BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011971
(474 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 308 bits (788), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 173/441 (39%), Positives = 240/441 (54%), Gaps = 31/441 (7%)
Query: 47 DRFIPSRSSSNFDLFNISQPSPNSPAVTDSHKDDNSGTYTALLRAALFGPETPEKKDVLG 106
DR+IP RS++ ++ + N P + + AL L G + E K
Sbjct: 9 DRYIPHRSAAQMEVASFLLSKENQPENSQTPTKKEHQKAWAL---NLNGFDVEEAK---- 61
Query: 107 PPSGRNIFRFKSETRRSLHSLSPFGFDDDVASGVSH-----SPVKAPRKVPRSPYKILDA 161
I R + + + P G+ + + S S K R +P P +ILDA
Sbjct: 62 ------ILRLSGKPQNA-----PEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDA 110
Query: 162 PALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGI-DDSVCSVGWANRN 220
P +++D+YLNLVDWSS NVLAV L N VYLW+A S + +L + + + SV W
Sbjct: 111 PEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG 170
Query: 221 THLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQ 280
+LAVGTS +VQ+WD + KR+R M H RV R I D+R
Sbjct: 171 NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVA 230
Query: 281 EDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW----NQHSTQPVLKYCEHTAAV 336
E V+ LSGH EVCGL+W+ D R LASGGNDN + VW + P+ + +H AV
Sbjct: 231 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAV 290
Query: 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTH 396
KA+AW P +LA+GGGT+DR IR WN + LS +D SQVC+++WS + EL+S H
Sbjct: 291 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH 350
Query: 397 GYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF---PS 453
G++QNQ+++W+YPTM+K+A L GHT RVL L +SPDG T+ + A DETLR W F P+
Sbjct: 351 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA 410
Query: 454 PKSQNTDSEIGASSLGRTTIR 474
+ + + SSL IR
Sbjct: 411 RRREREKASAAKSSLIHQGIR 431
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 303 bits (777), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 153/337 (45%), Positives = 205/337 (60%), Gaps = 8/337 (2%)
Query: 146 KAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDL 205
K R +P P +ILDAP +++D+YLNLVDWSS NVLAV L N VYLW+A S + +L +
Sbjct: 84 KTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQM 143
Query: 206 GI-DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXXXXXX 264
+ + SV W +LAVGTS +VQ+WD + KR+R M H RV
Sbjct: 144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILS 203
Query: 265 XXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW----NQ 320
R I D+R E V+ LSGH EVCGL+W+ D R LASGGNDN + VW +
Sbjct: 204 SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 263
Query: 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQV 380
P+ + +H AVKA+AW P +LA+GGGT+DR IR WN + LS +D SQV
Sbjct: 264 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV 323
Query: 381 CNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGA 440
C+++WS + EL+S HG++QNQ+++W+YPTM+K+A L GHT RVL L +SPDG T+ + A
Sbjct: 324 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 383
Query: 441 GDETLRFWNVF---PSPKSQNTDSEIGASSLGRTTIR 474
DETLR W F P+ + + + SSL IR
Sbjct: 384 ADETLRLWRCFELDPARRREREKASAAKSSLIHQGIR 420
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 298 bits (763), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 147/311 (47%), Positives = 195/311 (62%), Gaps = 5/311 (1%)
Query: 146 KAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDL 205
K R +P P +ILDAP +++D+YLNLVDWSS NVLAV L N VYLW+A S + +L +
Sbjct: 4 KTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQM 63
Query: 206 GI-DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXXXXXX 264
+ + SV W +LAVGTS +VQ+WD + KR+R M H RV
Sbjct: 64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILS 123
Query: 265 XXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW----NQ 320
R I D+R E V+ LSGH EVCGL+W+ D R LASGGNDN + VW +
Sbjct: 124 SGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGE 183
Query: 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQV 380
P+ + +H AVKA+AW P +LA+GGGT+DR IR WN + LS +D SQV
Sbjct: 184 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV 243
Query: 381 CNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGA 440
C+++WS + EL+S HG++QNQ+++W+YPTM+K+A L GHT RVL L +SPDG T+ + A
Sbjct: 244 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 303
Query: 441 GDETLRFWNVF 451
DETLR W F
Sbjct: 304 ADETLRLWRCF 314
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 9/144 (6%)
Query: 312 DNRLFVWNQHSTQ--PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369
DN +++W+ S +L+ + + ++AW + L GT+ ++ W+
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAV---GTSSAEVQLWDVQQQK 100
Query: 370 HLSCMDTGS-QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLA 428
L M + S +V +L W+ + S G+ + + +ATL+GH+ V L
Sbjct: 101 RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDV---RVAEHHVATLSGHSQEVCGLR 157
Query: 429 ISPDGQTIVTGAGDETLRFWNVFP 452
+PDG+ + +G D + W P
Sbjct: 158 WAPDGRHLASGGNDNLVNVWPSAP 181
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 262 bits (669), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 132/312 (42%), Positives = 184/312 (58%), Gaps = 4/312 (1%)
Query: 144 PVKAP--RKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTK 201
PV P R+ +P ++LDAP + DD+YLNL+DWS+ NV+AV L VY+WNA S V+
Sbjct: 68 PVVTPAKRRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSA 127
Query: 202 LCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXXX 261
L + V SV W++ + L+VG +G V I+D ++RTM GH+ RV
Sbjct: 128 LAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH 187
Query: 262 XXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321
R +I D+R + L GH SEVCGL W D +LASGGNDN + +W+
Sbjct: 188 VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247
Query: 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVC 381
S+ P H AAVKA+AW P LLA+GGGT D+ I FWN T ++ +D GSQV
Sbjct: 248 SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVT 307
Query: 382 NLVWSKNVNELVSTHGYSQNQIIVWRYPT--MSKLATLTGHTFRVLYLAISPDGQTIVTG 439
+L+WS + E++STHG+ N + +W Y + ++K + H RVLY A+SPDG+ + T
Sbjct: 308 SLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTA 367
Query: 440 AGDETLRFWNVF 451
A DE L+FW V+
Sbjct: 368 ASDENLKFWRVY 379
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 122/264 (46%), Gaps = 14/264 (5%)
Query: 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247
V LWN + L G SV V ++ +A + V++W+ + ++T+
Sbjct: 326 TVKLWNRNGQHLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 382
Query: 248 GHR--LRVXXXXXXXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305
GH +R DK++ + Q + L+GH S V G+ +S D++
Sbjct: 383 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVWGVAFSPDDQT 440
Query: 306 LASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
+AS +D + +WN++ Q + H+++V+ +A+SP + ++ + D+ ++ WN
Sbjct: 441 IASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASA---SDDKTVKLWNR 496
Query: 366 TTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVL 425
+ S V + +S + + S S ++ + L TLTGH+ V
Sbjct: 497 NGQLLQTLTGHSSSVRGVAFSPDGQTIASA---SDDKTVKLWNRNGQLLQTLTGHSSSVW 553
Query: 426 YLAISPDGQTIVTGAGDETLRFWN 449
+A SPDGQTI + + D+T++ WN
Sbjct: 554 GVAFSPDGQTIASASSDKTVKLWN 577
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 86/167 (51%), Gaps = 7/167 (4%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
+ L+GH S V G+ +S D + +AS +D + +WN++ Q + H+++V+ +A+S
Sbjct: 49 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFS 107
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402
P + ++ + D+ ++ WN + S V + +S + + S S ++
Sbjct: 108 PDGQTIASA---SDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA---SDDK 161
Query: 403 IIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+ L TLTGH+ V +A SPDGQTI + + D+T++ WN
Sbjct: 162 TVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 119/264 (45%), Gaps = 14/264 (5%)
Query: 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247
V LWN + L G SV V ++ +A + V++W+ + ++T+
Sbjct: 80 TVKLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 136
Query: 248 GHRLRVXXXXXX--XXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305
GH V DK++ + Q + L+GH S V G+ +S D +
Sbjct: 137 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVWGVAFSPDGQT 194
Query: 306 LASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
+AS +D + +WN++ Q + H+++V+ +A+SP + ++ + D+ ++ WN
Sbjct: 195 IASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASA---SDDKTVKLWNR 250
Query: 366 TTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVL 425
+ S V + + + + S S ++ + L TLTGH+ V
Sbjct: 251 NGQLLQTLTGHSSSVNGVAFRPDGQTIASA---SDDKTVKLWNRNGQLLQTLTGHSSSVW 307
Query: 426 YLAISPDGQTIVTGAGDETLRFWN 449
+A SPDGQTI + + D+T++ WN
Sbjct: 308 GVAFSPDGQTIASASDDKTVKLWN 331
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 118/264 (44%), Gaps = 14/264 (5%)
Query: 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247
V LWN + L G SV V ++ +A + V++W+ + ++T+
Sbjct: 203 TVKLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 259
Query: 248 GHRLRVXXXXXX--XXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305
GH V DK++ + Q + L+GH S V G+ +S D +
Sbjct: 260 GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVWGVAFSPDGQT 317
Query: 306 LASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
+AS +D + +WN++ Q + H+++V +A+SP + ++ + D+ ++ WN
Sbjct: 318 IASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASA---SDDKTVKLWNR 373
Query: 366 TTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVL 425
+ S V + +S + + S S ++ + L TLTGH+ V
Sbjct: 374 NGQLLQTLTGHSSSVRGVAFSPDGQTIASA---SDDKTVKLWNRNGQLLQTLTGHSSSVW 430
Query: 426 YLAISPDGQTIVTGAGDETLRFWN 449
+A SPD QTI + + D+T++ WN
Sbjct: 431 GVAFSPDDQTIASASDDKTVKLWN 454
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 7/164 (4%)
Query: 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL 345
+L H S V G+ +S D + +AS +D + +WN++ Q + H+++V +A+SP
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDG 69
Query: 346 HGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIV 405
+ ++ + D+ ++ WN + S V + +S + + S S ++ +
Sbjct: 70 QTIASA---SDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA---SDDKTVK 123
Query: 406 WRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
L TLTGH+ V +A SPDGQTI + + D+T++ WN
Sbjct: 124 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL 345
+L GH + V + S + S D+ L +WN + Q K+ HT V ++A+SP
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 346 HGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVW------SKNVNELVSTHGYS 399
+++ G D +R WN CM T S+ + W S +++ V G
Sbjct: 122 RQIVSGG---RDNALRVWNVKGE----CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGW 174
Query: 400 QNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
N + VW T + L GHT V + +SPDG + D R W++
Sbjct: 175 DNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 73/214 (34%), Gaps = 52/214 (24%)
Query: 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN-QHSTQPVLKYCEHTAAVKAIAWSPH 344
K GH +V + +S DNR++ SGG DN L VWN + L HT V + +SP
Sbjct: 104 KFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPS 163
Query: 345 LHG-LLASGG----------------------------------------GTADRCIRFW 363
L ++ SGG D R W
Sbjct: 164 LDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Query: 364 NTTTNTHLSCMDTGS---QVC---NLVWSKNVNEL-VSTHGYSQNQIIVWRYPTMSKLAT 416
+ T LS M G+ Q+C N W E + IIV P
Sbjct: 224 DLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKK 283
Query: 417 LTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
+ + A S DG T+ +G D +R W V
Sbjct: 284 IVPECVSI---AWSADGSTLYSGYTDNVIRVWGV 314
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 84/196 (42%), Gaps = 11/196 (5%)
Query: 268 RDKSI----LQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323
RDKSI L +D +A +L+GH V + S D + SG D L +W+ +
Sbjct: 403 RDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG 462
Query: 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ---- 379
++ HT V ++A+S ++++ + DR I+ WNT + + G
Sbjct: 463 VSTRRFVGHTKDVLSVAFSLDNRQIVSA---SRDRTIKLWNTLGECKYTISEGGEGHRDW 519
Query: 380 VCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTG 439
V + +S N + + VW +TL GHT V +A+SPDG +G
Sbjct: 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG 579
Query: 440 AGDETLRFWNVFPSPK 455
D + W++ K
Sbjct: 580 GKDGVVLLWDLAEGKK 595
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 95/250 (38%), Gaps = 31/250 (12%)
Query: 226 GTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXX--XXXXXXXRDKSILQRDIRAQEDF 283
G+ G++++WD + R GH V RD++I + + +
Sbjct: 448 GSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY 507
Query: 284 V--SKLSGHKSEVCGLKWSYDNRE--LASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAI 339
GH+ V +++S + + + S D + VWN + + HT V +
Sbjct: 508 TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTV 567
Query: 340 AWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYS 399
A SP L ASGG D + W+ L ++ S + L +S N L + +
Sbjct: 568 AVSPD-GSLCASGG--KDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAA---T 621
Query: 400 QNQIIVWRYPTMSKLATL----------------TGHTFRVLY---LAISPDGQTIVTGA 440
++ I +W + S + L +V+Y L S DG T+ +G
Sbjct: 622 EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGY 681
Query: 441 GDETLRFWNV 450
D +R W +
Sbjct: 682 TDGVIRVWGI 691
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 12/172 (6%)
Query: 283 FVSKLSGHKSEVCGLKW--SYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIA 340
+ GH ++V L S SGG D + VW+ S Q V + H + V ++
Sbjct: 188 LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVR 247
Query: 341 WSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTH---- 396
+ P A G+ D R ++ + ++ S + + +V+ +S
Sbjct: 248 YYPSGD---AFASGSDDATCRLYDLRADREVAIYSKESIIFG---ASSVDFSLSGRLLFA 301
Query: 397 GYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFW 448
GY+ I VW S+++ L GH RV L +SPDG +G+ D TLR W
Sbjct: 302 GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 75/187 (40%), Gaps = 18/187 (9%)
Query: 277 IRAQEDFVSK----LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH 332
+ A FV K L GH ++V + W D R + S D ++ VW+ +T
Sbjct: 46 VEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMP 105
Query: 333 TAAVKAIAWSPHLHGLLASGGGTADRCIRF-------WNTTTNTHLSCMDTGSQVCNLVW 385
V A A++P G + GG ++C + N M T + + +
Sbjct: 106 CTWVMACAYAP--SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHT-NYLSACSF 162
Query: 386 SKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPD--GQTIVTGAGDE 443
+ + ++++ G +W + L + GH VL L ++P G T V+G D+
Sbjct: 163 TNSDMQILTASG--DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDK 220
Query: 444 TLRFWNV 450
W++
Sbjct: 221 KAMVWDM 227
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 106/269 (39%), Gaps = 33/269 (12%)
Query: 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXX--XXXX 263
G DSV + + + LA ++ +++WD + +RTM GH V
Sbjct: 148 GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHI 207
Query: 264 XXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323
RDK+I +++ V +GH+ V ++ + D +AS ND + VW +
Sbjct: 208 VSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 266
Query: 324 QPVLKYCEHTAAVKAIAWSPH--LHGLLASGG---------------GTADRCIRFWNTT 366
+ + EH V+ I+W+P + + G G+ D+ I+ W+ +
Sbjct: 267 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326
Query: 367 TNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY------SQNQIIVWRYPTMSKLATLTGH 420
T L + V + W + V L + G + VW Y + TL H
Sbjct: 327 TGMCLMTL-----VGHDNWVRGV--LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 379
Query: 421 TFRVLYLAISPDGQTIVTGAGDETLRFWN 449
V L +VTG+ D+T++ W
Sbjct: 380 EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 12/168 (7%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
LSGH+S V + + + S D + VW+ + HT +V+ I++ H
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD-HSG 162
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDT----GSQVCNLVWSKNVNELVSTHGYSQNQ 402
LLAS +AD I+ W+ C+ T V ++ N + +VS
Sbjct: 163 KLLASC--SADMTIKLWDFQG---FECIRTMHGHDHNVSSVSIMPNGDHIVS--ASRDKT 215
Query: 403 IIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
I +W T + T TGH V + + DG I + + D+T+R W V
Sbjct: 216 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/189 (18%), Positives = 74/189 (39%), Gaps = 24/189 (12%)
Query: 282 DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAW 341
DF L GH V + + + + LAS D + +W+ + + H V +++
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI 200
Query: 342 SPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQN 401
P+ ++++ + D+ I+ W T + + +V L+++ Q
Sbjct: 201 MPNGDHIVSA---SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 257
Query: 402 QIIVWRYPTMSKLATLTGHTFRVLYLAISPD--------------------GQTIVTGAG 441
+ VW T A L H V ++ +P+ G +++G+
Sbjct: 258 -VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316
Query: 442 DETLRFWNV 450
D+T++ W+V
Sbjct: 317 DKTIKMWDV 325
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 100/246 (40%), Gaps = 23/246 (9%)
Query: 223 LAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQED 282
+ G+S V++WD + + + T+ H V +D+SI D+ + D
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTD 245
Query: 283 FVSK--LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIA 340
+ L GH++ V + +D++ + S D + VWN + + V H + +
Sbjct: 246 ITLRRVLVGHRAAVNVV--DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ 303
Query: 341 WSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400
+ L G++D IR W+ L ++ ++ + N +VS G
Sbjct: 304 YRDRL-----VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN-KRIVS--GAYD 355
Query: 401 NQIIVW--------RYPTMSK-LATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451
+I VW R P + L TL H+ RV L D IV+ + D+T+ W+
Sbjct: 356 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL 413
Query: 452 PSPKSQ 457
P +Q
Sbjct: 414 NDPAAQ 419
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 301 YDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCI 360
YD++++ SG DN + +W++++ + HT +V + + + G++D +
Sbjct: 141 YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV-----IITGSSDSTV 195
Query: 361 RFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLA---TL 417
R W+ T L +T C V N + I VW + + + L
Sbjct: 196 RVWDVNTGEML---NTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL 252
Query: 418 TGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
GH R + D + IV+ +GD T++ WN
Sbjct: 253 VGH--RAAVNVVDFDDKYIVSASGDRTIKVWN 282
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 13/166 (7%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V L+ YD R + +G +D+ + VW+ ++ + + H AV + ++ +
Sbjct: 169 LTGHTGSVLCLQ--YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN---N 223
Query: 347 GLLASGGGTADRCIRFWNTT--TNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQII 404
G++ + + DR I W+ T+ L + G + V + +VS G I
Sbjct: 224 GMMVTC--SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIK 279
Query: 405 VWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
VW T + TL GH + L + +V+G+ D T+R W++
Sbjct: 280 VWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDI 323
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 397 GYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
G N I +W T+ LTGHT VL L D + I+TG+ D T+R W+V
Sbjct: 149 GLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 200
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/158 (18%), Positives = 63/158 (39%), Gaps = 13/158 (8%)
Query: 170 LNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH 229
+N+VD+ +++ + +WN + + + + G + + + R+ + G+S
Sbjct: 259 VNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSD 315
Query: 230 GKVQIWDASRCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQED------- 282
+++WD +R +EGH V D I D+ A D
Sbjct: 316 NTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT 375
Query: 283 -FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319
+ L H V L+ +D ++ S +D+ + +W+
Sbjct: 376 LCLRTLVEHSGRVFRLQ--FDEFQIVSSSHDDTILIWD 411
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L GH +++ + W D+R L S D +L +W+ ++T V ++ V A++P
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-- 108
Query: 347 GLLASGGGTADRC------IRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400
G + GG + C R N + L+ C + + N++V++ G
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL---DDNQIVTSSG--D 163
Query: 401 NQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
+W T + T TGHT V+ L+++PD + V+GA D + + W+V
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 8/163 (4%)
Query: 290 HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLL 349
H +V L + D R SG D +W+ + H + + AI + P+ +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--- 239
Query: 350 ASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLV---WSKNVNELVSTHGYSQNQIIVW 406
A G+ D R ++ + L + +C + +SK+ L++ GY VW
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA--GYDDFNCNVW 297
Query: 407 RYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+ L GH RV L ++ DG + TG+ D L+ WN
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L GH +++ + W D+R L S D +L +W+ ++T V ++ V A++P
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-- 108
Query: 347 GLLASGGGTADRC------IRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400
G + GG + C R N + L+ C + + N++V++ G
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL---DDNQIVTSSG--D 163
Query: 401 NQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
+W T + T TGHT V+ L+++PD + V+GA D + + W+V
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 8/163 (4%)
Query: 290 HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLL 349
H +V L + D R SG D +W+ + H + + AI + P+ +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--- 239
Query: 350 ASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLV---WSKNVNELVSTHGYSQNQIIVW 406
A G+ D R ++ + L + +C + +SK+ L++ GY VW
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA--GYDDFNCNVW 297
Query: 407 RYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+ L GH RV L ++ DG + TG+ D L+ WN
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 15/152 (9%)
Query: 308 SGGNDNRLFVWNQHSTQPV-----LKY--CEHTAAVKAIAWSPHLHGLLASGGGTADRCI 360
S G +N F Q PV LK+ HT AV ++ +SP+ L +S +AD+ I
Sbjct: 8 SSGRENLYFQGTQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASS---SADKLI 64
Query: 361 RFWNTTTNTHLSCMDTGSQ--VCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLT 418
+ W + +G + + ++ WS + N LVS + +W + L TL
Sbjct: 65 KIWGAYDGKFEKTI-SGHKLGISDVAWSSDSNLLVSAS--DDKTLKIWDVSSGKCLKTLK 121
Query: 419 GHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
GH+ V +P IV+G+ DE++R W+V
Sbjct: 122 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 108/273 (39%), Gaps = 24/273 (8%)
Query: 189 VYLWNACSSKVTKLC---DLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 64 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 119
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 120 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 178
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 179 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 235
Query: 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS-----THGYSQNQIIVWRYPTMSKLATL 417
W+ + C+ T + N + N V+ G N + +W T + L
Sbjct: 236 WDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 292
Query: 418 TGHTFRVLYLAISPDGQTIVTGA--GDETLRFW 448
GHT V+ A P I + A D+T++ W
Sbjct: 293 QGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN---ELVSTHGYSQNQI 403
L+++ + D+ ++ W+ ++ C+ T N V+ N N L+ + + ++ +
Sbjct: 96 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-V 148
Query: 404 IVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+W T L TL H+ V + + DG IV+ + D R W+
Sbjct: 149 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 74 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 133
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402
P + +++ G+ D +R W+ T L + S + V L+ + Y
Sbjct: 134 PQSNLIVS---GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DGL 189
Query: 403 IIVWRYPTMSKLATLTGHTF-RVLYLAISPDGQTIVTGAGDETLRFWN 449
+W + L TL V ++ SP+G+ I+ D TL+ W+
Sbjct: 190 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 237
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 105/248 (42%), Gaps = 13/248 (5%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 42 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 101
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 102 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 160
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVW 385
H+ V A+ ++ +++S + D R W+T + L + D V + +
Sbjct: 161 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 217
Query: 386 SKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH---TFRVLYLAISPDGQTIVTGAGD 442
S N +++ N + +W Y L T TGH + + G+ IV+G+ D
Sbjct: 218 SPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 275
Query: 443 ETLRFWNV 450
+ WN+
Sbjct: 276 NLVYIWNL 283
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 409 PTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451
P + TL GHT V + SP+G+ + + + D+ ++ W +
Sbjct: 28 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 70
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L GH +++ + W D+R L S D +L +W+ ++T V ++ V A++P
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-- 119
Query: 347 GLLASGGGTADRC------IRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400
G + GG + C R N + L+ C + + N++V++ G
Sbjct: 120 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL---DDNQIVTSSG--D 174
Query: 401 NQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
+W T + T TGHT V+ L+++PD + V+GA D + + W+V
Sbjct: 175 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 224
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 8/163 (4%)
Query: 290 HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLL 349
H +V L + D R SG D +W+ + H + + AI + P+ +
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--- 250
Query: 350 ASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLV---WSKNVNELVSTHGYSQNQIIVW 406
A G+ D R ++ + L + +C + +SK+ L++ GY VW
Sbjct: 251 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA--GYDDFNCNVW 308
Query: 407 RYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+ L GH RV L ++ DG + TG+ D L+ WN
Sbjct: 309 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L GH +++ + W D+R L S D +L +W+ ++T V ++ V A++P
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-- 108
Query: 347 GLLASGGGTADRC------IRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400
G + GG + C R N + L+ C + + N++V++ G
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL---DDNQIVTSSG--D 163
Query: 401 NQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
+W T + T TGHT V+ L+++PD + V+GA D + + W+V
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 8/163 (4%)
Query: 290 HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLL 349
H +V L + D R SG D +W+ + H + + AI + P+ +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--- 239
Query: 350 ASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLV---WSKNVNELVSTHGYSQNQIIVW 406
A G+ D R ++ + L + +C + +SK+ L++ GY VW
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA--GYDDFNCNVW 297
Query: 407 RYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+ L GH RV L ++ DG + TG+ D L+ WN
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L GH +++ + W D+R L S D +L +W+ ++T V ++ V A++P
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS-- 108
Query: 347 GLLASGGGTADRC------IRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400
G + GG + C R N + L+ C + + N++V++ G
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL---DDNQIVTSSG--D 163
Query: 401 NQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
+W T + T TGHT V+ L+++PD + V+GA D + + W+V
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDV 213
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 8/163 (4%)
Query: 290 HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLL 349
H +V L + D R SG D +W+ + H + + AI + P+ +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--- 239
Query: 350 ASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLV---WSKNVNELVSTHGYSQNQIIVW 406
A G+ D R ++ + L + +C + +SK+ L++ GY VW
Sbjct: 240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA--GYDDFNCNVW 297
Query: 407 RYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+ L GH RV L ++ DG + TG+ D L+ WN
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 108/273 (39%), Gaps = 24/273 (8%)
Query: 189 VYLWNACSSKVTKLC---DLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 69 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 124
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 183
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 184 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 240
Query: 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS-----THGYSQNQIIVWRYPTMSKLATL 417
W+ + C+ T + N + N V+ G N + +W T + L
Sbjct: 241 WDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 297
Query: 418 TGHTFRVLYLAISPDGQTIVTGA--GDETLRFW 448
GHT V+ A P I + A D+T++ W
Sbjct: 298 QGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ--VCNLVWSKNV 389
HT AV ++ +SP+ L +S +AD+ I+ W + +G + + ++ WS +
Sbjct: 44 HTKAVSSVKFSPNGEWLASS---SADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 99
Query: 390 NELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
N LVS + +W + L TL GH+ V +P IV+G+ DE++R W+
Sbjct: 100 NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 450 V 450
V
Sbjct: 158 V 158
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN---ELVSTHGYSQNQI 403
L+++ + D+ ++ W+ ++ C+ T N V+ N N L+ + + ++ +
Sbjct: 101 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-V 153
Query: 404 IVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+W T L TL H+ V + + DG IV+ + D R W+
Sbjct: 154 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 79 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 138
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402
P + +++ G+ D +R W+ T L + S + V L+ + Y
Sbjct: 139 PQSNLIVS---GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DGL 194
Query: 403 IIVWRYPTMSKLATLTGHTF-RVLYLAISPDGQTIVTGAGDETLRFWN 449
+W + L TL V ++ SP+G+ I+ D TL+ W+
Sbjct: 195 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 106/252 (42%), Gaps = 13/252 (5%)
Query: 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXX 263
G +V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 102
Query: 264 XXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323
DK++ D+ + + + L GH + V ++ + + SG D + +W+ +
Sbjct: 103 VSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 161
Query: 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVC 381
+ + H+ V A+ ++ +++S + D R W+T + L + D V
Sbjct: 162 KCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVS 218
Query: 382 NLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH---TFRVLYLAISPDGQTIVT 438
+ +S N +++ N + +W Y L T TGH + + G+ IV+
Sbjct: 219 FVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 276
Query: 439 GAGDETLRFWNV 450
G+ D + WN+
Sbjct: 277 GSEDNLVYIWNL 288
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 409 PTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451
P + TL GHT V + SP+G+ + + + D+ ++ W +
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 75
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 108/273 (39%), Gaps = 24/273 (8%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 53 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 108
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 167
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 224
Query: 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS-----THGYSQNQIIVWRYPTMSKLATL 417
W+ + C+ T + N + N V+ G N + +W T + L
Sbjct: 225 WDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281
Query: 418 TGHTFRVLYLAISPDGQTIVTGA--GDETLRFW 448
GHT V+ A P I + A D+T++ W
Sbjct: 282 QGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ--VCNLVWSKNV 389
HT AV ++ +SP+ L +S +AD+ I+ W + +G + + ++ WS +
Sbjct: 28 HTKAVSSVKFSPNGEWLASS---SADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 83
Query: 390 NELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
N LVS + +W + L TL GH+ V +P IV+G+ DE++R W+
Sbjct: 84 NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 450 V 450
V
Sbjct: 142 V 142
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN---ELVSTHGYSQNQI 403
L+++ + D+ ++ W+ ++ C+ T N V+ N N L+ + + ++ +
Sbjct: 85 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-V 137
Query: 404 IVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+W T L TL H+ V + + DG IV+ + D R W+
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 63 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402
P + +++ G+ D +R W+ T L + S + V L+ + Y
Sbjct: 123 PQSNLIVS---GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DGL 178
Query: 403 IIVWRYPTMSKLATLTGHTF-RVLYLAISPDGQTIVTGAGDETLRFWN 449
+W + L TL V ++ SP+G+ I+ D TL+ W+
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 105/248 (42%), Gaps = 13/248 (5%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 90
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 91 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVW 385
H+ V A+ ++ +++S + D R W+T + L + D V + +
Sbjct: 150 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 386 SKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH---TFRVLYLAISPDGQTIVTGAGD 442
S N +++ N + +W Y L T TGH + + G+ IV+G+ D
Sbjct: 207 SPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Query: 443 ETLRFWNV 450
+ WN+
Sbjct: 265 NLVYIWNL 272
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 409 PTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451
P + TL GHT V + SP+G+ + + + D+ ++ W +
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 59
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 108/273 (39%), Gaps = 24/273 (8%)
Query: 189 VYLWNACSSKVTKLC---DLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 71 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 126
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 127 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 185
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 186 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 242
Query: 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS-----THGYSQNQIIVWRYPTMSKLATL 417
W+ + C+ T + N + N V+ G N + +W T + L
Sbjct: 243 WDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 299
Query: 418 TGHTFRVLYLAISPDGQTIVTGA--GDETLRFW 448
GHT V+ A P I + A D+T++ W
Sbjct: 300 QGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ--VCNLVWSKNV 389
HT AV ++ +SP+ L +S +AD+ I+ W + +G + + ++ WS +
Sbjct: 46 HTKAVSSVKFSPNGEWLASS---SADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 101
Query: 390 NELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
N LVS + +W + L TL GH+ V +P IV+G+ DE++R W+
Sbjct: 102 NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 159
Query: 450 V 450
V
Sbjct: 160 V 160
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN---ELVSTHGYSQNQI 403
L+++ + D+ ++ W+ ++ C+ T N V+ N N L+ + + ++ +
Sbjct: 103 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-V 155
Query: 404 IVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+W T L TL H+ V + + DG IV+ + D R W+
Sbjct: 156 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 81 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 140
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402
P + +++ G+ D +R W+ T L + S + V L+ + Y
Sbjct: 141 PQSNLIVS---GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DGL 196
Query: 403 IIVWRYPTMSKLATLTGHTF-RVLYLAISPDGQTIVTGAGDETLRFWN 449
+W + L TL V ++ SP+G+ I+ D TL+ W+
Sbjct: 197 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 244
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/252 (21%), Positives = 106/252 (42%), Gaps = 13/252 (5%)
Query: 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXX 263
G +V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 104
Query: 264 XXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323
DK++ D+ + + + L GH + V ++ + + SG D + +W+ +
Sbjct: 105 VSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 163
Query: 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVC 381
+ + H+ V A+ ++ +++S + D R W+T + L + D V
Sbjct: 164 KCLKTLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVS 220
Query: 382 NLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH---TFRVLYLAISPDGQTIVT 438
+ +S N +++ N + +W Y L T TGH + + G+ IV+
Sbjct: 221 FVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 278
Query: 439 GAGDETLRFWNV 450
G+ D + WN+
Sbjct: 279 GSEDNLVYIWNL 290
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 409 PTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451
P + TL GHT V + SP+G+ + + + D+ ++ W +
Sbjct: 35 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 77
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 108/273 (39%), Gaps = 24/273 (8%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 53 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 108
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 167
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 224
Query: 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS-----THGYSQNQIIVWRYPTMSKLATL 417
W+ + C+ T + N + N V+ G N + +W T + L
Sbjct: 225 WDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281
Query: 418 TGHTFRVLYLAISPDGQTIVTGA--GDETLRFW 448
GHT V+ A P I + A D+T++ W
Sbjct: 282 QGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ--VCNLVWSKNV 389
HT AV ++ +SP+ L +S +AD+ I+ W + +G + + ++ WS +
Sbjct: 28 HTKAVSSVKFSPNGEWLASS---SADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 83
Query: 390 NELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
N LVS + +W + L TL GH+ V +P IV+G+ DE++R W+
Sbjct: 84 NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 450 V 450
V
Sbjct: 142 V 142
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN---ELVSTHGYSQNQI 403
L+++ + D+ ++ W+ ++ C+ T N V+ N N L+ + + ++ +
Sbjct: 85 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-V 137
Query: 404 IVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+W T L TL H+ V + + DG IV+ + D R W+
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 63 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402
P + +++ G+ D +R W+ T L + S + V L+ + Y
Sbjct: 123 PQSNLIVS---GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DGL 178
Query: 403 IIVWRYPTMSKLATLTGHTF-RVLYLAISPDGQTIVTGAGDETLRFWN 449
+W + L TL V ++ SP+G+ I+ D TL+ W+
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 105/248 (42%), Gaps = 13/248 (5%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 90
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 91 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVW 385
H+ V A+ ++ +++S + D R W+T + L + D V + +
Sbjct: 150 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 386 SKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH---TFRVLYLAISPDGQTIVTGAGD 442
S N +++ N + +W Y L T TGH + + G+ IV+G+ D
Sbjct: 207 SPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Query: 443 ETLRFWNV 450
+ WN+
Sbjct: 265 NLVYIWNL 272
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 409 PTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451
P + TL GHT V + SP+G+ + + + D+ ++ W +
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 59
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 98/247 (39%), Gaps = 18/247 (7%)
Query: 206 GIDDSV--CSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXXXXX 263
G DD V C NR + G+ +++W A K +RT+ GH V
Sbjct: 116 GHDDHVITCLQFCGNR---IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNII 172
Query: 264 XXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323
D+++ + E + L GH S V + + + SG D L VW+ +
Sbjct: 173 ISGSTDRTLKVWNAETGE-CIHTLYGHTSTVRCMH--LHEKRVVSGSRDATLRVWDIETG 229
Query: 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNL 383
Q + H AAV+ + + G D ++ W+ T T C+ T N
Sbjct: 230 QCLHVLMGHVAAVRCVQYDGR-----RVVSGAYDFMVKVWDPETET---CLHTLQGHTNR 281
Query: 384 VWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDE 443
V+S + + G I VW T + + TLTGH + L + +V+G D
Sbjct: 282 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH--QSLTSGMELKDNILVSGNADS 339
Query: 444 TLRFWNV 450
T++ W++
Sbjct: 340 TVKIWDI 346
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 108/273 (39%), Gaps = 24/273 (8%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 46 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 101
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 102 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 160
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 161 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 217
Query: 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS-----THGYSQNQIIVWRYPTMSKLATL 417
W+ + C+ T + N + N V+ G N + +W T + L
Sbjct: 218 WDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 274
Query: 418 TGHTFRVLYLAISPDGQTIVTGA--GDETLRFW 448
GHT V+ A P I + A D+T++ W
Sbjct: 275 QGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ--VCNLVWSKNV 389
HT AV ++ +SP+ L +S +AD+ I+ W + +G + + ++ WS +
Sbjct: 21 HTKAVSSVKFSPNGEWLASS---SADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 76
Query: 390 NELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
N LVS + +W + L TL GH+ V +P IV+G+ DE++R W+
Sbjct: 77 NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134
Query: 450 V 450
V
Sbjct: 135 V 135
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN---ELVSTHGYSQNQI 403
L+++ + D+ ++ W+ ++ C+ T N V+ N N L+ + + ++ +
Sbjct: 78 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-V 130
Query: 404 IVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+W T L TL H+ V + + DG IV+ + D R W+
Sbjct: 131 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 56 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 115
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402
P + +++ G+ D +R W+ T L + S + V L+ + Y
Sbjct: 116 PQSNLIVS---GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DGL 171
Query: 403 IIVWRYPTMSKLATLTGHTF-RVLYLAISPDGQTIVTGAGDETLRFWN 449
+W + L TL V ++ SP+G+ I+ D TL+ W+
Sbjct: 172 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 219
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 105/248 (42%), Gaps = 13/248 (5%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 24 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 83
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 84 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 142
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVW 385
H+ V A+ ++ +++S + D R W+T + L + D V + +
Sbjct: 143 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 199
Query: 386 SKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH---TFRVLYLAISPDGQTIVTGAGD 442
S N +++ N + +W Y L T TGH + + G+ IV+G+ D
Sbjct: 200 SPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 257
Query: 443 ETLRFWNV 450
+ WN+
Sbjct: 258 NLVYIWNL 265
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 409 PTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451
P + TL GHT V + SP+G+ + + + D+ ++ W +
Sbjct: 10 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 52
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 108/273 (39%), Gaps = 24/273 (8%)
Query: 189 VYLWNACSSKVTKLC---DLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 48 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 103
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 104 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 162
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 163 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 219
Query: 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS-----THGYSQNQIIVWRYPTMSKLATL 417
W+ + C+ T + N + N V+ G N + +W T + L
Sbjct: 220 WDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 276
Query: 418 TGHTFRVLYLAISPDGQTIVTGA--GDETLRFW 448
GHT V+ A P I + A D+T++ W
Sbjct: 277 QGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ--VCNLVWSKNV 389
HT AV ++ +SP+ L +S +AD+ I+ W + +G + + ++ WS +
Sbjct: 23 HTKAVSSVKFSPNGEWLASS---SADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 78
Query: 390 NELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
N LVS + +W + L TL GH+ V +P IV+G+ DE++R W+
Sbjct: 79 NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Query: 450 V 450
V
Sbjct: 137 V 137
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN---ELVSTHGYSQNQI 403
L+++ + D+ ++ W+ ++ C+ T N V+ N N L+ + + ++ +
Sbjct: 80 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-V 132
Query: 404 IVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+W T L TL H+ V + + DG IV+ + D R W+
Sbjct: 133 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 178
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 58 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 117
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402
P + +++ G+ D +R W+ T L + S + V L+ + Y
Sbjct: 118 PQSNLIVS---GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DGL 173
Query: 403 IIVWRYPTMSKLATLTGHTF-RVLYLAISPDGQTIVTGAGDETLRFWN 449
+W + L TL V ++ SP+G+ I+ D TL+ W+
Sbjct: 174 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 221
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 105/248 (42%), Gaps = 13/248 (5%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 26 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 85
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 86 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 144
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVW 385
H+ V A+ ++ +++S + D R W+T + L + D V + +
Sbjct: 145 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 201
Query: 386 SKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH---TFRVLYLAISPDGQTIVTGAGD 442
S N +++ N + +W Y L T TGH + + G+ IV+G+ D
Sbjct: 202 SPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 259
Query: 443 ETLRFWNV 450
+ WN+
Sbjct: 260 NLVYIWNL 267
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 409 PTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451
P + TL GHT V + SP+G+ + + + D+ ++ W +
Sbjct: 12 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 54
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 108/273 (39%), Gaps = 24/273 (8%)
Query: 189 VYLWNACSSKVTKLC---DLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 47 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 102
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 161
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 218
Query: 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS-----THGYSQNQIIVWRYPTMSKLATL 417
W+ + C+ T + N + N V+ G N + +W T + L
Sbjct: 219 WDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275
Query: 418 TGHTFRVLYLAISPDGQTIVTGA--GDETLRFW 448
GHT V+ A P I + A D+T++ W
Sbjct: 276 QGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ--VCNLVWSKNV 389
HT AV ++ +SP+ L +S +AD+ I+ W + +G + + ++ WS +
Sbjct: 22 HTKAVSSVKFSPNGEWLASS---SADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 77
Query: 390 NELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
N LVS + +W + L TL GH+ V +P IV+G+ DE++R W+
Sbjct: 78 NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 450 V 450
V
Sbjct: 136 V 136
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN---ELVSTHGYSQNQI 403
L+++ + D+ ++ W+ ++ C+ T N V+ N N L+ + + ++ +
Sbjct: 79 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-V 131
Query: 404 IVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+W T L TL H+ V + + DG IV+ + D R W+
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 116
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402
P + +++ G+ D +R W+ T L + S + V L+ + Y
Sbjct: 117 PQSNLIVS---GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DGL 172
Query: 403 IIVWRYPTMSKLATLTGHTF-RVLYLAISPDGQTIVTGAGDETLRFWN 449
+W + L TL V ++ SP+G+ I+ D TL+ W+
Sbjct: 173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 105/248 (42%), Gaps = 13/248 (5%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 84
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 85 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 143
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVW 385
H+ V A+ ++ +++S + D R W+T + L + D V + +
Sbjct: 144 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
Query: 386 SKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH---TFRVLYLAISPDGQTIVTGAGD 442
S N +++ N + +W Y L T TGH + + G+ IV+G+ D
Sbjct: 201 SPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258
Query: 443 ETLRFWNV 450
+ WN+
Sbjct: 259 NLVYIWNL 266
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 409 PTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451
P + TL GHT V + SP+G+ + + + D+ ++ W +
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 53
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ--VCNLVWSKNV 389
HT AV ++ +SP+ L AS +AD+ I+ W + +G + + ++ WS +
Sbjct: 25 HTKAVSSVKFSPNGEWLAAS---SADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 80
Query: 390 NELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
N LVS + +W + L TL GH+ V +P IV+G+ DE++R W+
Sbjct: 81 NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 450 V 450
V
Sbjct: 139 V 139
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 108/273 (39%), Gaps = 24/273 (8%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 105
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 164
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 221
Query: 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS-----THGYSQNQIIVWRYPTMSKLATL 417
W+ + C+ T + N + N V+ G N + +W T + L
Sbjct: 222 WDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278
Query: 418 TGHTFRVLYLAISPDGQTIVTGA--GDETLRFW 448
GHT V+ A P I + A D+T++ W
Sbjct: 279 QGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 60 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402
P + +++ G+ D +R W+ T L + S + V L+ + Y
Sbjct: 120 PQSNLIVS---GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DGL 175
Query: 403 IIVWRYPTMSKLATLTGHTF-RVLYLAISPDGQTIVTGAGDETLRFWN 449
+W + L TL V ++ SP+G+ I+ D TL+ W+
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LA+ D + +W + + H + +AWS +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN---ELVSTHGYSQNQI 403
L+++ + D+ ++ W+ ++ C+ T N V+ N N L+ + + ++ +
Sbjct: 82 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-V 134
Query: 404 IVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+W T L TL H+ V + + DG IV+ + D R W+
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 105/248 (42%), Gaps = 13/248 (5%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 28 AVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 88 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVW 385
H+ V A+ ++ +++S + D R W+T + L + D V + +
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 386 SKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH---TFRVLYLAISPDGQTIVTGAGD 442
S N +++ N + +W Y L T TGH + + G+ IV+G+ D
Sbjct: 204 SPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 443 ETLRFWNV 450
+ WN+
Sbjct: 262 NLVYIWNL 269
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 409 PTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451
P + TL GHT V + SP+G+ + + D+ ++ W +
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAY 56
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 108/273 (39%), Gaps = 24/273 (8%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 52 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 107
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 108 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 166
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 167 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 223
Query: 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS-----THGYSQNQIIVWRYPTMSKLATL 417
W+ + C+ T + N + N V+ G N + +W T + L
Sbjct: 224 WDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 280
Query: 418 TGHTFRVLYLAISPDGQTIVTGA--GDETLRFW 448
GHT V+ A P I + A D+T++ W
Sbjct: 281 QGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ--VCNLVWSKNV 389
HT AV ++ +SP+ L +S +AD+ I+ W + +G + + ++ WS +
Sbjct: 27 HTKAVSSVKFSPNGEWLASS---SADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 82
Query: 390 NELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
N LVS + +W + L TL GH+ V +P IV+G+ DE++R W+
Sbjct: 83 NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 140
Query: 450 V 450
V
Sbjct: 141 V 141
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN---ELVSTHGYSQNQI 403
L+++ + D+ ++ W+ ++ C+ T N V+ N N L+ + + ++ +
Sbjct: 84 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-V 136
Query: 404 IVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+W T L TL H+ V + + DG IV+ + D R W+
Sbjct: 137 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 182
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 62 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 121
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402
P + +++ G+ D +R W+ T L + S + V L+ + Y
Sbjct: 122 PQSNLIVS---GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DGL 177
Query: 403 IIVWRYPTMSKLATLTGHTF-RVLYLAISPDGQTIVTGAGDETLRFWN 449
+W + L TL V ++ SP+G+ I+ D TL+ W+
Sbjct: 178 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 225
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 105/248 (42%), Gaps = 13/248 (5%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 30 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 89
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 90 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 148
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVW 385
H+ V A+ ++ +++S + D R W+T + L + D V + +
Sbjct: 149 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 205
Query: 386 SKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH---TFRVLYLAISPDGQTIVTGAGD 442
S N +++ N + +W Y L T TGH + + G+ IV+G+ D
Sbjct: 206 SPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 263
Query: 443 ETLRFWNV 450
+ WN+
Sbjct: 264 NLVYIWNL 271
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 409 PTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451
P + TL GHT V + SP+G+ + + + D+ ++ W +
Sbjct: 16 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 58
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 108/273 (39%), Gaps = 24/273 (8%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 53 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 108
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 167
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 168 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 224
Query: 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS-----THGYSQNQIIVWRYPTMSKLATL 417
W+ + C+ T + N + N V+ G N + +W T + L
Sbjct: 225 WDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 281
Query: 418 TGHTFRVLYLAISPDGQTIVTGA--GDETLRFW 448
GHT V+ A P I + A D+T++ W
Sbjct: 282 QGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ--VCNLVWSKNV 389
HT AV ++ +SP+ L +S +AD+ I+ W + +G + + ++ WS +
Sbjct: 28 HTKAVSSVKFSPNGEWLASS---SADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 83
Query: 390 NELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
N LVS + +W + L TL GH+ V +P IV+G+ DE++R W+
Sbjct: 84 NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 450 V 450
V
Sbjct: 142 V 142
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN---ELVSTHGYSQNQI 403
L+++ + D+ ++ W+ ++ C+ T N V+ N N L+ + + ++ +
Sbjct: 85 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-V 137
Query: 404 IVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+W T L TL H+ V + + DG IV+ + D R W+
Sbjct: 138 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 63 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402
P + +++ G+ D +R W+ T L + S + V L+ + Y
Sbjct: 123 PQSNLIVS---GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DGL 178
Query: 403 IIVWRYPTMSKLATLTGHTF-RVLYLAISPDGQTIVTGAGDETLRFWN 449
+W + L TL V ++ SP+G+ I+ D TL+ W+
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 105/248 (42%), Gaps = 13/248 (5%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 90
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 91 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVW 385
H+ V A+ ++ +++S + D R W+T + L + D V + +
Sbjct: 150 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 386 SKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH---TFRVLYLAISPDGQTIVTGAGD 442
S N +++ N + +W Y L T TGH + + G+ IV+G+ D
Sbjct: 207 SPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Query: 443 ETLRFWNV 450
+ WN+
Sbjct: 265 NLVYIWNL 272
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 409 PTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451
P + TL GHT V + SP+G+ + + + D+ ++ W +
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 59
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 108/273 (39%), Gaps = 24/273 (8%)
Query: 189 VYLWNACSSKVTKLC---DLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 47 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 102
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 161
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 162 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 218
Query: 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS-----THGYSQNQIIVWRYPTMSKLATL 417
W+ + C+ T + N + N V+ G N + +W T + L
Sbjct: 219 WDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 275
Query: 418 TGHTFRVLYLAISPDGQTIVTGA--GDETLRFW 448
GHT V+ A P I + A D+T++ W
Sbjct: 276 QGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ--VCNLVWSKNV 389
HT AV ++ +SP+ L +S +AD+ I+ W + +G + + ++ WS +
Sbjct: 22 HTKAVSSVKFSPNGEWLASS---SADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 77
Query: 390 NELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
N LVS + +W + L TL GH+ V +P IV+G+ DE++R W+
Sbjct: 78 NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 450 V 450
V
Sbjct: 136 V 136
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN---ELVSTHGYSQNQI 403
L+++ + D+ ++ W+ ++ C+ T N V+ N N L+ + + ++ +
Sbjct: 79 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-V 131
Query: 404 IVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+W T L TL H+ V + + DG IV+ + D R W+
Sbjct: 132 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 116
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402
P + +++ G+ D +R W+ T L + S + V L+ + Y
Sbjct: 117 PQSNLIVS---GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DGL 172
Query: 403 IIVWRYPTMSKLATLTGHTF-RVLYLAISPDGQTIVTGAGDETLRFWN 449
+W + L TL V ++ SP+G+ I+ D TL+ W+
Sbjct: 173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 105/248 (42%), Gaps = 13/248 (5%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 84
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 85 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 143
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVW 385
H+ V A+ ++ +++S + D R W+T + L + D V + +
Sbjct: 144 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
Query: 386 SKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH---TFRVLYLAISPDGQTIVTGAGD 442
S N +++ N + +W Y L T TGH + + G+ IV+G+ D
Sbjct: 201 SPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258
Query: 443 ETLRFWNV 450
+ WN+
Sbjct: 259 NLVYIWNL 266
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 409 PTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451
P + TL GHT V + SP+G+ + + + D+ ++ W +
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 53
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 108/273 (39%), Gaps = 24/273 (8%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 43 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 98
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 99 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 157
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 158 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 214
Query: 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS-----THGYSQNQIIVWRYPTMSKLATL 417
W+ + C+ T + N + N V+ G N + +W T + L
Sbjct: 215 WDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 271
Query: 418 TGHTFRVLYLAISPDGQTIVTGA--GDETLRFW 448
GHT V+ A P I + A D+T++ W
Sbjct: 272 QGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ--VCNLVWSKNV 389
HT AV ++ +SP+ L +S +AD+ I+ W + +G + + ++ WS +
Sbjct: 18 HTKAVSSVKFSPNGEWLASS---SADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 73
Query: 390 NELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
N LVS + +W + L TL GH+ V +P IV+G+ DE++R W+
Sbjct: 74 NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
Query: 450 V 450
V
Sbjct: 132 V 132
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN---ELVSTHGYSQNQI 403
L+++ + D+ ++ W+ ++ C+ T N V+ N N L+ + + ++ +
Sbjct: 75 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-V 127
Query: 404 IVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+W T L TL H+ V + + DG IV+ + D R W+
Sbjct: 128 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 173
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 53 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 112
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402
P + +++ G+ D +R W+ T L + S + V L+ + Y
Sbjct: 113 PQSNLIVS---GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DGL 168
Query: 403 IIVWRYPTMSKLATLTGHTF-RVLYLAISPDGQTIVTGAGDETLRFWN 449
+W + L TL V ++ SP+G+ I+ D TL+ W+
Sbjct: 169 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 216
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 105/248 (42%), Gaps = 13/248 (5%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 80
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 81 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 139
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVW 385
H+ V A+ ++ +++S + D R W+T + L + D V + +
Sbjct: 140 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 196
Query: 386 SKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH---TFRVLYLAISPDGQTIVTGAGD 442
S N +++ N + +W Y L T TGH + + G+ IV+G+ D
Sbjct: 197 SPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 254
Query: 443 ETLRFWNV 450
+ WN+
Sbjct: 255 NLVYIWNL 262
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 409 PTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451
P + TL GHT V + SP+G+ + + + D+ ++ W +
Sbjct: 7 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 49
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 107/273 (39%), Gaps = 24/273 (8%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 105
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + L H V + ++ D
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGM-CLKTLPAHSDPVSAVHFNRDG 164
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 221
Query: 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS-----THGYSQNQIIVWRYPTMSKLATL 417
W+ + C+ T + N + N V+ G N + +W T + L
Sbjct: 222 WDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKL 278
Query: 418 TGHTFRVLYLAISPDGQTIVTGA--GDETLRFW 448
GHT V+ A P I + A D+T++ W
Sbjct: 279 QGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ--VCNLVWSKNV 389
HT AV ++ +SP+ L +S +AD+ I+ W + +G + + ++ WS +
Sbjct: 25 HTKAVSSVKFSPNGEWLASS---SADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 80
Query: 390 NELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
N LVS + +W + L TL GH+ V +P IV+G+ DE++R W+
Sbjct: 81 NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 450 V 450
V
Sbjct: 139 V 139
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 60 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402
P + +++ G+ D +R W+ T L + S + V L+ + Y
Sbjct: 120 PQSNLIVS---GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DGL 175
Query: 403 IIVWRYPTMSKLATLTGHTF-RVLYLAISPDGQTIVTGAGDETLRFWN 449
+W + L TL V ++ SP+G+ I+ D TL+ W+
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN---ELVSTHGYSQNQI 403
L+++ + D+ ++ W+ ++ C+ T N V+ N N L+ + + ++ +
Sbjct: 82 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-V 134
Query: 404 IVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+W T L TL H+ V + + DG IV+ + D R W+
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 104/248 (41%), Gaps = 13/248 (5%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + +
Sbjct: 88 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK 146
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVW 385
H+ V A+ ++ +++S + D R W+T + L + D V + +
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 386 SKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH---TFRVLYLAISPDGQTIVTGAGD 442
S N +++ N + +W Y L T TGH + + G+ IV+G+ D
Sbjct: 204 SPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 443 ETLRFWNV 450
+ WN+
Sbjct: 262 NMVYIWNL 269
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 218 NRNTHLAVGTSH-GKVQIWDASRCKRVRTM---EGHRLRVXXXXXXXXXXXXXXRDKSIL 273
NR+ L V +S+ G +IWD + + ++T+ + + D ++
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Query: 274 QRDIRAQEDFVSKLSGHKSE---------VCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324
D ++ + +GHK+E V G KW + SG DN +++WN + +
Sbjct: 221 LWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNMVYIWNLQTKE 273
Query: 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
V K HT V + A P ++AS D+ I+ W +
Sbjct: 274 IVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKS 313
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 409 PTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451
P + + TL GHT V + SP+G+ + + + D+ ++ W +
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 56
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 13/171 (7%)
Query: 289 GHKSEVCGLKWSYDNRELASGGNDNRLFVW--NQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
GH+ V + WS LAS D +W NQ + V H VK++AW+P
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS-G 117
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDT----GSQVCNLVWSKNVNELVSTHGYSQNQ 402
LLA+ + D+ + W C+ V ++VW + EL+++ Y +
Sbjct: 118 NLLATC--SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS-QELLASASY-DDT 173
Query: 403 IIVWRYPTMSKL--ATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451
+ ++R + ATL GH V LA P GQ + + + D T+R W +
Sbjct: 174 VKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 69/188 (36%), Gaps = 29/188 (15%)
Query: 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIW-----DASRCKRVRTMEGHRLRVXXXXXXX 260
G ++ V SV WA LA + V +W D C V ++
Sbjct: 103 GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ 162
Query: 261 XXXXXXXRDKSILQRDIRAQED---FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV 317
D ++ + R +ED + L GH+S V L + + LAS +D + +
Sbjct: 163 ELLASASYDDTV--KLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRI 220
Query: 318 WNQH-----------STQPVLK-YCE----HTAAVKAIAWSPHLHGLLASGGGTADRCIR 361
W Q+ + P K C H+ + IAW L G LA+ G D IR
Sbjct: 221 WRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC-QLTGALATACG--DDAIR 277
Query: 362 FWNTTTNT 369
+ N+
Sbjct: 278 VFQEDPNS 285
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 16/197 (8%)
Query: 286 KLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLK-------YCEHTAAVK 337
+L GH+ E GL W+ + N L S +D+ + +W+ ++T + + HTA V+
Sbjct: 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 235
Query: 338 AIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS---CMDTGSQVCNLVWSKNVNELVS 394
+AW HL G D+ + W+T N +D + N + +E +
Sbjct: 236 DVAW--HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 293
Query: 395 THGYSQNQIIVWRYPTMS-KLATLTGHTFRVLYLAISPDGQTIVTGAG-DETLRFWNVFP 452
G + + +W + KL + H + + SP +TI+ +G D L W++
Sbjct: 294 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353
Query: 453 SPKSQNT-DSEIGASSL 468
+ Q+T D+E G L
Sbjct: 354 IGEEQSTEDAEDGPPEL 370
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 269 DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE-LASGGNDNRLFVWN------QH 321
DK++ D+R + + HK E+ ++WS N LAS G D RL VW+ +
Sbjct: 299 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 358
Query: 322 STQ------PVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370
ST+ P L + HTA + +W+P+ ++ S + D ++ W N +
Sbjct: 359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS--VSEDNIMQVWQMAENVY 413
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 11/137 (8%)
Query: 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH----LSCMDTG-- 377
QP L+ H ++W+P+L+G L S C+ N T H + TG
Sbjct: 172 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 231
Query: 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVW--RYPTMSKLA-TLTGHTFRVLYLAISPDGQ 434
+ V ++ W L + Q ++++W R SK + T+ HT V L+ +P +
Sbjct: 232 AVVEDVAWHLLHESLFGSVADDQ-KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 290
Query: 435 TIV-TGAGDETLRFWNV 450
I+ TG+ D+T+ W++
Sbjct: 291 FILATGSADKTVALWDL 307
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 16/197 (8%)
Query: 286 KLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLK-------YCEHTAAVK 337
+L GH+ E GL W+ + N L S +D+ + +W+ ++T + + HTA V+
Sbjct: 178 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 237
Query: 338 AIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS---CMDTGSQVCNLVWSKNVNELVS 394
+AW HL G D+ + W+T N +D + N + +E +
Sbjct: 238 DVAW--HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 295
Query: 395 THGYSQNQIIVWRYPTMS-KLATLTGHTFRVLYLAISPDGQTIVTGAG-DETLRFWNVFP 452
G + + +W + KL + H + + SP +TI+ +G D L W++
Sbjct: 296 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 355
Query: 453 SPKSQNT-DSEIGASSL 468
+ Q+T D+E G L
Sbjct: 356 IGEEQSTEDAEDGPPEL 372
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 269 DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE-LASGGNDNRLFVWN------QH 321
DK++ D+R + + HK E+ ++WS N LAS G D RL VW+ +
Sbjct: 301 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 360
Query: 322 STQ------PVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370
ST+ P L + HTA + +W+P+ ++ S + D ++ W N +
Sbjct: 361 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS--VSEDNIMQVWQMAENVY 415
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 11/137 (8%)
Query: 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH----LSCMDTG-- 377
QP L+ H ++W+P+L+G L S C+ N T H + TG
Sbjct: 174 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 233
Query: 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVW--RYPTMSKLA-TLTGHTFRVLYLAISPDGQ 434
+ V ++ W L + Q ++++W R SK + T+ HT V L+ +P +
Sbjct: 234 AVVEDVAWHLLHESLFGSVADDQ-KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 292
Query: 435 TIV-TGAGDETLRFWNV 450
I+ TG+ D+T+ W++
Sbjct: 293 FILATGSADKTVALWDL 309
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 16/197 (8%)
Query: 286 KLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLK-------YCEHTAAVK 337
+L GH+ E GL W+ + N L S +D+ + +W+ ++T + + HTA V+
Sbjct: 180 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 239
Query: 338 AIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS---CMDTGSQVCNLVWSKNVNELVS 394
+AW HL G D+ + W+T N +D + N + +E +
Sbjct: 240 DVAW--HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 297
Query: 395 THGYSQNQIIVWRYPTMS-KLATLTGHTFRVLYLAISPDGQTIVTGAG-DETLRFWNVFP 452
G + + +W + KL + H + + SP +TI+ +G D L W++
Sbjct: 298 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 357
Query: 453 SPKSQNT-DSEIGASSL 468
+ Q+T D+E G L
Sbjct: 358 IGEEQSTEDAEDGPPEL 374
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 269 DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE-LASGGNDNRLFVWN------QH 321
DK++ D+R + + HK E+ ++WS N LAS G D RL VW+ +
Sbjct: 303 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 362
Query: 322 STQ------PVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370
ST+ P L + HTA + +W+P+ ++ S + D ++ W N +
Sbjct: 363 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS--VSEDNIMQVWQMAENVY 417
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 11/137 (8%)
Query: 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH----LSCMDTG-- 377
QP L+ H ++W+P+L+G L S C+ N T H + TG
Sbjct: 176 QPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 235
Query: 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVW--RYPTMSKLA-TLTGHTFRVLYLAISPDGQ 434
+ V ++ W L + Q ++++W R SK + T+ HT V L+ +P +
Sbjct: 236 AVVEDVAWHLLHESLFGSVADDQ-KLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 294
Query: 435 TIV-TGAGDETLRFWNV 450
I+ TG+ D+T+ W++
Sbjct: 295 FILATGSADKTVALWDL 311
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ--VCNLVWSKNV 389
HT AV ++ +SP+ L +S +AD+ I+ W + +G + + ++ WS +
Sbjct: 25 HTKAVSSVKFSPNGEWLASS---SADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 80
Query: 390 NELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
N LVS + +W + L TL GH+ V +P IV+G+ DE++R W+
Sbjct: 81 NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 450 V 450
V
Sbjct: 139 V 139
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN---ELVSTHGYSQNQI 403
L+++ + D+ ++ W+ ++ C+ T N V+ N N L+ + + ++ +
Sbjct: 82 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-V 134
Query: 404 IVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+W T L TL H+ V + + DG IV+ + D R W+
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 60 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402
P + +++ G+ D +R W+ T L + S + V L+ + Y
Sbjct: 120 PQSNLIVS---GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DGL 175
Query: 403 IIVWRYPTMSKLATLTGHTF-RVLYLAISPDGQTIVTGAGDETLRFWN 449
+W + L TL V ++ SP+G+ I+ D TL+ W+
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 108/273 (39%), Gaps = 24/273 (8%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 105
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 164
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 221
Query: 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS-----THGYSQNQIIVWRYPTMSKLATL 417
W+ + C+ T + N + N V+ G N + +W T + L
Sbjct: 222 WDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278
Query: 418 TGHTFRVLYLAISPDGQTIVTGA--GDETLRFW 448
GHT V+ A P I + A D+T++ +
Sbjct: 279 QGHTDVVISTACHPTENIIASAALENDKTIKLF 311
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 105/248 (42%), Gaps = 13/248 (5%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 88 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVW 385
H+ V A+ ++ +++S + D R W+T + L + D V + +
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 386 SKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH---TFRVLYLAISPDGQTIVTGAGD 442
S N +++ N + +W Y L T TGH + + G+ IV+G+ D
Sbjct: 204 SPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 443 ETLRFWNV 450
+ WN+
Sbjct: 262 NLVYIWNL 269
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 409 PTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451
P + TL GHT V + SP+G+ + + + D+ ++ W +
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 56
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ--VCNLVWSKNV 389
HT AV ++ +SP+ L +S +AD+ I+ W + +G + + ++ WS +
Sbjct: 25 HTKAVSSVKFSPNGEWLASS---SADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 80
Query: 390 NELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
N LVS + +W + L TL GH+ V +P IV+G+ DE++R W+
Sbjct: 81 NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 450 V 450
V
Sbjct: 139 V 139
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN---ELVSTHGYSQNQI 403
L+++ + D+ ++ W+ ++ C+ T N V+ N N L+ + + ++ +
Sbjct: 82 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-V 134
Query: 404 IVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+W T L TL H+ V + + DG IV+ + D R W+
Sbjct: 135 RIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 5/168 (2%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 60 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402
P + +++ G+ D +R W+ T L + S + V L+ + Y
Sbjct: 120 PQSNLIVS---GSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DGL 175
Query: 403 IIVWRYPTMSKLATLTGHTF-RVLYLAISPDGQTIVTGAGDETLRFWN 449
+W + L TL V ++ SP+G+ I+ D TL+ W+
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 108/273 (39%), Gaps = 24/273 (8%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 105
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + + L H V + ++ D
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDG 164
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNTLKL 221
Query: 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS-----THGYSQNQIIVWRYPTMSKLATL 417
W+ + C+ T + N + N V+ G N + +W T + L
Sbjct: 222 WDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL 278
Query: 418 TGHTFRVLYLAISPDGQTIVTGA--GDETLRFW 448
GHT V+ A P I + A D+T++ +
Sbjct: 279 QGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 105/248 (42%), Gaps = 13/248 (5%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + + +
Sbjct: 88 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVW 385
H+ V A+ ++ +++S + D R W+T + L + D V + +
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 386 SKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH---TFRVLYLAISPDGQTIVTGAGD 442
S N +++ N + +W Y L T TGH + + G+ IV+G+ D
Sbjct: 204 SPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 443 ETLRFWNV 450
+ WN+
Sbjct: 262 NLVYIWNL 269
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 409 PTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451
P + TL GHT V + SP+G+ + + + D+ ++ W +
Sbjct: 14 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 56
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 107/273 (39%), Gaps = 24/273 (8%)
Query: 189 VYLWNACSSKVTKLCD---LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245
+ +W A K K LGI D V W++ + L + ++IWD S K ++T
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISD----VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 105
Query: 246 MEGHRLRVXXXXX--XXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN 303
++GH V D+S+ D++ + L H V + ++ D
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGM-CLKTLPAHSDPVSAVHFNRDG 164
Query: 304 RELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D +W+ S Q + + V + +SP+ +LA+ T D ++
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA---TLDNDLKL 221
Query: 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS-----THGYSQNQIIVWRYPTMSKLATL 417
W+ + C+ T + N + N V+ G N + +W T + L
Sbjct: 222 WDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKL 278
Query: 418 TGHTFRVLYLAISPDGQTIVTGA--GDETLRFW 448
GHT V+ A P I + A D+T++ W
Sbjct: 279 QGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ--VCNLVWSKNV 389
HT AV ++ +SP+ L +S +AD+ I+ W + +G + + ++ WS +
Sbjct: 25 HTKAVSSVKFSPNGEWLASS---SADKLIKIWGAYDGKFEKTI-SGHKLGISDVAWSSDS 80
Query: 390 NELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
N LVS + +W + L TL GH+ V +P IV+G+ DE++R W+
Sbjct: 81 NLLVSAS--DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 450 V 450
V
Sbjct: 139 V 139
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L+GH V +K+S + LAS D + +W + + H + +AWS +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN---ELVSTHGYSQNQI 403
L+++ + D+ ++ W+ ++ C+ T N V+ N N L+ + + ++ +
Sbjct: 82 LLVSA---SDDKTLKIWDVSSG---KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-V 134
Query: 404 IVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
+W T L TL H+ V + + DG IV+ + D R W+
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 5/168 (2%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWS 342
F +SGHK + + WS D+ L S +D L +W+ S + + H+ V ++
Sbjct: 60 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402
P + +++ G+ D +R W+ T L + S + V L+ + Y
Sbjct: 120 PQSNLIVS---GSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-DGL 175
Query: 403 IIVWRYPTMSKLATLTGHTF-RVLYLAISPDGQTIVTGAGDETLRFWN 449
+W + L TL V ++ SP+G+ I+ D L+ W+
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 104/248 (41%), Gaps = 13/248 (5%)
Query: 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXX--XXXXXXXXXX 267
+V SV ++ LA ++ ++IW A K +T+ GH+L +
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 87
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
DK++ D+ + + + L GH + V ++ + + SG D + +W+ + +
Sbjct: 88 DDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK 146
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVW 385
H+ V A+ ++ +++S + D R W+T + L + D V + +
Sbjct: 147 TLPAHSDPVSAVHFNRDGSLIVSS---SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 386 SKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH---TFRVLYLAISPDGQTIVTGAGD 442
S N +++ N + +W Y L T TGH + + G+ IV+G+ D
Sbjct: 204 SPNGKYILA--ATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 443 ETLRFWNV 450
+ WN+
Sbjct: 262 NMVYIWNL 269
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 21/161 (13%)
Query: 218 NRNTHLAVGTSH-GKVQIWDASRCKRVRTM---EGHRLRVXXXXXXXXXXXXXXRDKSIL 273
NR+ L V +S+ G +IWD + + ++T+ + + D +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLK 220
Query: 274 QRDIRAQEDFVSKLSGHKSE---------VCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324
D ++ + +GHK+E V G KW + SG DN +++WN + +
Sbjct: 221 LWD-YSKGKCLKTYTGHKNEKYCIFANFSVTGGKW------IVSGSEDNMVYIWNLQTKE 273
Query: 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365
V K HT V + A P ++AS D+ I+ W +
Sbjct: 274 IVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKS 313
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 409 PTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451
P + + TL GHT V + SP+G+ + + + D+ ++ W +
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 56
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 11/159 (6%)
Query: 299 WSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR 358
+S D + LA+G D + +W+ + + V+ H + ++ + P L++ G+ DR
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS---GSGDR 187
Query: 359 CIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATL- 417
+R W+ T + V + S + ++ G + VW T + L
Sbjct: 188 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA-GSLDRAVRVWDSETGFLVERLD 246
Query: 418 ------TGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
TGH V + + DGQ++V+G+ D +++ WN+
Sbjct: 247 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 26/202 (12%)
Query: 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327
D+ I DI ++ V L GH+ ++ L + +L SG D + +W+ + Q L
Sbjct: 143 EDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL 201
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ-------- 379
V +A SP +A+G + DR +R W++ T + +D+ ++
Sbjct: 202 TLSIEDG-VTTVAVSPGDGKYIAAG--SLDRAVRVWDSETGFLVERLDSENESGTGHKDS 258
Query: 380 VCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLA------------TLTGHTFRVLYL 427
V ++V++++ +VS G + +W + + T GH VL +
Sbjct: 259 VYSVVFTRDGQSVVS--GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 316
Query: 428 AISPDGQTIVTGAGDETLRFWN 449
A + + + I++G+ D + FW+
Sbjct: 317 ATTQNDEYILSGSKDRGVLFWD 338
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/262 (19%), Positives = 100/262 (38%), Gaps = 30/262 (11%)
Query: 213 SVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXX--XXXXXXXXXRDK 270
SV ++ LA G ++IWD K V ++GH + D+
Sbjct: 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 271 SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKY- 329
++ D+R + ++ LS D + +A+G D + VW+ + V +
Sbjct: 188 TVRIWDLRTGQCSLT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 246
Query: 330 ------CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-GSQVCN 382
H +V ++ ++ +++ G+ DR ++ WN + S T S C
Sbjct: 247 SENESGTGHKDSVYSVVFTRDGQSVVS---GSLDRSVKLWNLQNANNKSDSKTPNSGTCE 303
Query: 383 LVWSKNVNELVST----------HGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAIS-- 430
+ + + + ++S G ++ W + + L L GH V+ +A++
Sbjct: 304 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 363
Query: 431 ----PDGQTIVTGAGDETLRFW 448
P+ TG+GD R W
Sbjct: 364 SSLGPEYNVFATGSGDCKARIW 385
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 27/193 (13%)
Query: 290 HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAA-------------- 335
H S VC +K+S D LA+G N V+ V + + +AA
Sbjct: 63 HTSVVCCVKFSNDGEYLATGCNKTTQ-VYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 336 ----VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ-VCNLVWSKNVN 390
++++ +SP LA+G DR IR W+ + + Q + +L + + +
Sbjct: 122 SDLYIRSVCFSPD-GKFLATGA--EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD 178
Query: 391 ELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISP-DGQTIVTGAGDETLRFWN 449
+LVS G + +W T TL+ V +A+SP DG+ I G+ D +R W+
Sbjct: 179 KLVSGSG--DRTVRIWDLRTGQCSLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWD 235
Query: 450 VFPSPKSQNTDSE 462
+ DSE
Sbjct: 236 SETGFLVERLDSE 248
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 30/229 (13%)
Query: 167 DFYLNLVDWS-SHNVLAVGLGN-CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLA 224
D Y+ V +S LA G + + +W+ + K+ + G + + S+ + L
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLV 181
Query: 225 VGTSHGKVQIWD--ASRCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQED 282
G+ V+IWD +C ++E V D+++ D ++
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD--SETG 239
Query: 283 F-VSKL-------SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH-------STQPVL 327
F V +L +GHK V + ++ D + + SG D + +WN S P
Sbjct: 240 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 299
Query: 328 KYCE-----HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL 371
CE H V ++A + + +L+ G+ DR + FW+ + L
Sbjct: 300 GTCEVTYIGHKDFVLSVATTQNDEYILS---GSKDRGVLFWDKKSGNPL 345
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 4/153 (2%)
Query: 299 WSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR 358
+S D + +AS G D L V+ + + +L H V A+S +A+ +AD+
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD-DSYIATC--SADK 686
Query: 359 CIRFWNTTTNTHLSCMDTGSQVCNLV-WSKNVNELVSTHGYSQNQIIVWRYPTMSKLATL 417
++ W++ T + D S+ N ++ N L+ G + + +W T+
Sbjct: 687 KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM 746
Query: 418 TGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
GHT V + SPD + + + + D TLR W+V
Sbjct: 747 FGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 116/270 (42%), Gaps = 29/270 (10%)
Query: 201 KLCDLGI-DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXX 259
KL D+ +D V +++ ++++A ++ KV+IWD++ K V T + H +V
Sbjct: 656 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT 715
Query: 260 XXXXXXXXRDKS---ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316
S L+ Q++ + + GH + V ++S D+ LAS D L
Sbjct: 716 NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 775
Query: 317 VW-----NQHSTQPVLKYC--------EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363
+W N+ + V ++ + VK +WS ++ + A + +
Sbjct: 776 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA----AKNKVLLF 831
Query: 364 NTTTNTHLSCMDTGS----QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTG 419
+ T+ L+ + TG Q C+ + + ++ SQ + +W + K+A G
Sbjct: 832 DIHTSGLLAEIHTGHHSTIQYCDF----SPYDHLAVIALSQYCVELWNIDSRLKVADCRG 887
Query: 420 HTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
H V + SPDG + +T + D+T+R W
Sbjct: 888 HLSWVHGVMFSPDGSSFLTASDDQTIRVWE 917
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 65/165 (39%), Gaps = 12/165 (7%)
Query: 289 GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGL 348
GHK V ++++ D + L S D+ + VWN + V H VK L
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQA-HQETVKDFRLLQDSRLL 1066
Query: 349 LASGGGTADRCIRFWNTTT---NTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIV 405
S GT ++ WN T +C C + S + + ST +I
Sbjct: 1067 SWSFDGT----VKVWNVITGRIERDFTCHQGTVLSCAI--SSDATKFSSTSADKTAKI-- 1118
Query: 406 WRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
W + +S L L GH V A S DG + TG + +R WNV
Sbjct: 1119 WSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1163
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN------QHSTQPV---LKYCEHTAAV 336
+L GH V +S D LA+G ++ + +WN HS P+ H V
Sbjct: 1129 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1188
Query: 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367
+ +SP L+++GG +++WN T
Sbjct: 1189 TDVCFSPDSKTLVSAGGY-----LKWWNVAT 1214
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 397 GYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
G I + P ++ GH V ++ + DG+T+++ + D ++ WN
Sbjct: 986 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1038
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 4/153 (2%)
Query: 299 WSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR 358
+S D + +AS G D L V+ + + +L H V A+S +A+ +AD+
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD-DSYIATC--SADK 679
Query: 359 CIRFWNTTTNTHLSCMDTGSQVCNLV-WSKNVNELVSTHGYSQNQIIVWRYPTMSKLATL 417
++ W++ T + D S+ N ++ N L+ G + + +W T+
Sbjct: 680 KVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM 739
Query: 418 TGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
GHT V + SPD + + + + D TLR W+V
Sbjct: 740 FGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 116/270 (42%), Gaps = 29/270 (10%)
Query: 201 KLCDLGI-DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXX 259
KL D+ +D V +++ ++++A ++ KV+IWD++ K V T + H +V
Sbjct: 649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT 708
Query: 260 XXXXXXXXRDKS---ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316
S L+ Q++ + + GH + V ++S D+ LAS D L
Sbjct: 709 NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 768
Query: 317 VW-----NQHSTQPVLKYC--------EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363
+W N+ + V ++ + VK +WS ++ + A + +
Sbjct: 769 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA----AKNKVLLF 824
Query: 364 NTTTNTHLSCMDTGS----QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTG 419
+ T+ L+ + TG Q C+ + + ++ SQ + +W + K+A G
Sbjct: 825 DIHTSGLLAEIHTGHHSTIQYCDF----SPYDHLAVIALSQYCVELWNIDSRLKVADCRG 880
Query: 420 HTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
H V + SPDG + +T + D+T+R W
Sbjct: 881 HLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 65/165 (39%), Gaps = 12/165 (7%)
Query: 289 GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGL 348
GHK V ++++ D + L S D+ + VWN + V H VK L
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQA-HQETVKDFRLLQDSRLL 1059
Query: 349 LASGGGTADRCIRFWNTTT---NTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIV 405
S GT ++ WN T +C C + S + + ST +I
Sbjct: 1060 SWSFDGT----VKVWNVITGRIERDFTCHQGTVLSCAI--SSDATKFSSTSADKTAKI-- 1111
Query: 406 WRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
W + +S L L GH V A S DG + TG + +R WNV
Sbjct: 1112 WSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNV 1156
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN------QHSTQPV---LKYCEHTAAV 336
+L GH V +S D LA+G ++ + +WN HS P+ H V
Sbjct: 1122 ELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1181
Query: 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367
+ +SP L+++GG +++WN T
Sbjct: 1182 TDVCFSPDSKTLVSAGGY-----LKWWNVAT 1207
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 397 GYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
G I + P ++ GH V ++ + DG+T+++ + D ++ WN
Sbjct: 979 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 21/201 (10%)
Query: 268 RDKSILQRDIRAQEDFV------SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321
RDK+++ + +E L+GH V L S +N S D L +W+
Sbjct: 47 RDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLR 106
Query: 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ-- 379
+ ++ H + V ++A+SP +L++G A+R I+ WN S + +
Sbjct: 107 TGTTYKRFVGHQSEVYSVAFSPDNRQILSAG---AEREIKLWNILGECKFSSAEKENHSD 163
Query: 380 -VCNLVWS---KNVNELVSTHGYSQN-----QIIVWRYPTMSKLATLTGHTFRVLYLAIS 430
V + +S K+ N++ Y + ++ VW + T H V +L+IS
Sbjct: 164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRY-TFKAHESNVNHLSIS 222
Query: 431 PDGQTIVTGAGDETLRFWNVF 451
P+G+ I TG D+ L W++
Sbjct: 223 PNGKYIATGGKDKKLLIWDIL 243
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 405 VWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSE 462
+W T + GH V +A SPD + I++ + ++ WN+ K + + E
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKE 159
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 20/199 (10%)
Query: 286 KLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLK-------YCEHTAAVK 337
+L GH+ E GL W+ + + L S +D+ + +W+ ++ K + H+A V+
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 338 AIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-----HLSCMDTGSQVCNLVWSKNVNEL 392
+AW HL G D+ + W+T +NT HL +D + N + +E
Sbjct: 234 DVAW--HLLHESLFGSVADDQKLXIWDTRSNTTSKPSHL--VDAHTAEVNCLSFNPYSEF 289
Query: 393 VSTHGYSQNQIIVWRYPTMS-KLATLTGHTFRVLYLAISPDGQTIVTGAG-DETLRFWNV 450
+ G + + +W + KL T H + + SP +TI+ +G D L W++
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 451 FPSPKSQNT-DSEIGASSL 468
+ Q+ D+E G L
Sbjct: 350 SKIGEEQSAEDAEDGPPEL 368
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 269 DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE-LASGGNDNRLFVWNQHSTQPVL 327
DK++ D+R + + HK E+ + WS N LAS G D RL VW+ +
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD------LS 350
Query: 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364
K E +A A P L L GG TA WN
Sbjct: 351 KIGEEQSAEDAEDGPPEL--LFIHGGHTAKISDFSWN 385
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 20/199 (10%)
Query: 286 KLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLK-------YCEHTAAVK 337
+L GH+ E GL W+ + + L S +D+ + +W+ ++ K + H+A V+
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 338 AIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-----HLSCMDTGSQVCNLVWSKNVNEL 392
+AW HL G D+ + W+T +NT HL +D + N + +E
Sbjct: 234 DVAW--HLLHESLFGSVADDQKLMIWDTRSNTTSKPSHL--VDAHTAEVNCLSFNPYSEF 289
Query: 393 VSTHGYSQNQIIVWRYPTMS-KLATLTGHTFRVLYLAISPDGQTIVTGAG-DETLRFWNV 450
+ G + + +W + KL T H + + SP +TI+ +G D L W++
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Query: 451 FPSPKSQNT-DSEIGASSL 468
+ Q+ D+E G L
Sbjct: 350 SKIGEEQSAEDAEDGPPEL 368
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 269 DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE-LASGGNDNRLFVWN------QH 321
DK++ D+R + + HK E+ + WS N LAS G D RL VW+ +
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQ 356
Query: 322 STQ------PVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370
S + P L + HTA + +W+P+ ++ S + D ++ W N +
Sbjct: 357 SAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS--VSEDNIMQIWQMAENIY 411
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 15/177 (8%)
Query: 276 DIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE-HTA 334
D A D++ ++ H ++ L SG +D + +WN + + + E H
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVL----------SGSDDLTVKLWNWENNWALEQTFEGHEH 141
Query: 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ--VCNLVWSKNVNEL 392
V +A++P ASG DR ++ W+ +T + TG + V + + ++
Sbjct: 142 FVMCVAFNPKDPSTFASG--CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP 199
Query: 393 VSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
I +W Y T S +ATL GH V + P I++G+ D TL+ WN
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 15/177 (8%)
Query: 276 DIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE-HTA 334
D A D++ ++ H ++ L SG +D + +WN + + + E H
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVL----------SGSDDLTVKLWNWENNWALEQTFEGHEH 141
Query: 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ--VCNLVWSKNVNEL 392
V +A++P ASG DR ++ W+ +T + TG + V + + ++
Sbjct: 142 FVMCVAFNPKDPSTFASG--CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP 199
Query: 393 VSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
I +W Y T S +ATL GH V + P I++G+ D TL+ WN
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 15/177 (8%)
Query: 276 DIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE-HTA 334
D A D++ ++ H ++ L SG +D + +WN + + + E H
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVL----------SGSDDLTVKLWNWENNWALEQTFEGHEH 141
Query: 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ--VCNLVWSKNVNEL 392
V +A++P ASG DR ++ W+ +T + TG + V + + ++
Sbjct: 142 FVMCVAFNPKDPSTFASG--CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP 199
Query: 393 VSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
I +W Y T S +ATL GH V + P I++G+ D TL+ WN
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 77/180 (42%), Gaps = 20/180 (11%)
Query: 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV-------LKYCEHTAA 335
F S H V ++++ D AS G D + ++N LK H+ +
Sbjct: 182 FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS 241
Query: 336 VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQV----CNLVWSKNVNE 391
V + WSP + ++ +AD+ I+ WN T + G+++ ++W+K
Sbjct: 242 VFGLTWSPDGTKIASA---SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALV 298
Query: 392 LVSTHGYSQNQIIVWRYPTMSKLATL-TGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
+S +G+ I + P + + + GH + L+ S DG+T+ + + + W++
Sbjct: 299 SISANGF-----INFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 353
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 14/173 (8%)
Query: 201 KLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS--RCKRVRTMEGHRLRVXXXXX 258
KL ++ I + V +N +AVG KV ++ S V+T+ H +
Sbjct: 441 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEITSVAF 499
Query: 259 XXXXXXXXXRDKSILQRDIRAQEDF----VSKLSGHKSEVCGLKWSYDNRELASGGNDNR 314
D+S +F + + H ++V + WS DN LA+G DN
Sbjct: 500 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 559
Query: 315 LFVWNQH--STQPVLKYCEHT-AAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364
+ VWN + S P++ H ++V ++ W + S G D I+FWN
Sbjct: 560 VIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--TIVSAG--QDSNIKFWN 608
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 20/162 (12%)
Query: 300 SYDNRELASGGNDNRLFVWN-QHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR 358
S D + +A GG D+++ V+ ++ +K H A + ++A+S + L+A+ R
Sbjct: 457 SNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT---DQSR 513
Query: 359 CIRFWNTTTNTHLSCMDT----GSQVCNLVWSKNVNELVSTHGYSQNQIIVWR------Y 408
+ ++ N L+ ++ ++V + WS + L + G N +IVW +
Sbjct: 514 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT--GSLDNSVIVWNMNKPSDH 571
Query: 409 PTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
P + K A V++L + TIV+ D ++FWNV
Sbjct: 572 PIIIKGAHAMSSVNSVIWL----NETTIVSAGQDSNIKFWNV 609
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 55/154 (35%), Gaps = 21/154 (13%)
Query: 307 ASGGNDNRLFVWNQHSTQPVLKYC--EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364
ASG + +W+ T +LK + VK I+W + A G G RF
Sbjct: 75 ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE----RF-- 128
Query: 365 TTTNTHLSCMDTGSQVCNLVWSKNVNELVS---------THGYSQNQIIVWRYPTMSKLA 415
H+ DTG+ NL V G N + ++ P +
Sbjct: 129 ----GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS 184
Query: 416 TLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
T HT V + +PDG + GD T+ +N
Sbjct: 185 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN 218
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 281 EDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319
ED K H V GL WS D ++AS D + +WN
Sbjct: 229 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 4/152 (2%)
Query: 299 WSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR 358
+S D + +AS G D L V+ + + +L+ H V A+S + + D+
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFI---ATCSVDK 685
Query: 359 CIRFWNTTTNTHLSCMDTGSQVCNLV-WSKNVNELVSTHGYSQNQIIVWRYPTMSKLATL 417
++ WN+ T + D S+ N ++ + + L+ G S + +W T+
Sbjct: 686 KVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTM 745
Query: 418 TGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
GHT V + SPD + + + + D TL+ W+
Sbjct: 746 FGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 106/262 (40%), Gaps = 28/262 (10%)
Query: 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXXXXXXXXX 267
+D V ++ + +A + KV+IW++ + V T + H +V
Sbjct: 663 EDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLL 722
Query: 268 RDKS---ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW-----N 319
S L+ Q++ + + GH + V ++S D++ LAS D L +W N
Sbjct: 723 ATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSAN 782
Query: 320 QHSTQPVLKYC--------EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL 371
+ + V ++ + VK +WS ++ + I ++ T+ L
Sbjct: 783 ERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK----IFLFDIHTSGLL 838
Query: 372 SCMDTGS----QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYL 427
+ TG Q C+ + ++ SQ + +W + SK+A GH V +
Sbjct: 839 GEIHTGHHSTIQYCDF----SPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGV 894
Query: 428 AISPDGQTIVTGAGDETLRFWN 449
SPDG + +T + D+T+R W
Sbjct: 895 MFSPDGSSFLTSSDDQTIRLWE 916
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 63/164 (38%), Gaps = 12/164 (7%)
Query: 290 HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLL 349
HK V ++++ D + L S +D + VWN + + H VK + L
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLR-GHQETVKDFRLLKNSRLLS 1066
Query: 350 ASGGGTADRCIRFWNTTTNTH---LSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVW 406
S GT ++ WN T C C++ S + + ST +I W
Sbjct: 1067 WSFDGT----VKVWNIITGNKEKDFVCHQGTVLSCDI--SHDATKFSSTSADKTAKI--W 1118
Query: 407 RYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
+ + L L GH V A S D + TG + +R WNV
Sbjct: 1119 SFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNV 1162
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE---------HTAAV 336
+L GH V +S D+ LA+G ++ + +WN S +L C H V
Sbjct: 1128 ELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNV-SNGELLHLCAPLSEEGAATHGGWV 1186
Query: 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367
+ +SP L+++GG I++WN T
Sbjct: 1187 TDLCFSPDGKMLISAGGY-----IKWWNVVT 1212
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 88/235 (37%), Gaps = 13/235 (5%)
Query: 226 GTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXX--XXXXXXXRDKSILQRDIRAQEDF 283
G+ G +++WD + R GH V RDK+I + +
Sbjct: 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY 163
Query: 284 VSKLSGHKSEVCGLKWS--YDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAW 341
+ H V +++S N + S G D + VWN + + + HT + +
Sbjct: 164 TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTV 223
Query: 342 SPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYS-- 399
SP L ASGG D W+ HL +D G + L +S N L + G S
Sbjct: 224 SPD-GSLCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIK 280
Query: 400 ----QNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
+ +IIV + + LA S DGQT+ G D +R W V
Sbjct: 281 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 11/190 (5%)
Query: 268 RDKSILQRDIRAQEDFVS----KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323
RDK+I+ + E L GH V + S D + SG D L +W+ +
Sbjct: 59 RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG 118
Query: 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT--GSQVC 381
++ HT V ++A+S +++ G+ D+ I+ WNT + D V
Sbjct: 119 TTTRRFVGHTKDVLSVAFSSDNRQIVS---GSRDKTIKLWNTLGVCKYTVQDESHSEWVS 175
Query: 382 NLVWSKN-VNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGA 440
+ +S N N ++ + G+ + + VW GHT + + +SPDG +G
Sbjct: 176 CVRFSPNSSNPIIVSCGWDK-LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG 234
Query: 441 GDETLRFWNV 450
D W++
Sbjct: 235 KDGQAMLWDL 244
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 405 VWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPK 455
+W T + GHT VL +A S D + IV+G+ D+T++ WN K
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 162
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 88/235 (37%), Gaps = 13/235 (5%)
Query: 226 GTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXX--XXXXXXXRDKSILQRDIRAQEDF 283
G+ G +++WD + R GH V RDK+I + +
Sbjct: 81 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY 140
Query: 284 VSKLSGHKSEVCGLKWS--YDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAW 341
+ H V +++S N + S G D + VWN + + + HT + +
Sbjct: 141 TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTV 200
Query: 342 SPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYS-- 399
SP L ASGG D W+ HL +D G + L +S N L + G S
Sbjct: 201 SPD-GSLCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIK 257
Query: 400 ----QNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
+ +IIV + + LA S DGQT+ G D +R W V
Sbjct: 258 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 79/190 (41%), Gaps = 11/190 (5%)
Query: 268 RDKSILQRDIRAQEDFVS----KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323
RDK+I+ + E L GH V + S D + SG D L +W+ +
Sbjct: 36 RDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTG 95
Query: 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT--GSQVC 381
++ HT V ++A+S +++ G+ D+ I+ WNT + D V
Sbjct: 96 TTTRRFVGHTKDVLSVAFSSDNRQIVS---GSRDKTIKLWNTLGVCKYTVQDESHSEWVS 152
Query: 382 NLVWSKN-VNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGA 440
+ +S N N ++ + G+ + + VW GHT + + +SPDG +G
Sbjct: 153 CVRFSPNSSNPIIVSCGWDK-LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG 211
Query: 441 GDETLRFWNV 450
D W++
Sbjct: 212 KDGQAMLWDL 221
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 405 VWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPK 455
+W T + GHT VL +A S D + IV+G+ D+T++ WN K
Sbjct: 89 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 139
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 20/188 (10%)
Query: 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346
L GH +V L W+ + + S D RL VWN ++Q H V A++P +
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP--N 119
Query: 347 GLLASGGGTADRCIRF-----WNTTTNTHLSCMDTG----SQVCNLVWSKNVNELVSTHG 397
G + GG C F + N +S + TG + C V + + G
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT---G 176
Query: 398 YSQNQIIVWRYPTMSKLATL-----TGHTFRVLYLAI-SPDGQTIVTGAGDETLRFWNVF 451
++W T +++ +GHT VL L+I S + ++G+ D T+R W++
Sbjct: 177 SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR 236
Query: 452 PSPKSQNT 459
+ ++ T
Sbjct: 237 ITSRAVRT 244
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 29/180 (16%)
Query: 288 SGHKSEVCGLKW-SYDNRELASGGNDNRLFVWN-QHSTQPVLKYCEHTAAVKAIAWSPHL 345
SGH ++V L S + SG D + +W+ + +++ V Y H + ++ + P
Sbjct: 202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261
Query: 346 HGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNEL------------- 392
G G+ D R ++ T L QV N +N NEL
Sbjct: 262 QRF---GTGSDDGTCRLFDMRTGHQL-------QVYNREPDRNDNELPIVTSVAFSISGR 311
Query: 393 VSTHGYSQNQIIVWR---YPTMSKLATL-TGHTFRVLYLAISPDGQTIVTGAGDETLRFW 448
+ GYS VW + L TL H R+ L +S DG + TG+ D+ L+ W
Sbjct: 312 LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 416 TLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQ 457
TL GH+ +V L +P+ IV+ + D L WN S K+
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH 102
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 84/197 (42%), Gaps = 16/197 (8%)
Query: 286 KLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLK-------YCEHTAAVK 337
+L GH+ E GL W+ + + L S +D+ + +W+ + K + HTA V+
Sbjct: 172 RLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 338 AIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS---CMDTGSQVCNLVWSKNVNELVS 394
++W HL G D+ + W+T +N +D + N + +E +
Sbjct: 232 DVSW--HLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFIL 289
Query: 395 THGYSQNQIIVWRYPTMS-KLATLTGHTFRVLYLAISPDGQTIVTGAG-DETLRFWNVFP 452
G + + +W + KL + H + + SP +TI+ +G D L W++
Sbjct: 290 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSK 349
Query: 453 SPKSQN-TDSEIGASSL 468
+ Q+ D+E G L
Sbjct: 350 IGEEQSPEDAEDGPPEL 366
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 269 DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE-LASGGNDNRLFVWN------QH 321
DK++ D+R + + HK E+ ++WS N LAS G D RL VW+ +
Sbjct: 295 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQ 354
Query: 322 STQ------PVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370
S + P L + HTA + +W+P+ ++ S + D ++ W N +
Sbjct: 355 SPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICS--VSEDNIMQVWQMAENIY 409
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 15/177 (8%)
Query: 276 DIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE-HTA 334
D A D++ ++ H ++ L SG +D + +WN + + + E H
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVL----------SGSDDLTVKLWNWENNWALEQTFEGHEH 141
Query: 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ--VCNLVWSKNVNEL 392
V +A++P ASG DR ++ W+ +T + TG + V + + ++
Sbjct: 142 FVMCVAFNPKDPSTFASG--CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKP 199
Query: 393 VSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449
I +W Y T S +ATL GH V + P I++G+ D TL+ WN
Sbjct: 200 YMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 16/139 (11%)
Query: 280 QEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW------NQHSTQPVLKYCEHT 333
+ D ++ + GH++EV G+ WS D LA+ D +++W ++ VL+ EH+
Sbjct: 96 EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ--EHS 153
Query: 334 AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELV 393
VK + W P LLAS + D +R W + C+ + VWS + ++
Sbjct: 154 QDVKHVIWHPS-EALLAS--SSYDDTVRIWKDYDDD-WECVAVLNGHEGTVWSSDFDKTE 209
Query: 394 STH----GYSQNQIIVWRY 408
G + + VW+Y
Sbjct: 210 GVFRLCSGSDDSTVRVWKY 228
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 23/171 (13%)
Query: 299 WSYDNRE--LASGGNDNRLFV----WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASG 352
WS+D + LA+G D ++ + ++ + VL H A++++AW PH LLA+
Sbjct: 18 WSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-SLLAA- 75
Query: 353 GGTADRCIRFW------NTTTNTHLSCMDTG--SQVCNLVWSKNVNELVSTHGYSQNQII 404
G+ D + W + T L + G ++V + WS + L + +
Sbjct: 76 -GSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS--RDKSVW 132
Query: 405 VWRYPTMSK----LATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451
+W + ++ L H+ V ++ P + + + D+T+R W +
Sbjct: 133 IWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY 183
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 35/192 (18%)
Query: 285 SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPH 344
+ L GH + V +++ + +G +D + V++ + + +L+ H V A+ ++
Sbjct: 115 TTLRGHXTSVITC-LQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG 173
Query: 345 LHGLLASGGGTADRCIRFWNTTTN--THLSCMDTGSQVC-NLVWSKNVNELVSTHGYSQN 401
G+L SG + DR +R W+ TH+ + C ++V KN+ +V+ G N
Sbjct: 174 --GILVSG--STDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT--GSRDN 227
Query: 402 QIIVWRYPTMSKL-----------------------ATLTGHTFRVLYLAISPDGQTIVT 438
+ VW+ P S + L GH V +S G +V+
Sbjct: 228 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVR--TVSGHGNIVVS 285
Query: 439 GAGDETLRFWNV 450
G+ D TL W+V
Sbjct: 286 GSYDNTLIVWDV 297
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 77/204 (37%), Gaps = 27/204 (13%)
Query: 269 DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN--------- 319
DK I D + F+ +LSGH V LK+++ L SG D + VW+
Sbjct: 141 DKXIRVYD-SINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDIKKGCCTHV 198
Query: 320 ---QHSTQPVLKYCEHTAAVKAIA----------WSPHLHGLLASGGGTADRCIRFWNTT 366
+ST L E+ +K I W + G D + F
Sbjct: 199 FEGHNSTVRCLDIVEY-KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPE 257
Query: 367 TNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLY 426
N + + G S + N +VS G N +IVW L L+GHT R+
Sbjct: 258 ENPYFVGVLRGHXASVRTVSGHGNIVVS--GSYDNTLIVWDVAQXKCLYILSGHTDRIYS 315
Query: 427 LAISPDGQTIVTGAGDETLRFWNV 450
+ + ++ + D T+R W++
Sbjct: 316 TIYDHERKRCISASXDTTIRIWDL 339
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 6/122 (4%)
Query: 243 VRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD 302
V + GH V D +++ D+ AQ + LSGH + + ++
Sbjct: 263 VGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDV-AQXKCLYILSGHTDRIYSTIYDHE 321
Query: 303 NRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D + +W+ + + HTA V + S L S AD IR
Sbjct: 322 RKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDK---FLVSAA--ADGSIRG 376
Query: 363 WN 364
W+
Sbjct: 377 WD 378
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 24/186 (12%)
Query: 269 DKSILQRDIRAQ-EDFVSKLSGHKSEVCGLKWSYDN--RELASGGNDNRLFVWNQHSTQ- 324
DK+I ++ + + L+GH+ V + W++ LAS D ++ +W + + +
Sbjct: 32 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 91
Query: 325 -PVLKYCEHTAAVKAIAWSPHLHG---LLASGGGTADRCIRFWNTTTNTHLSCMDTGSQV 380
+ + H+A+V ++ W+PH +G L+AS G + F T + + V
Sbjct: 92 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS-VVEFKENGTTSPIIIDAHAIGV 150
Query: 381 CNLVWSKNVNELVSTH-----------GYSQNQIIVWRYPTMSKL----ATLTGHTFRVL 425
+ W+ E H G + N + +W+Y + ++ +TL GH+ V
Sbjct: 151 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 210
Query: 426 YLAISP 431
+A SP
Sbjct: 211 DVAWSP 216
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 24/186 (12%)
Query: 269 DKSILQRDIRAQ-EDFVSKLSGHKSEVCGLKWSYDN--RELASGGNDNRLFVWNQHSTQ- 324
DK+I ++ + + L+GH+ V + W++ LAS D ++ +W + + +
Sbjct: 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRW 89
Query: 325 -PVLKYCEHTAAVKAIAWSPHLHG---LLASGGGTADRCIRFWNTTTNTHLSCMDTGSQV 380
+ + H+A+V ++ W+PH +G L+AS G + F T + + V
Sbjct: 90 SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS-VVEFKENGTTSPIIIDAHAIGV 148
Query: 381 CNLVWSKNVNELVSTH-----------GYSQNQIIVWRYPTMSKL----ATLTGHTFRVL 425
+ W+ E H G + N + +W+Y + ++ +TL GH+ V
Sbjct: 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208
Query: 426 YLAISP 431
+A SP
Sbjct: 209 DVAWSP 214
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 24/186 (12%)
Query: 269 DKSILQRDIRAQ-EDFVSKLSGHKSEVCGLKWSYDN--RELASGGNDNRLFVWNQHSTQ- 324
DK+I ++ + + L+GH+ V + W++ LAS D ++ +W + + +
Sbjct: 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 89
Query: 325 -PVLKYCEHTAAVKAIAWSPHLHG---LLASGGGTADRCIRFWNTTTNTHLSCMDTGSQV 380
+ + H+A+V ++ W+PH +G L+AS G + F T + + V
Sbjct: 90 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS-VVEFKENGTTSPIIIDAHAIGV 148
Query: 381 CNLVWSKNVNELVSTH-----------GYSQNQIIVWRYPTMSKL----ATLTGHTFRVL 425
+ W+ E H G + N + +W+Y + ++ +TL GH+ V
Sbjct: 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208
Query: 426 YLAISP 431
+A SP
Sbjct: 209 DVAWSP 214
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 80/186 (43%), Gaps = 24/186 (12%)
Query: 269 DKSILQRDIRAQ-EDFVSKLSGHKSEVCGLKWSYDN--RELASGGNDNRLFVWNQHSTQ- 324
DK+I ++ + + L+GH+ V + W++ LAS D ++ +W + + +
Sbjct: 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRW 89
Query: 325 -PVLKYCEHTAAVKAIAWSPHLHG---LLASGGGTADRCIRFWNTTTNTHLSCMDTGSQV 380
+ + H+A+V ++ W+PH +G L+AS G + F T + + V
Sbjct: 90 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS-VVEFKENGTTSPIIIDAHAIGV 148
Query: 381 CNLVWSKNVNELVSTH-----------GYSQNQIIVWRY----PTMSKLATLTGHTFRVL 425
+ W+ E H G + N + +W+Y T +TL GH+ V
Sbjct: 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208
Query: 426 YLAISP 431
+A SP
Sbjct: 209 DVAWSP 214
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 24/186 (12%)
Query: 269 DKSILQRDIRAQ-EDFVSKLSGHKSEVCGLKWSYDN--RELASGGNDNRLFVWNQHSTQ- 324
DK+I ++ + + L+GH+ V + W++ LAS D ++ +W + + +
Sbjct: 30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRW 89
Query: 325 -PVLKYCEHTAAVKAIAWSPHLHG---LLASGGGTADRCIRFWNTTTNTHLSCMDTGSQV 380
+ + H+A+V ++ W+PH +G L+AS G + F T + + V
Sbjct: 90 SQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKV-SVVEFKENGTTSPIIIDAHAIGV 148
Query: 381 CNLVWSKNVNELVSTH-----------GYSQNQIIVWRYPTMSKL----ATLTGHTFRVL 425
+ W+ E H G + N + +W+Y + ++ +TL GH+ V
Sbjct: 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVR 208
Query: 426 YLAISP 431
+A SP
Sbjct: 209 DVAWSP 214
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 284 VSKLSGHKSEVCGLKWS-YDNRELASGGNDNRLFVWNQHS-------TQPVLKYCEHTAA 335
V + GH + V + W +++ +ASG D + VW +PV+ HT
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 336 VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368
V +AW P +L S G D I W+ T
Sbjct: 134 VGIVAWHPTAQNVLLSAG--XDNVILVWDVGTG 164
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 44/121 (36%), Gaps = 41/121 (33%)
Query: 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCN-LVWSKNVN 390
HTA V IAW PH ++AS GS+ C +VW
Sbjct: 80 HTAPVLDIAWXPHNDNVIAS-------------------------GSEDCTVMVWEIPDG 114
Query: 391 ELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAG-DETLRFWN 449
LV P + TL GHT RV +A P Q ++ AG D + W+
Sbjct: 115 GLV--------------LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWD 160
Query: 450 V 450
V
Sbjct: 161 V 161
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 269 DKSILQRDIR-AQEDFVSKLSGHKSEVCGLKWS---YDNRELASGGNDNRLFVWNQH--S 322
D+S+ D+R + ++ L GH+ V + W+ Y N LAS D ++ +W + +
Sbjct: 34 DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNI-LASCSYDRKVIIWREENGT 92
Query: 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGG 353
+ ++ H ++V ++ W+PH +GL+ + G
Sbjct: 93 WEKSHEHAGHDSSVNSVCWAPHDYGLILACG 123
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 83/228 (36%), Gaps = 26/228 (11%)
Query: 245 TMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR 304
T+ GH V D +++ + F+ +LSGH V LK+++
Sbjct: 116 TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 175
Query: 305 ELASGGNDNRLFVWN------------QHSTQPVLKYCEHTAAVKAI----------AWS 342
L SG D + VW+ +ST L E+ +K I W
Sbjct: 176 -LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY-KNIKYIVTGSRDNTLHVWK 233
Query: 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402
+ G D + F N + + G S + N +VS G N
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS--GSYDNT 291
Query: 403 IIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
+IVW M L L+GHT R+ + + ++ + D T+R W++
Sbjct: 292 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 4/140 (2%)
Query: 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246
N + +W+ K + G D + S + + + ++IWD + + T+
Sbjct: 290 NTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 348
Query: 247 EGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL 306
+GH V D SI D D+ K S H + + + Y + +
Sbjct: 349 QGHTALVGLLRLSDKFLVSAAADGSIRGWD---ANDYSRKFSYHHTNLSAITTFYVSDNI 405
Query: 307 ASGGNDNRLFVWNQHSTQPV 326
G++N+ ++N S + V
Sbjct: 406 LVSGSENQFNIYNLRSGKLV 425
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 6/122 (4%)
Query: 243 VRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD 302
V + GH V D +++ D+ AQ + LSGH + + ++
Sbjct: 263 VGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV-AQMKCLYILSGHTDRIYSTIYDHE 321
Query: 303 NRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362
+ S D + +W+ + + + HTA V + S L S AD IR
Sbjct: 322 RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK---FLVSAA--ADGSIRG 376
Query: 363 WN 364
W+
Sbjct: 377 WD 378
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 284 VSKLSGHKSEVCGLKWS-YDNRELASGGNDNRLFVWNQHS-------TQPVLKYCEHTAA 335
V + GH + V + W +++ +ASG D + VW +PV+ HT
Sbjct: 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 336 VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368
V +AW P +L S G D I W+ T
Sbjct: 134 VGIVAWHPTAQNVLLSAG--CDNVILVWDVGTG 164
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 45/123 (36%), Gaps = 41/123 (33%)
Query: 330 CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCN-LVWSKN 388
C HTA V IAW PH ++AS GS+ C +VW
Sbjct: 78 CGHTAPVLDIAWCPHNDNVIAS-------------------------GSEDCTVMVWEIP 112
Query: 389 VNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAG-DETLRF 447
LV P + TL GHT RV +A P Q ++ AG D +
Sbjct: 113 DGGLV--------------LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILV 158
Query: 448 WNV 450
W+V
Sbjct: 159 WDV 161
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 67/175 (38%), Gaps = 24/175 (13%)
Query: 179 NVLAVGLGNC-VYLW--NACS---SKVTKLC---DLGIDDSVCSVGWANRNTHL-AVGTS 228
NVLA G N +++W N C+ S T L + D V S+ W H+ A S
Sbjct: 127 NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS 186
Query: 229 HGKVQIWDASRCKRVRTME--------GHRLRVXX----XXXXXXXXXXXXRDKSILQRD 276
IWD K V + +L V D SIL D
Sbjct: 187 SNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD 246
Query: 277 IRAQEDFVSKLS-GHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHSTQPVLKY 329
+R + L+ GH+ + L W + D L S G DN + +WN S + + ++
Sbjct: 247 LRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF 301
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 113/290 (38%), Gaps = 53/290 (18%)
Query: 163 ALQDDFYLNLVDWSSHN-VLAVGLGNC---VYLWNACSSKVTKLCDLGI-DDSVCSVGW- 216
+LQ D N +DWS +N ++A L N +Y N ++ + + SV +V +
Sbjct: 63 SLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFN 122
Query: 217 ANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRD 276
A ++ LA G ++G++ IWD ++C + +S+ D
Sbjct: 123 AKQDNVLASGGNNGEIFIWDMNKCTESPS----------------NYTPLTPGQSMSSVD 166
Query: 277 IRAQEDFVSKLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQPV--LKYCEHT 333
EV L W+ AS G+ N +W+ + + V L Y
Sbjct: 167 ----------------EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN 210
Query: 334 AAVK----AIAWSPHLHGLLASGGGT-ADRCIRFWNT-TTNTHLSCMDTGSQ--VCNLVW 385
+ +K + W P +A+ G+ D I W+ NT L ++ G Q + +L W
Sbjct: 211 SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDW 270
Query: 386 SKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH---TFRVLYLAISPD 432
L+ + G N +++W + +L+ F+ + +PD
Sbjct: 271 CHQDEHLLLSSGR-DNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPD 319
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 80/188 (42%), Gaps = 24/188 (12%)
Query: 284 VSKLSGHKSEVCGLKW-SYDNRELASGGNDNRLFVWNQHS-TQPVLKYCEHTAA------ 335
+++ S H S V +K+ + + LASGGN+ +F+W+ + T+ Y T
Sbjct: 106 MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV 165
Query: 336 --VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN---THLSCMDTGS----QVCNLVWS 386
V ++AW+ L + AS G + I W+ HLS S Q+ + W
Sbjct: 166 DEVISLAWNQSLAHVFASAGSSNFASI--WDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH 223
Query: 387 KNVNELVSTHGYSQNQ--IIVWRYPTMSK-LATLT-GHTFRVLYLA-ISPDGQTIVTGAG 441
+ V+T S N I++W + L TL GH +L L D +++
Sbjct: 224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR 283
Query: 442 DETLRFWN 449
D T+ WN
Sbjct: 284 DNTVLLWN 291
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 106/276 (38%), Gaps = 16/276 (5%)
Query: 184 GLGNCVYLWNAC----SSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS- 238
G CV +W+ S V++L L D+ + S L VG + IWD +
Sbjct: 69 GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128
Query: 239 ---RCKRVRTMEGHRLRVXXXXXXXXXXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVC 295
R K T D +I D+ Q V + GH
Sbjct: 129 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGAS 187
Query: 296 GLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGT 355
+ S D +L +GG DN + W+ + + ++ + T+ + ++ + P LA G +
Sbjct: 188 CIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGE-WLAVGMES 245
Query: 356 ADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLA 415
++ + N L + S V +L ++ VST N + WR P + +
Sbjct: 246 SNVEVLHVNKPDKYQLHLHE--SCVLSLKFAYCGKWFVSTG--KDNLLNAWRTPYGASIF 301
Query: 416 TLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451
+ + VL IS D + IVTG+GD+ + V
Sbjct: 302 Q-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 30/71 (42%)
Query: 399 SQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQN 458
S I VW + + GHT + IS DG + TG D T+R W++ + Q
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ 220
Query: 459 TDSEIGASSLG 469
D SLG
Sbjct: 221 HDFTSQIFSLG 231
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 290 HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAW--SPHLHG 347
H V + WS D ++ + D +W+ S Q ++ +H A VK I W +P+
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ-AIQIAQHDAPVKTIHWIKAPNYSC 143
Query: 348 LLASGGGTADRCIRFWNT 365
++ G+ D+ ++FW+T
Sbjct: 144 VMT---GSWDKTLKFWDT 158
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 72/191 (37%), Gaps = 11/191 (5%)
Query: 268 RDKSILQRDIRAQEDF----VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323
RDK+++ + + V GH V + D S D L +W+ +
Sbjct: 38 RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG 97
Query: 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN---THLSCMDTGSQV 380
+ ++ H + V ++ +++ G+ D+ I+ W T L D SQV
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIIS---GSRDKTIKVWTIKGQCLATLLGHNDWVSQV 154
Query: 381 CNLVWSKNVNELVSTHGYSQNQII-VWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTG 439
+ K ++ V+ ++++ W A GH + L SPDG I +
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Query: 440 AGDETLRFWNV 450
D + WN+
Sbjct: 215 GKDGEIMLWNL 225
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 78/217 (35%), Gaps = 14/217 (6%)
Query: 245 TMEGHRLRVXXXXXXXXX---XXXXXRDKSILQRDIRAQEDF----VSKLSGHKSEVCGL 297
T+EGH V RDK+++ + + V GH V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 298 KWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTAD 357
+ D S D L +W+ + + ++ H + V ++ +++ G+ D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS---GSRD 128
Query: 358 RCIRFWNTTTN---THLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQII-VWRYPTMSK 413
+ I+ W T L D SQV + K ++ V+ ++++ W
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 414 LATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
A GH + L SPDG I + D + WN+
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 78/217 (35%), Gaps = 14/217 (6%)
Query: 245 TMEGHRLRVXXXXXXXXX---XXXXXRDKSILQRDIRAQEDF----VSKLSGHKSEVCGL 297
T+EGH V RDK+++ + + V GH V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 298 KWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTAD 357
+ D S D L +W+ + + ++ H + V ++ +++ G+ D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS---GSRD 128
Query: 358 RCIRFWNTTTN---THLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQII-VWRYPTMSK 413
+ I+ W T L D SQV + K ++ V+ ++++ W
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 414 LATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
A GH + L SPDG I + D + WN+
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL 225
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 72/191 (37%), Gaps = 11/191 (5%)
Query: 268 RDKSILQRDIRAQEDF----VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323
RDK+++ + + V GH V + D S D L +W+ +
Sbjct: 32 RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG 91
Query: 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN---THLSCMDTGSQV 380
+ ++ H + V ++ +++ G+ D+ I+ W T L D SQV
Sbjct: 92 ETYQRFVGHKSDVMSVDIDKKASMIIS---GSRDKTIKVWTIKGQCLATLLGHNDWVSQV 148
Query: 381 CNLVWSKNVNELVSTHGYSQNQII-VWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTG 439
+ K ++ V+ ++++ W A GH + L SPDG I +
Sbjct: 149 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 208
Query: 440 AGDETLRFWNV 450
D + WN+
Sbjct: 209 GKDGEIMLWNL 219
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 72/191 (37%), Gaps = 11/191 (5%)
Query: 268 RDKSILQRDIRAQEDF----VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323
RDK+++ + + V GH V + D S D L +W+ +
Sbjct: 38 RDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG 97
Query: 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN---THLSCMDTGSQV 380
+ ++ H + V ++ +++ G+ D+ I+ W T L D SQV
Sbjct: 98 ETYQRFVGHKSDVMSVDIDKKASMIIS---GSRDKTIKVWTIKGQCLATLLGHNDWVSQV 154
Query: 381 CNLVWSKNVNELVSTHGYSQNQII-VWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTG 439
+ K ++ V+ ++++ W A GH + L SPDG I +
Sbjct: 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214
Query: 440 AGDETLRFWNV 450
D + WN+
Sbjct: 215 GKDGEIMLWNL 225
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 77/217 (35%), Gaps = 14/217 (6%)
Query: 245 TMEGHRLRVXXXXXXXXX---XXXXXRDKSILQRDIRAQEDF----VSKLSGHKSEVCGL 297
T+EGH V RDK+++ + + V GH V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 298 KWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTAD 357
+ D S D L +W+ + + ++ H + V ++ +++ G+ D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIIS---GSRD 128
Query: 358 RCIRFWNTTTN---THLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQII-VWRYPTMSK 413
+ I+ W T L D SQV + K ++ V+ ++ + W
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQI 188
Query: 414 LATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
A GH + L SPDG I + D + WN+
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNL 225
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 73/183 (39%), Gaps = 38/183 (20%)
Query: 157 KILDAPALQDDFYLNLVD-WSSHNVLAVGLGNCVYLWNACSSKVTKLCDL---------- 205
K+ D LQ N + SH++ V +C+ KV +LCDL
Sbjct: 125 KVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKV-QLCDLKSGSCSHILQ 183
Query: 206 GIDDSVCSVGWANRNTH-LAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXXXXXXXX 264
G + +V W+ R + LA ++ +V++WD VR G +
Sbjct: 184 GHRQEILAVSWSPRYDYILATASADSRVKLWD------VRRASGCLI------------- 224
Query: 265 XXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324
++ Q + + + S + H +V GL ++ D L + G DNR+ +WN + +
Sbjct: 225 ------TLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278
Query: 325 PVL 327
L
Sbjct: 279 NTL 281
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 75/168 (44%), Gaps = 25/168 (14%)
Query: 302 DNRELASGGNDNRLFVWN-QHSTQPVLKYCE------------HTAAVKAIAWSPHLHGL 348
+ R + SGG+D + +++ ++S++ C+ H +V+ + W PH G+
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 349 LASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTH-----GYSQNQI 403
S + D+ ++ W+T T L D V+S +++ + + H G ++
Sbjct: 115 FTS--SSFDKTLKVWDTNT---LQTADV-FNFEETVYSHHMSPVSTKHCLVAVGTRGPKV 168
Query: 404 IVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIV-TGAGDETLRFWNV 450
+ + S L GH +L ++ SP I+ T + D ++ W+V
Sbjct: 169 QLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW--NQHSTQPVLKYCEHTAAVKAIAW 341
V +L H +V G+ W+ D+ + + G D +VW + +P L A + + W
Sbjct: 45 VHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 104
Query: 342 SPHLHGLLASGG 353
+P+ G
Sbjct: 105 APNEKKFAVGSG 116
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 71/177 (40%), Gaps = 8/177 (4%)
Query: 275 RDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTA 334
RD R D L GH+ V + S+ AS D + +W+ + + +
Sbjct: 66 RDERL--DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPV 123
Query: 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-GSQVCNLVWSKNVNELV 393
+A+SP L GT + + + +DT G + ++ +S + L
Sbjct: 124 DAWTLAFSPDSQYLAT---GTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLA 180
Query: 394 STHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
S G I ++ T L TL GH + L SPD Q +VT + D ++ ++V
Sbjct: 181 S--GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 3/134 (2%)
Query: 211 VCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRL--RVXXXXXXXXXXXXXXR 268
+ S+ ++ +LA G G + I+D + K + T+EGH + R
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 269 DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK 328
D I D++ + LSGH S V + + D+ S +D + VW+ + V
Sbjct: 227 DGYIKIYDVQ-HANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT 285
Query: 329 YCEHTAAVKAIAWS 342
+ +H V + ++
Sbjct: 286 FFDHQDQVWGVKYN 299
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 106/254 (41%), Gaps = 19/254 (7%)
Query: 208 DDSVCSVGWA---NRNTHLAVGTSHG---KVQIWDASRCKRVRTMEGHRLRVXXXXXXXX 261
DD++ SV W N+ V S KV W R ++EGH+L V
Sbjct: 32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHT 91
Query: 262 --XXXXXXRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319
D I D+ + S +G + L +S D++ LA+G + ++ ++
Sbjct: 92 LPIAASSSLDAHIRLWDLENGKQIKSIDAG-PVDAWTLAFSPDSQYLATGTHVGKVNIFG 150
Query: 320 QHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ 379
S + + +IA+SP LASG D I ++ T L ++ +
Sbjct: 151 VESGKKEYSLDTRGKFILSIAYSPD-GKYLASG--AIDGIINIFDIATGKLLHTLEGHAM 207
Query: 380 -VCNLVWSKNVNELV--STHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTI 436
+ +L +S + LV S GY I ++ + TL+GH VL +A PD
Sbjct: 208 PIRSLTFSPDSQLLVTASDDGY----IKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 263
Query: 437 VTGAGDETLRFWNV 450
V+ + D++++ W+V
Sbjct: 264 VSSSSDKSVKVWDV 277
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW--NQHSTQPVLKYCEHTAAVKAIAW 341
V +L H +V G+ W+ D+ + + G D +VW + +P L A + + W
Sbjct: 45 VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 104
Query: 342 SPHLHGLLASGG 353
+P+ G
Sbjct: 105 APNEKKFAVGSG 116
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 69/171 (40%), Gaps = 19/171 (11%)
Query: 292 SEVCGLKWSYDNRELASGGNDNRLFVWNQ-HSTQPVLKYCEHTAAVKAIAWSPHLHGLLA 350
++V L WS+D + +G + L +WN+ + VL + H A + ++ W+ +++
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNF--HRAPIVSVKWNKDGTHIIS 166
Query: 351 SGGGTADRCIRFWNTTTNT---HLSCMDTGSQVCNLV-----WSKNVN-ELVSTHGYS-- 399
+ WN + T H +TG N S V+ E V +
Sbjct: 167 M---DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIP 223
Query: 400 --QNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFW 448
+ I V++ + L GH + L + + +++ + D TLR W
Sbjct: 224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 421 TFRVLYLAISPDGQTIVTGAGDETLRFWN 449
T +V LA S DG +IVTG + LR WN
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN 136
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL 345
KL GH + L+++ N+ L S +D L +W+ + + H+ ++ + +W
Sbjct: 242 KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD 301
Query: 346 HGLLASGGGTADRCIRFWNTTTNTHLSC 373
+ S D +R W+ NT L+
Sbjct: 302 KVISCS----MDGSVRLWSLKQNTLLAL 325
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 58/158 (36%), Gaps = 5/158 (3%)
Query: 199 VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVXXXXX 258
V+K C DD V +V + T G+ +++WD ++ + + H +V
Sbjct: 118 VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAA 177
Query: 259 X---XXXXXXXXRDKSILQRDIRAQEDFVS-KLSGHKSEVCGLKWSYDNRELASGGNDN- 313
D IL D R + S L W E+ G++N
Sbjct: 178 SPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237
Query: 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLAS 351
+ + + ST VL H+ V + +SPH LAS
Sbjct: 238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLAS 275
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 305 ELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364
+ SG D + VW+ + Y H A V +A SPH + S + D I W+
Sbjct: 141 QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLS--CSEDNRILLWD 198
Query: 365 TTT---NTHLSCMDTGSQVCNLVWSKNVNEL 392
T + + C G +L W +E+
Sbjct: 199 TRCPKPASQIGCSAPGYLPTSLAWHPQQSEV 229
>pdb|1JIW|P Chain P, Crystal Structure Of The Apr-Aprin Complex
pdb|1AKL|A Chain A, Alkaline Protease From Pseudomonas Aeruginosa Ifo3080
pdb|3VI1|A Chain A, Crystal Structure Of Pseudomonas Aerginosa Alkaline
Protease Complexed With Substance P(1-6)
pdb|3VI1|B Chain B, Crystal Structure Of Pseudomonas Aerginosa Alkaline
Protease Complexed With Substance P(1-6)
Length = 470
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 355 TADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKL 414
T D F + T S + S++ VW N+ + G+SQNQ I +S +
Sbjct: 254 TGDTVYGFNSNTERDFYSATSSSSKLVFSVWDAGGNDTLDFSGFSQNQKINLNEKALSDV 313
Query: 415 ATLTGH 420
L G+
Sbjct: 314 GGLKGN 319
>pdb|1KAP|P Chain P, Three-Dimensional Structure Of The Alkaline Protease Of
Pseudomonas Aeruginosa: A Two-Domain Protein With A
Calcium Binding Parallel Beta Roll Motif
Length = 479
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 355 TADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKL 414
T D F + T S + S++ VW N+ + G+SQNQ I +S +
Sbjct: 263 TGDTVYGFNSNTERDFYSATSSSSKLVFSVWDAGGNDTLDFSGFSQNQKINLNEKALSDV 322
Query: 415 ATLTGH 420
L G+
Sbjct: 323 GGLKGN 328
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 361 RFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY---------SQN-QIIVWRYPT 410
RF TT + +D+ + + +V+E+ + SQ+ Q+ +W
Sbjct: 108 RFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD 167
Query: 411 MSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFW 448
S TL GH V +AI G+ +++ + D T+R W
Sbjct: 168 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 361 RFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY---------SQN-QIIVWRYPT 410
RF TT + +D+ + + +V+E+ + SQ+ Q+ +W
Sbjct: 111 RFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD 170
Query: 411 MSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFW 448
S TL GH V +AI G+ +++ + D T+R W
Sbjct: 171 GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 405 VWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
VW +L TL GHT + + + + VTG+ D +++ W+V
Sbjct: 58 VWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103
>pdb|3N4J|A Chain A, Putative Rna Methyltransferase From Yersinia Pestis
pdb|3N4K|A Chain A, Putative Rna Methyltransferase From Yersinia Pestis In
Complex With S- Adenosyl-L-Homocysteine.
pdb|3N4K|B Chain B, Putative Rna Methyltransferase From Yersinia Pestis In
Complex With S- Adenosyl-L-Homocysteine
Length = 165
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 8/46 (17%)
Query: 87 ALLRAALFGPETPEKKDVLGPPSGRNIFRFKSETRRSLHSLSPFGF 132
A+L LF PE P P+ NI R + T LH + P GF
Sbjct: 3 AMLNIVLFEPEIP--------PNTGNIIRLCANTGCQLHLIKPLGF 40
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 409 PTMSKLATLT--GHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
PT S A+L H+ V+ L+ + G+T+ + D LRFW+V
Sbjct: 277 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 409 PTMSKLATLT--GHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450
PT S A+L H+ V+ L+ + G+T+ + D LRFW+V
Sbjct: 287 PTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 330
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 371 LSCMDTGSQVCNLVWSKNVNELVSTHGYS----QNQIIVWRYPTMSKLATLTGHTFRVLY 426
LSC+ TGS V ++W K+ LVST +N ++ RY +KL G T R
Sbjct: 28 LSCVATGSPVPTILWRKD-GVLVSTQDSRIKQLENGVLQIRY---AKL----GDTGRYTC 79
Query: 427 LAISPDGQ 434
+A +P G+
Sbjct: 80 IASTPSGE 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,042,740
Number of Sequences: 62578
Number of extensions: 626841
Number of successful extensions: 1923
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1157
Number of HSP's gapped (non-prelim): 399
length of query: 474
length of database: 14,973,337
effective HSP length: 102
effective length of query: 372
effective length of database: 8,590,381
effective search space: 3195621732
effective search space used: 3195621732
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)