~~~l~v~DLG~D 167 (346)
T COG2706 92 CYVSVDEDGRFVFVANYH--SGSVSVYPLQADGSLQPVVQVVK-HTGSGPHERQESPHVHSANFT-PDGRYLVVPDLGTD 167 (346)
T ss_pred eEEEECCCCCEEEEEEcc--CceEEEEEcccCCccccceeeee-cCCCCCCccccCCccceeeeC-CCCCEEEEeecCCc
Confidence 779999754 55555322 36788888854 65432 232 2222 5566665 6777887764 233
Q ss_pred cEEEEECCCCceEEe---ccccCCceEEEEEcCCCcEEEEEc--CCcEEEEeCC---Cc--EEEEe-------ccCCCCc
Q 011970 294 NLQILDVRNAELMEV---SRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR---GE--LVTSF-------EDHLLWH 356 (474)
Q Consensus 294 tIkIWDv~tg~~~~~---l~~h~~~v~sv~Fspdg~llaS~s--D~tIklWd~~---G~--ll~tl-------~gH~~~~ 356 (474)
.|.++++..|.+... .......++=++|.|+++++-.-. ++||-+|..+ |+ +++++ .|- .|
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~-~~- 245 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT-NW- 245 (346)
T ss_pred eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC-Cc-
Confidence 688999998887542 123446788999999999988776 9999999985 33 33322 222 13
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC-CeEEEEecCCCCCCCCccccCCCCCCccccccccc
Q 011970 357 PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT-GKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSS 435 (474)
Q Consensus 357 ~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t-G~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (474)
.-.|.+||||++|-.+-. + ...|-++.+.. |..|..+.-... +..
T Consensus 246 ----~aaIhis~dGrFLYasNR---------g-~dsI~~f~V~~~~g~L~~~~~~~t---eg~----------------- 291 (346)
T COG2706 246 ----AAAIHISPDGRFLYASNR---------G-HDSIAVFSVDPDGGKLELVGITPT---EGQ----------------- 291 (346)
T ss_pred ----eeEEEECCCCCEEEEecC---------C-CCeEEEEEEcCCCCEEEEEEEecc---CCc-----------------
Confidence 468999999999996543 2 34677776632 233443322221 000
Q ss_pred cccccccccccCEEEEEEcCCCCEEEEEcCCC-cEEEc
Q 011970 436 YIRSTVGEALEDITSLFYDEERNEIYTGNRHG-LVHVW 472 (474)
Q Consensus 436 ~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dg-tVklW 472 (474)
.=....|+|+|+.|+.+++|. +|.+.
T Consensus 292 -----------~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 292 -----------FPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred -----------CCccceeCCCCCEEEEEccCCCcEEEE
Confidence 124578999999999998754 45544
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=1e-06 Score=94.03 Aligned_cols=214 Identities=18% Similarity=0.175 Sum_probs=141.8
Q ss_pred eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec-cCCCCCcc-ceeee-ccccCceEEEEeCC
Q 011970 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-RGKPDSGF-ALFES-ESLKWPGFVEFDDV 196 (474)
Q Consensus 120 ~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~-~G~~~~~~-~lf~~-~~~~~~~~V~Fs~~ 196 (474)
+||.+.| |.+.||.++-=.|.+..|++| .| +++++|.|+ .|.-..+- --|+. .|.+.+..+-|- .
T Consensus 727 rL~nf~G-H~~~iRai~AidNENSFiSAS----kD------KTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL-~ 794 (1034)
T KOG4190|consen 727 RLCNFTG-HQEKIRAIAAIDNENSFISAS----KD------KTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL-A 794 (1034)
T ss_pred eeecccC-cHHHhHHHHhcccccceeecc----CC------ceEEEEEeccccCccccceeeeEhhhccCcccceeee-e
Confidence 5788887 778999998877778889876 45 699999984 34332221 13443 255666678886 5
Q ss_pred CCeEEEEecCCCcEEEeecCCCeEEEEEcC----CcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCeEEEEEe---
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY--- 267 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~----~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~--- 267 (474)
+-+++||+ |+-|.|||.--|+++....+ ..+.-|+--| +.-++++. ++...|||+.|.+.++-...++
T Consensus 795 ~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAg-csaeSTVKl~DaRsce~~~E~kVcn 871 (1034)
T KOG4190|consen 795 DLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAG-CSAESTVKLFDARSCEWTCELKVCN 871 (1034)
T ss_pred ccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeee-ccchhhheeeecccccceeeEEecc
Confidence 77788865 89999999888887764431 2232333333 33334332 4557899999998887555444
Q ss_pred --ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEE-EeC-C
Q 011970 268 --HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV-WNF-R 342 (474)
Q Consensus 268 --~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIkl-Wd~-~ 342 (474)
+....++.++.- +.|.+++++=.+|+|-+.|.++|+.+...+.-.-..-.++ -|..|.|+++. |.++.+ |.. +
T Consensus 872 a~~Pna~~R~iaVa-~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 872 APGPNALTRAIAVA-DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred CCCCchheeEEEec-cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence 223455667653 6688888888999999999999998765432111111111 35666777776 999999 997 5
Q ss_pred CcEEEEec
Q 011970 343 GELVTSFE 350 (474)
Q Consensus 343 G~ll~tl~ 350 (474)
|....+.+
T Consensus 950 gimh~q~k 957 (1034)
T KOG4190|consen 950 GIMHLQDK 957 (1034)
T ss_pred CeeeeccC
Confidence 87665554
No 290
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.43 E-value=0.00012 Score=75.17 Aligned_cols=219 Identities=11% Similarity=0.145 Sum_probs=137.5
Q ss_pred CCcEEEeecCC--CeE--EEEEc-CCcEEEEEEcCCc-eEEEEecCCCCccEEEEecC--CCeEEE----EEeecCccee
Q 011970 207 DSIYKVFDLKN--YTM--LYSIS-DKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIE--DGTVLK----VFYHLLHRNK 274 (474)
Q Consensus 207 D~tiKlWdl~t--g~~--l~tl~-~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~--tG~~L~----tl~~h~~~v~ 274 (474)
++-|.+|++.+ |++ +..+. ..+.+=++|+|++ .|.+....+.++.|--+.+. +|++-. ++.++ .-.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~--~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS--PPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC--CCe
Confidence 45588888863 332 11111 3567778888755 55555444445666555444 365421 12222 224
Q ss_pred EEEEEecCCCeEEEEe-CCCcEEEEECCC-CceEEe--ccccCCc----------eEEEEEcCCCcEEEEEc--CCcEEE
Q 011970 275 KVDFIEQFNEKLLVKQ-ENENLQILDVRN-AELMEV--SRTEFMT----------PSAFIFLYENQLFLTFR--NRTVAV 338 (474)
Q Consensus 275 ~V~F~~~~~~~ll~~~-~D~tIkIWDv~t-g~~~~~--l~~h~~~----------v~sv~Fspdg~llaS~s--D~tIkl 338 (474)
-|++. ++++.++++. .-+.|.++-++. |.+... ...|... +-..-|.|+|++|++.. -..|-+
T Consensus 93 yvsvd-~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 93 YVSVD-EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL 171 (346)
T ss_pred EEEEC-CCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence 56665 4567777775 569999999865 654432 1223333 66788999999999986 335779
Q ss_pred EeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC-eEEEEecCCCCCCCC
Q 011970 339 WNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKV 416 (474)
Q Consensus 339 Wd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gH~~~~~~ 416 (474)
++++ |.+...=+.+. .+++.-+-|+|+|+|+++-.-+. -+++|-+|..... .-+..|+-+...|..
T Consensus 172 y~~~dg~L~~~~~~~v--~~G~GPRHi~FHpn~k~aY~v~E----------L~stV~v~~y~~~~g~~~~lQ~i~tlP~d 239 (346)
T COG2706 172 YDLDDGKLTPADPAEV--KPGAGPRHIVFHPNGKYAYLVNE----------LNSTVDVLEYNPAVGKFEELQTIDTLPED 239 (346)
T ss_pred EEcccCcccccccccc--CCCCCcceEEEcCCCcEEEEEec----------cCCEEEEEEEcCCCceEEEeeeeccCccc
Confidence 9995 87644222221 23333478999999998877765 4899999998763 455666666644432
Q ss_pred ccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcC
Q 011970 417 DDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 465 (474)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~ 465 (474)
..- -.+.-+|..+|||+.||..++
T Consensus 240 F~g-------------------------~~~~aaIhis~dGrFLYasNR 263 (346)
T COG2706 240 FTG-------------------------TNWAAAIHISPDGRFLYASNR 263 (346)
T ss_pred cCC-------------------------CCceeEEEECCCCCEEEEecC
Confidence 211 116778999999999998874
No 291
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.42 E-value=3.8e-05 Score=81.32 Aligned_cols=190 Identities=13% Similarity=0.104 Sum_probs=127.5
Q ss_pred CCCeEEEEecCCCcEEEeecCCCeEEE-EE--c------C-------CcEEEEEEcCCceEEEEecCCCCccEEEEecCC
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKNYTMLY-SI--S------D-------KHVQEIKISPGIMLLIFNRSSSHVPLKILSIED 259 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~tg~~l~-tl--~------~-------~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~t 259 (474)
.|||.++.. .-|.|-++|.+|-++.+ .+ + . ......+..+|.+++..+. +.+-|.+.-.
T Consensus 276 sDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR----GkaFi~~~~~ 350 (668)
T COG4946 276 SDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR----GKAFIMRPWD 350 (668)
T ss_pred CCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec----CcEEEECCCC
Confidence 378888764 45678899987754321 11 1 0 1122355557999888765 3455555545
Q ss_pred CeEEEEEeecCcceeEEEEEecCCCeEEEEeCCC-cEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEE
Q 011970 260 GTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE-NLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 337 (474)
Q Consensus 260 G~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~-tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIk 337 (474)
|-.++. +|..+|+=..+. -+++.++.+-.|| .+-|+|..+|+..+. .+....|.++..+|||+.++.+. ...|-
T Consensus 351 ~~~iqv--~~~~~VrY~r~~-~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 351 GYSIQV--GKKGGVRYRRIQ-VDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred CeeEEc--CCCCceEEEEEc-cCCcceEEeccCCceEEEEecCCceEEEe-eCCccceEEEEEcCCCcEEEEEcCceEEE
Confidence 555543 344667777775 4577888888777 999999999886554 45667899999999999999888 44777
Q ss_pred EEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 338 VWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 338 lWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
+-|++ |+.. ..+..... -+...+++|++++||=+ .. + +---+.|||.|+.+||....
T Consensus 427 vididngnv~-~idkS~~~----lItdf~~~~nsr~iAYa-fP--~----gy~tq~Iklydm~~~Kiy~v 484 (668)
T COG4946 427 VIDIDNGNVR-LIDKSEYG----LITDFDWHPNSRWIAYA-FP--E----GYYTQSIKLYDMDGGKIYDV 484 (668)
T ss_pred EEEecCCCee-Eecccccc----eeEEEEEcCCceeEEEe-cC--c----ceeeeeEEEEecCCCeEEEe
Confidence 77775 7642 22221111 26789999999999943 32 1 11257899999998887654
No 292
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.41 E-value=5.8e-05 Score=83.27 Aligned_cols=178 Identities=15% Similarity=0.119 Sum_probs=111.7
Q ss_pred EEEeCCCCeEEE-EecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc-eEEEEecCCCCccEEEEecCCCeEEEEEe
Q 011970 191 VEFDDVNGKVLT-YSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGI-MLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 191 V~Fs~~nGk~La-S~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~ 267 (474)
+=++ |||+.|- +.-..+.+-+.|.++.+...++. +.+-..++++|++ ++.+++. |.|.|..+..+.
T Consensus 198 ~Plp-nDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsy----------NsE~G~tl~em~ 266 (635)
T PRK02888 198 IPLP-NDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCY----------NSEEGVTLAEMM 266 (635)
T ss_pred cccC-CCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEecc----------CcccCcceeeec
Confidence 4453 6887663 34456788888888877766665 4555678999744 4444421 223344333332
Q ss_pred ecCcceeEEEEEe-------cCCCeEEEEeCCCcEEEEECCC----C-ceEEeccccCCceEEEEEcCCCcEEEEEc--C
Q 011970 268 HLLHRNKKVDFIE-------QFNEKLLVKQENENLQILDVRN----A-ELMEVSRTEFMTPSAFIFLYENQLFLTFR--N 333 (474)
Q Consensus 268 ~h~~~v~~V~F~~-------~~~~~ll~~~~D~tIkIWDv~t----g-~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D 333 (474)
-. ..-+.+.|.. ++|.+..+ .+++|.+.|.++ + +.+.... -...++.+.+||||+++..++ +
T Consensus 267 a~-e~d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS 342 (635)
T PRK02888 267 AA-ERDWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLS 342 (635)
T ss_pred cc-cCceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCC
Confidence 10 1113344432 23444443 368899999998 3 4444322 234688899999999998887 9
Q ss_pred CcEEEEeCC-Cc------------EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 334 RTVAVWNFR-GE------------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 334 ~tIklWd~~-G~------------ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
.+|.|-|++ -+ .+.+.+--..+ .-.+|.++|....|-.- |..|-.||+.+
T Consensus 343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP------LHTaFDg~G~aytslf~-----------dsqv~kwn~~~ 405 (635)
T PRK02888 343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP------LHTAFDGRGNAYTTLFL-----------DSQIVKWNIEA 405 (635)
T ss_pred CcEEEEEChhhhhhhhccCCccceEEEeeccCCCc------ceEEECCCCCEEEeEee-----------cceeEEEehHH
Confidence 999999985 33 24444432332 35889999987776554 78888999876
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.41 E-value=6.5e-05 Score=75.28 Aligned_cols=190 Identities=15% Similarity=0.152 Sum_probs=114.6
Q ss_pred CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecccc------CCceEEEEEcCCC-------cEEEEEcCCcE
Q 011970 270 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTE------FMTPSAFIFLYEN-------QLFLTFRNRTV 336 (474)
Q Consensus 270 ~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h------~~~v~sv~Fspdg-------~llaS~sD~tI 336 (474)
...-+.|+|+ ||+..|+.+...|+|+++|+-..++.....++ ...|..++|.+-. ++|+-.-+|.+
T Consensus 43 ~PQWRkl~WS-pD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 43 NPQWRKLAWS-PDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred CchheEEEEC-CCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 3456899997 66666666889999999999887776544333 2455666786543 55555557766
Q ss_pred EEEeCC-C-----cEEE--EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEec
Q 011970 337 AVWNFR-G-----ELVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 408 (474)
Q Consensus 337 klWd~~-G-----~ll~--tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 408 (474)
+=+-+. | +.-. +|..|... .|+++.+.|.-++|+-|+....++..+...+.-+--|-+.++..-.+.-
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~----Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v 197 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPH----GINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQV 197 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCC----ceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEc
Confidence 666642 2 2223 34344221 2789999999887776665333332222223345678777765433321
Q ss_pred CCCCCCCCccccCCCCCCcccccccccccc-----ccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 409 ATNCSPKVDDELGSSSTGKSKKLNKSSYIR-----STVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 409 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.-.. + ...........+++- +...+..+.|..+..||||+.||+-..+|.|-||++
T Consensus 198 ~~~~--~--------~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 198 TSSE--D--------DITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred cccC--c--------cccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence 1110 0 001111112222222 222345669999999999999999999999999974
No 294
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.39 E-value=0.00027 Score=73.87 Aligned_cols=226 Identities=12% Similarity=0.091 Sum_probs=136.4
Q ss_pred EEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEE-EEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCC
Q 011970 94 IVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRS-LFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGK 172 (474)
Q Consensus 94 i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~s-v~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~ 172 (474)
++..++.|+.++.+|.+..+|.+||+.+=..+. ... +.+ .... +| .|+.+. .+ ..+.-.|..+|+
T Consensus 116 ~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-~~~-~~ssP~v~-~~-~v~v~~----~~------g~l~ald~~tG~ 181 (394)
T PRK11138 116 VTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV-AGE-ALSRPVVS-DG-LVLVHT----SN------GMLQALNESDGA 181 (394)
T ss_pred cEEECCEEEEEcCCCEEEEEECCCCCCcccccC-CCc-eecCCEEE-CC-EEEEEC----CC------CEEEEEEccCCC
Confidence 455688889999999999999999998876653 222 222 1221 33 344322 22 355566778888
Q ss_pred CCCccceeeeccccC------ceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC------C---cEEEEEEcC-
Q 011970 173 PDSGFALFESESLKW------PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------K---HVQEIKISP- 236 (474)
Q Consensus 173 ~~~~~~lf~~~~~~~------~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~------~---~V~~vafSp- 236 (474)
. +|....... ..+-... +|.++ .++.|+.+...|+++|+.+....- . ....+.-+|
T Consensus 182 ~-----~W~~~~~~~~~~~~~~~sP~v~--~~~v~-~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~ 253 (394)
T PRK11138 182 V-----KWTVNLDVPSLTLRGESAPATA--FGGAI-VGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV 253 (394)
T ss_pred E-----eeeecCCCCcccccCCCCCEEE--CCEEE-EEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcE
Confidence 5 444321000 0011122 34444 456688888889999987765431 0 112222334
Q ss_pred --CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc--cc
Q 011970 237 --GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR--TE 312 (474)
Q Consensus 237 --g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~--~h 312 (474)
++.+.+.+ .++.+.-.|+++|+.+-+... .....+. ..++++.+...|+.+..+|..+|+.+-... .+
T Consensus 254 v~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~--~~~~~~~---~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~ 325 (394)
T PRK11138 254 VVGGVVYALA---YNGNLVALDLRSGQIVWKREY--GSVNDFA---VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH 325 (394)
T ss_pred EECCEEEEEE---cCCeEEEEECCCCCEEEeecC--CCccCcE---EECCEEEEEcCCCeEEEEECCCCcEEEcccccCC
Confidence 55655543 357899999999998866542 1111222 236888889999999999999998753221 11
Q ss_pred CCceEEEEEcCCCcEEEEEcCCcEEEEeC-CCcEEEEecc
Q 011970 313 FMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFED 351 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS~sD~tIklWd~-~G~ll~tl~g 351 (474)
.. ..+.+ -.+|.+++...||.|.+.|. +|+.+...+-
T Consensus 326 ~~-~~sp~-v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 326 RL-LTAPV-LYNGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred Cc-ccCCE-EECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 11 11111 13677766555999999999 5999877653
No 295
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=4.5e-05 Score=81.97 Aligned_cols=179 Identities=13% Similarity=0.197 Sum_probs=122.9
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcC-CceEEEEecCCC--------CccEEEEecCCC
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISP-GIMLLIFNRSSS--------HVPLKILSIEDG 260 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSp-g~~la~~s~~s~--------D~tIkLWdi~tG 260 (474)
.|.|| |-|.+|+|=-.-| |-+|-=++...++.+..-.|+-|.||| ..+|++++..-. -..+.||||.||
T Consensus 215 yv~wS-P~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 215 YVRWS-PKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eEEec-CCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 48998 7999999987766 779987777777777777899999999 677777765411 146999999999
Q ss_pred eEEEEEee--cCcceeEE-EEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc---C-
Q 011970 261 TVLKVFYH--LLHRNKKV-DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR---N- 333 (474)
Q Consensus 261 ~~L~tl~~--h~~~v~~V-~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s---D- 333 (474)
.+.++|.. ....+|.+ .++ .+++.+|-=.-.+|.|++..+-.++..-.-.-..|..+.|||.+++||-=. +
T Consensus 293 ~lkrsF~~~~~~~~~WP~frWS--~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~ 370 (698)
T KOG2314|consen 293 LLKRSFPVIKSPYLKWPIFRWS--HDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN 370 (698)
T ss_pred chhcceeccCCCccccceEEec--cCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence 99999974 22222332 233 356666643347899998776555432111234677889999999998533 2
Q ss_pred --CcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEe
Q 011970 334 --RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 377 (474)
Q Consensus 334 --~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s 377 (474)
-++.|-.+ +++.+++-.=|. |.|| .+.+-.+|++|+-.-
T Consensus 371 ~parvtL~evPs~~~iRt~nlfn--VsDc---kLhWQk~gdyLcvkv 412 (698)
T KOG2314|consen 371 IPARVTLMEVPSKREIRTKNLFN--VSDC---KLHWQKSGDYLCVKV 412 (698)
T ss_pred CcceEEEEecCccceeeecccee--eecc---EEEeccCCcEEEEEE
Confidence 25666666 466666554443 3344 377888999998653
No 296
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.33 E-value=0.00058 Score=79.53 Aligned_cols=338 Identities=11% Similarity=0.092 Sum_probs=177.2
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEee----eccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceee
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAF----SRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKC 160 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW----~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~ 160 (474)
...+|.++.+- .+.|..+..+|-|-+. +..+. ....-|.-+..|.+.+||||+++||.+. |...+-.|
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~--~~E~VG~vd~GI~a~~WSPD~Ella~vT--~~~~l~~m-- 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED--EIEIVGSVDSGILAASWSPDEELLALVT--GEGNLLLM-- 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc--eeEEEEEEcCcEEEEEECCCcCEEEEEe--CCCEEEEE--
Confidence 44677777776 6667777778888777 44433 2333445567799999999999998865 32221111
Q ss_pred eEEEEeEeccCCCCCccceeeec---cccCc-eEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEc-
Q 011970 161 RSTKIEYIRRGKPDSGFALFESE---SLKWP-GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS- 235 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~---~~~~~-~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafS- 235 (474)
+ +=|++..-.... -..|+.. +++|= ..=-|.=.-||..|-...|-++. .+..|.. + .++.--.|.|-
T Consensus 148 -t-~~fd~i~E~~l~-~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~--~~d~~~~--s-~dd~~~~ISWRG 219 (928)
T PF04762_consen 148 -T-RDFDPISEVPLD-SDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP--KVDEGKL--S-WDDGRVRISWRG 219 (928)
T ss_pred -e-ccceEEEEeecC-ccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC--ccccCcc--c-cCCCceEEEECC
Confidence 1 112221111000 0011110 11110 00123211233222111122221 1111111 1 12223345555
Q ss_pred CCceEEEEecC--CC-CccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe---CCCcEEEEECCCCceEEe-
Q 011970 236 PGIMLLIFNRS--SS-HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNAELMEV- 308 (474)
Q Consensus 236 pg~~la~~s~~--s~-D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~---~D~tIkIWDv~tg~~~~~- 308 (474)
+|..+|+++-. .+ -..||+|+-+ |++..+-+.-.+---.++|- |.|..|++.+ ....|-.|. ++|..-..
T Consensus 220 DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF 296 (928)
T PF04762_consen 220 DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFFE-RNGLRHGEF 296 (928)
T ss_pred CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeE
Confidence 47777777652 22 3689999964 88777766211222456665 5566666665 356777787 56653321
Q ss_pred ---ccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC---CcEEEEeccCCCCcCCCCeeEEEECCC-CCEEEEEecCCC
Q 011970 309 ---SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR---GELVTSFEDHLLWHPDCNTNNIYITSD-QDLIISYCKAEP 381 (474)
Q Consensus 309 ---l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~---G~ll~tl~gH~~~~~~~~v~svafSpD-g~~LaS~s~~~~ 381 (474)
+......|..+.|++|+.+||---...|+||... .-+.+.+.-.... .+..+.|+|. ...|...+.
T Consensus 297 ~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~----~~~~~~Wdpe~p~~L~v~t~--- 369 (928)
T PF04762_consen 297 TLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSE----SVNFVKWDPEKPLRLHVLTS--- 369 (928)
T ss_pred ecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCC----CCCceEECCCCCCEEEEEec---
Confidence 2245568899999999999998665559999873 3466666533221 1234777773 333444432
Q ss_pred ccccccCCCCeEEEEe----CCCCe--------EEEEecCCCCCCCCccccCCCCCCcccccccccccccccc------c
Q 011970 382 EDQWMEGSAGSINVSS----ILTGK--------CLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVG------E 443 (474)
Q Consensus 382 ~~~~~~s~DgtIklWd----i~tG~--------cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 443 (474)
.|.+...+ +..+. .++.+.|..- ..+......-..| +
T Consensus 370 --------~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~l-----------------llTpf~~a~VPPPMs~~~l~ 424 (928)
T PF04762_consen 370 --------NGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKL-----------------LLTPFRRAVVPPPMSSYELE 424 (928)
T ss_pred --------CCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeE-----------------EEecccccCCCchHhceEEc
Confidence 34444333 22221 2333333221 1111111111111 1
Q ss_pred cccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 444 ALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 444 ~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
....|.+|+|++++..+|.-..||+|.+|.
T Consensus 425 ~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 425 LPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred CCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 223899999999999999999999999885
No 297
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.27 E-value=0.0012 Score=69.32 Aligned_cols=312 Identities=13% Similarity=0.131 Sum_probs=145.7
Q ss_pred eccccceeeEeecCCCceEEEE-----EEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeecc-ccC
Q 011970 114 SRETNRRICFLNVSPDEVIRSL-----FYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESES-LKW 187 (474)
Q Consensus 114 ~~~tg~~l~~l~g~~~~~i~sv-----~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~-~~~ 187 (474)
|..||-++-.|...+ ..-.++ .|.+||+.|+.+|... .. +...+-|+.+|+..+ ++.+. -..
T Consensus 16 D~~TG~~VtrLT~~~-~~~h~~YF~~~~ft~dG~kllF~s~~d-g~------~nly~lDL~t~~i~Q----LTdg~g~~~ 83 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPD-GHSHRLYFYQNCFTDDGRKLLFASDFD-GN------RNLYLLDLATGEITQ----LTDGPGDNT 83 (386)
T ss_dssp -TTT--EEEE-S-TT-S-EE---TTS--B-TTS-EEEEEE-TT-SS-------EEEEEETTT-EEEE-------SS-B-T
T ss_pred CCCCCceEEEecCCC-CcccceeecCCCcCCCCCEEEEEeccC-CC------cceEEEEcccCEEEE----CccCCCCCc
Confidence 466787777776533 211212 3578999998887643 23 566667778887632 23211 111
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecCCCe--EEEEEcCCcEEEEEEc--CCceEEEEecC-C---------------
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDKHVQEIKIS--PGIMLLIFNRS-S--------------- 247 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~--~l~tl~~~~V~~vafS--pg~~la~~s~~-s--------------- 247 (474)
. ....+ |+.+.|.+-....+++--||+|.+ ++|.++..++-...++ .+..++.+... .
T Consensus 84 ~-g~~~s-~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~ 161 (386)
T PF14583_consen 84 F-GGFLS-PDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREF 161 (386)
T ss_dssp T-T-EE--TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHH
T ss_pred c-ceEEe-cCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHH
Confidence 1 12233 677888887777788888999987 6889988888766665 35544433211 1
Q ss_pred ----CCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe---CCC-cEEEEECCC-CceEEeccccCCceEE
Q 011970 248 ----SHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENE-NLQILDVRN-AELMEVSRTEFMTPSA 318 (474)
Q Consensus 248 ----~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~---~D~-tIkIWDv~t-g~~~~~l~~h~~~v~s 318 (474)
-...|.--|+.||+.-..+.. ..+..=+.|+|.++..|.-+- +|. .-|||=+.+ |.-.+.+..|....++
T Consensus 162 ~~a~p~~~i~~idl~tG~~~~v~~~-~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~ 240 (386)
T PF14583_consen 162 YEARPHCRIFTIDLKTGERKVVFED-TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESV 240 (386)
T ss_dssp HHC---EEEEEEETTT--EEEEEEE-SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEE
T ss_pred HhhCCCceEEEEECCCCceeEEEec-CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccc
Confidence 122456679999998777763 356677899977666666663 455 347775543 3222222222221111
Q ss_pred --EEEcCCCcEEEEE-----c-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCC-Ccccc---
Q 011970 319 --FIFLYENQLFLTF-----R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAE-PEDQW--- 385 (474)
Q Consensus 319 --v~Fspdg~llaS~-----s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~-~~~~~--- 385 (474)
=-|+|||..+.-- . +..|.=.|.. |+--...+ ..| ..-.-.++||+++|-= .++ |-+..
T Consensus 241 gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~-----~~H~~ss~Dg~L~vGD-G~d~p~~v~~~~ 312 (386)
T PF14583_consen 241 GHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPW-----CSHFMSSPDGKLFVGD-GGDAPVDVADAG 312 (386)
T ss_dssp EEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-S-----EEEEEE-TTSSEEEEE-E-----------
T ss_pred ccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCc-----eeeeEEcCCCCEEEec-CCCCCccccccc
Confidence 1278888876541 2 4456666663 54322221 122 2356678999998843 322 21110
Q ss_pred --ccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE-EEE
Q 011970 386 --MEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE-IYT 462 (474)
Q Consensus 386 --~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~-LaS 462 (474)
....|--|.|+++++++.. .|.-|.. +|.......+.++ .-+.|||||+. |++
T Consensus 313 ~~~~~~~p~i~~~~~~~~~~~-~l~~h~~---------------------sw~v~~~~~q~~h--Php~FSPDgk~VlF~ 368 (386)
T PF14583_consen 313 GYKIENDPWIYLFDVEAGRFR-KLARHDT---------------------SWKVLDGDRQVTH--PHPSFSPDGKWVLFR 368 (386)
T ss_dssp --------EEEEEETTTTEEE-EEEE----------------------------BTTBSSTT------EE-TTSSEEEEE
T ss_pred cceecCCcEEEEeccccCcee-eeeeccC---------------------cceeecCCCccCC--CCCccCCCCCEEEEE
Confidence 1123457888999877653 4444542 1222222222233 24899999998 556
Q ss_pred EcCCCcEEEc
Q 011970 463 GNRHGLVHVW 472 (474)
Q Consensus 463 gs~DgtVklW 472 (474)
.+..|...|+
T Consensus 369 Sd~~G~~~vY 378 (386)
T PF14583_consen 369 SDMEGPPAVY 378 (386)
T ss_dssp E-TTSS-EEE
T ss_pred CCCCCCccEE
Confidence 6677765553
No 298
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.27 E-value=2.2e-05 Score=80.33 Aligned_cols=246 Identities=14% Similarity=0.166 Sum_probs=147.7
Q ss_pred eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEe-ccCCCCCccceeeeccccCceEEEEeCCCC
Q 011970 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI-RRGKPDSGFALFESESLKWPGFVEFDDVNG 198 (474)
Q Consensus 120 ~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i-~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG 198 (474)
++..+.| |.+.|+....-|..+.++++| +| +++|||-= ..||.-..+.++. -..+...+|. ++-
T Consensus 16 ll~~~eG-~~d~vn~~~l~~~e~gv~~~s----~d------rtvrv~lkrds~q~wpsI~~~m---P~~~~~~~y~-~e~ 80 (404)
T KOG1409|consen 16 LLSKIEG-SQDDVNAAILIPKEEGVISVS----ED------RTVRVWLKRDSGQYWPSIYHYM---PSPCSAMEYV-SES 80 (404)
T ss_pred hhhhhcC-chhhhhhheeccCCCCeEEcc----cc------ceeeeEEeccccccCchhhhhC---CCCceEeeee-ccc
Confidence 4667787 678899988888888999976 78 89999963 3455422222222 2233456665 455
Q ss_pred eEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcC--CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEE
Q 011970 199 KVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISP--GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 276 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSp--g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V 276 (474)
..|.-|=..+++.=+ +.|. +.+ ..++....|+.++..+
T Consensus 81 ~~L~vg~~ngtvtef-------------------s~sedfnkm---------------------~~~r~~~~h~~~v~~~ 120 (404)
T KOG1409|consen 81 RRLYVGQDNGTVTEF-------------------ALSEDFNKM---------------------TFLKDYLAHQARVSAI 120 (404)
T ss_pred eEEEEEEecceEEEE-------------------Ehhhhhhhc---------------------chhhhhhhhhcceeeE
Confidence 555555444433222 2221 111 1122223456667777
Q ss_pred EEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC---CCcEEEEeccC
Q 011970 277 DFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF---RGELVTSFEDH 352 (474)
Q Consensus 277 ~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~---~G~ll~tl~gH 352 (474)
-|+.+ .+.+++.+.|+.+.=-=.++|.-+ .++.+.-.+.+.-.|=...--|- -+.|.+-.+ .-.++.++.+|
T Consensus 121 if~~~-~e~V~s~~~dk~~~~hc~e~~~~l---g~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h 196 (404)
T KOG1409|consen 121 VFSLT-HEWVLSTGKDKQFAWHCTESGNRL---GGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGH 196 (404)
T ss_pred EecCC-ceeEEEeccccceEEEeeccCCcc---cceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCc
Confidence 77643 466666666666653333333322 11111000000000000000111 223333222 24578899999
Q ss_pred CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE-EEEecCCCCCCCCccccCCCCCCccccc
Q 011970 353 LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC-LAKINATNCSPKVDDELGSSSTGKSKKL 431 (474)
Q Consensus 353 ~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c-l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 431 (474)
.+. +..+.+.|-+++|.||.. |..|-+|||--++- ...+.+|.+
T Consensus 197 ~~~-----~~~l~Wd~~~~~LfSg~~-----------d~~vi~wdigg~~g~~~el~gh~~------------------- 241 (404)
T KOG1409|consen 197 TGE-----VTCLKWDPGQRLLFSGAS-----------DHSVIMWDIGGRKGTAYELQGHND------------------- 241 (404)
T ss_pred ccc-----eEEEEEcCCCcEEEeccc-----------cCceEEEeccCCcceeeeeccchh-------------------
Confidence 986 689999999999999876 99999999954433 357788886
Q ss_pred cccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 432 NKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 432 ~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|.++.+-+--+.|.|++.||.|.+|++
T Consensus 242 ---------------kV~~l~~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 242 ---------------KVQALSYAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred ---------------hhhhhhhhhhheeeeeccCCCeEEEEec
Confidence 7888888888999999999999999985
No 299
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.5e-05 Score=83.91 Aligned_cols=265 Identities=15% Similarity=0.147 Sum_probs=171.9
Q ss_pred cccccccccEEEEEee-ccEEEEeeCCCeEEeeeccc--cce-eeEeecCCCceEEEEEEeeCCCEEEEEEeecCC-Ccc
Q 011970 82 LPFLMKRTKVIEIVAA-RDIVFALAHSGVCAAFSRET--NRR-ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASD-NFS 156 (474)
Q Consensus 82 ~~~~~~~~~V~~i~~s-~~~las~s~dgtiklW~~~t--g~~-l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~-d~s 156 (474)
++-.|||.-|.-+..+ -+++.++|.||.+|.|.-.- |-. +..+. .|...|-+++.|-||.+.+|++ + |
T Consensus 3 eksymhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFr-aHL~~I~sl~~S~dg~L~~Sv~----d~D-- 75 (558)
T KOG0882|consen 3 EKSYMHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFR-AHLGVILSLAVSYDGWLFRSVE----DPD-- 75 (558)
T ss_pred chhhcccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhH-HHHHHHHhhhccccceeEeecc----Ccc--
Confidence 3445799999988888 89999999999999998431 222 22222 4778899999999999999865 4 6
Q ss_pred ceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCC----eEEEEecCCCcEEEeecCCCeE--EE--EEcCCc
Q 011970 157 SLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNG----KVLTYSAQDSIYKVFDLKNYTM--LY--SISDKH 228 (474)
Q Consensus 157 ~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nG----k~LaS~s~D~tiKlWdl~tg~~--l~--tl~~~~ 228 (474)
+.+|+.|+.+=.....++|- --|+++++...-| .+-++...++.|-|.|-....| .+ .++-..
T Consensus 76 ----hs~KvfDvEn~DminmiKL~-----~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sP 146 (558)
T KOG0882|consen 76 ----HSVKVFDVENFDMINMIKLV-----DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSP 146 (558)
T ss_pred ----cceeEEEeeccchhhhcccc-----cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCc
Confidence 78888888665553322211 1233444432234 4444555788888998554332 22 344567
Q ss_pred EEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEE
Q 011970 229 VQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME 307 (474)
Q Consensus 229 V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~ 307 (474)
|-.+..+| +...++. ...+.|+-|+.+. .++-.+ ..+. |.+.+-.-+-
T Consensus 147 V~~i~y~qa~Ds~vSi---D~~gmVEyWs~e~--~~qfPr------~~l~--------------------~~~K~eTdLy 195 (558)
T KOG0882|consen 147 VKKIRYNQAGDSAVSI---DISGMVEYWSAEG--PFQFPR------TNLN--------------------FELKHETDLY 195 (558)
T ss_pred eEEEEeeccccceeec---cccceeEeecCCC--cccCcc------cccc--------------------ccccccchhh
Confidence 88888887 4433332 1236799998642 221111 1112 2222222222
Q ss_pred eccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEec--------------------------------cCC
Q 011970 308 VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE--------------------------------DHL 353 (474)
Q Consensus 308 ~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~--------------------------------gH~ 353 (474)
.+..-...+.++.|+|+|..+++.+ |++|++.++. |++++.++ .|.
T Consensus 196 ~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~ 275 (558)
T KOG0882|consen 196 GFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHG 275 (558)
T ss_pred cccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhc
Confidence 2222334678899999999999999 9999999994 87765333 343
Q ss_pred CCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 354 LWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 354 ~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
..+ -.++.|-..|++|+=++. =-||+-|+.|++|++.|--
T Consensus 276 ~~~----~~~~~fdes~~flly~t~------------~gikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 276 STV----GTNAVFDESGNFLLYGTI------------LGIKVINLDTNTVVRILGK 315 (558)
T ss_pred Ccc----cceeEEcCCCCEEEeecc------------eeEEEEEeecCeEEEEecc
Confidence 332 246779999999996653 3499999999999998843
No 300
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.21 E-value=2.3e-05 Score=79.39 Aligned_cols=265 Identities=15% Similarity=0.200 Sum_probs=156.5
Q ss_pred cccEEEEEee--ccEEEEeeCCCeEEeeeccccc-----eeeEeecCC-----------CceEEEEEEeeCCC---EEEE
Q 011970 88 RTKVIEIVAA--RDIVFALAHSGVCAAFSRETNR-----RICFLNVSP-----------DEVIRSLFYNKNND---SLIT 146 (474)
Q Consensus 88 ~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~-----~l~~l~g~~-----------~~~i~sv~fspdg~---~Lis 146 (474)
...|.+|.|. |.+||+|...|.|-+|.++.-+ .+..++++. .+.|..+-+-.+++ .|.+
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 3468888888 9999999999999999877433 122245421 23466777655543 4554
Q ss_pred EEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCC--------C
Q 011970 147 VSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN--------Y 218 (474)
Q Consensus 147 ~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t--------g 218 (474)
..| ++++||-|....+ ++-....+. .++.| |-.| -|+|-. .+++=.+.. .
T Consensus 106 -----tNd------ktiKlWKiyeknl----k~va~nnls--~~~~~-~~~g-~~~s~~---~l~lprls~hd~iiaa~p 163 (460)
T COG5170 106 -----TND------KTIKLWKIYEKNL----KVVAENNLS--DSFHS-PMGG-PLTSTK---ELLLPRLSEHDEIIAAKP 163 (460)
T ss_pred -----cCC------ceeeeeeeecccc----hhhhccccc--ccccc-ccCC-CcCCHH---HhhcccccccceEEEecc
Confidence 356 7999998865543 111111111 12333 2222 222211 121111110 0
Q ss_pred eEEE-EEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecC--CCeE-EEEEee-----cCcceeEEEEEecCCCeEEE
Q 011970 219 TMLY-SISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIE--DGTV-LKVFYH-----LLHRNKKVDFIEQFNEKLLV 288 (474)
Q Consensus 219 ~~l~-tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~--tG~~-L~tl~~-----h~~~v~~V~F~~~~~~~ll~ 288 (474)
.-+| ..|.-.|.+|.|.. ...++++ +|-.|-||+++ +|.- +--.+- ...-+.+..|+|+-...+.-
T Consensus 164 ~rvyaNaH~yhiNSiS~NsD~et~lSa----DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmY 239 (460)
T COG5170 164 CRVYANAHPYHINSISFNSDKETLLSA----DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMY 239 (460)
T ss_pred ceeccccceeEeeeeeecCchheeeec----cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEE
Confidence 1112 22345689999995 5566543 47789999875 2211 111111 12334677787654555556
Q ss_pred EeCCCcEEEEECCCCc-eEE-------e--------ccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC--CcEEEEec
Q 011970 289 KQENENLQILDVRNAE-LME-------V--------SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR--GELVTSFE 350 (474)
Q Consensus 289 ~~~D~tIkIWDv~tg~-~~~-------~--------l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~--G~ll~tl~ 350 (474)
++..|+|+|-|++... |.. + +.+-...++.+-|+|.|+++++-+=-||||||++ .+++.|..
T Consensus 240 SsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~ 319 (460)
T COG5170 240 SSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIP 319 (460)
T ss_pred ecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeec
Confidence 7899999999999543 211 1 1222346778899999999998777799999995 77888885
Q ss_pred cCCC--------CcCCCC--eeEEEECCCCCEEEEEec
Q 011970 351 DHLL--------WHPDCN--TNNIYITSDQDLIISYCK 378 (474)
Q Consensus 351 gH~~--------~~~~~~--v~svafSpDg~~LaS~s~ 378 (474)
=|.. ...||. --.+.||-|.+.+.|||.
T Consensus 320 ~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy 357 (460)
T COG5170 320 MHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSY 357 (460)
T ss_pred hHHHHHHHHHhhhhccceeeeEEEEecCCccccccccc
Confidence 5532 111111 135789999999999886
No 301
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.13 E-value=0.0013 Score=67.92 Aligned_cols=253 Identities=13% Similarity=0.128 Sum_probs=145.9
Q ss_pred CCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC-----------
Q 011970 106 HSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD----------- 174 (474)
Q Consensus 106 ~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~----------- 174 (474)
..+..-++|+++++....... ...+....|||||+.||-+. + +.+.+.+...|+..
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~----~-------~nly~~~~~~~~~~~lT~dg~~~i~ 87 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR----D-------NNLYLRDLATGQETQLTTDGEPGIY 87 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE----T-------TEEEEESSTTSEEEESES--TTTEE
T ss_pred cceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe----c-------CceEEEECCCCCeEEeccccceeEE
Confidence 356788999998765443332 45688999999999998864 2 34555554444320
Q ss_pred Cccc--eeeeccccCceEEEEeCCCCeEEEEecCCC------------------------------------cEEEeecC
Q 011970 175 SGFA--LFESESLKWPGFVEFDDVNGKVLTYSAQDS------------------------------------IYKVFDLK 216 (474)
Q Consensus 175 ~~~~--lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~------------------------------------tiKlWdl~ 216 (474)
.+.+ +.+.|-+.....+-|| |||+.||....|. .+.|+|++
T Consensus 88 nG~~dwvyeEEv~~~~~~~~WS-pd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~ 166 (353)
T PF00930_consen 88 NGVPDWVYEEEVFDRRSAVWWS-PDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLA 166 (353)
T ss_dssp ESB--HHHHHHTSSSSBSEEE--TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESS
T ss_pred cCccceeccccccccccceEEC-CCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECC
Confidence 1111 1111114444568898 7999999876321 34456777
Q ss_pred CCeEE-EEEc------CCcEEEEEEcCCce-EEEE--ecCCCCccEEEEecCCCeEEEEEee-cCcce---eEEEEEecC
Q 011970 217 NYTML-YSIS------DKHVQEIKISPGIM-LLIF--NRSSSHVPLKILSIEDGTVLKVFYH-LLHRN---KKVDFIEQF 282 (474)
Q Consensus 217 tg~~l-~tl~------~~~V~~vafSpg~~-la~~--s~~s~D~tIkLWdi~tG~~L~tl~~-h~~~v---~~V~F~~~~ 282 (474)
+++.. ..+. +..+..+.++|++. ++.. ++......+.+.|.++|++-..++. ...++ ....|..++
T Consensus 167 ~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~ 246 (353)
T PF00930_consen 167 SGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPD 246 (353)
T ss_dssp STCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTT
T ss_pred CCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCC
Confidence 77632 1211 24588899997544 4333 3333334577889998877544442 22333 356665234
Q ss_pred CCeE-EEEeCCCcEEEE--ECCCCceEEeccccCCceEE-EEEcCCCcEEE-EEc-C--CcEEEEeC--C-CcEEEEecc
Q 011970 283 NEKL-LVKQENENLQIL--DVRNAELMEVSRTEFMTPSA-FIFLYENQLFL-TFR-N--RTVAVWNF--R-GELVTSFED 351 (474)
Q Consensus 283 ~~~l-l~~~~D~tIkIW--Dv~tg~~~~~l~~h~~~v~s-v~Fspdg~lla-S~s-D--~tIklWd~--~-G~ll~tl~g 351 (474)
+..+ .....||--+|+ |..++....+..| ...|.. +.+.++++.+. ++. + ..-.||-+ + |.-++.|+.
T Consensus 247 ~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G-~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~ 325 (353)
T PF00930_consen 247 GNEFLWISERDGYRHLYLYDLDGGKPRQLTSG-DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTC 325 (353)
T ss_dssp SSEEEEEEETTSSEEEEEEETTSSEEEESS-S-SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESST
T ss_pred CCEEEEEEEcCCCcEEEEEcccccceeccccC-ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccC
Confidence 4444 445567655554 6666665544444 445644 55777766543 444 2 35566665 5 667888887
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 352 HLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 352 H~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
....+ .++.|||||++++-.|.
T Consensus 326 ~~~~~-----~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 326 EDGDH-----YSASFSPDGKYYVDTYS 347 (353)
T ss_dssp TSSTT-----EEEEE-TTSSEEEEEEE
T ss_pred CCCCc-----eEEEECCCCCEEEEEEc
Confidence 76652 48999999999987663
No 302
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.11 E-value=0.00012 Score=73.68 Aligned_cols=226 Identities=13% Similarity=0.128 Sum_probs=138.4
Q ss_pred EEEEeeCCCeEEeeeccccceeeEeecCCCc---e--EEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCC
Q 011970 100 IVFALAHSGVCAAFSRETNRRICFLNVSPDE---V--IRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPD 174 (474)
Q Consensus 100 ~las~s~dgtiklW~~~tg~~l~~l~g~~~~---~--i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~ 174 (474)
.++-+--+|.+.++..+--...++|++=... + --++-|++-|..+++.-..| .+.+=+...+.+.
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G----------~~~~v~~t~~~le 156 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRG----------SISGVYETEMVLE 156 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCC----------cEEEEecceeeee
Confidence 4444555677888876655666677652211 1 23566777787766522111 1111111122221
Q ss_pred CccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecC-CCeEEEE---EcCCcEEEEEEcC--CceEEEEecCCC
Q 011970 175 SGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYS---ISDKHVQEIKISP--GIMLLIFNRSSS 248 (474)
Q Consensus 175 ~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~-tg~~l~t---l~~~~V~~vafSp--g~~la~~s~~s~ 248 (474)
..+.+-.++---| ..+|+.-+-.++-+|+.|+.+.-||+. .++++.+ .|...|-+|.=|| .-.++++ +.
T Consensus 157 ~vq~wk~He~E~W--ta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TG---sY 231 (339)
T KOG0280|consen 157 KVQTWKVHEFEAW--TAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATG---SY 231 (339)
T ss_pred ecccccccceeee--eeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEe---cc
Confidence 1111222221234 678887666788999999999999998 5566654 3456899999995 4556654 67
Q ss_pred CccEEEEecC-CCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCce-----EEeccccCCceEEEEEc
Q 011970 249 HVPLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL-----MEVSRTEFMTPSAFIFL 322 (474)
Q Consensus 249 D~tIkLWdi~-tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~-----~~~l~~h~~~v~sv~Fs 322 (474)
|..|++||.+ =|+.|..-+ -.+.||.+...|..-.++|++..-+-.||-+++.+.. +...+.|..-.+.-.+.
T Consensus 232 De~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd 310 (339)
T KOG0280|consen 232 DECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWD 310 (339)
T ss_pred ccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccc
Confidence 8999999987 477775544 2378999998876566778888888889998876532 22344555444433342
Q ss_pred CCCcEEEEEc--CCcEE-EEeC
Q 011970 323 YENQLFLTFR--NRTVA-VWNF 341 (474)
Q Consensus 323 pdg~llaS~s--D~tIk-lWd~ 341 (474)
.-.-+|||.| |+.|+ +|-.
T Consensus 311 ~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 311 SKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred cccceeeeeeccccceeeeeee
Confidence 1123578865 88755 8864
No 303
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.11 E-value=0.00044 Score=69.18 Aligned_cols=228 Identities=10% Similarity=-0.002 Sum_probs=142.2
Q ss_pred CCeEEEEecCCCcEEEeecCCCeEEEEEcCCcE------EEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecC
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHV------QEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL 270 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V------~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~ 270 (474)
+--+||-|++-|..++|.+.+.+-...+.+... .-.+.+.- .+.+ ++.|.|+|+.+++-+ .++...|..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~-~~~i---~sndht~k~~~~~~~-s~~~~~h~~ 157 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKF-PLNI---ASNDHTGKTMVVSGD-SNKFAVHNQ 157 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccccc-ceee---ccCCcceeEEEEecC-cccceeecc
Confidence 344899999999999999987664333332222 22233311 1223 266899999998654 333322221
Q ss_pred -cceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CceE-E-eccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC--C
Q 011970 271 -HRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELM-E-VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--G 343 (474)
Q Consensus 271 -~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t-g~~~-~-~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~--G 343 (474)
-.+.+++.+ +++..+++-+.-..|-.+.+.. ++.+ + ......+.-....||....+||++. ||++.|||++ +
T Consensus 158 ~~~~ns~~~s-nd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 158 NLTQNSLHYS-NDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred ccceeeeEEc-CCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence 125777765 5566555567778888887764 4433 3 2344445556778999999999999 9999999995 6
Q ss_pred cEEEEeccCCCCcCCCCeeEEEECCCC--CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccC
Q 011970 344 ELVTSFEDHLLWHPDCNTNNIYITSDQ--DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELG 421 (474)
Q Consensus 344 ~ll~tl~gH~~~~~~~~v~svafSpDg--~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~ 421 (474)
.+..+..... .+++..++.+-|||-| ++|. .++ .=+-+.+-|+.+++-.+.+.--.+ +..
T Consensus 237 tpm~~~sstr-p~hnGa~R~c~Fsl~g~lDLLf-~sE----------hfs~~hv~D~R~~~~~q~I~i~~d----~~~-- 298 (344)
T KOG4532|consen 237 TPMAEISSTR-PHHNGAFRVCRFSLYGLLDLLF-ISE----------HFSRVHVVDTRNYVNHQVIVIPDD----VER-- 298 (344)
T ss_pred cchhhhcccC-CCCCCceEEEEecCCCcceEEE-Eec----------CcceEEEEEcccCceeeEEecCcc----ccc--
Confidence 6554333111 1122347999999865 3343 222 146788899988876665544332 000
Q ss_pred CCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCc
Q 011970 422 SSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 468 (474)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dgt 468 (474)
.-+.+.|+.-.|+.++..+...+++..
T Consensus 299 --------------------~~~tq~ifgt~f~~~n~s~~v~~e~~~ 325 (344)
T KOG4532|consen 299 --------------------KHNTQHIFGTNFNNENESNDVKNELQG 325 (344)
T ss_pred --------------------cccccccccccccCCCcccccccchhh
Confidence 011236888889999988888887653
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=2.2e-06 Score=95.65 Aligned_cols=247 Identities=15% Similarity=0.165 Sum_probs=152.7
Q ss_pred cCcchhhhhhhcccccccCCccc----ccchhhhhhcccccceeecccCCCCCcccccccccccccEEEEEee--ccEEE
Q 011970 29 DGFVNSVKKLQRREICSKRDRAF----SISNAQERFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA--RDIVF 102 (474)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s--~~~la 102 (474)
+...|---.|-+||.-+...+-. ...+.--|||++. .|--|+.- -..++|+ ...|+
T Consensus 1056 ~ap~N~t~Rl~~rel~~~y~gV~g~~~dr~~IFSRFr~w~---~frd~~~~---------------fTc~afs~~~~hL~ 1117 (1516)
T KOG1832|consen 1056 EAPLNMTGRLGTRELQSFYSGVHGNRRDRQFIFSRFRSWR---SFRDETAL---------------FTCIAFSGGTNHLA 1117 (1516)
T ss_pred hcchhhhhcccchhhcCcccccccCcccchhhHhhcccch---hhhccccc---------------eeeEEeecCCceEE
Confidence 44566666778888776655433 2334445666654 33334332 3445666 78899
Q ss_pred EeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEec-cCCCCCccceee
Q 011970 103 ALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIR-RGKPDSGFALFE 181 (474)
Q Consensus 103 s~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~-~G~~~~~~~lf~ 181 (474)
.|++.|.+|++|..+|+.....|. |...|.-|--|.||.++.+.|++++-. .-||+.. .|+.. .-|.
T Consensus 1118 vG~~~Geik~~nv~sG~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~Pl--------saLW~~~s~~~~~---Hsf~ 1185 (1516)
T KOG1832|consen 1118 VGSHAGEIKIFNVSSGSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPL--------SALWDASSTGGPR---HSFD 1185 (1516)
T ss_pred eeeccceEEEEEccCccccccccc-cccccccccccCCcceeeeeccccCch--------HHHhccccccCcc---cccc
Confidence 999999999999999999999996 889999999999999998877655322 2367753 33321 1233
Q ss_pred eccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEE-EcC-----CcEEEEEEcCCceEEEEecCCCCccEEEE
Q 011970 182 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-ISD-----KHVQEIKISPGIMLLIFNRSSSHVPLKIL 255 (474)
Q Consensus 182 ~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~t-l~~-----~~V~~vafSpg~~la~~s~~s~D~tIkLW 255 (474)
. -. .|.|+. .-+.=+-|..-...-|+|++|+..+.| |.+ ..-..+.|||...|+.- |+ -||
T Consensus 1186 e--d~---~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln-----dG--vLW 1252 (1516)
T KOG1832|consen 1186 E--DK---AVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN-----DG--VLW 1252 (1516)
T ss_pred c--cc---eeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee-----Cc--eee
Confidence 2 22 689973 222222222334578999999997776 332 12356789996666543 22 389
Q ss_pred ecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcE
Q 011970 256 SIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQL 327 (474)
Q Consensus 256 di~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~l 327 (474)
|++.-+-++.|........ =.|. |.|..+++-+ .|||++|-++++....- .--+|.|..-|..
T Consensus 1253 DvR~~~aIh~FD~ft~~~~-G~FH-P~g~eVIINS-----EIwD~RTF~lLh~VP~L--dqc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1253 DVRIPEAIHRFDQFTDYGG-GGFH-PSGNEVIINS-----EIWDMRTFKLLHSVPSL--DQCAVTFNSTGDV 1315 (1516)
T ss_pred eeccHHHHhhhhhheeccc-cccc-CCCceEEeec-----hhhhhHHHHHHhcCccc--cceEEEeccCccc
Confidence 9987776766642211111 1244 4454555543 49999998877543221 1235566655544
No 305
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.01 E-value=3.1e-06 Score=94.45 Aligned_cols=186 Identities=17% Similarity=0.220 Sum_probs=130.2
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEE--cCCcEEEEEEc-CCceEEEEecCCCCcc-EEEEecC-CCeEEE
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKHVQEIKIS-PGIMLLIFNRSSSHVP-LKILSIE-DGTVLK 264 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl--~~~~V~~vafS-pg~~la~~s~~s~D~t-IkLWdi~-tG~~L~ 264 (474)
.++|+ .+-..|+-|+.-|.||++++.+|...-+. |+..|.-|--| +|.+++++++.| .| ..||+.. +|...+
T Consensus 1106 c~afs-~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S--~PlsaLW~~~s~~~~~H 1182 (1516)
T KOG1832|consen 1106 CIAFS-GGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS--SPLSALWDASSTGGPRH 1182 (1516)
T ss_pred eEEee-cCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecccc--CchHHHhccccccCccc
Confidence 58998 78889999999999999999999977655 45678888888 688888775432 43 6799975 455666
Q ss_pred EEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe-cccc---CCceEEEEEcCCCcEEEEEcCCcEEEEe
Q 011970 265 VFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV-SRTE---FMTPSAFIFLYENQLFLTFRNRTVAVWN 340 (474)
Q Consensus 265 tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~-l~~h---~~~v~sv~Fspdg~llaS~sD~tIklWd 340 (474)
+|.+ -..|.|+.. -..-+.|.+-.-..|||++|+..+.+ +.+- +-.-.-+.|||+..|++ .|| -|||
T Consensus 1183 sf~e----d~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWD 1253 (1516)
T KOG1832|consen 1183 SFDE----DKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLWD 1253 (1516)
T ss_pred cccc----cceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCc--eeee
Confidence 6653 356777632 22333455557788999999987665 3321 11123456899888875 355 4799
Q ss_pred CC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 341 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 341 ~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
++ -+-++.|..-... -.=.|+|.|.-++.-+. |||+.|=+.|++...
T Consensus 1254 vR~~~aIh~FD~ft~~------~~G~FHP~g~eVIINSE----------------IwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1254 VRIPEAIHRFDQFTDY------GGGGFHPSGNEVIINSE----------------IWDMRTFKLLHSVPS 1301 (1516)
T ss_pred eccHHHHhhhhhheec------ccccccCCCceEEeech----------------hhhhHHHHHHhcCcc
Confidence 96 6667766544422 12349999999997654 899999888876644
No 306
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.028 Score=59.07 Aligned_cols=270 Identities=11% Similarity=0.103 Sum_probs=180.1
Q ss_pred EEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCce
Q 011970 110 CAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPG 189 (474)
Q Consensus 110 iklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~ 189 (474)
+.+++..+++....+.. . .....+.++|+|..+..+.... ++ +-.+... .+. ...+-.....++.
T Consensus 13 ~~v~~~~~~~~~~~~~~-~-~~~~~v~~~~~g~~~~v~~~~~-~~----------~~~~~~~-~n~-~~~~~~~g~~~p~ 77 (381)
T COG3391 13 VSVINTGTNKVTAAISL-G-RGPGGVAVNPDGTQVYVANSGS-ND----------VSVIDAT-SNT-VTQSLSVGGVYPA 77 (381)
T ss_pred eEEEeecccEEEEEeec-C-CCCceeEEcCccCEEEEEeecC-ce----------eeecccc-cce-eeeeccCCCcccc
Confidence 55666666665555553 2 2568899999997665443222 11 1122222 111 1111111114555
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEe
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~ 267 (474)
.+++++...+..+....+..|.+-|.++.+++.++. +..-..++++| +..+.++.....+.++-+.|-.+++.+++..
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 788875555588888888999999999999888886 45678899997 5577776543247899999999999998865
Q ss_pred ecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEE-e---ccccCCceEEEEEcCCCcEEEEEc--C--CcEEE
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELME-V---SRTEFMTPSAFIFLYENQLFLTFR--N--RTVAV 338 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~-~---l~~h~~~v~sv~Fspdg~llaS~s--D--~tIkl 338 (474)
--... ..++|. |+++++.+. ..+++|.+.|.++....+ . ...-...+.-++++|+|+.+-... + ++|..
T Consensus 158 vG~~P-~~~a~~-p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~ 235 (381)
T COG3391 158 VGNTP-TGVAVD-PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK 235 (381)
T ss_pred cCCCc-ceEEEC-CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence 32233 778876 678877776 589999999988777664 1 122334677899999999555443 3 68888
Q ss_pred EeCC-CcEEEE-eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 339 WNFR-GELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 339 Wd~~-G~ll~t-l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
-|.. +....+ +..-..+ -..++++|+|+.+-.... ..+++.+=|-.+.+...++....
T Consensus 236 id~~~~~v~~~~~~~~~~~-----~~~v~~~p~g~~~yv~~~----------~~~~V~vid~~~~~v~~~~~~~~ 295 (381)
T COG3391 236 IDTATGNVTATDLPVGSGA-----PRGVAVDPAGKAAYVANS----------QGGTVSVIDGATDRVVKTGPTGN 295 (381)
T ss_pred EeCCCceEEEeccccccCC-----CCceeECCCCCEEEEEec----------CCCeEEEEeCCCCceeeeecccc
Confidence 8885 665554 2222211 246899999999987643 25889999988888888776655
No 307
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.97 E-value=0.00068 Score=67.87 Aligned_cols=167 Identities=13% Similarity=0.019 Sum_probs=109.1
Q ss_pred EEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecC--CCeEEE-EEeecCcceeE
Q 011970 201 LTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIE--DGTVLK-VFYHLLHRNKK 275 (474)
Q Consensus 201 LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~--tG~~L~-tl~~h~~~v~~ 275 (474)
|--++.|.|+|+.++..+..-..++- -.+.++++||++.+.+.-.++.+ |-++.|. .-..++ +...-.++-+.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~--Vf~y~id~~sey~~~~~~a~t~D~gF~ 208 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRR--VFRYAIDDESEYIENIYEAPTSDHGFY 208 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCc--ceEEEeCCccceeeeeEecccCCCcee
Confidence 33468899999999987665555553 34889999987766665444433 5455443 333455 33344566789
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEECCCCc-eE----EeccccCCceEEEEEcCCCcE---EEEEcCCcEEEEeCC-CcEE
Q 011970 276 VDFIEQFNEKLLVKQENENLQILDVRNAE-LM----EVSRTEFMTPSAFIFLYENQL---FLTFRNRTVAVWNFR-GELV 346 (474)
Q Consensus 276 V~F~~~~~~~ll~~~~D~tIkIWDv~tg~-~~----~~l~~h~~~v~sv~Fspdg~l---laS~sD~tIklWd~~-G~ll 346 (474)
+.|++ .+..++++..|+++-|||+++-. ++ .+-..|.+.++.+.|+|.|-+ |.|-.=+-+.|-|++ +.-.
T Consensus 209 ~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 209 NSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred eeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 99984 57888999999999999999844 22 234569999999999976654 222225678888884 5533
Q ss_pred EEeccCCCCcCCCCeeEEEECCCCCEEEEEecC
Q 011970 347 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 379 (474)
Q Consensus 347 ~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~ 379 (474)
+...- -..+.|+|..|-|...+.+
T Consensus 288 q~I~i---------~~d~~~~~~tq~ifgt~f~ 311 (344)
T KOG4532|consen 288 QVIVI---------PDDVERKHNTQHIFGTNFN 311 (344)
T ss_pred eEEec---------Ccccccccccccccccccc
Confidence 32211 1234566666766665553
No 308
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.96 E-value=0.012 Score=63.81 Aligned_cols=279 Identities=12% Similarity=0.106 Sum_probs=149.9
Q ss_pred eeccEEEEeeCCCeEEeeeccccceeeEeecCCCc-------eEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEe
Q 011970 96 AARDIVFALAHSGVCAAFSRETNRRICFLNVSPDE-------VIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 168 (474)
Q Consensus 96 ~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~-------~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i 168 (474)
+.++.|+.++.++.+...|..||+.+=..+..... ..+.+++. +++.++.++ .+ ..+.-.|.
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~----~~------g~v~AlD~ 127 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGT----FD------GRLVALDA 127 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEec----CC------CeEEEEEC
Confidence 44778888888999999999999988665432210 01111221 224455433 23 35555677
Q ss_pred ccCCCCCccceeeeccccC-------ceEEEEeCCCCeEEEEe--------cCCCcEEEeecCCCeEEEEEcC-------
Q 011970 169 RRGKPDSGFALFESESLKW-------PGFVEFDDVNGKVLTYS--------AQDSIYKVFDLKNYTMLYSISD------- 226 (474)
Q Consensus 169 ~~G~~~~~~~lf~~~~~~~-------~~~V~Fs~~nGk~LaS~--------s~D~tiKlWdl~tg~~l~tl~~------- 226 (474)
++|+. +|+.+.... -.+..+. ++.+++.. ..++.+.-.|.+||+.+.....
T Consensus 128 ~TG~~-----~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~ 200 (488)
T cd00216 128 ETGKQ-----VWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNA 200 (488)
T ss_pred CCCCE-----eeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCC
Confidence 88886 444321110 0123443 45554432 2367788889999998876542
Q ss_pred ---------------CcEE-EEEEcC-CceEEEEecCC---------------CCccEEEEecCCCeEEEEEeecCccee
Q 011970 227 ---------------KHVQ-EIKISP-GIMLLIFNRSS---------------SHVPLKILSIEDGTVLKVFYHLLHRNK 274 (474)
Q Consensus 227 ---------------~~V~-~vafSp-g~~la~~s~~s---------------~D~tIkLWdi~tG~~L~tl~~h~~~v~ 274 (474)
..|| ..++.+ ++++.+.+.++ .+..|.-+|++||+.+-.++.-.+..+
T Consensus 201 ~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~ 280 (488)
T cd00216 201 FPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLW 280 (488)
T ss_pred CCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCc
Confidence 1122 244553 45555553221 123688899999999988762112111
Q ss_pred E------EEEEe---cCCC---eEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEE-----------
Q 011970 275 K------VDFIE---QFNE---KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF----------- 331 (474)
Q Consensus 275 ~------V~F~~---~~~~---~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~----------- 331 (474)
. ..+.+ -+++ .+++++.++.+...|.++|+.+-...... ..++.+| +.+++.+
T Consensus 281 ~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~-~~vyv~~~~~~~~~~~~~ 356 (488)
T cd00216 281 DYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP-GLVYLGAFHIPLGLPPQK 356 (488)
T ss_pred ccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC-ceEEEccccccccCcccc
Confidence 1 11111 1222 35667899999999999999874321100 0112223 2232211
Q ss_pred ------c-CCcEEEEeC-CCcEEEEeccCC---CCcC-CCC-eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 332 ------R-NRTVAVWNF-RGELVTSFEDHL---LWHP-DCN-TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 332 ------s-D~tIklWd~-~G~ll~tl~gH~---~~~~-~~~-v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
. ++.+---|. +|+.+-+.+-.. .|.. .+. ...++. .|.+|..++. ||.|.-.|.
T Consensus 357 ~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~-----------dG~l~ald~ 423 (488)
T cd00216 357 KKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAA-----------DGYFRAFDA 423 (488)
T ss_pred cCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECC-----------CCeEEEEEC
Confidence 1 344545555 355544333210 0000 000 011222 4567776665 999999999
Q ss_pred CCCeEEEEecC
Q 011970 399 LTGKCLAKINA 409 (474)
Q Consensus 399 ~tG~cl~tl~g 409 (474)
.||+.+.+.+-
T Consensus 424 ~tG~~lW~~~~ 434 (488)
T cd00216 424 TTGKELWKFRT 434 (488)
T ss_pred CCCceeeEEEC
Confidence 99999988754
No 309
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.93 E-value=3.4e-05 Score=49.62 Aligned_cols=27 Identities=15% Similarity=0.502 Sum_probs=26.2
Q ss_pred CEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 447 DITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 447 ~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|+++.|+|+++.+++|+.|+.|++|+
T Consensus 14 ~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 14 PVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 899999999999999999999999997
No 310
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.89 E-value=0.039 Score=57.81 Aligned_cols=247 Identities=18% Similarity=0.167 Sum_probs=141.4
Q ss_pred eEEEEEEeeCCCEEEEE-EeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCC-
Q 011970 131 VIRSLFYNKNNDSLITV-SVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS- 208 (474)
Q Consensus 131 ~i~sv~fspdg~~Lis~-S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~- 208 (474)
.+....+||||+.||-+ +..|++. .++++.|+.+|+.... .+.. .. ..+++|. +||+.|.+...|.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~------~~l~v~Dl~tg~~l~d--~i~~--~~-~~~~~W~-~d~~~~~y~~~~~~ 192 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEW------YTLRVFDLETGKFLPD--GIEN--PK-FSSVSWS-DDGKGFFYTRFDED 192 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSE------EEEEEEETTTTEEEEE--EEEE--EE-SEEEEEC-TTSSEEEEEECSTT
T ss_pred EeeeeeECCCCCEEEEEecCCCCce------EEEEEEECCCCcCcCC--cccc--cc-cceEEEe-CCCCEEEEEEeCcc
Confidence 34467889999988755 5555555 7789999999985221 1111 11 1138998 7999988877554
Q ss_pred ----------cEEEeecCCCe----EEEEEcCC-c-EEEEEEcC-CceEEEEecCCCC-ccEEEEecCCC----eEEEEE
Q 011970 209 ----------IYKVFDLKNYT----MLYSISDK-H-VQEIKISP-GIMLLIFNRSSSH-VPLKILSIEDG----TVLKVF 266 (474)
Q Consensus 209 ----------tiKlWdl~tg~----~l~tl~~~-~-V~~vafSp-g~~la~~s~~s~D-~tIkLWdi~tG----~~L~tl 266 (474)
.|++|.+.++. +++.-.+. . ...+..|+ +..|++.+..+.+ ..+.+-++.++ ...+.+
T Consensus 193 ~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l 272 (414)
T PF02897_consen 193 QRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL 272 (414)
T ss_dssp TSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred cccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence 37788887664 45544443 2 66888896 5666655554555 67889999875 233333
Q ss_pred eecCc-ceeEEEEEecCCCeEEEEe----CCCcEEEEECCCCce---EEeccccCCceEEEEEcC-CCcEEEEEc-CC--
Q 011970 267 YHLLH-RNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNAEL---MEVSRTEFMTPSAFIFLY-ENQLFLTFR-NR-- 334 (474)
Q Consensus 267 ~~h~~-~v~~V~F~~~~~~~ll~~~----~D~tIkIWDv~tg~~---~~~l~~h~~~v~sv~Fsp-dg~llaS~s-D~-- 334 (474)
..... ....+... ++.+.+-. .++.|---++.+... ..++..|...+.--.+.. .+.++++-. |+
T Consensus 273 ~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~ 349 (414)
T PF02897_consen 273 SPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSS 349 (414)
T ss_dssp EESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEE
T ss_pred eCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCcc
Confidence 32222 22333322 56555532 456666667777653 334445554333223333 445666665 65
Q ss_pred cEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEE-EEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 011970 335 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKAEPEDQWMEGSAGSINVSSILTGKCL 404 (474)
Q Consensus 335 tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~L-aS~s~~~~~~~~~~s~DgtIklWdi~tG~cl 404 (474)
.|+++|+. |.....+.--... .|..+...++++.+ ++++. --.-.+|--+|+.+|+..
T Consensus 350 ~l~v~~~~~~~~~~~~~~p~~g----~v~~~~~~~~~~~~~~~~ss--------~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 350 RLRVYDLDDGKESREIPLPEAG----SVSGVSGDFDSDELRFSYSS--------FTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEETT-TEEEEEEESSSSS----EEEEEES-TT-SEEEEEEEE--------TTEEEEEEEEETTTTCEE
T ss_pred EEEEEECCCCcEEeeecCCcce----EEeccCCCCCCCEEEEEEeC--------CCCCCEEEEEECCCCCEE
Confidence 78899998 8877665533221 24555555655444 33332 123478889999998763
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.83 E-value=0.0034 Score=64.25 Aligned_cols=203 Identities=14% Similarity=0.189 Sum_probs=120.0
Q ss_pred EEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcce--eEEEEEecCCCeEEEEe-----CCCcEEEEECC-
Q 011970 231 EIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN--KKVDFIEQFNEKLLVKQ-----ENENLQILDVR- 301 (474)
Q Consensus 231 ~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v--~~V~F~~~~~~~ll~~~-----~D~tIkIWDv~- 301 (474)
.++++| ....+.++.-- -.-+.+||..+|+.++.+.-...+- -=..|+ ++|..|.+.- ..|-|-|||++
T Consensus 9 ~~a~~p~~~~avafaRRP-G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs-~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRP-GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFS-PDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ceeeCCCCCeEEEEEeCC-CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEc-CCCCEEEEeccccCCCcEEEEEEECcC
Confidence 455565 33333333211 1136678888999887765211111 013465 6677777764 24889999999
Q ss_pred CCceEEeccccCCceEEEEEcCCCcEEEEEc-----C---CcEE-----------EEeC-CCcEEEE--e--ccCCCCcC
Q 011970 302 NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-----N---RTVA-----------VWNF-RGELVTS--F--EDHLLWHP 357 (474)
Q Consensus 302 tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-----D---~tIk-----------lWd~-~G~ll~t--l--~gH~~~~~ 357 (474)
+-+.+..+.+|...+-.+.+.|||+.|+-+. . +-.| +-|. +|+++.. | +.|.+.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS-- 164 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS-- 164 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc--
Confidence 5556677888888889999999998777653 1 2223 3445 4887765 6 557665
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccc
Q 011970 358 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 437 (474)
Q Consensus 358 ~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (474)
++-+++.+||..++-.=. +.+.. ..---|-+++ -|+.+.-+..-.. ....|
T Consensus 165 ---iRHLa~~~~G~V~~a~Q~-qg~~~---~~~PLva~~~--~g~~~~~~~~p~~--------------------~~~~l 215 (305)
T PF07433_consen 165 ---IRHLAVDGDGTVAFAMQY-QGDPG---DAPPLVALHR--RGGALRLLPAPEE--------------------QWRRL 215 (305)
T ss_pred ---eeeEEecCCCcEEEEEec-CCCCC---ccCCeEEEEc--CCCcceeccCChH--------------------HHHhh
Confidence 689999999998775422 11000 0011233332 2222322222110 00000
Q ss_pred cccccccccCEEEEEEcCCCCEE-EEEcCCCcEEEcc
Q 011970 438 RSTVGEALEDITSLFYDEERNEI-YTGNRHGLVHVWS 473 (474)
Q Consensus 438 ~~~~~~~l~~V~slafSpDg~~L-aSgs~DgtVklWd 473 (474)
. ..|=||+|++||..+ +|+-+-+.+.+||
T Consensus 216 ~-------~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 216 N-------GYIGSIAADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred C-------CceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence 0 288999999999876 5666888999996
No 312
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.77 E-value=0.021 Score=59.07 Aligned_cols=224 Identities=14% Similarity=0.106 Sum_probs=123.0
Q ss_pred eeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCC
Q 011970 138 NKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN 217 (474)
Q Consensus 138 spdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t 217 (474)
||||+.++.+.... ..+..=.-....|+|+.+++.. ++... ........|| |||+.||... |+.+-++++.+
T Consensus 1 S~d~~~~l~~~~~~-~~~r~s~~~~y~i~d~~~~~~~---~l~~~--~~~~~~~~~s-P~g~~~~~v~-~~nly~~~~~~ 72 (353)
T PF00930_consen 1 SPDGKFVLFATNYT-KQWRHSFKGDYYIYDIETGEIT---PLTPP--PPKLQDAKWS-PDGKYIAFVR-DNNLYLRDLAT 72 (353)
T ss_dssp -TTSSEEEEEEEEE-EESSSEEEEEEEEEETTTTEEE---ESS-E--ETTBSEEEE--SSSTEEEEEE-TTEEEEESSTT
T ss_pred CCCCCeEEEEECcE-EeeeeccceeEEEEecCCCceE---ECcCC--ccccccceee-cCCCeeEEEe-cCceEEEECCC
Confidence 68888776643321 1122222256778898887752 23332 2234478998 7999999986 67899999888
Q ss_pred CeEEE-EEcC---------C---------cEEEEEEcC-CceEEEEecC-------------C----------------C
Q 011970 218 YTMLY-SISD---------K---------HVQEIKISP-GIMLLIFNRS-------------S----------------S 248 (474)
Q Consensus 218 g~~l~-tl~~---------~---------~V~~vafSp-g~~la~~s~~-------------s----------------~ 248 (474)
++..+ |-.+ + .-..+-||| +..||...-+ . +
T Consensus 73 ~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 73 GQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAG 152 (353)
T ss_dssp SEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTT
T ss_pred CCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCC
Confidence 76443 1111 0 113477887 4444433221 0 0
Q ss_pred C----ccEEEEecCCCeEEE-EEe----ecCcceeEEEEEecCCCeEEEE--eC---CCcEEEEECCCCceEEeccc-cC
Q 011970 249 H----VPLKILSIEDGTVLK-VFY----HLLHRNKKVDFIEQFNEKLLVK--QE---NENLQILDVRNAELMEVSRT-EF 313 (474)
Q Consensus 249 D----~tIkLWdi~tG~~L~-tl~----~h~~~v~~V~F~~~~~~~ll~~--~~---D~tIkIWDv~tg~~~~~l~~-h~ 313 (474)
+ ..+.++|+++|+... ... .-..-+..+.|.+ ++.++++. .. .-.+.+.|+.++++...... ..
T Consensus 153 ~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~ 231 (353)
T PF00930_consen 153 DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSD 231 (353)
T ss_dssp S---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESS
T ss_pred CcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCC
Confidence 1 134567888886532 111 1234567888874 44446654 33 34456789988887543321 22
Q ss_pred Cce---EEEEEc-CCCcEEEEEc--CCcEEEEeC--CCcEEEEeccCCCCcCCCCe-eEEEECCCCCEEEE
Q 011970 314 MTP---SAFIFL-YENQLFLTFR--NRTVAVWNF--RGELVTSFEDHLLWHPDCNT-NNIYITSDQDLIIS 375 (474)
Q Consensus 314 ~~v---~sv~Fs-pdg~llaS~s--D~tIklWd~--~G~ll~tl~gH~~~~~~~~v-~svafSpDg~~LaS 375 (474)
.++ ..+.|. +++..++-.+ ||--.|+-+ +|...+-|+.. .|. | .-+.++++++.|.=
T Consensus 232 ~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G-~~~----V~~i~~~d~~~~~iyf 297 (353)
T PF00930_consen 232 GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSG-DWE----VTSILGWDEDNNRIYF 297 (353)
T ss_dssp SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-S-SS-----EEEEEEEECTSSEEEE
T ss_pred cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccC-cee----ecccceEcCCCCEEEE
Confidence 233 356665 6666666554 885555554 57777766643 442 5 45788898887653
No 313
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.76 E-value=0.0039 Score=69.19 Aligned_cols=202 Identities=12% Similarity=0.120 Sum_probs=124.5
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC--------CceEEEEecCCCCccEEEEec
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISP--------GIMLLIFNRSSSHVPLKILSI 257 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSp--------g~~la~~s~~s~D~tIkLWdi 257 (474)
.+.-++|+ +||+++.+.+.+. +.|.-+..+. ...=+.++|++ ++..+.. .+.+|.+.|.
T Consensus 236 npd~v~~s-pdGk~afvTsyNs-------E~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V----~gn~V~VID~ 303 (635)
T PRK02888 236 NLDNVDTD-YDGKYAFSTCYNS-------EEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI----GGSKVPVVDG 303 (635)
T ss_pred CcccceEC-CCCCEEEEeccCc-------ccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE----CCCEEEEEEC
Confidence 45678998 7999988776432 3344344332 11224555553 2322222 1468999999
Q ss_pred CC----C-eEEEEEeecCcceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCce------------E-EeccccCCceEE
Q 011970 258 ED----G-TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAEL------------M-EVSRTEFMTPSA 318 (474)
Q Consensus 258 ~t----G-~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~~------------~-~~l~~h~~~v~s 318 (474)
.+ | +.+..+.- ...-..|+++ ||+.++++++ .+.++-+.|+++.+- . ++.. ...+.-
T Consensus 304 ~t~~~~~~~v~~yIPV-GKsPHGV~vS-PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLH 379 (635)
T PRK02888 304 RKAANAGSALTRYVPV-PKNPHGVNTS-PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLH 379 (635)
T ss_pred CccccCCcceEEEEEC-CCCccceEEC-CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcce
Confidence 88 4 56666652 1345778887 7888888865 799999999998551 1 2222 234566
Q ss_pred EEEcCCCcEEEEEc-CCcEEEEeCCC-----------cEEEEeccCCCCcCCCCeeEEEE------CCCCCEEEEEecCC
Q 011970 319 FIFLYENQLFLTFR-NRTVAVWNFRG-----------ELVTSFEDHLLWHPDCNTNNIYI------TSDQDLIISYCKAE 380 (474)
Q Consensus 319 v~Fspdg~llaS~s-D~tIklWd~~G-----------~ll~tl~gH~~~~~~~~v~svaf------SpDg~~LaS~s~~~ 380 (474)
.+|.++|..+.|-- |..|-.||+.. ..+..+.-|... --+.- .|||++|+|.++-.
T Consensus 380 TaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~p------gh~~~~~g~t~~~dgk~l~~~nk~s 453 (635)
T PRK02888 380 TAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQP------GHNHASMGETKEADGKWLVSLNKFS 453 (635)
T ss_pred EEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcc------ceeeecCCCcCCCCCCEEEEccccc
Confidence 78999999888877 99999999742 355555555442 12333 79999999998732
Q ss_pred CccccccC--CCCeEEEEeCCCCeEEEEecCCC
Q 011970 381 PEDQWMEG--SAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 381 ~~~~~~~s--~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
+|-=+..| .-.+-.|-|| +|.-++-+..|.
T Consensus 454 kdrfl~vgpl~pen~qlidI-sgdkM~lv~d~p 485 (635)
T PRK02888 454 KDRFLPVGPLHPENDQLIDI-SGDKMKLVHDGP 485 (635)
T ss_pred cccccCCCCCCCCcceeEEc-cCCeeEEEecCC
Confidence 22111111 1123345666 676666664443
No 314
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.038 Score=58.12 Aligned_cols=230 Identities=16% Similarity=0.149 Sum_probs=146.4
Q ss_pred CceEEEEeCCCC-eEEEEecCCCcEEEeecCCCeEEEEEc-C-CcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeE
Q 011970 187 WPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLYSIS-D-KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTV 262 (474)
Q Consensus 187 ~~~~V~Fs~~nG-k~LaS~s~D~tiKlWdl~tg~~l~tl~-~-~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~ 262 (474)
++..|... ++| +..+.-....++.+-+.....-..+.. + ..-+.++++| +.+..... ..+..|.+.|+++-++
T Consensus 32 ~~~~v~~~-~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~--~~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVN-PDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTT--GDSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEc-CccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEec--CCCCeEEEEcCcccce
Confidence 45567776 677 444443333355555533111111111 1 2345788886 55455543 3467899999888888
Q ss_pred EEEEe-ecCcceeEEEEEecCCCeEEEEe---CCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEE-c-CCcE
Q 011970 263 LKVFY-HLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF-R-NRTV 336 (474)
Q Consensus 263 L~tl~-~h~~~v~~V~F~~~~~~~ll~~~---~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~-s-D~tI 336 (474)
+.+.. +. .-..++|. ++++++-++. .++++.+.|-.+++.+++..... .+..++|.|+|+.+... . +++|
T Consensus 109 ~~~~~vG~--~P~~~~~~-~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P~~~a~~p~g~~vyv~~~~~~~v 184 (381)
T COG3391 109 LGSIPVGL--GPVGLAVD-PDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TPTGVAVDPDGNKVYVTNSDDNTV 184 (381)
T ss_pred eeEeeecc--CCceEEEC-CCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-CcceEEECCCCCeEEEEecCCCeE
Confidence 87776 32 33567765 6677777763 37999999999999887733222 44889999999955554 4 9999
Q ss_pred EEEeCCCcEEEE------eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 337 AVWNFRGELVTS------FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 337 klWd~~G~ll~t------l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
.+-|.++.-+.. ..-+... ..++++|||+++..... .+.|++|-.-|..+++...+...-
T Consensus 185 ~vi~~~~~~v~~~~~~~~~~~~~~P------~~i~v~~~g~~~yV~~~--------~~~~~~v~~id~~~~~v~~~~~~~ 250 (381)
T COG3391 185 SVIDTSGNSVVRGSVGSLVGVGTGP------AGIAVDPDGNRVYVAND--------GSGSNNVLKIDTATGNVTATDLPV 250 (381)
T ss_pred EEEeCCCcceeccccccccccCCCC------ceEEECCCCCEEEEEec--------cCCCceEEEEeCCCceEEEecccc
Confidence 999987654442 2222222 57999999997776654 222578888898888877652111
Q ss_pred CCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCC-CcEE
Q 011970 411 NCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRH-GLVH 470 (474)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~D-gtVk 470 (474)
.. + .-..++++|+|+.++..... ++|.
T Consensus 251 ~~--------------------------------~-~~~~v~~~p~g~~~yv~~~~~~~V~ 278 (381)
T COG3391 251 GS--------------------------------G-APRGVAVDPAGKAAYVANSQGGTVS 278 (381)
T ss_pred cc--------------------------------C-CCCceeECCCCCEEEEEecCCCeEE
Confidence 10 0 23458999999999988543 4443
No 315
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.74 E-value=0.061 Score=59.18 Aligned_cols=279 Identities=14% Similarity=0.165 Sum_probs=156.1
Q ss_pred eccEEEEeeCCCeEEeeeccccceeeEeecCCCceE----------EEEEEeeCCCEEEEEEeecCCCccceeeeEEEEe
Q 011970 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVI----------RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 97 s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i----------~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw 166 (474)
.+++|+.++.++.+...|.+||+.+=..+......+ +.+++. ++.|+.++. +. .+.--
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~---dg-------~l~AL 135 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTL---DA-------RLVAL 135 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcC---CC-------EEEEE
Confidence 378888888899999999999998876553211112 122332 234444331 11 23333
Q ss_pred EeccCCCCCccceeeecc--c--cC-ce-EEEEeCCCCeEEEEec-----CCCcEEEeecCCCeEEEEEcC---------
Q 011970 167 YIRRGKPDSGFALFESES--L--KW-PG-FVEFDDVNGKVLTYSA-----QDSIYKVFDLKNYTMLYSISD--------- 226 (474)
Q Consensus 167 ~i~~G~~~~~~~lf~~~~--~--~~-~~-~V~Fs~~nGk~LaS~s-----~D~tiKlWdl~tg~~l~tl~~--------- 226 (474)
|..+|+. +|+... . .+ +. .-.. .+|++++..+ .++.|.-.|++||+.+.....
T Consensus 136 Da~TGk~-----~W~~~~~~~~~~~~~tssP~v--~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~ 208 (527)
T TIGR03075 136 DAKTGKV-----VWSKKNGDYKAGYTITAAPLV--VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLD 208 (527)
T ss_pred ECCCCCE-----EeecccccccccccccCCcEE--ECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccc
Confidence 5577886 333210 0 00 00 1111 1566666433 368899999999998865431
Q ss_pred ------------------------CcEEE-EEEcC-CceEEEEecC-----C----CCc----cEEEEecCCCeEEEEEe
Q 011970 227 ------------------------KHVQE-IKISP-GIMLLIFNRS-----S----SHV----PLKILSIEDGTVLKVFY 267 (474)
Q Consensus 227 ------------------------~~V~~-vafSp-g~~la~~s~~-----s----~D~----tIkLWdi~tG~~L~tl~ 267 (474)
..||. .++-| -+++...... . .|. .|-=.|++||+..-.|+
T Consensus 209 ~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q 288 (527)
T TIGR03075 209 KADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQ 288 (527)
T ss_pred ccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeee
Confidence 12332 35555 3333333211 1 122 56668999999998887
Q ss_pred ecCcceeEEEE--------EecCCC--eEE-EEeCCCcEEEEECCCCceEEe--ccccCCce------------------
Q 011970 268 HLLHRNKKVDF--------IEQFNE--KLL-VKQENENLQILDVRNAELMEV--SRTEFMTP------------------ 316 (474)
Q Consensus 268 ~h~~~v~~V~F--------~~~~~~--~ll-~~~~D~tIkIWDv~tg~~~~~--l~~h~~~v------------------ 316 (474)
...|-++.-++ .+.+++ .++ .++.+|.+-+.|-+||+++.. ...+..++
T Consensus 289 ~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~ 368 (527)
T TIGR03075 289 TTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARS 368 (527)
T ss_pred CCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCc
Confidence 43343333221 112343 344 478999999999999998621 00000000
Q ss_pred ---------------------EEEEEcCCCcEEEEEc-C---------------------------------CcEEEEeC
Q 011970 317 ---------------------SAFIFLYENQLFLTFR-N---------------------------------RTVAVWNF 341 (474)
Q Consensus 317 ---------------------~sv~Fspdg~llaS~s-D---------------------------------~tIklWd~ 341 (474)
...++.|+..++-... + +.+.-||+
T Consensus 369 ~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~ 448 (527)
T TIGR03075 369 ADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDP 448 (527)
T ss_pred CCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeC
Confidence 0145566555543322 2 45778888
Q ss_pred -CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 342 -RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 342 -~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
+|+.+-..+..... .-+. +.-.|.+++.+.. ||.++.+|..|||.|...+-..
T Consensus 449 ~tGk~~W~~~~~~p~-----~~~~-l~t~g~lvf~g~~-----------~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 449 ITGKIVWEHKEDFPL-----WGGV-LATAGDLVFYGTL-----------EGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred CCCceeeEecCCCCC-----CCcc-eEECCcEEEEECC-----------CCeEEEEECCCCCEeEEEeCCC
Confidence 48887766533222 1122 2225557776655 9999999999999998875543
No 316
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.73 E-value=0.048 Score=56.71 Aligned_cols=279 Identities=12% Similarity=0.164 Sum_probs=153.7
Q ss_pred CeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeee---cc
Q 011970 108 GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFES---ES 184 (474)
Q Consensus 108 gtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~---~~ 184 (474)
+.+-+.|-++|+.+-.+..+. .-.+.+||||+.+.+++.|-+-....=+---+.+||..+=++...+.+-.. ..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 378899999999988887644 445778999999998877654432222334556777654333111111110 01
Q ss_pred ccCceEEEEeCCCCeEEEE--ecCCCcEEEeecCCCeEEEEEcCCcEEEEEEc-CCceEEEEecCCCCccEEEEecC-CC
Q 011970 185 LKWPGFVEFDDVNGKVLTY--SAQDSIYKVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIE-DG 260 (474)
Q Consensus 185 ~~~~~~V~Fs~~nGk~LaS--~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~-tG 260 (474)
..++...++| .|||+|.- .+.-..|-|=|++..+.+..+..-..+.|==+ +++ +.+.. .|+.+---.+. +|
T Consensus 94 ~~~~~~~~ls-~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~-F~~lC---~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 94 VPYKNMFALS-ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRG-FSMLC---GDGSLLTVTLDADG 168 (342)
T ss_dssp S--GGGEEE--TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTE-EEEEE---TTSCEEEEEETSTS
T ss_pred cccccceEEc-cCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCc-eEEEe---cCCceEEEEECCCC
Confidence 2344467888 68887653 34566789999999998888764333333333 233 33321 24544444444 66
Q ss_pred eEEEEEeecCcceeEEEEE----ecCCCeEEEEeCCCcEEEEECCCCceE-----Eecc-cc--CCce----EEEEEcC-
Q 011970 261 TVLKVFYHLLHRNKKVDFI----EQFNEKLLVKQENENLQILDVRNAELM-----EVSR-TE--FMTP----SAFIFLY- 323 (474)
Q Consensus 261 ~~L~tl~~h~~~v~~V~F~----~~~~~~ll~~~~D~tIkIWDv~tg~~~-----~~l~-~h--~~~v----~sv~Fsp- 323 (474)
+..++-..--+.....-|. ...+++++--+.+|.|+--|+...... ..+. .+ ..|- -.+++.+
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc
Confidence 6653322100111111121 123456777778888887777655421 1111 00 1111 1367775
Q ss_pred CCcEEEE------Ec--CCcEEEE--eC-CCcEEEEecc-CCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCC
Q 011970 324 ENQLFLT------FR--NRTVAVW--NF-RGELVTSFED-HLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSA 390 (474)
Q Consensus 324 dg~llaS------~s--D~tIklW--d~-~G~ll~tl~g-H~~~~~~~~v~svafSpDg~-~LaS~s~~~~~~~~~~s~D 390 (474)
.+++++- ++ |.-=.|| |+ +++.+..++- |. +++|++|.|.+ +|...+. .+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~-------~~Si~Vsqd~~P~L~~~~~----------~~ 311 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP-------IDSIAVSQDDKPLLYALSA----------GD 311 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE-------ESEEEEESSSS-EEEEEET----------TT
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc-------cceEEEccCCCcEEEEEcC----------CC
Confidence 4455543 12 4434455 55 4999998873 32 57999999998 5544432 37
Q ss_pred CeEEEEeCCCCeEEEEecCCC
Q 011970 391 GSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 391 gtIklWdi~tG~cl~tl~gH~ 411 (474)
+++.++|..||+.++++++-.
T Consensus 312 ~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 312 GTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp TEEEEEETTT--EEEEE---S
T ss_pred CeEEEEeCcCCcEEeehhccC
Confidence 999999999999999997644
No 317
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.69 E-value=0.0012 Score=65.93 Aligned_cols=149 Identities=13% Similarity=0.110 Sum_probs=97.3
Q ss_pred CcEEEEECCCCceEEeccccCCceEEEEEcC-CCcEEEEEc-CCcEEEEeCC-Cc-EEEEeccCCCCcCCCCeeEEEECC
Q 011970 293 ENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITS 368 (474)
Q Consensus 293 ~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fsp-dg~llaS~s-D~tIklWd~~-G~-ll~tl~gH~~~~~~~~v~svafSp 368 (474)
++.++|+++--+.+....---..|.+++-.| +.+++++|+ ||.|-|||.+ +. .+..|..|... +|.|-|+|
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~-----i~eV~FHp 233 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAE-----IWEVHFHP 233 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhh-----hhheeccC
Confidence 5677888775443322222223477887776 455666777 9999999995 43 56678899876 68999999
Q ss_pred -CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccc-----ccccccccccc
Q 011970 369 -DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKL-----NKSSYIRSTVG 442 (474)
Q Consensus 369 -Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 442 (474)
++..|.+++. ||.+-.||. +++.|. +. .+. .+-++|+ .+..++.+-.+
T Consensus 234 k~p~~Lft~se-----------dGslw~wda-s~~~l~-i~-~~~------------s~~s~WLsgD~v~s~i~i~~ll~ 287 (319)
T KOG4714|consen 234 KNPEHLFTCSE-----------DGSLWHWDA-STTFLS-IS-NQA------------SVISSWLSGDPVKSRIEITSLLP 287 (319)
T ss_pred CCchheeEecC-----------CCcEEEEcC-CCceEE-ec-Ccc------------ccccccccCCcccceEeeecccc
Confidence 6788888765 999999995 566665 21 111 0111111 11234444444
Q ss_pred ccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 443 EALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 443 ~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
+-...|. .|+--|..|++|+.-+.|.|.++
T Consensus 288 ~~~~Sin--sfDV~g~~lVcgtd~eaIyl~~~ 317 (319)
T KOG4714|consen 288 SRSLSIN--SFDVLGPCLVCGTDAEAIYLTRH 317 (319)
T ss_pred ccceeee--eeeccCceEEeccccceEEEecc
Confidence 3334554 46667899999999999998764
No 318
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.69 E-value=0.00014 Score=74.60 Aligned_cols=148 Identities=8% Similarity=0.088 Sum_probs=105.5
Q ss_pred EEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCC-----eEEEEEeecCcceeE
Q 011970 202 TYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDG-----TVLKVFYHLLHRNKK 275 (474)
Q Consensus 202 aS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG-----~~L~tl~~h~~~v~~ 275 (474)
++.+-+..|-|=|++||--.+-.+...|.+..|.- +..+..+-+ .+.|-..|++.+ .|-+.|- |...+.+
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcR---ngeI~~iDLR~rnqG~~~~a~rly-h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCR---NGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEeccc---CCcEEEEEeeecccCCCcceEEEE-cCcchhh
Confidence 45567888889999888654444456788888884 555444422 356777787664 4555554 5566777
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEECCCCce---EEeccccCCceEEEE--EcCCCcEEEEEc-CCcEEEEeCC-CcEEEE
Q 011970 276 VDFIEQFNEKLLVKQENENLQILDVRNAEL---MEVSRTEFMTPSAFI--FLYENQLFLTFR-NRTVAVWNFR-GELVTS 348 (474)
Q Consensus 276 V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~---~~~l~~h~~~v~sv~--Fspdg~llaS~s-D~tIklWd~~-G~ll~t 348 (474)
+.-...++++|++++.+++|+|||++--+| ++...||-..-.-+- ..++...+++++ |---|||.++ |.++.+
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 665533567888899999999999998888 888889876444333 346667777777 8899999995 999998
Q ss_pred eccCC
Q 011970 349 FEDHL 353 (474)
Q Consensus 349 l~gH~ 353 (474)
+.-..
T Consensus 384 ipf~~ 388 (425)
T KOG2695|consen 384 IPFPY 388 (425)
T ss_pred cCCCC
Confidence 86433
No 319
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.65 E-value=0.0024 Score=68.31 Aligned_cols=145 Identities=14% Similarity=0.107 Sum_probs=91.7
Q ss_pred CCcEEEEEEcC-CceEEEEecCCCC-ccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe-CCCcEEEE--EC
Q 011970 226 DKHVQEIKISP-GIMLLIFNRSSSH-VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQIL--DV 300 (474)
Q Consensus 226 ~~~V~~vafSp-g~~la~~s~~s~D-~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkIW--Dv 300 (474)
...+..-+|+| +..++..+..... ..+.++|+.+|+.-+.++. .......+|+ |+|.+|+.+. .|+...|| |+
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~-~g~~~~P~fs-pDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF-NGNNGAPAFS-PDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc-CCccCCccCC-CCCCEEEEEECCCCCccEEEEcC
Confidence 34677788997 5555444333333 3599999999987665551 2445667887 7888888864 66766655 88
Q ss_pred CCCceEEeccccCCceEEEEEcCCCcEEEEEc--CCcEEEE--eCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 011970 301 RNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVW--NFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 376 (474)
Q Consensus 301 ~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~tIklW--d~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~ 376 (474)
.+++..+. ..-...-..=.|+|||+.++=.+ .|.-.|| |.+|.-++.+.-+...- ..-.+||||++|+..
T Consensus 270 ~~~~~~~L-t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~-----~~p~~SpdG~~i~~~ 343 (425)
T COG0823 270 DGKNLPRL-TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN-----SNPVWSPDGDKIVFE 343 (425)
T ss_pred CCCcceec-ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC-----cCccCCCCCCEEEEE
Confidence 88886553 22221112345899999998766 5544555 45677555444333320 134589999999987
Q ss_pred ec
Q 011970 377 CK 378 (474)
Q Consensus 377 s~ 378 (474)
+.
T Consensus 344 ~~ 345 (425)
T COG0823 344 SS 345 (425)
T ss_pred ec
Confidence 63
No 320
>PRK10115 protease 2; Provisional
Probab=97.60 E-value=0.19 Score=57.15 Aligned_cols=243 Identities=10% Similarity=0.169 Sum_probs=136.0
Q ss_pred ceEEEEEEeeCCCEEEEEEee-cCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC-
Q 011970 130 EVIRSLFYNKNNDSLITVSVY-ASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD- 207 (474)
Q Consensus 130 ~~i~sv~fspdg~~Lis~S~~-~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D- 207 (474)
-.+..+.+||||+.|+.+... |++. .++.+-++.+|+.... ... ..+ .+++|+ +||+.|.+...|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~------~~l~v~d~~tg~~l~~--~i~--~~~--~~~~w~-~D~~~~~y~~~~~ 193 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQ------YGIRFRNLETGNWYPE--LLD--NVE--PSFVWA-NDSWTFYYVRKHP 193 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEE------EEEEEEECCCCCCCCc--ccc--Ccc--eEEEEe-eCCCEEEEEEecC
Confidence 346778889999988765333 3333 6677778888874221 111 122 368998 689988887653
Q ss_pred -----CcEEEeecCCC----eEEEEEcCCcEE-EEEEc-CCceEEEEecCCCCccEEEEec--CCCeEEEEEeecCccee
Q 011970 208 -----SIYKVFDLKNY----TMLYSISDKHVQ-EIKIS-PGIMLLIFNRSSSHVPLKILSI--EDGTVLKVFYHLLHRNK 274 (474)
Q Consensus 208 -----~tiKlWdl~tg----~~l~tl~~~~V~-~vafS-pg~~la~~s~~s~D~tIkLWdi--~tG~~L~tl~~h~~~v~ 274 (474)
..|.++++.|+ .+++.-.++..+ ++..+ ++..+++.+....+..+.+++. .+|+....+..-.....
T Consensus 194 ~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 273 (686)
T PRK10115 194 VTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY 273 (686)
T ss_pred CCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE
Confidence 35677788888 255554344333 44455 5666666665566677999984 35553222221111112
Q ss_pred EEEEEecCCCeEEEEe--CCCcEEEE--ECC-CCceEEeccccC-CceEEEEEcCCCcEEEEEc-CCcEEEEeC--CCcE
Q 011970 275 KVDFIEQFNEKLLVKQ--ENENLQIL--DVR-NAELMEVSRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNF--RGEL 345 (474)
Q Consensus 275 ~V~F~~~~~~~ll~~~--~D~tIkIW--Dv~-tg~~~~~l~~h~-~~v~sv~Fspdg~llaS~s-D~tIklWd~--~G~l 345 (474)
.+. ..++.+.... ...+-+|. ++. .++...+..... ..+..+.+. .+.++++.. ++.-+|+-+ .+..
T Consensus 274 ~~~---~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~ 349 (686)
T PRK10115 274 SLD---HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTRE 349 (686)
T ss_pred EEE---eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCc
Confidence 221 2345555543 22344444 554 333333333323 367777777 556777777 776666654 4555
Q ss_pred EEEec-cCCCCcCCCCeeEEEEC--CC-CCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 011970 346 VTSFE-DHLLWHPDCNTNNIYIT--SD-QDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 402 (474)
Q Consensus 346 l~tl~-gH~~~~~~~~v~svafS--pD-g~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~ 402 (474)
+..+. +.... +..+.++ ++ +.++++++. -..-++|-.+|+.+++
T Consensus 350 ~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~ss--------~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 350 VIGIAFDDPAY-----VTWIAYNPEPETSRLRYGYSS--------MTTPDTLFELDMDTGE 397 (686)
T ss_pred eEEecCCCCce-----EeeecccCCCCCceEEEEEec--------CCCCCEEEEEECCCCc
Confidence 55554 22111 2233445 44 456666653 2345788899988875
No 321
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.60 E-value=0.0096 Score=64.11 Aligned_cols=214 Identities=14% Similarity=0.145 Sum_probs=117.4
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEE
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVF 266 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl 266 (474)
+|..++++ |||+.++-+ .|+.|-|......+-.... .-.+.+|++.+.+|+..+ ..+|+|..--+.+..+++
T Consensus 34 ~p~~ls~n-pngr~v~V~-g~geY~iyt~~~~r~k~~G---~g~~~vw~~~n~yAv~~~---~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 34 YPQSLSHN-PNGRFVLVC-GDGEYEIYTALAWRNKAFG---SGLSFVWSSRNRYAVLES---SSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp --SEEEE--TTSSEEEEE-ETTEEEEEETTTTEEEEEE---E-SEEEE-TSSEEEEE-T---TS-EEEEETTEE-TT---
T ss_pred CCeeEEEC-CCCCEEEEE-cCCEEEEEEccCCcccccC---ceeEEEEecCccEEEEEC---CCeEEEEEcCccccceEE
Confidence 57789998 799988875 4888888874333332222 234678888788888743 467888521122222233
Q ss_pred eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCCCc--
Q 011970 267 YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGE-- 344 (474)
Q Consensus 267 ~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~G~-- 344 (474)
.-. ..+..+- ++.||.-..++.|.+||+++++.++...-. .|..|.|+++|+++|=.++.+|-|.+.+-+
T Consensus 106 ~~~-~~~~~If-----~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~ 177 (443)
T PF04053_consen 106 KLP-FSVEKIF-----GGNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLEAV 177 (443)
T ss_dssp --S-S-EEEEE------SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHH
T ss_pred cCC-cccceEE-----cCcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecchhc
Confidence 311 1223332 355665545559999999999998775532 378999999999999999888999998755
Q ss_pred ----------EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCC
Q 011970 345 ----------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSP 414 (474)
Q Consensus 345 ----------ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~ 414 (474)
.+..+..-.. .|.+.+|-.| .+-|+. -.-||- +..|+.- +|. |-+
T Consensus 178 ~~~~~~g~e~~f~~~~E~~~-----~IkSg~W~~d---~fiYtT-----------~~~lkY--l~~Ge~~-~i~-~ld-- 232 (443)
T PF04053_consen 178 AAIPEEGVEDAFELIHEISE-----RIKSGCWVED---CFIYTT-----------SNHLKY--LVNGETG-IIA-HLD-- 232 (443)
T ss_dssp HHBTTTB-GGGEEEEEEE-S-------SEEEEETT---EEEEE------------TTEEEE--EETTEEE-EEE-E-S--
T ss_pred ccccccCchhceEEEEEecc-----eeEEEEEEcC---EEEEEc-----------CCeEEE--EEcCCcc-eEE-EcC--
Confidence 4444433112 2677888655 333443 346666 3455542 221 111
Q ss_pred CCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEc
Q 011970 415 KVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 472 (474)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklW 472 (474)
..++=+.+.|+.+.|+...+|+.|...
T Consensus 233 -------------------------------~~~yllgy~~~~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 233 -------------------------------KPLYLLGYLPKENRLYLIDRDGNVISY 259 (443)
T ss_dssp -------------------------------S--EEEEEETTTTEEEEE-TT--EEEE
T ss_pred -------------------------------CceEEEEEEccCCEEEEEECCCCEEEE
Confidence 167778999988899999999988654
No 322
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.52 E-value=0.00025 Score=78.24 Aligned_cols=141 Identities=13% Similarity=0.206 Sum_probs=103.5
Q ss_pred CCeEEEEeCCCcEEEEECCCCc---------------eEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC-CCcE
Q 011970 283 NEKLLVKQENENLQILDVRNAE---------------LMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGEL 345 (474)
Q Consensus 283 ~~~ll~~~~D~tIkIWDv~tg~---------------~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~-~G~l 345 (474)
.++++.++.||-+|+..+.+.. .-+++.||...|.-+.|..+.|.|-|+. +|-|-+|=+ .|.-
T Consensus 26 ~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW 105 (1189)
T KOG2041|consen 26 SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSW 105 (1189)
T ss_pred CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccH
Confidence 5789999999999999877532 1257899999999999999999998888 999999998 5764
Q ss_pred EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE--EEecCCCCCCCCccccCCC
Q 011970 346 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL--AKINATNCSPKVDDELGSS 423 (474)
Q Consensus 346 l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl--~tl~gH~~~~~~~~~~~~~ 423 (474)
...+...... ..|.++.+..||+.|+.... ||.|-+=.+ .|.-+ +.|+|..
T Consensus 106 ~EEMiNnRnK---SvV~SmsWn~dG~kIcIvYe-----------DGavIVGsv-dGNRIwgKeLkg~~------------ 158 (1189)
T KOG2041|consen 106 CEEMINNRNK---SVVVSMSWNLDGTKICIVYE-----------DGAVIVGSV-DGNRIWGKELKGQL------------ 158 (1189)
T ss_pred HHHHhhCcCc---cEEEEEEEcCCCcEEEEEEc-----------cCCEEEEee-ccceecchhcchhe------------
Confidence 3333333222 24889999999999998876 666543332 22221 1233322
Q ss_pred CCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 424 STGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
..-|.+|||.+.+.-+-.+|.++|+||
T Consensus 159 ------------------------l~hv~ws~D~~~~Lf~~ange~hlydn 185 (1189)
T KOG2041|consen 159 ------------------------LAHVLWSEDLEQALFKKANGETHLYDN 185 (1189)
T ss_pred ------------------------ccceeecccHHHHHhhhcCCcEEEecc
Confidence 234788999999888989999999987
No 323
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.43 E-value=0.099 Score=54.44 Aligned_cols=265 Identities=12% Similarity=0.127 Sum_probs=153.0
Q ss_pred cceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEec----------CCCcEEEeecCCCeEEEEE-
Q 011970 156 SSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA----------QDSIYKVFDLKNYTMLYSI- 224 (474)
Q Consensus 156 s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s----------~D~tiKlWdl~tg~~l~tl- 224 (474)
-++. ..+.+-|-..|++.. .-..+...-+..| |||+.+..++ ..-.|.+||.+|-+....+
T Consensus 13 ~~~~-~rv~viD~d~~k~lG------mi~~g~~~~~~~s-pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~ 84 (342)
T PF06433_consen 13 FHMT-SRVYVIDADSGKLLG------MIDTGFLGNVALS-PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE 84 (342)
T ss_dssp GGSS-EEEEEEETTTTEEEE------EEEEESSEEEEE--TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE
T ss_pred cccc-ceEEEEECCCCcEEE------EeecccCCceeEC-CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe
Confidence 3444 356677766666522 2112333357787 7999988765 2447999999998877744
Q ss_pred -cCC-c------EEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcE
Q 011970 225 -SDK-H------VQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENL 295 (474)
Q Consensus 225 -~~~-~------V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tI 295 (474)
+.. . .+..++|+ |..+++..- +--..|-+-|++.++.+.++.- ...+-+- |..+..+.+-+.||.+
T Consensus 85 iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~-TPa~SVtVVDl~~~kvv~ei~~--PGC~~iy--P~~~~~F~~lC~DGsl 159 (342)
T PF06433_consen 85 IPPKPRAQVVPYKNMFALSADGKFLYVQNF-TPATSVTVVDLAAKKVVGEIDT--PGCWLIY--PSGNRGFSMLCGDGSL 159 (342)
T ss_dssp ETTS-B--BS--GGGEEE-TTSSEEEEEEE-SSSEEEEEEETTTTEEEEEEEG--TSEEEEE--EEETTEEEEEETTSCE
T ss_pred cCCcchheecccccceEEccCCcEEEEEcc-CCCCeEEEEECCCCceeeeecC--CCEEEEE--ecCCCceEEEecCCce
Confidence 432 2 23478885 556655543 3345799999999999998873 2223332 2234566677899999
Q ss_pred EEEECC-CCceEEe----ccccCCceE-EEEEcC-CCcEEEEEcCCcEEEEeCCCcE---EEEec------cCCCCcCCC
Q 011970 296 QILDVR-NAELMEV----SRTEFMTPS-AFIFLY-ENQLFLTFRNRTVAVWNFRGEL---VTSFE------DHLLWHPDC 359 (474)
Q Consensus 296 kIWDv~-tg~~~~~----l~~h~~~v~-sv~Fsp-dg~llaS~sD~tIklWd~~G~l---l~tl~------gH~~~~~~~ 359 (474)
.-..+. .|+..+. +....+.+. .-+++. +++++-.+-+|.|.-=|+.|+- ...++ .-..|.|+-
T Consensus 160 ~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG 239 (342)
T PF06433_consen 160 LTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGG 239 (342)
T ss_dssp EEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-S
T ss_pred EEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcc
Confidence 888777 5665433 211111111 112232 3344433336766666665442 22222 113455433
Q ss_pred CeeEEEECCCCCEEEEEecCCCccccccC-CC--CeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccc
Q 011970 360 NTNNIYITSDQDLIISYCKAEPEDQWMEG-SA--GSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSY 436 (474)
Q Consensus 360 ~v~svafSpDg~~LaS~s~~~~~~~~~~s-~D--gtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (474)
. .-+++++..+.|..-=..+.+ ++ .| ..|-++|+.|+|.++.+.--.
T Consensus 240 ~-Q~~A~~~~~~rlyvLMh~g~~----gsHKdpgteVWv~D~~t~krv~Ri~l~~------------------------- 289 (342)
T PF06433_consen 240 W-QLIAYHAASGRLYVLMHQGGE----GSHKDPGTEVWVYDLKTHKRVARIPLEH------------------------- 289 (342)
T ss_dssp S-S-EEEETTTTEEEEEEEE--T----T-TTS-EEEEEEEETTTTEEEEEEEEEE-------------------------
T ss_pred e-eeeeeccccCeEEEEecCCCC----CCccCCceEEEEEECCCCeEEEEEeCCC-------------------------
Confidence 2 458888766555443221110 01 12 237777999999999997422
Q ss_pred ccccccccccCEEEEEEcCCCC-EEEEEc-CCCcEEEcc
Q 011970 437 IRSTVGEALEDITSLFYDEERN-EIYTGN-RHGLVHVWS 473 (474)
Q Consensus 437 ~~~~~~~~l~~V~slafSpDg~-~LaSgs-~DgtVklWd 473 (474)
.+.||+.|.|.+ .|+..+ .++++.++|
T Consensus 290 ----------~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 290 ----------PIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp ----------EESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred ----------ccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 577899999998 666654 588999987
No 324
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.41 E-value=0.027 Score=56.30 Aligned_cols=191 Identities=18% Similarity=0.224 Sum_probs=109.5
Q ss_pred EeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEE
Q 011970 123 FLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLT 202 (474)
Q Consensus 123 ~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~La 202 (474)
.|.|-.++ +-.|+|+|+.++|.++. . .. ..+ ++.=.+|+.....++-. ..-+..|++- -||++++
T Consensus 16 ~l~g~~~e-~SGLTy~pd~~tLfaV~--d-~~------~~i-~els~~G~vlr~i~l~g---~~D~EgI~y~-g~~~~vl 80 (248)
T PF06977_consen 16 PLPGILDE-LSGLTYNPDTGTLFAVQ--D-EP------GEI-YELSLDGKVLRRIPLDG---FGDYEGITYL-GNGRYVL 80 (248)
T ss_dssp E-TT--S--EEEEEEETTTTEEEEEE--T-TT------TEE-EEEETT--EEEEEE-SS----SSEEEEEE--STTEEEE
T ss_pred ECCCccCC-ccccEEcCCCCeEEEEE--C-CC------CEE-EEEcCCCCEEEEEeCCC---CCCceeEEEE-CCCEEEE
Confidence 34554445 99999999999999875 1 22 233 23336788766555333 3346689997 6888888
Q ss_pred EecCCCcEEEeecCCCe------EEEEEc------C-CcEEEEEEcC-CceEEEEecCCCCccEEEEecCC---CeEEEE
Q 011970 203 YSAQDSIYKVFDLKNYT------MLYSIS------D-KHVQEIKISP-GIMLLIFNRSSSHVPLKILSIED---GTVLKV 265 (474)
Q Consensus 203 S~s~D~tiKlWdl~tg~------~l~tl~------~-~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~t---G~~L~t 265 (474)
+.-.++++.+.++...+ ....+. + ..+-.|++.| ++.|.+.. ...|.+|+.+.. +..+..
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~ 157 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFV 157 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceee
Confidence 77779999999983211 112222 1 3489999998 67777663 356788877653 333332
Q ss_pred Ee--------ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe--ccc-------cCCceEEEEEcCCCcEE
Q 011970 266 FY--------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV--SRT-------EFMTPSAFIFLYENQLF 328 (474)
Q Consensus 266 l~--------~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~--l~~-------h~~~v~sv~Fspdg~ll 328 (474)
.. ....-..+++|.|..+..++-+++...|-++| .+|+.+.. |.. ....+..++|.++|++.
T Consensus 158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 21 12233578888876666666688999999999 77887653 332 22478899999999999
Q ss_pred EEEc
Q 011970 329 LTFR 332 (474)
Q Consensus 329 aS~s 332 (474)
+++-
T Consensus 237 IvsE 240 (248)
T PF06977_consen 237 IVSE 240 (248)
T ss_dssp EEET
T ss_pred EEcC
Confidence 8875
No 325
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.37 E-value=0.00045 Score=44.17 Aligned_cols=38 Identities=13% Similarity=0.329 Sum_probs=33.6
Q ss_pred CceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEe
Q 011970 303 AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 340 (474)
Q Consensus 303 g~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd 340 (474)
++++..+..|...+.++.|.|+++++++++ |++|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677778889999999999999999998 99999996
No 326
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.29 E-value=0.23 Score=52.64 Aligned_cols=258 Identities=16% Similarity=0.193 Sum_probs=118.1
Q ss_pred ccEEEEeeCCCeEEee--eccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCC
Q 011970 98 RDIVFALAHSGVCAAF--SRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 175 (474)
Q Consensus 98 ~~~las~s~dgtiklW--~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~ 175 (474)
..+|+++..||.-.|| |++|++-. .|.-+..+.....+.+|++..|+-+. ++ +++.-=++.+++.
T Consensus 48 ~kllF~s~~dg~~nly~lDL~t~~i~-QLTdg~g~~~~g~~~s~~~~~~~Yv~----~~------~~l~~vdL~T~e~-- 114 (386)
T PF14583_consen 48 RKLLFASDFDGNRNLYLLDLATGEIT-QLTDGPGDNTFGGFLSPDDRALYYVK----NG------RSLRRVDLDTLEE-- 114 (386)
T ss_dssp -EEEEEE-TTSS-EEEEEETTT-EEE-E---SS-B-TTT-EE-TTSSEEEEEE----TT------TEEEEEETTT--E--
T ss_pred CEEEEEeccCCCcceEEEEcccCEEE-ECccCCCCCccceEEecCCCeEEEEE----CC------CeEEEEECCcCcE--
Confidence 4778888888877776 46655544 45433323344677788888776432 11 2222234444442
Q ss_pred ccceeeeccccCceEEEEe-CCCCeEEEEecC----------------------CCcEEEeecCCCeEEEEEc-CCcEEE
Q 011970 176 GFALFESESLKWPGFVEFD-DVNGKVLTYSAQ----------------------DSIYKVFDLKNYTMLYSIS-DKHVQE 231 (474)
Q Consensus 176 ~~~lf~~~~~~~~~~V~Fs-~~nGk~LaS~s~----------------------D~tiKlWdl~tg~~l~tl~-~~~V~~ 231 (474)
..+++- .-.|.+...+. +.|+..++-.-. ...|.-=|++||+.--.+. ..++--
T Consensus 115 -~~vy~~-p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH 192 (386)
T PF14583_consen 115 -RVVYEV-PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGH 192 (386)
T ss_dssp -EEEEE---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEE
T ss_pred -EEEEEC-CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccC
Confidence 123332 12344333442 245665543221 2234444788888644444 468889
Q ss_pred EEEcC-CceEEEE-ecCCCCc-cEEEEecC-CCeEEEEEeecC-cceeEEEEEecCCCeEEE-E----eCCCcEEEEECC
Q 011970 232 IKISP-GIMLLIF-NRSSSHV-PLKILSIE-DGTVLKVFYHLL-HRNKKVDFIEQFNEKLLV-K----QENENLQILDVR 301 (474)
Q Consensus 232 vafSp-g~~la~~-s~~s~D~-tIkLWdi~-tG~~L~tl~~h~-~~v~~V~F~~~~~~~ll~-~----~~D~tIkIWDv~ 301 (474)
+.||| +..++.+ ..+.-|. +-|||-+. +|.-.+.+..|. ..+-.=.|-.++|.+|.- + +.+..|.=.|+.
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 99998 6666666 3332232 34788554 455555443221 222223344577877665 2 246677788999
Q ss_pred CCceEEeccccCCceEEEEEcCCCcEEEEEc-CC----------------cEEEEeCC-CcEEEEeccC----------C
Q 011970 302 NAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR----------------TVAVWNFR-GELVTSFEDH----------L 353 (474)
Q Consensus 302 tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~----------------tIklWd~~-G~ll~tl~gH----------~ 353 (474)
+++-.... +..+.+-+.-++||+|++--. |. -|.|++++ ++. ..|.-| .
T Consensus 273 t~~~~~~~--~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~-~~l~~h~~sw~v~~~~~ 349 (386)
T PF14583_consen 273 TGERRRLM--EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF-RKLARHDTSWKVLDGDR 349 (386)
T ss_dssp T--EEEEE--EE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEE-EEEEE-------BTTBS
T ss_pred CCCceEEE--eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCce-eeeeeccCcceeecCCC
Confidence 98764432 112333444579999998644 53 45567775 443 223333 2
Q ss_pred C-CcCCCCeeEEEECCCCCEEEEEec
Q 011970 354 L-WHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 354 ~-~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
. -| ..+.|||||++++=.|.
T Consensus 350 q~~h-----Php~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 350 QVTH-----PHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp STT---------EE-TTSSEEEEEE-
T ss_pred ccCC-----CCCccCCCCCEEEEECC
Confidence 2 12 35889999999997764
No 327
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.27 E-value=0.22 Score=48.89 Aligned_cols=242 Identities=16% Similarity=0.204 Sum_probs=127.4
Q ss_pred ccEEEEeeCCCeEEeeeccc-cceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCc
Q 011970 98 RDIVFALAHSGVCAAFSRET-NRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~t-g~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~ 176 (474)
++.|+.|.++| +-+++... .+....+.. ..|..+..-|+=+.|+.-+ + +++.+.++..=.....
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~---~~I~ql~vl~~~~~llvLs----d-------~~l~~~~L~~l~~~~~ 71 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILKL---SSITQLSVLPELNLLLVLS----D-------GQLYVYDLDSLEPVST 71 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEeec---ceEEEEEEecccCEEEEEc----C-------CccEEEEchhhccccc
Confidence 89999999999 77888733 333333332 2399999999888777643 2 3555555432222110
Q ss_pred c-c-ee--------eeccccCceEEE-EeCC-CCeEEEEecCCCcEEEeecCCC-----eEEEEEc-CCcEEEEEEcCCc
Q 011970 177 F-A-LF--------ESESLKWPGFVE-FDDV-NGKVLTYSAQDSIYKVFDLKNY-----TMLYSIS-DKHVQEIKISPGI 238 (474)
Q Consensus 177 ~-~-lf--------~~~~~~~~~~V~-Fs~~-nGk~LaS~s~D~tiKlWdl~tg-----~~l~tl~-~~~V~~vafSpg~ 238 (474)
. + .+ .....+.+.+.+ -..+ ++..|+ .+..++|.||..... +.++.+. .+.+.+++|.++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~ 150 (275)
T PF00780_consen 72 SAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNK 150 (275)
T ss_pred cccccccccccccccccccCCeeEEeeccccccceEEE-EEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCE
Confidence 0 0 00 001122222222 0012 344444 445668999887643 3445554 4678888888444
Q ss_pred eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEE
Q 011970 239 MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSA 318 (474)
Q Consensus 239 ~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~s 318 (474)
++.+.. ....+-|+.+|+....+...... ..|. ...... .+..
T Consensus 151 -i~v~~~----~~f~~idl~~~~~~~l~~~~~~~---~~~~----------------------------~~~~~~-~~~~ 193 (275)
T PF00780_consen 151 -ICVGTS----KGFYLIDLNTGSPSELLDPSDSS---SSFK----------------------------SRNSSS-KPLG 193 (275)
T ss_pred -EEEEeC----CceEEEecCCCCceEEeCccCCc---chhh----------------------------hcccCC-CceE
Confidence 343322 34667777766553333210000 0000 000111 1222
Q ss_pred EEEcCCCcEEEEEcCCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 319 FIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 319 v~Fspdg~llaS~sD~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
+.-.+++.+|++.. ..--.=|.+|+..+ ++...|.. ...++++. ..+|+..+ ++.|.||++
T Consensus 194 ~~~~~~~e~Ll~~~-~~g~fv~~~G~~~r--~~~i~W~~--~p~~~~~~--~pyli~~~------------~~~iEV~~~ 254 (275)
T PF00780_consen 194 IFQLSDNEFLLCYD-NIGVFVNKNGEPSR--KSTIQWSS--APQSVAYS--SPYLIAFS------------SNSIEVRSL 254 (275)
T ss_pred EEEeCCceEEEEec-ceEEEEcCCCCcCc--ccEEEcCC--chhEEEEE--CCEEEEEC------------CCEEEEEEC
Confidence 22234456666543 33335566787655 33344532 23456553 34776554 577999999
Q ss_pred CCCeEEEEecCCC
Q 011970 399 LTGKCLAKINATN 411 (474)
Q Consensus 399 ~tG~cl~tl~gH~ 411 (474)
.+|++++++.+.+
T Consensus 255 ~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 255 ETGELVQTIPLPN 267 (275)
T ss_pred cCCcEEEEEECCC
Confidence 9999999998765
No 328
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.26 E-value=0.019 Score=64.54 Aligned_cols=356 Identities=15% Similarity=0.161 Sum_probs=197.2
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeC---C-CEEEEEEeecCCCccceeeeEEEEeEeccCCC
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN---N-DSLITVSVYASDNFSSLKCRSTKIEYIRRGKP 173 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspd---g-~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~ 173 (474)
.-+||++...|.|.+||..++--++-|+. |...|..++|=|. . +.|+.. .+- .++-+|+.-+|+.
T Consensus 79 ~lliAsaD~~GrIil~d~~~~s~~~~l~~-~~~~~qdl~W~~~rd~Srd~LlaI---h~s-------s~lvLwntdtG~k 147 (1062)
T KOG1912|consen 79 QLLIASADISGRIILVDFVLASVINWLSH-SNDSVQDLCWVPARDDSRDVLLAI---HGS-------STLVLWNTDTGEK 147 (1062)
T ss_pred ceeEEeccccCcEEEEEehhhhhhhhhcC-CCcchhheeeeeccCcchheeEEe---cCC-------cEEEEEEccCCce
Confidence 56899999999999999999999999995 7788999998554 2 233321 122 3677888788885
Q ss_pred CCccceeeeccccCceE-EEEeCCC----------CeEEEE-----ecCCCcEEEeecCCC--eEEE----EE-----c-
Q 011970 174 DSGFALFESESLKWPGF-VEFDDVN----------GKVLTY-----SAQDSIYKVFDLKNY--TMLY----SI-----S- 225 (474)
Q Consensus 174 ~~~~~lf~~~~~~~~~~-V~Fs~~n----------Gk~LaS-----~s~D~tiKlWdl~tg--~~l~----tl-----~- 225 (474)
+|....-.-+-+ +.|+|-| |.+|.+ .-.|+-.|.+.+++- .+.+ +. .
T Consensus 148 -----~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts 222 (1062)
T KOG1912|consen 148 -----FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTS 222 (1062)
T ss_pred -----eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccC
Confidence 444321111112 3444333 333322 113555566655432 1000 00 0
Q ss_pred --CC-----cEEEEEEcC---CceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCC-eEEEEeCCCc
Q 011970 226 --DK-----HVQEIKISP---GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNE-KLLVKQENEN 294 (474)
Q Consensus 226 --~~-----~V~~vafSp---g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~-~ll~~~~D~t 294 (474)
.. .-.-+||+| +.+++++- ..+-|.|++--+||.+..-..+.++=|+..|.+.. -|.+.-.||-
T Consensus 223 ~~~sa~fity~a~faf~p~~rn~lfi~~p-----rellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ 297 (1062)
T KOG1912|consen 223 TPASAYFITYCAQFAFSPHWRNILFITFP-----RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGR 297 (1062)
T ss_pred CCcchhHHHHHHhhhcChhhhceEEEEec-----cceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCe
Confidence 00 112378888 77788773 45999999998999887754555677777754443 4444569999
Q ss_pred EEEEECCC----------------CceEEecc-ccCCceEEEEEcCCCcEEEEE--cCCcEEEEeCC-CcEEEEec----
Q 011970 295 LQILDVRN----------------AELMEVSR-TEFMTPSAFIFLYENQLFLTF--RNRTVAVWNFR-GELVTSFE---- 350 (474)
Q Consensus 295 IkIWDv~t----------------g~~~~~l~-~h~~~v~sv~Fspdg~llaS~--sD~tIklWd~~-G~ll~tl~---- 350 (474)
+-||=-+. |+..+... -+...+..-+--|-.+-.++- +++...+|++. |+.-....
T Consensus 298 ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~i 377 (1062)
T KOG1912|consen 298 LTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSI 377 (1062)
T ss_pred EEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccc
Confidence 99996544 22222211 122233333333543333322 47777789884 54311000
Q ss_pred cCCCCcCCCC-------eeEEEECCCC---------------CEEEEEecCCCccc-------cccCCCCeEEEEeCCCC
Q 011970 351 DHLLWHPDCN-------TNNIYITSDQ---------------DLIISYCKAEPEDQ-------WMEGSAGSINVSSILTG 401 (474)
Q Consensus 351 gH~~~~~~~~-------v~svafSpDg---------------~~LaS~s~~~~~~~-------~~~s~DgtIklWdi~tG 401 (474)
.-......|. ..=+.+|.|| ++-...+.+..+.. +.+.+.|||-+.|+.|+
T Consensus 378 el~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~ 457 (1062)
T KOG1912|consen 378 ELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTN 457 (1062)
T ss_pred cccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecch
Confidence 0000000000 0112234444 00000010000000 33456899999999999
Q ss_pred eEEEEecCCCCCCCCc-----------cccCCCC-CCcccccccccccccccccccc--------CEEEEEEcCCCCEEE
Q 011970 402 KCLAKINATNCSPKVD-----------DELGSSS-TGKSKKLNKSSYIRSTVGEALE--------DITSLFYDEERNEIY 461 (474)
Q Consensus 402 ~cl~tl~gH~~~~~~~-----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~--------~V~slafSpDg~~La 461 (474)
..-+.+..|+...++- .++...+ +|-.-+.--+.+++++++++.. .|+.+--|.-|++|+
T Consensus 458 ~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLa 537 (1062)
T KOG1912|consen 458 AVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLA 537 (1062)
T ss_pred hhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEE
Confidence 9888888888633321 0111111 1111122224556666664433 899999999999999
Q ss_pred EEcCCCcEEEccC
Q 011970 462 TGNRHGLVHVWSN 474 (474)
Q Consensus 462 Sgs~DgtVklWd~ 474 (474)
-.=+|.-+.+||.
T Consensus 538 i~Fr~~plEiwd~ 550 (1062)
T KOG1912|consen 538 ILFRREPLEIWDL 550 (1062)
T ss_pred EEecccchHHHhh
Confidence 9999999999984
No 329
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.26 E-value=0.16 Score=52.18 Aligned_cols=188 Identities=12% Similarity=0.151 Sum_probs=107.6
Q ss_pred EEEEecCCCcEEEeecCCCeE-EEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEe----ec-Ccce
Q 011970 200 VLTYSAQDSIYKVFDLKNYTM-LYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY----HL-LHRN 273 (474)
Q Consensus 200 ~LaS~s~D~tiKlWdl~tg~~-l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~----~h-~~~v 273 (474)
++-+.-..+.|.-||..+|+. .+..+...-....+.+++.|+++ +.-+.++++++|.....+. +. ..+-
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~-----~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ 113 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIAC-----EHGVRLLDPDTGGKITLLAEPEDGLPLNRP 113 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEE-----ccccEEEeccCCceeEEeccccCCCCcCCC
Confidence 444444566777777766643 22333333344566678888776 3458888888776633332 11 1222
Q ss_pred eEEEEEecCCCeEEEE--e-----C---CCcEEEEECC-CCceEEeccccCCceEEEEEcCCCcEEEEE-c-CCcEEEEe
Q 011970 274 KKVDFIEQFNEKLLVK--Q-----E---NENLQILDVR-NAELMEVSRTEFMTPSAFIFLYENQLFLTF-R-NRTVAVWN 340 (474)
Q Consensus 274 ~~V~F~~~~~~~ll~~--~-----~---D~tIkIWDv~-tg~~~~~l~~h~~~v~sv~Fspdg~llaS~-s-D~tIklWd 340 (474)
+.+... ++| .+.++ + . -.+=.||=+. .|..++...+|...+..++||||++.|--+ + .+.|.-++
T Consensus 114 ND~~v~-pdG-~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~ 191 (307)
T COG3386 114 NDGVVD-PDG-RIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYD 191 (307)
T ss_pred CceeEc-CCC-CEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEe
Confidence 333332 333 34433 2 1 1122455555 677778878888889999999999766555 4 67777776
Q ss_pred CC---CcEE----EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC-CeEEEEeCCCCeEEEEecCC
Q 011970 341 FR---GELV----TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA-GSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 341 ~~---G~ll----~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~D-gtIklWdi~tG~cl~tl~gH 410 (474)
+. |..- .-+.++..--| -.++.-.||.+-+++-. + +.|..|+-. |+.+..++-.
T Consensus 192 ~d~~~g~~~~~~~~~~~~~~~G~P----DG~~vDadG~lw~~a~~-----------~g~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 192 LDPATGPIGGRRGFVDFDEEPGLP----DGMAVDADGNLWVAAVW-----------GGGRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred cCcccCccCCcceEEEccCCCCCC----CceEEeCCCCEEEeccc-----------CCceEEEECCC-CcEEEEEECC
Confidence 63 3211 11111111111 35666777887764432 3 388899965 9998888765
No 330
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.25 E-value=0.018 Score=61.72 Aligned_cols=178 Identities=11% Similarity=0.115 Sum_probs=112.7
Q ss_pred EEEEeCCCCeEEEEecC---C-CcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCC-CCccEEEEecCCCeEE
Q 011970 190 FVEFDDVNGKVLTYSAQ---D-SIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSS-SHVPLKILSIEDGTVL 263 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~---D-~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s-~D~tIkLWdi~tG~~L 263 (474)
+-+|+ |+|+.|++-+. . ..+.++|+++|+--..+. ...--.-+|||++..++++... +...|.+-|+.+++ +
T Consensus 197 ~p~ws-~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~ 274 (425)
T COG0823 197 TPAWS-PDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-L 274 (425)
T ss_pred ccccC-cCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-c
Confidence 45777 79999888752 2 358899999988665554 3455568899855544454433 22357888987776 5
Q ss_pred EEEeecCcceeEEEEEecCCCeEEEEe-CCCcEEE--EECCCCceEEe-ccccCCceEEEEEcCCCcEEEEEc--CCc--
Q 011970 264 KVFYHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQI--LDVRNAELMEV-SRTEFMTPSAFIFLYENQLFLTFR--NRT-- 335 (474)
Q Consensus 264 ~tl~~h~~~v~~V~F~~~~~~~ll~~~-~D~tIkI--WDv~tg~~~~~-l~~h~~~v~sv~Fspdg~llaS~s--D~t-- 335 (474)
..|..-.+......|+ |+|.+++..+ ..|.-+| .|+..+...+. +.+-... .-.+||||++++--+ ++.
T Consensus 275 ~~Lt~~~gi~~~Ps~s-pdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~ 351 (425)
T COG0823 275 PRLTNGFGINTSPSWS-PDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWD 351 (425)
T ss_pred eecccCCccccCccCC-CCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc--CccCCCCCCEEEEEeccCCcee
Confidence 5566544555566766 7899998865 4554455 47777665443 3332222 345799999998776 454
Q ss_pred EEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 336 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 336 IklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
|-+-|.. |.-++.|..-.. ...-.+.|||+.|...+.
T Consensus 352 i~~~~~~~~~~~~~lt~~~~------~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 352 IDKNDLASGGKIRILTSTYL------NESPSWAPNGRMIMFSSG 389 (425)
T ss_pred eEEeccCCCCcEEEcccccc------CCCCCcCCCCceEEEecc
Confidence 5566663 443555543222 235568899999987654
No 331
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.25 E-value=0.0038 Score=70.88 Aligned_cols=176 Identities=14% Similarity=0.141 Sum_probs=116.5
Q ss_pred CCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCC
Q 011970 283 NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCN 360 (474)
Q Consensus 283 ~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~ 360 (474)
++.++.|+.-+.+--.|+++.+..++..-. ..-..+.-.++++|.+|. .|+|-|-|.+ -+.+++|..|++.+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~--a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si---- 220 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVS--ASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI---- 220 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeeeeecc--CCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccce----
Confidence 467778887777777898888877663322 222455678999999999 9999999995 88999999999863
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCC------CCCCc----cccCCCC-C-C--
Q 011970 361 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC------SPKVD----DELGSSS-T-G-- 426 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~------~~~~~----~~~~~~~-~-~-- 426 (474)
..|.-.|++|+|++.|.-.-. ---|.-||+||+..=+.|.-+.=|-+ +|... .++.++. + +
T Consensus 221 ---SDfDv~GNlLitCG~S~R~~~--l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~ 295 (1118)
T KOG1275|consen 221 ---SDFDVQGNLLITCGYSMRRYN--LAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDT 295 (1118)
T ss_pred ---eeeeccCCeEEEeeccccccc--ccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccc
Confidence 457779999999987422111 11378899999977666655544443 22211 2222221 0 0
Q ss_pred --ccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 427 --KSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 427 --~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
-+++...+- |.... -..+.++.+|+.|+.||-|..+|-|++|.
T Consensus 296 ~~lsNP~~~~~-~v~p~---~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 296 ATLSNPPAGVK-MVNPN---GSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccCCCcccee-EEccC---CCcceeEEecCCCceEEEecccCcEeeec
Confidence 001101100 00000 11489999999999999999999999994
No 332
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.24 E-value=0.038 Score=58.80 Aligned_cols=51 Identities=22% Similarity=0.344 Sum_probs=41.8
Q ss_pred cEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCce
Q 011970 251 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAEL 305 (474)
Q Consensus 251 tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~ 305 (474)
.|+|++. .|++|.++.-..+++-.+.|.. ++.|++=..||+++++|+. |+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~-G~~ 112 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLF-GEF 112 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCC-Cce
Confidence 4889985 7899988875457888999864 7899998999999999987 444
No 333
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.24 E-value=0.14 Score=55.58 Aligned_cols=226 Identities=12% Similarity=0.125 Sum_probs=126.6
Q ss_pred ccEEEEee---------CCCeEEeeeccccceeeEeecCCCc-------------------eEE-EEEEeeCCCEEEEEE
Q 011970 98 RDIVFALA---------HSGVCAAFSRETNRRICFLNVSPDE-------------------VIR-SLFYNKNNDSLITVS 148 (474)
Q Consensus 98 ~~~las~s---------~dgtiklW~~~tg~~l~~l~g~~~~-------------------~i~-sv~fspdg~~Lis~S 148 (474)
+++++.++ .+|.+...|.+||+.+=..+..+.. .|+ +.++.+.+.+++.++
T Consensus 156 ~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~ 235 (488)
T cd00216 156 KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGT 235 (488)
T ss_pred CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEEC
Confidence 56666665 3688999999999987765542111 122 456666666666654
Q ss_pred eecCCCc--------cceeeeEEEEeEeccCCCCCccceeeeccc---cCc----eEEEEe---CCCCe---EEEEecCC
Q 011970 149 VYASDNF--------SSLKCRSTKIEYIRRGKPDSGFALFESESL---KWP----GFVEFD---DVNGK---VLTYSAQD 207 (474)
Q Consensus 149 ~~~s~d~--------s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~---~~~----~~V~Fs---~~nGk---~LaS~s~D 207 (474)
.++.-+. ..+-...+--.|+.+|+. +|..... .|. ....+. +.+|+ ++..++.+
T Consensus 236 ~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~-----~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~ 310 (488)
T cd00216 236 GNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV-----KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN 310 (488)
T ss_pred CCCCCCccCCccCCCCCCceeeEEEEcCCCCCE-----EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCC
Confidence 3321100 001112344456678885 4443210 010 011111 12454 56667789
Q ss_pred CcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEec--------------CCCCccEEEEecCCCeEEEEEeecCc--
Q 011970 208 SIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNR--------------SSSHVPLKILSIEDGTVLKVFYHLLH-- 271 (474)
Q Consensus 208 ~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~--------------~s~D~tIkLWdi~tG~~L~tl~~h~~-- 271 (474)
+.+...|++||+.+...... ...++.+|+...+.... ...++.|.-.|+.+|+.+-+......
T Consensus 311 G~l~ald~~tG~~~W~~~~~-~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~ 389 (488)
T cd00216 311 GFFYVLDRTTGKLISARPEV-EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRD 389 (488)
T ss_pred ceEEEEECCCCcEeeEeEee-ccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccc
Confidence 99999999999988765421 12344556433332110 11245677789999998877763211
Q ss_pred ------ce--eEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc-ccCCceEEEEEcCCCcEEEEEc
Q 011970 272 ------RN--KKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR-TEFMTPSAFIFLYENQLFLTFR 332 (474)
Q Consensus 272 ------~v--~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~-~h~~~v~sv~Fspdg~llaS~s 332 (474)
.. ..+. ..++.+.+++.|+.|..+|..+|+.+-..+ +......-++|..+|++.+..-
T Consensus 390 ~~~~g~~~~~~~~~---~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~~ 456 (488)
T cd00216 390 SWNIGFPHWGGSLA---TAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGVM 456 (488)
T ss_pred ccccCCcccCcceE---ecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEEE
Confidence 01 1122 236788888899999999999999885433 2222233355666777766543
No 334
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0016 Score=68.92 Aligned_cols=200 Identities=11% Similarity=0.132 Sum_probs=129.2
Q ss_pred CCeEEEEecCCCcEEEeecCC--Ce-EEEEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEe--ec
Q 011970 197 NGKVLTYSAQDSIYKVFDLKN--YT-MLYSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY--HL 269 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~t--g~-~l~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~--~h 269 (474)
-.+++.++|.||.+|.|--.- |. .+.-+.. ..|.+++-|-+++|..+- +.-|+.+|+.|+++-....-++ ..
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv-~d~Dhs~KvfDvEn~DminmiKL~~l 97 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSV-EDPDHSVKVFDVENFDMINMIKLVDL 97 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeec-cCcccceeEEEeeccchhhhcccccC
Confidence 567899999999999998432 22 1122222 346777778677666542 2238899999998754432221 11
Q ss_pred CcceeEEEEEecCCC---eEEEEe-CCCcEEEEECCCCceE--EeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC
Q 011970 270 LHRNKKVDFIEQFNE---KLLVKQ-ENENLQILDVRNAELM--EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 270 ~~~v~~V~F~~~~~~---~ll~~~-~D~tIkIWDv~tg~~~--~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~ 342 (474)
-.. +.+.-..|. .++++. .++-|-+.|-....|. ..-.-|+.+|..+-++|-+..++|.. .|.|+-|..+
T Consensus 98 Pg~---a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e 174 (558)
T KOG0882|consen 98 PGF---AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAE 174 (558)
T ss_pred CCc---eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCC
Confidence 111 111111121 344443 7899999997766543 22344999999998999999999988 9999999987
Q ss_pred Cc-------EEEEeccCCC--CcCCC--CeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 343 GE-------LVTSFEDHLL--WHPDC--NTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 343 G~-------ll~tl~gH~~--~~~~~--~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
|. +...++-.+. -.+-| +-.++.|+|+|..|+.-.. |..||+.+..||+.++.|..-.
T Consensus 175 ~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~-----------DrkVR~F~~KtGklvqeiDE~~ 243 (558)
T KOG0882|consen 175 GPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP-----------DRKVRGFVFKTGKLVQEIDEVL 243 (558)
T ss_pred CcccCccccccccccccchhhcccccccCccceEEccccCcccccCc-----------ccEEEEEEeccchhhhhhhccc
Confidence 62 1111211110 00001 1257899999999998654 9999999999999999886543
No 335
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.13 E-value=0.0016 Score=70.85 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=55.7
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccccccc
Q 011970 361 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRST 440 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (474)
|.+++++|+.+.++-||. ||+|.|||..++ +.++.-+.-
T Consensus 262 v~~ca~sp~E~kLvlGC~-----------DgSiiLyD~~~~--~t~~~ka~~---------------------------- 300 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCE-----------DGSIILYDTTRG--VTLLAKAEF---------------------------- 300 (545)
T ss_pred ceEEecCcccceEEEEec-----------CCeEEEEEcCCC--eeeeeeecc----------------------------
Confidence 689999999999999998 999999997655 333322221
Q ss_pred ccccccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 441 VGEALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 441 ~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
..+-++|+|+|.+++.||.-|.+.+||+
T Consensus 301 ------~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 301 ------IPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred ------cceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 4567999999999999999999999995
No 336
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.98 E-value=0.013 Score=58.69 Aligned_cols=100 Identities=15% Similarity=0.115 Sum_probs=70.7
Q ss_pred EEEEecCCCcEEEeecCCCe-EEEEE-cCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEE-EEeecCcceeE
Q 011970 200 VLTYSAQDSIYKVFDLKNYT-MLYSI-SDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLK-VFYHLLHRNKK 275 (474)
Q Consensus 200 ~LaS~s~D~tiKlWdl~tg~-~l~tl-~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~-tl~~h~~~v~~ 275 (474)
.+.--+.|. .+.|++..-+ ++... ..+.|.+++-+| ++-++..+ ++|+.+-|||.+.+.... .|.-|...++.
T Consensus 152 ~g~~n~~d~-~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cg--t~dg~~~l~d~rn~~~p~S~l~ahk~~i~e 228 (319)
T KOG4714|consen 152 CGNWNAQDN-FYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCG--TDDGIVGLWDARNVAMPVSLLKAHKAEIWE 228 (319)
T ss_pred cceEeeccc-eeeecccccccccccccccccchhhhCCcccccEEEEe--cCCCeEEEEEcccccchHHHHHHhhhhhhh
Confidence 333344553 6688775433 22222 235699999887 44444442 568899999998875432 34568889999
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEECCC
Q 011970 276 VDFIEQFNEKLLVKQENENLQILDVRN 302 (474)
Q Consensus 276 V~F~~~~~~~ll~~~~D~tIkIWDv~t 302 (474)
|-|.|..+++|+++++||.+--||..+
T Consensus 229 V~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 229 VHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999999999999999999999543
No 337
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.98 E-value=0.51 Score=47.77 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=69.7
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCcc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGF 177 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~ 177 (474)
..+++.||+++.++.-|.++|+.+=.-- -...|.+-+.= =|+.++.+- .. ..+.+-+..+|.....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i--lg~RiE~sa~v-vgdfVV~GC----y~------g~lYfl~~~tGs~~w~- 88 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI--LGVRIECSAIV-VGDFVVLGC----YS------GGLYFLCVKTGSQIWN- 88 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh--hCceeeeeeEE-ECCEEEEEE----cc------CcEEEEEecchhheee-
Confidence 6889999999999999999998764211 11334443332 244443321 11 2333445578854332
Q ss_pred ceeee-ccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc
Q 011970 178 ALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 225 (474)
Q Consensus 178 ~lf~~-~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~ 225 (474)
|.. +.++-...++ ++|..+-.++.|++...=|.+++.|+|..+
T Consensus 89 --f~~~~~vk~~a~~d---~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 89 --FVILETVKVRAQCD---FDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred --eeehhhhccceEEc---CCCceEEEecCCCcEEEecccccceEEecc
Confidence 333 2344322344 468899999999999999999999999876
No 338
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.023 Score=63.95 Aligned_cols=139 Identities=19% Similarity=0.186 Sum_probs=94.9
Q ss_pred eccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeC-----CCEEEEEEeecCCCccceeeeEEEEeEe-cc
Q 011970 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKN-----NDSLITVSVYASDNFSSLKCRSTKIEYI-RR 170 (474)
Q Consensus 97 s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspd-----g~~Lis~S~~~s~d~s~Lk~~~~~iw~i-~~ 170 (474)
.|+++||+|.||++-+-.+-|++..++++. + -.+.+|+++|| -+..+++ +.. .+-+..- --
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~-rpiksial~Pd~~~~~sk~fv~G----G~a-------glvL~er~wl 148 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDF-K-RPIKSIALHPDFSRQQSKQFVSG----GMA-------GLVLSERNWL 148 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEec-C-CcceeEEeccchhhhhhhheeec----Ccc-------eEEEehhhhh
Confidence 399999999999999999999999999986 4 78999999999 2234442 222 1212110 01
Q ss_pred CCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcE------EEEEEcCCceEEE
Q 011970 171 GKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHV------QEIKISPGIMLLI 242 (474)
Q Consensus 171 G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V------~~vafSpg~~la~ 242 (474)
|..+. ..+. +.-+.|.++.+ .|.++|=++.+| |||+|+.+.+-+..++- ..+ ..+.|.|...|++
T Consensus 149 gnk~~-v~l~--~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI 221 (846)
T KOG2066|consen 149 GNKDS-VVLS--EGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI 221 (846)
T ss_pred cCccc-eeee--cCccceEEEEe---cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE
Confidence 11111 1122 22455667887 589999998888 99999999887777751 222 2477778888888
Q ss_pred EecCCCCccEEEEecCC
Q 011970 243 FNRSSSHVPLKILSIED 259 (474)
Q Consensus 243 ~s~~s~D~tIkLWdi~t 259 (474)
+= + -+|+|..|+.
T Consensus 222 GW-~---d~v~i~~I~~ 234 (846)
T KOG2066|consen 222 GW-G---DSVKICSIKK 234 (846)
T ss_pred ec-C---CeEEEEEEec
Confidence 72 2 3799998874
No 339
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.94 E-value=0.08 Score=59.71 Aligned_cols=233 Identities=13% Similarity=0.163 Sum_probs=147.2
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCC-----------ceEEEEecCCCCccEEEEe
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKISPG-----------IMLLIFNRSSSHVPLKILS 256 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafSpg-----------~~la~~s~~s~D~tIkLWd 256 (474)
++.++ |.| ++|+|+.. .|-|=|.-+++.+.++. ...|..|++.|- ..+++++ +.-.+.|-|||
T Consensus 20 A~Dw~-~~G-LiAygshs-lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAs-aD~~GrIil~d 95 (1062)
T KOG1912|consen 20 AADWS-PSG-LIAYGSHS-LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIAS-ADISGRIILVD 95 (1062)
T ss_pred ccccC-ccc-eEEEecCc-eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEe-ccccCcEEEEE
Confidence 56776 566 89999854 57888999999998885 567999998851 1222222 23356899999
Q ss_pred cCCCeEEEEEeecCcceeEEEEEecCC---CeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcC-CCcEEEE-E
Q 011970 257 IEDGTVLKVFYHLLHRNKKVDFIEQFN---EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLY-ENQLFLT-F 331 (474)
Q Consensus 257 i~tG~~L~tl~~h~~~v~~V~F~~~~~---~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fsp-dg~llaS-~ 331 (474)
...+..+..|++|...+..+.|.+..+ ..|++=..-.+|-|||..+|+.+-....-....+.|.|-| |.+.|.- +
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence 999999999999999998888864322 3455556778999999999998754322222344455554 3333322 2
Q ss_pred cCCcEEEEeC--------CCcEEEEeccCCCC------------cCCCCe--------eEEEECCCC--CEEEEEecCCC
Q 011970 332 RNRTVAVWNF--------RGELVTSFEDHLLW------------HPDCNT--------NNIYITSDQ--DLIISYCKAEP 381 (474)
Q Consensus 332 sD~tIklWd~--------~G~ll~tl~gH~~~------------~~~~~v--------~svafSpDg--~~LaS~s~~~~ 381 (474)
+.|.+-+-++ -|+..+.-.+|.+. +..|+. -..+|+|.- -+++.+
T Consensus 176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~----- 250 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF----- 250 (1062)
T ss_pred cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe-----
Confidence 3555555542 24555555555541 011110 123456643 333433
Q ss_pred ccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCC--CE
Q 011970 382 EDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEER--NE 459 (474)
Q Consensus 382 ~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg--~~ 459 (474)
-.-+-|.|++=.+|+.++.--.+ .+-=|..-||+ ..
T Consensus 251 --------prellv~dle~~~~l~vvpier~----------------------------------~akfv~vlP~~~rd~ 288 (1062)
T KOG1912|consen 251 --------PRELLVFDLEYECCLAVVPIERG----------------------------------GAKFVDVLPDPRRDA 288 (1062)
T ss_pred --------ccceEEEcchhhceeEEEEeccC----------------------------------CcceeEeccCCCcce
Confidence 45688999988888887743322 22224444554 56
Q ss_pred EEEEcCCCcEEEcc
Q 011970 460 IYTGNRHGLVHVWS 473 (474)
Q Consensus 460 LaSgs~DgtVklWd 473 (474)
|+.+=.||-+.+|-
T Consensus 289 LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 289 LFCLHSNGRLTIRV 302 (1062)
T ss_pred EEEEecCCeEEEEE
Confidence 99999999988883
No 340
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.88 E-value=0.1 Score=58.43 Aligned_cols=256 Identities=11% Similarity=0.067 Sum_probs=150.2
Q ss_pred ccEEEEeeCCCeEEeeeccccce---------------eeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeE
Q 011970 98 RDIVFALAHSGVCAAFSRETNRR---------------ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRS 162 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~---------------l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~ 162 (474)
..+||.|+.||..|+-.+.|... =++|.| |++.|+-|.||.++|.|-|. ..+ .-
T Consensus 26 ~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~QKLTtS----Dt~------Gl 94 (1189)
T KOG2041|consen 26 SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQKLTTS----DTS------GL 94 (1189)
T ss_pred CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEecccccccccc----CCC------ce
Confidence 78999999999999998775221 236887 88999999999999988662 233 57
Q ss_pred EEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE-EEEEcCCcEEEEEEcCCceEE
Q 011970 163 TKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSISDKHVQEIKISPGIMLL 241 (474)
Q Consensus 163 ~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~-l~tl~~~~V~~vafSpg~~la 241 (474)
|-+|-+-.|.......-- ..-.-+.+.++. .||+.+.-.=.||.|-|=.+...+. -+.|.+-....|.+||+..++
T Consensus 95 IiVWmlykgsW~EEMiNn--RnKSvV~SmsWn-~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINN--RNKSVVVSMSWN-LDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred EEEEeeecccHHHHHhhC--cCccEEEEEEEc-CCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence 789988888752110000 001113355665 5666666555566554433322110 012223233457778776655
Q ss_pred EEecCCCCccEEEEecCCC-------eEEEEEee----cCcceeEEEE-------EecCCCeEEEEeCCCcEEEEECCCC
Q 011970 242 IFNRSSSHVPLKILSIEDG-------TVLKVFYH----LLHRNKKVDF-------IEQFNEKLLVKQENENLQILDVRNA 303 (474)
Q Consensus 242 ~~s~~s~D~tIkLWdi~tG-------~~L~tl~~----h~~~v~~V~F-------~~~~~~~ll~~~~D~tIkIWDv~tg 303 (474)
.+..+ .+.+.|.|-+.- .|+-+..+ ..+.+-++.+ .+|+--.|++.-++|.+||---.+.
T Consensus 172 Lf~~a--nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 172 LFKKA--NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred Hhhhc--CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 55433 356677765321 12211111 1122333332 3456668888889999988644443
Q ss_pred -ceEEeccccCCceEEEEEcCCCcEEEEEc-C---------CcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCE
Q 011970 304 -ELMEVSRTEFMTPSAFIFLYENQLFLTFR-N---------RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDL 372 (474)
Q Consensus 304 -~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D---------~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~ 372 (474)
+..-+-.| +.+...-|+++|..||..+ | +.|..+..-|+.+.+|+-... -+.++.+-.-|=.
T Consensus 250 ~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~-----~It~lsWEg~gLr 322 (1189)
T KOG2041|consen 250 PEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGS-----CITGLSWEGTGLR 322 (1189)
T ss_pred CCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCc-----eeeeeEEcCCceE
Confidence 33333223 6778888999999998764 2 245555555887877764433 2566666666655
Q ss_pred EEEE
Q 011970 373 IISY 376 (474)
Q Consensus 373 LaS~ 376 (474)
||.+
T Consensus 323 iA~A 326 (1189)
T KOG2041|consen 323 IAIA 326 (1189)
T ss_pred EEEE
Confidence 5554
No 341
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.88 E-value=0.025 Score=61.80 Aligned_cols=71 Identities=10% Similarity=0.149 Sum_probs=58.6
Q ss_pred cCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC
Q 011970 269 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 342 (474)
Q Consensus 269 h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~ 342 (474)
+...+.+++++ |+.++++.|.+|++|.|||...+.-..+ .....|.-++|+|+|-+++.++ .|.+++||+.
T Consensus 258 L~s~v~~ca~s-p~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 258 LPSQVICCARS-PSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cCCcceEEecC-cccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 45678888887 6788999999999999999877643322 3446788899999999999999 7999999975
No 342
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.87 E-value=0.00035 Score=76.49 Aligned_cols=159 Identities=15% Similarity=0.183 Sum_probs=107.1
Q ss_pred ecCcceeEEEEEecCCCeEEEEe----CCCcEEEEECCCC--ceEEe--c-cccCCceEEEEEcCCCcEEEEEc-CCcEE
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNA--ELMEV--S-RTEFMTPSAFIFLYENQLFLTFR-NRTVA 337 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~~----~D~tIkIWDv~tg--~~~~~--l-~~h~~~v~sv~Fspdg~llaS~s-D~tIk 337 (474)
+|.....+++|+|-|-..|++|= .|-.++|||+.++ ...+. + .+-...+.++.+.-|-+++++|. .+.|+
T Consensus 100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ 179 (783)
T KOG1008|consen 100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVH 179 (783)
T ss_pred cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhh
Confidence 45566788899877666666652 5788999999988 33321 1 11223455788889999999998 88999
Q ss_pred EEeCCCcEEEEeccCCCCcCCCCeeEEEECC-CCCEEEEEecCCCccccccCCCCeEEEEeC-C-CCeEEEEecCCCC-C
Q 011970 338 VWNFRGELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKAEPEDQWMEGSAGSINVSSI-L-TGKCLAKINATNC-S 413 (474)
Q Consensus 338 lWd~~G~ll~tl~gH~~~~~~~~v~svafSp-Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi-~-tG~cl~tl~gH~~-~ 413 (474)
+.|++-.|.+.-+-.+.. |..+.+.| .+.|+++.+ ||-|-|||. . -.+.+.++....+ +
T Consensus 180 ifdlRqs~~~~~svnTk~-----vqG~tVdp~~~nY~cs~~------------dg~iAiwD~~rnienpl~~i~~~~N~~ 242 (783)
T KOG1008|consen 180 IFDLRQSLDSVSSVNTKY-----VQGITVDPFSPNYFCSNS------------DGDIAIWDTYRNIENPLQIILRNENKK 242 (783)
T ss_pred hhhhhhhhhhhhhhhhhh-----cccceecCCCCCceeccc------------cCceeeccchhhhccHHHHHhhCCCCc
Confidence 999976665543333333 46788899 999999875 899999992 1 1223333332222 1
Q ss_pred CCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCC-EEEEEcCC-CcEEEccC
Q 011970 414 PKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERN-EIYTGNRH-GLVHVWSN 474 (474)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~-~LaSgs~D-gtVklWd~ 474 (474)
| +.+..++|.|-.. .|++-++| ++|++.|+
T Consensus 243 ~-------------------------------~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 243 P-------------------------------KQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred c-------------------------------cceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 1 2688999999764 35555544 67888764
No 343
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.84 E-value=0.46 Score=49.78 Aligned_cols=204 Identities=14% Similarity=0.111 Sum_probs=106.6
Q ss_pred EEEEeCCCCeEEEEec-----CCCcEEEeecCCCeEEEE-EcCCcEEEEEEcCC-ceEEEEecCCC--------CccEEE
Q 011970 190 FVEFDDVNGKVLTYSA-----QDSIYKVFDLKNYTMLYS-ISDKHVQEIKISPG-IMLLIFNRSSS--------HVPLKI 254 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s-----~D~tiKlWdl~tg~~l~t-l~~~~V~~vafSpg-~~la~~s~~s~--------D~tIkL 254 (474)
..++| |||++||.+- ...++++.|+++|+.+.. +....-..+.|+++ ..+........ ...|++
T Consensus 128 ~~~~S-pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 128 GFSVS-PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEEET-TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeeEC-CCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 67887 7999999752 335799999999987653 33211223899975 44433332222 345888
Q ss_pred EecCCCeE--EEEEeecCcc--eeEEEEEecCCCeEEEEe---CC-CcEEEEECCCC----ceEEeccccCCceEEEEEc
Q 011970 255 LSIEDGTV--LKVFYHLLHR--NKKVDFIEQFNEKLLVKQ---EN-ENLQILDVRNA----ELMEVSRTEFMTPSAFIFL 322 (474)
Q Consensus 255 Wdi~tG~~--L~tl~~h~~~--v~~V~F~~~~~~~ll~~~---~D-~tIkIWDv~tg----~~~~~l~~h~~~v~sv~Fs 322 (474)
|.+.+++. .-.|+..... ...+..+ .++..+++.+ .+ ..+.+-|+.++ ...+.+..+...+...+-.
T Consensus 207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s-~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDEPFWFVSVSRS-KDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp EETTS-GGG-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred EECCCChHhCeeEEeecCCCcEEEEEEec-CcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence 88877642 2445543333 3456654 6777777643 33 55788898875 2223333333344444444
Q ss_pred CCCcEEEEEc----CCcEEEEeCC-Cc---EEEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeE
Q 011970 323 YENQLFLTFR----NRTVAVWNFR-GE---LVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSI 393 (474)
Q Consensus 323 pdg~llaS~s----D~tIklWd~~-G~---ll~tl~gH~~~~~~~~v~svafSpDg~-~LaS~s~~~~~~~~~~s~DgtI 393 (474)
.++.+++... ++.|---++. .. -...+-.|..-+ .+..+.. .++ ++++.-. .....|
T Consensus 286 ~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~---~l~~~~~--~~~~Lvl~~~~---------~~~~~l 351 (414)
T PF02897_consen 286 HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDV---SLEDVSL--FKDYLVLSYRE---------NGSSRL 351 (414)
T ss_dssp ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSE---EEEEEEE--ETTEEEEEEEE---------TTEEEE
T ss_pred cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCce---eEEEEEE--ECCEEEEEEEE---------CCccEE
Confidence 4666665443 3444444553 22 122343443321 1344443 343 4444433 124568
Q ss_pred EEEeCCCCeEEEEecC
Q 011970 394 NVSSILTGKCLAKINA 409 (474)
Q Consensus 394 klWdi~tG~cl~tl~g 409 (474)
+++|+..|+....+..
T Consensus 352 ~v~~~~~~~~~~~~~~ 367 (414)
T PF02897_consen 352 RVYDLDDGKESREIPL 367 (414)
T ss_dssp EEEETT-TEEEEEEES
T ss_pred EEEECCCCcEEeeecC
Confidence 8999864666655544
No 344
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.81 E-value=0.72 Score=47.59 Aligned_cols=212 Identities=12% Similarity=0.107 Sum_probs=124.8
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecC------CCe-EEEEEcC-------CcEEEEEEcCCceEEEEe-----
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK------NYT-MLYSISD-------KHVQEIKISPGIMLLIFN----- 244 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~------tg~-~l~tl~~-------~~V~~vafSpg~~la~~s----- 244 (474)
.++-+|.++|+ |.|..-++...-++..|+|.. ..+ ++-+++. .....+.|+.+.-+++..
T Consensus 21 ~L~N~WGia~~-p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 21 GLRNAWGLSYR-PGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred cccccceeEec-CCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccc
Confidence 46667799998 789999999889999999986 222 4556652 246677777533232211
Q ss_pred -----cCCCCccEEEEecCCCeEE---E--EEe-ecCcce-eEEEEEe-cCCCeEEEEe-CCCcEEEEECCCCceEEecc
Q 011970 245 -----RSSSHVPLKILSIEDGTVL---K--VFY-HLLHRN-KKVDFIE-QFNEKLLVKQ-ENENLQILDVRNAELMEVSR 310 (474)
Q Consensus 245 -----~~s~D~tIkLWdi~tG~~L---~--tl~-~h~~~v-~~V~F~~-~~~~~ll~~~-~D~tIkIWDv~tg~~~~~l~ 310 (474)
.+++|+||.=|+-.-+... . .+. .-...| +.+++-. .-+.+|-++- ..++|.++| .+-..+.+ .
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd-~~f~~~~~-~ 177 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK-GSFRPPPL-P 177 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEec-CccccccC-C
Confidence 1255777777774333221 1 111 111233 3444431 1124444443 577787777 23322221 1
Q ss_pred ccCCce-EEEEEc------CCCcEEEEEc--------------CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECC-
Q 011970 311 TEFMTP-SAFIFL------YENQLFLTFR--------------NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS- 368 (474)
Q Consensus 311 ~h~~~v-~sv~Fs------pdg~llaS~s--------------D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSp- 368 (474)
+-+..+ --.-|. -.+++++|-. -|-|-+.|.+|++++.|. +... -+.. |.|+.-|
T Consensus 178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~a-s~g~-LNaP-WG~a~APa 254 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVA-SSGR-LNAP-WGLAIAPE 254 (336)
T ss_pred CCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEec-cCCc-ccCC-ceeeeChh
Confidence 111111 000111 2466666642 368999999999999984 2222 1222 7899866
Q ss_pred -----CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCC
Q 011970 369 -----DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNC 412 (474)
Q Consensus 369 -----Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~ 412 (474)
.|++|+--- + ||+|+.+|..+|+.+-.|+.-+.
T Consensus 255 ~FG~~sg~lLVGNF----------G-DG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 255 SFGSLSGALLVGNF----------G-DGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred hhCCCCCCeEEeec----------C-CceeEEecCCCCceeeeecCCCC
Confidence 688888543 2 99999999999999999987654
No 345
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.79 E-value=0.81 Score=47.26 Aligned_cols=99 Identities=19% Similarity=0.267 Sum_probs=56.6
Q ss_pred cCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeE---EEEEc------CCcEEEEEEcCC----ceEEEEecC----CC
Q 011970 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSIS------DKHVQEIKISPG----IMLLIFNRS----SS 248 (474)
Q Consensus 186 ~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~---l~tl~------~~~V~~vafSpg----~~la~~s~~----s~ 248 (474)
..|++++|. |||++|++- ..|.|++.+ ++|.. +..+. ......|+|+|+ +.|.++... ..
T Consensus 2 ~~P~~~a~~-pdG~l~v~e-~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 2 NNPRSMAFL-PDGRLLVAE-RSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp SSEEEEEEE-TTSCEEEEE-TTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CCceEEEEe-CCCcEEEEe-CCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 457899998 799999865 599999999 66664 33442 246899999993 444443321 11
Q ss_pred C--ccEEEEecCCC-------eEE-EEEee---cCcceeEEEEEecCCCeEEEE
Q 011970 249 H--VPLKILSIEDG-------TVL-KVFYH---LLHRNKKVDFIEQFNEKLLVK 289 (474)
Q Consensus 249 D--~tIkLWdi~tG-------~~L-~tl~~---h~~~v~~V~F~~~~~~~ll~~ 289 (474)
. ..|.-|....+ +.+ ..+.. ..|....+.|. |++ +|.++
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fg-pDG-~LYvs 130 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFG-PDG-KLYVS 130 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE--TTS-EEEEE
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCC-CCC-cEEEE
Confidence 1 23444554444 112 22222 35666889998 445 66654
No 346
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.71 E-value=0.7 Score=46.21 Aligned_cols=183 Identities=14% Similarity=0.150 Sum_probs=106.2
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--C-CcEEEEEEcCCceEEEEecCCCCccEEEEecCCC--eE
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D-KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG--TV 262 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~-~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG--~~ 262 (474)
+-.++|+|.++.+.|.....+.|---++ +|+.+.+++ + +..-+|++..++.+++.+ ..++.+.+.++.+. ..
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~--Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSE--ERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEE--TTTTEEEEEEE----TT-
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEE--cCCCcEEEEEEecccccc
Confidence 3379998545666666777777766664 689888776 2 568889999777777764 33677888877321 11
Q ss_pred ----EEEEe-e----cCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC---CceEEe--------ccccCCceEEEEEc
Q 011970 263 ----LKVFY-H----LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN---AELMEV--------SRTEFMTPSAFIFL 322 (474)
Q Consensus 263 ----L~tl~-~----h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t---g~~~~~--------l~~h~~~v~sv~Fs 322 (474)
.+.+. + +....-.|+|. +.++.|++..+....+|+.+.. +..+.. .......+++++|.
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D-~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~ 179 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYD-PKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD 179 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEE-TTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred chhhceEEecccccCCCcceEEEEEc-CCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence 12232 1 22335789987 4567888888888888888764 222221 12234578999998
Q ss_pred CC-CcEEEEEc-CCcEEEEeCCCcEEEEec--c--CC--CCcCCCCeeEEEECCCCCEEEEE
Q 011970 323 YE-NQLFLTFR-NRTVAVWNFRGELVTSFE--D--HL--LWHPDCNTNNIYITSDQDLIISY 376 (474)
Q Consensus 323 pd-g~llaS~s-D~tIklWd~~G~ll~tl~--g--H~--~~~~~~~v~svafSpDg~~LaS~ 376 (474)
|. |++++-+. ++.|-..|.+|+.+..+. . |. ..++. -..|+|.|||.+.++.
T Consensus 180 p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~Q--pEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 180 PRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQ--PEGIAFDPDGNLYIVS 239 (248)
T ss_dssp TTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---S--EEEEEE-TT--EEEEE
T ss_pred CCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCC--ccEEEECCCCCEEEEc
Confidence 75 56666666 999999998899876443 2 11 01111 3689999999988873
No 347
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.61 E-value=0.8 Score=54.17 Aligned_cols=203 Identities=14% Similarity=0.123 Sum_probs=117.7
Q ss_pred ccEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEe
Q 011970 89 TKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 89 ~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw 166 (474)
..|.++.|- ..-|..+..+|.+-+=|.+|...-+ -|.-++.|-+..||||+++++.+. +... |-.- ++-|
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei--vg~vd~GI~aaswS~Dee~l~liT--~~~t---ll~m-T~~f 140 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI--VGNVDNGISAASWSPDEELLALIT--GRQT---LLFM-TKDF 140 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee--eeeccCceEEEeecCCCcEEEEEe--CCcE---EEEE-eccc
Confidence 467777777 4445555667777777888766433 233567799999999999988754 2111 1111 1111
Q ss_pred Ee-----------ccCCCCC------c---------cceeee-cc---------ccCceEEEEeCCCCeEEEEec----C
Q 011970 167 YI-----------RRGKPDS------G---------FALFES-ES---------LKWPGFVEFDDVNGKVLTYSA----Q 206 (474)
Q Consensus 167 ~i-----------~~G~~~~------~---------~~lf~~-~~---------~~~~~~V~Fs~~nGk~LaS~s----~ 206 (474)
++ +.+++.. . +..++. .+ -.+--+|++- -||++.|.+. .
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR-gDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR-GDGEYFAVSFVESET 219 (1265)
T ss_pred cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc-cCCcEEEEEEEeccC
Confidence 11 1111100 0 000000 00 0111147775 6999988733 3
Q ss_pred C-CcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEe----ecCcceeEEEE
Q 011970 207 D-SIYKVFDLKNYTMLYSIS--DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFY----HLLHRNKKVDF 278 (474)
Q Consensus 207 D-~tiKlWdl~tg~~l~tl~--~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~----~h~~~v~~V~F 278 (474)
| +.|||||-+ |.+-.+-. ...=.++++=| |..+|+.....+|..|.++- .+|-.-..|. -....+..++|
T Consensus 220 ~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~W 297 (1265)
T KOG1920|consen 220 GTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAW 297 (1265)
T ss_pred CceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeee
Confidence 5 899999976 65543322 12223577778 88899888888888898887 4565444433 11233788999
Q ss_pred EecCCCeEEEE----eCCCcEEEEECCCCc
Q 011970 279 IEQFNEKLLVK----QENENLQILDVRNAE 304 (474)
Q Consensus 279 ~~~~~~~ll~~----~~D~tIkIWDv~tg~ 304 (474)
++ ++-+|+. .+...|++|-+.+-.
T Consensus 298 ns--~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 298 NS--NSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cC--CCCceeeeecccccceEEEEEecCeE
Confidence 75 3444443 356669999877643
No 348
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.60 E-value=0.0004 Score=76.03 Aligned_cols=192 Identities=18% Similarity=0.149 Sum_probs=123.9
Q ss_pred ccEEEEeeCCCeEEeeecccc--ceeeEeecCCCceEEEEEEeeCC-CEEEEEEeecCCCccceeeeEEEEeEeccC--C
Q 011970 98 RDIVFALAHSGVCAAFSRETN--RRICFLNVSPDEVIRSLFYNKNN-DSLITVSVYASDNFSSLKCRSTKIEYIRRG--K 172 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg--~~l~~l~g~~~~~i~sv~fspdg-~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G--~ 172 (474)
+-+++.|+-+|.|.+=+...- .---+.++ +...-.+++|++-. ..||. +-+.++.= -.++|||+.++ .
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~-~ar~Ct~lAwneLDtn~LAa-gldkhrnd-----s~~~Iwdi~s~ltv 142 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSSAEVTPG-YARPCTSLAWNELDTNHLAA-GLDKHRND-----SSLKIWDINSLLTV 142 (783)
T ss_pred hhhhhhccccCceEEeecCCcccccceeccc-ccccccccccccccHHHHHh-hhhhhccc-----CCccceecccccCC
Confidence 467888888888888654311 11123343 44567899998863 33543 33332221 35678999888 3
Q ss_pred CCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCC-CeEEEEEcCCcEEEEEEcC--CceEEEEecCCCC
Q 011970 173 PDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISDKHVQEIKISP--GIMLLIFNRSSSH 249 (474)
Q Consensus 173 ~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t-g~~l~tl~~~~V~~vafSp--g~~la~~s~~s~D 249 (474)
+-.. ++|..+.+.-+.+|.+. -|-++|.+|..-+.|+++|+.. -.-...+....|+.+.++| .++++++ .|
T Consensus 143 Pke~-~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~----~d 216 (783)
T KOG1008|consen 143 PKES-PLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN----SD 216 (783)
T ss_pred Cccc-cccccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc----cc
Confidence 3222 34444334445578887 7899999999999999999862 2222344456788999998 7777754 37
Q ss_pred ccEEEEecC-C-CeEEEEEeecC----cceeEEEEEecCCCeEEEEe-CCCcEEEEECCC
Q 011970 250 VPLKILSIE-D-GTVLKVFYHLL----HRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN 302 (474)
Q Consensus 250 ~tIkLWdi~-t-G~~L~tl~~h~----~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~t 302 (474)
+.|-+||.. . -..+.++.+.. .++..++++|-.++.+++-+ .-++|+++|++.
T Consensus 217 g~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 217 GDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred CceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 789999931 1 12233333222 24789999988888888876 569999999874
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.59 E-value=0.63 Score=49.62 Aligned_cols=49 Identities=12% Similarity=0.244 Sum_probs=37.8
Q ss_pred cEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeE
Q 011970 209 IYKVFDLKNYTMLYSIS--DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV 262 (474)
Q Consensus 209 tiKlWdl~tg~~l~tl~--~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~ 262 (474)
.|+|++ ..|+++.++. .+.|-.+.|+.+..|++-. .|+++++.|+. |+.
T Consensus 62 ~I~iys-~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~---~dG~v~vy~~~-G~~ 112 (410)
T PF04841_consen 62 SIQIYS-SSGKLLSSIPWDSGRIVGMGWTDDEELVVVQ---SDGTVRVYDLF-GEF 112 (410)
T ss_pred EEEEEC-CCCCEeEEEEECCCCEEEEEECCCCeEEEEE---cCCEEEEEeCC-Cce
Confidence 599999 4788887765 5789999999766666653 37899999986 565
No 350
>PRK10115 protease 2; Provisional
Probab=96.57 E-value=1.6 Score=49.71 Aligned_cols=199 Identities=7% Similarity=0.022 Sum_probs=105.8
Q ss_pred EEEEeCCCCeEEEEecC-----CCcEEEeecCCCeEEE-EEcCCcEEEEEEcC-CceEEEEecCC---CCccEEEEecCC
Q 011970 190 FVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLY-SISDKHVQEIKISP-GIMLLIFNRSS---SHVPLKILSIED 259 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~-----D~tiKlWdl~tg~~l~-tl~~~~V~~vafSp-g~~la~~s~~s---~D~tIkLWdi~t 259 (474)
.+.+| |||++||.+.. ..++++=|+.+|+.+- .+.+.. ..++|+| +..++...... ....|.++++.|
T Consensus 131 ~~~~S-pdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt 208 (686)
T PRK10115 131 GMAIT-PDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGT 208 (686)
T ss_pred EEEEC-CCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCC
Confidence 67787 79999997643 3468888998887432 222222 4689996 44444443211 123588889999
Q ss_pred C--eEEEEEeecCcceeEEEEEecCCCeEEEEe---CCCcEEEEEC--CCCceEEeccccCCceEEEEEcCCCcEEEEEc
Q 011970 260 G--TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDV--RNAELMEVSRTEFMTPSAFIFLYENQLFLTFR 332 (474)
Q Consensus 260 G--~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~---~D~tIkIWDv--~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s 332 (474)
+ +-...|+......+-..+.+.++..+++.+ .+..+.+++. .+++....+.........+. ..++.+++...
T Consensus 209 ~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn 287 (686)
T PRK10115 209 PASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSN 287 (686)
T ss_pred ChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEc
Confidence 8 333344432233331222334677777643 5678999994 34553333322223333333 44556666554
Q ss_pred -C-CcEEEEeC--C--CcEEEEeccC-CCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC-CCeEE
Q 011970 333 -N-RTVAVWNF--R--GELVTSFEDH-LLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL-TGKCL 404 (474)
Q Consensus 333 -D-~tIklWd~--~--G~ll~tl~gH-~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~-tG~cl 404 (474)
+ ..-+|..+ . ++ .+.+-.| ..+ .+..+.++ .+.+++++.. ++.-+|+-+. .++.+
T Consensus 288 ~~~~~~~l~~~~~~~~~~-~~~l~~~~~~~----~i~~~~~~-~~~l~~~~~~-----------~g~~~l~~~~~~~~~~ 350 (686)
T PRK10115 288 RHGKNFGLYRTRVRDEQQ-WEELIPPRENI----MLEGFTLF-TDWLVVEERQ-----------RGLTSLRQINRKTREV 350 (686)
T ss_pred CCCCCceEEEecCCCccc-CeEEECCCCCC----EEEEEEEE-CCEEEEEEEe-----------CCEEEEEEEcCCCCce
Confidence 2 24555543 2 22 2334444 332 26778877 3366666654 5555554332 24445
Q ss_pred EEec
Q 011970 405 AKIN 408 (474)
Q Consensus 405 ~tl~ 408 (474)
..|.
T Consensus 351 ~~l~ 354 (686)
T PRK10115 351 IGIA 354 (686)
T ss_pred EEec
Confidence 5543
No 351
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.48 E-value=0.77 Score=46.64 Aligned_cols=130 Identities=15% Similarity=0.152 Sum_probs=78.2
Q ss_pred ccEEEEecCCC----eEEEEEe--ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc-eEEeccc-cCCceEEEEE
Q 011970 250 VPLKILSIEDG----TVLKVFY--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LMEVSRT-EFMTPSAFIF 321 (474)
Q Consensus 250 ~tIkLWdi~tG----~~L~tl~--~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~-~~~~l~~-h~~~v~sv~F 321 (474)
+.|.+.++... ..|+.+. ...+.|.++. +.+++|+++ .++.|.+|++...+ ++..-.. ....+.++.-
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~---~~~~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAIC---SFNGRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEE---EETTEEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhh---hhCCEEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 66888888874 2333221 2346777777 447885555 46999999999988 6654222 2224555433
Q ss_pred cCCCcEEEEEc-CCcEEEEeC--CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeC
Q 011970 322 LYENQLFLTFR-NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 322 spdg~llaS~s-D~tIklWd~--~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
.+.+++.|. .+.|.+..+ +++.+..+....... .+.++.|-+|++.++.+.. +|.|.++..
T Consensus 138 --~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~---~v~~~~~l~d~~~~i~~D~-----------~gnl~~l~~ 201 (321)
T PF03178_consen 138 --FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR---WVTAAEFLVDEDTIIVGDK-----------DGNLFVLRY 201 (321)
T ss_dssp --ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B---EEEEEEEE-SSSEEEEEET-----------TSEEEEEEE
T ss_pred --cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc---cEEEEEEecCCcEEEEEcC-----------CCeEEEEEE
Confidence 355777776 777777654 465444443322221 2678888878777777665 899988876
Q ss_pred C
Q 011970 399 L 399 (474)
Q Consensus 399 ~ 399 (474)
.
T Consensus 202 ~ 202 (321)
T PF03178_consen 202 N 202 (321)
T ss_dssp -
T ss_pred C
Confidence 4
No 352
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.37 E-value=0.23 Score=58.44 Aligned_cols=113 Identities=13% Similarity=0.162 Sum_probs=74.8
Q ss_pred EEEEEcCCCcEEEEE-----cC-CcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCC
Q 011970 317 SAFIFLYENQLFLTF-----RN-RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSA 390 (474)
Q Consensus 317 ~sv~Fspdg~llaS~-----sD-~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~D 390 (474)
.+|.|--||++||.+ .+ ++|++||.+|.+-.+=+--..- =.++++=|.|.+||+--. .++|
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l-----~~~LsWkPsgs~iA~iq~--------~~sd 265 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGL-----QHSLSWKPSGSLIAAIQC--------KTSD 265 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCccccc-----ccceeecCCCCeEeeeee--------cCCC
Confidence 468899999999983 36 8999999887664333222211 135889999999998654 2457
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEE---EcCCC
Q 011970 391 GSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYT---GNRHG 467 (474)
Q Consensus 391 gtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaS---gs~Dg 467 (474)
++|.++. .+|-. |..+ .-..|.--..|..|+|+.++..||. .....
T Consensus 266 ~~IvffE-rNGL~------hg~f------------------------~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~ 314 (1265)
T KOG1920|consen 266 SDIVFFE-RNGLR------HGEF------------------------VLPFPLDEKEVEELAWNSNSDILAVVTSNLENS 314 (1265)
T ss_pred CcEEEEe-cCCcc------cccc------------------------ccCCcccccchheeeecCCCCceeeeecccccc
Confidence 7899987 45532 3210 0000100013889999999999997 55666
Q ss_pred cEEEcc
Q 011970 468 LVHVWS 473 (474)
Q Consensus 468 tVklWd 473 (474)
.|+||-
T Consensus 315 ~v~lwt 320 (1265)
T KOG1920|consen 315 LVQLWT 320 (1265)
T ss_pred eEEEEE
Confidence 699993
No 353
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.17 E-value=0.54 Score=47.74 Aligned_cols=172 Identities=12% Similarity=0.133 Sum_probs=103.3
Q ss_pred cEEEEecCCCeEEEEEeec-CcceeEEEEEecC------CCeEEEEe-----C-----CCcEEEEECCCC-----ceEEe
Q 011970 251 PLKILSIEDGTVLKVFYHL-LHRNKKVDFIEQF------NEKLLVKQ-----E-----NENLQILDVRNA-----ELMEV 308 (474)
Q Consensus 251 tIkLWdi~tG~~L~tl~~h-~~~v~~V~F~~~~------~~~ll~~~-----~-----D~tIkIWDv~tg-----~~~~~ 308 (474)
.|+|-|-.+.+.+.+++-. ...+.++...... ...+++|. + .|.|.++++... ++...
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 4788888888888777622 2344554443322 34566652 1 178999999985 33222
Q ss_pred -ccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC-Cc-EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCcccc
Q 011970 309 -SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQW 385 (474)
Q Consensus 309 -l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~-ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~ 385 (474)
.....+.|.+++-- +|+ |+.+.+++|.+|++. .+ ++..-.-+... .+.++ +.-+++|+.|..
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~----~i~sl--~~~~~~I~vgD~------- 147 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPF----YITSL--SVFKNYILVGDA------- 147 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSS----SEEEE--EEETTEEEEEES-------
T ss_pred EEEeecCcceEhhhh-CCE-EEEeecCEEEEEEccCcccchhhheecceE----EEEEE--eccccEEEEEEc-------
Confidence 12345678888643 555 656667999999995 55 54432222221 13344 444668887764
Q ss_pred ccCCCCeEEEEeCC-CCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEc
Q 011970 386 MEGSAGSINVSSIL-TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGN 464 (474)
Q Consensus 386 ~~s~DgtIklWdi~-tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs 464 (474)
.+.|-+.... .++.+..+..... | .+|+++.|-+|++.++.+.
T Consensus 148 ----~~sv~~~~~~~~~~~l~~va~d~~-~-------------------------------~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 148 ----MKSVSLLRYDEENNKLILVARDYQ-P-------------------------------RWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp ----SSSEEEEEEETTTE-EEEEEEESS---------------------------------BEEEEEEEE-SSSEEEEEE
T ss_pred ----ccCEEEEEEEccCCEEEEEEecCC-C-------------------------------ccEEEEEEecCCcEEEEEc
Confidence 5677776432 3454444432221 1 1799999998888999999
Q ss_pred CCCcEEEcc
Q 011970 465 RHGLVHVWS 473 (474)
Q Consensus 465 ~DgtVklWd 473 (474)
.+|.|.+..
T Consensus 192 ~~gnl~~l~ 200 (321)
T PF03178_consen 192 KDGNLFVLR 200 (321)
T ss_dssp TTSEEEEEE
T ss_pred CCCeEEEEE
Confidence 999998763
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.11 E-value=0.22 Score=53.75 Aligned_cols=134 Identities=13% Similarity=0.233 Sum_probs=76.4
Q ss_pred eeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEE-eCCCcEEEEec
Q 011970 273 NKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW-NFRGELVTSFE 350 (474)
Q Consensus 273 v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklW-d~~G~ll~tl~ 350 (474)
..++.++ |.+..+++ ..|+.--|+......-... +.-..++|.+.++ +|.-. +++|+|. |++.+-+.++.
T Consensus 35 p~~ls~n-pngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~ 106 (443)
T PF04053_consen 35 PQSLSHN-PNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIK 106 (443)
T ss_dssp -SEEEE--TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT----
T ss_pred CeeEEEC-CCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEc
Confidence 4677776 44455555 7788888887443332222 2334688999776 55554 8999994 66544333332
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccc
Q 011970 351 DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKK 430 (474)
Q Consensus 351 gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~ 430 (474)
-.. .+..|.- |.+|+..+ ++.|-++|+++++.++.+.-.
T Consensus 107 ~~~------~~~~If~---G~LL~~~~------------~~~i~~yDw~~~~~i~~i~v~-------------------- 145 (443)
T PF04053_consen 107 LPF------SVEKIFG---GNLLGVKS------------SDFICFYDWETGKLIRRIDVS-------------------- 145 (443)
T ss_dssp -SS-------EEEEE----SSSEEEEE------------TTEEEEE-TTT--EEEEESS---------------------
T ss_pred CCc------ccceEEc---CcEEEEEC------------CCCEEEEEhhHcceeeEEecC--------------------
Confidence 211 1455644 99888765 568999999999999999532
Q ss_pred ccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEc
Q 011970 431 LNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 472 (474)
Q Consensus 431 ~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklW 472 (474)
.|..|.||+||+.+|=.+.|. +.+.
T Consensus 146 ----------------~vk~V~Ws~~g~~val~t~~~-i~il 170 (443)
T PF04053_consen 146 ----------------AVKYVIWSDDGELVALVTKDS-IYIL 170 (443)
T ss_dssp ----------------E-EEEEE-TTSSEEEEE-S-S-EEEE
T ss_pred ----------------CCcEEEEECCCCEEEEEeCCe-EEEE
Confidence 578899999999999888764 4443
No 355
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.031 Score=61.53 Aligned_cols=77 Identities=13% Similarity=0.060 Sum_probs=63.0
Q ss_pred eEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEE
Q 011970 316 PSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 394 (474)
Q Consensus 316 v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIk 394 (474)
+.-+.++|...++|... +|.|-+.-++-+.+.++.-|...+ +.++++-|||++||-|-+ ||+|+
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~v----~~sL~W~~DGkllaVg~k-----------dG~I~ 87 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGENV----TASLCWRPDGKLLAVGFK-----------DGTIR 87 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCcc----ceeeeecCCCCEEEEEec-----------CCeEE
Confidence 45577899999999998 998888887777777776454432 249999999999999987 99999
Q ss_pred EEeCCCCeEEEEe
Q 011970 395 VSSILTGKCLAKI 407 (474)
Q Consensus 395 lWdi~tG~cl~tl 407 (474)
|-|+.+|..+...
T Consensus 88 L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 88 LHDVEKGGRLVSF 100 (665)
T ss_pred EEEccCCCceecc
Confidence 9999999887663
No 356
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.98 E-value=0.55 Score=52.57 Aligned_cols=188 Identities=11% Similarity=0.101 Sum_probs=97.2
Q ss_pred ceEEEEEEeeCCCEEEEEEe--ecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC
Q 011970 130 EVIRSLFYNKNNDSLITVSV--YASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 207 (474)
Q Consensus 130 ~~i~sv~fspdg~~Lis~S~--~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D 207 (474)
..+.+.++||||+.+|.+-. +...| ..-.||=...|.-. .++..... ...-.|| |||+.|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d------~~s~Lwv~~~gg~~--~~lt~g~~---~t~PsWs-pDG~~lw~v~dg 417 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPD------PASSLWVGPLGGVA--VQVLEGHS---LTRPSWS-LDADAVWVVVDG 417 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCC------cceEEEEEeCCCcc--eeeecCCC---CCCceEC-CCCCceEEEecC
Confidence 46789999999999887652 11112 23344443323321 12322212 2246787 788877776532
Q ss_pred -CcE---------EEe--ecCCCeEEEEEcCCcEEEEEEcC-CceEEEEecCCCCccEEE---EecCCCeE-E---EEEe
Q 011970 208 -SIY---------KVF--DLKNYTMLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKI---LSIEDGTV-L---KVFY 267 (474)
Q Consensus 208 -~ti---------KlW--dl~tg~~l~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkL---Wdi~tG~~-L---~tl~ 267 (474)
... .+| ++..|+....+ +..|.++++|| |.++|... ++.|.+ =....|+. | ..+.
T Consensus 418 ~~~~~v~~~~~~gql~~~~vd~ge~~~~~-~g~Issl~wSpDG~RiA~i~----~g~v~Va~Vvr~~~G~~~l~~~~~l~ 492 (591)
T PRK13616 418 NTVVRVIRDPATGQLARTPVDASAVASRV-PGPISELQLSRDGVRAAMII----GGKVYLAVVEQTEDGQYALTNPREVG 492 (591)
T ss_pred cceEEEeccCCCceEEEEeccCchhhhcc-CCCcCeEEECCCCCEEEEEE----CCEEEEEEEEeCCCCceeecccEEee
Confidence 122 233 44444332211 35699999998 44555443 234554 45556751 1 1122
Q ss_pred -ecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC-CceEEeccc--cCCceEEEEEcCCCcEEEEEcCCcEE
Q 011970 268 -HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-AELMEVSRT--EFMTPSAFIFLYENQLFLTFRNRTVA 337 (474)
Q Consensus 268 -~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t-g~~~~~l~~--h~~~v~sv~Fspdg~llaS~sD~tIk 337 (474)
+....+..++|.. ++.|+++..+..-.+|-+.- |.....+.+ ....+.+|+=++ +.++++.+++.++
T Consensus 493 ~~l~~~~~~l~W~~--~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~-~~iyv~~~~g~~~ 563 (591)
T PRK13616 493 PGLGDTAVSLDWRT--GDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP-STVYVTDARAVLQ 563 (591)
T ss_pred cccCCccccceEec--CCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCC-ceEEEEcCCceEE
Confidence 2223357788863 56677765444444554331 332222222 355667776666 4566665566443
No 357
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.97 E-value=0.011 Score=58.01 Aligned_cols=137 Identities=15% Similarity=0.072 Sum_probs=85.6
Q ss_pred eEEEEeCCCcEEEEECCCCceE--Ee-ccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC--CcEEEEeccCCCCcCC
Q 011970 285 KLLVKQENENLQILDVRNAELM--EV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPD 358 (474)
Q Consensus 285 ~ll~~~~D~tIkIWDv~tg~~~--~~-l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~ 358 (474)
.+++.+.|++|+=.+++--+.- .. +....+.| ---+..++.|. |+.|.+|+.+ |+..--...-...
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v-----~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~--- 103 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRV-----VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES--- 103 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceee-----cccCceEEeecccceEEEecCCccchHHHhhhccccc---
Confidence 3566788888888877643321 11 00011111 12234456666 9999999975 5432211111111
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccccc
Q 011970 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 438 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (474)
....|....++.+...++. ||.||.|+++-++.+-....|+.
T Consensus 104 -i~~~Ip~~~~~~~~c~~~~-----------dg~ir~~n~~p~k~~g~~g~h~~-------------------------- 145 (238)
T KOG2444|consen 104 -IDLGIPNGRDSSLGCVGAQ-----------DGRIRACNIKPNKVLGYVGQHNF-------------------------- 145 (238)
T ss_pred -ceeccccccccceeEEecc-----------CCceeeeccccCceeeeeccccC--------------------------
Confidence 1234555556666666654 99999999999999888877873
Q ss_pred ccccccccCEEEEEEcCCCCEEEEE--cCCCcEEEccC
Q 011970 439 STVGEALEDITSLFYDEERNEIYTG--NRHGLVHVWSN 474 (474)
Q Consensus 439 ~~~~~~l~~V~slafSpDg~~LaSg--s~DgtVklWd~ 474 (474)
+.+..+.-+--++.|+++ |.|.++|.|++
T Consensus 146 -------~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 146 -------ESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred -------CCcceeEEecCCceEEeeccccchhhhhcch
Confidence 145556667777788888 99999999974
No 358
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.97 E-value=1.7 Score=44.86 Aligned_cols=202 Identities=12% Similarity=0.122 Sum_probs=121.3
Q ss_pred eEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-------CCcEEEEE
Q 011970 161 RSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-------DKHVQEIK 233 (474)
Q Consensus 161 ~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-------~~~V~~va 233 (474)
..+.-|+...|+. ..|.... .......++ ..|.+++ +. .-+.+++++++.....+. ...-.+++
T Consensus 47 ~~i~r~~~~~g~~----~~~~~p~-~~~~~~~~d-~~g~Lv~-~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~ 117 (307)
T COG3386 47 GRIHRLDPETGKK----RVFPSPG-GFSSGALID-AGGRLIA-CE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGV 117 (307)
T ss_pred CeEEEecCCcCce----EEEECCC-Ccccceeec-CCCeEEE-Ec--cccEEEeccCCceeEEeccccCCCCcCCCCcee
Confidence 4444455555553 2344311 112235665 4565444 32 346788887766533332 13456788
Q ss_pred EcCCceEEEEecCC----CC--c-cEEEEecC-CCeEEEEEeecCcceeEEEEEecCCCeEEEE-eCCCcEEEEECCC--
Q 011970 234 ISPGIMLLIFNRSS----SH--V-PLKILSIE-DGTVLKVFYHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN-- 302 (474)
Q Consensus 234 fSpg~~la~~s~~s----~D--~-tIkLWdi~-tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~t-- 302 (474)
+.|++.+..+.... .. . .-.||-+. .|...+-+..|...-+.++|+ |++..+... +..+.|.-+++..
T Consensus 118 v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~S-pDg~tly~aDT~~~~i~r~~~d~~~ 196 (307)
T COG3386 118 VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFS-PDGKTLYVADTPANRIHRYDLDPAT 196 (307)
T ss_pred EcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEEC-CCCCEEEEEeCCCCeEEEEecCccc
Confidence 88877766664430 11 1 12466665 678877777666666899998 667777776 5668888777652
Q ss_pred Cce-----EEeccccCCceEEEEEcCCCcEEEEEc-CC-cEEEEeCCCcEEEEeccCCCCcCCCCeeEEEE-CCCCCEEE
Q 011970 303 AEL-----MEVSRTEFMTPSAFIFLYENQLFLTFR-NR-TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLII 374 (474)
Q Consensus 303 g~~-----~~~l~~h~~~v~sv~Fspdg~llaS~s-D~-tIklWd~~G~ll~tl~gH~~~~~~~~v~svaf-SpDg~~La 374 (474)
+.. ......+...+-.++.--||.+.+++- ++ -|..|+.+|+++...+-+..+ +.+++| .|+.+.|.
T Consensus 197 g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~-----~t~~~FgG~~~~~L~ 271 (307)
T COG3386 197 GPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKR-----PTNPAFGGPDLNTLY 271 (307)
T ss_pred CccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCC-----CccceEeCCCcCEEE
Confidence 221 112223445666667777899887554 54 899999999999998877554 345555 56666666
Q ss_pred EEe
Q 011970 375 SYC 377 (474)
Q Consensus 375 S~s 377 (474)
..+
T Consensus 272 iTs 274 (307)
T COG3386 272 ITS 274 (307)
T ss_pred EEe
Confidence 554
No 359
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.93 E-value=2.2 Score=43.14 Aligned_cols=174 Identities=13% Similarity=0.073 Sum_probs=97.8
Q ss_pred CeEEEEEcC---CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcce--eEEEEEecCCCeEEE-EeC
Q 011970 218 YTMLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRN--KKVDFIEQFNEKLLV-KQE 291 (474)
Q Consensus 218 g~~l~tl~~---~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v--~~V~F~~~~~~~ll~-~~~ 291 (474)
++.+.+.+. ...+.+.|.+++.|.-++.--+...|+.+|++||+.++...-. ... ..++.. +++|.. .=.
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~-~~~FgEGit~~---~d~l~qLTWk 108 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP-PRYFGEGITIL---GDKLYQLTWK 108 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T-TT--EEEEEEE---TTEEEEEESS
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC-ccccceeEEEE---CCEEEEEEec
Confidence 455666652 4689999954444444332233457999999999998765521 112 223322 344443 346
Q ss_pred CCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeC-CCcEEEEeccCCCCcCCCCeeEEEECCCC
Q 011970 292 NENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQ 370 (474)
Q Consensus 292 D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDg 370 (474)
+++.-+||..+-+.+.++.-. ..-|.++ +.+..++.|-+..++..+|. +-+.+.+++-...-.+-..+|.+-+- ||
T Consensus 109 ~~~~f~yd~~tl~~~~~~~y~-~EGWGLt-~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G 185 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTFPYP-GEGWGLT-SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NG 185 (264)
T ss_dssp SSEEEEEETTTTEEEEEEE-S-SS--EEE-ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TT
T ss_pred CCeEEEEccccceEEEEEecC-CcceEEE-cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cC
Confidence 789999999999988875432 3557776 33444444434678888887 35555554432221111235666664 78
Q ss_pred CEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 371 DLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 371 ~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
.+.|=-=. ...|-.-|..||+++..+.-
T Consensus 186 ~IyANVW~-----------td~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 186 KIYANVWQ-----------TDRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp EEEEEETT-----------SSEEEEEETTT-BEEEEEE-
T ss_pred EEEEEeCC-----------CCeEEEEeCCCCeEEEEEEh
Confidence 77775433 34455568899999888743
No 360
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.019 Score=60.37 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=64.5
Q ss_pred EeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCC
Q 011970 348 SFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTG 426 (474)
Q Consensus 348 tl~gH~~~~~~~~v~svafSpDg~-~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~ 426 (474)
-+-+|... +++++|||... +|..++. +.+|||-|+.|-.|+.+...|.
T Consensus 188 ~lp~~g~~-----IrdlafSp~~~GLl~~asl-----------~nkiki~dlet~~~vssy~a~~--------------- 236 (463)
T KOG1645|consen 188 ILPGEGSF-----IRDLAFSPFNEGLLGLASL-----------GNKIKIMDLETSCVVSSYIAYN--------------- 236 (463)
T ss_pred cccccchh-----hhhhccCccccceeeeecc-----------CceEEEEecccceeeeheeccC---------------
Confidence 34455554 68999999999 7777765 9999999999999999999885
Q ss_pred ccccccccccccccccccccCEEEEEEcCCC-CEEEEEcCCCcEEEccC
Q 011970 427 KSKKLNKSSYIRSTVGEALEDITSLFYDEER-NEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~l~~V~slafSpDg-~~LaSgs~DgtVklWd~ 474 (474)
.+||++|+-|. +.||.|-..|.|-++|+
T Consensus 237 --------------------~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 237 --------------------QIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred --------------------CceeeeeccCCcceeEEeccCceEEEEEc
Confidence 79999999865 67999999999999885
No 361
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.72 E-value=0.069 Score=61.08 Aligned_cols=144 Identities=13% Similarity=0.163 Sum_probs=100.3
Q ss_pred CCCeEEEEecCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEecCCC------CccEEEEecCCCeEEEEEe
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KHVQEIKISPGIMLLIFNRSSS------HVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~--~~V~~vafSpg~~la~~s~~s~------D~tIkLWdi~tG~~L~tl~ 267 (474)
.|+++|-.|.+-|+|-|=|+++-+.++++.. +.|.++..+ |..|++.+-... |.-||+||++.=+.|.-+.
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~-GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~ 263 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ-GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ 263 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc-CCeEEEeecccccccccccchhhhhhhhhhhccCCcc
Confidence 5899999999999999999999999999864 345444433 677777654322 4468999997654444333
Q ss_pred ecCcceeEEEEEecCCCeEEEEeCCCcEEEEE---CCCCce-EEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC
Q 011970 268 HLLHRNKKVDFIEQFNEKLLVKQENENLQILD---VRNAEL-MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 341 (474)
Q Consensus 268 ~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWD---v~tg~~-~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~ 341 (474)
-+-++ .=+.|.|.-..++++.+.-|..++-| +.+-.. +.-...-...+.++.+|+.|+.+|-+. +|.|.+|--
T Consensus 264 ~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 264 FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 22222 22445554457888899999999988 333211 111222334588999999999999998 999999984
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.62 E-value=0.6 Score=41.29 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=46.6
Q ss_pred eeEEEEEecCC---CeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcE
Q 011970 273 NKKVDFIEQFN---EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGEL 345 (474)
Q Consensus 273 v~~V~F~~~~~---~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~l 345 (474)
|.++++...++ ..|+++++|..||+|+ ..+++... .+...|.+++-.+.++ |+.+- +|||-+++-.-.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei-~e~~~v~~L~~~~~~~-F~Y~l~NGTVGvY~~~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEI-TETDKVTSLCSLGGGR-FAYALANGTVGVYDRSQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEE-ecccceEEEEEcCCCE-EEEEecCCEEEEEeCccee
Confidence 44555554333 4789999999999997 33444332 3456788888777765 55555 9999999864333
No 363
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.60 E-value=3.1 Score=42.31 Aligned_cols=258 Identities=13% Similarity=0.050 Sum_probs=123.5
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEE-EEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCc
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRS-LFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSG 176 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~s-v~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~ 176 (474)
||.++-|.++|.+-+-+..||..+-.+.- - +.|.+ -.--++++.|-.+| .| ++...-|+++-.+.-.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~-~-~~vk~~a~~d~~~glIycgs----hd------~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVI-L-ETVKVRAQCDFDGGLIYCGS----HD------GNFYALDPKTYGCVYK 130 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeee-h-hhhccceEEcCCCceEEEec----CC------CcEEEecccccceEEe
Confidence 88899999999999999999955544442 2 33333 34477888776654 44 4544455554443100
Q ss_pred c----ceeeeccccC-ceEEEEeCCCCeEEEEecCCCcE-EEeecCCCeEEEEEcCCcEEEEEEc-CCceEEEEecCCCC
Q 011970 177 F----ALFESESLKW-PGFVEFDDVNGKVLTYSAQDSIY-KVFDLKNYTMLYSISDKHVQEIKIS-PGIMLLIFNRSSSH 249 (474)
Q Consensus 177 ~----~lf~~~~~~~-~~~V~Fs~~nGk~LaS~s~D~ti-KlWdl~tg~~l~tl~~~~V~~vafS-pg~~la~~s~~s~D 249 (474)
. ..|..--+.. ..++-|..-.|.+||..-.++.- -+|-..-+.+++.-+.---.++.+. -++.|++++..
T Consensus 131 skcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~s--- 207 (354)
T KOG4649|consen 131 SKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDES--- 207 (354)
T ss_pred cccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEEEEEcCC---
Confidence 0 0122100000 11222222357777766555521 2554333333321110001123332 14455555321
Q ss_pred ccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcE--------EEEECCCCceEEeccccCCceEEEEE
Q 011970 250 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENL--------QILDVRNAELMEVSRTEFMTPSAFIF 321 (474)
Q Consensus 250 ~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tI--------kIWDv~tg~~~~~l~~h~~~v~sv~F 321 (474)
+ =.+|...|+-.+-.-....+ |.-++|....+|.-+ -+|.-++|...++..... --|.|
T Consensus 208 G-~qvwr~~t~GpIf~~Pc~s~---------Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~---l~F~~ 274 (354)
T KOG4649|consen 208 G-RQVWRPATKGPIFMEPCESR---------PSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK---LRFDL 274 (354)
T ss_pred C-cEEEeecCCCceecccccCC---------CcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc---cceec
Confidence 2 34676666554322111111 111233333343332 356666665444322111 01222
Q ss_pred -cCC---CcEEEEEc-CCcEEEE---------eCCCcEEEEeccCCCCcCCCCeeEEEECC---CCCEEEEEecCCCccc
Q 011970 322 -LYE---NQLFLTFR-NRTVAVW---------NFRGELVTSFEDHLLWHPDCNTNNIYITS---DQDLIISYCKAEPEDQ 384 (474)
Q Consensus 322 -spd---g~llaS~s-D~tIklW---------d~~G~ll~tl~gH~~~~~~~~v~svafSp---Dg~~LaS~s~~~~~~~ 384 (474)
+|. -++|..++ ||.+.|- +-+|-.++.++.-... +.|.-|| ||++|+ ||.
T Consensus 275 h~~~~S~~~ll~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~~el~------~eIFsSPvii~grl~i-gcR------ 341 (354)
T KOG4649|consen 275 HSPGISYPKLLRRSSGDGKVMILMTSKSLAEISSNGGELQNLEAIELS------NEIFSSPVIIDGRLLI-GCR------ 341 (354)
T ss_pred cCCCCcchhhhhhhcCCCcEEEEEecccccccccCCCccceEEEeecC------cccccCCeEEccEEEE-EEc------
Confidence 122 23444455 9988777 4443344444432221 2344445 687666 665
Q ss_pred cccCCCCeEEEEeCCCC
Q 011970 385 WMEGSAGSINVSSILTG 401 (474)
Q Consensus 385 ~~~s~DgtIklWdi~tG 401 (474)
|..++-||+.++
T Consensus 342 -----DdYv~cldl~~~ 353 (354)
T KOG4649|consen 342 -----DDYVRCLDLDTW 353 (354)
T ss_pred -----cCeEEEEecccc
Confidence 999999999775
No 364
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.54 E-value=0.4 Score=55.16 Aligned_cols=133 Identities=15% Similarity=0.151 Sum_probs=92.0
Q ss_pred CCccEEEEecCCCeEEEEEeecCcc-eeEEE----EEecCCCeEEEEeCCCcEEEEECCCC--ceEEeccc----cCCce
Q 011970 248 SHVPLKILSIEDGTVLKVFYHLLHR-NKKVD----FIEQFNEKLLVKQENENLQILDVRNA--ELMEVSRT----EFMTP 316 (474)
Q Consensus 248 ~D~tIkLWdi~tG~~L~tl~~h~~~-v~~V~----F~~~~~~~ll~~~~D~tIkIWDv~tg--~~~~~l~~----h~~~v 316 (474)
....|.-.||++|+++....-|-.. +..++ |..-.++..+.|=.++.+-.||.|-. +++.. .+ .....
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~-~~k~Y~~~~~F 580 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS-QSKQYSSKNNF 580 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec-cccccccCCCc
Confidence 3467888999999999999865332 43333 11112567778888999999999853 23321 22 22345
Q ss_pred EEEEEcCCCcEEEEEcCCcEEEEeCCCcE-EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 011970 317 SAFIFLYENQLFLTFRNRTVAVWNFRGEL-VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 395 (474)
Q Consensus 317 ~sv~Fspdg~llaS~sD~tIklWd~~G~l-l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIkl 395 (474)
++++-+-+|.+++.+.+|-|||+|--|.- .+.|.+-..+ |..|..|.||++|+..| +..+-|
T Consensus 581 s~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~p-----I~~iDvt~DGkwilaTc------------~tyLlL 643 (794)
T PF08553_consen 581 SCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDP-----IIGIDVTADGKWILATC------------KTYLLL 643 (794)
T ss_pred eEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCC-----eeEEEecCCCcEEEEee------------cceEEE
Confidence 56777888876554449999999965643 4455554444 78999999999999888 578888
Q ss_pred EeC
Q 011970 396 SSI 398 (474)
Q Consensus 396 Wdi 398 (474)
.+.
T Consensus 644 i~t 646 (794)
T PF08553_consen 644 IDT 646 (794)
T ss_pred EEE
Confidence 885
No 365
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.54 E-value=5 Score=44.33 Aligned_cols=193 Identities=15% Similarity=0.103 Sum_probs=112.7
Q ss_pred CCeEEEEecCCCcEEEeecCCCeEEEEEcC---CcEE----------EEEEcCCceEEEEecCCCCccEEEEecCCCeEE
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQ----------EIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~---~~V~----------~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L 263 (474)
+|.+.+ ++.++.|.=.|++||+.+.+..- ..+. .+++.. +++... ..|+.|.-.|.+||+.+
T Consensus 69 ~g~vyv-~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~-~~v~v~---t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYV-TTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYD-GKVFFG---TLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEE-ECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEEC-CEEEEE---cCCCEEEEEECCCCCEE
Confidence 565544 44566777778889988876541 1121 234443 344443 33677888899999998
Q ss_pred EEEeecC-cceeEEEEEe-cCCCeEEEEe------CCCcEEEEECCCCceEEec---ccc--------------------
Q 011970 264 KVFYHLL-HRNKKVDFIE-QFNEKLLVKQ------ENENLQILDVRNAELMEVS---RTE-------------------- 312 (474)
Q Consensus 264 ~tl~~h~-~~v~~V~F~~-~~~~~ll~~~------~D~tIkIWDv~tg~~~~~l---~~h-------------------- 312 (474)
-.+.... ..-..+.-.| ..+++++++. .++.|.-.|.+||+.+-.. ...
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 7765211 1001111000 1256777764 2789999999999977431 111
Q ss_pred --------CCceEE-EEEcCCCcEEEEEc-C-----C-----------cEEEEeCC-CcEEEEec--cCCCCcCCCCeeE
Q 011970 313 --------FMTPSA-FIFLYENQLFLTFR-N-----R-----------TVAVWNFR-GELVTSFE--DHLLWHPDCNTNN 363 (474)
Q Consensus 313 --------~~~v~s-v~Fspdg~llaS~s-D-----~-----------tIklWd~~-G~ll~tl~--gH~~~~~~~~v~s 363 (474)
...+|. .++-|+..++--+. + + +|---|.+ ||++-.|. .|..|..|+.-..
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 112332 24445444443332 2 2 34445664 88865444 5777776653333
Q ss_pred EEEC--CCCC---EEEEEecCCCccccccCCCCeEEEEeCCCCeEEE
Q 011970 364 IYIT--SDQD---LIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA 405 (474)
Q Consensus 364 vafS--pDg~---~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~ 405 (474)
+-+. .||+ .++-+.+ +|-+-+-|-.|||.+.
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K-----------~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADR-----------NGFFYVLDRTNGKLLS 339 (527)
T ss_pred EEEEeccCCcEEEEEEEeCC-----------CceEEEEECCCCceec
Confidence 3343 5887 7878877 9999999999999973
No 366
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.36 E-value=3.6 Score=41.62 Aligned_cols=189 Identities=13% Similarity=0.154 Sum_probs=117.3
Q ss_pred eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccc----eeeeccccCceEEEEeC
Q 011970 120 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA----LFESESLKWPGFVEFDD 195 (474)
Q Consensus 120 ~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~----lf~~~~~~~~~~V~Fs~ 195 (474)
.+.+..--+......+.|-.+|..+-|.+.||. -.++..++.+|+..+..+ .|.. .++.-
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~--------S~l~~~d~~tg~~~~~~~l~~~~FgE-------Git~~- 98 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQ--------SSLRKVDLETGKVLQSVPLPPRYFGE-------GITIL- 98 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTE--------EEEEEEETTTSSEEEEEE-TTT--EE-------EEEEE-
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCc--------EEEEEEECCCCcEEEEEECCccccce-------eEEEE-
Confidence 345555334456778899899998888776661 356677889998743222 3332 24443
Q ss_pred CCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEee--c---
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH--L--- 269 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~--h--- 269 (474)
++++..=-=.+++.-+||.++-+.+.+++ ...=|.++ ++|..|..+. + ...|..+|.++-+..+++.- .
T Consensus 99 -~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt-~dg~~Li~SD--G-S~~L~~~dP~~f~~~~~i~V~~~g~p 173 (264)
T PF05096_consen 99 -GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLT-SDGKRLIMSD--G-SSRLYFLDPETFKEVRTIQVTDNGRP 173 (264)
T ss_dssp -TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEE-ECSSCEEEE---S-SSEEEEE-TTT-SEEEEEE-EETTEE
T ss_pred -CCEEEEEEecCCeEEEEccccceEEEEEecCCcceEEE-cCCCEEEEEC--C-ccceEEECCcccceEEEEEEEECCEE
Confidence 44544333467889999999999998886 45667777 5566666652 2 35799999999888887762 1
Q ss_pred CcceeEEEEEecCCCeEEEEe-CCCcEEEEECCCCceEEec-----c-------cc---CCceEEEEEcC-CCcEEEEEc
Q 011970 270 LHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNAELMEVS-----R-------TE---FMTPSAFIFLY-ENQLFLTFR 332 (474)
Q Consensus 270 ~~~v~~V~F~~~~~~~ll~~~-~D~tIkIWDv~tg~~~~~l-----~-------~h---~~~v~sv~Fsp-dg~llaS~s 332 (474)
.....++.++ ++++.|-- ....|-.-|..+|+....+ . .+ .+-...||+.| .+++++||-
T Consensus 174 v~~LNELE~i---~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 174 VSNLNELEYI---NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp ---EEEEEEE---TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCCcEeEEEE---cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 2344667776 68888874 3456666799999987642 1 11 34577899965 566677773
No 367
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.32 E-value=0.66 Score=53.20 Aligned_cols=186 Identities=15% Similarity=0.115 Sum_probs=105.0
Q ss_pred EeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecC
Q 011970 137 YNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK 216 (474)
Q Consensus 137 fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~ 216 (474)
|.|-...+|.+| ||.=+...+.|.- .+|++.... +...+..++.+. |.--+||.|=.-|.+-||...
T Consensus 23 WHPsePlfAVA~------fS~er~GSVtIfa-dtGEPqr~V-----t~P~hatSLCWH-pe~~vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 23 WHPSEPLFAVAS------FSPERGGSVTIFA-DTGEPQRDV-----TYPVHATSLCWH-PEEFVLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred cCCCCceeEEEE------ecCCCCceEEEEe-cCCCCCccc-----ccceehhhhccC-hHHHHHhhccccceeEEEecC
Confidence 344444455444 3444445666643 788873311 112234467887 677789999889999999854
Q ss_pred CCeEEEEEc---CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCC-CeEEEEEe---e-----cCcceeEEEEEecCC
Q 011970 217 NYTMLYSIS---DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIED-GTVLKVFY---H-----LLHRNKKVDFIEQFN 283 (474)
Q Consensus 217 tg~~l~tl~---~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~t-G~~L~tl~---~-----h~~~v~~V~F~~~~~ 283 (474)
+ +..+|.. ...|+-+.||| |+.|++.. .-+.+.+|...- |+. ++.+ | .+++++.+. +++
T Consensus 90 ~-~e~htv~~th~a~i~~l~wS~~G~~l~t~d---~~g~v~lwr~d~~g~~-q~~~~~~hel~~~ltl~cfRL~---~~~ 161 (1416)
T KOG3617|consen 90 T-TETHTVVETHPAPIQGLDWSHDGTVLMTLD---NPGSVHLWRYDVIGEI-QTSNIMQHELNDQLTLWCFRLS---YDR 161 (1416)
T ss_pred C-ceeeeeccCCCCCceeEEecCCCCeEEEcC---CCceeEEEEeeecccc-ccchhhhhHhhceeeEEEEecC---CCh
Confidence 4 4556654 45799999997 67777652 235699997642 332 2222 1 122333333 333
Q ss_pred C------eEEEEeCCCcEE-EEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEecc
Q 011970 284 E------KLLVKQENENLQ-ILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFED 351 (474)
Q Consensus 284 ~------~ll~~~~D~tIk-IWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~g 351 (474)
+ +.++++++.-+- ..+.+-...-+. -.|. =+|+|..|..+. +|||.-=|-.|.+.+..+-
T Consensus 162 Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs-~~ks-------gv~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~ 229 (1416)
T KOG3617|consen 162 EEKFKLAKAAVTGDESALDEPFNWKESLAERS-DEKS-------GVPKGTEFLFAGKSGTVYYVDQNGRQRTVHKL 229 (1416)
T ss_pred HHhhhhhhhhccCchhhhcccccCccchhhcc-cccc-------CCCCCcEEEEEcCCceEEEEcCCCcEEEEEEc
Confidence 2 344445444433 333321110000 1111 158888888777 9999887867888775553
No 368
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.21 E-value=1.1 Score=46.71 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=49.2
Q ss_pred cEEEEECCC--Cce--EEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCCC------c---EEEEeccCC--CCcCC
Q 011970 294 NLQILDVRN--AEL--MEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG------E---LVTSFEDHL--LWHPD 358 (474)
Q Consensus 294 tIkIWDv~t--g~~--~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~G------~---ll~tl~gH~--~~~~~ 358 (474)
.|.+++-.+ |+. .+++......+..++|.++| ++++..++..++.|.+| + ++..|.... ..+
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~-- 124 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHH-- 124 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccc--
Confidence 677776443 332 34455555678899999999 77765566555667643 2 233343321 011
Q ss_pred CCeeEEEECCCCCEEEEEe
Q 011970 359 CNTNNIYITSDQDLIISYC 377 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s 377 (474)
..+.++|.|||.+.++-+
T Consensus 125 -~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 125 -SLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred -cccCceECCCCCEEEecc
Confidence 147899999999988754
No 369
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.13 E-value=1.2 Score=39.31 Aligned_cols=100 Identities=12% Similarity=0.185 Sum_probs=62.1
Q ss_pred cEEEEEEcC----C-ceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC
Q 011970 228 HVQEIKISP----G-IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN 302 (474)
Q Consensus 228 ~V~~vafSp----g-~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t 302 (474)
+|.++++.+ | .-|+++ +.|..||+++ ..+++..+... +.+..+.-+. +++++.+-++|||-++|-..
T Consensus 1 ~V~al~~~d~d~dg~~eLlvG---s~D~~IRvf~--~~e~~~Ei~e~-~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 1 NVTALCLFDFDGDGENELLVG---SDDFEIRVFK--GDEIVAEITET-DKVTSLCSLG--GGRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred CeeEEEEEecCCCCcceEEEe---cCCcEEEEEe--CCcEEEEEecc-cceEEEEEcC--CCEEEEEecCCEEEEEeCcc
Confidence 467777774 2 345554 6689999998 44788888743 5566666443 57888899999999988432
Q ss_pred CceEEeccccCCceEEEEEcC-CC---cEEEEEc-CCcEEE
Q 011970 303 AELMEVSRTEFMTPSAFIFLY-EN---QLFLTFR-NRTVAV 338 (474)
Q Consensus 303 g~~~~~l~~h~~~v~sv~Fsp-dg---~llaS~s-D~tIkl 338 (474)
++-+.-..| .+.++++.+ +| .-|++|. +|.|.+
T Consensus 73 -RlWRiKSK~--~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 73 -RLWRIKSKN--QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred -eeeeeccCC--CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 222221222 356665443 32 2466676 877643
No 370
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.11 E-value=0.52 Score=48.68 Aligned_cols=63 Identities=21% Similarity=0.309 Sum_probs=42.9
Q ss_pred ceEEEEEcCCCcEEEEEcCCcEEEEeCCCcE---EEEeccCCCCcCCCCeeEEEECCC----CCEEEEEec
Q 011970 315 TPSAFIFLYENQLFLTFRNRTVAVWNFRGEL---VTSFEDHLLWHPDCNTNNIYITSD----QDLIISYCK 378 (474)
Q Consensus 315 ~v~sv~Fspdg~llaS~sD~tIklWd~~G~l---l~tl~gH~~~~~~~~v~svafSpD----g~~LaS~s~ 378 (474)
.+++++|.|||++|++-..|.|++.+.+|.. +..+..- ..........++|+|+ +.+-++++.
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v-~~~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEV-FADGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTT-BTSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccc-cccccCCcccceeccccCCCCEEEEEEEc
Confidence 5899999999999998779999999966665 3444210 0001123689999995 787787764
No 371
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.05 E-value=0.0088 Score=67.99 Aligned_cols=101 Identities=13% Similarity=0.170 Sum_probs=68.9
Q ss_pred EeCCCcEEEEECCCCceEEeccccCCceEEEEE-----------cCCCcEEEEEc-CCcEEEEeC--CCc----EEEEec
Q 011970 289 KQENENLQILDVRNAELMEVSRTEFMTPSAFIF-----------LYENQLFLTFR-NRTVAVWNF--RGE----LVTSFE 350 (474)
Q Consensus 289 ~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~F-----------spdg~llaS~s-D~tIklWd~--~G~----ll~tl~ 350 (474)
+-.+++|+|.++.+..- ..+++|..++...+| ||||..||..+ ||.++.|.+ .|+ |+..++
T Consensus 201 ~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk 279 (1283)
T KOG1916|consen 201 GLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK 279 (1283)
T ss_pred ccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccC
Confidence 34788999888665443 556778888776665 89999999998 999999997 475 677888
Q ss_pred cCCCCcCCCCeeEEEECCC---------CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEE
Q 011970 351 DHLLWHPDCNTNNIYITSD---------QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCL 404 (474)
Q Consensus 351 gH~~~~~~~~v~svafSpD---------g~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl 404 (474)
-|... + .|-.+ |..+ =++++++++ ...-+|+|.-..-+|+
T Consensus 280 phd~~-p--~vC~l-c~~~~~~~v~i~~w~~~Itttd----------~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 280 PHDKH-P--RVCWL-CHKQEILVVSIGKWVLRITTTD----------VNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCC-C--ceeee-eccccccCCccceeEEEEeccc----------CCcceeEeeccchhhh
Confidence 77742 1 12222 2222 134555554 2456899987777777
No 372
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.04 E-value=3.8 Score=42.16 Aligned_cols=164 Identities=12% Similarity=0.169 Sum_probs=95.1
Q ss_pred EEEeCCCCeE-EEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceE-EEEecCCCCcc-EEEEecCCCeEEEEE
Q 011970 191 VEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIML-LIFNRSSSHVP-LKILSIEDGTVLKVF 266 (474)
Q Consensus 191 V~Fs~~nGk~-LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~l-a~~s~~s~D~t-IkLWdi~tG~~L~tl 266 (474)
-+|...||++ .|..+.+ |+++..+. ...-..|+|+|-... +.+.. .=+| ..++|..+++.+.++
T Consensus 40 saf~~~dgs~g~a~~~ea----------Gk~v~~~~lpaR~Hgi~~~p~~~ravafAR--rPGtf~~vfD~~~~~~pv~~ 107 (366)
T COG3490 40 SAFDARDGSFGAATLSEA----------GKIVFATALPARGHGIAFHPALPRAVAFAR--RPGTFAMVFDPNGAQEPVTL 107 (366)
T ss_pred eeeeccCCceeEEEEccC----------CceeeeeecccccCCeecCCCCcceEEEEe--cCCceEEEECCCCCcCcEEE
Confidence 4677788876 4444444 45544332 222334566652221 12211 1122 557777777777766
Q ss_pred eec------CcceeEEEEEecCCCeEEEEeCC-----CcEEEEECCCCc-eEEeccccCCceEEEEEcCCCcEEEEEcCC
Q 011970 267 YHL------LHRNKKVDFIEQFNEKLLVKQEN-----ENLQILDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFRNR 334 (474)
Q Consensus 267 ~~h------~~~v~~V~F~~~~~~~ll~~~~D-----~tIkIWDv~tg~-~~~~l~~h~~~v~sv~Fspdg~llaS~sD~ 334 (474)
... .|.+ |+ |+|..|-++-.| |.|-|||.+.+- .+-.+.+|...+-.+.+.+||++++-+. |
T Consensus 108 ~s~~~RHfyGHGv----fs-~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan-G 181 (366)
T COG3490 108 VSQEGRHFYGHGV----FS-PDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN-G 181 (366)
T ss_pred ecccCceeecccc----cC-CCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC-C
Confidence 421 1222 44 667777776433 788999998543 2334678888899999999999998764 3
Q ss_pred cEE--------------------EEe-CCCcEEEEeccCCCC--cCCCCeeEEEECCCCCEEEE
Q 011970 335 TVA--------------------VWN-FRGELVTSFEDHLLW--HPDCNTNNIYITSDQDLIIS 375 (474)
Q Consensus 335 tIk--------------------lWd-~~G~ll~tl~gH~~~--~~~~~v~svafSpDg~~LaS 375 (474)
-|+ +-| .+|+++. .|... .....|+-+++-+||...+-
T Consensus 182 GIethpdfgR~~lNldsMePSlvlld~atG~lie---kh~Lp~~l~~lSiRHld~g~dgtvwfg 242 (366)
T COG3490 182 GIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE---KHTLPASLRQLSIRHLDIGRDGTVWFG 242 (366)
T ss_pred ceecccccCccccchhhcCccEEEEeccccchhh---hccCchhhhhcceeeeeeCCCCcEEEE
Confidence 333 344 2466543 33332 11123688999999988774
No 373
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.93 E-value=2 Score=44.08 Aligned_cols=161 Identities=17% Similarity=0.275 Sum_probs=103.6
Q ss_pred ecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEe
Q 011970 125 NVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYS 204 (474)
Q Consensus 125 ~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~ 204 (474)
.|-+.+ |-++.|||+-++|.++- +. ...-+|=-.+|++..+.||-. +.-+..+++. -+|++.++-
T Consensus 82 ~g~~~n-vS~LTynp~~rtLFav~----n~------p~~iVElt~~GdlirtiPL~g---~~DpE~Ieyi-g~n~fvi~d 146 (316)
T COG3204 82 LGETAN-VSSLTYNPDTRTLFAVT----NK------PAAIVELTKEGDLIRTIPLTG---FSDPETIEYI-GGNQFVIVD 146 (316)
T ss_pred cccccc-ccceeeCCCcceEEEec----CC------CceEEEEecCCceEEEecccc---cCChhHeEEe-cCCEEEEEe
Confidence 443444 99999999999998854 22 233355558999988877655 3446678887 689999998
Q ss_pred cCCCcEEEeecCCCeEEEE-------Ec-----CCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEEeec--
Q 011970 205 AQDSIYKVFDLKNYTMLYS-------IS-----DKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHL-- 269 (474)
Q Consensus 205 s~D~tiKlWdl~tg~~l~t-------l~-----~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h-- 269 (474)
-.|+++-+..+...+.... |. ...-..+|+.| +.+|..+ .+-.|++|..++.+. ..+..|
T Consensus 147 ER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~a---KEr~P~~I~~~~~~~--~~l~~~~~ 221 (316)
T COG3204 147 ERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVA---KERNPIGIFEVTQSP--SSLSVHAS 221 (316)
T ss_pred hhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEE---EccCCcEEEEEecCC--cccccccc
Confidence 8999999998876543221 21 12467899998 6676665 335788888775333 122211
Q ss_pred ----------CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceE
Q 011970 270 ----------LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELM 306 (474)
Q Consensus 270 ----------~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~ 306 (474)
..-+.++.|.++.|..|+-+.|++-+.--|.. |+.+
T Consensus 222 ~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~ 267 (316)
T COG3204 222 LDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVI 267 (316)
T ss_pred cCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCee
Confidence 12345566665544444447788888877743 4433
No 374
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.91 E-value=0.66 Score=52.75 Aligned_cols=151 Identities=9% Similarity=-0.005 Sum_probs=100.0
Q ss_pred cEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEE
Q 011970 228 HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELME 307 (474)
Q Consensus 228 ~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~ 307 (474)
.+.+.+++ +..++-+ ..++-|.+.+. .|+. ++.-.|... .-.|+++++++.||+|.|--+-+.+...
T Consensus 41 ~is~~av~-~~~~~~G---tH~g~v~~~~~-~~~~-~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 41 AISCCAVH-DKFFALG---THRGAVYLTTC-QGNP-KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred HHHHHHhh-cceeeec---cccceEEEEec-CCcc-ccccccccc-------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 44555555 3444443 33567777774 5565 443333322 2458999999999999999998887665
Q ss_pred eccccCCceEEEEEcCC-----CcEEEEEc-CCcEEEEeCC--CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecC
Q 011970 308 VSRTEFMTPSAFIFLYE-----NQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 379 (474)
Q Consensus 308 ~l~~h~~~v~sv~Fspd-----g~llaS~s-D~tIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~ 379 (474)
+..=+ ..+.+|+++|| .+.+++|+ -| +-+..-+ |+.... ..|..- ..|.+|++ .|.+||=++
T Consensus 108 ~~df~-rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~e---G~I~~i~W--~g~lIAWan-- 177 (846)
T KOG2066|consen 108 QYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGE---GPIHSIKW--RGNLIAWAN-- 177 (846)
T ss_pred eEecC-CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCc---cceEEEEe--cCcEEEEec--
Confidence 43322 47889999998 66788888 55 6677654 554333 223221 12677877 799999875
Q ss_pred CCccccccCCCCeEEEEeCCCCeEEEEecCCC
Q 011970 380 EPEDQWMEGSAGSINVSSILTGKCLAKINATN 411 (474)
Q Consensus 380 ~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~ 411 (474)
|--||+.|+.+++-+.-++.-.
T Consensus 178 ----------d~Gv~vyd~~~~~~l~~i~~p~ 199 (846)
T KOG2066|consen 178 ----------DDGVKVYDTPTRQRLTNIPPPS 199 (846)
T ss_pred ----------CCCcEEEeccccceeeccCCCC
Confidence 4558999999999988776543
No 375
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.82 E-value=0.53 Score=54.25 Aligned_cols=127 Identities=13% Similarity=0.117 Sum_probs=84.5
Q ss_pred eCCCcEEEEECCCCceEEeccccCCc-eEEEEEc------CCCcEEEEEcCCcEEEEeCC--CcEEEEeccCCCCcCCCC
Q 011970 290 QENENLQILDVRNAELMEVSRTEFMT-PSAFIFL------YENQLFLTFRNRTVAVWNFR--GELVTSFEDHLLWHPDCN 360 (474)
Q Consensus 290 ~~D~tIkIWDv~tg~~~~~l~~h~~~-v~sv~Fs------pdg~llaS~sD~tIklWd~~--G~ll~tl~gH~~~~~~~~ 360 (474)
.....|.--|+.+|+.++....|.+. |..++=. ...+.|+.-+++.+-.||.+ |..+..-+.|.- ....+
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~ 579 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNN 579 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCCC
Confidence 46688888999999999987777655 4444321 13466777778888899985 643332233432 23334
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEE-EecCCCCCCCCccccCCCCCCccccccccccccc
Q 011970 361 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLA-KINATNCSPKVDDELGSSSTGKSKKLNKSSYIRS 439 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~-tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (474)
..+++-+.+|.+.+ ||. +|-|||+| ..|+--+ .|.|-.
T Consensus 580 Fs~~aTt~~G~iav-gs~-----------~G~IRLyd-~~g~~AKT~lp~lG---------------------------- 618 (794)
T PF08553_consen 580 FSCFATTEDGYIAV-GSN-----------KGDIRLYD-RLGKRAKTALPGLG---------------------------- 618 (794)
T ss_pred ceEEEecCCceEEE-EeC-----------CCcEEeec-ccchhhhhcCCCCC----------------------------
Confidence 67788888888655 554 99999999 4553222 222222
Q ss_pred cccccccCEEEEEEcCCCCEEEEEc
Q 011970 440 TVGEALEDITSLFYDEERNEIYTGN 464 (474)
Q Consensus 440 ~~~~~l~~V~slafSpDg~~LaSgs 464 (474)
++|..|.-+.||++|+...
T Consensus 619 ------~pI~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 619 ------DPIIGIDVTADGKWILATC 637 (794)
T ss_pred ------CCeeEEEecCCCcEEEEee
Confidence 1899999999999966443
No 376
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.068 Score=56.33 Aligned_cols=99 Identities=10% Similarity=0.048 Sum_probs=74.0
Q ss_pred EEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEE
Q 011970 252 LKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTF 331 (474)
Q Consensus 252 IkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~ 331 (474)
++..+-.+=+.++-+.+|..-|+.++|+|...+.+..++-+.+|+|-|+++..+......| ..+|+++|--|..-++-+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 5555555545555566677788999998544456777899999999999999999888777 689999998655655555
Q ss_pred c--CCcEEEEeCC--CcEEEEecc
Q 011970 332 R--NRTVAVWNFR--GELVTSFED 351 (474)
Q Consensus 332 s--D~tIklWd~~--G~ll~tl~g 351 (474)
+ +|.|-|+|++ -..+..|.+
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a 277 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVA 277 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhh
Confidence 5 9999999984 334444444
No 377
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.34 E-value=1.7 Score=47.17 Aligned_cols=54 Identities=6% Similarity=0.149 Sum_probs=39.3
Q ss_pred cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCe--EEEEEc-------CCcEEEEEEcCCc
Q 011970 184 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS-------DKHVQEIKISPGI 238 (474)
Q Consensus 184 ~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~--~l~tl~-------~~~V~~vafSpg~ 238 (474)
.+..|+.++|. |||.+|++--..|.|++++..++. .+..+. ......|+|+|+-
T Consensus 28 GL~~Pw~mafl-PDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWG-PDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEc-CCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 37788899997 799999876556999999876553 222222 2457899999874
No 378
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.33 E-value=3 Score=46.84 Aligned_cols=179 Identities=6% Similarity=0.015 Sum_probs=101.3
Q ss_pred cCceEEEEeCCCCeEEEEec------CCCcEEEeecC-CCeEEEEEcCCcEEEEEEcCC-ceEEEEecC---------CC
Q 011970 186 KWPGFVEFDDVNGKVLTYSA------QDSIYKVFDLK-NYTMLYSISDKHVQEIKISPG-IMLLIFNRS---------SS 248 (474)
Q Consensus 186 ~~~~~V~Fs~~nGk~LaS~s------~D~tiKlWdl~-tg~~l~tl~~~~V~~vafSpg-~~la~~s~~---------s~ 248 (474)
..+...++| |||+.+|+-. .|+.-.||=.. .+....-..+.....-.|||+ ..+++.... ..
T Consensus 350 ~~vsspaiS-pdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 350 GNITSAALS-RSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred cCcccceEC-CCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 456678998 7999998876 35555566432 333322233445777888885 656555321 11
Q ss_pred CccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEE---EECCCCceEEe-----cc-ccCCceEEE
Q 011970 249 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQI---LDVRNAELMEV-----SR-TEFMTPSAF 319 (474)
Q Consensus 249 D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkI---WDv~tg~~~~~-----l~-~h~~~v~sv 319 (474)
...+.+.++..|+.-+.+ ...+.++.++ |||.+++.-. ++.|.+ =.-..|+ .+. +. +-...+.++
T Consensus 429 ~gql~~~~vd~ge~~~~~---~g~Issl~wS-pDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 429 TGQLARTPVDASAVASRV---PGPISELQLS-RDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CceEEEEeccCchhhhcc---CCCcCeEEEC-CCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCccccc
Confidence 223433466555554322 3568899987 7888888755 356655 4444565 221 22 222346789
Q ss_pred EEcCCCcEEEEEcCCcEEEEeC--CCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEE
Q 011970 320 IFLYENQLFLTFRNRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 375 (474)
Q Consensus 320 ~Fspdg~llaS~sD~tIklWd~--~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS 375 (474)
.|.+++.+++...+....+|.+ +|..-..+.+.. .+. .+.+|+=+|+ .+.+.
T Consensus 503 ~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n-~~~--~v~~vaa~~~-~iyv~ 556 (591)
T PRK13616 503 DWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRN-LSA--PVVAVAASPS-TVYVT 556 (591)
T ss_pred eEecCCEEEEEecCCCCceEEEecCCccccccCCCC-ccC--ceEEEecCCc-eEEEE
Confidence 9999999876554444456765 576544333321 111 2556766653 44443
No 379
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.17 E-value=7.2 Score=45.08 Aligned_cols=198 Identities=10% Similarity=0.035 Sum_probs=113.7
Q ss_pred EEeCCCCeEEEEecCCCcEEEeecCCCe-EEEEEcC--Cc-EEEEEEcCC-ceEEEEecCCCCc--cEEEEecCCC----
Q 011970 192 EFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD--KH-VQEIKISPG-IMLLIFNRSSSHV--PLKILSIEDG---- 260 (474)
Q Consensus 192 ~Fs~~nGk~LaS~s~D~tiKlWdl~tg~-~l~tl~~--~~-V~~vafSpg-~~la~~s~~s~D~--tIkLWdi~tG---- 260 (474)
.|+ ++|..+|-|+.||.| |=+..+- .++.+.. .. |+-+-.-.+ ..|++-+.+..-+ .||+||++.-
T Consensus 30 c~~-s~~~~vvigt~~G~V--~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 30 CCS-SSTGSVVIGTADGRV--VILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred EEc-CCCceEEEeeccccE--EEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 566 688899999998855 5554544 3355542 23 444444443 3555443322112 5999998742
Q ss_pred --eEEEEEe--ec-----CcceeEEEEEecCCCeEEEEeCCCcEEEE--ECCC--CceEEeccccCCceEEEEEcCCCcE
Q 011970 261 --TVLKVFY--HL-----LHRNKKVDFIEQFNEKLLVKQENENLQIL--DVRN--AELMEVSRTEFMTPSAFIFLYENQL 327 (474)
Q Consensus 261 --~~L~tl~--~h-----~~~v~~V~F~~~~~~~ll~~~~D~tIkIW--Dv~t--g~~~~~l~~h~~~v~sv~Fspdg~l 327 (474)
+|+.+.. .| ..++..++.+ .+-..+++|=.||.|-++ |+.. |.-.........+|+.++|..|++.
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs-~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVS-EDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEE-ccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 3552222 21 2234555554 334455556688888877 3222 1112222334468999999999988
Q ss_pred EEEEc-CCcEEEEeCCCcE--EEEeccCCCCcCCCCeeEEEECCCCC-EEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 328 FLTFR-NRTVAVWNFRGEL--VTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 328 laS~s-D~tIklWd~~G~l--l~tl~gH~~~~~~~~v~svafSpDg~-~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
++=.. -..|.++.++|+- +.++..|... ++...|++--. +|+.+ +.-+-++|...-+.
T Consensus 186 ~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~-----lnCss~~~~t~qfIca~-------------~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSGRTPSLKVLDNNGIS-----LNCSSFSDGTYQFICAG-------------SEFLYFYDSDGRGP 247 (933)
T ss_pred eEEEEecceeEEEEecCCCcceeeeccCCcc-----ceeeecCCCCccEEEec-------------CceEEEEcCCCcce
Confidence 32222 6679999998665 6667777654 67777876544 45443 45677777643333
Q ss_pred EEEec-CCC
Q 011970 404 LAKIN-ATN 411 (474)
Q Consensus 404 l~tl~-gH~ 411 (474)
--++. ||.
T Consensus 248 cfaf~~g~k 256 (933)
T KOG2114|consen 248 CFAFEVGEK 256 (933)
T ss_pred eeeecCCCe
Confidence 33454 555
No 380
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.74 E-value=0.38 Score=53.90 Aligned_cols=110 Identities=14% Similarity=0.065 Sum_probs=74.5
Q ss_pred ceEEEEEcCCCcEEEEEc-CCcEEEEeCCC-cE-EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 011970 315 TPSAFIFLYENQLFLTFR-NRTVAVWNFRG-EL-VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 391 (474)
Q Consensus 315 ~v~sv~Fspdg~llaS~s-D~tIklWd~~G-~l-l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg 391 (474)
.+.--++.-.+++++-|+ -|.+-|++-.| +. +...++-... +-.+.+|++..++|.|+. .|
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~-----~~~~~vs~~e~lvAagt~-----------~g 98 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGI-----TCVRSVSSVEYLVAAGTA-----------SG 98 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccce-----EEEEEecchhHhhhhhcC-----------Cc
Confidence 344445677788888887 89999999864 43 3344442222 457888999999998875 67
Q ss_pred eEEEEeCCCCeE---EEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCc
Q 011970 392 SINVSSILTGKC---LAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 468 (474)
Q Consensus 392 tIklWdi~tG~c---l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dgt 468 (474)
.|-+.-++.++- +..=.+|.. +-..|+++.||+||..+|+|..-|+
T Consensus 99 ~V~v~ql~~~~p~~~~~~t~~d~~-------------------------------~~~rVTal~Ws~~~~k~ysGD~~Gk 147 (726)
T KOG3621|consen 99 RVSVFQLNKELPRDLDYVTPCDKS-------------------------------HKCRVTALEWSKNGMKLYSGDSQGK 147 (726)
T ss_pred eEEeehhhccCCCcceeecccccc-------------------------------CCceEEEEEecccccEEeecCCCce
Confidence 777776644221 111111111 1128999999999999999999999
Q ss_pred EEE
Q 011970 469 VHV 471 (474)
Q Consensus 469 Vkl 471 (474)
|.+
T Consensus 148 v~~ 150 (726)
T KOG3621|consen 148 VVL 150 (726)
T ss_pred EEE
Confidence 875
No 381
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.73 E-value=0.12 Score=58.93 Aligned_cols=102 Identities=15% Similarity=0.207 Sum_probs=74.6
Q ss_pred EcCCCcEEEEE--c---CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEE
Q 011970 321 FLYENQLFLTF--R---NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINV 395 (474)
Q Consensus 321 Fspdg~llaS~--s---D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIkl 395 (474)
|.|--.+||.+ | -|.|.|+--+||.-+..+- ++ -+.+++++|.--.||+|=. -|-+-+
T Consensus 23 WHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~---P~---hatSLCWHpe~~vLa~gwe-----------~g~~~v 85 (1416)
T KOG3617|consen 23 WHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTY---PV---HATSLCWHPEEFVLAQGWE-----------MGVSDV 85 (1416)
T ss_pred cCCCCceeEEEEecCCCCceEEEEecCCCCCccccc---ce---ehhhhccChHHHHHhhccc-----------cceeEE
Confidence 45555555433 2 5688888767886442221 11 1467999999999998754 788999
Q ss_pred EeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 396 SSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 396 Wdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
|+..+-+--..-..|.. +|.-|.|||||..|.|+..=|.|++|.
T Consensus 86 ~~~~~~e~htv~~th~a----------------------------------~i~~l~wS~~G~~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 86 QKTNTTETHTVVETHPA----------------------------------PIQGLDWSHDGTVLMTLDNPGSVHLWR 129 (1416)
T ss_pred EecCCceeeeeccCCCC----------------------------------CceeEEecCCCCeEEEcCCCceeEEEE
Confidence 99766555444455664 889999999999999999999999996
No 382
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.61 E-value=0.32 Score=56.82 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=49.3
Q ss_pred EEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEE
Q 011970 328 FLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 328 laS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~t 406 (474)
++-++ -|.|-+-|.+|++-. | |.+-.....|.+++|+-||.+++-|-. +|-|.+||+.+++.++.
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~-~--~~ne~v~~~Vtsvafn~dg~~l~~G~~-----------~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGP-L--HQNERVQGPVTSVAFNQDGSLLLAGLG-----------DGHVTVWDMHRAKILKV 167 (1206)
T ss_pred EEEEcCchhhhhhhhhcccch-h--hcCCccCCcceeeEecCCCceeccccC-----------CCcEEEEEccCCcceee
Confidence 34444 455656666555321 0 111111123799999999999998765 99999999999999999
Q ss_pred ecCCCC
Q 011970 407 INATNC 412 (474)
Q Consensus 407 l~gH~~ 412 (474)
|..|..
T Consensus 168 i~e~~a 173 (1206)
T KOG2079|consen 168 ITEHGA 173 (1206)
T ss_pred eeecCC
Confidence 988874
No 383
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.51 E-value=3.1 Score=43.37 Aligned_cols=118 Identities=15% Similarity=0.100 Sum_probs=67.4
Q ss_pred cEEEEecC--CCeEE--EEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCC-C----c---eEEeccc----cCC
Q 011970 251 PLKILSIE--DGTVL--KVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-A----E---LMEVSRT----EFM 314 (474)
Q Consensus 251 tIkLWdi~--tG~~L--~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t-g----~---~~~~l~~----h~~ 314 (474)
.|.+++-. +|+.. ..|.........++|.+ ++ +.+++.+.-.++.|... + + ++..+.. +..
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~--~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~ 124 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAV--GG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHH 124 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEec--CC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccc
Confidence 45555433 35432 34544345557788763 44 77776666555656532 1 2 2222322 234
Q ss_pred ceEEEEEcCCCcEEEEEcC--------------------CcEEEEeCCCcEEEEe-ccCCCCcCCCCeeEEEECCCCCEE
Q 011970 315 TPSAFIFLYENQLFLTFRN--------------------RTVAVWNFRGELVTSF-EDHLLWHPDCNTNNIYITSDQDLI 373 (474)
Q Consensus 315 ~v~sv~Fspdg~llaS~sD--------------------~tIklWd~~G~ll~tl-~gH~~~~~~~~v~svafSpDg~~L 373 (474)
.+..++|.|||.+.++-++ +.|--.|.+|..+..+ .|+.. .+.++|+|+|+++
T Consensus 125 ~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rn------p~Gl~~d~~G~l~ 198 (367)
T TIGR02604 125 SLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQN------PYGHSVDSWGDVF 198 (367)
T ss_pred cccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCC------CccceECCCCCEE
Confidence 5788999999999886542 2233344444433333 23332 4789999999998
Q ss_pred EEEe
Q 011970 374 ISYC 377 (474)
Q Consensus 374 aS~s 377 (474)
++-.
T Consensus 199 ~tdn 202 (367)
T TIGR02604 199 FCDN 202 (367)
T ss_pred EEcc
Confidence 8743
No 384
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.37 E-value=0.32 Score=56.80 Aligned_cols=93 Identities=11% Similarity=0.115 Sum_probs=65.7
Q ss_pred CeEEEEeCCCcEEEEECCCCceE-EeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCC
Q 011970 284 EKLLVKQENENLQILDVRNAELM-EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCN 360 (474)
Q Consensus 284 ~~ll~~~~D~tIkIWDv~tg~~~-~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~ 360 (474)
.-++++...|.+-+-|+.+.-+- ..-..-+.+|.+++|+.||.+++.|= +|-|++||.+ ++.++.+..|..++..
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~-- 177 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG-- 177 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce--
Confidence 44666666777776665443221 11122346899999999999999986 9999999995 8999999988876532
Q ss_pred eeEEEECCCCCEEEEEec
Q 011970 361 TNNIYITSDQDLIISYCK 378 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~ 378 (474)
|--+-.+.++..+.++..
T Consensus 178 vi~v~~t~~nS~llt~D~ 195 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDT 195 (1206)
T ss_pred EEEEEEeCCCcEEEEccC
Confidence 445555667777777643
No 385
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=4.7 Score=39.83 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=24.5
Q ss_pred EEEeCCCCeEEEEecC--CCcEEEeecCCCeEEEEE
Q 011970 191 VEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSI 224 (474)
Q Consensus 191 V~Fs~~nGk~LaS~s~--D~tiKlWdl~tg~~l~tl 224 (474)
++.. ||.++.|.+. .+.|++|||.+|+.+.+-
T Consensus 51 L~~~--~g~i~esTG~yg~S~ir~~~L~~gq~~~s~ 84 (262)
T COG3823 51 LEYL--DGHILESTGLYGFSKIRVSDLTTGQEIFSE 84 (262)
T ss_pred eeee--CCEEEEeccccccceeEEEeccCceEEEEe
Confidence 5664 7888888775 557999999999876543
No 386
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.34 E-value=20 Score=41.70 Aligned_cols=207 Identities=14% Similarity=0.146 Sum_probs=115.2
Q ss_pred CceEEEEecCCCCccEEEEecCCCeEEEEEeecCc--------ceeEEEEEec---------------CCCeEEEEeCCC
Q 011970 237 GIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLH--------RNKKVDFIEQ---------------FNEKLLVKQENE 293 (474)
Q Consensus 237 g~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~--------~v~~V~F~~~---------------~~~~ll~~~~D~ 293 (474)
|+++..++ .++.|.=.|.+||+.+-.+.-... ..+.|++.+. .+++++.+..|+
T Consensus 194 gg~lYv~t---~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCT---PHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA 270 (764)
T ss_pred CCEEEEEC---CCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC
Confidence 55555542 256777888899999887763211 1244555321 245888888999
Q ss_pred cEEEEECCCCceEEeccccCCce-------------EEEEEc---CCCcEEEEEc----------CCcEEEEeC-CCcEE
Q 011970 294 NLQILDVRNAELMEVSRTEFMTP-------------SAFIFL---YENQLFLTFR----------NRTVAVWNF-RGELV 346 (474)
Q Consensus 294 tIkIWDv~tg~~~~~l~~h~~~v-------------~sv~Fs---pdg~llaS~s----------D~tIklWd~-~G~ll 346 (474)
.+--.|.+||+.+..+..+. .+ ..+.-+ .++.+++.++ +|.|+-.|. +|+++
T Consensus 271 ~LiALDA~TGk~~W~fg~~G-~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGNNG-TVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecCCC-ceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 99999999999875432210 00 011111 2566666543 478999999 59998
Q ss_pred EEecc-CC----------CCcCC-CCe-eEEEECCCCCEEEEEecCCCcccc-------ccCCCCeEEEEeCCCCeEEEE
Q 011970 347 TSFED-HL----------LWHPD-CNT-NNIYITSDQDLIISYCKAEPEDQW-------MEGSAGSINVSSILTGKCLAK 406 (474)
Q Consensus 347 ~tl~g-H~----------~~~~~-~~v-~svafSpDg~~LaS~s~~~~~~~~-------~~s~DgtIklWdi~tG~cl~t 406 (474)
-.+.- +. .|..+ .++ ...++.|+-.++.-+.....-|.+ ...-.++|-=-|+.|||....
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 76641 00 00000 011 124455554444432211111110 112246777889999999988
Q ss_pred ecC-CCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcC-CCC---EEEEEcCCCcEEEcc
Q 011970 407 INA-TNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDE-ERN---EIYTGNRHGLVHVWS 473 (474)
Q Consensus 407 l~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSp-Dg~---~LaSgs~DgtVklWd 473 (474)
++. |. +.|++....+ .+ =+.+.- ||+ .|+.++.+|.+.+-|
T Consensus 430 ~Q~~~h---------------------D~WD~D~~~~----p~-L~d~~~~~G~~~~~v~~~~K~G~~~vlD 475 (764)
T TIGR03074 430 FQTVHH---------------------DLWDMDVPAQ----PS-LVDLPDADGTTVPALVAPTKQGQIYVLD 475 (764)
T ss_pred ecccCC---------------------ccccccccCC----ce-EEeeecCCCcEeeEEEEECCCCEEEEEE
Confidence 876 33 2455433322 22 122322 664 788899998887654
No 387
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.27 E-value=3 Score=45.38 Aligned_cols=73 Identities=22% Similarity=0.212 Sum_probs=46.7
Q ss_pred EEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-Cc--EEEEeccCCCCcCCCCeeEEEECCCC-------CEEE
Q 011970 306 MEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQ-------DLII 374 (474)
Q Consensus 306 ~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~--ll~tl~gH~~~~~~~~v~svafSpDg-------~~La 374 (474)
++++......+++++|.|||++|++-. .|.|++++-. +. .+..+.+-..-........|+|+||= .+-+
T Consensus 22 ~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYv 101 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYI 101 (454)
T ss_pred EEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEE
Confidence 344555667899999999999999998 6999999864 32 23223210000000125789999984 3556
Q ss_pred EEec
Q 011970 375 SYCK 378 (474)
Q Consensus 375 S~s~ 378 (474)
+++.
T Consensus 102 syt~ 105 (454)
T TIGR03606 102 SYTY 105 (454)
T ss_pred EEec
Confidence 6654
No 388
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.14 E-value=5.6 Score=45.93 Aligned_cols=140 Identities=17% Similarity=0.192 Sum_probs=83.0
Q ss_pred CccEEEEecCCC-eEEEEEeecCcceeEEEEEecCCC--eEEEEeCCC-----cEEEEECCCC------ceE---Eecc-
Q 011970 249 HVPLKILSIEDG-TVLKVFYHLLHRNKKVDFIEQFNE--KLLVKQENE-----NLQILDVRNA------ELM---EVSR- 310 (474)
Q Consensus 249 D~tIkLWdi~tG-~~L~tl~~h~~~v~~V~F~~~~~~--~ll~~~~D~-----tIkIWDv~tg------~~~---~~l~- 310 (474)
|+.|-+.+ .+ +.++.|..+.+. -|+|.-..++ .|++-++|+ .|||||+..- +|+ +...
T Consensus 44 ~G~V~~Ln--~s~~~~~~fqa~~~s--iv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~ 119 (933)
T KOG2114|consen 44 DGRVVILN--SSFQLIRGFQAYEQS--IVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTI 119 (933)
T ss_pred cccEEEec--ccceeeehheecchh--hhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeecc
Confidence 44444444 33 334667655444 2444323344 444446654 5899998743 455 2221
Q ss_pred ---ccCCceEEEEEcCCCcEEEEEc-CCcEEEEeC---C--CcEEEEeccCCCCcCCCCeeEEEECCCCCE--EEEEecC
Q 011970 311 ---TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF---R--GELVTSFEDHLLWHPDCNTNNIYITSDQDL--IISYCKA 379 (474)
Q Consensus 311 ---~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~---~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~--LaS~s~~ 379 (474)
.....++.++.|-+=+.+|.|= ||+|-...- + |. +.---|.+.- .|.+++|-.||+. .|+.
T Consensus 120 ~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs--r~~~~~~~~~---pITgL~~~~d~~s~lFv~T--- 191 (933)
T KOG2114|consen 120 KNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS--RQDYSHRGKE---PITGLALRSDGKSVLFVAT--- 191 (933)
T ss_pred CCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc--ceeeeccCCC---CceeeEEecCCceeEEEEe---
Confidence 2345667788898999999987 999977652 1 22 1222233332 3789999999987 3322
Q ss_pred CCccccccCCCCeEEEEeCCCCeE--EEEecCCC
Q 011970 380 EPEDQWMEGSAGSINVSSILTGKC--LAKINATN 411 (474)
Q Consensus 380 ~~~~~~~~s~DgtIklWdi~tG~c--l~tl~gH~ 411 (474)
-..|+++.+. |+- +.++..|.
T Consensus 192 ----------t~~V~~y~l~-gr~p~~~~ld~~G 214 (933)
T KOG2114|consen 192 ----------TEQVMLYSLS-GRTPSLKVLDNNG 214 (933)
T ss_pred ----------cceeEEEEec-CCCcceeeeccCC
Confidence 4679999974 776 55555554
No 389
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.78 E-value=8.7 Score=41.09 Aligned_cols=144 Identities=12% Similarity=0.085 Sum_probs=82.6
Q ss_pred cCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeC-CCcEE--EEeccCCCCcC
Q 011970 281 QFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELV--TSFEDHLLWHP 357 (474)
Q Consensus 281 ~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~-~G~ll--~tl~gH~~~~~ 357 (474)
+++..++++....-++-||--...-..........+.++.|.+||.+++.+.+|.+ +|.. .|+.- .+|..-.....
T Consensus 248 ~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~ 326 (398)
T PLN00033 248 PDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSR 326 (398)
T ss_pred CCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccceeecccCCC
Confidence 44444444544444455552211112222333456889999999999999888876 5555 36421 12321110000
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccc
Q 011970 358 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYI 437 (474)
Q Consensus 358 ~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (474)
...+.+++|.+|++.+++|- .|.|.... .-|+--...+.-+.
T Consensus 327 ~~~l~~v~~~~d~~~~a~G~------------~G~v~~s~-D~G~tW~~~~~~~~------------------------- 368 (398)
T PLN00033 327 GFGILDVGYRSKKEAWAAGG------------SGILLRST-DGGKSWKRDKGADN------------------------- 368 (398)
T ss_pred CcceEEEEEcCCCcEEEEEC------------CCcEEEeC-CCCcceeEccccCC-------------------------
Confidence 01267899999999999863 68776664 45665444332111
Q ss_pred cccccccccCEEEEEEcCCCCEEEEEcCCCcEE
Q 011970 438 RSTVGEALEDITSLFYDEERNEIYTGNRHGLVH 470 (474)
Q Consensus 438 ~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVk 470 (474)
.-...+++.|.++++-.++|. +|.|-
T Consensus 369 ------~~~~ly~v~f~~~~~g~~~G~-~G~il 394 (398)
T PLN00033 369 ------IAANLYSVKFFDDKKGFVLGN-DGVLL 394 (398)
T ss_pred ------CCcceeEEEEcCCCceEEEeC-CcEEE
Confidence 012688999998887777664 66653
No 390
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.36 E-value=9.2 Score=40.91 Aligned_cols=139 Identities=10% Similarity=0.040 Sum_probs=84.6
Q ss_pred EEEeCCCCeEEEEecCCCcEEEeecCCCeEE---EEE-cCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeE----
Q 011970 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTML---YSI-SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTV---- 262 (474)
Q Consensus 191 V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l---~tl-~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~---- 262 (474)
+..+ +||++++.+..-..++-|| .|... ... ....+.++.|.+++.++.... .+. -+|...+|+.
T Consensus 244 v~~~-~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~---~G~-l~~S~d~G~~~~~~ 316 (398)
T PLN00033 244 VNRS-PDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLTR---GGG-LYVSKGTGLTEEDF 316 (398)
T ss_pred EEEc-CCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEeC---Cce-EEEecCCCCccccc
Confidence 3444 6788888776665566666 33321 222 245789999997554444432 233 3666667752
Q ss_pred -EEEEeec--CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc---ccCCceEEEEEcCCCcEEEEEcCCcE
Q 011970 263 -LKVFYHL--LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR---TEFMTPSAFIFLYENQLFLTFRNRTV 336 (474)
Q Consensus 263 -L~tl~~h--~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~---~h~~~v~sv~Fspdg~llaS~sD~tI 336 (474)
+...... ...+..|.|. +++.+++.+.+|.+.... ..|+.-+... .-....+++.|.++++.++++.+|.|
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~--~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~i 393 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYR--SKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVL 393 (398)
T ss_pred ceeecccCCCCcceEEEEEc--CCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEE
Confidence 2222211 1236778875 357788888888887775 4555433222 22345789999999999999988877
Q ss_pred EEE
Q 011970 337 AVW 339 (474)
Q Consensus 337 klW 339 (474)
--|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 443
No 391
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.13 E-value=20 Score=36.85 Aligned_cols=64 Identities=6% Similarity=0.214 Sum_probs=48.0
Q ss_pred ceEEEEEcCCCcEEEEEc-C------CcEEEEeCCCcEEEEec---cC-------CCCcCCCCeeEEEECCCCCEEEEEe
Q 011970 315 TPSAFIFLYENQLFLTFR-N------RTVAVWNFRGELVTSFE---DH-------LLWHPDCNTNNIYITSDQDLIISYC 377 (474)
Q Consensus 315 ~v~sv~Fspdg~llaS~s-D------~tIklWd~~G~ll~tl~---gH-------~~~~~~~~v~svafSpDg~~LaS~s 377 (474)
.+.++++.++|.+++|+- + ..|.-.+.+|+.+..+. .. ..+..|-...+++++|||+.|....
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 556888999999999987 8 77877777798877662 21 3334455678999999999777665
Q ss_pred c
Q 011970 378 K 378 (474)
Q Consensus 378 ~ 378 (474)
.
T Consensus 166 E 166 (326)
T PF13449_consen 166 E 166 (326)
T ss_pred C
Confidence 5
No 392
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=91.08 E-value=0.65 Score=45.94 Aligned_cols=104 Identities=7% Similarity=0.032 Sum_probs=60.8
Q ss_pred CCeEEEEeCCCcEEEEECCC-CceEEec-cccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCC
Q 011970 283 NEKLLVKQENENLQILDVRN-AELMEVS-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPD 358 (474)
Q Consensus 283 ~~~ll~~~~D~tIkIWDv~t-g~~~~~l-~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~ 358 (474)
+.+++++..|+.|.+|+..- |...... .+..+...-|.-..++.+..++. |+.|+.|+.. ++-+-.--.|..- +
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~-~- 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE-S- 147 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC-C-
Confidence 46788899999999998651 2221111 11222222233345666777777 9999999996 7666555555521 1
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCC
Q 011970 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSIL 399 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~ 399 (474)
+.....+.-++.|+++- -|.|..+|.||+.
T Consensus 148 --~e~~ivv~sd~~i~~a~---------~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 148 --GEELIVVGSDEFLKIAD---------TSHDRVLKKWNVE 177 (238)
T ss_pred --cceeEEecCCceEEeec---------cccchhhhhcchh
Confidence 23344444555566541 1337778888764
No 393
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.93 E-value=18 Score=35.91 Aligned_cols=170 Identities=16% Similarity=0.178 Sum_probs=94.8
Q ss_pred cceeeEeecCCC---ceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEe
Q 011970 118 NRRICFLNVSPD---EVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFD 194 (474)
Q Consensus 118 g~~l~~l~g~~~---~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs 194 (474)
+....-+.|... ..+.+.+.||||+.+|.+. ..++ ...|+-...|.... .+.+...+. .-+|+
T Consensus 9 ~~~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~--~~~~-------~~~L~~~~~~~~~~--~~~~g~~l~---~PS~d 74 (253)
T PF10647_consen 9 GGGVTPVPGALGEGGYDVTSPAVSPDGSRVAAVS--EGDG-------GRSLYVGPAGGPVR--PVLTGGSLT---RPSWD 74 (253)
T ss_pred CCceeECCCCcCcCCccccceEECCCCCeEEEEE--EcCC-------CCEEEEEcCCCcce--eeccCCccc---ccccc
Confidence 444444444322 2589999999999998876 2222 22333333333211 122222233 45787
Q ss_pred CCCCeEEEEecCCCcEEEee-cCCCeEE-EEEc--C-C-cEEEEEEcC-CceEEEEecCCCCccEEEEecC---CC--eE
Q 011970 195 DVNGKVLTYSAQDSIYKVFD-LKNYTML-YSIS--D-K-HVQEIKISP-GIMLLIFNRSSSHVPLKILSIE---DG--TV 262 (474)
Q Consensus 195 ~~nGk~LaS~s~D~tiKlWd-l~tg~~l-~tl~--~-~-~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~---tG--~~ 262 (474)
++|.+.+....+...+++. ..+|+.. ..+. . . .|.++++|| |.++|.......+..|.+=-|. +| ..
T Consensus 75 -~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~ 153 (253)
T PF10647_consen 75 -PDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRR 153 (253)
T ss_pred -CCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcce
Confidence 7899998888888888884 4455532 2222 1 2 799999997 6666666544444555554333 44 11
Q ss_pred E----EEEeecCcceeEEEEEecCCCeEEEE--eCCCcEEE-EECCCCc
Q 011970 263 L----KVFYHLLHRNKKVDFIEQFNEKLLVK--QENENLQI-LDVRNAE 304 (474)
Q Consensus 263 L----~tl~~h~~~v~~V~F~~~~~~~ll~~--~~D~tIkI-WDv~tg~ 304 (474)
| .........+..++|.. +..|++. ..++.+.. ..+..+.
T Consensus 154 l~~~~~~~~~~~~~v~~v~W~~--~~~L~V~~~~~~~~~~~~v~~dG~~ 200 (253)
T PF10647_consen 154 LTGPRRVAPPLLSDVTDVAWSD--DSTLVVLGRSAGGPVVRLVSVDGGP 200 (253)
T ss_pred eccceEecccccCcceeeeecC--CCEEEEEeCCCCCceeEEEEccCCc
Confidence 1 11112345778999974 4556653 35555555 5544433
No 394
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=90.71 E-value=26 Score=37.42 Aligned_cols=168 Identities=13% Similarity=0.013 Sum_probs=85.3
Q ss_pred CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe--ccc------cCCceEEEEEc---C--CC---cEEEEEc-
Q 011970 270 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV--SRT------EFMTPSAFIFL---Y--EN---QLFLTFR- 332 (474)
Q Consensus 270 ~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~--l~~------h~~~v~sv~Fs---p--dg---~llaS~s- 332 (474)
.+.|..++.+ +=+.++++.+||++-|.|+|....+.. ... ....|.++-|+ + |+ -+|+.|.
T Consensus 86 ~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn 163 (395)
T PF08596_consen 86 QGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTN 163 (395)
T ss_dssp S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEET
T ss_pred CCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeC
Confidence 5677888865 358899999999999999998877643 222 33467777775 2 33 5677776
Q ss_pred CCcEEEEeC--C--CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecC-------CCccc--cccCCCCeEEEEeCC
Q 011970 333 NRTVAVWNF--R--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA-------EPEDQ--WMEGSAGSINVSSIL 399 (474)
Q Consensus 333 D~tIklWd~--~--G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~-------~~~~~--~~~s~DgtIklWdi~ 399 (474)
.|++.++.+ + |.....+.+...-..+..+.-..|..+...-+.+... +...+ .....+..||+....
T Consensus 164 ~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~ 243 (395)
T PF08596_consen 164 SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPP 243 (395)
T ss_dssp TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT
T ss_pred CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCC
Confidence 888888875 2 4444444433211111122333353331111111000 00000 111126789999999
Q ss_pred CCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEE-----cCCCCEEEEEcCCCcEEEcc
Q 011970 400 TGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFY-----DEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 400 tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slaf-----SpDg~~LaSgs~DgtVklWd 473 (474)
++++.++...... ...++.| ...+..|+.=..||.|++..
T Consensus 244 ~~k~~~K~~~~~~----------------------------------~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~S 288 (395)
T PF08596_consen 244 KSKGAHKSFDDPF----------------------------------LCSSASVVPTISRNGGYCLVCLFNNGSIRIYS 288 (395)
T ss_dssp ---EEEEE-SS-E----------------------------------EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEE
T ss_pred CCcccceeecccc----------------------------------ccceEEEEeecccCCceEEEEEECCCcEEEEE
Confidence 9998877652211 2233344 34667788888888888764
No 395
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.27 E-value=24 Score=36.36 Aligned_cols=111 Identities=11% Similarity=0.045 Sum_probs=57.8
Q ss_pred CCceEEEEEcCCCcEEEEEcCC-cEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCC
Q 011970 313 FMTPSAFIFLYENQLFLTFRNR-TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAG 391 (474)
Q Consensus 313 ~~~v~sv~Fspdg~llaS~sD~-tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dg 391 (474)
...+..+..++||+++|.++.| ...-||--...-+...--... .+.++.|+|||.+.+.+ . .|
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~----riq~~gf~~~~~lw~~~-~-----------Gg 207 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSR----RIQSMGFSPDGNLWMLA-R-----------GG 207 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-----EEEEEE-TTS-EEEEE-T-----------TT
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccc----eehhceecCCCCEEEEe-C-----------Cc
Confidence 3567788889999999998844 556787522211111111111 37999999999997754 3 78
Q ss_pred eEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCc
Q 011970 392 SINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGL 468 (474)
Q Consensus 392 tIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dgt 468 (474)
-|+.-+. ..-..++..+.. |- .... -.+..|+|.|+++..|+|+....
T Consensus 208 ~~~~s~~--~~~~~~w~~~~~-~~-----~~~~---------------------~~~ld~a~~~~~~~wa~gg~G~l 255 (302)
T PF14870_consen 208 QIQFSDD--PDDGETWSEPII-PI-----KTNG---------------------YGILDLAYRPPNEIWAVGGSGTL 255 (302)
T ss_dssp EEEEEE---TTEEEEE---B--TT-----SS-----------------------S-EEEEEESSSS-EEEEESTT-E
T ss_pred EEEEccC--CCCccccccccC-Cc-----ccCc---------------------eeeEEEEecCCCCEEEEeCCccE
Confidence 8888871 223334433321 00 0000 15889999999988887775433
No 396
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.02 E-value=3.4 Score=45.51 Aligned_cols=127 Identities=13% Similarity=0.106 Sum_probs=86.8
Q ss_pred EeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCC--------cEEEEEcCCcEEEEeCC--Cc-EEEEeccCCCCcC
Q 011970 289 KQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYEN--------QLFLTFRNRTVAVWNFR--GE-LVTSFEDHLLWHP 357 (474)
Q Consensus 289 ~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg--------~llaS~sD~tIklWd~~--G~-ll~tl~gH~~~~~ 357 (474)
+..-..|+=.|++.|+.++...-|.+ |.-+.|.||+ +.|+--+|..|--||.+ |. .+.--++|+-. .
T Consensus 352 ~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~-~ 429 (644)
T KOG2395|consen 352 GGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS-T 429 (644)
T ss_pred CCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc-c
Confidence 34556677789999999988777766 6666677664 34665678889999984 66 45555566542 2
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEe-cCCCCCCCCccccCCCCCCcccccccccc
Q 011970 358 DCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKI-NATNCSPKVDDELGSSSTGKSKKLNKSSY 436 (474)
Q Consensus 358 ~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (474)
..+-++.+-+.+|.+.+ ||. +|.|||+|- .|+--+|. .|-.
T Consensus 430 k~nFsc~aTT~sG~Ivv-gS~-----------~GdIRLYdr-i~~~AKTAlPgLG------------------------- 471 (644)
T KOG2395|consen 430 KNNFSCFATTESGYIVV-GSL-----------KGDIRLYDR-IGRRAKTALPGLG------------------------- 471 (644)
T ss_pred ccccceeeecCCceEEE-eec-----------CCcEEeehh-hhhhhhhcccccC-------------------------
Confidence 33456777788886555 554 999999995 66544332 2222
Q ss_pred ccccccccccCEEEEEEcCCCCEEEEEc
Q 011970 437 IRSTVGEALEDITSLFYDEERNEIYTGN 464 (474)
Q Consensus 437 ~~~~~~~~l~~V~slafSpDg~~LaSgs 464 (474)
+.|.-|.-+.||+.|+...
T Consensus 472 ---------~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 472 ---------DAIKHVDVTADGKWILATC 490 (644)
T ss_pred ---------CceeeEEeeccCcEEEEec
Confidence 1788899999999876543
No 397
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=89.81 E-value=22 Score=38.75 Aligned_cols=151 Identities=15% Similarity=0.163 Sum_probs=74.5
Q ss_pred CCeEEEEe---cCCCcEEEeecCCCeEEEEEcCCcEEE--EEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecC-
Q 011970 197 NGKVLTYS---AQDSIYKVFDLKNYTMLYSISDKHVQE--IKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL- 270 (474)
Q Consensus 197 nGk~LaS~---s~D~tiKlWdl~tg~~l~tl~~~~V~~--vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~- 270 (474)
+|=++++. ......-+-| .+|.....+....... +.+-|++.|++.+. ..++..|+ .|+++....--.
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~----~~~~e~D~-~G~v~~~~~l~~~ 187 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG----NRLYEIDL-LGKVIWEYDLPGG 187 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB----TEEEEE-T-T--EEEEEE--TT
T ss_pred CcEEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecC----CceEEEcC-CCCEEEeeecCCc
Confidence 45455555 2334444555 3556555554322222 55567676766643 57888887 688876654111
Q ss_pred ----cceeEEEEEecCCCeEEEEeC-------------CCcEEEEECCCCceEEe--ccccC------------------
Q 011970 271 ----HRNKKVDFIEQFNEKLLVKQE-------------NENLQILDVRNAELMEV--SRTEF------------------ 313 (474)
Q Consensus 271 ----~~v~~V~F~~~~~~~ll~~~~-------------D~tIkIWDv~tg~~~~~--l~~h~------------------ 313 (474)
|| .+.+. |.|..|+.+.+ ...|-..| .+|+.+.. +..|.
T Consensus 188 ~~~~HH--D~~~l-~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~ 263 (477)
T PF05935_consen 188 YYDFHH--DIDEL-PNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISG 263 (477)
T ss_dssp EE-B-S---EEE--TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-
T ss_pred cccccc--ccEEC-CCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCccccccccccccccccc
Confidence 22 22332 33444443441 23355666 77776543 22222
Q ss_pred -------CceEEEEEcC-CCcEEEEEc-CCcEEEEeC-CCcEEEEeccCCCCcC
Q 011970 314 -------MTPSAFIFLY-ENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHP 357 (474)
Q Consensus 314 -------~~v~sv~Fsp-dg~llaS~s-D~tIklWd~-~G~ll~tl~gH~~~~~ 357 (474)
..+.++.+.+ ++.+++|++ -.+|-..|. +|+++-.+-.|..|-.
T Consensus 264 ~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~ 317 (477)
T PF05935_consen 264 SGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNG 317 (477)
T ss_dssp SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--T
T ss_pred CCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCc
Confidence 3567888887 899999998 557777886 5999999999988753
No 398
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.78 E-value=1.1 Score=49.79 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=52.4
Q ss_pred CCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccccccc
Q 011970 359 CNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIR 438 (474)
Q Consensus 359 ~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (474)
|++.-+.++|-=++||.+.. +|-|-|--+. -+-+.++.-|..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~-----------~gelli~R~n-~qRlwtip~p~~-------------------------- 62 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTE-----------KGELLIHRLN-WQRLWTIPIPGE-------------------------- 62 (665)
T ss_pred cceEEEEEcCccchhheecc-----------CCcEEEEEec-cceeEeccCCCC--------------------------
Confidence 34667888898899998765 7766665543 555666654542
Q ss_pred ccccccccCEE-EEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 439 STVGEALEDIT-SLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 439 ~~~~~~l~~V~-slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|+ +++|.|||+.||-|=.||+|+|=|
T Consensus 63 --------~v~~sL~W~~DGkllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 63 --------NVTASLCWRPDGKLLAVGFKDGTIRLHD 90 (665)
T ss_pred --------ccceeeeecCCCCEEEEEecCCeEEEEE
Confidence 455 999999999999999999999866
No 399
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.64 E-value=1.6 Score=49.13 Aligned_cols=119 Identities=11% Similarity=0.062 Sum_probs=86.3
Q ss_pred ccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEe
Q 011970 87 KRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIE 166 (474)
Q Consensus 87 ~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw 166 (474)
.+.+-..+...+++|+-|+..|.+.|+++.+|+.+..=|++....+-....|++..+.|.+ ++. ..|-+.
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAag----t~~------g~V~v~ 103 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAG----TAS------GRVSVF 103 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhh----cCC------ceEEee
Confidence 4556666777799999999999999999999887765554455777788889988876653 344 456566
Q ss_pred EeccCCCCCccceeeec---cccCceEEEEeCCCCeEEEEecCCCcEEEeecCC
Q 011970 167 YIRRGKPDSGFALFESE---SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN 217 (474)
Q Consensus 167 ~i~~G~~~~~~~lf~~~---~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~t 217 (474)
-+..+++ ..+..++.. |-..|.++++| +||+.|-||..-|+|-+=.|.+
T Consensus 104 ql~~~~p-~~~~~~t~~d~~~~~rVTal~Ws-~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 104 QLNKELP-RDLDYVTPCDKSHKCRVTALEWS-KNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhhccCC-CcceeeccccccCCceEEEEEec-ccccEEeecCCCceEEEEEech
Confidence 6655443 222345543 23456678998 8999999999989887766654
No 400
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=88.31 E-value=1.1 Score=33.52 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=29.1
Q ss_pred CceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEE
Q 011970 314 MTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELV 346 (474)
Q Consensus 314 ~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll 346 (474)
..|..+.|+|...++|.++ ||.|-|+.++|+.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI 45 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence 3588899999999999999 99999999887754
No 401
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.29 E-value=0.91 Score=49.71 Aligned_cols=39 Identities=23% Similarity=0.526 Sum_probs=31.5
Q ss_pred eeEEEECC----CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 361 TNNIYITS----DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 361 v~svafSp----Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
+.++++++ +..+|++-|. |+++||||+.|++|++++.-.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~-----------D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSR-----------DHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEEEEE-----ETTTEEEEEET-----------TSEEEEEETTTTCEEEEEETT
T ss_pred cceEEEecceeCCCCEEEEEeC-----------CCeEEEEECCCCeEEEEeccc
Confidence 46677777 8899999887 999999999999998887444
No 402
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=88.27 E-value=3.9 Score=39.97 Aligned_cols=71 Identities=11% Similarity=0.047 Sum_probs=54.9
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEECCCCceEEe-------cc-------ccCCceEEEEEcCCCcEEEEEcCCcEEEEeC
Q 011970 276 VDFIEQFNEKLLVKQENENLQILDVRNAELMEV-------SR-------TEFMTPSAFIFLYENQLFLTFRNRTVAVWNF 341 (474)
Q Consensus 276 V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~-------l~-------~h~~~v~sv~Fspdg~llaS~sD~tIklWd~ 341 (474)
+.|.+..+..|++=..+|.+.+||+.+++++-. +. .....|..+.++.+|.-+++.+||..-.||.
T Consensus 15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 344445678888889999999999999987532 22 3556788888899999999999888899998
Q ss_pred CCcEE
Q 011970 342 RGELV 346 (474)
Q Consensus 342 ~G~ll 346 (474)
+=.|-
T Consensus 95 ~L~~W 99 (219)
T PF07569_consen 95 DLGCW 99 (219)
T ss_pred cccee
Confidence 74443
No 403
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.20 E-value=14 Score=38.26 Aligned_cols=141 Identities=11% Similarity=0.045 Sum_probs=78.3
Q ss_pred cceeEEEEEecCCCeEEEE-eCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc--CCc-EEEEeCC-CcE
Q 011970 271 HRNKKVDFIEQFNEKLLVK-QENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NRT-VAVWNFR-GEL 345 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~~-~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~t-IklWd~~-G~l 345 (474)
..++.-+|...++..-++. +++|.|.-= ..---++|. ++|+|--.+.+.+. -|| .-+.|.+ ++.
T Consensus 35 qavfasaf~~~dgs~g~a~~~eaGk~v~~------~~lpaR~Hg-----i~~~p~~~ravafARrPGtf~~vfD~~~~~~ 103 (366)
T COG3490 35 QAVFASAFDARDGSFGAATLSEAGKIVFA------TALPARGHG-----IAFHPALPRAVAFARRPGTFAMVFDPNGAQE 103 (366)
T ss_pred cchheeeeeccCCceeEEEEccCCceeee------eecccccCC-----eecCCCCcceEEEEecCCceEEEECCCCCcC
Confidence 3455556666666665554 455443210 000013454 45565555544442 333 3478875 555
Q ss_pred EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC-eEEEEecCCCCCCCCccccCCCC
Q 011970 346 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG-KCLAKINATNCSPKVDDELGSSS 424 (474)
Q Consensus 346 l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG-~cl~tl~gH~~~~~~~~~~~~~~ 424 (474)
.+++....+.|.- --=.|||||.+|-. ... |. ..+-|.|-|+|...+ +-+..+.+|.-
T Consensus 104 pv~~~s~~~RHfy---GHGvfs~dG~~LYA-TEn---df--d~~rGViGvYd~r~~fqrvgE~~t~Gi------------ 162 (366)
T COG3490 104 PVTLVSQEGRHFY---GHGVFSPDGRLLYA-TEN---DF--DPNRGVIGVYDAREGFQRVGEFSTHGI------------ 162 (366)
T ss_pred cEEEecccCceee---cccccCCCCcEEEe-ecC---CC--CCCCceEEEEecccccceecccccCCc------------
Confidence 5544433332210 01238999999974 332 22 223689999998654 45666777763
Q ss_pred CCccccccccccccccccccccCEEEEEEcCCCCEEEEEcC
Q 011970 425 TGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNR 465 (474)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~ 465 (474)
.-..|.+.+||++|+-++.
T Consensus 163 ----------------------GpHev~lm~DGrtlvvanG 181 (366)
T COG3490 163 ----------------------GPHEVTLMADGRTLVVANG 181 (366)
T ss_pred ----------------------CcceeEEecCCcEEEEeCC
Confidence 2345788999999987653
No 404
>PRK13684 Ycf48-like protein; Provisional
Probab=88.19 E-value=35 Score=35.33 Aligned_cols=147 Identities=12% Similarity=0.057 Sum_probs=84.5
Q ss_pred CceEEEEeCCCCeEEEEecCCCcEEEeecCCCe---EEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEE
Q 011970 187 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVL 263 (474)
Q Consensus 187 ~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~---~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L 263 (474)
.+..++++ |+|.+++.+..-..++.+| ..++ .+.+.....+.++++.|++.++..+. .+.+.+=+...|+--
T Consensus 174 ~~~~i~~~-~~g~~v~~g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~---~G~~~~~s~d~G~sW 248 (334)
T PRK13684 174 VVRNLRRS-PDGKYVAVSSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR---GGQIRFNDPDDLESW 248 (334)
T ss_pred eEEEEEEC-CCCeEEEEeCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEec---CCEEEEccCCCCCcc
Confidence 44578897 7888887766544444443 2222 12222246789999998665544432 344433233455433
Q ss_pred EEEeec----CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEecc---ccCCceEEEEEcCCCcEEEEEcCCcE
Q 011970 264 KVFYHL----LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSR---TEFMTPSAFIFLYENQLFLTFRNRTV 336 (474)
Q Consensus 264 ~tl~~h----~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~---~h~~~v~sv~Fspdg~llaS~sD~tI 336 (474)
+....+ ...+..+.|.+ ++.+.+.+.++.|.. -...|+--+... +-....+.+.|.++++.++.+..|+|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~--~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRT--PGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred ccccCCccccccceeeEEEcC--CCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 322211 13457788864 445677777776653 334555443332 11235677889999999998888888
Q ss_pred EEEeC
Q 011970 337 AVWNF 341 (474)
Q Consensus 337 klWd~ 341 (474)
--|+-
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 76663
No 405
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.17 E-value=7.9 Score=42.76 Aligned_cols=131 Identities=17% Similarity=0.197 Sum_probs=87.5
Q ss_pred CccEEEEecCCCeEEEEEeecCcceeEEEEEecC------CCeEEEEeCCCcEEEEECCC-Cc-eEEeccccCC----ce
Q 011970 249 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF------NEKLLVKQENENLQILDVRN-AE-LMEVSRTEFM----TP 316 (474)
Q Consensus 249 D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~------~~~ll~~~~D~tIkIWDv~t-g~-~~~~l~~h~~----~v 316 (474)
...++=.||+.|+++-+..-|-. |.=|++.+.+ .++.++|=.|..|--||.+- |+ .+.+-.+|+- --
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nF 433 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNF 433 (644)
T ss_pred cCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccccccc
Confidence 35688899999999988876544 5556654322 24556666888899999872 33 3444444431 22
Q ss_pred EEEEEcCCCcEEEEEc-CCcEEEEeCCCcEE-EEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEE
Q 011970 317 SAFIFLYENQLFLTFR-NRTVAVWNFRGELV-TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSIN 394 (474)
Q Consensus 317 ~sv~Fspdg~llaS~s-D~tIklWd~~G~ll-~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIk 394 (474)
.+++-.-+| .+|.|| +|-|||+|--|..- +-|.|-... |..|..|.||++|+..| +.++-
T Consensus 434 sc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~-----I~hVdvtadGKwil~Tc------------~tyLl 495 (644)
T KOG2395|consen 434 SCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDA-----IKHVDVTADGKWILATC------------KTYLL 495 (644)
T ss_pred ceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCc-----eeeEEeeccCcEEEEec------------ccEEE
Confidence 344445566 455666 99999999755543 345554444 67899999999999887 57777
Q ss_pred EEeC
Q 011970 395 VSSI 398 (474)
Q Consensus 395 lWdi 398 (474)
|-++
T Consensus 496 Li~t 499 (644)
T KOG2395|consen 496 LIDT 499 (644)
T ss_pred EEEE
Confidence 7664
No 406
>PRK13684 Ycf48-like protein; Provisional
Probab=87.63 E-value=37 Score=35.08 Aligned_cols=153 Identities=10% Similarity=0.067 Sum_probs=86.9
Q ss_pred cceeEEEEEecCCCeEEEEeCCCcEEE-EECCCCc-eEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC-CcEEE
Q 011970 271 HRNKKVDFIEQFNEKLLVKQENENLQI-LDVRNAE-LMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVT 347 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~~~~D~tIkI-WDv~tg~-~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~-G~ll~ 347 (474)
..+..+.+.+ ++.+++.+..|.+.. +| ..++ -.....+-...+.++++.|++++++.+..|.+.+=..+ |+--+
T Consensus 173 g~~~~i~~~~--~g~~v~~g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 173 GVVRNLRRSP--DGKYVAVSSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWS 249 (334)
T ss_pred ceEEEEEECC--CCeEEEEeCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccc
Confidence 3557777753 455666666666543 33 2223 22333344467889999999999988878877543333 55332
Q ss_pred EeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCc
Q 011970 348 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGK 427 (474)
Q Consensus 348 tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~ 427 (474)
...-+.. .....+.+++|.|++++++.+. +|.|.. ....|+--+.++.+...|
T Consensus 250 ~~~~~~~-~~~~~l~~v~~~~~~~~~~~G~------------~G~v~~-S~d~G~tW~~~~~~~~~~------------- 302 (334)
T PRK13684 250 KPIIPEI-TNGYGYLDLAYRTPGEIWAGGG------------NGTLLV-SKDGGKTWEKDPVGEEVP------------- 302 (334)
T ss_pred cccCCcc-ccccceeeEEEcCCCCEEEEcC------------CCeEEE-eCCCCCCCeECCcCCCCC-------------
Confidence 2221100 0001257899999999888652 676644 334555544443222111
Q ss_pred cccccccccccccccccccCEEEEEEcCCCCEEEEEcCCCcEEEc
Q 011970 428 SKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHGLVHVW 472 (474)
Q Consensus 428 ~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~DgtVklW 472 (474)
...+.+.|-.+++.++.| ..|+|--|
T Consensus 303 ------------------~~~~~~~~~~~~~~~~~G-~~G~il~~ 328 (334)
T PRK13684 303 ------------------SNFYKIVFLDPEKGFVLG-QRGVLLRY 328 (334)
T ss_pred ------------------cceEEEEEeCCCceEEEC-CCceEEEe
Confidence 157778888777766654 46666443
No 407
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=87.46 E-value=30 Score=33.79 Aligned_cols=143 Identities=15% Similarity=0.196 Sum_probs=86.2
Q ss_pred CCeEEEEecCCCcEEEeecC-CCeEEEEEcCCcEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEEE--------
Q 011970 197 NGKVLTYSAQDSIYKVFDLK-NYTMLYSISDKHVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKVF-------- 266 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~-tg~~l~tl~~~~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~tl-------- 266 (474)
.|+.|+-|.+|| +-++++. ........+...|..+..-| -++|++-+ |+.+.+.++.+-.....-
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs----d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS----DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc----CCccEEEEchhhcccccccccccccc
Confidence 577888899999 7788883 33344444445699999887 33444432 588999988764443311
Q ss_pred ---eecCcceeEEEEEe----cCCCeEEEEeCCCcEEEEECCCC-----ceEEeccccCCceEEEEEcCCCcEEEEEcCC
Q 011970 267 ---YHLLHRNKKVDFIE----QFNEKLLVKQENENLQILDVRNA-----ELMEVSRTEFMTPSAFIFLYENQLFLTFRNR 334 (474)
Q Consensus 267 ---~~h~~~v~~V~F~~----~~~~~ll~~~~D~tIkIWDv~tg-----~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~ 334 (474)
.........+.|.. +.+...++....++|.||..... +..+.+. -...+.+++|. ++.++-+..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence 11122233344433 34556666666669999987763 2222222 22578889888 4445555445
Q ss_pred cEEEEeCC-CcEEE
Q 011970 335 TVAVWNFR-GELVT 347 (474)
Q Consensus 335 tIklWd~~-G~ll~ 347 (474)
...+-|++ |+...
T Consensus 158 ~f~~idl~~~~~~~ 171 (275)
T PF00780_consen 158 GFYLIDLNTGSPSE 171 (275)
T ss_pred ceEEEecCCCCceE
Confidence 57788986 66543
No 408
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=87.42 E-value=0.1 Score=59.82 Aligned_cols=146 Identities=19% Similarity=0.210 Sum_probs=84.4
Q ss_pred EEeCCCCeEEEEecCCCcEEEeecC-CCe----EEEEEc--C-C-cEEEEEEcCCc---------eEEEEecCCCCccEE
Q 011970 192 EFDDVNGKVLTYSAQDSIYKVFDLK-NYT----MLYSIS--D-K-HVQEIKISPGI---------MLLIFNRSSSHVPLK 253 (474)
Q Consensus 192 ~Fs~~nGk~LaS~s~D~tiKlWdl~-tg~----~l~tl~--~-~-~V~~vafSpg~---------~la~~s~~s~D~tIk 253 (474)
+.| |||+++|.+..||.++.|.+. +|+ |++... + + .|-.+ |.... .+.+... .-...+|
T Consensus 242 ~lS-pDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Ittt-d~nre~k 318 (1283)
T KOG1916|consen 242 SLS-PDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTT-DVNREEK 318 (1283)
T ss_pred eeC-CCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecc-cCCccee
Confidence 355 899999999999999999864 444 554443 1 1 23222 33211 2223211 1224599
Q ss_pred EEecCCCeEEEEEeecCcceeEEEEEecCCCe------------EEEEeCCCcEEEEECCCCceEEeccccC-CceEEEE
Q 011970 254 ILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEK------------LLVKQENENLQILDVRNAELMEVSRTEF-MTPSAFI 320 (474)
Q Consensus 254 LWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~------------ll~~~~D~tIkIWDv~tg~~~~~l~~h~-~~v~sv~ 320 (474)
+|.-.--+|+ +...-+.+..|. +++++- ++..+.|++|+||.=+--...-++..|. +.|.+-+
T Consensus 319 ~w~~a~w~Cl--l~~~~d~v~iV~--p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~a~~~~vs~~~~~hpV~S~i 394 (1283)
T KOG1916|consen 319 FWAEAPWQCL--LDKLIDGVQIVG--PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRKAQPLVVSRPHDGHPVLSAI 394 (1283)
T ss_pred Eeeccchhhh--hhhcccceEeec--CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcchhhhhhhhhhhhcceecccc
Confidence 9998888888 222223444555 444432 2234689999999644333223333332 3555555
Q ss_pred E--c---CCCcEEEEEc--CCcEEEEeCCCc
Q 011970 321 F--L---YENQLFLTFR--NRTVAVWNFRGE 344 (474)
Q Consensus 321 F--s---pdg~llaS~s--D~tIklWd~~G~ 344 (474)
| | |+---+.++. ++.+++|-+.|+
T Consensus 395 ~v~S~~R~~h~e~~~~~~~nr~~~i~~s~g~ 425 (1283)
T KOG1916|consen 395 FVTSPERPDHIELITGGPLNRELKIWVSAGE 425 (1283)
T ss_pred ccccCCCccccccccCCcchhhhhhhhhccc
Confidence 5 3 3444566665 889999998654
No 409
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=87.38 E-value=1.2 Score=33.30 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=25.3
Q ss_pred CEEEEEEcCCCCEEEEEcCCCcEEEcc
Q 011970 447 DITSLFYDEERNEIYTGNRHGLVHVWS 473 (474)
Q Consensus 447 ~V~slafSpDg~~LaSgs~DgtVklWd 473 (474)
.|..+.|+|....||.|+.||.|.|++
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~R 39 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYR 39 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEE
Confidence 799999999999999999999998865
No 410
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=86.63 E-value=9.8 Score=42.56 Aligned_cols=149 Identities=11% Similarity=0.139 Sum_probs=90.4
Q ss_pred cCCCeEEEEE----cC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCC---Ce
Q 011970 215 LKNYTMLYSI----SD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN---EK 285 (474)
Q Consensus 215 l~tg~~l~tl----~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~---~~ 285 (474)
|-.|++++|. ++ +.|..||+.+|..++...-.-..+.+|.=| -+.+..|+ +|..|.|.|+.. -.
T Consensus 2 LGkgkLLRTGlNaL~qAiHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~pa 74 (671)
T PF15390_consen 2 LGKGKLLRTGLNALHQAIHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPA 74 (671)
T ss_pred CcccchhhcchHHHHhhhccccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCc
Confidence 3346666654 32 689999999877655442111112233222 24556665 588888876532 37
Q ss_pred EEEEeCCCcEEEEECCC-----CceEEecccc---C--CceEEEEEcCCCcEEEEEc--CCcEEEEeCC--CcE-EEEec
Q 011970 286 LLVKQENENLQILDVRN-----AELMEVSRTE---F--MTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GEL-VTSFE 350 (474)
Q Consensus 286 ll~~~~D~tIkIWDv~t-----g~~~~~l~~h---~--~~v~sv~Fspdg~llaS~s--D~tIklWd~~--G~l-l~tl~ 350 (474)
|||-+..+.|-+|.+.- ++++..-.-| . .-+-.+.|.|....|+.-. |-.| +.+++ +.. ...++
T Consensus 75 LLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV-~~sV~~d~srVkaDi~ 153 (671)
T PF15390_consen 75 LLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV-LPSVHCDSSRVKADIK 153 (671)
T ss_pred eEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE-eeeeeeCCceEEEecc
Confidence 89999999999999872 3332211111 1 1223466788888776654 5555 67774 333 44666
Q ss_pred cCCCCcCCCCeeEEEECCCCCEEEEEe
Q 011970 351 DHLLWHPDCNTNNIYITSDQDLIISYC 377 (474)
Q Consensus 351 gH~~~~~~~~v~svafSpDg~~LaS~s 377 (474)
++.. |-..+|++||+.|+-+=
T Consensus 154 ~~G~------IhCACWT~DG~RLVVAv 174 (671)
T PF15390_consen 154 TSGL------IHCACWTKDGQRLVVAV 174 (671)
T ss_pred CCce------EEEEEecCcCCEEEEEe
Confidence 6554 56788999999998764
No 411
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=86.49 E-value=72 Score=37.18 Aligned_cols=66 Identities=20% Similarity=0.327 Sum_probs=43.7
Q ss_pred CCcEEEEeC-CCcEEEEec--cCCCCcCCCCeeEEE--EC-CCCC---EEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 333 NRTVAVWNF-RGELVTSFE--DHLLWHPDCNTNNIY--IT-SDQD---LIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 333 D~tIklWd~-~G~ll~tl~--gH~~~~~~~~v~sva--fS-pDg~---~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
.++|---|. +|+.+-.++ .|..|.+|..-..+- +. .||+ .++.+++ +|.+.+.|-.|||.
T Consensus 413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K-----------~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTK-----------QGQIYVLDRRTGEP 481 (764)
T ss_pred cceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECC-----------CCEEEEEECCCCCE
Confidence 345566777 488766554 466676554322222 22 2774 7777776 99999999999999
Q ss_pred EEEecC
Q 011970 404 LAKINA 409 (474)
Q Consensus 404 l~tl~g 409 (474)
+...+.
T Consensus 482 l~~~~e 487 (764)
T TIGR03074 482 IVPVEE 487 (764)
T ss_pred Eeecee
Confidence 987654
No 412
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=86.42 E-value=6.2 Score=42.50 Aligned_cols=89 Identities=13% Similarity=0.071 Sum_probs=62.8
Q ss_pred eccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCC-CcEEEEeccCCCCcCCCCeeEEEECCC----------------
Q 011970 308 VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD---------------- 369 (474)
Q Consensus 308 ~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD---------------- 369 (474)
.+....-.+.+++.+|.++++|... =|-|-|+|+. |..++-++|=.+.. |. |--...+.
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~-wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CG-WIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EE-EEEeecccccccccccccCCCCcc
Confidence 3444555677889999999998876 6789999994 98888888754421 10 11111111
Q ss_pred CCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecC
Q 011970 370 QDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINA 409 (474)
Q Consensus 370 g~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~g 409 (474)
..+|+-+.. .-|.|.||++++|..++.++-
T Consensus 379 ~l~LvIyap----------rRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 379 ALFLVIYAP----------RRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred eEEEEEEec----------cCCeEEEEecCCCCEEEEEEe
Confidence 346777753 589999999999999999865
No 413
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.22 E-value=3.4 Score=40.43 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=53.8
Q ss_pred ccccccccccEEEEEeeccEEEEeeCCCeEEeeeccccceeeE-------eec------CCCceEEEEEEeeCCCEEEEE
Q 011970 81 VLPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRETNRRICF-------LNV------SPDEVIRSLFYNKNNDSLITV 147 (474)
Q Consensus 81 ~~~~~~~~~~V~~i~~s~~~las~s~dgtiklW~~~tg~~l~~-------l~g------~~~~~i~sv~fspdg~~Lis~ 147 (474)
..|+|.-.++|.-+...++.|.+...+|.+.+||+.+++++.. |+. .....|.++.++.+|.-||+-
T Consensus 5 l~P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 5 LLPPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred ccCcEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 3677888888888888899999999999999999999887543 331 244668888888888877764
Q ss_pred E
Q 011970 148 S 148 (474)
Q Consensus 148 S 148 (474)
|
T Consensus 85 s 85 (219)
T PF07569_consen 85 S 85 (219)
T ss_pred e
Confidence 4
No 414
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=86.21 E-value=5.9 Score=42.62 Aligned_cols=81 Identities=17% Similarity=0.315 Sum_probs=55.1
Q ss_pred EEEcC--CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCC----------------
Q 011970 222 YSISD--KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFN---------------- 283 (474)
Q Consensus 222 ~tl~~--~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~---------------- 283 (474)
+.|.+ ..+.+|..+|.+.||+.+ .+-+-|-|+|+.+|..++-++| .+--.+.|++-..
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~t--DslGRV~LiD~~~~~vvrmWKG--YRdAqc~wi~~~~~~~~~~~~~~~~~~~~ 376 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVT--DSLGRVLLIDVARGIVVRMWKG--YRDAQCGWIEVPEEGDRDRSNSNSPKSSS 376 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEE--cCCCcEEEEECCCChhhhhhcc--CccceEEEEEeecccccccccccccCCCC
Confidence 34444 358899999988887774 2346899999999999998886 3344445543211
Q ss_pred --C-eEEE-EeCCCcEEEEECCCCceE
Q 011970 284 --E-KLLV-KQENENLQILDVRNAELM 306 (474)
Q Consensus 284 --~-~ll~-~~~D~tIkIWDv~tg~~~ 306 (474)
- .|++ .-.-+.|.||++++|..+
T Consensus 377 ~~~l~LvIyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 377 RFALFLVIYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred cceEEEEEEeccCCeEEEEecCCCCEE
Confidence 1 2223 446788999999888754
No 415
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=86.20 E-value=37 Score=33.64 Aligned_cols=141 Identities=12% Similarity=0.062 Sum_probs=81.7
Q ss_pred cEEEEEEcC-CceEEEEecCCCCccEEEEecCCCeEEEE-EeecCcceeEEEEEecCCCeEEEEeCCCcEEEE-ECCCCc
Q 011970 228 HVQEIKISP-GIMLLIFNRSSSHVPLKILSIEDGTVLKV-FYHLLHRNKKVDFIEQFNEKLLVKQENENLQIL-DVRNAE 304 (474)
Q Consensus 228 ~V~~vafSp-g~~la~~s~~s~D~tIkLWdi~tG~~L~t-l~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIW-Dv~tg~ 304 (474)
.+.+.++|| |..+|..........+.++. .|..... +.+ .......|. +++..+.+...+...+++ +..+++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g--~~l~~PS~d-~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTG--GSLTRPSWD-PDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccC--Ccccccccc-CCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999997 55565554112223455555 3433333 333 355666775 444445555566666666 344554
Q ss_pred eE--EeccccCC-ceEEEEEcCCCcEEEEEc----CCcEEEEeC----CCc------EEEEeccCCCCcCCCCeeEEEEC
Q 011970 305 LM--EVSRTEFM-TPSAFIFLYENQLFLTFR----NRTVAVWNF----RGE------LVTSFEDHLLWHPDCNTNNIYIT 367 (474)
Q Consensus 305 ~~--~~l~~h~~-~v~sv~Fspdg~llaS~s----D~tIklWd~----~G~------ll~tl~gH~~~~~~~~v~svafS 367 (474)
.. .+-..... .|.+|.+||||..+|--. ++.|.|=-+ .|. .+........ .+.+++|.
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~-----~v~~v~W~ 174 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS-----DVTDVAWS 174 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccC-----cceeeeec
Confidence 33 33222222 899999999999988765 566666544 241 1111111111 26799999
Q ss_pred CCCCEEEEEec
Q 011970 368 SDQDLIISYCK 378 (474)
Q Consensus 368 pDg~~LaS~s~ 378 (474)
+++.+++-+..
T Consensus 175 ~~~~L~V~~~~ 185 (253)
T PF10647_consen 175 DDSTLVVLGRS 185 (253)
T ss_pred CCCEEEEEeCC
Confidence 99999998764
No 416
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=85.52 E-value=25 Score=39.88 Aligned_cols=108 Identities=12% Similarity=0.049 Sum_probs=69.3
Q ss_pred EEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEe-ecCcceeEEEE-EecCCCeEEEEeCCCcEEEEECC-----CC
Q 011970 231 EIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY-HLLHRNKKVDF-IEQFNEKLLVKQENENLQILDVR-----NA 303 (474)
Q Consensus 231 ~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~-~h~~~v~~V~F-~~~~~~~ll~~~~D~tIkIWDv~-----tg 303 (474)
-+.-|.=+++|+..++ -.++.|||...|.+...-. ...+.|..++| +.|+++.+++-|..+.|.|+--. +.
T Consensus 34 li~gss~~k~a~V~~~--~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSS--RSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred eEeecccCcEEEEECC--CCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3444433344554322 3579999999988654322 23478889998 45778888888999999998532 11
Q ss_pred ----ceEEe--ccccC-CceEEEEEcCCCcEEEEEcCCcEEEEeC
Q 011970 304 ----ELMEV--SRTEF-MTPSAFIFLYENQLFLTFRNRTVAVWNF 341 (474)
Q Consensus 304 ----~~~~~--l~~h~-~~v~sv~Fspdg~llaS~sD~tIklWd~ 341 (474)
..++. ...|+ ..|...+|.+||.+++.++ +.+-|.|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEeC-CEEEEECC
Confidence 12221 23444 5788999999998876543 45556664
No 417
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=85.02 E-value=58 Score=34.80 Aligned_cols=264 Identities=15% Similarity=0.094 Sum_probs=123.8
Q ss_pred cEEEEEee--ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEEe--eCCCEEEEEEeecCCCccceeeeEEEE
Q 011970 90 KVIEIVAA--RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFYN--KNNDSLITVSVYASDNFSSLKCRSTKI 165 (474)
Q Consensus 90 ~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~fs--pdg~~Lis~S~~~s~d~s~Lk~~~~~i 165 (474)
.|..|.|+ .--||.+-.+|-|-||....++.-. +.+.=..+.++ +.. ..+ -+..-+.|
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~-----~~~~~~~~~~~~~~~~----------~~~---~~~~l~di 64 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG-----NREQPPDLDYNFRRFS----------LNN---SPGKLTDI 64 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------S------------GGG---SS-SEEE-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC-----ccCCCcccCccccccc----------ccC---CCcceEEe
Confidence 47888888 3357888899999999887655322 01111111111 100 000 00112222
Q ss_pred eEeccCCCCCccc---eeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--C--------CcEEEE
Q 011970 166 EYIRRGKPDSGFA---LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D--------KHVQEI 232 (474)
Q Consensus 166 w~i~~G~~~~~~~---lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~--------~~V~~v 232 (474)
-+.....+-++|. |.+.. .+.+-.++.|+ =| .+|-|.+||++.|-|+.....+|.-+ + ..|..+
T Consensus 65 ~~r~~~~~~~gf~P~~l~~~~-~g~vtal~~S~-iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~i 141 (395)
T PF08596_consen 65 SDRAPPSLKEGFLPLTLLDAK-QGPVTALKNSD-IG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSI 141 (395)
T ss_dssp GGG--TT-SEEEEEEEEE----S-SEEEEEE-B-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEE
T ss_pred hhhCCcccccccCchhheecc-CCcEeEEecCC-Cc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEE
Confidence 2222233222221 22222 45566788873 36 89999999999999999999888743 1 358888
Q ss_pred EEcC-----C----ceEEEEecCCCCccEEEEecC---CCeEEEEEe----ecCcceeEEEEEecCCC------------
Q 011970 233 KISP-----G----IMLLIFNRSSSHVPLKILSIE---DGTVLKVFY----HLLHRNKKVDFIEQFNE------------ 284 (474)
Q Consensus 233 afSp-----g----~~la~~s~~s~D~tIkLWdi~---tG~~L~tl~----~h~~~v~~V~F~~~~~~------------ 284 (474)
.|+- + ..|+++.. .+.+.++.|- .|.-...|. .+...+.++.....+.+
T Consensus 142 eF~vm~~~~D~ySSi~L~vGTn---~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~ 218 (395)
T PF08596_consen 142 EFSVMTLGGDGYSSICLLVGTN---SGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQG 218 (395)
T ss_dssp EEEEEE-TTSSSEEEEEEEEET---TSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHG
T ss_pred EEEEEecCCCcccceEEEEEeC---CCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhc
Confidence 8881 1 23333322 2444444332 122222222 23345555553321111
Q ss_pred --------eEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEE-----cCCCcEEEEEc-CCcEEEEeC-CCcEEEEe
Q 011970 285 --------KLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIF-----LYENQLFLTFR-NRTVAVWNF-RGELVTSF 349 (474)
Q Consensus 285 --------~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~F-----spdg~llaS~s-D~tIklWd~-~G~ll~tl 349 (474)
.+++...+..|||...-++++............++.| ...+..|++-. ||.|+++.+ .=+.+..+
T Consensus 219 l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~ 298 (395)
T PF08596_consen 219 LSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSV 298 (395)
T ss_dssp GGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEE
T ss_pred cccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcc
Confidence 2444455788999999988877543333234445555 34677777776 999999999 65655555
Q ss_pred ccCCCCcCCCCeeEEEECCCCCEEEEEec
Q 011970 350 EDHLLWHPDCNTNNIYITSDQDLIISYCK 378 (474)
Q Consensus 350 ~gH~~~~~~~~v~svafSpDg~~LaS~s~ 378 (474)
.=+.... .-.+....|+++|+.+.=.+.
T Consensus 299 ~l~~~~d-~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 299 SLPPPLD-SRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp E-SS----HHHHTT-EE-TTS-EEEE-SS
T ss_pred cCCCccc-cccccccEECCCCCEEEEeCc
Confidence 4322100 001356788999998876553
No 418
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=84.29 E-value=14 Score=37.00 Aligned_cols=78 Identities=13% Similarity=0.026 Sum_probs=51.1
Q ss_pred EEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc--CC--cEEEEeCCC---cEE-EEec---cCCCCcCCCCeeEE
Q 011970 296 QILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAVWNFRG---ELV-TSFE---DHLLWHPDCNTNNI 364 (474)
Q Consensus 296 kIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s--D~--tIklWd~~G---~ll-~tl~---gH~~~~~~~~v~sv 364 (474)
-+||+.+++.............+=+|.|||++|.+|. || .|++.+... .|- .... ...-|- .++
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY-----pT~ 123 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY-----PTA 123 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcc-----ccc
Confidence 3789998877654344455666667999999999986 43 688888522 221 1111 112352 457
Q ss_pred EECCCCCEEEEEec
Q 011970 365 YITSDQDLIISYCK 378 (474)
Q Consensus 365 afSpDg~~LaS~s~ 378 (474)
..-|||+.|+.|+.
T Consensus 124 ~~L~DG~vlIvGG~ 137 (243)
T PF07250_consen 124 TTLPDGRVLIVGGS 137 (243)
T ss_pred eECCCCCEEEEeCc
Confidence 77899999998864
No 419
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=83.10 E-value=59 Score=33.35 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=40.4
Q ss_pred ccEEEEecCCCeEEEEEe--ecC-------------------------cceeEEEEEecCCCeEEEEeCCCcEEEEECCC
Q 011970 250 VPLKILSIEDGTVLKVFY--HLL-------------------------HRNKKVDFIEQFNEKLLVKQENENLQILDVRN 302 (474)
Q Consensus 250 ~tIkLWdi~tG~~L~tl~--~h~-------------------------~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~t 302 (474)
..+.--|++||++|.... .|. -++.+|+.. .+|.+|++.=.=.+|-+.|-++
T Consensus 96 ~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~-~~G~yLiS~R~~~~i~~I~~~t 174 (299)
T PF14269_consen 96 DVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKD-DDGDYLISSRNTSTIYKIDPST 174 (299)
T ss_pred ceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeec-CCccEEEEecccCEEEEEECCC
Confidence 456677899999987544 111 134555543 2344554444668899999999
Q ss_pred CceEEecccc
Q 011970 303 AELMEVSRTE 312 (474)
Q Consensus 303 g~~~~~l~~h 312 (474)
|+.+-.+.|.
T Consensus 175 G~I~W~lgG~ 184 (299)
T PF14269_consen 175 GKIIWRLGGK 184 (299)
T ss_pred CcEEEEeCCC
Confidence 9998887665
No 420
>PHA02713 hypothetical protein; Provisional
Probab=82.61 E-value=59 Score=36.19 Aligned_cols=194 Identities=8% Similarity=0.050 Sum_probs=100.3
Q ss_pred CCeEEEEecCC------CcEEEeecCCCeEE--EEEcCC-cEEEEEEcCCceEEEEecCCC--CccEEEEecCCCeEEE-
Q 011970 197 NGKVLTYSAQD------SIYKVFDLKNYTML--YSISDK-HVQEIKISPGIMLLIFNRSSS--HVPLKILSIEDGTVLK- 264 (474)
Q Consensus 197 nGk~LaS~s~D------~tiKlWdl~tg~~l--~tl~~~-~V~~vafSpg~~la~~s~~s~--D~tIkLWdi~tG~~L~- 264 (474)
+|++.+.|+.+ .++-.+|..+.+-. ..+... .-.+++.-.|...++++..+. -.++..+|.++.+-..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 68888888854 23556676665421 111111 111333335666666543221 1358889988764322
Q ss_pred -EEeecCcceeEEEEEecCCCeEEEEeCC-----------------------CcEEEEECCCCceEEeccccCCceEEEE
Q 011970 265 -VFYHLLHRNKKVDFIEQFNEKLLVKQEN-----------------------ENLQILDVRNAELMEVSRTEFMTPSAFI 320 (474)
Q Consensus 265 -tl~~h~~~v~~V~F~~~~~~~ll~~~~D-----------------------~tIkIWDv~tg~~~~~l~~h~~~v~sv~ 320 (474)
.+...... ..++- -+|...++||.+ .++..+|.++.+-.....-......+-+
T Consensus 383 ~~mp~~r~~-~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~ 459 (557)
T PHA02713 383 PDMPIALSS-YGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGV 459 (557)
T ss_pred CCCCccccc-ccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcE
Confidence 22211111 12221 224444446654 3577899988776543221111112222
Q ss_pred EcCCCcEEEEEc-C------CcEEEEeCCC-c---EEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCC
Q 011970 321 FLYENQLFLTFR-N------RTVAVWNFRG-E---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGS 389 (474)
Q Consensus 321 Fspdg~llaS~s-D------~tIklWd~~G-~---ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~ 389 (474)
-.-+|++.+.|+ + .+|..+|.+. + .+..+.-.... ...+++ +|++.+.|+.
T Consensus 460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~-----~~~~~~--~~~iyv~Gg~----------- 521 (557)
T PHA02713 460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA-----LHTILH--DNTIMMLHCY----------- 521 (557)
T ss_pred EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc-----ceeEEE--CCEEEEEeee-----------
Confidence 345678888876 4 2467788743 2 33444332221 233433 8899998876
Q ss_pred CC--eEEEEeCCCCeEEEEecCCC
Q 011970 390 AG--SINVSSILTGKCLAKINATN 411 (474)
Q Consensus 390 Dg--tIklWdi~tG~cl~tl~gH~ 411 (474)
|+ ++..+|+.|++--..-..|+
T Consensus 522 ~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 522 ESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred cceeehhhcCcccccccchhhhcC
Confidence 44 78888888877554444444
No 421
>PHA02713 hypothetical protein; Provisional
Probab=82.29 E-value=68 Score=35.67 Aligned_cols=202 Identities=7% Similarity=-0.014 Sum_probs=99.8
Q ss_pred eeccEEEEeeCC------CeEEeeeccccc--eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeE
Q 011970 96 AARDIVFALAHS------GVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY 167 (474)
Q Consensus 96 ~s~~~las~s~d------gtiklW~~~tg~--~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~ 167 (474)
..+.+.+.|+.+ .++-.+|..+++ .+..++. ..-...+-.-+|...|.++..+.. ...++..+|
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~---~R~~~~~~~~~g~IYviGG~~~~~-----~~~sve~Yd 373 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK---NRCRFSLAVIDDTIYAIGGQNGTN-----VERTIECYT 373 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc---hhhceeEEEECCEEEEECCcCCCC-----CCceEEEEE
Confidence 347777887754 245667776654 2222221 111112223466666665432211 124577778
Q ss_pred eccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCC-----------------------cEEEeecCCCe--EEE
Q 011970 168 IRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS-----------------------IYKVFDLKNYT--MLY 222 (474)
Q Consensus 168 i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~-----------------------tiKlWdl~tg~--~l~ 222 (474)
..+.+....-++-.. ......+++ +|++.+.|+.++ ++-.+|..+.+ .+.
T Consensus 374 p~~~~W~~~~~mp~~--r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~ 448 (557)
T PHA02713 374 MGDDKWKMLPDMPIA--LSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP 448 (557)
T ss_pred CCCCeEEECCCCCcc--cccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC
Confidence 766654111111111 111223444 699999998763 35566666554 122
Q ss_pred EEcCCcEE-EEEEcCCceEEEEecCCC---CccEEEEecCC-C--eEEEEEeecCcceeEEEEEecCCCeEEEEeCCC--
Q 011970 223 SISDKHVQ-EIKISPGIMLLIFNRSSS---HVPLKILSIED-G--TVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENE-- 293 (474)
Q Consensus 223 tl~~~~V~-~vafSpg~~la~~s~~s~---D~tIkLWdi~t-G--~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~-- 293 (474)
.+...... +++.-.|.+.++++.... ...+..+|.++ . +.+..+.........+. -+|...++|+.|+
T Consensus 449 ~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~---~~~~iyv~Gg~~~~~ 525 (557)
T PHA02713 449 NFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL---HDNTIMMLHCYESYM 525 (557)
T ss_pred CCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE---ECCEEEEEeeeccee
Confidence 22211111 223334555555532211 12467889886 3 34444543222222222 2345555688787
Q ss_pred cEEEEECCCCceEEeccccC
Q 011970 294 NLQILDVRNAELMEVSRTEF 313 (474)
Q Consensus 294 tIkIWDv~tg~~~~~l~~h~ 313 (474)
++..+|+.+.+-..+-..|.
T Consensus 526 ~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 526 LQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred ehhhcCcccccccchhhhcC
Confidence 88899999888765544454
No 422
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=81.95 E-value=84 Score=34.30 Aligned_cols=149 Identities=17% Similarity=0.089 Sum_probs=75.3
Q ss_pred CccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe--ccccC-CceEEEEEcCCC
Q 011970 249 HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV--SRTEF-MTPSAFIFLYEN 325 (474)
Q Consensus 249 D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~--l~~h~-~~v~sv~Fspdg 325 (474)
...+-+.|. +|.+...+.....+...+.+ -.++.|++++. ..++..|+. |+.+.. +.++. ..=-.+.+.|+|
T Consensus 127 ~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~--l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 127 SSYTYLIDN-NGDVRWYLPLDSGSDNSFKQ--LPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp EEEEEEEET-TS-EEEEE-GGGT--SSEEE---TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CceEEEECC-CccEEEEEccCccccceeeE--cCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcccccccccEECCCC
Confidence 345778884 78888777632222211333 34677777655 788888864 554332 22210 000136688999
Q ss_pred cEEEEEc--------------CCcEEEEeCCCcEEEE--eccCCCCcCC--------------------CCeeEEEECC-
Q 011970 326 QLFLTFR--------------NRTVAVWNFRGELVTS--FEDHLLWHPD--------------------CNTNNIYITS- 368 (474)
Q Consensus 326 ~llaS~s--------------D~tIklWd~~G~ll~t--l~gH~~~~~~--------------------~~v~svafSp- 368 (474)
++|+.+. ...|-..|.+|+.+.. +.+|...... .=+|+|.+.|
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~ 281 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS 281 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred CEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence 9988655 2234445545777664 3344321110 1278999988
Q ss_pred CCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCC
Q 011970 369 DQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS 413 (474)
Q Consensus 369 Dg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~ 413 (474)
|+.+|+|.=. -..|-..|..||+....|-+|...
T Consensus 282 dd~iivSsR~-----------~s~V~~Id~~t~~i~Wilg~~~~w 315 (477)
T PF05935_consen 282 DDSIIVSSRH-----------QSAVIKIDYRTGKIKWILGPPGGW 315 (477)
T ss_dssp TTEEEEEETT-----------T-EEEEEE-TTS-EEEEES-STT-
T ss_pred CCeEEEEcCc-----------ceEEEEEECCCCcEEEEeCCCCCC
Confidence 7788887532 346767788899999999888763
No 423
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=81.50 E-value=46 Score=38.06 Aligned_cols=163 Identities=20% Similarity=0.258 Sum_probs=96.3
Q ss_pred ccccEEEEEee--ccEEEEeeCCCeEEeeeccc--cceeeEeecCCC-ceEEEEEEe----eC-CCEEEEEEeecCCCcc
Q 011970 87 KRTKVIEIVAA--RDIVFALAHSGVCAAFSRET--NRRICFLNVSPD-EVIRSLFYN----KN-NDSLITVSVYASDNFS 156 (474)
Q Consensus 87 ~~~~V~~i~~s--~~~las~s~dgtiklW~~~t--g~~l~~l~g~~~-~~i~sv~fs----pd-g~~Lis~S~~~s~d~s 156 (474)
-..+|..|-|. +..|+...++|.|++|+.+. .+.+-++...+. ..+++-|.+ .+ .+.+.+++.-.+..
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k-- 205 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSK-- 205 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCc--
Confidence 47789999998 89999999999999999832 222223333332 345553322 22 24566666422233
Q ss_pred ceeeeEEEEeEe-ccCCCCCccceeeec----cccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc------
Q 011970 157 SLKCRSTKIEYI-RRGKPDSGFALFESE----SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS------ 225 (474)
Q Consensus 157 ~Lk~~~~~iw~i-~~G~~~~~~~lf~~~----~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~------ 225 (474)
...|+..+ ..+. +.++-. +.--+..-.|...+|++.-. .+++|-+|++.+-+..++++
T Consensus 206 ----~~ykL~~l~~~~~-----~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~ 274 (670)
T PF10395_consen 206 ----LSYKLISLSNESS-----SIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIID 274 (670)
T ss_pred ----EEEEEEEeccCCc-----ceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhc
Confidence 34444444 1111 122221 00011123344358987766 67899999999888888775
Q ss_pred CC--cEEE-EEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEe
Q 011970 226 DK--HVQE-IKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFY 267 (474)
Q Consensus 226 ~~--~V~~-vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~ 267 (474)
.. .+.+ .+.||+..|++. ..+|.|.|+.-..+|.+++
T Consensus 275 ~~~~~~vSl~~~s~nRvLLs~-----~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 275 KESDDLVSLKPPSPNRVLLSV-----NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred cccccceEeecCCCCeEEEEc-----CCEEEEEeehhhhhhhhhh
Confidence 11 2222 333457776654 4689999998877887776
No 424
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=81.45 E-value=23 Score=36.93 Aligned_cols=106 Identities=10% Similarity=0.112 Sum_probs=68.1
Q ss_pred EeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEE
Q 011970 165 IEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIF 243 (474)
Q Consensus 165 iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~ 243 (474)
+.||++++... + + +..|.+-.|. ||++-++-+..+++.-+|.++|+..-... .+....++|. |.++.++
T Consensus 189 vidv~s~evl~-----~-G-LsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~-G~llvVg 258 (335)
T TIGR03032 189 VIDIPSGEVVA-----S-G-LSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA-GDFAFVG 258 (335)
T ss_pred EEEeCCCCEEE-----c-C-ccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee-CCEEEEE
Confidence 56777776522 1 1 3333344553 79999999999999999998887443332 3467778887 6666555
Q ss_pred ecCCC-C----------------ccEEEEecCCCeEEEEEe--ecCcceeEEEEEe
Q 011970 244 NRSSS-H----------------VPLKILSIEDGTVLKVFY--HLLHRNKKVDFIE 280 (474)
Q Consensus 244 s~~s~-D----------------~tIkLWdi~tG~~L~tl~--~h~~~v~~V~F~~ 280 (474)
-+... + .-|.+-|+.||.++..|+ +-...++.|+..|
T Consensus 259 mSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLP 314 (335)
T TIGR03032 259 LSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLP 314 (335)
T ss_pred eccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEec
Confidence 44322 1 236777888988887765 3445556666664
No 425
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=80.92 E-value=25 Score=35.48 Aligned_cols=135 Identities=8% Similarity=0.056 Sum_probs=79.7
Q ss_pred EEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeE-EEEecCCCcEE
Q 011970 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKV-LTYSAQDSIYK 211 (474)
Q Consensus 133 ~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~-LaS~s~D~tiK 211 (474)
+.--.+|+|++.+-.=++-+++|....|-- +.|- ..+|... .|.. +.-+..++++ .|.|. -..-|.+.+|+
T Consensus 112 NDgkvdP~Gryy~GtMad~~~~le~~~g~L-y~~~-~~h~v~~---i~~~--v~IsNgl~Wd-~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 112 NDGKVDPDGRYYGGTMADFGDDLEPIGGEL-YSWL-AGHQVEL---IWNC--VGISNGLAWD-SDAKKFYYIDSLNYEVD 183 (310)
T ss_pred ccCccCCCCceeeeeeccccccccccccEE-EEec-cCCCcee---eehh--ccCCcccccc-ccCcEEEEEccCceEEe
Confidence 334457999986655556666655444322 2222 4444421 3433 3444567887 45554 45677888999
Q ss_pred Eee--cCCCeE-----EEEEcC-----CcE-EEEEEcC-Cc-eEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEE
Q 011970 212 VFD--LKNYTM-----LYSISD-----KHV-QEIKISP-GI-MLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKV 276 (474)
Q Consensus 212 lWd--l~tg~~-----l~tl~~-----~~V-~~vafSp-g~-~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V 276 (474)
-|| ..||.. ++.+.. +.. -..++-. |. .+|+++ -++|.-.|..||+.|+++.-....+.++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt~qitsc 259 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPTPQITSC 259 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence 999 667764 233321 111 0122221 22 223332 2588889999999999999878899999
Q ss_pred EEE
Q 011970 277 DFI 279 (474)
Q Consensus 277 ~F~ 279 (474)
+|-
T Consensus 260 cFg 262 (310)
T KOG4499|consen 260 CFG 262 (310)
T ss_pred Eec
Confidence 995
No 426
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=80.43 E-value=91 Score=38.36 Aligned_cols=248 Identities=11% Similarity=0.145 Sum_probs=0.0
Q ss_pred EEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCC----------------CCccceeeeccccCceEEEEeCC
Q 011970 133 RSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKP----------------DSGFALFESESLKWPGFVEFDDV 196 (474)
Q Consensus 133 ~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~----------------~~~~~lf~~~~~~~~~~V~Fs~~ 196 (474)
+.++|+++|.+-.. |. ..||.-| .+|-. .++.+|-+. ++.||..++.+|-
T Consensus 478 kGIa~dk~g~lYfa------D~------t~IR~iD-~~giIstlig~~~~~~~p~~C~~~~kl~~~-~leWPT~LaV~Pm 543 (1899)
T KOG4659|consen 478 KGIAFDKMGNLYFA------DG------TRIRVID-TTGIISTLIGTTPDQHPPRTCAQITKLVDL-QLEWPTSLAVDPM 543 (1899)
T ss_pred CceeEccCCcEEEe------cc------cEEEEec-cCceEEEeccCCCCccCccccccccchhhe-eeecccceeecCC
Q ss_pred CCeEEEEecC-------CCcEEEeecCCCeEEEEEcCC---------------cEEEEEEcCCceEEEEecCCCCccEEE
Q 011970 197 NGKVLTYSAQ-------DSIYKVFDLKNYTMLYSISDK---------------HVQEIKISPGIMLLIFNRSSSHVPLKI 254 (474)
Q Consensus 197 nGk~LaS~s~-------D~tiKlWdl~tg~~l~tl~~~---------------~V~~vafSpg~~la~~s~~s~D~tIkL 254 (474)
|+.+++--.. ++-|+ +--|.+++---.+ --++|+|++.+.|.++-+++
T Consensus 544 dnsl~Vld~nvvlrit~~~rV~---Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~------- 613 (1899)
T KOG4659|consen 544 DNSLLVLDTNVVLRITVVHRVR---IILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDG------- 613 (1899)
T ss_pred CCeEEEeecceEEEEccCccEE---EEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccc-------
Q ss_pred EecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEe----CCCcEEE-EECCCCceEEeccccCCceEEEEEcCCCcEEE
Q 011970 255 LSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQ----ENENLQI-LDVRNAELMEVSRTEFMTPSAFIFLYENQLFL 329 (474)
Q Consensus 255 Wdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~----~D~tIkI-WDv~tg~~~~~l~~h~~~v~sv~Fspdg~lla 329 (474)
.++..|.-..-+++.-+.++ -|+-+.- -|.-+++-..-...|...++++|.+|||.+.+
T Consensus 614 ----------------rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~I 677 (1899)
T KOG4659|consen 614 ----------------RRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVII 677 (1899)
T ss_pred ----------------hhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEE
Q ss_pred EEc-CCcEE----------------EEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEE---ecCCCccccccCC
Q 011970 330 TFR-NRTVA----------------VWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY---CKAEPEDQWMEGS 389 (474)
Q Consensus 330 S~s-D~tIk----------------lWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~---s~~~~~~~~~~s~ 389 (474)
.-+ +-.|| +-+..-+.+.+|.-|..-.. +.++ ++-+--+-.+| +.
T Consensus 678 AD~gN~rIr~Vs~~~~~~~~sr~YEi~~p~~QE~Y~Fnr~GqH~s---Tvsl-iTget~ynFtY~v~ss----------- 742 (1899)
T KOG4659|consen 678 ADSGNSRIRKVSARMAKYDGSRTYEITDPERQEKYTFNRHGQHSS---TVSL-ITGETFYNFTYQVDSS----------- 742 (1899)
T ss_pred ecCCchhhhhhhhcccccCCCceeeccCcccceeEEEeccceeee---eEEE-EeceeEEEEEEecCCC-----------
Q ss_pred CCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCE-EEEEcCCCc
Q 011970 390 AGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNE-IYTGNRHGL 468 (474)
Q Consensus 390 DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~-LaSgs~Dgt 468 (474)
+|.|-=---.+|..++.++..+ ...-..-.|+||. +.+-+.||+
T Consensus 743 ~~~lsei~~a~Gn~l~ilrd~~-----------------------------------s~~~~~~~~~~q~~~l~~~~~g~ 787 (1899)
T KOG4659|consen 743 IGMLSEITDASGNVLRVLRDND-----------------------------------SLFDLETTLGGQTTLLMSAYDGT 787 (1899)
T ss_pred cchhhhhhhcCCcEEEEEecCC-----------------------------------CCcceeecCCCcEEEEEEecCCc
Q ss_pred EE
Q 011970 469 VH 470 (474)
Q Consensus 469 Vk 470 (474)
++
T Consensus 788 L~ 789 (1899)
T KOG4659|consen 788 LE 789 (1899)
T ss_pred ee
No 427
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=80.42 E-value=21 Score=37.80 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=24.8
Q ss_pred CEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 447 DITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 447 ~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.|.+|..++..+.||+-..+|+|++|+.
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l 218 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDL 218 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEE
Confidence 5999999999999999999999999973
No 428
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.84 E-value=85 Score=36.33 Aligned_cols=97 Identities=13% Similarity=0.205 Sum_probs=60.3
Q ss_pred cEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec-cc---cCCceEEEEEcCCCc
Q 011970 251 PLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS-RT---EFMTPSAFIFLYENQ 326 (474)
Q Consensus 251 tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l-~~---h~~~v~sv~Fspdg~ 326 (474)
.|+|.++ +|++|.++.-.....-..-|+ +++.|+.-+.||++.++++- |+.++.. .| ....|..+-|...|-
T Consensus 65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNI-SGQLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEec-cccchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCce
Confidence 4889997 789998776322344455554 47899999999999999954 5555431 11 122455556666776
Q ss_pred EEEEEcCCcEEEEeCCCcEEEEecc
Q 011970 327 LFLTFRNRTVAVWNFRGELVTSFED 351 (474)
Q Consensus 327 llaS~sD~tIklWd~~G~ll~tl~g 351 (474)
.+++.+++-+.+=++.-..+.++.+
T Consensus 141 avlt~~g~v~~i~~~~~~~~~~~~d 165 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEEPKLRKMPD 165 (829)
T ss_pred EEEecCCcEEEEcCCCcchhhhCCC
Confidence 6666665555555544334444443
No 429
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=79.61 E-value=8.6 Score=42.12 Aligned_cols=38 Identities=11% Similarity=0.445 Sum_probs=27.6
Q ss_pred ceEEEEEcC----CCcEEEEEc-CCcEEEEeCC-CcEEEEeccC
Q 011970 315 TPSAFIFLY----ENQLFLTFR-NRTVAVWNFR-GELVTSFEDH 352 (474)
Q Consensus 315 ~v~sv~Fsp----dg~llaS~s-D~tIklWd~~-G~ll~tl~gH 352 (474)
.+.+.+.++ +..++++-+ |+++|+||+. ++|+.+..-.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 445566666 778888888 9999999995 9998876443
No 430
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=79.21 E-value=7.4 Score=26.86 Aligned_cols=41 Identities=12% Similarity=0.128 Sum_probs=29.5
Q ss_pred cCCCeEEEEe-CCCcEEEEECCCCceEEeccccCCceEEEEEc
Q 011970 281 QFNEKLLVKQ-ENENLQILDVRNAELMEVSRTEFMTPSAFIFL 322 (474)
Q Consensus 281 ~~~~~ll~~~-~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fs 322 (474)
|++++|.++. .+++|-++|..+++.+....- ...+..++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 3567777764 689999999999988766444 2456677664
No 431
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=77.46 E-value=86 Score=31.81 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=79.1
Q ss_pred cceeeEeecCCCceEE-------EEEEeeCCCEEEEEEeecCCCccceeeeEEEEeE--eccCCCCCccceeeecc----
Q 011970 118 NRRICFLNVSPDEVIR-------SLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEY--IRRGKPDSGFALFESES---- 184 (474)
Q Consensus 118 g~~l~~l~g~~~~~i~-------sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~--i~~G~~~~~~~lf~~~~---- 184 (474)
|.+-.-+-++|-+.|| .++|+.|-+..--. -+.+ .++.-|| .++|++.+...+|....
T Consensus 139 g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~i---Dsln------~~V~a~dyd~~tG~~snr~~i~dlrk~~~~ 209 (310)
T KOG4499|consen 139 GELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYI---DSLN------YEVDAYDYDCPTGDLSNRKVIFDLRKSQPF 209 (310)
T ss_pred cEEEEeccCCCceeeehhccCCccccccccCcEEEEE---ccCc------eEEeeeecCCCcccccCcceeEEeccCCCc
Confidence 3333344445555555 35555555533221 1234 5666677 68888755545555421
Q ss_pred -ccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc--CCcEEEEEEc-C--CceEEEEecCCCCccEEEE
Q 011970 185 -LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKHVQEIKIS-P--GIMLLIFNRSSSHVPLKIL 255 (474)
Q Consensus 185 -~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~--~~~V~~vafS-p--g~~la~~s~~s~D~tIkLW 255 (474)
---|...+.+ .+|.+.+..=.-++|.-.|+.||+.|.++. ...|.+++|- | +.+.++++ +..|.++++-
T Consensus 210 e~~~PDGm~ID-~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~a-a~~~dp~~~~ 284 (310)
T KOG4499|consen 210 ESLEPDGMTID-TEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTA-AKFDDPVRTN 284 (310)
T ss_pred CCCCCCcceEc-cCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEeh-hcccCchhcc
Confidence 1124456675 578877777778899999999999988775 6889999999 6 66666654 3445565543
No 432
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=77.26 E-value=1.3e+02 Score=33.75 Aligned_cols=218 Identities=11% Similarity=0.032 Sum_probs=110.5
Q ss_pred ccEEEEeeCC------CeEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccC
Q 011970 98 RDIVFALAHS------GVCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRG 171 (474)
Q Consensus 98 ~~~las~s~d------gtiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G 171 (474)
+.+++.|+.+ .+++.+|..+++-...-+-...-.-.++++ -+|...|+++.+. + .-...++...|...+
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~-~~~~lYv~GG~~~--~--~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAV-LNGKLYVVGGYDS--G--SDRLSSVERYDPRTN 359 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEE-ECCEEEEEccccC--C--CcccceEEEecCCCC
Confidence 5566666666 578899988885433222212122233333 4456666655441 1 223456777787777
Q ss_pred CCCCccceeeeccccCceEEEEeCCCCeEEEEecCCCc-----EEEeecCCCeEEE--EEcCCcEEE--EEEcCCceEEE
Q 011970 172 KPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI-----YKVFDLKNYTMLY--SISDKHVQE--IKISPGIMLLI 242 (474)
Q Consensus 172 ~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D~t-----iKlWdl~tg~~l~--tl~~~~V~~--vafSpg~~la~ 242 (474)
+....-++.+.. .-..|+- -+|++-|.|+.|+. +-.||..+-+--. .+.. .... ++--.|...++
T Consensus 360 ~W~~~a~M~~~R---~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 360 QWTPVAPMNTKR---SDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYII 433 (571)
T ss_pred ceeccCCccCcc---ccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEE
Confidence 764433333321 1113444 27999999999963 5555554433111 1111 1222 22223555555
Q ss_pred EecCCCC---ccEEEEecCCCeEEE--EEeecCcceeEEEEEecCCCeEEE-EeCCC-----cEEEEECCCCceEEec--
Q 011970 243 FNRSSSH---VPLKILSIEDGTVLK--VFYHLLHRNKKVDFIEQFNEKLLV-KQENE-----NLQILDVRNAELMEVS-- 309 (474)
Q Consensus 243 ~s~~s~D---~tIkLWdi~tG~~L~--tl~~h~~~v~~V~F~~~~~~~ll~-~~~D~-----tIkIWDv~tg~~~~~l-- 309 (474)
++.+... .++...|..+++... .+.-- -.-..++.. +++|.+ ||.|+ +|..+|.++.+-..+-
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~-R~~~g~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m 509 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTR-RSGFGVAVL---NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM 509 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCcccc-cccceEEEE---CCEEEEECCccCCCccceEEEEcCCCCceeEcccC
Confidence 5433333 467778877765432 22210 011234543 455555 67665 3778998887765541
Q ss_pred cccCCceEEEEEcCCCcEEEEEc
Q 011970 310 RTEFMTPSAFIFLYENQLFLTFR 332 (474)
Q Consensus 310 ~~h~~~v~sv~Fspdg~llaS~s 332 (474)
......+.. -.-++++.+.|.
T Consensus 510 ~~~rs~~g~--~~~~~~ly~vGG 530 (571)
T KOG4441|consen 510 TSPRSAVGV--VVLGGKLYAVGG 530 (571)
T ss_pred ccccccccE--EEECCEEEEEec
Confidence 111111111 235777777776
No 433
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=77.00 E-value=11 Score=26.04 Aligned_cols=38 Identities=11% Similarity=0.192 Sum_probs=26.6
Q ss_pred CCe-EEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEE
Q 011970 197 NGK-VLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKI 234 (474)
Q Consensus 197 nGk-~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vaf 234 (474)
||+ +.++.-.+++|-++|+++++.+.++. +..=+.++|
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 555 55666678999999999999888776 333334444
No 434
>PHA03098 kelch-like protein; Provisional
Probab=75.54 E-value=1.3e+02 Score=32.79 Aligned_cols=197 Identities=11% Similarity=-0.009 Sum_probs=89.1
Q ss_pred EeeccEEEEeeCCC------eEEeeeccccceeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEe
Q 011970 95 VAARDIVFALAHSG------VCAAFSRETNRRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYI 168 (474)
Q Consensus 95 ~~s~~~las~s~dg------tiklW~~~tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i 168 (474)
+..+.+++.|+.++ .+..||..+++-. .+..-+...-..-+..-+|...+.++.++ .-....+..+|.
T Consensus 292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~~~~~lyv~GG~~~-----~~~~~~v~~yd~ 365 (534)
T PHA03098 292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTVFNNRIYVIGGIYN-----SISLNTVESWKP 365 (534)
T ss_pred EECCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEEECCEEEEEeCCCC-----CEecceEEEEcC
Confidence 33367777776543 4667887766542 22211101111111223566555544221 112345566776
Q ss_pred ccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC------CcEEEeecCCCeEE--EEEcCC-cEEEEEEcCCce
Q 011970 169 RRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD------SIYKVFDLKNYTML--YSISDK-HVQEIKISPGIM 239 (474)
Q Consensus 169 ~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D------~tiKlWdl~tg~~l--~tl~~~-~V~~vafSpg~~ 239 (474)
.+++....-++-. ....+ .++. .+|++.+.|+.+ ..+-.+|+.+.+-. ..++.. .-.+.+...+.+
T Consensus 366 ~~~~W~~~~~lp~-~r~~~--~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~i 440 (534)
T PHA03098 366 GESKWREEPPLIF-PRYNP--CVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKI 440 (534)
T ss_pred CCCceeeCCCcCc-CCccc--eEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEE
Confidence 6666422111111 11111 2333 378999988842 35778888776521 112211 111222234444
Q ss_pred EEEEecCCCC-----ccEEEEecCCCeEEEE--EeecCcceeEEEEEecCCCeEEEEeCC-----CcEEEEECCCCce
Q 011970 240 LLIFNRSSSH-----VPLKILSIEDGTVLKV--FYHLLHRNKKVDFIEQFNEKLLVKQEN-----ENLQILDVRNAEL 305 (474)
Q Consensus 240 la~~s~~s~D-----~tIkLWdi~tG~~L~t--l~~h~~~v~~V~F~~~~~~~ll~~~~D-----~tIkIWDv~tg~~ 305 (474)
++.++....+ ..+..+|.++++-... +... .....+.. .++..++.|+.+ .+|.++|+.+.+-
T Consensus 441 yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 441 YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred EEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 4444321111 2388889888764322 2111 01111221 233444446543 4677777776654
No 435
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=74.94 E-value=45 Score=33.22 Aligned_cols=163 Identities=9% Similarity=0.089 Sum_probs=84.2
Q ss_pred CCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCCccc-----eeeeccccC---ceEEEEeCCCCeEEEEecCCCcEE
Q 011970 140 NNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDSGFA-----LFESESLKW---PGFVEFDDVNGKVLTYSAQDSIYK 211 (474)
Q Consensus 140 dg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~-----lf~~~~~~~---~~~V~Fs~~nGk~LaS~s~D~tiK 211 (474)
||..|.+.+.||. -.++.|++.+||.....+ .|..+-.++ ++.+.+ .|+.--
T Consensus 55 ~g~i~esTG~yg~--------S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw------------~egvaf 114 (262)
T COG3823 55 DGHILESTGLYGF--------SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW------------KEGVAF 114 (262)
T ss_pred CCEEEEecccccc--------ceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe------------ccceeE
Confidence 3457777776663 257889988888632221 222211110 111122 345555
Q ss_pred EeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEecCCCCccEEEEecCCC----eEEEEEeecCcce---eEEEEEecCC
Q 011970 212 VFDLKNYTMLYSIS-DKHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDG----TVLKVFYHLLHRN---KKVDFIEQFN 283 (474)
Q Consensus 212 lWdl~tg~~l~tl~-~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG----~~L~tl~~h~~~v---~~V~F~~~~~ 283 (474)
..|..+-+++..++ ...=|.+.-. |..|..+ ++..++..-|.+|- ++.-|+.+ .+| .++.+. +
T Consensus 115 ~~d~~t~~~lg~~~y~GeGWgLt~d-~~~Lims---dGsatL~frdP~tfa~~~~v~VT~~g--~pv~~LNELE~V---d 185 (262)
T COG3823 115 KYDADTLEELGRFSYEGEGWGLTSD-DKNLIMS---DGSATLQFRDPKTFAELDTVQVTDDG--VPVSKLNELEWV---D 185 (262)
T ss_pred EEChHHhhhhcccccCCcceeeecC-CcceEee---CCceEEEecCHHHhhhcceEEEEECC--eecccccceeee---c
Confidence 66767777766665 3344555533 3333333 11246666666553 33334433 222 334443 3
Q ss_pred CeEEEEe-CCCcEEEEECCCCceEEe------------ccccCCceEEEEEcCCC-cEEEEE
Q 011970 284 EKLLVKQ-ENENLQILDVRNAELMEV------------SRTEFMTPSAFIFLYEN-QLFLTF 331 (474)
Q Consensus 284 ~~ll~~~-~D~tIkIWDv~tg~~~~~------------l~~h~~~v~sv~Fspdg-~llaS~ 331 (474)
+.+.+-- .+..|-..|.++|+-+.. -..|.+....+|+-|++ ++++||
T Consensus 186 G~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 186 GELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 4455532 344455557777764432 13456678889999888 777776
No 436
>PHA03098 kelch-like protein; Provisional
Probab=74.35 E-value=1.4e+02 Score=32.57 Aligned_cols=146 Identities=8% Similarity=0.049 Sum_probs=72.4
Q ss_pred CCeEEEEecCC-----CcEEEeecCCCeEE--EEEcCC-cEEEEEEcCCceEEEEecCCCC---ccEEEEecCCCeEEE-
Q 011970 197 NGKVLTYSAQD-----SIYKVFDLKNYTML--YSISDK-HVQEIKISPGIMLLIFNRSSSH---VPLKILSIEDGTVLK- 264 (474)
Q Consensus 197 nGk~LaS~s~D-----~tiKlWdl~tg~~l--~tl~~~-~V~~vafSpg~~la~~s~~s~D---~tIkLWdi~tG~~L~- 264 (474)
+|++.+.|+.+ .++-.||..+.+-. ..++.. .-.+++...|.+++.++....+ ..+..+|+.+++-..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 68899988876 34667777765521 112211 1112333345555554321111 458888988765432
Q ss_pred -EEeecCcceeEEEEEecCCCeEEEEeCC--------CcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-C-
Q 011970 265 -VFYHLLHRNKKVDFIEQFNEKLLVKQEN--------ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-N- 333 (474)
Q Consensus 265 -tl~~h~~~v~~V~F~~~~~~~ll~~~~D--------~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D- 333 (474)
.+..... -.++.. .++...+.|+.+ ..+.++|..+++..+...-.......-+...++++++.|+ +
T Consensus 422 ~~~p~~r~-~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 498 (534)
T PHA03098 422 SPLPISHY-GGCAIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKY 498 (534)
T ss_pred CCCCcccc-CceEEE--ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcC
Confidence 1111000 011222 223344446532 2388999999876654211111111111223788888876 4
Q ss_pred ----CcEEEEeCCCcE
Q 011970 334 ----RTVAVWNFRGEL 345 (474)
Q Consensus 334 ----~tIklWd~~G~l 345 (474)
.+|.++|...+.
T Consensus 499 ~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 499 EYYINEIEVYDDKTNT 514 (534)
T ss_pred CcccceeEEEeCCCCE
Confidence 367777775443
No 437
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=73.31 E-value=1.1e+02 Score=31.06 Aligned_cols=159 Identities=14% Similarity=0.207 Sum_probs=86.6
Q ss_pred EEEeecCCCeEEEEEc--------CCcEEEEEEcC--C----ceEEEEecCCCCccEEEEecCCCeEEEEEeecCccee-
Q 011970 210 YKVFDLKNYTMLYSIS--------DKHVQEIKISP--G----IMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNK- 274 (474)
Q Consensus 210 iKlWdl~tg~~l~tl~--------~~~V~~vafSp--g----~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~- 274 (474)
+-+||++|++.++++. ...+.++++.. + +..-++ ++...-|-+.|+.+|+--+.+.++.....
T Consensus 36 Lv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYIt--D~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 36 LVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYIT--DSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp EEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEE--ETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred EEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEe--CCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 3457777777766553 24688888874 3 333343 23345788999999998887765432221
Q ss_pred EE-------EEEecCCCeEEEE----eCCCcEEEEECCCCc-e----------------------EEecccc-CCceEEE
Q 011970 275 KV-------DFIEQFNEKLLVK----QENENLQILDVRNAE-L----------------------MEVSRTE-FMTPSAF 319 (474)
Q Consensus 275 ~V-------~F~~~~~~~ll~~----~~D~tIkIWDv~tg~-~----------------------~~~l~~h-~~~v~sv 319 (474)
.. .|.-++ +..-+. +.|+..--|..-++. + ++.+ |. .......
T Consensus 114 ~~~~~i~g~~~~~~d-g~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~ 191 (287)
T PF03022_consen 114 AGPFTIGGESFQWPD-GIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGM 191 (287)
T ss_dssp SEEEEETTEEEEETT-SEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEE
T ss_pred ccceeccCceEecCC-CccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCCCCceE
Confidence 11 121111 111111 123322233322221 1 1111 11 1244567
Q ss_pred EEcCCCcEEEEEc-CCcEEEEeCCC-----cEEEEeccC--CCCcCCCCeeEEEECC--CCCEEEEEe
Q 011970 320 IFLYENQLFLTFR-NRTVAVWNFRG-----ELVTSFEDH--LLWHPDCNTNNIYITS--DQDLIISYC 377 (474)
Q Consensus 320 ~Fspdg~llaS~s-D~tIklWd~~G-----~ll~tl~gH--~~~~~~~~v~svafSp--Dg~~LaS~s 377 (474)
++.++|.++.+-- .+.|-.||.++ +...-..+. ..| ..+++|.+ +|.+-+...
T Consensus 192 ~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~-----pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 192 AIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQW-----PDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSS-----EEEEEE-T--TS-EEEEE-
T ss_pred EECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeec-----cceeeeccccCceEEEEEC
Confidence 8899999999987 89999999977 322222222 346 58999999 898888764
No 438
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=72.92 E-value=63 Score=32.39 Aligned_cols=139 Identities=15% Similarity=0.084 Sum_probs=73.4
Q ss_pred EEEecCCCeEEEEEeec-CcceeEEEEEecCCCeEEEEe-C--CCcEEEEECCC----CceEEecc--ccCCceEEEEEc
Q 011970 253 KILSIEDGTVLKVFYHL-LHRNKKVDFIEQFNEKLLVKQ-E--NENLQILDVRN----AELMEVSR--TEFMTPSAFIFL 322 (474)
Q Consensus 253 kLWdi~tG~~L~tl~~h-~~~v~~V~F~~~~~~~ll~~~-~--D~tIkIWDv~t----g~~~~~l~--~h~~~v~sv~Fs 322 (474)
-+||+.|++.. .+.-. .-..-+=.|. ++|..+.+|+ . ...+|+++..+ .+..+... ...-|=-+..-.
T Consensus 49 ~~yD~~tn~~r-pl~v~td~FCSgg~~L-~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 49 VEYDPNTNTFR-PLTVQTDTFCSGGAFL-PDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEecCCCcEE-eccCCCCCcccCcCCC-CCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 36777776553 22200 0011111233 4444444444 2 35688888655 12222111 111233355678
Q ss_pred CCCcEEEEEc--CCcEEEEeCC--Cc-EEE--Eec---cCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCe
Q 011970 323 YENQLFLTFR--NRTVAVWNFR--GE-LVT--SFE---DHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGS 392 (474)
Q Consensus 323 pdg~llaS~s--D~tIklWd~~--G~-ll~--tl~---gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~Dgt 392 (474)
|||+.|+-|+ .-+...|.-. +. ... -+. ..... +.. .-+...|||++++.+.. ++
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~--nlY-P~~~llPdG~lFi~an~------------~s 191 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPN--NLY-PFVHLLPDGNLFIFANR------------GS 191 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCcc--ccC-ceEEEcCCCCEEEEEcC------------Cc
Confidence 9999988886 5588888862 22 111 111 11110 011 35888999999998743 33
Q ss_pred EEEEeCCCCeEEEEecC
Q 011970 393 INVSSILTGKCLAKINA 409 (474)
Q Consensus 393 IklWdi~tG~cl~tl~g 409 (474)
.|+|..+++.+++|..
T Consensus 192 -~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 192 -IIYDYKTNTVVRTLPD 207 (243)
T ss_pred -EEEeCCCCeEEeeCCC
Confidence 3789988888777753
No 439
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=72.50 E-value=15 Score=25.31 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=14.0
Q ss_pred eeEEEECCCCCEEEEEec
Q 011970 361 TNNIYITSDQDLIISYCK 378 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~ 378 (474)
-...+|||||+.|+-.+.
T Consensus 11 ~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp EEEEEE-TTSSEEEEEEE
T ss_pred ccCEEEecCCCEEEEEec
Confidence 357889999999997765
No 440
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.38 E-value=24 Score=42.73 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=28.1
Q ss_pred cccCEEEEEEcCCCCEEEEEcCCCcEEEccC
Q 011970 444 ALEDITSLFYDEERNEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 444 ~l~~V~slafSpDg~~LaSgs~DgtVklWd~ 474 (474)
.-+.|..++.+-.+++||+=++.++|++|++
T Consensus 241 ~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i 271 (1311)
T KOG1900|consen 241 SKDPIRQITIDNSRNILYVLSEKGTVSAYDI 271 (1311)
T ss_pred CCCcceeeEeccccceeeeeccCceEEEEEc
Confidence 3458999999999999999999999999985
No 441
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=72.11 E-value=13 Score=36.50 Aligned_cols=47 Identities=21% Similarity=0.366 Sum_probs=38.9
Q ss_pred cEEEEeeCCCeEEeeecc--ccceeeEeecCCCceEEEEEEeeCCCEEEEE
Q 011970 99 DIVFALAHSGVCAAFSRE--TNRRICFLNVSPDEVIRSLFYNKNNDSLITV 147 (474)
Q Consensus 99 ~~las~s~dgtiklW~~~--tg~~l~~l~g~~~~~i~sv~fspdg~~Lis~ 147 (474)
|.|+.+.....|.+|++. -.+.++++. .-+.|..+.|+..|++|+|-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEEEE
Confidence 778777888899999987 346677775 45779999999999999984
No 442
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=71.44 E-value=1.2e+02 Score=33.20 Aligned_cols=190 Identities=14% Similarity=0.083 Sum_probs=86.7
Q ss_pred eEEEEecCCCcEEEeecC----CCeEEEEEcCC------c-EEE-EEEc-CCc-eEEEEecC-CCC--ccEEEEecCCCe
Q 011970 199 KVLTYSAQDSIYKVFDLK----NYTMLYSISDK------H-VQE-IKIS-PGI-MLLIFNRS-SSH--VPLKILSIEDGT 261 (474)
Q Consensus 199 k~LaS~s~D~tiKlWdl~----tg~~l~tl~~~------~-V~~-vafS-pg~-~la~~s~~-s~D--~tIkLWdi~tG~ 261 (474)
.+++.|=..+.|-|.|++ ..++.+++..+ . ..= -... |++ +++++-.+ .++ +-+-+.|-+|-+
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~ 168 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFE 168 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccc
Confidence 344555577789999987 34566666421 1 111 1111 533 44443222 112 236777777777
Q ss_pred EEEEEeecCc-ce--eEEEEEecCCCeEEEEe--------------------CCCcEEEEECCCCceEEec--cccCCce
Q 011970 262 VLKVFYHLLH-RN--KKVDFIEQFNEKLLVKQ--------------------ENENLQILDVRNAELMEVS--RTEFMTP 316 (474)
Q Consensus 262 ~L~tl~~h~~-~v--~~V~F~~~~~~~ll~~~--------------------~D~tIkIWDv~tg~~~~~l--~~h~~~v 316 (474)
++..-+...+ .- ..+-+. |-...+++++ ...++.+||+.+.+.++++ ..+...+
T Consensus 169 v~g~We~~~~~~~~gYDfw~q-pr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~p 247 (461)
T PF05694_consen 169 VKGRWEKDRGPQPFGYDFWYQ-PRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMP 247 (461)
T ss_dssp EEEE--SB-TT------EEEE-TTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEE
T ss_pred ccceeccCCCCCCCCCCeEEc-CCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCce
Confidence 7666552111 12 222223 2233444433 3578999999999999874 3333467
Q ss_pred EEEEEc--CCCcEEEEEc--CCcEEEEeC-C-Cc----EEEEecc--CCCCc-----------CCCCeeEEEECCCCCEE
Q 011970 317 SAFIFL--YENQLFLTFR--NRTVAVWNF-R-GE----LVTSFED--HLLWH-----------PDCNTNNIYITSDQDLI 373 (474)
Q Consensus 317 ~sv~Fs--pdg~llaS~s--D~tIklWd~-~-G~----ll~tl~g--H~~~~-----------~~~~v~svafSpDg~~L 373 (474)
-.|.|. |+...-.+++ ..+|-+|-- + |+ -+-++.. ...|. |. .+..|.+|.|.++|
T Consensus 248 LEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~-LitDI~iSlDDrfL 326 (461)
T PF05694_consen 248 LEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPP-LITDILISLDDRFL 326 (461)
T ss_dssp EEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-------EEE-TTS-EE
T ss_pred EEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCC-ceEeEEEccCCCEE
Confidence 788886 5555544443 555555543 2 54 2223322 11221 11 25789999999999
Q ss_pred EEEecCCCccccccCCCCeEEEEeCCC
Q 011970 374 ISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 374 aS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
--.+. -+|.||-+||..
T Consensus 327 Yvs~W----------~~GdvrqYDISD 343 (461)
T PF05694_consen 327 YVSNW----------LHGDVRQYDISD 343 (461)
T ss_dssp EEEET----------TTTEEEEEE-SS
T ss_pred EEEcc----------cCCcEEEEecCC
Confidence 98887 489999999964
No 443
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=70.92 E-value=0.35 Score=52.45 Aligned_cols=155 Identities=12% Similarity=0.143 Sum_probs=95.7
Q ss_pred EEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-CCcEEEEEEc-CCceEEEEecCCCCccEEEEecCCCeEEEEEee
Q 011970 191 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKHVQEIKIS-PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYH 268 (474)
Q Consensus 191 V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~~~V~~vafS-pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~ 268 (474)
..+- |+|.-|+-+..+-+++.+|- -|+....+. ...--++++- .+..+|+... ..+|+.|||+.+ +--++++.
T Consensus 40 ~~w~-~e~~nlavaca~tiv~~YD~-agq~~le~n~tg~aldm~wDkegdvlavlAe--k~~piylwd~n~-eytqqLE~ 114 (615)
T KOG2247|consen 40 HRWR-PEGHNLAVACANTIVIYYDK-AGQVILELNPTGKALDMAWDKEGDVLAVLAE--KTGPIYLWDVNS-EYTQQLES 114 (615)
T ss_pred eeEe-cCCCceehhhhhhHHHhhhh-hcceecccCCchhHhhhhhccccchhhhhhh--cCCCeeechhhh-hhHHHHhc
Confidence 3443 56777888888999999994 444333322 2222233333 3455555432 247999999965 33333331
Q ss_pred cCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCCCcEEEE
Q 011970 269 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTS 348 (474)
Q Consensus 269 h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~G~ll~t 348 (474)
......++.--++....++.+-..|++.|++..+.+.+-+...|+..+..++..++++.+..+.|.++.+=.-.|+-.+.
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~~qegeta~l 194 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVTTQEGETASL 194 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHhhhccceeee
Confidence 11111222111233344555667899999999988877776669999999999999988876668877666655665544
Q ss_pred ec
Q 011970 349 FE 350 (474)
Q Consensus 349 l~ 350 (474)
.+
T Consensus 195 te 196 (615)
T KOG2247|consen 195 TE 196 (615)
T ss_pred ee
Confidence 43
No 444
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=70.87 E-value=82 Score=35.93 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=57.9
Q ss_pred EeCCCcEEEEECCCCceEE--eccccCCceEEEEE--cCCCcEEEEEc-CCcEEEEeC-C------C---cEEEE--ecc
Q 011970 289 KQENENLQILDVRNAELME--VSRTEFMTPSAFIF--LYENQLFLTFR-NRTVAVWNF-R------G---ELVTS--FED 351 (474)
Q Consensus 289 ~~~D~tIkIWDv~tg~~~~--~l~~h~~~v~sv~F--spdg~llaS~s-D~tIklWd~-~------G---~ll~t--l~g 351 (474)
.+...++.|||.+.+.+-. .+ .+.+.|..+.| .||||.+++-+ .+.|.|+-- + + ..++. +.+
T Consensus 47 ~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~ 125 (631)
T PF12234_consen 47 DSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISS 125 (631)
T ss_pred ECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeec
Confidence 4567899999999988542 33 34567887776 59999999999 999999862 1 1 12332 334
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEE
Q 011970 352 HLLWHPDCNTNNIYITSDQDLIISY 376 (474)
Q Consensus 352 H~~~~~~~~v~svafSpDg~~LaS~ 376 (474)
|+. |+ |.+..+.+||.+++..
T Consensus 126 ~T~-h~---Igds~Wl~~G~LvV~s 146 (631)
T PF12234_consen 126 HTP-HP---IGDSIWLKDGTLVVGS 146 (631)
T ss_pred CCC-CC---ccceeEecCCeEEEEe
Confidence 442 22 5678899999998854
No 445
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.50 E-value=1.4e+02 Score=31.06 Aligned_cols=163 Identities=13% Similarity=0.142 Sum_probs=103.1
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcC---CcEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEE
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KHVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK 264 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~---~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~ 264 (474)
+-++.|+ |+-++|-+-.....--||=-++|+++.+++- +.-..|...-|+.++++. -.+.++.+..+..++...
T Consensus 88 vS~LTyn-p~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~d--ER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 88 VSSLTYN-PDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVD--ERDRALYLFTVDADTTVI 164 (316)
T ss_pred ccceeeC-CCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEe--hhcceEEEEEEcCCccEE
Confidence 4479998 6777887777777777887789999999872 334457777666667663 346777777666553322
Q ss_pred EE-------ee--c-CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCc-eE--EeccccC-------CceEEEEEcCC
Q 011970 265 VF-------YH--L-LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAE-LM--EVSRTEF-------MTPSAFIFLYE 324 (474)
Q Consensus 265 tl-------~~--h-~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~-~~--~~l~~h~-------~~v~sv~Fspd 324 (474)
.+ .. + ...-..+++. +.++.|.+..|-+.++|+.+..+. .+ .....+. ..++++.|.+.
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d-~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~ 243 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWD-PVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAI 243 (316)
T ss_pred eccceEEeccccCCCCcCceeeecC-CCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCC
Confidence 11 11 1 2233568886 457788888888899988877544 22 2223333 24677888854
Q ss_pred CcEEEEEc--CCcEEEEeCCCcEEEEeccCCC
Q 011970 325 NQLFLTFR--NRTVAVWNFRGELVTSFEDHLL 354 (474)
Q Consensus 325 g~llaS~s--D~tIklWd~~G~ll~tl~gH~~ 354 (474)
...|+.-| ++.+---|..|+.+..+.-+.+
T Consensus 244 ~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g 275 (316)
T COG3204 244 TNSLLVLSDESRRLLEVDLSGEVIELLSLTKG 275 (316)
T ss_pred CCcEEEEecCCceEEEEecCCCeeeeEEeccC
Confidence 44444444 7777667777887665543333
No 446
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=70.19 E-value=14 Score=25.43 Aligned_cols=26 Identities=4% Similarity=0.046 Sum_probs=18.1
Q ss_pred CceEEEEEcCCCcEEEEEc--C--CcEEEE
Q 011970 314 MTPSAFIFLYENQLFLTFR--N--RTVAVW 339 (474)
Q Consensus 314 ~~v~sv~Fspdg~llaS~s--D--~tIklW 339 (474)
..-...+|||||+.|+=.+ + |.-.||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3456778999999988765 5 666665
No 447
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=69.49 E-value=1.2e+02 Score=31.29 Aligned_cols=78 Identities=12% Similarity=0.172 Sum_probs=45.8
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCCCCC-CCCc-cccCCCCCCcccccccccccc
Q 011970 361 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINATNCS-PKVD-DELGSSSTGKSKKLNKSSYIR 438 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~ 438 (474)
..+|++.++|.+++|.=. ....+.+-.|.-.|.. |+.+..+.-...+ |... ..-+..|
T Consensus 87 ~Egi~~~~~g~~~is~E~-----~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N-------------- 146 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEG-----GRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNN-------------- 146 (326)
T ss_pred hhHeEEecCCCEEEEeCC-----ccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCC--------------
Confidence 358999999999997421 0001112778888854 8888777322210 0000 0001111
Q ss_pred ccccccccCEEEEEEcCCCCEEEEEcC
Q 011970 439 STVGEALEDITSLFYDEERNEIYTGNR 465 (474)
Q Consensus 439 ~~~~~~l~~V~slafSpDg~~LaSgs~ 465 (474)
....+|+++|||+.|+.+.+
T Consensus 147 -------~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 147 -------RGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred -------CCeEEEEECCCCCEEEEEEC
Confidence 26789999999998887754
No 448
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=68.18 E-value=12 Score=27.60 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=23.7
Q ss_pred ceeEEEEEecCC--CeEEEEeCCCcEEEEECCCC
Q 011970 272 RNKKVDFIEQFN--EKLLVKQENENLQILDVRNA 303 (474)
Q Consensus 272 ~v~~V~F~~~~~--~~ll~~~~D~tIkIWDv~tg 303 (474)
.++.+.|+|..+ +.|+.+..-+.|.|+|++++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 478899985433 45555667799999999963
No 449
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=67.29 E-value=49 Score=38.16 Aligned_cols=103 Identities=12% Similarity=0.201 Sum_probs=63.5
Q ss_pred CCeEEEEecCCCcEEEeecCC-------C-------------eEEEEEc-CCcEEEEEEc--CCceEEEEecCCCCccEE
Q 011970 197 NGKVLTYSAQDSIYKVFDLKN-------Y-------------TMLYSIS-DKHVQEIKIS--PGIMLLIFNRSSSHVPLK 253 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~t-------g-------------~~l~tl~-~~~V~~vafS--pg~~la~~s~~s~D~tIk 253 (474)
+..+|+.|..||.|-+|.+++ . ++...+. +..+|+++|. ....|++.+..+.-.||=
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 567888899999999996421 1 1223333 4579999999 766666555444333333
Q ss_pred EEecCCCeEE--EEEeecCcceeEEEEEecC--CC---eEEEEeCCCcEEEEEC
Q 011970 254 ILSIEDGTVL--KVFYHLLHRNKKVDFIEQF--NE---KLLVKQENENLQILDV 300 (474)
Q Consensus 254 LWdi~tG~~L--~tl~~h~~~v~~V~F~~~~--~~---~ll~~~~D~tIkIWDv 300 (474)
-....+.+.- ... .|.|.|-+|.|...+ +. ++++.+-.|++-+|++
T Consensus 193 af~l~~~r~~~~~s~-~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSH-QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecccccccccccc-ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 3344222211 111 256889999998543 12 5666788898888777
No 450
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=65.48 E-value=20 Score=26.52 Aligned_cols=30 Identities=13% Similarity=0.336 Sum_probs=26.0
Q ss_pred ceEEEEeCCCC--eEEEEecCCCcEEEeecCC
Q 011970 188 PGFVEFDDVNG--KVLTYSAQDSIYKVFDLKN 217 (474)
Q Consensus 188 ~~~V~Fs~~nG--k~LaS~s~D~tiKlWdl~t 217 (474)
+..+.|||.++ .+||.+-.-+-|-|+|+.+
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 56899997677 8999999999999999985
No 451
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=64.69 E-value=2.1e+02 Score=30.97 Aligned_cols=139 Identities=14% Similarity=0.315 Sum_probs=84.9
Q ss_pred CCeEEEEecCCCcEEEeecCCCe-----EEEEEc-CCcEEEEEEc---C---CceEEEEecCCCCccEEEEecC--CCe-
Q 011970 197 NGKVLTYSAQDSIYKVFDLKNYT-----MLYSIS-DKHVQEIKIS---P---GIMLLIFNRSSSHVPLKILSIE--DGT- 261 (474)
Q Consensus 197 nGk~LaS~s~D~tiKlWdl~tg~-----~l~tl~-~~~V~~vafS---p---g~~la~~s~~s~D~tIkLWdi~--tG~- 261 (474)
+...|+.||..|.+||++...+. ++.... ...|..|+.- + +..||+-.+ +.+-+..+. +|.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP----~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHP----RKLSVYSVSLVDGTV 111 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecC----CEEEEEEEEecCCCc
Confidence 44578889999999999986433 333322 3456555432 2 346666644 345555551 222
Q ss_pred ------EE-EEEeecCc-ceeEEEEEecCC-----CeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEE
Q 011970 262 ------VL-KVFYHLLH-RNKKVDFIEQFN-----EKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLF 328 (474)
Q Consensus 262 ------~L-~tl~~h~~-~v~~V~F~~~~~-----~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~ll 328 (474)
.| ..++|+.. ..+....- |+| +.+.+=+.||++.+++-++--....+.+ +--|..++|.|.-..|
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G-~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsf 189 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCG-PFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSF 189 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEE-ECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEE
Confidence 12 23344433 23455544 344 3555668999999999554444445554 7778888898888888
Q ss_pred EEEc-CCcEEEEeC
Q 011970 329 LTFR-NRTVAVWNF 341 (474)
Q Consensus 329 aS~s-D~tIklWd~ 341 (474)
++++ +.++.-+..
T Consensus 190 vt~sss~~l~~Yky 203 (418)
T PF14727_consen 190 VTASSSWTLECYKY 203 (418)
T ss_pred EEecCceeEEEecH
Confidence 8887 777776663
No 452
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=62.55 E-value=3.4e+02 Score=32.64 Aligned_cols=226 Identities=12% Similarity=0.088 Sum_probs=122.9
Q ss_pred ccEEEEeeCCCeEEeeeccccc--eeeEeecCCCceEEEEEEeeCCCEEEEEEeecCCC-----ccceeeeEEEEeEecc
Q 011970 98 RDIVFALAHSGVCAAFSRETNR--RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDN-----FSSLKCRSTKIEYIRR 170 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~--~l~~l~g~~~~~i~sv~fspdg~~Lis~S~~~s~d-----~s~Lk~~~~~iw~i~~ 170 (474)
.|-||+++. +.+++.-+..=+ .++|+.- .+..+.+.|++.-.+++.-+. ..+. =+.-..+-+++.|-.+
T Consensus 684 ~d~l~~~~~-~~l~i~tid~iqkl~irtvpl--~~~prrI~~q~~sl~~~v~s~-r~e~~~~~~~ee~~~s~l~vlD~nT 759 (1096)
T KOG1897|consen 684 PDSLASANG-GALTIGTIDEIQKLHIRTVPL--GESPRRICYQESSLTFGVLSN-RIESSAEYYGEEYEVSFLRVLDQNT 759 (1096)
T ss_pred CceEEEecC-CceEEEEecchhhcceeeecC--CCChhheEecccceEEEEEec-ccccchhhcCCcceEEEEEEecCCc
Confidence 455665544 345555444222 2445442 256788899885555554331 1111 0012233344444222
Q ss_pred CCCCCccceeee------ccccCceEEEEeCCCCeEEEEecC----------CCcEEEeecCCCeEEEEEcCCcEEEEEE
Q 011970 171 GKPDSGFALFES------ESLKWPGFVEFDDVNGKVLTYSAQ----------DSIYKVFDLKNYTMLYSISDKHVQEIKI 234 (474)
Q Consensus 171 G~~~~~~~lf~~------~~~~~~~~V~Fs~~nGk~LaS~s~----------D~tiKlWdl~tg~~l~tl~~~~V~~vaf 234 (474)
+..+.. |..-.+-++.|.+.-+.+++-|.. -|-|-|+....++.|..++...|.....
T Consensus 760 ------f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~ 833 (1096)
T KOG1897|consen 760 ------FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVY 833 (1096)
T ss_pred ------eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecccee
Confidence 221111 212234456787433777776631 1223344433323333333333333333
Q ss_pred c----CCceEEEEecCCCCccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeC--CCcEEEEECCCCceEEe
Q 011970 235 S----PGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQE--NENLQILDVRNAELMEV 308 (474)
Q Consensus 235 S----pg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~--D~tIkIWDv~tg~~~~~ 308 (474)
+ .|..+|.. -..|+|.+..+++.|+.=..|..++..++.. --++.++++-- -=++-.++-..|...++
T Consensus 834 aL~~fngkllA~I-----n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~-v~gdeI~VgDlm~Sitll~y~~~eg~f~ev 907 (1096)
T KOG1897|consen 834 ALVEFNGKLLAGI-----NQSVRLYEWTTERELRIECNISNPIIALDLQ-VKGDEIAVGDLMRSITLLQYKGDEGNFEEV 907 (1096)
T ss_pred ehhhhCCeEEEec-----CcEEEEEEccccceehhhhcccCCeEEEEEE-ecCcEEEEeeccceEEEEEEeccCCceEEe
Confidence 3 35555544 2579999999987887776777778777765 34778888853 44555566666778887
Q ss_pred ccc-cCCceEEEEEcCCCcEEEEEcCCcEEEE
Q 011970 309 SRT-EFMTPSAFIFLYENQLFLTFRNRTVAVW 339 (474)
Q Consensus 309 l~~-h~~~v~sv~Fspdg~llaS~sD~tIklW 339 (474)
-+. |..|..++.+..+-.+|.+-.++.+.+-
T Consensus 908 ArD~~p~Wmtaveil~~d~ylgae~~gNlf~v 939 (1096)
T KOG1897|consen 908 ARDYNPNWMTAVEILDDDTYLGAENSGNLFTV 939 (1096)
T ss_pred ehhhCccceeeEEEecCceEEeecccccEEEE
Confidence 554 7789999999887777665445555443
No 453
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=58.96 E-value=69 Score=36.97 Aligned_cols=101 Identities=16% Similarity=0.121 Sum_probs=64.2
Q ss_pred CCeEEEEeCCCcEEEEECCC-------C-------c------eEEeccccCCceEEEEEc--CCCcEEEEEc-CCcEEEE
Q 011970 283 NEKLLVKQENENLQILDVRN-------A-------E------LMEVSRTEFMTPSAFIFL--YENQLFLTFR-NRTVAVW 339 (474)
Q Consensus 283 ~~~ll~~~~D~tIkIWDv~t-------g-------~------~~~~l~~h~~~v~sv~Fs--pdg~llaS~s-D~tIklW 339 (474)
.+.|+++.+||.|-+|.+++ . . +.-.+. -....|.+++. ...+++|.++ -..|.|+
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 35677788999999996632 0 0 100111 22478999998 8888888888 6688888
Q ss_pred eCCC--cEEEEeccCCCCcCCCCeeEEEECCCC---C---EEEEEecCCCccccccCCCCeEEEEeC
Q 011970 340 NFRG--ELVTSFEDHLLWHPDCNTNNIYITSDQ---D---LIISYCKAEPEDQWMEGSAGSINVSSI 398 (474)
Q Consensus 340 d~~G--~ll~tl~gH~~~~~~~~v~svafSpDg---~---~LaS~s~~~~~~~~~~s~DgtIklWdi 398 (474)
-+.. +....-..|...| ||.+|.|-++. . ++++++- .|.+-+|++
T Consensus 193 af~l~~~r~~~~~s~~~~h---NIP~VSFl~~~~d~~G~v~v~a~dI-----------~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSH---NIPNVSFLDDDLDPNGHVKVVATDI-----------SGEVWTFKI 245 (717)
T ss_pred EEecccccccccccccccc---CCCeeEeecCCCCCccceEEEEEec-----------cCcEEEEEE
Confidence 8742 2111111333333 57899998764 2 6666655 787777776
No 454
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.97 E-value=74 Score=38.49 Aligned_cols=104 Identities=11% Similarity=0.062 Sum_probs=69.3
Q ss_pred EEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCC
Q 011970 276 VDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLL 354 (474)
Q Consensus 276 V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~ 354 (474)
+.+.|-.....++...|..|++.-+..-......-.-...+.+++|+|-|+.++-+. +||+.-+...++.+..+.+-..
T Consensus 161 ~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~ 240 (1405)
T KOG3630|consen 161 NVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPV 240 (1405)
T ss_pred ccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCc
Confidence 334433334455556777777654432211111112335678999999999999998 9999999999998877765443
Q ss_pred CcCCCCeeEEEECCCCCEEEEEecCC
Q 011970 355 WHPDCNTNNIYITSDQDLIISYCKAE 380 (474)
Q Consensus 355 ~~~~~~v~svafSpDg~~LaS~s~~~ 380 (474)
.- +-.|.+|.|-....+++.|+...
T Consensus 241 ~e-~yrvl~v~Wl~t~eflvvy~n~t 265 (1405)
T KOG3630|consen 241 EE-NYRVLSVTWLSTQEFLVVYGNVT 265 (1405)
T ss_pred CC-CcceeEEEEecceeEEEEecccc
Confidence 22 12478999999999999998644
No 455
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=57.80 E-value=1.6e+02 Score=34.12 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=46.3
Q ss_pred eEEEEEEeeCCCEEEEEEeec-----------CCC-c----cceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEe
Q 011970 131 VIRSLFYNKNNDSLITVSVYA-----------SDN-F----SSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFD 194 (474)
Q Consensus 131 ~i~sv~fspdg~~Lis~S~~~-----------s~d-~----s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs 194 (474)
-|..|.+||+|..||-++..+ .+. | .++.|+++.| |. .+|......-+..|.|.
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-----~~-----~~~~~~~~~~i~qv~Wh 155 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-----DE-----RFFTSNSSLEIKQVRWH 155 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-----ch-----hhccCCCCceEEEEEEc
Confidence 489999999999998865311 000 0 1233333322 00 13333222234467887
Q ss_pred CC--CCeEEEEecCCCcEEEeecCCCe
Q 011970 195 DV--NGKVLTYSAQDSIYKVFDLKNYT 219 (474)
Q Consensus 195 ~~--nGk~LaS~s~D~tiKlWdl~tg~ 219 (474)
|- ++..|+-=..|+++|++|+...+
T Consensus 156 P~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 156 PWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 32 35777777889999999997544
No 456
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=56.84 E-value=32 Score=22.46 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=21.7
Q ss_pred cCceEEEEeCCCCeEEEEecCCCcEEEe
Q 011970 186 KWPGFVEFDDVNGKVLTYSAQDSIYKVF 213 (474)
Q Consensus 186 ~~~~~V~Fs~~nGk~LaS~s~D~tiKlW 213 (474)
..|..|+.+ ++|.++++-+....|+++
T Consensus 2 ~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 357789998 799999998887777654
No 457
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=55.97 E-value=2.7e+02 Score=29.30 Aligned_cols=172 Identities=14% Similarity=0.119 Sum_probs=94.7
Q ss_pred cEEEEEEcCCceEEEEecCCCCccEEEEecC------CCeE-EEEEee-----cCcceeEEEEEec------CC-----C
Q 011970 228 HVQEIKISPGIMLLIFNRSSSHVPLKILSIE------DGTV-LKVFYH-----LLHRNKKVDFIEQ------FN-----E 284 (474)
Q Consensus 228 ~V~~vafSpg~~la~~s~~s~D~tIkLWdi~------tG~~-L~tl~~-----h~~~v~~V~F~~~------~~-----~ 284 (474)
+=|.|+|+|++.+-++. ..-++..|+|.. ..+. .-++.. .......+.|+.- .+ .
T Consensus 24 N~WGia~~p~~~~WVad--ngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVAN--TGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCCEEEec--CCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 45789999866666653 334567788875 2222 223321 0112344455311 11 2
Q ss_pred eEEEEeCCCcEEEEECCCCce------EEeccccCCceE-EEEEc--CCCcEEEEEc--CCcEEEEeCCCcEEE---Eec
Q 011970 285 KLLVKQENENLQILDVRNAEL------MEVSRTEFMTPS-AFIFL--YENQLFLTFR--NRTVAVWNFRGELVT---SFE 350 (474)
Q Consensus 285 ~ll~~~~D~tIkIWDv~tg~~------~~~l~~h~~~v~-sv~Fs--pdg~llaS~s--D~tIklWd~~G~ll~---tl~ 350 (474)
.++..+||+||-=|...-+.. +..-.+-...|+ -+++- ..+.+|-.+. +++|.+.|-+-..+. .|.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence 356788999999998543332 222222224444 24443 3344444443 999999997644332 233
Q ss_pred cCCCC---cCCCCeeEEEECCCCCEEEEEecCCCccc--cccCCCCeEEEEeCCCCeEEEEe
Q 011970 351 DHLLW---HPDCNTNNIYITSDQDLIISYCKAEPEDQ--WMEGSAGSINVSSILTGKCLAKI 407 (474)
Q Consensus 351 gH~~~---~~~~~v~svafSpDg~~LaS~s~~~~~~~--~~~s~DgtIklWdi~tG~cl~tl 407 (474)
+-..+ .| -+|..| .+++.++|-+-+++.. .++-.-|-|.++|. .|+.++.+
T Consensus 182 DP~iPagyAP-FnIqni----g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~ 237 (336)
T TIGR03118 182 DPALPAGYAP-FNVQNL----GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRV 237 (336)
T ss_pred CCCCCCCCCC-cceEEE----CCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEe
Confidence 32211 11 012222 6899999987655332 33334589999995 89999988
No 458
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=55.33 E-value=2.1e+02 Score=31.40 Aligned_cols=93 Identities=8% Similarity=0.075 Sum_probs=46.3
Q ss_pred ccEEEEecCCCeEEEEEe-ecCc-ceeEEEEEe-cCCCeEEEE-eCCCcEEEEEC-CCCc-----eEEeccc----c---
Q 011970 250 VPLKILSIEDGTVLKVFY-HLLH-RNKKVDFIE-QFNEKLLVK-QENENLQILDV-RNAE-----LMEVSRT----E--- 312 (474)
Q Consensus 250 ~tIkLWdi~tG~~L~tl~-~h~~-~v~~V~F~~-~~~~~ll~~-~~D~tIkIWDv-~tg~-----~~~~l~~----h--- 312 (474)
.++.+||+++.+.++++. +..+ -..+|.|.- |....=.++ .-..+|-+|-- ..|+ -+++... -
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp 301 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILP 301 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---
T ss_pred CeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccc
Confidence 579999999999999998 3222 347888852 222222222 23334443322 3333 1222110 0
Q ss_pred ---------CCceEEEEEcCCCcEEEEEc--CCcEEEEeCC
Q 011970 313 ---------FMTPSAFIFLYENQLFLTFR--NRTVAVWNFR 342 (474)
Q Consensus 313 ---------~~~v~sv~Fspdg~llaS~s--D~tIklWd~~ 342 (474)
..-|+.|..|.|.+.|--++ +|.|+.+|++
T Consensus 302 ~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 302 EMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred ccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence 12467788887777665554 9999999984
No 459
>PHA02790 Kelch-like protein; Provisional
Probab=54.61 E-value=3.1e+02 Score=29.73 Aligned_cols=189 Identities=11% Similarity=0.008 Sum_probs=91.5
Q ss_pred CCeEEEEecCCC-----cEEEeecCCCeEEE--EEcCCc-EEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEE--EE
Q 011970 197 NGKVLTYSAQDS-----IYKVFDLKNYTMLY--SISDKH-VQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLK--VF 266 (474)
Q Consensus 197 nGk~LaS~s~D~-----tiKlWdl~tg~~l~--tl~~~~-V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~--tl 266 (474)
++.+.+.|+.++ ++-.+|..+.+... .+.... -.+++.-.|...++++.. ...++..||..+++-.. .+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~-~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLP-NPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcC-CCCceEEEECCCCeEEECCCC
Confidence 567778887653 45567777665322 222111 112222345555555432 23568889987765432 22
Q ss_pred eecCcce-eEEEEEecCCCeEEEEeCC---CcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC
Q 011970 267 YHLLHRN-KKVDFIEQFNEKLLVKQEN---ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR 342 (474)
Q Consensus 267 ~~h~~~v-~~V~F~~~~~~~ll~~~~D---~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~ 342 (474)
.. .+. ..++- -+|...++||.+ .++..||.++.+-.....-....-...+-.-+|++.+.|+ .+..+|.+
T Consensus 350 ~~--~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG--~~e~ydp~ 423 (480)
T PHA02790 350 LK--PRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR--NAEFYCES 423 (480)
T ss_pred CC--CCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC--ceEEecCC
Confidence 21 111 22222 224444556644 4578899988776543111111111122346788888874 56788885
Q ss_pred CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCe
Q 011970 343 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGK 402 (474)
Q Consensus 343 G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~ 402 (474)
.+.-..+..-... ......++ -+|++.+.|+... .+.-.+|..+|..+++
T Consensus 424 ~~~W~~~~~m~~~--r~~~~~~v--~~~~IYviGG~~~------~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 424 SNTWTLIDDPIYP--RDNPELII--VDNKLLLIGGFYR------GSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCcEeEcCCCCCC--ccccEEEE--ECCEEEEECCcCC------CcccceEEEEECCCCe
Confidence 2222222211111 01112222 3788888876410 0112467777776554
No 460
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.89 E-value=1.8e+02 Score=32.12 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=41.4
Q ss_pred EEEEeCCCCeEEEEecCCCcEEEeecCCCe--EEEEE---cCCcEEEEEEcCCceEEEEecCCCCccEEEEecC
Q 011970 190 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSI---SDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIE 258 (474)
Q Consensus 190 ~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~--~l~tl---~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~ 258 (474)
.|-|++.|-+++|.-| |-+-=|-++... ..-++ ..+.|.+|+||||.++++-.+. |++|.+.+..
T Consensus 27 gvFfDDaNkqlfavrS--ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~--~~~v~f~nf~ 96 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRS--GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRT--SKTVDFCNFI 96 (657)
T ss_pred ceeeccCcceEEEEec--CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEec--CceEEEEecC
Confidence 4778877776666544 334455544322 11122 2358999999987777766643 7899999873
No 461
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=53.60 E-value=2.6e+02 Score=28.54 Aligned_cols=102 Identities=15% Similarity=0.079 Sum_probs=62.6
Q ss_pred EeecCCCccceeeeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEec------CCCcEEEeecCCCeEE
Q 011970 148 SVYASDNFSSLKCRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSA------QDSIYKVFDLKNYTML 221 (474)
Q Consensus 148 S~~~s~d~s~Lk~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s------~D~tiKlWdl~tg~~l 221 (474)
+.|...+ +|.|..+-+||+...+... +..+-.+-|..+.|. .+.++|+.|. ....+-.||+++.+-
T Consensus 5 G~F~~aG--sL~C~~lC~yd~~~~qW~~----~g~~i~G~V~~l~~~-~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w- 76 (281)
T PF12768_consen 5 GSFTSAG--SLPCPGLCLYDTDNSQWSS----PGNGISGTVTDLQWA-SNNQLLVGGNFTLNGTNSSNLATYDFKNQTW- 76 (281)
T ss_pred eecCCCC--CcCCCEEEEEECCCCEeec----CCCCceEEEEEEEEe-cCCEEEEEEeeEECCCCceeEEEEecCCCee-
Confidence 3344444 6889999999988888633 222212345578886 4778888876 466788899887653
Q ss_pred EEEcC-------CcEEEEEEc--C-CceEEEEecCCCCccEEEEec
Q 011970 222 YSISD-------KHVQEIKIS--P-GIMLLIFNRSSSHVPLKILSI 257 (474)
Q Consensus 222 ~tl~~-------~~V~~vafS--p-g~~la~~s~~s~D~tIkLWdi 257 (474)
.++.. ..|..+.+. + +...+.+....++..|.-||=
T Consensus 77 ~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 77 SSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred eecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcC
Confidence 22222 467777774 3 334444433333445777863
No 462
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=52.61 E-value=2.2e+02 Score=29.16 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=56.3
Q ss_pred CcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEc---CC----cEEEEeCCCcEEEEeccCC-CCcCCCCeeEE
Q 011970 293 ENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFR---NR----TVAVWNFRGELVTSFEDHL-LWHPDCNTNNI 364 (474)
Q Consensus 293 ~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~s---D~----tIklWd~~G~ll~tl~gH~-~~~~~~~v~sv 364 (474)
..|-+||..+.+-.....+=.+.|.++.|..+.++++.|+ ++ .+..||++.+-..++.+-. ...+. .|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg-pv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG-PVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC-cEEEE
Confidence 4578999988887777666667899999999999999885 33 6889999877676776632 22222 24455
Q ss_pred EE-CCCCC-EEEEE
Q 011970 365 YI-TSDQD-LIISY 376 (474)
Q Consensus 365 af-SpDg~-~LaS~ 376 (474)
.+ ..|+. +.+.|
T Consensus 95 ~~~~~d~~~~~~aG 108 (281)
T PF12768_consen 95 TFISNDGSNFWVAG 108 (281)
T ss_pred EeeccCCceEEEec
Confidence 44 33554 44444
No 463
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=52.60 E-value=2.8e+02 Score=28.59 Aligned_cols=107 Identities=11% Similarity=-0.015 Sum_probs=64.6
Q ss_pred CCCeEEEEecCCCcEEEeecCCCeEEEEEcCC----cEEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEEEeecC-
Q 011970 196 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK----HVQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKVFYHLL- 270 (474)
Q Consensus 196 ~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~----~V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~tl~~h~- 270 (474)
-||++.+. ..|+.+.-.|.++|+.+.+.... .+..=.+-.++++.+++ .++.+.-.|..+|+.+-+++...
T Consensus 67 ~dg~v~~~-~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~---~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 67 GDGTVYVG-TRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGS---WDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred eCCeEEEe-cCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEec---ccceEEEEECCCCcEEEEEecCCC
Confidence 36776664 56777777788888766533311 11111122256666653 35578888988999998888544
Q ss_pred cceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe
Q 011970 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV 308 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~ 308 (474)
....+... ..++.+...+.|+.+.-.|..+|+.+-.
T Consensus 143 ~~~~~~~v--~~~~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 143 PYYASPPV--VGDGTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred eEEecCcE--EcCcEEEEecCCCeEEEEEccCCcEEEE
Confidence 11111121 1245555556789999889888887543
No 464
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=49.97 E-value=4.2e+02 Score=29.78 Aligned_cols=179 Identities=9% Similarity=0.017 Sum_probs=90.2
Q ss_pred eeEEEEeEeccCCCCCccceeeeccccCceEEEEeCCCCeEEEEecCC------CcEEEeecCCCeEEE--EEcCC-cEE
Q 011970 160 CRSTKIEYIRRGKPDSGFALFESESLKWPGFVEFDDVNGKVLTYSAQD------SIYKVFDLKNYTMLY--SISDK-HVQ 230 (474)
Q Consensus 160 ~~~~~iw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~~nGk~LaS~s~D------~tiKlWdl~tg~~l~--tl~~~-~V~ 230 (474)
+..+...|..+++.....++-.. .. ...+++- +|++-+.|+.| .++-.+|..+.+=.. .+... .=-
T Consensus 300 ~~~ve~yd~~~~~w~~~a~m~~~--r~-~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~ 374 (571)
T KOG4441|consen 300 LRSVECYDPKTNEWSSLAPMPSP--RC-RVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF 374 (571)
T ss_pred cceeEEecCCcCcEeecCCCCcc--cc-cccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc
Confidence 45666777777765222122211 11 2246664 78999999999 355566666554111 11111 112
Q ss_pred EEEEcCCceEEEEecCCC--CccEEEEecCCCeEEEEEeecCcceeEEEEEecCCCeEEEEeCC------CcEEEEECCC
Q 011970 231 EIKISPGIMLLIFNRSSS--HVPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQFNEKLLVKQEN------ENLQILDVRN 302 (474)
Q Consensus 231 ~vafSpg~~la~~s~~s~--D~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~~~~D------~tIkIWDv~t 302 (474)
+++.-.|.+.|+++.++. -.+|..+|.++-+--..-. .........-..-.+...++||.| .++..+|..+
T Consensus 375 ~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t 453 (571)
T KOG4441|consen 375 GVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPET 453 (571)
T ss_pred eeEEECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCC
Confidence 333345667777644311 1357888877644321111 111222222222223444446643 5678999999
Q ss_pred CceEEeccccCCceEEEEEcCCCcEEEEEc-CC-----cEEEEeCCCc
Q 011970 303 AELMEVSRTEFMTPSAFIFLYENQLFLTFR-NR-----TVAVWNFRGE 344 (474)
Q Consensus 303 g~~~~~l~~h~~~v~sv~Fspdg~llaS~s-D~-----tIklWd~~G~ 344 (474)
++......--......-+-..++.+.+-|+ |+ +|..+|.+.+
T Consensus 454 ~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 454 NTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred CceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCC
Confidence 886543211111111112345777888877 65 3788888533
No 465
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=48.94 E-value=4.4e+02 Score=29.72 Aligned_cols=173 Identities=14% Similarity=0.088 Sum_probs=0.0
Q ss_pred ceEEEEeCCCCeEEEEecCC---------CcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEecCCCCccEEEEecC
Q 011970 188 PGFVEFDDVNGKVLTYSAQD---------SIYKVFDLKNYTMLYSISDKHVQEIKISPGIMLLIFNRSSSHVPLKILSIE 258 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D---------~tiKlWdl~tg~~l~tl~~~~V~~vafSpg~~la~~s~~s~D~tIkLWdi~ 258 (474)
+..+.++ |.|..++..... ..+-+=|.++ ..+...+..+.++.|||++..+.......+....+|-+.
T Consensus 15 ~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~ 91 (620)
T COG1506 15 VSDPRVS-PPGGRLAYILTGLDFLKPLYKSSLWVSDGKT--VRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVD 91 (620)
T ss_pred ccCcccC-CCCceeEEeeccccccccccccceEEEeccc--ccccccCCcccccccCCCCCEEEEEeccCCCcceEEEEe
Q ss_pred CCeEEEEEeecCcceeEEEEEecCCCeEEE---------------------------EeCCCcEEEEECCCCceEEeccc
Q 011970 259 DGTVLKVFYHLLHRNKKVDFIEQFNEKLLV---------------------------KQENENLQILDVRNAELMEVSRT 311 (474)
Q Consensus 259 tG~~L~tl~~h~~~v~~V~F~~~~~~~ll~---------------------------~~~D~tIkIWDv~tg~~~~~l~~ 311 (474)
.+. -...+...+....++ +.+..++. +++...+.+-|..+ .......
T Consensus 92 ~~g---~~~~~~~~v~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~--~~~~~~~ 165 (620)
T COG1506 92 VGG---LITKTAFGVSDARWS-PDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIES--KLIKLGL 165 (620)
T ss_pred cCC---ceeeeecccccceeC-CCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCc--ccccccC
Q ss_pred cCCceEEEEEcCCCcEEEEEc-CCc-------EEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEE
Q 011970 312 EFMTPSAFIFLYENQLFLTFR-NRT-------VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLII 374 (474)
Q Consensus 312 h~~~v~sv~Fspdg~llaS~s-D~t-------IklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~La 374 (474)
....+..+++.+++..++... +.. ..++......+.++...... +..++|.+||+.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~gk~~~ 231 (620)
T COG1506 166 GNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGELESLTPGEGS-----ISKLAFDADGKSIA 231 (620)
T ss_pred CCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCceEEEcCCCce-----eeeeeeCCCCCeeE
No 466
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=48.25 E-value=48 Score=21.63 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=20.0
Q ss_pred CceEEEEEcCCCcEEEEEc-CCcEEE
Q 011970 314 MTPSAFIFLYENQLFLTFR-NRTVAV 338 (474)
Q Consensus 314 ~~v~sv~Fspdg~llaS~s-D~tIkl 338 (474)
..|..++..++|+++++-+ +..|++
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEE
Confidence 3578899999999999887 766664
No 467
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.88 E-value=4.3e+02 Score=29.41 Aligned_cols=58 Identities=17% Similarity=0.117 Sum_probs=37.6
Q ss_pred CceEEEEEcCCCcEEEEEc-CCcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCC
Q 011970 314 MTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQD 371 (474)
Q Consensus 314 ~~v~sv~Fspdg~llaS~s-D~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~ 371 (474)
+.+.++.||+|++.+|.-. |.+|.+.++.|..-+-...|.-.+...++-.-.|+..-+
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e 125 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE 125 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee
Confidence 4889999999999999998 999999999643211111122222223355566665533
No 468
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=47.65 E-value=3.9e+02 Score=28.72 Aligned_cols=192 Identities=15% Similarity=0.184 Sum_probs=100.5
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeEeecCCCceEEEEEE--eeCCCE--EEEEEeecCCCccceeeeEEEEeEec--cC
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICFLNVSPDEVIRSLFY--NKNNDS--LITVSVYASDNFSSLKCRSTKIEYIR--RG 171 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~l~g~~~~~i~sv~f--spdg~~--Lis~S~~~s~d~s~Lk~~~~~iw~i~--~G 171 (474)
+-+|+....++=+.+||++ |+.+..+..+.-+.| .|.+ .-+|+. ||.+|. ..++. .+++|+-|. +|
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNV-Dvrygf~l~g~~vDlavas~-R~~g~-----n~l~~f~id~~~g 139 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNV-DVRYGFPLNGKTVDLAVASD-RSDGR-----NSLRLFRIDPDTG 139 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEE-EEEEEEEETTEEEEEEEEEE--CCCT------EEEEEEEETTTT
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeecCCCccee-eeecceecCCceEEEEEEec-CcCCC-----CeEEEEEecCCCC
Confidence 5567777778889999987 999999974332222 2222 235665 555553 22211 256666663 34
Q ss_pred CCCC----ccceeeeccccCceEEEE--eCCCCeEEEE-ecCCCcEEEeecC---CC----eEEEEEc-CCcEEEEEEcC
Q 011970 172 KPDS----GFALFESESLKWPGFVEF--DDVNGKVLTY-SAQDSIYKVFDLK---NY----TMLYSIS-DKHVQEIKISP 236 (474)
Q Consensus 172 ~~~~----~~~lf~~~~~~~~~~V~F--s~~nGk~LaS-~s~D~tiKlWdl~---tg----~~l~tl~-~~~V~~vafSp 236 (474)
.+.. ..++.+ ...-+..+++ ++.+|++.|. ...+|.+..|-|. +| ++++.|. ...+..++.-+
T Consensus 140 ~L~~v~~~~~p~~~--~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDD 217 (381)
T PF02333_consen 140 ELTDVTDPAAPIAT--DLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDD 217 (381)
T ss_dssp EEEE-CBTTC-EE---SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEET
T ss_pred cceEcCCCCccccc--ccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEec
Confidence 4310 112211 1222334554 4456775444 4467766666553 44 3567776 46788899986
Q ss_pred -CceEEEEecCCCCccEEEEecC-----CCeEEEEEee--cCcceeEEEEEecC--CCeEEEE-eCCCcEEEEECCC
Q 011970 237 -GIMLLIFNRSSSHVPLKILSIE-----DGTVLKVFYH--LLHRNKKVDFIEQF--NEKLLVK-QENENLQILDVRN 302 (474)
Q Consensus 237 -g~~la~~s~~s~D~tIkLWdi~-----tG~~L~tl~~--h~~~v~~V~F~~~~--~~~ll~~-~~D~tIkIWDv~t 302 (474)
.+.|.++. ++.-|.-++.+ +++.+....+ +..-+..++..... .++|+++ |.|++..+||.+.
T Consensus 218 e~g~LYvgE---E~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 218 ETGRLYVGE---EDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp TTTEEEEEE---TTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred ccCCEEEec---CccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 66776663 34445444554 2344444332 34566777775322 2577775 6899999999664
No 469
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=47.15 E-value=86 Score=30.96 Aligned_cols=56 Identities=16% Similarity=0.252 Sum_probs=39.2
Q ss_pred ceEEEEEcCCCcEEEEEcCCcEEEEeCC---CcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 011970 315 TPSAFIFLYENQLFLTFRNRTVAVWNFR---GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 376 (474)
Q Consensus 315 ~v~sv~Fspdg~llaS~sD~tIklWd~~---G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~ 376 (474)
.|..+.=++...||++.+...|.+|++. .+++.+|.-- +. |..++.++-|+||++=
T Consensus 19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~-----V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GR-----VLQLVYSEAGDYLVTL 77 (215)
T ss_pred CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hh-----eeEEEeccccceEEEE
Confidence 3444544554556665557789999985 3456777643 22 6899999999999985
No 470
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=46.84 E-value=3.5e+02 Score=27.97 Aligned_cols=123 Identities=10% Similarity=0.035 Sum_probs=64.9
Q ss_pred cceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCCCcEEEEec
Q 011970 271 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFE 350 (474)
Q Consensus 271 ~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~G~ll~tl~ 350 (474)
..+..+..+ +++.++++++..+-.+-||--...-....+.-...+.++.|.||+.+.+.+..+.|+.=+. +.-..++.
T Consensus 145 gs~~~~~r~-~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~-~~~~~~w~ 222 (302)
T PF14870_consen 145 GSINDITRS-SDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDD-PDDGETWS 222 (302)
T ss_dssp --EEEEEE--TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE--TTEEEEE-
T ss_pred ceeEeEEEC-CCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccC-CCCccccc
Confidence 344555544 5566666676777778888543333333344567899999999999988888888887772 22222333
Q ss_pred cCCCCc--CCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEec
Q 011970 351 DHLLWH--PDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKIN 408 (474)
Q Consensus 351 gH~~~~--~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~ 408 (474)
.+.... ..-.+.++++.|++++.|+|. .|++-... .-||--++-+
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg------------~G~l~~S~-DgGktW~~~~ 269 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAVGG------------SGTLLVST-DGGKTWQKDR 269 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEEES------------TT-EEEES-STTSS-EE-G
T ss_pred cccCCcccCceeeEEEEecCCCCEEEEeC------------CccEEEeC-CCCccceECc
Confidence 322211 111367899999999999875 56664433 4566555443
No 471
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=45.91 E-value=90 Score=31.99 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=34.3
Q ss_pred eeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeEEEEecCC
Q 011970 361 TNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKCLAKINAT 410 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~cl~tl~gH 410 (474)
+|+|.-.++|++|+|.=. -.+|-+-|-.||+.+..|.|.
T Consensus 146 iNsV~~~~~G~yLiS~R~-----------~~~i~~I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRN-----------TSTIYKIDPSTGKIIWRLGGK 184 (299)
T ss_pred eeeeeecCCccEEEEecc-----------cCEEEEEECCCCcEEEEeCCC
Confidence 789999999999999654 678888898999999999876
No 472
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=44.73 E-value=78 Score=24.51 Aligned_cols=19 Identities=11% Similarity=0.053 Sum_probs=15.8
Q ss_pred eEEEEEEeeCCCEEEEEEe
Q 011970 131 VIRSLFYNKNNDSLITVSV 149 (474)
Q Consensus 131 ~i~sv~fspdg~~Lis~S~ 149 (474)
.+++++..|||+.|+.++.
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 4789999999998887653
No 473
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=43.59 E-value=36 Score=23.65 Aligned_cols=27 Identities=15% Similarity=0.173 Sum_probs=22.1
Q ss_pred EEEEeeCCCeEEeeeccccceeeEeec
Q 011970 100 IVFALAHSGVCAAFSRETNRRICFLNV 126 (474)
Q Consensus 100 ~las~s~dgtiklW~~~tg~~l~~l~g 126 (474)
.|+.++.||.+...|..||+.+=..+-
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 466679999999999999998765553
No 474
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=43.58 E-value=1.5e+02 Score=25.07 Aligned_cols=76 Identities=8% Similarity=0.129 Sum_probs=38.5
Q ss_pred eEEEECCC-CCEEEEEecCCCccc------cccCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccCCCCCCcccccccc
Q 011970 362 NNIYITSD-QDLIISYCKAEPEDQ------WMEGSAGSINVSSILTGKCLAKINATNCSPKVDDELGSSSTGKSKKLNKS 434 (474)
Q Consensus 362 ~svafSpD-g~~LaS~s~~~~~~~------~~~s~DgtIklWdi~tG~cl~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 434 (474)
|.+++.+| |.+..|-+.+.=+.. ..+..+|.+--+|..|++.---+.+-.
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~----------------------- 57 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLY----------------------- 57 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEES-----------------------
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCC-----------------------
Confidence 35778887 777776442110101 334456788888888877544444432
Q ss_pred ccccccccccccCEEEEEEcCCCCEEE-EE-cCCCcEEEc
Q 011970 435 SYIRSTVGEALEDITSLFYDEERNEIY-TG-NRHGLVHVW 472 (474)
Q Consensus 435 ~~~~~~~~~~l~~V~slafSpDg~~La-Sg-s~DgtVklW 472 (474)
.=..|++|||++.|+ +- ..-.-.|.|
T Consensus 58 ------------fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 58 ------------FPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp ------------SEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred ------------ccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 345799999999644 32 233344444
No 475
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=43.22 E-value=62 Score=21.04 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=21.4
Q ss_pred ccEEEEeeCCCeEEeeeccccceeeE
Q 011970 98 RDIVFALAHSGVCAAFSRETNRRICF 123 (474)
Q Consensus 98 ~~~las~s~dgtiklW~~~tg~~l~~ 123 (474)
+.+|+.++.+|.+...|.++|+.+-.
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEE
Confidence 45788899999999999998887643
No 476
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=43.09 E-value=4.3e+02 Score=27.91 Aligned_cols=129 Identities=13% Similarity=0.171 Sum_probs=72.6
Q ss_pred CceEEEEeCCCCe--EEEEecCCCcEEEeec--CCCeEEEEEcCCcEE--EEEE--cC---CceEEEEecCCCCccEEEE
Q 011970 187 WPGFVEFDDVNGK--VLTYSAQDSIYKVFDL--KNYTMLYSISDKHVQ--EIKI--SP---GIMLLIFNRSSSHVPLKIL 255 (474)
Q Consensus 187 ~~~~V~Fs~~nGk--~LaS~s~D~tiKlWdl--~tg~~l~tl~~~~V~--~vaf--Sp---g~~la~~s~~s~D~tIkLW 255 (474)
|...+|+. ||+ +++..|+-.+..-|.- .+|=++..+..+.|- .++| || ++.|-.. ++..+.|.-+
T Consensus 153 HLNGlA~~--~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRWhdgrLwvl--dsgtGev~~v 228 (335)
T TIGR03032 153 HLNGMALD--DGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRWYQGKLWLL--NSGRGELGYV 228 (335)
T ss_pred eecceeee--CCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCEEEcCccCCcCCcEeCCeEEEE--ECCCCEEEEE
Confidence 33367774 564 4555555444555542 233344444433322 1222 24 5556555 3557889889
Q ss_pred ecCCCeE--EEEEeecCcceeEEEEEecCCCeEEEE-e---CCC----------------cEEEEECCCCceEEec--cc
Q 011970 256 SIEDGTV--LKVFYHLLHRNKKVDFIEQFNEKLLVK-Q---ENE----------------NLQILDVRNAELMEVS--RT 311 (474)
Q Consensus 256 di~tG~~--L~tl~~h~~~v~~V~F~~~~~~~ll~~-~---~D~----------------tIkIWDv~tg~~~~~l--~~ 311 (474)
|.++|+. +..+. +....++|. |..++++ | +++ -|.+-|++||+.+..+ .+
T Consensus 229 D~~~G~~e~Va~vp---G~~rGL~f~---G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg 302 (335)
T TIGR03032 229 DPQAGKFQPVAFLP---GFTRGLAFA---GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEG 302 (335)
T ss_pred cCCCCcEEEEEECC---CCCccccee---CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCC
Confidence 9888854 44444 456778876 5666555 2 233 3567788888877653 34
Q ss_pred cCCceEEEEEcCCC
Q 011970 312 EFMTPSAFIFLYEN 325 (474)
Q Consensus 312 h~~~v~sv~Fspdg 325 (474)
--..+..|+..|+=
T Consensus 303 ~v~EifdV~vLPg~ 316 (335)
T TIGR03032 303 VIEEIYDVAVLPGV 316 (335)
T ss_pred ceeEEEEEEEecCC
Confidence 44566677776653
No 477
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.88 E-value=6.2e+02 Score=29.72 Aligned_cols=202 Identities=14% Similarity=0.140 Sum_probs=105.1
Q ss_pred eeeccccCceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEc-C-CcEEEEEEcCCceEEEEecCCCCccEEEEec
Q 011970 180 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-D-KHVQEIKISPGIMLLIFNRSSSHVPLKILSI 257 (474)
Q Consensus 180 f~~~~~~~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~-~-~~V~~vafSpg~~la~~s~~s~D~tIkLWdi 257 (474)
|.....+-|-+|+.+|.+=+-+. +.--.|+|++. +|++|.++- . ..+-..-||.+..|+.-+. |+++.+.++
T Consensus 38 fa~Ap~gGpIAV~r~p~~~~~~~--~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k---~g~v~Vy~~ 111 (829)
T KOG2280|consen 38 FACAPFGGPIAVTRSPSKLVPLY--SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQK---DGTVHVYGL 111 (829)
T ss_pred EEecccCCceEEEeccccccccc--ccceeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEec---cceEEEeec
Confidence 43333444557777742222222 44566899995 788877654 2 3666777888777777744 689999997
Q ss_pred CCCeEEEEE----eecCcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEe--ccccCCceEEEE-EcCCCcEEEE
Q 011970 258 EDGTVLKVF----YHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEV--SRTEFMTPSAFI-FLYENQLFLT 330 (474)
Q Consensus 258 ~tG~~L~tl----~~h~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~--l~~h~~~v~sv~-Fspdg~llaS 330 (474)
-|+.+..+ +.....|....|.. +|..+-...+.-+.+=++..-.+.+. ..+..+...+.. |-|.-+.-.-
T Consensus 112 -~ge~ie~~svg~e~~~~~I~ec~~f~--~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~l 188 (829)
T KOG2280|consen 112 -LGEFIESNSVGFESQMSDIVECRFFH--NGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTIL 188 (829)
T ss_pred -chhhhcccccccccccCceeEEEEec--CceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeE
Confidence 45555442 12233455555542 44444344443444433332221111 011112212221 2222221110
Q ss_pred Ec-CCcEEEEeC-CCcE-----EEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCCeE
Q 011970 331 FR-NRTVAVWNF-RGEL-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTGKC 403 (474)
Q Consensus 331 ~s-D~tIklWd~-~G~l-----l~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG~c 403 (474)
-. |.+| +-.+ ++++ ..--.+|+. +-.+.+||+.++||-+.. +|.|.+=++..-+|
T Consensus 189 l~v~~~v-~~~~~q~~~~~~q~~~~~~~~~~------~~ki~VS~n~~~laLyt~-----------~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 189 LDVDVAV-GLHICQVEESRVQLHALSWPNSS------VVKISVSPNRRFLALYTE-----------TGKIWVVSIDLSQI 250 (829)
T ss_pred Eeechhh-hhcccceecccccccccCCCCce------EEEEEEcCCcceEEEEec-----------CCcEEEEecchhhh
Confidence 11 2111 0111 1221 111122333 467999999999999976 89998888888888
Q ss_pred EEEec
Q 011970 404 LAKIN 408 (474)
Q Consensus 404 l~tl~ 408 (474)
+-+++
T Consensus 251 lce~~ 255 (829)
T KOG2280|consen 251 LCEFN 255 (829)
T ss_pred hhccC
Confidence 87776
No 478
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=39.32 E-value=4.7e+02 Score=29.57 Aligned_cols=129 Identities=16% Similarity=0.186 Sum_probs=78.3
Q ss_pred ccEEEEecCCCeEEEEEeecCcceeEEEEEecC------CCeEEEEeCCCcEEEEECC-CCceEEeccccCCceEEEEEc
Q 011970 250 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIEQF------NEKLLVKQENENLQILDVR-NAELMEVSRTEFMTPSAFIFL 322 (474)
Q Consensus 250 ~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~~~------~~~ll~~~~D~tIkIWDv~-tg~~~~~l~~h~~~v~sv~Fs 322 (474)
..+.=-||+-|+++-+..-|.. | -|.|.|.+ +++.|+|-.|..|--.|.+ .|..+.+-.. .+.+..--||
T Consensus 490 ~kLykmDIErGkvveeW~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es-KdY~tKn~Fs 566 (776)
T COG5167 490 DKLYKMDIERGKVVEEWDLKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES-KDYKTKNKFS 566 (776)
T ss_pred ccceeeecccceeeeEeecCCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee-hhcccccccc
Confidence 4566679999999888875533 2 56665432 3677787555555444654 4544433111 1112222233
Q ss_pred ----CCCcEEEEEc-CCcEEEEeCCCcEEEE-eccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEE
Q 011970 323 ----YENQLFLTFR-NRTVAVWNFRGELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVS 396 (474)
Q Consensus 323 ----pdg~llaS~s-D~tIklWd~~G~ll~t-l~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklW 396 (474)
-++-++|.+| -|-|||+|-=|..-+| |.+-... +..|..+.+|++|+..|+ .+|-|=
T Consensus 567 s~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~a-----Ik~idvta~Gk~ilaTCk------------~yllL~ 629 (776)
T COG5167 567 SGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDA-----IKHIDVTANGKHILATCK------------NYLLLT 629 (776)
T ss_pred ccccccCceEEEecCCCceeeehhhcchhhhcCcccccc-----eeeeEeecCCcEEEEeec------------ceEEEE
Confidence 3445677777 9999999964554333 3333332 678899999999999885 567776
Q ss_pred eC
Q 011970 397 SI 398 (474)
Q Consensus 397 di 398 (474)
|+
T Consensus 630 d~ 631 (776)
T COG5167 630 DV 631 (776)
T ss_pred ec
Confidence 65
No 479
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=38.89 E-value=5.8e+02 Score=29.66 Aligned_cols=28 Identities=4% Similarity=0.115 Sum_probs=24.4
Q ss_pred CEEEEEEcCCC---CEEEEEcCCCcEEEccC
Q 011970 447 DITSLFYDEER---NEIYTGNRHGLVHVWSN 474 (474)
Q Consensus 447 ~V~slafSpDg---~~LaSgs~DgtVklWd~ 474 (474)
.|..+.|+|.+ .+|+-=..|+++|++|.
T Consensus 148 ~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~ 178 (717)
T PF10168_consen 148 EIKQVRWHPWSESDSHLVVLTSDNTLRLYDI 178 (717)
T ss_pred eEEEEEEcCCCCCCCeEEEEecCCEEEEEec
Confidence 78899999984 78888889999999974
No 480
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=38.86 E-value=86 Score=34.86 Aligned_cols=17 Identities=12% Similarity=0.429 Sum_probs=14.7
Q ss_pred CEEEEEEcCCCCEEEEE
Q 011970 447 DITSLFYDEERNEIYTG 463 (474)
Q Consensus 447 ~V~slafSpDg~~LaSg 463 (474)
.++.+.|+|||++|.-.
T Consensus 503 E~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 503 EITGPCFSPDGRTLFVN 519 (524)
T ss_pred ccccceECCCCCEEEEE
Confidence 78999999999998653
No 481
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=37.31 E-value=2.1e+02 Score=31.73 Aligned_cols=95 Identities=20% Similarity=0.219 Sum_probs=54.4
Q ss_pred CeEEEEeCCCcEEEE-ECCCCceEEeccccCCceEEEEEc--------CC--CcEEEEEc-CCcEEEEeCCCcEEEEecc
Q 011970 284 EKLLVKQENENLQIL-DVRNAELMEVSRTEFMTPSAFIFL--------YE--NQLFLTFR-NRTVAVWNFRGELVTSFED 351 (474)
Q Consensus 284 ~~ll~~~~D~tIkIW-Dv~tg~~~~~l~~h~~~v~sv~Fs--------pd--g~llaS~s-D~tIklWd~~G~ll~tl~g 351 (474)
-.|++..+||-|--| |++.+-- .|...++.+.|. || -+-|++.+ +|+..+.....+..--++-
T Consensus 281 ~SLLv~~~dG~vsQWFdvr~~~~-----p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~ 355 (733)
T COG4590 281 FSLLVVHEDGLVSQWFDVRRDGQ-----PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER 355 (733)
T ss_pred eeEEEEcCCCceeeeeeeecCCC-----CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh
Confidence 467788899999877 7664321 122223333332 33 33466666 7777777654221111111
Q ss_pred CCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 352 HLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 352 H~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
-... ..-+++||.+.+|++.. .|.|++..+.+
T Consensus 356 ~~~~-----~~~~~~Sp~~~~Ll~e~------------~gki~~~~l~N 387 (733)
T COG4590 356 AYQA-----PQLVAMSPNQAYLLSED------------QGKIRLAQLEN 387 (733)
T ss_pred hhcC-----cceeeeCcccchheeec------------CCceEEEEecC
Confidence 1111 24589999999999864 57788877643
No 482
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=37.30 E-value=1.3e+02 Score=35.01 Aligned_cols=67 Identities=13% Similarity=0.105 Sum_probs=45.2
Q ss_pred hhhhhhcccccceeecccCCCCCcccccccccccccEEEEEee--ccEEEEeeCCCeEEeeecccccee
Q 011970 55 NAQERFRNMHLVEEYDTHDPKGHCPFVLPFLMKRTKVIEIVAA--RDIVFALAHSGVCAAFSRETNRRI 121 (474)
Q Consensus 55 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~s--~~~las~s~dgtiklW~~~tg~~l 121 (474)
..+..|..++-......-.++........++.....|.+|... +-.|+..-+||+|.+.|+.|=+.+
T Consensus 226 ~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~ 294 (753)
T PF11635_consen 226 PLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKEL 294 (753)
T ss_pred ccchhhhhcCCCCcCCCCCCCceeEEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhh
Confidence 3445555555333333344444555556666777889999888 778999999999999998855444
No 483
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.73 E-value=6.4e+02 Score=30.51 Aligned_cols=28 Identities=18% Similarity=0.385 Sum_probs=23.6
Q ss_pred ceEEEEeCCCCeEEEEecCCCcEEEeecC
Q 011970 188 PGFVEFDDVNGKVLTYSAQDSIYKVFDLK 216 (474)
Q Consensus 188 ~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~ 216 (474)
+..++|| |.-+.||-+...|.|++.-..
T Consensus 38 ~~~~afD-~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 38 PSALAFD-PTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred Ccceeec-cccceEEEEEecccEEEeccc
Confidence 4468998 788899999999999999743
No 484
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=35.02 E-value=6e+02 Score=27.29 Aligned_cols=118 Identities=18% Similarity=0.275 Sum_probs=66.7
Q ss_pred ccEEEEecCCCeEEEEEeecCcceeEEEEEe---cCCCe--EEEEe--CC--CcEEEEEC--CCCceEEecc------cc
Q 011970 250 VPLKILSIEDGTVLKVFYHLLHRNKKVDFIE---QFNEK--LLVKQ--EN--ENLQILDV--RNAELMEVSR------TE 312 (474)
Q Consensus 250 ~tIkLWdi~tG~~L~tl~~h~~~v~~V~F~~---~~~~~--ll~~~--~D--~tIkIWDv--~tg~~~~~l~------~h 312 (474)
.-+.++|+ +|+.++.++. ++...|+... -.+++ |++.+ .+ .+|+||-+ .++.+..+.. ..
T Consensus 78 ~GL~VYdL-~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~ 154 (381)
T PF02333_consen 78 GGLYVYDL-DGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIATD 154 (381)
T ss_dssp TEEEEEET-TS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-S
T ss_pred CCEEEEcC-CCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCcccccc
Confidence 56889997 6888888862 4566666531 12333 44544 22 57999955 4676654421 12
Q ss_pred CCceEEEEE--cC-CCcEEEEEc--CCcEEEEeC--C--C----cEEEEeccCCCCcCCCCeeEEEECCCCCEEEEE
Q 011970 313 FMTPSAFIF--LY-ENQLFLTFR--NRTVAVWNF--R--G----ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 376 (474)
Q Consensus 313 ~~~v~sv~F--sp-dg~llaS~s--D~tIklWd~--~--G----~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~ 376 (474)
...++.+++ +| +|++.+-.+ +|.+..|-+ + | +++++|..-.. +..++.-....+|.-+
T Consensus 155 ~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ------~EGCVVDDe~g~LYvg 225 (381)
T PF02333_consen 155 LSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQ------PEGCVVDDETGRLYVG 225 (381)
T ss_dssp SSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-------EEEEEEETTTTEEEEE
T ss_pred cccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCc------ceEEEEecccCCEEEe
Confidence 235788886 33 577655543 898887776 2 3 46888875442 5677777766666654
No 485
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=34.98 E-value=1.9e+02 Score=24.32 Aligned_cols=50 Identities=20% Similarity=0.137 Sum_probs=0.0
Q ss_pred CcEEEEeCCCcEEEEeccCCCCcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCC
Q 011970 334 RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILT 400 (474)
Q Consensus 334 ~tIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~t 400 (474)
+.|--||. +++....++-... |.|+++||+++|.-++. ..++|.++..+.
T Consensus 36 ~~Vvyyd~-~~~~~va~g~~~a------NGI~~s~~~k~lyVa~~----------~~~~I~vy~~~~ 85 (86)
T PF01731_consen 36 GNVVYYDG-KEVKVVASGFSFA------NGIAISPDKKYLYVASS----------LAHSIHVYKRHK 85 (86)
T ss_pred ceEEEEeC-CEeEEeeccCCCC------ceEEEcCCCCEEEEEec----------cCCeEEEEEecC
No 486
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=33.89 E-value=7.2e+02 Score=28.46 Aligned_cols=153 Identities=11% Similarity=0.194 Sum_probs=81.2
Q ss_pred EEeecCcceeEEEEEecCCCeEEEEe---CCCcEEEEECCCCceEEeccccCCceEEEEEcCC----CcEEEEEc-CCcE
Q 011970 265 VFYHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNAELMEVSRTEFMTPSAFIFLYE----NQLFLTFR-NRTV 336 (474)
Q Consensus 265 tl~~h~~~v~~V~F~~~~~~~ll~~~---~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspd----g~llaS~s-D~tI 336 (474)
.|....|++..++|- ||.+++-.. .+|.+|.=|- ..-|++..|..+.|.|- --.|+.-. ...|
T Consensus 14 aL~qAiHPvhGlaWT--DGkqVvLT~L~l~~gE~kfGds-------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhV 84 (671)
T PF15390_consen 14 ALHQAIHPVHGLAWT--DGKQVVLTDLQLHNGEPKFGDS-------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHV 84 (671)
T ss_pred HHHhhhccccceEec--CCCEEEEEeeeeeCCccccCCc-------cEeeccceeeeeeecCcccCCCCceEEEeccceE
Confidence 344456788888884 454444332 3333333221 12467778899999875 42444445 8899
Q ss_pred EEEeCC------CcEEEEeccCCC-CcCCCCeeEEEECCCCCEEEEEecCCCccccccCCCCeEEEEeCCCC--eEEEEe
Q 011970 337 AVWNFR------GELVTSFEDHLL-WHPDCNTNNIYITSDQDLIISYCKAEPEDQWMEGSAGSINVSSILTG--KCLAKI 407 (474)
Q Consensus 337 klWd~~------G~ll~tl~gH~~-~~~~~~v~svafSpDg~~LaS~s~~~~~~~~~~s~DgtIklWdi~tG--~cl~tl 407 (474)
.||.+. ++++.+-..+.. ..|-. =..+.|+|....|+-=.. .|-+| +.++... +..+.+
T Consensus 85 tVWqL~~s~~e~~K~l~sQtcEi~e~~pvL-pQGCVWHPk~~iL~VLT~----------~dvSV-~~sV~~d~srVkaDi 152 (671)
T PF15390_consen 85 TVWQLCPSTTERNKLLMSQTCEIREPFPVL-PQGCVWHPKKAILTVLTA----------RDVSV-LPSVHCDSSRVKADI 152 (671)
T ss_pred EEEEeccCccccccceeeeeeeccCCcccC-CCcccccCCCceEEEEec----------CceeE-eeeeeeCCceEEEec
Confidence 999962 344443333221 00000 023456676666664332 13222 3333221 122233
Q ss_pred cCCCCCCCCccccCCCCCCccccccccccccccccccccCEEEEEEcCCCCEEEEEcCCC-cEEEcc
Q 011970 408 NATNCSPKVDDELGSSSTGKSKKLNKSSYIRSTVGEALEDITSLFYDEERNEIYTGNRHG-LVHVWS 473 (474)
Q Consensus 408 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~slafSpDg~~LaSgs~Dg-tVklWd 473 (474)
+++. .|.+..|.+||+.|+-|-... .-.+||
T Consensus 153 ~~~G-----------------------------------~IhCACWT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 153 KTSG-----------------------------------LIHCACWTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred cCCc-----------------------------------eEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence 3322 799999999999988664332 235676
No 487
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=33.72 E-value=2.7e+02 Score=25.78 Aligned_cols=27 Identities=7% Similarity=0.143 Sum_probs=22.9
Q ss_pred CEEEEEEcCCC------CEEEEEcCCCcEEEcc
Q 011970 447 DITSLFYDEER------NEIYTGNRHGLVHVWS 473 (474)
Q Consensus 447 ~V~slafSpDg------~~LaSgs~DgtVklWd 473 (474)
.|.++++||-| -.||.-..++.|.||.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~ 119 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYG 119 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEe
Confidence 78899999965 3688889999999985
No 488
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=33.26 E-value=5.3e+02 Score=26.13 Aligned_cols=63 Identities=8% Similarity=0.066 Sum_probs=40.4
Q ss_pred cEEEEecCCCeEEEEEeec------CcceeEEEEEecCC----CeEEEE-eCCCcEEEEECCCCceEEeccccC
Q 011970 251 PLKILSIEDGTVLKVFYHL------LHRNKKVDFIEQFN----EKLLVK-QENENLQILDVRNAELMEVSRTEF 313 (474)
Q Consensus 251 tIkLWdi~tG~~L~tl~~h------~~~v~~V~F~~~~~----~~ll~~-~~D~tIkIWDv~tg~~~~~l~~h~ 313 (474)
.|-+||++|+++++++.-. ......+.+-..++ ...-++ ....-|-++|+.+++-.+++.++.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~ 108 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSF 108 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGC
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCc
Confidence 3667899999999988732 12334455433222 233334 456789999999999888876644
No 489
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=32.87 E-value=53 Score=25.41 Aligned_cols=19 Identities=5% Similarity=0.053 Sum_probs=16.8
Q ss_pred CEEEEEEcCCCCEEEEEcC
Q 011970 447 DITSLFYDEERNEIYTGNR 465 (474)
Q Consensus 447 ~V~slafSpDg~~LaSgs~ 465 (474)
.+++++.-|||++|+.|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 5789999999999999964
No 490
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=32.61 E-value=68 Score=22.21 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=18.4
Q ss_pred EeeccEEEEeeCCCeEEeeeccc
Q 011970 95 VAARDIVFALAHSGVCAAFSRET 117 (474)
Q Consensus 95 ~~s~~~las~s~dgtiklW~~~t 117 (474)
+.+++.|+.++.||.+..+|.+|
T Consensus 18 ~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 18 AVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp EECTSEEEEE-TTSEEEEEETT-
T ss_pred EEECCEEEEEcCCCEEEEEeCCC
Confidence 56689999999999999998764
No 491
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=31.80 E-value=4.7e+02 Score=25.07 Aligned_cols=14 Identities=14% Similarity=0.541 Sum_probs=10.2
Q ss_pred CCeEEEEeCCCCeEE
Q 011970 390 AGSINVSSILTGKCL 404 (474)
Q Consensus 390 DgtIklWdi~tG~cl 404 (474)
+|.||+=| ..|..+
T Consensus 162 ~gr~r~kd-~~g~~~ 175 (179)
T PF07202_consen 162 SGRVRIKD-KDGNVI 175 (179)
T ss_pred CCcEEEec-CCCCEE
Confidence 78888887 467654
No 492
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=30.61 E-value=3.3e+02 Score=23.20 Aligned_cols=27 Identities=11% Similarity=0.274 Sum_probs=18.5
Q ss_pred CceEEEEEcCCCcEEEEEcCCcEEEEeC
Q 011970 314 MTPSAFIFLYENQLFLTFRNRTVAVWNF 341 (474)
Q Consensus 314 ~~v~sv~Fspdg~llaS~sD~tIklWd~ 341 (474)
..+..+.+.+||.+.+...++.+ ||..
T Consensus 85 ~~~~~~~L~ddGnlvl~~~~~~~-~W~S 111 (114)
T smart00108 85 NGNYVLVLLDDGNLVIYDSDGNF-LWQS 111 (114)
T ss_pred CCceEEEEeCCCCEEEECCCCCE-EeCC
Confidence 34556678899998887665554 6763
No 493
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=29.16 E-value=1.2e+02 Score=33.85 Aligned_cols=60 Identities=3% Similarity=-0.081 Sum_probs=47.7
Q ss_pred CCeEEEEeCCCcEEEEECCCCceEEeccccCCceEEEEEcCCCcEEEEEcCCcEEEEeCC
Q 011970 283 NEKLLVKQENENLQILDVRNAELMEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR 342 (474)
Q Consensus 283 ~~~ll~~~~D~tIkIWDv~tg~~~~~l~~h~~~v~sv~Fspdg~llaS~sD~tIklWd~~ 342 (474)
+++++++|..|-|||+|--.-.....+.+-...+--+.-+.+|+.+++.+..++-|-|+.
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 579999999999999994433333346666677888888999999998888889899973
No 494
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=29.14 E-value=3.8e+02 Score=23.21 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=29.4
Q ss_pred EEEeCCCcEEEEECCCCceEEec-c-ccCC-ceEEEEEcCCCcEEEEEcCCcEEEEeC
Q 011970 287 LVKQENENLQILDVRNAELMEVS-R-TEFM-TPSAFIFLYENQLFLTFRNRTVAVWNF 341 (474)
Q Consensus 287 l~~~~D~tIkIWDv~tg~~~~~l-~-~h~~-~v~sv~Fspdg~llaS~sD~tIklWd~ 341 (474)
|.=+.||.+.|+|-. +..+-.. . .... ....+.+.++|.+.+...++.+ ||..
T Consensus 23 L~l~~dGnLvl~~~~-~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~~~~-lW~S 78 (114)
T PF01453_consen 23 LILQSDGNLVLYDSN-GSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSSGNV-LWQS 78 (114)
T ss_dssp EEEETTSEEEEEETT-TEEEEE--S-TTSS-SSEEEEEETTSEEEEEETTSEE-EEES
T ss_pred ceECCCCeEEEEcCC-CCEEEEecccCCccccCeEEEEeCCCCEEEEeecceE-EEee
Confidence 333456666666633 2222111 1 1111 4566778899999887654444 7875
No 495
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=28.44 E-value=5.6e+02 Score=27.70 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=15.2
Q ss_pred eeEEEECCCCCEEEEEec
Q 011970 361 TNNIYITSDQDLIISYCK 378 (474)
Q Consensus 361 v~svafSpDg~~LaS~s~ 378 (474)
...|+|+|||++.++-+.
T Consensus 179 g~~l~f~pDG~Lyvs~G~ 196 (399)
T COG2133 179 GGRLVFGPDGKLYVTTGS 196 (399)
T ss_pred cccEEECCCCcEEEEeCC
Confidence 468999999999998754
No 496
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=27.76 E-value=62 Score=24.86 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=12.4
Q ss_pred EEEECCCCCEEEEE
Q 011970 363 NIYITSDQDLIISY 376 (474)
Q Consensus 363 svafSpDg~~LaS~ 376 (474)
-+|.++||++|+.|
T Consensus 35 i~Y~~~dg~yli~G 48 (57)
T PF10411_consen 35 ILYVDEDGRYLIQG 48 (57)
T ss_dssp EEEEETTSSEEEES
T ss_pred EEEEcCCCCEEEEe
Confidence 48899999999986
No 497
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=27.72 E-value=3.4e+02 Score=25.11 Aligned_cols=30 Identities=10% Similarity=0.164 Sum_probs=20.3
Q ss_pred CceEEEEEcCCC-----c-EEEEEc-CCcEEEEeCCC
Q 011970 314 MTPSAFIFLYEN-----Q-LFLTFR-NRTVAVWNFRG 343 (474)
Q Consensus 314 ~~v~sv~Fspdg-----~-llaS~s-D~tIklWd~~G 343 (474)
..+.+++|||-| + +||.-. ++.|.||.-.+
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378899999833 3 344445 88888888643
No 498
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=27.36 E-value=7e+02 Score=25.67 Aligned_cols=191 Identities=12% Similarity=0.037 Sum_probs=93.6
Q ss_pred eccEEEEeeCCCeEEeeeccccceeeEeecCC-CceEEEEEEeeCCCEEEEEEeecCCCccceeeeEEEEeEeccCCCCC
Q 011970 97 ARDIVFALAHSGVCAAFSRETNRRICFLNVSP-DEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTKIEYIRRGKPDS 175 (474)
Q Consensus 97 s~~~las~s~dgtiklW~~~tg~~l~~l~g~~-~~~i~sv~fspdg~~Lis~S~~~s~d~s~Lk~~~~~iw~i~~G~~~~ 175 (474)
.+..++.++.+|.+...|.++|+.+=...... ...+.+-.+-.+|+.++. + .+ .....-|..+|++
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g-~----~~------g~~y~ld~~~G~~-- 133 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVG-S----WD------GKLYALDASTGTL-- 133 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEe-c----cc------ceEEEEECCCCcE--
Confidence 37788888999999999999998652211111 122222233337874443 2 33 2333445457775
Q ss_pred ccceeeecccc---CceEEEEeCCCCeEEEEecCCCcEEEeecCCCeEEEEEcCC------cEEEEEEcCCceEEEEecC
Q 011970 176 GFALFESESLK---WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK------HVQEIKISPGIMLLIFNRS 246 (474)
Q Consensus 176 ~~~lf~~~~~~---~~~~V~Fs~~nGk~LaS~s~D~tiKlWdl~tg~~l~tl~~~------~V~~vafSpg~~la~~s~~ 246 (474)
+|...-.. +...... .||.++... .|+.+---|..||+.+.+.... ...+..+..+..++... .
T Consensus 134 ---~W~~~~~~~~~~~~~~v~--~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~-~ 206 (370)
T COG1520 134 ---VWSRNVGGSPYYASPPVV--GDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSD-G 206 (370)
T ss_pred ---EEEEecCCCeEEecCcEE--cCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecC-C
Confidence 34432111 2222222 255544433 5566666666677766553211 11111122333333321 1
Q ss_pred CCCccEEEEecCCCeEEEEEeecCccee-----EEEEEe---cCCCeEEEEeCCCcEEEEECCCCceEEe
Q 011970 247 SSHVPLKILSIEDGTVLKVFYHLLHRNK-----KVDFIE---QFNEKLLVKQENENLQILDVRNAELMEV 308 (474)
Q Consensus 247 s~D~tIkLWdi~tG~~L~tl~~h~~~v~-----~V~F~~---~~~~~ll~~~~D~tIkIWDv~tg~~~~~ 308 (474)
. +..+-=.|+++|+.+.+.+.+...-. ..++-. -.++.+..++.++.+-..|..+|+.+-.
T Consensus 207 ~-~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~ 275 (370)
T COG1520 207 Y-DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWS 275 (370)
T ss_pred C-cceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEE
Confidence 1 23455568888988877542211000 111100 0123445556677777778888887644
No 499
>PHA02790 Kelch-like protein; Provisional
Probab=26.90 E-value=8.4e+02 Score=26.44 Aligned_cols=138 Identities=12% Similarity=0.059 Sum_probs=71.1
Q ss_pred CCeEEEEecCC--CcEEEeecCCCeEE--EEEcCCc-EEEEEEcCCceEEEEecCCCCccEEEEecCCCeEEEE--Eeec
Q 011970 197 NGKVLTYSAQD--SIYKVFDLKNYTML--YSISDKH-VQEIKISPGIMLLIFNRSSSHVPLKILSIEDGTVLKV--FYHL 269 (474)
Q Consensus 197 nGk~LaS~s~D--~tiKlWdl~tg~~l--~tl~~~~-V~~vafSpg~~la~~s~~s~D~tIkLWdi~tG~~L~t--l~~h 269 (474)
||++.+.|+.+ .++..||..+.+-. -.++... -.+++...|...++++..+...++..+|.++.+-... +...
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~ 397 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP 397 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc
Confidence 78988888864 35778887665422 1222111 1123333566666655433335678888877654321 1110
Q ss_pred CcceeEEEEEecCCCeEEEEeCCCcEEEEECCCCceEEec--cccCCceEEEEEcCCCcEEEEEc-C-----CcEEEEeC
Q 011970 270 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNAELMEVS--RTEFMTPSAFIFLYENQLFLTFR-N-----RTVAVWNF 341 (474)
Q Consensus 270 ~~~v~~V~F~~~~~~~ll~~~~D~tIkIWDv~tg~~~~~l--~~h~~~v~sv~Fspdg~llaS~s-D-----~tIklWd~ 341 (474)
... ..++ .- +++|-+-| |.+..+|.++++-.... ........++ .-+|++.+.|+ + .+|..+|.
T Consensus 398 r~~-~~~~--~~-~~~IYv~G--G~~e~ydp~~~~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~ 469 (480)
T PHA02790 398 HYK-SCAL--VF-GRRLFLVG--RNAEFYCESSNTWTLIDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNN 469 (480)
T ss_pred ccc-ceEE--EE-CCEEEEEC--CceEEecCCCCcEeEcCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEEC
Confidence 001 1122 12 45555533 35778999887765432 1111122222 34778888886 4 35666666
Q ss_pred C
Q 011970 342 R 342 (474)
Q Consensus 342 ~ 342 (474)
+
T Consensus 470 ~ 470 (480)
T PHA02790 470 R 470 (480)
T ss_pred C
Confidence 4
No 500
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=26.69 E-value=2.2e+02 Score=24.50 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=18.1
Q ss_pred ceEEEEEcCCCcEEEEEcCCcEEEEeC
Q 011970 315 TPSAFIFLYENQLFLTFRNRTVAVWNF 341 (474)
Q Consensus 315 ~v~sv~Fspdg~llaS~sD~tIklWd~ 341 (474)
.+..+.+.+||.+.+-..++.+ ||..
T Consensus 87 ~~~~~~L~ddGnlvl~~~~~~~-~W~S 112 (116)
T cd00028 87 GNYVLVLLDDGNLVLYDSDGNF-LWQS 112 (116)
T ss_pred CceEEEEeCCCCEEEECCCCCE-EEcC
Confidence 4455667899998887766555 6763
Done!