Query 011971
Match_columns 474
No_of_seqs 933 out of 2979
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 07:14:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0305 Anaphase promoting com 100.0 4.6E-68 9.9E-73 523.0 42.1 418 40-459 40-469 (484)
2 KOG0271 Notchless-like WD40 re 100.0 1.2E-42 2.6E-47 321.3 25.6 295 166-467 114-456 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 4.1E-42 8.8E-47 321.7 23.6 282 161-449 169-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 9.4E-42 2E-46 315.4 25.1 278 166-449 156-479 (480)
5 KOG0286 G-protein beta subunit 100.0 4.3E-39 9.3E-44 288.8 32.5 273 170-449 58-343 (343)
6 KOG0272 U4/U6 small nuclear ri 100.0 3.8E-39 8.2E-44 301.8 21.1 258 205-468 172-436 (459)
7 KOG0279 G protein beta subunit 100.0 3E-37 6.5E-42 275.4 30.3 275 170-451 18-313 (315)
8 KOG0315 G-protein beta subunit 100.0 1.9E-35 4.1E-40 259.8 29.2 270 180-458 13-295 (311)
9 KOG0273 Beta-transducin family 100.0 5.2E-35 1.1E-39 277.4 31.9 280 164-451 232-523 (524)
10 KOG0273 Beta-transducin family 100.0 2.7E-35 5.7E-40 279.3 28.1 305 148-465 164-496 (524)
11 KOG0284 Polyadenylation factor 100.0 7.3E-37 1.6E-41 285.3 17.0 288 157-451 86-380 (464)
12 KOG0295 WD40 repeat-containing 100.0 7E-35 1.5E-39 268.6 25.4 278 167-450 108-405 (406)
13 cd00200 WD40 WD40 domain, foun 100.0 3.3E-33 7.2E-38 265.6 37.7 275 168-449 10-289 (289)
14 KOG0291 WD40-repeat-containing 100.0 2.5E-33 5.4E-38 278.9 33.0 286 167-458 307-619 (893)
15 KOG0296 Angio-associated migra 100.0 5E-33 1.1E-37 256.6 30.5 275 170-451 67-398 (399)
16 KOG0281 Beta-TrCP (transducin 100.0 4.6E-35 1E-39 268.0 16.2 276 169-460 199-486 (499)
17 KOG0263 Transcription initiati 100.0 4.8E-34 1E-38 286.5 24.0 243 208-456 378-654 (707)
18 KOG0285 Pleiotropic regulator 100.0 6.2E-33 1.3E-37 255.1 27.0 279 167-454 151-442 (460)
19 KOG0284 Polyadenylation factor 100.0 2.4E-34 5.2E-39 268.5 16.8 255 208-469 96-357 (464)
20 KOG0266 WD40 repeat-containing 100.0 2E-32 4.3E-37 280.0 32.0 277 168-451 160-454 (456)
21 KOG0285 Pleiotropic regulator 100.0 3.6E-33 7.7E-38 256.6 23.6 255 206-468 149-406 (460)
22 KOG0263 Transcription initiati 100.0 7.2E-33 1.6E-37 278.1 27.9 264 169-438 380-702 (707)
23 KOG0645 WD40 repeat protein [G 100.0 7.3E-32 1.6E-36 240.0 30.6 273 169-451 16-311 (312)
24 KOG0265 U5 snRNP-specific prot 100.0 2.7E-32 5.8E-37 246.0 27.6 274 169-450 49-337 (338)
25 KOG0315 G-protein beta subunit 100.0 6.8E-32 1.5E-36 237.4 27.2 258 167-430 40-309 (311)
26 KOG0295 WD40 repeat-containing 100.0 7.3E-33 1.6E-37 255.4 21.8 250 206-460 106-373 (406)
27 KOG0318 WD40 repeat stress pro 100.0 5E-31 1.1E-35 253.3 34.9 282 169-456 192-565 (603)
28 KOG0286 G-protein beta subunit 100.0 2.9E-31 6.3E-36 238.5 30.3 248 206-458 53-310 (343)
29 KOG0279 G protein beta subunit 100.0 2.6E-31 5.6E-36 237.4 29.1 246 206-459 13-270 (315)
30 KOG0319 WD40-repeat-containing 100.0 4.9E-32 1.1E-36 269.5 26.1 275 171-452 328-620 (775)
31 KOG0291 WD40-repeat-containing 100.0 8.4E-31 1.8E-35 261.0 33.2 279 170-454 192-511 (893)
32 PLN00181 protein SPA1-RELATED; 100.0 3.2E-30 7E-35 282.1 40.3 277 166-450 482-792 (793)
33 KOG0266 WD40 repeat-containing 100.0 5.3E-31 1.2E-35 269.5 32.0 251 207-462 158-420 (456)
34 KOG0278 Serine/threonine kinas 100.0 4E-32 8.6E-37 239.0 18.7 279 169-456 16-302 (334)
35 KOG0282 mRNA splicing factor [ 100.0 7.1E-32 1.5E-36 257.0 18.9 273 169-449 216-503 (503)
36 KOG0276 Vesicle coat complex C 100.0 1.2E-30 2.7E-35 254.9 27.7 278 169-452 15-299 (794)
37 KOG0277 Peroxisomal targeting 100.0 5.1E-31 1.1E-35 232.6 22.5 276 171-450 12-308 (311)
38 KOG0316 Conserved WD40 repeat- 100.0 4.1E-30 8.8E-35 224.5 26.3 271 169-450 19-298 (307)
39 KOG0274 Cdc4 and related F-box 100.0 4.8E-30 1E-34 262.6 30.8 281 166-458 207-489 (537)
40 KOG0316 Conserved WD40 repeat- 100.0 1.9E-30 4.1E-35 226.6 22.7 249 206-463 15-269 (307)
41 KOG0306 WD40-repeat-containing 100.0 3.1E-30 6.8E-35 256.8 27.2 285 159-453 367-666 (888)
42 KOG0319 WD40-repeat-containing 100.0 3.1E-30 6.8E-35 256.7 27.1 288 177-471 293-598 (775)
43 KOG0281 Beta-TrCP (transducin 100.0 5.1E-32 1.1E-36 248.1 13.1 235 207-457 196-434 (499)
44 cd00200 WD40 WD40 domain, foun 100.0 5.6E-29 1.2E-33 236.5 33.2 245 206-456 7-254 (289)
45 KOG0313 Microtubule binding pr 100.0 1.2E-29 2.5E-34 235.4 27.0 278 166-452 104-419 (423)
46 KOG0318 WD40 repeat stress pro 100.0 7.1E-29 1.5E-33 238.6 32.4 282 167-458 59-357 (603)
47 PTZ00421 coronin; Provisional 100.0 1.8E-28 3.9E-33 250.6 36.9 279 169-452 24-332 (493)
48 KOG0310 Conserved WD40 repeat- 100.0 2.2E-29 4.8E-34 240.5 26.3 276 169-454 28-312 (487)
49 KOG0276 Vesicle coat complex C 100.0 1.2E-29 2.6E-34 248.0 24.1 245 206-455 11-261 (794)
50 KOG0293 WD40 repeat-containing 100.0 2.8E-29 6E-34 234.9 25.0 301 140-453 201-515 (519)
51 KOG0283 WD40 repeat-containing 100.0 1.6E-29 3.4E-34 256.2 24.2 242 206-455 265-580 (712)
52 KOG0275 Conserved WD40 repeat- 100.0 2.4E-30 5.3E-35 235.1 16.4 280 164-449 210-507 (508)
53 PLN00181 protein SPA1-RELATED; 100.0 2.7E-28 5.9E-33 267.0 35.4 260 186-453 457-740 (793)
54 KOG0292 Vesicle coat complex C 100.0 6.8E-29 1.5E-33 250.8 27.7 277 169-453 11-323 (1202)
55 KOG0643 Translation initiation 100.0 6.1E-28 1.3E-32 214.6 26.9 282 167-453 10-319 (327)
56 KOG0288 WD40 repeat protein Ti 100.0 1.4E-29 3.1E-34 237.0 17.4 286 150-449 162-459 (459)
57 KOG0645 WD40 repeat protein [G 100.0 3.4E-27 7.4E-32 210.3 30.3 237 206-454 12-264 (312)
58 KOG0294 WD40 repeat-containing 100.0 2.2E-27 4.8E-32 215.6 27.1 266 180-456 4-286 (362)
59 KOG0306 WD40-repeat-containing 100.0 2E-27 4.4E-32 236.9 29.1 274 168-452 66-485 (888)
60 KOG0277 Peroxisomal targeting 100.0 1.6E-28 3.5E-33 216.8 18.6 234 170-408 63-308 (311)
61 KOG1407 WD40 repeat protein [F 100.0 7.4E-28 1.6E-32 213.4 21.8 255 206-468 18-278 (313)
62 KOG0292 Vesicle coat complex C 100.0 4.7E-28 1E-32 244.8 22.2 247 207-459 8-288 (1202)
63 KOG0282 mRNA splicing factor [ 100.0 6.2E-29 1.3E-33 237.1 15.0 246 206-458 212-469 (503)
64 KOG1446 Histone H3 (Lys4) meth 100.0 5.7E-26 1.2E-30 207.0 33.0 275 168-453 15-305 (311)
65 KOG0313 Microtubule binding pr 100.0 2.6E-27 5.5E-32 219.9 24.4 240 206-454 103-379 (423)
66 KOG0265 U5 snRNP-specific prot 100.0 9.1E-28 2E-32 216.8 20.8 212 243-458 40-253 (338)
67 KOG0289 mRNA splicing factor [ 100.0 4E-27 8.7E-32 221.8 25.6 275 170-450 222-505 (506)
68 KOG1408 WD40 repeat protein [F 100.0 1.3E-27 2.9E-32 236.5 22.9 270 178-452 393-714 (1080)
69 PTZ00421 coronin; Provisional 100.0 3E-26 6.5E-31 234.2 33.7 243 210-455 22-294 (493)
70 KOG0275 Conserved WD40 repeat- 100.0 9.5E-28 2.1E-32 218.3 18.0 250 201-457 206-473 (508)
71 KOG0310 Conserved WD40 repeat- 100.0 1.9E-27 4E-32 227.3 19.6 244 207-457 25-274 (487)
72 KOG0772 Uncharacterized conser 100.0 1.3E-26 2.8E-31 222.5 25.2 294 148-448 152-484 (641)
73 KOG0973 Histone transcription 100.0 1.2E-26 2.7E-31 240.7 27.1 290 166-457 12-361 (942)
74 KOG1446 Histone H3 (Lys4) meth 100.0 1.4E-25 3E-30 204.5 30.7 247 207-461 13-272 (311)
75 KOG0640 mRNA cleavage stimulat 100.0 7.3E-27 1.6E-31 211.5 21.9 240 206-450 110-425 (430)
76 KOG0264 Nucleosome remodeling 100.0 2.4E-26 5.2E-31 218.3 25.0 253 198-453 114-406 (422)
77 PTZ00420 coronin; Provisional 100.0 2.6E-25 5.5E-30 228.6 34.4 224 226-454 50-296 (568)
78 PTZ00420 coronin; Provisional 100.0 1.7E-25 3.8E-30 229.8 32.9 242 186-433 53-318 (568)
79 KOG0641 WD40 repeat protein [G 99.9 2.7E-24 5.8E-29 187.1 32.9 281 164-451 29-349 (350)
80 KOG0293 WD40 repeat-containing 99.9 2.5E-26 5.5E-31 215.1 21.8 247 206-458 222-477 (519)
81 KOG0296 Angio-associated migra 99.9 1.5E-25 3.2E-30 207.4 24.7 257 206-468 62-333 (399)
82 KOG0274 Cdc4 and related F-box 99.9 9.4E-26 2E-30 231.1 25.7 240 207-461 207-451 (537)
83 KOG0299 U3 snoRNP-associated p 99.9 2.3E-25 5E-30 211.6 26.0 275 168-451 143-456 (479)
84 KOG0639 Transducin-like enhanc 99.9 4.6E-26 9.9E-31 217.9 20.8 277 166-450 418-703 (705)
85 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.3E-24 7.1E-29 207.6 34.3 277 181-467 5-295 (300)
86 KOG0647 mRNA export protein (c 99.9 2.7E-25 5.9E-30 200.9 23.0 243 206-458 25-288 (347)
87 KOG1407 WD40 repeat protein [F 99.9 1.8E-24 4E-29 192.0 27.8 273 169-450 22-310 (313)
88 KOG0300 WD40 repeat-containing 99.9 4E-25 8.6E-30 200.8 24.1 267 178-453 160-478 (481)
89 KOG0269 WD40 repeat-containing 99.9 3.9E-26 8.5E-31 228.6 18.1 281 170-454 42-343 (839)
90 KOG0973 Histone transcription 99.9 3.4E-25 7.5E-30 230.0 25.7 246 208-456 13-317 (942)
91 KOG0288 WD40 repeat protein Ti 99.9 1.9E-26 4.1E-31 216.1 14.5 244 206-458 173-424 (459)
92 KOG0268 Sof1-like rRNA process 99.9 2E-26 4.3E-31 212.7 14.1 241 206-455 64-306 (433)
93 KOG0305 Anaphase promoting com 99.9 3.1E-25 6.8E-30 219.6 23.6 238 167-411 217-463 (484)
94 KOG0301 Phospholipase A2-activ 99.9 8.2E-25 1.8E-29 216.9 25.9 272 170-456 17-293 (745)
95 KOG0646 WD40 repeat protein [G 99.9 1.4E-24 3E-29 206.7 25.1 266 187-458 18-314 (476)
96 KOG0268 Sof1-like rRNA process 99.9 8.8E-26 1.9E-30 208.5 16.5 273 170-456 69-350 (433)
97 KOG1539 WD repeat protein [Gen 99.9 4.3E-24 9.3E-29 215.6 29.4 289 164-459 157-614 (910)
98 KOG1036 Mitotic spindle checkp 99.9 2.8E-24 6.1E-29 195.1 24.4 243 206-459 11-270 (323)
99 KOG0647 mRNA export protein (c 99.9 3.7E-24 8E-29 193.7 24.4 273 156-439 17-311 (347)
100 KOG0308 Conserved WD40 repeat- 99.9 5.2E-25 1.1E-29 216.8 19.5 271 178-454 37-330 (735)
101 KOG2106 Uncharacterized conser 99.9 6.7E-23 1.5E-27 196.6 33.4 270 169-448 202-518 (626)
102 KOG0264 Nucleosome remodeling 99.9 1.7E-24 3.7E-29 205.7 21.5 243 164-409 121-404 (422)
103 KOG0308 Conserved WD40 repeat- 99.9 4.5E-25 9.8E-30 217.2 18.0 237 214-455 30-289 (735)
104 KOG1274 WD40 repeat protein [G 99.9 7.6E-24 1.6E-28 216.0 27.3 241 206-452 11-263 (933)
105 KOG1036 Mitotic spindle checkp 99.9 6.5E-23 1.4E-27 186.3 28.9 260 169-441 15-294 (323)
106 KOG0641 WD40 repeat protein [G 99.9 1.5E-22 3.3E-27 176.1 29.9 246 202-454 26-306 (350)
107 KOG0643 Translation initiation 99.9 5.3E-23 1.1E-27 183.2 25.5 230 206-443 8-253 (327)
108 KOG0278 Serine/threonine kinas 99.9 1.2E-24 2.5E-29 192.0 14.2 245 205-458 11-261 (334)
109 KOG1332 Vesicle coat complex C 99.9 1.6E-23 3.4E-28 184.4 19.5 233 173-409 19-286 (299)
110 KOG1274 WD40 repeat protein [G 99.9 7.6E-23 1.7E-27 208.8 27.4 266 170-448 16-297 (933)
111 KOG4283 Transcription-coupled 99.9 1.4E-22 3.1E-27 182.7 26.0 278 169-455 45-369 (397)
112 KOG0321 WD40 repeat-containing 99.9 3.8E-23 8.3E-28 203.3 24.1 274 178-456 64-396 (720)
113 KOG0289 mRNA splicing factor [ 99.9 5.9E-23 1.3E-27 193.8 24.4 236 208-449 219-460 (506)
114 KOG0299 U3 snoRNP-associated p 99.9 3.4E-23 7.4E-28 196.9 22.9 243 206-455 140-414 (479)
115 KOG0270 WD40 repeat-containing 99.9 5E-23 1.1E-27 195.0 23.2 275 178-456 137-454 (463)
116 KOG1332 Vesicle coat complex C 99.9 1.6E-23 3.5E-28 184.3 18.4 248 202-453 5-288 (299)
117 KOG0283 WD40 repeat-containing 99.9 4.1E-23 9E-28 209.7 24.0 235 166-410 266-577 (712)
118 KOG0269 WD40 repeat-containing 99.9 4.7E-24 1E-28 213.8 15.9 239 169-410 89-341 (839)
119 KOG4378 Nuclear protein COP1 [ 99.9 4.4E-23 9.6E-28 197.3 21.1 262 170-438 37-309 (673)
120 KOG2096 WD40 repeat protein [G 99.9 2.6E-22 5.5E-27 182.8 24.8 240 206-454 84-405 (420)
121 KOG1273 WD40 repeat protein [G 99.9 2.1E-22 4.6E-27 183.1 23.8 278 170-454 26-325 (405)
122 KOG0301 Phospholipase A2-activ 99.9 1.1E-22 2.3E-27 202.0 21.7 231 206-451 12-249 (745)
123 KOG0772 Uncharacterized conser 99.9 1.1E-22 2.4E-27 195.5 20.6 249 156-410 206-488 (641)
124 KOG2048 WD40 repeat protein [G 99.9 2.7E-21 6E-26 191.7 30.1 274 170-452 28-320 (691)
125 KOG0639 Transducin-like enhanc 99.9 6E-23 1.3E-27 196.6 16.5 254 204-464 415-676 (705)
126 KOG0267 Microtubule severing p 99.9 6.9E-24 1.5E-28 211.1 9.5 226 168-400 29-259 (825)
127 KOG0646 WD40 repeat protein [G 99.9 2.9E-22 6.3E-27 191.0 19.5 258 187-451 61-350 (476)
128 KOG0267 Microtubule severing p 99.9 1.6E-23 3.6E-28 208.4 11.0 244 187-443 14-260 (825)
129 KOG0300 WD40 repeat-containing 99.9 6.9E-22 1.5E-26 179.8 20.5 243 206-455 146-432 (481)
130 KOG0270 WD40 repeat-containing 99.9 4.1E-22 8.8E-27 188.9 19.7 233 178-414 192-454 (463)
131 KOG2055 WD40 repeat protein [G 99.9 2E-21 4.4E-26 184.8 23.7 278 168-451 214-512 (514)
132 KOG2445 Nuclear pore complex c 99.9 6.1E-21 1.3E-25 173.3 25.5 245 203-452 8-319 (361)
133 KOG4328 WD40 protein [Function 99.9 1.4E-21 3.1E-26 185.7 22.3 279 167-451 186-495 (498)
134 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.4E-20 9.5E-25 178.7 33.2 253 170-431 33-300 (300)
135 KOG0294 WD40 repeat-containing 99.9 1.9E-21 4.1E-26 177.1 21.8 224 223-455 4-241 (362)
136 KOG4283 Transcription-coupled 99.9 8.5E-22 1.8E-26 177.7 19.3 217 206-457 41-282 (397)
137 KOG2106 Uncharacterized conser 99.9 5.5E-20 1.2E-24 176.7 31.2 278 166-455 153-481 (626)
138 KOG0640 mRNA cleavage stimulat 99.9 1.1E-21 2.4E-26 178.1 17.2 234 170-408 175-425 (430)
139 KOG4378 Nuclear protein COP1 [ 99.9 3.6E-21 7.9E-26 184.3 21.5 269 178-454 3-283 (673)
140 KOG0302 Ribosome Assembly prot 99.9 4.9E-21 1.1E-25 178.1 21.6 215 179-395 165-426 (440)
141 KOG1034 Transcriptional repres 99.9 6.8E-21 1.5E-25 174.4 22.1 266 178-451 55-383 (385)
142 KOG1408 WD40 repeat protein [F 99.9 1.5E-20 3.3E-25 186.8 25.9 283 170-458 327-678 (1080)
143 KOG0302 Ribosome Assembly prot 99.9 8.6E-21 1.9E-25 176.5 19.0 204 248-455 149-382 (440)
144 KOG0307 Vesicle coat complex C 99.9 1.1E-21 2.5E-26 204.8 14.4 244 164-412 61-330 (1049)
145 KOG2048 WD40 repeat protein [G 99.9 2E-19 4.4E-24 178.5 28.9 241 208-455 25-279 (691)
146 KOG0307 Vesicle coat complex C 99.9 2.2E-21 4.8E-26 202.7 15.3 250 206-456 62-332 (1049)
147 KOG1538 Uncharacterized conser 99.9 4.9E-20 1.1E-24 182.0 23.4 272 169-454 14-296 (1081)
148 KOG1063 RNA polymerase II elon 99.9 2.9E-19 6.4E-24 177.6 28.4 276 170-451 17-391 (764)
149 KOG0650 WD40 repeat nucleolar 99.9 6.3E-20 1.4E-24 179.6 21.4 237 205-449 397-678 (733)
150 KOG1539 WD repeat protein [Gen 99.8 7.9E-18 1.7E-22 170.7 34.7 289 154-455 25-322 (910)
151 KOG1587 Cytoplasmic dynein int 99.8 4.1E-19 8.8E-24 181.1 25.8 267 187-458 222-523 (555)
152 KOG1445 Tumor-specific antigen 99.8 2.3E-19 5E-24 176.4 22.9 131 150-281 108-251 (1012)
153 KOG0650 WD40 repeat nucleolar 99.8 6E-19 1.3E-23 172.8 24.6 270 169-448 402-732 (733)
154 KOG1063 RNA polymerase II elon 99.8 6.7E-19 1.4E-23 175.1 25.1 291 161-454 261-651 (764)
155 KOG0303 Actin-binding protein 99.8 4.5E-19 9.8E-24 165.9 22.6 244 166-413 26-298 (472)
156 KOG0290 Conserved WD40 repeat- 99.8 1.9E-18 4E-23 156.0 25.4 278 164-447 41-361 (364)
157 KOG4328 WD40 protein [Function 99.8 4E-19 8.6E-24 169.2 21.8 243 207-454 185-453 (498)
158 KOG1188 WD40 repeat protein [G 99.8 3.4E-19 7.4E-24 164.1 20.5 269 179-452 41-347 (376)
159 COG2319 FOG: WD40 repeat [Gene 99.8 9.3E-17 2E-21 160.5 38.3 281 167-454 65-362 (466)
160 KOG1009 Chromatin assembly com 99.8 4.5E-19 9.8E-24 166.6 19.7 247 207-456 12-377 (434)
161 COG2319 FOG: WD40 repeat [Gene 99.8 1.1E-16 2.3E-21 160.0 38.3 279 168-452 156-443 (466)
162 KOG2055 WD40 repeat protein [G 99.8 9.8E-19 2.1E-23 166.7 20.7 244 208-457 213-473 (514)
163 KOG2919 Guanine nucleotide-bin 99.8 4.6E-18 9.9E-23 155.6 23.6 269 169-442 51-361 (406)
164 PRK11028 6-phosphogluconolacto 99.8 2.6E-17 5.7E-22 162.4 30.9 268 181-453 6-306 (330)
165 KOG0321 WD40 repeat-containing 99.8 1.2E-18 2.6E-23 171.9 19.6 239 212-455 53-351 (720)
166 KOG0322 G-protein beta subunit 99.8 1.6E-18 3.4E-23 154.6 16.7 287 152-451 3-323 (323)
167 KOG1273 WD40 repeat protein [G 99.8 4.2E-18 9E-23 155.4 19.7 194 253-452 26-227 (405)
168 KOG0642 Cell-cycle nuclear pro 99.8 7.9E-19 1.7E-23 171.2 15.6 248 206-458 292-568 (577)
169 KOG0303 Actin-binding protein 99.8 8.7E-18 1.9E-22 157.4 21.8 203 245-454 76-297 (472)
170 KOG2919 Guanine nucleotide-bin 99.8 1.2E-17 2.6E-22 152.9 21.8 239 209-452 50-328 (406)
171 KOG2445 Nuclear pore complex c 99.8 2E-17 4.2E-22 150.6 22.4 203 247-454 10-259 (361)
172 KOG0649 WD40 repeat protein [G 99.8 5.1E-17 1.1E-21 143.4 24.0 238 210-457 12-280 (325)
173 KOG0290 Conserved WD40 repeat- 99.8 9.7E-18 2.1E-22 151.4 19.8 234 160-395 89-354 (364)
174 KOG1524 WD40 repeat-containing 99.8 8.7E-18 1.9E-22 162.7 20.5 258 171-450 18-285 (737)
175 KOG2096 WD40 repeat protein [G 99.8 8.8E-18 1.9E-22 153.4 19.0 205 244-454 80-311 (420)
176 KOG1007 WD repeat protein TSSC 99.8 6.7E-17 1.4E-21 145.9 20.7 265 186-455 39-365 (370)
177 KOG1517 Guanine nucleotide bin 99.8 2.4E-16 5.2E-21 163.4 26.7 278 171-454 1068-1384(1387)
178 KOG4227 WD40 repeat protein [G 99.8 1.2E-16 2.7E-21 149.4 22.0 243 206-454 54-390 (609)
179 KOG2110 Uncharacterized conser 99.8 5.8E-15 1.3E-19 137.8 32.9 273 170-453 8-332 (391)
180 KOG1587 Cytoplasmic dynein int 99.8 9.9E-17 2.2E-21 163.7 23.1 249 153-410 233-517 (555)
181 KOG1007 WD repeat protein TSSC 99.8 3.9E-17 8.4E-22 147.4 17.7 195 169-366 125-361 (370)
182 KOG2110 Uncharacterized conser 99.8 1.8E-15 3.8E-20 141.2 28.6 238 208-454 5-251 (391)
183 KOG1188 WD40 repeat protein [G 99.7 1.1E-16 2.4E-21 147.7 19.4 228 221-452 41-298 (376)
184 KOG1034 Transcriptional repres 99.7 7.5E-17 1.6E-21 148.0 18.2 243 205-456 35-342 (385)
185 KOG0644 Uncharacterized conser 99.7 1.9E-17 4E-22 167.7 12.3 279 170-460 193-477 (1113)
186 PRK01742 tolB translocation pr 99.7 7.3E-16 1.6E-20 157.3 23.4 229 187-432 184-426 (429)
187 KOG0649 WD40 repeat protein [G 99.7 1.4E-14 3.1E-19 128.1 26.5 263 172-449 15-314 (325)
188 KOG1445 Tumor-specific antigen 99.7 1.2E-16 2.6E-21 157.5 14.7 225 184-410 600-845 (1012)
189 KOG0642 Cell-cycle nuclear pro 99.7 3.5E-16 7.5E-21 152.9 16.5 249 169-422 296-574 (577)
190 KOG1963 WD40 repeat protein [G 99.7 2E-14 4.3E-19 147.4 29.1 274 171-453 164-540 (792)
191 KOG1310 WD40 repeat protein [G 99.7 3.4E-16 7.3E-21 152.2 15.3 208 206-417 48-311 (758)
192 KOG1009 Chromatin assembly com 99.7 2.6E-15 5.6E-20 141.5 19.7 238 170-413 16-376 (434)
193 PRK03629 tolB translocation pr 99.7 3.7E-14 8.1E-19 144.5 29.5 236 188-431 180-427 (429)
194 KOG2139 WD40 repeat protein [G 99.7 3.2E-14 6.9E-19 132.4 25.2 275 169-451 100-431 (445)
195 KOG1538 Uncharacterized conser 99.7 1.9E-15 4.1E-20 149.9 18.0 246 209-468 13-269 (1081)
196 KOG1523 Actin-related protein 99.7 6.2E-15 1.3E-19 135.2 19.9 221 208-433 10-261 (361)
197 KOG1524 WD40 repeat-containing 99.7 1.2E-15 2.6E-20 148.1 15.2 205 178-406 76-283 (737)
198 KOG2111 Uncharacterized conser 99.7 3.2E-13 7E-18 124.0 30.1 274 172-453 10-324 (346)
199 KOG1963 WD40 repeat protein [G 99.7 6.5E-14 1.4E-18 143.7 28.4 280 171-457 20-381 (792)
200 KOG0644 Uncharacterized conser 99.7 1.7E-16 3.7E-21 160.8 9.5 238 206-459 188-434 (1113)
201 PRK11028 6-phosphogluconolacto 99.7 1.5E-13 3.2E-18 135.7 29.5 235 170-409 37-304 (330)
202 PRK04922 tolB translocation pr 99.7 4.4E-14 9.6E-19 144.4 26.6 236 188-431 185-432 (433)
203 KOG2111 Uncharacterized conser 99.7 2.1E-13 4.6E-18 125.2 27.5 241 210-458 7-263 (346)
204 KOG0771 Prolactin regulatory e 99.7 2.8E-14 6.2E-19 135.4 22.4 198 254-456 148-359 (398)
205 KOG1240 Protein kinase contain 99.6 3.8E-14 8.3E-19 149.4 24.7 293 155-449 1036-1431(1431)
206 PRK05137 tolB translocation pr 99.6 2.2E-13 4.8E-18 139.4 29.6 235 188-431 183-432 (435)
207 PRK01742 tolB translocation pr 99.6 2.1E-14 4.6E-19 146.5 21.7 209 229-451 183-401 (429)
208 KOG2139 WD40 repeat protein [G 99.6 5.9E-14 1.3E-18 130.7 20.7 238 208-454 98-386 (445)
209 PRK02889 tolB translocation pr 99.6 2.7E-13 5.8E-18 138.3 27.2 239 187-432 176-425 (427)
210 KOG1517 Guanine nucleotide bin 99.6 5.2E-14 1.1E-18 146.4 21.8 227 178-411 1124-1383(1387)
211 KOG1334 WD40 repeat protein [G 99.6 7.5E-15 1.6E-19 141.3 14.6 282 168-454 143-469 (559)
212 PF08662 eIF2A: Eukaryotic tra 99.6 9.4E-14 2E-18 125.6 20.9 155 294-453 8-181 (194)
213 KOG1310 WD40 repeat protein [G 99.6 8.3E-15 1.8E-19 142.7 14.7 211 242-455 42-307 (758)
214 KOG4497 Uncharacterized conser 99.6 8.1E-14 1.8E-18 128.2 19.7 274 172-454 13-394 (447)
215 KOG1240 Protein kinase contain 99.6 1.7E-13 3.7E-18 144.7 24.0 259 192-456 1034-1339(1431)
216 KOG2394 WD40 protein DMR-N9 [G 99.6 6.9E-14 1.5E-18 136.2 19.2 260 178-457 135-458 (636)
217 PRK05137 tolB translocation pr 99.6 1E-12 2.3E-17 134.5 28.7 219 231-455 183-416 (435)
218 PF02239 Cytochrom_D1: Cytochr 99.6 2E-12 4.3E-17 128.4 29.4 284 172-458 41-354 (369)
219 KOG1272 WD40-repeat-containing 99.6 6E-15 1.3E-19 141.2 10.0 263 168-443 130-401 (545)
220 PF10282 Lactonase: Lactonase, 99.6 2.7E-11 5.8E-16 120.1 35.9 264 187-453 13-324 (345)
221 PRK04922 tolB translocation pr 99.6 1.5E-12 3.2E-17 133.2 26.8 218 230-455 184-415 (433)
222 KOG2315 Predicted translation 99.6 2.7E-12 5.9E-17 126.0 26.7 278 170-454 37-393 (566)
223 PF08662 eIF2A: Eukaryotic tra 99.6 6.1E-13 1.3E-17 120.3 20.8 142 271-417 38-186 (194)
224 KOG1523 Actin-related protein 99.6 3.4E-13 7.4E-18 123.9 18.9 202 248-454 8-239 (361)
225 KOG3881 Uncharacterized conser 99.6 4E-13 8.6E-18 126.5 19.7 217 172-391 110-345 (412)
226 KOG2321 WD40 repeat protein [G 99.5 1.3E-12 2.8E-17 128.3 22.8 241 204-452 47-344 (703)
227 PRK03629 tolB translocation pr 99.5 8.9E-12 1.9E-16 127.1 30.2 220 231-458 180-413 (429)
228 KOG1272 WD40-repeat-containing 99.5 2.9E-14 6.2E-19 136.6 10.9 231 209-451 130-362 (545)
229 KOG1334 WD40 repeat protein [G 99.5 7.7E-14 1.7E-18 134.4 13.5 249 206-458 140-431 (559)
230 PF02239 Cytochrom_D1: Cytochr 99.5 1.1E-11 2.4E-16 123.2 28.8 270 177-454 4-305 (369)
231 TIGR02800 propeller_TolB tol-p 99.5 7.9E-12 1.7E-16 127.4 28.3 234 188-429 171-416 (417)
232 PRK00178 tolB translocation pr 99.5 2.3E-11 4.9E-16 124.6 29.1 236 188-431 180-427 (430)
233 KOG3881 Uncharacterized conser 99.5 3.4E-12 7.4E-17 120.2 20.4 243 206-453 53-322 (412)
234 PRK04792 tolB translocation pr 99.5 2.3E-11 5E-16 124.6 28.6 233 188-431 199-446 (448)
235 PRK02889 tolB translocation pr 99.5 1.6E-11 3.4E-16 125.3 27.0 215 230-452 176-404 (427)
236 KOG1354 Serine/threonine prote 99.5 6.2E-12 1.3E-16 116.6 20.8 246 206-457 23-365 (433)
237 KOG0322 G-protein beta subunit 99.5 3.2E-13 6.9E-18 121.0 11.9 157 206-365 148-322 (323)
238 KOG0771 Prolactin regulatory e 99.5 8.2E-13 1.8E-17 125.6 15.0 191 212-409 148-354 (398)
239 KOG1409 Uncharacterized conser 99.5 5.3E-12 1.2E-16 117.1 19.0 269 178-452 37-395 (404)
240 KOG4227 WD40 repeat protein [G 99.5 1.3E-11 2.9E-16 116.0 21.8 234 168-408 57-386 (609)
241 KOG0309 Conserved WD40 repeat- 99.5 1E-12 2.2E-17 132.3 14.7 285 167-453 24-341 (1081)
242 KOG2394 WD40 protein DMR-N9 [G 99.5 3.5E-12 7.5E-17 124.5 17.5 189 179-387 187-384 (636)
243 KOG4497 Uncharacterized conser 99.4 1.1E-10 2.3E-15 107.9 25.0 268 170-445 51-426 (447)
244 TIGR02800 propeller_TolB tol-p 99.4 1.6E-10 3.5E-15 117.8 28.8 217 231-453 171-399 (417)
245 PRK01029 tolB translocation pr 99.4 2.6E-10 5.6E-15 116.1 28.9 242 188-433 166-426 (428)
246 TIGR02658 TTQ_MADH_Hv methylam 99.4 3.3E-09 7.2E-14 103.4 35.0 261 187-459 27-338 (352)
247 COG5354 Uncharacterized protei 99.4 1.2E-10 2.6E-15 113.4 24.4 279 167-453 32-350 (561)
248 PRK00178 tolB translocation pr 99.4 3.8E-10 8.3E-15 115.5 29.9 218 231-455 180-410 (430)
249 KOG0280 Uncharacterized conser 99.4 9.3E-11 2E-15 106.9 21.3 264 187-453 46-335 (339)
250 KOG4547 WD40 repeat-containing 99.4 1E-10 2.2E-15 115.9 23.2 182 181-367 9-221 (541)
251 KOG2321 WD40 repeat protein [G 99.4 5.1E-11 1.1E-15 117.3 20.6 185 223-413 148-347 (703)
252 COG4946 Uncharacterized protei 99.4 2.5E-09 5.4E-14 103.4 29.8 274 178-458 278-661 (668)
253 KOG2314 Translation initiation 99.3 8.3E-10 1.8E-14 108.5 25.3 279 169-452 251-574 (698)
254 PRK01029 tolB translocation pr 99.3 5.5E-10 1.2E-14 113.7 25.4 215 172-389 189-426 (428)
255 PRK04792 tolB translocation pr 99.3 1.5E-09 3.2E-14 111.3 28.4 217 231-454 199-428 (448)
256 KOG0974 WD-repeat protein WDR6 99.3 8.6E-11 1.9E-15 123.1 19.3 260 179-454 18-291 (967)
257 KOG2041 WD40 repeat protein [G 99.3 1.9E-10 4.1E-15 115.8 20.7 281 164-453 11-339 (1189)
258 KOG4547 WD40 repeat-containing 99.3 1.3E-10 2.7E-15 115.3 19.0 216 218-461 3-230 (541)
259 TIGR02658 TTQ_MADH_Hv methylam 99.3 6E-09 1.3E-13 101.7 30.2 230 185-417 75-338 (352)
260 KOG2315 Predicted translation 99.3 5.5E-10 1.2E-14 110.0 22.4 250 172-431 130-410 (566)
261 COG2706 3-carboxymuconate cycl 99.3 2E-08 4.4E-13 94.7 31.6 265 186-454 15-324 (346)
262 KOG1912 WD40 repeat protein [G 99.3 5E-10 1.1E-14 113.8 20.7 280 170-456 18-369 (1062)
263 TIGR03300 assembly_YfgL outer 99.3 7.4E-09 1.6E-13 104.1 29.4 267 177-459 65-346 (377)
264 PF10282 Lactonase: Lactonase, 99.3 4E-08 8.6E-13 97.5 33.7 256 171-429 40-345 (345)
265 TIGR03300 assembly_YfgL outer 99.3 4.7E-09 1E-13 105.6 27.1 254 177-448 105-376 (377)
266 KOG1064 RAVE (regulator of V-A 99.2 4.2E-11 9.1E-16 130.8 12.5 192 171-376 2212-2408(2439)
267 KOG0974 WD-repeat protein WDR6 99.2 2.1E-10 4.5E-15 120.2 17.2 186 174-367 96-289 (967)
268 COG5354 Uncharacterized protei 99.2 1.2E-08 2.6E-13 99.7 26.7 261 187-456 108-400 (561)
269 KOG0280 Uncharacterized conser 99.2 1E-09 2.2E-14 100.2 17.8 221 183-408 91-332 (339)
270 KOG2314 Translation initiation 99.2 7E-09 1.5E-13 102.1 24.3 278 168-452 211-526 (698)
271 PLN02919 haloacid dehalogenase 99.2 3.2E-08 6.9E-13 110.8 31.7 236 212-455 571-892 (1057)
272 KOG2041 WD40 repeat protein [G 99.1 1.4E-09 3.1E-14 109.6 16.4 241 205-452 11-298 (1189)
273 KOG1064 RAVE (regulator of V-A 99.1 3.8E-10 8.3E-15 123.6 12.6 198 249-462 2207-2409(2439)
274 KOG1354 Serine/threonine prote 99.1 1.1E-08 2.5E-13 95.3 20.3 273 169-448 27-431 (433)
275 PF04762 IKI3: IKI3 family; I 99.1 1.8E-07 3.9E-12 103.1 31.3 274 170-454 78-459 (928)
276 PF15492 Nbas_N: Neuroblastoma 99.1 4.3E-07 9.3E-12 83.5 27.3 230 177-420 8-270 (282)
277 KOG1912 WD40 repeat protein [G 99.0 4.1E-08 8.8E-13 100.2 22.0 237 210-454 17-307 (1062)
278 PF13360 PQQ_2: PQQ-like domai 99.0 3.6E-07 7.8E-12 85.4 27.4 220 186-415 2-236 (238)
279 COG4946 Uncharacterized protei 99.0 2.6E-07 5.6E-12 89.7 25.6 173 173-351 327-506 (668)
280 PRK04043 tolB translocation pr 99.0 5.1E-07 1.1E-11 91.6 29.2 213 187-409 169-400 (419)
281 PLN02919 haloacid dehalogenase 99.0 5.2E-07 1.1E-11 101.3 31.8 234 171-413 571-892 (1057)
282 PF08450 SGL: SMP-30/Gluconola 99.0 1.3E-06 2.9E-11 82.3 30.0 216 213-439 4-243 (246)
283 PRK04043 tolB translocation pr 99.0 8E-07 1.7E-11 90.1 30.1 216 231-455 170-404 (419)
284 KOG4532 WD40-like repeat conta 99.0 2.9E-07 6.2E-12 83.4 22.2 251 187-454 52-334 (344)
285 COG2706 3-carboxymuconate cycl 99.0 1.1E-06 2.5E-11 83.0 27.2 223 229-454 15-277 (346)
286 PRK11138 outer membrane biogen 99.0 2.8E-07 6.1E-12 93.2 25.3 267 177-458 69-360 (394)
287 KOG3914 WD repeat protein WDR4 99.0 1.4E-08 3E-13 96.7 14.3 159 211-376 65-233 (390)
288 KOG4190 Uncharacterized conser 98.9 1.8E-09 4E-14 105.9 8.1 207 242-454 727-951 (1034)
289 PRK11138 outer membrane biogen 98.9 4.2E-07 9.2E-12 91.9 25.7 257 177-450 120-393 (394)
290 KOG3914 WD repeat protein WDR4 98.9 2E-08 4.3E-13 95.7 14.5 160 295-458 66-230 (390)
291 COG5170 CDC55 Serine/threonine 98.9 2.1E-08 4.6E-13 92.3 14.0 241 206-452 24-368 (460)
292 KOG4190 Uncharacterized conser 98.9 6.6E-09 1.4E-13 102.1 10.9 242 200-449 726-986 (1034)
293 KOG1645 RING-finger-containing 98.9 9E-08 2E-12 91.2 16.8 254 189-451 175-461 (463)
294 KOG4532 WD40-like repeat conta 98.9 3.7E-07 8.1E-12 82.7 19.5 212 179-394 85-319 (344)
295 PF13360 PQQ_2: PQQ-like domai 98.8 1.5E-06 3.3E-11 81.2 23.8 215 229-455 2-234 (238)
296 PF04762 IKI3: IKI3 family; I 98.8 7E-06 1.5E-10 90.7 32.2 239 209-453 210-521 (928)
297 PF08450 SGL: SMP-30/Gluconola 98.8 1.2E-05 2.7E-10 75.6 29.9 212 172-396 4-244 (246)
298 KOG1832 HIV-1 Vpr-binding prot 98.8 2E-09 4.3E-14 110.9 4.1 194 206-418 1099-1300(1516)
299 KOG1409 Uncharacterized conser 98.8 1.9E-07 4.1E-12 87.3 15.3 208 241-455 15-231 (404)
300 KOG1920 IkappaB kinase complex 98.8 2.2E-06 4.8E-11 92.1 25.1 274 169-451 70-365 (1265)
301 KOG0309 Conserved WD40 repeat- 98.8 6.3E-08 1.4E-12 98.4 12.4 237 170-410 70-340 (1081)
302 KOG1275 PAB-dependent poly(A) 98.8 1.9E-07 4.2E-12 97.1 15.6 182 219-408 146-341 (1118)
303 KOG1275 PAB-dependent poly(A) 98.7 3.7E-07 8E-12 95.0 17.0 190 259-454 146-345 (1118)
304 KOG4714 Nucleoporin [Nuclear s 98.7 3.6E-07 7.9E-12 82.4 14.0 231 211-449 39-316 (319)
305 PF15492 Nbas_N: Neuroblastoma 98.7 5E-05 1.1E-09 70.1 27.6 233 214-459 3-267 (282)
306 KOG2695 WD40 repeat protein [G 98.7 4.3E-08 9.2E-13 91.6 7.3 155 174-332 218-387 (425)
307 cd00216 PQQ_DH Dehydrogenases 98.7 1.4E-05 2.9E-10 83.2 26.5 275 178-461 62-434 (488)
308 KOG4714 Nucleoporin [Nuclear s 98.7 4.2E-07 9.1E-12 82.1 12.4 144 178-322 102-255 (319)
309 PF00400 WD40: WD domain, G-be 98.6 1.3E-07 2.9E-12 61.3 5.9 39 411-449 1-39 (39)
310 PF07433 DUF1513: Protein of u 98.6 0.0001 2.2E-09 70.0 27.3 215 173-394 10-273 (305)
311 KOG2695 WD40 repeat protein [G 98.6 1.8E-07 3.9E-12 87.5 8.7 158 215-378 218-388 (425)
312 KOG2114 Vacuolar assembly/sort 98.6 2E-05 4.3E-10 82.2 24.1 205 215-426 30-261 (933)
313 KOG0882 Cyclophilin-related pe 98.6 1.6E-06 3.4E-11 83.9 15.0 234 177-417 20-313 (558)
314 COG5170 CDC55 Serine/threonine 98.6 1.3E-06 2.9E-11 80.7 13.3 199 250-454 26-312 (460)
315 KOG2066 Vacuolar assembly/sort 98.5 3.6E-06 7.8E-11 86.9 17.0 181 208-409 39-233 (846)
316 KOG0882 Cyclophilin-related pe 98.5 5.3E-07 1.2E-11 87.1 10.0 209 249-461 8-241 (558)
317 PF07433 DUF1513: Protein of u 98.5 0.00034 7.4E-09 66.5 28.6 230 209-445 5-279 (305)
318 PRK02888 nitrous-oxide reducta 98.5 5.3E-05 1.1E-09 78.2 23.1 151 299-452 200-405 (635)
319 PRK02888 nitrous-oxide reducta 98.4 9.3E-05 2E-09 76.5 24.7 261 178-451 141-461 (635)
320 KOG3617 WD40 and TPR repeat-co 98.4 4.4E-06 9.5E-11 86.5 14.7 269 167-453 15-335 (1416)
321 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00027 5.8E-09 70.4 27.1 250 185-439 21-345 (353)
322 PF00400 WD40: WD domain, G-be 98.4 1E-06 2.2E-11 57.1 6.4 37 283-319 3-39 (39)
323 KOG1008 Uncharacterized conser 98.4 7.3E-08 1.6E-12 96.7 1.3 200 164-367 53-276 (783)
324 KOG3621 WD40 repeat-containing 98.4 4.4E-05 9.6E-10 78.1 20.6 274 168-455 36-357 (726)
325 PF06433 Me-amine-dh_H: Methyl 98.4 0.00022 4.8E-09 68.5 24.3 232 187-419 67-330 (342)
326 PF08596 Lgl_C: Lethal giant l 98.4 0.00012 2.7E-09 73.2 23.8 240 210-455 3-339 (395)
327 PF06433 Me-amine-dh_H: Methyl 98.4 0.00034 7.4E-09 67.2 25.1 262 187-460 17-329 (342)
328 KOG2066 Vacuolar assembly/sort 98.4 1.6E-05 3.5E-10 82.3 16.9 182 250-451 39-233 (846)
329 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.0014 3E-08 59.9 26.9 119 179-301 24-145 (354)
330 PF11768 DUF3312: Protein of u 98.4 0.0011 2.5E-08 67.1 29.2 118 335-456 207-334 (545)
331 COG3391 Uncharacterized conser 98.3 0.0028 6.1E-08 63.7 31.5 261 189-456 13-288 (381)
332 cd00216 PQQ_DH Dehydrogenases 98.3 0.00086 1.9E-08 69.8 28.2 232 178-419 111-434 (488)
333 PF04841 Vps16_N: Vps16, N-ter 98.3 0.0019 4E-08 65.6 29.0 197 188-394 62-276 (410)
334 PF06977 SdiA-regulated: SdiA- 98.3 0.0011 2.5E-08 61.8 25.1 194 206-406 19-247 (248)
335 PF14583 Pectate_lyase22: Olig 98.2 0.0032 7E-08 61.8 28.0 278 168-451 36-381 (386)
336 COG0823 TolB Periplasmic compo 98.2 0.0002 4.3E-09 72.5 20.3 204 188-399 174-391 (425)
337 KOG1008 Uncharacterized conser 98.2 1.9E-06 4.2E-11 86.8 5.3 241 208-452 56-336 (783)
338 KOG2114 Vacuolar assembly/sort 98.2 0.00048 1E-08 72.2 22.5 201 169-375 27-252 (933)
339 PF03178 CPSF_A: CPSF A subuni 98.1 0.001 2.2E-08 65.3 23.7 212 187-406 2-262 (321)
340 KOG1645 RING-finger-containing 98.1 0.00023 5.1E-09 68.4 17.7 234 168-410 194-462 (463)
341 PF04053 Coatomer_WDAD: Coatom 98.1 0.00045 9.7E-09 70.2 21.0 218 208-452 32-263 (443)
342 KOG1920 IkappaB kinase complex 98.1 0.0006 1.3E-08 74.0 22.5 203 249-454 67-325 (1265)
343 PF04053 Coatomer_WDAD: Coatom 98.1 0.00069 1.5E-08 68.9 22.2 220 166-409 31-262 (443)
344 PF00780 CNH: CNH domain; Int 98.1 0.0082 1.8E-07 57.4 28.0 224 178-421 7-267 (275)
345 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.011 2.4E-07 61.9 30.9 279 178-461 70-500 (527)
346 PF11768 DUF3312: Protein of u 98.1 0.00014 3E-09 73.6 15.6 132 188-322 185-330 (545)
347 KOG1832 HIV-1 Vpr-binding prot 98.0 4.1E-06 8.9E-11 87.1 4.4 162 283-456 1093-1260(1516)
348 KOG3617 WD40 and TPR repeat-co 98.0 0.00016 3.5E-09 75.3 15.7 257 168-438 60-372 (1416)
349 PF02897 Peptidase_S9_N: Proly 98.0 0.015 3.2E-07 59.3 29.8 242 211-455 126-408 (414)
350 COG0823 TolB Periplasmic compo 98.0 0.00067 1.5E-08 68.7 19.0 200 232-440 175-388 (425)
351 PF08553 VID27: VID27 cytoplas 98.0 0.00071 1.5E-08 72.6 19.5 141 221-366 494-647 (794)
352 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.0079 1.7E-07 55.1 22.5 143 220-368 23-167 (354)
353 PF00780 CNH: CNH domain; Int 97.9 0.007 1.5E-07 57.9 24.2 223 218-460 5-264 (275)
354 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.0046 1E-07 61.6 23.6 228 169-397 44-347 (353)
355 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.035 7.5E-07 58.3 28.9 241 177-420 120-501 (527)
356 PF04841 Vps16_N: Vps16, N-ter 97.8 0.024 5.3E-07 57.5 26.8 192 231-433 62-271 (410)
357 COG3391 Uncharacterized conser 97.7 0.061 1.3E-06 54.1 28.6 219 209-431 74-308 (381)
358 PF06977 SdiA-regulated: SdiA- 97.7 0.027 5.8E-07 52.7 23.8 196 245-448 16-247 (248)
359 PF05096 Glu_cyclase_2: Glutam 97.7 0.026 5.7E-07 52.7 22.9 194 155-352 32-249 (264)
360 PF08596 Lgl_C: Lethal giant l 97.7 0.0096 2.1E-07 59.8 21.5 185 208-395 86-324 (395)
361 PF03178 CPSF_A: CPSF A subuni 97.6 0.0062 1.3E-07 59.8 19.2 141 178-321 42-202 (321)
362 COG3386 Gluconolactonase [Carb 97.6 0.039 8.4E-07 53.5 23.2 213 174-397 31-275 (307)
363 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.0071 1.5E-07 48.4 14.5 101 294-405 2-110 (111)
364 COG3386 Gluconolactonase [Carb 97.5 0.064 1.4E-06 51.9 23.5 217 215-441 31-275 (307)
365 smart00320 WD40 WD40 repeats. 97.5 0.00036 7.8E-09 43.3 5.6 38 412-449 3-40 (40)
366 KOG4640 Anaphase-promoting com 97.4 0.00086 1.9E-08 68.2 9.6 92 291-386 20-114 (665)
367 KOG3621 WD40 repeat-containing 97.4 0.0018 4E-08 66.7 11.9 136 290-430 32-179 (726)
368 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.016 3.5E-07 46.4 14.7 99 211-316 2-109 (111)
369 KOG2395 Protein involved in va 97.3 0.0038 8.3E-08 62.4 12.9 142 219-366 344-500 (644)
370 PF02897 Peptidase_S9_N: Proly 97.3 0.2 4.3E-06 51.0 26.3 256 155-413 108-408 (414)
371 PF14655 RAB3GAP2_N: Rab3 GTPa 97.3 0.16 3.5E-06 51.0 24.6 84 332-418 306-407 (415)
372 PHA02713 hypothetical protein; 97.3 0.026 5.6E-07 59.7 19.4 215 188-413 273-537 (557)
373 KOG4499 Ca2+-binding protein R 97.2 0.082 1.8E-06 47.9 19.1 204 220-431 27-263 (310)
374 PRK13616 lipoprotein LpqB; Pro 97.2 0.017 3.7E-07 61.1 17.4 151 292-451 350-525 (591)
375 KOG4441 Proteins containing BT 97.2 0.03 6.6E-07 59.2 19.1 206 187-401 301-533 (571)
376 KOG4640 Anaphase-promoting com 97.2 0.0019 4E-08 65.8 9.2 80 376-458 19-99 (665)
377 KOG3630 Nuclear pore complex, 97.2 0.0045 9.7E-08 67.1 12.3 144 208-353 100-263 (1405)
378 PF08553 VID27: VID27 cytoplas 97.2 0.012 2.7E-07 63.3 15.7 133 186-320 503-646 (794)
379 COG5276 Uncharacterized conser 97.1 0.24 5.2E-06 46.6 27.0 264 174-451 93-369 (370)
380 smart00320 WD40 WD40 repeats. 97.1 0.0013 2.9E-08 40.6 5.0 37 283-319 4-40 (40)
381 PHA02713 hypothetical protein; 97.1 0.067 1.4E-06 56.6 20.1 218 231-457 273-539 (557)
382 COG3204 Uncharacterized protei 97.0 0.18 4E-06 47.4 20.0 160 206-367 83-264 (316)
383 KOG4441 Proteins containing BT 97.0 0.056 1.2E-06 57.2 18.9 231 218-454 283-549 (571)
384 PRK13616 lipoprotein LpqB; Pro 96.9 0.16 3.4E-06 54.0 21.1 202 229-446 328-563 (591)
385 PF07995 GSDH: Glucose / Sorbo 96.8 0.57 1.2E-05 46.1 27.6 230 210-446 3-330 (331)
386 PF14583 Pectate_lyase22: Olig 96.8 0.58 1.2E-05 46.3 22.5 224 215-442 42-303 (386)
387 PF14870 PSII_BNR: Photosynthe 96.8 0.55 1.2E-05 45.3 27.6 227 167-406 61-301 (302)
388 KOG2079 Vacuolar assembly/sort 96.8 0.0055 1.2E-07 66.1 9.1 112 249-365 88-202 (1206)
389 KOG2395 Protein involved in va 96.8 0.042 9E-07 55.3 14.3 132 186-321 355-500 (644)
390 KOG1897 Damage-specific DNA bi 96.7 0.3 6.5E-06 52.9 21.3 171 188-365 751-941 (1096)
391 PF05694 SBP56: 56kDa selenium 96.6 0.29 6.4E-06 48.8 19.0 195 261-455 88-346 (461)
392 KOG2079 Vacuolar assembly/sort 96.6 0.024 5.3E-07 61.4 12.2 92 180-272 102-199 (1206)
393 PF05694 SBP56: 56kDa selenium 96.6 0.96 2.1E-05 45.3 25.6 239 197-440 52-392 (461)
394 TIGR03074 PQQ_membr_DH membran 96.5 1 2.2E-05 49.4 24.4 195 220-417 194-485 (764)
395 KOG2444 WD40 repeat protein [G 96.5 0.0037 8.1E-08 56.2 4.5 140 306-453 33-179 (238)
396 PF12894 Apc4_WD40: Anaphase-p 96.4 0.012 2.5E-07 39.6 5.5 34 207-241 10-43 (47)
397 PF14870 PSII_BNR: Photosynthe 96.4 1.1 2.3E-05 43.4 29.0 268 167-448 16-301 (302)
398 PRK10115 protease 2; Provision 96.3 2.2 4.8E-05 46.5 30.7 240 209-454 127-397 (686)
399 TIGR03074 PQQ_membr_DH membran 96.1 2 4.3E-05 47.1 23.9 194 178-374 195-485 (764)
400 COG3490 Uncharacterized protei 96.1 1.3 2.7E-05 41.7 21.1 246 196-448 57-345 (366)
401 PF10168 Nup88: Nuclear pore c 96.0 1.5 3.3E-05 47.6 22.3 94 208-323 84-181 (717)
402 TIGR02604 Piru_Ver_Nterm putat 96.0 1.9 4.1E-05 43.1 24.0 142 209-352 14-201 (367)
403 COG3292 Predicted periplasmic 96.0 1.2 2.5E-05 45.8 19.5 279 157-446 154-442 (671)
404 PF10647 Gmad1: Lipoprotein Lp 96.0 0.91 2E-05 42.8 18.3 158 293-456 25-202 (253)
405 PRK13684 Ycf48-like protein; P 96.0 1.9 4E-05 42.6 32.1 265 170-450 48-330 (334)
406 KOG4499 Ca2+-binding protein R 96.0 0.5 1.1E-05 43.0 15.1 135 209-344 109-264 (310)
407 COG3204 Uncharacterized protei 96.0 1.5 3.3E-05 41.4 19.6 204 147-351 65-301 (316)
408 KOG2444 WD40 repeat protein [G 95.9 0.015 3.3E-07 52.4 5.6 101 220-321 70-177 (238)
409 PHA03098 kelch-like protein; P 95.9 0.38 8.3E-06 50.7 17.3 190 255-455 290-515 (534)
410 PF12234 Rav1p_C: RAVE protein 95.9 0.26 5.7E-06 52.0 15.3 109 293-408 31-155 (631)
411 COG3490 Uncharacterized protei 95.7 1.8 3.9E-05 40.7 18.3 199 253-458 70-317 (366)
412 PF15390 DUF4613: Domain of un 95.7 0.41 8.9E-06 49.2 15.2 149 291-453 19-188 (671)
413 PHA03098 kelch-like protein; P 95.7 0.39 8.5E-06 50.7 16.2 144 219-369 294-467 (534)
414 COG3823 Glutamine cyclotransfe 95.6 0.65 1.4E-05 41.6 14.3 179 171-352 49-247 (262)
415 PRK13684 Ycf48-like protein; P 95.6 2.6 5.6E-05 41.5 21.7 183 173-364 138-329 (334)
416 PF12894 Apc4_WD40: Anaphase-p 95.6 0.04 8.6E-07 37.0 5.3 34 291-325 11-44 (47)
417 PF15390 DUF4613: Domain of un 95.5 1.1 2.4E-05 46.3 17.2 169 209-388 20-213 (671)
418 KOG2247 WD40 repeat-containing 95.4 0.0019 4.1E-08 64.0 -2.2 146 293-445 36-182 (615)
419 KOG3630 Nuclear pore complex, 95.4 0.21 4.6E-06 54.8 12.7 141 293-438 102-260 (1405)
420 PF14727 PHTB1_N: PTHB1 N-term 95.4 3.6 7.8E-05 41.7 29.7 267 178-457 38-366 (418)
421 KOG1897 Damage-specific DNA bi 95.4 5.5 0.00012 43.7 27.6 278 170-452 492-816 (1096)
422 KOG1916 Nuclear protein, conta 95.1 0.026 5.6E-07 60.1 4.6 152 187-371 153-328 (1283)
423 PRK10115 protease 2; Provision 95.0 6.7 0.00015 42.7 25.4 176 270-451 153-344 (686)
424 PF05096 Glu_cyclase_2: Glutam 94.9 3.4 7.5E-05 38.8 26.3 189 242-440 35-249 (264)
425 PF10647 Gmad1: Lipoprotein Lp 94.8 0.88 1.9E-05 42.9 13.9 115 335-453 25-146 (253)
426 COG5167 VID27 Protein involved 94.8 0.47 1E-05 47.9 12.0 142 218-366 477-632 (776)
427 PHA02790 Kelch-like protein; P 94.6 2 4.4E-05 44.6 17.4 130 188-324 288-426 (480)
428 KOG2280 Vacuolar assembly/sort 94.6 2 4.4E-05 45.5 16.7 173 169-345 85-271 (829)
429 TIGR02604 Piru_Ver_Nterm putat 94.6 1.7 3.7E-05 43.4 16.2 144 292-442 14-204 (367)
430 KOG2377 Uncharacterized conser 94.6 0.61 1.3E-05 46.5 12.2 150 171-321 26-185 (657)
431 KOG2280 Vacuolar assembly/sort 94.1 4.1 8.9E-05 43.3 17.6 181 230-418 64-255 (829)
432 KOG1983 Tomosyn and related SN 94.0 2.4 5.2E-05 47.9 17.2 231 206-455 33-268 (993)
433 KOG2247 WD40 repeat-containing 93.8 0.017 3.8E-07 57.5 -0.1 231 212-453 38-282 (615)
434 COG1520 FOG: WD40-like repeat 93.7 8.2 0.00018 38.5 27.5 199 176-377 67-279 (370)
435 PF08728 CRT10: CRT10; InterP 93.7 2.7 5.7E-05 45.2 15.7 152 168-320 39-245 (717)
436 PF10395 Utp8: Utp8 family; I 93.6 6.9 0.00015 41.7 18.5 164 205-375 126-314 (670)
437 TIGR03118 PEPCTERM_chp_1 conse 93.6 7 0.00015 37.4 25.4 216 210-431 24-307 (336)
438 COG5276 Uncharacterized conser 93.2 7.8 0.00017 36.8 24.5 192 249-453 85-287 (370)
439 smart00036 CNH Domain found in 93.1 9 0.0002 37.1 28.2 227 179-419 14-280 (302)
440 PF12234 Rav1p_C: RAVE protein 93.0 1.7 3.7E-05 46.1 13.1 100 178-278 41-156 (631)
441 KOG3616 Selective LIM binding 92.7 2.6 5.6E-05 44.7 13.5 89 363-457 323-411 (1636)
442 PF10168 Nup88: Nuclear pore c 92.6 4.3 9.4E-05 44.2 15.8 33 420-452 145-180 (717)
443 PF12657 TFIIIC_delta: Transcr 92.5 0.52 1.1E-05 41.6 7.4 70 169-238 6-121 (173)
444 PF10214 Rrn6: RNA polymerase 92.4 21 0.00045 39.6 27.3 111 292-410 146-277 (765)
445 PLN00033 photosystem II stabil 92.4 13 0.00029 37.4 32.0 266 169-448 89-396 (398)
446 TIGR03118 PEPCTERM_chp_1 conse 92.1 11 0.00025 36.0 21.4 198 252-454 24-282 (336)
447 PRK14131 N-acetylneuraminic ac 91.9 15 0.00032 36.8 18.8 55 256-312 81-149 (376)
448 PF07569 Hira: TUP1-like enhan 91.4 1.6 3.6E-05 40.1 9.6 72 252-324 14-98 (219)
449 PHA02790 Kelch-like protein; P 91.4 9.9 0.00022 39.5 16.5 182 260-453 272-472 (480)
450 PLN02153 epithiospecifier prot 91.3 16 0.00035 36.0 19.7 132 188-325 51-229 (341)
451 PF14761 HPS3_N: Hermansky-Pud 91.1 12 0.00025 34.1 15.5 110 254-368 21-165 (215)
452 TIGR03547 muta_rot_YjhT mutatr 91.0 17 0.00037 35.8 19.4 56 255-312 59-128 (346)
453 PF14655 RAB3GAP2_N: Rab3 GTPa 90.9 3.5 7.6E-05 41.6 12.1 87 287-375 303-407 (415)
454 PF14781 BBS2_N: Ciliary BBSom 90.7 8.8 0.00019 32.0 13.2 112 213-329 3-133 (136)
455 TIGR02276 beta_rpt_yvtn 40-res 90.7 1.2 2.5E-05 28.6 5.9 42 343-386 1-42 (42)
456 TIGR03548 mutarot_permut cycli 90.5 18 0.00039 35.2 20.3 110 255-369 68-197 (323)
457 KOG1900 Nuclear pore complex, 90.4 4 8.7E-05 46.1 12.7 139 310-454 96-275 (1311)
458 PF11635 Med16: Mediator compl 90.2 33 0.00072 37.9 20.1 68 377-446 259-345 (753)
459 PF10313 DUF2415: Uncharacteri 90.2 1.2 2.5E-05 29.2 5.2 31 209-239 1-34 (43)
460 PF14781 BBS2_N: Ciliary BBSom 90.1 10 0.00022 31.7 13.8 109 296-410 3-126 (136)
461 PF14727 PHTB1_N: PTHB1 N-term 89.9 24 0.00053 35.8 25.2 141 220-365 37-203 (418)
462 COG4590 ABC-type uncharacteriz 89.7 3 6.6E-05 41.7 10.1 156 208-369 220-389 (733)
463 KOG4460 Nuclear pore complex, 89.7 11 0.00024 38.6 14.1 28 292-319 104-131 (741)
464 PF11725 AvrE: Pathogenicity f 89.6 19 0.0004 42.2 17.2 227 209-447 438-768 (1774)
465 KOG1896 mRNA cleavage and poly 89.5 24 0.00052 39.9 17.4 180 182-365 999-1212(1366)
466 PF10313 DUF2415: Uncharacteri 89.3 1.9 4.1E-05 28.2 5.7 32 334-367 1-34 (43)
467 PF10433 MMS1_N: Mono-function 89.3 31 0.00067 36.1 22.1 242 178-431 223-503 (504)
468 PF14761 HPS3_N: Hermansky-Pud 88.9 18 0.00039 32.9 16.1 139 305-450 30-213 (215)
469 COG5167 VID27 Protein involved 88.8 5.7 0.00012 40.5 11.3 130 186-321 489-632 (776)
470 COG5290 IkappaB kinase complex 88.7 18 0.00038 39.1 15.2 216 208-433 112-348 (1243)
471 PF11715 Nup160: Nucleoporin N 88.4 11 0.00024 39.9 14.4 74 259-332 157-259 (547)
472 TIGR03548 mutarot_permut cycli 87.8 15 0.00033 35.8 14.0 83 187-269 139-233 (323)
473 PF10395 Utp8: Utp8 family; I 87.8 42 0.00092 35.9 23.5 240 170-418 30-314 (670)
474 PF08728 CRT10: CRT10; InterP 87.8 29 0.00063 37.6 16.5 111 336-450 103-245 (717)
475 KOG4460 Nuclear pore complex, 87.7 16 0.00034 37.6 13.5 34 423-456 167-203 (741)
476 KOG2377 Uncharacterized conser 87.6 17 0.00038 36.6 13.7 153 294-454 25-188 (657)
477 PLN02193 nitrile-specifier pro 87.4 27 0.00058 36.2 16.1 134 187-324 244-413 (470)
478 PLN02153 epithiospecifier prot 87.3 31 0.00068 33.9 16.5 95 187-281 101-228 (341)
479 PLN00033 photosystem II stabil 87.1 36 0.00078 34.4 26.5 107 290-406 279-396 (398)
480 PF02333 Phytase: Phytase; In 86.6 37 0.0008 33.9 20.2 185 261-453 69-292 (381)
481 PLN02193 nitrile-specifier pro 86.4 44 0.00096 34.6 19.6 134 188-325 194-355 (470)
482 PF07569 Hira: TUP1-like enhan 85.8 8.2 0.00018 35.5 10.1 74 170-244 15-101 (219)
483 PF12768 Rax2: Cortical protei 85.7 17 0.00036 34.8 12.4 89 187-277 16-122 (281)
484 PF03088 Str_synth: Strictosid 85.6 9.4 0.0002 29.5 8.7 41 356-396 35-75 (89)
485 PF12768 Rax2: Cortical protei 85.4 19 0.0004 34.5 12.6 116 270-387 16-146 (281)
486 PF03022 MRJP: Major royal jel 84.6 39 0.00084 32.5 14.8 134 314-452 35-216 (287)
487 KOG1898 Splicing factor 3b, su 84.5 76 0.0016 35.7 18.5 154 293-455 879-1052(1205)
488 PF11715 Nup160: Nucleoporin N 83.9 8.7 0.00019 40.6 10.8 72 176-247 157-257 (547)
489 KOG1916 Nuclear protein, conta 83.9 1.8 3.9E-05 46.8 5.3 42 301-343 193-234 (1283)
490 COG3292 Predicted periplasmic 83.3 62 0.0014 33.8 17.0 285 156-452 194-492 (671)
491 TIGR03547 muta_rot_YjhT mutatr 83.3 49 0.0011 32.5 23.2 83 187-269 29-128 (346)
492 PF12657 TFIIIC_delta: Transcr 82.8 8.8 0.00019 33.7 8.7 32 422-453 86-123 (173)
493 PRK14131 N-acetylneuraminic ac 82.7 55 0.0012 32.7 23.2 84 186-269 49-149 (376)
494 TIGR02276 beta_rpt_yvtn 40-res 82.3 7.4 0.00016 24.6 6.1 32 387-419 1-32 (42)
495 PF08801 Nucleoporin_N: Nup133 82.1 61 0.0013 33.0 15.8 31 292-322 190-220 (422)
496 KOG1983 Tomosyn and related SN 81.8 43 0.00094 38.2 15.5 73 331-413 196-268 (993)
497 KOG1898 Splicing factor 3b, su 81.7 97 0.0021 34.9 27.0 113 163-275 535-668 (1205)
498 PF08801 Nucleoporin_N: Nup133 79.6 65 0.0014 32.7 15.0 31 378-410 190-220 (422)
499 KOG1900 Nuclear pore complex, 79.6 32 0.00069 39.4 13.0 141 181-322 93-273 (1311)
500 PF07676 PD40: WD40-like Beta 79.5 10 0.00022 23.8 5.9 35 414-448 1-38 (39)
No 1
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-68 Score=522.96 Aligned_cols=418 Identities=52% Similarity=0.919 Sum_probs=357.3
Q ss_pred CCCCCCCCcccCCCCCC-Cccc-ccccCCCCCCCCccC--CCCCCChHHHHHHHHHHhCCCCC--CCcc-CCCCCCC-CC
Q 011971 40 PSRAIYSDRFIPSRSSS-NFDL-FNISQPSPNSPAVTD--SHKDDNSGTYTALLRAALFGPET--PEKK-DVLGPPS-GR 111 (474)
Q Consensus 40 ~~~~~~~dr~ip~~~~~-~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~-~~ 111 (474)
+....++|||||.|... ++.. |..... ...+.+.. +........|..++++|+++.+. ++.. ...+..+ .+
T Consensus 40 ~~~~~~~~rf~P~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~ 118 (484)
T KOG0305|consen 40 SPSSKVGDRFIPSRLSSEEFNRNFKYIGS-FSRPNKRSALDTGRESSSLAASLLRSELFKSNKITSEQSLRALPDEPNRD 118 (484)
T ss_pred CcccccCCccCCcccchhhcccccccccc-ccccccccccccccccchhhhhhhhhhhhccCccchhhhhhhccCCcccc
Confidence 34567999999999984 6644 433221 11111110 11123455667899999998651 0101 1122223 37
Q ss_pred ccccccCCCcCC-CCCCCCCcc--CCCcCCCCCCCCCCCCCCCCCCCcccccCCCCCCCcceeeeeCCCCcEEEEEcCCe
Q 011971 112 NIFRFKSETRRS-LHSLSPFGF--DDDVASGVSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNC 188 (474)
Q Consensus 112 ~~~~~~~~~~~~-~~~~~p~~~--~~~~~~~~~~~~~~~~r~i~~~p~~~l~ap~~~~d~~v~~l~~s~~~~la~~~d~~ 188 (474)
+||.|+..++.+ .....|... ...........|++..|++++.|+++||||++.+|||++.++|+..++||++++..
T Consensus 119 ~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~r~~~r~~~~~p~rvLDaP~l~dDfY~nlldWss~n~laValg~~ 198 (484)
T KOG0305|consen 119 RILTYKSKAPRPRSRTQEPDSVYPSAESSIRLLSSPRKLKRKIPQTPYRVLDAPGLQDDFYLNLLDWSSANVLAVALGQS 198 (484)
T ss_pred ceeEecccCCCCccccccccccccccccccccccccccccCcccCChhhhccCCcccccHhhhHhhcccCCeEEEEecce
Confidence 999999877653 222223211 11111123445899999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecC-CCCcEEEEEecCCEEEEEe
Q 011971 189 VYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG-HRLRVGALAWSSSLLSSGS 267 (474)
Q Consensus 189 V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~~~~~l~sgs 267 (474)
||+|+..++++..+++++ .+.|+++.|+++|.+||+|..+|.|.|||..+.+.++.+.+ |..+|.+++|+...+.+|+
T Consensus 199 vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGs 277 (484)
T KOG0305|consen 199 VYLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGS 277 (484)
T ss_pred EEEEecCCCceEEeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEec
Confidence 999999999999999876 89999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCc
Q 011971 268 RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHG 347 (474)
Q Consensus 268 ~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 347 (474)
.|+.|.++|++..+.....+.+|.++||+++|++|+++||+|++|+.+.|||....+++..+..|.++|++++|+|....
T Consensus 278 r~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~ 357 (484)
T KOG0305|consen 278 RDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSG 357 (484)
T ss_pred CCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccC
Confidence 99999999999988766678999999999999999999999999999999999989999999999999999999999999
Q ss_pred EEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEE
Q 011971 348 LLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYL 427 (474)
Q Consensus 348 ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l 427 (474)
|||+|||+.|++|+|||+.+++.+..+.++++|++|.|++..++|++++|+.+++|.||++++++++..+.+|..+|.++
T Consensus 358 lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~l 437 (484)
T KOG0305|consen 358 LLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYL 437 (484)
T ss_pred ceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 011971 428 AISPDGQTIVTGAGDETLRFWNVFPSPKSQNT 459 (474)
Q Consensus 428 ~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~ 459 (474)
+++|||..|++|+.|++|+||++++..+.+..
T Consensus 438 a~SPdg~~i~t~a~DETlrfw~~f~~~~~~~~ 469 (484)
T KOG0305|consen 438 ALSPDGETIVTGAADETLRFWNLFDERPKSTK 469 (484)
T ss_pred EECCCCCEEEEecccCcEEeccccCCCCcccc
Confidence 99999999999999999999999997655544
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-42 Score=321.33 Aligned_cols=295 Identities=25% Similarity=0.394 Sum_probs=256.9
Q ss_pred CCcceeeeeCCC-CcEEE-EEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEE
Q 011971 166 DDFYLNLVDWSS-HNVLA-VGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (474)
Q Consensus 166 ~d~~v~~l~~s~-~~~la-~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~ 243 (474)
++-.|-|+.|+| +..|+ ++.|.++++||..+......++ +|...|.||+|+|||+.||+|+.||+|++||..+++++
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~ 192 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCK-GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI 192 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeec-CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc
Confidence 344588999999 44444 4568899999999999988886 89999999999999999999999999999999888754
Q ss_pred -EEecCCCCcEEEEEecC-------CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcE
Q 011971 244 -RTMEGHRLRVGALAWSS-------SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRL 315 (474)
Q Consensus 244 -~~~~~h~~~V~~l~~~~-------~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v 315 (474)
+.+.+|...|++++|.+ .+|++++.||.|+|||+..+. ++..+.+|+..|+|+.|-.+| ++++|+.|++|
T Consensus 193 g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtI 270 (480)
T KOG0271|consen 193 GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTI 270 (480)
T ss_pred cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcCCc-eEEecCCCceE
Confidence 67899999999999973 589999999999999998876 688899999999999997554 99999999999
Q ss_pred EEEECCCCcceEEEccCCCcEEEEEEC-----------CCCCc------------------------EEEEecCCCCCeE
Q 011971 316 FVWNQHSTQPVLKYCEHTAAVKAIAWS-----------PHLHG------------------------LLASGGGTADRCI 360 (474)
Q Consensus 316 ~iwd~~~~~~~~~~~~h~~~V~~l~~s-----------p~~~~------------------------ll~sg~Gt~d~~I 360 (474)
++|+...|....++++|...|+.++.+ |.+.. .+++|+ .|.++
T Consensus 271 kvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs--Dd~tl 348 (480)
T KOG0271|consen 271 KVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS--DDFTL 348 (480)
T ss_pred EEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec--CCceE
Confidence 999999999999999999999999887 22222 477776 89999
Q ss_pred EEEECCCCc-eeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEE
Q 011971 361 RFWNTTTNT-HLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVT 438 (474)
Q Consensus 361 ~iwd~~~~~-~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t 438 (474)
.+|+-...+ ++..+. |..-|..+.||||++++++ ++-|..|++|+-.+++.+.+|.||-+.|..++|+.|.++|++
T Consensus 349 flW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IAS--aSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS 426 (480)
T KOG0271|consen 349 FLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIAS--ASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS 426 (480)
T ss_pred EEecccccccchhhhhchhhheeeEEECCCccEEEE--eecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE
Confidence 999965443 554443 5667999999999999999 779999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCCCCCCCC-CCcccCC
Q 011971 439 GAGDETLRFWNVFPSPKSQNTD-SEIGASS 467 (474)
Q Consensus 439 ~s~Dg~I~iW~l~~~~~~~~~~-~~~~~~s 467 (474)
|+.|.+|++|++.++...+... ++..+..
T Consensus 427 ~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~ 456 (480)
T KOG0271|consen 427 GSKDSTLKVWDVRTKKLKQDLPGHADEVFA 456 (480)
T ss_pred cCCCceEEEEEeeeeeecccCCCCCceEEE
Confidence 9999999999999988776554 5555443
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.1e-42 Score=321.71 Aligned_cols=282 Identities=23% Similarity=0.397 Sum_probs=256.4
Q ss_pred CCCCCCCcceeeeeCCC-C-cEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEec
Q 011971 161 APALQDDFYLNLVDWSS-H-NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR--NTHLAVGTSHGKVQIWD 236 (474)
Q Consensus 161 ap~~~~d~~v~~l~~s~-~-~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~--g~~la~gs~dg~I~iwd 236 (474)
...+.++-.+..+.++. + .+++++.+|.++||+..+...+..+. +|...|.++.|+|. +..||+|+.||++++|+
T Consensus 169 ~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~ 247 (459)
T KOG0272|consen 169 CSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATASADGTVKLWK 247 (459)
T ss_pred hhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEe-ccccceeeEEEccCCCccceeeeccCCceeeec
Confidence 34456777788888887 4 45556679999999999998777775 99999999999997 56899999999999999
Q ss_pred CCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCc
Q 011971 237 ASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNR 314 (474)
Q Consensus 237 ~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~ 314 (474)
+++...+..+.+|..+|..++|+ +++|.+++.|.+-++||+++... +....+|...|.+++|++||.++++||.|..
T Consensus 248 ~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~ 326 (459)
T KOG0272|consen 248 LSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQPDGSLAATGGLDSL 326 (459)
T ss_pred cCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-hHhhcccccccceeEecCCCceeeccCccch
Confidence 99999999999999999999998 58999999999999999999874 5667899999999999999999999999999
Q ss_pred EEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcC-CCCeE
Q 011971 315 LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSK-NVNEL 392 (474)
Q Consensus 315 v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~-~~~~l 392 (474)
-+|||++++.++..+.+|..+|.+|+|+|+|. .+++|+ .|++++|||++....+..+. |.+-|..+.|+| .|.+|
T Consensus 327 ~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy-~lATgs--~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 327 GRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY-HLATGS--SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFL 403 (459)
T ss_pred hheeecccCcEEEEecccccceeeEeECCCce-EEeecC--CCCcEEEeeecccccceecccccchhhheEecccCCeEE
Confidence 99999999999999999999999999999985 777876 79999999999999988887 556699999999 55666
Q ss_pred EEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 011971 393 VSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449 (474)
Q Consensus 393 ~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~ 449 (474)
++ ++.|+.++||...++.++..+.||.+.|.++.+++|+++|+|++.|.++++|.
T Consensus 404 ~T--asyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 404 VT--ASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EE--cccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 66 67899999999999999999999999999999999999999999999999996
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.4e-42 Score=315.40 Aligned_cols=278 Identities=29% Similarity=0.529 Sum_probs=251.5
Q ss_pred CCcceeeeeCCC-CcEEEEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcC-----CCCEEEEEeCCCcEEEecCC
Q 011971 166 DDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-----RNTHLAVGTSHGKVQIWDAS 238 (474)
Q Consensus 166 ~d~~v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp-----~g~~la~gs~dg~I~iwd~~ 238 (474)
++-+|.|++|+| +..||.| .+|.|.+||..+|+..-..--+|...|++++|.| ..++||+++.||.|+|||+.
T Consensus 156 H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~ 235 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK 235 (480)
T ss_pred CccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc
Confidence 456899999999 5566655 5999999999999876655449999999999986 56799999999999999999
Q ss_pred CCeEEEEecCCCCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEe-----------cCCC--
Q 011971 239 RCKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWS-----------YDNR-- 304 (474)
Q Consensus 239 ~~~~~~~~~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s-----------pd~~-- 304 (474)
.++++..+.+|+.+|+|+.|. ..++++|+.|++|++|+...+. +...+.+|...|+.|+.+ |.++
T Consensus 236 ~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~-~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~ 314 (480)
T KOG0271|consen 236 LGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGK-LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKP 314 (480)
T ss_pred CceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchh-HHHhhcccchheeeeeccchhhhhccccccccccC
Confidence 999999999999999999999 4899999999999999998865 788999999999999877 2233
Q ss_pred -----------------------EEEEEeCCCcEEEEECCC-CcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeE
Q 011971 305 -----------------------ELASGGNDNRLFVWNQHS-TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCI 360 (474)
Q Consensus 305 -----------------------~lasg~~Dg~v~iwd~~~-~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I 360 (474)
.|++|+.|+++.+|+... .+++..+.+|+.-|+.+.|+||+. ++|+++ .|+.|
T Consensus 315 ~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaS--FDkSV 391 (480)
T KOG0271|consen 315 KSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR-YIASAS--FDKSV 391 (480)
T ss_pred CChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc-EEEEee--cccce
Confidence 499999999999999754 458888999999999999999987 667765 89999
Q ss_pred EEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEE
Q 011971 361 RFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTG 439 (474)
Q Consensus 361 ~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~ 439 (474)
++||.++|+.+..+. |-..|..++|+.|.+.|++ |+.|.++++|++++.+....+.||...|.++.|+|||+.+++|
T Consensus 392 kLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS--~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sg 469 (480)
T KOG0271|consen 392 KLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS--GSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASG 469 (480)
T ss_pred eeeeCCCcchhhhhhhccceeEEEEeccCccEEEE--cCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecC
Confidence 999999999999998 7788999999999999999 9999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEe
Q 011971 440 AGDETLRFWN 449 (474)
Q Consensus 440 s~Dg~I~iW~ 449 (474)
+.|..+++|.
T Consensus 470 gkdkv~~lw~ 479 (480)
T KOG0271|consen 470 GKDKVLRLWR 479 (480)
T ss_pred CCceEEEeec
Confidence 9999999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.3e-39 Score=288.76 Aligned_cols=273 Identities=23% Similarity=0.426 Sum_probs=253.2
Q ss_pred eeeeeCCC--CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC------e
Q 011971 170 LNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC------K 241 (474)
Q Consensus 170 v~~l~~s~--~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~------~ 241 (474)
+.+++|++ ..+++++.||.+.|||.-+...++.+.+ ....|..++|+|.|+++|+|+.|....||++.+. +
T Consensus 58 i~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~ 136 (343)
T KOG0286|consen 58 IYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR 136 (343)
T ss_pred eeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec-CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccce
Confidence 88999998 5688888899999999999888888876 3678999999999999999999999999999855 4
Q ss_pred EEEEecCCCCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec-CCCEEEEEeCCCcEEEEE
Q 011971 242 RVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWN 319 (474)
Q Consensus 242 ~~~~~~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~lasg~~Dg~v~iwd 319 (474)
..+.+.+|.+-+.|+.|- ...|++++.|.++.+||++++. .+..+.+|.+.|.+|.++| +++.+++|+-|+..++||
T Consensus 137 v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~-~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD 215 (343)
T KOG0286|consen 137 VSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ-QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWD 215 (343)
T ss_pred eeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccce-EEEEecCCcccEEEEecCCCCCCeEEecccccceeeee
Confidence 667789999999999997 5899999999999999999988 5888999999999999999 999999999999999999
Q ss_pred CCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC---CCeEEEEEcCCCCeEEEEE
Q 011971 320 QHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG---SQVCNLVWSKNVNELVSTH 396 (474)
Q Consensus 320 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~~~ 396 (474)
++.+..++.|.+|...|++|+|.|+|. -+++|+ .|++.++||++..+.+..+.+. ..|++++||..|++|++
T Consensus 216 ~R~~~c~qtF~ghesDINsv~ffP~G~-afatGS--DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfa-- 290 (343)
T KOG0286|consen 216 VRSGQCVQTFEGHESDINSVRFFPSGD-AFATGS--DDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFA-- 290 (343)
T ss_pred ccCcceeEeecccccccceEEEccCCC-eeeecC--CCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEe--
Confidence 999999999999999999999999987 566655 9999999999999998888754 46999999999999999
Q ss_pred ecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 011971 397 GYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449 (474)
Q Consensus 397 g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~ 449 (474)
|+.|..+.+||.-.++.+..+.+|..+|.+|..+|||-.|+||+.|.+|+||.
T Consensus 291 gy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 291 GYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999999999999999999999999999999995
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.8e-39 Score=301.83 Aligned_cols=258 Identities=25% Similarity=0.413 Sum_probs=239.9
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecCC----EEEEEeCCCcEEEEECcCC
Q 011971 205 LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSS----LLSSGSRDKSILQRDIRAQ 280 (474)
Q Consensus 205 ~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~----~l~sgs~dg~I~iwd~~~~ 280 (474)
++.+.+|..+.|+.+++.||+|+.+|.++||+..+...+.++.+|...|.++.|+|. .+++++.||++++|++.+.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 367889999999999999999999999999999999999999999999999999863 7999999999999999887
Q ss_pred cceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeE
Q 011971 281 EDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCI 360 (474)
Q Consensus 281 ~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I 360 (474)
. ++..+.+|...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.+++|.+||. |+++|| .|..-
T Consensus 252 ~-~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS-L~~tGG--lD~~~ 327 (459)
T KOG0272|consen 252 T-PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS-LAATGG--LDSLG 327 (459)
T ss_pred c-chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc-eeeccC--ccchh
Confidence 5 6889999999999999999999999999999999999999999888899999999999999997 888887 99999
Q ss_pred EEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECC-CCCEEEE
Q 011971 361 RFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISP-DGQTIVT 438 (474)
Q Consensus 361 ~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~t 438 (474)
+|||+++|.++..+. |..+|..+.|+|+|..|++ |+.|++++|||++....+.++.+|..-|+.+.|+| .|.+|+|
T Consensus 328 RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lAT--gs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLAT--GSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVT 405 (459)
T ss_pred heeecccCcEEEEecccccceeeEeECCCceEEee--cCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEE
Confidence 999999999999887 5678999999999999999 99999999999999999999999999999999999 7889999
Q ss_pred EeCCCcEEEEeCCCCCCCCCC-CCCcccCCc
Q 011971 439 GAGDETLRFWNVFPSPKSQNT-DSEIGASSL 468 (474)
Q Consensus 439 ~s~Dg~I~iW~l~~~~~~~~~-~~~~~~~s~ 468 (474)
++.|+++++|.-.+..+.+.. .|+..+.++
T Consensus 406 asyD~t~kiWs~~~~~~~ksLaGHe~kV~s~ 436 (459)
T KOG0272|consen 406 ASYDNTVKIWSTRTWSPLKSLAGHEGKVISL 436 (459)
T ss_pred cccCcceeeecCCCcccchhhcCCccceEEE
Confidence 999999999999988776654 566665554
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3e-37 Score=275.39 Aligned_cols=275 Identities=23% Similarity=0.346 Sum_probs=239.5
Q ss_pred eeeeeCCC---CcEEEEEcCCeEEEEeCCC-----CCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe
Q 011971 170 LNLVDWSS---HNVLAVGLGNCVYLWNACS-----SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (474)
Q Consensus 170 v~~l~~s~---~~~la~~~d~~V~lwd~~~-----~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~ 241 (474)
|..++-.+ +.++.++.|..+.+|++.. |...+.++ +|...|..+..++||++.++++.|+++++||+++++
T Consensus 18 Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~ 96 (315)
T KOG0279|consen 18 VTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE 96 (315)
T ss_pred EEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee-ccceEecceEEccCCceEEeccccceEEEEEecCCc
Confidence 55555543 5677777899999998754 55566665 899999999999999999999999999999999999
Q ss_pred EEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecC--CCEEEEEeCCCcEEE
Q 011971 242 RVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFV 317 (474)
Q Consensus 242 ~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd--~~~lasg~~Dg~v~i 317 (474)
..+.+.+|...|.+++|++ ..+++|++|.+|++|++...-.....-..|..-|.++.|+|+ ..+|++++.|++|++
T Consensus 97 ~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKv 176 (315)
T KOG0279|consen 97 STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKV 176 (315)
T ss_pred EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEE
Confidence 9999999999999999985 699999999999999987654332223334789999999997 679999999999999
Q ss_pred EECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEe
Q 011971 318 WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHG 397 (474)
Q Consensus 318 wd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g 397 (474)
||+++.+....+.+|.+.++.++++|||. +.++|| .||.+.+||++.++.+..+.+...|.+++|+|+.-.|+.++
T Consensus 177 Wnl~~~~l~~~~~gh~~~v~t~~vSpDGs-lcasGg--kdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at- 252 (315)
T KOG0279|consen 177 WNLRNCQLRTTFIGHSGYVNTVTVSPDGS-LCASGG--KDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT- 252 (315)
T ss_pred EccCCcchhhccccccccEEEEEECCCCC-EEecCC--CCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-
Confidence 99999999999999999999999999997 888876 99999999999999999999999999999999998888743
Q ss_pred cCCCeEEEEECCCCceeEEEcC----C-----CccEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 011971 398 YSQNQIIVWRYPTMSKLATLTG----H-----TFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 398 ~~dg~I~iwd~~~~~~~~~l~~----h-----~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
+..|+|||+.+...+.++.. . .-...+++|++||..|++|-.|+.|++|.+.
T Consensus 253 --~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 253 --ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred --CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 45599999999988877652 2 2345789999999999999999999999875
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.9e-35 Score=259.81 Aligned_cols=270 Identities=21% Similarity=0.337 Sum_probs=233.4
Q ss_pred EEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe--EEEEecCCCCcEEEEE
Q 011971 180 VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK--RVRTMEGHRLRVGALA 257 (474)
Q Consensus 180 ~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~ 257 (474)
++++|.|.+|++|.+.+|.....+. ..++.|..+...|+++.||+++. -.|++||+.++. .+.++.+|...|.++.
T Consensus 13 LvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVg 90 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVG 90 (311)
T ss_pred EEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEE
Confidence 4556679999999999999999885 23679999999999999999875 579999998765 6889999999999999
Q ss_pred ec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEc-cCCC
Q 011971 258 WS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC-EHTA 334 (474)
Q Consensus 258 ~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~-~h~~ 334 (474)
|. +..+++|++||+++|||++... ......|..+|+++..+|+...|++|.++|.|+|||+........+. +...
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EeecCeEEEecCCCceEEEEeccCcc--cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 97 7899999999999999999854 55566788999999999999999999999999999999876655543 4557
Q ss_pred cEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee------ec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011971 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC------MD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (474)
Q Consensus 335 ~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~------~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 407 (474)
.|.++...|+|..+++.. ..|..++|++.+...... +. +...+..+.+||++++|++ .+.|..++||+
T Consensus 169 ~i~sl~v~~dgsml~a~n---nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat--~ssdktv~iwn 243 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAAN---NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLAT--CSSDKTVKIWN 243 (311)
T ss_pred ceeeEEEcCCCcEEEEec---CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEe--ecCCceEEEEe
Confidence 899999999999666654 689999999987543332 22 5667999999999999999 77999999999
Q ss_pred CCCC-ceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 011971 408 YPTM-SKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQN 458 (474)
Q Consensus 408 ~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~ 458 (474)
..++ +....+++|...+..++||.||+||+||+.|+++++|++..+.+...
T Consensus 244 ~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 244 TDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQ 295 (311)
T ss_pred cCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeee
Confidence 9988 66677889999999999999999999999999999999998876543
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.2e-35 Score=277.36 Aligned_cols=280 Identities=21% Similarity=0.376 Sum_probs=252.1
Q ss_pred CCCCcceeeeeCCC-CcEEEEEc-CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe
Q 011971 164 LQDDFYLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (474)
Q Consensus 164 ~~~d~~v~~l~~s~-~~~la~~~-d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~ 241 (474)
..+.-.|++++|+. +.+||.|. +|.++||+...+... .+. .|.++|.++.|+..|+||++++.||++.+||..++.
T Consensus 232 ~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~-tl~-~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 232 VPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLIS-TLG-QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT 309 (524)
T ss_pred CCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhh-hhh-ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce
Confidence 33345699999997 77777775 899999998765543 332 689999999999999999999999999999999999
Q ss_pred EEEEecCCCCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011971 242 RVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (474)
Q Consensus 242 ~~~~~~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~ 320 (474)
....+.-|..+-..+.|- .+.|++.+.|+.|+++.+.... ++.++.+|.++|.+|.|+|.+.+|++++.|++++||..
T Consensus 310 ~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~ 388 (524)
T KOG0273|consen 310 VKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDR-PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSM 388 (524)
T ss_pred EEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCC-cceeeecccCceEEEEECCCCceEEEecCCCeeEeeec
Confidence 999999999998899996 5899999999999999998766 68889999999999999999999999999999999999
Q ss_pred CCCcceEEEccCCCcEEEEEECCCCC--------cEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeEEEEEcCCCCe
Q 011971 321 HSTQPVLKYCEHTAAVKAIAWSPHLH--------GLLASGGGTADRCIRFWNTTTNTHLSCM-DTGSQVCNLVWSKNVNE 391 (474)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~--------~ll~sg~Gt~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~ 391 (474)
........+..|...|..+.|+|.+. ..+++++ .|++|++||+..+.++..+ +|..+|.+++|+|+|++
T Consensus 389 ~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas--~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~y 466 (524)
T KOG0273|consen 389 GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS--FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRY 466 (524)
T ss_pred CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee--cCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcE
Confidence 99999999999999999999999764 3455554 7999999999999999998 68999999999999999
Q ss_pred EEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 011971 392 LVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 392 l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
+++ |+.||.|.+|+.++++.++.+.+. +.|..|+|+.+|..|..+..||.+++-|+.
T Consensus 467 lAs--Gs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 467 LAS--GSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEe--cCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999 999999999999999999998764 459999999999999999999999998874
No 10
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.7e-35 Score=279.33 Aligned_cols=305 Identities=22% Similarity=0.418 Sum_probs=254.9
Q ss_pred CCCCCCCCcccccCCCCCCCcceeeeeCCC--CcEEEEEc-CCeEEEEeCCC--CCEEEEE-----------ecCCCCCE
Q 011971 148 PRKVPRSPYKILDAPALQDDFYLNLVDWSS--HNVLAVGL-GNCVYLWNACS--SKVTKLC-----------DLGIDDSV 211 (474)
Q Consensus 148 ~r~i~~~p~~~l~ap~~~~d~~v~~l~~s~--~~~la~~~-d~~V~lwd~~~--~~~~~~~-----------~~~~~~~V 211 (474)
...||..-.+++. ..-.|.+++|+| ..++++|. +...++|++.. ....... ....+..|
T Consensus 164 ~~~I~~~~~kvl~-----~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdV 238 (524)
T KOG0273|consen 164 GVEIPSSKAKVLR-----HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDV 238 (524)
T ss_pred cccccccceeecc-----CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCc
Confidence 3456666666666 123489999999 44677765 56899999874 1111111 11234689
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecC
Q 011971 212 CSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSG 289 (474)
Q Consensus 212 ~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 289 (474)
++++|+.+|..||+|+.||.++||+. .+.++.++..|.++|.++.|+ +++|++++.|+++.+||..++. ....+.-
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~-~~q~f~~ 316 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT-VKQQFEF 316 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce-EEEeeee
Confidence 99999999999999999999999995 478888999999999999999 5899999999999999998877 4666777
Q ss_pred cCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc
Q 011971 290 HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (474)
Q Consensus 290 h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~ 369 (474)
|..+-..+.|-. ...+++++.|+.|+|+.+....|+.++.+|.+.|.++.|+|.+. ||++++ .|+++++|+.....
T Consensus 317 ~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LLaS~S--dD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 317 HSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-LLASCS--DDGTLKIWSMGQSN 392 (524)
T ss_pred ccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc-eEEEec--CCCeeEeeecCCCc
Confidence 888767888864 45799999999999999999999999999999999999999987 777776 89999999999888
Q ss_pred eeeeec-CCCCeEEEEEcCCCC---------eEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEE
Q 011971 370 HLSCMD-TGSQVCNLVWSKNVN---------ELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTG 439 (474)
Q Consensus 370 ~~~~~~-~~~~v~~l~~s~~~~---------~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~ 439 (474)
+...+. |...|..+.|+|+|. .+++ ...|+.|++||+..+.+++.|..|..+|.+|+|+|+|++|++|
T Consensus 393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~s--as~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsG 470 (524)
T KOG0273|consen 393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLAS--ASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASG 470 (524)
T ss_pred chhhhhhhccceeeEeecCCCCccCCCcCCceEEE--eecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEec
Confidence 888877 455799999999763 3444 6689999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCCCCCCCCCCccc
Q 011971 440 AGDETLRFWNVFPSPKSQNTDSEIGA 465 (474)
Q Consensus 440 s~Dg~I~iW~l~~~~~~~~~~~~~~~ 465 (474)
+.||.|.+|+...+...+......++
T Consensus 471 s~dg~V~iws~~~~~l~~s~~~~~~I 496 (524)
T KOG0273|consen 471 SLDGCVHIWSTKTGKLVKSYQGTGGI 496 (524)
T ss_pred CCCCeeEeccccchheeEeecCCCeE
Confidence 99999999999998877665555443
No 11
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.3e-37 Score=285.27 Aligned_cols=288 Identities=24% Similarity=0.420 Sum_probs=246.8
Q ss_pred ccccCCCCCCCcceeeeeCCC--CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011971 157 KILDAPALQDDFYLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQI 234 (474)
Q Consensus 157 ~~l~ap~~~~d~~v~~l~~s~--~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~i 234 (474)
|...+..-+....|+.|.|.| ..+++++..|.+.||+..+-....+. ..|+.+|+++.|+++|.++++|..+|.|++
T Consensus 86 Kf~h~s~NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtil-QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 86 KFVHTSSNKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETIL-QAHDSPVRTMKWSHNGTWMISGDKGGMIKY 164 (464)
T ss_pred ceEeccccccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHh-hhhcccceeEEEccCCCEEEEcCCCceEEe
Confidence 334443344456699999999 35777777899999998554433333 379999999999999999999999999999
Q ss_pred ecCCCCeEEEEecC-CCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC
Q 011971 235 WDASRCKRVRTMEG-HRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN 311 (474)
Q Consensus 235 wd~~~~~~~~~~~~-h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~ 311 (474)
|+.+-. .+..+.. |...|.+++|++ ..|++++.||+|+|||.....+ ...+.+|.-.|.++.|+|...+||+|+.
T Consensus 165 Wqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-e~vL~GHgwdVksvdWHP~kgLiasgsk 242 (464)
T KOG0284|consen 165 WQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGHGWDVKSVDWHPTKGLIASGSK 242 (464)
T ss_pred cccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-hheeccCCCCcceeccCCccceeEEccC
Confidence 997643 3444444 559999999985 7899999999999999988763 5667999999999999999999999999
Q ss_pred CCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCC
Q 011971 312 DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVN 390 (474)
Q Consensus 312 Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~ 390 (474)
|+.|++||.+++.++.++..|...|.++.|.|+++ +|++++ .|..++++|+++.+.+.++. |...+.++.|+|-..
T Consensus 243 DnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N-~Llt~s--kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~ 319 (464)
T KOG0284|consen 243 DNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN-WLLTGS--KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNE 319 (464)
T ss_pred CceeEeecCCCcchhhhhhhccceEEEEEEcCCCC-eeEEcc--CCceEEEEehhHhHHHHHhhcchhhheeeccccccc
Confidence 99999999999999999999999999999999995 666665 89999999999888888887 778899999999888
Q ss_pred eEEEEEecCCCeEEEEECCCCceeEEEc-CCCccEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 011971 391 ELVSTHGYSQNQIIVWRYPTMSKLATLT-GHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 391 ~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
-|+++ |+.||.|..|.+...+++..+. +|...|++|+|+|-|..|++|+.|.+++||.-.
T Consensus 320 ~lfts-gg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 320 SLFTS-GGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred cceee-ccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 77776 7799999999998666666664 799999999999999999999999999999754
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7e-35 Score=268.65 Aligned_cols=278 Identities=23% Similarity=0.365 Sum_probs=251.8
Q ss_pred CcceeeeeCCCCcEEEEE--cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCC-CeEE
Q 011971 167 DFYLNLVDWSSHNVLAVG--LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR-CKRV 243 (474)
Q Consensus 167 d~~v~~l~~s~~~~la~~--~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~-~~~~ 243 (474)
...+..+-+.|...+.+. .|.+|++||..++++...+. +|.+.|..|+|+..|++||+++.|=.+++||.++ .+++
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr-GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ 186 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR-GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCI 186 (406)
T ss_pred ccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh-ccccceeEEEEecCccEEEecCCccchhheeHHHHHHHH
Confidence 345777778885444443 48899999999999976664 8999999999999999999999998899999987 5678
Q ss_pred EEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011971 244 RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (474)
Q Consensus 244 ~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~ 321 (474)
+.+.+|...|.+++|- +++++++++|.+|+.|++.++. ++.++.+|..-|..+..+.||..+|++++|.+|++|-+.
T Consensus 187 ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~-cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~ 265 (406)
T KOG0295|consen 187 KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY-CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVA 265 (406)
T ss_pred HHhcCcccceeeEEEEecCCeeeecccccceeEEecccce-eEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEec
Confidence 8888999999999996 5999999999999999999988 799999999999999999999999999999999999999
Q ss_pred CCcceEEEccCCCcEEEEEECCCC--------------CcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEc
Q 011971 322 STQPVLKYCEHTAAVKAIAWSPHL--------------HGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWS 386 (474)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~--------------~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s 386 (474)
++++...+..|..+|.+++|.|.. ..++.+++ .|++|++||+.++.++.++. +.+.|+.++|+
T Consensus 266 t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S--rDktIk~wdv~tg~cL~tL~ghdnwVr~~af~ 343 (406)
T KOG0295|consen 266 TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS--RDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFS 343 (406)
T ss_pred cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec--ccceEEEEeccCCeEEEEEecccceeeeeEEc
Confidence 999999999999999999997742 23666665 99999999999999998886 77889999999
Q ss_pred CCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 011971 387 KNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 387 ~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l 450 (474)
|.|++|++ ..+|+.+++||+.+++++..+..|..-|+++.|..+-.+++||+-|.++++|..
T Consensus 344 p~Gkyi~S--caDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 344 PGGKYILS--CADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCeEEEE--EecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999 569999999999999999999999999999999999999999999999999974
No 13
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.3e-33 Score=265.63 Aligned_cols=275 Identities=31% Similarity=0.486 Sum_probs=244.0
Q ss_pred cceeeeeCCC-CcEEEEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE
Q 011971 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~ 245 (474)
-.+.+++|++ +++++++ .++.|++|+..+++...... .|...+.++.|++++++|++++.+|.|++||+.+++.+..
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~ 88 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT 88 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe-cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEE
Confidence 4589999999 4666555 48999999999887666554 6788899999999999999999999999999999888888
Q ss_pred ecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011971 246 MEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (474)
Q Consensus 246 ~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~ 323 (474)
+..|...+.++.|++ .++++++.++.|.+||+++.. ....+..|...|.++.|+|++.++++++.|+.|++||++++
T Consensus 89 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 167 (289)
T cd00200 89 LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG 167 (289)
T ss_pred EeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc
Confidence 999999999999986 677777779999999998665 46667789999999999999999999888999999999999
Q ss_pred cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeEEEEEcCCCCeEEEEEecCCCe
Q 011971 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQ 402 (474)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~ 402 (474)
+.+..+..|...+.+++|+|++..+++++ .|+.|++||+.+++.+..+ .+...+.++.|++++..+++ +..++.
T Consensus 168 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~ 242 (289)
T cd00200 168 KCVATLTGHTGEVNSVAFSPDGEKLLSSS---SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS--GSEDGT 242 (289)
T ss_pred ccceeEecCccccceEEECCCcCEEEEec---CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE--EcCCCc
Confidence 98889989999999999999987666654 5999999999999888888 56778999999999777776 667999
Q ss_pred EEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 011971 403 IIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449 (474)
Q Consensus 403 I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~ 449 (474)
|++|++.+++.+..+..|...|.+++|++++.+|++++.||.|++|+
T Consensus 243 i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 243 IRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999999999999999999999999999999999999999996
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-33 Score=278.92 Aligned_cols=286 Identities=20% Similarity=0.347 Sum_probs=247.5
Q ss_pred CcceeeeeCCC-CcEEEEEcCC--eEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEE
Q 011971 167 DFYLNLVDWSS-HNVLAVGLGN--CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (474)
Q Consensus 167 d~~v~~l~~s~-~~~la~~~d~--~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~ 243 (474)
+..+..+.|+. +..||.|+.+ .+.||+..+...+...+ +|...+++++++|||+++|+|+.||.|+|||..++-+.
T Consensus 307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~ 385 (893)
T KOG0291|consen 307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF 385 (893)
T ss_pred cceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE
Confidence 44577788887 8888888765 99999999887665543 89999999999999999999999999999999999999
Q ss_pred EEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCC-cEEEEEC
Q 011971 244 RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN-RLFVWNQ 320 (474)
Q Consensus 244 ~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg-~v~iwd~ 320 (474)
.++..|+..|+.+.|. ++.+++.+-||+|+.||+..............-...+++..|.|..+.+|+.|. .|+||++
T Consensus 386 vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~ 465 (893)
T KOG0291|consen 386 VTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSV 465 (893)
T ss_pred EEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEe
Confidence 9999999999999997 799999999999999999877643332233445678899999999999999887 5999999
Q ss_pred CCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCC-CceeeeecCCCCeEEEEEcCCCCeEEEEEecC
Q 011971 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-NTHLSCMDTGSQVCNLVWSKNVNELVSTHGYS 399 (474)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~ 399 (474)
++|+.+-.+.+|.++|.+++|+|++. +|++++ .|++|++||+-. ...+.++...+.+..+.|.|+|++|++ ...
T Consensus 466 qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~S--WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaV--aTl 540 (893)
T KOG0291|consen 466 QTGQLLDILSGHEGPVSGLSFSPDGS-LLASGS--WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAV--ATL 540 (893)
T ss_pred ecCeeeehhcCCCCcceeeEEccccC-eEEecc--ccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEE--EEe
Confidence 99999999999999999999999987 888876 999999999754 456778889999999999999999999 568
Q ss_pred CCeEEEEECCCCceeEEEcC--------------------CCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 011971 400 QNQIIVWRYPTMSKLATLTG--------------------HTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQN 458 (474)
Q Consensus 400 dg~I~iwd~~~~~~~~~l~~--------------------h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~ 458 (474)
||+|.+||...+..+..+.+ .....+.+++|+||.+|++|+....|++|++.++...+.
T Consensus 541 dgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkk 619 (893)
T KOG0291|consen 541 DGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKK 619 (893)
T ss_pred cceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeee
Confidence 99999999987766644432 124688999999999999999999999999998765554
No 15
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5e-33 Score=256.58 Aligned_cols=275 Identities=24% Similarity=0.388 Sum_probs=235.8
Q ss_pred eeeeeCCC-CcEEEEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec
Q 011971 170 LNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (474)
Q Consensus 170 v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~ 247 (474)
|.+++.+| .++++.| .|..-+||+..++.....+. +|.+.|+++.|+.+|.+||+|..+|.|+||+..++.....+.
T Consensus 67 vFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt-gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~ 145 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT-GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD 145 (399)
T ss_pred eEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec-CCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee
Confidence 67777787 4555555 47799999999999665553 999999999999999999999999999999999999888887
Q ss_pred CCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcc
Q 011971 248 GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP 325 (474)
Q Consensus 248 ~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~ 325 (474)
..-..+.=|.|++ .+|+.|+.||.+.+|.+.... ..+.+.+|..++++-.|.|+|+.+++|..||+|++||..++++
T Consensus 146 ~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 146 QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred cccCceEEEEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCce
Confidence 6667777788885 799999999999999998864 6788999999999999999999999999999999999999888
Q ss_pred eEEEcc---------------------------------------------------CCCcEEEEEECCCCCc--EEEEe
Q 011971 326 VLKYCE---------------------------------------------------HTAAVKAIAWSPHLHG--LLASG 352 (474)
Q Consensus 326 ~~~~~~---------------------------------------------------h~~~V~~l~~sp~~~~--ll~sg 352 (474)
++++.. +...+.++.+.|.... |+|+|
T Consensus 225 ~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G 304 (399)
T KOG0296|consen 225 LHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACG 304 (399)
T ss_pred eEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcc
Confidence 776641 0111122223332221 44554
Q ss_pred cCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCC
Q 011971 353 GGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPD 432 (474)
Q Consensus 353 ~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 432 (474)
+.||+|.|||+...+......+...|..+.|-+ ..+|++ ++.+|.|+.||.++++.+.++.||...|.+++++|+
T Consensus 305 --~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t--~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~ 379 (399)
T KOG0296|consen 305 --SVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLT--ACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQ 379 (399)
T ss_pred --cccceEEEEecccchhheeccCCCceEEEEEcC-cchhee--eccCceEEeeeccccceEEEEecCchheeEEEEcCC
Confidence 499999999999999989999999999999999 788888 779999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 011971 433 GQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 433 g~~l~t~s~Dg~I~iW~l~ 451 (474)
+++++|++.|++.++|++.
T Consensus 380 ~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 380 KRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CcEEEEecCCCeEEEEecC
Confidence 9999999999999999874
No 16
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4.6e-35 Score=268.03 Aligned_cols=276 Identities=22% Similarity=0.413 Sum_probs=243.6
Q ss_pred ceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecC
Q 011971 169 YLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG 248 (474)
Q Consensus 169 ~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~ 248 (474)
.|.|+.+..+.++++..|++|+|||..+-.....+. ||++.|.|+.|. .+.|++|+.|.+|+|||+++++++.++-+
T Consensus 199 gVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~-GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlih 275 (499)
T KOG0281|consen 199 GVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILT-GHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIH 275 (499)
T ss_pred ceEEEEecchhhhcccccCceEEeccccHHHHHhhh-cCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhh
Confidence 478999999999999999999999999988877764 999999999996 55999999999999999999999999999
Q ss_pred CCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcc--eEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcce
Q 011971 249 HRLRVGALAWSSSLLSSGSRDKSILQRDIRAQED--FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV 326 (474)
Q Consensus 249 h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~ 326 (474)
|...|..+.|+++++++++.|.+|.+||+..... +...+.+|...|+.+.|+ .+++++++.|.+|++|++.+++.+
T Consensus 276 HceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efv 353 (499)
T KOG0281|consen 276 HCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFV 353 (499)
T ss_pred hcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeee
Confidence 9999999999999999999999999999987652 345678999999999985 559999999999999999999999
Q ss_pred EEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-CCeEEEEEcCCCCeEEEEEecCCCeEEE
Q 011971 327 LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-SQVCNLVWSKNVNELVSTHGYSQNQIIV 405 (474)
Q Consensus 327 ~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~~g~~dg~I~i 405 (474)
.++.+|...|-|+.+. ..++++|+ .|.+|++||+..|.++..++.+ .-|.++.|. .+.+++ |..||.|+|
T Consensus 354 Rtl~gHkRGIAClQYr---~rlvVSGS--SDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVS--GaYDGkikv 424 (499)
T KOG0281|consen 354 RTLNGHKRGIACLQYR---DRLVVSGS--SDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVS--GAYDGKIKV 424 (499)
T ss_pred hhhhcccccceehhcc---CeEEEecC--CCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeee--ccccceEEE
Confidence 9999999999888876 34888876 8999999999999999988754 458888885 567888 889999999
Q ss_pred EECCCCc---------eeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCCCC
Q 011971 406 WRYPTMS---------KLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTD 460 (474)
Q Consensus 406 wd~~~~~---------~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~~ 460 (474)
||+..+. ++..+..|+++|..+.| |...|++++.|.+|.+||+..++..+...
T Consensus 425 Wdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~~~~~ 486 (499)
T KOG0281|consen 425 WDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPSAAEE 486 (499)
T ss_pred EecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcccccc
Confidence 9997643 34556679999999999 77789999999999999999988775443
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.8e-34 Score=286.51 Aligned_cols=243 Identities=23% Similarity=0.421 Sum_probs=224.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCC-------------------------------CeEEEEecCCCCcEEEE
Q 011971 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASR-------------------------------CKRVRTMEGHRLRVGAL 256 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~-------------------------------~~~~~~~~~h~~~V~~l 256 (474)
...++|..|++|+.+||.|..|..|++|.+.. ....+++.+|.++|...
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 46799999999999999999999999998752 12234577999999999
Q ss_pred EecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCC
Q 011971 257 AWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTA 334 (474)
Q Consensus 257 ~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~ 334 (474)
.|+| ++|+++++|++|++|.+++.. .+..+.+|..+|+.+.|+|.|-++|+++.|++.++|......++..+.+|.+
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s-~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghls 536 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLS 536 (707)
T ss_pred eecccccceeeccCCcceeeeecccce-eEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccccc
Confidence 9996 799999999999999999987 5777889999999999999999999999999999999999999999999999
Q ss_pred cEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce
Q 011971 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (474)
Q Consensus 335 ~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~ 413 (474)
.|.|+.|+|+.. ++++|+ .|+++++||+.+|..++.+. |.+.|.+++|||+|++|++ |..||.|.+||+.++..
T Consensus 537 DV~cv~FHPNs~-Y~aTGS--sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS--g~ed~~I~iWDl~~~~~ 611 (707)
T KOG0263|consen 537 DVDCVSFHPNSN-YVATGS--SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS--GDEDGLIKIWDLANGSL 611 (707)
T ss_pred ccceEEECCccc-ccccCC--CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee--cccCCcEEEEEcCCCcc
Confidence 999999999976 677765 99999999999999999887 6788999999999999999 99999999999999999
Q ss_pred eEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 011971 414 LATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKS 456 (474)
Q Consensus 414 ~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~ 456 (474)
+..+.+|++.|.+|.||.||..||+|+.|.+|++||+......
T Consensus 612 v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 612 VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 9999999999999999999999999999999999999866544
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.2e-33 Score=255.05 Aligned_cols=279 Identities=21% Similarity=0.365 Sum_probs=243.7
Q ss_pred CcceeeeeCCC-CcEEEEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEE
Q 011971 167 DFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (474)
Q Consensus 167 d~~v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~ 244 (474)
--+|.|+++.| +..++.| .|++|.|||+.++++...+. +|-..|..+++|+...||++++.|+.|+.||++..+.++
T Consensus 151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt-Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR 229 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT-GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR 229 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec-chhheeeeeeecccCceEEEecCCCeeEEEechhhhhHH
Confidence 35799999999 4455554 58999999999999877764 899999999999999999999999999999999999999
Q ss_pred EecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011971 245 TMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (474)
Q Consensus 245 ~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~ 322 (474)
.+.||-..|.|++.+| +.|++|++|.++++||+++.. .+..+.+|...|..+.+.|-..++++|+.|++|++||++.
T Consensus 230 ~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~a 308 (460)
T KOG0285|consen 230 HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRA 308 (460)
T ss_pred HhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeecc
Confidence 9999999999999996 799999999999999999987 5889999999999999999888999999999999999999
Q ss_pred CcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-CCCeEEEEEcCCCCeEEEEEecCCC
Q 011971 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-GSQVCNLVWSKNVNELVSTHGYSQN 401 (474)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~g~~dg 401 (474)
++...++..|...|.+++.+|... ++++++ -..|+-|++..|..+..+.. ..-+..+..+.|+ ++++ |.+.|
T Consensus 309 gkt~~tlt~hkksvral~lhP~e~-~fASas---~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~--G~dng 381 (460)
T KOG0285|consen 309 GKTMITLTHHKKSVRALCLHPKEN-LFASAS---PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVS--GGDNG 381 (460)
T ss_pred CceeEeeecccceeeEEecCCchh-hhhccC---CccceeccCCccchhhccccccceeeeeeeccCc-eEEE--cCCce
Confidence 999999999999999999999854 778775 55699999999998887664 4457777777665 4455 88999
Q ss_pred eEEEEECCCCceeEEEc-----C---CCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 402 QIIVWRYPTMSKLATLT-----G---HTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 402 ~I~iwd~~~~~~~~~l~-----~---h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
.|.+||.+++...+.+. | ....|.+.+|...|..|+||..|.+|++|.-++..
T Consensus 382 ~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~a 442 (460)
T KOG0285|consen 382 SIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHA 442 (460)
T ss_pred EEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccccc
Confidence 99999999886655442 1 24568999999999999999999999999866543
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.4e-34 Score=268.50 Aligned_cols=255 Identities=21% Similarity=0.382 Sum_probs=226.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEe
Q 011971 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVS 285 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~ 285 (474)
...|..|.|.|+|+.|++|+..|.+.+|+.........+..|..+|.++.|+ +..+++|+.+|.|++|+..... +.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--Vk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--VK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--hH
Confidence 4689999999999999999999999999986665556677999999999997 6899999999999999987654 44
Q ss_pred eecCcC-CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011971 286 KLSGHK-SEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (474)
Q Consensus 286 ~~~~h~-~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd 364 (474)
.+.+|. ..|.+++|+|+...|++++.||+|+|||....+....+.+|.-.|++++|+|.. .++++|+ .|..|++||
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k-gLiasgs--kDnlVKlWD 250 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK-GLIASGS--KDNLVKLWD 250 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc-ceeEEcc--CCceeEeec
Confidence 555554 899999999999999999999999999999998888899999999999999985 4888887 899999999
Q ss_pred CCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECC-CCCEEEEEeCC
Q 011971 365 TTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISP-DGQTIVTGAGD 442 (474)
Q Consensus 365 ~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~t~s~D 442 (474)
.+++.++.++. |...|..+.|++++++|++ ++.|..+++||+++++.+..+++|...|++++|+| ...+|.+|+.|
T Consensus 251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt--~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D 328 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLT--GSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSD 328 (464)
T ss_pred CCCcchhhhhhhccceEEEEEEcCCCCeeEE--ccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCC
Confidence 99999998876 5667999999999999999 88999999999999999999999999999999999 55688899999
Q ss_pred CcEEEEeCCCCCCC--CCCCCCcccCCcC
Q 011971 443 ETLRFWNVFPSPKS--QNTDSEIGASSLG 469 (474)
Q Consensus 443 g~I~iW~l~~~~~~--~~~~~~~~~~s~~ 469 (474)
|.|.+|.+...... -...++..+|++.
T Consensus 329 gsvvh~~v~~~~p~~~i~~AHd~~iwsl~ 357 (464)
T KOG0284|consen 329 GSVVHWVVGLEEPLGEIPPAHDGEIWSLA 357 (464)
T ss_pred CceEEEeccccccccCCCcccccceeeee
Confidence 99999999943333 2346788888874
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2e-32 Score=280.03 Aligned_cols=277 Identities=25% Similarity=0.421 Sum_probs=241.8
Q ss_pred cceeeeeCCC-CcEEEEE-cCCeEEEEeCCCCC--EEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecC-CCCeE
Q 011971 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSK--VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA-SRCKR 242 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~--~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~-~~~~~ 242 (474)
..+.++++++ ++.++.+ .++.+++|+..+.+ ..... .+|...|.+++|+|+|.++++|+.|++|+|||+ ..+..
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~ 238 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN 238 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence 4578899998 5555555 68999999997776 43333 389999999999999999999999999999999 56689
Q ss_pred EEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011971 243 VRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (474)
Q Consensus 243 ~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~ 320 (474)
++++.+|...|++++|++ +++++|+.|++|++||+++++ +...+.+|.+.|.+++|++++++|++++.|+.|+|||+
T Consensus 239 ~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~ 317 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDL 317 (456)
T ss_pred EEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEEC
Confidence 999999999999999984 799999999999999999965 78999999999999999999999999999999999999
Q ss_pred CCCc--ceEEEccCCCc--EEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-C---CeEEEEEcCCCCeE
Q 011971 321 HSTQ--PVLKYCEHTAA--VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-S---QVCNLVWSKNVNEL 392 (474)
Q Consensus 321 ~~~~--~~~~~~~h~~~--V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~-~---~v~~l~~s~~~~~l 392 (474)
.++. ++..+..+... +++++|+|++.++++.. .|+.+++||+..+..+..+... . .+.....++.+.++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~---~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (456)
T KOG0266|consen 318 ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS---LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLI 394 (456)
T ss_pred CCCceeeeecccCCCCCCceeEEEECCCCcEEEEec---CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeE
Confidence 9998 55677666555 99999999999777654 7999999999999888777633 2 23344557788999
Q ss_pred EEEEecCCCeEEEEECCCCceeEEEcCC-CccEEEEEECCCCCEEEEEe--CCCcEEEEeCC
Q 011971 393 VSTHGYSQNQIIVWRYPTMSKLATLTGH-TFRVLYLAISPDGQTIVTGA--GDETLRFWNVF 451 (474)
Q Consensus 393 ~~~~g~~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~t~s--~Dg~I~iW~l~ 451 (474)
++ |+.|+.|.+|++.++..+..+.+| ...|..++++|...++++++ .|+.|++|...
T Consensus 395 ~s--g~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 395 YS--GSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EE--EeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 98 999999999999999999999999 89999999999999999998 79999999864
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.6e-33 Score=256.65 Aligned_cols=255 Identities=25% Similarity=0.394 Sum_probs=232.0
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcce
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDF 283 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~ 283 (474)
+|.+.|.|+++.|...+|++|+.|++|+|||+.++++..++.||-..|..++++. .+|++++.|+.|+.||+...+ .
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk-v 227 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK-V 227 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh-h
Confidence 8999999999999999999999999999999999999999999999999999995 799999999999999999877 6
Q ss_pred EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEE
Q 011971 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (474)
Q Consensus 284 ~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iw 363 (474)
+..+.+|-+.|.+++.+|.-..|++|+.|.+++|||+++...+..+.+|..+|..+.+.|....++. |+ .|++|++|
T Consensus 228 IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit-~S--~D~tvrlW 304 (460)
T KOG0285|consen 228 IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVIT-GS--HDSTVRLW 304 (460)
T ss_pred HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEE-ec--CCceEEEe
Confidence 8899999999999999999999999999999999999999999999999999999999998775555 43 89999999
Q ss_pred ECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCC
Q 011971 364 NTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGD 442 (474)
Q Consensus 364 d~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~D 442 (474)
|++.|+....+. +...|.+++.+|....+++ + ....|+-|+++.+..+..+.+|+.-|+.++...|| ++++|+..
T Consensus 305 Dl~agkt~~tlt~hkksvral~lhP~e~~fAS--a-s~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dn 380 (460)
T KOG0285|consen 305 DLRAGKTMITLTHHKKSVRALCLHPKENLFAS--A-SPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDN 380 (460)
T ss_pred eeccCceeEeeecccceeeEEecCCchhhhhc--c-CCccceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCc
Confidence 999999887776 5567999999999998888 4 34579999999999999999999999999999887 78899999
Q ss_pred CcEEEEeCCCCCCCCCCCCCcccCCc
Q 011971 443 ETLRFWNVFPSPKSQNTDSEIGASSL 468 (474)
Q Consensus 443 g~I~iW~l~~~~~~~~~~~~~~~~s~ 468 (474)
|.|.+||...+...|..+......|+
T Consensus 381 g~~~fwdwksg~nyQ~~~t~vqpGSl 406 (460)
T KOG0285|consen 381 GSIMFWDWKSGHNYQRGQTIVQPGSL 406 (460)
T ss_pred eEEEEEecCcCcccccccccccCCcc
Confidence 99999999999888776544444444
No 22
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.2e-33 Score=278.11 Aligned_cols=264 Identities=19% Similarity=0.349 Sum_probs=226.4
Q ss_pred ceeeeeCCC-CcEEEEEc-CCeEEEEeCCCCCE------------------------------EEEEecCCCCCEEEEEE
Q 011971 169 YLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKV------------------------------TKLCDLGIDDSVCSVGW 216 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~~-d~~V~lwd~~~~~~------------------------------~~~~~~~~~~~V~~v~~ 216 (474)
.++|.++++ ..++|+|. |..|++|.+...++ ......+|.++|....|
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence 478999998 67888885 67999998873210 11112389999999999
Q ss_pred cCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCE
Q 011971 217 ANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEV 294 (474)
Q Consensus 217 sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 294 (474)
+|+.++|++++.|++|++|.+.+..++-.++||..+|+++.|+| -+|++++.|++.++|...... +.+.+.+|-+.|
T Consensus 460 sPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~-PlRifaghlsDV 538 (707)
T KOG0263|consen 460 SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK-PLRIFAGHLSDV 538 (707)
T ss_pred cccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC-chhhhccccccc
Confidence 99999999999999999999999999999999999999999995 799999999999999998755 688899999999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee
Q 011971 295 CGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (474)
Q Consensus 295 ~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~ 374 (474)
.|+.|+|+..++++|+.|.+|++||+.+|..+..|.+|.++|.+++|+|+|. .|++|+ .|+.|.+||+.++..+..+
T Consensus 539 ~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr-~LaSg~--ed~~I~iWDl~~~~~v~~l 615 (707)
T KOG0263|consen 539 DCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR-YLASGD--EDGLIKIWDLANGSLVKQL 615 (707)
T ss_pred ceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc-eEeecc--cCCcEEEEEcCCCcchhhh
Confidence 9999999999999999999999999999999999999999999999999987 666765 9999999999999887766
Q ss_pred c-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc------------------------eeEEEcCCCccEEEEEE
Q 011971 375 D-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS------------------------KLATLTGHTFRVLYLAI 429 (474)
Q Consensus 375 ~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~------------------------~~~~l~~h~~~V~~l~~ 429 (474)
. |.+.|+++.|+.+|..|++ |+.|++|++||+..-. .+..+.....+|..|.|
T Consensus 616 ~~Ht~ti~SlsFS~dg~vLas--gg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~F 693 (707)
T KOG0263|consen 616 KGHTGTIYSLSFSRDGNVLAS--GGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHF 693 (707)
T ss_pred hcccCceeEEEEecCCCEEEe--cCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEE
Confidence 5 6778999999999999999 8899999999985321 23444445556777777
Q ss_pred CCCCCEEEE
Q 011971 430 SPDGQTIVT 438 (474)
Q Consensus 430 spdg~~l~t 438 (474)
.-..-.|++
T Consensus 694 trrNl~L~~ 702 (707)
T KOG0263|consen 694 TRRNLLLAV 702 (707)
T ss_pred eccceeEEe
Confidence 655433433
No 23
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.3e-32 Score=240.03 Aligned_cols=273 Identities=24% Similarity=0.400 Sum_probs=224.1
Q ss_pred ceeeeeCCCCc--EEEE-EcCCeEEEEeCCCCC---EEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCC--C
Q 011971 169 YLNLVDWSSHN--VLAV-GLGNCVYLWNACSSK---VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR--C 240 (474)
Q Consensus 169 ~v~~l~~s~~~--~la~-~~d~~V~lwd~~~~~---~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~--~ 240 (474)
.+-.++|+|+. +||. |.|+.|++|+...+. ....+.-+|...|.+++|+|.|++||+|+.|+++.||.-.. .
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef 95 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF 95 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCce
Confidence 48899999963 4554 568899999998532 33333337999999999999999999999999999998664 4
Q ss_pred eEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCc--ceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEE
Q 011971 241 KRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE--DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (474)
Q Consensus 241 ~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~ 316 (474)
+++.+++||...|.|++|+ +++|+++++|+.|.||.+.... .+...+..|.+.|..+.|+|...+|++++.|++|+
T Consensus 96 ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk 175 (312)
T KOG0645|consen 96 ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIK 175 (312)
T ss_pred eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEE
Confidence 6889999999999999998 6899999999999999998544 46788999999999999999999999999999999
Q ss_pred EEECC---CCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEE
Q 011971 317 VWNQH---STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELV 393 (474)
Q Consensus 317 iwd~~---~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~ 393 (474)
+|+-. .-.+++++.+|...|.+++|++.|..|+. ++ .|++++||-..+. ....+..++..+.|. ...|+
T Consensus 176 ~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s-~s--dD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~Ia 247 (312)
T KOG0645|consen 176 VYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVS-CS--DDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVIA 247 (312)
T ss_pred EEeecCCCCeeEEEEecCccceEEEEEecCCCceEEE-ec--CCcceEeeeeccC---cchhcccceEeeeec--ccceE
Confidence 99876 23678899999999999999999975554 43 8999999986522 122355778899998 44566
Q ss_pred EEEecCCCeEEEEECCCC------ceeE-EEcCCCccEEEEEECCC-CCEEEEEeCCCcEEEEeCC
Q 011971 394 STHGYSQNQIIVWRYPTM------SKLA-TLTGHTFRVLYLAISPD-GQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 394 ~~~g~~dg~I~iwd~~~~------~~~~-~l~~h~~~V~~l~~spd-g~~l~t~s~Dg~I~iW~l~ 451 (474)
+ ++.|+.|++|.-... +.+. .-..|...|++++|.|. ...|++|+.||.|++|.+.
T Consensus 248 S--~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 248 S--GGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred e--ccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 6 778999999986532 2222 22368889999999994 6789999999999999874
No 24
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.7e-32 Score=245.97 Aligned_cols=274 Identities=21% Similarity=0.351 Sum_probs=235.3
Q ss_pred ceeeeeCCC-Cc-EEEEEcCCeEEEEeCCCCC-EEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE
Q 011971 169 YLNLVDWSS-HN-VLAVGLGNCVYLWNACSSK-VTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 169 ~v~~l~~s~-~~-~la~~~d~~V~lwd~~~~~-~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~ 245 (474)
-++.+.|+| +. ++++|.|..|.+|+..... -..... +|.++|..+.|.+|++.|++++.|.+|+.||+++++.++.
T Consensus 49 eI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk-gHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk 127 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLK-GHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK 127 (338)
T ss_pred eEEEEEECCCCCeEeecCCcceEEEEeccccccceeeec-cccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh
Confidence 478889998 44 4555579999999965432 222232 8999999999999999999999999999999999999999
Q ss_pred ecCCCCcEEEEEec---CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011971 246 MEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (474)
Q Consensus 246 ~~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~ 322 (474)
+++|..-|+++.-. +.++.+|+.||++++||+|... .++++ ..+.+++++.|..++..+.+|+-|+.|++||++.
T Consensus 128 ~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~t~-~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~ 205 (338)
T KOG0265|consen 128 HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIKTF-ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRK 205 (338)
T ss_pred hccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hhhcc-ccceeEEEEEecccccceeeccccCceeeecccc
Confidence 99999999999864 5789999999999999999876 34443 3466799999999999999999999999999999
Q ss_pred CcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc----eeeeecC-----CCCeEEEEEcCCCCeEE
Q 011971 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT----HLSCMDT-----GSQVCNLVWSKNVNELV 393 (474)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~----~~~~~~~-----~~~v~~l~~s~~~~~l~ 393 (474)
....+.+.+|...|+.+..+++|..++.-+ .|.++++||++-.. ++..+.. ......+.|+|++..+.
T Consensus 206 ~d~~~~lsGh~DtIt~lsls~~gs~llsns---Md~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ 282 (338)
T KOG0265|consen 206 NDGLYTLSGHADTITGLSLSRYGSFLLSNS---MDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKIT 282 (338)
T ss_pred CcceEEeecccCceeeEEeccCCCcccccc---ccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccc
Confidence 999999999999999999999998766643 89999999998643 3433331 23356788999999999
Q ss_pred EEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 011971 394 STHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 394 ~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l 450 (474)
+ |+.|..+++||..+...+..+.||.+.|.+++|+|...+|.+++.|.+|++=++
T Consensus 283 a--gs~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 283 A--GSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred c--ccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 8 999999999999999999999999999999999999999999999999987544
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.8e-32 Score=237.43 Aligned_cols=258 Identities=20% Similarity=0.323 Sum_probs=220.2
Q ss_pred CcceeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEE
Q 011971 167 DFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (474)
Q Consensus 167 d~~v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~ 244 (474)
|--||.+...| +..||++....|++||+.+++...+..+ +|...|++|.|..+|+++++|+.||+++|||+....+.+
T Consensus 40 dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR 119 (311)
T KOG0315|consen 40 DSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR 119 (311)
T ss_pred ccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccch
Confidence 44589999998 7899999999999999998876444433 788999999999999999999999999999999877666
Q ss_pred EecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011971 245 TMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (474)
Q Consensus 245 ~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~ 322 (474)
.++ |..+|+++..++ ..|++|..+|.|++||+.........+......|.++...|||.+|+.+.+.|.+++|++-+
T Consensus 120 ~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~ 198 (311)
T KOG0315|consen 120 NYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN 198 (311)
T ss_pred hcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence 665 779999999986 57999999999999999987633333444557899999999999999999999999999865
Q ss_pred C------cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ceeeeec-CCCCeEEEEEcCCCCeEEE
Q 011971 323 T------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLSCMD-TGSQVCNLVWSKNVNELVS 394 (474)
Q Consensus 323 ~------~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~-~~~~~~~-~~~~v~~l~~s~~~~~l~~ 394 (474)
. +++.+++.|.+.+..+.++|++++|++++ .|.+++||++.+. +....++ +...+...+||.+|.+|++
T Consensus 199 ~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s---sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvT 275 (311)
T KOG0315|consen 199 HQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS---SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVT 275 (311)
T ss_pred CCccccceEhhheecccceEEEEEECCCCcEEEeec---CCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEe
Confidence 4 56778889999999999999998655554 7999999999987 2223333 4457999999999999999
Q ss_pred EEecCCCeEEEEECCCCceeEEEcCCCccEEEEEEC
Q 011971 395 THGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAIS 430 (474)
Q Consensus 395 ~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s 430 (474)
|+.|+.+++|++..++.+..+.+|.....+++..
T Consensus 276 --assd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 276 --ASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred --cCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 8899999999999999999999999888888764
No 26
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.3e-33 Score=255.36 Aligned_cols=250 Identities=22% Similarity=0.317 Sum_probs=231.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcce
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF 283 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 283 (474)
+|..+|+.+-|+|+-..+++++.|++|++||..++++.+.+++|...|.+++|+ +.+|++++.|-.+++||..+...+
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c 185 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRC 185 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999997 689999999999999999987777
Q ss_pred EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEE
Q 011971 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (474)
Q Consensus 284 ~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iw 363 (474)
+..+.+|...|.+++|-|.|.++++++.|.+|+.|++.++.++.++.+|...|..++.+.||. |+++++ .|.+|++|
T Consensus 186 ~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt-i~As~s--~dqtl~vW 262 (406)
T KOG0295|consen 186 IKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT-IIASCS--NDQTLRVW 262 (406)
T ss_pred HHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee-EEEecC--CCceEEEE
Confidence 888999999999999999999999999999999999999999999999999999999999986 888876 89999999
Q ss_pred ECCCCceeeeec-CCCCeEEEEEcCCC---------------CeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEE
Q 011971 364 NTTTNTHLSCMD-TGSQVCNLVWSKNV---------------NELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYL 427 (474)
Q Consensus 364 d~~~~~~~~~~~-~~~~v~~l~~s~~~---------------~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l 427 (474)
-+.++++...+. +...|.+++|.|.. .++++ ++.|+.|++||+.++.++.++.+|...|..+
T Consensus 263 ~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s--~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~ 340 (406)
T KOG0295|consen 263 VVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS--GSRDKTIKIWDVSTGMCLFTLVGHDNWVRGV 340 (406)
T ss_pred EeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe--ecccceEEEEeccCCeEEEEEecccceeeee
Confidence 999998877665 66788999987642 35666 8899999999999999999999999999999
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCCCCCCCC
Q 011971 428 AISPDGQTIVTGAGDETLRFWNVFPSPKSQNTD 460 (474)
Q Consensus 428 ~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~~ 460 (474)
+|+|.|+||+++..|++|++||+.+.......+
T Consensus 341 af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 341 AFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred EEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 999999999999999999999999988776543
No 27
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5e-31 Score=253.28 Aligned_cols=282 Identities=18% Similarity=0.284 Sum_probs=237.0
Q ss_pred ceeeeeCCC--CcEEEEEcCCeEEEEeCCCCCEEEEEec--CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEE
Q 011971 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDL--GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (474)
Q Consensus 169 ~v~~l~~s~--~~~la~~~d~~V~lwd~~~~~~~~~~~~--~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~ 244 (474)
+|+|+.|+| ..++++|.|+.|++||-.+++.+..+.- +|.+.|.+++|+||+..+++++.|.+++|||+.+.++++
T Consensus 192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~ 271 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS 271 (603)
T ss_pred ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence 699999999 4677788999999999999998887752 789999999999999999999999999999999999999
Q ss_pred EecCCC---CcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011971 245 TMEGHR---LRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (474)
Q Consensus 245 ~~~~h~---~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~ 321 (474)
++.... ..-..+.|..+.|++.+.+|.|.+++..... ....+.+|...|+++..++++.+|++|+.||.|.-||..
T Consensus 272 t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~ 350 (603)
T KOG0318|consen 272 TWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS-VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSG 350 (603)
T ss_pred EeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCC-hhheecccccceeEEEEcCCCCEEEeeccCceEEEEecC
Confidence 886332 2334455778999999999999999999888 788999999999999999999999999999999999976
Q ss_pred CCcce-----------E--------------------E------------------------------------------
Q 011971 322 STQPV-----------L--------------------K------------------------------------------ 328 (474)
Q Consensus 322 ~~~~~-----------~--------------------~------------------------------------------ 328 (474)
++..- . .
T Consensus 351 ~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~ 430 (603)
T KOG0318|consen 351 SGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVL 430 (603)
T ss_pred CccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEE
Confidence 43200 0 0
Q ss_pred EccC--------CCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce---eeeecCCCCeEEEEEcCCCCeEEEEEe
Q 011971 329 YCEH--------TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH---LSCMDTGSQVCNLVWSKNVNELVSTHG 397 (474)
Q Consensus 329 ~~~h--------~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~---~~~~~~~~~v~~l~~s~~~~~l~~~~g 397 (474)
+..+ .-...+++++|++. .++.|| +|++|++|.+..+.. ...+.+...|+.++|||++.+|++ +
T Consensus 431 l~~~~~~~~~~~~y~~s~vAv~~~~~-~vaVGG--~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~--~ 505 (603)
T KOG0318|consen 431 LQDQTKVSSIPIGYESSAVAVSPDGS-EVAVGG--QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAA--G 505 (603)
T ss_pred EecCCcceeeccccccceEEEcCCCC-EEEEec--ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEE--e
Confidence 0000 11235778888876 566665 899999999987653 345678899999999999999999 8
Q ss_pred cCCCeEEEEECCCCceeE-EEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 011971 398 YSQNQIIVWRYPTMSKLA-TLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKS 456 (474)
Q Consensus 398 ~~dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~ 456 (474)
...+.+.+||..+.+... .+.-|+.+|.+|+|+|+..++|||+-|-.|.||++....+.
T Consensus 506 Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 506 DASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred ccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence 899999999999877633 33349999999999999999999999999999999977655
No 28
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.9e-31 Score=238.47 Aligned_cols=248 Identities=17% Similarity=0.347 Sum_probs=226.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCC--c
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQ--E 281 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~--~ 281 (474)
+|.+.|.++.|++|.++|++++.||.+.|||.-+...++.+.-....|..++|+| +.+++|+-|....||++.+. +
T Consensus 53 GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~ 132 (343)
T KOG0286|consen 53 GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE 132 (343)
T ss_pred ccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccc
Confidence 8999999999999999999999999999999999999999998999999999985 89999999999999999865 2
Q ss_pred ---ceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCC
Q 011971 282 ---DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR 358 (474)
Q Consensus 282 ---~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~ 358 (474)
.....+.+|.+.+.++.|-+ ..+|++++.|.++.+||+++++.+..|.+|.+.|.++.++|.....+++|+ -|+
T Consensus 133 g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~--cD~ 209 (343)
T KOG0286|consen 133 GNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG--CDK 209 (343)
T ss_pred ccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc--ccc
Confidence 34567899999999999977 568999999999999999999999999999999999999995555788876 899
Q ss_pred eEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcC--CCccEEEEEECCCCCE
Q 011971 359 CIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTG--HTFRVLYLAISPDGQT 435 (474)
Q Consensus 359 ~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~ 435 (474)
..++||++.+.+++.+. |.+.|..+.|.|+|..+++ |+.|+..++||++..+.+..+.. -..+|++++||-.|++
T Consensus 210 ~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat--GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRl 287 (343)
T KOG0286|consen 210 SAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT--GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRL 287 (343)
T ss_pred ceeeeeccCcceeEeecccccccceEEEccCCCeeee--cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccE
Confidence 99999999999999987 6788999999999999999 99999999999999999888863 3457999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCC
Q 011971 436 IVTGAGDETLRFWNVFPSPKSQN 458 (474)
Q Consensus 436 l~t~s~Dg~I~iW~l~~~~~~~~ 458 (474)
|++|..|.++.+||.-.++....
T Consensus 288 Lfagy~d~~c~vWDtlk~e~vg~ 310 (343)
T KOG0286|consen 288 LFAGYDDFTCNVWDTLKGERVGV 310 (343)
T ss_pred EEeeecCCceeEeeccccceEEE
Confidence 99999999999999987766543
No 29
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-31 Score=237.45 Aligned_cols=246 Identities=20% Similarity=0.313 Sum_probs=214.0
Q ss_pred CCCCCEEEEEEcCC-CCEEEEEeCCCcEEEecCC-----CCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEEC
Q 011971 206 GIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDAS-----RCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDI 277 (474)
Q Consensus 206 ~~~~~V~~v~~sp~-g~~la~gs~dg~I~iwd~~-----~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~ 277 (474)
+|++.|+.++..+. .+.+++++.|..+.+|++. .|..++.+.||...|..+..+ +++.++++.|+++++||+
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEe
Confidence 89999999999987 4688899999999999875 466789999999999999987 689999999999999999
Q ss_pred cCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccC--CCcEEEEEECCCC-CcEEEEecC
Q 011971 278 RAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH--TAAVKAIAWSPHL-HGLLASGGG 354 (474)
Q Consensus 278 ~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h--~~~V~~l~~sp~~-~~ll~sg~G 354 (474)
.+++ ....+.+|...|.+++|++|.+++++|+.|.+|++|+.... +..++..+ ...|.|+.|+|.. .-++++++
T Consensus 93 ~~g~-~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s- 169 (315)
T KOG0279|consen 93 ATGE-STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSAS- 169 (315)
T ss_pred cCCc-EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc-
Confidence 9985 68899999999999999999999999999999999998754 44455443 7899999999985 44666665
Q ss_pred CCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCC
Q 011971 355 TADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDG 433 (474)
Q Consensus 355 t~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 433 (474)
.|+++++||+++.+....+. +...++.+.+||||...++ |+.||.+.+||+..++.+..+. |...|.+++|+|+.
T Consensus 170 -~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcas--Ggkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnr 245 (315)
T KOG0279|consen 170 -WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCAS--GGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNR 245 (315)
T ss_pred -CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEec--CCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCc
Confidence 99999999999988877665 5677999999999999999 9999999999999999987764 78899999999997
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCCC
Q 011971 434 QTIVTGAGDETLRFWNVFPSPKSQNT 459 (474)
Q Consensus 434 ~~l~t~s~Dg~I~iW~l~~~~~~~~~ 459 (474)
..|+.+ .+..|+|||+..+......
T Consensus 246 ywL~~a-t~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 246 YWLCAA-TATSIKIWDLESKAVVEEL 270 (315)
T ss_pred eeEeec-cCCceEEEeccchhhhhhc
Confidence 666655 5567999999998766554
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.9e-32 Score=269.48 Aligned_cols=275 Identities=24% Similarity=0.347 Sum_probs=241.1
Q ss_pred eeeeCCC-CcEEEEEc-CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC----eEEE
Q 011971 171 NLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC----KRVR 244 (474)
Q Consensus 171 ~~l~~s~-~~~la~~~-d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~----~~~~ 244 (474)
.+.-|++ .+.++++. .+.+++|+..+.... ++ .+|++.|.++....+|.+|++|+.|.++++|.++++ -++.
T Consensus 328 Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii-~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a 405 (775)
T KOG0319|consen 328 DMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-II-PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA 405 (775)
T ss_pred eeeecCCccceEEEEeCCCceEEEecCCCceE-EE-eCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh
Confidence 3445566 56677765 579999999887776 33 399999999996667899999999999999977443 2455
Q ss_pred EecCCCCcEEEEEec---CCEEEEEeCCCcEEEEECcCCcc----eE----eeecCcCCCEEEEEEecCCCEEEEEeCCC
Q 011971 245 TMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQED----FV----SKLSGHKSEVCGLKWSYDNRELASGGNDN 313 (474)
Q Consensus 245 ~~~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~----~~----~~~~~h~~~V~~l~~spd~~~lasg~~Dg 313 (474)
...+|...|++++++ ...|+++|.|+++++|++...+. .. .....|...|++++.+|+..++|+|+.|.
T Consensus 406 ~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDk 485 (775)
T KOG0319|consen 406 QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDK 485 (775)
T ss_pred hhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccccc
Confidence 567999999999997 48999999999999999986221 11 13457999999999999999999999999
Q ss_pred cEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeE
Q 011971 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNEL 392 (474)
Q Consensus 314 ~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l 392 (474)
+.+||+++......++.+|...|.++.|+|... ++++++ .|++|+||.+.++.++.++. |.+.|..+.|-.+++.|
T Consensus 486 taKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~S--gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~ql 562 (775)
T KOG0319|consen 486 TAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQ-LLATCS--GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQL 562 (775)
T ss_pred ceeeecccCceEEEEeeCCccceEEEEeccccc-eeEecc--CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEE
Confidence 999999999999999999999999999999865 777776 69999999999999999999 78889999999999999
Q ss_pred EEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 393 VSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 393 ~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
++ ++.||-|++|++.+.+++.++..|..+|++++.++++..++||+.||.|.+|.=.+
T Consensus 563 iS--~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 563 IS--AGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred Ee--ccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 99 77999999999999999999999999999999999999999999999999997544
No 31
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.4e-31 Score=260.97 Aligned_cols=279 Identities=21% Similarity=0.402 Sum_probs=241.7
Q ss_pred eeeeeCCC--CcEEEEEcCCeEEEEeCC------------------------CCC------EEE--EEec-CCCCCEEEE
Q 011971 170 LNLVDWSS--HNVLAVGLGNCVYLWNAC------------------------SSK------VTK--LCDL-GIDDSVCSV 214 (474)
Q Consensus 170 v~~l~~s~--~~~la~~~d~~V~lwd~~------------------------~~~------~~~--~~~~-~~~~~V~~v 214 (474)
|..+-|.. ..+++++.||.+.+|... ..+ ..+ ..-+ .....|++.
T Consensus 192 VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa 271 (893)
T KOG0291|consen 192 VVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAA 271 (893)
T ss_pred eEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeee
Confidence 44444443 678999999999999765 111 000 1111 223789999
Q ss_pred EEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCC-CcEEEEECcCCcceEeeecCcC
Q 011971 215 GWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRD-KSILQRDIRAQEDFVSKLSGHK 291 (474)
Q Consensus 215 ~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~d-g~I~iwd~~~~~~~~~~~~~h~ 291 (474)
+|++..+.||+|-..|...+|++....+++.+.-...+|..++|+ ++.|+.|+.. |.+.||+..... .+.+.++|.
T Consensus 272 ~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-YVlKQQgH~ 350 (893)
T KOG0291|consen 272 AFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-YVLKQQGHS 350 (893)
T ss_pred eccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc-eeeeccccc
Confidence 999999999999999999999999999999999888999999999 8999988765 899999998876 788889999
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee
Q 011971 292 SEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL 371 (474)
Q Consensus 292 ~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~ 371 (474)
..+++++++|||+++|+|+.||.|+|||...+-+..+|..|.+.|+++.|+..|+.++.++ .||+|+.||+......
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssS---LDGtVRAwDlkRYrNf 427 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS---LDGTVRAWDLKRYRNF 427 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEee---cCCeEEeeeeccccee
Confidence 9999999999999999999999999999999999999999999999999999998666654 8999999999999999
Q ss_pred eeecCCCC--eEEEEEcCCCCeEEEEEecCCC-eEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEE
Q 011971 372 SCMDTGSQ--VCNLVWSKNVNELVSTHGYSQN-QIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFW 448 (474)
Q Consensus 372 ~~~~~~~~--v~~l~~s~~~~~l~~~~g~~dg-~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW 448 (474)
+++....+ ..+++..|.|..+.+ |..|. .|.||++.+|+.+..+.||.++|.+++|+|+|..|++++.|.+||+|
T Consensus 428 RTft~P~p~QfscvavD~sGelV~A--G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 428 RTFTSPEPIQFSCVAVDPSGELVCA--GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW 505 (893)
T ss_pred eeecCCCceeeeEEEEcCCCCEEEe--eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence 99886654 667777777877766 65554 89999999999999999999999999999999999999999999999
Q ss_pred eCCCCC
Q 011971 449 NVFPSP 454 (474)
Q Consensus 449 ~l~~~~ 454 (474)
|++...
T Consensus 506 ~if~s~ 511 (893)
T KOG0291|consen 506 DIFSSS 511 (893)
T ss_pred EeeccC
Confidence 999773
No 32
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.2e-30 Score=282.14 Aligned_cols=277 Identities=17% Similarity=0.332 Sum_probs=224.6
Q ss_pred CCcceeeeeCCC-CcEE-EEEcCCeEEEEeCCCC----CE--EEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEec
Q 011971 166 DDFYLNLVDWSS-HNVL-AVGLGNCVYLWNACSS----KV--TKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWD 236 (474)
Q Consensus 166 ~d~~v~~l~~s~-~~~l-a~~~d~~V~lwd~~~~----~~--~~~~~~~~~~~V~~v~~sp-~g~~la~gs~dg~I~iwd 236 (474)
....+.+++|++ ++++ ++|.|+.|+||+.... .. .....+.+...|.+++|++ ++.+|++|+.||+|+|||
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 455699999998 5555 5556899999997542 11 1112234457899999987 478999999999999999
Q ss_pred CCCCeEEEEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEe-cCCCEEEEEeCC
Q 011971 237 ASRCKRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWS-YDNRELASGGND 312 (474)
Q Consensus 237 ~~~~~~~~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s-pd~~~lasg~~D 312 (474)
+.+++.+..+.+|...|.+++|++ .+|++|+.||.|++||+++.. .+..+..+ ..|+++.|+ +++.+|++|+.|
T Consensus 562 ~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~~~~~-~~v~~v~~~~~~g~~latgs~d 639 (793)
T PLN00181 562 VARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-SIGTIKTK-ANICCVQFPSESGRSLAFGSAD 639 (793)
T ss_pred CCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEEEecC-CCeEEEEEeCCCCCEEEEEeCC
Confidence 999999999999999999999973 689999999999999998776 45555544 679999995 579999999999
Q ss_pred CcEEEEECCCCc-ceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC------ceeeeec-CCCCeEEEE
Q 011971 313 NRLFVWNQHSTQ-PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN------THLSCMD-TGSQVCNLV 384 (474)
Q Consensus 313 g~v~iwd~~~~~-~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~------~~~~~~~-~~~~v~~l~ 384 (474)
|.|++||+++.+ ++..+.+|...|.++.|. ++. .+++++ .|+.|++||+..+ ..+..+. +...+..+.
T Consensus 640 g~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s--~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 640 HKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSS--TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred CeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEE--CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999998765 567788999999999997 444 555555 7999999999753 4455554 456688999
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCCCceeEEE-------------cCCCccEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 011971 385 WSKNVNELVSTHGYSQNQIIVWRYPTMSKLATL-------------TGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 385 ~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l-------------~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l 450 (474)
|++++.+|++ |+.|+.|++|+......+..+ ..|...|.+++|+|++..|++|+.||.|++|++
T Consensus 716 ~s~~~~~las--gs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 716 LSVSDGYIAT--GSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCEEEE--EeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999999998 889999999998665443222 234567999999999999999999999999997
No 33
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.3e-31 Score=269.55 Aligned_cols=251 Identities=27% Similarity=0.423 Sum_probs=223.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe--EEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcc
Q 011971 207 IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK--RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED 282 (474)
Q Consensus 207 ~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~ 282 (474)
+...|+++.|+++|++|++++.++.+++|+....+ ..+.+.+|...|.+++|+ +.++++++.|++|++||+.....
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 47899999999999999999999999999998777 777888999999999998 47999999999999999966656
Q ss_pred eEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEE
Q 011971 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (474)
Q Consensus 283 ~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~i 362 (474)
.+..+.+|...|++++|+|+++.+++|+.|++|+|||+++++++..+.+|...|.+++|++++.. +++++ .|+.|++
T Consensus 238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~-l~s~s--~d~~i~v 314 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNL-LVSAS--YDGTIRV 314 (456)
T ss_pred EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCE-EEEcC--CCccEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999984 44444 7999999
Q ss_pred EECCCCc--eeeeecC-C-C-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCcc---EEEEEECCCCC
Q 011971 363 WNTTTNT--HLSCMDT-G-S-QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFR---VLYLAISPDGQ 434 (474)
Q Consensus 363 wd~~~~~--~~~~~~~-~-~-~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~---V~~l~~spdg~ 434 (474)
||+.++. ++..+.. . . .+..++|+|++.++++ ++.|+.+++||+..+..+..+.+|... +.+..+++.|.
T Consensus 315 wd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~--~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (456)
T KOG0266|consen 315 WDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS--ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK 392 (456)
T ss_pred EECCCCceeeeecccCCCCCCceeEEEECCCCcEEEE--ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCC
Confidence 9999999 4455442 2 2 5899999999999999 889999999999999999999999874 44455678999
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 011971 435 TIVTGAGDETLRFWNVFPSPKSQNTDSE 462 (474)
Q Consensus 435 ~l~t~s~Dg~I~iW~l~~~~~~~~~~~~ 462 (474)
++++|+.|+.|++|++.++...+..+..
T Consensus 393 ~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 393 LIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred eEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 9999999999999999987766655444
No 34
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4e-32 Score=238.96 Aligned_cols=279 Identities=20% Similarity=0.323 Sum_probs=252.4
Q ss_pred ceeeeeCCC----Cc-EEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEE
Q 011971 169 YLNLVDWSS----HN-VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (474)
Q Consensus 169 ~v~~l~~s~----~~-~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~ 243 (474)
.|..++|++ +. +++++.|+.-.+-+-++|..+-.++ +|.+.|.+..+..+....|+++.|-+-+|||.-++..+
T Consensus 16 pvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfe-ghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel 94 (334)
T KOG0278|consen 16 PVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFE-GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL 94 (334)
T ss_pred ceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeee-ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh
Confidence 366677775 33 4555568999999999999999886 99999999999999888999999999999999999999
Q ss_pred EEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011971 244 RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (474)
Q Consensus 244 ~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~ 321 (474)
..+. |..-|.+++|+ .++|++|+.+..++|||++..+.+...+.+|.+.|..+.|....+.+++...|++|++||.+
T Consensus 95 hsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 95 HSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR 173 (334)
T ss_pred hhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEec
Confidence 8887 88899999998 47999999999999999999888888999999999999999999999999999999999999
Q ss_pred CCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCC
Q 011971 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQN 401 (474)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg 401 (474)
++..++.+ ....+|+++.++++|..+.++ ..+.|.+||..+...+..++....|.+..++|+...+++ |++|.
T Consensus 174 Tgt~v~sL-~~~s~VtSlEvs~dG~ilTia----~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVa--Gged~ 246 (334)
T KOG0278|consen 174 TGTEVQSL-EFNSPVTSLEVSQDGRILTIA----YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVA--GGEDF 246 (334)
T ss_pred cCcEEEEE-ecCCCCcceeeccCCCEEEEe----cCceeEEeccccccceeeccCccccccccccCCCceEEe--cCcce
Confidence 99999988 557789999999999854443 468899999999999999999999999999999988877 99999
Q ss_pred eEEEEECCCCceeEEE-cCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 011971 402 QIIVWRYPTMSKLATL-TGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKS 456 (474)
Q Consensus 402 ~I~iwd~~~~~~~~~l-~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~ 456 (474)
.++.||+.+++.+..+ ++|.++|.++.|+|||..-++|+.||+|++|....+...
T Consensus 247 ~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 247 KVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred EEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999986 899999999999999999999999999999999887655
No 35
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=7.1e-32 Score=257.05 Aligned_cols=273 Identities=18% Similarity=0.342 Sum_probs=233.1
Q ss_pred ceeeeeCCC--C-cEEEEEcCCeEEEEeCCC-CCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEE
Q 011971 169 YLNLVDWSS--H-NVLAVGLGNCVYLWNACS-SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (474)
Q Consensus 169 ~v~~l~~s~--~-~~la~~~d~~V~lwd~~~-~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~ 244 (474)
-++++.|.| . -+|++|.|+.|+||++-. +.+++.+ .+|..+|.+++|+++|..+++++.|+.|++||+++|+++.
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf-~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~ 294 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTF-KGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLS 294 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEEecCcceehhh-hcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEE
Confidence 488999998 3 456666799999999877 6666666 4999999999999999999999999999999999999999
Q ss_pred EecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011971 245 TMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (474)
Q Consensus 245 ~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~ 321 (474)
.+. ....++|+.|++ +.|++|+.|+.|+.||+++++ +++.+..|-+.|..+.|-++|+++++.+.|+.++||+.+
T Consensus 295 ~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~ 372 (503)
T KOG0282|consen 295 RFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENR 372 (503)
T ss_pred EEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcC
Confidence 886 345688999974 799999999999999999988 688889999999999999999999999999999999999
Q ss_pred CCcceEEEc-cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee---e---cCCCCeEEEEEcCCCCeEEE
Q 011971 322 STQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC---M---DTGSQVCNLVWSKNVNELVS 394 (474)
Q Consensus 322 ~~~~~~~~~-~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~---~---~~~~~v~~l~~s~~~~~l~~ 394 (474)
...++..+. .+.....++..+|.++.+++= +.|..|.+|.+...-.+.. + ...+.-+.+.|||||.+|++
T Consensus 373 ~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQ---s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~S 449 (503)
T KOG0282|consen 373 IPVPIKNIADPEMHTMPCLTLHPNGKWFAAQ---SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCS 449 (503)
T ss_pred CCccchhhcchhhccCcceecCCCCCeehhh---ccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEe
Confidence 876655443 234456789999999865553 3899999998654322221 1 13455788999999999999
Q ss_pred EEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCC-CCEEEEEeCCCcEEEEe
Q 011971 395 THGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPD-GQTIVTGAGDETLRFWN 449 (474)
Q Consensus 395 ~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd-g~~l~t~s~Dg~I~iW~ 449 (474)
|..+|.+.+||..+-+.+..+++|++.+..+.|+|. ...+||++.||.|++|+
T Consensus 450 --GdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 450 --GDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred --ecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999999999999994 45799999999999996
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-30 Score=254.89 Aligned_cols=278 Identities=19% Similarity=0.298 Sum_probs=248.9
Q ss_pred ceeeeeCCC-Cc-EEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEe
Q 011971 169 YLNLVDWSS-HN-VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (474)
Q Consensus 169 ~v~~l~~s~-~~-~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~ 246 (474)
.|.+++++| .. +|++-..|.|.|||.++...++.+++ .+-+|.+..|-...+++++|+.|..|+||+.++++.+..+
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV-~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F 93 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV-SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF 93 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee-cccchhhheeeeccceEEEecCCceEEEEecccceeeEEe
Confidence 488999999 44 44444699999999999999998875 4679999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCC
Q 011971 247 EGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHST 323 (474)
Q Consensus 247 ~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~lasg~~Dg~v~iwd~~~~ 323 (474)
..|..-|.+++.+| .++++++.|-+|++||.+..-.+.+.+.+|...|.+++|+| |.+.+|+++-|++|+||.+.+.
T Consensus 94 eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~ 173 (794)
T KOG0276|consen 94 EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP 173 (794)
T ss_pred eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC
Confidence 99999999999997 68999999999999999988888999999999999999999 6789999999999999999999
Q ss_pred cceEEEccCCCcEEEEEECCCCC-cEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCC
Q 011971 324 QPVLKYCEHTAAVKAIAWSPHLH-GLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQN 401 (474)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~-~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg 401 (474)
.+..++.+|...|+|+.+-+-|. -.+++|+ .|..|++||..+..|++++. |...|..+.|+|.-..+++ |++||
T Consensus 174 ~~nfTl~gHekGVN~Vdyy~~gdkpylIsga--DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis--gsEDG 249 (794)
T KOG0276|consen 174 HPNFTLEGHEKGVNCVDYYTGGDKPYLISGA--DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS--GSEDG 249 (794)
T ss_pred CCceeeeccccCcceEEeccCCCcceEEecC--CCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE--ecCCc
Confidence 99999999999999999988653 3566655 89999999999999999998 6677999999999999999 99999
Q ss_pred eEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 402 QIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 402 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
+++||+..+.+...++.-.-.+|++++-.+.+..++.|...|.|. .++..
T Consensus 250 TvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgr 299 (794)
T KOG0276|consen 250 TVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGR 299 (794)
T ss_pred cEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccC
Confidence 999999999988888887788999999999888888887666654 44443
No 37
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-31 Score=232.59 Aligned_cols=276 Identities=22% Similarity=0.363 Sum_probs=228.6
Q ss_pred eeeeCCC--CcEEEEE--------cCCeEEEEeCC-CCCEEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEecCC
Q 011971 171 NLVDWSS--HNVLAVG--------LGNCVYLWNAC-SSKVTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIWDAS 238 (474)
Q Consensus 171 ~~l~~s~--~~~la~~--------~d~~V~lwd~~-~~~~~~~~~~~~~~~V~~v~~sp~g-~~la~gs~dg~I~iwd~~ 238 (474)
..+.||| .+.||++ ..|.++|-+.. .+.+.....+.-.+.+..++|++.. +.+++++.||+++|||..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 3566776 4444432 35799999996 4444444444667899999999864 688889999999999964
Q ss_pred C-CeEEEEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec-CCCEEEEEeCCC
Q 011971 239 R-CKRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDN 313 (474)
Q Consensus 239 ~-~~~~~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~lasg~~Dg 313 (474)
. ...++.++.|...|.++.|+. ..+++++.|++|++|+...+. .+.++.+|...|...+|+| ..+.+++++.|+
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~-Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN-SVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-ceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 3 457888999999999999983 678888999999999998776 5888999999999999999 678999999999
Q ss_pred cEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-eeeeec-CCCCeEEEEEcCCCCe
Q 011971 314 RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-HLSCMD-TGSQVCNLVWSKNVNE 391 (474)
Q Consensus 314 ~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~-~~~~~~-~~~~v~~l~~s~~~~~ 391 (474)
++++||++.......+..|...+.++.|+...++++++|+ .|+.|+.||+++-+ ++.++. ++-.|..+.|||...-
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~--vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG--VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHAS 248 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC--CCceEEEEehhhccccceeecCCceEEEEEecCcchhh
Confidence 9999999875555558899999999999999999999987 89999999998754 455554 5567999999998776
Q ss_pred EEEEEecCCCeEEEEECCCC-ceeEEEcCCCccEEEEEECC-CCCEEEEEeCCCcEEEEeC
Q 011971 392 LVSTHGYSQNQIIVWRYPTM-SKLATLTGHTFRVLYLAISP-DGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 392 l~~~~g~~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~sp-dg~~l~t~s~Dg~I~iW~l 450 (474)
++.+ .+-|-+++|||.... ..+.+...|+.-|..+.||+ ++.++++++.|+.++||+-
T Consensus 249 lLaS-asYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 249 LLAS-ASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred Hhhh-ccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 6654 668999999999844 45556677999999999998 6779999999999999983
No 38
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=4.1e-30 Score=224.54 Aligned_cols=271 Identities=20% Similarity=0.328 Sum_probs=233.2
Q ss_pred ceeeeeCCC--CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEe
Q 011971 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (474)
Q Consensus 169 ~v~~l~~s~--~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~ 246 (474)
.++.+.|+- +..|++|.|.+|++||...+.+++.+. +|...|..++.+.|...+++|+.|..|++||+++++.++.+
T Consensus 19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~ 97 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS-GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF 97 (307)
T ss_pred ceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec-CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec
Confidence 488888886 567888899999999999999999885 89999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCc-ceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011971 247 EGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQE-DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (474)
Q Consensus 247 ~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~ 323 (474)
.+|.+.|+.+.|+. ..+++|+.|..+++||.+... ++++.+......|.++..+ +..+++|+.||+++.||++.|
T Consensus 98 rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G 175 (307)
T KOG0316|consen 98 RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKG 175 (307)
T ss_pred ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecc
Confidence 99999999999994 799999999999999999754 4678888888999999875 558999999999999999999
Q ss_pred cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-CC--eEEEEEcCCCCeEEEEEecCC
Q 011971 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-SQ--VCNLVWSKNVNELVSTHGYSQ 400 (474)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~-~~--v~~l~~s~~~~~l~~~~g~~d 400 (474)
+..... -..+|+++.|+++++..|++. .|++|++.|-.+|+.+..+... +. -...+++.....+++ |++|
T Consensus 176 ~l~sDy--~g~pit~vs~s~d~nc~La~~---l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~s--gSED 248 (307)
T KOG0316|consen 176 TLSSDY--FGHPITSVSFSKDGNCSLASS---LDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFS--GSED 248 (307)
T ss_pred eeehhh--cCCcceeEEecCCCCEEEEee---ccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEe--ccCC
Confidence 866554 345899999999999888865 7999999999999999887633 32 334556666666666 9999
Q ss_pred CeEEEEECCCCceeEEEcCCCcc-EEEEEECCCCCEEEEEeCCCcEEEEeC
Q 011971 401 NQIIVWRYPTMSKLATLTGHTFR-VLYLAISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 401 g~I~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~t~s~Dg~I~iW~l 450 (474)
|.|++||+.....+..+..|... |.+++++|.-..|+++.. +.+.+|.-
T Consensus 249 G~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~ 298 (307)
T KOG0316|consen 249 GKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWYQ 298 (307)
T ss_pred ceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceeceee
Confidence 99999999999999999988887 899999998777777754 45666653
No 39
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.98 E-value=4.8e-30 Score=262.58 Aligned_cols=281 Identities=21% Similarity=0.327 Sum_probs=250.1
Q ss_pred CCcceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE
Q 011971 166 DDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 166 ~d~~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~ 245 (474)
++..+.+..|..+.+++.+.++.|++|+..++..+..--.+|.+.|.++++...+.+|++|+.|.+++|||..++++...
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~ 286 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS 286 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE
Confidence 35557778888888888888999999999999988873349999999999998888999999999999999999999999
Q ss_pred ecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcc
Q 011971 246 MEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP 325 (474)
Q Consensus 246 ~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~ 325 (474)
+.+|...|.++...+..+++|+.|.+|++|++.++. .+..+.+|...|+++..+ +.++++|+.|++|+|||+.++++
T Consensus 287 l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~c 363 (537)
T KOG0274|consen 287 LQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKC 363 (537)
T ss_pred ecCCCceEEEEEccCceEeeccCCceEEEEeccCcc-eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhcee
Confidence 999999999999999999999999999999999877 678888899999999987 78999999999999999999999
Q ss_pred eEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEE
Q 011971 326 VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQII 404 (474)
Q Consensus 326 ~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 404 (474)
+..+.+|...|+++.+.+. ..+++|+ .|+.|++||+.+. +++..+.++..+. -.....++.|++ +..|+.|+
T Consensus 364 l~sl~gH~~~V~sl~~~~~--~~~~Sgs--~D~~IkvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs--~~aD~~Ik 436 (537)
T KOG0274|consen 364 LKSLSGHTGRVYSLIVDSE--NRLLSGS--LDTTIKVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVS--SSADGTIK 436 (537)
T ss_pred eeeecCCcceEEEEEecCc--ceEEeee--eccceEeecCCchhhhhhhhcCCcccc-cccccccceeEe--ccccccEE
Confidence 9999999999999988875 4677766 8999999999999 8888887665544 334456778888 88999999
Q ss_pred EEECCCCceeEEEcC-CCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 011971 405 VWRYPTMSKLATLTG-HTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQN 458 (474)
Q Consensus 405 iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~ 458 (474)
+||..+++++..+.+ |...|..+++. ...+++++.||++++||+..+.....
T Consensus 437 ~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 437 LWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRT 489 (537)
T ss_pred EeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhh
Confidence 999999999999998 77889999886 45788999999999999999887653
No 40
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.9e-30 Score=226.64 Aligned_cols=249 Identities=20% Similarity=0.296 Sum_probs=222.6
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcce
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF 283 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 283 (474)
.+.++|.++.|+-+|+|.++++.|.+|++|+...+.+++++.+|...|..++.+ +..|++|+.|..|.+||+.+++ .
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk-v 93 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK-V 93 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe-e
Confidence 678999999999999999999999999999999999999999999999998875 6799999999999999999988 6
Q ss_pred EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC--CcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEE
Q 011971 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS--TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIR 361 (474)
Q Consensus 284 ~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~--~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~ 361 (474)
...+.+|...|+.+.|+.+...+++|+.|.++++||.++ .+|++.+......|.++....+ .+++|+ .||+++
T Consensus 94 ~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h---eIvaGS--~DGtvR 168 (307)
T KOG0316|consen 94 DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH---EIVAGS--VDGTVR 168 (307)
T ss_pred eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc---EEEeec--cCCcEE
Confidence 899999999999999999999999999999999999875 5788999888899999999865 566665 999999
Q ss_pred EEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccE--EEEEECCCCCEEEEE
Q 011971 362 FWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRV--LYLAISPDGQTIVTG 439 (474)
Q Consensus 362 iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V--~~l~~spdg~~l~t~ 439 (474)
.||++.|...... .+.+|+++.|+++++..++ +.-++.|++.|-.+++.+..++||...= ...+++.....+++|
T Consensus 169 tydiR~G~l~sDy-~g~pit~vs~s~d~nc~La--~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sg 245 (307)
T KOG0316|consen 169 TYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLA--SSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSG 245 (307)
T ss_pred EEEeecceeehhh-cCCcceeEEecCCCCEEEE--eeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEec
Confidence 9999998765443 6789999999999999999 8899999999999999999999997643 455677777899999
Q ss_pred eCCCcEEEEeCCCCCCCCCCCCCc
Q 011971 440 AGDETLRFWNVFPSPKSQNTDSEI 463 (474)
Q Consensus 440 s~Dg~I~iW~l~~~~~~~~~~~~~ 463 (474)
++||.+++||+............+
T Consensus 246 SEDG~Vy~wdLvd~~~~sk~~~~~ 269 (307)
T KOG0316|consen 246 SEDGKVYFWDLVDETQISKLSVVS 269 (307)
T ss_pred cCCceEEEEEeccceeeeeeccCC
Confidence 999999999999887665554433
No 41
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.1e-30 Score=256.78 Aligned_cols=285 Identities=20% Similarity=0.328 Sum_probs=250.0
Q ss_pred ccCCCCCCCcceeeeeCCCCc-EEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 011971 159 LDAPALQDDFYLNLVDWSSHN-VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA 237 (474)
Q Consensus 159 l~ap~~~~d~~v~~l~~s~~~-~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~ 237 (474)
++-++.+.| |..++++.++ +++.|.++.|.+|+..+.+.++.+. .+.+.+..|.|.++++++|...|.+.+||+
T Consensus 367 i~~~GHR~d--VRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~---~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 367 IEIGGHRSD--VRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT---CGYILASKFVPGDRYIVLGTKNGELQVFDL 441 (888)
T ss_pred eeeccchhh--eeEEEeecCceeeeecCCCcEEEEEccCcceeEEec---cccEEEEEecCCCceEEEeccCCceEEEEe
Confidence 455555666 8899999855 5555668899999999999998885 348999999999999999999999999999
Q ss_pred CCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcc------eEe-----eecCcCCCEEEEEEecCCC
Q 011971 238 SRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQED------FVS-----KLSGHKSEVCGLKWSYDNR 304 (474)
Q Consensus 238 ~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~------~~~-----~~~~h~~~V~~l~~spd~~ 304 (474)
.+...+.+++.|.+.|++++..+ ..+++|+.|.+|++||..--.. .+. ....-...|.|+.+||||+
T Consensus 442 aS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 442 ASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred ehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 99999999999999999999974 7899999999999999752111 111 1112357899999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEE
Q 011971 305 ELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNL 383 (474)
Q Consensus 305 ~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l 383 (474)
+||++--|++|+||-+.+.+....+.+|.-+|.|+..+||++ ++++|+ .|+.|++|-+.-|.|-..+- |...|.++
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSk-livTgS--ADKnVKiWGLdFGDCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSK-LIVTGS--ADKNVKIWGLDFGDCHKSFFAHDDSVMSV 598 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcC-eEEecc--CCCceEEeccccchhhhhhhcccCceeEE
Confidence 999999999999999999999999999999999999999987 788876 89999999999999877664 77889999
Q ss_pred EEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 011971 384 VWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 384 ~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~ 453 (474)
.|.|....+.+ .+.|+.|+-||-...+.+..+.+|...|++++.+|+|.++++++.|.+|++|.-...
T Consensus 599 ~F~P~~~~FFt--~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 599 QFLPKTHLFFT--CGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred EEcccceeEEE--ecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence 99998887777 669999999999999999999999999999999999999999999999999997763
No 42
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.1e-30 Score=256.69 Aligned_cols=288 Identities=22% Similarity=0.368 Sum_probs=250.5
Q ss_pred CCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEE
Q 011971 177 SHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWA-NRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGA 255 (474)
Q Consensus 177 ~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~s-p~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 255 (474)
.+.++++..+..+.++|.++.++.+.+ .|..+.|..++|- |+.++||++++.+.+++|+..+..+. .+.+|+..|.+
T Consensus 293 ~~~~l~vtaeQnl~l~d~~~l~i~k~i-vG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlS 370 (775)
T KOG0319|consen 293 MSQLLLVTAEQNLFLYDEDELTIVKQI-VGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLS 370 (775)
T ss_pred cCceEEEEccceEEEEEccccEEehhh-cCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheee
Confidence 378899999999999999999988877 4888999999986 56789999999999999998877665 88999999999
Q ss_pred EE-ec-CCEEEEEeCCCcEEEEECcCCc---ceEeeecCcCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCcc---e
Q 011971 256 LA-WS-SSLLSSGSRDKSILQRDIRAQE---DFVSKLSGHKSEVCGLKWSYDN-RELASGGNDNRLFVWNQHSTQP---V 326 (474)
Q Consensus 256 l~-~~-~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V~~l~~spd~-~~lasg~~Dg~v~iwd~~~~~~---~ 326 (474)
+. |. +.+|++|+.|.++++|.++... .++....+|...|.+++++..+ .+|++++.|+++++|++...+. .
T Consensus 371 L~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~ 450 (775)
T KOG0319|consen 371 LDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFP 450 (775)
T ss_pred eeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccccc
Confidence 99 65 5699999999999999884332 2456678999999999997644 5899999999999999976221 1
Q ss_pred E------EEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecC
Q 011971 327 L------KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYS 399 (474)
Q Consensus 327 ~------~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~ 399 (474)
. +...|...|++++++|+.+ |+++|+ .|++.++|++.....+..+. |...|.++.|++..+.+++ .+.
T Consensus 451 ~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~S--qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT--~Sg 525 (775)
T KOG0319|consen 451 IVLTCRYTERAHDKDINCVAIAPNDK-LIATGS--QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLAT--CSG 525 (775)
T ss_pred ceehhhHHHHhhcccccceEecCCCc-eEEecc--cccceeeecccCceEEEEeeCCccceEEEEeccccceeEe--ccC
Confidence 1 2236999999999999866 999987 99999999999888888887 6678999999999999999 678
Q ss_pred CCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCCC-CCCcccCCcCCc
Q 011971 400 QNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNT-DSEIGASSLGRT 471 (474)
Q Consensus 400 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~-~~~~~~~s~~r~ 471 (474)
|.+|+||.+.++.++.+|.||+..|..+.|-.+|..|++++.||.|++|++.++...... .|+..+|++...
T Consensus 526 D~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~ 598 (775)
T KOG0319|consen 526 DKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVS 598 (775)
T ss_pred CceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeec
Confidence 999999999999999999999999999999999999999999999999999999987765 678888877543
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=5.1e-32 Score=248.10 Aligned_cols=235 Identities=24% Similarity=0.419 Sum_probs=208.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEee
Q 011971 207 IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSK 286 (474)
Q Consensus 207 ~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 286 (474)
....|.|+.+. ...+++|..|.+|+|||..+..+++.+.||++.|.|+.|....+++|+.|.+|++||+.+++ ++.+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge-~l~t 272 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGE-PLNT 272 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCc-hhhH
Confidence 35689999885 56799999999999999999999999999999999999999999999999999999999988 6889
Q ss_pred ecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc---ceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEE
Q 011971 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ---PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (474)
Q Consensus 287 ~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~---~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iw 363 (474)
+.+|...|..+.|+ ..++++++.|.++.+||+.... ....+.+|.++|+.+.|+.. ++++++ .|++|++|
T Consensus 273 lihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k---yIVsAS--gDRTikvW 345 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSAS--GDRTIKVW 345 (499)
T ss_pred HhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc---eEEEec--CCceEEEE
Confidence 99999999999996 4599999999999999998654 33456799999999999854 666665 59999999
Q ss_pred ECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCC
Q 011971 364 NTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGD 442 (474)
Q Consensus 364 d~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~D 442 (474)
++.+++.+..+. |...|.|+++. ++.+++ |++|++|++||+..|.++..++||..-|.++.| |.+.|++|+.|
T Consensus 346 ~~st~efvRtl~gHkRGIAClQYr--~rlvVS--GSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYD 419 (499)
T KOG0281|consen 346 STSTCEFVRTLNGHKRGIACLQYR--DRLVVS--GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYD 419 (499)
T ss_pred eccceeeehhhhcccccceehhcc--CeEEEe--cCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeecccc
Confidence 999999999887 55668777763 666776 999999999999999999999999999999999 77899999999
Q ss_pred CcEEEEeCCCCCCCC
Q 011971 443 ETLRFWNVFPSPKSQ 457 (474)
Q Consensus 443 g~I~iW~l~~~~~~~ 457 (474)
|+|++||+..+....
T Consensus 420 GkikvWdl~aaldpr 434 (499)
T KOG0281|consen 420 GKIKVWDLQAALDPR 434 (499)
T ss_pred ceEEEEecccccCCc
Confidence 999999998776543
No 44
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=5.6e-29 Score=236.49 Aligned_cols=245 Identities=31% Similarity=0.496 Sum_probs=219.5
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcce
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDF 283 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~ 283 (474)
+|.+.|++++|+|++++|++++.+|.|.+|++.+++....+..|...+..+.|.+ +.|++++.+|.|.+||+.... .
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~-~ 85 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE-C 85 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc-c
Confidence 7889999999999999999999999999999999888888999999999999985 589999999999999998765 4
Q ss_pred EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEE
Q 011971 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (474)
Q Consensus 284 ~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iw 363 (474)
...+..|...|.++.|+++++++++++.|+.|.+||+++++....+..|...+.+++|+|++. ++++++ .|+.|++|
T Consensus 86 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~~~~i~i~ 162 (289)
T cd00200 86 VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT-FVASSS--QDGTIKLW 162 (289)
T ss_pred eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC-EEEEEc--CCCcEEEE
Confidence 667778999999999999988999988899999999999988888988999999999999955 666653 69999999
Q ss_pred ECCCCceeeeecC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCC
Q 011971 364 NTTTNTHLSCMDT-GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGD 442 (474)
Q Consensus 364 d~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~D 442 (474)
|+++++.+..+.. ...+.++.|+++++.+++ ++.++.|++||+..++.+..+..|...|.+++|+|++.++++++.|
T Consensus 163 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLS--SSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred EccccccceeEecCccccceEEECCCcCEEEE--ecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCC
Confidence 9998888777764 458999999999999988 5569999999999999999998899999999999998888888889
Q ss_pred CcEEEEeCCCCCCC
Q 011971 443 ETLRFWNVFPSPKS 456 (474)
Q Consensus 443 g~I~iW~l~~~~~~ 456 (474)
|.|++|++..+...
T Consensus 241 ~~i~i~~~~~~~~~ 254 (289)
T cd00200 241 GTIRVWDLRTGECV 254 (289)
T ss_pred CcEEEEEcCCceeE
Confidence 99999999865543
No 45
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.2e-29 Score=235.36 Aligned_cols=278 Identities=23% Similarity=0.393 Sum_probs=231.6
Q ss_pred CCcceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCC---CEEEEEeCCCcEEEecCCCCeE
Q 011971 166 DDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRN---THLAVGTSHGKVQIWDASRCKR 242 (474)
Q Consensus 166 ~d~~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g---~~la~gs~dg~I~iwd~~~~~~ 242 (474)
.|-+|..+.-.++-+|+++.||.+++||.. |+...++. +|.++|.+++|.-.. ..|++++.|.++++|..+.+..
T Consensus 104 hdDWVSsv~~~~~~IltgsYDg~~riWd~~-Gk~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~ 181 (423)
T KOG0313|consen 104 HDDWVSSVKGASKWILTGSYDGTSRIWDLK-GKSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN 181 (423)
T ss_pred chhhhhhhcccCceEEEeecCCeeEEEecC-CceEEEEe-cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh
Confidence 344688888888899999999999999986 45555543 999999999887533 3599999999999999887653
Q ss_pred E----EEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCC------------------------cceEeeecCcCC
Q 011971 243 V----RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQ------------------------EDFVSKLSGHKS 292 (474)
Q Consensus 243 ~----~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~------------------------~~~~~~~~~h~~ 292 (474)
. ....||...|-++..+ +..+++|+.|.+|.+|+.... ..++..+.+|.+
T Consensus 182 ~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~ 261 (423)
T KOG0313|consen 182 KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE 261 (423)
T ss_pred hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc
Confidence 2 3334999999999986 689999999999999993211 124667889999
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce--
Q 011971 293 EVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH-- 370 (474)
Q Consensus 293 ~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~-- 370 (474)
.|.++.|++ ...+.+++.|.+|+.||+.++..+.++.. ...+.++..+|... |+++|+ .|+.|++||.+++.-
T Consensus 262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~-Ll~~gs--sdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSK-LLASGS--SDRHIRLWDPRTGDGSV 336 (423)
T ss_pred ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccc-eeeecC--CCCceeecCCCCCCCce
Confidence 999999987 67899999999999999999998888744 67899999999754 888876 899999999987642
Q ss_pred --eeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-eeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEE
Q 011971 371 --LSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS-KLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRF 447 (474)
Q Consensus 371 --~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~i 447 (474)
...+.|.+.|..+.|+|...++++. |+.||++++||+++-+ ++..+.+|...|.++.|. ++..|++|+.|.+|++
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S-~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i 414 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVS-GSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRI 414 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEE-EecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEE
Confidence 2334477889999999988887766 8899999999999877 999999999999999998 5669999999999999
Q ss_pred EeCCC
Q 011971 448 WNVFP 452 (474)
Q Consensus 448 W~l~~ 452 (474)
+.-..
T Consensus 415 ~~~~~ 419 (423)
T KOG0313|consen 415 FKGSP 419 (423)
T ss_pred ecccc
Confidence 87543
No 46
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=7.1e-29 Score=238.55 Aligned_cols=282 Identities=21% Similarity=0.409 Sum_probs=237.2
Q ss_pred CcceeeeeCCC-CcEEEEEc-CCeEEEEeCCCCCEEEEEec-CCCCCEEEEEEcCCCCEEEEEeCC----CcEEEecCCC
Q 011971 167 DFYLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSH----GKVQIWDASR 239 (474)
Q Consensus 167 d~~v~~l~~s~-~~~la~~~-d~~V~lwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~gs~d----g~I~iwd~~~ 239 (474)
...++...++| +.++|.|. .|.|+|||....+.+...++ ...++|..|+|+.+++.|++.++. |.+.+|| +
T Consensus 59 ~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--S 136 (603)
T KOG0318|consen 59 AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--S 136 (603)
T ss_pred cceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--C
Confidence 34578889999 56666664 58999999877544333333 347899999999999888776542 3456665 6
Q ss_pred CeEEEEecCCCCcEEEEEec---CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEE
Q 011971 240 CKRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (474)
Q Consensus 240 ~~~~~~~~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~ 316 (474)
+..+-.+.+|..+|++++|- |-.+++|+.|++|.+|+-.-.+ +...+..|...|.++.|+|||..+|+.+.||+|.
T Consensus 137 G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFK-Fk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 137 GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFK-FKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY 215 (603)
T ss_pred CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCee-eeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence 77888999999999999997 4689999999999999865433 5667788999999999999999999999999999
Q ss_pred EEECCCCcceEEEc---cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCC----eEEEEEcCCC
Q 011971 317 VWNQHSTQPVLKYC---EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ----VCNLVWSKNV 389 (474)
Q Consensus 317 iwd~~~~~~~~~~~---~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~----v~~l~~s~~~ 389 (474)
+||-.+++.+..+. +|.+.|.+++|+||+..++.++ .|.++++||+.+.+++.++..+.. -..+.|- .
T Consensus 216 iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S---aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--k 290 (603)
T KOG0318|consen 216 IYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS---ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--K 290 (603)
T ss_pred EEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec---CCceEEEEEeeccceEEEeecCCchhceEEEEEEe--C
Confidence 99999999999998 7999999999999999777765 699999999999999999886554 4445565 5
Q ss_pred CeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 011971 390 NELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQN 458 (474)
Q Consensus 390 ~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~ 458 (474)
..|++ -+.+|.|.+++...+..+..+.||...|++++.++|+.+|++|+.||.|.-|+...+.....
T Consensus 291 d~lIt--VSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~ 357 (603)
T KOG0318|consen 291 DHLIT--VSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL 357 (603)
T ss_pred CeEEE--EEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc
Confidence 56666 44789999999999999999999999999999999999999999999999999998765533
No 47
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.8e-28 Score=250.56 Aligned_cols=279 Identities=17% Similarity=0.264 Sum_probs=217.0
Q ss_pred ceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEE----------E---EEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEE
Q 011971 169 YLNLVDWSSHNVLAVGLGNCVYLWNACSSKVT----------K---LCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQI 234 (474)
Q Consensus 169 ~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~----------~---~~~~~~~~~V~~v~~sp-~g~~la~gs~dg~I~i 234 (474)
.+....|...+++++..+..+..|+...+..+ . .+ .+|.+.|.+++|+| ++++|++|+.||+|+|
T Consensus 24 ~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l-~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI 102 (493)
T PTZ00421 24 TPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPIL-LGQEGPIIDVAFNPFDPQKLFTASEDGTIMG 102 (493)
T ss_pred ccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceE-eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 35556677677777777766677765544221 1 12 27899999999999 8899999999999999
Q ss_pred ecCCCC-------eEEEEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCC
Q 011971 235 WDASRC-------KRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR 304 (474)
Q Consensus 235 wd~~~~-------~~~~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~ 304 (474)
||+.++ +.+..+.+|...|.+++|++ ++|++|+.|+.|++||+.+.. ....+.+|...|.+++|+|++.
T Consensus 103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGS 181 (493)
T ss_pred EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-EEEEEcCCCCceEEEEEECCCC
Confidence 999764 35677899999999999985 589999999999999999876 5777889999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcceEEEccCCCc-EEEEEECCCCCcEEEEec-CCCCCeEEEEECCCCc-eeeeec--CCCC
Q 011971 305 ELASGGNDNRLFVWNQHSTQPVLKYCEHTAA-VKAIAWSPHLHGLLASGG-GTADRCIRFWNTTTNT-HLSCMD--TGSQ 379 (474)
Q Consensus 305 ~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~-V~~l~~sp~~~~ll~sg~-Gt~d~~I~iwd~~~~~-~~~~~~--~~~~ 379 (474)
+|++|+.|++|+|||+++++.+..+..|.+. +..+.|.+++..++++|. +..|+.|++||+++.. .+.... ....
T Consensus 182 lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~ 261 (493)
T PTZ00421 182 LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA 261 (493)
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc
Confidence 9999999999999999999999888888765 457889998877776652 2358999999998754 333332 3345
Q ss_pred eEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcC-CCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 380 VCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTG-HTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 380 v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
+....|+++++.|+++ |..|+.|++||+.+++.+..... +...+..++|.|.- -+-...-...|+|.+..
T Consensus 262 ~~~~~~d~d~~~L~lg-gkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~--~~dv~~~Ei~r~~~l~~ 332 (493)
T PTZ00421 262 LFIPFFDEDTNLLYIG-SKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW--SLDTRKCEIARFYALTY 332 (493)
T ss_pred eEEEEEcCCCCEEEEE-EeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc--cccccceeeeEEEEecC
Confidence 6667899999988884 44699999999999888776543 45567888898853 22223334556666654
No 48
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.2e-29 Score=240.48 Aligned_cols=276 Identities=24% Similarity=0.332 Sum_probs=237.9
Q ss_pred ceeeeeCCC--CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEe
Q 011971 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (474)
Q Consensus 169 ~v~~l~~s~--~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~ 246 (474)
.+..++|+| -.-+|+...-.|.||+..+....+.+. ...+.|.+++|..||++||+|...|.|+|||..+...++.+
T Consensus 28 ~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~s-rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~ 106 (487)
T KOG0310|consen 28 SVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFS-RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQL 106 (487)
T ss_pred cceeEecCCCCCCceEEecccEEEEEecchhhhhhhHH-hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHH
Confidence 488899998 345677777899999999888777553 56789999999999999999999999999997776778889
Q ss_pred cCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCC
Q 011971 247 EGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHS 322 (474)
Q Consensus 247 ~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-~~~lasg~~Dg~v~iwd~~~ 322 (474)
.+|+.+|..+.|++ ..|++|+.|+.+++||+.+.. ....+.+|+..|.+.+|+|. +..+++|+.||.|++||++.
T Consensus 107 ~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~ 185 (487)
T KOG0310|consen 107 YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS 185 (487)
T ss_pred hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence 99999999999984 689999999999999999887 36688999999999999995 45899999999999999998
Q ss_pred C-cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-eeeeec-CCCCeEEEEEcCCCCeEEEEEecC
Q 011971 323 T-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-HLSCMD-TGSQVCNLVWSKNVNELVSTHGYS 399 (474)
Q Consensus 323 ~-~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~-~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~ 399 (474)
. ..+.++ .|..+|..+.+-|.|. +++++| ...+++||+.+|. .+.... |...|+|+.+..++..|++ |+-
T Consensus 186 ~~~~v~el-nhg~pVe~vl~lpsgs-~iasAg---Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS--~sL 258 (487)
T KOG0310|consen 186 LTSRVVEL-NHGCPVESVLALPSGS-LIASAG---GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLS--GSL 258 (487)
T ss_pred CCceeEEe-cCCCceeeEEEcCCCC-EEEEcC---CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEee--ccc
Confidence 7 566666 8999999999999987 666654 4789999998654 444444 7888999999999999999 889
Q ss_pred CCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 400 QNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 400 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
|+.+++||+.+.+.+..+. ..++|.+++.+||++.++.|-.||.+.+=+...+.
T Consensus 259 D~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 259 DRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred ccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence 9999999999999988876 57889999999999999999999998877544443
No 49
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-29 Score=248.01 Aligned_cols=245 Identities=22% Similarity=0.328 Sum_probs=227.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcce
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF 283 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 283 (474)
.+.+.|.+|.++|...+++++-.+|.|+||+.++...++.+.-...+|.+..|- .+.+++|+.|..|++|+..+.+ .
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e-k 89 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE-K 89 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce-e
Confidence 468899999999999999999999999999999999999999999999999997 4899999999999999999988 5
Q ss_pred EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEE
Q 011971 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (474)
Q Consensus 284 ~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~i 362 (474)
+..+.+|...|.+++.+|...++++++.|-+|++||.+.. .+.++|.+|...|.+++|.|....-+++++ -|++|++
T Consensus 90 V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s--LDrTVKV 167 (794)
T KOG0276|consen 90 VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS--LDRTVKV 167 (794)
T ss_pred eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee--ccccEEE
Confidence 8999999999999999999999999999999999999865 677899999999999999999999999987 9999999
Q ss_pred EECCCCceeeeec-CCCCeEEEEEcCCC--CeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEE
Q 011971 363 WNTTTNTHLSCMD-TGSQVCNLVWSKNV--NELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTG 439 (474)
Q Consensus 363 wd~~~~~~~~~~~-~~~~v~~l~~s~~~--~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~ 439 (474)
|.+....+..+++ |...|.++.+-+-| .+|++ |..|..|+|||+.+..++.++.||...|..+.|+|.-..|+||
T Consensus 168 Wslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIs--gaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg 245 (794)
T KOG0276|consen 168 WSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLIS--GADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG 245 (794)
T ss_pred EEcCCCCCceeeeccccCcceEEeccCCCcceEEe--cCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe
Confidence 9999988888887 66789999998866 46777 9999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCCC
Q 011971 440 AGDETLRFWNVFPSPK 455 (474)
Q Consensus 440 s~Dg~I~iW~l~~~~~ 455 (474)
++||++|||+-.+-..
T Consensus 246 sEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 246 SEDGTVRIWNSKTYKL 261 (794)
T ss_pred cCCccEEEecCcceeh
Confidence 9999999999776543
No 50
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.8e-29 Score=234.86 Aligned_cols=301 Identities=17% Similarity=0.292 Sum_probs=243.2
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCCCCcceeeeeCCC-CcEEEEE-cCCeEEEEeCCCCCE---EEEEecCCCCCEEEE
Q 011971 140 VSHSPVKAPRKVPRSPYKILDAPALQDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKV---TKLCDLGIDDSVCSV 214 (474)
Q Consensus 140 ~~~~~~~~~r~i~~~p~~~l~ap~~~~d~~v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~~---~~~~~~~~~~~V~~v 214 (474)
++.-....++.+|..-.++|.. ..++ |-.+.||+ +.+||.+ .|.+..+|.+..... .+.+ .+|..+|..|
T Consensus 201 ll~Dh~c~~~qip~qt~qil~~--htdE--VWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl-vgh~~~V~yi 275 (519)
T KOG0293|consen 201 LLSDHFCGRLQIPSQTWQILQD--HTDE--VWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL-VGHSQPVSYI 275 (519)
T ss_pred hhhhcccCcccCCchhhhhHhh--CCCc--EEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee-ecccCceEEE
Confidence 3444556678888888888876 3445 66778887 6677766 478999998765443 3333 2899999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec-CCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCc-
Q 011971 215 GWANRNTHLAVGTSHGKVQIWDASRCKRVRTME-GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGH- 290 (474)
Q Consensus 215 ~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h- 290 (474)
.||||.++|++++.+..+.+||+.++.+.+.+. +|...+.+++|.| ..+++|+.|+.|..||++... .....+-
T Consensus 276 ~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr 353 (519)
T KOG0293|consen 276 MWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVR 353 (519)
T ss_pred EECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhcccccc
Confidence 999999999999999999999999999888875 4678999999985 689999999999999998654 3333332
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce
Q 011971 291 KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370 (474)
Q Consensus 291 ~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~ 370 (474)
...|.+++.++||+++++.+.|..|++++.++......+ ....+|+++..+.+++..++.- .+..|++||+.....
T Consensus 354 ~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL---~~qei~LWDl~e~~l 429 (519)
T KOG0293|consen 354 DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNL---QDQEIHLWDLEENKL 429 (519)
T ss_pred cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEc---ccCeeEEeecchhhH
Confidence 356999999999999999999999999998876555444 3456899999999999777765 699999999998777
Q ss_pred eeeecCCC---CeEEEEEcCCC-CeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECC-CCCEEEEEeCCCcE
Q 011971 371 LSCMDTGS---QVCNLVWSKNV-NELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISP-DGQTIVTGAGDETL 445 (474)
Q Consensus 371 ~~~~~~~~---~v~~l~~s~~~-~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~t~s~Dg~I 445 (474)
+..+.... -+..-+|--.. .++++ |++|++|+||+..+++++.++.||...|++++|+| |-.++|+|+.||+|
T Consensus 430 v~kY~Ghkq~~fiIrSCFgg~~~~fiaS--GSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtI 507 (519)
T KOG0293|consen 430 VRKYFGHKQGHFIIRSCFGGGNDKFIAS--GSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTI 507 (519)
T ss_pred HHHhhcccccceEEEeccCCCCcceEEe--cCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeE
Confidence 77665433 35555665544 55555 99999999999999999999999999999999999 56689999999999
Q ss_pred EEEeCCCC
Q 011971 446 RFWNVFPS 453 (474)
Q Consensus 446 ~iW~l~~~ 453 (474)
|||.....
T Consensus 508 RIWg~~~~ 515 (519)
T KOG0293|consen 508 RIWGPSDN 515 (519)
T ss_pred EEecCCcc
Confidence 99988654
No 51
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-29 Score=256.19 Aligned_cols=242 Identities=19% Similarity=0.324 Sum_probs=200.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCC----------------------------------------------
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR---------------------------------------------- 239 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~---------------------------------------------- 239 (474)
.|.+.|.++.|++||+|||+|+.||.|+||.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 6899999999999999999999999999997643
Q ss_pred --------------CeEEEEecCCCCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec-CC
Q 011971 240 --------------CKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DN 303 (474)
Q Consensus 240 --------------~~~~~~~~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-d~ 303 (474)
.+.++.+.||.+.|.+|.|+ .++|++++.|.+|++|++.... ++..+ .|...|+|++|+| |.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~-CL~~F-~HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKE-CLKVF-SHNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcc-eeeEE-ecCCeeEEEEecccCC
Confidence 02233456999999999999 6899999999999999998665 45544 6999999999999 88
Q ss_pred CEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--------
Q 011971 304 RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-------- 375 (474)
Q Consensus 304 ~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-------- 375 (474)
++|++|+-||.|+||++...+.+.-. .-..-|++++|.|+|++.++ |+.+|.+++|++...+......
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~-Dl~~lITAvcy~PdGk~avI---Gt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWN-DLRDLITAVCYSPDGKGAVI---GTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeeh-hhhhhheeEEeccCCceEEE---EEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 99999999999999999877766544 44588999999999986655 4599999999999877655442
Q ss_pred -CCCCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceeEEEcCCCc--cEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 011971 376 -TGSQVCNLVWSKNVN-ELVSTHGYSQNQIIVWRYPTMSKLATLTGHTF--RVLYLAISPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 376 -~~~~v~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~--~V~~l~~spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
.+..|+.++|.|... .+++ .+.|.+|+|||.+....+..|+|+.. .=....|+.||++|+++++|..|++|++.
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLV--TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLV--TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ccCceeeeeEecCCCCCeEEE--ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 123699999997554 4555 45899999999998888988887533 23456899999999999999999999986
Q ss_pred CCCC
Q 011971 452 PSPK 455 (474)
Q Consensus 452 ~~~~ 455 (474)
....
T Consensus 577 ~~~~ 580 (712)
T KOG0283|consen 577 SFNS 580 (712)
T ss_pred CCcc
Confidence 5543
No 52
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.4e-30 Score=235.14 Aligned_cols=280 Identities=18% Similarity=0.298 Sum_probs=245.6
Q ss_pred CCCCcceeeeeCCC-CcEEEEE-cCCeEEEEeCCCCCEEEEEec-------CCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011971 164 LQDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDL-------GIDDSVCSVGWANRNTHLAVGTSHGKVQI 234 (474)
Q Consensus 164 ~~~d~~v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~~~~~~~~-------~~~~~V~~v~~sp~g~~la~gs~dg~I~i 234 (474)
+...-++.|..|+| +++|+.| .||.|.+||..+|++.+-+.. -++++|.|++|+.|...||+|+.||.|+|
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 34455788999999 6666665 599999999999987654432 35789999999999999999999999999
Q ss_pred ecCCCCeEEEEec-CCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC
Q 011971 235 WDASRCKRVRTME-GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN 311 (474)
Q Consensus 235 wd~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~ 311 (474)
|.+++|.+++.+. .|+..|+|+.|+ +..+++++.|.++++.-+..++ ++..+.+|.+.|+...|.+||..+++++.
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-hHHHhcCccccccceEEcCCCCeEEEecC
Confidence 9999999999997 899999999998 5789999999999999999887 68899999999999999999999999999
Q ss_pred CCcEEEEECCCCcceEEEcc--CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC----CCCeEEEEE
Q 011971 312 DNRLFVWNQHSTQPVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT----GSQVCNLVW 385 (474)
Q Consensus 312 Dg~v~iwd~~~~~~~~~~~~--h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~----~~~v~~l~~ 385 (474)
||+|+||+..+.+++.+|+. ...+|..+..-|....-++.+. ..++|.+-++. |+.++.+.. ++...+.+.
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN--rsntv~imn~q-GQvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN--RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc--CCCeEEEEecc-ceEEeeeccCCccCCceEEEEe
Confidence 99999999999999988874 4568899988887765555554 68889999875 677777753 456777889
Q ss_pred cCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 011971 386 SKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449 (474)
Q Consensus 386 s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~ 449 (474)
+|.|.++++ -++|+.++.|.+.+++...++..|...|..++-+|..+.|++-++||.+++|.
T Consensus 446 SpkGewiYc--igED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SPKGEWIYC--IGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCCcEEEE--EccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 999999999 55999999999999999999999999999999999999999999999999995
No 53
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.7e-28 Score=266.99 Aligned_cols=260 Identities=18% Similarity=0.319 Sum_probs=215.1
Q ss_pred CCeEEEEeCCCCCEEEEEec----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC----e----EEEEecCCCCcE
Q 011971 186 GNCVYLWNACSSKVTKLCDL----GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC----K----RVRTMEGHRLRV 253 (474)
Q Consensus 186 d~~V~lwd~~~~~~~~~~~~----~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~----~----~~~~~~~h~~~V 253 (474)
+|.+++|+............ .|.+.|++++|+|+|++||+|+.||.|+|||+... . ....+. +...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 56678888776655444332 47889999999999999999999999999997532 1 122333 34678
Q ss_pred EEEEec---CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCcceEEE
Q 011971 254 GALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHSTQPVLKY 329 (474)
Q Consensus 254 ~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~lasg~~Dg~v~iwd~~~~~~~~~~ 329 (474)
.+++|+ +.+|++++.||+|++||+.+.. .+..+.+|...|++++|+| ++.+|++|+.|++|++||++++..+..+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~-~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCe-EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 999997 3789999999999999998765 5778889999999999997 7899999999999999999999888888
Q ss_pred ccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-eeeee-cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011971 330 CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-HLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (474)
Q Consensus 330 ~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~-~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 407 (474)
..+ ..|.++.|++....++++|+ .|+.|++||++++. .+..+ .+...|..+.|. ++..+++ ++.|+.|+|||
T Consensus 615 ~~~-~~v~~v~~~~~~g~~latgs--~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs--~s~D~~ikiWd 688 (793)
T PLN00181 615 KTK-ANICCVQFPSESGRSLAFGS--ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVS--SSTDNTLKLWD 688 (793)
T ss_pred ecC-CCeEEEEEeCCCCCEEEEEe--CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEE--EECCCEEEEEe
Confidence 654 68999999765455777776 89999999998765 33333 466789999997 6778888 77999999999
Q ss_pred CCC------CceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 011971 408 YPT------MSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 408 ~~~------~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~ 453 (474)
+.. ...+..+.+|...+..++|++++.+|++|+.|+.|++|+....
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 974 3578889999999999999999999999999999999997644
No 54
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.8e-29 Score=250.78 Aligned_cols=277 Identities=18% Similarity=0.302 Sum_probs=241.3
Q ss_pred ceeeeeCCC-CcEEEEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEe
Q 011971 169 YLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~ 246 (474)
.+..++|+| .-.+.++ ..|.|.+||..-+.++..++ +|+++|..|+|+|++.++++|+.|-.|+||+..+.+++.++
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd-eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL 89 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL 89 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh-ccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh
Confidence 477889999 4455555 58999999999888887775 89999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011971 247 EGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (474)
Q Consensus 247 ~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~ 324 (474)
.||-.-|..+.|+. ..++++|.|.+|+||+..++. ++..+.+|...|.|..|+|....+++++-|.+|+|||+..-+
T Consensus 90 ~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLR 168 (1202)
T KOG0292|consen 90 LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLR 168 (1202)
T ss_pred ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchh
Confidence 99999999999996 689999999999999999887 799999999999999999999999999999999999975210
Q ss_pred -----------------------------ceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce---ee
Q 011971 325 -----------------------------PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH---LS 372 (474)
Q Consensus 325 -----------------------------~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~---~~ 372 (474)
..+.+.+|...|+-++|+|.-. ++++|+ .|+.|++|.+..-+. -.
T Consensus 169 kk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~--DDRqVKlWrmnetKaWEvDt 245 (1202)
T KOG0292|consen 169 KKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGA--DDRQVKLWRMNETKAWEVDT 245 (1202)
T ss_pred ccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecC--CcceeeEEEeccccceeehh
Confidence 1245678999999999999876 888876 899999999865432 22
Q ss_pred eecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 373 CMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 373 ~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
+..|...|.++.|+|..+.+++ .++|+.|+|||+...+.+.++....++-+.++-+|..+++++| .|+-+.+|.+..
T Consensus 246 crgH~nnVssvlfhp~q~lIlS--nsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleR 322 (1202)
T KOG0292|consen 246 CRGHYNNVSSVLFHPHQDLILS--NSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLER 322 (1202)
T ss_pred hhcccCCcceEEecCccceeEe--cCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEcc
Confidence 3347788999999999999999 7799999999999999999998888899999999999877655 666777888874
Q ss_pred C
Q 011971 453 S 453 (474)
Q Consensus 453 ~ 453 (474)
.
T Consensus 323 E 323 (1202)
T KOG0292|consen 323 E 323 (1202)
T ss_pred c
Confidence 3
No 55
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=6.1e-28 Score=214.60 Aligned_cols=282 Identities=16% Similarity=0.259 Sum_probs=233.8
Q ss_pred CcceeeeeCCC--CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEE
Q 011971 167 DFYLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (474)
Q Consensus 167 d~~v~~l~~s~--~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~ 244 (474)
+..++.+.++. +-+++++.|..+.||-..+|+.+-.+. +|.+.|.|+....+.++|++|+.|.++++||+++|+++.
T Consensus 10 ERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~-GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la 88 (327)
T KOG0643|consen 10 ERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD-GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLA 88 (327)
T ss_pred ccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec-CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEE
Confidence 44577888886 445666779999999999999988886 999999999999999999999999999999999999999
Q ss_pred EecCCCCcEEEEEec--CCEEEEEeC-----CCcEEEEECcCCc------ceEeeecCcCCCEEEEEEecCCCEEEEEeC
Q 011971 245 TMEGHRLRVGALAWS--SSLLSSGSR-----DKSILQRDIRAQE------DFVSKLSGHKSEVCGLKWSYDNRELASGGN 311 (474)
Q Consensus 245 ~~~~h~~~V~~l~~~--~~~l~sgs~-----dg~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~spd~~~lasg~~ 311 (474)
.++ ...+|..+.|+ +++++.... .+.|.++|++... .+...+..+.+.++..-|.|-+..|++|..
T Consensus 89 ~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe 167 (327)
T KOG0643|consen 89 TWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHE 167 (327)
T ss_pred Eee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecC
Confidence 987 45678888887 455555433 3679999998432 356677788899999999999999999999
Q ss_pred CCcEEEEECCCCcc-eEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCC
Q 011971 312 DNRLFVWNQHSTQP-VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN 390 (474)
Q Consensus 312 Dg~v~iwd~~~~~~-~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~ 390 (474)
||.|.+||+++++. +.....|...|+.++++++.. ++++++ .|.+-++||..+-+++.++.+..+|.+.+++|...
T Consensus 168 ~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s--~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d 244 (327)
T KOG0643|consen 168 DGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITGS--KDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLD 244 (327)
T ss_pred CCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEecc--cCccceeeeccceeeEEEeeecccccceecccccc
Confidence 99999999999854 455567999999999999976 566655 89999999999999999999999999999999998
Q ss_pred eEEEEEecCCCeEE------------EEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 011971 391 ELVSTHGYSQNQII------------VWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 391 ~l~~~~g~~dg~I~------------iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~ 453 (474)
.++...|-+-..|. +|++-..+.+..+++|-++|++++|+|+|+..++|++||.||+.-++..
T Consensus 245 ~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 245 HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred eEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 88884222222222 2222233557778899999999999999999999999999999876543
No 56
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.4e-29 Score=237.02 Aligned_cols=286 Identities=19% Similarity=0.301 Sum_probs=241.1
Q ss_pred CCCCCCcccccCCCCCCCcceeeeeCCC--CcEEEEEcCCeEEEEeCCCCCEEEEEec-CCCCCEEEEEEcCCCCEEEEE
Q 011971 150 KVPRSPYKILDAPALQDDFYLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVG 226 (474)
Q Consensus 150 ~i~~~p~~~l~ap~~~~d~~v~~l~~s~--~~~la~~~d~~V~lwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~g 226 (474)
.+|.....+|+++.- -++.+.|-+ +.+.++|.|..|++|+...++....-.+ +..+.|+++.|.+++.+++++
T Consensus 162 ~lpS~~~~~ld~h~g----ev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAa 237 (459)
T KOG0288|consen 162 TLPSRALFVLDAHEG----EVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAA 237 (459)
T ss_pred ccchhhhhhhhcccc----ccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEee
Confidence 455666677777654 377888876 5677777899999999988774333333 567889999999999999999
Q ss_pred eCCCcEEEecCCCCeEEEEecCCCCcEEEEEec-C-CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCC
Q 011971 227 TSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS-S-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR 304 (474)
Q Consensus 227 s~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~-~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~ 304 (474)
+.|+.+++|++...+...++.+|+..|+++.|. . ..+++|+.|.+|++||+.... +..++. ..+.+..|..+ ..
T Consensus 238 s~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~-C~kt~l-~~S~cnDI~~~--~~ 313 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY-CSKTVL-PGSQCNDIVCS--IS 313 (459)
T ss_pred cCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhh-eecccc-ccccccceEec--ce
Confidence 999999999999999999999999999999997 3 449999999999999998855 333332 23445555554 55
Q ss_pred EEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-----CCCC
Q 011971 305 ELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-----TGSQ 379 (474)
Q Consensus 305 ~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-----~~~~ 379 (474)
.+++|..|++|++||.++..+......+. .|+++..++++..+++++ .|.++.+.|+++......+. ..+.
T Consensus 314 ~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsss---RDdtl~viDlRt~eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 314 DVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSS---RDDTLKVIDLRTKEIRQTFSAEGFKCASD 389 (459)
T ss_pred eeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeec---CCCceeeeecccccEEEEeeccccccccc
Confidence 78999999999999999999998886655 999999999999888885 79999999999998887765 4567
Q ss_pred eEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCc--cEEEEEECCCCCEEEEEeCCCcEEEEe
Q 011971 380 VCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTF--RVLYLAISPDGQTIVTGAGDETLRFWN 449 (474)
Q Consensus 380 v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~--~V~~l~~spdg~~l~t~s~Dg~I~iW~ 449 (474)
.+.+.|||++.|+++ |+.||.|+||++.++++...+..... .|++++|+|.|..|++++.++.+++|.
T Consensus 390 wtrvvfSpd~~YvaA--GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAA--GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred cceeEECCCCceeee--ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 899999999999999 99999999999999999888876444 599999999999999999999999994
No 57
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.4e-27 Score=210.30 Aligned_cols=237 Identities=27% Similarity=0.468 Sum_probs=202.5
Q ss_pred CCCCCEEEEEEcCC-CCEEEEEeCCCcEEEecCCC---CeEEEEe-cCCCCcEEEEEec--CCEEEEEeCCCcEEEEECc
Q 011971 206 GIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASR---CKRVRTM-EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIR 278 (474)
Q Consensus 206 ~~~~~V~~v~~sp~-g~~la~gs~dg~I~iwd~~~---~~~~~~~-~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~ 278 (474)
+|.+.+..++|+|. |..||+|+.|..|+||+... -.+...+ .+|...|.+++|+ +++|++|+.|.++.||.-.
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~ 91 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE 91 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC
Confidence 78899999999998 88999999999999999884 3344444 3799999999997 5899999999999999765
Q ss_pred CCc-ceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC---cceEEEccCCCcEEEEEECCCCCcEEEEecC
Q 011971 279 AQE-DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST---QPVLKYCEHTAAVKAIAWSPHLHGLLASGGG 354 (474)
Q Consensus 279 ~~~-~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~---~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~G 354 (474)
.++ +++..+.+|..+|.+++|+++|++||+++.|..|-||.+..+ ++...+..|...|+.+.|+|... ||++++
T Consensus 92 ~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~S- 169 (312)
T KOG0645|consen 92 DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCS- 169 (312)
T ss_pred CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEec-
Confidence 443 568899999999999999999999999999999999998754 56778889999999999999765 888876
Q ss_pred CCCCeEEEEECC---CCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEc-CCCccEEEEEE
Q 011971 355 TADRCIRFWNTT---TNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLT-GHTFRVLYLAI 429 (474)
Q Consensus 355 t~d~~I~iwd~~---~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~ 429 (474)
.|.+|++|.-. ...++..+. +...|.+++|++.|..|++ ++.|+.++||.+.+ .+. .|...+..++|
T Consensus 170 -YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s--~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~W 241 (312)
T KOG0645|consen 170 -YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVS--CSDDGTVSIWRLYT-----DLSGMHSRALYDVPW 241 (312)
T ss_pred -cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEE--ecCCcceEeeeecc-----CcchhcccceEeeee
Confidence 99999999866 235677776 4458999999999999999 78999999999652 222 47788999999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 430 SPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 430 spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
. ...|+++++|+.|+++.-...+
T Consensus 242 ~--~~~IaS~ggD~~i~lf~~s~~~ 264 (312)
T KOG0645|consen 242 D--NGVIASGGGDDAIRLFKESDSP 264 (312)
T ss_pred c--ccceEeccCCCEEEEEEecCCC
Confidence 7 4489999999999999887543
No 58
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-27 Score=215.60 Aligned_cols=266 Identities=19% Similarity=0.289 Sum_probs=222.8
Q ss_pred EEEEEcCCeEEEEeCCCCC----------EEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecC
Q 011971 180 VLAVGLGNCVYLWNACSSK----------VTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG 248 (474)
Q Consensus 180 ~la~~~d~~V~lwd~~~~~----------~~~~~~~-~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~ 248 (474)
+++++....|+-+++.-.. ...++.+ .|.+.|++++.+ |.++|+|+.|-+|+|||+.+.+.+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceec
Confidence 4566666666666553221 2223322 689999999996 89999999999999999999999999999
Q ss_pred CCCcEEEEEecC----CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011971 249 HRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (474)
Q Consensus 249 h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~ 324 (474)
|.+.|+++.|.+ +.|++|+.||.|.+|+...-. .+..+++|.+.|+.|+.+|.+++.++.+.|+.++.||+-.|+
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~-~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE-LLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE-EeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 999999999984 379999999999999998875 789999999999999999999999999999999999999888
Q ss_pred ceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEE
Q 011971 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQII 404 (474)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 404 (474)
....+.- ...-..+.|+|.|.++++.+ ...|-+|.+.+......+.....+.++.|- ++.+|++ |.+++.|.
T Consensus 161 ~a~v~~L-~~~at~v~w~~~Gd~F~v~~----~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~v--G~d~~~i~ 232 (362)
T KOG0294|consen 161 VAFVLNL-KNKATLVSWSPQGDHFVVSG----RNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLV--GGDNEWIS 232 (362)
T ss_pred cceeecc-CCcceeeEEcCCCCEEEEEe----ccEEEEEecccHhHhhhhhccccceeeeec-CCceEEE--ecCCceEE
Confidence 7666543 22234599999999777765 577999999998888888777777777775 4556777 88999999
Q ss_pred EEECCCCceeEEEcCCCccEEEEEE--CCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 011971 405 VWRYPTMSKLATLTGHTFRVLYLAI--SPDGQTIVTGAGDETLRFWNVFPSPKS 456 (474)
Q Consensus 405 iwd~~~~~~~~~l~~h~~~V~~l~~--spdg~~l~t~s~Dg~I~iW~l~~~~~~ 456 (474)
+||..+..+...+.+|..+|.++.+ .|++.+|+|++.||.|++||++...+.
T Consensus 233 ~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 233 LKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred EeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccC
Confidence 9999999999999999999999984 467889999999999999999977443
No 59
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2e-27 Score=236.89 Aligned_cols=274 Identities=23% Similarity=0.374 Sum_probs=238.8
Q ss_pred cceeeeeCCC-CcEEEEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE
Q 011971 168 FYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~ 245 (474)
+.++|+.-++ ..+||+| .||.|+||+..++...-.+. +|...|+++.|...|..|++|+.|+.|.+||+-...-...
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfn-gHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r 144 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFN-GHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR 144 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeec-ccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEE
Confidence 4578888777 4567777 48999999999886544443 8999999999999999999999999999999998888999
Q ss_pred ecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC-
Q 011971 246 MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS- 322 (474)
Q Consensus 246 ~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~- 322 (474)
+.||...|+.+-|. .+.+++.+.|+.|++||+.+.. +..+...|+.+|+++++.+ +.+++++.|+.+.+|++..
T Consensus 145 L~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqh-Cf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~ 221 (888)
T KOG0306|consen 145 LRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQH-CFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFE 221 (888)
T ss_pred eecchHHHhHHhccCCCeEEEEeccCceEEEEecccce-eeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecc
Confidence 99999999999986 4799999999999999999876 7888899999999999987 6899999999999999810
Q ss_pred ---------------------Cc---------------------------------------------------------
Q 011971 323 ---------------------TQ--------------------------------------------------------- 324 (474)
Q Consensus 323 ---------------------~~--------------------------------------------------------- 324 (474)
++
T Consensus 222 ~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~ 301 (888)
T KOG0306|consen 222 DDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENED 301 (888)
T ss_pred cccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccccc
Confidence 00
Q ss_pred ---------------------------------c------------------------------eEEEccCCCcEEEEEE
Q 011971 325 ---------------------------------P------------------------------VLKYCEHTAAVKAIAW 341 (474)
Q Consensus 325 ---------------------------------~------------------------------~~~~~~h~~~V~~l~~ 341 (474)
. ...+.+|...|.++++
T Consensus 302 ~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v 381 (888)
T KOG0306|consen 302 DVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV 381 (888)
T ss_pred chhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe
Confidence 0 0122357788889999
Q ss_pred CCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCC
Q 011971 342 SPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHT 421 (474)
Q Consensus 342 sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~ 421 (474)
+.+.. ++++| ..+.|++|+..+.+++.++..+ .+.+..|.|.++++++ |...|.+.+||+.+...+.++..|.
T Consensus 382 S~d~~-~~~Sg---a~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~--G~k~Gel~vfdlaS~~l~Eti~AHd 454 (888)
T KOG0306|consen 382 SSDSI-LLASG---AGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVL--GTKNGELQVFDLASASLVETIRAHD 454 (888)
T ss_pred ecCce-eeeec---CCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEE--eccCCceEEEEeehhhhhhhhhccc
Confidence 88754 66666 4789999999999999999877 8888999999999999 9999999999999999999999999
Q ss_pred ccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 422 FRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 422 ~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
+.|+.++.+||+..++||+.|.+|+||++.-
T Consensus 455 gaIWsi~~~pD~~g~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 455 GAIWSISLSPDNKGFVTGSADKTVKFWDFKL 485 (888)
T ss_pred cceeeeeecCCCCceEEecCCcEEEEEeEEE
Confidence 9999999999999999999999999999763
No 60
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.6e-28 Score=216.82 Aligned_cols=234 Identities=28% Similarity=0.482 Sum_probs=197.6
Q ss_pred eeeeeCCC---CcEEEEEcCCeEEEEeCCCCC-EEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEecCCCCeEEE
Q 011971 170 LNLVDWSS---HNVLAVGLGNCVYLWNACSSK-VTKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCKRVR 244 (474)
Q Consensus 170 v~~l~~s~---~~~la~~~d~~V~lwd~~~~~-~~~~~~~~~~~~V~~v~~sp-~g~~la~gs~dg~I~iwd~~~~~~~~ 244 (474)
+..++|++ +.+++++.||+++|||..-.. .+..++ .|...|.++.|++ ++..+++++.||+|++|+....+.+.
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~ 141 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ 141 (311)
T ss_pred eeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHH-hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE
Confidence 77899997 467788889999999954322 233332 7999999999998 45678888999999999999999999
Q ss_pred EecCCCCcEEEEEec---CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec-CCCEEEEEeCCCcEEEEEC
Q 011971 245 TMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQ 320 (474)
Q Consensus 245 ~~~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~lasg~~Dg~v~iwd~ 320 (474)
++.+|...|...+|+ ++++++++.|+++++||++.....+. +..|..+|.++.|+. +.+.|++|+.|+.|++||+
T Consensus 142 Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDi 220 (311)
T KOG0277|consen 142 TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDI 220 (311)
T ss_pred eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEeh
Confidence 999999999999998 48999999999999999998875444 889999999999997 6788999999999999999
Q ss_pred CCC-cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ceeeeecCC-CCeEEEEEcCCCCeEEEEEe
Q 011971 321 HST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLSCMDTG-SQVCNLVWSKNVNELVSTHG 397 (474)
Q Consensus 321 ~~~-~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~-~~~~~~~~~-~~v~~l~~s~~~~~l~~~~g 397 (474)
++. .++.++.+|.-+|..++|+|+...+|++++ .|-+++|||...+ ..+...+++ .-++.+.|++.....++. .
T Consensus 221 r~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSas--YDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs-~ 297 (311)
T KOG0277|consen 221 RNLRTPLFELNGHGLAVRKVKFSPHHASLLASAS--YDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAS-T 297 (311)
T ss_pred hhccccceeecCCceEEEEEecCcchhhHhhhcc--ccceEEecccccchhhhhhhhccceEEeccccccccCceeee-c
Confidence 875 578889999999999999999999999987 9999999998854 345555544 458999999865444443 4
Q ss_pred cCCCeEEEEEC
Q 011971 398 YSQNQIIVWRY 408 (474)
Q Consensus 398 ~~dg~I~iwd~ 408 (474)
+-|+.++||+-
T Consensus 298 gWDe~l~Vw~p 308 (311)
T KOG0277|consen 298 GWDELLYVWNP 308 (311)
T ss_pred ccccceeeecc
Confidence 48999999983
No 61
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=7.4e-28 Score=213.43 Aligned_cols=255 Identities=19% Similarity=0.340 Sum_probs=222.6
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE--ecCCCCcEEEEEec---CCEEEEEeCCCcEEEEECcCC
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT--MEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQ 280 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~--~~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~ 280 (474)
+|...|.+|+|+.+|..|++|+.|+++.+|+++..+.... ..+|...|-.++|+ ++.|++++.|.+|++||++..
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~ 97 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG 97 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC
Confidence 6788999999999999999999999999999998765544 45899999999997 589999999999999999998
Q ss_pred cceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeE
Q 011971 281 EDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCI 360 (474)
Q Consensus 281 ~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I 360 (474)
+ ++.......+.| -+.|+|+|.++++++.|..|.+.|.++.+.+... .....+.-++|+-++..++++.| .|+|
T Consensus 98 k-~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~-~~~~e~ne~~w~~~nd~Fflt~G---lG~v 171 (313)
T KOG1407|consen 98 K-CTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE-QFKFEVNEISWNNSNDLFFLTNG---LGCV 171 (313)
T ss_pred c-EEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehh-cccceeeeeeecCCCCEEEEecC---CceE
Confidence 8 444444433434 5789999999999999999999999988877665 44567888999977776777654 7999
Q ss_pred EEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEE
Q 011971 361 RFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTG 439 (474)
Q Consensus 361 ~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~ 439 (474)
.|.....-+++..++ |.+...++.|+|+|+++++ |+.|-.+.+||+...-++..+..+.-+|..|.||.||++||+|
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~--GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFAT--GSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECCCCceEee--ccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 999998888888887 6778999999999999999 9999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCCCCCCCCCCcccCCc
Q 011971 440 AGDETLRFWNVFPSPKSQNTDSEIGASSL 468 (474)
Q Consensus 440 s~Dg~I~iW~l~~~~~~~~~~~~~~~~s~ 468 (474)
++|-.|-|=++.++.+..+...++...++
T Consensus 250 SEDh~IDIA~vetGd~~~eI~~~~~t~tV 278 (313)
T KOG1407|consen 250 SEDHFIDIAEVETGDRVWEIPCEGPTFTV 278 (313)
T ss_pred CccceEEeEecccCCeEEEeeccCCceeE
Confidence 99999999999999988877777766554
No 62
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.7e-28 Score=244.77 Aligned_cols=247 Identities=19% Similarity=0.336 Sum_probs=220.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceE
Q 011971 207 IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFV 284 (474)
Q Consensus 207 ~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~ 284 (474)
.+..|..++|+|...+++++-.+|.|++||..-+.++..+..|.++|..++|++ .+|++|+.|-.|++|+..+.. ++
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr-cl 86 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR-CL 86 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce-eh
Confidence 357899999999999999999999999999999999999999999999999995 799999999999999999877 78
Q ss_pred eeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011971 285 SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (474)
Q Consensus 285 ~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd 364 (474)
.++.+|-..|..+.|++.-.++++++.|.+|+||+..+.+++..+++|...|.|..|+|... ++++++ -|.+|++||
T Consensus 87 ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED-lIVSaS--LDQTVRVWD 163 (1202)
T KOG0292|consen 87 FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-LIVSAS--LDQTVRVWD 163 (1202)
T ss_pred hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc-eEEEec--ccceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999765 777776 999999999
Q ss_pred CCCCce----------------------------e-eee-cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc--
Q 011971 365 TTTNTH----------------------------L-SCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS-- 412 (474)
Q Consensus 365 ~~~~~~----------------------------~-~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~-- 412 (474)
+..-+. + ..+ .|...|.-++|+|.-..+++ |..|.+|++|.+..-+
T Consensus 164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVS--G~DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVS--GADDRQVKLWRMNETKAW 241 (1202)
T ss_pred ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEe--cCCcceeeEEEeccccce
Confidence 863110 0 111 14556888999999999999 9999999999987543
Q ss_pred eeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 011971 413 KLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNT 459 (474)
Q Consensus 413 ~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~ 459 (474)
.+.+..+|...|.++-|+|...+|++.++|++|++||+...+..+..
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence 35677899999999999999999999999999999999987765544
No 63
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=6.2e-29 Score=237.05 Aligned_cols=246 Identities=21% Similarity=0.370 Sum_probs=213.7
Q ss_pred CCCCCEEEEEEcC-CCCEEEEEeCCCcEEEecCCC-CeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCc
Q 011971 206 GIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASR-CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE 281 (474)
Q Consensus 206 ~~~~~V~~v~~sp-~g~~la~gs~dg~I~iwd~~~-~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~ 281 (474)
+|+..|+++.|.| .+.+|++|+.|+.|+||++-. +++++++.+|..+|.+++|+ +..|++++.|+.|++||++++.
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~ 291 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ 291 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccce
Confidence 8999999999999 889999999999999999976 88999999999999999998 6899999999999999999988
Q ss_pred ceEeeecCcCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeE
Q 011971 282 DFVSKLSGHKSEVCGLKWSYDN-RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCI 360 (474)
Q Consensus 282 ~~~~~~~~h~~~V~~l~~spd~-~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I 360 (474)
+...+. ....++++.|+|++ +.+++|+.|+.|+.||+++++.++++..|-++|..+.|-+++..++.+. .|+.+
T Consensus 292 -~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS---Ddks~ 366 (503)
T KOG0282|consen 292 -VLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS---DDKSV 366 (503)
T ss_pred -EEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec---cCccE
Confidence 344443 23568999999988 8899999999999999999999999999999999999999999877765 79999
Q ss_pred EEEECCCCceeeeecCC--CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC---ceeEEEcCCC--ccEEEEEECCCC
Q 011971 361 RFWNTTTNTHLSCMDTG--SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM---SKLATLTGHT--FRVLYLAISPDG 433 (474)
Q Consensus 361 ~iwd~~~~~~~~~~~~~--~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~---~~~~~l~~h~--~~V~~l~~spdg 433 (474)
+||+.+.+..+..+... ....++..+|+++++++ -+.|+.|.+|.+... .+...+.||. +.-..+.|||||
T Consensus 367 riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~a--Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG 444 (503)
T KOG0282|consen 367 RIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAA--QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG 444 (503)
T ss_pred EEEEcCCCccchhhcchhhccCcceecCCCCCeehh--hccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC
Confidence 99999988777665533 34678899999999999 789999999987543 3344566774 446778999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCC
Q 011971 434 QTIVTGAGDETLRFWNVFPSPKSQN 458 (474)
Q Consensus 434 ~~l~t~s~Dg~I~iW~l~~~~~~~~ 458 (474)
.+|++|+.||.+.+||..+-.....
T Consensus 445 ~~l~SGdsdG~v~~wdwkt~kl~~~ 469 (503)
T KOG0282|consen 445 RTLCSGDSDGKVNFWDWKTTKLVSK 469 (503)
T ss_pred CeEEeecCCccEEEeechhhhhhhc
Confidence 9999999999999999987665443
No 64
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.7e-26 Score=207.02 Aligned_cols=275 Identities=18% Similarity=0.225 Sum_probs=226.9
Q ss_pred cceeeeeCCC-Cc-EEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeC--CCcEEEecCCCCeEE
Q 011971 168 FYLNLVDWSS-HN-VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS--HGKVQIWDASRCKRV 243 (474)
Q Consensus 168 ~~v~~l~~s~-~~-~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~--dg~I~iwd~~~~~~~ 243 (474)
-.+++++|+. +. +++++.|..++|||..+++..+.+. .+.-.|..++|......++.++. |.+|+..++.+.+.+
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl 93 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL 93 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence 3589999998 44 4454567899999999999998885 45567888999888777777776 789999999999999
Q ss_pred EEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011971 244 RTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (474)
Q Consensus 244 ~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~ 321 (474)
+.+.||...|.+|+.+| +.+++++.|++|++||++... +...+..-.. ..++|.|+|-++|++...+.|++||++
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~-cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~R 170 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK-CQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDLR 170 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC-CceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEec
Confidence 99999999999999995 899999999999999999766 3333332222 345799999999999988899999998
Q ss_pred CC--cceEEEc---cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCC----eEEEEEcCCCCeE
Q 011971 322 ST--QPVLKYC---EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ----VCNLVWSKNVNEL 392 (474)
Q Consensus 322 ~~--~~~~~~~---~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~----v~~l~~s~~~~~l 392 (474)
.. .+..++. +.....+.|.|+|+|+.+|++. ..+.+++.|.-+|..+..+..... .....|+|+++++
T Consensus 171 s~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT---~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fv 247 (311)
T KOG1446|consen 171 SFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST---NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFV 247 (311)
T ss_pred ccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe---CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEE
Confidence 64 4455554 3467889999999999999976 688999999999998887764322 3578899999999
Q ss_pred EEEEecCCCeEEEEECCCCceeEEEcC-CCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 011971 393 VSTHGYSQNQIIVWRYPTMSKLATLTG-HTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 393 ~~~~g~~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~ 453 (474)
++ |..||.|.+|+++++.++..+.+ +.+.+.++.|+|.-..++ +.+..|.+|=....
T Consensus 248 l~--gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~--sa~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 248 LS--GSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFV--SASSNLVFWLPDED 305 (311)
T ss_pred EE--ecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeee--ecCceEEEEecccc
Confidence 99 88999999999999999999998 789999999998755555 45678999976543
No 65
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.6e-27 Score=219.86 Aligned_cols=240 Identities=27% Similarity=0.416 Sum_probs=209.5
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec-----CCEEEEEeCCCcEEEEECcCC
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS-----SSLLSSGSRDKSILQRDIRAQ 280 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~-----~~~l~sgs~dg~I~iwd~~~~ 280 (474)
-|.+.|.+|... ++++++|+.||.++|||. .|+...++.+|.++|.+++|. ...|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 578889888887 789999999999999995 488999999999999999995 246999999999999998876
Q ss_pred cce---EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC-------------------------CcceEEEccC
Q 011971 281 EDF---VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS-------------------------TQPVLKYCEH 332 (474)
Q Consensus 281 ~~~---~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~-------------------------~~~~~~~~~h 332 (474)
... +....+|...|-++...++|..+++|+.|.+|.||+..+ ..++..+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 632 333459999999999999999999999999999999321 2366778899
Q ss_pred CCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc
Q 011971 333 TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (474)
Q Consensus 333 ~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~ 412 (474)
..+|.++.|++. ..+.+++ .|.+|+.||+.++..+..+.++..+.++..++..+.|++ |+.|..|++||.+++.
T Consensus 260 t~~Vs~V~w~d~--~v~yS~S--wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~--gssdr~irl~DPR~~~ 333 (423)
T KOG0313|consen 260 TEPVSSVVWSDA--TVIYSVS--WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLAS--GSSDRHIRLWDPRTGD 333 (423)
T ss_pred ccceeeEEEcCC--CceEeec--ccceEEEEEeecccceeeeecCcceeEeecccccceeee--cCCCCceeecCCCCCC
Confidence 999999999994 3566665 899999999999999999999999999999999999998 9999999999988653
Q ss_pred ---eeEEEcCCCccEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCC
Q 011971 413 ---KLATLTGHTFRVLYLAISPD-GQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 413 ---~~~~l~~h~~~V~~l~~spd-g~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
...+|.+|...|.++.|+|. ...|++|+.|+++++||+....
T Consensus 334 gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 334 GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 45678899999999999995 4578899999999999998754
No 66
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=9.1e-28 Score=216.79 Aligned_cols=212 Identities=24% Similarity=0.393 Sum_probs=197.2
Q ss_pred EEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011971 243 VRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (474)
Q Consensus 243 ~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~ 320 (474)
+..+.+|.+.|..+.|+| ..|++|+.|..|.+|++....+-...+++|.+.|..+.|..|++.|++++.|.+|+.||.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 344679999999999985 799999999999999987766567788899999999999999999999999999999999
Q ss_pred CCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCC
Q 011971 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400 (474)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d 400 (474)
++|+.+.+++.|...|+++.-+.-|..++.+|+ .|+++++||+++...++++....+++++.|..++..+++ |.-|
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sgs--dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~s--ggId 195 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGS--DDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVIS--GGID 195 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecC--CCceEEEEeecccchhhccccceeEEEEEecccccceee--cccc
Confidence 999999999999999999997777777888775 999999999999999999999999999999999999999 8899
Q ss_pred CeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 011971 401 NQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQN 458 (474)
Q Consensus 401 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~ 458 (474)
+.|++||++....+..+.||...|+.|..+++|.++.+-+.|.++++||+.+-...+.
T Consensus 196 n~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQR 253 (338)
T ss_pred CceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCc
Confidence 9999999999999999999999999999999999999999999999999998776665
No 67
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=4e-27 Score=221.79 Aligned_cols=275 Identities=17% Similarity=0.254 Sum_probs=238.0
Q ss_pred eeeeeCCC--CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec
Q 011971 170 LNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (474)
Q Consensus 170 v~~l~~s~--~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~ 247 (474)
+..++..+ .+++++|.|..+.++|..++++..++. ||...|+.+.++++...+++++.|-.|+||.+..........
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~ 300 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLK-GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSR 300 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEecchhhhhhhcc-CcceEEEEEEeccchhheeecCCcceEEeeccccccCccccc
Confidence 56677766 667777788899999999999988886 999999999999999999999999999999998888888888
Q ss_pred CCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeec-CcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011971 248 GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLS-GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (474)
Q Consensus 248 ~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~ 324 (474)
.|..+|+.+..+ +++|++++.||+..+.|++++........ ...-.+++.+|+|||..|.+|..|+.|+|||+.++.
T Consensus 301 ~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~ 380 (506)
T KOG0289|consen 301 PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT 380 (506)
T ss_pred cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc
Confidence 999999999987 68999999999999999999885443322 233468999999999999999999999999999999
Q ss_pred ceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC--CeEEEEEcCCCCeEEEEEecCCCe
Q 011971 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGS--QVCNLVWSKNVNELVSTHGYSQNQ 402 (474)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~--~v~~l~~s~~~~~l~~~~g~~dg~ 402 (474)
.+..|.+|.++|++++|+.+|.+|++ +. .|+.|++||++..+...++.... .+..+.|...|.+|+. ++.+=+
T Consensus 381 ~~a~Fpght~~vk~i~FsENGY~Lat-~a--dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~--~g~~l~ 455 (506)
T KOG0289|consen 381 NVAKFPGHTGPVKAISFSENGYWLAT-AA--DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGI--AGSDLQ 455 (506)
T ss_pred ccccCCCCCCceeEEEeccCceEEEE-Ee--cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEe--ecceeE
Confidence 99999999999999999999875544 43 79999999999988877776443 5999999999999999 555555
Q ss_pred EEEEEC--CCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 011971 403 IIVWRY--PTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 403 I~iwd~--~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l 450 (474)
|++++- .++.++..+..|.+..+.+.|....+++++++.|..++++.+
T Consensus 456 Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 456 VYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 555552 377888888899999999999999999999999999998865
No 68
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=236.48 Aligned_cols=270 Identities=19% Similarity=0.306 Sum_probs=228.5
Q ss_pred CcEEEEEcCCeEEEEeCCCCCEEEEE------------------------------------ecCCCCCEEEEEEcCCCC
Q 011971 178 HNVLAVGLGNCVYLWNACSSKVTKLC------------------------------------DLGIDDSVCSVGWANRNT 221 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~~~~~~~~------------------------------------~~~~~~~V~~v~~sp~g~ 221 (474)
+-+++++.|++|++|++..+..-.++ ..+....+.+++.+|+|+
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq 472 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ 472 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc
Confidence 56889999999999998763111110 012345689999999999
Q ss_pred EEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec-----CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEE
Q 011971 222 HLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS-----SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCG 296 (474)
Q Consensus 222 ~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~-----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 296 (474)
+||+|..-|+++||++...+....+..|...|.|+.|+ ..+|+++++|+.|.++|+...-.++.++.+|...|++
T Consensus 473 hLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITs 552 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITS 552 (1080)
T ss_pred eecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeE
Confidence 99999999999999999999999999999999999998 2689999999999999998887788999999999999
Q ss_pred EEEecCC--CEEEEEeCCCcEEEEECCCCcceEEEcc-----CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc
Q 011971 297 LKWSYDN--RELASGGNDNRLFVWNQHSTQPVLKYCE-----HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (474)
Q Consensus 297 l~~spd~--~~lasg~~Dg~v~iwd~~~~~~~~~~~~-----h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~ 369 (474)
++|-..| ..+++++.|..|.+--.+.......|.. ....++.++..|..+ ++++++ .|+.|+|||+.+++
T Consensus 553 vKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~c--QDrnirif~i~sgK 629 (1080)
T KOG1408|consen 553 VKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVC--QDRNIRIFDIESGK 629 (1080)
T ss_pred EEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEe--cccceEEEeccccc
Confidence 9999877 7889999998776543332211222222 245689999999987 455554 89999999999999
Q ss_pred eeeeec----CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcE
Q 011971 370 HLSCMD----TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETL 445 (474)
Q Consensus 370 ~~~~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I 445 (474)
..+.++ +.+....+...|.|.|+++ .+.|.++.++|+.++++++...||...|+.+.|.+|-++|++.++||.|
T Consensus 630 q~k~FKgs~~~eG~lIKv~lDPSgiY~at--Scsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCI 707 (1080)
T KOG1408|consen 630 QVKSFKGSRDHEGDLIKVILDPSGIYLAT--SCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCI 707 (1080)
T ss_pred eeeeecccccCCCceEEEEECCCccEEEE--eecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceE
Confidence 999887 3466888999999999999 7799999999999999999999999999999999999999999999999
Q ss_pred EEEeCCC
Q 011971 446 RFWNVFP 452 (474)
Q Consensus 446 ~iW~l~~ 452 (474)
.+|.+..
T Consensus 708 FvW~lp~ 714 (1080)
T KOG1408|consen 708 FVWKLPL 714 (1080)
T ss_pred EEEECch
Confidence 9999875
No 69
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=3e-26 Score=234.24 Aligned_cols=243 Identities=17% Similarity=0.269 Sum_probs=189.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEE-------------EEecCCCCcEEEEEecC---CEEEEEeCCCcEE
Q 011971 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV-------------RTMEGHRLRVGALAWSS---SLLSSGSRDKSIL 273 (474)
Q Consensus 210 ~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~-------------~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~ 273 (474)
.|.....++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|++ ++|++|+.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 3444445555555555555555556654333221 24678999999999985 6899999999999
Q ss_pred EEECcCCc------ceEeeecCcCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCC
Q 011971 274 QRDIRAQE------DFVSKLSGHKSEVCGLKWSYDN-RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346 (474)
Q Consensus 274 iwd~~~~~------~~~~~~~~h~~~V~~l~~spd~-~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~ 346 (474)
+||+.... ..+..+.+|...|.+++|+|++ ++|++|+.|++|+|||+.+++.+..+..|...|.+++|+|++.
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS 181 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC
Confidence 99997642 2466788999999999999975 6999999999999999999999999999999999999999987
Q ss_pred cEEEEecCCCCCeEEEEECCCCceeeeecCCC--CeEEEEEcCCCCeEEEEEe--cCCCeEEEEECCCCce-eEEEcCC-
Q 011971 347 GLLASGGGTADRCIRFWNTTTNTHLSCMDTGS--QVCNLVWSKNVNELVSTHG--YSQNQIIVWRYPTMSK-LATLTGH- 420 (474)
Q Consensus 347 ~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~--~v~~l~~s~~~~~l~~~~g--~~dg~I~iwd~~~~~~-~~~l~~h- 420 (474)
++++++ .|+.|++||+++++.+..+..+. .+..+.|.+++..++++.. ..|+.|++||+++... +.....+
T Consensus 182 -lLatgs--~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~ 258 (493)
T PTZ00421 182 -LLCTTS--KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ 258 (493)
T ss_pred -EEEEec--CCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC
Confidence 666665 89999999999999887776432 3557889999888877521 3589999999987653 3333333
Q ss_pred CccEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCCC
Q 011971 421 TFRVLYLAISPDGQTIVTGA-GDETLRFWNVFPSPK 455 (474)
Q Consensus 421 ~~~V~~l~~spdg~~l~t~s-~Dg~I~iW~l~~~~~ 455 (474)
...+....|++++.+|++++ +|+.|++|++..+..
T Consensus 259 ~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 259 SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence 34566678999999999887 599999999987654
No 70
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=9.5e-28 Score=218.31 Aligned_cols=250 Identities=17% Similarity=0.284 Sum_probs=214.4
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec--------CCCCcEEEEEec--CCEEEEEeCCC
Q 011971 201 KLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME--------GHRLRVGALAWS--SSLLSSGSRDK 270 (474)
Q Consensus 201 ~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~--------~h~~~V~~l~~~--~~~l~sgs~dg 270 (474)
+.+.++....+-|..|+|||+||++|+.||.|.|||..+|+.-..++ -+..+|.|+.|+ ...|++|+.||
T Consensus 206 r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 206 RSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred hheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence 34556778889999999999999999999999999999987655443 578899999998 47899999999
Q ss_pred cEEEEECcCCcceEeee-cCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEE
Q 011971 271 SILQRDIRAQEDFVSKL-SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLL 349 (474)
Q Consensus 271 ~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 349 (474)
.|++|.++++. ++..+ .+|...|+++.|+.|+.++++++.|.+++|.-+.+|+.+..|.+|...|+...|.++|+.++
T Consensus 286 kIKvWri~tG~-ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ii 364 (508)
T KOG0275|consen 286 KIKVWRIETGQ-CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHII 364 (508)
T ss_pred cEEEEEEecch-HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEE
Confidence 99999999998 45555 48999999999999999999999999999999999999999999999999999999999877
Q ss_pred EEecCCCCCeEEEEECCCCceeeeecC---CCCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceeEEEcC---CCc
Q 011971 350 ASGGGTADRCIRFWNTTTNTHLSCMDT---GSQVCNLVWSKNVN-ELVSTHGYSQNQIIVWRYPTMSKLATLTG---HTF 422 (474)
Q Consensus 350 ~sg~Gt~d~~I~iwd~~~~~~~~~~~~---~~~v~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~~~~~~~l~~---h~~ 422 (474)
.+. .||+|++|+.++.+|+.+++. ...|.++..-|... .+++ ....+.|+|.++ .++.+..+.. ..+
T Consensus 365 saS---sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV--CNrsntv~imn~-qGQvVrsfsSGkREgG 438 (508)
T KOG0275|consen 365 SAS---SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV--CNRSNTVYIMNM-QGQVVRSFSSGKREGG 438 (508)
T ss_pred Eec---CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE--EcCCCeEEEEec-cceEEeeeccCCccCC
Confidence 765 699999999999999988874 45688888777554 4555 557889999887 5677777753 234
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 011971 423 RVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 423 ~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~ 457 (474)
...+.+.||.|.++++.++|+.++.|.+..+....
T Consensus 439 dFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 439 DFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLER 473 (508)
T ss_pred ceEEEEecCCCcEEEEEccCcEEEEEEeecCceee
Confidence 56678899999999999999999999999887543
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.9e-27 Score=227.35 Aligned_cols=244 Identities=20% Similarity=0.315 Sum_probs=211.6
Q ss_pred CCCCEEEEEEcCCCC-EEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcce
Q 011971 207 IDDSVCSVGWANRNT-HLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF 283 (474)
Q Consensus 207 ~~~~V~~v~~sp~g~-~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 283 (474)
..+.|++++|+|... -+|+.+ .-.++||+..+....+++......|.++.|. +.+|++|...|.|+++|+.+. ..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-~i 102 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-VI 102 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH-HH
Confidence 357899999999654 355544 4579999999888888888888899999996 789999999999999996553 36
Q ss_pred EeeecCcCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEE
Q 011971 284 VSKLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (474)
Q Consensus 284 ~~~~~~h~~~V~~l~~spd-~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~i 362 (474)
+..+.+|+.+|..+.|+|+ +..|++|+.|+.+++||+.+......+.+|...|.|.+|+|-...++++|+ .||.|++
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGs--YDg~vrl 180 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGS--YDGKVRL 180 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecC--CCceEEE
Confidence 7888999999999999995 567888999999999999999877788999999999999999999999987 9999999
Q ss_pred EECCCC-ceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC-ceeEEEcCCCccEEEEEECCCCCEEEEEe
Q 011971 363 WNTTTN-THLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM-SKLATLTGHTFRVLYLAISPDGQTIVTGA 440 (474)
Q Consensus 363 wd~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~t~s 440 (474)
||++.. ..+.+++++.+|..+.+-|.|..++++. .+.|+|||+-++ +.+..+..|...|+||++..++..|++|+
T Consensus 181 ~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg---Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 181 WDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG---GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred EEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC---CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc
Confidence 999987 7889999999999999999999999963 478999999855 45555556999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCCC
Q 011971 441 GDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 441 ~Dg~I~iW~l~~~~~~~ 457 (474)
-|+.+++|++.+-....
T Consensus 258 LD~~VKVfd~t~~Kvv~ 274 (487)
T KOG0310|consen 258 LDRHVKVFDTTNYKVVH 274 (487)
T ss_pred cccceEEEEccceEEEE
Confidence 99999999976654333
No 72
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=1.3e-26 Score=222.48 Aligned_cols=294 Identities=16% Similarity=0.262 Sum_probs=228.1
Q ss_pred CCCCCCCCcccccCCCCCCCcceeeeeCCC--CcEEEEEcCCeEEEEeCCCCCE----EEEEecCCCCCEEEEEEcCCCC
Q 011971 148 PRKVPRSPYKILDAPALQDDFYLNLVDWSS--HNVLAVGLGNCVYLWNACSSKV----TKLCDLGIDDSVCSVGWANRNT 221 (474)
Q Consensus 148 ~r~i~~~p~~~l~ap~~~~d~~v~~l~~s~--~~~la~~~d~~V~lwd~~~~~~----~~~~~~~~~~~V~~v~~sp~g~ 221 (474)
..+||...+-.|.. ..-.|..+...+ ..+++++.|..|++||...... .+.+.......|.++.|++.|.
T Consensus 152 ~~~IP~shEi~l~h----gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~ 227 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKH----GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD 227 (641)
T ss_pred hhcCCccceEeccC----CceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCC
Confidence 44566555444432 234577888877 5788888999999999875422 2223224467899999999999
Q ss_pred EEEEEeCCCcEEEecCCCCeEEEEe------------cCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEee
Q 011971 222 HLAVGTSHGKVQIWDASRCKRVRTM------------EGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSK 286 (474)
Q Consensus 222 ~la~gs~dg~I~iwd~~~~~~~~~~------------~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~ 286 (474)
.|++.+.....+|+|-...+.+... +||...++|.+|+| ..|++++.||++++||+.........
T Consensus 228 ~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qV 307 (641)
T KOG0772|consen 228 QILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQV 307 (641)
T ss_pred eEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeE
Confidence 9999998999999997655444332 48999999999996 68999999999999999876543333
Q ss_pred e-----cCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--ceE-EEccCCC--cEEEEEECCCCCcEEEEecCCC
Q 011971 287 L-----SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ--PVL-KYCEHTA--AVKAIAWSPHLHGLLASGGGTA 356 (474)
Q Consensus 287 ~-----~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~--~~~-~~~~h~~--~V~~l~~sp~~~~ll~sg~Gt~ 356 (474)
+ .+-.-.++.++|++||++||+|+.||.|.+|+..... +.. .-..|.. .|+||.|+++|++|+.-| .
T Consensus 308 ik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg---~ 384 (641)
T KOG0772|consen 308 IKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG---F 384 (641)
T ss_pred EeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc---C
Confidence 3 2344578999999999999999999999999986432 222 2346776 899999999999776655 6
Q ss_pred CCeEEEEECCCCce-eeee---cCCCCeEEEEEcCCCCeEEEEE----ecCCCeEEEEECCCCceeEEEcCCCccEEEEE
Q 011971 357 DRCIRFWNTTTNTH-LSCM---DTGSQVCNLVWSKNVNELVSTH----GYSQNQIIVWRYPTMSKLATLTGHTFRVLYLA 428 (474)
Q Consensus 357 d~~I~iwd~~~~~~-~~~~---~~~~~v~~l~~s~~~~~l~~~~----g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~ 428 (474)
|+++++||++..+. +... .....-+.++|||+.+.+++.+ +...|.+.+||..+...+..+.-.+..|..+.
T Consensus 385 D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~ 464 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCL 464 (641)
T ss_pred CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEe
Confidence 99999999997543 3332 2445678899999999999832 12357899999999999999988888999999
Q ss_pred ECCCCCEEEEEeCCCcEEEE
Q 011971 429 ISPDGQTIVTGAGDETLRFW 448 (474)
Q Consensus 429 ~spdg~~l~t~s~Dg~I~iW 448 (474)
|+|.=+.|+.|++||++++|
T Consensus 465 WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 465 WHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred ecchhhheeeecCCCceEEE
Confidence 99988889999999999886
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.2e-26 Score=240.67 Aligned_cols=290 Identities=21% Similarity=0.311 Sum_probs=232.0
Q ss_pred CCcceeeeeCCCC-c-EEEEE--cCCeEEEEeCCCC--------C--EEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCC
Q 011971 166 DDFYLNLVDWSSH-N-VLAVG--LGNCVYLWNACSS--------K--VTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHG 230 (474)
Q Consensus 166 ~d~~v~~l~~s~~-~-~la~~--~d~~V~lwd~~~~--------~--~~~~~~~-~~~~~V~~v~~sp~g~~la~gs~dg 230 (474)
++..+..++.+|+ . +.++| .|+.+.||+...- . ...++.+ .|.+.|+|+.|++||.+||+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 4555889999983 3 44444 4778889987521 0 1122222 7899999999999999999999999
Q ss_pred cEEEecCCC------------------CeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCc
Q 011971 231 KVQIWDASR------------------CKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGH 290 (474)
Q Consensus 231 ~I~iwd~~~------------------~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h 290 (474)
.|.||+... -+.+..+.+|...|..++|++ .+|++++.|++|.+|+.++. ..+..+.+|
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeecc
Confidence 999998762 246778899999999999994 79999999999999999999 579999999
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccC------CCcEEEEEECCCCCcEEEEecCC--CCCeEEE
Q 011971 291 KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH------TAAVKAIAWSPHLHGLLASGGGT--ADRCIRF 362 (474)
Q Consensus 291 ~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h------~~~V~~l~~sp~~~~ll~sg~Gt--~d~~I~i 362 (474)
.+.|.++.|.|-|++||+-+.|++|+||++.+....+.+.++ ...+..+.|+|||++|.+..+ . .-.++.|
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA-~n~~~~~~~I 249 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA-VNGGKSTIAI 249 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh-ccCCcceeEE
Confidence 999999999999999999999999999998877666666543 346789999999996655432 1 1345888
Q ss_pred EECCCCce-eeeecCCCCeEEEEEcCC------C---------CeEEEEEecCCCeEEEEECCCCceeEEEc-CCCccEE
Q 011971 363 WNTTTNTH-LSCMDTGSQVCNLVWSKN------V---------NELVSTHGYSQNQIIVWRYPTMSKLATLT-GHTFRVL 425 (474)
Q Consensus 363 wd~~~~~~-~~~~~~~~~v~~l~~s~~------~---------~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~h~~~V~ 425 (474)
.+-.+.+. ...+.|..++.++.|+|. . .|.+++.|+.|+.|.||.....+++.... -....|.
T Consensus 250 ieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~ 329 (942)
T KOG0973|consen 250 IERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIV 329 (942)
T ss_pred EecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCcee
Confidence 88776663 455568889999999872 1 23355559999999999998888876654 2456799
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 011971 426 YLAISPDGQTIVTGAGDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 426 ~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~ 457 (474)
+++|+|||..|+.++.||+|.+..+.++....
T Consensus 330 DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~ 361 (942)
T KOG0973|consen 330 DMSWSPDGFSLFACSLDGTVALIHFEEKELGV 361 (942)
T ss_pred eeeEcCCCCeEEEEecCCeEEEEEcchHHhCc
Confidence 99999999999999999999999999876443
No 74
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-25 Score=204.54 Aligned_cols=247 Identities=15% Similarity=0.254 Sum_probs=208.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeC--CCcEEEEECcCCcc
Q 011971 207 IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSR--DKSILQRDIRAQED 282 (474)
Q Consensus 207 ~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~--dg~I~iwd~~~~~~ 282 (474)
..+.|.+|.|+.+|.+|++++.|.+++|||..+++.++++..+.-.|..++|. ++.++.++. |.+|+..++.+.+
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk- 91 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK- 91 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc-
Confidence 46899999999999999999999999999999999999999888888888885 567777776 8899999998877
Q ss_pred eEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEE
Q 011971 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (474)
Q Consensus 283 ~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~i 362 (474)
.++-+.||...|.+|+.+|-+..+++++.|++|++||++..++...+.... -..++|+|.|- ++|++. ....|++
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GL-ifA~~~--~~~~IkL 166 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGL-IFALAN--GSELIKL 166 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCc-EEEEec--CCCeEEE
Confidence 799999999999999999999999999999999999999887766654333 34689999985 666665 3349999
Q ss_pred EECCCC--ceeeeec----CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccE---EEEEECCCC
Q 011971 363 WNTTTN--THLSCMD----TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRV---LYLAISPDG 433 (474)
Q Consensus 363 wd~~~~--~~~~~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V---~~l~~spdg 433 (474)
||++.. .+...+. ...+...+.||++|++++. +...+.+++.|.-+|..+.++.++...- ...+|+||+
T Consensus 167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl--sT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL--STNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred EEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE--EeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence 999874 2333333 3567899999999999999 6689999999999999999998775433 678899999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCCCCC
Q 011971 434 QTIVTGAGDETLRFWNVFPSPKSQNTDS 461 (474)
Q Consensus 434 ~~l~t~s~Dg~I~iW~l~~~~~~~~~~~ 461 (474)
++|++|+.||+|.+|++.++.+......
T Consensus 245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred cEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 9999999999999999988876655433
No 75
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=7.3e-27 Score=211.54 Aligned_cols=240 Identities=22% Similarity=0.360 Sum_probs=205.2
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCC------------------CeEEEEecCCCCcEEEEEecC--CEEEE
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR------------------CKRVRTMEGHRLRVGALAWSS--SLLSS 265 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~------------------~~~~~~~~~h~~~V~~l~~~~--~~l~s 265 (474)
.|..++.+-+|++||.++|+|+.|..|+|.|++. .-.++++-.|...|+++.|+| .+|++
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence 6899999999999999999999999999999861 135778889999999999996 79999
Q ss_pred EeCCCcEEEEECcCCcc-eEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEE---ccCCCcEEEEEE
Q 011971 266 GSRDKSILQRDIRAQED-FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKY---CEHTAAVKAIAW 341 (474)
Q Consensus 266 gs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~---~~h~~~V~~l~~ 341 (474)
|++|++|+++|+..... ...+.......|.+|.|+|.|.+|++|..-.++++||+.+.++...- ..|.+.|+++.+
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY 269 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEe
Confidence 99999999999976441 11122334578999999999999999999999999999988765443 358999999999
Q ss_pred CCCCCcEEEEecCCCCCeEEEEECCCCceeeeec---CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEE-
Q 011971 342 SPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD---TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATL- 417 (474)
Q Consensus 342 sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l- 417 (474)
++.++ ++++++ .||.|++||--+++|+.++. .++.||+..|..+++++++ .+.|..+++|.+.++..+.++
T Consensus 270 s~t~~-lYvTaS--kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs--SG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 270 SSTGS-LYVTAS--KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILS--SGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred cCCcc-EEEEec--cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEee--cCCcceeeeeeecCCceEEEEe
Confidence 99987 888876 99999999999999998886 4677999999999999999 679999999999776554432
Q ss_pred ------------------------------------------------cCCCccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 011971 418 ------------------------------------------------TGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449 (474)
Q Consensus 418 ------------------------------------------------~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~ 449 (474)
.+|++.+..+.-||.+.-++||+.|-.+|||-
T Consensus 345 GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 345 GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred cCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 15777888889999999999999999999996
Q ss_pred C
Q 011971 450 V 450 (474)
Q Consensus 450 l 450 (474)
-
T Consensus 425 r 425 (430)
T KOG0640|consen 425 R 425 (430)
T ss_pred e
Confidence 3
No 76
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=2.4e-26 Score=218.28 Aligned_cols=253 Identities=26% Similarity=0.463 Sum_probs=209.6
Q ss_pred CEEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEecCCCCe----------EEEEecCCCCcEEEEEecC---CEE
Q 011971 198 KVTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRCK----------RVRTMEGHRLRVGALAWSS---SLL 263 (474)
Q Consensus 198 ~~~~~~~~~~~~~V~~v~~sp~g-~~la~gs~dg~I~iwd~~~~~----------~~~~~~~h~~~V~~l~~~~---~~l 263 (474)
++.....+.|.+.|+.+..-|.. ..+|+++..+.|.|||..+.. .-..+.+|...-..|+|+. ..|
T Consensus 114 ~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 114 KVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred ceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeE
Confidence 33333445789999999999966 577778889999999986432 1226789999888899984 689
Q ss_pred EEEeCCCcEEEEECcCCcc------eEeeecCcCCCEEEEEEec-CCCEEEEEeCCCcEEEEECC--CCcceEEEccCCC
Q 011971 264 SSGSRDKSILQRDIRAQED------FVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQH--STQPVLKYCEHTA 334 (474)
Q Consensus 264 ~sgs~dg~I~iwd~~~~~~------~~~~~~~h~~~V~~l~~sp-d~~~lasg~~Dg~v~iwd~~--~~~~~~~~~~h~~ 334 (474)
++|+.|+.|.+||+..... ....+.+|...|..++|++ +..+|++++.|+.+.|||++ +.++.....+|.+
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 9999999999999986542 3567889999999999999 56789999999999999999 5677778889999
Q ss_pred cEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-eeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC-
Q 011971 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-HLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM- 411 (474)
Q Consensus 335 ~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~-~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~- 411 (474)
.|.|++|+|.+..+||+|+ .|++|.+||+++.. ++..+. +...|.++.|+|+...+++++| .|+.+.|||+...
T Consensus 274 ~vn~~~fnp~~~~ilAT~S--~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg-~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGS--ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG-TDRRLNVWDLSRIG 350 (422)
T ss_pred ceeEEEeCCCCCceEEecc--CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc-cCCcEEEEeccccc
Confidence 9999999999999999987 89999999999754 444444 6778999999999888777644 9999999998642
Q ss_pred -------------ceeEEEcCCCccEEEEEECCCCC-EEEEEeCCCcEEEEeCCCC
Q 011971 412 -------------SKLATLTGHTFRVLYLAISPDGQ-TIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 412 -------------~~~~~l~~h~~~V~~l~~spdg~-~l~t~s~Dg~I~iW~l~~~ 453 (474)
+.+..-.||...|..+.|+|+.. .|++.+.|+.+.||++...
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 33566679999999999999765 5678899999999998744
No 77
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=2.6e-25 Score=228.62 Aligned_cols=224 Identities=19% Similarity=0.313 Sum_probs=178.1
Q ss_pred EeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcc-------eEeeecCcCCCEE
Q 011971 226 GTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQED-------FVSKLSGHKSEVC 295 (474)
Q Consensus 226 gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~-------~~~~~~~h~~~V~ 295 (474)
|+.+|.|++|+......+..+.+|...|.+++|++ ++|++|+.||.|++||+..... .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 56688999999888888889999999999999985 5899999999999999976431 3446788999999
Q ss_pred EEEEecCCCE-EEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee
Q 011971 296 GLKWSYDNRE-LASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (474)
Q Consensus 296 ~l~~spd~~~-lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~ 374 (474)
+++|+|++.. |++++.|++|+|||+++++.+..+. |...|.+++|+|+|. ++++++ .|+.|++||+++++.+..+
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~-lLat~s--~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN-LLSGTC--VGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC-EEEEEe--cCCEEEEEECCCCcEEEEE
Confidence 9999998875 5789999999999999998877774 667899999999988 555554 7999999999999988877
Q ss_pred cCC-CCe-----EEEEEcCCCCeEEEEEecCC---CeEEEEECCC-CceeEEEc--CCCccEEEEEECCCCCEEEEEeCC
Q 011971 375 DTG-SQV-----CNLVWSKNVNELVSTHGYSQ---NQIIVWRYPT-MSKLATLT--GHTFRVLYLAISPDGQTIVTGAGD 442 (474)
Q Consensus 375 ~~~-~~v-----~~l~~s~~~~~l~~~~g~~d---g~I~iwd~~~-~~~~~~l~--~h~~~V~~l~~spdg~~l~t~s~D 442 (474)
..+ ..+ ....|++++.+++++ |.++ ++|+|||++. .+++..+. .+.+.+......++|.++++|++|
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTt-G~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILST-GFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEE-EcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence 633 332 223456888888885 4333 4899999985 45555443 333444444455679999999999
Q ss_pred CcEEEEeCCCCC
Q 011971 443 ETLRFWNVFPSP 454 (474)
Q Consensus 443 g~I~iW~l~~~~ 454 (474)
++|++|++..+.
T Consensus 285 ~tIr~~e~~~~~ 296 (568)
T PTZ00420 285 GNCRYYQHSLGS 296 (568)
T ss_pred CeEEEEEccCCc
Confidence 999999997653
No 78
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.7e-25 Score=229.85 Aligned_cols=242 Identities=12% Similarity=0.208 Sum_probs=185.6
Q ss_pred CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEecCCCCe--------EEEEecCCCCcEEEE
Q 011971 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASRCK--------RVRTMEGHRLRVGAL 256 (474)
Q Consensus 186 d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~-g~~la~gs~dg~I~iwd~~~~~--------~~~~~~~h~~~V~~l 256 (474)
.+.|.+|+.........+. +|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++. .+..+.+|...|.++
T Consensus 53 ~gvI~L~~~~r~~~v~~L~-gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sV 131 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLK-GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISII 131 (568)
T ss_pred eeEEEeeecCCCceEEEEc-CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEE
Confidence 5678999987665554443 89999999999996 7899999999999999997542 345678999999999
Q ss_pred EecC---CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCC
Q 011971 257 AWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHT 333 (474)
Q Consensus 257 ~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~ 333 (474)
+|++ .+|++++.|+.|++||+++... ...+. |...|.+++|+++|.+|++++.|+.|+|||+++++.+.++.+|.
T Consensus 132 af~P~g~~iLaSgS~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 132 DWNPMNYYIMCSSGFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EECCCCCeEEEEEeCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 9996 3568999999999999998763 44443 56789999999999999999999999999999999999999998
Q ss_pred CcEEEE-----EECCCCCcEEEEecC-CCCCeEEEEECCC-CceeeeecCCCCeE--EEEEcC-CCCeEEEEEecCCCeE
Q 011971 334 AAVKAI-----AWSPHLHGLLASGGG-TADRCIRFWNTTT-NTHLSCMDTGSQVC--NLVWSK-NVNELVSTHGYSQNQI 403 (474)
Q Consensus 334 ~~V~~l-----~~sp~~~~ll~sg~G-t~d~~I~iwd~~~-~~~~~~~~~~~~v~--~l~~s~-~~~~l~~~~g~~dg~I 403 (474)
+.+.+. .|++++..++++|.. ..++.|+|||+++ +.++..+....... ...|.+ ++..+++ |..|+.|
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ls--GkGD~tI 287 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLI--GKGDGNC 287 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEE--EECCCeE
Confidence 765433 345787766766631 1125899999995 56666555443322 233444 4666666 8899999
Q ss_pred EEEECCCCceeEEEc--CCCccEEEEEECCCC
Q 011971 404 IVWRYPTMSKLATLT--GHTFRVLYLAISPDG 433 (474)
Q Consensus 404 ~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg 433 (474)
++|++..+. +..+. .+..++..++|.|..
T Consensus 288 r~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 288 RYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 999997653 33332 256778899999964
No 79
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.7e-24 Score=187.06 Aligned_cols=281 Identities=19% Similarity=0.276 Sum_probs=224.9
Q ss_pred CCCCcceeeeeCCC-CcEEEEEcC-CeEEEEeCC------CC------CEEEEEe--cCCCCCEEEEEEcCCCCEEEEEe
Q 011971 164 LQDDFYLNLVDWSS-HNVLAVGLG-NCVYLWNAC------SS------KVTKLCD--LGIDDSVCSVGWANRNTHLAVGT 227 (474)
Q Consensus 164 ~~~d~~v~~l~~s~-~~~la~~~d-~~V~lwd~~------~~------~~~~~~~--~~~~~~V~~v~~sp~g~~la~gs 227 (474)
+.+...+..++|.| +.+.++|.+ .+++|.... .+ ...-+++ ..|.+.|.|.+|+|+|.+||+|+
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 45666799999999 889999875 466665321 11 1111221 25789999999999999999999
Q ss_pred CCCcEEEecCCCCeE-----EEEecCCCCcEEEEEec------CCEEEEEe-CCCcEEEEECcCCcceEeeecCcCCCEE
Q 011971 228 SHGKVQIWDASRCKR-----VRTMEGHRLRVGALAWS------SSLLSSGS-RDKSILQRDIRAQEDFVSKLSGHKSEVC 295 (474)
Q Consensus 228 ~dg~I~iwd~~~~~~-----~~~~~~h~~~V~~l~~~------~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 295 (474)
.|.+|++.-.+...+ -..+.-|.+.|..++|- +.+|++++ .|..|++-|...++ ....+.+|.+.|.
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-~~~a~sghtghil 187 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-GFHALSGHTGHIL 187 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC-cceeecCCcccEE
Confidence 999999976654332 23456799999999995 24566554 57788888888776 5788899999998
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEcc-------CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011971 296 GLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE-------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368 (474)
Q Consensus 296 ~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~-------h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~ 368 (474)
++ ++-++-.+++|+.|.+|++||++-...+.++.. ...+|.+++..|.|+ |+++|- .|....+||++.+
T Consensus 188 al-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~--~dssc~lydirg~ 263 (350)
T KOG0641|consen 188 AL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGH--ADSSCMLYDIRGG 263 (350)
T ss_pred EE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeecc--CCCceEEEEeeCC
Confidence 87 355788999999999999999998887777642 236899999999987 888876 8999999999999
Q ss_pred ceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC----ceeEEEcCCCccEEEEEECCCCCEEEEEeCCC
Q 011971 369 THLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM----SKLATLTGHTFRVLYLAISPDGQTIVTGAGDE 443 (474)
Q Consensus 369 ~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg 443 (474)
..++.+. +...|.++.|+|...++++ ++.|..|++-|+... -++.....|...+..+.|+|..-.+++.+.|.
T Consensus 264 r~iq~f~phsadir~vrfsp~a~yllt--~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk 341 (350)
T KOG0641|consen 264 RMIQRFHPHSADIRCVRFSPGAHYLLT--CSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK 341 (350)
T ss_pred ceeeeeCCCccceeEEEeCCCceEEEE--ecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc
Confidence 9998876 6678999999999999999 889999999998632 22344457999999999999988899999999
Q ss_pred cEEEEeCC
Q 011971 444 TLRFWNVF 451 (474)
Q Consensus 444 ~I~iW~l~ 451 (474)
++.+|-+.
T Consensus 342 t~tlwa~~ 349 (350)
T KOG0641|consen 342 TATLWALN 349 (350)
T ss_pred eEEEeccC
Confidence 99999764
No 80
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.5e-26 Score=215.10 Aligned_cols=247 Identities=17% Similarity=0.252 Sum_probs=211.7
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC---eEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCC
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC---KRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQ 280 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~---~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~ 280 (474)
.|.+.|.-+.||++|+|||+++.|.+..||++... +...++.+|..+|.-+.|+| .+|++++.|..+.+||+.++
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg 301 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG 301 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence 78999999999999999999999999999987544 45788899999999999996 69999999999999999998
Q ss_pred cceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccC-CCcEEEEEECCCCCcEEEEecCCCCCe
Q 011971 281 EDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEH-TAAVKAIAWSPHLHGLLASGGGTADRC 359 (474)
Q Consensus 281 ~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h-~~~V~~l~~sp~~~~ll~sg~Gt~d~~ 359 (474)
.....--.+|...+.+++|.|||..+++|+.|+.+..||+.. ......++- ...|.+++..+||+++++.+ .|..
T Consensus 302 d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~---~d~~ 377 (519)
T KOG0293|consen 302 DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVT---VDKK 377 (519)
T ss_pred hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEe---cccc
Confidence 843333334568899999999999999999999999999874 334444432 34689999999999999987 6999
Q ss_pred EEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCcc--EEEEEECC-CCCEE
Q 011971 360 IRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFR--VLYLAISP-DGQTI 436 (474)
Q Consensus 360 I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~--V~~l~~sp-dg~~l 436 (474)
|++|+..+......+....+|+++..|.+++++++ .-.+..|++||+.....+..+.||... |..-+|-- +..++
T Consensus 378 i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv--nL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fi 455 (519)
T KOG0293|consen 378 IRLYNREARVDRGLISEEQPITSFSISKDGKLALV--NLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFI 455 (519)
T ss_pred eeeechhhhhhhccccccCceeEEEEcCCCcEEEE--EcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceE
Confidence 99999998888888888999999999999999999 778999999999999999999999754 44455654 55799
Q ss_pred EEEeCCCcEEEEeCCCCCCCCC
Q 011971 437 VTGAGDETLRFWNVFPSPKSQN 458 (474)
Q Consensus 437 ~t~s~Dg~I~iW~l~~~~~~~~ 458 (474)
++|++|+.|+||+-..+.....
T Consensus 456 aSGSED~kvyIWhr~sgkll~~ 477 (519)
T KOG0293|consen 456 ASGSEDSKVYIWHRISGKLLAV 477 (519)
T ss_pred EecCCCceEEEEEccCCceeEe
Confidence 9999999999999988765543
No 81
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=1.5e-25 Score=207.35 Aligned_cols=257 Identities=19% Similarity=0.245 Sum_probs=223.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcce
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF 283 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 283 (474)
.|.+.|.+++.+|+.+++|+|+.|..-.||++.++.....+.+|...|+++.|+ +.+|++|..+|.|+||+..++..
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~- 140 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE- 140 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce-
Confidence 799999999999999999999999999999999999999999999999999998 68999999999999999998874
Q ss_pred EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEE
Q 011971 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (474)
Q Consensus 284 ~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iw 363 (474)
...+...-..|.-+.|+|-+..|+.|+.||.|.+|.+.++...+.+.+|+.++++=.|.|+|+.++. +. .||+|++|
T Consensus 141 ~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t-gy--~dgti~~W 217 (399)
T KOG0296|consen 141 QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILT-GY--DDGTIIVW 217 (399)
T ss_pred EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEE-Ee--cCceEEEE
Confidence 4445456678999999999999999999999999999998888899999999999999999985554 43 79999999
Q ss_pred ECCCCceeeeecC--CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEc--------CCCccEEEE---EEC
Q 011971 364 NTTTNTHLSCMDT--GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLT--------GHTFRVLYL---AIS 430 (474)
Q Consensus 364 d~~~~~~~~~~~~--~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~--------~h~~~V~~l---~~s 430 (474)
|..+++++..+.. +....++.++..+..++. |..++.+++-...+++.+.... .+...+.++ .++
T Consensus 218 n~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~--g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s 295 (399)
T KOG0296|consen 218 NPKTGQPLHKITQAEGLELPCISLNLAGSTLTK--GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS 295 (399)
T ss_pred ecCCCceeEEecccccCcCCccccccccceeEe--ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc
Confidence 9999999888763 445778888888888888 8899999999988888877665 344444444 445
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCCCCCCCCCcccCCc
Q 011971 431 PDGQTIVTGAGDETLRFWNVFPSPKSQNTDSEIGASSL 468 (474)
Q Consensus 431 pdg~~l~t~s~Dg~I~iW~l~~~~~~~~~~~~~~~~s~ 468 (474)
..=.+.|+|+-||+|.|||+.........+++.++..+
T Consensus 296 s~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l 333 (399)
T KOG0296|consen 296 SKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKL 333 (399)
T ss_pred cccchhhcccccceEEEEecccchhheeccCCCceEEE
Confidence 56668899999999999999999988888888876544
No 82
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=9.4e-26 Score=231.06 Aligned_cols=240 Identities=27% Similarity=0.383 Sum_probs=215.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE-ecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcce
Q 011971 207 IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT-MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF 283 (474)
Q Consensus 207 ~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 283 (474)
+...+.+..|. +.++++++.+++|++||..++..+.. +.+|.+.|.++++. +++|++|+.|.++++||..++. +
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-C 283 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-C 283 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-E
Confidence 46788889898 56899999999999999999999888 99999999999998 8999999999999999988877 7
Q ss_pred EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEE
Q 011971 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (474)
Q Consensus 284 ~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iw 363 (474)
...+.+|...|.++... ...+++|+.|.+|++|++.++..+..+.+|.++|.++..+ +. ++++|+ .|+.|++|
T Consensus 284 ~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~-~lvsgs--~d~~v~VW 356 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EP-LLVSGS--YDGTVKVW 356 (537)
T ss_pred EEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CC-EEEEEe--cCceEEEE
Confidence 99999999999998864 4588889999999999999999999998899999999999 33 777765 89999999
Q ss_pred ECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC-ceeEEEcCCCccEEEEEECCCCCEEEEEeC
Q 011971 364 NTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM-SKLATLTGHTFRVLYLAISPDGQTIVTGAG 441 (474)
Q Consensus 364 d~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~t~s~ 441 (474)
|+.+++++..+. |...|.++.+... ..+++ |+.|+.|++||+.++ +++.++.+|...|..+.+ .+++|++++.
T Consensus 357 ~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~S--gs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~a 431 (537)
T KOG0274|consen 357 DPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLS--GSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSA 431 (537)
T ss_pred EhhhceeeeeecCCcceEEEEEecCc-ceEEe--eeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccc
Confidence 999999999987 5678999988776 77777 889999999999999 999999999999977776 6789999999
Q ss_pred CCcEEEEeCCCCCCCCCCCC
Q 011971 442 DETLRFWNVFPSPKSQNTDS 461 (474)
Q Consensus 442 Dg~I~iW~l~~~~~~~~~~~ 461 (474)
|++|++||+.++...+..+.
T Consensus 432 D~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 432 DGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred cccEEEeecccCceeeeecc
Confidence 99999999999887766544
No 83
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.3e-25 Score=211.57 Aligned_cols=275 Identities=24% Similarity=0.374 Sum_probs=228.6
Q ss_pred cceeeeeCCC--CcEEEEEcCCeEEEEeCCCCCEE-EEEe----------------cCCCCCEEEEEEcCCCCEEEEEeC
Q 011971 168 FYLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVT-KLCD----------------LGIDDSVCSVGWANRNTHLAVGTS 228 (474)
Q Consensus 168 ~~v~~l~~s~--~~~la~~~d~~V~lwd~~~~~~~-~~~~----------------~~~~~~V~~v~~sp~g~~la~gs~ 228 (474)
..+.+|..++ ...+.++.++.|.-|++.+++.. .+++ -.|...+.+++.++||+|||+|+.
T Consensus 143 ~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~ 222 (479)
T KOG0299|consen 143 LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGR 222 (479)
T ss_pred CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCC
Confidence 4478888888 47788888999999999888743 1111 156788999999999999999999
Q ss_pred CCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEE
Q 011971 229 HGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL 306 (474)
Q Consensus 229 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 306 (474)
|..|+||+..+.+.+..+.+|.+.|.+++|- .+.|++++.|+.|++|++.... .+.++.+|...|.+|....-++.+
T Consensus 223 d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-~vetlyGHqd~v~~IdaL~reR~v 301 (479)
T KOG0299|consen 223 DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-YVETLYGHQDGVLGIDALSRERCV 301 (479)
T ss_pred CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-HHHHHhCCccceeeechhcccceE
Confidence 9999999999999999999999999999997 5899999999999999998776 688899999999999998888888
Q ss_pred EEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--C--------
Q 011971 307 ASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--T-------- 376 (474)
Q Consensus 307 asg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~--~-------- 376 (474)
-+|+.|.++++|++.. +....+.+|.+.+.|++|-.+.+ +++|+ .+|.|.+|++.+.+++.... |
T Consensus 302 tVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~H--fvsGS--dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~ 376 (479)
T KOG0299|consen 302 TVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEH--FVSGS--DNGSIALWSLLKKKPLFTSRLAHGVIPELDP 376 (479)
T ss_pred EeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccc--eeecc--CCceEEEeeecccCceeEeeccccccCCccc
Confidence 8889999999999954 34456778999999999998754 56665 89999999999988876553 1
Q ss_pred ---CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC----ceeEEEcCCCccEEEEEECCCCCEEEEEeC-CCcEEEE
Q 011971 377 ---GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM----SKLATLTGHTFRVLYLAISPDGQTIVTGAG-DETLRFW 448 (474)
Q Consensus 377 ---~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~spdg~~l~t~s~-Dg~I~iW 448 (474)
...|++++..+....+++ |+.+|.|++|.+..+ .++..+. -.+.|++|+|+++|+.|++|.+ .-.+--|
T Consensus 377 ~~~~~Witsla~i~~sdL~as--GS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 377 VNGNFWITSLAVIPGSDLLAS--GSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred cccccceeeeEecccCceEEe--cCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccccccee
Confidence 126889999999999999 999999999999866 4455554 5778999999999997776644 4444445
Q ss_pred eCC
Q 011971 449 NVF 451 (474)
Q Consensus 449 ~l~ 451 (474)
-..
T Consensus 454 ~~~ 456 (479)
T KOG0299|consen 454 WCL 456 (479)
T ss_pred eEe
Confidence 443
No 84
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=4.6e-26 Score=217.88 Aligned_cols=277 Identities=22% Similarity=0.274 Sum_probs=230.1
Q ss_pred CCcceeeeeCCC-CcEEEEEcCCeEEEEeCCCCC---EEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC
Q 011971 166 DDFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSK---VTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC 240 (474)
Q Consensus 166 ~d~~v~~l~~s~-~~~la~~~d~~V~lwd~~~~~---~~~~~~~-~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~ 240 (474)
+.-.|..+..+. ...+..|..|+|+|||+.... .+..++. .....|.++.+.|||+.|++|+.-.++.|||+...
T Consensus 418 HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAap 497 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAP 497 (705)
T ss_pred cCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCC
Confidence 333467777776 677788888999999986431 2222222 34678999999999999999999999999999765
Q ss_pred e--EEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEE
Q 011971 241 K--RVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (474)
Q Consensus 241 ~--~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~ 316 (474)
. ....+......+.+++.++ ++.++++.||.|.|||++... .+..+.+|...+.||.+++||..|.+|+-|++|+
T Consensus 498 TprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascIdis~dGtklWTGGlDntvR 576 (705)
T KOG0639|consen 498 TPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVR 576 (705)
T ss_pred CcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEEecCCCceeecCCCcccee
Confidence 4 3334444445667777775 789999999999999999876 7899999999999999999999999999999999
Q ss_pred EEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEE
Q 011971 317 VWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTH 396 (474)
Q Consensus 317 iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~ 396 (474)
.||++++..+... .....|.++-++|.+.++++ | -+.+.+.+......+..+...+.+-|.++.|.+.|+++++
T Consensus 577 cWDlregrqlqqh-dF~SQIfSLg~cP~~dWlav-G--Mens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvS-- 650 (705)
T KOG0639|consen 577 CWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAV-G--MENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVS-- 650 (705)
T ss_pred ehhhhhhhhhhhh-hhhhhheecccCCCccceee-e--cccCcEEEEecCCccceeecccccEEEEEEecccCceeee--
Confidence 9999998776554 44678999999999996665 3 3788899888877776666678899999999999999999
Q ss_pred ecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 011971 397 GYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 397 g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l 450 (474)
.+.|+-+..|..+-+..+...+. ...|+++.+|.|.++|+||++|....+|.+
T Consensus 651 tGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 651 TGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 45999999999999999888764 567999999999999999999999998876
No 85
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=3.3e-24 Score=207.57 Aligned_cols=277 Identities=13% Similarity=0.101 Sum_probs=208.8
Q ss_pred EEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec
Q 011971 181 LAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHL-AVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS 259 (474)
Q Consensus 181 la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~l-a~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~ 259 (474)
++.+.++.|++||..+++....+.. ...+.+++|+|+|..+ ++++.++.|++||..+++.+..+..+.. +..++|+
T Consensus 5 ~s~~~d~~v~~~d~~t~~~~~~~~~--~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~ 81 (300)
T TIGR03866 5 VSNEKDNTISVIDTATLEVTRTFPV--GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALH 81 (300)
T ss_pred EEecCCCEEEEEECCCCceEEEEEC--CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEEC
Confidence 4455689999999999988777753 3447789999999876 5667789999999999988877765443 4667887
Q ss_pred C--CEEE-EEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCC-cEEEEECCCCcceEEEccCCCc
Q 011971 260 S--SLLS-SGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN-RLFVWNQHSTQPVLKYCEHTAA 335 (474)
Q Consensus 260 ~--~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg-~v~iwd~~~~~~~~~~~~h~~~ 335 (474)
+ +.++ +++.++.|.+||+++.. .+..+. +...+.+++|+|++.+++++..++ .+.+||..+++....+.. ...
T Consensus 82 ~~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~ 158 (300)
T TIGR03866 82 PNGKILYIANEDDNLVTVIDIETRK-VLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQR 158 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCe-EEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCC
Confidence 4 5554 45668999999998765 344443 234578899999999999988775 577889988776655432 334
Q ss_pred EEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC--------CCeEEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011971 336 VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG--------SQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (474)
Q Consensus 336 V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~--------~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 407 (474)
+.+++|+|++..+++++. .++.|++||+.+++.+..+... .....+.|+++++.++++ ...++.|.+||
T Consensus 159 ~~~~~~s~dg~~l~~~~~--~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~-~~~~~~i~v~d 235 (300)
T TIGR03866 159 PRFAEFTADGKELWVSSE--IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA-LGPANRVAVVD 235 (300)
T ss_pred ccEEEECCCCCEEEEEcC--CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE-cCCCCeEEEEE
Confidence 578999999987777653 6899999999999877665421 124578899999997764 33567899999
Q ss_pred CCCCceeEEEcCCCccEEEEEECCCCCEEEEE-eCCCcEEEEeCCCCCCCCCCCCCcccCC
Q 011971 408 YPTMSKLATLTGHTFRVLYLAISPDGQTIVTG-AGDETLRFWNVFPSPKSQNTDSEIGASS 467 (474)
Q Consensus 408 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~-s~Dg~I~iW~l~~~~~~~~~~~~~~~~s 467 (474)
..+++.+..+. +...+.+++|+|+|++|+++ +.+|.|++||+..+......+.....+.
T Consensus 236 ~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~ 295 (300)
T TIGR03866 236 AKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWG 295 (300)
T ss_pred CCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccce
Confidence 99888776553 34578999999999999886 4689999999998876555444443333
No 86
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.7e-25 Score=200.95 Aligned_cols=243 Identities=22% Similarity=0.297 Sum_probs=198.7
Q ss_pred CCCCCEEEEEEcC-CCCEEEEEeCCCcEEEecCCC-CeEE-EEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCC
Q 011971 206 GIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASR-CKRV-RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQ 280 (474)
Q Consensus 206 ~~~~~V~~v~~sp-~g~~la~gs~dg~I~iwd~~~-~~~~-~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~ 280 (474)
..++.|.+|+||| ...++++|+.||+|++|+++. +..+ +....|.++|.+++|+ +..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 5578999999999 556777899999999999987 3332 4456799999999998 689999999999999999998
Q ss_pred cceEeeecCcCCCEEEEEEecCCC--EEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCC
Q 011971 281 EDFVSKLSGHKSEVCGLKWSYDNR--ELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR 358 (474)
Q Consensus 281 ~~~~~~~~~h~~~V~~l~~spd~~--~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~ 358 (474)
+ +..+..|..+|..+.|-+... .|++|+.|.+|+.||.+...++.++. -...++++..-.. +++.+. .++
T Consensus 105 Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~p---m~vVat--a~r 176 (347)
T KOG0647|consen 105 Q--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVLYP---MAVVAT--AER 176 (347)
T ss_pred C--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhccCc---eeEEEe--cCC
Confidence 6 677889999999999988665 89999999999999999999998884 3556777665433 444443 799
Q ss_pred eEEEEECCCCceeee-e--cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC--ceeEEEcCCCc---------cE
Q 011971 359 CIRFWNTTTNTHLSC-M--DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM--SKLATLTGHTF---------RV 424 (474)
Q Consensus 359 ~I~iwd~~~~~~~~~-~--~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~--~~~~~l~~h~~---------~V 424 (474)
.|.+|+++++..... + ...-++.+++...+....+. |+-+|.+.|..+..+ +.-..|+.|.. .|
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al--GsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL--GSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe--eeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence 999999987654322 2 24567999999998888877 889999999998876 55566777752 57
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 011971 425 LYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQN 458 (474)
Q Consensus 425 ~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~ 458 (474)
++++|+|.-..|+|++.||++.|||-+...+...
T Consensus 255 Nsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 255 NSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred cceEeecccceEEEecCCceEEEecchhhhhhhc
Confidence 8899999988999999999999999887666554
No 87
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.8e-24 Score=191.96 Aligned_cols=273 Identities=20% Similarity=0.314 Sum_probs=228.8
Q ss_pred ceeeeeCCC-CcEEEE-EcCCeEEEEeCCCCCEEEEEec-CCCCCEEEEEEcC-CCCEEEEEeCCCcEEEecCCCCeEEE
Q 011971 169 YLNLVDWSS-HNVLAV-GLGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCKRVR 244 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~-~~d~~V~lwd~~~~~~~~~~~~-~~~~~V~~v~~sp-~g~~la~gs~dg~I~iwd~~~~~~~~ 244 (474)
.+..++|+. +.-|+. +.|+++.+|++...+....... +|.+.|-.++|.| ..+.|++++.|.+|++||+..+++..
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~ 101 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTA 101 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEE
Confidence 378899997 555555 4689999999987755443333 7888999999998 45789999999999999999999999
Q ss_pred EecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011971 245 TMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (474)
Q Consensus 245 ~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~ 322 (474)
.+....+.+. +.|+ +.+++.++.|..|...|.++.+ +..-....-++.-+.|+-++.+++....-|+|.|.....
T Consensus 102 ~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~--~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps 178 (313)
T KOG1407|consen 102 RIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYK--IVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS 178 (313)
T ss_pred EeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccc--eeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccc
Confidence 8886666655 4555 5899999999999999999876 222334556788899998888877777779999999999
Q ss_pred CcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCC
Q 011971 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQN 401 (474)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg 401 (474)
.+++..++.|.....||.|+|+|+ .+|+|+ .|..+.+||+...-+++.+. ..-+|..+.|+.+|++|++ +++|.
T Consensus 179 Lkpv~si~AH~snCicI~f~p~Gr-yfA~Gs--ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lAS--aSEDh 253 (313)
T KOG1407|consen 179 LKPVQSIKAHPSNCICIEFDPDGR-YFATGS--ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLAS--ASEDH 253 (313)
T ss_pred cccccccccCCcceEEEEECCCCc-eEeecc--ccceeeccChhHhhhheeeccccCceEEEEeccCcceeec--cCccc
Confidence 999999999999999999999998 566665 89999999999988888886 6778999999999999999 88999
Q ss_pred eEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCC---------CcEEEEeC
Q 011971 402 QIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGD---------ETLRFWNV 450 (474)
Q Consensus 402 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~D---------g~I~iW~l 450 (474)
.|-|-++++|..+.+++ +.++...++|+|...+||-++.| |++++|-+
T Consensus 254 ~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 254 FIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred eEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecC
Confidence 99999999999999886 78889999999999999877665 45666544
No 88
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4e-25 Score=200.82 Aligned_cols=267 Identities=21% Similarity=0.326 Sum_probs=227.7
Q ss_pred CcEEEEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecC------CC-----------
Q 011971 178 HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA------SR----------- 239 (474)
Q Consensus 178 ~~~la~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~------~~----------- 239 (474)
..++..+ .|.+..||.++++.+...+. +|.+.|.+|+|++.+.++++++.|++-.||.. ..
T Consensus 160 qpi~gtASADhTA~iWs~Esg~CL~~Y~-GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 160 QPICGTASADHTARIWSLESGACLATYT-GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred CcceeecccccceeEEeeccccceeeec-ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 4555444 58899999999999988775 99999999999999999999999999999962 00
Q ss_pred -------------------C----eEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCE
Q 011971 240 -------------------C----KRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEV 294 (474)
Q Consensus 240 -------------------~----~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 294 (474)
+ ..+..+.+|.+.|.+..|- ++.+++++.|.+..+||++++. ++..+.+|..+.
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge-~v~~LtGHd~EL 317 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE-VVNILTGHDSEL 317 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc-eeccccCcchhc
Confidence 0 1345677999999999996 6899999999999999999988 789999999999
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCC-cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ceee
Q 011971 295 CGLKWSYDNRELASGGNDNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLS 372 (474)
Q Consensus 295 ~~l~~spd~~~lasg~~Dg~v~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~-~~~~ 372 (474)
+.++-+|..+++++.+.|.+.++||++.. ..+..|.+|...|+++.|..+.+ +++|+ .|.+|++||+++. ..+.
T Consensus 318 tHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSgS--DDrTvKvWdLrNMRsplA 393 (481)
T KOG0300|consen 318 THCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSGS--DDRTVKVWDLRNMRSPLA 393 (481)
T ss_pred cccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc--eeecC--CCceEEEeeeccccCcce
Confidence 99999999999999999999999999854 45678899999999999998854 55654 8999999999885 4688
Q ss_pred eecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEE-----cCCCccEEEEEECCCC--CEEEEEeCCCcE
Q 011971 373 CMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATL-----TGHTFRVLYLAISPDG--QTIVTGAGDETL 445 (474)
Q Consensus 373 ~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l-----~~h~~~V~~l~~spdg--~~l~t~s~Dg~I 445 (474)
++.+.+.+..++.+..+..++. -..+.+|++||+.. ..+..+ ++|..-|.+++|..+. .-|++++-|..+
T Consensus 394 TIRtdS~~NRvavs~g~~iIAi--PhDNRqvRlfDlnG-~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v 470 (481)
T KOG0300|consen 394 TIRTDSPANRVAVSKGHPIIAI--PHDNRQVRLFDLNG-NRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMV 470 (481)
T ss_pred eeecCCccceeEeecCCceEEe--ccCCceEEEEecCC-CccccCCcccccccceeeeeeeccccCccccccccccccee
Confidence 8999999999999999999988 55888999999954 333333 4899999999998653 358899999999
Q ss_pred EEEeCCCC
Q 011971 446 RFWNVFPS 453 (474)
Q Consensus 446 ~iW~l~~~ 453 (474)
.-|++...
T Consensus 471 ~gW~in~p 478 (481)
T KOG0300|consen 471 AGWKINTP 478 (481)
T ss_pred eeeEeccc
Confidence 99998754
No 89
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.9e-26 Score=228.62 Aligned_cols=281 Identities=20% Similarity=0.320 Sum_probs=223.8
Q ss_pred eeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEec--CC----CCCEEEEEEcC-CCCEEEEEeCCCcEEEecCCC--
Q 011971 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDL--GI----DDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASR-- 239 (474)
Q Consensus 170 v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~--~~----~~~V~~v~~sp-~g~~la~gs~dg~I~iwd~~~-- 239 (474)
.+.++-++ -+-|+++....+.||.+.......-+.+ +. .-.+..|.|.. +.++||+++..|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~ 121 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI 121 (839)
T ss_pred cceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccc
Confidence 45555555 3455555566667776654432222211 11 12455678875 467999999999999999987
Q ss_pred -CeEEEEecCCCCcEEEEEec---CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec-CCCEEEEEeCCCc
Q 011971 240 -CKRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNR 314 (474)
Q Consensus 240 -~~~~~~~~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~lasg~~Dg~ 314 (474)
.+.+..+..|...+.++.|+ +++|++|+.||.|++||++.... ..++.+....|..++|+| .+..|+++...|.
T Consensus 122 rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S-~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~ 200 (839)
T KOG0269|consen 122 RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS-KSTFRSNSESIRDVKFSPGYGNKFASIHDSGY 200 (839)
T ss_pred cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc-cccccccchhhhceeeccCCCceEEEecCCce
Confidence 66777889999999999998 69999999999999999998773 666777888999999999 6789999999999
Q ss_pred EEEEECCCC-cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc--eeeeecCCCCeEEEEEcCCCCe
Q 011971 315 LFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT--HLSCMDTGSQVCNLVWSKNVNE 391 (474)
Q Consensus 315 v~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~--~~~~~~~~~~v~~l~~s~~~~~ 391 (474)
|++||++.. ++...+..|.++|.|+.|+|++ .+||+|| .|+.|+|||+.+++ .+.++.+..+|.++.|-|...+
T Consensus 201 lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr-~~lATGG--RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 201 LQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNR-EWLATGG--RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred EEEeeccCchhHHHHhhcccCceEEEeecCCC-ceeeecC--CCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence 999999865 5677888999999999999964 5889987 99999999998654 5677889999999999998776
Q ss_pred EE-EEEecCCCeEEEEECCC-CceeEEEcCCCccEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCC
Q 011971 392 LV-STHGYSQNQIIVWRYPT-MSKLATLTGHTFRVLYLAISP-DGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 392 l~-~~~g~~dg~I~iwd~~~-~~~~~~l~~h~~~V~~l~~sp-dg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
.+ +++-..|-.|+|||++. .-+..++..|+..++.++|-. |-..|.+++.||+|..-.+....
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 54 43344688999999975 456778889999999999965 55688899999998877766554
No 90
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=3.4e-25 Score=230.01 Aligned_cols=246 Identities=25% Similarity=0.399 Sum_probs=209.8
Q ss_pred CCCEEEEEEcCCCCEEEEEe--CCCcEEEecCCC------------CeEEEEecCCCCcEEEEEec--CCEEEEEeCCCc
Q 011971 208 DDSVCSVGWANRNTHLAVGT--SHGKVQIWDASR------------CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKS 271 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs--~dg~I~iwd~~~------------~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~ 271 (474)
...|.+|..+|+|..+|+|+ .||.+.||+.+. .+.+.++..|.+.|.|+.|+ +.+|++|++|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 56799999999999999999 899999998642 35667788999999999998 589999999999
Q ss_pred EEEEECcC------Cc-----------ceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCC
Q 011971 272 ILQRDIRA------QE-----------DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTA 334 (474)
Q Consensus 272 I~iwd~~~------~~-----------~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~ 334 (474)
|.||+... .. ..+..+.+|...|..++|+|++.+|++++.|++|.||+.++.+.+.++.+|.+
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s 172 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS 172 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccc
Confidence 99999772 10 24677889999999999999999999999999999999999999999999999
Q ss_pred cEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-------CCCeEEEEEcCCCCeEEEEEecCCC--eEEE
Q 011971 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-------GSQVCNLVWSKNVNELVSTHGYSQN--QIIV 405 (474)
Q Consensus 335 ~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~-------~~~v~~l~~s~~~~~l~~~~g~~dg--~I~i 405 (474)
.|+.+.|.|-|+++. +-+ .|++|++|++.+....+.+.. ...+..+.|||||.+|++.++...+ .+.|
T Consensus 173 ~VKGvs~DP~Gky~A-Sqs--dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 173 LVKGVSWDPIGKYFA-SQS--DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred cccceEECCccCeee-eec--CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 999999999998554 443 799999999888766666542 3458899999999999998765443 7888
Q ss_pred EECCCCceeEEEcCCCccEEEEEECCC-----CC------------EEEEEeCCCcEEEEeCCCCCCC
Q 011971 406 WRYPTMSKLATLTGHTFRVLYLAISPD-----GQ------------TIVTGAGDETLRFWNVFPSPKS 456 (474)
Q Consensus 406 wd~~~~~~~~~l~~h~~~V~~l~~spd-----g~------------~l~t~s~Dg~I~iW~l~~~~~~ 456 (474)
.+-.+++.-..|.||.+++..++|+|. .. .+|+|+.|++|-||........
T Consensus 250 ieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 250 IERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred EecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 888888888999999999999999981 11 6788999999999998655443
No 91
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.9e-26 Score=216.11 Aligned_cols=244 Identities=20% Similarity=0.340 Sum_probs=213.2
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe--EEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCc
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK--RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE 281 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~ 281 (474)
.|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+.+.|. +..+++++.|+.+++|++....
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r 252 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR 252 (459)
T ss_pred ccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh
Confidence 578999999999998899999999999999997766 777888899999999997 4789999999999999998876
Q ss_pred ceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEE
Q 011971 282 DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIR 361 (474)
Q Consensus 282 ~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~ 361 (474)
...++.+|+..|+++.|......+++|+.|.+|++||+....+..++ .....+..|+..+ ..+++|. .|++|+
T Consensus 253 -~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~-l~~S~cnDI~~~~---~~~~SgH--~DkkvR 325 (459)
T KOG0288|consen 253 -LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV-LPGSQCNDIVCSI---SDVISGH--FDKKVR 325 (459)
T ss_pred -hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccc-cccccccceEecc---eeeeecc--cccceE
Confidence 68889999999999999887777999999999999999987776665 3345566666653 3666665 899999
Q ss_pred EEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCC----CccEEEEEECCCCCEEE
Q 011971 362 FWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH----TFRVLYLAISPDGQTIV 437 (474)
Q Consensus 362 iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h----~~~V~~l~~spdg~~l~ 437 (474)
+||.++..+...+..++.|+++..++++..+++ .+.|..+.+.|+++.+....+... ....+.+.|||++.|++
T Consensus 326 fwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLs--ssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGGRVTSLDLSMDGLELLS--SSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA 403 (459)
T ss_pred EEeccCCceeeEeecCcceeeEeeccCCeEEee--ecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee
Confidence 999999999999999999999999999999999 579999999999999888777632 23378899999999999
Q ss_pred EEeCCCcEEEEeCCCCCCCCC
Q 011971 438 TGAGDETLRFWNVFPSPKSQN 458 (474)
Q Consensus 438 t~s~Dg~I~iW~l~~~~~~~~ 458 (474)
+|+.||.|+||+++++.....
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~ 424 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKV 424 (459)
T ss_pred eccCCCcEEEEEccCceEEEE
Confidence 999999999999999876544
No 92
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2e-26 Score=212.73 Aligned_cols=241 Identities=21% Similarity=0.374 Sum_probs=216.9
Q ss_pred CCCCCEEEEEEcCCC-CEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceE
Q 011971 206 GIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFV 284 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g-~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 284 (474)
+|.+.|.|++=+|.. ..+|+|+.||.|+|||+....+..++..|.+.|..|++....+++++.|.+|+.|.+... +.
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~--p~ 141 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGP--PL 141 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCC--cc
Confidence 899999999999977 789999999999999999999999999999999999999999999999999999998764 35
Q ss_pred eeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011971 285 SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (474)
Q Consensus 285 ~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd 364 (474)
.++.+ ...+.+|.-+..+..++++|. .|.|||.....++..+.-....|.++.|+|-...+|++++ .|+.|.+||
T Consensus 142 ~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~--sDrsIvLyD 216 (433)
T KOG0268|consen 142 HTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA--SDRSIVLYD 216 (433)
T ss_pred eeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec--cCCceEEEe
Confidence 55543 456788887777889999987 5999999999999999888889999999999999999987 899999999
Q ss_pred CCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC-ceeEEEcCCCccEEEEEECCCCCEEEEEeCCC
Q 011971 365 TTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM-SKLATLTGHTFRVLYLAISPDGQTIVTGAGDE 443 (474)
Q Consensus 365 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg 443 (474)
++.+.++..+........++|+|.+-.+++ +.+|..++.||++.. .++....+|.+.|.++.|||.|+-+++|+.|.
T Consensus 217 ~R~~~Pl~KVi~~mRTN~IswnPeafnF~~--a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 217 LRQASPLKKVILTMRTNTICWNPEAFNFVA--ANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred cccCCccceeeeeccccceecCccccceee--ccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc
Confidence 999999999999999999999996666666 889999999999876 45777889999999999999999999999999
Q ss_pred cEEEEeCCCCCC
Q 011971 444 TLRFWNVFPSPK 455 (474)
Q Consensus 444 ~I~iW~l~~~~~ 455 (474)
+|+||.+..+..
T Consensus 295 sIRIf~~~~~~S 306 (433)
T KOG0268|consen 295 SIRIFPVNHGHS 306 (433)
T ss_pred eEEEeecCCCcc
Confidence 999999987653
No 93
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.1e-25 Score=219.64 Aligned_cols=238 Identities=25% Similarity=0.423 Sum_probs=208.7
Q ss_pred CcceeeeeCCC-CcEEEEEc-CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEE
Q 011971 167 DFYLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (474)
Q Consensus 167 d~~v~~l~~s~-~~~la~~~-d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~ 244 (474)
..+++++.|++ +.+|++|. +|.|.|||..+.+.+..+...|...|-+++|. +..+.+|+.+|.|..+|+...+...
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 56799999998 78888885 78999999999888887765589999999998 6789999999999999998776554
Q ss_pred E-ecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec-CCCEEEEEe--CCCcEEEE
Q 011971 245 T-MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGG--NDNRLFVW 318 (474)
Q Consensus 245 ~-~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~lasg~--~Dg~v~iw 318 (474)
. +.+|...|..+.|+ +.+|++|+.|+.+.|||..... +...+..|...|..++|+| ....||+|+ .|++|++|
T Consensus 295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 4 88999999999998 5899999999999999996655 6788899999999999999 567888875 59999999
Q ss_pred ECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEe
Q 011971 319 NQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHG 397 (474)
Q Consensus 319 d~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g 397 (474)
|..+++.+..+ .....|..|.|++..+.++++. |..+..|.||+..+.+.+..+. |...|..++++|+|..+++ |
T Consensus 374 n~~~g~~i~~v-dtgsQVcsL~Wsk~~kEi~sth-G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t--~ 449 (484)
T KOG0305|consen 374 NTNTGARIDSV-DTGSQVCSLIWSKKYKELLSTH-GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT--G 449 (484)
T ss_pred EcCCCcEeccc-ccCCceeeEEEcCCCCEEEEec-CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE--e
Confidence 99999988877 5578899999999988777776 5678899999999988777765 6778999999999999999 8
Q ss_pred cCCCeEEEEECCCC
Q 011971 398 YSQNQIIVWRYPTM 411 (474)
Q Consensus 398 ~~dg~I~iwd~~~~ 411 (474)
..|.++++|++-..
T Consensus 450 a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 450 AADETLRFWNLFDE 463 (484)
T ss_pred cccCcEEeccccCC
Confidence 89999999998654
No 94
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=8.2e-25 Score=216.86 Aligned_cols=272 Identities=20% Similarity=0.319 Sum_probs=225.4
Q ss_pred eeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEec-CCCCCEEE-EEEcC-CCCEEEEEeCCCcEEEecCCCCeEEEE
Q 011971 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDL-GIDDSVCS-VGWAN-RNTHLAVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 170 v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~-~~~~~V~~-v~~sp-~g~~la~gs~dg~I~iwd~~~~~~~~~ 245 (474)
+..++..+ ..+++++.|+++++|+-..++......+ +|.+-|.+ +++-+ ++-.|++|+.|+.|.+|.......+.+
T Consensus 17 Vr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~ 96 (745)
T KOG0301|consen 17 VRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYT 96 (745)
T ss_pred hheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhh
Confidence 45555555 4477777799999999988887764433 56676666 88875 445699999999999999999999999
Q ss_pred ecCCCCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011971 246 MEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (474)
Q Consensus 246 ~~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~ 324 (474)
+.+|...|.+++.. ...+++||.|.++++|-+.. +...+.+|+..|++++.-|++ .+++|+.|.+|++|.- ++
T Consensus 97 LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~ 170 (745)
T KOG0301|consen 97 LKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GT 170 (745)
T ss_pred hhccccceeeeecCCcCceEecccccceEEecchh---hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cc
Confidence 99999999999965 45689999999999998753 456689999999999999987 8999999999999985 77
Q ss_pred ceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEE
Q 011971 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQII 404 (474)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 404 (474)
.+.+|.+|...|..+++-+++. ++.++ .||.|++|++.....+....|.+-+.++....++..+++ .++|++++
T Consensus 171 ~l~tf~gHtD~VRgL~vl~~~~-flScs---NDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs--~gEDrtlr 244 (745)
T KOG0301|consen 171 LLKTFSGHTDCVRGLAVLDDSH-FLSCS---NDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVS--TGEDRTLR 244 (745)
T ss_pred hhhhhccchhheeeeEEecCCC-eEeec---CCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEE--ecCCceEE
Confidence 8899999999999999999865 55554 799999999944444444557788999998888888888 56999999
Q ss_pred EEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 011971 405 VWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKS 456 (474)
Q Consensus 405 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~ 456 (474)
||+.. ++.+.+.-....|+++.+-++|. |++|+.||.||||........
T Consensus 245 iW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~A 293 (745)
T KOG0301|consen 245 IWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRKA 293 (745)
T ss_pred EeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecccccC
Confidence 99976 67777776666899999988886 778999999999998865443
No 95
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.4e-24 Score=206.73 Aligned_cols=266 Identities=18% Similarity=0.284 Sum_probs=215.8
Q ss_pred CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEE
Q 011971 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-HGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLL 263 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~-dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l 263 (474)
..+.+||+.+|...-.+.-+....-.++..- .+.|++++.. ...|.+|.+..........--.+.|.+++-+ +.+|
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l 96 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFL 96 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEE
Confidence 4689999999987666642211111112111 2356666654 4579999988766555444467789999886 4677
Q ss_pred EEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECC---------CCcceEEEccCCC
Q 011971 264 SSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH---------STQPVLKYCEHTA 334 (474)
Q Consensus 264 ~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~---------~~~~~~~~~~h~~ 334 (474)
+.|+..|.|++|.+.++. .+..+.+|-+.|++|.|+.||.+|++|++||.|.+|++. +-++.+.|..|.-
T Consensus 97 ~ag~i~g~lYlWelssG~-LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htl 175 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSSGI-LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTL 175 (476)
T ss_pred EeecccCcEEEEEecccc-HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcc
Confidence 777799999999999988 677789999999999999999999999999999999863 3467889999999
Q ss_pred cEEEEEECCCC-CcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC---
Q 011971 335 AVKAIAWSPHL-HGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT--- 410 (474)
Q Consensus 335 ~V~~l~~sp~~-~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~--- 410 (474)
+|+.+...+.| ...+++.+ .|.++++||+..+..+..+.....+.+++.+|-+..+++ |..+|.|.+.++..
T Consensus 176 sITDl~ig~Gg~~~rl~TaS--~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yi--Gt~~G~I~~~~~~~~~~ 251 (476)
T KOG0646|consen 176 SITDLQIGSGGTNARLYTAS--EDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYI--GTEEGKIFQNLLFKLSG 251 (476)
T ss_pred eeEEEEecCCCccceEEEec--CCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEe--cCCcceEEeeehhcCCc
Confidence 99999998763 33555555 899999999999999999999999999999999999999 99999999988743
Q ss_pred -------------CceeEEEcCCCc--cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 011971 411 -------------MSKLATLTGHTF--RVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQN 458 (474)
Q Consensus 411 -------------~~~~~~l~~h~~--~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~ 458 (474)
+..+..+.||.+ .|+|++++-||.+|++|+.||.+++||+......+.
T Consensus 252 ~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 252 QSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred ccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence 234566789988 999999999999999999999999999988765543
No 96
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=8.8e-26 Score=208.50 Aligned_cols=273 Identities=18% Similarity=0.242 Sum_probs=215.1
Q ss_pred eeeeeCCCC---cEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEe
Q 011971 170 LNLVDWSSH---NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (474)
Q Consensus 170 v~~l~~s~~---~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~ 246 (474)
|.|++-+|+ .+++++.||.|+|||+.+......+. .|.+.|..|++.. ..+++++.|.+|+.|.++. ..++++
T Consensus 69 V~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~-AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~ti 144 (433)
T KOG0268|consen 69 VSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFK-AHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTI 144 (433)
T ss_pred cchhhcCcchhhhhhccccCceEEEEehhhhhhhheee-cccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceee
Confidence 777887774 45666789999999999988888876 7999999999987 5677888899999999875 355555
Q ss_pred cCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCC
Q 011971 247 EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHST 323 (474)
Q Consensus 247 ~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-~~~lasg~~Dg~v~iwd~~~~ 323 (474)
.+ ...+..+.-+ .+.+++++. .|.|||..... ++..+.-....|.++.|+|- ...|++|+.|+.|.+||++++
T Consensus 145 lg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~-Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~ 220 (433)
T KOG0268|consen 145 LG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDN-PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA 220 (433)
T ss_pred ec-cccccccccccccccccccCc--eeeecccccCC-ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccC
Confidence 43 2344555544 567777776 48999997665 57777777788999999995 457788889999999999999
Q ss_pred cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-eee-ecCCCCeEEEEEcCCCCeEEEEEecCCC
Q 011971 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH-LSC-MDTGSQVCNLVWSKNVNELVSTHGYSQN 401 (474)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~-~~~-~~~~~~v~~l~~s~~~~~l~~~~g~~dg 401 (474)
.++..+. -...-+.|+|+|. ...++++. +|.+++.||++.... +.. .++.+.|..+.|||.|+++++ |+-|.
T Consensus 221 ~Pl~KVi-~~mRTN~IswnPe-afnF~~a~--ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvs--gsyDk 294 (433)
T KOG0268|consen 221 SPLKKVI-LTMRTNTICWNPE-AFNFVAAN--EDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVS--GSYDK 294 (433)
T ss_pred Cccceee-eeccccceecCcc-ccceeecc--ccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcc--ccccc
Confidence 9987763 3445678999994 45666655 999999999987543 333 347788999999999999999 88999
Q ss_pred eEEEEECCCCceeEEEc-CCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 011971 402 QIIVWRYPTMSKLATLT-GHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKS 456 (474)
Q Consensus 402 ~I~iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~ 456 (474)
.|+||.+..+..-..+. .--..|.++.||-|.++|++|+.|+.|++|......+.
T Consensus 295 sIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 295 SIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred eEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 99999998765443331 11246999999999999999999999999998765543
No 97
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=4.3e-24 Score=215.58 Aligned_cols=289 Identities=20% Similarity=0.284 Sum_probs=239.0
Q ss_pred CCCCcceeeeeCCC---CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC
Q 011971 164 LQDDFYLNLVDWSS---HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC 240 (474)
Q Consensus 164 ~~~d~~v~~l~~s~---~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~ 240 (474)
..+++ ++.+.--+ ++++.++.+|.+.|||+.+++++..+. ++...|+++.=+|-=+.+|+|..+|+|.|+++..+
T Consensus 157 ~~~~~-Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~-~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d 234 (910)
T KOG1539|consen 157 VEGDF-ITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQ-EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD 234 (910)
T ss_pred ccCCc-eeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEec-ccccceeEeccCCcceEEEEeccCceEEEEEcccC
Confidence 34455 55554433 567888889999999999999988886 67799999999998899999999999999999999
Q ss_pred eEEEEecCCCCcEEEEEec--C-CEEEEEeCCCcEEEEECcCCcceEeeecCc---------------------------
Q 011971 241 KRVRTMEGHRLRVGALAWS--S-SLLSSGSRDKSILQRDIRAQEDFVSKLSGH--------------------------- 290 (474)
Q Consensus 241 ~~~~~~~~h~~~V~~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h--------------------------- 290 (474)
+.+.+++...++|+.++|. + ..+++|+..|.+.+||++...........|
T Consensus 235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~ 314 (910)
T KOG1539|consen 235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKV 314 (910)
T ss_pred cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeE
Confidence 9999998556999999997 3 678888888999999986432100000011
Q ss_pred --------------------------------------------------------------------------------
Q 011971 291 -------------------------------------------------------------------------------- 290 (474)
Q Consensus 291 -------------------------------------------------------------------------------- 290 (474)
T Consensus 315 ~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k 394 (910)
T KOG1539|consen 315 WVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLK 394 (910)
T ss_pred EEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhc
Confidence
Q ss_pred -----------------------------------------------C------CCEEEEEEecCCCEEEEEeCCCcEEE
Q 011971 291 -----------------------------------------------K------SEVCGLKWSYDNRELASGGNDNRLFV 317 (474)
Q Consensus 291 -----------------------------------------------~------~~V~~l~~spd~~~lasg~~Dg~v~i 317 (474)
. ..+++++.++-|++.+.|...|.|-+
T Consensus 395 ~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~ 474 (910)
T KOG1539|consen 395 LPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDR 474 (910)
T ss_pred CCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEE
Confidence 1 34556666677777777777777777
Q ss_pred EECCCCcceEEE---ccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEE
Q 011971 318 WNQHSTQPVLKY---CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS 394 (474)
Q Consensus 318 wd~~~~~~~~~~---~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 394 (474)
|++++|-....+ ..|..+|+.++...-+. ++++++ .+|.+++||..+...+..+..+..+.++..+.....+++
T Consensus 475 fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~--~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~ 551 (910)
T KOG1539|consen 475 FNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAG--ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAI 551 (910)
T ss_pred EEcccCeeecccccCccccCceeEEEecCCCc-eEEEcc--CcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhh
Confidence 777777666666 47999999999998766 455554 799999999999999999999999999999999988888
Q ss_pred EEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 011971 395 THGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNT 459 (474)
Q Consensus 395 ~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~ 459 (474)
+..|-.|+++|..+.+.+.++.||..+|++++|||||++|++++.|++||+||+.++....-.
T Consensus 552 --~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 552 --ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred --hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence 678999999999999999999999999999999999999999999999999999988765443
No 98
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.8e-24 Score=195.15 Aligned_cols=243 Identities=18% Similarity=0.269 Sum_probs=201.6
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC-CEEEEEeCCCcEEEEECcCCcceE
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDFV 284 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~ 284 (474)
...+.|++|.|+|.+..|++++.||.+++||+........++ |..++.+++|.+ ..+++|+-||.|+.+|+.++. .
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~--~ 87 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGN--E 87 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCceEEEeccCceEEEEEecCCc--c
Confidence 457899999999999999999999999999999875554444 999999999985 789999999999999999887 4
Q ss_pred eeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011971 285 SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (474)
Q Consensus 285 ~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd 364 (474)
..+..|...|.+|..++....+++|+.|++|++||.+.......+. ....|.++....+ .|++ |+ .|..+.+||
T Consensus 88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~g~--~LvV-g~--~~r~v~iyD 161 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVSGN--RLVV-GT--SDRKVLIYD 161 (323)
T ss_pred eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEeccCC--EEEE-ee--cCceEEEEE
Confidence 5678899999999999988999999999999999999866665553 3447888877744 4555 33 799999999
Q ss_pred CCCCceeeee---cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC----ceeEEEcCCC---------ccEEEEE
Q 011971 365 TTTNTHLSCM---DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM----SKLATLTGHT---------FRVLYLA 428 (474)
Q Consensus 365 ~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~----~~~~~l~~h~---------~~V~~l~ 428 (474)
+++....... ...-++.++++.|++.-.++ ++-+|.|.+=.+... ..-..|+.|. .+|++|+
T Consensus 162 LRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~--sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~ 239 (323)
T KOG1036|consen 162 LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVV--SSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA 239 (323)
T ss_pred cccccchhhhccccceeEEEEEEEecCCCceEE--EeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE
Confidence 9987655432 34567999999998888888 779999998766554 4455666664 3799999
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 011971 429 ISPDGQTIVTGAGDETLRFWNVFPSPKSQNT 459 (474)
Q Consensus 429 ~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~ 459 (474)
|+|--++|+||+.||.|.+||+++.++....
T Consensus 240 Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~ 270 (323)
T KOG1036|consen 240 FHPIHGTFATGGSDGIVNIWDLFNRKRLKQL 270 (323)
T ss_pred eccccceEEecCCCceEEEccCcchhhhhhc
Confidence 9999889999999999999999998876554
No 99
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=3.7e-24 Score=193.67 Aligned_cols=273 Identities=17% Similarity=0.255 Sum_probs=211.1
Q ss_pred cccccCCCCCCCcceeeeeCCC--CcEE-EEEcCCeEEEEeCCC-CCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc
Q 011971 156 YKILDAPALQDDFYLNLVDWSS--HNVL-AVGLGNCVYLWNACS-SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGK 231 (474)
Q Consensus 156 ~~~l~ap~~~~d~~v~~l~~s~--~~~l-a~~~d~~V~lwd~~~-~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~ 231 (474)
.+..+.+.-.+| .+..|+||| .+++ |++.|++|++|+++. |.........|.++|.+++|+.||..+++|+.|+.
T Consensus 17 ~kd~ev~~pP~D-sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 17 NKDYEVPNPPED-SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ 95 (347)
T ss_pred ccceecCCCccc-chheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCc
Confidence 333444444444 388999998 5677 445699999999986 45544433478999999999999999999999999
Q ss_pred EEEecCCCCeEEEEecCCCCcEEEEEecC----CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEE
Q 011971 232 VQIWDASRCKRVRTMEGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELA 307 (474)
Q Consensus 232 I~iwd~~~~~~~~~~~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~la 307 (474)
+++||+.++ .+..+..|.++|.++.|-+ ..|++|+.|.+|+.||.+... ++.++. -.+.++++..- ..+++
T Consensus 96 ~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-pv~t~~-LPeRvYa~Dv~--~pm~v 170 (347)
T KOG0647|consen 96 AKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-PVATLQ-LPERVYAADVL--YPMAV 170 (347)
T ss_pred eEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC-eeeeee-ccceeeehhcc--CceeE
Confidence 999999999 5666778999999999963 478999999999999999876 344443 34567766553 44788
Q ss_pred EEeCCCcEEEEECCCCcceEEEc--cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee--eeec---C---C
Q 011971 308 SGGNDNRLFVWNQHSTQPVLKYC--EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL--SCMD---T---G 377 (474)
Q Consensus 308 sg~~Dg~v~iwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~--~~~~---~---~ 377 (474)
++..+..|.+|+++++....... .-.-.+.||+..++.... +.|+ .+|.+.+..+..+... ..++ . .
T Consensus 171 Vata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~-alGs--iEGrv~iq~id~~~~~~nFtFkCHR~~~~~ 247 (347)
T KOG0647|consen 171 VATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGF-ALGS--IEGRVAIQYIDDPNPKDNFTFKCHRSTNSV 247 (347)
T ss_pred EEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCce-Eeee--ecceEEEEecCCCCccCceeEEEeccCCCC
Confidence 89999999999998764322211 123467899999987755 5554 8999999988875322 2222 1 1
Q ss_pred ----CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEE
Q 011971 378 ----SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTG 439 (474)
Q Consensus 378 ----~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~ 439 (474)
-.|.+++|+|....|++ .++||.+.+||-....++.+.+.|..+|++.+|+.+|.+++-+
T Consensus 248 ~~~VYaVNsi~FhP~hgtlvT--aGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 248 NDDVYAVNSIAFHPVHGTLVT--AGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred CCceEEecceEeecccceEEE--ecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 23788999999999999 5589999999999999999999999999999999999988755
No 100
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.2e-25 Score=216.79 Aligned_cols=271 Identities=21% Similarity=0.324 Sum_probs=229.6
Q ss_pred Cc-EEEEEcCCeEEEEeCCCCCE------EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC--eEEEEecC
Q 011971 178 HN-VLAVGLGNCVYLWNACSSKV------TKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC--KRVRTMEG 248 (474)
Q Consensus 178 ~~-~la~~~d~~V~lwd~~~~~~------~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~--~~~~~~~~ 248 (474)
++ ++++|.||.|++|+.....- ...++ .|.+.|..+....+|+.|++++.|-+|++|+...+ -++.++..
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~ 115 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRT 115 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhc
Confidence 44 78888899999999864332 12222 58899999999999999999999999999999877 57788899
Q ss_pred CCCcEEEEEe---cCCEEEEEeCCCcEEEEECcCCcc---------eEeeec-CcCCCEEEEEEecCCCEEEEEeCCCcE
Q 011971 249 HRLRVGALAW---SSSLLSSGSRDKSILQRDIRAQED---------FVSKLS-GHKSEVCGLKWSYDNRELASGGNDNRL 315 (474)
Q Consensus 249 h~~~V~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~---------~~~~~~-~h~~~V~~l~~spd~~~lasg~~Dg~v 315 (474)
|..-|.|++. +..++++|+-|+.|++||+.++.. ....+. ++...|++++.++.|..|++|+..+.|
T Consensus 116 H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~l 195 (735)
T KOG0308|consen 116 HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDL 195 (735)
T ss_pred ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccce
Confidence 9999999999 357999999999999999997632 122333 889999999999999999999999999
Q ss_pred EEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEE
Q 011971 316 FVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVS 394 (474)
Q Consensus 316 ~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~ 394 (474)
++||.++.+.+..+.+|...|+++..++||..++.++ .||+|++||+...+++.++. |...|+++..+++-..+++
T Consensus 196 r~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s---SDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYs 272 (735)
T KOG0308|consen 196 RLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS---SDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYS 272 (735)
T ss_pred EEeccccccceeeeeccccceEEEEEcCCCCeEeecC---CCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEe
Confidence 9999999999999999999999999999999777755 69999999999999998876 5566999999999999999
Q ss_pred EEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 395 THGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 395 ~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
|+.|+.|..-|+.+......+.....+|..+..+...+-+-+++.|+.|+-|......
T Consensus 273 --G~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~ 330 (735)
T KOG0308|consen 273 --GGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI 330 (735)
T ss_pred --cCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcccc
Confidence 9999999999999865555555566778888887655555677889999999887554
No 101
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=6.7e-23 Score=196.57 Aligned_cols=270 Identities=20% Similarity=0.303 Sum_probs=222.4
Q ss_pred ceeeeeCCC--CcEEEEEcCCeEEEEeCCCCCEEEEEec---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEE
Q 011971 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDL---GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV 243 (474)
Q Consensus 169 ~v~~l~~s~--~~~la~~~d~~V~lwd~~~~~~~~~~~~---~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~ 243 (474)
.|..+.|.| .+++.....+.+++|+.+++...+...+ .....|.|++|.++|+ +++|..+|.|.||+..+.+..
T Consensus 202 ~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~ 280 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRIS 280 (626)
T ss_pred eEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEE
Confidence 377889998 6788888889999999999887766543 2347899999999997 779999999999999988888
Q ss_pred EEecCCCCcEEEEEec-CCEEEEEeCCCcEEEEECcCCc---------------------------------------ce
Q 011971 244 RTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQE---------------------------------------DF 283 (474)
Q Consensus 244 ~~~~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~---------------------------------------~~ 283 (474)
+....|.+.|.+++.- ...|++|+.|+.|..||-.-.+ ..
T Consensus 281 k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f 360 (626)
T KOG2106|consen 281 KQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF 360 (626)
T ss_pred eEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc
Confidence 8877999999999986 4677779999999999832110 01
Q ss_pred EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEE
Q 011971 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (474)
Q Consensus 284 ~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iw 363 (474)
.....+|..+..+++.+|+.+++++++.|+.+++|+ ..++..+. .-..++.|+.|+|.| .++.|. ..|...+.
T Consensus 361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg--~va~Gt--~~G~w~V~ 433 (626)
T KOG2106|consen 361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG--VVAVGT--ATGRWFVL 433 (626)
T ss_pred eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCcc--eEEEee--ccceEEEE
Confidence 122346888999999999999999999999999999 44444443 346688999999998 566654 89999999
Q ss_pred ECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceeEEEc-CCCccEEEEEECCCCCEEEEEeC
Q 011971 364 NTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT-MSKLATLT-GHTFRVLYLAISPDGQTIVTGAG 441 (474)
Q Consensus 364 d~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~~~~~~l~-~h~~~V~~l~~spdg~~l~t~s~ 441 (474)
|+++...+.....+.++..+.|+|+|.+|++ |+.|+.|+||.+.. +....... .|..+|+.+.||+|+++|.+-+.
T Consensus 434 d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAv--gs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~ 511 (626)
T KOG2106|consen 434 DTETQDLVTIHTDNEQLSVVRYSPDGAFLAV--GSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSG 511 (626)
T ss_pred ecccceeEEEEecCCceEEEEEcCCCCEEEE--ecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccC
Confidence 9999777777667899999999999999999 99999999999864 33333332 23488999999999999999999
Q ss_pred CCcEEEE
Q 011971 442 DETLRFW 448 (474)
Q Consensus 442 Dg~I~iW 448 (474)
|-.|.+|
T Consensus 512 d~eiLyW 518 (626)
T KOG2106|consen 512 DYEILYW 518 (626)
T ss_pred ceEEEEE
Confidence 9999999
No 102
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=1.7e-24 Score=205.75 Aligned_cols=243 Identities=20% Similarity=0.385 Sum_probs=194.6
Q ss_pred CCCCcceeeeeCCC--CcEEEEEc-CCeEEEEeCCCCCEEEE---------EecCCCCCEEEEEEcCCC-CEEEEEeCCC
Q 011971 164 LQDDFYLNLVDWSS--HNVLAVGL-GNCVYLWNACSSKVTKL---------CDLGIDDSVCSVGWANRN-THLAVGTSHG 230 (474)
Q Consensus 164 ~~~d~~v~~l~~s~--~~~la~~~-d~~V~lwd~~~~~~~~~---------~~~~~~~~V~~v~~sp~g-~~la~gs~dg 230 (474)
+..+--||-+.+-| .+++|+.. ++.|+|||.....-... .-.+|...-++++|++.. -+|++|+.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 33444567777777 45677665 57999999764321110 112787778889999854 4789999999
Q ss_pred cEEEecCCCCe-------EEEEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcC-CcceEeeecCcCCCEEEEEE
Q 011971 231 KVQIWDASRCK-------RVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRA-QEDFVSKLSGHKSEVCGLKW 299 (474)
Q Consensus 231 ~I~iwd~~~~~-------~~~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~ 299 (474)
.|++||+.... ....+.+|...|..++|+. ++|++++.|+.+.|||+|+ .........+|.++|.|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 99999997532 3456789999999999984 7999999999999999996 33456778899999999999
Q ss_pred ec-CCCEEEEEeCCCcEEEEECCCC-cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee-----
Q 011971 300 SY-DNRELASGGNDNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS----- 372 (474)
Q Consensus 300 sp-d~~~lasg~~Dg~v~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~----- 372 (474)
+| ++..||+|+.|++|.+||+|+. ++++++.+|...|..|.|+|+...+|+++| .|+.+.+||+..-...+
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg--~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG--TDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc--cCCcEEEEeccccccccChhhh
Confidence 99 6678999999999999999985 578899999999999999999999999987 99999999987522111
Q ss_pred -------eec---CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011971 373 -------CMD---TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (474)
Q Consensus 373 -------~~~---~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 409 (474)
.+. |...|..+.|+|+...++++ ...|+.+.||+..
T Consensus 359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~S-vaeDN~LqIW~~s 404 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIAS-VAEDNILQIWQMA 404 (422)
T ss_pred ccCCcceeEEecCcccccccccCCCCCCeEEEE-ecCCceEEEeecc
Confidence 122 45679999999999998886 5689999999975
No 103
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.5e-25 Score=217.20 Aligned_cols=237 Identities=22% Similarity=0.322 Sum_probs=205.3
Q ss_pred EEEc-CCCCEEEEEeCCCcEEEecCCCCe------EEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCc-ce
Q 011971 214 VGWA-NRNTHLAVGTSHGKVQIWDASRCK------RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE-DF 283 (474)
Q Consensus 214 v~~s-p~g~~la~gs~dg~I~iwd~~~~~------~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~-~~ 283 (474)
+..+ |.+++|++|+.||.|++|++.... .+..++.|...|..++.. ++.|++++.|-+|++|+..... -+
T Consensus 30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c 109 (735)
T KOG0308|consen 30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFC 109 (735)
T ss_pred ccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchh
Confidence 3343 467789999999999999986432 467788999999998875 5799999999999999998764 46
Q ss_pred EeeecCcCCCEEEEEE-ecCCCEEEEEeCCCcEEEEECCCCc--ceEE--------Ec-cCCCcEEEEEECCCCCcEEEE
Q 011971 284 VSKLSGHKSEVCGLKW-SYDNRELASGGNDNRLFVWNQHSTQ--PVLK--------YC-EHTAAVKAIAWSPHLHGLLAS 351 (474)
Q Consensus 284 ~~~~~~h~~~V~~l~~-spd~~~lasg~~Dg~v~iwd~~~~~--~~~~--------~~-~h~~~V~~l~~sp~~~~ll~s 351 (474)
...+..|...|.||++ -++..++|+||-|+.|.+||+.++. .+.. +. ++...|++++..+.| .++++
T Consensus 110 ~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivs 188 (735)
T KOG0308|consen 110 MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVS 188 (735)
T ss_pred HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEe
Confidence 7788999999999999 7788899999999999999999772 2222 22 678899999999998 47777
Q ss_pred ecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEEC
Q 011971 352 GGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAIS 430 (474)
Q Consensus 352 g~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s 430 (474)
|| ..+.|++||.++++.+..+. |...|..+..+.||..+++ +++||.|++||+....+++++..|...|+++..+
T Consensus 189 Gg--tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls--~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~ 264 (735)
T KOG0308|consen 189 GG--TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLS--ASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSS 264 (735)
T ss_pred cC--cccceEEeccccccceeeeeccccceEEEEEcCCCCeEee--cCCCceEEeeeccccceeeeEEeccCceEEEeeC
Confidence 76 89999999999988776665 6678999999999999999 8899999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCC
Q 011971 431 PDGQTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 431 pdg~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
|+-.++++|+.||.|+.=|+.+..+
T Consensus 265 ~sf~~vYsG~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 265 PSFTHVYSGGRDGNIYRTDLRNPAK 289 (735)
T ss_pred CCcceEEecCCCCcEEecccCCchh
Confidence 9999999999999999999988543
No 104
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.6e-24 Score=216.05 Aligned_cols=241 Identities=17% Similarity=0.244 Sum_probs=209.9
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC-eEEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceE
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC-KRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFV 284 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~-~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 284 (474)
.|...-+.|+|.++|.+|++++.||.|++|+.... +...++..+...|.+++-..+.|++|+.+++|.+|.+..+.. -
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~-~ 89 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEE-D 89 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCc-c
Confidence 68888999999999999999999999999998766 445555558899999999999999999999999999988762 3
Q ss_pred eeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011971 285 SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (474)
Q Consensus 285 ~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd 364 (474)
..+....-++..++++.+|+++|.|+.|-.|++.++.+......+.+|.++|.++.|+|.+..|.++. -||.|++||
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss---~dG~v~iw~ 166 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS---CDGKVQIWD 166 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe---cCceEEEEE
Confidence 34455667899999999999999999999999999999999999999999999999999988555544 599999999
Q ss_pred CCCCceeeeecC---------CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcC--CCccEEEEEECCCC
Q 011971 365 TTTNTHLSCMDT---------GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTG--HTFRVLYLAISPDG 433 (474)
Q Consensus 365 ~~~~~~~~~~~~---------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg 433 (474)
+.++.+...+.. ...++.++|+|++..+++ -..|+.|.+|+...++....+.. |...+.+++|+|+|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~--~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV--PPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEe--eccCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence 999887766542 234677999999888888 55899999999999999888864 44559999999999
Q ss_pred CEEEEEeCCCcEEEEeCCC
Q 011971 434 QTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 434 ~~l~t~s~Dg~I~iW~l~~ 452 (474)
+|||+++.||.|.|||+++
T Consensus 245 ~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cEEeeeccCCcEEEEeccc
Confidence 9999999999999999996
No 105
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=6.5e-23 Score=186.28 Aligned_cols=260 Identities=15% Similarity=0.225 Sum_probs=208.9
Q ss_pred ceeeeeCCC--CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEe
Q 011971 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (474)
Q Consensus 169 ~v~~l~~s~--~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~ 246 (474)
++..+.|++ +.+|+++.||.+++|+.........+ .|..++.+++|.++ ..+++|+.||.|+.+|++++... .+
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~-~i 90 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED-QI 90 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce-ee
Confidence 478888886 67888889999999999988655544 68899999999974 56899999999999999987654 35
Q ss_pred cCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011971 247 EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (474)
Q Consensus 247 ~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~ 324 (474)
..|...|.|+.+. .+.+++|+.|++|++||.+... ....+.. ...|.++.. .++.|++|+.|..|.+||+++..
T Consensus 91 gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 91 GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-ccccccc-CceEEEEec--cCCEEEEeecCceEEEEEccccc
Confidence 5699999999998 5899999999999999999743 3333332 347888776 46799999999999999999876
Q ss_pred ceEEEc--cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc----eeeeec----------CCCCeEEEEEcCC
Q 011971 325 PVLKYC--EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT----HLSCMD----------TGSQVCNLVWSKN 388 (474)
Q Consensus 325 ~~~~~~--~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~----~~~~~~----------~~~~v~~l~~s~~ 388 (474)
...+.. .-.-.+.||++-|.+..++++. .||.|.+=.+...+ ....++ ..-+|.+++|+|-
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sS---ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSS---IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEe---ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 544332 2355789999999887777754 79998775555441 111221 1235899999999
Q ss_pred CCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeC
Q 011971 389 VNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAG 441 (474)
Q Consensus 389 ~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~ 441 (474)
...|++ |+.||.|.+||..+.+.+..+......|..++|+.||..||+++.
T Consensus 244 ~~tfaT--gGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 244 HGTFAT--GGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cceEEe--cCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999 999999999999999999999888888999999999999999864
No 106
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.5e-22 Score=176.12 Aligned_cols=246 Identities=20% Similarity=0.321 Sum_probs=204.6
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCC------C--------e-EEEEecCCCCcEEEEEec--CCEEE
Q 011971 202 LCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR------C--------K-RVRTMEGHRLRVGALAWS--SSLLS 264 (474)
Q Consensus 202 ~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~------~--------~-~~~~~~~h~~~V~~l~~~--~~~l~ 264 (474)
+..+.....|.+++|+|.|.+.|+|+...+++|.-... + . ..+.-+-|.+.|.|.+|+ +.+++
T Consensus 26 i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gelia 105 (350)
T KOG0641|consen 26 INILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIA 105 (350)
T ss_pred EEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEE
Confidence 33345678999999999999999999999988864321 1 1 112224688999999999 58999
Q ss_pred EEeCCCcEEEEECcCCcc----eEeeecCcCCCEEEEEEecC----CCEEEEEe-CCCcEEEEECCCCcceEEEccCCCc
Q 011971 265 SGSRDKSILQRDIRAQED----FVSKLSGHKSEVCGLKWSYD----NRELASGG-NDNRLFVWNQHSTQPVLKYCEHTAA 335 (474)
Q Consensus 265 sgs~dg~I~iwd~~~~~~----~~~~~~~h~~~V~~l~~spd----~~~lasg~-~Dg~v~iwd~~~~~~~~~~~~h~~~ 335 (474)
+|+.|.+|++.-...... .-..+..|.+.|..++|-.+ +..|++++ .|..|++-|...++..+.+.+|.+.
T Consensus 106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtgh 185 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGH 185 (350)
T ss_pred ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCccc
Confidence 999999999987665431 23456779999999999753 56777765 4778999999999999999999998
Q ss_pred EEEE-EECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC--------CCCeEEEEEcCCCCeEEEEEecCCCeEEEE
Q 011971 336 VKAI-AWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT--------GSQVCNLVWSKNVNELVSTHGYSQNQIIVW 406 (474)
Q Consensus 336 V~~l-~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~--------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 406 (474)
|.++ .|+ ..++++|+ .|.+|++||++-..++..+.. .+.|..++..|.|+.|++ |..|....+|
T Consensus 186 ilalyswn---~~m~~sgs--qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~s--g~~dssc~ly 258 (350)
T KOG0641|consen 186 ILALYSWN---GAMFASGS--QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLAS--GHADSSCMLY 258 (350)
T ss_pred EEEEEEec---CcEEEccC--CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeee--ccCCCceEEE
Confidence 8776 343 45888876 999999999999999888763 256999999999999999 8899999999
Q ss_pred ECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 407 RYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 407 d~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
|++.+..++.+..|...|.++.|||...++++++.|..|++-|+...-
T Consensus 259 dirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 259 DIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL 306 (350)
T ss_pred EeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccch
Confidence 999999999999999999999999999999999999999999997653
No 107
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=5.3e-23 Score=183.24 Aligned_cols=230 Identities=20% Similarity=0.304 Sum_probs=200.9
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcce
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF 283 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 283 (474)
+|..+++-|.++.+|.+|++++.|.++.||-..+|+.+.++.+|.+.|+|+..+ ...+++|+.|.++++||+.++++
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~- 86 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ- 86 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE-
Confidence 899999999999999999999999999999999999999999999999999876 68999999999999999999984
Q ss_pred EeeecCcCCCEEEEEEecCCCEEEEEeC-----CCcEEEEECC-------CCcceEEEccCCCcEEEEEECCCCCcEEEE
Q 011971 284 VSKLSGHKSEVCGLKWSYDNRELASGGN-----DNRLFVWNQH-------STQPVLKYCEHTAAVKAIAWSPHLHGLLAS 351 (474)
Q Consensus 284 ~~~~~~h~~~V~~l~~spd~~~lasg~~-----Dg~v~iwd~~-------~~~~~~~~~~h~~~V~~l~~sp~~~~ll~s 351 (474)
+..+. ....|..+.|+.+|++++.... .+.|.++|++ ..++...+..+...++.+-|.|-+..|++
T Consensus 87 la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~- 164 (327)
T KOG0643|consen 87 LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA- 164 (327)
T ss_pred EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE-
Confidence 44443 4678999999999998887654 4679999998 45678888889999999999999986555
Q ss_pred ecCCCCCeEEEEECCCCceeeee--cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEE
Q 011971 352 GGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAI 429 (474)
Q Consensus 352 g~Gt~d~~I~iwd~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~ 429 (474)
|. +||.|..||.++|+.+..- .|.+.|+.++++++..++++ ++.|.+-++||+.+.+.+.++. ...+|++.++
T Consensus 165 Gh--e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT--~s~Dttakl~D~~tl~v~Kty~-te~PvN~aai 239 (327)
T KOG0643|consen 165 GH--EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFIT--GSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAI 239 (327)
T ss_pred ec--CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEe--cccCccceeeeccceeeEEEee-ecccccceec
Confidence 43 8999999999998665443 36779999999999999999 8899999999999999999887 4568999999
Q ss_pred CCCCCEEEEEeCCC
Q 011971 430 SPDGQTIVTGAGDE 443 (474)
Q Consensus 430 spdg~~l~t~s~Dg 443 (474)
+|.-..++.|++..
T Consensus 240 sP~~d~VilgGGqe 253 (327)
T KOG0643|consen 240 SPLLDHVILGGGQE 253 (327)
T ss_pred ccccceEEecCCce
Confidence 99877887776543
No 108
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=1.2e-24 Score=192.00 Aligned_cols=245 Identities=19% Similarity=0.301 Sum_probs=219.2
Q ss_pred cCCCCCEEEEEEcC---CCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcC
Q 011971 205 LGIDDSVCSVGWAN---RNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRA 279 (474)
Q Consensus 205 ~~~~~~V~~v~~sp---~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~ 279 (474)
.+|..+|..++|+| +|-+|++++.||.-.+-+-+++..+.++.+|.+.|+....+. ...++++.|-+-++||.-+
T Consensus 11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~t 90 (334)
T KOG0278|consen 11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVT 90 (334)
T ss_pred cCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhh
Confidence 38999999999985 888999999999999999999999999999999999999885 4678889999999999988
Q ss_pred CcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCC
Q 011971 280 QEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR 358 (474)
Q Consensus 280 ~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~ 358 (474)
+.. +..+ .|+.-|..++|+.|.++|++|+.+..++|||++.. .+...+.+|.+.|+.+.|+...+.+|.+. .|+
T Consensus 91 gde-lhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa---dd~ 165 (334)
T KOG0278|consen 91 GDE-LHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA---DDK 165 (334)
T ss_pred hhh-hhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec---cCC
Confidence 874 3333 58888999999999999999999999999999865 45678889999999999999888788764 799
Q ss_pred eEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEE
Q 011971 359 CIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVT 438 (474)
Q Consensus 359 ~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t 438 (474)
+||+||.+++..++.+...+.|.++..+++|++|.++. .+.|.+||..+...+..+.. ...|.+..++|+...+++
T Consensus 166 tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~---gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVa 241 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY---GSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVA 241 (334)
T ss_pred ceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec---CceeEEeccccccceeeccC-ccccccccccCCCceEEe
Confidence 99999999999999999999999999999999999864 47899999999999988764 345899999999999999
Q ss_pred EeCCCcEEEEeCCCCCCCCC
Q 011971 439 GAGDETLRFWNVFPSPKSQN 458 (474)
Q Consensus 439 ~s~Dg~I~iW~l~~~~~~~~ 458 (474)
|++|..++.||..++.....
T Consensus 242 Gged~~~~kfDy~TgeEi~~ 261 (334)
T KOG0278|consen 242 GGEDFKVYKFDYNTGEEIGS 261 (334)
T ss_pred cCcceEEEEEeccCCceeee
Confidence 99999999999999886654
No 109
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.6e-23 Score=184.44 Aligned_cols=233 Identities=22% Similarity=0.389 Sum_probs=188.3
Q ss_pred eeCCCCcEEEEEcCCeEEEEeCCCCCE-EEEEec-CCCCCEEEEEEcC--CCCEEEEEeCCCcEEEecCCCCeE--EEEe
Q 011971 173 VDWSSHNVLAVGLGNCVYLWNACSSKV-TKLCDL-GIDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDASRCKR--VRTM 246 (474)
Q Consensus 173 l~~s~~~~la~~~d~~V~lwd~~~~~~-~~~~~~-~~~~~V~~v~~sp--~g~~la~gs~dg~I~iwd~~~~~~--~~~~ 246 (474)
+++....+.++++|+.|+|+....+.. ..+.++ +|.++|.-++|.. .|.+||+++.||.|.||.-++++- ....
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~ 98 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH 98 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh
Confidence 455567888999999999999886654 334444 9999999999986 799999999999999999888753 3445
Q ss_pred cCCCCcEEEEEecC----CEEEEEeCCCcEEEEECcCCc--ceEeeecCcCCCEEEEEEecC---C-----------CEE
Q 011971 247 EGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQE--DFVSKLSGHKSEVCGLKWSYD---N-----------REL 306 (474)
Q Consensus 247 ~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~spd---~-----------~~l 306 (474)
..|...|++++|-+ -.|++++.||.|.+.+.+... ........|...|++++|.|. | +.|
T Consensus 99 ~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krl 178 (299)
T KOG1332|consen 99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRL 178 (299)
T ss_pred hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccccee
Confidence 68999999999975 489999999999999988762 223456789999999999985 4 569
Q ss_pred EEEeCCCcEEEEECCCCc--ceEEEccCCCcEEEEEECCCC---CcEEEEecCCCCCeEEEEECCCCce--eeee--cCC
Q 011971 307 ASGGNDNRLFVWNQHSTQ--PVLKYCEHTAAVKAIAWSPHL---HGLLASGGGTADRCIRFWNTTTNTH--LSCM--DTG 377 (474)
Q Consensus 307 asg~~Dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~sp~~---~~ll~sg~Gt~d~~I~iwd~~~~~~--~~~~--~~~ 377 (474)
++|+.|+.|+||+..+++ .-.++.+|...|..++|+|.- ...+++++ +||++.||-...... ..++ +..
T Consensus 179 vSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S--qDg~viIwt~~~e~e~wk~tll~~f~ 256 (299)
T KOG1332|consen 179 VSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS--QDGTVIIWTKDEEYEPWKKTLLEEFP 256 (299)
T ss_pred eccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec--CCCcEEEEEecCccCcccccccccCC
Confidence 999999999999998763 334578999999999999964 35677776 999999998763211 1111 245
Q ss_pred CCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011971 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (474)
Q Consensus 378 ~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 409 (474)
..+..+.||..|+.|++ ++.|+.|.+|.-.
T Consensus 257 ~~~w~vSWS~sGn~LaV--s~GdNkvtlwke~ 286 (299)
T KOG1332|consen 257 DVVWRVSWSLSGNILAV--SGGDNKVTLWKEN 286 (299)
T ss_pred cceEEEEEeccccEEEE--ecCCcEEEEEEeC
Confidence 67999999999999999 7789999999853
No 110
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=7.6e-23 Score=208.78 Aligned_cols=266 Identities=18% Similarity=0.260 Sum_probs=217.0
Q ss_pred eeeeeCCC--CcEEEEEcCCeEEEEeCCCC-CEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEe
Q 011971 170 LNLVDWSS--HNVLAVGLGNCVYLWNACSS-KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (474)
Q Consensus 170 v~~l~~s~--~~~la~~~d~~V~lwd~~~~-~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~ 246 (474)
++.++|.+ ..+++++.|+.|++|+..+. +....+. .+...|.+++.. +.+|++|+.+++|.+|.+..++.-..+
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~-~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID-ISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh-ccCceeEEEeec--ccceEEeeccceEEEeeCCCCCcccee
Confidence 67788877 56777788999999998765 3333432 156677777664 569999999999999999988776666
Q ss_pred cCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011971 247 EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (474)
Q Consensus 247 ~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~ 324 (474)
...+.++.+++++ +++++.|+.|-.|++.++.... ....+.+|..+|.+|.|+|++++||+.+-||.|+|||+.++.
T Consensus 93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s-~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~ 171 (933)
T KOG1274|consen 93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS-QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI 171 (933)
T ss_pred eeeeccceEEEEecCCcEEEeecCceeEEEEeccccc-hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccch
Confidence 6677888899997 4699999999999999998877 477899999999999999999999999999999999999987
Q ss_pred ceEEEcc--------CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec---CCCCeEEEEEcCCCCeEE
Q 011971 325 PVLKYCE--------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD---TGSQVCNLVWSKNVNELV 393 (474)
Q Consensus 325 ~~~~~~~--------h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~ 393 (474)
...++.+ ....+..++|+|++..+++.+ .|++|++|+..++.....+. ..+.++.+.|+|+|+||+
T Consensus 172 ~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~---~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiA 248 (933)
T KOG1274|consen 172 LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP---VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIA 248 (933)
T ss_pred hhhhcccCCccccccccceeeeeeecCCCCeEEeec---cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEe
Confidence 7666542 145678899999988888877 69999999999998877765 234499999999999999
Q ss_pred EEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEE
Q 011971 394 STHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFW 448 (474)
Q Consensus 394 ~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW 448 (474)
+ ++.+|+|.|||..+... ......|.+++|.|++..|-.-..-|+..+|
T Consensus 249 A--s~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 249 A--STLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred e--eccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9 88999999999988332 2234679999999988866555555555554
No 111
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=1.4e-22 Score=182.66 Aligned_cols=278 Identities=20% Similarity=0.327 Sum_probs=215.6
Q ss_pred ceeeeeCCC---CcEEEEEcCCeEEEEeCCCCC--------EEEEE------ecCCCCCEEEEEEcC-CCCEEEEEeCCC
Q 011971 169 YLNLVDWSS---HNVLAVGLGNCVYLWNACSSK--------VTKLC------DLGIDDSVCSVGWAN-RNTHLAVGTSHG 230 (474)
Q Consensus 169 ~v~~l~~s~---~~~la~~~d~~V~lwd~~~~~--------~~~~~------~~~~~~~V~~v~~sp-~g~~la~gs~dg 230 (474)
.||.++..+ ..+|++|.||.|.|||++... ....+ +-+|.-.|.++.|-| |.-.+.+++.|.
T Consensus 45 svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDh 124 (397)
T KOG4283|consen 45 SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDH 124 (397)
T ss_pred ccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccc
Confidence 467777665 346677789999999997543 11112 125777899999999 556888899999
Q ss_pred cEEEecCCCCeEEEEecCCCCcEEEEEecC-----CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCE
Q 011971 231 KVQIWDASRCKRVRTMEGHRLRVGALAWSS-----SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305 (474)
Q Consensus 231 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~-----~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 305 (474)
+++|||.++.+....++ ..+.|.+-+|++ -++++|.+|-.|++.|+..+. +...+.+|.+.|.++.|+|...+
T Consensus 125 tlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~sH~LsGHr~~vlaV~Wsp~~e~ 202 (397)
T KOG4283|consen 125 TLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FSHTLSGHRDGVLAVEWSPSSEW 202 (397)
T ss_pred eEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-ceeeeccccCceEEEEeccCcee
Confidence 99999999988877776 456777777774 478888999999999999887 78999999999999999997665
Q ss_pred -EEEEeCCCcEEEEECCCC-cceEE--------------EccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc
Q 011971 306 -LASGGNDNRLFVWNQHST-QPVLK--------------YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (474)
Q Consensus 306 -lasg~~Dg~v~iwd~~~~-~~~~~--------------~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~ 369 (474)
|++|+.||.|++||++.. .+... -..|.+.|..++|..++.+++.+| .|..+++|+..+|+
T Consensus 203 vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g---td~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 203 VLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG---TDDRIRVWNMESGR 279 (397)
T ss_pred EEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc---CccceEEeecccCc
Confidence 789999999999999753 11111 235788999999999999887776 68999999998876
Q ss_pred eeee-e-------cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeC
Q 011971 370 HLSC-M-------DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAG 441 (474)
Q Consensus 370 ~~~~-~-------~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~ 441 (474)
.... + ..+-.+. +. +.+...++.. -.++.+.++.+-++..+..+.+|-..|.+.++-|+=+...+|..
T Consensus 280 ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~--p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~ 355 (397)
T KOG4283|consen 280 NTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLF--PNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDM 355 (397)
T ss_pred ccccccccccccccccceEE-Ee-ecccceEEEE--ecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcccc
Confidence 4211 1 1111122 33 4444455442 24589999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCC
Q 011971 442 DETLRFWNVFPSPK 455 (474)
Q Consensus 442 Dg~I~iW~l~~~~~ 455 (474)
|+.|..|-.....+
T Consensus 356 d~ni~~w~p~l~~p 369 (397)
T KOG4283|consen 356 NGNIYMWSPALKSP 369 (397)
T ss_pred CCccccccccccCC
Confidence 99999998844433
No 112
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=3.8e-23 Score=203.30 Aligned_cols=274 Identities=21% Similarity=0.304 Sum_probs=209.3
Q ss_pred CcEEEEEc-CCeEEEEeCCCCCEE-----EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE--ecCC
Q 011971 178 HNVLAVGL-GNCVYLWNACSSKVT-----KLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT--MEGH 249 (474)
Q Consensus 178 ~~~la~~~-d~~V~lwd~~~~~~~-----~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~--~~~h 249 (474)
..+|+++. +|.|.++|....... ....+.|.+.|..+.|.|....|++++.|.++++||++..+++.. +.+|
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 56888886 689999998755433 111237899999999999667899999999999999999988877 8899
Q ss_pred CCcEEEEEec---CCEEEEEeCCCcEEEEECcCCcc--------------------------eEeeecCcCCCEEE---E
Q 011971 250 RLRVGALAWS---SSLLSSGSRDKSILQRDIRAQED--------------------------FVSKLSGHKSEVCG---L 297 (474)
Q Consensus 250 ~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~--------------------------~~~~~~~h~~~V~~---l 297 (474)
...|.+++|. +..|++|++||.|.|||++.... -+....++...|.+ +
T Consensus 144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv 223 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV 223 (720)
T ss_pred ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence 9999999997 58999999999999999985330 01112234444444 5
Q ss_pred EEecCCCEEEEEeC-CCcEEEEECCCCcceEE--------EccC---CCcEEEEEECCCCCcEEEEecCCCCCeEEEEEC
Q 011971 298 KWSYDNRELASGGN-DNRLFVWNQHSTQPVLK--------YCEH---TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365 (474)
Q Consensus 298 ~~spd~~~lasg~~-Dg~v~iwd~~~~~~~~~--------~~~h---~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~ 365 (474)
.+..|...||+++. |+.|+|||++....... +..| ...+.++.....|.+|+|++ .|+.|++||+
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC---tD~sIy~ynm 300 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC---TDNSIYFYNM 300 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe---cCCcEEEEec
Confidence 55578889999888 99999999987543322 2223 34577888888899999998 5999999999
Q ss_pred CCCce--eeeecC---CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-eeEEEcCCCccEEEEEECCC-CCEEEE
Q 011971 366 TTNTH--LSCMDT---GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS-KLATLTGHTFRVLYLAISPD-GQTIVT 438 (474)
Q Consensus 366 ~~~~~--~~~~~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~spd-g~~l~t 438 (474)
.+... +..+.+ ...-..-..+|++.++++ |+.|.+.++|.+.+.+ ....+.+|...|++++|.|. -.-++|
T Consensus 301 ~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~S--gSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~T 378 (720)
T KOG0321|consen 301 RSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLS--GSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVAT 378 (720)
T ss_pred cccCcCchhhccCcccceeeeeeecCCCCceEec--cCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCcee
Confidence 86432 222221 122334457899999999 8999999999998764 46667899999999999883 235778
Q ss_pred EeCCCcEEEEeCCCCCCC
Q 011971 439 GAGDETLRFWNVFPSPKS 456 (474)
Q Consensus 439 ~s~Dg~I~iW~l~~~~~~ 456 (474)
++.|-++++|++..+-..
T Consensus 379 cSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 379 CSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred eccCcceEEEeccCchhh
Confidence 899999999999766543
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=5.9e-23 Score=193.79 Aligned_cols=236 Identities=14% Similarity=0.239 Sum_probs=204.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEe
Q 011971 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVS 285 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~ 285 (474)
...++++...+....+++|+.|..+.++|....+.+.+++||...|+.+.+++ ..+++++.|..|++|...... ...
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~~ 297 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EPT 297 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-Ccc
Confidence 45688888888878899999999999999999999999999999999999996 678999999999999987766 456
Q ss_pred eecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEcc--CCCcEEEEEECCCCCcEEEEecCCCCCeEEEE
Q 011971 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (474)
Q Consensus 286 ~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~--h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iw 363 (474)
....|..+|+.+..+|.|.||+++++|++..+.|++++..+..... ..-.+++.+|+|||- ++.+| +.|+.|+||
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtg--t~d~~vkiw 374 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTG--TPDGVVKIW 374 (506)
T ss_pred ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEecc--CCCceEEEE
Confidence 6788999999999999999999999999999999999988766543 334689999999985 66665 499999999
Q ss_pred ECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCC-CccEEEEEECCCCCEEEEEeC
Q 011971 364 NTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH-TFRVLYLAISPDGQTIVTGAG 441 (474)
Q Consensus 364 d~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~t~s~ 441 (474)
|+.++..+..+. |.++|..++|+.+|-+|++ +.+|+.|++||++..+...++.-. ...|.++.|.+.|.+|+.++.
T Consensus 375 dlks~~~~a~Fpght~~vk~i~FsENGY~Lat--~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 375 DLKSQTNVAKFPGHTGPVKAISFSENGYWLAT--AADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred EcCCccccccCCCCCCceeEEEeccCceEEEE--EecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecc
Confidence 999998887776 6678999999999999999 679999999999988877777643 347999999999999999977
Q ss_pred CCcEEEEe
Q 011971 442 DETLRFWN 449 (474)
Q Consensus 442 Dg~I~iW~ 449 (474)
|=.|++++
T Consensus 453 ~l~Vy~~~ 460 (506)
T KOG0289|consen 453 DLQVYICK 460 (506)
T ss_pred eeEEEEEe
Confidence 65555544
No 114
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=3.4e-23 Score=196.88 Aligned_cols=243 Identities=23% Similarity=0.385 Sum_probs=209.7
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEE----E-------------e-cCCCCcEEEEEec--CCEEEE
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR----T-------------M-EGHRLRVGALAWS--SSLLSS 265 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~----~-------------~-~~h~~~V~~l~~~--~~~l~s 265 (474)
.|.-+|+|++++|++.+.++++.+|+|.-|++.+++..+ . - ++|...+.+++.+ +.+|++
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 688899999999999999999999999999998776431 1 0 2678889999997 589999
Q ss_pred EeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCC
Q 011971 266 GSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL 345 (474)
Q Consensus 266 gs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~ 345 (474)
|+.|..|.||+.++.+ .+..+.+|.+.|.+++|-.....|++++.|..|++|++.....+.++.+|+..|.+|....-+
T Consensus 220 gg~d~~v~Iw~~~t~e-hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~re 298 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLE-HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRE 298 (479)
T ss_pred cCCCceEEEecCcccc-hhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhccc
Confidence 9999999999999988 477899999999999999888899999999999999999998899999999999999888765
Q ss_pred CcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEc-CC----
Q 011971 346 HGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLT-GH---- 420 (474)
Q Consensus 346 ~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~h---- 420 (474)
. .+..|+ .|+++++|++.....+....+.+.+-|++|-.+ .++++ |+.+|.|.+|++...+++++.. .|
T Consensus 299 R-~vtVGg--rDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~Hfvs--GSdnG~IaLWs~~KKkplf~~~~AHgv~~ 372 (479)
T KOG0299|consen 299 R-CVTVGG--RDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVS--GSDNGSIALWSLLKKKPLFTSRLAHGVIP 372 (479)
T ss_pred c-eEEecc--ccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceee--ccCCceEEEeeecccCceeEeeccccccC
Confidence 5 566665 899999999976666666667778888888754 56677 9999999999999998887764 22
Q ss_pred -------CccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCC
Q 011971 421 -------TFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 421 -------~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
...|++|+..|...++++|+.+|.|++|.+..+-.
T Consensus 373 ~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred CccccccccceeeeEecccCceEEecCCCCceEEEEecCCcc
Confidence 23799999999999999999999999999998844
No 115
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5e-23 Score=194.98 Aligned_cols=275 Identities=21% Similarity=0.382 Sum_probs=206.2
Q ss_pred CcEEEEEc--CC----eEEEEeCCCCCEEEEEecCCCCCEEEEEEcC-------CCCEEEEEeCCCcEEEecCCCC----
Q 011971 178 HNVLAVGL--GN----CVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-------RNTHLAVGTSHGKVQIWDASRC---- 240 (474)
Q Consensus 178 ~~~la~~~--d~----~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp-------~g~~la~gs~dg~I~iwd~~~~---- 240 (474)
+++|+++. ++ .||||+-.........++--.....|++|.. .|+|+|+|+.+..|.|||+.-.
T Consensus 137 DnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~ 216 (463)
T KOG0270|consen 137 DNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVL 216 (463)
T ss_pred CcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccc
Confidence 77788774 22 5788886653332111111134456788863 3689999999999999997411
Q ss_pred -----------------eEEEEecCCCCcEEEEEec---CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEe
Q 011971 241 -----------------KRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWS 300 (474)
Q Consensus 241 -----------------~~~~~~~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 300 (474)
+.-....+|+..|.+|+|+ .+.|++|+.|.+|++||+.+++ +...+..|...|.++.|+
T Consensus 217 P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~-p~~s~~~~~k~Vq~l~wh 295 (463)
T KOG0270|consen 217 PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK-PKSSITHHGKKVQTLEWH 295 (463)
T ss_pred cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC-cceehhhcCCceeEEEec
Confidence 0011123799999999998 4899999999999999999988 677788899999999999
Q ss_pred c-CCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ceeeeec-CC
Q 011971 301 Y-DNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLSCMD-TG 377 (474)
Q Consensus 301 p-d~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~-~~~~~~~-~~ 377 (474)
| ....|++|+.|++|.+.|.+........-.-.+.|..++|.|+....+.++. .||+++-+|++.. +++.++. |.
T Consensus 296 ~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t--ddG~v~~~D~R~~~~~vwt~~AHd 373 (463)
T KOG0270|consen 296 PYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST--DDGTVYYFDIRNPGKPVWTLKAHD 373 (463)
T ss_pred CCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec--CCceEEeeecCCCCCceeEEEecc
Confidence 9 4678999999999999999953322222234678999999999988888764 9999999999975 7777776 77
Q ss_pred CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce--eEEEcCCCccEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCC
Q 011971 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK--LATLTGHTFRVLYLAISPDGQ-TIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 378 ~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~-~l~t~s~Dg~I~iW~l~~~~ 454 (474)
..|.+++++..-..++++ ++.++.|++|++..-.. +..-.-.-++..|.++.|+-. +++.|+..+.+++||++...
T Consensus 374 ~~ISgl~~n~~~p~~l~t-~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 374 DEISGLSVNIQTPGLLST-ASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred CCcceEEecCCCCcceee-ccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 889999999998888777 78999999999864332 221111223466777777644 66778888889999999876
Q ss_pred CC
Q 011971 455 KS 456 (474)
Q Consensus 455 ~~ 456 (474)
..
T Consensus 453 ~V 454 (463)
T KOG0270|consen 453 PV 454 (463)
T ss_pred hH
Confidence 43
No 116
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.6e-23 Score=184.30 Aligned_cols=248 Identities=20% Similarity=0.342 Sum_probs=197.9
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC---eEEEEecCCCCcEEEEEec----CCEEEEEeCCCcEEE
Q 011971 202 LCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC---KRVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQ 274 (474)
Q Consensus 202 ~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~---~~~~~~~~h~~~V~~l~~~----~~~l~sgs~dg~I~i 274 (474)
.++..|.+.|..+...--|+.||+++.|++|+|+.+... +.+.++.+|.++|+.++|- +.+|++++.||.|.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 344478889998888888999999999999999998754 5788999999999999995 589999999999999
Q ss_pred EECcCCc-ceEeeecCcCCCEEEEEEecC--CCEEEEEeCCCcEEEEECCCC---cceEEEccCCCcEEEEEECCC---C
Q 011971 275 RDIRAQE-DFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFVWNQHST---QPVLKYCEHTAAVKAIAWSPH---L 345 (474)
Q Consensus 275 wd~~~~~-~~~~~~~~h~~~V~~l~~spd--~~~lasg~~Dg~v~iwd~~~~---~~~~~~~~h~~~V~~l~~sp~---~ 345 (474)
|.-..+. ........|...|++++|-|. |-.|++++.||.|.|.+.+.. ........|.-.|++++|.|- |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 9987664 223456779999999999985 568999999999999998764 223344579999999999986 3
Q ss_pred ----------CcEEEEecCCCCCeEEEEECCCCcee--eee-cCCCCeEEEEEcCCC----CeEEEEEecCCCeEEEEEC
Q 011971 346 ----------HGLLASGGGTADRCIRFWNTTTNTHL--SCM-DTGSQVCNLVWSKNV----NELVSTHGYSQNQIIVWRY 408 (474)
Q Consensus 346 ----------~~ll~sg~Gt~d~~I~iwd~~~~~~~--~~~-~~~~~v~~l~~s~~~----~~l~~~~g~~dg~I~iwd~ 408 (474)
..-|++|| .|..|+||+..++.-+ ..+ .|...|..++|.|.- ..|++ ++.||.+.||..
T Consensus 165 ~~~~~~~~~~~krlvSgG--cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS--~SqDg~viIwt~ 240 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGG--CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS--CSQDGTVIIWTK 240 (299)
T ss_pred cccccCcccccceeeccC--CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE--ecCCCcEEEEEe
Confidence 12477776 8999999999886322 223 366779999999965 34555 889999999987
Q ss_pred CCC---ceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 011971 409 PTM---SKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 409 ~~~---~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~ 453 (474)
... -....+......+..+.||..|..|+.+++|+.|.+|.-...
T Consensus 241 ~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred cCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 622 112233445678999999999999999999999999986544
No 117
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.1e-23 Score=209.72 Aligned_cols=235 Identities=15% Similarity=0.296 Sum_probs=189.9
Q ss_pred CCcceeeeeCCC-CcEEEEE-cCCeEEEEeCCCCC---------------------------------------------
Q 011971 166 DDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSK--------------------------------------------- 198 (474)
Q Consensus 166 ~d~~v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~--------------------------------------------- 198 (474)
.+-.+-++.|++ +.+||.| .|+.|+||.+...+
T Consensus 266 h~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s 345 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQS 345 (712)
T ss_pred cCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCC
Confidence 344588999998 7777776 48999999875500
Q ss_pred -E------------EEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC---C
Q 011971 199 -V------------TKLCD-LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS---S 261 (474)
Q Consensus 199 -~------------~~~~~-~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~---~ 261 (474)
. ..++. .||.+.|..|.|+.++ +|++++.|.+|++|++....+++.+. |..-|+|++|+| +
T Consensus 346 ~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 346 PCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDR 423 (712)
T ss_pred ccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCC
Confidence 0 00011 2899999999999764 79999999999999999999999987 999999999996 8
Q ss_pred EEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEc---------cC
Q 011971 262 LLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC---------EH 332 (474)
Q Consensus 262 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~---------~h 332 (474)
+|++|+-||.|+||++...+ +.....-..-|++++|.|||+..++|+.+|.+++|+....+....+. .|
T Consensus 424 yFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred cEeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999998765 44445555889999999999999999999999999998876655442 13
Q ss_pred CCcEEEEEECCCCCc-EEEEecCCCCCeEEEEECCCCceeeeecC---CCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011971 333 TAAVKAIAWSPHLHG-LLASGGGTADRCIRFWNTTTNTHLSCMDT---GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (474)
Q Consensus 333 ~~~V~~l~~sp~~~~-ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 408 (474)
. .|+.+.|.|.... +|++. +|..|+|||.++..++..++. ...-....|+.||++|++ +++|..|+||++
T Consensus 502 ~-rITG~Q~~p~~~~~vLVTS---nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs--~seDs~VYiW~~ 575 (712)
T KOG0283|consen 502 K-RITGLQFFPGDPDEVLVTS---NDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVS--ASEDSWVYIWKN 575 (712)
T ss_pred c-eeeeeEecCCCCCeEEEec---CCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEE--eecCceEEEEeC
Confidence 3 7999999986654 66665 799999999988887777663 223345678889999999 779999999998
Q ss_pred CC
Q 011971 409 PT 410 (474)
Q Consensus 409 ~~ 410 (474)
..
T Consensus 576 ~~ 577 (712)
T KOG0283|consen 576 DS 577 (712)
T ss_pred CC
Confidence 54
No 118
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.7e-24 Score=213.82 Aligned_cols=239 Identities=17% Similarity=0.322 Sum_probs=194.0
Q ss_pred ceeeeeCCC--CcEEEEE-cCCeEEEEeCCC---CCEEEEEecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEecCCCCe
Q 011971 169 YLNLVDWSS--HNVLAVG-LGNCVYLWNACS---SKVTKLCDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASRCK 241 (474)
Q Consensus 169 ~v~~l~~s~--~~~la~~-~d~~V~lwd~~~---~~~~~~~~~~~~~~V~~v~~sp~-g~~la~gs~dg~I~iwd~~~~~ 241 (474)
..+.|.|+. .++||++ ..|.|.+||+.. .+....+. .|...|.++.|++. ..+|++|+.||+|++||+...+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence 356678886 5666665 578999999986 23322332 79999999999985 4789999999999999999999
Q ss_pred EEEEecCCCCcEEEEEec---CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 011971 242 RVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVW 318 (474)
Q Consensus 242 ~~~~~~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iw 318 (474)
...++.+....|.++.|+ ++.|+++...|.+.+||+|....+...+.+|.++|.++.|+|++.+||+||.|++|+||
T Consensus 168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW 247 (839)
T ss_pred ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence 999999999999999998 47999999999999999999998999999999999999999999999999999999999
Q ss_pred ECCCCcc--eEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-eeeec-CCCCeEEEEEcCCCCeEEE
Q 011971 319 NQHSTQP--VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH-LSCMD-TGSQVCNLVWSKNVNELVS 394 (474)
Q Consensus 319 d~~~~~~--~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~-~~~~~-~~~~v~~l~~s~~~~~l~~ 394 (474)
|..+.+. +.++ ...++|.+|+|-|...+.|++++--.|-.|+|||++..-. ...+. |...++.++|......++.
T Consensus 248 d~t~~~~~~~~tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~ 326 (839)
T KOG0269|consen 248 DMTDSRAKPKHTI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLW 326 (839)
T ss_pred eccCCCccceeEE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeE
Confidence 9986543 4444 4467899999999999999887655689999999986543 33333 6667888888764333333
Q ss_pred EEecCCCeEEEEECCC
Q 011971 395 THGYSQNQIIVWRYPT 410 (474)
Q Consensus 395 ~~g~~dg~I~iwd~~~ 410 (474)
. ++.|+.|..-.+++
T Consensus 327 s-~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 327 S-CSKDGTVLQHLFKN 341 (839)
T ss_pred e-ecCccHHHHhhhhc
Confidence 2 66888776555544
No 119
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=4.4e-23 Score=197.34 Aligned_cols=262 Identities=19% Similarity=0.322 Sum_probs=213.9
Q ss_pred eeeeeCCCCcEEEEE---cCCeEEEEeCCC--CCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEE
Q 011971 170 LNLVDWSSHNVLAVG---LGNCVYLWNACS--SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (474)
Q Consensus 170 v~~l~~s~~~~la~~---~d~~V~lwd~~~--~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~ 244 (474)
++.+.|+..++|.++ .|..|.+|.-.. +++..+-..+ .+.-.|++......|+++|+..+.|+|||+....+.+
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~-gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLT-GDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccc-cchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 678899997644443 355888886543 2333333222 2355566655566899999999999999999878888
Q ss_pred EecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeec-CcCCCEEEEEEecCCCE-EEEEeCCCcEEEEEC
Q 011971 245 TMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLS-GHKSEVCGLKWSYDNRE-LASGGNDNRLFVWNQ 320 (474)
Q Consensus 245 ~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spd~~~-lasg~~Dg~v~iwd~ 320 (474)
.+++|...|+++.++ ..+|++++..|.|.|..+.+... ...+. +..+.|.-+.|++..+. |.+++.+|.|.+||+
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 899999999999998 57999999999999999988764 33333 33456778999997664 667899999999999
Q ss_pred CCCcceEEE-ccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecC
Q 011971 321 HSTQPVLKY-CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYS 399 (474)
Q Consensus 321 ~~~~~~~~~-~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~ 399 (474)
....+++.+ ..|.++...|+|+|....|+++-| .|+.|.+||++..+...++....+...++|+++|.+|++ |..
T Consensus 195 ~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG--~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~a--G~s 270 (673)
T KOG4378|consen 195 QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG--YDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCA--GNS 270 (673)
T ss_pred cCCCcccchhhhccCCcCcceecCCccceEEEec--ccceEEEeecccccccceeeecCCcceeeecCCceEEEe--ecC
Confidence 988887665 469999999999999999999987 999999999999988899989999999999999999999 999
Q ss_pred CCeEEEEECCC-CceeEEEcCCCccEEEEEECCCCCEEEE
Q 011971 400 QNQIIVWRYPT-MSKLATLTGHTFRVLYLAISPDGQTIVT 438 (474)
Q Consensus 400 dg~I~iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~l~t 438 (474)
.|.|..||++. ..++..+..|...|++++|-|.. .+++
T Consensus 271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~-tvlt 309 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP-TVLT 309 (673)
T ss_pred CceEEEEecccCCCCceEeeecccceeEEEeeecc-eeee
Confidence 99999999985 56788899999999999998764 4443
No 120
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.6e-22 Score=182.84 Aligned_cols=240 Identities=21% Similarity=0.292 Sum_probs=184.0
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC------------------------------------eEEEEec--
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC------------------------------------KRVRTME-- 247 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~------------------------------------~~~~~~~-- 247 (474)
+|.+.|++++|+.||++||+++.|+.|+||++... ..++.+.
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~ 163 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV 163 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence 89999999999999999999999999999987431 1111110
Q ss_pred ---------------------CCCCcEEEEEe--cCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCC
Q 011971 248 ---------------------GHRLRVGALAW--SSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR 304 (474)
Q Consensus 248 ---------------------~h~~~V~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~ 304 (474)
.|...|..+-. +..+|++++.|..|.+|+++ ++ .+..+......-+..+.+|+|+
T Consensus 164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq-~L~~idtnq~~n~~aavSP~GR 241 (420)
T KOG2096|consen 164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ-LLQSIDTNQSSNYDAAVSPDGR 241 (420)
T ss_pred ecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc-eeeeeccccccccceeeCCCCc
Confidence 11122222222 13689999999999999998 33 5667766666677888999999
Q ss_pred EEEEEeCCCcEEEEECC---CC-----cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC-------c
Q 011971 305 ELASGGNDNRLFVWNQH---ST-----QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-------T 369 (474)
Q Consensus 305 ~lasg~~Dg~v~iwd~~---~~-----~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~-------~ 369 (474)
++|+++..-.|+||..- .| ..+..+++|.++|..++|+++...++... .||++++||+.-. +
T Consensus 242 Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS---kDG~wriwdtdVrY~~~qDpk 318 (420)
T KOG2096|consen 242 FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS---KDGKWRIWDTDVRYEAGQDPK 318 (420)
T ss_pred EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe---cCCcEEEeeccceEecCCCch
Confidence 99999999999999863 22 34667889999999999999988655543 8999999998632 1
Q ss_pred eeeee-----cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEc-CCCccEEEEEECCCCCEEEEEeCCC
Q 011971 370 HLSCM-----DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLT-GHTFRVLYLAISPDGQTIVTGAGDE 443 (474)
Q Consensus 370 ~~~~~-----~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~~l~t~s~Dg 443 (474)
.+.+. ..++..+.+.++|+|+.|++++| ..|.+|..++++...+++ .|...|.+++|+++|++++|++ |.
T Consensus 319 ~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g---s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 319 ILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG---SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred HhhcCCcchhhcCCCceEEEeCCCCcEEEeecC---CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 22222 23556779999999999999755 569999999888877775 6999999999999999999884 77
Q ss_pred cEEEEeCCCCC
Q 011971 444 TLRFWNVFPSP 454 (474)
Q Consensus 444 ~I~iW~l~~~~ 454 (474)
.+++..-.++.
T Consensus 395 ~vrv~~ntpg~ 405 (420)
T KOG2096|consen 395 YVRVIRNTPGW 405 (420)
T ss_pred eeeeecCCCch
Confidence 88887744443
No 121
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.1e-22 Score=183.14 Aligned_cols=278 Identities=15% Similarity=0.213 Sum_probs=218.2
Q ss_pred eeeeeCCC-CcEEEEEc-CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec
Q 011971 170 LNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (474)
Q Consensus 170 v~~l~~s~-~~~la~~~-d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~ 247 (474)
-+|+.|++ +.+||+|. +|.|.|||..|..+-+++. +|..+|++++||++|+.|++++.|..|.+||+..+.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls-aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS-AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh-ccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 67899998 88888886 8999999999998777765 799999999999999999999999999999999999888887
Q ss_pred CCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeeecCcC---CCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011971 248 GHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHK---SEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (474)
Q Consensus 248 ~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~---~~V~~l~~spd~~~lasg~~Dg~v~iwd~~ 321 (474)
...+|+...|++ +..++.-.+..-.+.++..+.+.+....... ....+..|.+.|+++++|...|.+.++|..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 678899999985 4555555555555555554332221111111 112233588999999999999999999999
Q ss_pred CCcceEEEccCC-CcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC-------cee--eee---cCCCCeEEEEEcCC
Q 011971 322 STQPVLKYCEHT-AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-------THL--SCM---DTGSQVCNLVWSKN 388 (474)
Q Consensus 322 ~~~~~~~~~~h~-~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~-------~~~--~~~---~~~~~v~~l~~s~~ 388 (474)
+.+++..++-.. ..|+.+.++-.|..++.-. .|+.||.|+++.- +.. +.+ -...+=.+++|+.+
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNt---sDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINT---SDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEec---CCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence 999998887655 7899999999998766644 7999999998631 111 111 12345567889999
Q ss_pred CCeEEEEEecCCCeEEEEECCCCceeEEEcCCC-ccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 389 VNELVSTHGYSQNQIIVWRYPTMSKLATLTGHT-FRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 389 ~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
|.+++.++ .....++||.-..|..+..+.|.. .....+.|+|-...|++- ..|.+++|.+...+
T Consensus 261 geYv~a~s-~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 261 GEYVCAGS-ARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred ccEEEecc-ccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeeccc
Confidence 99998863 567899999999999999999887 567889999988788877 77899999987654
No 122
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=1.1e-22 Score=201.98 Aligned_cols=231 Identities=26% Similarity=0.400 Sum_probs=198.1
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEE--EEecCCCCcEEE-EEecC---CEEEEEeCCCcEEEEECcC
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV--RTMEGHRLRVGA-LAWSS---SLLSSGSRDKSILQRDIRA 279 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~--~~~~~h~~~V~~-l~~~~---~~l~sgs~dg~I~iwd~~~ 279 (474)
+|...|..++..+.. .+++++.||++++|+-...+.+ ..+.+|.+-|.. +++-+ ..+++|+.|.+|.+|....
T Consensus 12 gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~ 90 (745)
T KOG0301|consen 12 GHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ 90 (745)
T ss_pred cCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCC
Confidence 899999998877654 7889999999999997655544 346678777776 77753 5799999999999999988
Q ss_pred CcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCe
Q 011971 280 QEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC 359 (474)
Q Consensus 280 ~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~ 359 (474)
.. +...+.+|++.||++....++. +++|+.|.++++|-. ++....+.+|++.|.+++.-|.+ .+++|+ .|++
T Consensus 91 ~~-P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~--~~vTgs--aDKt 162 (745)
T KOG0301|consen 91 AE-PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN--TYVTGS--ADKT 162 (745)
T ss_pred CC-chhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC--cEEecc--Ccce
Confidence 77 6889999999999999887776 999999999999985 45666789999999999999987 667766 8999
Q ss_pred EEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEE
Q 011971 360 IRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVT 438 (474)
Q Consensus 360 I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t 438 (474)
|++|.- ++.++++. |..-|..+++-+++.++-+ +.||.|++|++ +++.+.++.+|+.-|.++....++..|++
T Consensus 163 IklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flSc---sNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs 236 (745)
T KOG0301|consen 163 IKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSC---SNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVS 236 (745)
T ss_pred eeeccC--CchhhhhccchhheeeeEEecCCCeEee---cCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEE
Confidence 999975 67777776 5667999999888766554 48999999999 89999999999999999998888889999
Q ss_pred EeCCCcEEEEeCC
Q 011971 439 GAGDETLRFWNVF 451 (474)
Q Consensus 439 ~s~Dg~I~iW~l~ 451 (474)
+++|++++||+..
T Consensus 237 ~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 237 TGEDRTLRIWKKD 249 (745)
T ss_pred ecCCceEEEeecC
Confidence 9999999999987
No 123
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=1.1e-22 Score=195.55 Aligned_cols=249 Identities=20% Similarity=0.370 Sum_probs=194.3
Q ss_pred cccccCCCCCCCcceeeeeCCC--CcEEEEEcCCeEEEEeCCCCCEEEEEe-----------cCCCCCEEEEEEcCCC-C
Q 011971 156 YKILDAPALQDDFYLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCD-----------LGIDDSVCSVGWANRN-T 221 (474)
Q Consensus 156 ~~~l~ap~~~~d~~v~~l~~s~--~~~la~~~d~~V~lwd~~~~~~~~~~~-----------~~~~~~V~~v~~sp~g-~ 221 (474)
+|.|+..+. ..++.+.|++ +.+|+++.....+|+|-...++...+. -||...++|.+|+|+. .
T Consensus 206 fr~l~P~E~---h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~ 282 (641)
T KOG0772|consen 206 FRQLQPCET---HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE 282 (641)
T ss_pred hhccCcccc---cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc
Confidence 455554333 3488999998 678888888899999988776655542 2788999999999975 5
Q ss_pred EEEEEeCCCcEEEecCCCCeEE-EEe-----cCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCc--ceEeeecCcC
Q 011971 222 HLAVGTSHGKVQIWDASRCKRV-RTM-----EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE--DFVSKLSGHK 291 (474)
Q Consensus 222 ~la~gs~dg~I~iwd~~~~~~~-~~~-----~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~ 291 (474)
.+++++.||+++|||++..+.. ..+ .+..-.++.++|+ +..+++|+.||.|.+|+..... .....-.+|.
T Consensus 283 ~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~ 362 (641)
T KOG0772|consen 283 EFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHL 362 (641)
T ss_pred ceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccC
Confidence 7889999999999999865432 222 2445678999998 4789999999999999986543 1233345677
Q ss_pred C--CEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-ceEEEcc--CCCcEEEEEECCCCCcEEEEec----CCCCCeEEE
Q 011971 292 S--EVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ-PVLKYCE--HTAAVKAIAWSPHLHGLLASGG----GTADRCIRF 362 (474)
Q Consensus 292 ~--~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~-~~~~~~~--h~~~V~~l~~sp~~~~ll~sg~----Gt~d~~I~i 362 (474)
. .|++|.|++||++|++-+.|+++++||++..+ ++....+ ...+-+.++|+|+.+ |+++|. |...+.+.|
T Consensus 363 ~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f 441 (641)
T KOG0772|consen 363 PGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFF 441 (641)
T ss_pred CCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEE
Confidence 6 99999999999999999999999999999764 4544443 334567899999976 777764 234578999
Q ss_pred EECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011971 363 WNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (474)
Q Consensus 363 wd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 410 (474)
||..+...+..+. ....|..+.|+|.-+.+++ |+.||.++||--++
T Consensus 442 ~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~--gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 442 FDRMTLDTVYKIDISTASVVRCLWHPKLNQIFA--GSGDGTAHVYYDPN 488 (641)
T ss_pred EeccceeeEEEecCCCceEEEEeecchhhheee--ecCCCceEEEECcc
Confidence 9999999888887 4567999999999999999 88899999986543
No 124
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.7e-21 Score=191.69 Aligned_cols=274 Identities=20% Similarity=0.302 Sum_probs=222.4
Q ss_pred eeeeeCCC-CcEEEEE-cCCeEEEEeCCCCCEEE-EEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEe
Q 011971 170 LNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTK-LCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (474)
Q Consensus 170 v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~~~~-~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~ 246 (474)
+.+++++. .+.||++ .+|.|.||++..+=... .+..+.+..|-+++|++.+ .|++.+.+|.|.-||+.+++....+
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~ 106 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQKYNI 106 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCceeEEe
Confidence 78889887 6778888 48999999998765443 3333557899999999655 5777778999999999999999999
Q ss_pred cCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcce-EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011971 247 EGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDF-VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (474)
Q Consensus 247 ~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~ 323 (474)
....+.|++++.++ ..++.|+.||.+..+++..+.-. ...+...++.|.+++|+|++..|+.|+.||.|++||...+
T Consensus 107 d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~ 186 (691)
T KOG2048|consen 107 DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSG 186 (691)
T ss_pred cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCC
Confidence 99999999999985 78999999997777777665421 2234445689999999999999999999999999999998
Q ss_pred cceEEEc-------c-CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEE
Q 011971 324 QPVLKYC-------E-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVS 394 (474)
Q Consensus 324 ~~~~~~~-------~-h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~ 394 (474)
..++... . ...-|.++.|-.++ .+++|. .-|+|.|||...+.+++.+. +.+.|.+++-++++..+++
T Consensus 187 ~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgD--S~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfs 262 (691)
T KOG2048|consen 187 QTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGD--SAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFS 262 (691)
T ss_pred ceEEEeeecccccccCCceEEEEEEEeecC--cEEEec--CCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEE
Confidence 7766321 1 33457788887654 677775 78999999999999998887 6788999999999999999
Q ss_pred EEecCCCeEEEEECCCCce----eEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 395 THGYSQNQIIVWRYPTMSK----LATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 395 ~~g~~dg~I~iwd~~~~~~----~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
++.|+.|..|...+... ......|...|.+++..++ .|++|+.|.++.+-....
T Consensus 263 --aGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 263 --AGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred --ccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 67899999888765533 2233468888999999877 899999999998876654
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=6e-23 Score=196.63 Aligned_cols=254 Identities=22% Similarity=0.295 Sum_probs=209.6
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC---eEEEEecC--CCCcEEEEEec--CCEEEEEeCCCcEEEEE
Q 011971 204 DLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC---KRVRTMEG--HRLRVGALAWS--SSLLSSGSRDKSILQRD 276 (474)
Q Consensus 204 ~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~---~~~~~~~~--h~~~V~~l~~~--~~~l~sgs~dg~I~iwd 276 (474)
.+.|.+-|.++.++...+++++|+ .|.|+|||+... ..+..+.. ...-|.++... +..|++|+.-.++.|||
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 457888999999999999999997 578999998643 23333332 33455555554 68999999999999999
Q ss_pred CcCCcceEe-eecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCC
Q 011971 277 IRAQEDFVS-KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGT 355 (474)
Q Consensus 277 ~~~~~~~~~-~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt 355 (474)
+......+. .+..-......|+.+||.+..+++..||.|.|||+.+...+..|.+|...+.||..+++|..|. +||
T Consensus 494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklW-TGG-- 570 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLW-TGG-- 570 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceee-cCC--
Confidence 988763222 2333334577899999999999999999999999999999999999999999999999998655 454
Q ss_pred CCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCE
Q 011971 356 ADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQT 435 (474)
Q Consensus 356 ~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~ 435 (474)
-|.+||.||++.+..+...+..++|.++.++|++.++++ |-..+.+.|..... .....+..|...|.++.|.+.|++
T Consensus 571 lDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlav--GMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkw 647 (705)
T KOG0639|consen 571 LDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAV--GMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKW 647 (705)
T ss_pred CccceeehhhhhhhhhhhhhhhhhheecccCCCccceee--ecccCcEEEEecCC-ccceeecccccEEEEEEecccCce
Confidence 899999999999999999999999999999999999999 99999999888644 334556779999999999999999
Q ss_pred EEEEeCCCcEEEEeCCCCCCCCCCCCCcc
Q 011971 436 IVTGAGDETLRFWNVFPSPKSQNTDSEIG 464 (474)
Q Consensus 436 l~t~s~Dg~I~iW~l~~~~~~~~~~~~~~ 464 (474)
+++.+.|..+..|..--+...-..++.+.
T Consensus 648 fvStGkDnlLnawrtPyGasiFqskE~Ss 676 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRTPYGASIFQSKESSS 676 (705)
T ss_pred eeecCchhhhhhccCccccceeeccccCc
Confidence 99999999999999887776544444333
No 126
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=6.9e-24 Score=211.09 Aligned_cols=226 Identities=26% Similarity=0.438 Sum_probs=193.7
Q ss_pred cceeeeeCC-CCcEEEEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE
Q 011971 168 FYLNLVDWS-SHNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 168 ~~v~~l~~s-~~~~la~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~ 245 (474)
.+++++..- ...+++.| .+..+-||....-..+..+. +|..+|.||.|+++..+|++|+.+|+|++||++..+.+++
T Consensus 29 aav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~-~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrt 107 (825)
T KOG0267|consen 29 AAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLT-GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRT 107 (825)
T ss_pred hhhceeeeeccceeeccCCCceeeccccccCCchhheee-ccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhh
Confidence 345555532 24445544 45567799875444333333 8999999999999999999999999999999999999999
Q ss_pred ecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011971 246 MEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (474)
Q Consensus 246 ~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~ 323 (474)
+.+|...+..+.|+| .++++|+.|+.+.+||++... +...+.+|...|..+.|+|+|+++++|+.|++++|||+..|
T Consensus 108 Ltgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag 186 (825)
T KOG0267|consen 108 LTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG 186 (825)
T ss_pred hhccccCcceeeeccceEEeccccccccceehhhhccC-ceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccc
Confidence 999999999999996 688899999999999999766 68889999999999999999999999999999999999999
Q ss_pred cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-CCCeEEEEEcCCCCeEEEEEecCC
Q 011971 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-GSQVCNLVWSKNVNELVSTHGYSQ 400 (474)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~g~~d 400 (474)
+....|..|.+.+.++.|+|. +.|+++|+ .|++++|||+++.+.+...+. ...|.++.|++++..+++ |...
T Consensus 187 k~~~ef~~~e~~v~sle~hp~-e~Lla~Gs--~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~--G~q~ 259 (825)
T KOG0267|consen 187 KLSKEFKSHEGKVQSLEFHPL-EVLLAPGS--SDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLS--GEQI 259 (825)
T ss_pred ccccccccccccccccccCch-hhhhccCC--CCceeeeeccceeEEeeccCCccCCceeeeecCCceeeec--Cchh
Confidence 999999999999999999998 45888876 999999999999888877664 467999999999999888 6443
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.9e-22 Score=190.95 Aligned_cols=258 Identities=19% Similarity=0.239 Sum_probs=206.7
Q ss_pred CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEE
Q 011971 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLS 264 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~ 264 (474)
..|.+|.+......... .--.+.|.|++-+|+|.+|+.|+..|.|++|.+.+|.++..+..|-..|+|+.|+ +.+|+
T Consensus 61 p~l~vw~i~k~~~~~q~-~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~ii 139 (476)
T KOG0646|consen 61 PLLHVWEILKKDQVVQY-IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHII 139 (476)
T ss_pred ccccccccCchhhhhhh-cccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEE
Confidence 47889988765444322 1346899999999999999999999999999999999999999999999999997 58999
Q ss_pred EEeCCCcEEEEECcC--------CcceEeeecCcCCCEEEEEEecC--CCEEEEEeCCCcEEEEECCCCcceEEEccCCC
Q 011971 265 SGSRDKSILQRDIRA--------QEDFVSKLSGHKSEVCGLKWSYD--NRELASGGNDNRLFVWNQHSTQPVLKYCEHTA 334 (474)
Q Consensus 265 sgs~dg~I~iwd~~~--------~~~~~~~~~~h~~~V~~l~~spd--~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~ 334 (474)
+|+.||.|.+|++.. ...+...+..|.-.|+.+...+. ...|++++.|.++++||+..+..+.++ ....
T Consensus 140 TgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti-~fp~ 218 (476)
T KOG0646|consen 140 TGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI-TFPS 218 (476)
T ss_pred ecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE-ecCC
Confidence 999999999998642 12357788999999999998764 468999999999999999999988887 4577
Q ss_pred cEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc----------------eeeeec-CC--CCeEEEEEcCCCCeEEEE
Q 011971 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT----------------HLSCMD-TG--SQVCNLVWSKNVNELVST 395 (474)
Q Consensus 335 ~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~----------------~~~~~~-~~--~~v~~l~~s~~~~~l~~~ 395 (474)
.+++++.+|-+..+++ |+.+|+|.+.++.... .+..+. +. ++|+|++++-||..|++
T Consensus 219 si~av~lDpae~~~yi---Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS- 294 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYI---GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS- 294 (476)
T ss_pred cceeEEEcccccEEEe---cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe-
Confidence 8999999998875555 3489999998875432 111111 22 48999999999999999
Q ss_pred EecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEE-EeCCCcEEEEeCC
Q 011971 396 HGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVT-GAGDETLRFWNVF 451 (474)
Q Consensus 396 ~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t-~s~Dg~I~iW~l~ 451 (474)
|+.||+++|||+.+.++++++..-.++|+.+.+.|-.+.++. -...-.+-+|+++
T Consensus 295 -Gd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 295 -GDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred -eCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhh
Confidence 999999999999999999998877889999999664332332 2233344455544
No 128
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.6e-23 Score=208.43 Aligned_cols=244 Identities=22% Similarity=0.387 Sum_probs=216.6
Q ss_pred CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEE
Q 011971 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLS 264 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~ 264 (474)
-.+++|+.... ..|...|.|+..-..++.+++|+.|..+-+|.+...-.+..+.+|..+|-++.|+ ..+|+
T Consensus 14 t~Lr~~~~~~~-------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 14 TKLRVWDTREF-------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred eccccccchhh-------hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhc
Confidence 35566765321 2577888888887788999999999999999998888888899999999999998 47899
Q ss_pred EEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCC
Q 011971 265 SGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPH 344 (474)
Q Consensus 265 sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~ 344 (474)
+|+.+|+|++||+.... .+.++.+|...++++.|+|-+.++|.|+.|+.+++||.+...+.+.+.+|...|..+.|+|+
T Consensus 87 agsasgtiK~wDleeAk-~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~ 165 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAK-IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPD 165 (825)
T ss_pred ccccCCceeeeehhhhh-hhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCC
Confidence 99999999999999776 57899999999999999999999999999999999999988899999999999999999999
Q ss_pred CCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCcc
Q 011971 345 LHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFR 423 (474)
Q Consensus 345 ~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~ 423 (474)
|. +++.|+ +|..+++||+..|+.+.++. +...+..+.|+|..-.+.. |+.|+.+++||+++.+.+.........
T Consensus 166 Gr-~v~~g~--ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~--Gs~d~tv~f~dletfe~I~s~~~~~~~ 240 (825)
T KOG0267|consen 166 GR-WVASGG--EDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAP--GSSDRTVRFWDLETFEVISSGKPETDG 240 (825)
T ss_pred Cc-eeeccC--CcceeeeecccccccccccccccccccccccCchhhhhcc--CCCCceeeeeccceeEEeeccCCccCC
Confidence 97 666665 79999999999999999998 7788999999998877777 999999999999999999988888899
Q ss_pred EEEEEECCCCCEEEEEeCCC
Q 011971 424 VLYLAISPDGQTIVTGAGDE 443 (474)
Q Consensus 424 V~~l~~spdg~~l~t~s~Dg 443 (474)
|.+++|+|+|..+++|..+.
T Consensus 241 v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 241 VRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ceeeeecCCceeeecCchhh
Confidence 99999999999888876553
No 129
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=6.9e-22 Score=179.83 Aligned_cols=243 Identities=17% Similarity=0.312 Sum_probs=207.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEEC------
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDI------ 277 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~------ 277 (474)
+|.+.|..++.......+.+++.|.+-+||.+++++++.++.||.+.|+++.|+ +.++++++.|++..||..
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~v 225 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEV 225 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcC
Confidence 899999999988877889999999999999999999999999999999999998 478999999999999962
Q ss_pred cCC---------------------------------cceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011971 278 RAQ---------------------------------EDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (474)
Q Consensus 278 ~~~---------------------------------~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~ 324 (474)
... ..++..+.+|...|.+..|-..|+++++++.|.+..+||+++++
T Consensus 226 P~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge 305 (481)
T KOG0300|consen 226 PSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE 305 (481)
T ss_pred CCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc
Confidence 110 01355678999999999999999999999999999999999999
Q ss_pred ceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-eeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCe
Q 011971 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-HLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQ 402 (474)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~-~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~ 402 (474)
++..+.+|....+.++-+|.++ |+++.+ .|.+.++||++..- .+..+. +...|+++.|..+.+ +++ |+.|..
T Consensus 306 ~v~~LtGHd~ELtHcstHptQr-LVvTsS--rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVS--gSDDrT 379 (481)
T KOG0300|consen 306 VVNILTGHDSELTHCSTHPTQR-LVVTSS--RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVS--GSDDRT 379 (481)
T ss_pred eeccccCcchhccccccCCcce-EEEEec--cCceeEeccchhhcceeeeecccccceeEEEEecCCc-eee--cCCCce
Confidence 9999999999999999999977 666665 89999999998432 233333 566799999987765 455 889999
Q ss_pred EEEEECCCCc-eeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCC
Q 011971 403 IIVWRYPTMS-KLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 403 I~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
|+|||++++. ++.++. ...+++.++.+..+..|+.--.+..|++||+.....
T Consensus 380 vKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl 432 (481)
T KOG0300|consen 380 VKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL 432 (481)
T ss_pred EEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCcc
Confidence 9999999875 466665 466799999998888898888889999999987654
No 130
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4.1e-22 Score=188.88 Aligned_cols=233 Identities=20% Similarity=0.371 Sum_probs=187.8
Q ss_pred CcEEEEEc-CCeEEEEeCCCCC-EEEEE-------------------ecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEe
Q 011971 178 HNVLAVGL-GNCVYLWNACSSK-VTKLC-------------------DLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIW 235 (474)
Q Consensus 178 ~~~la~~~-d~~V~lwd~~~~~-~~~~~-------------------~~~~~~~V~~v~~sp~-g~~la~gs~dg~I~iw 235 (474)
+|++|+|. +..|.|||+.--. +...+ ..+|++.|.+++|+.. .+.||+|+.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 68999996 8899999975211 11111 1158888999999875 4689999999999999
Q ss_pred cCCCCeEEEEecCCCCcEEEEEec---CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCC-CEEEEEeC
Q 011971 236 DASRCKRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN-RELASGGN 311 (474)
Q Consensus 236 d~~~~~~~~~~~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~-~~lasg~~ 311 (474)
|+.++++..++..|...|.++.|+ +..|++|+.|++|.+.|.|.....-. .-...+.|..++|.|.. ..++++..
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~-~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK-EWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc-eEEeccceEEEEecCCCceeEEEecC
Confidence 999999999999999999999998 58999999999999999996443222 22346789999999854 56788889
Q ss_pred CCcEEEEECCCC-cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC---CCCeEEEEEcC
Q 011971 312 DNRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT---GSQVCNLVWSK 387 (474)
Q Consensus 312 Dg~v~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~---~~~v~~l~~s~ 387 (474)
||+|+-+|+|.. +++.+++.|...|.+|++++.-++++++++ .|+.+++|++..........+ -+..+|+++.|
T Consensus 351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s--~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~ 428 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS--TDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDP 428 (463)
T ss_pred CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc--ccceEEEEeecCCCCcccccccccccceeecccCC
Confidence 999999999975 899999999999999999999999999987 899999999875443222221 12378888899
Q ss_pred CCCeEEEEEecCCCeEEEEECCCCcee
Q 011971 388 NVNELVSTHGYSQNQIIVWRYPTMSKL 414 (474)
Q Consensus 388 ~~~~l~~~~g~~dg~I~iwd~~~~~~~ 414 (474)
+-..+++. |+..+.++|||+-+...+
T Consensus 429 ~~a~~la~-GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 429 DVAFTLAF-GGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CcceEEEe-cCccceEEEeecccChhH
Confidence 88887776 667789999998766543
No 131
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2e-21 Score=184.82 Aligned_cols=278 Identities=13% Similarity=0.234 Sum_probs=218.7
Q ss_pred cceeeeeCCC--CcEEEEEcCCeEEEEeCCCCCEE--EEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEecCCCCeE
Q 011971 168 FYLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVT--KLCDLGIDDSVCSVGWANRNT-HLAVGTSHGKVQIWDASRCKR 242 (474)
Q Consensus 168 ~~v~~l~~s~--~~~la~~~d~~V~lwd~~~~~~~--~~~~~~~~~~V~~v~~sp~g~-~la~gs~dg~I~iwd~~~~~~ 242 (474)
-.++++.|+| .-+|++|.|+.++||.+....-. +.+.+ ...+|.+.+|.|+|. .+++++....++.||+++.+.
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee-ccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 3589999999 45778888999999988654333 22322 267999999999998 888999999999999988765
Q ss_pred EE--EecCCCC-cEEEEEe--cCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 011971 243 VR--TMEGHRL-RVGALAW--SSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV 317 (474)
Q Consensus 243 ~~--~~~~h~~-~V~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~i 317 (474)
.. .+.++.. .+..... .+++|+..+..|.|.+....+.+ .+..++ ..+.|..++|+.|++.|++.+.+|.|++
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e-li~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE-LITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh-hhheee-eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 43 3334432 2333333 46899999999999999888776 444443 4577999999999999999999999999
Q ss_pred EECCCCcceEEEccCCC-cEEEEEECCCCCcEEEEecCCCCCeEEEEECCC------Cceeeeec-CCCCeEEEEEcCCC
Q 011971 318 WNQHSTQPVLKYCEHTA-AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT------NTHLSCMD-TGSQVCNLVWSKNV 389 (474)
Q Consensus 318 wd~~~~~~~~~~~~h~~-~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~------~~~~~~~~-~~~~v~~l~~s~~~ 389 (474)
||++...+++++....+ .-+.++.++++. ++|+|+ ..|.|.|||..+ .+++..+. ....|.+++|++++
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS--~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~ 447 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGS-YLATGS--DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA 447 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCc-eEEecc--CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch
Confidence 99999998888864222 335677778887 788876 899999999654 23444443 45679999999999
Q ss_pred CeEEEEEecCCCeEEEEECCCCceeEEEcCC---CccEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 011971 390 NELVSTHGYSQNQIIVWRYPTMSKLATLTGH---TFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 390 ~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h---~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
+.|+.++...++.+++-.+++......+... -+.|+||+|||.|.+|+.|..+|.+.+|.+.
T Consensus 448 qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 448 QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 9999987778899999999988877766543 3568999999999999999999999999975
No 132
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=6.1e-21 Score=173.29 Aligned_cols=245 Identities=16% Similarity=0.317 Sum_probs=189.7
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC----eEEEEecCCCCcEEEEEec----CCEEEEEeCCCcEEE
Q 011971 203 CDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC----KRVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQ 274 (474)
Q Consensus 203 ~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~~----~~~l~sgs~dg~I~i 274 (474)
+..+|.+-|.++.|.+.|+.+|+|+.|++|+|||..+. .+....+.|.+.|..+.|- ++.+++++.|+++.|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 34478899999999999999999999999999996543 4566678999999999996 589999999999999
Q ss_pred EECcCCc--------ceEeeecCcCCCEEEEEEec--CCCEEEEEeCCCcEEEEECCCC------cceEEEc-------c
Q 011971 275 RDIRAQE--------DFVSKLSGHKSEVCGLKWSY--DNRELASGGNDNRLFVWNQHST------QPVLKYC-------E 331 (474)
Q Consensus 275 wd~~~~~--------~~~~~~~~h~~~V~~l~~sp--d~~~lasg~~Dg~v~iwd~~~~------~~~~~~~-------~ 331 (474)
|.-.... ....++......|+.++|.| -|-.||+++.||.|+||+.-.. ...+++. .
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 9752111 12455677788999999999 4678999999999999986542 2233333 3
Q ss_pred CCCcEEEEEECCCC--CcEEEEecCCCC-----CeEEEEECCCCc-e---eeee-cCCCCeEEEEEcCCCC----eEEEE
Q 011971 332 HTAAVKAIAWSPHL--HGLLASGGGTAD-----RCIRFWNTTTNT-H---LSCM-DTGSQVCNLVWSKNVN----ELVST 395 (474)
Q Consensus 332 h~~~V~~l~~sp~~--~~ll~sg~Gt~d-----~~I~iwd~~~~~-~---~~~~-~~~~~v~~l~~s~~~~----~l~~~ 395 (474)
+.....|+.|+|.. ..+++.|+ .+ +.++||....+. . +.++ .+...|..++|.|+-. .|++
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs--~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv- 244 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGS--DEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV- 244 (361)
T ss_pred ccCcceEEeeccccccCceEEEEc--ccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE-
Confidence 56678899999742 34777775 22 378888765433 2 2222 4678899999999642 3444
Q ss_pred EecCCCeEEEEECCC--------------------CceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 396 HGYSQNQIIVWRYPT--------------------MSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 396 ~g~~dg~I~iwd~~~--------------------~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
++.|| |+||++.. -+.+..+.+|.+.|..+.|.-.|..|.+.|.||+||+|...-
T Consensus 245 -A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 245 -ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred -eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 77899 99999863 134666789999999999999999999999999999998654
No 133
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=1.4e-21 Score=185.70 Aligned_cols=279 Identities=18% Similarity=0.241 Sum_probs=210.9
Q ss_pred CcceeeeeCCC--C-cEEEEEc-CCeEEEEeCCCCC----EEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEecC
Q 011971 167 DFYLNLVDWSS--H-NVLAVGL-GNCVYLWNACSSK----VTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIWDA 237 (474)
Q Consensus 167 d~~v~~l~~s~--~-~~la~~~-d~~V~lwd~~~~~----~~~~~~~~~~~~V~~v~~sp~g-~~la~gs~dg~I~iwd~ 237 (474)
+-.+.++.|.| . +++++|. .|.|-+||+.+.+ .+.++ ..|..+|.+|.|+|.. ..+++.+.||+|++-|+
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-TPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-ccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 33589999998 2 5777775 6899999995322 12222 2789999999999954 68899999999999999
Q ss_pred CCCeEEEE--ecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCC-CEEEEEeCC
Q 011971 238 SRCKRVRT--MEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN-RELASGGND 312 (474)
Q Consensus 238 ~~~~~~~~--~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~-~~lasg~~D 312 (474)
+....-.. +......+..+.|+ ...++.|..=|...+||.++.......+.-|...|++++++|-. .+||+++.|
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D 344 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLD 344 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccC
Confidence 87653333 33344556667776 35566666667999999999887677788899999999999954 578999999
Q ss_pred CcEEEEECCCCc----ceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEEC----CCCceeeeecCCCC-----
Q 011971 313 NRLFVWNQHSTQ----PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT----TTNTHLSCMDTGSQ----- 379 (474)
Q Consensus 313 g~v~iwd~~~~~----~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~----~~~~~~~~~~~~~~----- 379 (474)
++++|||++... ++.....|...|.+..|+|.+..|+.++ .|..|+|||. .....+..+.|...
T Consensus 345 ~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~---~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rwl 421 (498)
T KOG4328|consen 345 QTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC---QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWL 421 (498)
T ss_pred cceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec---cCCceEEeecccccccCCccceeeccCcccccc
Confidence 999999998642 2334458999999999999999877666 7999999998 34455555555432
Q ss_pred -eEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCc-cEEE-EEECCCCCEEEE-EeCCCcEEEEeCC
Q 011971 380 -VCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTF-RVLY-LAISPDGQTIVT-GAGDETLRFWNVF 451 (474)
Q Consensus 380 -v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~-~V~~-l~~spdg~~l~t-~s~Dg~I~iW~l~ 451 (474)
.....|.|+..++++ |..-..|-|+|-..++.+.++..... .|.+ ..|+|-+..+++ ++..|.|++|--.
T Consensus 422 T~fKA~W~P~~~li~v--g~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 422 TPFKAAWDPDYNLIVV--GRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cchhheeCCCccEEEE--eccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 455789999999888 77888899999988888888754433 4544 479998774554 4566788887543
No 134
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=4.4e-20 Score=178.65 Aligned_cols=253 Identities=12% Similarity=0.076 Sum_probs=189.7
Q ss_pred eeeeeCCC-CcEE-EEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEecCCCCeEEEE
Q 011971 170 LNLVDWSS-HNVL-AVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVG-TSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 170 v~~l~~s~-~~~l-a~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~g-s~dg~I~iwd~~~~~~~~~ 245 (474)
+..++|++ +..+ +++ .++.|++||..+++....+.. ...+..++|+|+++.++++ ..++.|.+||+.+.+.+..
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS--GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE 110 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC--CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence 45678887 4433 444 578999999999888765542 2345788999999977665 4589999999999888777
Q ss_pred ecCCCCcEEEEEec--CCEEEEEeCCC-cEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEE-eCCCcEEEEECC
Q 011971 246 MEGHRLRVGALAWS--SSLLSSGSRDK-SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASG-GNDNRLFVWNQH 321 (474)
Q Consensus 246 ~~~h~~~V~~l~~~--~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg-~~Dg~v~iwd~~ 321 (474)
+.. ...+.+++|+ +..+++++.++ .+.+||..+... ..... ....+.+++|++++++|+++ ..++.|++||+.
T Consensus 111 ~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~ 187 (300)
T TIGR03866 111 IPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-VDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVA 187 (300)
T ss_pred eeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-EEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcC
Confidence 753 2346778887 46788887765 466779877652 22222 23346789999999988654 469999999999
Q ss_pred CCcceEEEccCC-------CcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEE
Q 011971 322 STQPVLKYCEHT-------AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS 394 (474)
Q Consensus 322 ~~~~~~~~~~h~-------~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 394 (474)
+++.+..+..+. .....++|+|+++.++++.+ .++.|.+||+.+++.+..+..+..+.++.|+|++++|++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 188 TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG--PANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLT 265 (300)
T ss_pred cceeeeeeeecccccccccCCccceEECCCCCEEEEEcC--CCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEE
Confidence 988766654221 12356889999997666554 467899999999988877766778999999999999987
Q ss_pred EEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECC
Q 011971 395 THGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISP 431 (474)
Q Consensus 395 ~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp 431 (474)
+ ...++.|.+||+.+++.+..+... ...+.++++|
T Consensus 266 ~-~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 266 T-NGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred E-cCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 4 346899999999999999998754 4558888865
No 135
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.9e-21 Score=177.12 Aligned_cols=224 Identities=21% Similarity=0.335 Sum_probs=184.8
Q ss_pred EEEEeCCCcEEEecCCC------------CeEEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCc
Q 011971 223 LAVGTSHGKVQIWDASR------------CKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGH 290 (474)
Q Consensus 223 la~gs~dg~I~iwd~~~------------~~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h 290 (474)
|++|+....|.-+++.- ...+..+..|.+.+++++.++.++++|+.|-+|+|||++...+ ...+..|
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~q-lg~ll~H 82 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQ-LGILLSH 82 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhh-hcceecc
Confidence 45666665555554321 1234556789999999999999999999999999999998774 6778889
Q ss_pred CCCEEEEEEecCCC--EEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011971 291 KSEVCGLKWSYDNR--ELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368 (474)
Q Consensus 291 ~~~V~~l~~spd~~--~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~ 368 (474)
.+.|+++.|.++-. +|++|+.||.|.+|+......+..++.|.+.|+.++.+|.++.-|+.| .|+.+++||+-.|
T Consensus 83 agsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg---~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 83 AGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVG---GDQVLRTWNLVRG 159 (362)
T ss_pred ccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEc---CCceeeeehhhcC
Confidence 99999999998765 999999999999999999999999999999999999999998444444 5999999999999
Q ss_pred ceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEE
Q 011971 369 THLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFW 448 (474)
Q Consensus 369 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW 448 (474)
+.-...........+.|+|.|.++++. ..+.|-||.+.+-....++.. ..++.++.|- ++..|++|+.|+.|++|
T Consensus 160 r~a~v~~L~~~at~v~w~~~Gd~F~v~---~~~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~ 234 (362)
T KOG0294|consen 160 RVAFVLNLKNKATLVSWSPQGDHFVVS---GRNKIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLK 234 (362)
T ss_pred ccceeeccCCcceeeEEcCCCCEEEEE---eccEEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEe
Confidence 888877777777779999999988883 467899999988766665543 3567777776 56689999999999999
Q ss_pred eCCCCCC
Q 011971 449 NVFPSPK 455 (474)
Q Consensus 449 ~l~~~~~ 455 (474)
|-+....
T Consensus 235 D~ds~~~ 241 (362)
T KOG0294|consen 235 DTDSDTP 241 (362)
T ss_pred ccCCCcc
Confidence 9986443
No 136
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=8.5e-22 Score=177.72 Aligned_cols=217 Identities=21% Similarity=0.323 Sum_probs=175.8
Q ss_pred CCCCCEEEEEEcC-CCCEEEEEeCCCcEEEecCCCCe----------EEEEe-----cCCCCcEEEEEecC---CEEEEE
Q 011971 206 GIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCK----------RVRTM-----EGHRLRVGALAWSS---SLLSSG 266 (474)
Q Consensus 206 ~~~~~V~~v~~sp-~g~~la~gs~dg~I~iwd~~~~~----------~~~~~-----~~h~~~V~~l~~~~---~~l~sg 266 (474)
.|.+.|.++...+ .|+|+++|+.||.|.|||++... .+..+ .+|.-.|.++.|-| ..+.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 5789999999987 68999999999999999997532 11111 36888999999975 799999
Q ss_pred eCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec---CCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECC
Q 011971 267 SRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY---DNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP 343 (474)
Q Consensus 267 s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp---d~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp 343 (474)
+.|.++++||..+.+. ...+ ...+.|++-+|+| ..-++|+|..|-.|++.|+.+|...+.+.+|...|.++.|+|
T Consensus 121 SFDhtlKVWDtnTlQ~-a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQE-AVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred cccceEEEeeccccee-eEEe-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999988763 3333 3456788888888 345788899999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce---eEEEcCC
Q 011971 344 HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK---LATLTGH 420 (474)
Q Consensus 344 ~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~---~~~l~~h 420 (474)
...++|++|+ .||.|++||++... |.+++.|..+.+. +..-..|
T Consensus 199 ~~e~vLatgs--aDg~irlWDiRras-------------------------------gcf~~lD~hn~k~~p~~~~n~ah 245 (397)
T KOG4283|consen 199 SSEWVLATGS--ADGAIRLWDIRRAS-------------------------------GCFRVLDQHNTKRPPILKTNTAH 245 (397)
T ss_pred CceeEEEecC--CCceEEEEEeeccc-------------------------------ceeEEeecccCccCccccccccc
Confidence 9999999987 99999999997531 2223333332222 2223479
Q ss_pred CccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 011971 421 TFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 421 ~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~ 457 (474)
.+.|..++|+.||.++++++.|..+++|+...+....
T Consensus 246 ~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl 282 (397)
T KOG4283|consen 246 YGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTL 282 (397)
T ss_pred cceeeeeeecccchhhhhccCccceEEeecccCcccc
Confidence 9999999999999999999999999999999876543
No 137
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=5.5e-20 Score=176.72 Aligned_cols=278 Identities=17% Similarity=0.253 Sum_probs=219.7
Q ss_pred CCcceeeeeCCC---CcEEEEEcC---CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCC
Q 011971 166 DDFYLNLVDWSS---HNVLAVGLG---NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR 239 (474)
Q Consensus 166 ~d~~v~~l~~s~---~~~la~~~d---~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~ 239 (474)
-+.-+.|++|++ +.++.+-.+ ..+.+||...+....-.. ..++.|....|+|.+..|++....|.+..|+.+.
T Consensus 153 f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk-~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~ 231 (626)
T KOG2106|consen 153 FDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVK-TSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG 231 (626)
T ss_pred ccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcce-eccceEEEEEeccCCCcEEEEeCCceEEEEEccC
Confidence 345689999997 556555443 478899998766544443 3467899999999877677777789999999998
Q ss_pred CeEEEE---ecCC-CCcEEEEEecC-CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCc
Q 011971 240 CKRVRT---MEGH-RLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNR 314 (474)
Q Consensus 240 ~~~~~~---~~~h-~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~ 314 (474)
+...+. ++.+ ..-|.|++|.+ .-+++|..+|.|.||+..+.. ..+....|.+.|.+|+.-.+|.+|- |+.|..
T Consensus 232 ~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~-~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRk 309 (626)
T KOG2106|consen 232 GSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNR-ISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRK 309 (626)
T ss_pred CceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCce-EEeEeeecCCceEEEEEecCccEee-cCccce
Confidence 766554 3332 36799999985 689999999999999997766 4444559999999999999986555 999999
Q ss_pred EEEEECCCCc-----------c-----------------------------eEEEccCCCcEEEEEECCCCCcEEEEecC
Q 011971 315 LFVWNQHSTQ-----------P-----------------------------VLKYCEHTAAVKAIAWSPHLHGLLASGGG 354 (474)
Q Consensus 315 v~iwd~~~~~-----------~-----------------------------~~~~~~h~~~V~~l~~sp~~~~ll~sg~G 354 (474)
|..||-.-.+ . .....+|......++.+|+...++.+|
T Consensus 310 i~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~g-- 387 (626)
T KOG2106|consen 310 IILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCG-- 387 (626)
T ss_pred EEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeecc--
Confidence 9999931100 0 011235777888999999977555544
Q ss_pred CCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCC
Q 011971 355 TADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQ 434 (474)
Q Consensus 355 t~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 434 (474)
.|+.+++|+ ..+.+.......++.++.|+|.| .+++ |...|...+.|.++...+..-.. ..++..++|+|+|.
T Consensus 388 -qdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~--Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~ 460 (626)
T KOG2106|consen 388 -QDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAV--GTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGA 460 (626)
T ss_pred -CcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEE--eeccceEEEEecccceeEEEEec-CCceEEEEEcCCCC
Confidence 899999999 67777888889999999999999 7777 99999999999999665555444 88999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCCC
Q 011971 435 TIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 435 ~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
+||.|+.|+.|++|.+.....
T Consensus 461 ~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 461 FLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred EEEEecCCCeEEEEEECCCCc
Confidence 999999999999999987654
No 138
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=1.1e-21 Score=178.07 Aligned_cols=234 Identities=18% Similarity=0.301 Sum_probs=189.2
Q ss_pred eeeeeCCC-CcEEEEE-cCCeEEEEeCCCCCEEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEe
Q 011971 170 LNLVDWSS-HNVLAVG-LGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (474)
Q Consensus 170 v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~ 246 (474)
|++++|+| ..+|+.| .|++|+++|...-...+.++. ....+|.+|.|+|.|.+|++|+...++++||+++.++...-
T Consensus 175 vn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 175 VNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred ccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec
Confidence 89999999 5666665 589999999976554443332 45679999999999999999999999999999998876554
Q ss_pred ---cCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeee-cCcC-CCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011971 247 ---EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKL-SGHK-SEVCGLKWSYDNRELASGGNDNRLFVWN 319 (474)
Q Consensus 247 ---~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~h~-~~V~~l~~spd~~~lasg~~Dg~v~iwd 319 (474)
..|++.|+++.++ +++.++|+.||.|++||--... ++.++ ..|. .+||+..|..+++++++.|.|..|++|.
T Consensus 255 nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r-Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWE 333 (430)
T KOG0640|consen 255 NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR-CVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWE 333 (430)
T ss_pred CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH-HHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeee
Confidence 3699999999998 5899999999999999987766 44443 4554 5799999999999999999999999999
Q ss_pred CCCCcceEEEccCC-----CcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee--eecCCCCeEEEEEcCCCCeE
Q 011971 320 QHSTQPVLKYCEHT-----AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS--CMDTGSQVCNLVWSKNVNEL 392 (474)
Q Consensus 320 ~~~~~~~~~~~~h~-----~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~--~~~~~~~v~~l~~s~~~~~l 392 (474)
+.+++.+.++.+-. .--+...|.....++|.-.- ..+.+.-||.+++..+. .+.|.+.+..+.-+|.+..+
T Consensus 334 i~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE--as~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~F 411 (430)
T KOG0640|consen 334 ISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE--ASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAF 411 (430)
T ss_pred ecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccc--ccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCce
Confidence 99999998886531 11233445555565665433 56789999999876554 45588899999999999999
Q ss_pred EEEEecCCCeEEEEEC
Q 011971 393 VSTHGYSQNQIIVWRY 408 (474)
Q Consensus 393 ~~~~g~~dg~I~iwd~ 408 (474)
++ ++.|-.+++|--
T Consensus 412 mT--csdD~raRFWyr 425 (430)
T KOG0640|consen 412 MT--CSDDFRARFWYR 425 (430)
T ss_pred ee--ecccceeeeeee
Confidence 99 789999999964
No 139
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=3.6e-21 Score=184.33 Aligned_cols=269 Identities=17% Similarity=0.237 Sum_probs=211.6
Q ss_pred CcEEEEEcCCeEEEEeCCCCCEEEEEec-CCCCCEEEEEEcCCCCEEEEEe--CCCcEEEecCCCC----eEEEEecCCC
Q 011971 178 HNVLAVGLGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGT--SHGKVQIWDASRC----KRVRTMEGHR 250 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~gs--~dg~I~iwd~~~~----~~~~~~~~h~ 250 (474)
.++.+++.+..++|||+...+....+.. ...-.+.+++|..... |++++ .|..|++|.-... ..+....+.
T Consensus 3 eNl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd- 80 (673)
T KOG4378|consen 3 ENLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD- 80 (673)
T ss_pred cceeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc-
Confidence 3678888899999999986655443321 1233599999997654 55554 4667889974432 122333333
Q ss_pred CcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEE
Q 011971 251 LRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK 328 (474)
Q Consensus 251 ~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~ 328 (474)
.-.|++.. .-++++|+..+.|+|||++. +.+...+.+|+..|+++.++....+||+++..|.|.|..+.++.....
T Consensus 81 -~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~ 158 (673)
T KOG4378|consen 81 -NAFCVACASQSLYEISGGQSGCVKIWDLRA-KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTT 158 (673)
T ss_pred -hHHHHhhhhcceeeeccCcCceeeehhhHH-HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccc
Confidence 22333332 47899999999999999994 446788999999999999999999999999999999999999988888
Q ss_pred EccC-CCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--CCCCeEEEEEcCCCCeEEEEEecCCCeEEE
Q 011971 329 YCEH-TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIV 405 (474)
Q Consensus 329 ~~~h-~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~i 405 (474)
|... ...|.-+.|+|..+.+|.+++ .+|.|.+||+....++..+. |..+...++|+|....|+++.| .|..|.+
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~as--d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG-~Dkki~~ 235 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIAS--DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG-YDKKINI 235 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeec--cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec-ccceEEE
Confidence 8654 345669999999999999987 89999999999887776654 6778889999998888777645 7999999
Q ss_pred EECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 406 WRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 406 wd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
||..+......+. ...+...++|+++|.+|+.|...|.|.+||+...+
T Consensus 236 yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 236 YDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred eecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 9999777666654 35578899999999999999999999999998654
No 140
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=4.9e-21 Score=178.08 Aligned_cols=215 Identities=26% Similarity=0.503 Sum_probs=167.0
Q ss_pred cEEEEE--cCCeEEEEeCCCC--------------CEEEEEec-CCCCCEEEEEEcCCC-CEEEEEeCCCcEEEecCCCC
Q 011971 179 NVLAVG--LGNCVYLWNACSS--------------KVTKLCDL-GIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRC 240 (474)
Q Consensus 179 ~~la~~--~d~~V~lwd~~~~--------------~~~~~~~~-~~~~~V~~v~~sp~g-~~la~gs~dg~I~iwd~~~~ 240 (474)
..++++ ..|.|+||++... +...++.+ +|...=..++|||-. ..|++|..-+.|++|...++
T Consensus 165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g 244 (440)
T KOG0302|consen 165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG 244 (440)
T ss_pred cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccC
Confidence 344444 3589999997521 11222333 788888999999933 24788888889999999887
Q ss_pred eEE---EEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCc-ceEeeecCcCCCEEEEEEecCCCEEEEEeCCC
Q 011971 241 KRV---RTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQE-DFVSKLSGHKSEVCGLKWSYDNRELASGGNDN 313 (474)
Q Consensus 241 ~~~---~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg 313 (474)
.-. ..+.+|+..|-.|+|++ ..|++|+.||+|+|||+|... ......+.|.+.|+.|.|+.+..+||+|+.||
T Consensus 245 ~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdG 324 (440)
T KOG0302|consen 245 SWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDG 324 (440)
T ss_pred ceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCc
Confidence 543 33568999999999985 799999999999999999873 23444589999999999999888999999999
Q ss_pred cEEEEECCC---CcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-------------------e
Q 011971 314 RLFVWNQHS---TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH-------------------L 371 (474)
Q Consensus 314 ~v~iwd~~~---~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~-------------------~ 371 (474)
+++|||+++ ++++..|+.|..+|++|.|+|.....++++| .|..|.+||+....- +
T Consensus 325 t~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg--~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLL 402 (440)
T KOG0302|consen 325 TLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG--EDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLL 402 (440)
T ss_pred eEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc--CCCcEEEEEeeccCChhhhccccccchhcCCceeE
Confidence 999999985 5788999999999999999999888888876 899999999864221 1
Q ss_pred eeecCCCCeEEEEEcCCCCeEEEE
Q 011971 372 SCMDTGSQVCNLVWSKNVNELVST 395 (474)
Q Consensus 372 ~~~~~~~~v~~l~~s~~~~~l~~~ 395 (474)
........+..+.|+++-.-++++
T Consensus 403 FVHqGQke~KevhWH~QiPG~lvs 426 (440)
T KOG0302|consen 403 FVHQGQKEVKEVHWHRQIPGLLVS 426 (440)
T ss_pred EEecchhHhhhheeccCCCCeEEE
Confidence 111233457788888877666654
No 141
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=6.8e-21 Score=174.35 Aligned_cols=266 Identities=22% Similarity=0.339 Sum_probs=202.6
Q ss_pred CcEEEEEcCCeEEEEeCCCCCEEEEEec----CCCCCEEEEEEcCC----CCEEEEEeCCCcEEEecCCCCeEEEEecCC
Q 011971 178 HNVLAVGLGNCVYLWNACSSKVTKLCDL----GIDDSVCSVGWANR----NTHLAVGTSHGKVQIWDASRCKRVRTMEGH 249 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~~~~~~~~~~----~~~~~V~~v~~sp~----g~~la~gs~dg~I~iwd~~~~~~~~~~~~h 249 (474)
..++|....+.|.+|+....-...++.. .+.+....++|+-+ ..+||+|+.-|.|+|.|+.+++....+.+|
T Consensus 55 ~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~gh 134 (385)
T KOG1034|consen 55 PQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGH 134 (385)
T ss_pred CceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceecc
Confidence 4677778888999998765443333322 46778888999864 348999999999999999999999999999
Q ss_pred CCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEee---ecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011971 250 RLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSK---LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (474)
Q Consensus 250 ~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~---~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~ 323 (474)
...|+.+.+.+ +++++++.|..|++|++++.. ++.. +.+|..+|.++.|+.+|.+|+++|.|.+|++|++...
T Consensus 135 G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~-Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 135 GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV-CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred CccchhhhcCCCCCcEEEEecCCceEEEEeccCCe-EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 99999999984 799999999999999999877 4444 4679999999999999999999999999999998732
Q ss_pred cc-------------------------eE---EEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEEC-CCCcee---
Q 011971 324 QP-------------------------VL---KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT-TTNTHL--- 371 (474)
Q Consensus 324 ~~-------------------------~~---~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~-~~~~~~--- 371 (474)
+. .. +-.-|...|-|+.|-- . ++++-+ -++.|..|-. +-++.+
T Consensus 214 ~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d-~ilSks--cenaI~~w~pgkl~e~~~~v 288 (385)
T KOG1034|consen 214 EFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--D-FILSKS--CENAIVCWKPGKLEESIHNV 288 (385)
T ss_pred HHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--h-heeecc--cCceEEEEecchhhhhhhcc
Confidence 10 00 1124777888888875 3 455543 4789999987 222221
Q ss_pred ----------eeecC-CCCeEEE--EEcCCCCeEEEEEecCCCeEEEEECCCCcee--EEEc--CCCccEEEEEECCCCC
Q 011971 372 ----------SCMDT-GSQVCNL--VWSKNVNELVSTHGYSQNQIIVWRYPTMSKL--ATLT--GHTFRVLYLAISPDGQ 434 (474)
Q Consensus 372 ----------~~~~~-~~~v~~l--~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~--~~l~--~h~~~V~~l~~spdg~ 434 (474)
.+++. ...++-+ +|.+-++.|+. |...|.|.+||+...++. .++. .....|.+.+||.||.
T Consensus 289 kp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~--gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 289 KPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL--GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS 366 (385)
T ss_pred CCCccceeeeeEeccCccceEEEEEeecHHHHHHhh--ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence 22221 2234444 45667788888 999999999999876552 2222 2245799999999999
Q ss_pred EEEEEeCCCcEEEEeCC
Q 011971 435 TIVTGAGDETLRFWNVF 451 (474)
Q Consensus 435 ~l~t~s~Dg~I~iW~l~ 451 (474)
+|+..+.|++|.-||.-
T Consensus 367 ~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 367 ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEEeCCCcEEEEEee
Confidence 99999999999999853
No 142
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=1.5e-20 Score=186.81 Aligned_cols=283 Identities=18% Similarity=0.319 Sum_probs=216.1
Q ss_pred eeeeeCCC--CcEEEEEcCCeEEEEeCCCCCEEEEEe--cCCCCCEEEEEEcCC-----------CCEEEEEeCCCcEEE
Q 011971 170 LNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCD--LGIDDSVCSVGWANR-----------NTHLAVGTSHGKVQI 234 (474)
Q Consensus 170 v~~l~~s~--~~~la~~~d~~V~lwd~~~~~~~~~~~--~~~~~~V~~v~~sp~-----------g~~la~gs~dg~I~i 234 (474)
.-.+.|++ +.+..+-.|..+||||+..-+.+..+. +-|...|+.|.--|- ...+++++.||+|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 44566776 556666778999999997643322211 257777887766551 125889999999999
Q ss_pred ecCCCCeEEEEe-------------------------------------cCCCCcEEEEEec--CCEEEEEeCCCcEEEE
Q 011971 235 WDASRCKRVRTM-------------------------------------EGHRLRVGALAWS--SSLLSSGSRDKSILQR 275 (474)
Q Consensus 235 wd~~~~~~~~~~-------------------------------------~~h~~~V~~l~~~--~~~l~sgs~dg~I~iw 275 (474)
||++.+..-..+ -+....+.+++.+ +.+|++|.+-|++++|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 998752110000 0123457788887 4799999999999999
Q ss_pred ECcCCcceEeeecCcCCCEEEEEEec---CCCEEEEEeCCCcEEEEECCC-CcceEEEccCCCcEEEEEECCCC--CcEE
Q 011971 276 DIRAQEDFVSKLSGHKSEVCGLKWSY---DNRELASGGNDNRLFVWNQHS-TQPVLKYCEHTAAVKAIAWSPHL--HGLL 349 (474)
Q Consensus 276 d~~~~~~~~~~~~~h~~~V~~l~~sp---d~~~lasg~~Dg~v~iwd~~~-~~~~~~~~~h~~~V~~l~~sp~~--~~ll 349 (474)
|+..-+ ....+.+|..+|.||.++. ..++||+++.|..|+|||+.. ..+++++.+|...|+++.|.-.| ..++
T Consensus 487 ~Lq~l~-~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi 565 (1080)
T KOG1408|consen 487 DLQELE-YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI 565 (1080)
T ss_pred Eehhhh-hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE
Confidence 998766 5677889999999999985 357899999999999999864 46778899999999999998766 3445
Q ss_pred EEecCCCCCeEEEEECCC---Cceeeeec---CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcC---C
Q 011971 350 ASGGGTADRCIRFWNTTT---NTHLSCMD---TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTG---H 420 (474)
Q Consensus 350 ~sg~Gt~d~~I~iwd~~~---~~~~~~~~---~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~---h 420 (474)
.+| .|+.|.|--.+. |....... ....+..++..|..+++++ ++.|..|+||++.+++....|++ |
T Consensus 566 scG---ADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t--~cQDrnirif~i~sgKq~k~FKgs~~~ 640 (1080)
T KOG1408|consen 566 SCG---ADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT--VCQDRNIRIFDIESGKQVKSFKGSRDH 640 (1080)
T ss_pred ecc---CchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEE--EecccceEEEeccccceeeeecccccC
Confidence 444 788876543321 22221111 2345889999999999999 78999999999999999999985 6
Q ss_pred CccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 011971 421 TFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQN 458 (474)
Q Consensus 421 ~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~ 458 (474)
.+....+...|.|.||++.+.|.+|.|+|+..++....
T Consensus 641 eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 641 EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 77888999999999999999999999999999887654
No 143
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=8.6e-21 Score=176.48 Aligned_cols=204 Identities=23% Similarity=0.388 Sum_probs=167.0
Q ss_pred CCCCcEEEEEec----CCEEEEEeCCCcEEEEECcC---------------CcceEeeecCcCCCEEEEEEecC-CCEEE
Q 011971 248 GHRLRVGALAWS----SSLLSSGSRDKSILQRDIRA---------------QEDFVSKLSGHKSEVCGLKWSYD-NRELA 307 (474)
Q Consensus 248 ~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~---------------~~~~~~~~~~h~~~V~~l~~spd-~~~la 307 (474)
.|.+.++.+.-. ..+.++-+..|.|.|||+.. ...++.++.+|..+=++|+|||- ...|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 344444444332 35677778889999999753 12357788899999999999993 33588
Q ss_pred EEeCCCcEEEEECCCCcce---EEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC---ceeeeecCCCCeE
Q 011971 308 SGGNDNRLFVWNQHSTQPV---LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN---THLSCMDTGSQVC 381 (474)
Q Consensus 308 sg~~Dg~v~iwd~~~~~~~---~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~---~~~~~~~~~~~v~ 381 (474)
+|..-+.|++|...++.-. .-|.+|...|..++|+|....+|++|+ .|+.|+|||++.+ .++..-.+++.|.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS--~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCS--CDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeee--cCceEEEEEecCCCccceeEeeccCCcee
Confidence 8888899999998886432 235579999999999999999999997 8999999999998 4555666888999
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCC---CceeEEEcCCCccEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCC
Q 011971 382 NLVWSKNVNELVSTHGYSQNQIIVWRYPT---MSKLATLTGHTFRVLYLAISP-DGQTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 382 ~l~~s~~~~~l~~~~g~~dg~I~iwd~~~---~~~~~~l~~h~~~V~~l~~sp-dg~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
.+.|+.....|++ |..+|.++|||++. ++++++++-|..+|+++.|+| +...|++++.|.+|.+||+.-..-
T Consensus 307 VISWnr~~~lLas--G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 307 VISWNRREPLLAS--GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred eEEccCCcceeee--cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 9999999987777 99999999999974 578999999999999999999 455788889999999999986544
No 144
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.1e-21 Score=204.85 Aligned_cols=244 Identities=22% Similarity=0.398 Sum_probs=194.5
Q ss_pred CCCCcceeeeeCCC--C---cEEEEEc-CCeEEEEeCCC---CCE---EEEEecCCCCCEEEEEEcCCC-CEEEEEeCCC
Q 011971 164 LQDDFYLNLVDWSS--H---NVLAVGL-GNCVYLWNACS---SKV---TKLCDLGIDDSVCSVGWANRN-THLAVGTSHG 230 (474)
Q Consensus 164 ~~~d~~v~~l~~s~--~---~~la~~~-d~~V~lwd~~~---~~~---~~~~~~~~~~~V~~v~~sp~g-~~la~gs~dg 230 (474)
++.+...+.++|.+ . .+|++|. ||.|.+||... +.- +..+. .|.+.|..+.|++.. ++||+|+.||
T Consensus 61 ~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 61 LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred ccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCceeeccCCCC
Confidence 45566788999986 2 3677775 78999999865 222 12222 689999999999965 5999999999
Q ss_pred cEEEecCCCCeEEEEec--CCCCcEEEEEec---CCEEEEEeCCCcEEEEECcCCcceEeeecCcC--CCEEEEEEecCC
Q 011971 231 KVQIWDASRCKRVRTME--GHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK--SEVCGLKWSYDN 303 (474)
Q Consensus 231 ~I~iwd~~~~~~~~~~~--~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~--~~V~~l~~spd~ 303 (474)
.|.|||+.+.+.-.... .....|.+++|| .++|++++.+|.+.|||++..+. +..+..|. ..+..|+|+|++
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~p-ii~ls~~~~~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKP-IIKLSDTPGRMHCSVLAWHPDH 218 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCc-ccccccCCCccceeeeeeCCCC
Confidence 99999998765444442 256789999999 48999999999999999998863 44454443 357899999976
Q ss_pred -CEEEEEeCCC---cEEEEECCCC-cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-C
Q 011971 304 -RELASGGNDN---RLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-G 377 (474)
Q Consensus 304 -~~lasg~~Dg---~v~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~-~ 377 (474)
..|+++++|. .|.+||+|.. .+++++..|...|.++.|++.+..++++++ .|+.|.+||.++++.+..+.. +
T Consensus 219 aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg--kD~~ii~wN~~tgEvl~~~p~~~ 296 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG--KDNRIICWNPNTGEVLGELPAQG 296 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc--CCCCeeEecCCCceEeeecCCCC
Confidence 4567776654 5999999864 567788899999999999999977888876 899999999999999999985 5
Q ss_pred CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc
Q 011971 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS 412 (474)
Q Consensus 378 ~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~ 412 (474)
..+..+.|+|....++++ .+-||.|.||.+....
T Consensus 297 nW~fdv~w~pr~P~~~A~-asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAA-ASFDGKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeecCCCcchhhh-heeccceeeeeeecCC
Confidence 669999999988755554 6789999999987543
No 145
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2e-19 Score=178.51 Aligned_cols=241 Identities=19% Similarity=0.363 Sum_probs=202.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe-EEEEecC-CCCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcceE
Q 011971 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK-RVRTMEG-HRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFV 284 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~-~~~~~~~-h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~ 284 (474)
...|++++++.+.+.||++-.+|.|.||++...= +...+.+ ....|.+++|. +..|++.+.+|.|.-||+.+.+ ..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk-~~ 103 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLK-QK 103 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCc-ee
Confidence 5789999999999999999999999999998753 3344554 45689999999 7899999999999999999887 46
Q ss_pred eeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEE--EccCCCcEEEEEECCCCCcEEEEecCCCCCeEEE
Q 011971 285 SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK--YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (474)
Q Consensus 285 ~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~i 362 (474)
..+....+.|++++.+|.+..++.|+.||.++.++...++..+. +....+.|.+++|+|++..+ ++| +.||.|++
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i-~~G--s~Dg~Iri 180 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKI-AGG--SIDGVIRI 180 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEE-Eec--ccCceEEE
Confidence 67778889999999999999999999999888888877765443 33456899999999998744 444 48999999
Q ss_pred EECCCCceeeeec-----CC----CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCC
Q 011971 363 WNTTTNTHLSCMD-----TG----SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDG 433 (474)
Q Consensus 363 wd~~~~~~~~~~~-----~~----~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 433 (474)
||..++..+..+. .. .-|+++.|-.++ .|++ |.+.|.|.+||...+..+..+..|.+.|.+|+..+++
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~s--gDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~ 257 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIAS--GDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNE 257 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEE--ecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCC
Confidence 9999998877332 11 126777777444 4666 8999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCC
Q 011971 434 QTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 434 ~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
.++++++.|+.|.-+...+...
T Consensus 258 d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 258 DRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred CeEEEccCCCceEEEEecCCcc
Confidence 9999999999999998887754
No 146
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.2e-21 Score=202.71 Aligned_cols=250 Identities=20% Similarity=0.387 Sum_probs=202.3
Q ss_pred CCCCCEEEEEEcCCCCE----EEEEeCCCcEEEecCCCC------eEEEEecCCCCcEEEEEec---CCEEEEEeCCCcE
Q 011971 206 GIDDSVCSVGWANRNTH----LAVGTSHGKVQIWDASRC------KRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSI 272 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~----la~gs~dg~I~iwd~~~~------~~~~~~~~h~~~V~~l~~~---~~~l~sgs~dg~I 272 (474)
........++|.+.|.. ||.|..||.|.+||...- ..+.+...|.+.|..+.|+ +++|++|+.||.|
T Consensus 62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI 141 (1049)
T KOG0307|consen 62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEI 141 (1049)
T ss_pred cccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcE
Confidence 44678899999998765 888999999999998652 3456677899999999998 4799999999999
Q ss_pred EEEECcCCcceEee-ecCcCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCcceEEEccCCC--cEEEEEECCCCCcE
Q 011971 273 LQRDIRAQEDFVSK-LSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLKYCEHTA--AVKAIAWSPHLHGL 348 (474)
Q Consensus 273 ~iwd~~~~~~~~~~-~~~h~~~V~~l~~spd-~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~--~V~~l~~sp~~~~l 348 (474)
.|||+...+..... -....++|.+|+|+.. ...|++++.+|.+.|||++..+++..+..+.. .+..++|+|+...-
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence 99999886543322 2235678999999874 45788999999999999999999888877655 57899999998766
Q ss_pred EEEecC-CCCCeEEEEECCCC-ceeeee-cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEE
Q 011971 349 LASGGG-TADRCIRFWNTTTN-THLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVL 425 (474)
Q Consensus 349 l~sg~G-t~d~~I~iwd~~~~-~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~ 425 (474)
++++++ ...-.|.+||++.. ..++.+ .|...|.++.|++.+..++.+ ...|++|.+|+..+++.+.++......+.
T Consensus 222 l~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllS-sgkD~~ii~wN~~tgEvl~~~p~~~nW~f 300 (1049)
T KOG0307|consen 222 LLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLS-SGKDNRIICWNPNTGEVLGELPAQGNWCF 300 (1049)
T ss_pred eeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhc-ccCCCCeeEecCCCceEeeecCCCCccee
Confidence 655542 12346999998864 345555 367789999999988555554 55999999999999999999998888999
Q ss_pred EEEECCCCC-EEEEEeCCCcEEEEeCCCCCCC
Q 011971 426 YLAISPDGQ-TIVTGAGDETLRFWNVFPSPKS 456 (474)
Q Consensus 426 ~l~~spdg~-~l~t~s~Dg~I~iW~l~~~~~~ 456 (474)
.+.|+|... .++.++-||.|-|+.+......
T Consensus 301 dv~w~pr~P~~~A~asfdgkI~I~sl~~~~~~ 332 (1049)
T KOG0307|consen 301 DVQWCPRNPSVMAAASFDGKISIYSLQGTDTD 332 (1049)
T ss_pred eeeecCCCcchhhhheeccceeeeeeecCCcc
Confidence 999999554 7888999999999999877643
No 147
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.86 E-value=4.9e-20 Score=181.96 Aligned_cols=272 Identities=18% Similarity=0.294 Sum_probs=214.8
Q ss_pred ceeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec
Q 011971 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~ 247 (474)
.++.++|.| +.-|..+.++.+++||...|...+.+. +|.+.|.|++|+.||+.+|+|+.|..|.||.-.- ...++
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLK-gHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLK-GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILK 89 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccc-cccceEEEEEEccCCceeccCCCceeEEEecccc---cceee
Confidence 577888988 677888888999999999999888876 8999999999999999999999999999997432 22232
Q ss_pred -CCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011971 248 -GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (474)
Q Consensus 248 -~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~ 324 (474)
.|...|.||.|+| +.|++++-. ..-+|...... +.. ......|++.+|..||++|+.|-.+|+|.|-+-. ++
T Consensus 90 YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~--V~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gE 164 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS--VSK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GE 164 (1081)
T ss_pred eccCCeeeEeecCchHHHhhhcchh-hccccChhhhh--HHh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CC
Confidence 5999999999996 677776654 35567655433 221 1234678999999999999999999999998653 44
Q ss_pred ceEEEc---cCCCcEEEEEECCCCC----cEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEe
Q 011971 325 PVLKYC---EHTAAVKAIAWSPHLH----GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHG 397 (474)
Q Consensus 325 ~~~~~~---~h~~~V~~l~~sp~~~----~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g 397 (474)
+...+. +.+.+|.+++|+|... .+++... ...++.+|.+.....-..-..+-..+|+.+.++|.++++ |
T Consensus 165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D--W~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~Li--G 240 (1081)
T KOG1538|consen 165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD--WGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILL--G 240 (1081)
T ss_pred cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe--ccceeEEEEecceeecccccCCCCchhheeccCCcEEEE--c
Confidence 444443 3778999999999642 3455443 667788887654333234456677899999999999999 9
Q ss_pred cCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 398 YSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 398 ~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
+.|+.+.+|- +.|-.+.++......|+.++..|++++++.|+.||+|.-|++-...
T Consensus 241 Gsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 241 GSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred cCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhH
Confidence 9999999996 4677777777778899999999999999999999999999986543
No 148
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=2.9e-19 Score=177.63 Aligned_cols=276 Identities=20% Similarity=0.356 Sum_probs=209.6
Q ss_pred eeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCC---EEEEEeCCCcEEEecCCCC--eEEE
Q 011971 170 LNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNT---HLAVGTSHGKVQIWDASRC--KRVR 244 (474)
Q Consensus 170 v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~---~la~gs~dg~I~iwd~~~~--~~~~ 244 (474)
.+..+|.+..+++.|.+..|.+||.....+.... -+|...|+|+.|-|..+ ++++|+.||.|.+|.++.. .++.
T Consensus 17 ~~v~sw~~~~~vafGa~~~Iav~dp~k~~i~t~l-~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~ 95 (764)
T KOG1063|consen 17 PKVSSWGPGGLVAFGAGPAIAVADPEKILIVTTL-DGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIY 95 (764)
T ss_pred cccccccccceEEecCCceEEEeCcccceeEEec-cCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEE
Confidence 4556788899999999999999998876444443 39999999999999877 8999999999999999843 3455
Q ss_pred EecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCc-------------------------------------------
Q 011971 245 TMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQE------------------------------------------- 281 (474)
Q Consensus 245 ~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~------------------------------------------- 281 (474)
.+.+|...+.|+.-......+.+.|+.+.+||....+
T Consensus 96 ~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s 175 (764)
T KOG1063|consen 96 TIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYS 175 (764)
T ss_pred eecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEec
Confidence 6667766666655444444445789999999884322
Q ss_pred ------ceEeeecCcCCCEEEEEEecCC---CEEEEEeCCCcEEEEECCCCc-----------------c----eEE---
Q 011971 282 ------DFVSKLSGHKSEVCGLKWSYDN---RELASGGNDNRLFVWNQHSTQ-----------------P----VLK--- 328 (474)
Q Consensus 282 ------~~~~~~~~h~~~V~~l~~spd~---~~lasg~~Dg~v~iwd~~~~~-----------------~----~~~--- 328 (474)
..+..+.+|...|.+|+|...+ -+||+++.|..|+||.+.-+. + ...
T Consensus 176 ~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~ 255 (764)
T KOG1063|consen 176 SSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQY 255 (764)
T ss_pred cCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEE
Confidence 0234467899999999998644 489999999999999864211 1 111
Q ss_pred -------EccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc--eeeeec----C--CCCeEEEEEcCCCCeEE
Q 011971 329 -------YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT--HLSCMD----T--GSQVCNLVWSKNVNELV 393 (474)
Q Consensus 329 -------~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~--~~~~~~----~--~~~v~~l~~s~~~~~l~ 393 (474)
+.+|...|+++.|+|.+..||.+. .|.++.+|...+.. -+..+. . ........|+++++.++
T Consensus 256 ~is~eall~GHeDWV~sv~W~p~~~~LLSAS---aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii 332 (764)
T KOG1063|consen 256 RISFEALLMGHEDWVYSVWWHPEGLDLLSAS---ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVII 332 (764)
T ss_pred EEehhhhhcCcccceEEEEEccchhhheecc---cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEE
Confidence 137999999999999987666654 79999999866542 222221 1 23478899999998888
Q ss_pred EEEecCCCeEEEEECCC---CceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 011971 394 STHGYSQNQIIVWRYPT---MSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 394 ~~~g~~dg~I~iwd~~~---~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
+ -+..|..++|.... ......+.||...|.+++|.|.|++|++.+.|.+-|++--.
T Consensus 333 ~--~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 333 A--HGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred E--ecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc
Confidence 7 56789999999332 23445567999999999999999999999999999998766
No 149
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=6.3e-20 Score=179.57 Aligned_cols=237 Identities=18% Similarity=0.279 Sum_probs=194.4
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC----CEEEEEeCCCcEEEEECcCC
Q 011971 205 LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQ 280 (474)
Q Consensus 205 ~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~ 280 (474)
.+|++.|.||...|.|.+||+|+.||+|+||.+.++++++++. ..+.|.|++|++ .+|+++-. ..+.+.+..-+
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~-~~~~ivnp~~G 474 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG-ECVLIVNPIFG 474 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEec-CceEEeCcccc
Confidence 3899999999999999999999999999999999999999987 456899999985 23444433 33444432111
Q ss_pred ------------------------------------cceEeeecCcCCCEEEEEEecCCCEEEEEeCC---CcEEEEECC
Q 011971 281 ------------------------------------EDFVSKLSGHKSEVCGLKWSYDNRELASGGND---NRLFVWNQH 321 (474)
Q Consensus 281 ------------------------------------~~~~~~~~~h~~~V~~l~~spd~~~lasg~~D---g~v~iwd~~ 321 (474)
+.-+.....|...|..+.|+..|.+|++..-+ ..|.|.++.
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS 554 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS 554 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence 00122334578889999999999999987654 469999998
Q ss_pred CCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC-CeEEEEEcCCCCeEEEEEecCC
Q 011971 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGS-QVCNLVWSKNVNELVSTHGYSQ 400 (474)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~-~v~~l~~s~~~~~l~~~~g~~d 400 (474)
......-|....+.|.++.|+|...+++++ ....|++||+.....+..+.++. .|..++.+|.|..|++ |+.|
T Consensus 555 K~~sQ~PF~kskG~vq~v~FHPs~p~lfVa----Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~--gs~d 628 (733)
T KOG0650|consen 555 KRKSQSPFRKSKGLVQRVKFHPSKPYLFVA----TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL--GSYD 628 (733)
T ss_pred cccccCchhhcCCceeEEEecCCCceEEEE----eccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE--ecCC
Confidence 776666676678889999999999988887 47899999999888887777665 5889999999999999 8899
Q ss_pred CeEEEEECCC-CceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 011971 401 NQIIVWRYPT-MSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449 (474)
Q Consensus 401 g~I~iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~ 449 (474)
+.+..||+.- .++..++.-|...|.+++|++.=.++++|+.||++.|+.
T Consensus 629 ~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred CeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 9999999974 467778889999999999999989999999999998874
No 150
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.85 E-value=7.9e-18 Score=170.67 Aligned_cols=289 Identities=16% Similarity=0.242 Sum_probs=229.1
Q ss_pred CCcccccCCCCCCCcceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 011971 154 SPYKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQ 233 (474)
Q Consensus 154 ~p~~~l~ap~~~~d~~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~ 233 (474)
.|+|.+.. ..++..+...+-...-+++++-++...+||.+.-.++.+-. .+...|+|++-. ..++++++. ..|.
T Consensus 25 apfR~lG~--vsn~VP~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~vs~-~lp~~I~alas~--~~~vy~A~g-~~i~ 98 (910)
T KOG1539|consen 25 APFRALGY--VSNGVPFRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFVSK-PLPDKITALASD--KDYVYVASG-NKIY 98 (910)
T ss_pred cchhhhce--ecCCCceeeeecCceEEEEEecCceEEEEeccceEEEEecC-CCCCceEEEEec--CceEEEecC-cEEE
Confidence 45555543 23333344444455667888889999999998766655442 567899999765 456666654 3577
Q ss_pred EecCCCC-eEEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcce----EeeecCcCCCEEEEEEecCC--CEE
Q 011971 234 IWDASRC-KRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDF----VSKLSGHKSEVCGLKWSYDN--REL 306 (474)
Q Consensus 234 iwd~~~~-~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~----~~~~~~h~~~V~~l~~spd~--~~l 306 (474)
+|- .+ .....+..|.+.|.-+..-+..++++..++.+.+|+....... ...+....+.|+++. +|.. +.+
T Consensus 99 ~~~--rgk~i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKI 175 (910)
T KOG1539|consen 99 AYA--RGKHIRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKI 175 (910)
T ss_pred EEE--ccceEEEEeccccceEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeE
Confidence 775 44 3455667888899999988999999999999999998874211 122222333488774 6643 568
Q ss_pred EEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-CCeEEEEE
Q 011971 307 ASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-SQVCNLVW 385 (474)
Q Consensus 307 asg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~-~~v~~l~~ 385 (474)
+.|+.+|.+.+|++++++.++++.++...|+++.-+|--. +++.|. .+|+|.++|++.++.+.++++. ++|+++.|
T Consensus 176 vvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLD-VVaiG~--~~G~ViifNlK~dkil~sFk~d~g~VtslSF 252 (910)
T KOG1539|consen 176 VVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALD-VVAIGL--ENGTVIIFNLKFDKILMSFKQDWGRVTSLSF 252 (910)
T ss_pred EEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcce-EEEEec--cCceEEEEEcccCcEEEEEEccccceeEEEe
Confidence 9999999999999999999999999999999999999754 677765 8999999999999999999986 99999999
Q ss_pred cCCCCeEEEEEecCCCeEEEEECCCCceeEEEc-CCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCC
Q 011971 386 SKNVNELVSTHGYSQNQIIVWRYPTMSKLATLT-GHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 386 s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
..||..++++ |...|.+.+||++..+.+..+. .|.+.|..+.|-|....|++++.|..+++|=.+.+.-
T Consensus 253 rtDG~p~las-~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg 322 (910)
T KOG1539|consen 253 RTDGNPLLAS-GRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDG 322 (910)
T ss_pred ccCCCeeEEe-ccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCC
Confidence 9999998886 7788999999999888877776 7989999999999999999999999999998885543
No 151
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.84 E-value=4.1e-19 Score=181.06 Aligned_cols=267 Identities=18% Similarity=0.277 Sum_probs=203.8
Q ss_pred CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEecCCCCeE--EEE----ecCCCCcEEEEEec
Q 011971 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRCKR--VRT----MEGHRLRVGALAWS 259 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp-~g~~la~gs~dg~I~iwd~~~~~~--~~~----~~~h~~~V~~l~~~ 259 (474)
+.++||++......... +.....|+|++|+| +..+||.|+.+|.|.+||+..+.. ... ...|..+|..+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELV-LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEE-EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 37999999877333332 34578999999999 457888899999999999987655 222 23699999999996
Q ss_pred ----CCEEEEEeCCCcEEEEECcCCcceEeee----c-------CcCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCC
Q 011971 260 ----SSLLSSGSRDKSILQRDIRAQEDFVSKL----S-------GHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHST 323 (474)
Q Consensus 260 ----~~~l~sgs~dg~I~iwd~~~~~~~~~~~----~-------~h~~~V~~l~~sp-d~~~lasg~~Dg~v~iwd~~~~ 323 (474)
+.-|++++.||.|..|+++.-..+.... . .-...+++++|.+ +-..+++|+.+|.|+.-+....
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 3569999999999999987544221111 1 1224578899987 5578999999999988443322
Q ss_pred c--------ceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECC-CCceeeeecC-CCCeEEEEEcCCCCeEE
Q 011971 324 Q--------PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT-TNTHLSCMDT-GSQVCNLVWSKNVNELV 393 (474)
Q Consensus 324 ~--------~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~-~~~~~~~~~~-~~~v~~l~~s~~~~~l~ 393 (474)
+ ....+..|.++|.++.++|.+..++.++| |-++++|... ...++..+.. ...+.+++|||....++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g---DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF 457 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG---DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVF 457 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeec---cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEE
Confidence 2 23355578999999999999998988885 9999999987 5666666654 44599999999988777
Q ss_pred EEEecCCCeEEEEECCC--CceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 011971 394 STHGYSQNQIIVWRYPT--MSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQN 458 (474)
Q Consensus 394 ~~~g~~dg~I~iwd~~~--~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~ 458 (474)
++ +..+|.|.|||+.. ..++.+...+......+.|+++|+.|+.|...|++++|++...-....
T Consensus 458 ~~-~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l~~~~ 523 (555)
T KOG1587|consen 458 AT-VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESLAVPS 523 (555)
T ss_pred EE-EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCchhhccC
Confidence 66 78899999999863 455666665666777888999999999999999999999976554433
No 152
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=2.3e-19 Score=176.35 Aligned_cols=131 Identities=23% Similarity=0.387 Sum_probs=103.9
Q ss_pred CCCCCCcccccCCCCC---CCcceeeeeCCC--CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEE
Q 011971 150 KVPRSPYKILDAPALQ---DDFYLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLA 224 (474)
Q Consensus 150 ~i~~~p~~~l~ap~~~---~d~~v~~l~~s~--~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la 224 (474)
++|+-+...|.+|++. .+..+.++.|++ +++++++..++|+|||+.+++..-... +|.+.|.+..|+.||.+|+
T Consensus 108 ~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~-~h~d~vQSa~WseDG~lla 186 (1012)
T KOG1445|consen 108 KLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKTAVELS-GHTDKVQSADWSEDGKLLA 186 (1012)
T ss_pred ecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCceeeccc-CCchhhhccccccCCceEe
Confidence 4556666777777663 567789999998 899999999999999999988765543 8999999999999999999
Q ss_pred EEeCCCcEEEecCC-CCeEEEEecCCCCc-EEEEEecCC--EEEEEeCC----CcEEEEECcCCc
Q 011971 225 VGTSHGKVQIWDAS-RCKRVRTMEGHRLR-VGALAWSSS--LLSSGSRD----KSILQRDIRAQE 281 (474)
Q Consensus 225 ~gs~dg~I~iwd~~-~~~~~~~~~~h~~~-V~~l~~~~~--~l~sgs~d----g~I~iwd~~~~~ 281 (474)
+.+.|..|+|||.. .++.+...++|.+. =..+.|-++ .|++.+.+ ..|++||.+...
T Consensus 187 tscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~ 251 (1012)
T KOG1445|consen 187 TSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFG 251 (1012)
T ss_pred eecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhcccchhhheeeeeeeccccC
Confidence 99999999999986 45677777888653 345778764 56665544 568899987544
No 153
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=6e-19 Score=172.78 Aligned_cols=270 Identities=18% Similarity=0.279 Sum_probs=210.9
Q ss_pred ceeeeeCCC-CcEEEEEc-CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEecC-------
Q 011971 169 YLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNT--HLAVGTSHGKVQIWDA------- 237 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~~-d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~--~la~gs~dg~I~iwd~------- 237 (474)
.+.+++..+ +..|+.|. ||+|+||.+.+|.++..+.+ .+.|.||+|+|.+. .||++.... +.|.+.
T Consensus 402 ~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~--d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e 478 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF--DSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLE 478 (733)
T ss_pred eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee--cceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhh
Confidence 367777777 66677665 78999999999999999865 57999999999764 455554333 444331
Q ss_pred --------------------------CC----CeEEEEecCCCCcEEEEEec--CCEEEEEeCC---CcEEEEECcCCcc
Q 011971 238 --------------------------SR----CKRVRTMEGHRLRVGALAWS--SSLLSSGSRD---KSILQRDIRAQED 282 (474)
Q Consensus 238 --------------------------~~----~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~d---g~I~iwd~~~~~~ 282 (474)
.. .+-++..-.|...|..+.|+ +++|++...+ ..|.|+++.....
T Consensus 479 ~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s 558 (733)
T KOG0650|consen 479 VGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS 558 (733)
T ss_pred hcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc
Confidence 10 01123444688899999998 6899988764 4688999876552
Q ss_pred eEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEE
Q 011971 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (474)
Q Consensus 283 ~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~i 362 (474)
...+..-.+.|.++.|+|...+|++++. ..|+|||+.....+.++......|..++.+|.|.+|++.+ .|+.+..
T Consensus 559 -Q~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs---~d~k~~W 633 (733)
T KOG0650|consen 559 -QSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS---YDKKMCW 633 (733)
T ss_pred -cCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec---CCCeeEE
Confidence 3445555677999999999999988876 6799999998888888877788899999999999888854 8999999
Q ss_pred EECCCC-ceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC---------CCceeEEEcCCCcc----EEEE
Q 011971 363 WNTTTN-THLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP---------TMSKLATLTGHTFR----VLYL 427 (474)
Q Consensus 363 wd~~~~-~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~---------~~~~~~~l~~h~~~----V~~l 427 (474)
||+.-. +..+.+. |...+++++|++.-..+++ |+.||.+.||.-. -.-++..+.+|... |+++
T Consensus 634 fDldlsskPyk~lr~H~~avr~Va~H~ryPLfas--~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~ 711 (733)
T KOG0650|consen 634 FDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFAS--GSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDT 711 (733)
T ss_pred EEcccCcchhHHhhhhhhhhhhhhhccccceeee--ecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEee
Confidence 999765 3444444 5667999999999998888 8899999998632 12456778888765 9999
Q ss_pred EECCCCCEEEEEeCCCcEEEE
Q 011971 428 AISPDGQTIVTGAGDETLRFW 448 (474)
Q Consensus 428 ~~spdg~~l~t~s~Dg~I~iW 448 (474)
.|+|...+|+++++||+|++|
T Consensus 712 ~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 712 IWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cccCCCceEEecCCCceEEee
Confidence 999999999999999999998
No 154
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.84 E-value=6.7e-19 Score=175.14 Aligned_cols=291 Identities=19% Similarity=0.292 Sum_probs=227.1
Q ss_pred CCCCCCCcceeeeeCCC-C-cEEEEEcCCeEEEEeCCCC--CEEEEEec---C-CCCCEEEEEEcCCCCEEEEEeCCCcE
Q 011971 161 APALQDDFYLNLVDWSS-H-NVLAVGLGNCVYLWNACSS--KVTKLCDL---G-IDDSVCSVGWANRNTHLAVGTSHGKV 232 (474)
Q Consensus 161 ap~~~~d~~v~~l~~s~-~-~~la~~~d~~V~lwd~~~~--~~~~~~~~---~-~~~~V~~v~~sp~g~~la~gs~dg~I 232 (474)
+-...++-+|..+.|.| . .+|+++.|.++.+|...+. -......+ + ........-|+|+++.+++-+..|-.
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 33335666899999999 3 7899999999999987654 33333333 2 24468889999999999999999999
Q ss_pred EEecCCCC---eEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCc---ceEeeecCcCCCEEEEEEecCCC
Q 011971 233 QIWDASRC---KRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE---DFVSKLSGHKSEVCGLKWSYDNR 304 (474)
Q Consensus 233 ~iwd~~~~---~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V~~l~~spd~~ 304 (474)
++|..... .....+.||...|.+++|+ +.+|++.+.|.+-+++-.-..+ +.+..-+-|...++|+++-+...
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 99983322 2334467999999999998 6899999999999998655222 22344456888899999988777
Q ss_pred EEEEEeCCCcEEEEECCC-------------------------------------------Cc-----------------
Q 011971 305 ELASGGNDNRLFVWNQHS-------------------------------------------TQ----------------- 324 (474)
Q Consensus 305 ~lasg~~Dg~v~iwd~~~-------------------------------------------~~----------------- 324 (474)
.+++|.....+++|+... |.
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 899999999999997521 00
Q ss_pred ----------------ceEEEccCCCcEEEEEECCCCCcEEEEecCCC---CCeEEEEECCCCceeeeec-CCCCeEEEE
Q 011971 325 ----------------PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTA---DRCIRFWNTTTNTHLSCMD-TGSQVCNLV 384 (474)
Q Consensus 325 ----------------~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~---d~~I~iwd~~~~~~~~~~~-~~~~v~~l~ 384 (474)
.++++.+|...|.+++.+|+++ ++|+++-+. -..|++|++.+...+..+. |.-.|+.++
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~ 579 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLA 579 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEE
Confidence 1122347889999999999987 777765322 2459999999988888665 556799999
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCCCc----eeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 385 WSKNVNELVSTHGYSQNQIIVWRYPTMS----KLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 385 ~s~~~~~l~~~~g~~dg~I~iwd~~~~~----~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
||||+++|++ .+.|..+.+|...... .....+.|+.-|.++.|+|++.+++|++.|.+|++|.....+
T Consensus 580 FSpdg~~LLs--vsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 580 FSPDGRYLLS--VSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR 651 (764)
T ss_pred ECCCCcEEEE--eecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCch
Confidence 9999999999 5699999999875322 133467899999999999999999999999999999998873
No 155
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=4.5e-19 Score=165.95 Aligned_cols=244 Identities=19% Similarity=0.338 Sum_probs=189.5
Q ss_pred CCcceeeeeCCCC------cEEEEE----cCCeEEEEe-CCCCCEEEEEec--CCCCCEEEEEEcC-CCCEEEEEeCCCc
Q 011971 166 DDFYLNLVDWSSH------NVLAVG----LGNCVYLWN-ACSSKVTKLCDL--GIDDSVCSVGWAN-RNTHLAVGTSHGK 231 (474)
Q Consensus 166 ~d~~v~~l~~s~~------~~la~~----~d~~V~lwd-~~~~~~~~~~~~--~~~~~V~~v~~sp-~g~~la~gs~dg~ 231 (474)
+|..|+-..|.+. .+||+- .+|...+.- -++|++.....+ +|.++|..++|+| +.+.||+|+.|.+
T Consensus 26 ddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~ 105 (472)
T KOG0303|consen 26 DDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTK 105 (472)
T ss_pred cceeeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCce
Confidence 4566777777652 344442 122222222 223443333222 8999999999999 4578999999999
Q ss_pred EEEecCCCC-------eEEEEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec
Q 011971 232 VQIWDASRC-------KRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY 301 (474)
Q Consensus 232 I~iwd~~~~-------~~~~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp 301 (474)
|.||.+..+ +.+..+.+|..+|.-++|++ +.|++++.|.+|.+|++.+++..+ .+. |...|.++.|+.
T Consensus 106 v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali-~l~-hpd~i~S~sfn~ 183 (472)
T KOG0303|consen 106 VMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALI-TLD-HPDMVYSMSFNR 183 (472)
T ss_pred EEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceee-ecC-CCCeEEEEEecc
Confidence 999998654 45677889999999999995 899999999999999999998544 444 999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcceEEEccCCC-cEEEEEECCCCCcEEEEec-CCCCCeEEEEECCC---CceeeeecC
Q 011971 302 DNRELASGGNDNRLFVWNQHSTQPVLKYCEHTA-AVKAIAWSPHLHGLLASGG-GTADRCIRFWNTTT---NTHLSCMDT 376 (474)
Q Consensus 302 d~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~-~V~~l~~sp~~~~ll~sg~-Gt~d~~I~iwd~~~---~~~~~~~~~ 376 (474)
||.+|++.+.|..|+|||.++++.+..-..|.+ .-..+.|-.++. ++.+|. ...++.+-+||..+ .-.+.++++
T Consensus 184 dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt 262 (472)
T KOG0303|consen 184 DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDT 262 (472)
T ss_pred CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEecc
Confidence 999999999999999999999999988877765 345566777777 777763 22478899998655 345677888
Q ss_pred CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce
Q 011971 377 GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (474)
Q Consensus 377 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~ 413 (474)
.+.|.---|.++.+.++.+ |-.|+.|+-|.+.+..+
T Consensus 263 SnGvl~PFyD~dt~ivYl~-GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 263 SNGVLLPFYDPDTSIVYLC-GKGDSSIRYFEITNEPP 298 (472)
T ss_pred CCceEEeeecCCCCEEEEE-ecCCcceEEEEecCCCc
Confidence 8889888899999888876 88999999999876553
No 156
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.84 E-value=1.9e-18 Score=156.03 Aligned_cols=278 Identities=16% Similarity=0.261 Sum_probs=205.5
Q ss_pred CCCCcceeeeeCC----CCcEEEEEc-----CCeEEEE--eCCCCCEEEEEecCCCCCEEEEEEcCCC-----CEEEEEe
Q 011971 164 LQDDFYLNLVDWS----SHNVLAVGL-----GNCVYLW--NACSSKVTKLCDLGIDDSVCSVGWANRN-----THLAVGT 227 (474)
Q Consensus 164 ~~~d~~v~~l~~s----~~~~la~~~-----d~~V~lw--d~~~~~~~~~~~~~~~~~V~~v~~sp~g-----~~la~gs 227 (474)
+...+.+..++|+ .+..||+|+ .+.|.|- |..+++.+..-.+.|.-+++.+.|.|+. ++||+.+
T Consensus 41 Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~ 120 (364)
T KOG0290|consen 41 YNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS 120 (364)
T ss_pred ecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc
Confidence 3445668899999 356777774 3566665 4456676666666889999999999976 3565543
Q ss_pred CCCcEEEecCCCC--eE--EEEe-----cCCCCcEEEEEec---CCEEEEEeCCCcEEEEECcCCc--ceEeeecCcCCC
Q 011971 228 SHGKVQIWDASRC--KR--VRTM-----EGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQE--DFVSKLSGHKSE 293 (474)
Q Consensus 228 ~dg~I~iwd~~~~--~~--~~~~-----~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~ 293 (474)
..+++|.+... +. ...+ ..+.++++++.|+ ++++.+.+-|-+..|||+.++. .....+.+|..+
T Consensus 121 --D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKE 198 (364)
T KOG0290|consen 121 --DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKE 198 (364)
T ss_pred --CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcc
Confidence 37999998632 11 1111 2467899999998 6999999999999999999863 245678899999
Q ss_pred EEEEEEecCC-CEEEEEeCCCcEEEEECCCCcceEEEc---cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc
Q 011971 294 VCGLKWSYDN-RELASGGNDNRLFVWNQHSTQPVLKYC---EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (474)
Q Consensus 294 V~~l~~spd~-~~lasg~~Dg~v~iwd~~~~~~~~~~~---~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~ 369 (474)
|..++|...+ +.||+.|.||.|++||++..+.-..+. ....+...++|++...+++|+-. -....|.+.|++...
T Consensus 199 V~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~-~dS~~V~iLDiR~P~ 277 (364)
T KOG0290|consen 199 VYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFA-MDSNKVVILDIRVPC 277 (364)
T ss_pred eeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhh-cCCceEEEEEecCCC
Confidence 9999999854 578999999999999999865433332 23568899999999888888764 245679999998743
Q ss_pred -eeeee-cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce------eEEEcCCCccEEEEEECC-CCCEEEEEe
Q 011971 370 -HLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK------LATLTGHTFRVLYLAISP-DGQTIVTGA 440 (474)
Q Consensus 370 -~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~------~~~l~~h~~~V~~l~~sp-dg~~l~t~s 440 (474)
.+..+ .|.+.|..++|.|....-+++ ++.|.++.|||+..+-. +..+. -.+.|..+.|++ .+.+|+.+.
T Consensus 278 tpva~L~~H~a~VNgIaWaPhS~~hict-aGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 278 TPVARLRNHQASVNGIAWAPHSSSHICT-AGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred cceehhhcCcccccceEecCCCCceeee-cCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe
Confidence 34444 478899999999988776665 56899999999976533 22222 456799999996 566777765
Q ss_pred CCCcEEE
Q 011971 441 GDETLRF 447 (474)
Q Consensus 441 ~Dg~I~i 447 (474)
. .++.+
T Consensus 356 ~-kklei 361 (364)
T KOG0290|consen 356 G-KKLEI 361 (364)
T ss_pred c-CeeeE
Confidence 4 34444
No 157
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.84 E-value=4e-19 Score=169.19 Aligned_cols=243 Identities=21% Similarity=0.269 Sum_probs=197.2
Q ss_pred CCCCEEEEEEcCCC--CEEEEEeCCCcEEEecCCCC----eEEEEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEEC
Q 011971 207 IDDSVCSVGWANRN--THLAVGTSHGKVQIWDASRC----KRVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDI 277 (474)
Q Consensus 207 ~~~~V~~v~~sp~g--~~la~gs~dg~I~iwd~~~~----~~~~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~ 277 (474)
+.+.|++++|+|.. +++|+|...|.|-+||+.+. ..+..+..|..+|.+|.|++ ..+++.+.||+|+.-|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 57899999999965 58999999999999999522 34566788999999999985 78999999999999999
Q ss_pred cCCc-ceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcc-eEEEccCCCcEEEEEECCCCCcEEEEecCC
Q 011971 278 RAQE-DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP-VLKYCEHTAAVKAIAWSPHLHGLLASGGGT 355 (474)
Q Consensus 278 ~~~~-~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~-~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt 355 (474)
.... ..+..+......++++.|+.+...++.|.+=|...+||+++... ...+.-|...|..|+++|-..+++++++
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s-- 342 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATAS-- 342 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecc--
Confidence 8754 12333333556688899999888888998888999999998765 5556678889999999999999999997
Q ss_pred CCCeEEEEECCCCc-----eeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC----CCceeEEEcCCCc----
Q 011971 356 ADRCIRFWNTTTNT-----HLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP----TMSKLATLTGHTF---- 422 (474)
Q Consensus 356 ~d~~I~iwd~~~~~-----~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~----~~~~~~~l~~h~~---- 422 (474)
.|++.+|||++.-. .+..+.|...|.+..|||.+..|++ .+.|+.|+|||.. ...+..++. |..
T Consensus 343 ~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~T--T~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~R 419 (498)
T KOG4328|consen 343 LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLT--TCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGR 419 (498)
T ss_pred cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEe--eccCCceEEeecccccccCCccceee-ccCcccc
Confidence 99999999998632 3667778899999999999988888 5689999999983 334444443 321
Q ss_pred --cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 423 --RVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 423 --~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
.....+|.|+..+|++|..-..|-|+|-..+.
T Consensus 420 wlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 420 WLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred cccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 24557899999999999888888888877766
No 158
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.4e-19 Score=164.12 Aligned_cols=269 Identities=17% Similarity=0.277 Sum_probs=195.5
Q ss_pred cEEEEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEecCCCCeEEEEe--cCCC-Cc
Q 011971 179 NVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDASRCKRVRTM--EGHR-LR 252 (474)
Q Consensus 179 ~~la~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp--~g~~la~gs~dg~I~iwd~~~~~~~~~~--~~h~-~~ 252 (474)
+.+|++ +.|.|++||..+++....+. ++...+..+.|.. ..+.+.+|+.||+|++||+........+ ..+. .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk-~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFK-GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheec-CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 445565 57899999999999988886 6788888999987 4578999999999999999877655443 3455 56
Q ss_pred EEEEEec--CCEEEEEeC----CCcEEEEECcCCcceEe-eecCcCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCc
Q 011971 253 VGALAWS--SSLLSSGSR----DKSILQRDIRAQEDFVS-KLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHSTQ 324 (474)
Q Consensus 253 V~~l~~~--~~~l~sgs~----dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~sp-d~~~lasg~~Dg~v~iwd~~~~~ 324 (474)
..+++-+ .+++++|.. +-.|.+||+|..++.+. -...|...|++|.|+| +-++|++|+.||.|.|||+....
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 7777775 567777753 56799999999887443 4467999999999999 56899999999999999987542
Q ss_pred ---ceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-------------CCeEEEEEcC-
Q 011971 325 ---PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-------------SQVCNLVWSK- 387 (474)
Q Consensus 325 ---~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~-------------~~v~~l~~s~- 387 (474)
.+...-.|...|.++.|...+..-+.+-. ......+|+++.+.+...+... ..+... .+|
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clT--H~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~ 276 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLT--HMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPG 276 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEE--ccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCC
Confidence 23333378888999999988732233322 7899999999988765444321 112222 223
Q ss_pred CCCeEEEEEecCCCeEEEEECC------CCceeEEEcC-CCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 388 NVNELVSTHGYSQNQIIVWRYP------TMSKLATLTG-HTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 388 ~~~~l~~~~g~~dg~I~iwd~~------~~~~~~~l~~-h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
+...++++ |..-|...++-+. ..+.+..+.+ |..-|.++.|...+..+.||++||.|.+|....
T Consensus 277 ~~~~~~l~-g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 277 DKDTCALA-GTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred CcceEEEe-ccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 33344443 4435555554433 2345666666 677788899988888999999999999999743
No 159
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=9.3e-17 Score=160.47 Aligned_cols=281 Identities=31% Similarity=0.502 Sum_probs=219.7
Q ss_pred CcceeeeeCCC-Cc-EEEEEcCCeEEEEeCCCCC-EEEEEecCCCCCEEEEEE-cCCCC-EEEEEeC-CCcEEEecCCC-
Q 011971 167 DFYLNLVDWSS-HN-VLAVGLGNCVYLWNACSSK-VTKLCDLGIDDSVCSVGW-ANRNT-HLAVGTS-HGKVQIWDASR- 239 (474)
Q Consensus 167 d~~v~~l~~s~-~~-~la~~~d~~V~lwd~~~~~-~~~~~~~~~~~~V~~v~~-sp~g~-~la~gs~-dg~I~iwd~~~- 239 (474)
...+..+.+.+ +. ++..+.++.+.+|+...+. ....+...+...+..+.+ .+++. +++..+. |+.+.+|+...
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 144 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP 144 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCC
Confidence 34477777776 44 4444569999999999886 444443222247787877 78887 5555444 89999999998
Q ss_pred CeEEEEecCCCCcEEEEEecC--CEEEEEeC-CCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCC-EEEEEeCCCcE
Q 011971 240 CKRVRTMEGHRLRVGALAWSS--SLLSSGSR-DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR-ELASGGNDNRL 315 (474)
Q Consensus 240 ~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~-~lasg~~Dg~v 315 (474)
......+..|...|..++|++ ..+++++. |+.+++|++.... .+..+.+|...|.+++|+|++. .+++++.|+.|
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 223 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI 223 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceEEEEecCCCcE
Confidence 888889999999999999985 46788875 9999999998744 5777788999999999999998 55555999999
Q ss_pred EEEECCCCcceE-EEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-eeee-cCCCCeEEEEEcCCCCeE
Q 011971 316 FVWNQHSTQPVL-KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH-LSCM-DTGSQVCNLVWSKNVNEL 392 (474)
Q Consensus 316 ~iwd~~~~~~~~-~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~-~~~~-~~~~~v~~l~~s~~~~~l 392 (474)
++||...+..+. .+..|...+ ...|+|++. ++++++ .|+.+++|++..... +..+ .+...+.++.|.|++..+
T Consensus 224 ~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 224 RLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGS-LLASGS--SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred EEEECCCCcEEeeecCCCCcce-eEeECCCCC-EEEEec--CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence 999998777777 677888775 448999984 555554 899999999987664 4443 456789999999988888
Q ss_pred EEEEecCCCeEEEEECCCCceeEEEc--CCCccEEEEEECCCCCEEEEE-eCCCcEEEEeCCCCC
Q 011971 393 VSTHGYSQNQIIVWRYPTMSKLATLT--GHTFRVLYLAISPDGQTIVTG-AGDETLRFWNVFPSP 454 (474)
Q Consensus 393 ~~~~g~~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~l~t~-s~Dg~I~iW~l~~~~ 454 (474)
++ +..|+.+.+|+........... .|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 300 ~~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 300 AS--GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EE--eeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 88 5566889999998888777766 788889999994343566665 688999999998876
No 160
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=4.5e-19 Score=166.62 Aligned_cols=247 Identities=22% Similarity=0.348 Sum_probs=185.0
Q ss_pred CCCCEEEEEEcCCCC-EEEEEeCCCcEEEecCCCC---------eEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEE
Q 011971 207 IDDSVCSVGWANRNT-HLAVGTSHGKVQIWDASRC---------KRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQ 274 (474)
Q Consensus 207 ~~~~V~~v~~sp~g~-~la~gs~dg~I~iwd~~~~---------~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~i 274 (474)
...+|.++.|.+++. .||+|+.|..|+||-++.. +.+..+..|...|+++.|++ ++|++|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 356899999998776 9999999999999987542 23456778999999999995 69999999999999
Q ss_pred EECc--------C-----Cc--ceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEE
Q 011971 275 RDIR--------A-----QE--DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAI 339 (474)
Q Consensus 275 wd~~--------~-----~~--~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l 339 (474)
|-.. + .+ .....+.+|..+|..++|+|+++++++|+.|+.+++||+..|+....+.+|...|..+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 9765 2 11 2345677899999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--------------------C----CCCeEEEEEcCCCCeEEEE
Q 011971 340 AWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--------------------T----GSQVCNLVWSKNVNELVST 395 (474)
Q Consensus 340 ~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~--------------------~----~~~v~~l~~s~~~~~l~~~ 395 (474)
+|.|.+.++..-+ .|+..+.+.+.....+..+. + .+-...+.|+|+|..|++-
T Consensus 172 awDpl~qyv~s~s---~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtP 248 (434)
T KOG1009|consen 172 AWDPLNQYVASKS---SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTP 248 (434)
T ss_pred ecchhhhhhhhhc---cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcc
Confidence 9999877555443 46655555554332221111 0 0113345566666555441
Q ss_pred Ee-------------------------------------------------------------------cCCCeEEEEEC
Q 011971 396 HG-------------------------------------------------------------------YSQNQIIVWRY 408 (474)
Q Consensus 396 ~g-------------------------------------------------------------------~~dg~I~iwd~ 408 (474)
.| ...+.|+|||.
T Consensus 249 ag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydt 328 (434)
T KOG1009|consen 249 AGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDT 328 (434)
T ss_pred cceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecc
Confidence 11 12345666666
Q ss_pred CCCceeEEEc-CCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 011971 409 PTMSKLATLT-GHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKS 456 (474)
Q Consensus 409 ~~~~~~~~l~-~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~ 456 (474)
.+..++.... -|-..|+.++|++||..|+..+.||..-+--+...+..
T Consensus 329 q~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 329 QTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 6655655544 47788999999999999999999998887766655443
No 161
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=1.1e-16 Score=160.05 Aligned_cols=279 Identities=31% Similarity=0.526 Sum_probs=222.3
Q ss_pred cceeeeeCCC-CcEEEEEc--CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEecCCCCeEE
Q 011971 168 FYLNLVDWSS-HNVLAVGL--GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNT-HLAVGTSHGKVQIWDASRCKRV 243 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~~~--d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~-~la~gs~dg~I~iwd~~~~~~~ 243 (474)
..+..+.|++ +..++.+. ++.+++|+...+....... +|...|.+++|+|++. .+++++.|+.|++||...+..+
T Consensus 156 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~ 234 (466)
T COG2319 156 ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL 234 (466)
T ss_pred ccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEE
Confidence 3467899998 43555553 8999999999877777665 5899999999999998 5555589999999998888888
Q ss_pred E-EecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011971 244 R-TMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (474)
Q Consensus 244 ~-~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~ 320 (474)
. .+.+|...+ ...|+ +..+++++.|+.+++|+++........+..|...|.++.|+|++..+++++.|+.+.+||.
T Consensus 235 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~ 313 (466)
T COG2319 235 RSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL 313 (466)
T ss_pred eeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEc
Confidence 7 688888875 33565 4688899999999999998776433444678999999999998889998999999999999
Q ss_pred CCCcceEEEc--cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEec
Q 011971 321 HSTQPVLKYC--EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY 398 (474)
Q Consensus 321 ~~~~~~~~~~--~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~ 398 (474)
.......... .|...+..+.|.+++..++..+. .|+.+.+|++..............+..+.+.+ . ......+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~ 389 (466)
T COG2319 314 ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS--DDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D-GRVVSSGS 389 (466)
T ss_pred CCCceEEEeeecccCCceEEEEECCCCCEEEEeec--CCCcEEeeecCCCceeEEecCCceEEEEEECC-C-CCEEEEec
Confidence 8887666665 78888999999423234444433 67999999999887444444444488999999 6 55543367
Q ss_pred CCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 399 SQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 399 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
.++.+.+|+............+...+....+++++..+++++.++.+++|++..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 390 TDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 899999999998888777765547899999999999999999999999999987
No 162
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=9.8e-19 Score=166.67 Aligned_cols=244 Identities=17% Similarity=0.251 Sum_probs=202.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCC--CeEEEEecCCCCcEEEEEec--CC-EEEEEeCCCcEEEEECcCCcc
Q 011971 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASR--CKRVRTMEGHRLRVGALAWS--SS-LLSSGSRDKSILQRDIRAQED 282 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~--~~~~~~~~~h~~~V~~l~~~--~~-~l~sgs~dg~I~iwd~~~~~~ 282 (474)
.+.|++|.|+|....|++++.||+++||.+.. ...+..+.-...+|.+.+|. +. .++++++....+.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 57899999999999999999999999998763 34566666667788888887 44 899999999999999987662
Q ss_pred -eEeeecCcC-CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeE
Q 011971 283 -FVSKLSGHK-SEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCI 360 (474)
Q Consensus 283 -~~~~~~~h~-~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I 360 (474)
.+....++. ..+.....++++++|+..|..|.|.+....+++.+..++ -.+.|..++|+.+++.|+++|+ +|.|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~---~GeV 368 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGG---TGEV 368 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcC---CceE
Confidence 233344444 457788899999999999999999999999999988884 4788999999999999999884 8999
Q ss_pred EEEECCCCceeeeecCCCCe--EEEEEcCCCCeEEEEEecCCCeEEEEECCC------CceeEEEcCCCccEEEEEECCC
Q 011971 361 RFWNTTTNTHLSCMDTGSQV--CNLVWSKNVNELVSTHGYSQNQIIVWRYPT------MSKLATLTGHTFRVLYLAISPD 432 (474)
Q Consensus 361 ~iwd~~~~~~~~~~~~~~~v--~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~------~~~~~~l~~h~~~V~~l~~spd 432 (474)
.+||++...+++.+...+.| +.++.+.++.+|++ |+..|.|.|||..+ .+++..+..-...|++|+|++|
T Consensus 369 ~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~--GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 369 YVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLAT--GSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred EEEecCCcceEEEEeecCccceeeeeecCCCceEEe--ccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence 99999999999988766665 45777799999999 99999999999753 4667777777788999999999
Q ss_pred CCEEEEEe--CCCcEEEEeCCCCCCCC
Q 011971 433 GQTIVTGA--GDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 433 g~~l~t~s--~Dg~I~iW~l~~~~~~~ 457 (474)
++.|+.++ .+..+|+-.+..-....
T Consensus 447 ~qiLAiaS~~~knalrLVHvPS~TVFs 473 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRLVHVPSCTVFS 473 (514)
T ss_pred hhhhhhhhhccccceEEEeccceeeec
Confidence 99988776 46778887776554433
No 163
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.82 E-value=4.6e-18 Score=155.59 Aligned_cols=269 Identities=19% Similarity=0.298 Sum_probs=206.5
Q ss_pred ceeeeeCCC--CcEEEEEcCCeEEEEeCCCC------------CEEEEEecCCCCCEEEEEEc-------CCCCEEEEEe
Q 011971 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSS------------KVTKLCDLGIDDSVCSVGWA-------NRNTHLAVGT 227 (474)
Q Consensus 169 ~v~~l~~s~--~~~la~~~d~~V~lwd~~~~------------~~~~~~~~~~~~~V~~v~~s-------p~g~~la~gs 227 (474)
++..+.|+| .-+|+-+.|+++.+|++... +....+.....+.|...+|- |+..++|+.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 477889999 46788888999999987532 11122222345678888886 6778999999
Q ss_pred CCCcEEEecCCCCeEEEEecC--CCC---cEEEEEecC--CEEEEEeCCCcEEEEEC-cCCcce-Eeee-----cCcCCC
Q 011971 228 SHGKVQIWDASRCKRVRTMEG--HRL---RVGALAWSS--SLLSSGSRDKSILQRDI-RAQEDF-VSKL-----SGHKSE 293 (474)
Q Consensus 228 ~dg~I~iwd~~~~~~~~~~~~--h~~---~V~~l~~~~--~~l~sgs~dg~I~iwd~-~~~~~~-~~~~-----~~h~~~ 293 (474)
.+.-|++||.-+++....+.+ |.. ...+++|++ ..|++ +....|+++|+ +.+..+ +... .+..+-
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 999999999999998887764 433 456789984 55555 45679999999 433311 1121 233677
Q ss_pred EEEEEEecC-CCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-ee
Q 011971 294 VCGLKWSYD-NRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-HL 371 (474)
Q Consensus 294 V~~l~~spd-~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~-~~ 371 (474)
|.+++|+|- ...++.|+....+-|+.-..+.++..+-+|.+.|+.+.|+++|+.|+.-+- .|..|..||++.-. ++
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR--k~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR--KDDKILCWDIRYSRDPV 287 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc--CCCeEEEEeehhccchh
Confidence 899999994 458999999999999998899999999999999999999999996665432 78889999998643 33
Q ss_pred eeec----CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceeEEEcCCCccEEEEEECCCCCEEEEEeCC
Q 011971 372 SCMD----TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT-MSKLATLTGHTFRVLYLAISPDGQTIVTGAGD 442 (474)
Q Consensus 372 ~~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~D 442 (474)
..+. ...+-.-....|.++.|++ |+.+|.|++||+.. +..+..+..|...|+.++++|--.+++|+++.
T Consensus 288 ~~L~rhv~~TNQRI~FDld~~~~~Las--G~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 288 YALERHVGDTNQRILFDLDPKGEILAS--GDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhhccCccceEEEecCCCCceeec--cCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 3332 2334444566789999999 99999999999998 66688888899999999999998888888765
No 164
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.82 E-value=2.6e-17 Score=162.38 Aligned_cols=268 Identities=11% Similarity=0.139 Sum_probs=179.6
Q ss_pred EEEEcCCeEEEEeCCC-CCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEecCC-CCeE--EEEecCCCCcEEE
Q 011971 181 LAVGLGNCVYLWNACS-SKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDAS-RCKR--VRTMEGHRLRVGA 255 (474)
Q Consensus 181 la~~~d~~V~lwd~~~-~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs-~dg~I~iwd~~-~~~~--~~~~~~h~~~V~~ 255 (474)
++.+.++.|++|++.+ ++...+..+...+....++++|++++|++++ .++.|.+|++. +++. +.... .......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~ 84 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTH 84 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceE
Confidence 3445688999999964 4443333334456788899999999988775 47889999986 3332 22222 2335677
Q ss_pred EEecC--CEEEEEe-CCCcEEEEECcCCcc---eEeeecCcCCCEEEEEEecCCCEEEEE-eCCCcEEEEECCCCcceEE
Q 011971 256 LAWSS--SLLSSGS-RDKSILQRDIRAQED---FVSKLSGHKSEVCGLKWSYDNRELASG-GNDNRLFVWNQHSTQPVLK 328 (474)
Q Consensus 256 l~~~~--~~l~sgs-~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spd~~~lasg-~~Dg~v~iwd~~~~~~~~~ 328 (474)
+++++ +.|++++ .++.|.+|++..... .+..+ .+.....+++++|++++++++ ..++.|.+||+.+...+..
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 88884 5666665 488999999975331 12222 233456778899999988654 4569999999976332211
Q ss_pred -----Ec-cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCC--Cc--eeeeecC-------CCCeEEEEEcCCCCe
Q 011971 329 -----YC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT--NT--HLSCMDT-------GSQVCNLVWSKNVNE 391 (474)
Q Consensus 329 -----~~-~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~--~~--~~~~~~~-------~~~v~~l~~s~~~~~ 391 (474)
.. ........++|+|+++.++++.. .++.|.+|++.. ++ .+..+.. ......+.++|++++
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~--~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE--LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEec--CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 11 12344678999999998877764 589999999973 32 2333321 112346889999999
Q ss_pred EEEEEecCCCeEEEEECCCCceeEEEcCCC---ccEEEEEECCCCCEEEEEeC-CCcEEEEeCCCC
Q 011971 392 LVSTHGYSQNQIIVWRYPTMSKLATLTGHT---FRVLYLAISPDGQTIVTGAG-DETLRFWNVFPS 453 (474)
Q Consensus 392 l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~---~~V~~l~~spdg~~l~t~s~-Dg~I~iW~l~~~ 453 (474)
++++ ...++.|.+|++.......++.++. .....++++|||++|+++.. +++|.+|++...
T Consensus 242 lyv~-~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 242 LYAC-DRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred EEEe-cCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence 9995 3457899999996543222222221 23557899999999998775 899999998643
No 165
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.81 E-value=1.2e-18 Score=171.88 Aligned_cols=239 Identities=22% Similarity=0.372 Sum_probs=176.9
Q ss_pred EEEEEcC---CCCEEEEEeCCCcEEEecCCCCeE------EEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCC
Q 011971 212 CSVGWAN---RNTHLAVGTSHGKVQIWDASRCKR------VRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQ 280 (474)
Q Consensus 212 ~~v~~sp---~g~~la~gs~dg~I~iwd~~~~~~------~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~ 280 (474)
.+..|++ ..+.||++..+|.|.++|...... +.....|...|..+.|-+ ..|++++.|.+|+.||+.+.
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 3456664 346899999999999999865432 344557999999999985 68999999999999999987
Q ss_pred cceEee--ecCcCCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCc--------------------c-------eEEEc
Q 011971 281 EDFVSK--LSGHKSEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQ--------------------P-------VLKYC 330 (474)
Q Consensus 281 ~~~~~~--~~~h~~~V~~l~~spd-~~~lasg~~Dg~v~iwd~~~~~--------------------~-------~~~~~ 330 (474)
. ++.. +.+|...|.+++|.+. ...|++|+.||.|.|||++-.. + +....
T Consensus 133 ~-l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 133 R-LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred e-eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 7 4444 7899999999999994 5678999999999999986321 0 11112
Q ss_pred cCCCcEEE---EEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--------C----CCCeEEEEEcCCCCeEEEE
Q 011971 331 EHTAAVKA---IAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--------T----GSQVCNLVWSKNVNELVST 395 (474)
Q Consensus 331 ~h~~~V~~---l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~--------~----~~~v~~l~~s~~~~~l~~~ 395 (474)
.+...|.+ +.+..|.. .|+++|+ .|+.|+|||++......... . ...+.++.....|.+|++
T Consensus 212 A~s~ti~ssvTvv~fkDe~-tlaSaga-~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A- 288 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDES-TLASAGA-ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA- 288 (720)
T ss_pred cccCceeeeeEEEEEeccc-eeeeccC-CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE-
Confidence 34444544 55556655 4455442 79999999999765433221 1 234788888889999999
Q ss_pred EecCCCeEEEEECCCC--ceeEEEcCCCccEE--EEEECCCCCEEEEEeCCCcEEEEeCCCCCC
Q 011971 396 HGYSQNQIIVWRYPTM--SKLATLTGHTFRVL--YLAISPDGQTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 396 ~g~~dg~I~iwd~~~~--~~~~~l~~h~~~V~--~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
.+.|+.|++|++.+. .+++.+.++...-. .-..+||+.+|++|+.|+..++|.+.....
T Consensus 289 -sCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 289 -SCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred -EecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC
Confidence 668999999999864 34556655533211 234689999999999999999999987654
No 166
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=1.6e-18 Score=154.57 Aligned_cols=287 Identities=16% Similarity=0.231 Sum_probs=201.4
Q ss_pred CCCCcccccCCCCCCCcceeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 011971 152 PRSPYKILDAPALQDDFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG 230 (474)
Q Consensus 152 ~~~p~~~l~ap~~~~d~~v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg 230 (474)
|..|+-+|. | +--.++++.|.. +.++++...|.|++|++.+......+.+.+...|+.+.-.|+ ..|.+-+.|+
T Consensus 3 pPdP~fvLR-p---~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~ 77 (323)
T KOG0322|consen 3 PPDPFFVLR-P---HSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDP 77 (323)
T ss_pred CCCCeeEec-c---ccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCc
Confidence 455666666 2 234478888887 556666678999999999998888887667889999999997 4577888999
Q ss_pred cEEEecCCCCeEEEEecCCCCcEEEEEecCCEEEEEeCCC-cEEEEECcC---------Ccce-Eee----ecCcCCCEE
Q 011971 231 KVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDK-SILQRDIRA---------QEDF-VSK----LSGHKSEVC 295 (474)
Q Consensus 231 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg-~I~iwd~~~---------~~~~-~~~----~~~h~~~V~ 295 (474)
.+.+|++.-...+.. |.-.++++-|...-+...+... ....++-+. +... +.. -.+..+.+.
T Consensus 78 ~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvm 154 (323)
T KOG0322|consen 78 LLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVM 154 (323)
T ss_pred eEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCcee
Confidence 999999986554332 4445555555432222222221 111222111 1100 111 112345566
Q ss_pred EEEEec-CCC--EEEEEeCCCcEEEEECCCCcce----------EEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEE
Q 011971 296 GLKWSY-DNR--ELASGGNDNRLFVWNQHSTQPV----------LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (474)
Q Consensus 296 ~l~~sp-d~~--~lasg~~Dg~v~iwd~~~~~~~----------~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~i 362 (474)
+..|.. ++. +|++|.++|.|.+||+.++..+ .....|..+|.++.+.+.-.. =++|+ .+..+..
T Consensus 155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r-Gisgg--a~dkl~~ 231 (323)
T KOG0322|consen 155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR-GISGG--ADDKLVM 231 (323)
T ss_pred eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC-CcCCC--cccccee
Confidence 766543 222 5678889999999999987433 334468999999999865332 22333 6778888
Q ss_pred EECCCC--cee--eeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEE
Q 011971 363 WNTTTN--THL--SCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIV 437 (474)
Q Consensus 363 wd~~~~--~~~--~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~ 437 (474)
|++... .+. .++. .+..+..+.+-||++.+++ .+-|+.|+||..+++.+++.++-|.+.|.+++|+||...++
T Consensus 232 ~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlAT--AGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmA 309 (323)
T KOG0322|consen 232 YSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILAT--AGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMA 309 (323)
T ss_pred eeeccccCcccccceEEecCCCccceEEccCCcEEee--cccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhh
Confidence 887643 221 2222 3456888999999999999 66999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEeCC
Q 011971 438 TGAGDETLRFWNVF 451 (474)
Q Consensus 438 t~s~Dg~I~iW~l~ 451 (474)
.++.|++|-+|++.
T Consensus 310 aaskD~rISLWkLY 323 (323)
T KOG0322|consen 310 AASKDARISLWKLY 323 (323)
T ss_pred hccCCceEEeeecC
Confidence 99999999999973
No 167
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=4.2e-18 Score=155.35 Aligned_cols=194 Identities=16% Similarity=0.300 Sum_probs=161.2
Q ss_pred EEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEc
Q 011971 253 VGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC 330 (474)
Q Consensus 253 V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~ 330 (474)
..|+.|+ +.+|++|+.||.|.|||+.+.. ....+.+|..+|++++|++||+.|++++.|..|.+||+..|.+++.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri- 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI- 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE-
Confidence 7788898 6999999999999999999887 57788999999999999999999999999999999999999999888
Q ss_pred cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee-eecCC----CCeEEEEEcCCCCeEEEEEecCCCeEEE
Q 011971 331 EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS-CMDTG----SQVCNLVWSKNVNELVSTHGYSQNQIIV 405 (474)
Q Consensus 331 ~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~-~~~~~----~~v~~l~~s~~~~~l~~~~g~~dg~I~i 405 (474)
...++|..+.|+|...+.+++.- .+..-.+.++..+.... ..+.. ....+..|.+.|+++++ |...|.+.+
T Consensus 104 rf~spv~~~q~hp~k~n~~va~~--~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIit--GtsKGkllv 179 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKRNKCVATI--MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIIT--GTSKGKLLV 179 (405)
T ss_pred EccCccceeeeccccCCeEEEEE--ecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEE--ecCcceEEE
Confidence 55789999999998766655543 45555555555432211 11111 12333468999999999 999999999
Q ss_pred EECCCCceeEEEcCCC-ccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 406 WRYPTMSKLATLTGHT-FRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 406 wd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
+|..+.++++.++-.. ..|.++.++..|++|+.-+.|..||.|++..
T Consensus 180 ~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 180 YDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred EecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 9999999999988666 7899999999999999999999999999873
No 168
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=7.9e-19 Score=171.24 Aligned_cols=248 Identities=17% Similarity=0.233 Sum_probs=194.6
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCC--------CeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEE
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR--------CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQR 275 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~--------~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iw 275 (474)
.|.+.|+++.|.+....|++++.||.|.+|+++. .+.+.++.+|.++|.|++.. +..+++|+.||+|+.|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 6788899999999999999999999999999932 35778899999999999996 5899999999999999
Q ss_pred ECcCC---------cceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEcc--CCCcEEEEEECCC
Q 011971 276 DIRAQ---------EDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE--HTAAVKAIAWSPH 344 (474)
Q Consensus 276 d~~~~---------~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~--h~~~V~~l~~sp~ 344 (474)
++... ......+.||.+.|+.+++++....|++++.||+|+.|+.....+ .+|.. ..+....+.+-..
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss 450 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSS 450 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccc
Confidence 65421 134567889999999999999999999999999999999877666 33332 2233455655544
Q ss_pred CCcEEEEecCCCCCeEEEEECCCCceeeeecC--------CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEE
Q 011971 345 LHGLLASGGGTADRCIRFWNTTTNTHLSCMDT--------GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLAT 416 (474)
Q Consensus 345 ~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~--------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~ 416 (474)
...+.++.. .-+.--++++.....+..+.. ...+..+.+.|.+...++ +..++.|+++|..++..+..
T Consensus 451 ~~a~~~~s~--~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~--~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 451 RPAHSLASF--RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFT--AHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred hhHhhhhhc--ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEe--cccCCceecccccccccchh
Confidence 322222211 223333444444444444331 245788899999988888 66999999999999999999
Q ss_pred EcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 011971 417 LTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQN 458 (474)
Q Consensus 417 l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~ 458 (474)
...|...++++++.|+|-+|++++.|+.+++|++..+...+.
T Consensus 527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred eeeccceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence 999999999999999999999999999999999987766543
No 169
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=8.7e-18 Score=157.42 Aligned_cols=203 Identities=23% Similarity=0.422 Sum_probs=165.5
Q ss_pred EecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCc------ceEeeecCcCCCEEEEEEecC-CCEEEEEeCCCc
Q 011971 245 TMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQE------DFVSKLSGHKSEVCGLKWSYD-NRELASGGNDNR 314 (474)
Q Consensus 245 ~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~spd-~~~lasg~~Dg~ 314 (474)
.+.+|+++|..++|++ +.+++|+.|.+|.||++.... +++..+.+|...|--+.|+|. .+.|++++.|++
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3569999999999985 789999999999999986543 457889999999999999994 568999999999
Q ss_pred EEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--CCCCeEEEEEcCCCCeE
Q 011971 315 LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNEL 392 (474)
Q Consensus 315 v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~~~~~l 392 (474)
|.+||+.+++.+.++. |...|.++.|+.+|..+..++ .|+.|++||.++++.+.+-. .+..-..+.|-.++. +
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttc---kDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTC---KDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeec---ccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 9999999999999986 999999999999998555444 89999999999999988764 344567788888998 4
Q ss_pred EEEEec---CCCeEEEEECCCCce---eEEEcCCCccEEEEEECCCCCEEE-EEeCCCcEEEEeCCCCC
Q 011971 393 VSTHGY---SQNQIIVWRYPTMSK---LATLTGHTFRVLYLAISPDGQTIV-TGAGDETLRFWNVFPSP 454 (474)
Q Consensus 393 ~~~~g~---~dg~I~iwd~~~~~~---~~~l~~h~~~V~~l~~spdg~~l~-t~s~Dg~I~iW~l~~~~ 454 (474)
+++ |+ ++.++.+||-.+.+. +.++.. ...|.---|.+|...|+ +|-+|+.||.|.+.+..
T Consensus 231 ~tT-Gfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 231 FTT-GFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eee-ccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 443 65 478999999876544 334433 34566666788888776 45579999999998876
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=1.2e-17 Score=152.86 Aligned_cols=239 Identities=18% Similarity=0.344 Sum_probs=181.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC------------eEEEEec-CCCCcEEEEEec---------CCEEEEE
Q 011971 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRC------------KRVRTME-GHRLRVGALAWS---------SSLLSSG 266 (474)
Q Consensus 209 ~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~------------~~~~~~~-~h~~~V~~l~~~---------~~~l~sg 266 (474)
.-.....|+|||..|++-+.|..+.+|++... +....++ .....|...+|- .+++++.
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 34556899999999999999999999987421 1111111 234567888884 2689999
Q ss_pred eCCCcEEEEECcCCcceEeeec--CcCCC---EEEEEEecCCCEEEEEeCCCcEEEEEC-CCCcc--eEEEc-----cCC
Q 011971 267 SRDKSILQRDIRAQEDFVSKLS--GHKSE---VCGLKWSYDNRELASGGNDNRLFVWNQ-HSTQP--VLKYC-----EHT 333 (474)
Q Consensus 267 s~dg~I~iwd~~~~~~~~~~~~--~h~~~---V~~l~~spd~~~lasg~~Dg~v~iwd~-~~~~~--~~~~~-----~h~ 333 (474)
+++.-|.+||.-+++ ....+. .|..+ ..+|+|+|||.+|++|.+ ..|++||+ +.|.. +.... +..
T Consensus 130 sr~~PIh~wdaftG~-lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGK-LRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred cccCceeeeeccccc-cccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhccccccc
Confidence 999999999998877 333332 34443 468999999999998765 78999999 55532 22211 236
Q ss_pred CcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-C
Q 011971 334 AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT-M 411 (474)
Q Consensus 334 ~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~ 411 (474)
+.+.+++|+|....+++.|+ ....+-||+-..+.++..+. +++.|+.++|.++|+.|++. .-.+-.|..||++. .
T Consensus 208 giisc~a~sP~~~~~~a~gs--Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsG-aRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGS--YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSG-ARKDDKILCWDIRYSR 284 (406)
T ss_pred ceeeeeeccCCCCcceeeec--ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccc-ccCCCeEEEEeehhcc
Confidence 78899999999998999986 78888888888877777665 67889999999999999994 34578999999984 5
Q ss_pred ceeEEEcCCCc-c--EEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 412 SKLATLTGHTF-R--VLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 412 ~~~~~l~~h~~-~--V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
.++..+..|.. . =......|+|++|++|+.||.|++||+..
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 66777777654 2 22345678999999999999999999987
No 171
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=2e-17 Score=150.63 Aligned_cols=203 Identities=17% Similarity=0.325 Sum_probs=157.9
Q ss_pred cCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCc---ceEeeecCcCCCEEEEEEec--CCCEEEEEeCCCcEEEEE
Q 011971 247 EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE---DFVSKLSGHKSEVCGLKWSY--DNRELASGGNDNRLFVWN 319 (474)
Q Consensus 247 ~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V~~l~~sp--d~~~lasg~~Dg~v~iwd 319 (474)
.+|..-|.++.|+ +..+++++.|++|+|||.+... .+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4788899999997 7999999999999999975543 34566788999999999976 589999999999999998
Q ss_pred CCC---------CcceEEEccCCCcEEEEEECCCCCcE-EEEecCCCCCeEEEEECCCC------ceeeeec--------
Q 011971 320 QHS---------TQPVLKYCEHTAAVKAIAWSPHLHGL-LASGGGTADRCIRFWNTTTN------THLSCMD-------- 375 (474)
Q Consensus 320 ~~~---------~~~~~~~~~h~~~V~~l~~sp~~~~l-l~sg~Gt~d~~I~iwd~~~~------~~~~~~~-------- 375 (474)
-.. -....++......|+.|.|.|....| +++++ .||.||||+.-.- ....++.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~--aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS--ADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEec--cCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 521 12344566788999999999976655 44444 8999999986543 2333333
Q ss_pred CCCCeEEEEEcCC---CCeEEEEEecCC-----CeEEEEECCC----CceeEEEcCCCccEEEEEECCC----CCEEEEE
Q 011971 376 TGSQVCNLVWSKN---VNELVSTHGYSQ-----NQIIVWRYPT----MSKLATLTGHTFRVLYLAISPD----GQTIVTG 439 (474)
Q Consensus 376 ~~~~v~~l~~s~~---~~~l~~~~g~~d-----g~I~iwd~~~----~~~~~~l~~h~~~V~~l~~spd----g~~l~t~ 439 (474)
......|+.|++. ...|++ |+.+ +.+.||.+.. ...+.++.+|+.+|.+++|.|+ -..|+++
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAv--gs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAV--GSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred ccCcceEEeeccccccCceEEE--EcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence 3455788999974 345666 5444 5899998864 3467788899999999999995 3479999
Q ss_pred eCCCcEEEEeCCCCC
Q 011971 440 AGDETLRFWNVFPSP 454 (474)
Q Consensus 440 s~Dg~I~iW~l~~~~ 454 (474)
+.|| |+||++....
T Consensus 246 ~kDg-v~I~~v~~~~ 259 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVAR 259 (361)
T ss_pred ecCc-EEEEEEeecc
Confidence 9999 9999998644
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=5.1e-17 Score=143.40 Aligned_cols=238 Identities=16% Similarity=0.226 Sum_probs=181.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEecCCC----------CeEEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcC
Q 011971 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASR----------CKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRA 279 (474)
Q Consensus 210 ~V~~v~~sp~g~~la~gs~dg~I~iwd~~~----------~~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~ 279 (474)
.|.+-+|+|.+++|++|..+|.|.++.+.. ...+...++|.++|..++|...+|++|+. |.|+-|..+.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E 90 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNE 90 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehh
Confidence 466678999999999999999999998753 23445558999999999999988888876 9999998765
Q ss_pred Ccce-------EeeecC-----cCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCc
Q 011971 280 QEDF-------VSKLSG-----HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHG 347 (474)
Q Consensus 280 ~~~~-------~~~~~~-----h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 347 (474)
..+. ...... .--+|+++...|..+-++.++.|+.++-||+++|+...++++|...|.+++--.....
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc
Confidence 4320 001111 2246899999998888888889999999999999999999999999999998544443
Q ss_pred EEEEecCCCCCeEEEEECCCCceeeeecCCC---------CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEc
Q 011971 348 LLASGGGTADRCIRFWNTTTNTHLSCMDTGS---------QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLT 418 (474)
Q Consensus 348 ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~---------~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~ 418 (474)
++ +|+ +||++++||+++++++..+.... .-.-.+..-+..+|++ | ....+.+|.+++.++...+.
T Consensus 171 il-sG~--EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvC--G-gGp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 171 IL-SGA--EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVC--G-GGPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred ee-ecC--CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEe--c-CCCceeEEeccCCCceEEEe
Confidence 44 554 99999999999999988775321 1112344456677887 4 34679999999999888775
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 011971 419 GHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 419 ~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~ 457 (474)
-..+|..+.|-. ..+++++....+.-|.+..--..+
T Consensus 245 -ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~Gvl~a~ 280 (325)
T KOG0649|consen 245 -IPARVHLVDFVD--DCVLIGGEGNHVQSYTLNGVLQAN 280 (325)
T ss_pred -cccceeEeeeec--ceEEEeccccceeeeeeccEEEEe
Confidence 456688888854 478888878888888876544433
No 173
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=9.7e-18 Score=151.45 Aligned_cols=234 Identities=19% Similarity=0.339 Sum_probs=180.4
Q ss_pred cCCCCCCCcceeeeeCCCCc-----EEEEEcCCeEEEEeCCC--CCEEEEEec------CCCCCEEEEEEcC-CCCEEEE
Q 011971 160 DAPALQDDFYLNLVDWSSHN-----VLAVGLGNCVYLWNACS--SKVTKLCDL------GIDDSVCSVGWAN-RNTHLAV 225 (474)
Q Consensus 160 ~ap~~~~d~~v~~l~~s~~~-----~la~~~d~~V~lwd~~~--~~~~~~~~~------~~~~~V~~v~~sp-~g~~la~ 225 (474)
..+.+...|.++-+-|.|+. -|.+..+..++||.+.. .++.....+ .+..++++..|+. +-++|.+
T Consensus 89 ~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igt 168 (364)
T KOG0290|consen 89 EDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGT 168 (364)
T ss_pred ccCCCCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEe
Confidence 33445667778888888743 24455677999999874 332221111 3567999999997 5678899
Q ss_pred EeCCCcEEEecCCCCe---EEEEecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeeecCc--CCCEEEE
Q 011971 226 GTSHGKVQIWDASRCK---RVRTMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGH--KSEVCGL 297 (474)
Q Consensus 226 gs~dg~I~iwd~~~~~---~~~~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h--~~~V~~l 297 (474)
.+-|-+..|||++++. ....+-.|...|..++|.. +.|++.+.||.|+++|++..++....+... ..+...|
T Consensus 169 SSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRL 248 (364)
T KOG0290|consen 169 SSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRL 248 (364)
T ss_pred ecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceee
Confidence 9999999999999863 3566778999999999973 799999999999999999877655444433 4678889
Q ss_pred EEec-CCCEEEEEeCC-CcEEEEECCCC-cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-----
Q 011971 298 KWSY-DNRELASGGND-NRLFVWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT----- 369 (474)
Q Consensus 298 ~~sp-d~~~lasg~~D-g~v~iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~----- 369 (474)
+|++ |-+++|+-..| ..|.|.|++.. .++.++.+|.+.|++++|.|+...-++++| .|....+||+...-
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG--DD~qaliWDl~q~~~~~~~ 326 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG--DDCQALIWDLQQMPRENGE 326 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC--CcceEEEEecccccccCCC
Confidence 9998 45677775544 57999999864 678899999999999999999999999987 89999999997643
Q ss_pred -eeeeecCCCCeEEEEEcC-CCCeEEEE
Q 011971 370 -HLSCMDTGSQVCNLVWSK-NVNELVST 395 (474)
Q Consensus 370 -~~~~~~~~~~v~~l~~s~-~~~~l~~~ 395 (474)
++..+..+..|..+.|++ ....++++
T Consensus 327 dPilay~a~~EVNqi~Ws~~~~Dwiai~ 354 (364)
T KOG0290|consen 327 DPILAYTAGGEVNQIQWSSSQPDWIAIC 354 (364)
T ss_pred CchhhhhccceeeeeeecccCCCEEEEE
Confidence 233445678899999996 55666664
No 174
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=8.7e-18 Score=162.70 Aligned_cols=258 Identities=16% Similarity=0.278 Sum_probs=194.7
Q ss_pred eeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcC-------CCCEEEEEeCCCcEEEecCCCCeE
Q 011971 171 NLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-------RNTHLAVGTSHGKVQIWDASRCKR 242 (474)
Q Consensus 171 ~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp-------~g~~la~gs~dg~I~iwd~~~~~~ 242 (474)
.|++|.. ..++.++.|..+.+|+-.+.....+..+..+.-.+.+-.-+ ..+.|++++.||.+.|.+ ..++.
T Consensus 18 c~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~-k~~rV 96 (737)
T KOG1524|consen 18 CCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN-KSARV 96 (737)
T ss_pred EeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec-ccchh
Confidence 5899988 77888888888888775555444444333332222222221 235789999999999987 45777
Q ss_pred EEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011971 243 VRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (474)
Q Consensus 243 ~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~ 320 (474)
.+.+..|.+.+.+-.|+ +.-|+++++||.|++|.-. +- ...++......|.|++|.|+.+.++.+. .+.+.|=.+
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GM-LRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL 173 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GM-LRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPL 173 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-ch-HHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeec
Confidence 78888999999999998 4689999999999999843 22 3344555677899999999887776654 367888888
Q ss_pred CCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCC
Q 011971 321 HSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400 (474)
Q Consensus 321 ~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d 400 (474)
.....+...+.|.+-|.++.|++... ++++|| +|-..++||-........-.+..+|++++|+|+ +.+++ | +-
T Consensus 174 ~~n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgG--ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v--~-S~ 246 (737)
T KOG1524|consen 174 AANSKIIRWRAHDGLVLSLSWSTQSN-IIASGG--EDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLL--W-SY 246 (737)
T ss_pred ccccceeEEeccCcEEEEeecCcccc-ceeecC--CceeEEeecccCcccccCChhccceeeeeeccc-cceee--e-ee
Confidence 77777888899999999999999865 888887 999999999876666666668889999999999 43443 2 22
Q ss_pred CeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 011971 401 NQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 401 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l 450 (474)
+.++ --+...+.|..++||+||..++.|+..|.+.+=-+
T Consensus 247 nt~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 247 NTAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred eeee-----------ecCCCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 3333 11245678999999999999999999998766433
No 175
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=8.8e-18 Score=153.44 Aligned_cols=205 Identities=21% Similarity=0.269 Sum_probs=154.7
Q ss_pred EEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEe---eecCcCCCEEEEEEecCCCEEE-EEeCCCcEEE
Q 011971 244 RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVS---KLSGHKSEVCGLKWSYDNRELA-SGGNDNRLFV 317 (474)
Q Consensus 244 ~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~---~~~~h~~~V~~l~~spd~~~la-sg~~Dg~v~i 317 (474)
..+++|...|++++|+ +..|++++.|+.|++|+++....... ...-.-+..+.+.|.||.+-++ +.-+.+++++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 3467999999999997 68999999999999999986442111 1111223568889999987554 4556678999
Q ss_pred EECCCC---cceE--------EE-ccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-CCeEEEE
Q 011971 318 WNQHST---QPVL--------KY-CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-SQVCNLV 384 (474)
Q Consensus 318 wd~~~~---~~~~--------~~-~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~-~~v~~l~ 384 (474)
|.+... ...+ .| +.|...+..+-....+. ++++++ .|..|.+|+++ |+.+..+++. ..-...+
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas--~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSAS--LDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEec--CCCcEEEEecC-Cceeeeecccccccccee
Confidence 986432 1111 11 24667777777776665 555554 79999999999 9999988854 4566788
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECC--------CCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 385 WSKNVNELVSTHGYSQNQIIVWRYP--------TMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 385 ~s~~~~~l~~~~g~~dg~I~iwd~~--------~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
.||+|++++++ .-.-.|+||..- .-..+.+++||...|+.++|+++...++|.+.||++++||.+-..
T Consensus 236 vSP~GRFia~~--gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY 311 (420)
T KOG2096|consen 236 VSPDGRFIAVS--GFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY 311 (420)
T ss_pred eCCCCcEEEEe--cCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceE
Confidence 99999999994 355679999862 234577889999999999999999999999999999999987543
No 176
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.77 E-value=6.7e-17 Score=145.93 Aligned_cols=265 Identities=18% Similarity=0.243 Sum_probs=195.6
Q ss_pred CCeEEEEeCCCC--CEEEEEecCCCCCEEEEEEcCCC-CEEEEEeCC-------CcEEEecCCCC---------eEEEEe
Q 011971 186 GNCVYLWNACSS--KVTKLCDLGIDDSVCSVGWANRN-THLAVGTSH-------GKVQIWDASRC---------KRVRTM 246 (474)
Q Consensus 186 d~~V~lwd~~~~--~~~~~~~~~~~~~V~~v~~sp~g-~~la~gs~d-------g~I~iwd~~~~---------~~~~~~ 246 (474)
++.|.+.+...+ .+....-+.+.+.|..++-+|.. ..|+++..+ -.+.||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 467776665543 33322223668999999999955 566666542 13679987532 233344
Q ss_pred c-CCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeee-----cCcCCCEEEEEEec--CCCEEEEEeCCCcEE
Q 011971 247 E-GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKL-----SGHKSEVCGLKWSY--DNRELASGGNDNRLF 316 (474)
Q Consensus 247 ~-~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~-----~~h~~~V~~l~~sp--d~~~lasg~~Dg~v~ 316 (474)
. .+-+.|.|+.|.| ..+++-. |..|.+|++......+..+ ..|....++-+|+| +++.+++. .|+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence 3 4566899999986 4566555 8899999998776433222 23667788999999 77777775 578999
Q ss_pred EEECCCCcceEEEc-cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ceeeeec-CCCCeEEEEEcCCCCeEE
Q 011971 317 VWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLSCMD-TGSQVCNLVWSKNVNELV 393 (474)
Q Consensus 317 iwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~-~~~~~~~-~~~~v~~l~~s~~~~~l~ 393 (474)
.||+++.+....+. .|...|..+.|.|+...+|+++| .||.|+|||++.- .++.++. |...|.++.|+|....|+
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g--DdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG--DDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC--CCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence 99999988777765 58889999999999999999997 8999999999864 3555554 566799999999887777
Q ss_pred EEEecCCCeEEEEECCCC-----------------------------ceeEEEcCCCccEEEEEECC-CCCEEEEEeCCC
Q 011971 394 STHGYSQNQIIVWRYPTM-----------------------------SKLATLTGHTFRVLYLAISP-DGQTIVTGAGDE 443 (474)
Q Consensus 394 ~~~g~~dg~I~iwd~~~~-----------------------------~~~~~l~~h~~~V~~l~~sp-dg~~l~t~s~Dg 443 (474)
.+ |++|..|.+|...+- ..+.++..|...|.+++||. |--.+++-+.||
T Consensus 275 Ls-~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 275 LS-GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred Ee-cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence 76 778999999865321 12446677999999999998 444667889999
Q ss_pred cEEEEeCCCCCC
Q 011971 444 TLRFWNVFPSPK 455 (474)
Q Consensus 444 ~I~iW~l~~~~~ 455 (474)
.+.|=++...-+
T Consensus 354 RviIs~V~r~~k 365 (370)
T KOG1007|consen 354 RVIISSVPRFLK 365 (370)
T ss_pred eEEeecCChhhh
Confidence 999887765443
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=2.4e-16 Score=163.36 Aligned_cols=278 Identities=18% Similarity=0.248 Sum_probs=203.3
Q ss_pred eeeeCCC-CcEEEEEc-CCeEEEEeCCCCCEEEEEecC--CCCCEEEEEEcC--CCCEEEEEeCCCcEEEecC-----CC
Q 011971 171 NLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLG--IDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDA-----SR 239 (474)
Q Consensus 171 ~~l~~s~-~~~la~~~-d~~V~lwd~~~~~~~~~~~~~--~~~~V~~v~~sp--~g~~la~gs~dg~I~iwd~-----~~ 239 (474)
..+.+++ ...++++. ...|.|||.+.++...-++.+ ....|+.+++.. |..++++|+.||.|+||+- .+
T Consensus 1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~ 1147 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKK 1147 (1387)
T ss_pred ceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCC
Confidence 3455666 45566665 459999999999887776553 256899999876 4468999999999999974 22
Q ss_pred CeEEEEecC-------CCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec-CCCEEEEE
Q 011971 240 CKRVRTMEG-------HRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASG 309 (474)
Q Consensus 240 ~~~~~~~~~-------h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~lasg 309 (474)
.+.+....+ ..+.-.-+.|. ..+|++++.-..|+|||......+...-.+....|+++.-+- .|+.+++|
T Consensus 1148 ~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AG 1227 (1387)
T KOG1517|consen 1148 PELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAG 1227 (1387)
T ss_pred ceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEe
Confidence 344443321 11112445675 466777777899999999887644433444556677776554 46999999
Q ss_pred eCCCcEEEEECCCCc---ceEEEccCCCc--EEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee--e----cCCC
Q 011971 310 GNDNRLFVWNQHSTQ---PVLKYCEHTAA--VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC--M----DTGS 378 (474)
Q Consensus 310 ~~Dg~v~iwd~~~~~---~~~~~~~h~~~--V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~--~----~~~~ 378 (474)
..||.|++||.+... .+...+.|+.. |..+.+.+.|-.-+++|+ .||.|++||++....... + +.++
T Consensus 1228 faDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs--~~G~I~~~DlR~~~~e~~~~iv~~~~yGs 1305 (1387)
T KOG1517|consen 1228 FADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS--QDGDIQLLDLRMSSKETFLTIVAHWEYGS 1305 (1387)
T ss_pred ecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec--cCCeEEEEecccCcccccceeeeccccCc
Confidence 999999999988653 46677788887 999999998776677765 899999999998432222 1 2255
Q ss_pred CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcC-------CCccEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 011971 379 QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTG-------HTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 379 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~-------h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
..+++..+++...+++ |+. +.|.||++. ++.+..++. ..+.+.+++|+|-.-+|++|+.|.+|.||...
T Consensus 1306 ~lTal~VH~hapiiAs--Gs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1306 ALTALTVHEHAPIIAS--GSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred cceeeeeccCCCeeee--cCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 6999999999999998 766 999999984 344433332 23467999999998899999999999999887
Q ss_pred CCC
Q 011971 452 PSP 454 (474)
Q Consensus 452 ~~~ 454 (474)
...
T Consensus 1382 k~~ 1384 (1387)
T KOG1517|consen 1382 KPR 1384 (1387)
T ss_pred CcC
Confidence 654
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.2e-16 Score=149.41 Aligned_cols=243 Identities=14% Similarity=0.296 Sum_probs=184.6
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCC------CeEEEEecC-CCCcEEEEEec--CCEEEEEeCCCcEEEEE
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR------CKRVRTMEG-HRLRVGALAWS--SSLLSSGSRDKSILQRD 276 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~------~~~~~~~~~-h~~~V~~l~~~--~~~l~sgs~dg~I~iwd 276 (474)
+|.+.|.+|.|+.++++||+|+.|..+++|+++. .+.+..+.. |...|.|++|+ ...+++|..+++|...|
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 7999999999999999999999999999999853 355555543 55899999998 47899999999999999
Q ss_pred CcCCcceEeee--cCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-c--eEEEccCCCcEEEEEECCCCCcEEEE
Q 011971 277 IRAQEDFVSKL--SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ-P--VLKYCEHTAAVKAIAWSPHLHGLLAS 351 (474)
Q Consensus 277 ~~~~~~~~~~~--~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~-~--~~~~~~h~~~V~~l~~sp~~~~ll~s 351 (474)
+.+.+. +..+ ....+.|+.+..+|-.+.|++.+.++.|.+||.+... + .............+.|+|....|+++
T Consensus 134 iEt~qs-i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~ 212 (609)
T KOG4227|consen 134 IETKQS-IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV 212 (609)
T ss_pred ccccee-eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence 998763 3222 2334589999999999999999999999999998754 2 22333456678899999999999998
Q ss_pred ecCCCCCeEEEEECCCCce-----------------------------ee---------------------eecCC----
Q 011971 352 GGGTADRCIRFWNTTTNTH-----------------------------LS---------------------CMDTG---- 377 (474)
Q Consensus 352 g~Gt~d~~I~iwd~~~~~~-----------------------------~~---------------------~~~~~---- 377 (474)
.. ..+-+-+||.+.... +. ..++.
T Consensus 213 ~~--~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY 290 (609)
T KOG4227|consen 213 NS--ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGY 290 (609)
T ss_pred cc--ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcc
Confidence 76 677788999874210 00 00000
Q ss_pred ---CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC-----------------------ceeEEEcCCCccEEEEEECC
Q 011971 378 ---SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM-----------------------SKLATLTGHTFRVLYLAISP 431 (474)
Q Consensus 378 ---~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-----------------------~~~~~l~~h~~~V~~l~~sp 431 (474)
..+.+++|..+.. +++ |+.+-.|++|.++.. +.+..++||..-+..+.|+|
T Consensus 291 ~N~~T~KS~~F~~D~~-v~t--GSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~ 367 (609)
T KOG4227|consen 291 CNIKTIKSMTFIDDYT-VAT--GSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ 367 (609)
T ss_pred eeeeeeeeeeeeccee-eec--cCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC
Confidence 0122333433332 444 888889999998631 22456789999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCC
Q 011971 432 DGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 432 dg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
...+|++.+-...+++|.-...+
T Consensus 368 H~~~l~SSGVE~~~KlWS~~r~P 390 (609)
T KOG4227|consen 368 HNNLLVSSGVENSFKLWSDHRLP 390 (609)
T ss_pred CcceEeccchhhheeccccccCC
Confidence 99999999999999999765544
No 179
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=5.8e-15 Score=137.78 Aligned_cols=273 Identities=16% Similarity=0.217 Sum_probs=204.0
Q ss_pred eeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC--cEEEecCCCCeEEEEe
Q 011971 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG--KVQIWDASRCKRVRTM 246 (474)
Q Consensus 170 v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg--~I~iwd~~~~~~~~~~ 246 (474)
++.+.|+. ..+|++|.....++|+.+........ ......|..+-|+ ..++|..+.+. .+++++......+..+
T Consensus 8 i~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~-~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~ 84 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSK-DTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEI 84 (391)
T ss_pred eeeeeeccceeEEEccCCCceeEEecCchHHhhcc-cCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEEEE
Confidence 56666887 67899999888889987754431111 1123345556665 45676666543 4899998888877777
Q ss_pred cCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeee---cCcCCCEEEEEEecCCCEEEEEe--CCCcEEEEECC
Q 011971 247 EGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKL---SGHKSEVCGLKWSYDNRELASGG--NDNRLFVWNQH 321 (474)
Q Consensus 247 ~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~spd~~~lasg~--~Dg~v~iwd~~ 321 (474)
. ....|.++.++.+.|++.-.+. |+|||++.-+ .+.++ ..+...++++.++..+.+||.-+ ..|.|.+||+.
T Consensus 85 ~-fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~Mk-lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~ 161 (391)
T KOG2110|consen 85 F-FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMK-LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI 161 (391)
T ss_pred e-cCCceEEEEEccceEEEEEccc-EEEEecccce-eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcc
Confidence 6 5668999999998888887776 9999999866 34433 34667789988888888998643 46899999999
Q ss_pred CCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCe-EEEEECCCCceeeeecCC---CCeEEEEEcCCCCeEEEEEe
Q 011971 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC-IRFWNTTTNTHLSCMDTG---SQVCNLVWSKNVNELVSTHG 397 (474)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~-I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~~~g 397 (474)
+-+++..+..|.+.+.+++|+++|. ++|+++ +.|+ ||++.+.+|+.+.++..+ ..|.+++|++++.+|.+ .
T Consensus 162 nl~~v~~I~aH~~~lAalafs~~G~-llATAS--eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~--s 236 (391)
T KOG2110|consen 162 NLQPVNTINAHKGPLAALAFSPDGT-LLATAS--EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA--S 236 (391)
T ss_pred cceeeeEEEecCCceeEEEECCCCC-EEEEec--cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE--e
Confidence 9999999999999999999999997 888876 5555 899999999999999865 45899999999999998 5
Q ss_pred cCCCeEEEEECCCCc-------------------------------------eeEEEcCCCccE-EEEEEC--CCCCEEE
Q 011971 398 YSQNQIIVWRYPTMS-------------------------------------KLATLTGHTFRV-LYLAIS--PDGQTIV 437 (474)
Q Consensus 398 ~~dg~I~iwd~~~~~-------------------------------------~~~~l~~h~~~V-~~l~~s--pdg~~l~ 437 (474)
++.++|+||++..-. ..+..+...... ..+.+. +...++.
T Consensus 237 S~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~ 316 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVL 316 (391)
T ss_pred cCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEE
Confidence 688999999985311 001111111111 223333 4677899
Q ss_pred EEeCCCcEEEEeCCCC
Q 011971 438 TGAGDETLRFWNVFPS 453 (474)
Q Consensus 438 t~s~Dg~I~iW~l~~~ 453 (474)
.++.||.++.|.+...
T Consensus 317 vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 317 VASYDGHLYSYRLPPK 332 (391)
T ss_pred EEEcCCeEEEEEcCCC
Confidence 9999999999999875
No 180
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.76 E-value=9.9e-17 Score=163.68 Aligned_cols=249 Identities=16% Similarity=0.285 Sum_probs=186.5
Q ss_pred CCCcccccCCCCCCCcceeeeeCCC--CcEEEEEc-CCeEEEEeCCCCCEE-----EEEecCCCCCEEEEEEcCCCC--E
Q 011971 153 RSPYKILDAPALQDDFYLNLVDWSS--HNVLAVGL-GNCVYLWNACSSKVT-----KLCDLGIDDSVCSVGWANRNT--H 222 (474)
Q Consensus 153 ~~p~~~l~ap~~~~d~~v~~l~~s~--~~~la~~~-d~~V~lwd~~~~~~~-----~~~~~~~~~~V~~v~~sp~g~--~ 222 (474)
..|..+++.+. .+.|+.+++ .+++++|. +|.|.+||...+... ......|..+|+.+.|..+.. -
T Consensus 233 ~~Pe~~~~~~s-----~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~ 307 (555)
T KOG1587|consen 233 NTPELVLESPS-----EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTE 307 (555)
T ss_pred CCceEEEecCC-----ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCc
Confidence 45666666643 378888887 56677765 899999999876652 222337899999999987554 4
Q ss_pred EEEEeCCCcEEEecCCCCeEE------EEec------CCCCcEEEEEec---CCEEEEEeCCCcEEEEECc---CCc---
Q 011971 223 LAVGTSHGKVQIWDASRCKRV------RTME------GHRLRVGALAWS---SSLLSSGSRDKSILQRDIR---AQE--- 281 (474)
Q Consensus 223 la~gs~dg~I~iwd~~~~~~~------~~~~------~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~---~~~--- 281 (474)
+++++.||.|..|++...... .... .....++++.|. +..++.|+.+|.|..-+-. ...
T Consensus 308 f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~ 387 (555)
T KOG1587|consen 308 FFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVS 387 (555)
T ss_pred eEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccc
Confidence 999999999999987643221 0111 223467888886 6899999999999873322 222
Q ss_pred -ceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECC-CCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCe
Q 011971 282 -DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH-STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC 359 (474)
Q Consensus 282 -~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~-~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~ 359 (474)
.....+..|.+.|.++.++|=+..++..+.|-+|+||... ...++..+..+...|.+++|||....+++++. .||.
T Consensus 388 ~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d--~~G~ 465 (555)
T KOG1587|consen 388 YKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD--GDGN 465 (555)
T ss_pred ccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc--CCCc
Confidence 1233556788999999999966555444449999999988 77888888888888999999999999999986 7999
Q ss_pred EEEEECCCCc--eeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011971 360 IRFWNTTTNT--HLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (474)
Q Consensus 360 I~iwd~~~~~--~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 410 (474)
|.+||+.... ++.... .....+.+.|+++|+.|++ |...|.+.+|++..
T Consensus 466 l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lav--Gd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 466 LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAV--GDANGTTHILKLSE 517 (555)
T ss_pred eehhhhhccccCCcccccccccccceeecCCCCcEEEE--ecCCCcEEEEEcCc
Confidence 9999987543 333333 2445677888999999999 99999999999853
No 181
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.76 E-value=3.9e-17 Score=147.44 Aligned_cols=195 Identities=25% Similarity=0.343 Sum_probs=161.3
Q ss_pred ceeeeeCCC-CcEEEEEcCCeEEEEeCCCCCE-EEEEe----cCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEecCCCC
Q 011971 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKV-TKLCD----LGIDDSVCSVGWAN--RNTHLAVGTSHGKVQIWDASRC 240 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~-~~~~~----~~~~~~V~~v~~sp--~g~~la~gs~dg~I~iwd~~~~ 240 (474)
.++|+.|.| +.-+++-.++.|.+|++..+.. ...+. .++....++-+|+| +|+.+++. .|++++.||+.+.
T Consensus 125 ~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTM 203 (370)
T ss_pred ceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccch
Confidence 589999999 5666777799999999987755 22222 14456788899998 77888766 4889999999988
Q ss_pred eEEEEec-CCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecC-CCEEEEEeCCCcE
Q 011971 241 KRVRTME-GHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD-NRELASGGNDNRL 315 (474)
Q Consensus 241 ~~~~~~~-~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-~~~lasg~~Dg~v 315 (474)
++...+. .|...|..+.|++ .+|++++.||.|++||.+..+.++..+.+|...|.++.|+|. .+++++|+.|..|
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAV 283 (370)
T ss_pred hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCcee
Confidence 8777765 6999999999996 589999999999999999998899999999999999999994 5678899999999
Q ss_pred EEEECCCC-----------------------------cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECC
Q 011971 316 FVWNQHST-----------------------------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (474)
Q Consensus 316 ~iwd~~~~-----------------------------~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~ 366 (474)
.+|....- ..+.++..|...|++++|+.-.+.++|+-+ .||.+.|=.+.
T Consensus 284 ~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS--YDGRviIs~V~ 361 (370)
T KOG1007|consen 284 NLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS--YDGRVIISSVP 361 (370)
T ss_pred EEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec--cCceEEeecCC
Confidence 99975320 123467789999999999999999999987 89998876554
No 182
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=1.8e-15 Score=141.21 Aligned_cols=238 Identities=14% Similarity=0.232 Sum_probs=185.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecCCEEEEEeCCCc--EEEEECcCCcceEe
Q 011971 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKS--ILQRDIRAQEDFVS 285 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~--I~iwd~~~~~~~~~ 285 (474)
...+..+.|..+...|.+|+.|| .++|..+..............|..+-|+..+++..+.+.. +++++.+.......
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe 83 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICE 83 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEE
Confidence 44677788999999999999998 6888877655544444455678888899988887776644 88888876653222
Q ss_pred eecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEcc---CCCcEEEEEECCCCCcEEEEecCCCCCeEEE
Q 011971 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE---HTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (474)
Q Consensus 286 ~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~---h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~i 362 (474)
. ....+|.++.++. +.|+++-.+. |+|||+++.+.++++.. +...+.++..++.+.++..=+ .+..|.|.+
T Consensus 84 ~--~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~-s~t~GdV~l 157 (391)
T KOG2110|consen 84 I--FFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPG-STTSGDVVL 157 (391)
T ss_pred E--ecCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecC-CCCCceEEE
Confidence 2 2456688888864 4677766654 99999999999988864 344566666666655555544 356799999
Q ss_pred EECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCC-eEEEEECCCCceeEEEcCC--CccEEEEEECCCCCEEEE
Q 011971 363 WNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQN-QIIVWRYPTMSKLATLTGH--TFRVLYLAISPDGQTIVT 438 (474)
Q Consensus 363 wd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg-~I~iwd~~~~~~~~~l~~h--~~~V~~l~~spdg~~l~t 438 (474)
||+.+-+.+..+. |.+.+.+++|+++|..|++ +++.| .|+||.+++++.+.+|... ...|.+++|+||+++|++
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llAT--ASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLAT--ASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECCCCCEEEE--eccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence 9999998888887 7788999999999999999 55666 5799999999999999743 346889999999999999
Q ss_pred EeCCCcEEEEeCCCCC
Q 011971 439 GAGDETLRFWNVFPSP 454 (474)
Q Consensus 439 ~s~Dg~I~iW~l~~~~ 454 (474)
.+..++|++|++....
T Consensus 236 sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKVS 251 (391)
T ss_pred ecCCCeEEEEEecccc
Confidence 9999999999998776
No 183
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.1e-16 Score=147.70 Aligned_cols=228 Identities=18% Similarity=0.262 Sum_probs=173.9
Q ss_pred CEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec----CCEEEEEeCCCcEEEEECcCCcce-EeeecCcC-CCE
Q 011971 221 THLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQRDIRAQEDF-VSKLSGHK-SEV 294 (474)
Q Consensus 221 ~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~-~~~~~~h~-~~V 294 (474)
..+|++..+|.|++||..+++.+..++++...+..+.|. ++.+.+++.||+|++||+|...+. .....++. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 578999999999999999999999999999999999985 589999999999999999986643 33445555 466
Q ss_pred EEEEEecCCCEEEEEeC----CCcEEEEECCCCcc-eEEE-ccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011971 295 CGLKWSYDNRELASGGN----DNRLFVWNQHSTQP-VLKY-CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368 (474)
Q Consensus 295 ~~l~~spd~~~lasg~~----Dg~v~iwd~~~~~~-~~~~-~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~ 368 (474)
.+++.+..++.+++|.. |-.|.+||++..+. +..+ ..|...|+++.|+|....+|++|+ .||-|.+||+...
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS--vDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS--VDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec--ccceEEeeecCCC
Confidence 77777777888888864 66799999998765 4444 469999999999999999999987 9999999999764
Q ss_pred ----ceeeeecCCCCeEEEEEcCCC-CeEEEEEecCCCeEEEEECCCCceeEEEcCCC------------ccEEEEEECC
Q 011971 369 ----THLSCMDTGSQVCNLVWSKNV-NELVSTHGYSQNQIIVWRYPTMSKLATLTGHT------------FRVLYLAISP 431 (474)
Q Consensus 369 ----~~~~~~~~~~~v~~l~~s~~~-~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~------------~~V~~l~~sp 431 (474)
.++..+.+++.|..+.|..++ +.+.+ -+......+|+++.+.....+.... ..+.......
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~c--lTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~ 276 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMC--LTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPG 276 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecCCcceEEE--EEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCC
Confidence 346677788999999999888 23444 3367889999999887655443210 1122222223
Q ss_pred CCCEEEEEeC-CCcEEEEeCCC
Q 011971 432 DGQTIVTGAG-DETLRFWNVFP 452 (474)
Q Consensus 432 dg~~l~t~s~-Dg~I~iW~l~~ 452 (474)
++.+++.++. -+...++-+..
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~~ 298 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLVD 298 (376)
T ss_pred CcceEEEeccccCceeEEEeee
Confidence 5556666655 56677666653
No 184
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.75 E-value=7.5e-17 Score=148.03 Aligned_cols=243 Identities=16% Similarity=0.298 Sum_probs=180.4
Q ss_pred cCCCCCEEEEEEcC----C-CCEEEEEeCCCcEEEecCCCCeE---EEEec--CCCCcEEEEEec------CCEEEEEeC
Q 011971 205 LGIDDSVCSVGWAN----R-NTHLAVGTSHGKVQIWDASRCKR---VRTME--GHRLRVGALAWS------SSLLSSGSR 268 (474)
Q Consensus 205 ~~~~~~V~~v~~sp----~-g~~la~gs~dg~I~iwd~~~~~~---~~~~~--~h~~~V~~l~~~------~~~l~sgs~ 268 (474)
.+|+.+|..++|.+ + -..+|+.+ ...+.+|......- +..+. .|......++|. ..++++|+.
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 37788999999984 2 23455554 45789998765433 33332 478888899995 358899999
Q ss_pred CCcEEEEECcCCcceEeeecCcCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCcceEEEc---cCCCcEEEEEECCC
Q 011971 269 DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN-RELASGGNDNRLFVWNQHSTQPVLKYC---EHTAAVKAIAWSPH 344 (474)
Q Consensus 269 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~-~~lasg~~Dg~v~iwd~~~~~~~~~~~---~h~~~V~~l~~sp~ 344 (474)
-|.|+|.|+.+.+ +...+.+|...|+.|.++|+. +++++++.|..|++|++++..++..|- +|...|.++.|+++
T Consensus 114 ~GvIrVid~~~~~-~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~ 192 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQ-CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD 192 (385)
T ss_pred eeEEEEEecchhh-hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence 9999999998877 688899999999999999965 788999999999999999999988875 59999999999999
Q ss_pred CCcEEEEecCCCCCeEEEEECCCCceeeeec-----------------------------CCCCeEEEEEcCCCCeEEEE
Q 011971 345 LHGLLASGGGTADRCIRFWNTTTNTHLSCMD-----------------------------TGSQVCNLVWSKNVNELVST 395 (474)
Q Consensus 345 ~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-----------------------------~~~~v~~l~~s~~~~~l~~~ 395 (474)
+.. ++++| .|..|++|++...+....++ |...|.|+.|- |+++++
T Consensus 193 gd~-i~ScG--mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilS- 266 (385)
T KOG1034|consen 193 GDR-IASCG--MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILS- 266 (385)
T ss_pred CCe-eeccC--CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheee-
Confidence 994 55554 89999999998433211111 12223344443 456666
Q ss_pred EecCCCeEEEEECCCC--------------ceeEEEcCCCccEEEEEEC--CCCCEEEEEeCCCcEEEEeCCCCCCC
Q 011971 396 HGYSQNQIIVWRYPTM--------------SKLATLTGHTFRVLYLAIS--PDGQTIVTGAGDETLRFWNVFPSPKS 456 (474)
Q Consensus 396 ~g~~dg~I~iwd~~~~--------------~~~~~l~~h~~~V~~l~~s--pdg~~l~t~s~Dg~I~iW~l~~~~~~ 456 (474)
-+-+|.|..|..... ..+.++.-....|+.+.|+ |-++.||.|...|.|++||+...+..
T Consensus 267 -kscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 267 -KSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred -cccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence 557889999987211 1233444445566666554 55789999999999999999987764
No 185
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=1.9e-17 Score=167.70 Aligned_cols=279 Identities=15% Similarity=0.193 Sum_probs=214.3
Q ss_pred eeeeeCCC--CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec
Q 011971 170 LNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (474)
Q Consensus 170 v~~l~~s~--~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~ 247 (474)
|.|+.+.. .++++++.|..|+||..+++.....+. ||.+.|+.++.+.+..++|+++.|..|++|.+.++..+..+.
T Consensus 193 Vyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLr 271 (1113)
T KOG0644|consen 193 VYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLR 271 (1113)
T ss_pred eeeeeeccccceEeecCccceeeeeeccchhhhccCC-CCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHh
Confidence 44555554 567777778899999999998888775 999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEecCCEEEEEeCCCcEEEEECcC-CcceE-eee-cCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011971 248 GHRLRVGALAWSSSLLSSGSRDKSILQRDIRA-QEDFV-SKL-SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (474)
Q Consensus 248 ~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~-~~~~~-~~~-~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~ 324 (474)
+|++.|++++|+|.. +.+.||++++||.+- ....+ ..+ ......++++.|...+..+++|+.|+.-..|......
T Consensus 272 ghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~ 349 (1113)
T KOG0644|consen 272 GHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA 349 (1113)
T ss_pred ccccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh
Confidence 999999999999865 888999999999982 11100 001 1233568888888889999999999998888764321
Q ss_pred ceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeE
Q 011971 325 PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQI 403 (474)
Q Consensus 325 ~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I 403 (474)
.+...+.-+..+.+-..+.++.- .+-.+.+|++.+|..++... +...+..+.++|-...++.. .+.||.+
T Consensus 350 ------~~~~~lif~t~ssd~~~~~~~ar--~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms-ag~dgst 420 (1113)
T KOG0644|consen 350 ------WRSNLLIFVTRSSDLSSIVVTAR--NDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS-AGYDGST 420 (1113)
T ss_pred ------hhccceEEEeccccccccceeee--eeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh-ccCCCce
Confidence 12222222223323333444443 57889999999998887765 45668889999988777766 4589999
Q ss_pred EEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCCCC
Q 011971 404 IVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTD 460 (474)
Q Consensus 404 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~~ 460 (474)
.|||+-.+.++..+....+.+...+||+||..++....-|.++|.....+.......
T Consensus 421 ~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak 477 (1113)
T KOG0644|consen 421 IIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAK 477 (1113)
T ss_pred EeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccccccc
Confidence 999999988877665445667788999999999988888999999887766554443
No 186
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=7.3e-16 Score=157.26 Aligned_cols=229 Identities=17% Similarity=0.097 Sum_probs=162.7
Q ss_pred CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEecCCCCeE--EEEecCCCCcEEEEEecC-
Q 011971 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH---GKVQIWDASRCKR--VRTMEGHRLRVGALAWSS- 260 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d---g~I~iwd~~~~~~--~~~~~~h~~~V~~l~~~~- 260 (474)
..|++||........+. .+...+.+++|+|||+.|+.++.+ ..|.+||+.+++. +..+.+| ...++|++
T Consensus 184 ~~i~i~d~dg~~~~~lt--~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 184 YEVRVADYDGFNQFIVN--RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred EEEEEECCCCCCceEec--cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 58999999776643332 567789999999999999987653 3699999988753 3334444 34678985
Q ss_pred -CEEEEE-eCCCcEEEE--ECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEe-CCCcEEEEECCCC-cceEEEccCCC
Q 011971 261 -SLLSSG-SRDKSILQR--DIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG-NDNRLFVWNQHST-QPVLKYCEHTA 334 (474)
Q Consensus 261 -~~l~sg-s~dg~I~iw--d~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~-~Dg~v~iwd~~~~-~~~~~~~~h~~ 334 (474)
+.|+.+ +.+|.+.|| |+.++. ...+..+...+....|+|||+.|+.++ .++...||++... .....+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~ 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC
Confidence 566655 468876665 554443 455666777788999999999877665 5677888876432 222233 3433
Q ss_pred cEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC--CCCc
Q 011971 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY--PTMS 412 (474)
Q Consensus 335 ~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~--~~~~ 412 (474)
....|+|+++.+++++ .++ +.+||+.+++....... .....+.|+|+|+.++. +..++.+.+|.+ .++.
T Consensus 336 --~~~~~SpDG~~ia~~~---~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~--~s~~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 336 --YSAQISADGKTLVMIN---GDN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIY--SSTQGLGKVLQLVSADGR 406 (429)
T ss_pred --CCccCCCCCCEEEEEc---CCC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEE--EEcCCCceEEEEEECCCC
Confidence 4678999999776664 244 66699998875433222 23456789999999999 446787777775 3677
Q ss_pred eeEEEcCCCccEEEEEECCC
Q 011971 413 KLATLTGHTFRVLYLAISPD 432 (474)
Q Consensus 413 ~~~~l~~h~~~V~~l~~spd 432 (474)
.+..+.+|.+.+...+|+|-
T Consensus 407 ~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 407 FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ceEEccCCCCCCCCcccCCC
Confidence 88888889888999999984
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.4e-14 Score=128.06 Aligned_cols=263 Identities=15% Similarity=0.175 Sum_probs=183.2
Q ss_pred eeeCCC-CcEEEEE-cCCeEEEEeCCC---------CCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC
Q 011971 172 LVDWSS-HNVLAVG-LGNCVYLWNACS---------SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC 240 (474)
Q Consensus 172 ~l~~s~-~~~la~~-~d~~V~lwd~~~---------~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~ 240 (474)
.-+|+| .+++++| .+|.|.+..+.+ ++..-+....|+++|..++|. ..+|++|+ ||.|+-|.....
T Consensus 15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~ 91 (325)
T KOG0649|consen 15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEE 91 (325)
T ss_pred HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhh
Confidence 346777 5666665 589999998753 232222224899999999998 45677766 599999876432
Q ss_pred eE------EEEe--cCCC-----CcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCE
Q 011971 241 KR------VRTM--EGHR-----LRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305 (474)
Q Consensus 241 ~~------~~~~--~~h~-----~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 305 (474)
.. +... .-|. ..|++|...| +-++.++.|+.++.||++++. ....+.+|+..|.++.--.....
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~-i~r~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR-IQREYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE-EEEEEcCCcceeeeeeecccCcc
Confidence 11 1111 1122 3567777663 566667799999999999987 68899999999999998666678
Q ss_pred EEEEeCCCcEEEEECCCCcceEEEcc---------C-CCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec
Q 011971 306 LASGGNDNRLFVWNQHSTQPVLKYCE---------H-TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (474)
Q Consensus 306 lasg~~Dg~v~iwd~~~~~~~~~~~~---------h-~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~ 375 (474)
+++|++||+++|||.++++.+..+.. | ...|.+++-+.+ .+++|+ ...+.+|+++..++...+.
T Consensus 171 ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGg---Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGG---GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecC---CCceeEEeccCCCceEEEe
Confidence 99999999999999999998887642 2 234677777655 666665 5789999999999999999
Q ss_pred CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCC-EEEEEeCCCcEEEEe
Q 011971 376 TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQ-TIVTGAGDETLRFWN 449 (474)
Q Consensus 376 ~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~t~s~Dg~I~iW~ 449 (474)
....+..+.|..+ .+++ ++..+.|.-|.+. +..-..........++..|+-.-- +|-.++....+.++.
T Consensus 245 ipa~v~~v~F~~d--~vl~--~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 245 IPARVHLVDFVDD--CVLI--GGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred cccceeEeeeecc--eEEE--eccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 9999999988754 3444 5567788888774 333333333333345555554333 344445555666553
No 188
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.71 E-value=1.2e-16 Score=157.46 Aligned_cols=225 Identities=20% Similarity=0.336 Sum_probs=166.8
Q ss_pred EcCCeEEEEeCCCC-CEEEE-E-ecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEecCCCC-------eEEEEecCCCCc
Q 011971 184 GLGNCVYLWNACSS-KVTKL-C-DLGIDDSVCSVGWAN-RNTHLAVGTSHGKVQIWDASRC-------KRVRTMEGHRLR 252 (474)
Q Consensus 184 ~~d~~V~lwd~~~~-~~~~~-~-~~~~~~~V~~v~~sp-~g~~la~gs~dg~I~iwd~~~~-------~~~~~~~~h~~~ 252 (474)
|.+|.|-||++..- ++..- + .+-....|+.+.|.| |...||+++.||.|++|.+..+ .....+..|...
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK 679 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK 679 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce
Confidence 44789999998642 22111 0 112356899999999 6689999999999999998654 345667899999
Q ss_pred EEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-ceEE
Q 011971 253 VGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ-PVLK 328 (474)
Q Consensus 253 V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~-~~~~ 328 (474)
|+++.|++ +.|++++.|-+|.+||+++.. ....+.+|++.|.+++|+|+|+.+|+.+.||+|+||+.+.++ +++.
T Consensus 680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~E 758 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVASYDSTIELWDLANAK-LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYE 758 (1012)
T ss_pred EEEEEecchhhhHhhhhhccceeeeeehhhhh-hhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcccc
Confidence 99999996 899999999999999999887 467789999999999999999999999999999999988764 3433
Q ss_pred EccC-CCcEEEEEECCCCCcEEEEecC-CCCCeEEEEECCCC--ceeee--ecCCCCeEEEEEcCCCCeEEEEEecCCCe
Q 011971 329 YCEH-TAAVKAIAWSPHLHGLLASGGG-TADRCIRFWNTTTN--THLSC--MDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402 (474)
Q Consensus 329 ~~~h-~~~V~~l~~sp~~~~ll~sg~G-t~d~~I~iwd~~~~--~~~~~--~~~~~~v~~l~~s~~~~~l~~~~g~~dg~ 402 (474)
-.+. ...--.|.|.-+|+.++++|-. ...+.|.+||..+- ..+.+ ++....+.--.+.+|.+.|+.+ |-.|..
T Consensus 759 g~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lflt-GKGD~~ 837 (1012)
T KOG1445|consen 759 GKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLT-GKGDRF 837 (1012)
T ss_pred CCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEe-cCCCce
Confidence 3221 1233467888899988888731 12356888987653 23332 2222233333466777776665 888999
Q ss_pred EEEEECCC
Q 011971 403 IIVWRYPT 410 (474)
Q Consensus 403 I~iwd~~~ 410 (474)
|.+|.+-.
T Consensus 838 v~~yEv~~ 845 (1012)
T KOG1445|consen 838 VNMYEVIY 845 (1012)
T ss_pred EEEEEecC
Confidence 99998743
No 189
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=3.5e-16 Score=152.94 Aligned_cols=249 Identities=16% Similarity=0.188 Sum_probs=180.8
Q ss_pred ceeeeeCCC--CcEEEEEcCCeEEEEeCC------CCCEEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCC
Q 011971 169 YLNLVDWSS--HNVLAVGLGNCVYLWNAC------SSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR 239 (474)
Q Consensus 169 ~v~~l~~s~--~~~la~~~d~~V~lwd~~------~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~ 239 (474)
.+..+.+.+ ..+++++.++.+.+|+++ ...+..++.+ +|.++|.|++..+++.++++|+-||+|+.|++..
T Consensus 296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~ 375 (577)
T KOG0642|consen 296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPP 375 (577)
T ss_pred hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCC
Confidence 356666666 567788889999999993 2344555555 8999999999999999999999999999996531
Q ss_pred ----------CeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCC-CEE
Q 011971 240 ----------CKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN-REL 306 (474)
Q Consensus 240 ----------~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~-~~l 306 (474)
......+.||...|+.++++ .+.|++++.||++++|+......+........+...++.+-... .+.
T Consensus 376 n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~ 455 (577)
T KOG0642|consen 376 NQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHS 455 (577)
T ss_pred CCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhh
Confidence 12445678999999999998 47899999999999999876653222111222333455553322 223
Q ss_pred EEEeCCCcEEEEECCCCcceEEEcc-------CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCC
Q 011971 307 ASGGNDNRLFVWNQHSTQPVLKYCE-------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGS 378 (474)
Q Consensus 307 asg~~Dg~v~iwd~~~~~~~~~~~~-------h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~ 378 (474)
++...-+.-.+++......+..+.. ....+.-+.++|.+. +..++. .|+.|+++|..++..+.... +..
T Consensus 456 ~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~h--ed~~Ir~~dn~~~~~l~s~~a~~~ 532 (577)
T KOG0642|consen 456 LASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAH--EDRSIRFFDNKTGKILHSMVAHKD 532 (577)
T ss_pred hhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-eeEecc--cCCceecccccccccchheeeccc
Confidence 3333333334444444444444432 124577889999886 555554 89999999999999887665 667
Q ss_pred CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCc
Q 011971 379 QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTF 422 (474)
Q Consensus 379 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~ 422 (474)
.++++++.|+|-+|++ |..|+.+++|.+....++.....|..
T Consensus 533 svtslai~~ng~~l~s--~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 533 SVTSLAIDPNGPYLMS--GSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred eecceeecCCCceEEe--ecCCceeehhhccchheeeccccccc
Confidence 8999999999999999 89999999999988888777766643
No 190
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2e-14 Score=147.43 Aligned_cols=274 Identities=14% Similarity=0.207 Sum_probs=193.3
Q ss_pred eeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEE----ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCC----Ce
Q 011971 171 NLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLC----DLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR----CK 241 (474)
Q Consensus 171 ~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~----~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~----~~ 241 (474)
.++..++ +.+..+..+..+++|+...+. .... ...|...++|.+++|.++++|+|..||.|.+|.--. ..
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~ 242 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE 242 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence 4455555 788888889999999998755 2221 225667799999999999999999999999996432 12
Q ss_pred EEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011971 242 RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319 (474)
Q Consensus 242 ~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd 319 (474)
..+.+.-|...|++++|+ +.+|++|+..|.+.+|.+.+++ .+.+..-.+.|..+.++||+.+.+....|+.|.+..
T Consensus 243 t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~ 320 (792)
T KOG1963|consen 243 TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIK 320 (792)
T ss_pred cceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEe
Confidence 345567799999999997 6899999999999999999877 344555678899999999999999999999999998
Q ss_pred CCCCcceEEEcc-----------CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-------------
Q 011971 320 QHSTQPVLKYCE-----------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD------------- 375 (474)
Q Consensus 320 ~~~~~~~~~~~~-----------h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~------------- 375 (474)
..+.....++.+ ..+-.+.++++|--+.++..| ..+.|.+||+.+.+.+..+.
T Consensus 321 ~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~---~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~ 397 (792)
T KOG1963|consen 321 ASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG---HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNI 397 (792)
T ss_pred ccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecC---CCceEEEEeccccceeeeEEEEeecccCCccee
Confidence 765543333321 234456777888444444443 67788888776544332221
Q ss_pred --------------------------------------------------------CCCCeEEEEEcC-CCC-eEEEEEe
Q 011971 376 --------------------------------------------------------TGSQVCNLVWSK-NVN-ELVSTHG 397 (474)
Q Consensus 376 --------------------------------------------------------~~~~v~~l~~s~-~~~-~l~~~~g 397 (474)
|+..+...++.+ ... ..++ .
T Consensus 398 ~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vt--a 475 (792)
T KOG1963|consen 398 QVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVT--A 475 (792)
T ss_pred EEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEE--e
Confidence 111111222222 112 2333 5
Q ss_pred cCCCeEEEEECCCC----------ceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 011971 398 YSQNQIIVWRYPTM----------SKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 398 ~~dg~I~iwd~~~~----------~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~ 453 (474)
+.||.++||-+... .+...-.-|..++..++|+.||. +++.+.|++|.+||..+.
T Consensus 476 ~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 476 SVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred ccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEEecCCCh
Confidence 68999999988321 22222223788999999999995 556678889999999884
No 191
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.4e-16 Score=152.22 Aligned_cols=208 Identities=18% Similarity=0.322 Sum_probs=164.2
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec-CCCCcEEEEEecC----CEEEEEeCCCcEEEEECcCC
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME-GHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQ 280 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~ 280 (474)
||.+.|.|++|+.+|.+|++|+.|-.+.|||.-..+++..+. +|.+.|.++.|-| .++++|..|..|+++|+...
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence 899999999999999999999999999999998888887774 8999999999963 68999999999999999852
Q ss_pred ---------cceEeeecCcCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCcc----------eEEEccCCCcEEEEE
Q 011971 281 ---------EDFVSKLSGHKSEVCGLKWSYDN-RELASGGNDNRLFVWNQHSTQP----------VLKYCEHTAAVKAIA 340 (474)
Q Consensus 281 ---------~~~~~~~~~h~~~V~~l~~spd~-~~lasg~~Dg~v~iwd~~~~~~----------~~~~~~h~~~V~~l~ 340 (474)
......+..|...|..|+-.|++ ..+.++++||+|+-+|++.... +..+...--..+++.
T Consensus 128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~lt 207 (758)
T KOG1310|consen 128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLT 207 (758)
T ss_pred cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeee
Confidence 22345567799999999999988 8899999999999999986321 111112234678999
Q ss_pred ECCCCCcEEEEecCCCCCeEEEEECCC--------Cc----------eeeeecCC-------------CCeEEEEEcCCC
Q 011971 341 WSPHLHGLLASGGGTADRCIRFWNTTT--------NT----------HLSCMDTG-------------SQVCNLVWSKNV 389 (474)
Q Consensus 341 ~sp~~~~ll~sg~Gt~d~~I~iwd~~~--------~~----------~~~~~~~~-------------~~v~~l~~s~~~ 389 (474)
++|...++|+.|+ .|-..++||.+. +. ++..+..+ ..++-+.|+|+|
T Consensus 208 isp~rp~~laVGg--sdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNG 285 (758)
T KOG1310|consen 208 ISPSRPYYLAVGG--SDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNG 285 (758)
T ss_pred ecCCCCceEEecC--CCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCC
Confidence 9999999999987 899999999432 11 12211100 114568899999
Q ss_pred CeEEEEEecCCCeEEEEECCCCceeEEE
Q 011971 390 NELVSTHGYSQNQIIVWRYPTMSKLATL 417 (474)
Q Consensus 390 ~~l~~~~g~~dg~I~iwd~~~~~~~~~l 417 (474)
.+|++ ......|+++|+...+....+
T Consensus 286 tElLv--s~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 286 TELLV--SWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred cEEEE--eeCCeEEEEEeecCCCCceee
Confidence 99999 566779999999877654443
No 192
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.69 E-value=2.6e-15 Score=141.52 Aligned_cols=238 Identities=22% Similarity=0.340 Sum_probs=170.2
Q ss_pred eeeeeCCC--C-cEEEEEcCCeEEEEeCCCCC-------EEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCC
Q 011971 170 LNLVDWSS--H-NVLAVGLGNCVYLWNACSSK-------VTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS 238 (474)
Q Consensus 170 v~~l~~s~--~-~~la~~~d~~V~lwd~~~~~-------~~~~~~~-~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~ 238 (474)
+..+++.. . .+.++|.|..|+||.+..++ +.-+-.+ .|...|+++.|+|+|+.||+|+.+|.|.+|-..
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~ 95 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQG 95 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEec
Confidence 45555554 3 45566678999999876432 2222223 789999999999999999999999999999765
Q ss_pred --------C--------CeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEe
Q 011971 239 --------R--------CKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWS 300 (474)
Q Consensus 239 --------~--------~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 300 (474)
+ -.....+.+|...|..++|.+ ..+++|+.|..+++||+..+. ....+..|...|..++|.
T Consensus 96 ~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~-l~~~~~dh~~yvqgvawD 174 (434)
T KOG1009|consen 96 DVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ-LLAILDDHEHYVQGVAWD 174 (434)
T ss_pred CcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce-eEeeccccccccceeecc
Confidence 2 234456778999999999984 789999999999999999987 678888999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCcceEEEc-------------------cCC----CcEEEEEECCCCCc----------
Q 011971 301 YDNRELASGGNDNRLFVWNQHSTQPVLKYC-------------------EHT----AAVKAIAWSPHLHG---------- 347 (474)
Q Consensus 301 pd~~~lasg~~Dg~v~iwd~~~~~~~~~~~-------------------~h~----~~V~~l~~sp~~~~---------- 347 (474)
|-++++++-+.|...+++.+...+.++... -|. .-...++|+|+|..
T Consensus 175 pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~ 254 (434)
T KOG1009|consen 175 PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKV 254 (434)
T ss_pred hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeee
Confidence 998888888887766666543221111100 000 11223344444431
Q ss_pred -----------------------------------------------------------EEEEecCCCCCeEEEEECCCC
Q 011971 348 -----------------------------------------------------------LLASGGGTADRCIRFWNTTTN 368 (474)
Q Consensus 348 -----------------------------------------------------------ll~sg~Gt~d~~I~iwd~~~~ 368 (474)
+++.+ ....+.+||..+-
T Consensus 255 g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA---t~~svyvydtq~~ 331 (434)
T KOG1009|consen 255 GGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA---TKNSVYVYDTQTL 331 (434)
T ss_pred CCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe---ecceEEEeccccc
Confidence 12222 2456778888777
Q ss_pred ceeeeec--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce
Q 011971 369 THLSCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (474)
Q Consensus 369 ~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~ 413 (474)
.++..+. |-+.++.++|+++|..|++ .+.||...+.-++..+.
T Consensus 332 ~P~~~v~nihy~~iTDiaws~dg~~l~v--SS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 332 EPLAVVDNIHYSAITDIAWSDDGSVLLV--SSTDGFCSLVTFEPWEL 376 (434)
T ss_pred cceEEEeeeeeeeecceeecCCCcEEEE--eccCCceEEEEEcchhc
Confidence 6666655 5678999999999999999 67899888777665543
No 193
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=3.7e-14 Score=144.49 Aligned_cols=236 Identities=13% Similarity=0.073 Sum_probs=163.5
Q ss_pred eEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CE
Q 011971 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS---HGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SL 262 (474)
Q Consensus 188 ~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~---dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~ 262 (474)
.|++||........+. .+...+.+.+|+|||+.|+..+. +..|.+|++.+++... +......+..+.|++ ..
T Consensus 180 ~l~~~d~dg~~~~~lt--~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYNQFVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eEEEEcCCCCCCEEee--cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCE
Confidence 7999999877665554 35678999999999999887643 3579999998875432 222333345678984 45
Q ss_pred EEE-EeCCC--cEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCC-C--cEEEEECCCCcceEEEccCCCcE
Q 011971 263 LSS-GSRDK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND-N--RLFVWNQHSTQPVLKYCEHTAAV 336 (474)
Q Consensus 263 l~s-gs~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~D-g--~v~iwd~~~~~~~~~~~~h~~~V 336 (474)
|+. .+.+| .|.+||+.++. ...+..+...+....|+|||+.|+..+.+ + .|+++|+.+++. ..+..+....
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~ 333 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQN 333 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCc
Confidence 554 45555 48889998765 34444555677889999999999877764 3 466667776643 3444444556
Q ss_pred EEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecC-CCeEEEEECCCCceeE
Q 011971 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYS-QNQIIVWRYPTMSKLA 415 (474)
Q Consensus 337 ~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~-dg~I~iwd~~~~~~~~ 415 (474)
....|+|+|+.+++++.......|.+||+.+++.. .+..........|+|||+.|+.++... ...+.++++ ++....
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~ 411 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKA 411 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeE
Confidence 78999999998877664212356889999888644 333333345788999999999853211 124677777 566667
Q ss_pred EEcCCCccEEEEEECC
Q 011971 416 TLTGHTFRVLYLAISP 431 (474)
Q Consensus 416 ~l~~h~~~V~~l~~sp 431 (474)
.+.+|.+.+...+|+|
T Consensus 412 ~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 412 RLPATDGQVKFPAWSP 427 (429)
T ss_pred ECccCCCCcCCcccCC
Confidence 7778888899999987
No 194
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=3.2e-14 Score=132.44 Aligned_cols=275 Identities=20% Similarity=0.293 Sum_probs=181.5
Q ss_pred ceeeeeCCCC--cEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEecCCCC----e
Q 011971 169 YLNLVDWSSH--NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRC----K 241 (474)
Q Consensus 169 ~v~~l~~s~~--~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g-~~la~gs~dg~I~iwd~~~~----~ 241 (474)
.+..++|++. .+++++.|..|++|+........+ +......|+|++|-|.+ .-|++|+..| |.||..... +
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~L-ks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r 177 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKL-KSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANR 177 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCCCcee-cchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccccc
Confidence 4788999993 455556789999999887444333 33446789999999954 6888888765 999986421 1
Q ss_pred E----------EEEecCCCCcEEEEEecC--CEEEEEeC-CCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEE
Q 011971 242 R----------VRTMEGHRLRVGALAWSS--SLLSSGSR-DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELAS 308 (474)
Q Consensus 242 ~----------~~~~~~h~~~V~~l~~~~--~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~las 308 (474)
. +....+| ..|++|.|++ ..+++++. |..|.|||+.++... .......+.+.-+.|+||+.+|.+
T Consensus 178 ~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~-pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI-PLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred ccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc-cccccCCCceeeEEEcCCCCEEEE
Confidence 1 1112345 7899999984 57777664 678999999987732 222234567889999999999999
Q ss_pred EeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCC----Cc-----------eeee
Q 011971 309 GGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT----NT-----------HLSC 373 (474)
Q Consensus 309 g~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~----~~-----------~~~~ 373 (474)
+.-|+..++|......-........+.|...+|+|.|..||.+.. +.-++|.+.- .. .+..
T Consensus 256 At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s----gsp~lysl~f~~~~~~~~~~~~~k~~lliaD 331 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS----GSPRLYSLTFDGEDSVFLRPQSIKRVLLIAD 331 (445)
T ss_pred ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc----CCceEEEEeecCCCccccCcccceeeeeecc
Confidence 999999999965443222222234559999999999999998875 3334443321 00 0001
Q ss_pred e-----c-----CCCCeEEEEEcCCCCeEEEEEecCC------CeEEEEECCCCceeEEE-cCC--CccEEEEEECC---
Q 011971 374 M-----D-----TGSQVCNLVWSKNVNELVSTHGYSQ------NQIIVWRYPTMSKLATL-TGH--TFRVLYLAISP--- 431 (474)
Q Consensus 374 ~-----~-----~~~~v~~l~~s~~~~~l~~~~g~~d------g~I~iwd~~~~~~~~~l-~~h--~~~V~~l~~sp--- 431 (474)
+ . ..+.+.+++|.|.|.+|+++--..+ ..|.+||....-.+.-. .+. ...-..+.|+|
T Consensus 332 L~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n 411 (445)
T KOG2139|consen 332 LQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKN 411 (445)
T ss_pred chhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeeccc
Confidence 1 0 1456889999999999999643222 34666776544332222 111 11134566666
Q ss_pred CCCEEEEEeCCCcEEEEeCC
Q 011971 432 DGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 432 dg~~l~t~s~Dg~I~iW~l~ 451 (474)
+|.+|..+=.-|.+.-|.+.
T Consensus 412 ~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 412 EGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CCcEEEEEeccCceEeeeeE
Confidence 56677666667777777664
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.68 E-value=1.9e-15 Score=149.90 Aligned_cols=246 Identities=14% Similarity=0.246 Sum_probs=179.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEee
Q 011971 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSK 286 (474)
Q Consensus 209 ~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~ 286 (474)
..|..++|-|||..|+.+..+ .+.|||.+.|..+.++++|...|.+++|+ +..+++|+.|..|.+|...-.. +.
T Consensus 13 hci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~L- 88 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--IL- 88 (1081)
T ss_pred cchheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc--ee-
Confidence 378999999999988887654 79999999999999999999999999997 7899999999999999876544 22
Q ss_pred ecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECC
Q 011971 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (474)
Q Consensus 287 ~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~ 366 (474)
-..|...|.|+.|+|-..+|++++- +..-+|....... ... .....+.+++|..||.+ ++.|- .+|+|.+-|-.
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V-~K~-kss~R~~~CsWtnDGqy-lalG~--~nGTIsiRNk~ 162 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV-SKH-KSSSRIICCSWTNDGQY-LALGM--FNGTISIRNKN 162 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH-Hhh-hhheeEEEeeecCCCcE-EEEec--cCceEEeecCC
Confidence 2469999999999999999999876 3567787654332 221 23567889999999984 55554 79999998754
Q ss_pred CCceeeeec----CCCCeEEEEEcCCCC-----eEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEE
Q 011971 367 TNTHLSCMD----TGSQVCNLVWSKNVN-----ELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIV 437 (474)
Q Consensus 367 ~~~~~~~~~----~~~~v~~l~~s~~~~-----~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~ 437 (474)
++....++ ..++|.+++|+|... .+++ .....++.+|.+ +|+.+..-..-.....++.+-++|++++
T Consensus 163 -gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV--~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~L 238 (1081)
T KOG1538|consen 163 -GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV--ADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYIL 238 (1081)
T ss_pred -CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE--EeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEE
Confidence 44433333 356799999999653 2333 334455666555 3444443333344567889999999999
Q ss_pred EEeCCCcEEEEeCCCCCCCCCCCCCcccCCc
Q 011971 438 TGAGDETLRFWNVFPSPKSQNTDSEIGASSL 468 (474)
Q Consensus 438 t~s~Dg~I~iW~l~~~~~~~~~~~~~~~~s~ 468 (474)
.|+.|+.+.+|--..-......+.+..+|++
T Consensus 239 iGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV 269 (1081)
T KOG1538|consen 239 LGGSDKQLSLFTRDGVRLGTVGEQDSWIWTV 269 (1081)
T ss_pred EccCCCceEEEeecCeEEeeccccceeEEEE
Confidence 9999999999875543333333344444443
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=6.2e-15 Score=135.21 Aligned_cols=221 Identities=16% Similarity=0.232 Sum_probs=173.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC---eEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCc-
Q 011971 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC---KRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQE- 281 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~---~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~- 281 (474)
..+|+|.+|++|+..+|++..+..|.||..... +..+++..|...|+.++|++ +.|++++.|..-++|....+.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 579999999999999999999999999998755 47788999999999999995 789999999999999985443
Q ss_pred -ceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcce----EEEccCCCcEEEEEECCCCCcEEEEecCCC
Q 011971 282 -DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV----LKYCEHTAAVKAIAWSPHLHGLLASGGGTA 356 (474)
Q Consensus 282 -~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~----~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~ 356 (474)
.+...+..+...++++.|+|.++.||+|+.-..|.||-++....= +.-+.+...|.++.|+|++- |+++|+ .
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-LlaaGs--~ 166 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGS--T 166 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc-eecccc--c
Confidence 234456678889999999999999999999999999988754321 22235678899999999864 777765 8
Q ss_pred CCeEEEEECC-----C-------------Cceeeee-cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-eeEE
Q 011971 357 DRCIRFWNTT-----T-------------NTHLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMS-KLAT 416 (474)
Q Consensus 357 d~~I~iwd~~-----~-------------~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~-~~~~ 416 (474)
|+..++|..- . |+++.++ ..++.+..+.|+|.|..|+- -..|..+.+-|..... .+..
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~law--v~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAW--VGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeE--ecCCCceEEeecCCCchhccc
Confidence 9999998632 1 2233344 45677999999999999998 5589999999876554 3444
Q ss_pred EcCCCccEEEEEECCCC
Q 011971 417 LTGHTFRVLYLAISPDG 433 (474)
Q Consensus 417 l~~h~~~V~~l~~spdg 433 (474)
+..-.-+..++.|-.+.
T Consensus 245 ~~~~~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISEN 261 (361)
T ss_pred hhhccCCceeeEeecCC
Confidence 43333666777765443
No 197
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=1.2e-15 Score=148.10 Aligned_cols=205 Identities=20% Similarity=0.333 Sum_probs=160.7
Q ss_pred CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEE
Q 011971 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALA 257 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 257 (474)
+.++.++.||.+.|.+- .+++.+.++ .|.+.|.|-.|+|||.-|++++.||.|++|. .+|-+-.++.....+|.|++
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~sv~-AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVERSIS-AHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhhhhh-hhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence 35677788999998874 466666665 6899999999999999999999999999998 34444444556778999999
Q ss_pred ecC---CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCC
Q 011971 258 WSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTA 334 (474)
Q Consensus 258 ~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~ 334 (474)
|.+ +.+++. .+.+.|=-+.... .+...++|.+-|.++.|++..+.+++||+|-..+|||.. |.++..-..|..
T Consensus 153 W~p~S~~vl~c~--g~h~~IKpL~~n~-k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey 228 (737)
T KOG1524|consen 153 WAPNSNSIVFCQ--GGHISIKPLAANS-KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY 228 (737)
T ss_pred ECCCCCceEEec--CCeEEEeeccccc-ceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc
Confidence 975 344443 4556665555444 466789999999999999999999999999999999975 667777778999
Q ss_pred cEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEE
Q 011971 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVW 406 (474)
Q Consensus 335 ~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 406 (474)
+|++++|.|+ .+++.++ -.++++=. ...+.|.++.||+||..+++ |...|.+.+-
T Consensus 229 ~ITSva~npd--~~~~v~S---~nt~R~~~----------p~~GSifnlsWS~DGTQ~a~--gt~~G~v~~A 283 (737)
T KOG1524|consen 229 AITSVAFNPE--KDYLLWS---YNTARFSS----------PRVGSIFNLSWSADGTQATC--GTSTGQLIVA 283 (737)
T ss_pred ceeeeeeccc--cceeeee---eeeeeecC----------CCccceEEEEEcCCCceeec--cccCceEEEe
Confidence 9999999999 3666653 45555222 23456899999999999998 7788877653
No 198
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=3.2e-13 Score=124.01 Aligned_cols=274 Identities=17% Similarity=0.226 Sum_probs=193.3
Q ss_pred eeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEE-EeCC------CcEEEecCCCCeEE
Q 011971 172 LVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAV-GTSH------GKVQIWDASRCKRV 243 (474)
Q Consensus 172 ~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~-gs~d------g~I~iwd~~~~~~~ 243 (474)
.++|+. ..-++++.+...+||+.+--+....... +.+.+.-+..--..++||. |+.+ ..|.|||-...+++
T Consensus 10 svs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~-~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i 88 (346)
T KOG2111|consen 10 SVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQF-IDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCI 88 (346)
T ss_pred EEEEccCCceEEEEecCceEEEecCchhhhhhhcc-ccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEE
Confidence 388987 6789999999999999875332211111 1111222222223455544 4333 36999997777777
Q ss_pred EEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeec--CcCCCEEEEEEecCCCEEEE-EeCCCcEEEEEC
Q 011971 244 RTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLS--GHKSEVCGLKWSYDNRELAS-GGNDNRLFVWNQ 320 (474)
Q Consensus 244 ~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~spd~~~las-g~~Dg~v~iwd~ 320 (474)
.++. ...+|.++.+..+.+++.-. +.|++|.....-+.+..+. .....+|+++-+.+...||. |-.-|.|.|-|+
T Consensus 89 ~el~-f~~~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL 166 (346)
T KOG2111|consen 89 IELS-FNSEIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDL 166 (346)
T ss_pred EEEE-eccceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEh
Confidence 7776 56789999999988887765 5899999875443333332 22345777776556666665 445799999999
Q ss_pred CCCcc--eEEEccCCCcEEEEEECCCCCcEEEEecCCCCCe-EEEEECCCCceeeeecCC---CCeEEEEEcCCCCeEEE
Q 011971 321 HSTQP--VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC-IRFWNTTTNTHLSCMDTG---SQVCNLVWSKNVNELVS 394 (474)
Q Consensus 321 ~~~~~--~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~-I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~ 394 (474)
...+. ...+..|.+.|.|++.+-+|. ++|+++ ..|+ |||||..+|+.+.++..+ ..|++++|||++.+|++
T Consensus 167 ~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaS--tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 167 ASTKPNAPSIINAHDSDIACVALNLQGT-LVATAS--TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV 243 (346)
T ss_pred hhcCcCCceEEEcccCceeEEEEcCCcc-EEEEec--cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE
Confidence 86654 477889999999999999987 888876 5555 899999999999999854 56999999999999999
Q ss_pred EEecCCCeEEEEECCCCc---e---------------------eEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 011971 395 THGYSQNQIIVWRYPTMS---K---------------------LATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 395 ~~g~~dg~I~iwd~~~~~---~---------------------~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l 450 (474)
.+..|+|+||.+.... . +..+.-..+...-++|-.+.+.++..+.||+-+-+.+
T Consensus 244 --sSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f 321 (346)
T KOG2111|consen 244 --SSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKF 321 (346)
T ss_pred --EcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEe
Confidence 7799999999886421 1 1112223445566778777677777888998776666
Q ss_pred CCC
Q 011971 451 FPS 453 (474)
Q Consensus 451 ~~~ 453 (474)
...
T Consensus 322 ~~~ 324 (346)
T KOG2111|consen 322 DPK 324 (346)
T ss_pred ccc
Confidence 654
No 199
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=6.5e-14 Score=143.71 Aligned_cols=280 Identities=18% Similarity=0.261 Sum_probs=206.3
Q ss_pred eeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCC---CEEEEEeCCCcEEEecCCCCeEEEEe
Q 011971 171 NLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRN---THLAVGTSHGKVQIWDASRCKRVRTM 246 (474)
Q Consensus 171 ~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g---~~la~gs~dg~I~iwd~~~~~~~~~~ 246 (474)
..-.+++ ...+.+..++.|.||...+++.+..+. +|..+++.+.+.|.. .++++++.+|.|++||...+.+++++
T Consensus 20 ~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~-~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~ 98 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTGNFVKVYSTATGECITSLE-DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTF 98 (792)
T ss_pred cccccccCCcEEEEeeCCEEEEEecchHhhhhhcc-cccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEE
Confidence 3344555 677888889999999999999988665 789999999998854 47789999999999999998888776
Q ss_pred cCCCCcEEEEEe--------------cC----------------------------------------------CEEEEE
Q 011971 247 EGHRLRVGALAW--------------SS----------------------------------------------SLLSSG 266 (474)
Q Consensus 247 ~~h~~~V~~l~~--------------~~----------------------------------------------~~l~sg 266 (474)
..+. ++..+.+ .. ..+...
T Consensus 99 ~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i 177 (792)
T KOG1963|consen 99 DNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGI 177 (792)
T ss_pred ecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEE
Confidence 5321 1111111 00 011111
Q ss_pred eCCCcEEEEECcCCcceE---eeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC----CcceEEEccCCCcEEEE
Q 011971 267 SRDKSILQRDIRAQEDFV---SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS----TQPVLKYCEHTAAVKAI 339 (474)
Q Consensus 267 s~dg~I~iwd~~~~~~~~---~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~----~~~~~~~~~h~~~V~~l 339 (474)
..+..+.+|+........ ..-..|.-.+++.+++|+++++|+|..||.|.+|.--. ......+.-|...|.++
T Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L 257 (792)
T KOG1963|consen 178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSL 257 (792)
T ss_pred EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccccee
Confidence 222334455554432111 11124666789999999999999999999999997432 12345666799999999
Q ss_pred EECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcC
Q 011971 340 AWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTG 419 (474)
Q Consensus 340 ~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~ 419 (474)
+|+++|.+|+ +|| ..+.+.+|.+.+++....-..++.|..+.++||+....+. ..|++|.+....+++...++.+
T Consensus 258 ~fS~~G~~Ll-SGG--~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~--~~DNqI~li~~~dl~~k~tIsg 332 (792)
T KOG1963|consen 258 SFSSDGAYLL-SGG--REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLV--LEDNQIHLIKASDLEIKSTISG 332 (792)
T ss_pred EEecCCceEe-ecc--cceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEE--ecCceEEEEeccchhhhhhccC
Confidence 9999998555 554 8999999999999854444578999999999999998884 4799999999988776665554
Q ss_pred C-----------CccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 011971 420 H-----------TFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 420 h-----------~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~ 457 (474)
- .+-.+.++++|.-+.++-.+..|.|.+||+.+.....
T Consensus 333 i~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~ 381 (792)
T KOG1963|consen 333 IKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIY 381 (792)
T ss_pred ccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceee
Confidence 2 2346778899966778888899999999998876543
No 200
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.66 E-value=1.7e-16 Score=160.82 Aligned_cols=238 Identities=19% Similarity=0.313 Sum_probs=182.7
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcce
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDF 283 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~ 283 (474)
+|-.+|.|+.|...|.++++|+.|..|+||..++..++..+.||.+.|+.++.+. -.+++++.|..|++|.+..+. +
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~-p 266 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA-P 266 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc-h
Confidence 8999999999999999999999999999999999999999999999999999973 578899999999999999887 6
Q ss_pred EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEE----c-cCCCcEEEEEECCCCCcEEEEecCCCCC
Q 011971 284 VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKY----C-EHTAAVKAIAWSPHLHGLLASGGGTADR 358 (474)
Q Consensus 284 ~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~----~-~h~~~V~~l~~sp~~~~ll~sg~Gt~d~ 358 (474)
+..+.+|++.|++|+|+|-. +.+.||++++||.+- .+.... . ....-+-++.|...+.. +++| +.|+
T Consensus 267 vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~-f~Tg--s~d~ 338 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDR-FLTG--SRDG 338 (1113)
T ss_pred HHHHhccccceeeeccCccc----cCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccccccc-cccc--cCCc
Confidence 88899999999999999964 778899999999882 111111 0 12244556666666553 3443 3777
Q ss_pred eEEEEECCCCceeeeecCCCCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECC-CCCEE
Q 011971 359 CIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN-ELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISP-DGQTI 436 (474)
Q Consensus 359 ~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l 436 (474)
.-..|.+..-.. ....+.-+.++.+.. +.++ .-.+-.+++|++.++..++.+.+|...+..|.++| +....
T Consensus 339 ea~n~e~~~l~~-----~~~~lif~t~ssd~~~~~~~--ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ 411 (1113)
T KOG0644|consen 339 EARNHEFEQLAW-----RSNLLIFVTRSSDLSSIVVT--ARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIA 411 (1113)
T ss_pred ccccchhhHhhh-----hccceEEEecccccccccee--eeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhh
Confidence 766665432111 011111122222222 3333 45677899999999999999999999999999999 45556
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCC
Q 011971 437 VTGAGDETLRFWNVFPSPKSQNT 459 (474)
Q Consensus 437 ~t~s~Dg~I~iW~l~~~~~~~~~ 459 (474)
.+++.||...|||+..+.+.+..
T Consensus 412 msag~dgst~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 412 MSAGYDGSTIIWDIWEGIPIKHY 434 (1113)
T ss_pred hhccCCCceEeeecccCCcceee
Confidence 68999999999999998876654
No 201
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=1.5e-13 Score=135.68 Aligned_cols=235 Identities=12% Similarity=0.074 Sum_probs=158.5
Q ss_pred eeeeeCCC-CcEEEEE--cCCeEEEEeCC-CCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEecCCCC----
Q 011971 170 LNLVDWSS-HNVLAVG--LGNCVYLWNAC-SSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-HGKVQIWDASRC---- 240 (474)
Q Consensus 170 v~~l~~s~-~~~la~~--~d~~V~lwd~~-~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~-dg~I~iwd~~~~---- 240 (474)
...+.+++ +++|.++ .++.|.+|++. ++++...-.....+....++|+|+|++|++++. ++.|.+|++++.
T Consensus 37 ~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~ 116 (330)
T PRK11028 37 VQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV 116 (330)
T ss_pred CccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC
Confidence 34567777 4555444 36789999986 444433322233446789999999998888765 789999998642
Q ss_pred eEEEEecCCCCcEEEEEecC--CEE-EEEeCCCcEEEEECcCCcceE------eeecCcCCCEEEEEEecCCCEEEEEeC
Q 011971 241 KRVRTMEGHRLRVGALAWSS--SLL-SSGSRDKSILQRDIRAQEDFV------SKLSGHKSEVCGLKWSYDNRELASGGN 311 (474)
Q Consensus 241 ~~~~~~~~h~~~V~~l~~~~--~~l-~sgs~dg~I~iwd~~~~~~~~------~~~~~h~~~V~~l~~spd~~~lasg~~ 311 (474)
+.+..+. +.....++++++ +++ ++...++.|.+||+.....+. ... ........+.|+|++++++++..
T Consensus 117 ~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 117 APIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred Cceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec-CCCCCCceEEECCCCCEEEEEec
Confidence 2233332 223456677874 455 455567999999997643221 011 12244678999999999988876
Q ss_pred -CCcEEEEECCC--C--cceEEEccC------CCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc----eeeeecC
Q 011971 312 -DNRLFVWNQHS--T--QPVLKYCEH------TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT----HLSCMDT 376 (474)
Q Consensus 312 -Dg~v~iwd~~~--~--~~~~~~~~h------~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~----~~~~~~~ 376 (474)
++.|.+||+.. + +.+..+..+ ......+.++|++++++++.. .++.|.+|++.... .+..+..
T Consensus 195 ~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~--~~~~I~v~~i~~~~~~~~~~~~~~~ 272 (330)
T PRK11028 195 LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR--TASLISVFSVSEDGSVLSFEGHQPT 272 (330)
T ss_pred CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC--CCCeEEEEEEeCCCCeEEEeEEEec
Confidence 89999999973 2 223333221 122346899999998888753 57899999985432 3344445
Q ss_pred CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011971 377 GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (474)
Q Consensus 377 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 409 (474)
+.....+.++|+|++|+++ ...++.|.+|++.
T Consensus 273 ~~~p~~~~~~~dg~~l~va-~~~~~~v~v~~~~ 304 (330)
T PRK11028 273 ETQPRGFNIDHSGKYLIAA-GQKSHHISVYEID 304 (330)
T ss_pred cccCCceEECCCCCEEEEE-EccCCcEEEEEEc
Confidence 5567789999999999996 4468999999875
No 202
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=4.4e-14 Score=144.41 Aligned_cols=236 Identities=14% Similarity=0.117 Sum_probs=163.7
Q ss_pred eEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEecCCCCeEEEEecCCCCcEEEEEecC--CE
Q 011971 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH---GKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SL 262 (474)
Q Consensus 188 ~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~ 262 (474)
.|++||........+. .+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +..+.+...++.|++ +.
T Consensus 185 ~l~i~D~~g~~~~~lt--~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 185 ALQVADSDGYNPQTIL--RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEECCCCCCceEee--cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 6999999766655554 456789999999999999987743 469999998776533 333444556788984 44
Q ss_pred E-EEEeCCC--cEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC-CC--cEEEEECCCCcceEEEccCCCcE
Q 011971 263 L-SSGSRDK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-DN--RLFVWNQHSTQPVLKYCEHTAAV 336 (474)
Q Consensus 263 l-~sgs~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~-Dg--~v~iwd~~~~~~~~~~~~h~~~V 336 (474)
| ++.+.+| .|++||+.++. ...+..+.......+|+|||++|+.++. +| .|+++|+.+++. ..+..+....
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~~ 338 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNYN 338 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCCc
Confidence 4 4556666 59999998765 4455556555678899999999887764 44 477778876653 3333333445
Q ss_pred EEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceeE
Q 011971 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY-SQNQIIVWRYPTMSKLA 415 (474)
Q Consensus 337 ~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~-~dg~I~iwd~~~~~~~~ 415 (474)
..++|+|+|+.++++........|.+||+.+++.. .+..+.......|+|+|+.++.+... ..+.|.+++.. +....
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~ 416 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQ 416 (433)
T ss_pred cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceE
Confidence 57899999998877653112236999999888755 44444345678999999998875332 23468888874 44556
Q ss_pred EEcCCCccEEEEEECC
Q 011971 416 TLTGHTFRVLYLAISP 431 (474)
Q Consensus 416 ~l~~h~~~V~~l~~sp 431 (474)
.+..+.+.+...+|+|
T Consensus 417 ~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 417 RLVSADGEVREPAWSP 432 (433)
T ss_pred EcccCCCCCCCCccCC
Confidence 6666667777888876
No 203
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=2.1e-13 Score=125.19 Aligned_cols=241 Identities=13% Similarity=0.179 Sum_probs=172.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCC--CcEEEEEecCCEEEEEeC-C------CcEEEEECcCC
Q 011971 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHR--LRVGALAWSSSLLSSGSR-D------KSILQRDIRAQ 280 (474)
Q Consensus 210 ~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~--~~V~~l~~~~~~l~sgs~-d------g~I~iwd~~~~ 280 (474)
...+++|+.|...+++|..+| .+||+.+--+.......+. -.+..|-|-.++|+..+. + ..|.|||-..
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k- 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK- 84 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc-
Confidence 455699999999999999887 8999987644332222222 334444555566554433 2 3699999333
Q ss_pred cceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECC-CCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCe
Q 011971 281 EDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH-STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC 359 (474)
Q Consensus 281 ~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~-~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~ 359 (474)
+.++..+ ....+|.++.+.++ .|++.- .+.|+||... +.+.++.+.....+=--++.+|....-+.+.-|..-|.
T Consensus 85 ~~~i~el-~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 85 ERCIIEL-SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred CcEEEEE-EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 3344444 35788999999876 555544 5799999987 55666666543323234555665443333333557799
Q ss_pred EEEEECCCCce---eeeecCCCCeEEEEEcCCCCeEEEEEecCCC-eEEEEECCCCceeEEEcC--CCccEEEEEECCCC
Q 011971 360 IRFWNTTTNTH---LSCMDTGSQVCNLVWSKNVNELVSTHGYSQN-QIIVWRYPTMSKLATLTG--HTFRVLYLAISPDG 433 (474)
Q Consensus 360 I~iwd~~~~~~---~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg-~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg 433 (474)
|.+-|+...+. .....|.+.|.+++.+.+|..+++ ++..| -|+|||..+++++.++.. ....|.+++||||+
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vAT--aStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVAT--ASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEE--eccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 99999987655 455568999999999999999999 55666 589999999999999974 34569999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCCC
Q 011971 434 QTIVTGAGDETLRFWNVFPSPKSQN 458 (474)
Q Consensus 434 ~~l~t~s~Dg~I~iW~l~~~~~~~~ 458 (474)
.+|++++.-|+|+|+.+........
T Consensus 239 s~LavsSdKgTlHiF~l~~~~~~~~ 263 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIFSLRDTENTED 263 (346)
T ss_pred cEEEEEcCCCeEEEEEeecCCCCcc
Confidence 9999999999999999987654433
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.8e-14 Score=135.43 Aligned_cols=198 Identities=17% Similarity=0.186 Sum_probs=154.9
Q ss_pred EEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEcc
Q 011971 254 GALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE 331 (474)
Q Consensus 254 ~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~ 331 (474)
.+++|+ +..|++|+.||++++|+..... .+.....|..+|.+|.|+|||+.|++-+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch-hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 456666 5799999999999999976655 355667899999999999999999999999 999999999977666542
Q ss_pred --CCCcEEEEEECCCC---CcEEEEecCCCCCeEEEEECCCCce------eeeecCCCCeEEEEEcCCCCeEEEEEecCC
Q 011971 332 --HTAAVKAIAWSPHL---HGLLASGGGTADRCIRFWNTTTNTH------LSCMDTGSQVCNLVWSKNVNELVSTHGYSQ 400 (474)
Q Consensus 332 --h~~~V~~l~~sp~~---~~ll~sg~Gt~d~~I~iwd~~~~~~------~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d 400 (474)
.......+.|+.++ ..++++.- ..-+.|+.|++....- .+.+.....|.+++.+.+|++++. |+.+
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~-~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al--GT~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQ-FPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL--GTMD 302 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEec-CCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE--eccC
Confidence 23356677787765 32333321 2456677777654222 222234557999999999999999 8899
Q ss_pred CeEEEEECCCCceeEEEc-CCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 011971 401 NQIIVWRYPTMSKLATLT-GHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKS 456 (474)
Q Consensus 401 g~I~iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~ 456 (474)
|.|.|++..+++.+.-.+ .|...|+.+.|+||.+++++.+.|..+.+..+.-....
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~~~ 359 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDKTM 359 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeecccc
Confidence 999999999999887665 79999999999999999999999999999988764443
No 205
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.65 E-value=3.8e-14 Score=149.44 Aligned_cols=293 Identities=18% Similarity=0.194 Sum_probs=197.4
Q ss_pred CcccccCCCCCCCcceeeeeCCC-C--cEEEEEcCCeEEEEeCCCC-----CEEEEEecC-CCCCEEEEEEcCCCCEEEE
Q 011971 155 PYKILDAPALQDDFYLNLVDWSS-H--NVLAVGLGNCVYLWNACSS-----KVTKLCDLG-IDDSVCSVGWANRNTHLAV 225 (474)
Q Consensus 155 p~~~l~ap~~~~d~~v~~l~~s~-~--~~la~~~d~~V~lwd~~~~-----~~~~~~~~~-~~~~V~~v~~sp~g~~la~ 225 (474)
|.-+|-|.-..+.-.++.++-++ + -+++++.||+|++||...- .....+... ....+.++...+.++.+|+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 44445554444555566666665 2 3555667899999997532 111222222 4678999999999999999
Q ss_pred EeCCCcEEEecCCC--Ce-----EEEEecCC-CCcEE-EEEec---C-CEEEEEeCCCcEEEEECcCCcce-EeeecCcC
Q 011971 226 GTSHGKVQIWDASR--CK-----RVRTMEGH-RLRVG-ALAWS---S-SLLSSGSRDKSILQRDIRAQEDF-VSKLSGHK 291 (474)
Q Consensus 226 gs~dg~I~iwd~~~--~~-----~~~~~~~h-~~~V~-~l~~~---~-~~l~sgs~dg~I~iwd~~~~~~~-~~~~~~h~ 291 (474)
|+.||.|++.+++. .+ ..+....+ .+.+. ..++. . ..|+.+..-+.|..||++..... ........
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 99999999999875 11 22222222 23333 33443 2 38889999999999999876532 12233345
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEc-cCCCcEEEEEECCCCC--cEEEEecCCCCCeEEEEECCCC
Q 011971 292 SEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLH--GLLASGGGTADRCIRFWNTTTN 368 (474)
Q Consensus 292 ~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~--~ll~sg~Gt~d~~I~iwd~~~~ 368 (474)
+.|++++.+|.++++++|...|.+.+||++=+.++..+. .+..++..+..+|-.. ...++++.+..+.|.+|++.+|
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 789999999999999999999999999999888877764 3557888888887654 5555554335788999999998
Q ss_pred ceeeeecCCCCe--------------------EEEEEcCCCCeEEEEEecCCCeEEEEECCCCcee--------------
Q 011971 369 THLSCMDTGSQV--------------------CNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKL-------------- 414 (474)
Q Consensus 369 ~~~~~~~~~~~v--------------------~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~-------------- 414 (474)
.+...+-....+ ....+..-+..+++ |++|..|+.||....+..
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~lt--ggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~ 1353 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLT--GGSDMKIRKWDPTRPEISSYAVPGPSTSYSTN 1353 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeee--cCCccceeeccCCCcccccccccCcccccccc
Confidence 776655432111 11222223334444 889999999997431100
Q ss_pred ----------------------------------EEE--------cCCCccEEEEEECCC-CCEEEEEeCCCcEEEEe
Q 011971 415 ----------------------------------ATL--------TGHTFRVLYLAISPD-GQTIVTGAGDETLRFWN 449 (474)
Q Consensus 415 ----------------------------------~~l--------~~h~~~V~~l~~spd-g~~l~t~s~Dg~I~iW~ 449 (474)
..+ ..|...|+++++... ..+|++++.||.|++|.
T Consensus 1354 ~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1354 SESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred chhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000 136778888887654 35889999999999994
No 206
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2.2e-13 Score=139.44 Aligned_cols=235 Identities=14% Similarity=0.119 Sum_probs=165.1
Q ss_pred eEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeC---CCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CE
Q 011971 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS---HGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SL 262 (474)
Q Consensus 188 ~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~---dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~ 262 (474)
.|++||..+.....+. .+...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+...+|++ +.
T Consensus 183 ~l~~~d~dg~~~~~lt--~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 183 RLAIMDQDGANVRYLT--DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred EEEEECCCCCCcEEEe--cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 7999999776665554 56778999999999999888764 468999999887653 4455666778889984 44
Q ss_pred E-EEEeCCCc--EEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC-C--CcEEEEECCCCcceEEEccCCCcE
Q 011971 263 L-SSGSRDKS--ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-D--NRLFVWNQHSTQPVLKYCEHTAAV 336 (474)
Q Consensus 263 l-~sgs~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~-D--g~v~iwd~~~~~~~~~~~~h~~~V 336 (474)
| ++.+.++. |.+||+.++. ...+..+........|+|||+.|+..+. + ..|++||+..++. ..+..+...+
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~ 336 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRY 336 (435)
T ss_pred EEEEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcc
Confidence 4 56666665 7777887665 4556666666778999999999887764 2 3688999876654 4444445567
Q ss_pred EEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCC----CeEEEEECCCCc
Q 011971 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ----NQIIVWRYPTMS 412 (474)
Q Consensus 337 ~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d----g~I~iwd~~~~~ 412 (474)
....|+|+|+.++++.....+..|.+||+.++. ...+.....+....|+|+|+.|+.+..... ..|.++|+..+.
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 778999999988776532123578899986554 344444445778999999999887643222 368888876554
Q ss_pred eeEEEcCCCccEEEEEECC
Q 011971 413 KLATLTGHTFRVLYLAISP 431 (474)
Q Consensus 413 ~~~~l~~h~~~V~~l~~sp 431 (474)
. ..+. ..+.+...+|+|
T Consensus 416 ~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 416 E-REVP-TPGDASDPAWSP 432 (435)
T ss_pred e-EEcc-CCCCccCcccCC
Confidence 4 3443 234466677776
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2.1e-14 Score=146.53 Aligned_cols=209 Identities=16% Similarity=0.166 Sum_probs=147.5
Q ss_pred CCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCC---CcEEEEECcCCcc-eEeeecCcCCCEEEEEEecC
Q 011971 229 HGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRD---KSILQRDIRAQED-FVSKLSGHKSEVCGLKWSYD 302 (474)
Q Consensus 229 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~d---g~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spd 302 (474)
+..|.+||..... .+.+..|...+.+..|++ +.|+.++.+ ..|++||+.++.. .+..+.+| ...++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4689999986544 556777888999999985 577776543 3699999987652 23333333 446899999
Q ss_pred CCEEEEEe-CCCcEE--EEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ceeeeecCCC
Q 011971 303 NRELASGG-NDNRLF--VWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLSCMDTGS 378 (474)
Q Consensus 303 ~~~lasg~-~Dg~v~--iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~-~~~~~~~~~~ 378 (474)
|+.|+.+. .+|.+. +||+.+++ ...+..+...+...+|+|+|+.++++.. .++...+|++... .....+....
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~--~~g~~~I~~~~~~~~~~~~l~~~~ 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSD--RSGSPQVYRMSASGGGASLVGGRG 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEEC--CCCCceEEEEECCCCCeEEecCCC
Confidence 99988765 577654 55666554 4556677778889999999998877764 5677778776432 2222232222
Q ss_pred CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 011971 379 QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 379 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
.+..|+|+|+.++.++ . ..+.+||+.+++.......+ ....+.|+|||++|+.++.++.+.+|.+.
T Consensus 336 --~~~~~SpDG~~ia~~~--~-~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 336 --YSAQISADGKTLVMIN--G-DNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred --CCccCCCCCCEEEEEc--C-CCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 4578999999998853 3 45677999887654322222 23567899999999999999998888764
No 208
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=5.9e-14 Score=130.69 Aligned_cols=238 Identities=21% Similarity=0.305 Sum_probs=169.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec-CCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcc-
Q 011971 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME-GHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQED- 282 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~- 282 (474)
+..+..++|++.-..+|++..|-.|++||-.. +....++ .....|+|++|.| ..|+.|+..| |.+|.......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 34678899999777889999999999999776 4445554 3567899999974 6788888765 78897653221
Q ss_pred ------------eEeeecCcCCCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEE
Q 011971 283 ------------FVSKLSGHKSEVCGLKWSYDNRELASGGN-DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLL 349 (474)
Q Consensus 283 ------------~~~~~~~h~~~V~~l~~spd~~~lasg~~-Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 349 (474)
.+....+| ..|+++.|.+||..+++++. |..|.|||..++..+.-.....+.+.-+.|+||+..++
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 12223345 67999999999999999875 56799999998876554445567889999999999998
Q ss_pred EEecCCCCCeEEEEECC-CCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC---------------ce
Q 011971 350 ASGGGTADRCIRFWNTT-TNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM---------------SK 413 (474)
Q Consensus 350 ~sg~Gt~d~~I~iwd~~-~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~---------------~~ 413 (474)
++. -|+..++|+.. +.....-.-....|...+|+|+|+.|+.+.. +.-++|.+... ..
T Consensus 255 aAt---~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gsp~lysl~f~~~~~~~~~~~~~k~~ll 328 (445)
T KOG2139|consen 255 AAT---CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GSPRLYSLTFDGEDSVFLRPQSIKRVLL 328 (445)
T ss_pred Eec---ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CCceEEEEeecCCCccccCcccceeeee
Confidence 876 69999999644 4444444445558999999999999887532 33344443210 01
Q ss_pred eEEEc------C---CCccEEEEEECCCCCEEEEEeCCC--------cEEEEeCCCCC
Q 011971 414 LATLT------G---HTFRVLYLAISPDGQTIVTGAGDE--------TLRFWNVFPSP 454 (474)
Q Consensus 414 ~~~l~------~---h~~~V~~l~~spdg~~l~t~s~Dg--------~I~iW~l~~~~ 454 (474)
+..+. + -.+.+.+++|.|.|.+|++.-..+ .|.+||....+
T Consensus 329 iaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp 386 (445)
T KOG2139|consen 329 IADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP 386 (445)
T ss_pred eccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC
Confidence 11111 1 145788999999999999875443 35566655443
No 209
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.7e-13 Score=138.31 Aligned_cols=239 Identities=13% Similarity=0.023 Sum_probs=158.6
Q ss_pred CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEecCCCCeEEEEecCCCCcEEEEEecC--C
Q 011971 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH---GKVQIWDASRCKRVRTMEGHRLRVGALAWSS--S 261 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~ 261 (474)
..|++||........+. .+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+...+|++ +
T Consensus 176 ~~L~~~D~dG~~~~~l~--~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDADGQNAQSAL--SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCCCCCceEec--cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 37888888655544443 466789999999999999887643 359999999886543 333445567889985 4
Q ss_pred EEE-EEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC-CCcEEEE--ECCCCcceEEEccCCCcEE
Q 011971 262 LLS-SGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-DNRLFVW--NQHSTQPVLKYCEHTAAVK 337 (474)
Q Consensus 262 ~l~-sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~-Dg~v~iw--d~~~~~~~~~~~~h~~~V~ 337 (474)
.|+ +.+.+|...+|.+.........+..+...+....|+|||+.|+..++ +|...|| ++.+++. ..+..+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcC
Confidence 554 67788876666554322224555556556677889999999887664 4555555 4444443 22222333345
Q ss_pred EEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCC--eEEEEECCCCceeE
Q 011971 338 AIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQN--QIIVWRYPTMSKLA 415 (474)
Q Consensus 338 ~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~~~~ 415 (474)
..+|+|+|+.++.+.....+..|.+||+.+++.... ..........|+|+|+.|+.+.. ..| .+.+.+. ++....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t~~~~~~~p~~spdg~~l~~~~~-~~g~~~l~~~~~-~g~~~~ 408 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL-TDTTRDESPSFAPNGRYILYATQ-QGGRSVLAAVSS-DGRIKQ 408 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc-cCCCCccCceECCCCCEEEEEEe-cCCCEEEEEEEC-CCCceE
Confidence 689999999887765311123699999988875443 33334567899999999988632 333 3555566 455566
Q ss_pred EEcCCCccEEEEEECCC
Q 011971 416 TLTGHTFRVLYLAISPD 432 (474)
Q Consensus 416 ~l~~h~~~V~~l~~spd 432 (474)
.+..+.+.+...+|+|-
T Consensus 409 ~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 409 RLSVQGGDVREPSWGPF 425 (427)
T ss_pred EeecCCCCCCCCccCCC
Confidence 66667777788888873
No 210
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=5.2e-14 Score=146.36 Aligned_cols=227 Identities=21% Similarity=0.333 Sum_probs=168.4
Q ss_pred CcEEEEEcCCeEEEEeCC-CC-CEEEEEe---------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEe
Q 011971 178 HNVLAVGLGNCVYLWNAC-SS-KVTKLCD---------LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~-~~-~~~~~~~---------~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~ 246 (474)
.-+|+++.||.|+||+-- .. +..++.. .+..+.-.-+.|.....+|++++.-..|+|||++...++..+
T Consensus 1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di 1203 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI 1203 (1387)
T ss_pred hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeec
Confidence 357888889999999743 21 2222221 012222245688887667777777889999999988888776
Q ss_pred c-CCCCcEEEEEec---CCEEEEEeCCCcEEEEECcCCcc--eEeeecCcCCC--EEEEEEecCCC-EEEEEeCCCcEEE
Q 011971 247 E-GHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQED--FVSKLSGHKSE--VCGLKWSYDNR-ELASGGNDNRLFV 317 (474)
Q Consensus 247 ~-~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~h~~~--V~~l~~spd~~-~lasg~~Dg~v~i 317 (474)
. +....|+++.-+ ++.+++|..||.|++||.+.... .+...+.|... |..+.+.+.|- .|++|+.||.|++
T Consensus 1204 P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~ 1283 (1387)
T KOG1517|consen 1204 PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQL 1283 (1387)
T ss_pred ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEE
Confidence 5 455677777765 68999999999999999987653 57777888877 99999998664 5999999999999
Q ss_pred EECCCCcc--eEEEccCC---CcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--------CCCCeEEEE
Q 011971 318 WNQHSTQP--VLKYCEHT---AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--------TGSQVCNLV 384 (474)
Q Consensus 318 wd~~~~~~--~~~~~~h~---~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~--------~~~~v~~l~ 384 (474)
||++.... ..++..|. +.++++..+++.. ++|+|+ . +.|+||++... .+..+. ....+.+++
T Consensus 1284 ~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs--~-q~ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~ 1358 (1387)
T KOG1517|consen 1284 LDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGS--A-QLIKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLA 1358 (1387)
T ss_pred EecccCcccccceeeeccccCccceeeeeccCCC-eeeecC--c-ceEEEEecChh-hhcccccCcccccCcCCCcceee
Confidence 99997421 22232332 3599999999976 888885 4 99999998643 333332 123579999
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCCC
Q 011971 385 WSKNVNELVSTHGYSQNQIIVWRYPTM 411 (474)
Q Consensus 385 ~s~~~~~l~~~~g~~dg~I~iwd~~~~ 411 (474)
|+|..-.+++ |+.|+.|.||..+..
T Consensus 1359 FHP~~~llAa--G~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1359 FHPHRLLLAA--GSADSTVSIYSCEKP 1383 (1387)
T ss_pred ecchhHhhhh--ccCCceEEEeecCCc
Confidence 9999988888 899999999987654
No 211
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=7.5e-15 Score=141.28 Aligned_cols=282 Identities=18% Similarity=0.255 Sum_probs=214.9
Q ss_pred cceeeeeCCC-CcEEEEEc-CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCC--CCEEEEEeCCCcEEEecCCC-CeE
Q 011971 168 FYLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANR--NTHLAVGTSHGKVQIWDASR-CKR 242 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~~~-d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~--g~~la~gs~dg~I~iwd~~~-~~~ 242 (474)
-.++.|.|+. +.+|+.|+ |..|.+||...++....+.-+|...|.--.|-|. ..-+++++.||.|++=.+.. +.+
T Consensus 143 GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~ 222 (559)
T KOG1334|consen 143 GCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYV 222 (559)
T ss_pred CccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccce
Confidence 4588899987 67777665 5699999999999888887799988988889884 35789999999999877643 322
Q ss_pred --EEEecCCCCcEEEEEec---CCEEEEEeCCCcEEEEECcCCcc--eEeeecCcCC---CEEEEEEecCC-CEEEEEeC
Q 011971 243 --VRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQED--FVSKLSGHKS---EVCGLKWSYDN-RELASGGN 311 (474)
Q Consensus 243 --~~~~~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~h~~---~V~~l~~spd~-~~lasg~~ 311 (474)
...+..|.++|..++.. +..|.+++.|+.+..+|++.... ....-..+.. ....++.+|.. .++++|+.
T Consensus 223 e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~ 302 (559)
T KOG1334|consen 223 ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGS 302 (559)
T ss_pred ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCCh
Confidence 33455799999988875 58999999999999999987652 1222233333 56788888855 48999999
Q ss_pred CCcEEEEECCCCc------ceEEEc------cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc----------
Q 011971 312 DNRLFVWNQHSTQ------PVLKYC------EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT---------- 369 (474)
Q Consensus 312 Dg~v~iwd~~~~~------~~~~~~------~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~---------- 369 (474)
|..+++||.+.-. .+..+. .....|++++|+.++..|+++- .|-.|++++-..+.
T Consensus 303 dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY---nDe~IYLF~~~~~~G~~p~~~s~~ 379 (559)
T KOG1334|consen 303 DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY---NDEDIYLFNKSMGDGSEPDPSSPR 379 (559)
T ss_pred hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee---cccceEEeccccccCCCCCCCcch
Confidence 9999999987532 123332 2345799999998888899986 58889999543221
Q ss_pred --eeee-ecC---CCCeEEEEE-cCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCC
Q 011971 370 --HLSC-MDT---GSQVCNLVW-SKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGD 442 (474)
Q Consensus 370 --~~~~-~~~---~~~v~~l~~-s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~D 442 (474)
.+.. ++. ...|..+-| -|...++++ |+.-|.|.||+-.+++.+.-+.+-..-|+||.-+|--..||+.+-|
T Consensus 380 ~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvS--GSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid 457 (559)
T KOG1334|consen 380 EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVS--GSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGID 457 (559)
T ss_pred hhccchhhcccccccccceeeeccCccceEEe--cCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCc
Confidence 1112 221 123666654 577788888 9999999999999999999888877799999999988999999999
Q ss_pred CcEEEEeCCCCC
Q 011971 443 ETLRFWNVFPSP 454 (474)
Q Consensus 443 g~I~iW~l~~~~ 454 (474)
..|+||--....
T Consensus 458 ~DVKIWTP~~~e 469 (559)
T KOG1334|consen 458 HDVKIWTPLTAE 469 (559)
T ss_pred cceeeecCCccc
Confidence 999999874443
No 212
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.61 E-value=9.4e-14 Score=125.60 Aligned_cols=155 Identities=17% Similarity=0.319 Sum_probs=114.5
Q ss_pred EEEEEEecCCCEEEEEeC----------CCcEEEEECCC-CcceEEEc-cCCCcEEEEEECCCCCcEEEEecCCCCCeEE
Q 011971 294 VCGLKWSYDNRELASGGN----------DNRLFVWNQHS-TQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIR 361 (474)
Q Consensus 294 V~~l~~spd~~~lasg~~----------Dg~v~iwd~~~-~~~~~~~~-~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~ 361 (474)
=+.+.|+++|.+|++-.. -+...+|.++. ..++..+. ...++|.+++|+|++..++++. |..++.|.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~~~~v~ 86 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY-GSMPAKVT 86 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEE-ccCCcccE
Confidence 357889999988765433 12344444422 23344443 2445799999999999876664 34678999
Q ss_pred EEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEE-ecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEe
Q 011971 362 FWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTH-GYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGA 440 (474)
Q Consensus 362 iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s 440 (474)
+||++ ++.+..+. ...+..+.|+|+|++++++. +...|.|.+||..+.+.+.+.. |. .+..++|+|||++|++++
T Consensus 87 lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATAT 162 (194)
T ss_pred EEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEE
Confidence 99997 66666664 45678899999999999962 2345789999999998888765 33 478999999999999886
Q ss_pred C------CCcEEEEeCCCC
Q 011971 441 G------DETLRFWNVFPS 453 (474)
Q Consensus 441 ~------Dg~I~iW~l~~~ 453 (474)
. |..++||++...
T Consensus 163 t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred eccceeccccEEEEEecCe
Confidence 4 789999998654
No 213
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=8.3e-15 Score=142.67 Aligned_cols=211 Identities=21% Similarity=0.275 Sum_probs=160.7
Q ss_pred EEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec--CCCEEEEEeCCCcEEE
Q 011971 242 RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY--DNRELASGGNDNRLFV 317 (474)
Q Consensus 242 ~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~lasg~~Dg~v~i 317 (474)
....+.||++.|+|+.|+ +.+|++|+.|-.+.|||.-..+.....-.+|...|.+++|-| +.+++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 345678999999999998 689999999999999999866654555678999999999998 5678999999999999
Q ss_pred EECCC----------CcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee-ee-------c---C
Q 011971 318 WNQHS----------TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS-CM-------D---T 376 (474)
Q Consensus 318 wd~~~----------~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~-~~-------~---~ 376 (474)
+|+.. .+....+..|...|+.|+-.|.+...+.+++ +||+|+-+|++....-. .. . .
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsas--EDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSAS--EDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEec--CCcceeeecccCCccCCccccccHHHHHhchh
Confidence 99984 2344556679999999999999988888887 99999999998632211 11 0 1
Q ss_pred CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC--------Cc----------eeEEEc-CCC-----------ccEEE
Q 011971 377 GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT--------MS----------KLATLT-GHT-----------FRVLY 426 (474)
Q Consensus 377 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~--------~~----------~~~~l~-~h~-----------~~V~~ 426 (474)
--...++.++|...+++.+ |+++-..++||.+. +. ++.-+. +|- ..++.
T Consensus 200 lielk~ltisp~rp~~laV-GgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAV-GGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hheeeeeeecCCCCceEEe-cCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 1246788999987766555 88999999999421 11 122221 222 12678
Q ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCCC
Q 011971 427 LAISPDGQTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 427 l~~spdg~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
++|+|+|.-|+..-+...|+++|+..++.
T Consensus 279 vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred EEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 89999998666665667899999987653
No 214
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.61 E-value=8.1e-14 Score=128.25 Aligned_cols=274 Identities=19% Similarity=0.305 Sum_probs=201.6
Q ss_pred eeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEE-EeCCCcEEEecCCCCeEEEEecCC
Q 011971 172 LVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAV-GTSHGKVQIWDASRCKRVRTMEGH 249 (474)
Q Consensus 172 ~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~-gs~dg~I~iwd~~~~~~~~~~~~h 249 (474)
.+.+|| ++.+|+..+-.+.|-|.++-++.+++.. -+.|..+.|..|..++++ ...++.|++|++...+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c--ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC--LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH--HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 467788 8999999999999999999888777643 567889999998876555 466889999999999999999999
Q ss_pred CCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC---------------
Q 011971 250 RLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN--------------- 311 (474)
Q Consensus 250 ~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~--------------- 311 (474)
...+..++|+| ++|.+...+-.|.+|.+.+.... .+.-.+..+.+++|+|||++.+..+.
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~--~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY--LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeE--EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 99999999995 57888899999999999886632 22333445678888888887766543
Q ss_pred ---------------------CCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce
Q 011971 312 ---------------------DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370 (474)
Q Consensus 312 ---------------------Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~ 370 (474)
++.+.|||.--.-.+..+ ...-.++.++|+|.+. +++.|+ .|+.+|+.|--+.+.
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~q-flavGs--yD~~lrvlnh~tWk~ 244 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQ-FLAVGS--YDQMLRVLNHFTWKP 244 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee-eeccceeEEEeccccc-eEEeec--cchhhhhhceeeeee
Confidence 223445553211112222 2335789999999865 777776 899988866432111
Q ss_pred ee------------------------------------------------------------eec-------CCCCeEEE
Q 011971 371 LS------------------------------------------------------------CMD-------TGSQVCNL 383 (474)
Q Consensus 371 ~~------------------------------------------------------------~~~-------~~~~v~~l 383 (474)
.. .++ ....+.-+
T Consensus 245 f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~l 324 (447)
T KOG4497|consen 245 FGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKL 324 (447)
T ss_pred hhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccccee
Confidence 00 000 01235678
Q ss_pred EEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 384 VWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 384 ~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
+|++|..++++.....-+.+-+||+...+....+. ...+|.+..|.|....|+.+.+...+++|......
T Consensus 325 afs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 325 AFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred eecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCce
Confidence 99999999999766667899999998877655543 35679999999988888888888889999887643
No 215
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=1.7e-13 Score=144.65 Aligned_cols=259 Identities=16% Similarity=0.251 Sum_probs=177.0
Q ss_pred EeCCCCCEEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEecCCCC-------eEEEEecCCCCcEEEEE--ecCC
Q 011971 192 WNACSSKVTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRC-------KRVRTMEGHRLRVGALA--WSSS 261 (474)
Q Consensus 192 wd~~~~~~~~~~~~~~~~~V~~v~~sp~g-~~la~gs~dg~I~iwd~~~~-------~~~~~~~~h~~~V~~l~--~~~~ 261 (474)
|+...--+.++. .|...|..++.++.. .++++|+.||+|++|+...- +...++.-...++.++. .+++
T Consensus 1034 W~p~G~lVAhL~--Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNPRGILVAHLH--EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCccceEeehhh--hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 665433333333 678888888888755 99999999999999997531 22233333344555554 4579
Q ss_pred EEEEEeCCCcEEEEECcCCc--c----eEeeecCcC-CCEEE-EEEec-CCC-EEEEEeCCCcEEEEECCCCcceEEEc-
Q 011971 262 LLSSGSRDKSILQRDIRAQE--D----FVSKLSGHK-SEVCG-LKWSY-DNR-ELASGGNDNRLFVWNQHSTQPVLKYC- 330 (474)
Q Consensus 262 ~l~sgs~dg~I~iwd~~~~~--~----~~~~~~~h~-~~V~~-l~~sp-d~~-~lasg~~Dg~v~iwd~~~~~~~~~~~- 330 (474)
.++.++.||.|.+.++.... . .......+. +.+.+ .++.. .+. .|+.+..-+.|..||++......+++
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 99999999999999987622 1 111112222 22333 33332 333 68888888999999999877666554
Q ss_pred -cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC--CCeEEEEEcCCCC---eEEEEEec-CCCeE
Q 011971 331 -EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG--SQVCNLVWSKNVN---ELVSTHGY-SQNQI 403 (474)
Q Consensus 331 -~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~--~~v~~l~~s~~~~---~l~~~~g~-~dg~I 403 (474)
...+.|++++.+|.+. .++.| +..|.+.+||++-+..+..+.++ .++..+..++-.. ..+++ |. ..+.|
T Consensus 1192 ~~~hG~vTSi~idp~~~-WlviG--ts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~-~~~~~nev 1267 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCN-WLVIG--TSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSA-GSSSNNEV 1267 (1431)
T ss_pred CccccceeEEEecCCce-EEEEe--cCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEe-cccCCCce
Confidence 3457899999999998 45554 48999999999999988877754 5677777776444 44444 55 78999
Q ss_pred EEEECCCCceeEEEcCC-------------------CccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 011971 404 IVWRYPTMSKLATLTGH-------------------TFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKS 456 (474)
Q Consensus 404 ~iwd~~~~~~~~~l~~h-------------------~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~ 456 (474)
.+|++.++..-..+... .-.....++..-+..+++|+.|..||.||.......
T Consensus 1268 s~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 99999988665555322 111223334444568999999999999999876655
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.60 E-value=6.9e-14 Score=136.16 Aligned_cols=260 Identities=17% Similarity=0.260 Sum_probs=179.9
Q ss_pred CcEEEEEcCCeEEEEeCCCCCEEE--EEec-CCCCCEEEEEE-----cCCCCEEEEEeCCCcEEEecCCCCeEEEEec--
Q 011971 178 HNVLAVGLGNCVYLWNACSSKVTK--LCDL-GIDDSVCSVGW-----ANRNTHLAVGTSHGKVQIWDASRCKRVRTME-- 247 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~~~~~~--~~~~-~~~~~V~~v~~-----sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~-- 247 (474)
+..|....+..+|+|+...+.... +-.. -.....+|-+| .+.+--|++|-..|.|++.|....+..+.+.
T Consensus 135 gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~ 214 (636)
T KOG2394|consen 135 GDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEE 214 (636)
T ss_pred CCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhc
Confidence 455666667788999887432111 1000 01123344445 3567778899999999999976532222121
Q ss_pred --CCCCcEEEEEec---CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011971 248 --GHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (474)
Q Consensus 248 --~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~ 322 (474)
-....|+|+.|- ...++.+-.+|.+.+||..... +- ...+.. ..+++..++.....+ ..+
T Consensus 215 r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-------~~-t~p~~~-~~k~~~~f~i~t~ks------k~~ 279 (636)
T KOG2394|consen 215 RLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-------GA-TAPSYQ-ALKDGDQFAILTSKS------KKT 279 (636)
T ss_pred ccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-------cC-CCCccc-ccCCCCeeEEeeeec------ccc
Confidence 234789999996 4789999999999999872111 00 111111 123555555433211 112
Q ss_pred CcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCC
Q 011971 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQN 401 (474)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg 401 (474)
..++..+.-..+.|..++|+|||.+|...+ .||.+||||..+.+++..++ --+...|++|||||+++++ |++|.
T Consensus 280 rNPv~~w~~~~g~in~f~FS~DG~~LA~VS---qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvt--GGEDD 354 (636)
T KOG2394|consen 280 RNPVARWHIGEGSINEFAFSPDGKYLATVS---QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVT--GGEDD 354 (636)
T ss_pred CCccceeEeccccccceeEcCCCceEEEEe---cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEe--cCCcc
Confidence 256666655667999999999998665554 89999999999887766655 3467899999999999999 99999
Q ss_pred eEEEEECCCCceeEEEcCCCccEEEEEECC-----------------------------------CC-------------
Q 011971 402 QIIVWRYPTMSKLATLTGHTFRVLYLAISP-----------------------------------DG------------- 433 (474)
Q Consensus 402 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-----------------------------------dg------------- 433 (474)
-|.||.+...+.++.-++|...|..++|.| ++
T Consensus 355 LVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~ 434 (636)
T KOG2394|consen 355 LVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVT 434 (636)
T ss_pred eEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceE
Confidence 999999999999999999999999999972 01
Q ss_pred CEEEEEeCCCcEEEEeCCCCCCCC
Q 011971 434 QTIVTGAGDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 434 ~~l~t~s~Dg~I~iW~l~~~~~~~ 457 (474)
..|.+.+.|-.+.+||+.......
T Consensus 435 YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 435 YRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred EEeecccccceEEEEecchhhccc
Confidence 246678889999999998765544
No 217
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1e-12 Score=134.47 Aligned_cols=219 Identities=15% Similarity=0.125 Sum_probs=154.1
Q ss_pred cEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeC---CCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCE
Q 011971 231 KVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSR---DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305 (474)
Q Consensus 231 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~---dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 305 (474)
.|.++|.. +...+.+..|...+.+.+|++ +.|+..+. +..|.+||+.++. ...+..+.+.+....|+|||+.
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~--~~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ--RELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc--EEEeecCCCcccCcEECCCCCE
Confidence 78888875 445566777888999999984 56666553 4689999998765 3345556667888999999998
Q ss_pred EE-EEeCCCc--EEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEE
Q 011971 306 LA-SGGNDNR--LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCN 382 (474)
Q Consensus 306 la-sg~~Dg~--v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~ 382 (474)
|+ +.+.++. |++||+.+++. ..+..+........|+|+|+.++.+.....+..|.+||+.++...........+..
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~ 338 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYST 338 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccC
Confidence 76 4455554 88889987754 45666677778899999999887765321234688999887765444434555777
Q ss_pred EEEcCCCCeEEEEEec-CCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCC------CcEEEEeCCCCCC
Q 011971 383 LVWSKNVNELVSTHGY-SQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGD------ETLRFWNVFPSPK 455 (474)
Q Consensus 383 l~~s~~~~~l~~~~g~-~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~D------g~I~iW~l~~~~~ 455 (474)
..|+|+|+.|+.+... .+..|.+||...+.. ..+. ....+..+.|+|||+.|+..+.+ ..|+++++..+..
T Consensus 339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred eEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 8999999999886422 224788888755433 3333 22346788999999988765543 2577888866544
No 218
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.59 E-value=2e-12 Score=128.40 Aligned_cols=284 Identities=13% Similarity=0.114 Sum_probs=183.1
Q ss_pred eeeCCC-C-cEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEecCCCCeEEEEecC
Q 011971 172 LVDWSS-H-NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-SHGKVQIWDASRCKRVRTMEG 248 (474)
Q Consensus 172 ~l~~s~-~-~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs-~dg~I~iwd~~~~~~~~~~~~ 248 (474)
.+.+++ + .+++++.|+.|.++|+.+++++..+..+ ....++++++||++++++. ..+.+.|+|.++.+.++.+..
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence 355676 4 3556667899999999999999888654 4678999999999999876 488999999999999888753
Q ss_pred -------CCCcEEEEEecC--C-EEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEE-eCCCcEEE
Q 011971 249 -------HRLRVGALAWSS--S-LLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASG-GNDNRLFV 317 (474)
Q Consensus 249 -------h~~~V~~l~~~~--~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg-~~Dg~v~i 317 (474)
...++..+..++ . ++++.-+.+.|.+.|......................|+|++++++++ ..++.|-+
T Consensus 119 ~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~v 198 (369)
T PF02239_consen 119 GGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAV 198 (369)
T ss_dssp -EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEE
T ss_pred ccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEE
Confidence 234677776552 4 445555568898889877654444444445667889999999987665 55778999
Q ss_pred EECCCCcceEEEc----cCCCcEEEEEECCCCCcEEEEecCC-------CCCeEEEEECCCCceeeeecCCCCeEEEEEc
Q 011971 318 WNQHSTQPVLKYC----EHTAAVKAIAWSPHLHGLLASGGGT-------ADRCIRFWNTTTNTHLSCMDTGSQVCNLVWS 386 (474)
Q Consensus 318 wd~~~~~~~~~~~----~h~~~V~~l~~sp~~~~ll~sg~Gt-------~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s 386 (474)
+|..+++.+..+. .|...+..+ .+|....+.++++.. ....+.+||..+.+.+..+...+.-.-+..+
T Consensus 199 iD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~th 277 (369)
T PF02239_consen 199 IDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTH 277 (369)
T ss_dssp EETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--
T ss_pred EeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecC
Confidence 9999987776553 244444333 222221122222100 1234557888899999999976666888899
Q ss_pred CCCCeEEEEE--ecCCCeEEEEECCCCceeEEEcCC-CccEEEEEECCCCCEEEEEeCC--CcEEEEeCCCCCCCCC
Q 011971 387 KNVNELVSTH--GYSQNQIIVWRYPTMSKLATLTGH-TFRVLYLAISPDGQTIVTGAGD--ETLRFWNVFPSPKSQN 458 (474)
Q Consensus 387 ~~~~~l~~~~--g~~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~t~s~D--g~I~iW~l~~~~~~~~ 458 (474)
|+++++.+.. +...+.|.++|..+.+.+..+... ..++.++.|++||+.+..+..+ +.|.+||..+.+....
T Consensus 278 P~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 278 PDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKR 354 (369)
T ss_dssp TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred CCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Confidence 9999999841 134689999999999888887533 2359999999999977655443 4699999987765443
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=6e-15 Score=141.17 Aligned_cols=263 Identities=18% Similarity=0.250 Sum_probs=205.9
Q ss_pred cceeeeeCCC--CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE
Q 011971 168 FYLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 168 ~~v~~l~~s~--~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~ 245 (474)
|--..++++. ..+|.+|.-|.|-.+|..++++...+ .-...|..+.|-.+.+++|++- ...+.||| ..|..++.
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD-~~GtElHC 205 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--NVMETVRDVTFLHNEQFFAVAQ-KKYVYVYD-NNGTELHC 205 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeee--ehhhhhhhhhhhcchHHHHhhh-hceEEEec-CCCcEEee
Confidence 4344566665 45777778899999999999886665 3467899999999999888875 56899999 55777777
Q ss_pred ecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011971 246 MEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST 323 (474)
Q Consensus 246 ~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~ 323 (474)
++.| .+|..|.|-+ -+|++++..|.+..-|+.+++ .+..+..-.+.+..++-+|-+..+-+|...|+|.+|.....
T Consensus 206 lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk-lVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK-LVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred hhhc-CchhhhcccchhheeeecccCCceEEEeechhh-hhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 7755 4688899987 467888899999999999987 57777777788999999999999999999999999999999
Q ss_pred cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeE
Q 011971 324 QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQI 403 (474)
Q Consensus 324 ~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I 403 (474)
+++..+-.|.++|.+|++.+.|.+++.+| .|+.++|||+++...+.++........+.+|..|-..+. ....|
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG---~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~----~G~~v 356 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMATTG---LDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALS----YGDHV 356 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEeecc---cccceeEeeeccccccceeecCCCccccccccccceeee----cCCee
Confidence 99999999999999999999998766665 799999999999998888888788888999876644333 34678
Q ss_pred EEEECC-C--CceeEEEcCC--CccEEEEEECCCCCEEEEEeCCC
Q 011971 404 IVWRYP-T--MSKLATLTGH--TFRVLYLAISPDGQTIVTGAGDE 443 (474)
Q Consensus 404 ~iwd~~-~--~~~~~~l~~h--~~~V~~l~~spdg~~l~t~s~Dg 443 (474)
.||.-. . +..-..+-.| .+.|..+.|.|-...|-.|..-|
T Consensus 357 ~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 357 QIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred eeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 888632 1 1111112222 34788999998555554444433
No 220
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.57 E-value=2.7e-11 Score=120.12 Aligned_cols=264 Identities=12% Similarity=0.123 Sum_probs=180.0
Q ss_pred CeEEEEeC--CCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeC----CCcEEEecCCCC--e--EEEEecCCCCcEEEE
Q 011971 187 NCVYLWNA--CSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS----HGKVQIWDASRC--K--RVRTMEGHRLRVGAL 256 (474)
Q Consensus 187 ~~V~lwd~--~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~----dg~I~iwd~~~~--~--~~~~~~~h~~~V~~l 256 (474)
+.|++|++ .++++..+...........++++|++++|.+... +|.|..|++... + .+............+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 68888877 6666655543334566788999999999999877 468999988764 3 333333344455677
Q ss_pred Eec--CCEEEEEe-CCCcEEEEECcCCcceEee--ec-----------CcCCCEEEEEEecCCCEEEEEeC-CCcEEEEE
Q 011971 257 AWS--SSLLSSGS-RDKSILQRDIRAQEDFVSK--LS-----------GHKSEVCGLKWSYDNRELASGGN-DNRLFVWN 319 (474)
Q Consensus 257 ~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~~~--~~-----------~h~~~V~~l~~spd~~~lasg~~-Dg~v~iwd 319 (474)
+.+ +.+|+++. .+|.|.++++.....+... .. .......++.|+|+++++++... ...|.+|+
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence 775 46666665 5899999999875422221 11 12355789999999998887653 45799999
Q ss_pred CCCCc--c--eEEEc-cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECC--CCce--eeeecC-------CCCeEEE
Q 011971 320 QHSTQ--P--VLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT--TNTH--LSCMDT-------GSQVCNL 383 (474)
Q Consensus 320 ~~~~~--~--~~~~~-~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~--~~~~--~~~~~~-------~~~v~~l 383 (474)
+.... . ...+. ........++|+|+++.+++... .++.|.++++. ++.. +..+.. ......+
T Consensus 173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e--~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 250 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE--LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI 250 (345)
T ss_dssp E-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET--TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred EeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC--CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence 87654 2 12222 34566889999999998888875 78999999988 4422 222221 1257889
Q ss_pred EEcCCCCeEEEEEecCCCeEEEEECCC--C--ceeEEEcCCCccEEEEEECCCCCEEEEEe-CCCcEEEEeCCCC
Q 011971 384 VWSKNVNELVSTHGYSQNQIIVWRYPT--M--SKLATLTGHTFRVLYLAISPDGQTIVTGA-GDETLRFWNVFPS 453 (474)
Q Consensus 384 ~~s~~~~~l~~~~g~~dg~I~iwd~~~--~--~~~~~l~~h~~~V~~l~~spdg~~l~t~s-~Dg~I~iW~l~~~ 453 (474)
.++|+|++|+++ ....+.|.+|++.. + +.+..+.........++++|+|++|+++. .++.|.+|+++..
T Consensus 251 ~ispdg~~lyvs-nr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 251 AISPDGRFLYVS-NRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp EE-TTSSEEEEE-ECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred EEecCCCEEEEE-eccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence 999999999997 44688999999932 2 33444443344578999999999998876 5678999988643
No 221
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.5e-12 Score=133.22 Aligned_cols=218 Identities=17% Similarity=0.145 Sum_probs=151.0
Q ss_pred CcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCC---CcEEEEECcCCcceEeeecCcCCCEEEEEEecCCC
Q 011971 230 GKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRD---KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR 304 (474)
Q Consensus 230 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~ 304 (474)
..|.+||... ...+.+..+...+.+.+|++ +.|+..+.+ ..|.+||+.++.. ..+..+.+...++.|+|||+
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCC
Confidence 3689999854 44455666778899999984 677766633 4699999987652 33334445556789999999
Q ss_pred EEEE-EeCCC--cEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCC--eEEEEECCCCceeeeecCCCC
Q 011971 305 ELAS-GGNDN--RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR--CIRFWNTTTNTHLSCMDTGSQ 379 (474)
Q Consensus 305 ~las-g~~Dg--~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~--~I~iwd~~~~~~~~~~~~~~~ 379 (474)
.|+. .+.+| .|++||+.+++. ..+..+......++|+|+++.++++.. .++ .|.++|+.+++.......+..
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd--~~g~~~iy~~dl~~g~~~~lt~~g~~ 337 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSD--RGGRPQIYRVAASGGSAERLTFQGNY 337 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEEC--CCCCceEEEEECCCCCeEEeecCCCC
Confidence 8764 44555 599999988764 455566656678999999998877753 333 477778877765443333445
Q ss_pred eEEEEEcCCCCeEEEEEecC-CCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCC---CcEEEEeCCCCCC
Q 011971 380 VCNLVWSKNVNELVSTHGYS-QNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGD---ETLRFWNVFPSPK 455 (474)
Q Consensus 380 v~~l~~s~~~~~l~~~~g~~-dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~D---g~I~iW~l~~~~~ 455 (474)
.....|+|+|+.++.++... ...|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|.++++.....
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~ 415 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVR 415 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 56789999999998864321 236999999877654 333 22345567999999988876653 4588888865543
No 222
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=2.7e-12 Score=126.02 Aligned_cols=278 Identities=14% Similarity=0.191 Sum_probs=188.7
Q ss_pred eeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe-----C-----CCcEEEecCC
Q 011971 170 LNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT-----S-----HGKVQIWDAS 238 (474)
Q Consensus 170 v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs-----~-----dg~I~iwd~~ 238 (474)
++..++++ +.++|.+.+..|.|++..++..+.... .. .+.++.|+|-|.+|.+-- . .-.+++|+++
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~--~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve 113 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVE--LK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE 113 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEec--cc-eeeeeeecccccccccccccccccCCCCCCCceeeeeec
Confidence 66777787 889999999999999999887433332 23 899999999999987621 1 2357899999
Q ss_pred CCeEEEEecCCCCcEEEEEecC-CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCC--CEEEE-----Ee
Q 011971 239 RCKRVRTMEGHRLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDN--RELAS-----GG 310 (474)
Q Consensus 239 ~~~~~~~~~~h~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~--~~las-----g~ 310 (474)
++.....+......-+++.|+. +.|++--..+.+.+|++.........+ |...|..+.++|.+ ..+|+ +|
T Consensus 114 t~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kG 191 (566)
T KOG2315|consen 114 TGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKG 191 (566)
T ss_pred cceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeee--eccceeeEEecCCCCCceEEEEccCCCC
Confidence 9665555543333336888884 455555566789999998865444443 67889999999863 34443 34
Q ss_pred CCCcEEEEECCCCcceEEE---ccCCCcEEEEEECCCCCcEEEEecCCC---------CCeEEEEECCCCceeeeecCCC
Q 011971 311 NDNRLFVWNQHSTQPVLKY---CEHTAAVKAIAWSPHLHGLLASGGGTA---------DRCIRFWNTTTNTHLSCMDTGS 378 (474)
Q Consensus 311 ~Dg~v~iwd~~~~~~~~~~---~~h~~~V~~l~~sp~~~~ll~sg~Gt~---------d~~I~iwd~~~~~~~~~~~~~~ 378 (474)
.-..|+||.......-..+ .-..+.--.+.|.+-|..||+.....- ..++++.++....+...+...+
T Consensus 192 aPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~G 271 (566)
T KOG2315|consen 192 APASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEG 271 (566)
T ss_pred CCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCC
Confidence 5567999987632211111 012223346788888877766553112 2458888887556666666667
Q ss_pred CeEEEEEcCCCCeEEEEEec------------------------------------------CCCeEEEEECCCCceeEE
Q 011971 379 QVCNLVWSKNVNELVSTHGY------------------------------------------SQNQIIVWRYPTMSKLAT 416 (474)
Q Consensus 379 ~v~~l~~s~~~~~l~~~~g~------------------------------------------~dg~I~iwd~~~~~~~~~ 416 (474)
+|.++.|++++++++++.|+ -.|.|.|||+.+.+++..
T Consensus 272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~ 351 (566)
T KOG2315|consen 272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK 351 (566)
T ss_pred CceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccc
Confidence 77777777777666665544 346667777777777766
Q ss_pred EcCCCccEEEEEECCCCCEEEEEeC------CCcEEEEeCCCCC
Q 011971 417 LTGHTFRVLYLAISPDGQTIVTGAG------DETLRFWNVFPSP 454 (474)
Q Consensus 417 l~~h~~~V~~l~~spdg~~l~t~s~------Dg~I~iW~l~~~~ 454 (474)
+..-.. +.+.|+|||++|+|++. |+.++||++....
T Consensus 352 ~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 352 FKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred cccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 654433 45799999999999864 7889999987654
No 223
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.56 E-value=6.1e-13 Score=120.31 Aligned_cols=142 Identities=15% Similarity=0.320 Sum_probs=107.0
Q ss_pred cEEEEECcCCcceEeeecC-cCCCEEEEEEecCCCEEEEE--eCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCc
Q 011971 271 SILQRDIRAQEDFVSKLSG-HKSEVCGLKWSYDNRELASG--GNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHG 347 (474)
Q Consensus 271 ~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~spd~~~lasg--~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 347 (474)
...+|.++........+.- ..++|.+++|+|+|+.||+. ..++.|.+||++ ++.+..+ +...+..+.|+|+|+.
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~--~~~~~n~i~wsP~G~~ 114 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF--GTQPRNTISWSPDGRF 114 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee--cCCCceEEEECCCCCE
Confidence 4555555444333444432 34569999999999987654 457799999997 6666666 3567789999999998
Q ss_pred EEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEec----CCCeEEEEECCCCceeEEE
Q 011971 348 LLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY----SQNQIIVWRYPTMSKLATL 417 (474)
Q Consensus 348 ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~----~dg~I~iwd~~~~~~~~~l 417 (474)
++++|.|...|.|.+||+++.+.+....+.. +..++|+|+|+++++++.. .|+.++||++. |+.+...
T Consensus 115 l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 115 LVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 8887765567899999999988888876654 7899999999999997533 48899999984 5555543
No 224
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.56 E-value=3.4e-13 Score=123.89 Aligned_cols=202 Identities=20% Similarity=0.302 Sum_probs=164.8
Q ss_pred CCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCc--ceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC-
Q 011971 248 GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQE--DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS- 322 (474)
Q Consensus 248 ~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~- 322 (474)
--..+|+|.+|+. ..++.+.....|.||.....+ +...++..|...|++++|+|..+.|++|+.|..-+||....
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 3457899999984 689999999999999887665 45778899999999999999999999999999999999843
Q ss_pred C--cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee-----eeecCCCCeEEEEEcCCCCeEEEE
Q 011971 323 T--QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL-----SCMDTGSQVCNLVWSKNVNELVST 395 (474)
Q Consensus 323 ~--~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~-----~~~~~~~~v~~l~~s~~~~~l~~~ 395 (474)
+ ++...+..++.+++++.|+|.++ .+++|+ .-+.|.+|-++...-- ......+.|.++.|+|++-.|++
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgS--gar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa- 163 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKEN-KFAVGS--GARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA- 163 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCc-eEEecc--CccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc-
Confidence 3 56667778999999999999976 677776 4678888876654332 12235678999999999999988
Q ss_pred EecCCCeEEEEEC------------------CCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 396 HGYSQNQIIVWRY------------------PTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 396 ~g~~dg~I~iwd~------------------~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
|+.|+..+||.. +-++.+.++....+.|..+.|+|+|..|+-.+.|+++.+=|.....
T Consensus 164 -Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 164 -GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred -cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 999999999874 1134455555566789999999999999999999999998877664
No 225
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=4e-13 Score=126.47 Aligned_cols=217 Identities=15% Similarity=0.208 Sum_probs=172.4
Q ss_pred eeeCCCCcEEEEEcCCeEEEEeCCCCC--EEEEEecCCCCCEEEEEEcCCCC-EEEEEeCC--CcEEEecCCCCeEEEEe
Q 011971 172 LVDWSSHNVLAVGLGNCVYLWNACSSK--VTKLCDLGIDDSVCSVGWANRNT-HLAVGTSH--GKVQIWDASRCKRVRTM 246 (474)
Q Consensus 172 ~l~~s~~~~la~~~d~~V~lwd~~~~~--~~~~~~~~~~~~V~~v~~sp~g~-~la~gs~d--g~I~iwd~~~~~~~~~~ 246 (474)
.+....+.++++-.+|.+.+|....+. -..+..+.....+..|.-++... .+|+|+.. ..+.|||++..+.+..-
T Consensus 110 gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~a 189 (412)
T KOG3881|consen 110 GLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSA 189 (412)
T ss_pred chhhcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeec
Confidence 334445678888889999999988443 11222222335677777777555 55558888 78999999988766554
Q ss_pred cCC---------CCcEEEEEec----CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCC
Q 011971 247 EGH---------RLRVGALAWS----SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN 313 (474)
Q Consensus 247 ~~h---------~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg 313 (474)
+.- .-.++++.|- +..|++++.-+.+++||.+.+..++..+.-....|+++...|+++++++|..-+
T Consensus 190 KNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g 269 (412)
T KOG3881|consen 190 KNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKG 269 (412)
T ss_pred cCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccc
Confidence 321 1234556664 358999999999999999998888999888899999999999999999999999
Q ss_pred cEEEEECCCCcceEE-EccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCe
Q 011971 314 RLFVWNQHSTQPVLK-YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNE 391 (474)
Q Consensus 314 ~v~iwd~~~~~~~~~-~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~ 391 (474)
.+..||++.++.... +.+..+.|.+|..+|..+ +++++| -|+.+||+|+.+.+++..+...+.++++.+.++-+.
T Consensus 270 ~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~las~G--LDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~n~ 345 (412)
T KOG3881|consen 270 QLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLASCG--LDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDVNI 345 (412)
T ss_pred hhheecccCceeeccccCCccCCcceEEEcCCCc-eEEeec--cceeEEEeecccchhhhhhhhhccccEEEecCCccc
Confidence 999999999988766 788899999999999876 667766 899999999999888888888889999888765443
No 226
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.3e-12 Score=128.28 Aligned_cols=241 Identities=17% Similarity=0.262 Sum_probs=179.1
Q ss_pred ecCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEecCCCCeEEE----------------------------EecCC-----
Q 011971 204 DLGIDDSVCSVGWANRNTHL-AVGTSHGKVQIWDASRCKRVR----------------------------TMEGH----- 249 (474)
Q Consensus 204 ~~~~~~~V~~v~~sp~g~~l-a~gs~dg~I~iwd~~~~~~~~----------------------------~~~~h----- 249 (474)
++++....+.|..+|||+|+ |+|...-.|++||+....+.. .+.-|
T Consensus 47 dfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 47 DFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred hcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 34778889999999999965 667778899999986532211 01111
Q ss_pred --CCcE----EEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011971 250 --RLRV----GALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (474)
Q Consensus 250 --~~~V----~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~ 321 (474)
..+| .+|+++ .--|++++....|+-+++..+. .+..+....+.++++..++-..+|++|+.+|.|..||.+
T Consensus 127 hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr-fL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 127 HYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR-FLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eeeeecCcCCccccccCCCccEEEeecCcceEEEEccccc-cccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 1111 223333 1235555556678888888776 677777777899999999999999999999999999999
Q ss_pred CCcceEEEc------cCCC-----cEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC--CCeEEEEEcCC
Q 011971 322 STQPVLKYC------EHTA-----AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG--SQVCNLVWSKN 388 (474)
Q Consensus 322 ~~~~~~~~~------~h~~-----~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~--~~v~~l~~s~~ 388 (474)
....+..+. .|.+ .|+++.|+.+|-. +++ |+.+|.+.|||+++.+++..-+|. .+|..+.|.+.
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~-~aV--Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH-VAV--GTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCcee-EEe--eccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 877665553 2333 4999999988643 333 468999999999999988777765 46888999776
Q ss_pred --CCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 389 --VNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 389 --~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
++.+++ .....++|||-.+++....+... ..+..+++-|++.++++|-.++.+..|=+..
T Consensus 283 ~~q~~v~S---~Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 283 DQQNKVVS---MDKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred CCCceEEe---cchHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 344554 36778999999999999888754 4499999999999999998888777665543
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=8.9e-12 Score=127.09 Aligned_cols=220 Identities=16% Similarity=0.133 Sum_probs=149.4
Q ss_pred cEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEe---CCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCE
Q 011971 231 KVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGS---RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305 (474)
Q Consensus 231 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 305 (474)
.|.+||...... +.+..+...+.+.+|++ +.|+..+ .+..|.+||+.+++ ...+......+..+.|+|||+.
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~--~~~l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC--eEEccCCCCCcCCeEECCCCCE
Confidence 688998875443 33445677899999985 5666543 34579999998765 2223333344557899999998
Q ss_pred EEEE-eCCC--cEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCC--eEEEEECCCCceeeeecCCCCe
Q 011971 306 LASG-GNDN--RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR--CIRFWNTTTNTHLSCMDTGSQV 380 (474)
Q Consensus 306 lasg-~~Dg--~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~--~I~iwd~~~~~~~~~~~~~~~v 380 (474)
|+.. +.+| .|++||+.+++.. .+..+...+....|+|+|+.|+++.. .++ .|.++|+.++............
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~--~~g~~~Iy~~d~~~g~~~~lt~~~~~~ 333 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSD--QAGRPQVYKVNINGGAPQRITWEGSQN 333 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeC--CCCCceEEEEECCCCCeEEeecCCCCc
Confidence 8865 3344 5999999887654 44455567789999999998877653 333 4556677777654433344456
Q ss_pred EEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCc---EEEEeCCCCCCC
Q 011971 381 CNLVWSKNVNELVSTHGY-SQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDET---LRFWNVFPSPKS 456 (474)
Q Consensus 381 ~~l~~s~~~~~l~~~~g~-~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~---I~iW~l~~~~~~ 456 (474)
....|+|+|+.++.++.. ....|.+||+.+++.. .+... .......|+|||++|+.++.++. +.+|++......
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~ 411 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA 411 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeE
Confidence 678999999999886321 2246888999877643 34322 22346789999999999888765 778888665544
Q ss_pred CC
Q 011971 457 QN 458 (474)
Q Consensus 457 ~~ 458 (474)
..
T Consensus 412 ~l 413 (429)
T PRK03629 412 RL 413 (429)
T ss_pred EC
Confidence 33
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.54 E-value=2.9e-14 Score=136.55 Aligned_cols=231 Identities=13% Similarity=0.175 Sum_probs=188.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcceEeee
Q 011971 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKL 287 (474)
Q Consensus 209 ~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 287 (474)
..-..+.++.+|.+|+.|+..|.|-.+|..++++...+. -...|.++.|- ...+++......++|||-...+ +..+
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtE--lHCl 206 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTE--LHCL 206 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhhhceEEEecCCCcE--Eeeh
Confidence 345678999999999999999999999999999888776 34568888884 5566666777889999965433 4444
Q ss_pred cCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCC
Q 011971 288 SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (474)
Q Consensus 288 ~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~ 367 (474)
..| ..|..+.|-|..-+|++++..|.+..-|+.+|+.+..+....+.+..++-.|... ++-.|. ..|+|.+|....
T Consensus 207 k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na-Vih~Gh--snGtVSlWSP~s 282 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA-VIHLGH--SNGTVSLWSPNS 282 (545)
T ss_pred hhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc-eEEEcC--CCceEEecCCCC
Confidence 444 5689999999999999999999999999999999999988889999999999854 777765 799999999988
Q ss_pred Cceeeee-cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEE
Q 011971 368 NTHLSCM-DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLR 446 (474)
Q Consensus 368 ~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~ 446 (474)
.+.+..+ .|.+.|.++++.++|+++++ .+.|..++|||++....+.++.. ......+++|..| .||. +....|.
T Consensus 283 kePLvKiLcH~g~V~siAv~~~G~YMaT--tG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~-~~G~~v~ 357 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIAVDRGGRYMAT--TGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLAL-SYGDHVQ 357 (545)
T ss_pred cchHHHHHhcCCCcceEEECCCCcEEee--cccccceeEeeeccccccceeec-CCCcccccccccc-ceee-ecCCeee
Confidence 8776554 47889999999999999999 56999999999999887777655 4556788898766 4444 4445889
Q ss_pred EEeCC
Q 011971 447 FWNVF 451 (474)
Q Consensus 447 iW~l~ 451 (474)
+|.=.
T Consensus 358 iw~d~ 362 (545)
T KOG1272|consen 358 IWKDA 362 (545)
T ss_pred eehhh
Confidence 99644
No 229
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=7.7e-14 Score=134.41 Aligned_cols=249 Identities=20% Similarity=0.302 Sum_probs=195.4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec-CCCCcEEEEEecC----CEEEEEeCCCcEEEEECcCC
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME-GHRLRVGALAWSS----SLLSSGSRDKSILQRDIRAQ 280 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~-~h~~~V~~l~~~~----~~l~sgs~dg~I~iwd~~~~ 280 (474)
+|.+.|..|.|...|..|++|+.|..|.+||...++....+. +|...|..-.|-| ..+++.+.||.|++=.+...
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET 219 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence 789999999999999999999999999999999887766654 7998888887753 67999999999998877654
Q ss_pred cce--EeeecCcCCCEEEEEEecCC-CEEEEEeCCCcEEEEECCCCcceEEEc---cCCC---cEEEEEECCCCCcEEEE
Q 011971 281 EDF--VSKLSGHKSEVCGLKWSYDN-RELASGGNDNRLFVWNQHSTQPVLKYC---EHTA---AVKAIAWSPHLHGLLAS 351 (474)
Q Consensus 281 ~~~--~~~~~~h~~~V~~l~~spd~-~~lasg~~Dg~v~iwd~~~~~~~~~~~---~h~~---~V~~l~~sp~~~~ll~s 351 (474)
..+ ...+..|.+.|.-++.-|+. .-|.+++.|+.+.-+|++...+...+. .+.. ....++..|...+.+++
T Consensus 220 ~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faV 299 (559)
T KOG1334|consen 220 GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAV 299 (559)
T ss_pred cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccccc
Confidence 422 45567899999999999865 568999999999999999876654442 2333 57889999999999999
Q ss_pred ecCCCCCeEEEEECCCCcee------eee-------cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC--CC-----
Q 011971 352 GGGTADRCIRFWNTTTNTHL------SCM-------DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP--TM----- 411 (474)
Q Consensus 352 g~Gt~d~~I~iwd~~~~~~~------~~~-------~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~--~~----- 411 (474)
|| .|..+++||.+.-... ..+ .....|++++|+.++..|++ .+.|-.|+++.-. .|
T Consensus 300 gG--~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa--SYnDe~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 300 GG--SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA--SYNDEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred CC--hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee--eecccceEEeccccccCCCCCC
Confidence 87 8999999998753221 111 23456999999999999998 7899999999532 12
Q ss_pred -----ceeE-EEcCCCc--cEEEEEE-CCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 011971 412 -----SKLA-TLTGHTF--RVLYLAI-SPDGQTIVTGAGDETLRFWNVFPSPKSQN 458 (474)
Q Consensus 412 -----~~~~-~l~~h~~--~V~~l~~-spdg~~l~t~s~Dg~I~iW~l~~~~~~~~ 458 (474)
..+. .++||.. .|..+-| -|...++++|+.-|.|.||+=.++...+-
T Consensus 376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~ 431 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRF 431 (559)
T ss_pred CcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHH
Confidence 1122 3678854 4666654 67889999999999999999877655443
No 230
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.53 E-value=1.1e-11 Score=123.17 Aligned_cols=270 Identities=15% Similarity=0.142 Sum_probs=179.1
Q ss_pred CCcEEEEE--cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEE
Q 011971 177 SHNVLAVG--LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVG 254 (474)
Q Consensus 177 ~~~~la~~--~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~ 254 (474)
..+++.+. .++.|.+.|..+.+++..+..+. ..-..+.++|||+++++++.||.|.++|+.+.+.+.++.... ...
T Consensus 4 ~~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~ 81 (369)
T PF02239_consen 4 TGNLFYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPR 81 (369)
T ss_dssp GGGEEEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEE
T ss_pred CccEEEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccc
Confidence 34555544 47899999999999999886532 234557899999999999999999999999999999987543 356
Q ss_pred EEEec--CCEEEEEe-CCCcEEEEECcCCcceEeeecC-------cCCCEEEEEEecCCCEEEEEeC-CCcEEEEECCCC
Q 011971 255 ALAWS--SSLLSSGS-RDKSILQRDIRAQEDFVSKLSG-------HKSEVCGLKWSYDNRELASGGN-DNRLFVWNQHST 323 (474)
Q Consensus 255 ~l~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~-------h~~~V~~l~~spd~~~lasg~~-Dg~v~iwd~~~~ 323 (474)
.++++ ++++++++ .++.+.++|.++.+ .+..+.. ....+.++..++....++..-. .+.|.+.|....
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle-~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~ 160 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLE-PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP 160 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred eEEEcCCCCEEEEEecCCCceeEecccccc-ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence 67776 56776664 68999999998876 3444322 3457889988898886665554 588989898776
Q ss_pred cceE-EEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCC-----eEE-------EEEcC--C
Q 011971 324 QPVL-KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ-----VCN-------LVWSK--N 388 (474)
Q Consensus 324 ~~~~-~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~-----v~~-------l~~s~--~ 388 (474)
+.+. +............|+|++++++++.. .+..|-++|..+++.+..++.+.. ... ..|.. .
T Consensus 161 ~~~~~~~i~~g~~~~D~~~dpdgry~~va~~--~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~ 238 (369)
T PF02239_consen 161 KNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN--GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGL 238 (369)
T ss_dssp SCEEEEEEE--TTEEEEEE-TTSSEEEEEEG--GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBS
T ss_pred cccceeeecccccccccccCcccceeeeccc--ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccc
Confidence 5443 22234556788999999998888765 577999999999988877654322 222 22322 2
Q ss_pred CCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEE----eCCCcEEEEeCCCCC
Q 011971 389 VNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTG----AGDETLRFWNVFPSP 454 (474)
Q Consensus 389 ~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~----s~Dg~I~iW~l~~~~ 454 (474)
+...+... ....+.+||..+++.+.++...... ..+..+|++++|.+. ...++|.++|..+..
T Consensus 239 ~~~~~~~i--g~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 239 GYFAIPLI--GTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK 305 (369)
T ss_dssp SSSEEEEE--E--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE
T ss_pred cceecccc--cCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc
Confidence 33332322 2345667899999999999877666 788999999999987 455899999998764
No 231
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.53 E-value=7.9e-12 Score=127.41 Aligned_cols=234 Identities=13% Similarity=0.088 Sum_probs=154.5
Q ss_pred eEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEecCCCCeEEEEecCCCCcEEEEEecC--CE
Q 011971 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH---GKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SL 262 (474)
Q Consensus 188 ~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~ 262 (474)
.|+++|........+. .+...+.+.+|+|||++|+.+... ..|.+||+.+++... +..+...+.+++|++ +.
T Consensus 171 ~l~~~d~~g~~~~~l~--~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 171 ELQVADYDGANPQTIT--RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred eEEEEcCCCCCCEEee--cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 6999998766665554 455678999999999999987654 479999998876543 333555667788974 44
Q ss_pred E-EEEeCCC--cEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCC-C--cEEEEECCCCcceEEEccCCCcE
Q 011971 263 L-SSGSRDK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND-N--RLFVWNQHSTQPVLKYCEHTAAV 336 (474)
Q Consensus 263 l-~sgs~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~D-g--~v~iwd~~~~~~~~~~~~h~~~V 336 (474)
| ++.+.++ .|++||+.++. ...+..+........|+||+++|+..+.. + .|+++|+.+++. ..+..+...+
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~ 324 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYN 324 (417)
T ss_pred EEEEECCCCCccEEEEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCc
Confidence 4 4555554 58888887654 34444455555677899999998876653 2 688889887654 3444556667
Q ss_pred EEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCC-CeEEEEECCCCceeE
Q 011971 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQ-NQIIVWRYPTMSKLA 415 (474)
Q Consensus 337 ~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d-g~I~iwd~~~~~~~~ 415 (474)
..+.|+|++..++++........|.+||+.++... .+..........|+|+++.|+.+..... ..+.+.+. ++....
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~ 402 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRA 402 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceee
Confidence 88999999997777763111237899999876543 3332333456689999999888533211 24555553 344445
Q ss_pred EEcCCCccEEEEEE
Q 011971 416 TLTGHTFRVLYLAI 429 (474)
Q Consensus 416 ~l~~h~~~V~~l~~ 429 (474)
.+..+.+.+..++|
T Consensus 403 ~~~~~~g~~~~~~w 416 (417)
T TIGR02800 403 RLPLGNGDVREPAW 416 (417)
T ss_pred ECCCCCCCcCCCCC
Confidence 55444444444444
No 232
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2.3e-11 Score=124.60 Aligned_cols=236 Identities=14% Similarity=0.092 Sum_probs=156.0
Q ss_pred eEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEecCCCCeEEEEecCCCCcEEEEEecC--CE
Q 011971 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH---GKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SL 262 (474)
Q Consensus 188 ~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~ 262 (474)
.|.++|...+....+. .+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|++ +.
T Consensus 180 ~l~~~d~~g~~~~~l~--~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARAVTLL--QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCceEEe--cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCE
Confidence 5888898877665554 456789999999999999876643 368999998876533 333334455688984 45
Q ss_pred EE-EEeCCC--cEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC-C--CcEEEEECCCCcceEEEccCCCcE
Q 011971 263 LS-SGSRDK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-D--NRLFVWNQHSTQPVLKYCEHTAAV 336 (474)
Q Consensus 263 l~-sgs~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~-D--g~v~iwd~~~~~~~~~~~~h~~~V 336 (474)
|+ +.+.+| .|.++|+.++. ...+..+........|+|||+.|+..+. + ..|+++|+.+++.. .+.......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~ 333 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYN 333 (430)
T ss_pred EEEEEccCCCceEEEEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCc
Confidence 54 555555 58888988765 3445556666677899999998877664 2 36888888877643 232222334
Q ss_pred EEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceeE
Q 011971 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGY-SQNQIIVWRYPTMSKLA 415 (474)
Q Consensus 337 ~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~-~dg~I~iwd~~~~~~~~ 415 (474)
....|+|+++.++.+........|.+||+.+++... +..........|+|+|+.++.+... ....|.+++.. +....
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~ 411 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRL 411 (430)
T ss_pred cceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceE
Confidence 467899999988777641112358899998876533 3322233456899999999886321 12356677764 33444
Q ss_pred EEcCCCccEEEEEECC
Q 011971 416 TLTGHTFRVLYLAISP 431 (474)
Q Consensus 416 ~l~~h~~~V~~l~~sp 431 (474)
.+..+.+.+...+|+|
T Consensus 412 ~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 412 PLPTAQGEVREPSWSP 427 (430)
T ss_pred ECcCCCCCcCCCccCC
Confidence 5555556677777876
No 233
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=3.4e-12 Score=120.24 Aligned_cols=243 Identities=12% Similarity=0.149 Sum_probs=183.9
Q ss_pred CCCCCEEEEEEcCCCC--EEEEEeCCCcEEEecCCCCeEEEEe------cCCCCcEEEEEecCCEEEEEeCCCcEEEEEC
Q 011971 206 GIDDSVCSVGWANRNT--HLAVGTSHGKVQIWDASRCKRVRTM------EGHRLRVGALAWSSSLLSSGSRDKSILQRDI 277 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~--~la~gs~dg~I~iwd~~~~~~~~~~------~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~ 277 (474)
.....|++++|.-+++ .|...+.+-.+..+.++.......+ ......|..++.....|++|-.+|.+.+|..
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHD 132 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEec
Confidence 3456788888886653 4444446667777777766554443 3556778888888899999999999999998
Q ss_pred cCCc---ceEeeecCcCCCEEEEEEecCC-CEEEEEeCC--CcEEEEECCCCcceEEEccC---------CCcEEEEEEC
Q 011971 278 RAQE---DFVSKLSGHKSEVCGLKWSYDN-RELASGGND--NRLFVWNQHSTQPVLKYCEH---------TAAVKAIAWS 342 (474)
Q Consensus 278 ~~~~---~~~~~~~~h~~~V~~l~~spd~-~~lasg~~D--g~v~iwd~~~~~~~~~~~~h---------~~~V~~l~~s 342 (474)
..+. .....+..+ ..++.+.-++.. ..+|+||.. +.+.|||+.+.+.+..-+.- .-.++++.|-
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 7433 122333333 446666666644 456679988 88999999988666554321 2345678887
Q ss_pred CC-CCcEEEEecCCCCCeEEEEECCCC-ceeeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEE-Ec
Q 011971 343 PH-LHGLLASGGGTADRCIRFWNTTTN-THLSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLAT-LT 418 (474)
Q Consensus 343 p~-~~~ll~sg~Gt~d~~I~iwd~~~~-~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~-l~ 418 (474)
+. ..+-++++. .-+.+++||++.+ +++.+++ ....+.++...|.++.+++ |...+++..||++.++.+.. +.
T Consensus 212 ~g~~~~~fat~T--~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~--gn~~g~l~~FD~r~~kl~g~~~k 287 (412)
T KOG3881|consen 212 EGSPNYKFATIT--RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYT--GNTKGQLAKFDLRGGKLLGCGLK 287 (412)
T ss_pred CCCCCceEEEEe--cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEE--ecccchhheecccCceeeccccC
Confidence 65 134566654 7899999999875 4566666 4677999999999999999 88999999999999988776 88
Q ss_pred CCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 011971 419 GHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 419 ~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~ 453 (474)
+..+.|.++..+|.+++|++++-|..|||+|+.+.
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 99999999999999999999999999999999984
No 234
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.3e-11 Score=124.65 Aligned_cols=233 Identities=14% Similarity=0.080 Sum_probs=154.3
Q ss_pred eEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-C--cEEEecCCCCeEEEEecCCCCcEEEEEecC--CE
Q 011971 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-G--KVQIWDASRCKRVRTMEGHRLRVGALAWSS--SL 262 (474)
Q Consensus 188 ~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d-g--~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~ 262 (474)
.|+++|........+. .....+.+..|+|||+.|+..+.+ + .|.+||+.+++... +...........|++ +.
T Consensus 199 ~l~i~d~dG~~~~~l~--~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNEQMLL--RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCceEee--cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCE
Confidence 6788888766554443 456788999999999998876543 3 58888988776432 222233344678874 44
Q ss_pred E-EEEeCCCc--EEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC-C--CcEEEEECCCCcceEEEccCCCcE
Q 011971 263 L-SSGSRDKS--ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-D--NRLFVWNQHSTQPVLKYCEHTAAV 336 (474)
Q Consensus 263 l-~sgs~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~-D--g~v~iwd~~~~~~~~~~~~h~~~V 336 (474)
| ++.+.+|. |+++|+.++. ...+..+........|+|||+.|+..+. + ..|+++|+.+++.. .+.......
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~ 352 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQN 352 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCC
Confidence 4 45666775 7777887654 4445555566778899999998877654 3 35777888777643 332222233
Q ss_pred EEEEECCCCCcEEEEecCCCCC--eEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCC--eEEEEECCCCc
Q 011971 337 KAIAWSPHLHGLLASGGGTADR--CIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQN--QIIVWRYPTMS 412 (474)
Q Consensus 337 ~~l~~sp~~~~ll~sg~Gt~d~--~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~ 412 (474)
...+|+|+|+.++++.. .++ .|.++|+.+++... +..........|+|+|+.|+.+.. .++ .+.+++. ++.
T Consensus 353 ~~~~~SpDG~~l~~~~~--~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~~-~~g~~~l~~~~~-~G~ 427 (448)
T PRK04792 353 LGGSITPDGRSMIMVNR--TNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYSTT-YQGKQVLAAVSI-DGR 427 (448)
T ss_pred cCeeECCCCCEEEEEEe--cCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEEe-cCCceEEEEEEC-CCC
Confidence 45799999998877754 333 56678888876533 222222334589999999887643 333 4777776 566
Q ss_pred eeEEEcCCCccEEEEEECC
Q 011971 413 KLATLTGHTFRVLYLAISP 431 (474)
Q Consensus 413 ~~~~l~~h~~~V~~l~~sp 431 (474)
....+..+.+.+...+|+|
T Consensus 428 ~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 428 FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ceEECcCCCCCcCCCccCC
Confidence 6666766667777888887
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.6e-11 Score=125.31 Aligned_cols=215 Identities=17% Similarity=0.139 Sum_probs=140.9
Q ss_pred CcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCC---CcEEEEECcCCcceEeeecCcCCCEEEEEEecCCC
Q 011971 230 GKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRD---KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR 304 (474)
Q Consensus 230 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~ 304 (474)
..|.++|.. +...+.+..+...+.+.+|++ +.|+..+.+ ..|.+||+.++.. ..+......+....|+|||+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 357777764 444555666778899999984 567666543 3599999987762 23333445567899999999
Q ss_pred EEEE-EeCCCcEEEE--ECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEE--ECCCCceeeeecCCCC
Q 011971 305 ELAS-GGNDNRLFVW--NQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW--NTTTNTHLSCMDTGSQ 379 (474)
Q Consensus 305 ~las-g~~Dg~v~iw--d~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iw--d~~~~~~~~~~~~~~~ 379 (474)
.|+. .+.+|...|| |+..+. ...+..+........|+|||+.++++.. .++...+| ++.++........+..
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~--~~g~~~Iy~~~~~~g~~~~lt~~g~~ 329 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSD--RGGAPQIYRMPASGGAAQRVTFTGSY 329 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEec--CCCCcEEEEEECCCCceEEEecCCCC
Confidence 8874 5667765555 555444 4556566666678899999998877653 34555555 5555543332223334
Q ss_pred eEEEEEcCCCCeEEEEEecC-CCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCC---cEEEEeCCC
Q 011971 380 VCNLVWSKNVNELVSTHGYS-QNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDE---TLRFWNVFP 452 (474)
Q Consensus 380 v~~l~~s~~~~~l~~~~g~~-dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg---~I~iW~l~~ 452 (474)
.....|+|+|++++.++... ...|.+||+.+++... +..+ .......|+|||+.|+.++.++ .|++.++..
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g 404 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG 404 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCC
Confidence 45688999999998753211 2379999998876543 3322 2346789999999988776544 355555543
No 236
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.48 E-value=6.2e-12 Score=116.64 Aligned_cols=246 Identities=15% Similarity=0.262 Sum_probs=180.0
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe-----EEEEecCCC------------CcEEEEEec----CCEEE
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK-----RVRTMEGHR------------LRVGALAWS----SSLLS 264 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~-----~~~~~~~h~------------~~V~~l~~~----~~~l~ 264 (474)
...+-|.+|.|...|.+||+|..+|.|.++.-+... ....++.|. ..|..+.|. ...++
T Consensus 23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred chhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 345789999999999999999999999999754322 233344443 467888886 36788
Q ss_pred EEeCCCcEEEEECcCCcceE----------------------------------ee-ecCcCCCEEEEEEecCCCEEEEE
Q 011971 265 SGSRDKSILQRDIRAQEDFV----------------------------------SK-LSGHKSEVCGLKWSYDNRELASG 309 (474)
Q Consensus 265 sgs~dg~I~iwd~~~~~~~~----------------------------------~~-~~~h~~~V~~l~~spd~~~lasg 309 (474)
..+.|.+|++|.+....... .. -.+|.-.|.+|.++.|+..++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 88999999999886432100 00 13578889999999999988886
Q ss_pred eCCCcEEEEECCCCcc---eEEEccC-----CCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee------eeec
Q 011971 310 GNDNRLFVWNQHSTQP---VLKYCEH-----TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL------SCMD 375 (474)
Q Consensus 310 ~~Dg~v~iwd~~~~~~---~~~~~~h-----~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~------~~~~ 375 (474)
. |=.|-+|+++-... +..++.+ ..-|++..|+|....+++-.+ ..|+|++-|++...+. ....
T Consensus 183 D-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS--SKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 183 D-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS--SKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred c-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec--CCCcEEEeechhhhhhcchhhhhccc
Confidence 4 67899999874332 2223333 346889999999887777765 7999999999853221 1110
Q ss_pred -----------CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC-CCCceeEEEcCCCc------------c---EEEEE
Q 011971 376 -----------TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY-PTMSKLATLTGHTF------------R---VLYLA 428 (474)
Q Consensus 376 -----------~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~-~~~~~~~~l~~h~~------------~---V~~l~ 428 (474)
.-+.|..+.|+++|+++++ - .-..|++||+ ...+++.+++.|.. . -..++
T Consensus 260 edp~~rsffseiIsSISDvKFs~sGryils--R-Dyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~ 336 (433)
T KOG1354|consen 260 EDPSSRSFFSEIISSISDVKFSHSGRYILS--R-DYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECS 336 (433)
T ss_pred cCCcchhhHHHHhhhhhceEEccCCcEEEE--e-ccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence 1245889999999999998 2 3479999999 46677777776632 2 24578
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCCCCC
Q 011971 429 ISPDGQTIVTGAGDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 429 ~spdg~~l~t~s~Dg~I~iW~l~~~~~~~ 457 (474)
|+.++.+++||+....++++++..+.+..
T Consensus 337 ~sg~~~~v~TGsy~n~frvf~~~~gsk~d 365 (433)
T KOG1354|consen 337 WSGNDSYVMTGSYNNVFRVFNLARGSKED 365 (433)
T ss_pred EcCCcceEecccccceEEEecCCCCccee
Confidence 99999999999999999999987776543
No 237
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.48 E-value=3.2e-13 Score=120.96 Aligned_cols=157 Identities=25% Similarity=0.362 Sum_probs=123.6
Q ss_pred CCCCCEEEEEEcCC-CC--EEEEEeCCCcEEEecCCCCeE----------EEEecCCCCcEEEEEecC--CEEEEEeCCC
Q 011971 206 GIDDSVCSVGWANR-NT--HLAVGTSHGKVQIWDASRCKR----------VRTMEGHRLRVGALAWSS--SLLSSGSRDK 270 (474)
Q Consensus 206 ~~~~~V~~v~~sp~-g~--~la~gs~dg~I~iwd~~~~~~----------~~~~~~h~~~V~~l~~~~--~~l~sgs~dg 270 (474)
+..+.+.|..|..+ +. +|++|..+|.|.+||+.++.. ......|..+|.++.+.+ +.=++|+.+.
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~d 227 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADD 227 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccc
Confidence 34567888876542 32 677888999999999998733 333457999999999974 5567788888
Q ss_pred cEEEEECcCCcce---EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCc
Q 011971 271 SILQRDIRAQEDF---VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHG 347 (474)
Q Consensus 271 ~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 347 (474)
.+..|.+...... .....-..-.|..+..-||++.+|+++.|+.|+||..++.+++..++.|.+.|++++|+|+..
T Consensus 228 kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~- 306 (323)
T KOG0322|consen 228 KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE- 306 (323)
T ss_pred cceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc-
Confidence 8889988654211 111222334578888999999999999999999999999999999999999999999999965
Q ss_pred EEEEecCCCCCeEEEEEC
Q 011971 348 LLASGGGTADRCIRFWNT 365 (474)
Q Consensus 348 ll~sg~Gt~d~~I~iwd~ 365 (474)
++|+++ .|+.|.+|++
T Consensus 307 lmAaas--kD~rISLWkL 322 (323)
T KOG0322|consen 307 LMAAAS--KDARISLWKL 322 (323)
T ss_pred hhhhcc--CCceEEeeec
Confidence 777766 9999999986
No 238
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=8.2e-13 Score=125.60 Aligned_cols=191 Identities=19% Similarity=0.229 Sum_probs=144.8
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeec-
Q 011971 212 CSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLS- 288 (474)
Q Consensus 212 ~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~- 288 (474)
.+++|+.+|..|++|+.||.++||+..+...+.....|...|.+|.|++ ..|++-+.| ...||+++++.. +....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-LARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-hhhcCC
Confidence 7899999999999999999999999888888888888999999999984 689999999 999999998852 33322
Q ss_pred -CcCCCEEEEEEecCC-----CEEEEEeCCCcEEEEECCCCcc-----eEEEccCCCcEEEEEECCCCCcEEEEecCCCC
Q 011971 289 -GHKSEVCGLKWSYDN-----RELASGGNDNRLFVWNQHSTQP-----VLKYCEHTAAVKAIAWSPHLHGLLASGGGTAD 357 (474)
Q Consensus 289 -~h~~~V~~l~~spd~-----~~lasg~~Dg~v~iwd~~~~~~-----~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d 357 (474)
.-......+.|+.|+ ..++.-..-+.|..||+....- ..+.......|.+++.+++|+ +++.|+ .|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-f~AlGT--~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-FLALGT--MD 302 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-EEEEec--cC
Confidence 223345566777766 2333344455677666543211 112223345799999999998 566654 89
Q ss_pred CeEEEEECCCCceeeeec--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011971 358 RCIRFWNTTTNTHLSCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (474)
Q Consensus 358 ~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 409 (474)
|.|-+++..+.+.++.++ |..-|+.+.|+|+.++++.+ +.+.++.|..+.
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~sv--Ss~~~~~v~~l~ 354 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASV--SSDNEAAVTKLA 354 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccc--ccCCceeEEEEe
Confidence 999999999988888776 66789999999999999994 467777776654
No 239
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.47 E-value=5.3e-12 Score=117.13 Aligned_cols=269 Identities=20% Similarity=0.322 Sum_probs=186.6
Q ss_pred CcEEEEEcCCeEEEEe-CCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecC----CCCeEEEEecCCCCc
Q 011971 178 HNVLAVGLGNCVYLWN-ACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDA----SRCKRVRTMEGHRLR 252 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd-~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~----~~~~~~~~~~~h~~~ 252 (474)
..++.++.|.+++||- ...++.-..+......+++++.+.++...|++|-.+|++.-+.+ ++...++....|..+
T Consensus 37 ~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~ 116 (404)
T KOG1409|consen 37 EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQAR 116 (404)
T ss_pred CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcc
Confidence 6789999999999995 45666655554445788999999999999999999999988865 344556666778888
Q ss_pred EEEEEec--CCEEEEEeCCCcEEEEE---------------------------------------CcC-CcceEeeecCc
Q 011971 253 VGALAWS--SSLLSSGSRDKSILQRD---------------------------------------IRA-QEDFVSKLSGH 290 (474)
Q Consensus 253 V~~l~~~--~~~l~sgs~dg~I~iwd---------------------------------------~~~-~~~~~~~~~~h 290 (474)
|..+-|+ +..+++.+.|..+.-.- +.. .-.++.++.+|
T Consensus 117 v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h 196 (404)
T KOG1409|consen 117 VSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGH 196 (404)
T ss_pred eeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCc
Confidence 8888886 45666666554432111 100 01245677899
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-ceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc
Q 011971 291 KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ-PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (474)
Q Consensus 291 ~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~-~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~ 369 (474)
...+.+++|.+....|.+|..|..+.+||+-..+ ....+.+|...|..+...+.-..+++++ .||.|.+||++...
T Consensus 197 ~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~---edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 197 TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG---EDGGIVVWNMNVKR 273 (404)
T ss_pred ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc---CCCeEEEEecccee
Confidence 9999999999999999999999999999986543 3456778999999999988877677765 69999999987543
Q ss_pred eeee-e----------------------------------cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC-----
Q 011971 370 HLSC-M----------------------------------DTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP----- 409 (474)
Q Consensus 370 ~~~~-~----------------------------------~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~----- 409 (474)
.... . +.+..++..+-+....+... | ..-.+++-|.-
T Consensus 274 ~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~m--g-~e~~vR~~~~c~~~i~ 350 (404)
T KOG1409|consen 274 VETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTM--G-FEFSVRVCDSCYPTIK 350 (404)
T ss_pred ecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccc--c-ceeEEEEecccchhhh
Confidence 2100 0 01222333333332222222 2 22334444321
Q ss_pred --CCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 410 --TMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 410 --~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
+..+++.+..-...|+++.+..+-.+|+|+|.|..|+|||+..
T Consensus 351 ~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 351 DEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 1133444433334589999988888999999999999999865
No 240
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1.3e-11 Score=116.01 Aligned_cols=234 Identities=18% Similarity=0.213 Sum_probs=168.1
Q ss_pred cceeeeeCCC-CcEEEEEc-CCeEEEEeCC------CCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCC
Q 011971 168 FYLNLVDWSS-HNVLAVGL-GNCVYLWNAC------SSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR 239 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~~~-d~~V~lwd~~------~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~ 239 (474)
-.+|.+.|+. +.+|+.|. |..+.||++. +.+.+.+....|...|.|++|.-...+|++|..+|+|.+.|+++
T Consensus 57 GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt 136 (609)
T KOG4227|consen 57 GCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIET 136 (609)
T ss_pred cccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeeccc
Confidence 4689999997 77777776 5699999975 33555555556778999999999999999999999999999999
Q ss_pred CeEEEEec--CCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEee--ecCcCCCEEEEEEecC-CCEEEEEeCC
Q 011971 240 CKRVRTME--GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSK--LSGHKSEVCGLKWSYD-NRELASGGND 312 (474)
Q Consensus 240 ~~~~~~~~--~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~--~~~h~~~V~~l~~spd-~~~lasg~~D 312 (474)
.+.+..+. ...+.|..+..+| +.|++.+.++.|.+||++........ +.........+.|+|. -.+|++.+..
T Consensus 137 ~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~ 216 (609)
T KOG4227|consen 137 KQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSET 216 (609)
T ss_pred ceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEecccc
Confidence 98887765 2345899998885 89999999999999999876632222 2233455677888885 4567778888
Q ss_pred CcEEEEECCCCc--------------------------------------------------ceEEEccCC-------Cc
Q 011971 313 NRLFVWNQHSTQ--------------------------------------------------PVLKYCEHT-------AA 335 (474)
Q Consensus 313 g~v~iwd~~~~~--------------------------------------------------~~~~~~~h~-------~~ 335 (474)
+-+-+||.+..+ ++.++ .|. ..
T Consensus 217 ~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~T 295 (609)
T KOG4227|consen 217 GGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIKT 295 (609)
T ss_pred CCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec-cCCCCcceeeee
Confidence 888889875321 00111 111 23
Q ss_pred EEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-----------------------eeeeec-CCCCeEEEEEcCCCCe
Q 011971 336 VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-----------------------HLSCMD-TGSQVCNLVWSKNVNE 391 (474)
Q Consensus 336 V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~-----------------------~~~~~~-~~~~v~~l~~s~~~~~ 391 (474)
+++++|..+ +-+++|+ .+-.|++|.+.... .+..+. |.+-+..+.|++....
T Consensus 296 ~KS~~F~~D--~~v~tGS--D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~ 371 (609)
T KOG4227|consen 296 IKSMTFIDD--YTVATGS--DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNL 371 (609)
T ss_pred eeeeeeecc--eeeeccC--cccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcce
Confidence 556666654 3366654 78889999875311 111222 4566788999999888
Q ss_pred EEEEEecCCCeEEEEEC
Q 011971 392 LVSTHGYSQNQIIVWRY 408 (474)
Q Consensus 392 l~~~~g~~dg~I~iwd~ 408 (474)
|++ .+-.+.++||.-
T Consensus 372 l~S--SGVE~~~KlWS~ 386 (609)
T KOG4227|consen 372 LVS--SGVENSFKLWSD 386 (609)
T ss_pred Eec--cchhhheecccc
Confidence 887 557899999964
No 241
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.46 E-value=1e-12 Score=132.26 Aligned_cols=285 Identities=18% Similarity=0.273 Sum_probs=205.5
Q ss_pred CcceeeeeCCC-CcEEEEEcCCeEEEEeCCCC-CEEEEEecCCCCCEEEEEEcCCC--CEEEEEeCCCcEEEecCCC---
Q 011971 167 DFYLNLVDWSS-HNVLAVGLGNCVYLWNACSS-KVTKLCDLGIDDSVCSVGWANRN--THLAVGTSHGKVQIWDASR--- 239 (474)
Q Consensus 167 d~~v~~l~~s~-~~~la~~~d~~V~lwd~~~~-~~~~~~~~~~~~~V~~v~~sp~g--~~la~gs~dg~I~iwd~~~--- 239 (474)
+..++.+..+| +.-++.+..-.+++-|+... .....+..-..-.|-.+.|++.. .+-++......-.||++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~ 103 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS 103 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCc
Confidence 34466666666 44445555555667776543 22222211123467788898754 4666666667778999863
Q ss_pred CeEEEEecCCCCcEEEEEec---CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEE
Q 011971 240 CKRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (474)
Q Consensus 240 ~~~~~~~~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~ 316 (474)
......+.+|...|+.+.|+ +..+++++.|-.+..||++....++.....-......++|+.....+.+.+..+.|.
T Consensus 104 ~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~ 183 (1081)
T KOG0309|consen 104 NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIF 183 (1081)
T ss_pred cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceE
Confidence 34455677999999999998 579999999999999999998877777776667788899998555566667778899
Q ss_pred EEECCCC-cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC--ceeeeecCCCCeEEEEEcCCCCeEE
Q 011971 317 VWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN--THLSCMDTGSQVCNLVWSKNVNELV 393 (474)
Q Consensus 317 iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~--~~~~~~~~~~~v~~l~~s~~~~~l~ 393 (474)
+||++.+ .++..+++|...|+.++|...-...+.+.+ .|++|++||.... +....+.+...|..-.+-|-|.-.+
T Consensus 184 vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~--~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 184 VWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS--NDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred EEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC--CCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence 9999875 678889999999999999876666666665 8999999998654 3445666778888888888666544
Q ss_pred EEEecCCCeEEEEECC----------CCceeEEEcCCCccEEEEEECCCC----------CEEEEEeCCCcEEEEeCCCC
Q 011971 394 STHGYSQNQIIVWRYP----------TMSKLATLTGHTFRVLYLAISPDG----------QTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 394 ~~~g~~dg~I~iwd~~----------~~~~~~~l~~h~~~V~~l~~spdg----------~~l~t~s~Dg~I~iW~l~~~ 453 (474)
+.-.-.++.+.+++.+ ..+++..|.||+..|....|-..+ -.|+|-+.|.++++|.+...
T Consensus 262 ~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 262 IMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred eccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 4222233344444432 246789999999999877775322 27999999999999998763
No 242
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.45 E-value=3.5e-12 Score=124.48 Aligned_cols=189 Identities=15% Similarity=0.215 Sum_probs=134.9
Q ss_pred cEEEEEcCCeEEEEeCCCCCEEEEEec---CCCCCEEEEEEcCCC-CEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEE
Q 011971 179 NVLAVGLGNCVYLWNACSSKVTKLCDL---GIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVG 254 (474)
Q Consensus 179 ~~la~~~d~~V~lwd~~~~~~~~~~~~---~~~~~V~~v~~sp~g-~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~ 254 (474)
.+|.+=..|.|++.|....++.+++.. -....|+|+.|-|.+ ..++++-.+|.+.+||.+ +....+
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~----------~~~~~t 256 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE----------IVCGAT 256 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc----------ccccCC
Confidence 445555568888888776555444322 124789999999955 466667789999999862 111122
Q ss_pred EEEec----CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEc
Q 011971 255 ALAWS----SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC 330 (474)
Q Consensus 255 ~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~ 330 (474)
...|. ++.+.... |.-.....++..+.--.+.|..++|+|||++||+.+.||.++|||..+.+.+-.++
T Consensus 257 ~p~~~~~k~~~~f~i~t-------~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk 329 (636)
T KOG2394|consen 257 APSYQALKDGDQFAILT-------SKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK 329 (636)
T ss_pred CCcccccCCCCeeEEee-------eeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH
Confidence 22221 33333222 21111112444454455689999999999999999999999999999988887777
Q ss_pred cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeEEEEEcC
Q 011971 331 EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM-DTGSQVCNLVWSK 387 (474)
Q Consensus 331 ~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~ 387 (474)
..-+...|++|+|||+ ++++|| +|.-|.||.+...+.+..- .|.+.|..++|.|
T Consensus 330 SYFGGLLCvcWSPDGK-yIvtGG--EDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 330 SYFGGLLCVCWSPDGK-YIVTGG--EDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred hhccceEEEEEcCCcc-EEEecC--CcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 7788999999999998 666776 9999999999988877654 4778899999883
No 243
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.43 E-value=1.1e-10 Score=107.93 Aligned_cols=268 Identities=16% Similarity=0.222 Sum_probs=178.9
Q ss_pred eeeeeCCC--CcEEEEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEE-EEEeCCCcEEEecCCCCeEEEE
Q 011971 170 LNLVDWSS--HNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHL-AVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 170 v~~l~~s~--~~~la~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~l-a~gs~dg~I~iwd~~~~~~~~~ 245 (474)
+..+.|.. ..+|.+. .++.|.+|++...+....++ .....+.+++|||||+.| .+...+-.|.||.+.+.+....
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~ 129 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL 129 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecceeEEEec-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe
Confidence 45567876 2344444 47799999999888877775 346789999999999655 4555688999999987665433
Q ss_pred ecCCCCcEEEEEecC--CEEEEEeC------------------------------------CCcEEEEECcCCcceEeee
Q 011971 246 MEGHRLRVGALAWSS--SLLSSGSR------------------------------------DKSILQRDIRAQEDFVSKL 287 (474)
Q Consensus 246 ~~~h~~~V~~l~~~~--~~l~sgs~------------------------------------dg~I~iwd~~~~~~~~~~~ 287 (474)
.-....+..++|++ .+.+..++ +..+.+||---.-. +..+
T Consensus 130 -~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk-v~aY 207 (447)
T KOG4497|consen 130 -PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK-VYAY 207 (447)
T ss_pred -cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe-eeee
Confidence 22233446666653 33333222 22344555322211 1111
Q ss_pred cCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-------------------------------------------
Q 011971 288 SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ------------------------------------------- 324 (474)
Q Consensus 288 ~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~------------------------------------------- 324 (474)
.-.-.+..++|+|.+++|++|+.|+.++|.+--+-+
T Consensus 208 -e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 208 -ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred -eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 122468899999999999999999999886521100
Q ss_pred -----------------ceEEEc------cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeE
Q 011971 325 -----------------PVLKYC------EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVC 381 (474)
Q Consensus 325 -----------------~~~~~~------~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~ 381 (474)
.++.++ ...-.+.-++|++|.. ++++-....-..+-+||++..+....+....+|.
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~-y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~pir 365 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDST-YAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIR 365 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCce-EEeeecCCCCceEEEEechhhhhhhhhhhcccee
Confidence 001111 1223466789999965 5665432334669999999988877777889999
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcE
Q 011971 382 NLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETL 445 (474)
Q Consensus 382 ~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I 445 (474)
...|.|....|++.+ ....+++|...-...+. ..+....|..+.|.-+|..|+-.+.|-.-
T Consensus 366 af~WdP~~prL~vct--g~srLY~W~psg~~~V~-vP~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 366 AFEWDPGRPRLVVCT--GKSRLYFWAPSGPRVVG-VPKKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred EEEeCCCCceEEEEc--CCceEEEEcCCCceEEe-cCCCCceeeeEEecCCCcEEEEEcCCceE
Confidence 999999999998854 45568999865433333 33444679999999999999999998643
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.42 E-value=1.6e-10 Score=117.76 Aligned_cols=217 Identities=16% Similarity=0.158 Sum_probs=145.8
Q ss_pred cEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCC---CcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCE
Q 011971 231 KVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRD---KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305 (474)
Q Consensus 231 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 305 (474)
.|.++|.... ..+.+..+...+...+|++ +.|+.+..+ ..|++||+.++. ...+..+...+.++.|+||++.
T Consensus 171 ~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~--~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 171 ELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ--REKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred eEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC--EEEeecCCCCccceEECCCCCE
Confidence 5888887543 3455556777788899984 667666543 479999998765 2333445566778899999997
Q ss_pred EEEE-eCCC--cEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEE
Q 011971 306 LASG-GNDN--RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCN 382 (474)
Q Consensus 306 lasg-~~Dg--~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~ 382 (474)
|+.. +.++ .|++||+.+++. ..+..+........|+|++..++++........|.++|+.+++..........+..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~ 326 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNAS 326 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccC
Confidence 7654 4343 599999987653 44445555566789999999887765311223688889888775544445566778
Q ss_pred EEEcCCCCeEEEEEecC-CCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCC---cEEEEeCCCC
Q 011971 383 LVWSKNVNELVSTHGYS-QNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDE---TLRFWNVFPS 453 (474)
Q Consensus 383 l~~s~~~~~l~~~~g~~-dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg---~I~iW~l~~~ 453 (474)
..|+|+++.++.+.... ...|.+||+.++.. ..+... .......|+|||++|+.++.++ .+++.+....
T Consensus 327 ~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 327 PSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 89999999998853211 12788999887543 233322 2345568999999888877654 3555555443
No 245
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=2.6e-10 Score=116.07 Aligned_cols=242 Identities=12% Similarity=0.058 Sum_probs=153.0
Q ss_pred eEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEE---EEeCCC--cEEEecCCCCeEEEEecCCCCcEEEEEecC--
Q 011971 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLA---VGTSHG--KVQIWDASRCKRVRTMEGHRLRVGALAWSS-- 260 (474)
Q Consensus 188 ~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la---~gs~dg--~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~-- 260 (474)
.|++.|...+....+.. ....+.+-.|+|||+.++ +...+| .|.+.++.+++.... ....+.....+|++
T Consensus 166 ~l~~~d~dG~~~~~lt~--~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG 242 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQ--EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRK 242 (428)
T ss_pred eEEEEcCCCCCceEccc--CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCC
Confidence 78888988777666542 345667889999997532 444444 577778877654332 22344455678884
Q ss_pred CEEEEEe-CCC----cEEEEECcCC--cceEeeecCcCCCEEEEEEecCCCEEEEEe-CCCc--EEEEECCC-CcceEEE
Q 011971 261 SLLSSGS-RDK----SILQRDIRAQ--EDFVSKLSGHKSEVCGLKWSYDNRELASGG-NDNR--LFVWNQHS-TQPVLKY 329 (474)
Q Consensus 261 ~~l~sgs-~dg----~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~spd~~~lasg~-~Dg~--v~iwd~~~-~~~~~~~ 329 (474)
+.|+..+ .+| .+.+|++..+ .........+.......+|+|||+.|+..+ .+|. |+++++.. +.....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 4555443 233 3344666542 122222222333446789999999888765 4564 55555542 2334455
Q ss_pred ccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEe-cCCCeEEEEEC
Q 011971 330 CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHG-YSQNQIIVWRY 408 (474)
Q Consensus 330 ~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g-~~dg~I~iwd~ 408 (474)
..+...+....|+|+|+.|+.+........|.+||+.+++..........+....|+|+|+.|+.+.. .....|.++++
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISL 402 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence 55556778899999999888775411235799999998877554444456778999999999886532 23467888998
Q ss_pred CCCceeEEEcCCCccEEEEEECCCC
Q 011971 409 PTMSKLATLTGHTFRVLYLAISPDG 433 (474)
Q Consensus 409 ~~~~~~~~l~~h~~~V~~l~~spdg 433 (474)
..++.... ....+.+...+|+|-.
T Consensus 403 ~~g~~~~L-t~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 403 ITKKTRKI-VIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCEEEe-ecCCCcccCceecCCC
Confidence 87665433 3344556778888753
No 246
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.41 E-value=3.3e-09 Score=103.42 Aligned_cols=261 Identities=12% Similarity=0.082 Sum_probs=165.4
Q ss_pred CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEecCCCCeEEEEecCCCC-c---
Q 011971 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS----------HGKVQIWDASRCKRVRTMEGHRL-R--- 252 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~----------dg~I~iwd~~~~~~~~~~~~h~~-~--- 252 (474)
+.|++.|..+++++..+..+.... .+ ++|||+.|+++.. +..|.+||..+.+.+..+..... +
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 799999999999999887654333 24 9999998888766 67899999999999988874222 1
Q ss_pred ---EEEEEec--CCEEEEEe-C-CCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC-Cc
Q 011971 253 ---VGALAWS--SSLLSSGS-R-DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS-TQ 324 (474)
Q Consensus 253 ---V~~l~~~--~~~l~sgs-~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~-~~ 324 (474)
...++++ ++.|+... . +..|.+.|+.+.+ .+..+.- .....-...+.+. .+ +-+.||......+.. ++
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k-vv~ei~v-p~~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA-FVRMMDV-PDCYHIFPTANDT-FF-MHCRDGSLAKVGYGTKGN 179 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc-EEEEEeC-CCCcEEEEecCCc-cE-EEeecCceEEEEecCCCc
Confidence 2234444 56777665 3 6889999998877 3443332 1111111121121 11 223344444333322 11
Q ss_pred ce-E---EEccCCCcE-EEEEECC-CCCcEEEEecCCCCCeEEEEECCCC-----ceeeeecC--------CCCeEEEEE
Q 011971 325 PV-L---KYCEHTAAV-KAIAWSP-HLHGLLASGGGTADRCIRFWNTTTN-----THLSCMDT--------GSQVCNLVW 385 (474)
Q Consensus 325 ~~-~---~~~~h~~~V-~~l~~sp-~~~~ll~sg~Gt~d~~I~iwd~~~~-----~~~~~~~~--------~~~v~~l~~ 385 (474)
.. . .+.....++ ..-.|.+ ++..++++. .|.|.+.|+... +.+..+.. .....-+++
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~----eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY----TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY 255 (352)
T ss_pred eEEeeeeeecCCccccccCCceEcCCCcEEEEec----CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence 10 0 111100000 0003455 777777763 599999996443 22222221 122344999
Q ss_pred cCCCCeEEEE-Ee-------cCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCC-EEEEEe-CCCcEEEEeCCCCCC
Q 011971 386 SKNVNELVST-HG-------YSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQ-TIVTGA-GDETLRFWNVFPSPK 455 (474)
Q Consensus 386 s~~~~~l~~~-~g-------~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~t~s-~Dg~I~iW~l~~~~~ 455 (474)
+++++.++++ ++ ...+.|.++|..+++.+..+.. ...+..++++|||+ +|++.. .++.|.+.|+.+...
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 9999999983 32 2236899999999999998874 34789999999999 888666 578899999988876
Q ss_pred CCCC
Q 011971 456 SQNT 459 (474)
Q Consensus 456 ~~~~ 459 (474)
....
T Consensus 335 i~~i 338 (352)
T TIGR02658 335 LSSV 338 (352)
T ss_pred Eeee
Confidence 6554
No 247
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.40 E-value=1.2e-10 Score=113.37 Aligned_cols=279 Identities=13% Similarity=0.088 Sum_probs=191.4
Q ss_pred CcceeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC---------------
Q 011971 167 DFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG--------------- 230 (474)
Q Consensus 167 d~~v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg--------------- 230 (474)
++.++.+.||| +.+|+......|.+|.-........+ .| ..|..+.|+|.++||.+-+..+
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~--~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRF--RH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred CcchhheeecCcchheehhhccceEEccccchhheeee--ec-CCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 46688899999 88888888889999998877744333 33 5799999999999999865433
Q ss_pred cEEEecCCCCeEEEEecCCCCc--EE-EEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCc-CCCEEEEEEecCCC
Q 011971 231 KVQIWDASRCKRVRTMEGHRLR--VG-ALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGH-KSEVCGLKWSYDNR 304 (474)
Q Consensus 231 ~I~iwd~~~~~~~~~~~~h~~~--V~-~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~spd~~ 304 (474)
.+.|||+.++..+..+.....+ .+ -+.|+ ..+++-. ....++++++ +..-....+..- ...|....|+|.++
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n 186 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGN 186 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCC
Confidence 4999999999999999876665 44 45665 3333322 4567899997 332111111111 35688889998643
Q ss_pred --EEEE-----EeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecC------C--CCCeEEEEECCCCc
Q 011971 305 --ELAS-----GGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGG------T--ADRCIRFWNTTTNT 369 (474)
Q Consensus 305 --~las-----g~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~G------t--~d~~I~iwd~~~~~ 369 (474)
.||. ++.+++++||.+..+..+.+-.-....-..+.|.+.|.++++-.-. + ....+.++++....
T Consensus 187 ~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~ 266 (561)
T COG5354 187 HDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS 266 (561)
T ss_pred CceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc
Confidence 3443 4667899999998666554433333334578899999887664310 0 13568888888555
Q ss_pred eeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCC---CcEE
Q 011971 370 HLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGD---ETLR 446 (474)
Q Consensus 370 ~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~D---g~I~ 446 (474)
+.......+.|...+|.|.++.+++++|..+-.+.++|++.. ....+ ....=..+.|+|.+++++.++-| |.|-
T Consensus 267 i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~ 343 (561)
T COG5354 267 IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIE 343 (561)
T ss_pred cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCccccceE
Confidence 555556788999999999999999999999999999999765 22222 22233445677777776665544 4566
Q ss_pred EEeCCCC
Q 011971 447 FWNVFPS 453 (474)
Q Consensus 447 iW~l~~~ 453 (474)
+|+....
T Consensus 344 i~~~~~r 350 (561)
T COG5354 344 IFDPAGR 350 (561)
T ss_pred EeccCCc
Confidence 6665543
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=3.8e-10 Score=115.53 Aligned_cols=218 Identities=16% Similarity=0.139 Sum_probs=145.2
Q ss_pred cEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCC---CcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCE
Q 011971 231 KVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRD---KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305 (474)
Q Consensus 231 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 305 (474)
.|.++|.+... .+.+..+...+....|++ +.|+..+.+ ..|.+||+.++. ...+....+.+....|+|||+.
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~--~~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR--REQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC--EEEccCCCCCcCCeEECCCCCE
Confidence 47788877544 445556777889999984 566655433 368999998765 2333333444567899999998
Q ss_pred EEE-EeCCC--cEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEE
Q 011971 306 LAS-GGNDN--RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCN 382 (474)
Q Consensus 306 las-g~~Dg--~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~ 382 (474)
|+. ...+| .|++||+.+++. ..+..+........|+|+++.++.+........|.++|+.+++.............
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccc
Confidence 874 44444 688999987764 44555666677789999999887775411234688889888775433323334456
Q ss_pred EEEcCCCCeEEEEEecCCC--eEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCC---CcEEEEeCCCCCC
Q 011971 383 LVWSKNVNELVSTHGYSQN--QIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGD---ETLRFWNVFPSPK 455 (474)
Q Consensus 383 l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~D---g~I~iW~l~~~~~ 455 (474)
..|+|+|+.++.+.. .++ .|.+||+.+++.. .+.. ........|+|||++|+..+.+ ..|+++++.....
T Consensus 336 ~~~Spdg~~i~~~~~-~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHR-QDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred eEECCCCCEEEEEEc-cCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 789999999988642 233 6888998877543 3322 2223356899999998876643 3477777765443
No 249
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.39 E-value=9.3e-11 Score=106.89 Aligned_cols=264 Identities=17% Similarity=0.191 Sum_probs=182.5
Q ss_pred CeEEEEeCCCCCEEEEEec--CCCCCEEEEEEcC---CCC-EEEEEeCCCcEEEecCCCCeEEEEecCC---CC---cEE
Q 011971 187 NCVYLWNACSSKVTKLCDL--GIDDSVCSVGWAN---RNT-HLAVGTSHGKVQIWDASRCKRVRTMEGH---RL---RVG 254 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~--~~~~~V~~v~~sp---~g~-~la~gs~dg~I~iwd~~~~~~~~~~~~h---~~---~V~ 254 (474)
|.+++|++...+...+..+ .....+..+.|.. +|. .|+.+...|.|++|..........+++- .- ...
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~l 125 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEAL 125 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeee
Confidence 5788999887766552222 3356788888874 455 5667777899999987655444444432 11 234
Q ss_pred EEEec--CCEEEEEeCCCcEEEEECcCCc-ceEeeecCcCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCC-CcceEE-
Q 011971 255 ALAWS--SSLLSSGSRDKSILQRDIRAQE-DFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHS-TQPVLK- 328 (474)
Q Consensus 255 ~l~~~--~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~sp-d~~~lasg~~Dg~v~iwd~~~-~~~~~~- 328 (474)
++.|+ +..++++..+|.+.+-+..... +.++..+.|.-+++..+|+. +.+.+.+|+.|+.+..||++. ++.+..
T Consensus 126 slD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n 205 (339)
T KOG0280|consen 126 SLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN 205 (339)
T ss_pred EEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec
Confidence 56665 5779999999999855543322 23457889999999999986 446889999999999999993 333333
Q ss_pred EccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECC-CCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011971 329 YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT-TNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR 407 (474)
Q Consensus 329 ~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~-~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 407 (474)
.+.|...|.+|.-+|.....+++|+ .|.+|++||++ .++++..-..++.|+.+.++|.-...+.+ .+.-+-.+|.+
T Consensus 206 ~kvH~~GV~SI~ss~~~~~~I~TGs--YDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~-~CMh~G~ki~~ 282 (339)
T KOG0280|consen 206 SKVHTSGVVSIYSSPPKPTYIATGS--YDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLA-ACMHNGAKILD 282 (339)
T ss_pred ceeeecceEEEecCCCCCceEEEec--cccceeeeehhcccCccccCccccceEEEEecchhhhHHHH-HHHhcCceEEE
Confidence 4468899999999999888999987 99999999999 57888888888999999999965532221 22344455665
Q ss_pred CCCC--c---eeEEEcCCCccEEEEEECCCCCEEEEEe-CCCcEE-EEeCCCC
Q 011971 408 YPTM--S---KLATLTGHTFRVLYLAISPDGQTIVTGA-GDETLR-FWNVFPS 453 (474)
Q Consensus 408 ~~~~--~---~~~~l~~h~~~V~~l~~spdg~~l~t~s-~Dg~I~-iW~l~~~ 453 (474)
.... + .....+.|.+-+..-.|......|+|++ .|..|+ +|-.-++
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 5432 2 2334456766566666644345688865 466655 7765444
No 250
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.39 E-value=1e-10 Score=115.92 Aligned_cols=182 Identities=15% Similarity=0.242 Sum_probs=151.7
Q ss_pred EEEEcCCeEEEEeCCCCCEEEEEec--CCCCCEEEEEEc--------------------CCCCEEEEEeCCCcEEEecCC
Q 011971 181 LAVGLGNCVYLWNACSSKVTKLCDL--GIDDSVCSVGWA--------------------NRNTHLAVGTSHGKVQIWDAS 238 (474)
Q Consensus 181 la~~~d~~V~lwd~~~~~~~~~~~~--~~~~~V~~v~~s--------------------p~g~~la~gs~dg~I~iwd~~ 238 (474)
.....||.+++|+...+++..-+.. .-.+..++..|. -+...++-|...|.|.+|++.
T Consensus 9 A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~ 88 (541)
T KOG4547|consen 9 ALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVA 88 (541)
T ss_pred eecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEec
Confidence 3334689999999999887665532 225566666663 133578889999999999999
Q ss_pred CCeEEEEec--CCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCc
Q 011971 239 RCKRVRTME--GHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNR 314 (474)
Q Consensus 239 ~~~~~~~~~--~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~ 314 (474)
.++....+. +|.+.|.++.|+. ..|.+++.|+.+..|+..... .+.........+.+++.+||+..|++++ ++
T Consensus 89 ~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ 165 (541)
T KOG4547|consen 89 GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-IIRIWKEQKPLVSSLCISPDGKILLTAS--RQ 165 (541)
T ss_pred CCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-eeeeeccCCCccceEEEcCCCCEEEecc--ce
Confidence 999988886 6999999999985 689999999999999998776 5777788888899999999999999987 58
Q ss_pred EEEEECCCCcceEEEccCCCcEEEEEECCC-----CCcEEEEecCCCCCeEEEEECCC
Q 011971 315 LFVWNQHSTQPVLKYCEHTAAVKAIAWSPH-----LHGLLASGGGTADRCIRFWNTTT 367 (474)
Q Consensus 315 v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~-----~~~ll~sg~Gt~d~~I~iwd~~~ 367 (474)
|++||+++++.+..|.+|.++|.++.|... |.++|.+.. .+..|.+|-+..
T Consensus 166 ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~--~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 166 IKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA--AERGITVWVVEK 221 (541)
T ss_pred EEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc--cccceeEEEEEc
Confidence 999999999999999999999999999877 777888765 567788886654
No 251
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=5.1e-11 Score=117.25 Aligned_cols=185 Identities=15% Similarity=0.305 Sum_probs=148.6
Q ss_pred EEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEee------ecCcCC--
Q 011971 223 LAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSK------LSGHKS-- 292 (474)
Q Consensus 223 la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~------~~~h~~-- 292 (474)
|++++....|+-++++.|+.+..+....+.++++..++ .+|++|+.+|.|-.||.+.... +.. ...|.+
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr-v~~l~~~~~v~s~pg~~ 226 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR-VGTLDAASSVNSHPGGD 226 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh-heeeecccccCCCcccc
Confidence 34444455788889999999999988889999999985 7889999999999999998663 222 223433
Q ss_pred ---CEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEc-cCCCcEEEEEECCCC-CcEEEEecCCCCCeEEEEECCC
Q 011971 293 ---EVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHL-HGLLASGGGTADRCIRFWNTTT 367 (474)
Q Consensus 293 ---~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~sp~~-~~ll~sg~Gt~d~~I~iwd~~~ 367 (474)
.|++++|+.+|-.+++|..+|.|+|||+++.+++..-. ....+|..+.|.+.+ ..-+++. ....++|||-.+
T Consensus 227 ~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~---Dk~~~kiWd~~~ 303 (703)
T KOG2321|consen 227 AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM---DKRILKIWDECT 303 (703)
T ss_pred ccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec---chHHhhhccccc
Confidence 49999999999999999999999999999998876542 234588999997652 2345544 467899999999
Q ss_pred CceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce
Q 011971 368 NTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK 413 (474)
Q Consensus 368 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~ 413 (474)
|+....+.....+..+++-|++..+++ +.....+..|=++..-+
T Consensus 304 Gk~~asiEpt~~lND~C~~p~sGm~f~--Ane~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 304 GKPMASIEPTSDLNDFCFVPGSGMFFT--ANESSKMHTYYIPSLGP 347 (703)
T ss_pred CCceeeccccCCcCceeeecCCceEEE--ecCCCcceeEEccccCC
Confidence 999999999899999999999999998 66788888887776543
No 252
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.36 E-value=2.5e-09 Score=103.40 Aligned_cols=274 Identities=16% Similarity=0.210 Sum_probs=189.5
Q ss_pred CcEEEEEcCCeEEEEeCCCCCEEEEEecC--CC---C------CEEEEE-EcC-CCCEEEEEeCCCcEEEecCCCCeEEE
Q 011971 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLG--ID---D------SVCSVG-WAN-RNTHLAVGTSHGKVQIWDASRCKRVR 244 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~~~~~~~~~~~--~~---~------~V~~v~-~sp-~g~~la~gs~dg~I~iwd~~~~~~~~ 244 (474)
+.-++....|.|++||..+..+.++- ++ .. . ++.-+. |++ +|++++..+. |...|.+...+-.+.
T Consensus 278 GkrIvFq~~GdIylydP~td~lekld-I~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq 355 (668)
T COG4946 278 GKRIVFQNAGDIYLYDPETDSLEKLD-IGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQ 355 (668)
T ss_pred CcEEEEecCCcEEEeCCCcCcceeee-cCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEE
Confidence 66778888999999999988776653 32 01 0 111111 333 6888888874 778888776665543
Q ss_pred EecCCCCcEEEEEec--CCEEEEEeCCC-cEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011971 245 TMEGHRLRVGALAWS--SSLLSSGSRDK-SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (474)
Q Consensus 245 ~~~~h~~~V~~l~~~--~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~ 321 (474)
. +|..+|.-..+. ++-++.|..|| .+-++|.++.+ +..+...-+.|.+++.+++|+.++++.....|.+.|+.
T Consensus 356 v--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 356 V--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred c--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 3 466667666664 67899999999 89999998876 56677778899999999999999999999999999999
Q ss_pred CCcceEEEccCCCcEEEEEECCCCCcEEEEec-CCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEE-----
Q 011971 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGG-GTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVST----- 395 (474)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~-Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~----- 395 (474)
++.....-+...+-|..++|+|+++++..+-- |.....|+++|+.+++........+.-.+-+|.|++++|...
T Consensus 432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~RsL 511 (668)
T COG4946 432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARSL 511 (668)
T ss_pred CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEecccc
Confidence 99876665667788999999999886554421 223456999999988766544433333444445555444321
Q ss_pred --------------------------------------------------------------------EecCCCeEEEEE
Q 011971 396 --------------------------------------------------------------------HGYSQNQIIVWR 407 (474)
Q Consensus 396 --------------------------------------------------------------------~g~~dg~I~iwd 407 (474)
.+-.+|.|.++.
T Consensus 512 dPs~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs 591 (668)
T COG4946 512 DPSNDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFS 591 (668)
T ss_pred CCCCCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCccceeEeeecCCCeEEEEE
Confidence 133445555555
Q ss_pred CCC-C--------ce----eE--EEc-----CCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 011971 408 YPT-M--------SK----LA--TLT-----GHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQN 458 (474)
Q Consensus 408 ~~~-~--------~~----~~--~l~-----~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~ 458 (474)
++- + ++ +. .++ .-...+.++..|+||..|+. -.||.|+++++..++..+.
T Consensus 592 ~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~k~nvss~rlS~D~s~ilv-k~d~kl~~f~vekkPd~ek 661 (668)
T COG4946 592 YPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEYKDNVSSFRLSSDGSKILV-KLDGKLRLFDVEKKPDFEK 661 (668)
T ss_pred eeccchhhhhhcCCCccceEEEEecchhhHHHHhcccceEEEcCCCCEEEE-EeCCeEEEEecccCcchhh
Confidence 431 0 00 11 111 12345789999999999988 7899999999998766553
No 253
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=8.3e-10 Score=108.47 Aligned_cols=279 Identities=15% Similarity=0.262 Sum_probs=182.5
Q ss_pred ceeeeeCCC-CcEEEE-Ec-----------CCeEEEEeCCCCCEEEEEec--CCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 011971 169 YLNLVDWSS-HNVLAV-GL-----------GNCVYLWNACSSKVTKLCDL--GIDDSVCSVGWANRNTHLAVGTSHGKVQ 233 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~-~~-----------d~~V~lwd~~~~~~~~~~~~--~~~~~V~~v~~sp~g~~la~gs~dg~I~ 233 (474)
++..+++|| .++|+. +. +..+.|||+.+|...+.+.. +....-.-+.||.|++++|.-..+ .|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEE
Confidence 477888888 444433 21 24899999999998887765 222222346899999999988765 699
Q ss_pred EecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCC-----CcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEE
Q 011971 234 IWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRD-----KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL 306 (474)
Q Consensus 234 iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 306 (474)
||+..+..++..-.-.-..|....|+| ++|+--... ..+.+-.+.+.. .+....-|.-.=|.|.|-.+|.+|
T Consensus 330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~-~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKR-EIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccc-eeeeccceeeeccEEEeccCCcEE
Confidence 999877554433333456788888986 333332211 123344444333 233334444445778888899888
Q ss_pred EEEe----------CCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCC-Cc---eee
Q 011971 307 ASGG----------NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-NT---HLS 372 (474)
Q Consensus 307 asg~----------~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~-~~---~~~ 372 (474)
+.-- .-..+.|+.++..........-...|...+|-|.|..+.+..+.+...++.+|-+.+ .. ++.
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk 488 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK 488 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence 7532 112356666665543333335567899999999999887777666778899998873 22 233
Q ss_pred eecCCCCeEEEEEcCCCCeEEEEE-ecCCCeEEEEECCC--CceeEEEcCCCccEEEEEECCCCCEEEEEeC------CC
Q 011971 373 CMDTGSQVCNLVWSKNVNELVSTH-GYSQNQIIVWRYPT--MSKLATLTGHTFRVLYLAISPDGQTIVTGAG------DE 443 (474)
Q Consensus 373 ~~~~~~~v~~l~~s~~~~~l~~~~-g~~dg~I~iwd~~~--~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~------Dg 443 (474)
.++. ...+.+.|+|.|++++++. ++..|.+.++|... .+.+.. ..| ...+.+.|.|.|+|++|++. |.
T Consensus 489 ~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~ 565 (698)
T KOG2314|consen 489 ELDK-KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS-PEH-FAATEVEWDPTGRYVVTSSSSWRHKVDN 565 (698)
T ss_pred hhcc-cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC-ccc-cccccceECCCCCEEEEeeehhhhcccc
Confidence 3332 5577899999999988753 34588999999874 222222 123 34677899999999999875 55
Q ss_pred cEEEEeCCC
Q 011971 444 TLRFWNVFP 452 (474)
Q Consensus 444 ~I~iW~l~~ 452 (474)
--++|++..
T Consensus 566 GYri~tfqG 574 (698)
T KOG2314|consen 566 GYRIFTFQG 574 (698)
T ss_pred ceEEEEeec
Confidence 567777654
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=5.5e-10 Score=113.71 Aligned_cols=215 Identities=14% Similarity=0.121 Sum_probs=140.6
Q ss_pred eeeCCCC--c--EEEEEc-C--CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeC-CC----cEEEecCCC
Q 011971 172 LVDWSSH--N--VLAVGL-G--NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-HG----KVQIWDASR 239 (474)
Q Consensus 172 ~l~~s~~--~--~la~~~-d--~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~-dg----~I~iwd~~~ 239 (474)
.-.|+|+ . ++.++. + ..|++.++.+++..++..+ .+.....+|+|||+.|+..+. +| .+.+|++..
T Consensus 189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~--~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~ 266 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL--QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLET 266 (428)
T ss_pred cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC--CCCccceEECCCCCEEEEEECCCCCcceeEEEeeccc
Confidence 4479984 3 333443 2 3799999999987777643 455667899999998887653 23 344577664
Q ss_pred C---eEEEEecCCCCcEEEEEecC--CEEEEEe-CCCcEEEE--ECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC
Q 011971 240 C---KRVRTMEGHRLRVGALAWSS--SLLSSGS-RDKSILQR--DIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN 311 (474)
Q Consensus 240 ~---~~~~~~~~h~~~V~~l~~~~--~~l~sgs-~dg~I~iw--d~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~ 311 (474)
+ +......++.......+|++ ..|+..+ .+|...+| ++.........+..+...+....|+|||+.|+..+.
T Consensus 267 g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~ 346 (428)
T PRK01029 267 GAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSV 346 (428)
T ss_pred CCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEc
Confidence 2 33333333334456678884 5555544 56655555 443222223444445566788999999999987654
Q ss_pred C---CcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCC
Q 011971 312 D---NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKN 388 (474)
Q Consensus 312 D---g~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~ 388 (474)
+ ..|++||+.+++.. .+......+....|+|+|+.|+++........|.++|+.+++..........+...+|+|-
T Consensus 347 ~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 347 IKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred CCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCC
Confidence 3 46999999888654 3433344677899999999888765422356799999988876655555566777888875
Q ss_pred C
Q 011971 389 V 389 (474)
Q Consensus 389 ~ 389 (474)
.
T Consensus 426 ~ 426 (428)
T PRK01029 426 P 426 (428)
T ss_pred C
Confidence 3
No 255
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1.5e-09 Score=111.34 Aligned_cols=217 Identities=16% Similarity=0.123 Sum_probs=139.5
Q ss_pred cEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeC-CC--cEEEEECcCCcceEeeecCcCCCEEEEEEecCCCE
Q 011971 231 KVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSR-DK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305 (474)
Q Consensus 231 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~-dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 305 (474)
.|.++|..... .+.+..+...+.+..|++ +.|+..+. ++ .|.+||+.+++. ..+...........|+|||+.
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCE
Confidence 56677765443 345555677888999985 56665543 33 588889887652 222222333457899999998
Q ss_pred EEE-EeCCCc--EEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEE
Q 011971 306 LAS-GGNDNR--LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCN 382 (474)
Q Consensus 306 las-g~~Dg~--v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~ 382 (474)
|+. .+.++. |+++|+.+++. ..+..+.......+|+|+++.++.+........|.++|+.+++.......+.....
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcC
Confidence 875 455564 88889887754 44555666677899999999887776411234577888887775443223333456
Q ss_pred EEEcCCCCeEEEEEecCCC--eEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCC-C--cEEEEeCCCCC
Q 011971 383 LVWSKNVNELVSTHGYSQN--QIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGD-E--TLRFWNVFPSP 454 (474)
Q Consensus 383 l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~D-g--~I~iW~l~~~~ 454 (474)
..|+|+|+.++.++ ...+ .|.++|+.+++.. .+... .......|+|||+.|+..+.+ | .|+++++....
T Consensus 355 ~~~SpDG~~l~~~~-~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~ 428 (448)
T PRK04792 355 GSITPDGRSMIMVN-RTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRF 428 (448)
T ss_pred eeECCCCCEEEEEE-ecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 78999999998863 3344 5666787776543 33322 122345899999988765543 3 37777775443
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=8.6e-11 Score=123.08 Aligned_cols=260 Identities=18% Similarity=0.221 Sum_probs=182.5
Q ss_pred cEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcC------CCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCc
Q 011971 179 NVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN------RNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLR 252 (474)
Q Consensus 179 ~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp------~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~ 252 (474)
.+|.+|.+-.|.+||+.++..+..+..-+.-.+. .+ .+.+++++..-+.+..=+... +....+..+-..
T Consensus 18 ~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~~~~~v~~~~~~~v~~~~~~~-~~~~~~s~wi~g 92 (967)
T KOG0974|consen 18 DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLLSGKIVTCAKSDEVYVKEASN-QIIERFSDWIFG 92 (967)
T ss_pred ceeeecCCCceEEeeCCchhHhhhhhhhcccccc----cccccceeccceEEEEEeecceeecchhh-hhhhhccccccc
Confidence 5677888889999999988765544321111111 11 133455555444444333221 111222222222
Q ss_pred EEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCC-----CEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceE
Q 011971 253 VGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKS-----EVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL 327 (474)
Q Consensus 253 V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-----~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~ 327 (474)
..+.|....++.++.+..+.+||...... ..... +.. ...-+-++++.-++++|+--+.|.+|+....+...
T Consensus 93 -~~l~~e~k~i~l~~~~ns~~i~d~~~~~~-~~~i~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~ 169 (967)
T KOG0974|consen 93 -AKLFEENKKIALVTSRNSLLIRDSKNSSV-LSKIQ-SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI 169 (967)
T ss_pred -cchhhhcceEEEEEcCceEEEEecccCce-ehhcC-CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc
Confidence 34455578899999999999999887652 22222 222 12223345667789999999999999988544444
Q ss_pred EEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee--eecCCCCeEEEEEcCCCCeEEEEEecCCCeEEE
Q 011971 328 KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS--CMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIV 405 (474)
Q Consensus 328 ~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~--~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~i 405 (474)
.+.+|.+.+.++.|+-+|.+++ +.+ +|+.+++|++.+.+... .+.|...+..++|.++ ++++ ++.|-..++
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~-s~S--dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t--~gedctcrv 242 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIA-SVS--DDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIIT--VGEDCTCRV 242 (967)
T ss_pred eecccCCceEEEEEccCCcEEE-EEe--cCcceeeeecccccccCcccccccceeEEEEeccc--eeEE--eccceEEEE
Confidence 6889999999999999998554 444 89999999999988765 4568889999999999 7777 779999999
Q ss_pred EECCCCceeEEEcCCCc-cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 406 WRYPTMSKLATLTGHTF-RVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 406 wd~~~~~~~~~l~~h~~-~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
|+. .++.+..+.+|.. .|..++..++...++|++.|+.+++|++....
T Consensus 243 W~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 243 WGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred Eec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 965 4455557888865 58999999999999999999999999987643
No 257
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1.9e-10 Score=115.76 Aligned_cols=281 Identities=16% Similarity=0.300 Sum_probs=198.5
Q ss_pred CCCCcceeeeeCCC-CcEEEEE-cCCeEEEEeCCCCCE---------------EEEEecCCCCCEEEEEEcCCCCEEEEE
Q 011971 164 LQDDFYLNLVDWSS-HNVLAVG-LGNCVYLWNACSSKV---------------TKLCDLGIDDSVCSVGWANRNTHLAVG 226 (474)
Q Consensus 164 ~~~d~~v~~l~~s~-~~~la~~-~d~~V~lwd~~~~~~---------------~~~~~~~~~~~V~~v~~sp~g~~la~g 226 (474)
+++..-++|+.|+. .+++|+| .||.+++..+.+... .+.++ ||++.|.-+.|+.+.+.|-+.
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLe-GH~~sV~vvTWNe~~QKLTtS 89 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLE-GHNASVMVVTWNENNQKLTTS 89 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhc-cCcceEEEEEecccccccccc
Confidence 44566799999997 6677766 589899887654321 11222 899999999999999999999
Q ss_pred eCCCcEEEecCCCCeEEEEec--CCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecC
Q 011971 227 TSHGKVQIWDASRCKRVRTME--GHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYD 302 (474)
Q Consensus 227 s~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 302 (474)
..+|.|.||-+-++.....+. .....|.+++|+ +..++..-.||.|.+=.++.....-+.+++ .....+.|++|
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D 167 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSED 167 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeeccc
Confidence 999999999887776544432 345678999998 688999999999988877665422233332 23457789999
Q ss_pred CCEEEEEeCCCcEEEEECCCCc-------ceE----EEccCCCcEEEEEEC--------CCCCcEEEEecCCCCCeEEEE
Q 011971 303 NRELASGGNDNRLFVWNQHSTQ-------PVL----KYCEHTAAVKAIAWS--------PHLHGLLASGGGTADRCIRFW 363 (474)
Q Consensus 303 ~~~lasg~~Dg~v~iwd~~~~~-------~~~----~~~~h~~~V~~l~~s--------p~~~~ll~sg~Gt~d~~I~iw 363 (474)
.+.++.+-..|.+.++|....- +.. .+......|-.+.|. |+.+.+.++- ..|.+.+-
T Consensus 168 ~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy---~nGr~QiM 244 (1189)
T KOG2041|consen 168 LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY---ANGRMQIM 244 (1189)
T ss_pred HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE---cCceehhh
Confidence 9999999899999999976421 111 112223345666664 4555455443 57777776
Q ss_pred ECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecC--------CCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCE
Q 011971 364 NTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYS--------QNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQT 435 (474)
Q Consensus 364 d~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~--------dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~ 435 (474)
.-.+...-..++++-.+....|+++|..|+++ |.. .+.|.+|. +-|+.+.+++.....|+.++|-..|-.
T Consensus 245 R~eND~~Pvv~dtgm~~vgakWnh~G~vLAvc-G~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLr 322 (1189)
T KOG2041|consen 245 RSENDPEPVVVDTGMKIVGAKWNHNGAVLAVC-GNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLR 322 (1189)
T ss_pred hhcCCCCCeEEecccEeecceecCCCcEEEEc-cCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceE
Confidence 55555555666778889999999999999986 332 13555554 567888888888889999999776655
Q ss_pred EEEEeCCCcEEEEeCCCC
Q 011971 436 IVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 436 l~t~s~Dg~I~iW~l~~~ 453 (474)
++.+ .|+.|+|=++.+.
T Consensus 323 iA~A-vdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 323 IAIA-VDSFIYFANIRPE 339 (1189)
T ss_pred EEEE-ecceEEEEeeccc
Confidence 5544 5677777666554
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.32 E-value=1.3e-10 Score=115.25 Aligned_cols=216 Identities=19% Similarity=0.240 Sum_probs=160.8
Q ss_pred CCCCEEEEEeCCCcEEEecCCCCeEEEEecC---CCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCE
Q 011971 218 NRNTHLAVGTSHGKVQIWDASRCKRVRTMEG---HRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEV 294 (474)
Q Consensus 218 p~g~~la~gs~dg~I~iwd~~~~~~~~~~~~---h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 294 (474)
|...++|....||.++|||...++....+.. -.+...+..|. +.....+.+...- ..+
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-----------------L~~~~s~~k~~~~--~~~ 63 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG-----------------LSADYSPMKWLSL--EKA 63 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE-----------------EEeccchHHHHhH--HHH
Confidence 4567999999999999999999887776652 22334444443 2221111111100 000
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEc--cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee
Q 011971 295 CGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC--EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS 372 (474)
Q Consensus 295 ~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~--~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~ 372 (474)
. .-+.|...++-|...|.|.+|++..++....+. .|.+.|.++.|+.+-..+.. ++ .|+.+..|+...+..+.
T Consensus 64 ~--~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS-~~--ad~~v~~~~~~~~~~~~ 138 (541)
T KOG4547|consen 64 K--KASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYS-VG--ADLKVVYILEKEKVIIR 138 (541)
T ss_pred h--hccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEe-cC--CceeEEEEecccceeee
Confidence 1 113455678889999999999999999888876 59999999999988664544 44 69999999999998888
Q ss_pred eecCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCC-----CCEEEE-EeCCCcE
Q 011971 373 CMDTG-SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPD-----GQTIVT-GAGDETL 445 (474)
Q Consensus 373 ~~~~~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd-----g~~l~t-~s~Dg~I 445 (474)
..... ..+.+++.+||+..++++ .++|.+||+.+.+.+..|.||.++|.+++|.-+ |.++++ ...+.-|
T Consensus 139 ~~~~~~~~~~sl~is~D~~~l~~a----s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i 214 (541)
T KOG4547|consen 139 IWKEQKPLVSSLCISPDGKILLTA----SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI 214 (541)
T ss_pred eeccCCCccceEEEcCCCCEEEec----cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence 87754 458999999999999983 489999999999999999999999999999876 666665 4556678
Q ss_pred EEEeCCCCCCCCCCCC
Q 011971 446 RFWNVFPSPKSQNTDS 461 (474)
Q Consensus 446 ~iW~l~~~~~~~~~~~ 461 (474)
.+|-+....+.+....
T Consensus 215 ~~w~v~~~~kkks~~~ 230 (541)
T KOG4547|consen 215 TVWVVEKEDKKKSLSC 230 (541)
T ss_pred eEEEEEcccccchhhe
Confidence 9999988666555433
No 259
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.31 E-value=6e-09 Score=101.66 Aligned_cols=230 Identities=13% Similarity=0.091 Sum_probs=158.0
Q ss_pred cCCeEEEEeCCCCCEEEEEecCCC------CCEEEEEEcCCCCEEEEEe-C-CCcEEEecCCCCeEEEEecCCCCcEEEE
Q 011971 185 LGNCVYLWNACSSKVTKLCDLGID------DSVCSVGWANRNTHLAVGT-S-HGKVQIWDASRCKRVRTMEGHRLRVGAL 256 (474)
Q Consensus 185 ~d~~V~lwd~~~~~~~~~~~~~~~------~~V~~v~~sp~g~~la~gs-~-dg~I~iwd~~~~~~~~~~~~h~~~V~~l 256 (474)
.++.|.+||..+.+.+..+.++.. .....++++|||++|++.. . +..|.|.|+.+++.+..+.-.. ...-+
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy 153 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIF 153 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEE
Confidence 357999999999999988876422 2334789999999999876 3 6899999999999999887422 33333
Q ss_pred EecCCEEEEEeCCCcEEEEECcCCcceE-e---eecCcCCCE-EEEEEec-CCCEEEEEeCCCcEEEEECCCC-----cc
Q 011971 257 AWSSSLLSSGSRDKSILQRDIRAQEDFV-S---KLSGHKSEV-CGLKWSY-DNRELASGGNDNRLFVWNQHST-----QP 325 (474)
Q Consensus 257 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~-~---~~~~h~~~V-~~l~~sp-d~~~lasg~~Dg~v~iwd~~~~-----~~ 325 (474)
..++..+.+-+.||......+....... . .+......+ ..-.|.+ +|+++.+..+ |.|++.|+... +.
T Consensus 154 ~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~ 232 (352)
T TIGR02658 154 PTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPA 232 (352)
T ss_pred EecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecce
Confidence 3444444455666666554443322211 1 111100000 0003455 7877777666 99999996543 22
Q ss_pred eEEEcc-------CCCcEEEEEECCCCCcEEEEecC-------CCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCC-
Q 011971 326 VLKYCE-------HTAAVKAIAWSPHLHGLLASGGG-------TADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVN- 390 (474)
Q Consensus 326 ~~~~~~-------h~~~V~~l~~sp~~~~ll~sg~G-------t~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~- 390 (474)
...+.. ..+.+.-++++++++.+++...+ ...+.|.++|+.+++.+..+..+..+..+++++|++
T Consensus 233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp 312 (352)
T TIGR02658 233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKP 312 (352)
T ss_pred eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCe
Confidence 222211 23344569999999988884311 012589999999999999999999999999999999
Q ss_pred eEEEEEecCCCeEEEEECCCCceeEEE
Q 011971 391 ELVSTHGYSQNQIIVWRYPTMSKLATL 417 (474)
Q Consensus 391 ~l~~~~g~~dg~I~iwd~~~~~~~~~l 417 (474)
.|+++ ...++.|.++|..+++.+..+
T Consensus 313 ~lyvt-n~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 313 LLYAL-STGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEe-CCCCCcEEEEECcCCeEEeee
Confidence 77765 446888999999999999887
No 260
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=5.5e-10 Score=110.03 Aligned_cols=250 Identities=18% Similarity=0.264 Sum_probs=167.7
Q ss_pred eeeCCCCcEEEEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCC--CEEEE-----EeCCCcEEEecCCCCeEE
Q 011971 172 LVDWSSHNVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRN--THLAV-----GTSHGKVQIWDASRCKRV 243 (474)
Q Consensus 172 ~l~~s~~~~la~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g--~~la~-----gs~dg~I~iwd~~~~~~~ 243 (474)
+..|+.+..+++= ..+.|++|+..+.+..... -|...|+.+.++|.+ ..+|+ ++.-+.|+||...-....
T Consensus 130 ~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~k--l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~ 207 (566)
T KOG2315|consen 130 VPQFSIDESLAARLVSNEVQFYDLGSFKTIQHK--LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH 207 (566)
T ss_pred ccccccchhhhhhhhcceEEEEecCCccceeee--eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc
Confidence 5667775544444 5789999999875543332 256789999999874 34554 234557999987622211
Q ss_pred EEe---cCCCCcEEEEEecC---CEEEEEe--CC---------CcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEE
Q 011971 244 RTM---EGHRLRVGALAWSS---SLLSSGS--RD---------KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNREL 306 (474)
Q Consensus 244 ~~~---~~h~~~V~~l~~~~---~~l~sgs--~d---------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~l 306 (474)
..+ .-....=..+.|+. .+|+.++ -| .++++.++.... ....+ .-.++|.++.|+++++.+
T Consensus 208 ~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s-~~V~L-~k~GPVhdv~W~~s~~EF 285 (566)
T KOG2315|consen 208 QPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES-VSVPL-LKEGPVHDVTWSPSGREF 285 (566)
T ss_pred chhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce-EEEec-CCCCCceEEEECCCCCEE
Confidence 111 11223334577872 3444333 23 357777776322 23222 346899999999999877
Q ss_pred EE--EeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEE
Q 011971 307 AS--GGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLV 384 (474)
Q Consensus 307 as--g~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~ 384 (474)
++ |-.-..+.|||++ +.++..+ ..++=+++-|+|+|+.++++|-|...|.|-|||+.+.+++..+... ..+-+.
T Consensus 286 ~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~-~tt~~e 361 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA-NTTVFE 361 (566)
T ss_pred EEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC-CceEEE
Confidence 65 4456789999986 5566665 4567789999999999999999989999999999998887776533 345678
Q ss_pred EcCCCCeEEEEEec----CCCeEEEEECCCCceeEEEcCCCccEEEEEECC
Q 011971 385 WSKNVNELVSTHGY----SQNQIIVWRYPTMSKLATLTGHTFRVLYLAISP 431 (474)
Q Consensus 385 ~s~~~~~l~~~~g~----~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp 431 (474)
|+|||+++++++.. -|+.++||++ +|..+..-.- ......+.|-|
T Consensus 362 W~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f-~sEL~qv~W~P 410 (566)
T KOG2315|consen 362 WSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMF-KSELLQVEWRP 410 (566)
T ss_pred EcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhh-hHhHhheeeee
Confidence 99999999997543 3899999998 4444443221 11466677765
No 261
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=2e-08 Score=94.67 Aligned_cols=265 Identities=12% Similarity=0.128 Sum_probs=180.4
Q ss_pred CCeEEEEeCC--CCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC---CcEEEecCCC--CeEEE--EecCCCCcEEEE
Q 011971 186 GNCVYLWNAC--SSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH---GKVQIWDASR--CKRVR--TMEGHRLRVGAL 256 (474)
Q Consensus 186 d~~V~lwd~~--~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d---g~I~iwd~~~--~~~~~--~~~~h~~~V~~l 256 (474)
+..|++|++. ++++.........+.++-|+|+|++++|.++..+ |.|..|.++. |++.. .......+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 5689999887 3444444334667889999999999999988665 6777777764 44322 222222233666
Q ss_pred Eec--CCEEEEEe-CCCcEEEEECcCCcce--EeeecCcCCC----------EEEEEEecCCCEEEEEeC-CCcEEEEEC
Q 011971 257 AWS--SSLLSSGS-RDKSILQRDIRAQEDF--VSKLSGHKSE----------VCGLKWSYDNRELASGGN-DNRLFVWNQ 320 (474)
Q Consensus 257 ~~~--~~~l~sgs-~dg~I~iwd~~~~~~~--~~~~~~h~~~----------V~~l~~spd~~~lasg~~-Dg~v~iwd~ 320 (474)
+.+ +.+|+++. ..|.|.++-++....+ ......|.+. +....+.|++++|++..- --.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 776 45666665 4578999988764422 1122334444 788899999999998764 236999999
Q ss_pred CCCcceE----EEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ce---eeee-------cCCCCeEEEEE
Q 011971 321 HSTQPVL----KYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-TH---LSCM-------DTGSQVCNLVW 385 (474)
Q Consensus 321 ~~~~~~~----~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~-~~---~~~~-------~~~~~v~~l~~ 385 (474)
..++... .+ ...+....|+|+|+++...+..- -+++|.+|..... .. ++.+ ........+..
T Consensus 175 ~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~E--L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 175 DDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNE--LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred ccCcccccccccc-CCCCCcceEEEcCCCcEEEEEec--cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 8765422 22 34556789999999997777765 7999999998773 22 2222 23456788999
Q ss_pred cCCCCeEEEEEecCCCeEEEEECCCC-ceeEEE---cCCCccEEEEEECCCCCEEEEEeCC-CcEEEEeCCCCC
Q 011971 386 SKNVNELVSTHGYSQNQIIVWRYPTM-SKLATL---TGHTFRVLYLAISPDGQTIVTGAGD-ETLRFWNVFPSP 454 (474)
Q Consensus 386 s~~~~~l~~~~g~~dg~I~iwd~~~~-~~~~~l---~~h~~~V~~l~~spdg~~l~t~s~D-g~I~iW~l~~~~ 454 (474)
+++|++|+++. -....|.+|.+... ..+..+ ..+...-....|+++|++|+++..| ..|.+|.++...
T Consensus 252 s~dGrFLYasN-Rg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 252 SPDGRFLYASN-RGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred CCCCCEEEEec-CCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 99999999963 34458888887643 222222 2334446788999999999988765 469999887654
No 262
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=5e-10 Score=113.80 Aligned_cols=280 Identities=15% Similarity=0.179 Sum_probs=199.3
Q ss_pred eeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCC------------CEEEEEeCCCcEEEecC
Q 011971 170 LNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRN------------THLAVGTSHGKVQIWDA 237 (474)
Q Consensus 170 v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g------------~~la~gs~dg~I~iwd~ 237 (474)
.+.++|+++.++|.|....|.+-|..+-+.++.++ -|...|+.|.|.|.. -.||++.-.|.|.+||.
T Consensus 18 ~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~ 96 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF 96 (1062)
T ss_pred ccccccCccceEEEecCceEEEEehhhhhhhhccc-cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence 78899999999999999999999999999988887 478999999998731 25777888899999999
Q ss_pred CCCeEEEEecCCCCcEEEEEec------CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec-CCCEEEEEe
Q 011971 238 SRCKRVRTMEGHRLRVGALAWS------SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGG 310 (474)
Q Consensus 238 ~~~~~~~~~~~h~~~V~~l~~~------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~lasg~ 310 (474)
..+..+..+..|..++..++|- .+.|++-.....|.+|+..+++...+ ...-.....|+.+.| |.+++..-+
T Consensus 97 ~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk-~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 97 VLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK-YDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred hhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec-cccCCcceeeeeeCCCCcceEEEEc
Confidence 9999888999999999999995 26788888889999999999885443 333334567788888 677787777
Q ss_pred CCCcEEEEECCC-------CcceEEEccCCC-------------------------cEEEEEECCCCCcEEEEecCCCCC
Q 011971 311 NDNRLFVWNQHS-------TQPVLKYCEHTA-------------------------AVKAIAWSPHLHGLLASGGGTADR 358 (474)
Q Consensus 311 ~Dg~v~iwd~~~-------~~~~~~~~~h~~-------------------------~V~~l~~sp~~~~ll~sg~Gt~d~ 358 (474)
..|.|.+-+.-. ++..+.-..|.. ..-.++|+|+-++++... ..+
T Consensus 176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~---~pr 252 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT---FPR 252 (1062)
T ss_pred cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE---ecc
Confidence 788888877532 222222222221 012357788776666554 588
Q ss_pred eEEEEECCCCceeeeecCC-CCeEEEEEcCCCC--eEEEEEecCCCeEEEEECCCCc----------------eeEEEcC
Q 011971 359 CIRFWNTTTNTHLSCMDTG-SQVCNLVWSKNVN--ELVSTHGYSQNQIIVWRYPTMS----------------KLATLTG 419 (474)
Q Consensus 359 ~I~iwd~~~~~~~~~~~~~-~~v~~l~~s~~~~--~l~~~~g~~dg~I~iwd~~~~~----------------~~~~l~~ 419 (474)
.+.++|++-..++..+... +.+.-+.|-|+++ .|++ +..+|.+.+|--+... .+..+..
T Consensus 253 ellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lfc--lH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~ 330 (1062)
T KOG1912|consen 253 ELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFC--LHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRP 330 (1062)
T ss_pred ceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEE--EecCCeEEEEEeeccCccccccchhhccccccceEEEee
Confidence 9999999998888887643 3355566666654 5666 6689999999765421 1111111
Q ss_pred -CCccEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCCCC
Q 011971 420 -HTFRVLYLAISPD-GQTIVTGAGDETLRFWNVFPSPKS 456 (474)
Q Consensus 420 -h~~~V~~l~~spd-g~~l~t~s~Dg~I~iW~l~~~~~~ 456 (474)
.+.++...+..|. ...++.--.+|.+.+|++.++...
T Consensus 331 m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~ 369 (1062)
T KOG1912|consen 331 MEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH 369 (1062)
T ss_pred chhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence 1222333344443 334444556788899999875543
No 263
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.27 E-value=7.4e-09 Score=104.14 Aligned_cols=267 Identities=15% Similarity=0.081 Sum_probs=170.8
Q ss_pred CCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEE
Q 011971 177 SHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGAL 256 (474)
Q Consensus 177 ~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l 256 (474)
.+.+++.+.++.|+.+|..+|+..-...++.. ...... .++..+++++.+|.|..+|..+++.+.............
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~-~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDER-LSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCC-cccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence 35566666788999999999998766554321 111222 246788899999999999999999887765333222223
Q ss_pred EecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCE-----EEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEcc
Q 011971 257 AWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEV-----CGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE 331 (474)
Q Consensus 257 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V-----~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~ 331 (474)
...++.++.++.+|.|..+|.++++. +-........+ .+... .+..++.+..++.+..+|.++++.+.....
T Consensus 142 ~v~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 142 LVANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred EEECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 33467888889999999999988763 22222211111 11111 134778888899999999999987665431
Q ss_pred CCC----cE---EEEEECC--CCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCe
Q 011971 332 HTA----AV---KAIAWSP--HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402 (474)
Q Consensus 332 h~~----~V---~~l~~sp--~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~ 402 (474)
... .+ ..+.-+| .+..+++++ .++.+..||..+|+.+........ .... ..+..+++ +..+|.
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~---~~g~l~a~d~~tG~~~W~~~~~~~-~~p~--~~~~~vyv--~~~~G~ 290 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVVDGGQVYAVS---YQGRVAALDLRSGRVLWKRDASSY-QGPA--VDDNRLYV--TDADGV 290 (377)
T ss_pred ccCCCCCchhhhhccCCccEEECCEEEEEE---cCCEEEEEECCCCcEEEeeccCCc-cCce--EeCCEEEE--ECCCCe
Confidence 100 00 0010011 234455544 689999999999988776653321 1122 24566777 568999
Q ss_pred EEEEECCCCceeEEEcCCCc-cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 011971 403 IIVWRYPTMSKLATLTGHTF-RVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNT 459 (474)
Q Consensus 403 I~iwd~~~~~~~~~l~~h~~-~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~ 459 (474)
|..+|..+++.+........ ....... .+..|++++.||.|+++|..+++.....
T Consensus 291 l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 291 VVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARL 346 (377)
T ss_pred EEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 99999999988765532211 1222222 4668999999999999999887665433
No 264
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.26 E-value=4e-08 Score=97.48 Aligned_cols=256 Identities=14% Similarity=0.097 Sum_probs=161.9
Q ss_pred eeeeCCC-Cc-EEEEEc----CCeEEEEeCCC--CCEEEEEecC-CCCCEEEEEEcCCCCEEEEEeC-CCcEEEecCCC-
Q 011971 171 NLVDWSS-HN-VLAVGL----GNCVYLWNACS--SKVTKLCDLG-IDDSVCSVGWANRNTHLAVGTS-HGKVQIWDASR- 239 (474)
Q Consensus 171 ~~l~~s~-~~-~la~~~----d~~V~lwd~~~--~~~~~~~~~~-~~~~V~~v~~sp~g~~la~gs~-dg~I~iwd~~~- 239 (474)
..+.+++ ++ +.++.. .+.|..|.+.. +++..+-... .....+.++++|++++|+++.. +|.|.++++..
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~ 119 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD 119 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC
Confidence 3445555 34 444443 35788777665 4554444332 3456788999999999999875 89999999986
Q ss_pred CeEEEE---ec----------CCCCcEEEEEecC--CEEEEE-eCCCcEEEEECcCCcceE---eee-cCcCCCEEEEEE
Q 011971 240 CKRVRT---ME----------GHRLRVGALAWSS--SLLSSG-SRDKSILQRDIRAQEDFV---SKL-SGHKSEVCGLKW 299 (474)
Q Consensus 240 ~~~~~~---~~----------~h~~~V~~l~~~~--~~l~sg-s~dg~I~iwd~~~~~~~~---~~~-~~h~~~V~~l~~ 299 (474)
+..... +. .......++.|++ +++++. -....|.+|++......+ ..+ .........+.|
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f 199 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF 199 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE
Confidence 433322 21 1234578888885 455554 344579999987655212 111 234466889999
Q ss_pred ecCCCEEEEEe-CCCcEEEEECC--CCc--ceEEEcc------CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECC--
Q 011971 300 SYDNRELASGG-NDNRLFVWNQH--STQ--PVLKYCE------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT-- 366 (474)
Q Consensus 300 spd~~~lasg~-~Dg~v~iwd~~--~~~--~~~~~~~------h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~-- 366 (474)
+|+++++.+.. .++.|.++++. .+. .+..+.. .......|+++|++++|+++.. ....|.+|++.
T Consensus 200 ~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr--~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 200 SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR--GSNSISVFDLDPA 277 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC--TTTEEEEEEECTT
T ss_pred cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec--cCCEEEEEEEecC
Confidence 99999876654 57889999988 332 2222221 1225789999999999999876 57889999983
Q ss_pred CCc--eeeeecC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC--CCceeEEEc-CCCccEEEEEE
Q 011971 367 TNT--HLSCMDT-GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP--TMSKLATLT-GHTFRVLYLAI 429 (474)
Q Consensus 367 ~~~--~~~~~~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~--~~~~~~~l~-~h~~~V~~l~~ 429 (474)
+++ .+..+.. +.....+.++|+|++|+++ ...++.|.+|++. ++.....-. ..-....||.|
T Consensus 278 ~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va-~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 278 TGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVA-NQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTEEEEEEEEESSSSEEEEEE-TTSSEEEEE-ETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCceEEEEEEeCCCCCccEEEEeCCCCEEEEE-ecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 333 3344444 5559999999999999996 5577889999873 554433221 12233455554
No 265
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.25 E-value=4.7e-09 Score=105.57 Aligned_cols=254 Identities=15% Similarity=0.061 Sum_probs=165.1
Q ss_pred CCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcE---
Q 011971 177 SHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRV--- 253 (474)
Q Consensus 177 ~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V--- 253 (474)
.+.+++++.++.|+.+|..+|+..-...+. +.+.+.-.. .+..+++++.+|.|..||.++++.+..+......+
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLS--SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccC--ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 355666677899999999999987655432 233221111 34577888889999999999999887765433221
Q ss_pred --EEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcC---CC------E-EEEEEecCCCEEEEEeCCCcEEEEECC
Q 011971 254 --GALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK---SE------V-CGLKWSYDNRELASGGNDNRLFVWNQH 321 (474)
Q Consensus 254 --~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~---~~------V-~~l~~spd~~~lasg~~Dg~v~iwd~~ 321 (474)
.+....++.++.+..+|.+..+|.+++......-.... .. + ....+ .+..+++++.+|.++.||..
T Consensus 182 ~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~ 259 (377)
T TIGR03300 182 GSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLR 259 (377)
T ss_pred CCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECC
Confidence 11222346788888999999999988763221111000 00 0 11111 35578888889999999999
Q ss_pred CCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCC-eEEEEEcCCCCeEEEEEecC
Q 011971 322 STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-TGSQ-VCNLVWSKNVNELVSTHGYS 399 (474)
Q Consensus 322 ~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-~~~~-v~~l~~s~~~~~l~~~~g~~ 399 (474)
+++.+..... .. ...... .+..+++.. .||.|..+|..+++.+.... .... ...... .+..+++ +..
T Consensus 260 tG~~~W~~~~-~~-~~~p~~--~~~~vyv~~---~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~--~~~ 328 (377)
T TIGR03300 260 SGRVLWKRDA-SS-YQGPAV--DDNRLYVTD---ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVV--GDF 328 (377)
T ss_pred CCcEEEeecc-CC-ccCceE--eCCEEEEEC---CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEE--EeC
Confidence 9988776642 11 122222 344455543 68999999999998876653 2222 222222 3567777 778
Q ss_pred CCeEEEEECCCCceeEEEcCCCccEEE-EEECCCCCEEEEEeCCCcEEEE
Q 011971 400 QNQIIVWRYPTMSKLATLTGHTFRVLY-LAISPDGQTIVTGAGDETLRFW 448 (474)
Q Consensus 400 dg~I~iwd~~~~~~~~~l~~h~~~V~~-l~~spdg~~l~t~s~Dg~I~iW 448 (474)
+|.|+++|..+++.+..+..+...+.. .++. + +.|+.++.||.|+.|
T Consensus 329 ~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 329 EGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 999999999999999988866644322 2332 3 358889999999876
No 266
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=4.2e-11 Score=130.81 Aligned_cols=192 Identities=13% Similarity=0.196 Sum_probs=156.2
Q ss_pred eeeeCCC--CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecC
Q 011971 171 NLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG 248 (474)
Q Consensus 171 ~~l~~s~--~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~ 248 (474)
.++.=+| -.+|+++.||.|++|....++.+-.........|+.+.|+.+|+.+.++..||.+.+|.+. .+.....+.
T Consensus 2212 ~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qc 2290 (2439)
T KOG1064|consen 2212 RRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQC 2290 (2439)
T ss_pred eeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceecccc
Confidence 3444444 3578888999999999998888777766555899999999999999999999999999987 667777888
Q ss_pred CCCcEEEEEecCCEEEEEe---CCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcc
Q 011971 249 HRLRVGALAWSSSLLSSGS---RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP 325 (474)
Q Consensus 249 h~~~V~~l~~~~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~ 325 (474)
|.....++.|-+..+++++ .++.+.+||..........-..|.+.++++++-|..+.|++||.+|.|++||++..+.
T Consensus 2291 hnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2291 HNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred CCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence 9999999999888888775 4689999997654422222378999999999999999999999999999999998888
Q ss_pred eEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC
Q 011971 326 VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT 376 (474)
Q Consensus 326 ~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~ 376 (474)
.+.+.. ++ .+..+++|+ ..|.|+||++.....++.+..
T Consensus 2371 ~h~~~~---------~~--~~~~f~~~s--s~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2371 RHTFQA---------LD--TREYFVTGS--SEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred HHHhhh---------hh--hhheeeccC--cccceEEEEccccchhhcCch
Confidence 777754 33 344677765 899999999988777766653
No 267
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=2.1e-10 Score=120.24 Aligned_cols=186 Identities=19% Similarity=0.281 Sum_probs=147.0
Q ss_pred eCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCE-----EEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecC
Q 011971 174 DWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSV-----CSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG 248 (474)
Q Consensus 174 ~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V-----~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~ 248 (474)
.|-..+++.+..++.+.+||...+.+.... .+...+ .-+-++++.-++++|+--+.|.+|+......-..+.+
T Consensus 96 ~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i--~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~G 173 (967)
T KOG0974|consen 96 FEENKKIALVTSRNSLLIRDSKNSSVLSKI--QSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKG 173 (967)
T ss_pred hhhcceEEEEEcCceEEEEecccCceehhc--CCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecc
Confidence 344466777778899999999877765544 233222 2233456667999999999999999874444446889
Q ss_pred CCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcce
Q 011971 249 HRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV 326 (474)
Q Consensus 249 h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~ 326 (474)
|.+.|..+.|+ +.++++.++|.++++|++.+.+......-+|...|..++|.|+ .+++++.|.++++|+.. +..+
T Consensus 174 HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l 250 (967)
T KOG0974|consen 174 HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQL 250 (967)
T ss_pred cCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc-ccee
Confidence 99999999994 7999999999999999999988666577899999999999998 99999999999999765 4444
Q ss_pred EEEccCCC-cEEEEEECCCCCcEEEEecCCCCCeEEEEECCC
Q 011971 327 LKYCEHTA-AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (474)
Q Consensus 327 ~~~~~h~~-~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~ 367 (474)
..+.+|.. .+..++..+... ++++++ .|+.+++||+..
T Consensus 251 ~~y~~h~g~~iw~~~~~~~~~-~~vT~g--~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 251 EVYDEHSGKGIWKIAVPIGVI-IKVTGG--NDSTLKLWDLNG 289 (967)
T ss_pred hhhhhhhhcceeEEEEcCCce-EEEeec--cCcchhhhhhhc
Confidence 47777754 688899888765 666665 899999999764
No 268
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.22 E-value=1.2e-08 Score=99.68 Aligned_cols=261 Identities=14% Similarity=0.173 Sum_probs=177.4
Q ss_pred CeEEEEeCCCCCEEEEEecCCCCC--EE-EEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecC-CCCcEEEEEecCC-
Q 011971 187 NCVYLWNACSSKVTKLCDLGIDDS--VC-SVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG-HRLRVGALAWSSS- 261 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~~~~~--V~-~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~~~~- 261 (474)
+.+.+||..++.++..+... ..+ .. -+.|+.+.+++|--. ...+.|+++...-....+.. ....|....|+|.
T Consensus 108 n~~~vwd~~sg~iv~sf~~~-~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGI-SQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred CceeEEeccCceeEeecccc-CCcccccceeeeeecchhhhhhc-cCeEEEEecCCccccCchhhccccceeeEEecCCC
Confidence 46899999999998777542 222 44 678999888877653 34699999722111111111 1345667777642
Q ss_pred ---EEEE-----EeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEe-----------CCCcEEEEECCC
Q 011971 262 ---LLSS-----GSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG-----------NDNRLFVWNQHS 322 (474)
Q Consensus 262 ---~l~s-----gs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~-----------~Dg~v~iwd~~~ 322 (474)
.|+. ++.++.+++|.+.... .+..-.-....=+.+.|++.|++|++-- ....++|++++.
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp~~s-~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIPKNS-VLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEccCCC-eeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 3332 4567889999887544 3333333334457899999998876421 135688999874
Q ss_pred CcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEE-ecCCC
Q 011971 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTH-GYSQN 401 (474)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-g~~dg 401 (474)
... .....-.++|...+|.|+++.+.++. |..+..+.++|++.. +...-....-..+.|+|.+++++++. +...|
T Consensus 265 ~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~-g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~g 340 (561)
T COG5354 265 RSI-PVEKDLKDPVHDFTWEPLSSRFAVIS-GYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQG 340 (561)
T ss_pred ccc-ceeccccccceeeeecccCCceeEEe-cccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCcccc
Confidence 433 33336688999999999998776665 458999999999876 44444455566788999999998851 33468
Q ss_pred eEEEEECCCCceeE-EEcCCCccEEEEEECCCCCEEEEEe------CCCcEEEEeCCCCCCC
Q 011971 402 QIIVWRYPTMSKLA-TLTGHTFRVLYLAISPDGQTIVTGA------GDETLRFWNVFPSPKS 456 (474)
Q Consensus 402 ~I~iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~l~t~s------~Dg~I~iW~l~~~~~~ 456 (474)
.|.+||......+. .+.+.. ...+.|+|||+++.+.. .|..|.+|++......
T Consensus 341 ni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 341 NIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred ceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 99999988665554 665544 34578999999988764 3788999999876544
No 269
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.22 E-value=1e-09 Score=100.22 Aligned_cols=221 Identities=18% Similarity=0.208 Sum_probs=148.5
Q ss_pred EEcCCeEEEEeCCCCCEEEEEe-cC-CC---CCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEE--EEecCCCCcEEE
Q 011971 183 VGLGNCVYLWNACSSKVTKLCD-LG-ID---DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV--RTMEGHRLRVGA 255 (474)
Q Consensus 183 ~~~d~~V~lwd~~~~~~~~~~~-~~-~~---~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~--~~~~~h~~~V~~ 255 (474)
+-..|+|.++..........+. +. .. ....++.|++.+..++++-.+|.+.+-+....... +..+.|...++.
T Consensus 91 a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wt 170 (339)
T KOG0280|consen 91 AHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWT 170 (339)
T ss_pred ccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeee
Confidence 3356788888654332222211 10 11 12457889999999999999999996665554443 478899999999
Q ss_pred EEec---CCEEEEEeCCCcEEEEECcCCcceEee-ecCcCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCC-CcceEEE
Q 011971 256 LAWS---SSLLSSGSRDKSILQRDIRAQEDFVSK-LSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHS-TQPVLKY 329 (474)
Q Consensus 256 l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~sp-d~~~lasg~~Dg~v~iwd~~~-~~~~~~~ 329 (474)
..|+ ++++.+|+.|+.+..||+|.+...+.. .+-|...|++|.-+| .+.++++|+.|-.|++||.++ ++++..-
T Consensus 171 a~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~ 250 (339)
T KOG0280|consen 171 AKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA 250 (339)
T ss_pred eecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC
Confidence 9997 789999999999999999966655444 567999999999887 577999999999999999995 5666544
Q ss_pred ccCCCcEEEEEECCCCCc-EEEEecCCCCCeEEEEECCCCcee--eeec----CCCCeEEEEEcCCCCeEEEEEecCCCe
Q 011971 330 CEHTAAVKAIAWSPHLHG-LLASGGGTADRCIRFWNTTTNTHL--SCMD----TGSQVCNLVWSKNVNELVSTHGYSQNQ 402 (474)
Q Consensus 330 ~~h~~~V~~l~~sp~~~~-ll~sg~Gt~d~~I~iwd~~~~~~~--~~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~ 402 (474)
.-.+.|..+.++|.-.. +++++ .-+-.++-+...+... ..+. +.+-+..-.|.....+++++ .+-|+.
T Consensus 251 -~v~GGVWRi~~~p~~~~~lL~~C---Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC-sFYDk~ 325 (339)
T KOG0280|consen 251 -KVGGGVWRIKHHPEIFHRLLAAC---MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC-SFYDKK 325 (339)
T ss_pred -ccccceEEEEecchhhhHHHHHH---HhcCceEEEecccccchheeeeccccccceeeccccccccceeeee-eccccc
Confidence 34588999999996543 33333 3444666666554322 1111 23334444453333445554 445555
Q ss_pred EE-EEEC
Q 011971 403 II-VWRY 408 (474)
Q Consensus 403 I~-iwd~ 408 (474)
|+ +|-.
T Consensus 326 ~~~~Wl~ 332 (339)
T KOG0280|consen 326 IRQLWLH 332 (339)
T ss_pred eeeeeee
Confidence 44 6643
No 270
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=7e-09 Score=102.11 Aligned_cols=278 Identities=15% Similarity=0.168 Sum_probs=189.2
Q ss_pred cceeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeC-----------CCcEEEe
Q 011971 168 FYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-----------HGKVQIW 235 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~-----------dg~I~iw 235 (474)
+.-+.+.||| +.+|+.-....|.+|--.+-...+.+ .|. .|.-+.|||..+||++-+. ...++||
T Consensus 211 WTetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF--~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 211 WTETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRF--YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred ceeeeEEecCCceEEEEEeccceeeecCccHHHHHhc--cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 4457889999 78888888889999987776665555 454 5889999999999998653 1469999
Q ss_pred cCCCCeEEEEecC--CCCcEE-EEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEe
Q 011971 236 DASRCKRVRTMEG--HRLRVG-ALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG 310 (474)
Q Consensus 236 d~~~~~~~~~~~~--h~~~V~-~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~ 310 (474)
|+.+|...+.+.. ....++ -+.|+ ..+++.-.. ..|.||+...-. ++..-.-.-..|....|+|.++.||.-.
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~-lld~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM-LLDKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCcee-eecccccCCccccCcccCCCcceEEEEc
Confidence 9999999888865 222233 24565 456655554 678899876532 1111112335688899999988887643
Q ss_pred CC-----CcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecC-------CCCCeEEEEECCCC-ceeeeecCC
Q 011971 311 ND-----NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGG-------TADRCIRFWNTTTN-THLSCMDTG 377 (474)
Q Consensus 311 ~D-----g~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~G-------t~d~~I~iwd~~~~-~~~~~~~~~ 377 (474)
.. ..+-+-.+.+++.+.+-.-++-.=..+.|-..|.+|.+-... +.-..+.|+.++.. -++..+...
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk 445 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK 445 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecc
Confidence 21 246666777776666555455444557777777766553210 01123455555443 345566677
Q ss_pred CCeEEEEEcCCCCeEEEEEecC-CCeEEEEECCC-C---ceeEEEcCCCccEEEEEECCCCCEEEEEe---CCCcEEEEe
Q 011971 378 SQVCNLVWSKNVNELVSTHGYS-QNQIIVWRYPT-M---SKLATLTGHTFRVLYLAISPDGQTIVTGA---GDETLRFWN 449 (474)
Q Consensus 378 ~~v~~l~~s~~~~~l~~~~g~~-dg~I~iwd~~~-~---~~~~~l~~h~~~V~~l~~spdg~~l~t~s---~Dg~I~iW~ 449 (474)
..|...+|-|.|+.+++.+|.. ..++.+|.+.+ . ..+..+.. ...+.+.|+|.|++++.++ ..|.+.++|
T Consensus 446 e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 446 ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 8899999999999999987754 45788998873 2 23333332 3467899999999988764 578999999
Q ss_pred CCC
Q 011971 450 VFP 452 (474)
Q Consensus 450 l~~ 452 (474)
...
T Consensus 524 ~~~ 526 (698)
T KOG2314|consen 524 TDY 526 (698)
T ss_pred cch
Confidence 985
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.18 E-value=3.2e-08 Score=110.85 Aligned_cols=236 Identities=13% Similarity=0.153 Sum_probs=158.9
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEecCCCCeEEEEecC--C------------CCcEEEEEec--CCEEEEE-eCCCcEE
Q 011971 212 CSVGWANR-NTHLAVGTSHGKVQIWDASRCKRVRTMEG--H------------RLRVGALAWS--SSLLSSG-SRDKSIL 273 (474)
Q Consensus 212 ~~v~~sp~-g~~la~gs~dg~I~iwd~~~~~~~~~~~~--h------------~~~V~~l~~~--~~~l~sg-s~dg~I~ 273 (474)
..+++++. +.++++-+.++.|++||... +.+..+.+ . -.....++++ ++.|+++ ..++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 36788875 55666667788999999764 44444332 1 1234667776 3555444 4557788
Q ss_pred EEECcCCcceEeeecCc-----------------CCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCcceEEEcc----
Q 011971 274 QRDIRAQEDFVSKLSGH-----------------KSEVCGLKWSY-DNRELASGGNDNRLFVWNQHSTQPVLKYCE---- 331 (474)
Q Consensus 274 iwd~~~~~~~~~~~~~h-----------------~~~V~~l~~sp-d~~~lasg~~Dg~v~iwd~~~~~~~~~~~~---- 331 (474)
++|..+.. +..+.+- -....+++++| ++..+++...++.|++||..++... .+.+
T Consensus 650 ~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 89987654 3322110 12346899999 5667777788899999998776432 2211
Q ss_pred -----------CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-----------C-----------CC
Q 011971 332 -----------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD-----------T-----------GS 378 (474)
Q Consensus 332 -----------h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~-----------~-----------~~ 378 (474)
.-.....|+++|++..|+++.. .++.|++||+.++....... . -.
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEEC--CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 1123567999999988888765 68999999998765321110 0 01
Q ss_pred CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEc-------------CCCccEEEEEECCCCCEEEEEeCCCcE
Q 011971 379 QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLT-------------GHTFRVLYLAISPDGQTIVTGAGDETL 445 (474)
Q Consensus 379 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-------------~h~~~V~~l~~spdg~~l~t~s~Dg~I 445 (474)
....++++++|+.+++ ...++.|++||..++....... +.-.....|+++++|+.+++-+.++.|
T Consensus 805 ~P~Gvavd~dG~LYVA--Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVA--DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred CCceeeEeCCCcEEEE--ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 2468899999986666 6688999999998765543221 112356789999999988888899999
Q ss_pred EEEeCCCCCC
Q 011971 446 RFWNVFPSPK 455 (474)
Q Consensus 446 ~iW~l~~~~~ 455 (474)
++||+.++..
T Consensus 883 rvid~~~~~~ 892 (1057)
T PLN02919 883 RYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCcc
Confidence 9999988654
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=1.4e-09 Score=109.60 Aligned_cols=241 Identities=13% Similarity=0.247 Sum_probs=170.1
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC---------------eEEEEecCCCCcEEEEEecC--CEEEEEe
Q 011971 205 LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC---------------KRVRTMEGHRLRVGALAWSS--SLLSSGS 267 (474)
Q Consensus 205 ~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~---------------~~~~~~~~h~~~V~~l~~~~--~~l~sgs 267 (474)
++......|++|+....++|+|+.||.++|..+.+. ..-.++.||.+.|.-+.|+. ..|.+..
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 355678899999999999999999999999977542 12345779999999999994 6899999
Q ss_pred CCCcEEEEECcCCcceEeee-cCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCC
Q 011971 268 RDKSILQRDIRAQEDFVSKL-SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH 346 (474)
Q Consensus 268 ~dg~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~ 346 (474)
.+|.|.+|-+-.+.-+...+ ...++-|.+++|+.||..++....||.|.|=.+...+ +.--.-.......+.|++|..
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D~~ 169 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSEDLE 169 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeecccHH
Confidence 99999999887665221111 2355779999999999999999999999887765432 211111112234789999988
Q ss_pred cEEEEecCCCCCeEEEEECCCCc-------eeeeec-----CCCCeEEEEEc--------CCCCeEEEEEecCCCeEEEE
Q 011971 347 GLLASGGGTADRCIRFWNTTTNT-------HLSCMD-----TGSQVCNLVWS--------KNVNELVSTHGYSQNQIIVW 406 (474)
Q Consensus 347 ~ll~sg~Gt~d~~I~iwd~~~~~-------~~~~~~-----~~~~v~~l~~s--------~~~~~l~~~~g~~dg~I~iw 406 (474)
.+++.- ..|.+.+||....- +..... .+..+..+.|. |+...|++ .+..|.+.|.
T Consensus 170 ~~Lf~~---ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lav--cy~nGr~QiM 244 (1189)
T KOG2041|consen 170 QALFKK---ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAV--CYANGRMQIM 244 (1189)
T ss_pred HHHhhh---cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEE--EEcCceehhh
Confidence 666633 68999999976431 111111 12336666664 46677887 7788988887
Q ss_pred ECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCC---------cEEEEeCCC
Q 011971 407 RYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDE---------TLRFWNVFP 452 (474)
Q Consensus 407 d~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg---------~I~iW~l~~ 452 (474)
.-.+......+.. .-.|....|+++|..|+.++.|. .|.|+....
T Consensus 245 R~eND~~Pvv~dt-gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G 298 (1189)
T KOG2041|consen 245 RSENDPEPVVVDT-GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG 298 (1189)
T ss_pred hhcCCCCCeEEec-ccEeecceecCCCcEEEEccCcccccCccccceEEEeccch
Confidence 7654433333322 26788999999999999987642 466665443
No 273
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=3.8e-10 Score=123.57 Aligned_cols=198 Identities=17% Similarity=0.256 Sum_probs=155.4
Q ss_pred CCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcce
Q 011971 249 HRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV 326 (474)
Q Consensus 249 h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~ 326 (474)
+-..|.++.-++ .+.++|+.||.|++|....+...+..-......|+.+.|+.+|+.+..+..||.+.+|... .++.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence 344566665554 5789999999999999887775544444445889999999999999999999999999987 6777
Q ss_pred EEEccCCCcEEEEEECCCCCcEEEE-ecCCCCCeEEEEECCCCce--eeeecCCCCeEEEEEcCCCCeEEEEEecCCCeE
Q 011971 327 LKYCEHTAAVKAIAWSPHLHGLLAS-GGGTADRCIRFWNTTTNTH--LSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQI 403 (474)
Q Consensus 327 ~~~~~h~~~V~~l~~sp~~~~ll~s-g~Gt~d~~I~iwd~~~~~~--~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I 403 (474)
...+.|......+.|-. . ++++ |..+.++.+.+||..-... +-..-|...++++++.|..+.|++ |+.+|.|
T Consensus 2286 ~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllis--ggr~G~v 2360 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLIS--GGRKGEV 2360 (2439)
T ss_pred eccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEe--cCCcCcE
Confidence 78888999999999986 3 4444 4445678899999754322 222457888999999999999999 9999999
Q ss_pred EEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCCC
Q 011971 404 IVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSE 462 (474)
Q Consensus 404 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~~~~ 462 (474)
++||++..+.++.++. +. ...++++|+..|.|+||++..-........+
T Consensus 2361 ~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred EEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence 9999988877766654 44 5668999999999999999887655544333
No 274
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.12 E-value=1.1e-08 Score=95.29 Aligned_cols=273 Identities=13% Similarity=0.228 Sum_probs=177.6
Q ss_pred ceeeeeCCC-CcEEEEEc-CCeEEEEeCCCCCE-----EEEE-----------ecCCCCCEEEEEEcCCCC--EEEEEeC
Q 011971 169 YLNLVDWSS-HNVLAVGL-GNCVYLWNACSSKV-----TKLC-----------DLGIDDSVCSVGWANRNT--HLAVGTS 228 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~~-d~~V~lwd~~~~~~-----~~~~-----------~~~~~~~V~~v~~sp~g~--~la~gs~ 228 (474)
.+.++.|.- +..||+|. +|.|.++.-..... ...+ .+.-...|..+.|.++++ .++..+.
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 367888876 88888886 67888886543221 1111 012245788999998764 6677778
Q ss_pred CCcEEEecCCCCeE-----------------------------------EEEe-cCCCCcEEEEEecC-CEEEEEeCCCc
Q 011971 229 HGKVQIWDASRCKR-----------------------------------VRTM-EGHRLRVGALAWSS-SLLSSGSRDKS 271 (474)
Q Consensus 229 dg~I~iwd~~~~~~-----------------------------------~~~~-~~h~~~V~~l~~~~-~~l~sgs~dg~ 271 (474)
|.+|++|.+..... .+.+ ..|+--|.++.++. ...+....|=.
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLR 186 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLR 186 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecccee
Confidence 99999998642110 0111 25778889999984 34445566778
Q ss_pred EEEEECcCCcceE--eeecCc-----CCCEEEEEEecC-CCEEEEEeCCCcEEEEECCCCcce----EE-----------
Q 011971 272 ILQRDIRAQEDFV--SKLSGH-----KSEVCGLKWSYD-NRELASGGNDNRLFVWNQHSTQPV----LK----------- 328 (474)
Q Consensus 272 I~iwd~~~~~~~~--~~~~~h-----~~~V~~l~~spd-~~~lasg~~Dg~v~iwd~~~~~~~----~~----------- 328 (474)
|.+|++....+.. .-++.+ ..-|++..|+|. .+.++..+..|+|++.|++..... ..
T Consensus 187 INLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rs 266 (433)
T KOG1354|consen 187 INLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRS 266 (433)
T ss_pred eeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchh
Confidence 9999987654322 222332 345888899994 578888899999999999853211 11
Q ss_pred -EccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECC-CCceeeeecCC----------------CCeEEEEEcCCCC
Q 011971 329 -YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT-TNTHLSCMDTG----------------SQVCNLVWSKNVN 390 (474)
Q Consensus 329 -~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~-~~~~~~~~~~~----------------~~v~~l~~s~~~~ 390 (474)
|.+--..|..+.|++.|+++++- .--+|++||+. ..+++.++... -.-..++|+.++.
T Consensus 267 ffseiIsSISDvKFs~sGryilsR----Dyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 267 FFSEIISSISDVKFSHSGRYILSR----DYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred hHHHHhhhhhceEEccCCcEEEEe----ccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 11223568899999999977762 23789999994 44455444321 1235688999998
Q ss_pred eEEEEEecCCCeEEEEECCCCcee-------------------EEEc--C-------------CCccEEEEEECCCCCEE
Q 011971 391 ELVSTHGYSQNQIIVWRYPTMSKL-------------------ATLT--G-------------HTFRVLYLAISPDGQTI 436 (474)
Q Consensus 391 ~l~~~~g~~dg~I~iwd~~~~~~~-------------------~~l~--~-------------h~~~V~~l~~spdg~~l 436 (474)
++++ |+-.+.+++|+...+... .... + ....|...+|+|..+.|
T Consensus 343 ~v~T--Gsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~i 420 (433)
T KOG1354|consen 343 YVMT--GSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSI 420 (433)
T ss_pred eEec--ccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCcccee
Confidence 9998 889999999995433210 0000 1 11236677899998888
Q ss_pred EEEeCCCcEEEE
Q 011971 437 VTGAGDETLRFW 448 (474)
Q Consensus 437 ~t~s~Dg~I~iW 448 (474)
+.+..+ .+++|
T Consensus 421 a~aatn-nlyif 431 (433)
T KOG1354|consen 421 AVAATN-NLYIF 431 (433)
T ss_pred eeeecC-ceEEe
Confidence 887665 45554
No 275
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.08 E-value=1.8e-07 Score=103.10 Aligned_cols=274 Identities=13% Similarity=0.188 Sum_probs=172.6
Q ss_pred eeeeeCCC--CcEEEEEcCCeEEEE----eCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCC-----
Q 011971 170 LNLVDWSS--HNVLAVGLGNCVYLW----NACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDAS----- 238 (474)
Q Consensus 170 v~~l~~s~--~~~la~~~d~~V~lw----d~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~----- 238 (474)
+..+.+-+ ..++++..+|.|.+. +..+..+..+-. -+..|.+++||||+..|+..+.+|+|.+-.-.
T Consensus 78 ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~--vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~ 155 (928)
T PF04762_consen 78 IVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS--VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPIS 155 (928)
T ss_pred EEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE--EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEE
Confidence 55566655 456666678888888 666555544432 36789999999999999999999988775421
Q ss_pred ----------C--------CeEEEEecC------------------------CCCcEEEEEec--CCEEEEEeC---C--
Q 011971 239 ----------R--------CKRVRTMEG------------------------HRLRVGALAWS--SSLLSSGSR---D-- 269 (474)
Q Consensus 239 ----------~--------~~~~~~~~~------------------------h~~~V~~l~~~--~~~l~sgs~---d-- 269 (474)
. |+.-..+.| +...-..++|. +.++++.+- .
T Consensus 156 E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~ 235 (928)
T PF04762_consen 156 EVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGS 235 (928)
T ss_pred EeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCc
Confidence 0 111111111 22244567886 467777764 2
Q ss_pred -CcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC---CCcEEEEECCCCcceEEE----ccCCCcEEEEEE
Q 011971 270 -KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN---DNRLFVWNQHSTQPVLKY----CEHTAAVKAIAW 341 (474)
Q Consensus 270 -g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~---Dg~v~iwd~~~~~~~~~~----~~h~~~V~~l~~ 341 (474)
+.|+||+-. +. .......-.+--.+++|-|.|+++|+... ...|.+|.- +|-....| ......|..++|
T Consensus 236 ~R~iRVy~Re-G~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~W 312 (928)
T PF04762_consen 236 RRVIRVYSRE-GE-LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAW 312 (928)
T ss_pred eeEEEEECCC-ce-EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEE
Confidence 578899854 22 22222222233356899999999998764 345677763 34333333 234678999999
Q ss_pred CCCCCcEEEEecCCCCCeEEEEECCCCc--eeeeec--CCCCeEEEEEcCCCCe-EEEEEecCCCeEEEEECC----CC-
Q 011971 342 SPHLHGLLASGGGTADRCIRFWNTTTNT--HLSCMD--TGSQVCNLVWSKNVNE-LVSTHGYSQNQIIVWRYP----TM- 411 (474)
Q Consensus 342 sp~~~~ll~sg~Gt~d~~I~iwd~~~~~--~~~~~~--~~~~v~~l~~s~~~~~-l~~~~g~~dg~I~iwd~~----~~- 411 (474)
++++. +||.-- ...|.+|-..+.. ..+++. ....+..+.|+|.... |.+ ....|.+..+++. .+
T Consensus 313 n~ds~-iLAv~~---~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v--~t~~g~~~~~~~~~~v~~s~ 386 (928)
T PF04762_consen 313 NSDSE-ILAVWL---EDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHV--LTSNGQYEIYDFAWDVSRSP 386 (928)
T ss_pred CCCCC-EEEEEe---cCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEE--EecCCcEEEEEEEEEEEecC
Confidence 99988 444442 3449999988764 233333 3344566999996543 444 3344666554431 11
Q ss_pred -------ceeEEEc-----------------------CCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 412 -------SKLATLT-----------------------GHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 412 -------~~~~~l~-----------------------~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
..+..+. .....|.+++|++++..+++-..||.|.+|......
T Consensus 387 ~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 387 GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 0111111 124679999999999889999999999999976554
No 276
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.05 E-value=4.3e-07 Score=83.47 Aligned_cols=230 Identities=12% Similarity=0.129 Sum_probs=142.7
Q ss_pred CCcEEEEEcCCeEEEEeCCCC--CEEEEEecC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecC----
Q 011971 177 SHNVLAVGLGNCVYLWNACSS--KVTKLCDLG--IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG---- 248 (474)
Q Consensus 177 ~~~~la~~~d~~V~lwd~~~~--~~~~~~~~~--~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~---- 248 (474)
.+++||+-.|.+|.|=..... .++..+.+. ..-.=.-++||||+.+||.+...|+|++||+... .+..+..
T Consensus 8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~ 86 (282)
T PF15492_consen 8 DGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSF 86 (282)
T ss_pred CCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCccccc
Confidence 388999999999999887654 334444442 2334578999999999999999999999998753 3333331
Q ss_pred ---CCCcEEEEEecC--------CEEEEEeCCCcEEEEECcCC--cc--e--Eeeec-CcCCCEEEEEEecCCCEEEEEe
Q 011971 249 ---HRLRVGALAWSS--------SLLSSGSRDKSILQRDIRAQ--ED--F--VSKLS-GHKSEVCGLKWSYDNRELASGG 310 (474)
Q Consensus 249 ---h~~~V~~l~~~~--------~~l~sgs~dg~I~iwd~~~~--~~--~--~~~~~-~h~~~V~~l~~spd~~~lasg~ 310 (474)
-...|..|.|-. ..|++-..+|.++-|-+..+ +. . ...+. .+...|+++.++|..++|++||
T Consensus 87 ~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG 166 (282)
T PF15492_consen 87 PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGG 166 (282)
T ss_pred CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEec
Confidence 234666777741 36777788888887776332 11 1 12222 2467899999999999988887
Q ss_pred CCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCC------eEEEEECCCCceeee-ecCCCCeEEE
Q 011971 311 NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR------CIRFWNTTTNTHLSC-MDTGSQVCNL 383 (474)
Q Consensus 311 ~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~------~I~iwd~~~~~~~~~-~~~~~~v~~l 383 (474)
.... +.+. -+.....+++-..-.+..+...+.. ..|+ ...+|.+-+...... ......|..|
T Consensus 167 ~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~-~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~km 235 (282)
T PF15492_consen 167 CEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTS-SEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKM 235 (282)
T ss_pred cCCC------CCcc----ccccccCceEEEEcCCCCcEEEccc-cCccccccccccceeeccceeeeeccccCCCceEEE
Confidence 6432 0000 0011222222222222222211111 0111 123444333222111 2245679999
Q ss_pred EEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCC
Q 011971 384 VWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH 420 (474)
Q Consensus 384 ~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h 420 (474)
..||||..|+++| .+|.|.+|++++......+..+
T Consensus 236 SlSPdg~~La~ih--~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 236 SLSPDGSLLACIH--FSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EECCCCCEEEEEE--cCCeEEEEecCcchhhcccchh
Confidence 9999999999965 8999999999998887776644
No 277
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=4.1e-08 Score=100.25 Aligned_cols=237 Identities=15% Similarity=0.233 Sum_probs=176.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC--------------CEEEEEeCCCcEEEE
Q 011971 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS--------------SLLSSGSRDKSILQR 275 (474)
Q Consensus 210 ~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--------------~~l~sgs~dg~I~iw 275 (474)
.-.++.|+|.| +||.|+. ..|.|.|..+-+.+..+.-|...|+.+.|.+ -+|+++...|.|.+|
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 36678999987 6777775 4799999999999999999999999999962 167888889999999
Q ss_pred ECcCCcceEeeecCcCCCEEEEEEec---CC-CEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCC-cEEE
Q 011971 276 DIRAQEDFVSKLSGHKSEVCGLKWSY---DN-RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLH-GLLA 350 (474)
Q Consensus 276 d~~~~~~~~~~~~~h~~~V~~l~~sp---d~-~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~-~ll~ 350 (474)
|..... .+..+..|...|..++|-+ +. ..|++-...+.|.+|+..+|+...+.........|+.+.|... ++.+
T Consensus 95 d~~~~s-~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 95 DFVLAS-VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred Eehhhh-hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEE
Confidence 998876 4666778888899998876 33 4566667778999999999999988877777888899999654 3444
Q ss_pred EecCCCCCeEEEEECCC-------CceeeeecC-------------CC-------------CeEEEEEcCCCCeEEEEEe
Q 011971 351 SGGGTADRCIRFWNTTT-------NTHLSCMDT-------------GS-------------QVCNLVWSKNVNELVSTHG 397 (474)
Q Consensus 351 sg~Gt~d~~I~iwd~~~-------~~~~~~~~~-------------~~-------------~v~~l~~s~~~~~l~~~~g 397 (474)
.| ..|.+.+-+.-. ++..+.... +. ....++|+|.-+.++.+
T Consensus 174 l~---s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi-- 248 (1062)
T KOG1912|consen 174 LG---SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI-- 248 (1062)
T ss_pred Ec---cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE--
Confidence 44 456665554321 111111100 00 01235678877666553
Q ss_pred cCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCC--EEEEEeCCCcEEEEeCCCCC
Q 011971 398 YSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQ--TIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 398 ~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~--~l~t~s~Dg~I~iW~l~~~~ 454 (474)
.-...+.|+|++-..++....-..+.+.-+.+-|+++ .|++.-.||.+.||--...+
T Consensus 249 ~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~ 307 (1062)
T KOG1912|consen 249 TFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEP 307 (1062)
T ss_pred EeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccC
Confidence 2567899999998888888876677777788888654 79999999999999866543
No 278
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.04 E-value=3.6e-07 Score=85.40 Aligned_cols=220 Identities=14% Similarity=0.071 Sum_probs=145.6
Q ss_pred CCeEEEEeCCCCCEEEEEecCC-CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecCCEEE
Q 011971 186 GNCVYLWNACSSKVTKLCDLGI-DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLS 264 (474)
Q Consensus 186 d~~V~lwd~~~~~~~~~~~~~~-~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~l~ 264 (474)
++.|..||..+|+..-...++. .....+. ..+++.++++++.++.|..||..+++.+................++.++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~ 80 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVY 80 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccc
Confidence 5789999999999887776632 2223322 2335677888889999999999999998877642221111355578888
Q ss_pred EEeCCCcEEEEECcCCcceEeeecCcC---CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCc------
Q 011971 265 SGSRDKSILQRDIRAQEDFVSKLSGHK---SEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAA------ 335 (474)
Q Consensus 265 sgs~dg~I~iwd~~~~~~~~~~~~~h~---~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~------ 335 (474)
.++.++.|..+|..+++.......... ..........++..++++..++.|..+|+++|+.+.........
T Consensus 81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 160 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPIS 160 (238)
T ss_dssp EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EE
T ss_pred cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCccee
Confidence 888899999999988885433222211 11222333334788999998999999999999998887653322
Q ss_pred ----EEEEEECCCCCcEEEEecCCCCCe-EEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011971 336 ----VKAIAWSPHLHGLLASGGGTADRC-IRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (474)
Q Consensus 336 ----V~~l~~sp~~~~ll~sg~Gt~d~~-I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 410 (474)
+..-....++ .++++. .++. +.+ |+.+++.+.... ...+.. .....+..+++ +..++.|..||..+
T Consensus 161 ~~~~~~~~~~~~~~-~v~~~~---~~g~~~~~-d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~--~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 161 SFSDINGSPVISDG-RVYVSS---GDGRVVAV-DLATGEKLWSKP-ISGIYS-LPSVDGGTLYV--TSSDGRLYALDLKT 231 (238)
T ss_dssp EETTEEEEEECCTT-EEEEEC---CTSSEEEE-ETTTTEEEEEEC-SS-ECE-CEECCCTEEEE--EETTTEEEEEETTT
T ss_pred eecccccceEEECC-EEEEEc---CCCeEEEE-ECCCCCEEEEec-CCCccC-CceeeCCEEEE--EeCCCEEEEEECCC
Confidence 1222222333 566654 4664 555 999999765433 333333 24567788887 44899999999999
Q ss_pred CceeE
Q 011971 411 MSKLA 415 (474)
Q Consensus 411 ~~~~~ 415 (474)
++.+-
T Consensus 232 G~~~W 236 (238)
T PF13360_consen 232 GKVVW 236 (238)
T ss_dssp TEEEE
T ss_pred CCEEe
Confidence 98764
No 279
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.02 E-value=2.6e-07 Score=89.72 Aligned_cols=173 Identities=13% Similarity=0.072 Sum_probs=130.4
Q ss_pred eeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC-cEEEecCCCCeEEEEecCCCC
Q 011971 173 VDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG-KVQIWDASRCKRVRTMEGHRL 251 (474)
Q Consensus 173 l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg-~I~iwd~~~~~~~~~~~~h~~ 251 (474)
.+-.++++++.-+-|.+.|.+...+-.+++ ++.+.|.-..+.-+++-++.|..|| .+-|||..+++.. .+...-+
T Consensus 327 fa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv---~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg 402 (668)
T COG4946 327 FAVVNGDYIALVSRGKAFIMRPWDGYSIQV---GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLG 402 (668)
T ss_pred hccCCCcEEEEEecCcEEEECCCCCeeEEc---CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCcc
Confidence 344567888888888888888877766544 6788899999999989999999999 8999998877644 4555667
Q ss_pred cEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCC----cEEEEECCCCcc
Q 011971 252 RVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDN----RLFVWNQHSTQP 325 (474)
Q Consensus 252 ~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg----~v~iwd~~~~~~ 325 (474)
.|.++..+ +..++.+.....|.+.|+.++. ....-+...+-|+.+.|+|+++++|-+--+| .|+++|+.+++.
T Consensus 403 ~I~av~vs~dGK~~vvaNdr~el~vididngn-v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 403 NIEAVKVSPDGKKVVVANDRFELWVIDIDNGN-VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred ceEEEEEcCCCcEEEEEcCceEEEEEEecCCC-eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 88998887 4678888888999999999987 3333455667899999999999999876655 689999987764
Q ss_pred eEEEccCCCcEEEEEECCCCCcEEEE
Q 011971 326 VLKYCEHTAAVKAIAWSPHLHGLLAS 351 (474)
Q Consensus 326 ~~~~~~h~~~V~~l~~sp~~~~ll~s 351 (474)
.. .+...+.=.+-+|.|++++|...
T Consensus 482 y~-vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 482 YD-VTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred EE-ecCCcccccCcccCCCCcEEEEE
Confidence 33 22333333455666666655433
No 280
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=5.1e-07 Score=91.57 Aligned_cols=213 Identities=11% Similarity=0.043 Sum_probs=134.2
Q ss_pred CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCE-EEEEeCC---CcEEEecCCCCeEEEEecCCCCcEEEEEecC--
Q 011971 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTH-LAVGTSH---GKVQIWDASRCKRVRTMEGHRLRVGALAWSS-- 260 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~-la~gs~d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~-- 260 (474)
..|++=|........+. .+ +.+....|+|||+. ++..+.+ ..|.++|+.+++...... ..+......|++
T Consensus 169 ~~l~~~d~dg~~~~~~~-~~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTYQKVIV-KG--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCceeEEc-cC--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCC
Confidence 36777777655543333 22 37889999999985 6654443 468899998876554433 455566677884
Q ss_pred C-EEEEEeCC--CcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCC-C--cEEEEECCCCcceEEEccCCC
Q 011971 261 S-LLSSGSRD--KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND-N--RLFVWNQHSTQPVLKYCEHTA 334 (474)
Q Consensus 261 ~-~l~sgs~d--g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~D-g--~v~iwd~~~~~~~~~~~~h~~ 334 (474)
. ++++.+.+ ..|.++|+..+. ...+..+........|+|||+.|+..++. + .|++.|+.+++..... ....
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-~~g~ 321 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-FHGK 321 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc-cCCC
Confidence 3 44444444 467777877654 33444444334456799999988877643 2 6888999877653322 2111
Q ss_pred cEEEEEECCCCCcEEEEecCCC-----C-CeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecC-CCeEEEEE
Q 011971 335 AVKAIAWSPHLHGLLASGGGTA-----D-RCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYS-QNQIIVWR 407 (474)
Q Consensus 335 ~V~~l~~sp~~~~ll~sg~Gt~-----d-~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~-dg~I~iwd 407 (474)
. ...|+|+|+.++.+..... . ..|.+.|+.++.... +..........|+|||+.++.+.... ...|.+.+
T Consensus 322 ~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 322 N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 1 3489999998888764211 1 368889998886543 33333444688999999988864322 22355555
Q ss_pred CC
Q 011971 408 YP 409 (474)
Q Consensus 408 ~~ 409 (474)
+.
T Consensus 399 l~ 400 (419)
T PRK04043 399 LN 400 (419)
T ss_pred cC
Confidence 53
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.01 E-value=5.2e-07 Score=101.27 Aligned_cols=234 Identities=12% Similarity=0.097 Sum_probs=151.5
Q ss_pred eeeeCCC--CcEEEEE-cCCeEEEEeCCCCCEEEEEec-CC------------CCCEEEEEEcCCCCEEEEEeC-CCcEE
Q 011971 171 NLVDWSS--HNVLAVG-LGNCVYLWNACSSKVTKLCDL-GI------------DDSVCSVGWANRNTHLAVGTS-HGKVQ 233 (474)
Q Consensus 171 ~~l~~s~--~~~la~~-~d~~V~lwd~~~~~~~~~~~~-~~------------~~~V~~v~~sp~g~~la~gs~-dg~I~ 233 (474)
..+++++ ++++.+. .++.|++||... .....+.. +. -.....|++.++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 3456654 3344443 357899999864 43333211 11 123578999998887766654 56799
Q ss_pred EecCCCCeEEEEecCC-----------------CCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeeecC----
Q 011971 234 IWDASRCKRVRTMEGH-----------------RLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSG---- 289 (474)
Q Consensus 234 iwd~~~~~~~~~~~~h-----------------~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~---- 289 (474)
++|..++. +.++.+- -.....+++++ .++++.+.++.|++||...+. +..+.+
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~--v~~~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV--TRVFSGDGYE 726 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe--EEEEecCCcc
Confidence 99987765 3333210 01235678864 466777788999999987654 211111
Q ss_pred -----------cCCCEEEEEEecCCCE-EEEEeCCCcEEEEECCCCcceEEE-------------ccC--------CCcE
Q 011971 290 -----------HKSEVCGLKWSYDNRE-LASGGNDNRLFVWNQHSTQPVLKY-------------CEH--------TAAV 336 (474)
Q Consensus 290 -----------h~~~V~~l~~spd~~~-lasg~~Dg~v~iwd~~~~~~~~~~-------------~~h--------~~~V 336 (474)
.-....+|+++|+++. +++-+.++.|++||+.++...... ..+ -...
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 1134568999999984 555566789999999876432111 000 1124
Q ss_pred EEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC--------------CCeEEEEEcCCCCeEEEEEecCCCe
Q 011971 337 KAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG--------------SQVCNLVWSKNVNELVSTHGYSQNQ 402 (474)
Q Consensus 337 ~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~--------------~~v~~l~~s~~~~~l~~~~g~~dg~ 402 (474)
..++++++|. ++++.. .++.|++||..++........+ .....++++++|+.+++ ...++.
T Consensus 807 ~Gvavd~dG~-LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa--Dt~Nn~ 881 (1057)
T PLN02919 807 LGVLCAKDGQ-IYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA--DTNNSL 881 (1057)
T ss_pred ceeeEeCCCc-EEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE--ECCCCE
Confidence 6889999987 666654 6899999999887765443222 24778999999986666 678899
Q ss_pred EEEEECCCCce
Q 011971 403 IIVWRYPTMSK 413 (474)
Q Consensus 403 I~iwd~~~~~~ 413 (474)
|++||+.+++.
T Consensus 882 Irvid~~~~~~ 892 (1057)
T PLN02919 882 IRYLDLNKGEA 892 (1057)
T ss_pred EEEEECCCCcc
Confidence 99999988754
No 282
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.01 E-value=1.3e-06 Score=82.27 Aligned_cols=216 Identities=13% Similarity=0.115 Sum_probs=145.7
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcce-Eeee-
Q 011971 213 SVGWAN-RNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF-VSKL- 287 (474)
Q Consensus 213 ~v~~sp-~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~-~~~~- 287 (474)
++.|.+ ++.++++-...+.|..|+..+++... +.... ...+++. ...|+.+..++. .++|..+++.. +...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeecc
Confidence 578998 67777777778999999998876543 22222 4555554 467777776554 45588776421 2222
Q ss_pred -cC-cCCCEEEEEEecCCCEEEEEeCC--------CcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCC
Q 011971 288 -SG-HKSEVCGLKWSYDNRELASGGND--------NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTAD 357 (474)
Q Consensus 288 -~~-h~~~V~~l~~spd~~~lasg~~D--------g~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d 357 (474)
.. .....+.+++.++|++.++.... |.|+.++.. ++..... ..-...+.|+|+|+++.|+++.. ..
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds--~~ 155 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADS--FN 155 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEET--TT
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeeccc--cc
Confidence 11 34568899999999977776543 568888877 5533333 34566789999999998888765 68
Q ss_pred CeEEEEECCCCce-------eeeecCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEE
Q 011971 358 RCIRFWNTTTNTH-------LSCMDTG-SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAI 429 (474)
Q Consensus 358 ~~I~iwd~~~~~~-------~~~~~~~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~ 429 (474)
+.|..|++..... ...+... .....+++..+|+..++ ....+.|.+++.. ++.+..+......+++++|
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va--~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA--DWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE--EETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE--EcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 8899999863221 1112222 23788999999988777 6688999999976 8888888766668999999
Q ss_pred -CCCCCEEEEE
Q 011971 430 -SPDGQTIVTG 439 (474)
Q Consensus 430 -spdg~~l~t~ 439 (474)
-++...|+..
T Consensus 233 gg~~~~~L~vT 243 (246)
T PF08450_consen 233 GGPDGKTLYVT 243 (246)
T ss_dssp ESTTSSEEEEE
T ss_pred ECCCCCEEEEE
Confidence 4676665544
No 283
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=8e-07 Score=90.13 Aligned_cols=216 Identities=9% Similarity=0.019 Sum_probs=136.5
Q ss_pred cEEEecCCCCeEEEEecCCCCcEEEEEecC--C-EEEEEeC---CCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCC
Q 011971 231 KVQIWDASRCKRVRTMEGHRLRVGALAWSS--S-LLSSGSR---DKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNR 304 (474)
Q Consensus 231 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~-~l~sgs~---dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~ 304 (474)
.|.+-|..... .+.+.... ......|++ + .++..+. +..|.++|+.+++. ..+....+......|+|||+
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCCC
Confidence 55565554333 33333333 677889984 4 3554333 35689999987662 33333455566788999998
Q ss_pred EEEEEeC---CCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeE
Q 011971 305 ELASGGN---DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVC 381 (474)
Q Consensus 305 ~lasg~~---Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~ 381 (474)
.|+.... +..|+++|+.+++ ...+..+........|+|||+.++.+........|.++|+.+++.......+..
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~-- 322 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN-- 322 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--
Confidence 7765432 3578888988776 344544444445668999999888876421223688889988776444332222
Q ss_pred EEEEcCCCCeEEEEEecCC-------CeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCC-C--cEEEEeCC
Q 011971 382 NLVWSKNVNELVSTHGYSQ-------NQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGD-E--TLRFWNVF 451 (474)
Q Consensus 382 ~l~~s~~~~~l~~~~g~~d-------g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~D-g--~I~iW~l~ 451 (474)
...|+|+|+.++.++...+ ..|.+.|+.++.. ..+... .......|+|||+.|+..+.+ + .|.+.++.
T Consensus 323 ~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 323 NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 3589999999988754321 4788889877754 334432 233458899999988765543 2 36667776
Q ss_pred CCCC
Q 011971 452 PSPK 455 (474)
Q Consensus 452 ~~~~ 455 (474)
...+
T Consensus 401 g~~~ 404 (419)
T PRK04043 401 YNKS 404 (419)
T ss_pred CCee
Confidence 5443
No 284
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.97 E-value=2.9e-07 Score=83.42 Aligned_cols=251 Identities=11% Similarity=0.043 Sum_probs=164.3
Q ss_pred CeEEEEeCCCCC--EEEEEecCCCCCEEEEEEcC-----CCCEEEEEeCCCcEEEecCCCCe-EEEEecCCCCcEEEE--
Q 011971 187 NCVYLWNACSSK--VTKLCDLGIDDSVCSVGWAN-----RNTHLAVGTSHGKVQIWDASRCK-RVRTMEGHRLRVGAL-- 256 (474)
Q Consensus 187 ~~V~lwd~~~~~--~~~~~~~~~~~~V~~v~~sp-----~g~~la~gs~dg~I~iwd~~~~~-~~~~~~~h~~~V~~l-- 256 (474)
..|-+|+.-+.. +++.. +.+.|.| ...+||.|+..|...+|...+.+ .+.....|...|.-+
T Consensus 52 ~sv~i~~~y~N~~~iv~~y--------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 52 ISVPINSHYSNPKGIVEFY--------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred eeeEeccccCCchhhEEee--------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 456677766544 33332 2233443 34589999999999999988654 333344454443322
Q ss_pred -EecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCC--CEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-ceEE--Ec
Q 011971 257 -AWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKS--EVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ-PVLK--YC 330 (474)
Q Consensus 257 -~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~--~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~-~~~~--~~ 330 (474)
+-+..-+..++.|.++++.++..+.. ....|.. .+.++++++|++++++.+....|..|.+.... .+.. ..
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~---~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a 200 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSN---KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA 200 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcc---cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec
Confidence 22334677788888888888765542 1122333 37899999999999999999999999987542 2222 22
Q ss_pred cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee------cCCCCeEEEEEcCCCCe--EEEEEecCCCe
Q 011971 331 EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM------DTGSQVCNLVWSKNVNE--LVSTHGYSQNQ 402 (474)
Q Consensus 331 ~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~------~~~~~v~~l~~s~~~~~--l~~~~g~~dg~ 402 (474)
.....-.+..|+.... .+|++. +||++.|||++........ .+.+.+..+.|++.|.. |+. ...-+.
T Consensus 201 ~t~D~gF~~S~s~~~~-~FAv~~--Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~--sEhfs~ 275 (344)
T KOG4532|consen 201 PTSDHGFYNSFSENDL-QFAVVF--QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI--SEHFSR 275 (344)
T ss_pred ccCCCceeeeeccCcc-eEEEEe--cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEE--ecCcce
Confidence 3344456788887754 666665 9999999999875433222 25677999999986643 333 445678
Q ss_pred EEEEECCCCceeEEEcC-------CCc-cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 403 IIVWRYPTMSKLATLTG-------HTF-RVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 403 I~iwd~~~~~~~~~l~~-------h~~-~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
+.+.|++++.....+.. |.. .|..-.|+.++..+.+..++ .+.=|++....
T Consensus 276 ~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 276 VHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred EEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccccc
Confidence 99999998876554432 332 37778888888777776655 45557765543
No 285
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.97 E-value=1.1e-06 Score=83.03 Aligned_cols=223 Identities=15% Similarity=0.172 Sum_probs=153.8
Q ss_pred CCcEEEecCCCCe-EE--EEecCCCCcEEEEEecC--CEEEEEeCC---CcEEEEECcCC--c-ceEeeecCcCCCEEEE
Q 011971 229 HGKVQIWDASRCK-RV--RTMEGHRLRVGALAWSS--SLLSSGSRD---KSILQRDIRAQ--E-DFVSKLSGHKSEVCGL 297 (474)
Q Consensus 229 dg~I~iwd~~~~~-~~--~~~~~h~~~V~~l~~~~--~~l~sgs~d---g~I~iwd~~~~--~-~~~~~~~~h~~~V~~l 297 (474)
+.-|++|++.+.. .+ ..+-.+...++-|+|++ +.|.++..+ |.|..|.++.. . ..+..........|.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 3569999987432 11 12234677788899985 467777554 77888877653 2 1122222223344899
Q ss_pred EEecCCCEEEEEeC-CCcEEEEECCC-Ccc--eEEEccCCCc----------EEEEEECCCCCcEEEEecCCCCCeEEEE
Q 011971 298 KWSYDNRELASGGN-DNRLFVWNQHS-TQP--VLKYCEHTAA----------VKAIAWSPHLHGLLASGGGTADRCIRFW 363 (474)
Q Consensus 298 ~~spd~~~lasg~~-Dg~v~iwd~~~-~~~--~~~~~~h~~~----------V~~l~~sp~~~~ll~sg~Gt~d~~I~iw 363 (474)
++++++++|+++.. -|.|.++-++. |.. ...+..|.+. +....+.|++++++++.-| -..|.+|
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG--~Dri~~y 172 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG--TDRIFLY 172 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC--CceEEEE
Confidence 99999999888764 67899999865 322 2122245544 8889999999988887654 3458999
Q ss_pred ECCCCceee----eecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC-ceeEEEcCC---------CccEEEEEE
Q 011971 364 NTTTNTHLS----CMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM-SKLATLTGH---------TFRVLYLAI 429 (474)
Q Consensus 364 d~~~~~~~~----~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-~~~~~l~~h---------~~~V~~l~~ 429 (474)
++..|.... .+..+.....|.|+|++++.+++ ..-+++|.+|.+... ..+..++.+ ....-.|.+
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v-~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLV-NELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEE-eccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 999776532 34567889999999999999987 557899999999873 333333321 335678899
Q ss_pred CCCCCEEEEEeC-CCcEEEEeCCCCC
Q 011971 430 SPDGQTIVTGAG-DETLRFWNVFPSP 454 (474)
Q Consensus 430 spdg~~l~t~s~-Dg~I~iW~l~~~~ 454 (474)
++||++|+++.. ...|.++.+....
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~~ 277 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPDG 277 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCC
Confidence 999999987742 3478888887653
No 286
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.97 E-value=2.8e-07 Score=93.22 Aligned_cols=267 Identities=11% Similarity=0.015 Sum_probs=165.9
Q ss_pred CCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEE----------EEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEe
Q 011971 177 SHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVC----------SVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (474)
Q Consensus 177 ~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~----------~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~ 246 (474)
.+.+++.+.++.|+-+|..+|+..-...+.....+. .+.. ++..+++++.+|.+..+|.++++.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 355666667789999999999876655443211110 0111 3567888889999999999999988777
Q ss_pred cCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCE-----EEEEEecCCCEEEEEeCCCcEEEEECC
Q 011971 247 EGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEV-----CGLKWSYDNRELASGGNDNRLFVWNQH 321 (474)
Q Consensus 247 ~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V-----~~l~~spd~~~lasg~~Dg~v~iwd~~ 321 (474)
.............++.++.+..++.|..+|..+++.... .......+ .+... .+..++.++.+|.+..+|..
T Consensus 147 ~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~-~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 147 KVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWT-VNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred cCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeee-ecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEcc
Confidence 644332222333467888889999999999998874322 22111000 11111 23457778889999999999
Q ss_pred CCcceEEEccCCC-------cEEEEEECC--CCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeE
Q 011971 322 STQPVLKYCEHTA-------AVKAIAWSP--HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNEL 392 (474)
Q Consensus 322 ~~~~~~~~~~h~~-------~V~~l~~sp--~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l 392 (474)
+++.+........ ....+..+| .+..+++.+ .++.+..+|..+|+.+........ ..+. ..+..+
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~-~~~~--~~~~~v 297 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA---YNGNLVALDLRSGQIVWKREYGSV-NDFA--VDGGRI 297 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE---cCCeEEEEECCCCCEEEeecCCCc-cCcE--EECCEE
Confidence 9987765432110 011111122 234455544 589999999999988776554332 1121 245566
Q ss_pred EEEEecCCCeEEEEECCCCceeEEEcCCCcc-EEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCC
Q 011971 393 VSTHGYSQNQIIVWRYPTMSKLATLTGHTFR-VLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQN 458 (474)
Q Consensus 393 ~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~ 458 (474)
++ +..++.+..+|..+++.+-....-... .....+ .+..|+.++.||.|++.|..++.....
T Consensus 298 y~--~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 298 YL--VDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred EE--EcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 66 558899999999998876543321111 111222 245788899999999999988765443
No 287
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.96 E-value=1.4e-08 Score=96.65 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=109.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEecCCCCe----EEEEe--cCCCCcEEEEEecCCEEEEE---eCCCcEEEEECcCCc
Q 011971 211 VCSVGWANRNTHLAVGTSHGKVQIWDASRCK----RVRTM--EGHRLRVGALAWSSSLLSSG---SRDKSILQRDIRAQE 281 (474)
Q Consensus 211 V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~----~~~~~--~~h~~~V~~l~~~~~~l~sg---s~dg~I~iwd~~~~~ 281 (474)
+..+..++.+++||++..+....+++..... .+... ......+..+... .....+ +....+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeecc-ceEEEEeecCCceeeeeecccc--
Confidence 3445567778888888877776666654332 22221 1122233333333 223333 3344455555443
Q ss_pred ceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEc-cCCCcEEEEEECCCCCcEEEEecCCCCCeE
Q 011971 282 DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCI 360 (474)
Q Consensus 282 ~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I 360 (474)
.....+.+|-+-++.++|+||+++++++..|..|+|-.....-.+..|. +|...|..++.-++. +|++||| |++|
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~--~LlS~sG--D~tl 217 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY--LLLSGSG--DKTL 217 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc--eeeecCC--CCcE
Confidence 2355667899999999999999999999999999998887665565554 699999999999874 4666653 9999
Q ss_pred EEEECCCCceeeeecC
Q 011971 361 RFWNTTTNTHLSCMDT 376 (474)
Q Consensus 361 ~iwd~~~~~~~~~~~~ 376 (474)
++||+.+|+++.+++.
T Consensus 218 r~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 218 RLWDITSGKLLDTCDL 233 (390)
T ss_pred EEEecccCCcccccch
Confidence 9999999999877653
No 288
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=1.8e-09 Score=105.90 Aligned_cols=207 Identities=17% Similarity=0.273 Sum_probs=154.8
Q ss_pred EEEEecCCCCcEEEEEe--cCCEEEEEeCCCcEEEEECcCCc------ceEeeecCcCCCEEEEEEecCCCEEEEEeCCC
Q 011971 242 RVRTMEGHRLRVGALAW--SSSLLSSGSRDKSILQRDIRAQE------DFVSKLSGHKSEVCGLKWSYDNRELASGGNDN 313 (474)
Q Consensus 242 ~~~~~~~h~~~V~~l~~--~~~~l~sgs~dg~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg 313 (474)
.+..+.||+..|..++- +.+.+++++.|.+|++|.++... .+..++..|+.+|.++.|-.+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 45567899999988875 36899999999999999997643 2566788999999999999998888765 78
Q ss_pred cEEEEECCCCcceEEEcc--CCCcEEEEEECCC-CCcEEEEecCCCCCeEEEEECCCCceeeeecC------CCCeEEEE
Q 011971 314 RLFVWNQHSTQPVLKYCE--HTAAVKAIAWSPH-LHGLLASGGGTADRCIRFWNTTTNTHLSCMDT------GSQVCNLV 384 (474)
Q Consensus 314 ~v~iwd~~~~~~~~~~~~--h~~~V~~l~~sp~-~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~------~~~v~~l~ 384 (474)
-|++||.--++++..... ..+.+..+..-+. ...++..|+ +...+++++|.+.++-..+++. ..-+.+++
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgc-saeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGC-SAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeec-cchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 999999877776653321 2233333433343 334555553 4889999999998876665542 24588999
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEE-EeCCCCC
Q 011971 385 WSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRF-WNVFPSP 454 (474)
Q Consensus 385 ~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~i-W~l~~~~ 454 (474)
..+.|+.+++ +-+.|.|.+.|.++++.+..+..-.-....++- |..+.|+....|.++.+ |....+.
T Consensus 884 Va~~GN~lAa--~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 884 VADKGNKLAA--ALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred eccCcchhhH--HhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCe
Confidence 9999999999 889999999999999998888766555555553 45567777778888888 7655443
No 289
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.95 E-value=4.2e-07 Score=91.94 Aligned_cols=257 Identities=14% Similarity=0.006 Sum_probs=161.0
Q ss_pred CCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEE-EEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcE--
Q 011971 177 SHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCS-VGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRV-- 253 (474)
Q Consensus 177 ~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~-v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V-- 253 (474)
.+.+++++.++.++.+|..+|+..-..... +.+.+ ... .+..+++++.+|.|..+|.++++.+..+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 195 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA--GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL 195 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC--CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence 356666667889999999999987665442 22222 111 24567788889999999999999888775321111
Q ss_pred ---EEEEecCCEEEEEeCCCcEEEEECcCCcceEee-ecCcC--C---CEEEEEEec--CCCEEEEEeCCCcEEEEECCC
Q 011971 254 ---GALAWSSSLLSSGSRDKSILQRDIRAQEDFVSK-LSGHK--S---EVCGLKWSY--DNRELASGGNDNRLFVWNQHS 322 (474)
Q Consensus 254 ---~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~h~--~---~V~~l~~sp--d~~~lasg~~Dg~v~iwd~~~ 322 (474)
.+-....+.++.++.+|.+..+|..+++..... +.... . ....+.-+| .+..++.++.+|.++.+|..+
T Consensus 196 ~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t 275 (394)
T PRK11138 196 RGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS 275 (394)
T ss_pred cCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC
Confidence 111122456778888999999998877632211 10000 0 001111122 345677788899999999999
Q ss_pred CcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-C-CCeEEEEEcCCCCeEEEEEecCC
Q 011971 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-G-SQVCNLVWSKNVNELVSTHGYSQ 400 (474)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~-~-~~v~~l~~s~~~~~l~~~~g~~d 400 (474)
++.+.+.... ....+.. .+..+++.. .++.+..+|..+|+.+..... . ........ .+..+++ +..+
T Consensus 276 G~~~W~~~~~--~~~~~~~--~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v--~~~~ 344 (394)
T PRK11138 276 GQIVWKREYG--SVNDFAV--DGGRIYLVD---QNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVV--GDSE 344 (394)
T ss_pred CCEEEeecCC--CccCcEE--ECCEEEEEc---CCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEE--EeCC
Confidence 9877665321 1112222 234455543 689999999999987665432 1 11122222 2556666 6789
Q ss_pred CeEEEEECCCCceeEEEcCCCccEEE-EEECCCCCEEEEEeCCCcEEEEeC
Q 011971 401 NQIIVWRYPTMSKLATLTGHTFRVLY-LAISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 401 g~I~iwd~~~~~~~~~l~~h~~~V~~-l~~spdg~~l~t~s~Dg~I~iW~l 450 (474)
|.|.++|..+++.+.........+.. ..+ .+..|+.++.||.|+.+++
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 99999999999988877644333322 122 3447888999999998765
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.94 E-value=2e-08 Score=95.66 Aligned_cols=160 Identities=15% Similarity=0.195 Sum_probs=120.3
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCcc----eEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce
Q 011971 295 CGLKWSYDNRELASGGNDNRLFVWNQHSTQP----VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370 (474)
Q Consensus 295 ~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~----~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~ 370 (474)
..+..++++++||++..+....++++..... .... .-...-.++.+..+....++.-.......+.+|....+.+
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 3445677889999998888888888765432 2222 1222334555555544454443212566777888777888
Q ss_pred eeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEc-CCCccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 011971 371 LSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLT-GHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449 (474)
Q Consensus 371 ~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~ 449 (474)
...+.|-+.+..++|+||++++++ ...|..|+|-.++.-..+..+. ||+.-|..++.-++ +.|++||+|++|++||
T Consensus 145 ~~~lGhvSml~dVavS~D~~~Iit--aDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIIT--ADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD 221 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEE--ecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence 888888999999999999999999 7899999999998877776665 79999999999865 5699999999999999
Q ss_pred CCCCCCCCC
Q 011971 450 VFPSPKSQN 458 (474)
Q Consensus 450 l~~~~~~~~ 458 (474)
+..+.....
T Consensus 222 ~~sgk~L~t 230 (390)
T KOG3914|consen 222 ITSGKLLDT 230 (390)
T ss_pred cccCCcccc
Confidence 999876643
No 291
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.94 E-value=2.1e-08 Score=92.31 Aligned_cols=241 Identities=15% Similarity=0.287 Sum_probs=169.4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe-----EEEEecCCC------------CcEEEEEec----CCEEE
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK-----RVRTMEGHR------------LRVGALAWS----SSLLS 264 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~-----~~~~~~~h~------------~~V~~l~~~----~~~l~ 264 (474)
...+.|+++.|...|.||++|...|.|.+|.-+... ....+++|. ..|..+.|- -+.++
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 446789999999999999999999999999765432 223355554 357788885 25788
Q ss_pred EEeCCCcEEEEECcCCcc-----------------------------------------eEe-eecCcCCCEEEEEEecC
Q 011971 265 SGSRDKSILQRDIRAQED-----------------------------------------FVS-KLSGHKSEVCGLKWSYD 302 (474)
Q Consensus 265 sgs~dg~I~iwd~~~~~~-----------------------------------------~~~-~~~~h~~~V~~l~~spd 302 (474)
..+.|.+|++|.+..... +.. ....|.-.|.++.|+.|
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 888999999998864310 000 11357777889999998
Q ss_pred CCEEEEEeCCCcEEEEECCCCcc---eEEEccCC-----CcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce----
Q 011971 303 NRELASGGNDNRLFVWNQHSTQP---VLKYCEHT-----AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH---- 370 (474)
Q Consensus 303 ~~~lasg~~Dg~v~iwd~~~~~~---~~~~~~h~-----~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~---- 370 (474)
...++++ .|=.|.+|++.-... +..++.|. ..|++..|+|....++.-.+ ..|.|++-|++....
T Consensus 184 ~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs--SkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 184 KETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS--SKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred hheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec--CCCcEEehhhhhhhhccCc
Confidence 8888776 457899999864322 23333443 45788999998766665554 689999999984321
Q ss_pred --eee--ec---------CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceeEEEcCCC------------ccE
Q 011971 371 --LSC--MD---------TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT-MSKLATLTGHT------------FRV 424 (474)
Q Consensus 371 --~~~--~~---------~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~~~~~~l~~h~------------~~V 424 (474)
+.. ++ .-+.|..+.|+++|+++++ . .-.+|+|||... ..++.++.-|. ..|
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls--R-dyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai 337 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS--R-DYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI 337 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE--e-ccceEEEEecccccCCceeechHHHHHHHHHhhhhccce
Confidence 111 11 1246888999999999997 2 457899999974 34566665442 223
Q ss_pred ---EEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 425 ---LYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 425 ---~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
..+.||.|...+++|+.....-|+-+..
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred eeeEEEEecCCcccccccccccceeeecccc
Confidence 3578898999999998888877777443
No 292
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=6.6e-09 Score=102.07 Aligned_cols=242 Identities=14% Similarity=0.199 Sum_probs=159.3
Q ss_pred EEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCC-------CeEEEEecCCCCcEEEEEecCCEEEEEeCCCc
Q 011971 200 TKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASR-------CKRVRTMEGHRLRVGALAWSSSLLSSGSRDKS 271 (474)
Q Consensus 200 ~~~~~~-~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~-------~~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~ 271 (474)
+.++.+ +|...|..++-..+.+-+++++.|.+|++|.+.. ..+..+++.|..+|.++.|-.+.-..++.||.
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~g 805 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGG 805 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCc
Confidence 344433 8888999988777778899999999999999752 34677888999999999998777677788999
Q ss_pred EEEEECcCCcceEeeecC-cCCCEEEEEEec--CCCEEEEE-eCCCcEEEEECCCCcceEEEc-----cCCCcEEEEEEC
Q 011971 272 ILQRDIRAQEDFVSKLSG-HKSEVCGLKWSY--DNRELASG-GNDNRLFVWNQHSTQPVLKYC-----EHTAAVKAIAWS 342 (474)
Q Consensus 272 I~iwd~~~~~~~~~~~~~-h~~~V~~l~~sp--d~~~lasg-~~Dg~v~iwd~~~~~~~~~~~-----~h~~~V~~l~~s 342 (474)
|.+||.-.+....+.... ..+.+..+..-+ +...++.| +...+|+++|.+..+....++ +..+-+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 999997655422211111 122233333333 33344444 678899999999887766654 345678999999
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-CCCeEEEEEcCCCCeEEEEEecCCCeEEE-EECCCCceeEEEcCC
Q 011971 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-GSQVCNLVWSKNVNELVSTHGYSQNQIIV-WRYPTMSKLATLTGH 420 (474)
Q Consensus 343 p~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~i-wd~~~~~~~~~l~~h 420 (474)
+.|+.+.+.- ..|+|.+.|.++|+.+..+.. ......++ .|..+.|+. ...|..+.| |..-.+......+..
T Consensus 886 ~~GN~lAa~L---SnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~--saldHslaVnWhaldgimh~q~kpp 959 (1034)
T KOG4190|consen 886 DKGNKLAAAL---SNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQ--SALDHSLAVNWHALDGIMHLQDKPP 959 (1034)
T ss_pred cCcchhhHHh---cCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHh--hcccceeEeeehhcCCeeeeccCCC
Confidence 9998776643 699999999999998876642 22222222 344555555 446677777 766555444443332
Q ss_pred CccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 011971 421 TFRVLYLAISPDGQTIVTGAGDETLRFWN 449 (474)
Q Consensus 421 ~~~V~~l~~spdg~~l~t~s~Dg~I~iW~ 449 (474)
..+..-+ -.-|..|+++.....+.+|.
T Consensus 960 pepahfl--qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 960 PEPAHFL--QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred Ccchhhh--hccCceeEEeccCcEEEEEe
Confidence 2221111 11355667666666666664
No 293
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=9e-08 Score=91.16 Aligned_cols=254 Identities=15% Similarity=0.117 Sum_probs=165.3
Q ss_pred EEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec---CCEEE
Q 011971 189 VYLWNACSSKVTKLCDLGIDDSVCSVGWANRNT-HLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS---SSLLS 264 (474)
Q Consensus 189 V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~-~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~---~~~l~ 264 (474)
|++.+..+-+..+.+ .++...|..++|+|..+ ++..++.+..|.|.|+++...+..+..+ ..+++++|+ .+++.
T Consensus 175 v~~l~~~~fkssq~l-p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQIL-PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcc-cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeE
Confidence 777776666655544 36778999999999877 7888899999999999999999888877 889999997 48999
Q ss_pred EEeCCCcEEEEECcCCcceEeeecC--cCCCEEEEEEe------cCCCEEEEEeCCCcEEEEECCC--CcceEEEc-cCC
Q 011971 265 SGSRDKSILQRDIRAQEDFVSKLSG--HKSEVCGLKWS------YDNRELASGGNDNRLFVWNQHS--TQPVLKYC-EHT 333 (474)
Q Consensus 265 sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~s------pd~~~lasg~~Dg~v~iwd~~~--~~~~~~~~-~h~ 333 (474)
.|...|.|.+||++..+..+..+.+ ...+|..++.- +.|.+|+....+ +..|++.. +.....+. +..
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~p 330 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPP 330 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCC
Confidence 9999999999999988755544443 23445554432 234445544432 45555432 22222221 346
Q ss_pred CcEEEEEECCCCCcEEEEecCCCC------CeEEE-EECCCCceeeeec---CCCC-----eEEEEE-cCCCCeEEEEEe
Q 011971 334 AAVKAIAWSPHLHGLLASGGGTAD------RCIRF-WNTTTNTHLSCMD---TGSQ-----VCNLVW-SKNVNELVSTHG 397 (474)
Q Consensus 334 ~~V~~l~~sp~~~~ll~sg~Gt~d------~~I~i-wd~~~~~~~~~~~---~~~~-----v~~l~~-s~~~~~l~~~~g 397 (474)
+...++++++-.+.++++.- .+ +.|-. -|-.+|..+-... .++. -....+ .++.++++.. |
T Consensus 331 G~cismqy~~~snh~l~tyR--s~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~-g 407 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYR--SNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV-G 407 (463)
T ss_pred cceeeeeecCccceEEEEec--CCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEe-c
Confidence 67778888887788888753 11 11111 1222333322111 0111 111222 3445555554 7
Q ss_pred cCCCeEEEEECCCCceeEEEcCCCccEEEEEECC-CC-CEEEEEeCCCcEEEEeCC
Q 011971 398 YSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISP-DG-QTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 398 ~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg-~~l~t~s~Dg~I~iW~l~ 451 (474)
.+.+++.+||..+++.+.++.-. .+|.+++... +| .+|++- .|..++|+...
T Consensus 408 d~tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 408 DSTNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred CCcceeEEeccchhheeeecccC-cceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 78999999999999999988644 7788877654 33 366655 45578888754
No 294
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.88 E-value=3.7e-07 Score=82.69 Aligned_cols=212 Identities=13% Similarity=0.085 Sum_probs=141.7
Q ss_pred cEEEEE-cCCeEEEEeCCCCCEE-EEEecCCCCCEEEEEEcCC-CCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEE
Q 011971 179 NVLAVG-LGNCVYLWNACSSKVT-KLCDLGIDDSVCSVGWANR-NTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGA 255 (474)
Q Consensus 179 ~~la~~-~d~~V~lwd~~~~~~~-~~~~~~~~~~V~~v~~sp~-g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~ 255 (474)
.+||.| ..|...+|...+.+.. ++++ .+...|+-+.=..+ .--+..++.|.++++.+++-+.....+....-.+.+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd-~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCD-VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeec-ccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 345554 6789999999876653 4443 33443333222112 234667888999999888755433333222233777
Q ss_pred EEec--CCEEEEEeCCCcEEEEECcCCcceEee--ecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEE---
Q 011971 256 LAWS--SSLLSSGSRDKSILQRDIRAQEDFVSK--LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK--- 328 (474)
Q Consensus 256 l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~--~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~--- 328 (474)
++++ +..+++.+....|..|.+......+.. .......=-+..|+.....+|++..||++.|||++.......
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 7776 579999999999999999876644333 233344456778999999999999999999999987543322
Q ss_pred --EccCCCcEEEEEECCCCC--cEEEEecCCCCCeEEEEECCCCceeeeec--------CCCC-eEEEEEcCCCCeEEE
Q 011971 329 --YCEHTAAVKAIAWSPHLH--GLLASGGGTADRCIRFWNTTTNTHLSCMD--------TGSQ-VCNLVWSKNVNELVS 394 (474)
Q Consensus 329 --~~~h~~~V~~l~~sp~~~--~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~--------~~~~-v~~l~~s~~~~~l~~ 394 (474)
-..|.+++..+.|++.|. .|+.+- .-+.+.+.|++++...+.+. +..+ +..-.|+.++..+.+
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v 319 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDV 319 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEec---CcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccc
Confidence 235899999999998664 344543 36789999999987655443 2233 666667766665555
No 295
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.84 E-value=1.5e-06 Score=81.16 Aligned_cols=215 Identities=12% Similarity=0.085 Sum_probs=136.2
Q ss_pred CCcEEEecCCCCeEEEEecC---CCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCE
Q 011971 229 HGKVQIWDASRCKRVRTMEG---HRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRE 305 (474)
Q Consensus 229 dg~I~iwd~~~~~~~~~~~~---h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~ 305 (474)
+|.|..||..+++.+....- ....+......++.+++++.++.|..||..+++.. -.... ...+.... ..++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~-W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVL-WRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEE-EEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEE-EEeec-ccccccee-eecccc
Confidence 68999999999999888753 23333223336788888899999999999888743 22222 11111111 234557
Q ss_pred EEEEeCCCcEEEEECCCCcceEEE-ccCC---CcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCC--
Q 011971 306 LASGGNDNRLFVWNQHSTQPVLKY-CEHT---AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQ-- 379 (474)
Q Consensus 306 lasg~~Dg~v~iwd~~~~~~~~~~-~~h~---~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~-- 379 (474)
++++..++.|+.+|..+++.+... .... ...........+..+++.. .++.|..+|..+|+.+........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT---SSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE---TCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe---ccCcEEEEecCCCcEEEEeecCCCCC
Confidence 777778899999999999998884 3221 1111222222255555544 589999999999999877764321
Q ss_pred ---------eEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 011971 380 ---------VCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 380 ---------v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l 450 (474)
+..-....++ .+++ ...++.+..+|+.+++.+.... ...+..+ ...++..|+.++.++.|..||+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~--~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYV--SSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEE--ECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEET
T ss_pred CcceeeecccccceEEECC-EEEE--EcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEEC
Confidence 1122222344 5555 4456644444999998765333 2223321 3457778888889999999999
Q ss_pred CCCCC
Q 011971 451 FPSPK 455 (474)
Q Consensus 451 ~~~~~ 455 (474)
.++..
T Consensus 230 ~tG~~ 234 (238)
T PF13360_consen 230 KTGKV 234 (238)
T ss_dssp TTTEE
T ss_pred CCCCE
Confidence 88754
No 296
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.84 E-value=7e-06 Score=90.72 Aligned_cols=239 Identities=15% Similarity=0.236 Sum_probs=152.1
Q ss_pred CCEEEEEEcCCCCEEEEEeC---C---CcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeC---CCcEEEEEC
Q 011971 209 DSVCSVGWANRNTHLAVGTS---H---GKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSR---DKSILQRDI 277 (474)
Q Consensus 209 ~~V~~v~~sp~g~~la~gs~---d---g~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~---dg~I~iwd~ 277 (474)
+.-..|+|-.||.++|+.+- . ..|+||+-+ |.+..+-+.-.+--.+++|. ++++++.-. ...|.+|.-
T Consensus 210 d~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr 288 (928)
T PF04762_consen 210 DGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER 288 (928)
T ss_pred CCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec
Confidence 35568999999999999875 3 469999966 66555555444445678996 467777654 345666664
Q ss_pred cCCcc--eEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcc--eEEEc-cCCCcEEEEEECCCCCcEEEEe
Q 011971 278 RAQED--FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP--VLKYC-EHTAAVKAIAWSPHLHGLLASG 352 (474)
Q Consensus 278 ~~~~~--~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~--~~~~~-~h~~~V~~l~~sp~~~~ll~sg 352 (474)
+.-.+ +...+......|..|.|++|+..||....|. |.+|-..+..- .+.+. .....+..+.|+|....-+...
T Consensus 289 NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~ 367 (928)
T PF04762_consen 289 NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVL 367 (928)
T ss_pred CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEE
Confidence 43322 2222234567899999999999999987655 99999877532 22222 1233455599999766544444
Q ss_pred cCCCCCeEEEEE----CCCC----------------c----------------eeeeecCCCCeEEEEEcCCCCeEEEEE
Q 011971 353 GGTADRCIRFWN----TTTN----------------T----------------HLSCMDTGSQVCNLVWSKNVNELVSTH 396 (474)
Q Consensus 353 ~Gt~d~~I~iwd----~~~~----------------~----------------~~~~~~~~~~v~~l~~s~~~~~l~~~~ 396 (474)
. .++.+..++ +..+ . ....+...+.|..++|++++..+++
T Consensus 368 t--~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~av-- 443 (928)
T PF04762_consen 368 T--SNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAV-- 443 (928)
T ss_pred e--cCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEE--
Confidence 3 335544333 2211 1 1123345678999999999987777
Q ss_pred ecCCCeEEEEECCCCce--------eEEEc----------CCCccEEEEEECCCCCEEEEEeCC---CcEEEEeCCCC
Q 011971 397 GYSQNQIIVWRYPTMSK--------LATLT----------GHTFRVLYLAISPDGQTIVTGAGD---ETLRFWNVFPS 453 (474)
Q Consensus 397 g~~dg~I~iwd~~~~~~--------~~~l~----------~h~~~V~~l~~spdg~~l~t~s~D---g~I~iW~l~~~ 453 (474)
-..||.|.+|....... ...+. .....+..++|..+...++....+ ..+.++++...
T Consensus 444 l~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 521 (928)
T PF04762_consen 444 LTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDS 521 (928)
T ss_pred EECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccC
Confidence 45899999998543211 11111 123457888998877766666554 67888888543
No 297
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.84 E-value=1.2e-05 Score=75.64 Aligned_cols=212 Identities=15% Similarity=0.157 Sum_probs=140.1
Q ss_pred eeeCCC--CcEEEEEc-CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEecCCCCeEEEEec
Q 011971 172 LVDWSS--HNVLAVGL-GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWA-NRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (474)
Q Consensus 172 ~l~~s~--~~~la~~~-d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~s-p~g~~la~gs~dg~I~iwd~~~~~~~~~~~ 247 (474)
.+.|.+ +.++.+.. .+.|+.|+..+++... +... . ...+.+. +++ .|+++... .+.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~--~-~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP--G-PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS--S-EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC--C-CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEee
Confidence 456775 56666664 6799999998876644 3332 2 7777777 565 55555554 45666988886544433
Q ss_pred C-----CCCcEEEEEecC--CEEEEEeCC--------CcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEE-EEeC
Q 011971 248 G-----HRLRVGALAWSS--SLLSSGSRD--------KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELA-SGGN 311 (474)
Q Consensus 248 ~-----h~~~V~~l~~~~--~~l~sgs~d--------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~la-sg~~ 311 (474)
. .....+.+++.+ ++.++.... |.|..++.. .+ +..+...-...++|+|+|+++.|+ +-+.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecCcccccceEECCcchheeecccc
Confidence 2 456788899974 555554433 457777766 33 333333456679999999998765 5567
Q ss_pred CCcEEEEECCCCcc-------eEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-CCeEEE
Q 011971 312 DNRLFVWNQHSTQP-------VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG-SQVCNL 383 (474)
Q Consensus 312 Dg~v~iwd~~~~~~-------~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~-~~v~~l 383 (474)
.+.|..+++..... ...+....+..-.+++..+|+ |+++.. ..+.|.++|.. |+.+..+... ..++++
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~--~~~~I~~~~p~-G~~~~~i~~p~~~~t~~ 230 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADW--GGGRIVVFDPD-GKLLREIELPVPRPTNC 230 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEE--TTTEEEEEETT-SCEEEEEE-SSSSEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEc--CCCEEEEECCC-ccEEEEEcCCCCCEEEE
Confidence 88899999863221 122222233578999999987 555543 47899999987 8888888766 689999
Q ss_pred EEc-CCCCeEEEEE
Q 011971 384 VWS-KNVNELVSTH 396 (474)
Q Consensus 384 ~~s-~~~~~l~~~~ 396 (474)
+|. ++.+.|++++
T Consensus 231 ~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 231 AFGGPDGKTLYVTT 244 (246)
T ss_dssp EEESTTSSEEEEEE
T ss_pred EEECCCCCEEEEEe
Confidence 994 6778787754
No 298
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=2e-09 Score=110.90 Aligned_cols=194 Identities=18% Similarity=0.254 Sum_probs=146.2
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCE-EEEEeCCC-cEEEEECcCCc
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSL-LSSGSRDK-SILQRDIRAQE 281 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~-l~sgs~dg-~I~iwd~~~~~ 281 (474)
.++...+|++|+-+.++|++|+..|.|++|++.+|.......+|..+|+-+.-+ +.. |.+++... ...+|++....
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 567889999999999999999999999999999999999999999999999876 444 44444444 57889987644
Q ss_pred ceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEE-cc---CCCcEEEEEECCCCCcEEEEecCCCC
Q 011971 282 DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKY-CE---HTAAVKAIAWSPHLHGLLASGGGTAD 357 (474)
Q Consensus 282 ~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~-~~---h~~~V~~l~~sp~~~~ll~sg~Gt~d 357 (474)
.....+. +-.+++|+.....-+.|.......+||+.++.++.++ .+ ....-++..|+|+.. |+. .|
T Consensus 1179 ~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~-LIl-----nd 1248 (1516)
T KOG1832|consen 1179 GPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT-LIL-----ND 1248 (1516)
T ss_pred Ccccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-eEe-----eC
Confidence 4444443 3467888876666666777678999999999877663 21 222337788999976 555 46
Q ss_pred CeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEc
Q 011971 358 RCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLT 418 (474)
Q Consensus 358 ~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~ 418 (474)
|. +||.+..+.++.++.-..-..-.|+|+|..++. . -.|||+++.+.+....
T Consensus 1249 Gv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVII--N-----SEIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1249 GV--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVII--N-----SEIWDMRTFKLLHSVP 1300 (1516)
T ss_pred ce--eeeeccHHHHhhhhhheecccccccCCCceEEe--e-----chhhhhHHHHHHhcCc
Confidence 64 799998888877764444444569999999998 3 3589999887766544
No 299
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.80 E-value=1.9e-07 Score=87.35 Aligned_cols=208 Identities=19% Similarity=0.246 Sum_probs=152.8
Q ss_pred eEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEe-eecCcCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 011971 241 KRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVS-KLSGHKSEVCGLKWSYDNRELASGGNDNRLFV 317 (474)
Q Consensus 241 ~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~i 317 (474)
..++.++||...|++...- ..-+++.+.|.++++|--+...+... .......+++++.+.++...|++|-..|++.-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 3456678888888876665 36899999999999997665443322 23345678999999999999999999999998
Q ss_pred EECC----CCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEE
Q 011971 318 WNQH----STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELV 393 (474)
Q Consensus 318 wd~~----~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~ 393 (474)
+.+. ....+.....|...|.++-|+-....++.+| .|..+.---.+.+..+..+........+.+.-. +..
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~---~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTG---KDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAF 169 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEec---cccceEEEeeccCCcccceEeeccCCCCceeeE--EEE
Confidence 8764 3344555668999999999998777666665 687776555555555544433333222222222 333
Q ss_pred EEEecCCCeEEEEECC--CCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCC
Q 011971 394 STHGYSQNQIIVWRYP--TMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 394 ~~~g~~dg~I~iwd~~--~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
+ |...|+|.+..+. ....+.++.+|.+.+.+++|.+....|++|..|..+.+||+...+.
T Consensus 170 v--Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g 231 (404)
T KOG1409|consen 170 V--GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG 231 (404)
T ss_pred e--cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc
Confidence 4 7777777776653 5567889999999999999999999999999999999999987654
No 300
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.79 E-value=2.2e-06 Score=92.11 Aligned_cols=274 Identities=12% Similarity=0.176 Sum_probs=152.3
Q ss_pred ceeeeeCCC--CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEe
Q 011971 169 YLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM 246 (474)
Q Consensus 169 ~v~~l~~s~--~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~ 246 (474)
.+..+.+-. ..++.+..+|.|.+-|.++......-. -.+.|.+++|+||+..++..+..+++.+-. .+...+...
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~--vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E~ 146 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN--VDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAEK 146 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceeeeee--ccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhcc
Confidence 366666654 456666678888888988877655442 367899999999999999999887776543 222222111
Q ss_pred c-----CCCCcEEEEEecC-CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEE-----eCCCcE
Q 011971 247 E-----GHRLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASG-----GNDNRL 315 (474)
Q Consensus 247 ~-----~h~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg-----~~Dg~v 315 (474)
. ...+..-.+-|.. ..-+-|+. |.....+.............+ +.=+.|.|-.||.++|+. .....|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~-gr~~~~~~~~~ek~~~~~~~~-~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSE-GRQAARQKIEKEKALEQIEQD-DHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccceecccccceeeecch-hhhcccccccccccccchhhc-cCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 1 1112222333321 11111111 111111111111111111111 122468899999999983 233789
Q ss_pred EEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee----eecCCC-CeEEEEEcCCCC
Q 011971 316 FVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS----CMDTGS-QVCNLVWSKNVN 390 (474)
Q Consensus 316 ~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~----~~~~~~-~v~~l~~s~~~~ 390 (474)
+|||-+ +..-..-....+--.+++|-|.|..+.+...-+.|+.|.+|.-+ |-.-. .+.... .+..++|+.++.
T Consensus 225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred EEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecCCCC
Confidence 999977 43322222223334689999998866666665677889999743 32222 222222 389999999999
Q ss_pred eEEEEEecCCCe-EEEEECCCCce--eEEEcCCCccEEEEEECCC-CCEEEEEeCCCcEEEEeCC
Q 011971 391 ELVSTHGYSQNQ-IIVWRYPTMSK--LATLTGHTFRVLYLAISPD-GQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 391 ~l~~~~g~~dg~-I~iwd~~~~~~--~~~l~~h~~~V~~l~~spd-g~~l~t~s~Dg~I~iW~l~ 451 (474)
.|++......+. |++|-+.+..- .+.+.-..... +.|+|. ...|..-..+|...++++.
T Consensus 303 iLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred ceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence 999865555555 99999876432 22222211111 666662 2233333355555444443
No 301
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.78 E-value=6.3e-08 Score=98.37 Aligned_cols=237 Identities=17% Similarity=0.280 Sum_probs=162.2
Q ss_pred eeeeeCCC---CcEEEEE-cCCeEEEEeCC--CCCEEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEecCCCCe-
Q 011971 170 LNLVDWSS---HNVLAVG-LGNCVYLWNAC--SSKVTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRCK- 241 (474)
Q Consensus 170 v~~l~~s~---~~~la~~-~d~~V~lwd~~--~~~~~~~~~~~~~~~V~~v~~sp~g-~~la~gs~dg~I~iwd~~~~~- 241 (474)
+..+.|++ ..+-+++ ....-.+|++. +.+.+.....+|...|+.+.|.+.. ..|++++-|-.|..||+.+..
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~ 149 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR 149 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc
Confidence 45567776 3344444 45577789875 3445555555999999999999865 589999999999999998754
Q ss_pred EEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec-CCCEEEEEeCCCcEEEE
Q 011971 242 RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVW 318 (474)
Q Consensus 242 ~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~lasg~~Dg~v~iw 318 (474)
.+.....-..+...++|+ ...+.+.+....|.+||.+.+..++..+++|...|.+++|+. -...+.+.++|++|+.|
T Consensus 150 p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 150 PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred ceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence 455555555667889998 344555667788999999999988999999999999999875 34578899999999999
Q ss_pred ECCCCc--ceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCC----------Cceeeeec-CCCCeEEEEE
Q 011971 319 NQHSTQ--PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT----------NTHLSCMD-TGSQVCNLVW 385 (474)
Q Consensus 319 d~~~~~--~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~----------~~~~~~~~-~~~~v~~l~~ 385 (474)
|..... ..+.. ....+|..-.+-|.|...++--.- -+..+.+++.++ .+.+..+. |...|....|
T Consensus 230 ~y~kSt~e~~~~v-tt~~piw~~r~~Pfg~g~~~mp~~-G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlW 307 (1081)
T KOG0309|consen 230 DYSKSTTESKRTV-TTNFPIWRGRYLPFGEGYCIMPMV-GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLW 307 (1081)
T ss_pred cccccccccceec-cccCcceeccccccCceeEecccc-CCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhh
Confidence 987542 22222 345677777888877654443210 022344443332 23455554 4445666666
Q ss_pred cCCC--------C--eEEEEEecCCCeEEEEECCC
Q 011971 386 SKNV--------N--ELVSTHGYSQNQIIVWRYPT 410 (474)
Q Consensus 386 s~~~--------~--~l~~~~g~~dg~I~iwd~~~ 410 (474)
-..+ + .|++ -+.|..+++|-+.+
T Consensus 308 R~r~e~~~d~d~rdfQLVT--WSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 308 RKRKECDGDYDSRDFQLVT--WSKDQTLRLWPIDS 340 (1081)
T ss_pred hhcccccCCCCccceeEEE--eecCCceEeeeccH
Confidence 4432 2 3444 77999999998753
No 302
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.76 E-value=1.9e-07 Score=97.07 Aligned_cols=182 Identities=17% Similarity=0.201 Sum_probs=144.7
Q ss_pred CCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEE
Q 011971 219 RNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLK 298 (474)
Q Consensus 219 ~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 298 (474)
++..++.|+....+..+|+.+.+..+...-....|.-|..++..+.+|...|+|.+.|.++.+ .+.++..|.+.|..+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGSISDFD 224 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCc-eeeeeeccccceeeee
Confidence 455677787778899999999998888876666799999999999999999999999999887 6899999999998766
Q ss_pred EecCCCEEEEEeC---------CCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECC---
Q 011971 299 WSYDNRELASGGN---------DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT--- 366 (474)
Q Consensus 299 ~spd~~~lasg~~---------Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~--- 366 (474)
. .|+.|+++|. |.-|+|||++..+.+.-+.-+.++ .-+.|+|.-...++..+ ..|...+-|..
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S--~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTS--QSGQFQFVDTATLS 299 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEe--cccceeeccccccC
Confidence 5 6889999885 556899999988766555444443 56778887665555554 68899998833
Q ss_pred CC--ceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011971 367 TN--THLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (474)
Q Consensus 367 ~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 408 (474)
+. ........++.+..+.++++++.++. |..+|.|.+|.-
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alaf--gd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAF--GDHEGHVNLWAD 341 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEE--ecccCcEeeecC
Confidence 22 12223335667999999999999999 999999999983
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.74 E-value=3.7e-07 Score=95.04 Aligned_cols=190 Identities=15% Similarity=0.241 Sum_probs=139.4
Q ss_pred cCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEE
Q 011971 259 SSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKA 338 (474)
Q Consensus 259 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~ 338 (474)
+++.++.|+....+..+|+++... .....-..+.|.-+. .+++.+.+|...|+|.+-|.++.+.++++..|.+.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e-~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKE-TRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeeccccee-eeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 467889999999999999988763 333322333455444 47889999999999999999999999999999999987
Q ss_pred EEECCCCCcEEEEec------CCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC---
Q 011971 339 IAWSPHLHGLLASGG------GTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYP--- 409 (474)
Q Consensus 339 l~~sp~~~~ll~sg~------Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~--- 409 (474)
+... |+.|+++|- -..|..|++||+++.+.+.-+.......-+.|.|.-..-+++ .+..|+..+-|..
T Consensus 223 fDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V-~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 223 FDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAV-TSQSGQFQFVDTATLS 299 (1118)
T ss_pred eecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEE-EecccceeeccccccC
Confidence 7665 554444432 024778999999998888877766666677788865543333 4577888888832
Q ss_pred CC-ceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 410 TM-SKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 410 ~~-~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
+. ..+..+......+..+.+|++|+.|+.|..+|.|.+|.-.+.+
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~~P 345 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRPQP 345 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCCCC
Confidence 22 2223333445569999999999999999999999999844433
No 304
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.72 E-value=3.6e-07 Score=82.43 Aligned_cols=231 Identities=15% Similarity=0.230 Sum_probs=138.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec--CCCCcEEEEEe------------cCCEEEEEeCCCcEEEEE
Q 011971 211 VCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME--GHRLRVGALAW------------SSSLLSSGSRDKSILQRD 276 (474)
Q Consensus 211 V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~--~h~~~V~~l~~------------~~~~l~sgs~dg~I~iwd 276 (474)
|+.+.++-+ ..|+++..++.+..+...++.+....+ ...++..+++. -++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 666666643 357777777777666554444333222 11223333333 246899999999999999
Q ss_pred CcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC-----CCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEE
Q 011971 277 IRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-----DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLAS 351 (474)
Q Consensus 277 ~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~-----Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~s 351 (474)
.+........+..-...--+.+....++.+.+++- -+..++|+++..+....-......|.+++-+|.+..++++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~c 197 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCC 197 (319)
T ss_pred chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEE
Confidence 87632222222111111122223334445544332 2346677766443322222233459999999999999999
Q ss_pred ecCCCCCeEEEEECCCCceeeee--cCCCCeEEEEEcC-CCCeEEEEEecCCCeEEEEECCCCceeE-------------
Q 011971 352 GGGTADRCIRFWNTTTNTHLSCM--DTGSQVCNLVWSK-NVNELVSTHGYSQNQIIVWRYPTMSKLA------------- 415 (474)
Q Consensus 352 g~Gt~d~~I~iwd~~~~~~~~~~--~~~~~v~~l~~s~-~~~~l~~~~g~~dg~I~iwd~~~~~~~~------------- 415 (474)
|+ .||.+-+||.+.......+ .+...+..+-|+| ++..|++ .++||.+.-||-.+ +.+.
T Consensus 198 gt--~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft--~sedGslw~wdas~-~~l~i~~~~s~~s~WLs 272 (319)
T KOG4714|consen 198 GT--DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFT--CSEDGSLWHWDAST-TFLSISNQASVISSWLS 272 (319)
T ss_pred ec--CCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeE--ecCCCcEEEEcCCC-ceEEecCcccccccccc
Confidence 76 8999999999987543332 2678899999998 5567777 67999999999763 1111
Q ss_pred -----E---EcC----CCccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 011971 416 -----T---LTG----HTFRVLYLAISPDGQTIVTGAGDETLRFWN 449 (474)
Q Consensus 416 -----~---l~~----h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~ 449 (474)
. +.+ -...|..+.. -|..|++|+.-+.|++.+
T Consensus 273 gD~v~s~i~i~~ll~~~~~SinsfDV--~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 273 GDPVKSRIEITSLLPSRSLSINSFDV--LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred CCcccceEeeeccccccceeeeeeec--cCceEEeccccceEEEec
Confidence 0 000 0112222222 577899999889998875
No 305
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.70 E-value=5e-05 Score=70.08 Aligned_cols=233 Identities=14% Similarity=0.140 Sum_probs=131.8
Q ss_pred EEEcCCCCEEEEEeCCCcEEEecCCCC--eEEE---EecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEe-
Q 011971 214 VGWANRNTHLAVGTSHGKVQIWDASRC--KRVR---TMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVS- 285 (474)
Q Consensus 214 v~~sp~g~~la~gs~dg~I~iwd~~~~--~~~~---~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~- 285 (474)
++.+.+|+.||+-- |..|.|-...+. ..+. .-+.....=..++|++ .+|+.+...|+|.++|+....-...
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 56678898888764 567777655432 1222 2223344556789985 6899999999999999976431110
Q ss_pred ----eecCcCCCEEEEEEecCC------CEEEEEeCCCcEEEEECCC-----CcceEEEc--c-CCCcEEEEEECCCCCc
Q 011971 286 ----KLSGHKSEVCGLKWSYDN------RELASGGNDNRLFVWNQHS-----TQPVLKYC--E-HTAAVKAIAWSPHLHG 347 (474)
Q Consensus 286 ----~~~~h~~~V~~l~~spd~------~~lasg~~Dg~v~iwd~~~-----~~~~~~~~--~-h~~~V~~l~~sp~~~~ 347 (474)
....-...|.++.|-+.. ..|++-..+|.++-|-+.. .+..+.|. . +...|.++.|+|..+.
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L 161 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL 161 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence 011123567788776522 2466667778777666532 23334433 2 4678999999998764
Q ss_pred EEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCC------eEEEEECCCCceeEEEcCCC
Q 011971 348 LLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQN------QIIVWRYPTMSKLATLTGHT 421 (474)
Q Consensus 348 ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg------~I~iwd~~~~~~~~~l~~h~ 421 (474)
|++.|. ....-..+. .....+++-..-.+..+...+..+.++ ...+|.+.+...........
T Consensus 162 LlVgG~--~~~~~~~s~----------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 229 (282)
T PF15492_consen 162 LLVGGC--EQNQDGMSK----------ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQ 229 (282)
T ss_pred EEEecc--CCCCCcccc----------ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCC
Confidence 444443 222100000 011112221111111111111111111 22344444333222222346
Q ss_pred ccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCCC
Q 011971 422 FRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNT 459 (474)
Q Consensus 422 ~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~ 459 (474)
..|..|..||||..||+...+|.|.+|++..-......
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 67999999999999999999999999999876655443
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=4.3e-08 Score=91.60 Aligned_cols=155 Identities=20% Similarity=0.213 Sum_probs=120.8
Q ss_pred eCCC---CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC-----eEEEE
Q 011971 174 DWSS---HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC-----KRVRT 245 (474)
Q Consensus 174 ~~s~---~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~-----~~~~~ 245 (474)
+|+- +.-+++|.+..|-|-|+++|-.... ...+.|.++.|...++++..|+.+|.|.++|+... .+...
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qsf---~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQSF---QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceeeecccccceeEEEEeeccccccc---ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 6763 3347788899999999998865433 35678999999999999999999999999999754 22223
Q ss_pred ecCCCCcEEEEE---ecCCEEEEEeCCCcEEEEECcCCcc--eEeeecCcCCCEEEEE--EecCCCEEEEEeCCCcEEEE
Q 011971 246 MEGHRLRVGALA---WSSSLLSSGSRDKSILQRDIRAQED--FVSKLSGHKSEVCGLK--WSYDNRELASGGNDNRLFVW 318 (474)
Q Consensus 246 ~~~h~~~V~~l~---~~~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l~--~spd~~~lasg~~Dg~v~iw 318 (474)
+ -|...|+++. |+..+|++.+.+|.|++||++.-+. -+..+.+|-..-.-+- ..+....+++++.|...+||
T Consensus 295 l-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 295 L-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred E-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence 3 4888888865 5678999999999999999987552 3777888865443333 34667788999999999999
Q ss_pred ECCCCcceEEEccC
Q 011971 319 NQHSTQPVLKYCEH 332 (474)
Q Consensus 319 d~~~~~~~~~~~~h 332 (474)
.++.+..+.++...
T Consensus 374 sl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 374 SLDSGHLLCTIPFP 387 (425)
T ss_pred ecccCceeeccCCC
Confidence 99999988877543
No 307
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.67 E-value=1.4e-05 Score=83.17 Aligned_cols=275 Identities=12% Similarity=0.096 Sum_probs=164.7
Q ss_pred CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCC-----CEE--EEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCC
Q 011971 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDD-----SVC--SVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHR 250 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~-----~V~--~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~ 250 (474)
+.+++++.++.|+-.|+.+++..-..+..... .+. .+... ++..+++++.+|.|.-+|.++++.+..+....
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 44556666789999999999876655432210 010 11111 22678889999999999999999988776433
Q ss_pred Cc-----E-EEEEecCCEEEEEe---------CCCcEEEEECcCCcceEeeecCcCC-------------------CE-E
Q 011971 251 LR-----V-GALAWSSSLLSSGS---------RDKSILQRDIRAQEDFVSKLSGHKS-------------------EV-C 295 (474)
Q Consensus 251 ~~-----V-~~l~~~~~~l~sgs---------~dg~I~iwd~~~~~~~~~~~~~h~~-------------------~V-~ 295 (474)
.. + ....+.+..++.++ .+|.+..+|..+++..-..-..... .| .
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~ 220 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA 220 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence 21 1 12223346666664 3678899999887743322111110 01 1
Q ss_pred EEEEecCCCEEEEEeCCC------------------cEEEEECCCCcceEEEccCCCcEE------EEEEC----CCCC-
Q 011971 296 GLKWSYDNRELASGGNDN------------------RLFVWNQHSTQPVLKYCEHTAAVK------AIAWS----PHLH- 346 (474)
Q Consensus 296 ~l~~spd~~~lasg~~Dg------------------~v~iwd~~~~~~~~~~~~h~~~V~------~l~~s----p~~~- 346 (474)
...+.+.+..++.++.++ .|.-+|..+++.+..+..-..... ...+. -++.
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 234444566788887655 799999999999887642111110 00111 1222
Q ss_pred -cEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEE----------------ecCCCeEEEEECC
Q 011971 347 -GLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTH----------------GYSQNQIIVWRYP 409 (474)
Q Consensus 347 -~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~----------------g~~dg~I~iwd~~ 409 (474)
.+++.++ .+|.+...|..+|+.+....... ..+..++ ..+++.. ...+|.|.-.|..
T Consensus 301 ~~~V~~g~--~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~ 374 (488)
T cd00216 301 VPAIVHAP--KNGFFYVLDRTTGKLISARPEVE--QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK 374 (488)
T ss_pred eEEEEEEC--CCceEEEEECCCCcEeeEeEeec--cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCC
Confidence 2455543 79999999999999987765321 1123333 2222210 1236788888988
Q ss_pred CCceeEEEcCCC--------ccE--EEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCC
Q 011971 410 TMSKLATLTGHT--------FRV--LYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDS 461 (474)
Q Consensus 410 ~~~~~~~l~~h~--------~~V--~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~~~ 461 (474)
+++.+-+..... ... ..++. .+..|+.++.||.|+.+|..++......+.
T Consensus 375 tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 375 TGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 888776654321 111 11222 556888999999999999999887655443
No 308
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.65 E-value=4.2e-07 Score=82.06 Aligned_cols=144 Identities=15% Similarity=0.126 Sum_probs=95.0
Q ss_pred CcEEEEEcCCeEEEEeCCCCC-EEEEEecCCCCCEEEEEEcCCCCEEEEEeC-----CCcEEEecCCCCeEEEEecCCCC
Q 011971 178 HNVLAVGLGNCVYLWNACSSK-VTKLCDLGIDDSVCSVGWANRNTHLAVGTS-----HGKVQIWDASRCKRVRTMEGHRL 251 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~~~-~~~~~~~~~~~~V~~v~~sp~g~~la~gs~-----dg~I~iwd~~~~~~~~~~~~h~~ 251 (474)
..+...+.|+++.+.+.+.-. ....+...|. .-.+.+....++.+.++.- -+..++|++...+.+..-.....
T Consensus 102 t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~-~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~ 180 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDKDLALMSRIPSIHS-GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD 180 (319)
T ss_pred CceEecCCCceEEEEechHHHhhhhhcccccc-cccccceeecccEEecCCcceEeeccceeeecccccccccccccccc
Confidence 345555568899998876411 1111111111 1122233334554444321 23456666654333222222233
Q ss_pred cEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCC
Q 011971 252 RVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHS 322 (474)
Q Consensus 252 ~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~lasg~~Dg~v~iwd~~~ 322 (474)
.|.+++-++ +++++|+.||.+-+||.+....+...+..|+.+|..+.|+| ++..|+++++||.+.-||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 488888874 78999999999999999998777888899999999999999 678999999999999999865
No 309
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.60 E-value=1.3e-07 Score=61.34 Aligned_cols=39 Identities=33% Similarity=0.637 Sum_probs=36.7
Q ss_pred CceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 011971 411 MSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449 (474)
Q Consensus 411 ~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~ 449 (474)
++++.++.+|...|.+|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357889999999999999999999999999999999997
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.59 E-value=0.0001 Score=69.99 Aligned_cols=215 Identities=13% Similarity=0.125 Sum_probs=146.5
Q ss_pred eeCCC--CcEEEEEc--CCeEEEEeCCCCCEEEEEecCCCCC-EEEEEEcCCCCEEEEEeC-----CCcEEEecCC-CCe
Q 011971 173 VDWSS--HNVLAVGL--GNCVYLWNACSSKVTKLCDLGIDDS-VCSVGWANRNTHLAVGTS-----HGKVQIWDAS-RCK 241 (474)
Q Consensus 173 l~~s~--~~~la~~~--d~~V~lwd~~~~~~~~~~~~~~~~~-V~~v~~sp~g~~la~gs~-----dg~I~iwd~~-~~~ 241 (474)
++.+| ...++.+. +....+||..+++....+....... --.-.|++||++|++.-. .|.|-|||.. +.+
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 34455 45566664 4588999999999988775422111 124689999999998644 5789999998 678
Q ss_pred EEEEecCCCCcEEEEEecC--CEEEEEe------------------CCCcEEEEECcCCcceEee--e--cCcCCCEEEE
Q 011971 242 RVRTMEGHRLRVGALAWSS--SLLSSGS------------------RDKSILQRDIRAQEDFVSK--L--SGHKSEVCGL 297 (474)
Q Consensus 242 ~~~~~~~h~~~V~~l~~~~--~~l~sgs------------------~dg~I~iwd~~~~~~~~~~--~--~~h~~~V~~l 297 (474)
.+..+..|.-.-..+.+.+ ..|+++. .+-++...|..+++ .+.. + ..|.-.|..|
T Consensus 90 ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~-ll~q~~Lp~~~~~lSiRHL 168 (305)
T PF07433_consen 90 RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA-LLEQVELPPDLHQLSIRHL 168 (305)
T ss_pred EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc-eeeeeecCccccccceeeE
Confidence 8888888777777777763 3555542 23345556666665 3333 3 3477789999
Q ss_pred EEecCCCEEEEEeCCCc-------EEEEECCCCcceEEEc-------cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEE
Q 011971 298 KWSYDNRELASGGNDNR-------LFVWNQHSTQPVLKYC-------EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (474)
Q Consensus 298 ~~spd~~~lasg~~Dg~-------v~iwd~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iw 363 (474)
++.++|..++..-..|. |.+++. ++.+..+. .-...+-+|++++++..+++++- ..+++.+|
T Consensus 169 a~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP--rGg~~~~~ 244 (305)
T PF07433_consen 169 AVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP--RGGRVAVW 244 (305)
T ss_pred EecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC--CCCEEEEE
Confidence 99999877666554442 344443 22222222 23568999999999987878765 78999999
Q ss_pred ECCCCceeeeecCCCCeEEEEEcCCCCeEEE
Q 011971 364 NTTTNTHLSCMDTGSQVCNLVWSKNVNELVS 394 (474)
Q Consensus 364 d~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 394 (474)
|..+++.+.... -..+|.++-..++ ++++
T Consensus 245 d~~tg~~~~~~~-l~D~cGva~~~~~-f~~s 273 (305)
T PF07433_consen 245 DAATGRLLGSVP-LPDACGVAPTDDG-FLVS 273 (305)
T ss_pred ECCCCCEeeccc-cCceeeeeecCCc-eEEe
Confidence 999999877654 3457788877777 4444
No 311
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=1.8e-07 Score=87.49 Aligned_cols=158 Identities=18% Similarity=0.293 Sum_probs=114.3
Q ss_pred EEcC--CCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcc---eEeee
Q 011971 215 GWAN--RNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED---FVSKL 287 (474)
Q Consensus 215 ~~sp--~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~---~~~~~ 287 (474)
+|+- .|-++++|. +-.|-+-|++++-... +. ....|.++.|. .+++..|+++|.|..+|++...+ .....
T Consensus 218 awSlni~gyhfs~G~-sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGL-SQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceeeecccc-cceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 6653 244544554 5568888888764322 22 55678888886 58999999999999999997621 12223
Q ss_pred cCcCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCcc---eEEEccCCCcEEEE--EECCCCCcEEEEecCCCCCeEE
Q 011971 288 SGHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHSTQP---VLKYCEHTAAVKAI--AWSPHLHGLLASGGGTADRCIR 361 (474)
Q Consensus 288 ~~h~~~V~~l~~sp-d~~~lasg~~Dg~v~iwd~~~~~~---~~~~~~h~~~V~~l--~~sp~~~~ll~sg~Gt~d~~I~ 361 (474)
.-|.+.|+++..-. ++++|.+.+.+|+|.+||++.-+. +.++.+|-..-.-+ ...+... +++++| .|...+
T Consensus 295 lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~G--dDcytR 371 (425)
T KOG2695|consen 295 LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVG--DDCYTR 371 (425)
T ss_pred EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc-eEEEcc--CeeEEE
Confidence 35889999998776 788999999999999999997666 88888875533333 2344434 555555 899999
Q ss_pred EEECCCCceeeeecCCC
Q 011971 362 FWNTTTNTHLSCMDTGS 378 (474)
Q Consensus 362 iwd~~~~~~~~~~~~~~ 378 (474)
||.++.|+.+.++....
T Consensus 372 iWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 372 IWSLDSGHLLCTIPFPY 388 (425)
T ss_pred EEecccCceeeccCCCC
Confidence 99999999998887543
No 312
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=2e-05 Score=82.18 Aligned_cols=205 Identities=13% Similarity=0.176 Sum_probs=143.3
Q ss_pred EEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCc-EEEEEecC--CEEEEEeCCCc-----EEEEECcCC-----c
Q 011971 215 GWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLR-VGALAWSS--SLLSSGSRDKS-----ILQRDIRAQ-----E 281 (474)
Q Consensus 215 ~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~-V~~l~~~~--~~l~sgs~dg~-----I~iwd~~~~-----~ 281 (474)
+|++.+..+|.|+.+|.|.+++ ...+.++.++.+... |..+.... ++|++.+.|+. |++||+... .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 4678888999999999998887 345566777777777 44444333 58888877764 899998753 1
Q ss_pred ceE--eeecC-----cCCCEEEEEEecCCCEEEEEeCCCcEEEEECC----CCcceEEEccCCCcEEEEEECCCCCcEEE
Q 011971 282 DFV--SKLSG-----HKSEVCGLKWSYDNRELASGGNDNRLFVWNQH----STQPVLKYCEHTAAVKAIAWSPHLHGLLA 350 (474)
Q Consensus 282 ~~~--~~~~~-----h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~----~~~~~~~~~~h~~~V~~l~~sp~~~~ll~ 350 (474)
+++ ..+.. ...++++++.+.+-+.+|+|-.+|.|..+.-. .+....-......+|+++++..++..++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 222 12222 35678999999999999999999999998632 12212222245679999999999887333
Q ss_pred EecCCCCCeEEEEECCCCce-eeeec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEc-CCCccEEE
Q 011971 351 SGGGTADRCIRFWNTTTNTH-LSCMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLT-GHTFRVLY 426 (474)
Q Consensus 351 sg~Gt~d~~I~iwd~~~~~~-~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~h~~~V~~ 426 (474)
+. .-..|.+|.+....+ ...++ ++..+.|..+++....++++ ....|.+|+.+...+-..+. ||...+..
T Consensus 189 v~---Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca---~~e~l~fY~sd~~~~cfaf~~g~kk~~~~ 261 (933)
T KOG2114|consen 189 VA---TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA---GSEFLYFYDSDGRGPCFAFEVGEKKEMLV 261 (933)
T ss_pred EE---ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe---cCceEEEEcCCCcceeeeecCCCeEEEEE
Confidence 32 357799999985442 33244 56778888888877766663 46789999998877777777 77665443
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.6e-06 Score=83.92 Aligned_cols=234 Identities=14% Similarity=0.110 Sum_probs=165.4
Q ss_pred CCcEEEEEcCCeEEEEeCCCCCEEEEEe--cCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEecCCCCeEEEEecCCCCcE
Q 011971 177 SHNVLAVGLGNCVYLWNACSSKVTKLCD--LGIDDSVCSVGWANRNTHLAVGTS-HGKVQIWDASRCKRVRTMEGHRLRV 253 (474)
Q Consensus 177 ~~~~la~~~d~~V~lwd~~~~~~~~~~~--~~~~~~V~~v~~sp~g~~la~gs~-dg~I~iwd~~~~~~~~~~~~h~~~V 253 (474)
.+-++.++.||.++.|.-..-..+.... ..|...|.+++.+.+|-++++++. |..++++|+++-..+..++--. ..
T Consensus 20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~-lP 98 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD-LP 98 (558)
T ss_pred hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccccc-CC
Confidence 3667888899999999876533333332 267788999999999999999777 9999999998766554433111 11
Q ss_pred EEEEec---C----CEEEEEeCCCcEEEEECcCCc-ceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC---
Q 011971 254 GALAWS---S----SLLSSGSRDKSILQRDIRAQE-DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS--- 322 (474)
Q Consensus 254 ~~l~~~---~----~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~--- 322 (474)
..+.|. + .+-++.-.++.|.++|-.... +....-.-|.++|..+.+++-+..+++....|.|..|....
T Consensus 99 g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~q 178 (558)
T KOG0882|consen 99 GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQ 178 (558)
T ss_pred CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCccc
Confidence 223332 2 233344567899999987765 33444556999999999999999999999999999999873
Q ss_pred ---Ccc---------eEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC--------------
Q 011971 323 ---TQP---------VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-------------- 376 (474)
Q Consensus 323 ---~~~---------~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~-------------- 376 (474)
.+. +..+........++.|+|++..+-..+ .|..|+++++++|+.++.++.
T Consensus 179 fPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~---~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~ 255 (558)
T KOG0882|consen 179 FPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN---PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYG 255 (558)
T ss_pred CccccccccccccchhhcccccccCccceEEccccCcccccC---cccEEEEEEeccchhhhhhhccchhhhhccccccc
Confidence 111 122223456778999999998665554 799999999999987665531
Q ss_pred -------------------C-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEE
Q 011971 377 -------------------G-SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATL 417 (474)
Q Consensus 377 -------------------~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l 417 (474)
+ ..-..+.|...+++|+- |. ---|+|.++.+...+..+
T Consensus 256 l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly--~t-~~gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 256 LMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLY--GT-ILGIKVINLDTNTVVRIL 313 (558)
T ss_pred cceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEe--ec-ceeEEEEEeecCeEEEEe
Confidence 1 12356778888888887 42 234788888777666554
No 314
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.56 E-value=1.3e-06 Score=80.68 Aligned_cols=199 Identities=16% Similarity=0.297 Sum_probs=134.7
Q ss_pred CCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcc----eEeeecCcC------------CCEEEEEEecCC--CEEEEE
Q 011971 250 RLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED----FVSKLSGHK------------SEVCGLKWSYDN--RELASG 309 (474)
Q Consensus 250 ~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~----~~~~~~~h~------------~~V~~l~~spd~--~~lasg 309 (474)
...|+++.|. +.+|++|...|.|.++.-..... ....+++|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4568888887 68999999999999997654332 223355554 347788887654 467788
Q ss_pred eCCCcEEEEECCCCc------------------------------------------ceEEE-ccCCCcEEEEEECCCCC
Q 011971 310 GNDNRLFVWNQHSTQ------------------------------------------PVLKY-CEHTAAVKAIAWSPHLH 346 (474)
Q Consensus 310 ~~Dg~v~iwd~~~~~------------------------------------------~~~~~-~~h~~~V~~l~~sp~~~ 346 (474)
++|.+|++|.+.... +.... ..|...+.++.+..|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 899999999875320 00011 24677788999999987
Q ss_pred cEEEEecCCCCCeEEEEECCCCce-ee--eecC------CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC------
Q 011971 347 GLLASGGGTADRCIRFWNTTTNTH-LS--CMDT------GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM------ 411 (474)
Q Consensus 347 ~ll~sg~Gt~d~~I~iwd~~~~~~-~~--~~~~------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~------ 411 (474)
.++.+ .|-.|.+|++.--.. .. .++. ..-|++..|+|....++.. .++.|.|++-|++..
T Consensus 186 t~lSa----DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmY-SsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 186 TLLSA----DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMY-SSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred eeeec----cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEE-ecCCCcEEehhhhhhhhccCc
Confidence 66654 588899999864321 11 1221 1237788899976655544 568899999999732
Q ss_pred ceeEEE----------cCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 412 SKLATL----------TGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 412 ~~~~~l----------~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
..+.+. .+-...|..+.|+++|++|++-+. -+|++||+....
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k 312 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK 312 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence 111111 122456889999999999986643 589999997544
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=3.6e-06 Score=86.93 Aligned_cols=181 Identities=17% Similarity=0.289 Sum_probs=132.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeee
Q 011971 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKL 287 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 287 (474)
.+.++|++++ +++|+.|+.+|.|++++....- .+...|... .-.+.++++|+.||+|.|..+-+.+.. ..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~-~~- 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEI-TQ- 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc----ccCCceEEEecCCCcEEEeeccCCccc-ee-
Confidence 4677787776 7899999999999999876432 444445544 344799999999999999988877632 22
Q ss_pred cCcCCCEEEEEEecC-----CCEEEEEeCCCcEEEEECCCC--cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeE
Q 011971 288 SGHKSEVCGLKWSYD-----NRELASGGNDNRLFVWNQHST--QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCI 360 (474)
Q Consensus 288 ~~h~~~V~~l~~spd-----~~~lasg~~Dg~v~iwd~~~~--~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I 360 (474)
.....++.+++++|+ .+++++||.-| +.++.-+-. +....+....++|.++.|..+ ++|-+ .|--|
T Consensus 109 ~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~---lIAWa---nd~Gv 181 (846)
T KOG2066|consen 109 YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN---LIAWA---NDDGV 181 (846)
T ss_pred EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc---EEEEe---cCCCc
Confidence 234568999999997 56899999998 777764321 111245567889999999854 67765 47779
Q ss_pred EEEECCCCceeeeecCCC-------CeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011971 361 RFWNTTTNTHLSCMDTGS-------QVCNLVWSKNVNELVSTHGYSQNQIIVWRYP 409 (474)
Q Consensus 361 ~iwd~~~~~~~~~~~~~~-------~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 409 (474)
+|||+.+++.+..+.... -.+.+.|.++.+.++ | ...+|+|..+.
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI---G-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI---G-WGDSVKICSIK 233 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE---e-cCCeEEEEEEe
Confidence 999999999888776433 256788887766555 4 33467777776
No 316
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=5.3e-07 Score=87.10 Aligned_cols=209 Identities=16% Similarity=0.072 Sum_probs=151.9
Q ss_pred CCCcEEEEEec-CCEEEEEeCCCcEEEEECcC--CcceEeeecCcCCCEEEEEEecCCCEEEEEeC-CCcEEEEECCCCc
Q 011971 249 HRLRVGALAWS-SSLLSSGSRDKSILQRDIRA--QEDFVSKLSGHKSEVCGLKWSYDNRELASGGN-DNRLFVWNQHSTQ 324 (474)
Q Consensus 249 h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~--~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~-Dg~v~iwd~~~~~ 324 (474)
|...|+.+... .+++.+++.||.++.|.-.. +...+..+..|...|.+++.+.++.++.+++. |..++++|+.+..
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence 67777777666 68999999999999997643 33456667789999999999999999999888 9999999998765
Q ss_pred ceEEEc--cCCCcEEEEEECC-CCCcEEEEecCCCCCeEEEEECCCCceeeee---cCCCCeEEEEEcCCCCeEEEEEec
Q 011971 325 PVLKYC--EHTAAVKAIAWSP-HLHGLLASGGGTADRCIRFWNTTTNTHLSCM---DTGSQVCNLVWSKNVNELVSTHGY 398 (474)
Q Consensus 325 ~~~~~~--~h~~~V~~l~~sp-~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~~g~ 398 (474)
.+..++ .-.+.+..+ .++ +-..+++.+. ..++.|.++|-....+...+ .+.++|..+.+++.+..+++ ..
T Consensus 88 minmiKL~~lPg~a~wv-~skGd~~s~IAVs~-~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS--iD 163 (558)
T KOG0882|consen 88 MINMIKLVDLPGFAEWV-TSKGDKISLIAVSL-FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS--ID 163 (558)
T ss_pred hhhhcccccCCCceEEe-cCCCCeeeeEEeec-ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee--cc
Confidence 443322 222322222 122 1222444442 37899999997765432222 26788999999999999998 77
Q ss_pred CCCeEEEEECCC-C-----ceeE---------EEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCC
Q 011971 399 SQNQIIVWRYPT-M-----SKLA---------TLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDS 461 (474)
Q Consensus 399 ~dg~I~iwd~~~-~-----~~~~---------~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~~~ 461 (474)
..|.|.-|..+. . .... .+........++.|+|+|..+.+-+.|..|+++++.++...+..++
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 889999998762 1 1111 1222345678999999999999999999999999999987776543
No 317
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.52 E-value=0.00034 Score=66.45 Aligned_cols=230 Identities=15% Similarity=0.127 Sum_probs=156.2
Q ss_pred CCEEEEEEcC-CCCEEEEEeCCCc-EEEecCCCCeEEEEecCCCCcE--EEEEec--CCEEEEEe-----CCCcEEEEEC
Q 011971 209 DSVCSVGWAN-RNTHLAVGTSHGK-VQIWDASRCKRVRTMEGHRLRV--GALAWS--SSLLSSGS-----RDKSILQRDI 277 (474)
Q Consensus 209 ~~V~~v~~sp-~g~~la~gs~dg~-I~iwd~~~~~~~~~~~~h~~~V--~~l~~~--~~~l~sgs-----~dg~I~iwd~ 277 (474)
.....++.+| .+..++.+-.-|+ ..+||..+++....+....++- ..-.|+ +.+|++.- ..|.|-|||.
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 3445678888 5667777777775 7899999999888776544332 234565 56777754 3578999999
Q ss_pred cCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC------------------CCcEEEEECCCCcceEE--E--ccCCCc
Q 011971 278 RAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN------------------DNRLFVWNQHSTQPVLK--Y--CEHTAA 335 (474)
Q Consensus 278 ~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~------------------Dg~v~iwd~~~~~~~~~--~--~~h~~~ 335 (474)
...-..+..+..|.-....+.+.|||+.|+++.. +-.+.+.|..+++.+.+ + ..|...
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 9555567778778777788899999988877531 23566778888887766 4 337889
Q ss_pred EEEEEECCCCCcEEEEec-CC-CCC--eEEEEECCCCceeeeec--------CCCCeEEEEEcCCCCeEEEEEecCCCeE
Q 011971 336 VKAIAWSPHLHGLLASGG-GT-ADR--CIRFWNTTTNTHLSCMD--------TGSQVCNLVWSKNVNELVSTHGYSQNQI 403 (474)
Q Consensus 336 V~~l~~sp~~~~ll~sg~-Gt-~d~--~I~iwd~~~~~~~~~~~--------~~~~v~~l~~s~~~~~l~~~~g~~dg~I 403 (474)
|..+++.++|.-+++.-. |. .+. -|-+++. +..+..+. ....+-+|+++.++..++++ .-.-|.+
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t-sPrGg~~ 241 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT-SPRGGRV 241 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEE-CCCCCEE
Confidence 999999999863333211 00 011 1333332 33233322 34679999999999999886 4577899
Q ss_pred EEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcE
Q 011971 404 IVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETL 445 (474)
Q Consensus 404 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I 445 (474)
.+||..+++.+....-. .+..++..+++ ++++. ..|.+
T Consensus 242 ~~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ss-G~G~~ 279 (305)
T PF07433_consen 242 AVWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSS-GQGQL 279 (305)
T ss_pred EEEECCCCCEeeccccC--ceeeeeecCCc-eEEeC-CCccE
Confidence 99999999988776533 35677777776 55544 44553
No 318
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.45 E-value=5.3e-05 Score=78.24 Aligned_cols=151 Identities=9% Similarity=0.034 Sum_probs=109.0
Q ss_pred EecCCCEEEEE-eCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCC----------------------
Q 011971 299 WSYDNRELASG-GNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGT---------------------- 355 (474)
Q Consensus 299 ~spd~~~lasg-~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt---------------------- 355 (474)
+.+||+.+... -..+.+.+.|..+.+...++.-. +....++++|++.++++++..+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 34566544322 23456777888877766665432 2446678888888777775211
Q ss_pred ---------------CCCeEEEEECCC-----CceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce--
Q 011971 356 ---------------ADRCIRFWNTTT-----NTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK-- 413 (474)
Q Consensus 356 ---------------~d~~I~iwd~~~-----~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~-- 413 (474)
.++.|.+.|..+ .+.+..+..+.....+.++|||++++++ +..++.+.|.|+.+.+.
T Consensus 279 ~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVa-nklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 279 ARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIAN-GKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred HHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEe-CCCCCcEEEEEChhhhhhh
Confidence 125588888887 4677788888999999999999999997 66899999999988653
Q ss_pred ----------eEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 414 ----------LATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 414 ----------~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
+.+..- ...-...+|.++|....|...|..|..||+..
T Consensus 358 ~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 358 DGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 444443 23346789999999888889999999999986
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.45 E-value=9.3e-05 Score=76.47 Aligned_cols=261 Identities=11% Similarity=0.026 Sum_probs=147.4
Q ss_pred CcEEEEEc--CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEc--CCCCEEEEEeC-------C-----------CcEEEe
Q 011971 178 HNVLAVGL--GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWA--NRNTHLAVGTS-------H-----------GKVQIW 235 (474)
Q Consensus 178 ~~~la~~~--d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~s--p~g~~la~gs~-------d-----------g~I~iw 235 (474)
+++|.+-. ...|-.-++...+..+++++.....+..+++- |+..|+++++. | +.+.+.
T Consensus 141 Gr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvI 220 (635)
T PRK02888 141 GRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAV 220 (635)
T ss_pred eeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEE
Confidence 34555553 34666667766666666666555555555554 45555554432 3 345555
Q ss_pred cCCCCeEEEEecCC-CCcEEEEEecCCEEEEEeCC----CcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEe
Q 011971 236 DASRCKRVRTMEGH-RLRVGALAWSSSLLSSGSRD----KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG 310 (474)
Q Consensus 236 d~~~~~~~~~~~~h-~~~V~~l~~~~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~ 310 (474)
|.++.+...++.-- .-....+..++.++++.+.+ .++...+..... .+..+.-.. + .++.++|++...
T Consensus 221 D~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-~~vvfni~~--i--ea~vkdGK~~~V-- 293 (635)
T PRK02888 221 DAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-WVVVFNIAR--I--EEAVKAGKFKTI-- 293 (635)
T ss_pred ECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCc-eEEEEchHH--H--HHhhhCCCEEEE--
Confidence 65555544443311 11112222234555555421 122222221111 111110000 0 023457777665
Q ss_pred CCCcEEEEECCC----C-cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce------------eee
Q 011971 311 NDNRLFVWNQHS----T-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH------------LSC 373 (474)
Q Consensus 311 ~Dg~v~iwd~~~----~-~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~------------~~~ 373 (474)
.++.|.+.|.++ + +.+..+ .-......++++|||+++++++. .+.++.++|+.+.+. ..+
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVank--lS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGK--LSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCC--CCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 367899999988 3 444444 44556788999999999999886 899999999988653 455
Q ss_pred ecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC----------CceeEEEcCCCccEEEEE------ECCCCCEEE
Q 011971 374 MDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT----------MSKLATLTGHTFRVLYLA------ISPDGQTIV 437 (474)
Q Consensus 374 ~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~----------~~~~~~l~~h~~~V~~l~------~spdg~~l~ 437 (474)
+..+......+|.++|+...+ -+-|.+|..|++.. ...+..+.-|-.+. ++. -.|||++|+
T Consensus 371 vevGlGPLHTaFDg~G~ayts--lf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pg-h~~~~~g~t~~~dgk~l~ 447 (635)
T PRK02888 371 PELGLGPLHTAFDGRGNAYTT--LFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPG-HNHASMGETKEADGKWLV 447 (635)
T ss_pred eccCCCcceEEECCCCCEEEe--EeecceeEEEehHHHHHHhccccCCcceecccCCCccc-eeeecCCCcCCCCCCEEE
Confidence 566677788899999875555 67899999999875 23444444343322 222 357888888
Q ss_pred EEeCCCcEEEEeCC
Q 011971 438 TGAGDETLRFWNVF 451 (474)
Q Consensus 438 t~s~Dg~I~iW~l~ 451 (474)
+...=..=|+..+.
T Consensus 448 ~~nk~skdrfl~vg 461 (635)
T PRK02888 448 SLNKFSKDRFLPVG 461 (635)
T ss_pred EccccccccccCCC
Confidence 76543333344443
No 320
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=4.4e-06 Score=86.50 Aligned_cols=269 Identities=14% Similarity=0.201 Sum_probs=160.0
Q ss_pred CcceeeeeCCC-CcEEEEEc-----CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC
Q 011971 167 DFYLNLVDWSS-HNVLAVGL-----GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC 240 (474)
Q Consensus 167 d~~v~~l~~s~-~~~la~~~-----d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~ 240 (474)
|..-+..+|+| ..++|++. +|.|.||- ++|+...-. ...-.+++++|+|..-.|+.|-.-|.+.+|...+.
T Consensus 15 davsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--ccceehhhhccChHHHHHhhccccceeEEEecCCc
Confidence 34456788999 67777764 67888884 455543322 23345778999999999999999999999998887
Q ss_pred eEEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcce-EeeecCcC--C--CEEEEEEecCCC------EEE
Q 011971 241 KRVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDF-VSKLSGHK--S--EVCGLKWSYDNR------ELA 307 (474)
Q Consensus 241 ~~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~-~~~~~~h~--~--~V~~l~~spd~~------~la 307 (474)
+.-.....|..+|..+.|+ ++.++++..-|.|.+|......+. ...+..|. . ..++...++++. ..+
T Consensus 92 e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaa 171 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAA 171 (1416)
T ss_pred eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhh
Confidence 7776677899999999998 689999999999999987643321 11112222 1 234555566632 233
Q ss_pred EEeCCCcEE-EEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEc
Q 011971 308 SGGNDNRLF-VWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWS 386 (474)
Q Consensus 308 sg~~Dg~v~-iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s 386 (474)
+.+.++-+- .++.+........ .|.+ .|+|..+++++ .+|+|+..|- .|++....+.++.| .+.|.
T Consensus 172 VtgDe~alD~~fnwk~~~a~rs~-~ksg-------v~~g~~F~~~~---~~GtVyyvdq-~g~~~~V~k~dS~v-QmLf~ 238 (1416)
T KOG3617|consen 172 VTGDESALDEPFNWKESLAERSD-EKSG-------VPKGTEFLFAG---KSGTVYYVDQ-NGRQRTVHKLDSEV-QMLFM 238 (1416)
T ss_pred ccCchhhhcccccCccchhhccc-cccC-------CCCCcEEEEEc---CCceEEEEcC-CCcEEEEEEccchH-HHHHh
Confidence 444443332 3332211111111 1221 36666666665 7999888773 45555554444431 22233
Q ss_pred CCCCeEEEEEecCCCeEEEEECC-CC---------------ce---------eEEEc-------CCCccEEEEEECCCCC
Q 011971 387 KNVNELVSTHGYSQNQIIVWRYP-TM---------------SK---------LATLT-------GHTFRVLYLAISPDGQ 434 (474)
Q Consensus 387 ~~~~~l~~~~g~~dg~I~iwd~~-~~---------------~~---------~~~l~-------~h~~~V~~l~~spdg~ 434 (474)
+.-..+++.. .+-.+.++-+. +| .. -..+. .....+++++++..+.
T Consensus 239 ~~~eai~~i~--e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~ 316 (1416)
T KOG3617|consen 239 GYCEAISIII--EFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEI 316 (1416)
T ss_pred cccceEEEEe--eeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccce
Confidence 3222222211 11122222111 00 00 00000 1234689999999999
Q ss_pred EEEEEeCCCcEEEEeCCCC
Q 011971 435 TIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 435 ~l~t~s~Dg~I~iW~l~~~ 453 (474)
.|..|...|.+.+|.=.+.
T Consensus 317 ~l~agt~~gnv~~w~~v~~ 335 (1416)
T KOG3617|consen 317 RLWAGTKEGNVTIWLDVNK 335 (1416)
T ss_pred EEEecccCCcEEEeeecCc
Confidence 9999999999999965443
No 321
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.42 E-value=0.00027 Score=70.38 Aligned_cols=250 Identities=14% Similarity=0.175 Sum_probs=143.6
Q ss_pred cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCC--------------
Q 011971 185 LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHR-------------- 250 (474)
Q Consensus 185 ~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~-------------- 250 (474)
..+.++|||+.+++...+... ...+....|+|+|+.+|... ++.|.+++..+++..+.-..-.
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeE 97 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEE 97 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHH
T ss_pred cceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccc
Confidence 346899999999888776532 57889999999999999886 5789999988775443322111
Q ss_pred ---CcEEEEEecC--CEEEEEeCC-C-----------------------------------cEEEEECcCCcceE-eee-
Q 011971 251 ---LRVGALAWSS--SLLSSGSRD-K-----------------------------------SILQRDIRAQEDFV-SKL- 287 (474)
Q Consensus 251 ---~~V~~l~~~~--~~l~sgs~d-g-----------------------------------~I~iwd~~~~~~~~-~~~- 287 (474)
..-..+-|++ +.|+....| . .+.++|+.+++... ...
T Consensus 98 Ev~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~ 177 (353)
T PF00930_consen 98 EVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPN 177 (353)
T ss_dssp HTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---H
T ss_pred cccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecc
Confidence 1223456663 344333211 1 13345555444211 111
Q ss_pred --cCcCCCEEEEEEecCCCEEEEE--eCCC---cEEEEECCCCcceEEEcc-CCCc---EEEEEEC-CCCCcEEEEecCC
Q 011971 288 --SGHKSEVCGLKWSYDNRELASG--GNDN---RLFVWNQHSTQPVLKYCE-HTAA---VKAIAWS-PHLHGLLASGGGT 355 (474)
Q Consensus 288 --~~h~~~V~~l~~spd~~~lasg--~~Dg---~v~iwd~~~~~~~~~~~~-h~~~---V~~l~~s-p~~~~ll~sg~Gt 355 (474)
..-...+..+.|.+++..|+.. ..+. .+.++|..++.....+.. ..+. .....|. +++..++....
T Consensus 178 ~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-- 255 (353)
T PF00930_consen 178 SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-- 255 (353)
T ss_dssp HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE--
T ss_pred ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE--
Confidence 1234567889999998844433 2222 477788877655433322 2222 2355554 77776666654
Q ss_pred CCCe--EEEEECCCCceeeeecCCCCeEE-EEEcCCCCeEEEEEec-C--CCeEEEEECCCCceeEEEcCCCccEEEEEE
Q 011971 356 ADRC--IRFWNTTTNTHLSCMDTGSQVCN-LVWSKNVNELVSTHGY-S--QNQIIVWRYPTMSKLATLTGHTFRVLYLAI 429 (474)
Q Consensus 356 ~d~~--I~iwd~~~~~~~~~~~~~~~v~~-l~~s~~~~~l~~~~g~-~--dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~ 429 (474)
.||. |.+++...+.........-.|.. +.|+++++.++.++.. . ...|..-++..+..+..+......-..+.|
T Consensus 256 ~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~ 335 (353)
T PF00930_consen 256 RDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASF 335 (353)
T ss_dssp TTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE
T ss_pred cCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEE
Confidence 4554 66667766664433334455644 7788988887765322 1 235555556534555666544433368999
Q ss_pred CCCCCEEEEE
Q 011971 430 SPDGQTIVTG 439 (474)
Q Consensus 430 spdg~~l~t~ 439 (474)
||+|++++-.
T Consensus 336 Spdg~y~v~~ 345 (353)
T PF00930_consen 336 SPDGKYYVDT 345 (353)
T ss_dssp -TTSSEEEEE
T ss_pred CCCCCEEEEE
Confidence 9999987744
No 322
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.42 E-value=1e-06 Score=57.14 Aligned_cols=37 Identities=38% Similarity=0.713 Sum_probs=35.3
Q ss_pred eEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011971 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319 (474)
Q Consensus 283 ~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd 319 (474)
++..+.+|.+.|.+|+|+|++.+|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5778899999999999999999999999999999997
No 323
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.41 E-value=7.3e-08 Score=96.73 Aligned_cols=200 Identities=22% Similarity=0.334 Sum_probs=137.1
Q ss_pred CCCCcceeeeeCCC---CcEEEEEc-CCeEEEEeCCCCCEE-EEEecCCCCCEEEEEEcC-CCCEEEEEeC----CCcEE
Q 011971 164 LQDDFYLNLVDWSS---HNVLAVGL-GNCVYLWNACSSKVT-KLCDLGIDDSVCSVGWAN-RNTHLAVGTS----HGKVQ 233 (474)
Q Consensus 164 ~~~d~~v~~l~~s~---~~~la~~~-d~~V~lwd~~~~~~~-~~~~~~~~~~V~~v~~sp-~g~~la~gs~----dg~I~ 233 (474)
..+-.|+.|++|.- ..++++|. +|.|.+-......-. ..+..++....++++|++ |.++||+|-. |..+.
T Consensus 53 ~sdtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 53 WSDTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred cccCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 44566899999985 35788885 688888877644332 333346788999999998 5678888853 56799
Q ss_pred EecCCCC----eEEEEecC-CCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec-CCCE
Q 011971 234 IWDASRC----KRVRTMEG-HRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY-DNRE 305 (474)
Q Consensus 234 iwd~~~~----~~~~~~~~-h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~ 305 (474)
|||+.++ +....+.+ -.....+++|. ..++++|...+.+.++|++....... .-.+..+.++...| .+++
T Consensus 133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~--svnTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS--SVNTKYVQGITVDPFSPNY 210 (783)
T ss_pred ceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh--hhhhhhcccceecCCCCCc
Confidence 9999876 11112222 33445578886 46888999999999999985432122 22345577788888 7778
Q ss_pred EEEEeCCCcEEEEE-CCCC-cceEEEccC----CCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCC
Q 011971 306 LASGGNDNRLFVWN-QHST-QPVLKYCEH----TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (474)
Q Consensus 306 lasg~~Dg~v~iwd-~~~~-~~~~~~~~h----~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~ 367 (474)
+++-. ||.|.+|| .+.- .++..+... ...+..++|+|....++++.. -..++|+++|+..
T Consensus 211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~-RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLS-RDSITIRLYDICV 276 (783)
T ss_pred eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhc-cCcceEEEecccc
Confidence 77765 99999999 4332 223222222 234899999999888888775 2568899999763
No 324
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.40 E-value=4.4e-05 Score=78.12 Aligned_cols=274 Identities=17% Similarity=0.201 Sum_probs=159.5
Q ss_pred cceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeE-----
Q 011971 168 FYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR----- 242 (474)
Q Consensus 168 ~~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~----- 242 (474)
.+++|++-+...+..+++.|.||+|+-.+++....-.-+..+.+..+..+++..++|+|+..|.|.|+-++....
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 467888866666666667899999999988876655434456777788899999999999999999998865321
Q ss_pred EEEe-cCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCc---ceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEE
Q 011971 243 VRTM-EGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQE---DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (474)
Q Consensus 243 ~~~~-~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~ 316 (474)
+... ..|..+|++++|+ +..+++|...|.|....+.... .....+....++|..|... ++.+|++... ...
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~--r~~ 192 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT--RCI 192 (726)
T ss_pred eccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh--hhh
Confidence 1111 2478999999998 4789999999999998887621 1123334455677777654 3334444333 334
Q ss_pred EEECCCCcceEEEc-cCCC-cEEEEEECCC----CCcEEEEecCCCCCeEEEEECCC-Cceeeeec--------------
Q 011971 317 VWNQHSTQPVLKYC-EHTA-AVKAIAWSPH----LHGLLASGGGTADRCIRFWNTTT-NTHLSCMD-------------- 375 (474)
Q Consensus 317 iwd~~~~~~~~~~~-~h~~-~V~~l~~sp~----~~~ll~sg~Gt~d~~I~iwd~~~-~~~~~~~~-------------- 375 (474)
+++.+.+...+.=+ ...+ .-...+|-|. +.-.++++ --..|+|...- |..+.++.
T Consensus 193 Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca----RPG~RlWead~~G~V~~Thqfk~ala~~p~p~i~ 268 (726)
T KOG3621|consen 193 LCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA----RPGLRLWEADFAGEVIKTHQFKDALARPPAPEIP 268 (726)
T ss_pred eeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe----cCCCceEEeecceeEEEeeehhhhhccCCCCccc
Confidence 45554332111100 1111 1223344333 33344443 34467886542 33333221
Q ss_pred CCC-----------CeEEEEE-----cCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEE
Q 011971 376 TGS-----------QVCNLVW-----SKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTG 439 (474)
Q Consensus 376 ~~~-----------~v~~l~~-----s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~ 439 (474)
..+ +-..+.| -..+..|+. .+--|+|+|..+.+.+.-.. -...|..++- +|+-|+.-
T Consensus 269 ~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~----te~Giyv~d~~~~~v~l~se-~~~DI~dVs~--~~neiFvL 341 (726)
T KOG3621|consen 269 IRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAW----TEVGIYVFDSNNSQVYLWSE-GGHDILDVSH--CGNEIFVL 341 (726)
T ss_pred CCCcCCccccCCCCCccccccceeEEeecceEEEe----ecceEEEEEeccceEEEeec-CCCceeEEee--cCceEEEE
Confidence 001 0111111 111222222 23338888877665554332 2344666655 55567777
Q ss_pred eCCCcEEEEeCCCCCC
Q 011971 440 AGDETLRFWNVFPSPK 455 (474)
Q Consensus 440 s~Dg~I~iW~l~~~~~ 455 (474)
-.|+.+++..+....+
T Consensus 342 ~~d~~l~~~sv~s~qr 357 (726)
T KOG3621|consen 342 NLDRGLKVESVASRQR 357 (726)
T ss_pred ecCCceeEEEeehhHH
Confidence 7788888888876654
No 325
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.40 E-value=0.00022 Score=68.51 Aligned_cols=232 Identities=12% Similarity=0.086 Sum_probs=149.4
Q ss_pred CeEEEEeCCCCCEEEEEecCCC------CCEEEEEEcCCCCEEEEEeC--CCcEEEecCCCCeEEEEecCCCCcEEEEEe
Q 011971 187 NCVYLWNACSSKVTKLCDLGID------DSVCSVGWANRNTHLAVGTS--HGKVQIWDASRCKRVRTMEGHRLRVGALAW 258 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~~~------~~V~~v~~sp~g~~la~gs~--dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 258 (474)
..|.+||..+-.....+.+... .....++++.||+++++... .-.|.|.|++..+.+..+.- .+...-.-+
T Consensus 67 Dvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC~~iyP~ 145 (342)
T PF06433_consen 67 DVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGCWLIYPS 145 (342)
T ss_dssp EEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSEEEEEEE
T ss_pred eEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCEEEEEec
Confidence 3699999999988877766432 12234678899998888654 45799999999999887752 222222333
Q ss_pred cCCEEEEEeCCCcEEEEECcCCcceEee----ecCcCCCE-EEEEEecCCCEEEEEeCCCcEEEEECCCCcceE--EEcc
Q 011971 259 SSSLLSSGSRDKSILQRDIRAQEDFVSK----LSGHKSEV-CGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL--KYCE 331 (474)
Q Consensus 259 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~----~~~h~~~V-~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~--~~~~ 331 (474)
.+..|.+-|.||.+....+....+...+ +.....++ ..-++...+..++--+.+|.|+-.|+....... .+..
T Consensus 146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 146 GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence 4678999999999999988855433221 11112222 223344556667778889999999987654321 1211
Q ss_pred ----------CCCcEEEEEECCCCCcEEEEec-C---C-CC--CeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEE
Q 011971 332 ----------HTAAVKAIAWSPHLHGLLASGG-G---T-AD--RCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVS 394 (474)
Q Consensus 332 ----------h~~~V~~l~~sp~~~~ll~sg~-G---t-~d--~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 394 (474)
-.+.-.-+++++..+.|++.-. | + .| ..|-++|+.+++.+..+....++.+|..+.+.+-++.
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~ 305 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLY 305 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEE
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEE
Confidence 1123345677766555544321 1 0 11 2488889999999999998888999999998886554
Q ss_pred EEecCCCeEEEEECCCCceeEEEcC
Q 011971 395 THGYSQNQIIVWRYPTMSKLATLTG 419 (474)
Q Consensus 395 ~~g~~dg~I~iwd~~~~~~~~~l~~ 419 (474)
+....++.|.+||..+++.+.++..
T Consensus 306 ~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 306 ALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEETTTTEEEEEETTT--EEEEE--
T ss_pred EEcCCCCeEEEEeCcCCcEEeehhc
Confidence 3345689999999999999988864
No 326
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.40 E-value=0.00012 Score=73.22 Aligned_cols=240 Identities=17% Similarity=0.224 Sum_probs=136.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe-------------------------------------------EEEEe
Q 011971 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCK-------------------------------------------RVRTM 246 (474)
Q Consensus 210 ~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~-------------------------------------------~~~~~ 246 (474)
.|+++.|+++..-|++|...|.|.||.....+ ....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999998889999999999998642110 11122
Q ss_pred cCCCCcEEEEEecC-CEEEEEeCCCcEEEEECcCCcceEe-eecC------cCCCEEEEEEec-----CC---CEEEEEe
Q 011971 247 EGHRLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDFVS-KLSG------HKSEVCGLKWSY-----DN---RELASGG 310 (474)
Q Consensus 247 ~~h~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~-~~~~------h~~~V~~l~~sp-----d~---~~lasg~ 310 (474)
....++|++++.+. .+++.|..+|.+.|.|+|.+..... .+.. ....|+++.|.- |+ -.|++|.
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 33467899999875 8999999999999999987763221 1111 234688888873 33 3688999
Q ss_pred CCCcEEEEECC-C--Ccc----eEEEccCCCcEEEEE-ECCC-C-------------------CcEEEEecCCCCCeEEE
Q 011971 311 NDNRLFVWNQH-S--TQP----VLKYCEHTAAVKAIA-WSPH-L-------------------HGLLASGGGTADRCIRF 362 (474)
Q Consensus 311 ~Dg~v~iwd~~-~--~~~----~~~~~~h~~~V~~l~-~sp~-~-------------------~~ll~sg~Gt~d~~I~i 362 (474)
+.|.+.+|.+. . +.. ......+.+.|..+. ++.+ | +.+++.. .+..+++
T Consensus 163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv---Se~~irv 239 (395)
T PF08596_consen 163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV---SESDIRV 239 (395)
T ss_dssp TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE----SSEEEE
T ss_pred CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE---cccceEE
Confidence 99999999874 1 111 111224556665554 3211 1 2244444 3788999
Q ss_pred EECCCCceeeeecCCCC-eEEEEEc-----CCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCC----ccEEEEEECCC
Q 011971 363 WNTTTNTHLSCMDTGSQ-VCNLVWS-----KNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHT----FRVLYLAISPD 432 (474)
Q Consensus 363 wd~~~~~~~~~~~~~~~-v~~l~~s-----~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~----~~V~~l~~spd 432 (474)
+...+.+.......... ...+.+- ..+..|++ -..+|.|++|.++..+.+..+.-+. ..+....++++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~--l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~ 317 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVC--LFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRN 317 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEE--EETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TT
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEE--EECCCcEEEEECCCchHhhcccCCCccccccccccEECCC
Confidence 99988877665542222 2233442 24455555 5589999999999999998887532 34556788999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCC
Q 011971 433 GQTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 433 g~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
|..++-.+.. .+.++.+.....
T Consensus 318 Gdi~~~~gps-E~~l~sv~~~~~ 339 (395)
T PF08596_consen 318 GDIFYWTGPS-EIQLFSVWGEGR 339 (395)
T ss_dssp S-EEEE-SSS-EEEEEEEES---
T ss_pred CCEEEEeCcc-cEEEEEEEccCC
Confidence 9977766544 455555554433
No 327
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.38 E-value=0.00034 Score=67.23 Aligned_cols=262 Identities=16% Similarity=0.190 Sum_probs=150.6
Q ss_pred CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEecCCCCeEEEEecCCCC-cEEE
Q 011971 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS----------HGKVQIWDASRCKRVRTMEGHRL-RVGA 255 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~----------dg~I~iwd~~~~~~~~~~~~h~~-~V~~ 255 (474)
+.|+|+|..++++.-.+..+. .-.+..+|+++.+++++. .-.|.+||..+......+.-... +..+
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 489999999999988886543 344678999998887542 34699999999988876653332 3322
Q ss_pred EEecCCEEEEEeCCCcEEEEE-----------CcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECC-CC
Q 011971 256 LAWSSSLLSSGSRDKSILQRD-----------IRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH-ST 323 (474)
Q Consensus 256 l~~~~~~l~sgs~dg~I~iwd-----------~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~-~~ 323 (474)
+. ..+.+.....++.+.+++ +...+ .+..+. -+=|.+.+-...+-+.+-|.||.+.-..+. .|
T Consensus 94 ~~-~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k-vv~ei~---~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 94 VP-YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKK-VVGEID---TPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp S---GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTE-EEEEEE---GTSEEEEEEEETTEEEEEETTSCEEEEEETSTS
T ss_pred cc-cccceEEccCCcEEEEEccCCCCeEEEEECCCCc-eeeeec---CCCEEEEEecCCCceEEEecCCceEEEEECCCC
Confidence 21 123333334444455554 44433 222221 111333332223568888899999999887 45
Q ss_pred cceEEEc----c-CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee--eecC-----------CCCeEEEEE
Q 011971 324 QPVLKYC----E-HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS--CMDT-----------GSQVCNLVW 385 (474)
Q Consensus 324 ~~~~~~~----~-h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~--~~~~-----------~~~v~~l~~ 385 (474)
+...+.. . ....+..-++...+..++... .+|.|+-.|+....... .+.. .+.-.-+++
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S---y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~ 245 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS---YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY 245 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEB---TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEe---cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeee
Confidence 5543221 1 111222334444444344332 68888888887654321 1110 122344777
Q ss_pred cCCCCeEEEE-EecCCC-------eEEEEECCCCceeEEEcCCCccEEEEEECCCCC-EEEEE-eCCCcEEEEeCCCCCC
Q 011971 386 SKNVNELVST-HGYSQN-------QIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQ-TIVTG-AGDETLRFWNVFPSPK 455 (474)
Q Consensus 386 s~~~~~l~~~-~g~~dg-------~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~t~-s~Dg~I~iW~l~~~~~ 455 (474)
++..+.|++. +...++ .|-++|+.+.+.+..+.. ...+.+|+.+.|.+ +|++. ..++.|.+||..++..
T Consensus 246 ~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 246 HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp ETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred ccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 7766655553 322222 688889999999998874 24578999998776 66554 4589999999999876
Q ss_pred CCCCC
Q 011971 456 SQNTD 460 (474)
Q Consensus 456 ~~~~~ 460 (474)
....+
T Consensus 325 ~~~~~ 329 (342)
T PF06433_consen 325 VRSIE 329 (342)
T ss_dssp EEEE-
T ss_pred Eeehh
Confidence 55443
No 328
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=1.6e-05 Score=82.29 Aligned_cols=182 Identities=13% Similarity=0.247 Sum_probs=131.4
Q ss_pred CCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEE
Q 011971 250 RLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKY 329 (474)
Q Consensus 250 ~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~ 329 (474)
...+.|++++...|+-|+.+|.|.+++..... .+...|... .-+|.++++|+.||+|.|..+-+.+...++
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~---~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNP---KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCcc---ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 34677888889999999999999999876432 333445443 568999999999999999999888877766
Q ss_pred ccCCCcEEEEEECCC----CCcEEEEecCCCCCeEEEEECC---CCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCe
Q 011971 330 CEHTAAVKAIAWSPH----LHGLLASGGGTADRCIRFWNTT---TNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQ 402 (474)
Q Consensus 330 ~~h~~~V~~l~~sp~----~~~ll~sg~Gt~d~~I~iwd~~---~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~ 402 (474)
....++++++++|+ ...-+++|| .-| +.++.-+ ....+......+.|.++.|. |++++-+ +|--
T Consensus 110 -df~rpiksial~Pd~~~~~sk~fv~GG--~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWa---nd~G 180 (846)
T KOG2066|consen 110 -DFKRPIKSIALHPDFSRQQSKQFVSGG--MAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWA---NDDG 180 (846)
T ss_pred -ecCCcceeEEeccchhhhhhhheeecC--cce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEe---cCCC
Confidence 44678999999998 334567775 555 7666532 22233233456789999986 6666663 5667
Q ss_pred EEEEECCCCceeEEEcCCCcc------EEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 011971 403 IIVWRYPTMSKLATLTGHTFR------VLYLAISPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 403 I~iwd~~~~~~~~~l~~h~~~------V~~l~~spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
|+|||..+.+.+..+...... -..+.|.++.+ |+.| ..-+|++..+.
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 999999999888877643333 24678887654 4444 44589999888
No 329
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.36 E-value=0.0014 Score=59.88 Aligned_cols=119 Identities=12% Similarity=0.078 Sum_probs=79.3
Q ss_pred cEEEEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCC--CCcEEE
Q 011971 179 NVLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGH--RLRVGA 255 (474)
Q Consensus 179 ~~la~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h--~~~V~~ 255 (474)
.++.+| ..+.+.--|..+|++.-...++. .|-+-+.- -|++++.|+..|.+++.+..++.....+..- -..-..
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~--RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGV--RIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCc--eeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 344444 56788888999998865554432 33332222 4788999999999999999999777665421 122234
Q ss_pred EEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEec
Q 011971 256 LAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSY 301 (474)
Q Consensus 256 l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp 301 (474)
+++++..+..|+.|++.+..|.++.. .+.+.+-...-..+-+..+
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccc-eEEecccCCceeccceecC
Confidence 66788999999999999999998876 4444443333233334444
No 330
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.35 E-value=0.0011 Score=67.07 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=85.7
Q ss_pred cEEEEEECCCCCcEEEEecC--CCCCe----EEEEECCCCce----eeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEE
Q 011971 335 AVKAIAWSPHLHGLLASGGG--TADRC----IRFWNTTTNTH----LSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQII 404 (474)
Q Consensus 335 ~V~~l~~sp~~~~ll~sg~G--t~d~~----I~iwd~~~~~~----~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 404 (474)
...++.|+-...+.+.+-.- +.+|. ..+|++..++. +..+...+.+.+++++|+...++. |+.||.|.
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvl--GC~DgSii 284 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVL--GCEDGSII 284 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEE--EecCCeEE
Confidence 34567777655544444210 01222 34666655432 345567899999999999999999 99999999
Q ss_pred EEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC
Q 011971 405 VWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKS 456 (474)
Q Consensus 405 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~ 456 (474)
+||...+.. .+..+.-..+.++|+|+|..+++|+.-|.|.+||+.-.+..
T Consensus 285 LyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 285 LYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred EEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccc
Confidence 999876533 33344566789999999999999999999999999877644
No 331
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=0.0028 Score=63.73 Aligned_cols=261 Identities=15% Similarity=0.134 Sum_probs=173.3
Q ss_pred EEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-CcEEEecCCCCeEEEEecCCCCcEEEEEec--C-CEEE
Q 011971 189 VYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-GKVQIWDASRCKRVRTMEGHRLRVGALAWS--S-SLLS 264 (474)
Q Consensus 189 V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d-g~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~-~~l~ 264 (474)
+.+++..+......+.++ .....+...+++..+.+.... ..+.+.+............-...-..++.+ + ..++
T Consensus 13 ~~v~~~~~~~~~~~~~~~--~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLG--RGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecC--CCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEE
Confidence 667777776666666432 366778888888655554432 245555555222222122111223344554 3 3566
Q ss_pred EEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC---CCcEEEEECCCCcceEEEccCCCcEEEEEE
Q 011971 265 SGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN---DNRLFVWNQHSTQPVLKYCEHTAAVKAIAW 341 (474)
Q Consensus 265 sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~---Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~ 341 (474)
....+..|.+.|............+. ....++++++++.+.++.. ++++.+.|..+.+.......-..+ ..+++
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~ 167 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAV 167 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEE
Confidence 66667899999977665322222222 6778999999977766655 689999999988887775444444 89999
Q ss_pred CCCCCcEEEEecCCCCCeEEEEECCCCceee-----eecCCCCeEEEEEcCCCCeEEEEEecC-CCeEEEEECCCCceeE
Q 011971 342 SPHLHGLLASGGGTADRCIRFWNTTTNTHLS-----CMDTGSQVCNLVWSKNVNELVSTHGYS-QNQIIVWRYPTMSKLA 415 (474)
Q Consensus 342 sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~-----~~~~~~~v~~l~~s~~~~~l~~~~g~~-dg~I~iwd~~~~~~~~ 415 (474)
.|++..++++.. .++.|.+.|........ .+........+.+++++.+++++.... ++.+.+.|..++....
T Consensus 168 ~p~g~~vyv~~~--~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 168 DPDGNKVYVTNS--DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTA 245 (381)
T ss_pred CCCCCeEEEEec--CCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence 999998888764 68999999987766653 244456678899999999887753322 3689999988877766
Q ss_pred E-EcCCCccEEEEEECCCCCEEEEEeC-CCcEEEEeCCCCCCC
Q 011971 416 T-LTGHTFRVLYLAISPDGQTIVTGAG-DETLRFWNVFPSPKS 456 (474)
Q Consensus 416 ~-l~~h~~~V~~l~~spdg~~l~t~s~-Dg~I~iW~l~~~~~~ 456 (474)
. +..-......+..+|+|..+.+... .+.+.+-|.......
T Consensus 246 ~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~ 288 (381)
T COG3391 246 TDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVV 288 (381)
T ss_pred eccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCcee
Confidence 5 2211114567899999999888744 477888877765443
No 332
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.29 E-value=0.00086 Score=69.77 Aligned_cols=232 Identities=11% Similarity=0.078 Sum_probs=141.8
Q ss_pred CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCC----CEE-EEEEcCCCCEEEEEe---------CCCcEEEecCCCCeEE
Q 011971 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDD----SVC-SVGWANRNTHLAVGT---------SHGKVQIWDASRCKRV 243 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~----~V~-~v~~sp~g~~la~gs---------~dg~I~iwd~~~~~~~ 243 (474)
+.+++...++.|+-+|..+|+..-........ .+. +..+. +..+++++ .+|.|..+|.++++.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 56677777899999999999987766543211 011 11222 34566664 3678999999999988
Q ss_pred EEecCCCC--------------------cEE-EEEec--CCEEEEEeCCC------------------cEEEEECcCCcc
Q 011971 244 RTMEGHRL--------------------RVG-ALAWS--SSLLSSGSRDK------------------SILQRDIRAQED 282 (474)
Q Consensus 244 ~~~~~h~~--------------------~V~-~l~~~--~~~l~sgs~dg------------------~I~iwd~~~~~~ 282 (474)
..+..... .|. ..+.+ ...++.++.++ .|.-+|..+++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 77653211 010 12222 46788887665 688889988874
Q ss_pred eEeee-cCcCC--------C-EEEEEEecCCC---EEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEE
Q 011971 283 FVSKL-SGHKS--------E-VCGLKWSYDNR---ELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLL 349 (474)
Q Consensus 283 ~~~~~-~~h~~--------~-V~~l~~spd~~---~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 349 (474)
.-..- ..|.. . +..+. .-++. .++.++.+|.++..|.++++.+...... ...++.+| ..++
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vy 342 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVY 342 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEE
Confidence 43321 11210 0 11111 01333 5778889999999999999988776422 11233444 2233
Q ss_pred EEec---------------CCCCCeEEEEECCCCceeeeecCC---------CCeEEEEEcCCCCeEEEEEecCCCeEEE
Q 011971 350 ASGG---------------GTADRCIRFWNTTTNTHLSCMDTG---------SQVCNLVWSKNVNELVSTHGYSQNQIIV 405 (474)
Q Consensus 350 ~sg~---------------Gt~d~~I~iwd~~~~~~~~~~~~~---------~~v~~l~~s~~~~~l~~~~g~~dg~I~i 405 (474)
+... ...++.|.-.|+.+|+.+...... .....-.....+..+++ ++.+|.|+.
T Consensus 343 v~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~--g~~dG~l~a 420 (488)
T cd00216 343 LGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA--GAADGYFRA 420 (488)
T ss_pred EccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE--ECCCCeEEE
Confidence 3110 114678999999999988877654 11111111124566776 778999999
Q ss_pred EECCCCceeEEEcC
Q 011971 406 WRYPTMSKLATLTG 419 (474)
Q Consensus 406 wd~~~~~~~~~l~~ 419 (474)
+|..+++.+.+++.
T Consensus 421 ld~~tG~~lW~~~~ 434 (488)
T cd00216 421 FDATTGKELWKFRT 434 (488)
T ss_pred EECCCCceeeEEEC
Confidence 99999999888764
No 333
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.26 E-value=0.0019 Score=65.56 Aligned_cols=197 Identities=14% Similarity=0.132 Sum_probs=110.2
Q ss_pred eEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe------EEEEecCCCCcEEEEEecCC
Q 011971 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK------RVRTMEGHRLRVGALAWSSS 261 (474)
Q Consensus 188 ~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~------~~~~~~~h~~~V~~l~~~~~ 261 (474)
.|.||+.... .+..+.... +.|.++.|+.+.+ |++-..||.+++||+.... .+....-....+....+..+
T Consensus 62 ~I~iys~sG~-ll~~i~w~~-~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSSGK-LLSSIPWDS-GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCCCC-EeEEEEECC-CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCC
Confidence 5999998654 444455554 8999999998654 5566789999999986333 11111112223333333322
Q ss_pred EEEEEeCCCcEEEEECcCCcceEeee---c-------CcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEcc
Q 011971 262 LLSSGSRDKSILQRDIRAQEDFVSKL---S-------GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE 331 (474)
Q Consensus 262 ~l~sgs~dg~I~iwd~~~~~~~~~~~---~-------~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~ 331 (474)
-++.-..++.+.+..--........+ . .+........++.+....+....++.+.+.+-...+. + .
T Consensus 139 GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i-~ 214 (410)
T PF04841_consen 139 GIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I-D 214 (410)
T ss_pred CEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c-c
Confidence 23333445555444322211011111 0 0111000123444555555555556666444332211 2 2
Q ss_pred CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC--CCeEEEEEcCCCCeEEE
Q 011971 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG--SQVCNLVWSKNVNELVS 394 (474)
Q Consensus 332 h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~--~~v~~l~~s~~~~~l~~ 394 (474)
..+++..++.||+++.+.+.. .+|.+.+.+..-.+.+.+++.+ .....+.|+-+...++.
T Consensus 215 ~~~~i~~iavSpng~~iAl~t---~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~ 276 (410)
T PF04841_consen 215 SDGPIIKIAVSPNGKFIALFT---DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLS 276 (410)
T ss_pred CCCCeEEEEECCCCCEEEEEE---CCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEE
Confidence 346899999999998665544 6899999887767777777665 66788999876544333
No 334
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.25 E-value=0.0011 Score=61.84 Aligned_cols=194 Identities=12% Similarity=0.138 Sum_probs=115.6
Q ss_pred CCCCCEEEEEEcCCCC-EEEEEeCCCcEEEecCCCCeEEEEecCC-CCcEEEEEecC-CEEEEEe-CCCcEEEEECcCCc
Q 011971 206 GIDDSVCSVGWANRNT-HLAVGTSHGKVQIWDASRCKRVRTMEGH-RLRVGALAWSS-SLLSSGS-RDKSILQRDIRAQE 281 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~-~la~gs~dg~I~iwd~~~~~~~~~~~~h-~~~V~~l~~~~-~~l~sgs-~dg~I~iwd~~~~~ 281 (474)
+-...+..|+|.|+.+ ++++....+.|..++. +++.++.+.-. .+..-.|++.+ +.++... +++.+.++++....
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 4455699999999755 6666777888888886 47888877532 35677788763 5555555 58889999884332
Q ss_pred ce-----Eeee-----cCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC---CcceEEE--------ccCCCcEEEEE
Q 011971 282 DF-----VSKL-----SGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS---TQPVLKY--------CEHTAAVKAIA 340 (474)
Q Consensus 282 ~~-----~~~~-----~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~---~~~~~~~--------~~h~~~V~~l~ 340 (474)
.. ...+ ..+...+.+|+|++.++.|+++-+..-..||.+.. ...+... ......+.+++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 11 1111 13556799999999988888887777767776653 2221111 12345678999
Q ss_pred ECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC----------CCeEEEEEcCCCCeEEEEEecCCCeEEEE
Q 011971 341 WSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG----------SQVCNLVWSKNVNELVSTHGYSQNQIIVW 406 (474)
Q Consensus 341 ~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~----------~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 406 (474)
++|....|++... .++.|..+| ..|+.+..+... .+.-.|+|.++|+..++ + +-+..++|
T Consensus 178 ~~p~t~~lliLS~--es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv--s-EpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSD--ESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV--S-EPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEET--TTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE--E-TTTEEEEE
T ss_pred EcCCCCeEEEEEC--CCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE--c-CCceEEEe
Confidence 9998877877765 889999999 677777666532 37889999999977666 3 56666554
No 335
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.21 E-value=0.0032 Score=61.77 Aligned_cols=278 Identities=15% Similarity=0.121 Sum_probs=138.2
Q ss_pred cceeeeeCCC--CcEEEEEc-C--CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeE
Q 011971 168 FYLNLVDWSS--HNVLAVGL-G--NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR 242 (474)
Q Consensus 168 ~~v~~l~~s~--~~~la~~~-d--~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~ 242 (474)
+|.+-=+|.+ ..+|.++. + ..+++-|+.+++..++.+... .......++++++.++.......|+-.|+++.+.
T Consensus 36 ~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g-~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 36 LYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG-DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp --TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS--B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E
T ss_pred eeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC-CCccceEEecCCCeEEEEECCCeEEEEECCcCcE
Confidence 4444445554 46777664 3 489999999999999886432 2222566778888877665566899999999887
Q ss_pred EEEecCCCCcEEEEEec---CCEEEEEeC-----------------------CCcEEEEECcCCcceEeeecCcCCCEEE
Q 011971 243 VRTMEGHRLRVGALAWS---SSLLSSGSR-----------------------DKSILQRDIRAQEDFVSKLSGHKSEVCG 296 (474)
Q Consensus 243 ~~~~~~h~~~V~~l~~~---~~~l~sgs~-----------------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 296 (474)
...+.....-+....|. ...++.|.. ...|.-.|+.+++ ...+..-...+.-
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~~~~wlgH 192 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFEDTDWLGH 192 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-EEE
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEecCccccC
Confidence 66666666666656663 222233221 1234555666554 3333334556777
Q ss_pred EEEecCCCE-EEEEeC---CC-cEEEEECCC-CcceEEEccC--CCcEEEEEECCCCCcEEEEec--CCCCCeEEEEECC
Q 011971 297 LKWSYDNRE-LASGGN---DN-RLFVWNQHS-TQPVLKYCEH--TAAVKAIAWSPHLHGLLASGG--GTADRCIRFWNTT 366 (474)
Q Consensus 297 l~~spd~~~-lasg~~---Dg-~v~iwd~~~-~~~~~~~~~h--~~~V~~l~~sp~~~~ll~sg~--Gt~d~~I~iwd~~ 366 (474)
+.|+|.... |+.|-+ +. .-+||-+++ +.....+..+ ...+..=-|.|+|..++.-+. |..+..|.-+|..
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 889995544 444433 22 135565443 3333333333 234555679999998776432 2356678889999
Q ss_pred CCceeeeecCCCCeEEEEEcCCCCeEEEEEecC---------------CCeEEEEECCCCceeEEEcCC----------C
Q 011971 367 TNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYS---------------QNQIIVWRYPTMSKLATLTGH----------T 421 (474)
Q Consensus 367 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~---------------dg~I~iwd~~~~~~~~~l~~h----------~ 421 (474)
+++....... .....+.-+++|+.++-= |+. +-.|++++...+.... +..| .
T Consensus 273 t~~~~~~~~~-p~~~H~~ss~Dg~L~vGD-G~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~~ 349 (386)
T PF14583_consen 273 TGERRRLMEM-PWCSHFMSSPDGKLFVGD-GGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGDR 349 (386)
T ss_dssp T--EEEEEEE--SEEEEEE-TTSSEEEEE-E-------------------EEEEEETTTTEEEE-EEE-------BTTBS
T ss_pred CCCceEEEeC-CceeeeEEcCCCCEEEec-CCCCCccccccccceecCCcEEEEeccccCceee-eeeccCcceeecCCC
Confidence 8876443333 245566778888887764 321 1156677776654321 2112 1
Q ss_pred c-cEEEEEECCCCCEEE-EEeCCCcEEEEeCC
Q 011971 422 F-RVLYLAISPDGQTIV-TGAGDETLRFWNVF 451 (474)
Q Consensus 422 ~-~V~~l~~spdg~~l~-t~s~Dg~I~iW~l~ 451 (474)
. .=-...|+|||++|+ ++...|...||-+.
T Consensus 350 q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 350 QVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp STT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred ccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 1 124578999999766 55567777776543
No 336
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.20 E-value=0.0002 Score=72.52 Aligned_cols=204 Identities=15% Similarity=0.181 Sum_probs=130.4
Q ss_pred eEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe---CC-CcEEEecCCCCeEEEEecCCCCcEEEEEecC---
Q 011971 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT---SH-GKVQIWDASRCKRVRTMEGHRLRVGALAWSS--- 260 (474)
Q Consensus 188 ~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs---~d-g~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--- 260 (474)
.+.+=|.. +.....+. .....+..-+|+|++..++... .. ..+.++|+++++....+. ..+.-..-+|++
T Consensus 174 ~l~~~D~d-g~~~~~l~-~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 174 ELALGDYD-GYNQQKLT-DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred eEEEEccC-CcceeEec-ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 45555554 44444443 2355777789999998665542 22 469999999887655554 223334456664
Q ss_pred CEEEEEeCCCcE--EEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCC-C--cEEEEECCCCcceEEEccCCCc
Q 011971 261 SLLSSGSRDKSI--LQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND-N--RLFVWNQHSTQPVLKYCEHTAA 335 (474)
Q Consensus 261 ~~l~sgs~dg~I--~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~D-g--~v~iwd~~~~~~~~~~~~h~~~ 335 (474)
.++++...||.. .+.|+.... ...+..-.+.-+.-.|+|||+.++..+.. | .|.+.|.+.... ..+......
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~ 327 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG 327 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC
Confidence 466777778765 555666554 33344333333466799999998877653 3 477777776654 344333333
Q ss_pred EEEEEECCCCCcEEEEecCCCCCe--EEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecC
Q 011971 336 VKAIAWSPHLHGLLASGGGTADRC--IRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYS 399 (474)
Q Consensus 336 V~~l~~sp~~~~ll~sg~Gt~d~~--I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~ 399 (474)
-..-.|+|+|+.++.... .+|. |.+.|+.++..++.+........-.|.++++.++..++..
T Consensus 328 ~~~p~~SpdG~~i~~~~~--~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 328 NSNPVWSPDGDKIVFESS--SGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred CcCccCCCCCCEEEEEec--cCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC
Confidence 338899999998888763 3444 7777777776666666666667778899999988865433
No 337
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.18 E-value=1.9e-06 Score=86.79 Aligned_cols=241 Identities=16% Similarity=0.215 Sum_probs=155.6
Q ss_pred CCCEEEEEEcCCC--CEEEEEeCCCcEEEecCCCCe--EEEEecCCCCcEEEEEecC---CEEEEEe----CCCcEEEEE
Q 011971 208 DDSVCSVGWANRN--THLAVGTSHGKVQIWDASRCK--RVRTMEGHRLRVGALAWSS---SLLSSGS----RDKSILQRD 276 (474)
Q Consensus 208 ~~~V~~v~~sp~g--~~la~gs~dg~I~iwd~~~~~--~~~~~~~h~~~V~~l~~~~---~~l~sgs----~dg~I~iwd 276 (474)
...+.|+++.-+. ..+++|..+|.|-+-.+.... ......+|...+++++|++ +.|++|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4567788777543 488999999999998775432 2334567888999999985 5677763 356799999
Q ss_pred CcCCcc-eE--eeec-CcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEe
Q 011971 277 IRAQED-FV--SKLS-GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASG 352 (474)
Q Consensus 277 ~~~~~~-~~--~~~~-~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg 352 (474)
+.+.-. +. ..+. +......+++|..+.+++.+|.....+.++|++....... .-....|..+...|.....+++.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~-svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS-SVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh-hhhhhhcccceecCCCCCceecc
Confidence 987521 11 1111 2334456888988999999999999999999984321111 12344677788899666677765
Q ss_pred cCCCCCeEEEEEC-CCC-ceeeeec-----CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC--------ceeEEE
Q 011971 353 GGTADRCIRFWNT-TTN-THLSCMD-----TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM--------SKLATL 417 (474)
Q Consensus 353 ~Gt~d~~I~iwd~-~~~-~~~~~~~-----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~--------~~~~~l 417 (474)
.|+.|.+||. .+- ..+..+. ...++..++|+|...-++++.....+.|++||+..- .....+
T Consensus 215 ---~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~ 291 (783)
T KOG1008|consen 215 ---SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNY 291 (783)
T ss_pred ---ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeee
Confidence 5999999994 322 2222222 223599999999877666655667789999987421 011111
Q ss_pred c-----CCC---ccEEEEEECCCC--CEEEEEeCCCcEEEEeCCC
Q 011971 418 T-----GHT---FRVLYLAISPDG--QTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 418 ~-----~h~---~~V~~l~~spdg--~~l~t~s~Dg~I~iW~l~~ 452 (474)
. .|. ..|....|++.. +..+++....++.-+++..
T Consensus 292 ~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e 336 (783)
T KOG1008|consen 292 ESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE 336 (783)
T ss_pred cccccccccccccceeecCcCcCCccceeEEeeccCChhhccchh
Confidence 0 122 457777777643 3445555556666666554
No 338
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.00048 Score=72.21 Aligned_cols=201 Identities=12% Similarity=0.153 Sum_probs=129.1
Q ss_pred ceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCC-EEEEEEcCCCCEEEEEeCCC-----cEEEecCCCC--
Q 011971 169 YLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDS-VCSVGWANRNTHLAVGTSHG-----KVQIWDASRC-- 240 (474)
Q Consensus 169 ~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~-V~~v~~sp~g~~la~gs~dg-----~I~iwd~~~~-- 240 (474)
.+.|++-+.+.++.+..+|.|.+.+-.- +...-+. .+... |..+....+..+|++.+.|+ .|+||+++..
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~-~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSF-QLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccc-eeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 4666665556666666789988887532 2212222 22333 55554444446777766654 5899998643
Q ss_pred ----eEE---EEec----CCCCcEEEEEecC--CEEEEEeCCCcEEEEECc---CCcceEeeecCcCCCEEEEEEecCCC
Q 011971 241 ----KRV---RTME----GHRLRVGALAWSS--SLLSSGSRDKSILQRDIR---AQEDFVSKLSGHKSEVCGLKWSYDNR 304 (474)
Q Consensus 241 ----~~~---~~~~----~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~---~~~~~~~~~~~h~~~V~~l~~spd~~ 304 (474)
.++ +.+. ....++.+++.+. ..+++|-.+|.|..+.-+ .......-......+|+++.+..++.
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK 184 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence 333 2221 1345677888874 689999999999988432 11111222233467899999999988
Q ss_pred EEEEEeCCCcEEEEECCCCcce-EEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec
Q 011971 305 ELASGGNDNRLFVWNQHSTQPV-LKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (474)
Q Consensus 305 ~lasg~~Dg~v~iwd~~~~~~~-~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~ 375 (474)
.++.......|.+|.+....+. ..+..|...+.|..+++....+++++ +..|.+|+.........+.
T Consensus 185 s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~----~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 185 SVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG----SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred eeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec----CceEEEEcCCCcceeeeec
Confidence 7444444568999999854433 44778888999999998766566654 6789999988655555554
No 339
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.14 E-value=0.001 Score=65.32 Aligned_cols=212 Identities=13% Similarity=0.149 Sum_probs=131.2
Q ss_pred CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcC---C----CCEEEEEeC---------C-CcEEEecCCCC----eEEEE
Q 011971 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN---R----NTHLAVGTS---------H-GKVQIWDASRC----KRVRT 245 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp---~----g~~la~gs~---------d-g~I~iwd~~~~----~~~~~ 245 (474)
.+|+|.|..+.+.+..+.+.....+++++... + ..+|++|+. . |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 47899999999988888887677777765543 2 468888875 2 89999999884 22222
Q ss_pred e--cCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcce-EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011971 246 M--EGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDF-VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (474)
Q Consensus 246 ~--~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~ 322 (474)
+ ....++|.+++--.+.|+++. ++.|.+|++...... ..........+.++... ++++++|.....|.++..+.
T Consensus 82 i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEET
T ss_pred EEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEc
Confidence 2 245788999987766655554 478999999887722 22222233466666655 55999999888888775443
Q ss_pred -CcceEEEc--cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCC-------Cc----eeeeecCCCCeEEE---EE
Q 011971 323 -TQPVLKYC--EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-------NT----HLSCMDTGSQVCNL---VW 385 (474)
Q Consensus 323 -~~~~~~~~--~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~-------~~----~~~~~~~~~~v~~l---~~ 385 (474)
...+..+. .....+.++.+-+++. .++.+. .+|.|.++.... +. ....+..+..|+++ .+
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D--~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDED-TIIVGD--KDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEE--TTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCc-EEEEEc--CCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 22233332 2455688999987765 444443 799999887652 22 23445567788887 44
Q ss_pred cC--CCCe------EEEEEecCCCeEEEE
Q 011971 386 SK--NVNE------LVSTHGYSQNQIIVW 406 (474)
Q Consensus 386 s~--~~~~------l~~~~g~~dg~I~iw 406 (474)
.+ .+.. ++. ++.+|.|.+.
T Consensus 236 ~~~~~~~~~~~~~~i~~--~T~~G~Ig~l 262 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILY--GTVDGSIGVL 262 (321)
T ss_dssp S--SSSS-TTEEEEEEE--EETTS-EEEE
T ss_pred eecCCCCcccccceEEE--EecCCEEEEE
Confidence 45 2222 444 5678887743
No 340
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=0.00023 Score=68.39 Aligned_cols=234 Identities=12% Similarity=0.079 Sum_probs=135.2
Q ss_pred cceeeeeCCC-Cc--EEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEecCCCCeE-
Q 011971 168 FYLNLVDWSS-HN--VLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGKVQIWDASRCKR- 242 (474)
Q Consensus 168 ~~v~~l~~s~-~~--~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g-~~la~gs~dg~I~iwd~~~~~~- 242 (474)
..+..++++| .+ +..++.++.|.|.|+++..++..+.. ...+.+++|.-+. ++|..|..+|.|.|||+...+-
T Consensus 194 ~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a--~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~ 271 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA--YNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGP 271 (463)
T ss_pred hhhhhhccCccccceeeeeccCceEEEEecccceeeeheec--cCCceeeeeccCCcceeEEeccCceEEEEEccCCCch
Confidence 3577889998 33 45556799999999999998888864 3799999999765 6788888899999999975432
Q ss_pred EEEecC--CCCcEEEEEec--------CCEEEEEeCCCcEEEEECcCCcce-Ee-eecCcCCCEEEEEEecCCCEEEEEe
Q 011971 243 VRTMEG--HRLRVGALAWS--------SSLLSSGSRDKSILQRDIRAQEDF-VS-KLSGHKSEVCGLKWSYDNRELASGG 310 (474)
Q Consensus 243 ~~~~~~--h~~~V~~l~~~--------~~~l~sgs~dg~I~iwd~~~~~~~-~~-~~~~h~~~V~~l~~spd~~~lasg~ 310 (474)
+..+.+ ...+|..++.- +.+|+....+ ...|.+...... .. .-.+..+...++...+-.++++...
T Consensus 272 ~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~ty 349 (463)
T KOG1645|consen 272 LMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLTY 349 (463)
T ss_pred HhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEEe
Confidence 222221 22344444332 2344444333 344554332211 11 1112233444555555444444332
Q ss_pred CCC-------cE-EEEECCCCcceEEEc-cC-C------CcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee
Q 011971 311 NDN-------RL-FVWNQHSTQPVLKYC-EH-T------AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCM 374 (474)
Q Consensus 311 ~Dg-------~v-~iwd~~~~~~~~~~~-~h-~------~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~ 374 (474)
..+ .| ---|..+|.++...+ .+ . ..-.++.-.++...++..|+ ..+.+.+||..+++.++.+
T Consensus 350 Rs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd--~tn~lil~D~~s~evvQ~l 427 (463)
T KOG1645|consen 350 RSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGD--STNELILQDPHSFEVVQTL 427 (463)
T ss_pred cCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecC--CcceeEEeccchhheeeec
Confidence 210 01 011222333332211 11 0 01112223445555555554 7789999999999999999
Q ss_pred cCCCCeEEEEEcC-CC-CeEEEEEecCCCeEEEEECCC
Q 011971 375 DTGSQVCNLVWSK-NV-NELVSTHGYSQNQIIVWRYPT 410 (474)
Q Consensus 375 ~~~~~v~~l~~s~-~~-~~l~~~~g~~dg~I~iwd~~~ 410 (474)
....+|..++... ++ .+|++. .|..++||..++
T Consensus 428 ~~~epv~Dicp~~~n~~syLa~L---Td~~v~Iyk~es 462 (463)
T KOG1645|consen 428 ALSEPVLDICPNDTNGSSYLALL---TDDRVHIYKNES 462 (463)
T ss_pred ccCcceeecceeecCCcchhhhe---ecceEEEEecCC
Confidence 9998888887665 33 355543 578888887643
No 341
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.12 E-value=0.00045 Score=70.23 Aligned_cols=218 Identities=11% Similarity=0.091 Sum_probs=121.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC-CEEEEEeCCCcEEEE-ECcCCcceEe
Q 011971 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS-SLLSSGSRDKSILQR-DIRAQEDFVS 285 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~-~~l~sgs~dg~I~iw-d~~~~~~~~~ 285 (474)
......+.++|+|++++++ .+|...||.....+.... +.....+|.+ +.+++-...+.|.++ ++.... ..
T Consensus 32 ~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~--~k 103 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEV--VK 103 (443)
T ss_dssp SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-T--T-
T ss_pred CcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCccEEEEECCCeEEEEEcCcccc--ce
Confidence 3457899999999999985 578888888554444332 2344567764 778888888999996 443222 11
Q ss_pred eecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEEC
Q 011971 286 KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365 (474)
Q Consensus 286 ~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~ 365 (474)
.+.. ...+..|-. |..|+..+.+ .|.+||+.+++.+.++... +|+.+.|++++..+++.+ +..+.+++.
T Consensus 104 ~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----~~~i~il~~ 172 (443)
T PF04053_consen 104 SIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----KDSIYILKY 172 (443)
T ss_dssp -----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-----S-SEEEEEE
T ss_pred EEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe----CCeEEEEEe
Confidence 2211 112444432 8788877765 8999999999999988533 389999999988666654 567777775
Q ss_pred CCC-----------ceeeeecC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCC
Q 011971 366 TTN-----------THLSCMDT-GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDG 433 (474)
Q Consensus 366 ~~~-----------~~~~~~~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 433 (474)
... ..+..+.. ...|.+.+|..+ -.+++ ..+.|+- +..|+. ..+..-..++.=+.+.+..
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYt----T~~~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~ 244 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYT----TSNHLKY--LVNGET-GIIAHLDKPLYLLGYLPKE 244 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-----TTEEEE--EETTEE-EEEEE-SS--EEEEEETTT
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEE----cCCeEEE--EEcCCc-ceEEEcCCceEEEEEEccC
Confidence 433 02233332 678899999877 33333 2336655 333332 2222224456667788877
Q ss_pred CEEEEEeCCCcEEEEeCCC
Q 011971 434 QTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 434 ~~l~t~s~Dg~I~iW~l~~ 452 (474)
+.|+....|+.|..+.+..
T Consensus 245 ~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 245 NRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp TEEEEE-TT--EEEEE--H
T ss_pred CEEEEEECCCCEEEEEECH
Confidence 7899999999999888764
No 342
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.11 E-value=0.0006 Score=74.04 Aligned_cols=203 Identities=12% Similarity=0.132 Sum_probs=133.1
Q ss_pred CCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEEC----CC
Q 011971 249 HRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ----HS 322 (474)
Q Consensus 249 h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~----~~ 322 (474)
....|.++.|. ++.++.+..+|.|.+.|..+.. ......-...|.+++|+||+..++..+.+++|.+-+- -.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence 34688889886 5789999999999999887654 3444445678999999999999999998888776542 11
Q ss_pred C-------------------cceEEEccC---------------------CCcEEEEEECCCCCcEEEEecC-CCC-CeE
Q 011971 323 T-------------------QPVLKYCEH---------------------TAAVKAIAWSPHLHGLLASGGG-TAD-RCI 360 (474)
Q Consensus 323 ~-------------------~~~~~~~~h---------------------~~~V~~l~~sp~~~~ll~sg~G-t~d-~~I 360 (474)
. +.-..|.+. ...=..|.|-.||.++.+++-. -.+ +.|
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 1 111112110 0112358999999865554210 023 899
Q ss_pred EEEECCCCceeee-ecCCCCeEEEEEcCCCCeEEEEEe-cCCCeEEEEECCCC---ceeEEEcCCCccEEEEEECCCCCE
Q 011971 361 RFWNTTTNTHLSC-MDTGSQVCNLVWSKNVNELVSTHG-YSQNQIIVWRYPTM---SKLATLTGHTFRVLYLAISPDGQT 435 (474)
Q Consensus 361 ~iwd~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~~~~g-~~dg~I~iwd~~~~---~~~~~l~~h~~~V~~l~~spdg~~ 435 (474)
++||.. |..-.. ......-.+++|-|.|..+++.-. .+++.|.+|.-... +-...+......|..++|+.++..
T Consensus 225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdi 303 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDI 303 (1265)
T ss_pred EEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCc
Confidence 999977 433222 122344567999999999888632 24567888875322 112222223344899999999998
Q ss_pred EEE---EeCCCcEEEEeCCCCC
Q 011971 436 IVT---GAGDETLRFWNVFPSP 454 (474)
Q Consensus 436 l~t---~s~Dg~I~iW~l~~~~ 454 (474)
|++ ......|++|-+.+-.
T Consensus 304 LAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 304 LAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eeeeecccccceEEEEEecCeE
Confidence 887 4445559999987754
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.11 E-value=0.00069 Score=68.87 Aligned_cols=220 Identities=15% Similarity=0.177 Sum_probs=119.0
Q ss_pred CCcceeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEE
Q 011971 166 DDFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (474)
Q Consensus 166 ~d~~v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~ 244 (474)
.+++...+.++| +++++++.+|.-.|+.......... +.-....|...++ +|+-...+.|.|+.--+.+...
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~------G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF------GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE------EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-
T ss_pred CCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc------CceeEEEEecCcc-EEEEECCCeEEEEEcCccccce
Confidence 356788899999 8999999999999998554443221 3445688998554 6777778899996322222212
Q ss_pred EecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCC-
Q 011971 245 TMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHST- 323 (474)
Q Consensus 245 ~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~- 323 (474)
.+... ..+..|-. |.+|...+.+ .|.+||+.+.. .+..+... .|..+.|++++.+++..+.+ .++|++....
T Consensus 104 ~i~~~-~~~~~If~-G~LL~~~~~~-~i~~yDw~~~~-~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~ 176 (443)
T PF04053_consen 104 SIKLP-FSVEKIFG-GNLLGVKSSD-FICFYDWETGK-LIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEA 176 (443)
T ss_dssp ----S-S-EEEEE--SSSEEEEETT-EEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHH
T ss_pred EEcCC-cccceEEc-CcEEEEECCC-CEEEEEhhHcc-eeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchh
Confidence 22211 12333333 6666666555 89999999886 56666533 38999999999999998865 6777775432
Q ss_pred ----------cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEE
Q 011971 324 ----------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELV 393 (474)
Q Consensus 324 ----------~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~ 393 (474)
.....+..-...|++.+|..+ .++.+. ...|+. +-.|+.-.......++.-+.+.+..+.++
T Consensus 177 ~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT----~~~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly 248 (443)
T PF04053_consen 177 VAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT----SNHLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLY 248 (443)
T ss_dssp HHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-----TTEEEE--EETTEEEEEEE-SS--EEEEEETTTTEEE
T ss_pred cccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc----CCeEEE--EEcCCcceEEEcCCceEEEEEEccCCEEE
Confidence 133334333678999999976 455553 236666 34444333333345666666677666666
Q ss_pred EEEecCCCeEEEEECC
Q 011971 394 STHGYSQNQIIVWRYP 409 (474)
Q Consensus 394 ~~~g~~dg~I~iwd~~ 409 (474)
. -..++.|..+.+.
T Consensus 249 ~--~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 249 L--IDRDGNVISYELD 262 (443)
T ss_dssp E--E-TT--EEEEE--
T ss_pred E--EECCCCEEEEEEC
Confidence 6 4466666666553
No 344
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.07 E-value=0.0082 Score=57.37 Aligned_cols=224 Identities=17% Similarity=0.160 Sum_probs=134.0
Q ss_pred CcEEEEEcCCeEEEEeC-CCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE-----------
Q 011971 178 HNVLAVGLGNCVYLWNA-CSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT----------- 245 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~-~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~----------- 245 (474)
++.|++|.++.|++++. ......+... ...|..+...++-+.|++-+ |+.+.++++........
T Consensus 7 ~~~L~vGt~~Gl~~~~~~~~~~~~~i~~---~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 7 GDRLLVGTEDGLYVYDLSDPSKPTRILK---LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCEEEEEECCCEEEEEecCCccceeEee---cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 45556666555999999 4444444443 34499999999887777665 59999999865433321
Q ss_pred ---ecCCCCcEEEEE----ecCCEEEEEeCCCcEEEEECcCCc----ceEeeecCcCCCEEEEEEecCCCEEEEEeCCCc
Q 011971 246 ---MEGHRLRVGALA----WSSSLLSSGSRDKSILQRDIRAQE----DFVSKLSGHKSEVCGLKWSYDNRELASGGNDNR 314 (474)
Q Consensus 246 ---~~~h~~~V~~l~----~~~~~l~sgs~dg~I~iwd~~~~~----~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~ 314 (474)
.......+...+ ..+...+.......|.+|...... .....+ .-...+.+++|. ++.++.|..+ .
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~--~~~i~v~~~~-~ 158 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL--GNKICVGTSK-G 158 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe--CCEEEEEeCC-c
Confidence 112233455555 123344444445588888876531 123333 234778999998 5578887754 5
Q ss_pred EEEEECCCCcceEEEccC------------CCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee--eeecCCCCe
Q 011971 315 LFVWNQHSTQPVLKYCEH------------TAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL--SCMDTGSQV 380 (474)
Q Consensus 315 v~iwd~~~~~~~~~~~~h------------~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~--~~~~~~~~v 380 (474)
..+.|+.++.....+... ..++..+... ++. +|++ .|..-.+.|.. |+.. ..+.-...+
T Consensus 159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e-~Ll~----~~~~g~fv~~~-G~~~r~~~i~W~~~p 231 (275)
T PF00780_consen 159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNE-FLLC----YDNIGVFVNKN-GEPSRKSTIQWSSAP 231 (275)
T ss_pred eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-Cce-EEEE----ecceEEEEcCC-CCcCcccEEEcCCch
Confidence 888899876554333211 1234444444 334 4443 35555555653 4333 344445566
Q ss_pred EEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCC
Q 011971 381 CNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHT 421 (474)
Q Consensus 381 ~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~ 421 (474)
..+++. ..+|++. .++.|.||++.+++.++.+....
T Consensus 232 ~~~~~~--~pyli~~---~~~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 232 QSVAYS--SPYLIAF---SSNSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred hEEEEE--CCEEEEE---CCCEEEEEECcCCcEEEEEECCC
Confidence 666663 4566663 45779999999999998887544
No 345
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.07 E-value=0.011 Score=61.90 Aligned_cols=279 Identities=12% Similarity=0.078 Sum_probs=161.0
Q ss_pred CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEE----------EEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec
Q 011971 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCS----------VGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME 247 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~----------v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~ 247 (474)
+.+++++.++.|+-.|+.+|+..-..+......+.. +++ .+..+++++.+|.|.-+|..+++.+....
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 445555567888889999998766654322111111 122 23567788889999999999999887764
Q ss_pred C--CCC--cEE-EEEecCCEEEEEeC------CCcEEEEECcCCcceEeeecCc--------------------------
Q 011971 248 G--HRL--RVG-ALAWSSSLLSSGSR------DKSILQRDIRAQEDFVSKLSGH-------------------------- 290 (474)
Q Consensus 248 ~--h~~--~V~-~l~~~~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~h-------------------------- 290 (474)
. +.. .+. .-...++.++.+.. +|.|..+|.++++..-......
T Consensus 148 ~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~ 227 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDA 227 (527)
T ss_pred cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCc
Confidence 2 111 111 11122456666543 6889999998877432211110
Q ss_pred ----CCCEE-EEEEecCCCEEEEEeC-----CC-----------cEEEEECCCCcceEEEccCCC---------cEEEEE
Q 011971 291 ----KSEVC-GLKWSYDNRELASGGN-----DN-----------RLFVWNQHSTQPVLKYCEHTA---------AVKAIA 340 (474)
Q Consensus 291 ----~~~V~-~l~~spd~~~lasg~~-----Dg-----------~v~iwd~~~~~~~~~~~~h~~---------~V~~l~ 340 (474)
...+. .+.+.+...++..+.. ++ .|.-.|+++|+....++.... ...-+.
T Consensus 228 ~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d 307 (527)
T TIGR03075 228 WKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFD 307 (527)
T ss_pred cccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEE
Confidence 00111 2355665666665541 12 688889999998877764221 122233
Q ss_pred ECCCCC--cEEEEecCCCCCeEEEEECCCCceeeeec--------------CCCCe------------------------
Q 011971 341 WSPHLH--GLLASGGGTADRCIRFWNTTTNTHLSCMD--------------TGSQV------------------------ 380 (474)
Q Consensus 341 ~sp~~~--~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~--------------~~~~v------------------------ 380 (474)
+..+|+ .+++.+. .+|.+.+.|-.+|+.+.... .+.++
T Consensus 308 ~~~~G~~~~~v~~~~--K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~G 385 (527)
T TIGR03075 308 LKKDGKPRKLLAHAD--RNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLG 385 (527)
T ss_pred eccCCcEEEEEEEeC--CCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcC
Confidence 334554 4566654 89999999999998862210 00000
Q ss_pred ----EEEEEcCCCCeEEEEEec-------------------------------CCCeEEEEECCCCceeEEEcCCCccEE
Q 011971 381 ----CNLVWSKNVNELVSTHGY-------------------------------SQNQIIVWRYPTMSKLATLTGHTFRVL 425 (474)
Q Consensus 381 ----~~l~~s~~~~~l~~~~g~-------------------------------~dg~I~iwd~~~~~~~~~l~~h~~~V~ 425 (474)
..++++|+...+++-.+. .-+.|.-+|+.+++.+-..........
T Consensus 386 g~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~ 465 (527)
T TIGR03075 386 GKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWG 465 (527)
T ss_pred CCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCC
Confidence 114566665555542211 124577777777777665542221111
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCCCCC
Q 011971 426 YLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDS 461 (474)
Q Consensus 426 ~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~~~ 461 (474)
.. +.-.|.+++.++.||.++.+|..+++...+...
T Consensus 466 ~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 466 GV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred cc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 11 112455777888899999999999987655433
No 346
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.06 E-value=0.00014 Score=73.58 Aligned_cols=132 Identities=18% Similarity=0.180 Sum_probs=92.5
Q ss_pred eEEEEeCCCCCEEEEEecCCCCCEEEEEEcC-CCCEEEEE----eCCCc----EEEecCCCCeEEE--Ee-cCCCCcEEE
Q 011971 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-RNTHLAVG----TSHGK----VQIWDASRCKRVR--TM-EGHRLRVGA 255 (474)
Q Consensus 188 ~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp-~g~~la~g----s~dg~----I~iwd~~~~~~~~--~~-~~h~~~V~~ 255 (474)
.+.++....++...+.....+....++.|+- +...+.+. +.+|. -.+|++...+..+ .. -.....|.+
T Consensus 185 Nl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ 264 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVIC 264 (545)
T ss_pred cEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceE
Confidence 5666666666665555544455667888886 34444443 22443 3567776554222 11 146778999
Q ss_pred EEecC--CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011971 256 LAWSS--SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (474)
Q Consensus 256 l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~ 322 (474)
+++++ +.|+.|+.||.|.+||...+. .......-.++.++|+|+|..+++|+..|.+.+||+.-
T Consensus 265 ca~sp~E~kLvlGC~DgSiiLyD~~~~~---t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 265 CARSPSEDKLVLGCEDGSIILYDTTRGV---TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EecCcccceEEEEecCCeEEEEEcCCCe---eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 99985 799999999999999987653 22233445678999999999999999999999999753
No 347
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=4.1e-06 Score=87.12 Aligned_cols=162 Identities=17% Similarity=0.195 Sum_probs=124.5
Q ss_pred eEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCC-eEE
Q 011971 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR-CIR 361 (474)
Q Consensus 283 ~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~-~I~ 361 (474)
....+..|....+|++|+.+.++|+.|+..|.|+++++.+|........|+++|+.+.-+-+|..+|.+.. ... -..
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss--~S~Plsa 1170 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSS--SSSPLSA 1170 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecc--ccCchHH
Confidence 35567788899999999999999999999999999999999988888999999999999999997777664 333 567
Q ss_pred EEECCC-CceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEE-c---CCCccEEEEEECCCCCEE
Q 011971 362 FWNTTT-NTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATL-T---GHTFRVLYLAISPDGQTI 436 (474)
Q Consensus 362 iwd~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l-~---~h~~~V~~l~~spdg~~l 436 (474)
+|++.. +...+.+. .-.++.|+.....-++ |.......|||+.++.++.++ . +....-.+..|+|+..+|
T Consensus 1171 LW~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~--gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD---EDKAVKFSNSLQFRAL--GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred HhccccccCcccccc---ccceeehhhhHHHHHh--cccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 899864 33333333 3456778877666566 666778999999998887763 2 223334678899998877
Q ss_pred EEEeCCCcEEEEeCCCCCCC
Q 011971 437 VTGAGDETLRFWNVFPSPKS 456 (474)
Q Consensus 437 ~t~s~Dg~I~iW~l~~~~~~ 456 (474)
+ .||. +||+......
T Consensus 1246 l---ndGv--LWDvR~~~aI 1260 (1516)
T KOG1832|consen 1246 L---NDGV--LWDVRIPEAI 1260 (1516)
T ss_pred e---eCce--eeeeccHHHH
Confidence 6 5664 6998766443
No 348
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=0.00016 Score=75.30 Aligned_cols=257 Identities=11% Similarity=0.151 Sum_probs=142.7
Q ss_pred cceeeeeCCC-CcEEEEEcC-CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE
Q 011971 168 FYLNLVDWSS-HNVLAVGLG-NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 168 ~~v~~l~~s~-~~~la~~~d-~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~ 245 (474)
+.+.+++|+| .-+|+.|.+ |.+.+|...+.+...+. ..|..+|..+.||++|..|.++..-|.|.+|....-..+..
T Consensus 60 ~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~-~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~ 138 (1416)
T KOG3617|consen 60 VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV-ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQT 138 (1416)
T ss_pred eehhhhccChHHHHHhhccccceeEEEecCCceeeeec-cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccccc
Confidence 4467799999 567777764 78999999887765544 48999999999999999999999999999998763322222
Q ss_pred e--cCCC--CcEEEEEec--C--------CEEEEEeCCCcEE-EEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEe
Q 011971 246 M--EGHR--LRVGALAWS--S--------SLLSSGSRDKSIL-QRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG 310 (474)
Q Consensus 246 ~--~~h~--~~V~~l~~~--~--------~~l~sgs~dg~I~-iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~ 310 (474)
. -.|. ..++-++|. . ...++.+.+..+- .++.+... ...-..|. =.|+|..+..++
T Consensus 139 ~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~--a~rs~~ks-------gv~~g~~F~~~~ 209 (1416)
T KOG3617|consen 139 SNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESL--AERSDEKS-------GVPKGTEFLFAG 209 (1416)
T ss_pred chhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccch--hhcccccc-------CCCCCcEEEEEc
Confidence 1 1222 233334442 1 1233333333221 22222111 00000111 136788889999
Q ss_pred CCCcEEEEECCCCcceEEEcc----------CCCcEEEEE-ECCCCCcEEEEec---------------CCCCCeEEEEE
Q 011971 311 NDNRLFVWNQHSTQPVLKYCE----------HTAAVKAIA-WSPHLHGLLASGG---------------GTADRCIRFWN 364 (474)
Q Consensus 311 ~Dg~v~iwd~~~~~~~~~~~~----------h~~~V~~l~-~sp~~~~ll~sg~---------------Gt~d~~I~iwd 364 (474)
.+|+|+..|-. ++.....+. ...+|.++. +..+ ..+++-.- |...|.|-+=.
T Consensus 210 ~~GtVyyvdq~-g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~-~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sE 287 (1416)
T KOG3617|consen 210 KSGTVYYVDQN-GRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRD-CLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSE 287 (1416)
T ss_pred CCceEEEEcCC-CcEEEEEEccchHHHHHhcccceEEEEeeecee-eEEEecCCCchHHhhhhhhccccCCccCcccccc
Confidence 99999998854 322222211 112222211 1111 00000000 00111111111
Q ss_pred CC---CCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC-------ceeEEEcC---CCccEEEEEECC
Q 011971 365 TT---TNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM-------SKLATLTG---HTFRVLYLAISP 431 (474)
Q Consensus 365 ~~---~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-------~~~~~l~~---h~~~V~~l~~sp 431 (474)
.. .......+..+..+.+++++..+..|.. |...|.+.+|.-... .-...+.+ ..+.|..+.|.|
T Consensus 288 ssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~a--gt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~ 365 (1416)
T KOG3617|consen 288 SSGVLRKSEKYGLELGEGILCMCYGEKEIRLWA--GTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGP 365 (1416)
T ss_pred ccccccCCcchhhhcCCceEEEEEeccceEEEe--cccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEecc
Confidence 00 0111222335677999999999998888 889999999964321 22333333 456799999988
Q ss_pred CCCEEEE
Q 011971 432 DGQTIVT 438 (474)
Q Consensus 432 dg~~l~t 438 (474)
--..++.
T Consensus 366 ~k~~~av 372 (1416)
T KOG3617|consen 366 IKSTAAV 372 (1416)
T ss_pred ccchhhh
Confidence 5444443
No 349
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.00 E-value=0.015 Score=59.27 Aligned_cols=242 Identities=9% Similarity=0.039 Sum_probs=132.3
Q ss_pred EEEEEEcCCCCEEEEEeC-CC----cEEEecCCCCeEEEEecCCCCcEEEEEecC--CEEEEEeCCC-----------cE
Q 011971 211 VCSVGWANRNTHLAVGTS-HG----KVQIWDASRCKRVRTMEGHRLRVGALAWSS--SLLSSGSRDK-----------SI 272 (474)
Q Consensus 211 V~~v~~sp~g~~la~gs~-dg----~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg-----------~I 272 (474)
+..+.++|+|++||.+-. .| .|+++|+++++.+...-.. .....+.|.+ ..|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 345788999999987633 33 5999999999876543111 1122389974 3554443322 37
Q ss_pred EEEECcCCcce-EeeecCcCC-C-EEEEEEecCCCEEEEEeC---C-CcEEEEECCCC----cceEEEccCCCcE-EEEE
Q 011971 273 LQRDIRAQEDF-VSKLSGHKS-E-VCGLKWSYDNRELASGGN---D-NRLFVWNQHST----QPVLKYCEHTAAV-KAIA 340 (474)
Q Consensus 273 ~iwd~~~~~~~-~~~~~~h~~-~-V~~l~~spd~~~lasg~~---D-g~v~iwd~~~~----~~~~~~~~h~~~V-~~l~ 340 (474)
+.|.+.+.... ...+..... . ...+..++|+++|+.... + ..+++.|+..+ .....+......+ ..+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888776532 233333222 2 678899999999876433 2 45888898874 2333333333333 3344
Q ss_pred ECCCCCcEEEEecCCCCCeEEEEECCCCce---e-eeecCCCCeEEEEEcCCCCeEEEEEecC--CCeEEEEECCCCcee
Q 011971 341 WSPHLHGLLASGGGTADRCIRFWNTTTNTH---L-SCMDTGSQVCNLVWSKNVNELVSTHGYS--QNQIIVWRYPTMSKL 414 (474)
Q Consensus 341 ~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~---~-~~~~~~~~v~~l~~s~~~~~l~~~~g~~--dg~I~iwd~~~~~~~ 414 (474)
.. .+..++.+..+...+.|.-.++..... . ..+.+...+.-..+...+.+|++. ... ...|+++++..+...
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~-~~~~~~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLS-YRENGSSRLRVYDLDDGKES 362 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEE-EEETTEEEEEEEETT-TEEE
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEE-EEECCccEEEEEECCCCcEE
Confidence 44 444455555444667888888887663 2 233334433333344456666653 223 347889999834444
Q ss_pred EEEc-CCCccEEEEEECCCCCEEE-EEeC---CCcEEEEeCCCCCC
Q 011971 415 ATLT-GHTFRVLYLAISPDGQTIV-TGAG---DETLRFWNVFPSPK 455 (474)
Q Consensus 415 ~~l~-~h~~~V~~l~~spdg~~l~-t~s~---Dg~I~iW~l~~~~~ 455 (474)
..+. .-.+.|..+...+++..+. +.+. -++++-||+.++..
T Consensus 363 ~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 363 REIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred eeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 4443 2344466666556555433 3222 25677788777653
No 350
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.97 E-value=0.00067 Score=68.69 Aligned_cols=200 Identities=17% Similarity=0.200 Sum_probs=119.2
Q ss_pred EEEecCCCCeEEEEecCCCCcEEEEEecC--CE---EEEEeCC-CcEEEEECcCCcce-EeeecCcCCCEEEEEEecCCC
Q 011971 232 VQIWDASRCKRVRTMEGHRLRVGALAWSS--SL---LSSGSRD-KSILQRDIRAQEDF-VSKLSGHKSEVCGLKWSYDNR 304 (474)
Q Consensus 232 I~iwd~~~~~~~~~~~~h~~~V~~l~~~~--~~---l~sgs~d-g~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~spd~~ 304 (474)
+.+-|.. +.....+......+..-+|++ .. +..-... ..+.++|+.++... +..+.++ -....|+|||+
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~---~~~P~fspDG~ 250 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN---NGAPAFSPDGS 250 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc---cCCccCCCCCC
Confidence 3444433 444444544455566666763 22 2112222 46999999887632 2333333 34557999999
Q ss_pred EEEEEe-CCC--cEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCe--EEEEECCCCceeeeecCCCC
Q 011971 305 ELASGG-NDN--RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRC--IRFWNTTTNTHLSCMDTGSQ 379 (474)
Q Consensus 305 ~lasg~-~Dg--~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~--I~iwd~~~~~~~~~~~~~~~ 379 (474)
.|+... .|| .|++.|+...+ ...+....+.-..-.|+|+|+.++.+.. ..|. |.++|...+...........
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sd--r~G~p~I~~~~~~g~~~~riT~~~~~ 327 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSD--RGGRPQIYLYDLEGSQVTRLTFSGGG 327 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeC--CCCCcceEEECCCCCceeEeeccCCC
Confidence 887654 344 47788888776 3345444444447789999999988865 3444 66777776665333333333
Q ss_pred eEEEEEcCCCCeEEEEEecCCCe--EEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEe
Q 011971 380 VCNLVWSKNVNELVSTHGYSQNQ--IIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGA 440 (474)
Q Consensus 380 v~~l~~s~~~~~l~~~~g~~dg~--I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s 440 (474)
-..-.|+|+|++++... ..+|. |.+.|+.++..+..+. +......-.|.++|..|+..+
T Consensus 328 ~~~p~~SpdG~~i~~~~-~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 328 NSNPVWSPDGDKIVFES-SSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CcCccCCCCCCEEEEEe-ccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence 33888999999999974 34555 6677776665433332 233333455667776665433
No 351
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.95 E-value=0.00071 Score=72.56 Aligned_cols=141 Identities=16% Similarity=0.124 Sum_probs=104.1
Q ss_pred CEEEEE-eCCCcEEEecCCCCeEEEEecCCCCc-EEEEEec-------CCEEEEEeCCCcEEEEECcCCcceEeeec---
Q 011971 221 THLAVG-TSHGKVQIWDASRCKRVRTMEGHRLR-VGALAWS-------SSLLSSGSRDKSILQRDIRAQEDFVSKLS--- 288 (474)
Q Consensus 221 ~~la~g-s~dg~I~iwd~~~~~~~~~~~~h~~~-V~~l~~~-------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--- 288 (474)
++|+.- .....|+-.|++.|+.+.....|... |..++-. +...+.|-.+..+..||.|.....+..-.
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 444433 34567999999999999999877654 7777653 35678888899999999997642222111
Q ss_pred -CcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECC
Q 011971 289 -GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (474)
Q Consensus 289 -~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~ 366 (474)
.......|++-+.+| +||+|+.+|.|++||--..+....+.+-..+|..|..+.||+++|+++ +..|.++++.
T Consensus 574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc----~tyLlLi~t~ 647 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC----KTYLLLIDTL 647 (794)
T ss_pred cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee----cceEEEEEEe
Confidence 234557777776666 899999999999999543333344556688999999999999999986 7888888853
No 352
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.91 E-value=0.0079 Score=55.07 Aligned_cols=143 Identities=11% Similarity=0.095 Sum_probs=97.4
Q ss_pred CCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEe-cCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEE
Q 011971 220 NTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAW-SSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLK 298 (474)
Q Consensus 220 g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 298 (474)
..+++.|+..+.+.-.|..+++.+..-. -..++.+-+. -++.++.|+..|.+++.+..++.+.........-. +...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk-~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK-VRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhhc-cceE
Confidence 4678889999999999999988765532 2234443333 47889999999999999999987433322211111 2334
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECC-CCCcEEEEecCCCCCeEEEEECCCC
Q 011971 299 WSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP-HLHGLLASGGGTADRCIRFWNTTTN 368 (474)
Q Consensus 299 ~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp-~~~~ll~sg~Gt~d~~I~iwd~~~~ 368 (474)
..+++..+..|+.|+..+..|.++...+++.+...+...+-+..| ++. |+++. ..|.+.--+...+
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~---t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAI---TAGAVLAVTKNPY 167 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCce-EEEEe---ccceEEEEccCCC
Confidence 567899999999999999999999999988766555555566666 444 44433 3444444444433
No 353
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.91 E-value=0.007 Score=57.86 Aligned_cols=223 Identities=12% Similarity=0.115 Sum_probs=123.7
Q ss_pred CCCCEEEEEeCCCcEEEecCCC-CeEEEEecCCCCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcceEee--------
Q 011971 218 NRNTHLAVGTSHGKVQIWDASR-CKRVRTMEGHRLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDFVSK-------- 286 (474)
Q Consensus 218 p~g~~la~gs~dg~I~iwd~~~-~~~~~~~~~h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~-------- 286 (474)
..++.|++|+.+| |.++++.. .+...... ...|..+...+ +.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578999999998 89999833 33333222 22388888875 4555444 499999998764422210
Q ss_pred -----ecCcCCCEEEEE--EecCCCEEEEEeCCCcEEEEECCCC-----cceEEEccCCCcEEEEEECCCCCcEEEEecC
Q 011971 287 -----LSGHKSEVCGLK--WSYDNRELASGGNDNRLFVWNQHST-----QPVLKYCEHTAAVKAIAWSPHLHGLLASGGG 354 (474)
Q Consensus 287 -----~~~h~~~V~~l~--~spd~~~lasg~~Dg~v~iwd~~~~-----~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~G 354 (474)
.......+...+ -...+...++......|.+|..... +...++ .-...+..++|..+ .++.|
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~~~---~i~v~-- 154 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFLGN---KICVG-- 154 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEeCC---EEEEE--
Confidence 111223344444 1123333333444458888887653 344454 34578899999943 44444
Q ss_pred CCCCeEEEEECCCCceeeeecCCC------------CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeE--EEcCC
Q 011971 355 TADRCIRFWNTTTNTHLSCMDTGS------------QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLA--TLTGH 420 (474)
Q Consensus 355 t~d~~I~iwd~~~~~~~~~~~~~~------------~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~--~l~~h 420 (474)
..+...+.|+.++.......... ....+.--+++.+|++ .++.-.+.|. .|+... .+. -
T Consensus 155 -~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~----~~~~g~fv~~-~G~~~r~~~i~-W 227 (275)
T PF00780_consen 155 -TSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLC----YDNIGVFVNK-NGEPSRKSTIQ-W 227 (275)
T ss_pred -eCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEE----ecceEEEEcC-CCCcCcccEEE-c
Confidence 25668899999776654433211 1222222233444544 2333333333 333322 222 1
Q ss_pred CccEEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCCCCC
Q 011971 421 TFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTD 460 (474)
Q Consensus 421 ~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~~~~~~~~ 460 (474)
.....++++ ...+|+..+. +.|.||++.++...|...
T Consensus 228 ~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 228 SSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred CCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 234556666 3457877665 559999999997766544
No 354
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.90 E-value=0.0046 Score=61.55 Aligned_cols=228 Identities=17% Similarity=0.183 Sum_probs=126.8
Q ss_pred ceeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecCC----------------CCCEEEEEEcCCCCEEEEEeCC-C
Q 011971 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGI----------------DDSVCSVGWANRNTHLAVGTSH-G 230 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~~----------------~~~V~~v~~sp~g~~la~gs~d-g 230 (474)
.+....|+| ++.++...++.|++++..+++..++..-+. -+.-..+.|||||++||....| .
T Consensus 44 ~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~ 123 (353)
T PF00930_consen 44 KLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDER 123 (353)
T ss_dssp TBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-T
T ss_pred ccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCc
Confidence 467788999 889999999999999998886666554230 1123568899999999876543 2
Q ss_pred cEE-----------------------------------EecCCCCeEE--EEe---cCCCCcEEEEEecC--CEEEE--E
Q 011971 231 KVQ-----------------------------------IWDASRCKRV--RTM---EGHRLRVGALAWSS--SLLSS--G 266 (474)
Q Consensus 231 ~I~-----------------------------------iwd~~~~~~~--~~~---~~h~~~V~~l~~~~--~~l~s--g 266 (474)
.|. |+|+.+++.. ... ..-..-+..+.|.+ ..|+. .
T Consensus 124 ~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~ 203 (353)
T PF00930_consen 124 EVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWL 203 (353)
T ss_dssp TS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEE
T ss_pred CCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEc
Confidence 222 2333333221 111 11233456666652 21332 2
Q ss_pred eCCC---cEEEEECcCCcceEeeecCcCC---CEEEEEEe-cCCC-EEEEEeCCCc--EEEEECCCCcceEEEccCCCcE
Q 011971 267 SRDK---SILQRDIRAQEDFVSKLSGHKS---EVCGLKWS-YDNR-ELASGGNDNR--LFVWNQHSTQPVLKYCEHTAAV 336 (474)
Q Consensus 267 s~dg---~I~iwd~~~~~~~~~~~~~h~~---~V~~l~~s-pd~~-~lasg~~Dg~--v~iwd~~~~~~~~~~~~h~~~V 336 (474)
.++. .+.++|..++...+........ .-..+.|. +++. +|.....||- |++++...+. ...+....-.|
T Consensus 204 nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V 282 (353)
T PF00930_consen 204 NRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEV 282 (353)
T ss_dssp ETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-E
T ss_pred ccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceee
Confidence 3332 2455566554322111111111 12244454 5554 4444456664 6666666555 34555556667
Q ss_pred -EEEEECCCCCcEEEEecCC--CCCeEEEEECCCCceeeeecCCCCeE-EEEEcCCCCeEEEEEe
Q 011971 337 -KAIAWSPHLHGLLASGGGT--ADRCIRFWNTTTNTHLSCMDTGSQVC-NLVWSKNVNELVSTHG 397 (474)
Q Consensus 337 -~~l~~sp~~~~ll~sg~Gt--~d~~I~iwd~~~~~~~~~~~~~~~v~-~l~~s~~~~~l~~~~g 397 (474)
..+.|++++..++.++.+. ....|...++..+..+.++....... .+.|||++++++..+.
T Consensus 283 ~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 283 TSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred cccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 4578899988888887531 24467777777345556666555444 9999999999998643
No 355
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.80 E-value=0.035 Score=58.27 Aligned_cols=241 Identities=15% Similarity=0.110 Sum_probs=137.5
Q ss_pred CCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcC--CCCEEEEEeC------CCcEEEecCCCCeEEEEecC
Q 011971 177 SHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN--RNTHLAVGTS------HGKVQIWDASRCKRVRTMEG 248 (474)
Q Consensus 177 ~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp--~g~~la~gs~------dg~I~iwd~~~~~~~~~~~~ 248 (474)
.+.++++..++.|+-.|+.+|+..-.........-..+.-+| .+..++++.. +|.|..+|.++++.+-.+..
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 456777778999999999999987655432111000111112 1335666543 68999999999998876542
Q ss_pred CCC-------------------------------cEE-EEEecC--CEEEEEeCC-----C-----------cEEEEECc
Q 011971 249 HRL-------------------------------RVG-ALAWSS--SLLSSGSRD-----K-----------SILQRDIR 278 (474)
Q Consensus 249 h~~-------------------------------~V~-~l~~~~--~~l~sgs~d-----g-----------~I~iwd~~ 278 (474)
-.. .++ .+++++ ++++.+..+ + .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 110 111 123332 455555422 2 56777888
Q ss_pred CCcceEeeec--CcC-------CCEEEEEEecCCC---EEEEEeCCCcEEEEECCCCcceEEEc--c----------CC-
Q 011971 279 AQEDFVSKLS--GHK-------SEVCGLKWSYDNR---ELASGGNDNRLFVWNQHSTQPVLKYC--E----------HT- 333 (474)
Q Consensus 279 ~~~~~~~~~~--~h~-------~~V~~l~~spd~~---~lasg~~Dg~v~iwd~~~~~~~~~~~--~----------h~- 333 (474)
+++. .-.++ .|. ....-+.+..+|+ .++.+..+|.+++.|.++++++.... . ..
T Consensus 280 TG~~-~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g 358 (527)
T TIGR03075 280 TGKI-KWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTG 358 (527)
T ss_pred cCCE-EEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCC
Confidence 7763 22222 221 1112222334665 77899999999999999998752110 0 00
Q ss_pred CcE----------------------------EEEEECCCCCcEEEEecC------------------------------C
Q 011971 334 AAV----------------------------KAIAWSPHLHGLLASGGG------------------------------T 355 (474)
Q Consensus 334 ~~V----------------------------~~l~~sp~~~~ll~sg~G------------------------------t 355 (474)
.++ ..++++|+...+++-..- .
T Consensus 359 ~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~ 438 (527)
T TIGR03075 359 RPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDD 438 (527)
T ss_pred CCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCC
Confidence 000 124556654433322110 0
Q ss_pred CCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCC
Q 011971 356 ADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH 420 (474)
Q Consensus 356 ~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h 420 (474)
.-+.|.-+|+.+++.+...........-...-.+..+++ +..+|.++.+|..+++.+.++...
T Consensus 439 ~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~--g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 439 HMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFY--GTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEE--ECCCCeEEEEECCCCCEeEEEeCC
Confidence 125688889999988877765443221112224445555 778999999999999999888643
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.79 E-value=0.024 Score=57.47 Aligned_cols=192 Identities=13% Similarity=0.109 Sum_probs=102.7
Q ss_pred cEEEecCCCCeEEEEecCCCCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcce-----EeeecCcCCCEEEEEEecCCC
Q 011971 231 KVQIWDASRCKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDF-----VSKLSGHKSEVCGLKWSYDNR 304 (474)
Q Consensus 231 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~-----~~~~~~h~~~V~~l~~spd~~ 304 (474)
.|+||+.. |+.+..+.-..+.+.++.|+ ...|++...||.++++|+....+. +....-....+....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G- 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG- 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC-
Confidence 48888854 55666655334899999998 578999999999999998633200 10011111112222333344
Q ss_pred EEEEEeCCCcEEEEECCCCc-ceEEEcc----------CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee
Q 011971 305 ELASGGNDNRLFVWNQHSTQ-PVLKYCE----------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSC 373 (474)
Q Consensus 305 ~lasg~~Dg~v~iwd~~~~~-~~~~~~~----------h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~ 373 (474)
++.-..++.+++..--... ....+.. +........++.+....+... .++.+.+.+-...+ .
T Consensus 140 -ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~---~g~~i~~i~~~~~~---~ 212 (410)
T PF04841_consen 140 -IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLA---NGETIYIIDENSFK---Q 212 (410)
T ss_pred -EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEe---cCCEEEEEEccccc---c
Confidence 2322334555544322211 1111110 000000022333333222222 34455534332221 1
Q ss_pred ecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCC-CccEEEEEECCCC
Q 011971 374 MDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGH-TFRVLYLAISPDG 433 (474)
Q Consensus 374 ~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg 433 (474)
+...+++..++.||++++++.. ..+|.+.|....-.+.+.++... ......+.|.-+.
T Consensus 213 i~~~~~i~~iavSpng~~iAl~--t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 213 IDSDGPIIKIAVSPNGKFIALF--TDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred ccCCCCeEEEEECCCCCEEEEE--ECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 3345689999999999999985 46789988887666666666543 3456677776554
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.061 Score=54.12 Aligned_cols=219 Identities=13% Similarity=0.081 Sum_probs=147.1
Q ss_pred CCEEEEEEcCCCCEEEE-EeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeC---CCcEEEEECcCCcc
Q 011971 209 DSVCSVGWANRNTHLAV-GTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSR---DKSILQRDIRAQED 282 (474)
Q Consensus 209 ~~V~~v~~sp~g~~la~-gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~---dg~I~iwd~~~~~~ 282 (474)
..-..++.++.+..+++ ...+..|.+.|..+.+......--. ....++++ ++.+..+.. ++.+.+.|..+...
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 44567888888875544 4446899999988777766654222 44455665 445544444 68888888877763
Q ss_pred eEeeecCcCCCEEEEEEecCCCEEEEEe-CCCcEEEEECCCCcceE-E---EccCCCcEEEEEECCCCCcEEEEecCCCC
Q 011971 283 FVSKLSGHKSEVCGLKWSYDNRELASGG-NDNRLFVWNQHSTQPVL-K---YCEHTAAVKAIAWSPHLHGLLASGGGTAD 357 (474)
Q Consensus 283 ~~~~~~~h~~~V~~l~~spd~~~lasg~-~Dg~v~iwd~~~~~~~~-~---~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d 357 (474)
... ...-..+ ..++++|+|+.+.... .++.|.+.|........ . ...-......+++.|++..+.+...++.+
T Consensus 153 ~~~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 153 TAT-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEE-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 333 3222233 8999999999766655 78999999976654442 1 01122334678999999988888764445
Q ss_pred CeEEEEECCCCceeee-ecCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCc---cEEEEEECC
Q 011971 358 RCIRFWNTTTNTHLSC-MDTGS-QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTF---RVLYLAISP 431 (474)
Q Consensus 358 ~~I~iwd~~~~~~~~~-~~~~~-~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~---~V~~l~~sp 431 (474)
+.+...|..++..... ..... +...+..+|+|+.+.+... ..+.+.+-|..+......+..... .+..+++.+
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~-~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS-QGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec-CCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 7999999999887765 22222 6788999999999999643 468899999888777766543322 344455544
No 358
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.72 E-value=0.027 Score=52.70 Aligned_cols=196 Identities=13% Similarity=0.208 Sum_probs=112.5
Q ss_pred EecCCCCcEEEEEecC---CEEEEEeCCCcEEEEECcCCcceEeeecCc-CCCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011971 245 TMEGHRLRVGALAWSS---SLLSSGSRDKSILQRDIRAQEDFVSKLSGH-KSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (474)
Q Consensus 245 ~~~~h~~~V~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~spd~~~lasg~~Dg~v~iwd~ 320 (474)
.+.+-...+..|+|++ .++++....+.|..++.. ++ .+..+.-. .+...+|++..++.++++--.++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~-vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK-VLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC-EEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 4556666799999985 367777788888888864 33 44444322 467889999888877776666899999998
Q ss_pred CCCc------ceEEEc-----cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCC---Cceeeee-----c----CC
Q 011971 321 HSTQ------PVLKYC-----EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT---NTHLSCM-----D----TG 377 (474)
Q Consensus 321 ~~~~------~~~~~~-----~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~---~~~~~~~-----~----~~ 377 (474)
.... ....+. .++..+..++|+|.+..|+++- +..-..+|.+.. ...+... . .-
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceeecccccccccccee
Confidence 4321 111221 2456789999999988888765 344455555443 2221111 1 23
Q ss_pred CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCC---------ccEEEEEECCCCCEEEEEeCCCcEEEE
Q 011971 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHT---------FRVLYLAISPDGQTIVTGAGDETLRFW 448 (474)
Q Consensus 378 ~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~---------~~V~~l~~spdg~~l~t~s~Dg~I~iW 448 (474)
..+..+.++|....|++. ......|.++| .+++.+..+.-.. ..--.|+|.++|.+. ..++-+..+++
T Consensus 171 ~d~S~l~~~p~t~~lliL-S~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpNlfy~f 247 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLIL-SDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPNLFYRF 247 (248)
T ss_dssp S---EEEEETTTTEEEEE-ETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETTTEEEEE
T ss_pred ccccceEEcCCCCeEEEE-ECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCCceEEEe
Confidence 458899999988777776 66888999999 6777766554221 246789999999644 45566655554
No 359
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.69 E-value=0.026 Score=52.69 Aligned_cols=194 Identities=12% Similarity=0.113 Sum_probs=127.7
Q ss_pred CcccccCCCCCCCcceeeeeC-CCCcEEEE-EcCC--eEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 011971 155 PYKILDAPALQDDFYLNLVDW-SSHNVLAV-GLGN--CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG 230 (474)
Q Consensus 155 p~~~l~ap~~~~d~~v~~l~~-s~~~~la~-~~d~--~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg 230 (474)
.++++..-......+...+.+ ..+.++-+ |.-| .|+.+|..++++.....+...----.++... ++.....-.++
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~ 110 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSS
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCC
Confidence 456666654555677888888 44444333 3333 8999999999998888775443333444443 33444456689
Q ss_pred cEEEecCCCCeEEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecC-----cCCCEEEEEEecCCCE
Q 011971 231 KVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSG-----HKSEVCGLKWSYDNRE 305 (474)
Q Consensus 231 ~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-----h~~~V~~l~~spd~~~ 305 (474)
...+||..+.+.+.++.- .+.=+.|+.+++.|+.......|..+|..+.+. ...+.- .-..++-|.|- +|..
T Consensus 111 ~~f~yd~~tl~~~~~~~y-~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~-~~~i~V~~~g~pv~~LNELE~i-~G~I 187 (264)
T PF05096_consen 111 TGFVYDPNTLKKIGTFPY-PGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKE-VRTIQVTDNGRPVSNLNELEYI-NGKI 187 (264)
T ss_dssp EEEEEETTTTEEEEEEE--SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SE-EEEEE-EETTEE---EEEEEEE-TTEE
T ss_pred eEEEEccccceEEEEEec-CCcceEEEcCCCEEEEECCccceEEECCcccce-EEEEEEEECCEECCCcEeEEEE-cCEE
Confidence 999999999999988863 356678888888888888888999999877552 222221 12346677775 6777
Q ss_pred EEEEeCCCcEEEEECCCCcceEEEcc------------C---CCcEEEEEECCCCCcEEEEe
Q 011971 306 LASGGNDNRLFVWNQHSTQPVLKYCE------------H---TAAVKAIAWSPHLHGLLASG 352 (474)
Q Consensus 306 lasg~~Dg~v~iwd~~~~~~~~~~~~------------h---~~~V~~l~~sp~~~~ll~sg 352 (474)
.|-.-....|...|..+|+.+..+.. + ..-.+.|||.|....++++|
T Consensus 188 yANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 188 YANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 77777788899999999988776531 1 34689999999999999997
No 360
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.68 E-value=0.0096 Score=59.78 Aligned_cols=185 Identities=13% Similarity=0.128 Sum_probs=104.7
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEe--cC------CCCcEEEEEec-----C-----CEEEEEeCC
Q 011971 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTM--EG------HRLRVGALAWS-----S-----SLLSSGSRD 269 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~--~~------h~~~V~~l~~~-----~-----~~l~sgs~d 269 (474)
.++|++++.|.-| ++|+|..+|.+.|.|+.....+..- .. ....|+++.|. + -.+++|...
T Consensus 86 ~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 86 QGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 6899999998544 8999999999999999888777652 22 34568888885 1 378999999
Q ss_pred CcEEEEECcC--Ccce----EeeecCcCCCEEEEE-EecC--------------------CCEEEEEeCCCcEEEEECCC
Q 011971 270 KSILQRDIRA--QEDF----VSKLSGHKSEVCGLK-WSYD--------------------NRELASGGNDNRLFVWNQHS 322 (474)
Q Consensus 270 g~I~iwd~~~--~~~~----~~~~~~h~~~V~~l~-~spd--------------------~~~lasg~~Dg~v~iwd~~~ 322 (474)
|.+.+|.+.- .... ......+.+.|..|. ++.+ -..+++...+..++|+...+
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~ 244 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK 244 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence 9999998752 1211 222234566666665 3221 01244444567899999988
Q ss_pred CcceEEEccCCCcEEEEEECC----CCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC-----CeEEEEEcCCCCeEE
Q 011971 323 TQPVLKYCEHTAAVKAIAWSP----HLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGS-----QVCNLVWSKNVNELV 393 (474)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp----~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~-----~v~~l~~s~~~~~l~ 393 (474)
.+..++..........+.+-+ .+...|++-. .+|.|++|.+-.-+.+..+.... .+....++++|..++
T Consensus 245 ~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~--~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~ 322 (395)
T PF08596_consen 245 SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF--NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFY 322 (395)
T ss_dssp --EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE--TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEE
T ss_pred CcccceeeccccccceEEEEeecccCCceEEEEEE--CCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEE
Confidence 877766554333444445531 1223344333 69999999999988887776432 234566677777666
Q ss_pred EE
Q 011971 394 ST 395 (474)
Q Consensus 394 ~~ 395 (474)
.+
T Consensus 323 ~~ 324 (395)
T PF08596_consen 323 WT 324 (395)
T ss_dssp E-
T ss_pred Ee
Confidence 53
No 361
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.62 E-value=0.0062 Score=59.78 Aligned_cols=141 Identities=16% Similarity=0.220 Sum_probs=96.4
Q ss_pred CcEEEEEcC-----------CeEEEEeCCCC-----CEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe
Q 011971 178 HNVLAVGLG-----------NCVYLWNACSS-----KVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (474)
Q Consensus 178 ~~~la~~~d-----------~~V~lwd~~~~-----~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~ 241 (474)
..++++|.. |.|+++++... ++..+......++|++|+-- +.+|+++. .+.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcc
Confidence 467777642 78999999884 44444444557899999877 33466555 4689999998776
Q ss_pred -EEEEec-CCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeee--cCcCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 011971 242 -RVRTME-GHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKL--SGHKSEVCGLKWSYDNRELASGGNDNRLFV 317 (474)
Q Consensus 242 -~~~~~~-~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~spd~~~lasg~~Dg~v~i 317 (474)
....-. .....+.++...+++++.|..-..|.++..+.....+..+ ......++++.+-++++.++.+..+|.|.+
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~ 198 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFV 198 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEE
T ss_pred cchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEE
Confidence 433322 2344788888889999999999999888655433212222 223456888888867679999999999999
Q ss_pred EECC
Q 011971 318 WNQH 321 (474)
Q Consensus 318 wd~~ 321 (474)
+...
T Consensus 199 l~~~ 202 (321)
T PF03178_consen 199 LRYN 202 (321)
T ss_dssp EEE-
T ss_pred EEEC
Confidence 9875
No 362
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.039 Score=53.46 Aligned_cols=213 Identities=15% Similarity=0.152 Sum_probs=126.7
Q ss_pred eCCC-Cc-EEEEE-cCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecC--
Q 011971 174 DWSS-HN-VLAVG-LGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG-- 248 (474)
Q Consensus 174 ~~s~-~~-~la~~-~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~-- 248 (474)
.|.+ .+ ++.+. .++.|.-|+..+++..... ..+.+.++.....+..|+++. . -+.+++.+++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEc-c-ccEEEeccCCceeEEecccc
Confidence 4555 33 44444 4679999999877654433 345556666665555565553 3 367777766655333321
Q ss_pred ---CCCcEEEEEecC-CEEEEEeCC------------CcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC-
Q 011971 249 ---HRLRVGALAWSS-SLLSSGSRD------------KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN- 311 (474)
Q Consensus 249 ---h~~~V~~l~~~~-~~l~sgs~d------------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~- 311 (474)
...+.+.+...+ ..+..+... |.|+.+|. ....+..+..+-..-++|+||||++.|.....
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p--~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP--DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC--CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 113334444442 333333333 33444443 22245555555666789999999987777655
Q ss_pred CCcEEEEECCC--C----cc-eEEEccCCCcEEEEEECCCCCcEEEEecCCCC-CeEEEEECCCCceeeeecCC-CCeEE
Q 011971 312 DNRLFVWNQHS--T----QP-VLKYCEHTAAVKAIAWSPHLHGLLASGGGTAD-RCIRFWNTTTNTHLSCMDTG-SQVCN 382 (474)
Q Consensus 312 Dg~v~iwd~~~--~----~~-~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d-~~I~iwd~~~~~~~~~~~~~-~~v~~ 382 (474)
.+.|+-|++.. + +. ...+....+..-.++...+|...++.. .+ +.|..|+.. |+.+..+... ..+.+
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~---~~g~~v~~~~pd-G~l~~~i~lP~~~~t~ 259 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAV---WGGGRVVRFNPD-GKLLGEIKLPVKRPTN 259 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecc---cCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence 47888888752 1 11 222223456667788888877443332 23 389999988 9999998877 77888
Q ss_pred EEEc-CCCCeEEEEEe
Q 011971 383 LVWS-KNVNELVSTHG 397 (474)
Q Consensus 383 l~~s-~~~~~l~~~~g 397 (474)
++|- ++.+.|++++.
T Consensus 260 ~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 260 PAFGGPDLNTLYITSA 275 (307)
T ss_pred ceEeCCCcCEEEEEec
Confidence 8885 45666666543
No 363
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.53 E-value=0.0071 Score=48.45 Aligned_cols=101 Identities=22% Similarity=0.261 Sum_probs=70.2
Q ss_pred EEEEEEec---CC-CEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc
Q 011971 294 VCGLKWSY---DN-RELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (474)
Q Consensus 294 V~~l~~sp---d~-~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~ 369 (474)
|++|++.. || +.|++|+.|..|++|+-. +.+.++.. ...|.+++-...+. ++.+- ++|+|-+|+- ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~~~--F~Y~l--~NGTVGvY~~--~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGGGR--FAYAL--ANGTVGVYDR--SQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCCCE--EEEEe--cCCEEEEEeC--cc
Confidence 55666554 33 689999999999999844 56667744 45677777777654 33332 7999999975 44
Q ss_pred eeeeecCCCCeEEEEEcCCC----CeEEEEEecCCCeEEE
Q 011971 370 HLSCMDTGSQVCNLVWSKNV----NELVSTHGYSQNQIIV 405 (474)
Q Consensus 370 ~~~~~~~~~~v~~l~~s~~~----~~l~~~~g~~dg~I~i 405 (474)
.+..++...++.++.+..-. .+|++ |.++|.|-+
T Consensus 73 RlWRiKSK~~~~~~~~~D~~gdG~~eLI~--GwsnGkve~ 110 (111)
T PF14783_consen 73 RLWRIKSKNQVTSMAFYDINGDGVPELIV--GWSNGKVEV 110 (111)
T ss_pred eeeeeccCCCeEEEEEEcCCCCCceEEEE--EecCCeEEe
Confidence 56666777778887765533 36777 888887753
No 364
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.48 E-value=0.064 Score=51.94 Aligned_cols=217 Identities=13% Similarity=0.058 Sum_probs=127.7
Q ss_pred EEcCCCC-EEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEE-ecCCEEEEEeCCCcEEEEECcCCcceEeeec----
Q 011971 215 GWANRNT-HLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALA-WSSSLLSSGSRDKSILQRDIRAQEDFVSKLS---- 288 (474)
Q Consensus 215 ~~sp~g~-~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~-~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---- 288 (474)
.|.++.. ++.+--..+.|.-|+..+++.. .+... ..+.++. .+..-++.++..| +.+++...... +..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p-~~~~~~~~~d~~g~Lv~~~~g-~~~~~~~~~~~-~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSP-GGFSSGALIDAGGRLIACEHG-VRLLDPDTGGK-ITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECC-CCcccceeecCCCeEEEEccc-cEEEeccCCce-eEEeccccC
Confidence 4667666 4555556778888888765432 22212 2223333 3333333333333 44455543332 11111
Q ss_pred C-cCCCEEEEEEecCCCEEEEEeC-----------CCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCC
Q 011971 289 G-HKSEVCGLKWSYDNRELASGGN-----------DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTA 356 (474)
Q Consensus 289 ~-h~~~V~~l~~spd~~~lasg~~-----------Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~ 356 (474)
+ -....+.+...|+|.+.+.... -|.|+.+|. .+..+..+..+-..-+.|+|+||++.++++-. .
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT--~ 183 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT--P 183 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC--C
Confidence 1 1134567778889876665433 134555554 45555555566667789999999998888764 5
Q ss_pred CCeEEEEECCC--Cce---eeeec---CCCCeEEEEEcCCCCeEEEEEecCC-CeEEEEECCCCceeEEEcCCCccEEEE
Q 011971 357 DRCIRFWNTTT--NTH---LSCMD---TGSQVCNLVWSKNVNELVSTHGYSQ-NQIIVWRYPTMSKLATLTGHTFRVLYL 427 (474)
Q Consensus 357 d~~I~iwd~~~--~~~---~~~~~---~~~~v~~l~~s~~~~~l~~~~g~~d-g~I~iwd~~~~~~~~~l~~h~~~V~~l 427 (474)
.+.|.-|++.. +.. ...+. .....-.++...+|.+.++ .... +.|.+|+.. ++++..+......++++
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~--a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~ 260 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVA--AVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNP 260 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEe--cccCCceEEEECCC-CcEEEEEECCCCCCccc
Confidence 68888887752 211 11111 2345667778888888765 3334 489999987 99999988877788888
Q ss_pred EEC-CCCCEEEEEeC
Q 011971 428 AIS-PDGQTIVTGAG 441 (474)
Q Consensus 428 ~~s-pdg~~l~t~s~ 441 (474)
+|- ++.+.|+..+.
T Consensus 261 ~FgG~~~~~L~iTs~ 275 (307)
T COG3386 261 AFGGPDLNTLYITSA 275 (307)
T ss_pred eEeCCCcCEEEEEec
Confidence 885 34555554433
No 365
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.48 E-value=0.00036 Score=43.34 Aligned_cols=38 Identities=39% Similarity=0.700 Sum_probs=33.8
Q ss_pred ceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEe
Q 011971 412 SKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWN 449 (474)
Q Consensus 412 ~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~ 449 (474)
+.+..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778899999999999999999999999999996
No 366
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00086 Score=68.18 Aligned_cols=92 Identities=17% Similarity=0.329 Sum_probs=79.3
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEE-EEEECCCCCcEEEEecCCCCCeEEEEECCCCc
Q 011971 291 KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVK-AIAWSPHLHGLLASGGGTADRCIRFWNTTTNT 369 (474)
Q Consensus 291 ~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~-~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~ 369 (474)
...|.-+.|+|.-..+|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|||+ ++|.|- .||+|++.|..++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~--kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-LLAVGF--KDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-EEEEEe--cCCeEEEEEccCCC
Confidence 4568889999999999999999999999988 777888876777777 999999987 777776 89999999999999
Q ss_pred eeee--ecCCCCeEEEEEc
Q 011971 370 HLSC--MDTGSQVCNLVWS 386 (474)
Q Consensus 370 ~~~~--~~~~~~v~~l~~s 386 (474)
.+.. +.....|.++-|.
T Consensus 96 ~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWD 114 (665)
T ss_pred ceeccccccccchheeecc
Confidence 8887 4556678888887
No 367
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.0018 Score=66.65 Aligned_cols=136 Identities=20% Similarity=0.177 Sum_probs=94.2
Q ss_pred cCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEE-EccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011971 290 HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK-YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368 (474)
Q Consensus 290 h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~-~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~ 368 (474)
|...|.--+++..+.+++.|+.-|.|++|+-..++.... ..+..+.+..+..+++. +++|.|+ ..|.|.++-+..+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e-~lvAagt--~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVE-YLVAAGT--ASGRVSVFQLNKE 108 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchh-Hhhhhhc--CCceEEeehhhcc
Confidence 334455455667888999999999999999776654322 22244556666777765 4666654 8899999987764
Q ss_pred cee-----eeec--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC----ceeEEEcCCCccEEEEEEC
Q 011971 369 THL-----SCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM----SKLATLTGHTFRVLYLAIS 430 (474)
Q Consensus 369 ~~~-----~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~s 430 (474)
..- ...+ ++..|+++.|++++..+++ |...|+|..-.+.+. .....+..-.+.|..+.+.
T Consensus 109 ~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ys--GD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 109 LPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYS--GDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred CCCcceeeccccccCCceEEEEEecccccEEee--cCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 321 1112 4678999999999999999 999999999888761 2223333445667666654
No 368
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.37 E-value=0.016 Score=46.40 Aligned_cols=99 Identities=13% Similarity=0.197 Sum_probs=67.7
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEe-cCCEEEEEeCCCcEEEEECcCCcceEe
Q 011971 211 VCSVGWAN---RN-THLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAW-SSSLLSSGSRDKSILQRDIRAQEDFVS 285 (474)
Q Consensus 211 V~~v~~sp---~g-~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~ 285 (474)
|++|++.. +| +.|++|+.|..|+||+-+ ..+..+..+ ..|.+|+- .+..|+.+..+|+|-+|+-.... -
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~Rl---W 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGGGRFAYALANGTVGVYDRSQRL---W 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCCCEEEEEecCCEEEEEeCccee---e
Confidence 56666654 33 589999999999999743 566666644 45666655 46899999999999999864332 2
Q ss_pred eecCcCCCEEEEEEec-C--C-CEEEEEeCCCcEE
Q 011971 286 KLSGHKSEVCGLKWSY-D--N-RELASGGNDNRLF 316 (474)
Q Consensus 286 ~~~~h~~~V~~l~~sp-d--~-~~lasg~~Dg~v~ 316 (474)
..+. +..+.++.+.. + | ..|++|-.+|.|-
T Consensus 76 RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 23366666554 2 2 3689998888774
No 369
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.0038 Score=62.43 Aligned_cols=142 Identities=13% Similarity=0.118 Sum_probs=99.8
Q ss_pred CCCEEE-EEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC---------CEEEEEeCCCcEEEEECcCCcc-eEeee
Q 011971 219 RNTHLA-VGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS---------SLLSSGSRDKSILQRDIRAQED-FVSKL 287 (474)
Q Consensus 219 ~g~~la-~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~---------~~l~sgs~dg~I~iwd~~~~~~-~~~~~ 287 (474)
+.++|+ .+.....++-.|++.|+.+....-|.. |.-+.+.+ ..-+.|-.|..|.-||.|.... .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 344433 444455688889999999999887766 55555542 3456677889999999986553 22222
Q ss_pred cCcC----CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEE
Q 011971 288 SGHK----SEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (474)
Q Consensus 288 ~~h~----~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iw 363 (474)
.+|. ....|++-..+| ++|+|+.+|.|++||--.......+.+-..+|+.|..+.+|+++|+++ +..|.+.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc----~tyLlLi 497 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC----KTYLLLI 497 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec----ccEEEEE
Confidence 2332 334555555455 899999999999999743334445667788999999999999999986 6777777
Q ss_pred ECC
Q 011971 364 NTT 366 (474)
Q Consensus 364 d~~ 366 (474)
++.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 754
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.32 E-value=0.2 Score=50.95 Aligned_cols=256 Identities=14% Similarity=0.085 Sum_probs=137.0
Q ss_pred CcccccCCCCCCCc-ce--eeeeCCC-CcEEEEEc--CC----eEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEE
Q 011971 155 PYKILDAPALQDDF-YL--NLVDWSS-HNVLAVGL--GN----CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLA 224 (474)
Q Consensus 155 p~~~l~ap~~~~d~-~v--~~l~~s~-~~~la~~~--d~----~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la 224 (474)
...+||...+..+. ++ ..+.++| +++++.+. +| .|+++|+.+++.+.-. +.. .....+.|.++++.|+
T Consensus 108 ~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~-~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 108 EEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IEN-PKFSSVSWSDDGKGFF 185 (414)
T ss_dssp -EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEE-EESEEEEECTTSSEEE
T ss_pred eEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccc-cccceEEEeCCCCEEE
Confidence 46777877776655 33 3577887 77777764 33 6999999999765432 111 1123499999998776
Q ss_pred EEeCCC-----------cEEEecCCCCeE--EEEecCCCCc--EEEEEec--CCEEEEE-eCC---CcEEEEECcCC---
Q 011971 225 VGTSHG-----------KVQIWDASRCKR--VRTMEGHRLR--VGALAWS--SSLLSSG-SRD---KSILQRDIRAQ--- 280 (474)
Q Consensus 225 ~gs~dg-----------~I~iwd~~~~~~--~~~~~~h~~~--V~~l~~~--~~~l~sg-s~d---g~I~iwd~~~~--- 280 (474)
....+. .|..|.+.+... ...+...... ...+..+ +.+|+.. ... ..+.+.|+...
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~ 265 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSP 265 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTS
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCC
Confidence 665433 377777766532 2344443332 4556665 4554433 332 34777788764
Q ss_pred cceEeeecCcCCCE-EEEEEecCCCEEEEEe---CCCcEEEEECCCCcc---eEEEccCCCcEEEEEECCCCCcEEEEec
Q 011971 281 EDFVSKLSGHKSEV-CGLKWSYDNRELASGG---NDNRLFVWNQHSTQP---VLKYCEHTAAVKAIAWSPHLHGLLASGG 353 (474)
Q Consensus 281 ~~~~~~~~~h~~~V-~~l~~spd~~~lasg~---~Dg~v~iwd~~~~~~---~~~~~~h~~~V~~l~~sp~~~~ll~sg~ 353 (474)
......+......+ ..+... .+.+++... ..+.|...++..... ...+..+...+.-..+...+.+|++..-
T Consensus 266 ~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~ 344 (414)
T PF02897_consen 266 DAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR 344 (414)
T ss_dssp S-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEE
T ss_pred cCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEE
Confidence 22233333333334 334433 333443332 245788888887653 2244455554333344444566777654
Q ss_pred CCCCCeEEEEECCCCceeeeecC--CCCeEEEEEcCCCCeEEEEEec--CCCeEEEEECCCCce
Q 011971 354 GTADRCIRFWNTTTNTHLSCMDT--GSQVCNLVWSKNVNELVSTHGY--SQNQIIVWRYPTMSK 413 (474)
Q Consensus 354 Gt~d~~I~iwd~~~~~~~~~~~~--~~~v~~l~~s~~~~~l~~~~g~--~dg~I~iwd~~~~~~ 413 (474)
-.....|+++++..+.....+.. .+.|..+...++++.+.....+ .-+.+..||+.+++.
T Consensus 345 ~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 345 ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 11234588999984444444443 3335566656666666553222 235777778777664
No 371
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.31 E-value=0.16 Score=51.05 Aligned_cols=84 Identities=11% Similarity=0.062 Sum_probs=56.0
Q ss_pred CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC--CeEEEEEc----------------CCCCeEE
Q 011971 332 HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGS--QVCNLVWS----------------KNVNELV 393 (474)
Q Consensus 332 h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~--~v~~l~~s----------------~~~~~l~ 393 (474)
....+.+++.+|.+. ++++.. .-|.|.++|+.++..++.++.-. ++.=+... +....++
T Consensus 306 ~~R~~~~i~~sP~~~-laA~tD--slGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 306 SKREGESICLSPSGR-LAAVTD--SLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred CCceEEEEEECCCCC-EEEEEc--CCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 345678999999976 555543 56889999999988877665321 11111111 1112455
Q ss_pred EEEecCCCeEEEEECCCCceeEEEc
Q 011971 394 STHGYSQNQIIVWRYPTMSKLATLT 418 (474)
Q Consensus 394 ~~~g~~dg~I~iwd~~~~~~~~~l~ 418 (474)
+.+.-..|.|.||.++.+..+..+.
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEE
Confidence 5557788999999999888877665
No 372
>PHA02713 hypothetical protein; Provisional
Probab=97.26 E-value=0.026 Score=59.75 Aligned_cols=215 Identities=12% Similarity=0.106 Sum_probs=108.8
Q ss_pred eEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC------CcEEEecCCCCeEEE--EecCCCCcEEEEEec
Q 011971 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH------GKVQIWDASRCKRVR--TMEGHRLRVGALAWS 259 (474)
Q Consensus 188 ~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d------g~I~iwd~~~~~~~~--~~~~h~~~V~~l~~~ 259 (474)
.+..||..+++...+..++....-.+++. -++...++|+.+ ..+..||..+..... .+.............
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 57889999888776654432221122333 256677777753 247788887765322 122222233445566
Q ss_pred CCEEEEEeCCC-----cEEEEECcCCcceEeeecC---cCCCEEEEEEecCCCEEEEEeCCC------------------
Q 011971 260 SSLLSSGSRDK-----SILQRDIRAQEDFVSKLSG---HKSEVCGLKWSYDNRELASGGNDN------------------ 313 (474)
Q Consensus 260 ~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~spd~~~lasg~~Dg------------------ 313 (474)
+.+.+.|+.++ .+..||..+.. ...+.. .......+. -++...+.||.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~--W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDK--WKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCe--EEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccc
Confidence 77888888764 37889987654 122111 111112222 3677888888653
Q ss_pred -----cEEEEECCCCcceE--EEccCCCcEEEEEECCCCCcEEEEecCCC----CCeEEEEECCC-Cc--eeeeecCCCC
Q 011971 314 -----RLFVWNQHSTQPVL--KYCEHTAAVKAIAWSPHLHGLLASGGGTA----DRCIRFWNTTT-NT--HLSCMDTGSQ 379 (474)
Q Consensus 314 -----~v~iwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~----d~~I~iwd~~~-~~--~~~~~~~~~~ 379 (474)
.+..||..+.+-.. .+.........+++ +..|++.||.+. ...+..||..+ .+ .+..+.....
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~---~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH---KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEEEE---CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 47778877654221 11111111112222 234777775211 12467899886 33 2222222222
Q ss_pred eEEEEEcCCCCeEEEEEecCCC--eEEEEECCCCce
Q 011971 380 VCNLVWSKNVNELVSTHGYSQN--QIIVWRYPTMSK 413 (474)
Q Consensus 380 v~~l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~~ 413 (474)
...++.. +..|+++ |+.++ .+..||..+.+-
T Consensus 505 ~~~~~~~--~~~iyv~-Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 505 ALHTILH--DNTIMML-HCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred cceeEEE--CCEEEEE-eeecceeehhhcCcccccc
Confidence 2222222 3344444 55555 566677665443
No 373
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.23 E-value=0.082 Score=47.93 Aligned_cols=204 Identities=14% Similarity=0.130 Sum_probs=120.8
Q ss_pred CCEEEEEeCCCcEEEecCCCCeEEEE-ecCCCCcEEEEEe--c--CCEEEEEeCC-CcEEEEECcCCcc-eEeee---c-
Q 011971 220 NTHLAVGTSHGKVQIWDASRCKRVRT-MEGHRLRVGALAW--S--SSLLSSGSRD-KSILQRDIRAQED-FVSKL---S- 288 (474)
Q Consensus 220 g~~la~gs~dg~I~iwd~~~~~~~~~-~~~h~~~V~~l~~--~--~~~l~sgs~d-g~I~iwd~~~~~~-~~~~~---~- 288 (474)
+.++.+--..|.|.-||+++.+..+. +.+.. +..+.+ . +..++++... -.|.-||...... ...++ .
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 45666666677888899887654433 33322 222222 2 2344444333 3455677433221 11111 0
Q ss_pred -CcCCCEEEEEEecCCCEEEEEeC---------CCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCC
Q 011971 289 -GHKSEVCGLKWSYDNRELASGGN---------DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR 358 (474)
Q Consensus 289 -~h~~~V~~l~~spd~~~lasg~~---------Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~ 358 (474)
......+.-..+|+|++++-.-. .|.++.|-... .+..+...-..-+.++|+.+.+.+..+-+ .+-
T Consensus 105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs--ln~ 180 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDS--LNY 180 (310)
T ss_pred hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEcc--Cce
Confidence 11344556677899998442222 23455554321 12222233344578999999888888765 788
Q ss_pred eEEEEE--CCCCcee-----eeecC----CC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEE
Q 011971 359 CIRFWN--TTTNTHL-----SCMDT----GS-QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLY 426 (474)
Q Consensus 359 ~I~iwd--~~~~~~~-----~~~~~----~~-~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~ 426 (474)
.|.-|| ..+|... ..+.. .+ ..-.++...+|+..++ ....++|...|..+++.+.++.-.+.+|++
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va--~~ng~~V~~~dp~tGK~L~eiklPt~qits 258 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVA--TFNGGTVQKVDPTTGKILLEIKLPTPQITS 258 (310)
T ss_pred EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEE--EecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence 887787 5665432 22222 11 1334566677777777 668899999999999999999988999999
Q ss_pred EEECC
Q 011971 427 LAISP 431 (474)
Q Consensus 427 l~~sp 431 (474)
++|--
T Consensus 259 ccFgG 263 (310)
T KOG4499|consen 259 CCFGG 263 (310)
T ss_pred EEecC
Confidence 99964
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.21 E-value=0.017 Score=61.12 Aligned_cols=151 Identities=14% Similarity=0.115 Sum_probs=92.0
Q ss_pred CCEEEEEEecCCCEEEEEe------CCC--cEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecC---------
Q 011971 292 SEVCGLKWSYDNRELASGG------NDN--RLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGG--------- 354 (474)
Q Consensus 292 ~~V~~l~~spd~~~lasg~------~Dg--~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~G--------- 354 (474)
..+...+++|+|+.++..- .|. .|.+++.. +.. ..+.. ......-.|+|+|..+.+...+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999887765 243 56666652 222 33322 2237889999998866665321
Q ss_pred CCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEE---EECCCCce-e---EEEc-CCCccEEE
Q 011971 355 TADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIV---WRYPTMSK-L---ATLT-GHTFRVLY 426 (474)
Q Consensus 355 t~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~i---wd~~~~~~-~---~~l~-~h~~~V~~ 426 (474)
...+.+.+.++..+.... .....|..+.|||||..++.+. +++|++ -....+.. + ..+. +-...+.+
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~---~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII---GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE---CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 012344444554444333 3356799999999999999864 477877 44444431 1 1122 22334688
Q ss_pred EEECCCCCEEEEEeCCCcEEEEeCC
Q 011971 427 LAISPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 427 l~~spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
+.|..++.++ .+..++.-.+|.+.
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEEEe
Confidence 9999998754 55555544555544
No 375
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.20 E-value=0.03 Score=59.20 Aligned_cols=206 Identities=15% Similarity=0.137 Sum_probs=117.9
Q ss_pred CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-C-----cEEEecCCCCeEEE--EecCCCCcEEEEEe
Q 011971 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-G-----KVQIWDASRCKRVR--TMEGHRLRVGALAW 258 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d-g-----~I~iwd~~~~~~~~--~~~~h~~~V~~l~~ 258 (474)
..|..+|..+++......+.....-.+++... |...++|+.+ | ++..||..+.+-.. .+............
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~-~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l 379 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN-GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL 379 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEEC-CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE
Confidence 47889999999888777665555555666554 5778888888 3 57788887766333 23334444555666
Q ss_pred cCCEEEEEeCCCc-----EEEEECcCCcceEeeecCcCCCEEEEEE-ecCCCEEEEEeCCC------cEEEEECCCCcce
Q 011971 259 SSSLLSSGSRDKS-----ILQRDIRAQEDFVSKLSGHKSEVCGLKW-SYDNRELASGGNDN------RLFVWNQHSTQPV 326 (474)
Q Consensus 259 ~~~~l~sgs~dg~-----I~iwd~~~~~~~~~~~~~h~~~V~~l~~-spd~~~lasg~~Dg------~v~iwd~~~~~~~ 326 (474)
.+.+.++|+.||. |-.||..+.+ ............+... .-+|...++||.++ ++..||..+.+-.
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~--W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNK--WTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCc--ccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence 7889999999974 6778877654 1111112112222222 23688888888665 4678887765432
Q ss_pred E--EEccCCCcEEEEEECCCCCcEEEEecCCCCC-----eEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecC
Q 011971 327 L--KYCEHTAAVKAIAWSPHLHGLLASGGGTADR-----CIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYS 399 (474)
Q Consensus 327 ~--~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~-----~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~ 399 (474)
. .+........ ++.- +..|++.|| .|+ ++..||..+.+-...-........+.....+..++++ |+.
T Consensus 458 ~~~~M~~~R~~~g-~a~~--~~~iYvvGG--~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~v-GG~ 531 (571)
T KOG4441|consen 458 LIAPMNTRRSGFG-VAVL--NGKIYVVGG--FDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAV-GGF 531 (571)
T ss_pred ecCCcccccccce-EEEE--CCEEEEECC--ccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEE-ecc
Confidence 1 1111111111 2222 345888876 444 3777888776544332233333333333344555554 444
Q ss_pred CC
Q 011971 400 QN 401 (474)
Q Consensus 400 dg 401 (474)
+|
T Consensus 532 ~~ 533 (571)
T KOG4441|consen 532 DG 533 (571)
T ss_pred cC
Confidence 44
No 376
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0019 Score=65.85 Aligned_cols=80 Identities=18% Similarity=0.298 Sum_probs=71.3
Q ss_pred CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEE-EEEECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 376 TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVL-YLAISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 376 ~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
....+..+.|+|.-..++. +..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.|+.|-.||+|++.|++.+.
T Consensus 19 l~~~i~~~ewnP~~dLiA~--~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIAT--RTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cccceEEEEEcCccchhhe--eccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 4556888999999999999 7799999999998 889999987877777 99999999999999999999999999987
Q ss_pred CCCC
Q 011971 455 KSQN 458 (474)
Q Consensus 455 ~~~~ 458 (474)
....
T Consensus 96 ~l~~ 99 (665)
T KOG4640|consen 96 RLVS 99 (665)
T ss_pred ceec
Confidence 6654
No 377
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.0045 Score=67.08 Aligned_cols=144 Identities=13% Similarity=0.117 Sum_probs=95.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeC--CCcEEEecCCCCeEEE-----Ee------cCCCCcEEEEEecC---CEEEEEeCCCc
Q 011971 208 DDSVCSVGWANRNTHLAVGTS--HGKVQIWDASRCKRVR-----TM------EGHRLRVGALAWSS---SLLSSGSRDKS 271 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~--dg~I~iwd~~~~~~~~-----~~------~~h~~~V~~l~~~~---~~l~sgs~dg~ 271 (474)
.-.+..+...+|+...++... +-.|..||+.+...-. -+ .....-..++.|++ ...+....|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 445666666777765554433 3368889986532211 11 12334567788985 56788889999
Q ss_pred EEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEcc----CCCcEEEEEECCCCCc
Q 011971 272 ILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCE----HTAAVKAIAWSPHLHG 347 (474)
Q Consensus 272 I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~----h~~~V~~l~~sp~~~~ 347 (474)
|.+..+......+.. ......+++++|+|.|+++++|-+.|++.-|... .+....+.+ ....|.+|+|-....+
T Consensus 180 l~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeE
Confidence 998877654433333 2345668999999999999999999999888754 222222221 2478999999988776
Q ss_pred EEEEec
Q 011971 348 LLASGG 353 (474)
Q Consensus 348 ll~sg~ 353 (474)
+++-+.
T Consensus 258 lvvy~n 263 (1405)
T KOG3630|consen 258 LVVYGN 263 (1405)
T ss_pred EEEecc
Confidence 666654
No 378
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.15 E-value=0.012 Score=63.33 Aligned_cols=133 Identities=17% Similarity=0.163 Sum_probs=96.4
Q ss_pred CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcC-----CCCEEEEEeCCCcEEEecCCCC--eEEEE-ec--CCCCcEEE
Q 011971 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-----RNTHLAVGTSHGKVQIWDASRC--KRVRT-ME--GHRLRVGA 255 (474)
Q Consensus 186 d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp-----~g~~la~gs~dg~I~iwd~~~~--~~~~~-~~--~h~~~V~~ 255 (474)
.+.||-.|++.|+++..+.+....+|..++-.. .....++|-.+..+..||..-. +++.. .. .......|
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~ 582 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC 582 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence 468999999999999999876555566654321 1335667888889999998643 23321 11 23456777
Q ss_pred EEec-CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011971 256 LAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ 320 (474)
Q Consensus 256 l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~ 320 (474)
++-. ..+|++|+.+|.|++||- .+......+.+-..+|.+|..+.||++|++.+. ..|.+++.
T Consensus 583 ~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 583 FATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred EEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 7777 489999999999999994 333334456677899999999999999887765 56777775
No 379
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.24 Score=46.56 Aligned_cols=264 Identities=13% Similarity=0.028 Sum_probs=148.3
Q ss_pred eCCCCcEEEEEcCCeEEEEeCCCCCEEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC---eEEEEecCC
Q 011971 174 DWSSHNVLAVGLGNCVYLWNACSSKVTKLCDL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC---KRVRTMEGH 249 (474)
Q Consensus 174 ~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~-~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~---~~~~~~~~h 249 (474)
.++.+....+-.+..++|.|+.+.....+... ...+.-.++..+ |++..++..+.-+.+.|+.+. .+...+...
T Consensus 93 ~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~~ 170 (370)
T COG5276 93 RVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALP 170 (370)
T ss_pred EecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCCceeeeeeccC
Confidence 34445555555567889999887654444322 223455555554 889988886666778888654 445555556
Q ss_pred CCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCC-CEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEE
Q 011971 250 RLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKS-EVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK 328 (474)
Q Consensus 250 ~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~ 328 (474)
......++.++++-..+..|+-+.+.|+..+..++..-.-..+ .+.++..+++..+++...+ -+.+-|..+.+....
T Consensus 171 ~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e--gvlivd~s~~ssp~~ 248 (370)
T COG5276 171 GGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVLIVDVSGPSSPTV 248 (370)
T ss_pred CCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc--ceEEEecCCCCCceE
Confidence 6666888999999999999999999999887754433222223 6888888777655555443 477778777665444
Q ss_pred Ec--cCCCc--EEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc---eeeeecCCC-CeEEEEEcCCCCeEEEEEecCC
Q 011971 329 YC--EHTAA--VKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT---HLSCMDTGS-QVCNLVWSKNVNELVSTHGYSQ 400 (474)
Q Consensus 329 ~~--~h~~~--V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~---~~~~~~~~~-~v~~l~~s~~~~~l~~~~g~~d 400 (474)
+. +...+ +..+..+ +++..+.-+ +.-+-+-|+.+.. ....+.+.. +-..+..+ +.++..+ ..
T Consensus 249 ~gsyet~~p~~~s~v~Vs--~~~~Yvadg---a~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yia---dk 318 (370)
T COG5276 249 FGSYETSNPVSISTVPVS--GEYAYVADG---AKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIA---DK 318 (370)
T ss_pred eeccccCCcccccceecc--cceeeeecc---ccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEec---cC
Confidence 42 22222 2222332 343444332 4445555554422 222222222 33333322 2222221 11
Q ss_pred CeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 011971 401 NQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 401 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
+...+-+....+.+....+-...+.+.+.+-+.+.+.+...++-+.+|+..
T Consensus 319 n~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 319 NTGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred CceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 133333433333222223333334444445566788889999999999863
No 380
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.08 E-value=0.0013 Score=40.58 Aligned_cols=37 Identities=30% Similarity=0.609 Sum_probs=32.7
Q ss_pred eEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011971 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWN 319 (474)
Q Consensus 283 ~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd 319 (474)
....+..|...|.++.|++++..+++++.|+.+++||
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3555667889999999999999999999999999996
No 381
>PHA02713 hypothetical protein; Provisional
Probab=97.06 E-value=0.067 Score=56.65 Aligned_cols=218 Identities=11% Similarity=0.121 Sum_probs=108.6
Q ss_pred cEEEecCCCCeEEE--EecCCCCcEEEEEecCCEEEEEeCC------CcEEEEECcCCcc-eEeeecCcCCCEEEEEEec
Q 011971 231 KVQIWDASRCKRVR--TMEGHRLRVGALAWSSSLLSSGSRD------KSILQRDIRAQED-FVSKLSGHKSEVCGLKWSY 301 (474)
Q Consensus 231 ~I~iwd~~~~~~~~--~~~~h~~~V~~l~~~~~~l~sgs~d------g~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~sp 301 (474)
.+..||..+.+... .+.............+.+++.|+.+ ..+..||..+..- .+..+.......... .-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EE
Confidence 56788887765332 2221111223344456777777754 3477888876541 111111111122222 23
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCcceE--EEccCCCcEEEEEECCCCCcEEEEecCCC------------------
Q 011971 302 DNRELASGGNDN-----RLFVWNQHSTQPVL--KYCEHTAAVKAIAWSPHLHGLLASGGGTA------------------ 356 (474)
Q Consensus 302 d~~~lasg~~Dg-----~v~iwd~~~~~~~~--~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~------------------ 356 (474)
+|+..+.||.++ .+..||..+.+-.. .+.........++. +..+++.||.+.
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE---CCEEEEEeCCCccccccccccccccccccc
Confidence 677888888764 48889987653221 11111111122222 345777775211
Q ss_pred ---CCeEEEEECCCCce--eeeecCCCCeEEEEEcCCCCeEEEEEecCC-----CeEEEEECCC---CceeEEEcCCCcc
Q 011971 357 ---DRCIRFWNTTTNTH--LSCMDTGSQVCNLVWSKNVNELVSTHGYSQ-----NQIIVWRYPT---MSKLATLTGHTFR 423 (474)
Q Consensus 357 ---d~~I~iwd~~~~~~--~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d-----g~I~iwd~~~---~~~~~~l~~h~~~ 423 (474)
-..+..||..+.+- +..+.....-.+++ .-++ .|++..|..+ ..+..||..+ +..+..+......
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEE-EECC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 13477788776532 22221111111111 2233 4444434321 2467888775 4445555443333
Q ss_pred EEEEEECCCCCEEEEEeCCC--cEEEEeCCCCCCCC
Q 011971 424 VLYLAISPDGQTIVTGAGDE--TLRFWNVFPSPKSQ 457 (474)
Q Consensus 424 V~~l~~spdg~~l~t~s~Dg--~I~iW~l~~~~~~~ 457 (474)
...+++ +|+..++|+.|| ++-.||+.+..-..
T Consensus 506 ~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 506 LHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred ceeEEE--CCEEEEEeeecceeehhhcCcccccccc
Confidence 334444 788888999888 67777777665443
No 382
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.02 E-value=0.18 Score=47.38 Aligned_cols=160 Identities=12% Similarity=0.141 Sum_probs=105.4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecC-CCCcEEEEEec-C-CEEEEEeCCCcEEEEECcCCcc
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEG-HRLRVGALAWS-S-SLLSSGSRDKSILQRDIRAQED 282 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~-h~~~V~~l~~~-~-~~l~sgs~dg~I~iwd~~~~~~ 282 (474)
+....|.++.|+|+.+.|++......-.||=...|+.++++.- .-...-.+.|- + .+.++--+++.+.++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 4456699999999999999888888888887778999988752 12223445664 2 4445555677777776655432
Q ss_pred eE---------eeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcce---EEEccC-------CCcEEEEEECC
Q 011971 283 FV---------SKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV---LKYCEH-------TAAVKAIAWSP 343 (474)
Q Consensus 283 ~~---------~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~---~~~~~h-------~~~V~~l~~sp 343 (474)
.+ ...........+++|.|.+..|..+-+-+-+.||.+...... +....+ -..|.++.|++
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 11 111112556789999999999999988888888776543211 111111 23467788887
Q ss_pred CCCcEEEEecCCCCCeEEEEECCC
Q 011971 344 HLHGLLASGGGTADRCIRFWNTTT 367 (474)
Q Consensus 344 ~~~~ll~sg~Gt~d~~I~iwd~~~ 367 (474)
....|++-+. +++.+.-.|...
T Consensus 243 ~~~~LLVLS~--ESr~l~Evd~~G 264 (316)
T COG3204 243 ITNSLLVLSD--ESRRLLEVDLSG 264 (316)
T ss_pred CCCcEEEEec--CCceEEEEecCC
Confidence 7777777765 677777777543
No 383
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.01 E-value=0.056 Score=57.22 Aligned_cols=231 Identities=16% Similarity=0.162 Sum_probs=120.8
Q ss_pred CCCCEEEEEeCCC------cEEEecCCCCeEEE--EecCCCCcEEEEEecCCEEEEEeCC-C-----cEEEEECcCCcce
Q 011971 218 NRNTHLAVGTSHG------KVQIWDASRCKRVR--TMEGHRLRVGALAWSSSLLSSGSRD-K-----SILQRDIRAQEDF 283 (474)
Q Consensus 218 p~g~~la~gs~dg------~I~iwd~~~~~~~~--~~~~h~~~V~~l~~~~~~l~sgs~d-g-----~I~iwd~~~~~~~ 283 (474)
..+.++++|+.++ .+..||..+++... .+......+......+.+.++|+.| | ++..||.+..+ .
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W 361 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ-W 361 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc-e
Confidence 3456777777763 57889988774333 2333333444455567788999998 3 57788887765 2
Q ss_pred EeeecCcCCCEEEEEE-ecCCCEEEEEeCCCc-----EEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCC
Q 011971 284 VSKLSGHKSEVCGLKW-SYDNRELASGGNDNR-----LFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTAD 357 (474)
Q Consensus 284 ~~~~~~h~~~V~~l~~-spd~~~lasg~~Dg~-----v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d 357 (474)
. ....-...-..+.. .-+|...|+||.||. |-.||..+.+-...- .........+....+..++++||....
T Consensus 362 ~-~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 362 T-PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred e-ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccC-CCCcceeeeEEEEECCEEEEEcCcCCC
Confidence 2 22211111111111 126888999999874 777887665432211 111133333333334568888762221
Q ss_pred ----CeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCC-----eEEEEECCCCc--eeEEEcCCCccEEE
Q 011971 358 ----RCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQN-----QIIVWRYPTMS--KLATLTGHTFRVLY 426 (474)
Q Consensus 358 ----~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg-----~I~iwd~~~~~--~~~~l~~h~~~V~~ 426 (474)
..+..||..++.-...-.....-......--+..|+++ |+.++ .|..||..+.+ .+..+......+..
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvv-GG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~ 518 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVV-GGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGV 518 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEE-CCccCCCccceEEEEcCCCCceeEcccCccccccccE
Confidence 45778888776533322211111111111223445554 44443 36778876543 33333333333333
Q ss_pred EEECCCCCEEEEEeCCCc-----EEEEeCCCCC
Q 011971 427 LAISPDGQTIVTGAGDET-----LRFWNVFPSP 454 (474)
Q Consensus 427 l~~spdg~~l~t~s~Dg~-----I~iW~l~~~~ 454 (474)
+.+ ++...+.|+.||. |..||.....
T Consensus 519 ~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 519 VVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred EEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 344 6667778887764 5556554443
No 384
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.90 E-value=0.16 Score=53.96 Aligned_cols=202 Identities=17% Similarity=0.139 Sum_probs=106.6
Q ss_pred CCcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEe------CCC--cEEEEECcCCcceEeeecCcCCCEEEEE
Q 011971 229 HGKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGS------RDK--SILQRDIRAQEDFVSKLSGHKSEVCGLK 298 (474)
Q Consensus 229 dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs------~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 298 (474)
+|.+.-.+-.....+.-..+....+...+.+ ++.++... .|. .|.+++.... ......+. ....-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~--~~~lt~g~--~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV--AVQVLEGH--SLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc--ceeeecCC--CCCCce
Confidence 6665554422222222122222345666665 34444433 233 4555564222 22222222 377889
Q ss_pred EecCCCEEEEEeCC------------CcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEE---E
Q 011971 299 WSYDNRELASGGND------------NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRF---W 363 (474)
Q Consensus 299 ~spd~~~lasg~~D------------g~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~i---w 363 (474)
|+|||..|++.... +.+.+.++..+.... .....|..+.|+|||..+++.. ++.|.+ -
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~----~g~v~Va~Vv 476 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII----GGKVYLAVVE 476 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE----CCEEEEEEEE
Confidence 99998888776533 233333444333322 2355799999999999888875 467766 4
Q ss_pred ECCCCce-e---eeec--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceeEEEcC--CCccEEEEEECCCCC
Q 011971 364 NTTTNTH-L---SCMD--TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT-MSKLATLTG--HTFRVLYLAISPDGQ 434 (474)
Q Consensus 364 d~~~~~~-~---~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~~~~~~l~~--h~~~V~~l~~spdg~ 434 (474)
....|.. + ..+. ....+..+.|..++..++. ..++...+|.+.- +.....+.. ....+..++-+++
T Consensus 477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~---~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-- 551 (591)
T PRK13616 477 QTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVG---RSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-- 551 (591)
T ss_pred eCCCCceeecccEEeecccCCccccceEecCCEEEEE---ecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--
Confidence 4445541 1 1121 2334688999999995533 2333334454431 222112232 2567778887763
Q ss_pred EEEEEeCCCcEE
Q 011971 435 TIVTGAGDETLR 446 (474)
Q Consensus 435 ~l~t~s~Dg~I~ 446 (474)
.|+.+..+|.+.
T Consensus 552 ~iyv~~~~g~~~ 563 (591)
T PRK13616 552 TVYVTDARAVLQ 563 (591)
T ss_pred eEEEEcCCceEE
Confidence 466666676433
No 385
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.83 E-value=0.57 Score=46.11 Aligned_cols=230 Identities=15% Similarity=0.191 Sum_probs=121.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeE---EEEe----cCCCCcEEEEEecC-----CEEEEEeCC--------
Q 011971 210 SVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR---VRTM----EGHRLRVGALAWSS-----SLLSSGSRD-------- 269 (474)
Q Consensus 210 ~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~---~~~~----~~h~~~V~~l~~~~-----~~l~sgs~d-------- 269 (474)
..++|+|.|+|++|+ +...|.|.+++ ..+.. +..+ .........+++++ ..|......
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 468899999987655 56699999999 44433 3333 23456788999986 344443331
Q ss_pred -CcEEEEECcCC-------cceEeeecC---cCCCEEEEEEecCCCEEEEEeCCC-------------cEEEEECCCC--
Q 011971 270 -KSILQRDIRAQ-------EDFVSKLSG---HKSEVCGLKWSYDNRELASGGNDN-------------RLFVWNQHST-- 323 (474)
Q Consensus 270 -g~I~iwd~~~~-------~~~~~~~~~---h~~~V~~l~~spd~~~lasg~~Dg-------------~v~iwd~~~~-- 323 (474)
..|.-|..... +.++..+.. ....-..|.|.|||.++++.+..+ .|.-.+....
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 23444444332 111122222 234457799999998777765433 2333333211
Q ss_pred ------------cceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc----------------------
Q 011971 324 ------------QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT---------------------- 369 (474)
Q Consensus 324 ------------~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~---------------------- 369 (474)
..+.. .++. ....++|+|....|+++-.| .+..=.|.-+..|.
T Consensus 161 ~dnP~~~~~~~~~~i~A-~GlR-N~~~~~~d~~tg~l~~~d~G-~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYA-YGLR-NPFGLAFDPNTGRLWAADNG-PDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp TTSTTTTSTTSTTTEEE-E--S-EEEEEEEETTTTEEEEEEE--SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCccccCCCceEEEEE-eCCC-ccccEEEECCCCcEEEEccC-CCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 00111 1222 24589999984446665433 33222222222211
Q ss_pred -------eeeeecCCCCeEEEEEcCC-------CCeEEEEEecCCCeEEEEECCCCceeE---E-EcCCCccEEEEEECC
Q 011971 370 -------HLSCMDTGSQVCNLVWSKN-------VNELVSTHGYSQNQIIVWRYPTMSKLA---T-LTGHTFRVLYLAISP 431 (474)
Q Consensus 370 -------~~~~~~~~~~v~~l~~s~~-------~~~l~~~~g~~dg~I~iwd~~~~~~~~---~-l~~h~~~V~~l~~sp 431 (474)
++..+..+..+..+.|... +.+++. ....+.|....+.....+. . +.....++..+++.|
T Consensus 238 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p 315 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVA--DYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP 315 (331)
T ss_dssp S-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEE--ETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred CCCCcCccceeecCccccCceEEECCccCccccCcEEEe--cCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence 1222334456777777643 344555 5556788888876443322 2 224555899999999
Q ss_pred CCCEEEEEeCCCcEE
Q 011971 432 DGQTIVTGAGDETLR 446 (474)
Q Consensus 432 dg~~l~t~s~Dg~I~ 446 (474)
||.+.++...+|.|+
T Consensus 316 DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 316 DGALYVSDDSDGKIY 330 (331)
T ss_dssp TSEEEEEE-TTTTEE
T ss_pred CCeEEEEECCCCeEe
Confidence 999888888888875
No 386
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.80 E-value=0.58 Score=46.29 Aligned_cols=224 Identities=17% Similarity=0.177 Sum_probs=109.6
Q ss_pred EEcCCCCEEEEEeC-CC--cEEEecCCCCeEEEEecCCCC-c-EEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecC
Q 011971 215 GWANRNTHLAVGTS-HG--KVQIWDASRCKRVRTMEGHRL-R-VGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSG 289 (474)
Q Consensus 215 ~~sp~g~~la~gs~-dg--~I~iwd~~~~~~~~~~~~h~~-~-V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 289 (474)
+|.++|+.|+.++. +| .+.+.|+++++..+.-.+... . -..++-..+.++-...+..|.-.|+.+.+. ...+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEEC
Confidence 67789976666554 55 567778888776554443211 1 122332345665555667888889888763 233333
Q ss_pred cCCCEEEEEEe--cCCCEEEEEeC----------------------CCcEEEEECCCCcceEEEccCCCcEEEEEECCCC
Q 011971 290 HKSEVCGLKWS--YDNRELASGGN----------------------DNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHL 345 (474)
Q Consensus 290 h~~~V~~l~~s--pd~~~lasg~~----------------------Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~ 345 (474)
....+-...|. .|+..++-.-. ...|.-.|+.+++....+ .....+..+.|+|..
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~-~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF-EDTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE-EESS-EEEEEEETTE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE-ecCccccCcccCCCC
Confidence 44444445553 35555432211 234666788887765444 445677889999988
Q ss_pred CcEEEEec-CCCCCe-EEEEECCC-Cceeeeec---CCCCeEEEEEcCCCCeEEEEEe---cCCCeEEEEECCCCceeEE
Q 011971 346 HGLLASGG-GTADRC-IRFWNTTT-NTHLSCMD---TGSQVCNLVWSKNVNELVSTHG---YSQNQIIVWRYPTMSKLAT 416 (474)
Q Consensus 346 ~~ll~sg~-Gt~d~~-I~iwd~~~-~~~~~~~~---~~~~v~~l~~s~~~~~l~~~~g---~~dg~I~iwd~~~~~~~~~ 416 (474)
..+++-|- |..+.. -|+|-+++ +.....+. ....+..=-|.++|..+.-... ..+..|.-+|..+++....
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 87777653 223332 25565433 22222222 2233555669999998776432 2233566677777765332
Q ss_pred EcCCCccEEEEEECCCCCEEEEEeCC
Q 011971 417 LTGHTFRVLYLAISPDGQTIVTGAGD 442 (474)
Q Consensus 417 l~~h~~~V~~l~~spdg~~l~t~s~D 442 (474)
.. ......+-.++||.+++-=+.|
T Consensus 280 ~~--~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 280 ME--MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred Ee--CCceeeeEEcCCCCEEEecCCC
Confidence 22 1234566778899887654443
No 387
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.79 E-value=0.55 Score=45.33 Aligned_cols=227 Identities=11% Similarity=0.122 Sum_probs=110.8
Q ss_pred CcceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecC--CCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeE-E
Q 011971 167 DFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLG--IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKR-V 243 (474)
Q Consensus 167 d~~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~--~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~-~ 243 (474)
++.++.|.+.....+++|..+.|.. ....|+.-..+.+. -.+....+....++..++ ++..|.|..=. +.++. .
T Consensus 61 ~~~l~~I~f~~~~g~ivG~~g~ll~-T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~ 137 (302)
T PF14870_consen 61 DYHLNSISFDGNEGWIVGEPGLLLH-TTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQ 137 (302)
T ss_dssp --EEEEEEEETTEEEEEEETTEEEE-ESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEES-STTSSEE
T ss_pred eeeEEEEEecCCceEEEcCCceEEE-ecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCee
Confidence 4678888888777777777665443 44444433333221 234445555544444333 34455443322 22322 2
Q ss_pred EEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011971 244 RTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (474)
Q Consensus 244 ~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~ 321 (474)
.....-.+.+..+.-. +.+++++.......-||.-... ....-..-...|..+.|.|++.+.+.+ ..|.|+.=+..
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~ 215 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP 215 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCC
Confidence 2234445667777665 3556666555555677754332 222223346789999999998766654 88889888722
Q ss_pred C-CcceEE----EccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec----CCCCeEEEEEcCCCCeE
Q 011971 322 S-TQPVLK----YCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD----TGSQVCNLVWSKNVNEL 392 (474)
Q Consensus 322 ~-~~~~~~----~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~----~~~~v~~l~~s~~~~~l 392 (474)
. .+.-.. +....-.+..++|.+++. ++++|+ .|.+ +.....|+.-.... ..+.+..+.|....+-+
T Consensus 216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg---~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf 290 (302)
T PF14870_consen 216 DDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG---SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF 290 (302)
T ss_dssp TEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES---TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE
T ss_pred CCccccccccCCcccCceeeEEEEecCCCC-EEEEeC---CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceE
Confidence 1 111111 111223478999998855 777764 5544 45566666555543 34568899998777777
Q ss_pred EEEEecCCCeEEEE
Q 011971 393 VSTHGYSQNQIIVW 406 (474)
Q Consensus 393 ~~~~g~~dg~I~iw 406 (474)
+. | .+|.|.-|
T Consensus 291 ~l--G-~~G~ll~~ 301 (302)
T PF14870_consen 291 VL--G-QDGVLLRY 301 (302)
T ss_dssp EE----STTEEEEE
T ss_pred EE--C-CCcEEEEe
Confidence 77 5 67776544
No 388
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.0055 Score=66.12 Aligned_cols=112 Identities=18% Similarity=0.250 Sum_probs=80.3
Q ss_pred CCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEE
Q 011971 249 HRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLK 328 (474)
Q Consensus 249 h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~ 328 (474)
....+.+.+.-...++.|+..|.|...|+...-.+...-..-.++|++++|+.+|..++.|-.+|.|.+||...++.++.
T Consensus 88 ~~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 88 IAAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKV 167 (1206)
T ss_pred CCcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceee
Confidence 34455556666677888888999988888764322222333467899999999999999999999999999999999999
Q ss_pred EccCCCcEEEE---EECCCCCcEEEEecCCCCCeEEEEEC
Q 011971 329 YCEHTAAVKAI---AWSPHLHGLLASGGGTADRCIRFWNT 365 (474)
Q Consensus 329 ~~~h~~~V~~l---~~sp~~~~ll~sg~Gt~d~~I~iwd~ 365 (474)
+..|..++.++ .|..++. .+.++. ..|. +|.+
T Consensus 168 i~e~~ap~t~vi~v~~t~~nS-~llt~D--~~Gs--f~~l 202 (1206)
T KOG2079|consen 168 ITEHGAPVTGVIFVGRTSQNS-KLLTSD--TGGS--FWKL 202 (1206)
T ss_pred eeecCCccceEEEEEEeCCCc-EEEEcc--CCCc--eEEE
Confidence 88877766554 4444444 455542 3343 6654
No 389
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=0.042 Score=55.31 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=94.8
Q ss_pred CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCC-------EEEEEeCCCcEEEecCCCC-e-EEEEecCCC----Cc
Q 011971 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNT-------HLAVGTSHGKVQIWDASRC-K-RVRTMEGHR----LR 252 (474)
Q Consensus 186 d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~-------~la~gs~dg~I~iwd~~~~-~-~~~~~~~h~----~~ 252 (474)
...+|--|++.|+++..+.++. .|.-+.+.|+++ .-++|-.+..|.-||..-. + .+...++|. ..
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~~--di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~n 432 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFED--DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNN 432 (644)
T ss_pred cCcceeeecccceeeeEeeccC--CcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccc
Confidence 4689999999999999997643 377788888653 2356777888999997632 1 233333332 34
Q ss_pred EEEEEec-CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011971 253 VGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (474)
Q Consensus 253 V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~ 321 (474)
..|.+-. ..++++|+.+|.|++||- ........+.+-..+|..+..+.+|++|+..+. ..+.+.++.
T Consensus 433 Fsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t~ 500 (644)
T KOG2395|consen 433 FSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDTL 500 (644)
T ss_pred cceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEEe
Confidence 4555554 579999999999999996 444345567778899999999999998876654 567666653
No 390
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.74 E-value=0.3 Score=52.90 Aligned_cols=171 Identities=12% Similarity=0.109 Sum_probs=114.5
Q ss_pred eEEEEeCCCCCEEEEEecCCCCCEEEE---EEcCC-CCEEEEEeC----------CCcEEEecCCCCeEEEEecCC--CC
Q 011971 188 CVYLWNACSSKVTKLCDLGIDDSVCSV---GWANR-NTHLAVGTS----------HGKVQIWDASRCKRVRTMEGH--RL 251 (474)
Q Consensus 188 ~V~lwd~~~~~~~~~~~~~~~~~V~~v---~~sp~-g~~la~gs~----------dg~I~iwd~~~~~~~~~~~~h--~~ 251 (474)
.+.++|.++-++....++.....+.++ .|..| +.++++|+. .|.|.||..+..+.+..+..+ .+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 688999999888887776555555544 48877 788999874 578888888775444444332 34
Q ss_pred cEEEEE-ecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--ceEE
Q 011971 252 RVGALA-WSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ--PVLK 328 (474)
Q Consensus 252 ~V~~l~-~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~--~~~~ 328 (474)
.|.++. |++.+++ +-+..|++|++.+.+ .+..-..|...+..+...-.|..+++|.--+.+.+.-.+..+ ....
T Consensus 831 av~aL~~fngkllA--~In~~vrLye~t~~~-eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev 907 (1096)
T KOG1897|consen 831 AVYALVEFNGKLLA--GINQSVRLYEWTTER-ELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV 907 (1096)
T ss_pred ceeehhhhCCeEEE--ecCcEEEEEEccccc-eehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe
Confidence 555554 4455544 345689999998775 355556678889999998999999999988877765554433 3222
Q ss_pred Ec-cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEEC
Q 011971 329 YC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365 (474)
Q Consensus 329 ~~-~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~ 365 (474)
-+ .+....+++.+-.+..++.+. .+|.+.+.-.
T Consensus 908 ArD~~p~Wmtaveil~~d~ylgae----~~gNlf~v~~ 941 (1096)
T KOG1897|consen 908 ARDYNPNWMTAVEILDDDTYLGAE----NSGNLFTVRK 941 (1096)
T ss_pred ehhhCccceeeEEEecCceEEeec----ccccEEEEEe
Confidence 22 366677888877665544332 4666666543
No 391
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.61 E-value=0.29 Score=48.81 Aligned_cols=195 Identities=12% Similarity=0.118 Sum_probs=91.9
Q ss_pred CEEEEEe-CCCcEEEEECcCCc---ceEeeecC---cC----CCEEEEEEecCCCEEEEEe--C----CCcEEEEECCCC
Q 011971 261 SLLSSGS-RDKSILQRDIRAQE---DFVSKLSG---HK----SEVCGLKWSYDNRELASGG--N----DNRLFVWNQHST 323 (474)
Q Consensus 261 ~~l~sgs-~dg~I~iwd~~~~~---~~~~~~~~---h~----~~V~~l~~spd~~~lasg~--~----Dg~v~iwd~~~~ 323 (474)
++|+..+ ..+.|+|.|+.+.. .+.+.+.. +. .....+..-|+|+.++++- . -|-+.+.|-++.
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 3444444 66777777776422 12222221 11 2223344557888888752 2 245888888887
Q ss_pred cceEEEccC---CCcEEEEEECCCCCcEEEEec-----------------CCCCCeEEEEECCCCceeeeecCCCC---e
Q 011971 324 QPVLKYCEH---TAAVKAIAWSPHLHGLLASGG-----------------GTADRCIRFWNTTTNTHLSCMDTGSQ---V 380 (474)
Q Consensus 324 ~~~~~~~~h---~~~V~~l~~sp~~~~ll~sg~-----------------Gt~d~~I~iwd~~~~~~~~~~~~~~~---v 380 (474)
+........ ...-+.+-|.|..+.++.+.- +....++.+||+.+.+.+++++.+.. +
T Consensus 168 ~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~p 247 (461)
T PF05694_consen 168 EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMP 247 (461)
T ss_dssp -EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEE
T ss_pred cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCce
Confidence 777666542 234467788887664444421 22457899999999999999997743 4
Q ss_pred EEEEEc--CCCCeEEEEEecCCCeEEEEECCCCc----eeEEEcCC-----------------CccEEEEEECCCCCEEE
Q 011971 381 CNLVWS--KNVNELVSTHGYSQNQIIVWRYPTMS----KLATLTGH-----------------TFRVLYLAISPDGQTIV 437 (474)
Q Consensus 381 ~~l~~s--~~~~~l~~~~g~~dg~I~iwd~~~~~----~~~~l~~h-----------------~~~V~~l~~spdg~~l~ 437 (474)
..+.|. |+..+-++.+.-+....++|.-..++ .+.++..- ..-|+.+.+|.|.++|.
T Consensus 248 LEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLY 327 (461)
T PF05694_consen 248 LEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLY 327 (461)
T ss_dssp EEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEE
T ss_pred EEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEE
Confidence 566665 44555454333333334444433332 23333211 23479999999999997
Q ss_pred EEe-CCCcEEEEeCCCCCC
Q 011971 438 TGA-GDETLRFWNVFPSPK 455 (474)
Q Consensus 438 t~s-~Dg~I~iW~l~~~~~ 455 (474)
... .+|.||.||+.....
T Consensus 328 vs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 328 VSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp EEETTTTEEEEEE-SSTTS
T ss_pred EEcccCCcEEEEecCCCCC
Confidence 665 689999999987543
No 392
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.024 Score=61.39 Aligned_cols=92 Identities=21% Similarity=0.326 Sum_probs=68.0
Q ss_pred EEEEEcCCeEEEEeCCCCCEEEEE-ecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEe
Q 011971 180 VLAVGLGNCVYLWNACSSKVTKLC-DLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAW 258 (474)
Q Consensus 180 ~la~~~d~~V~lwd~~~~~~~~~~-~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~ 258 (474)
+++++..|.|-..|..+. ..... .....++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+...+-+
T Consensus 102 ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred EEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 334444567877776543 21111 1133689999999999999999999999999999999999999877777666555
Q ss_pred c-----CCEEEEEeCCCcE
Q 011971 259 S-----SSLLSSGSRDKSI 272 (474)
Q Consensus 259 ~-----~~~l~sgs~dg~I 272 (474)
. +..++++...|.+
T Consensus 181 v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 181 VGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred EEEeCCCcEEEEccCCCce
Confidence 3 3568888888873
No 393
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.57 E-value=0.96 Score=45.27 Aligned_cols=239 Identities=11% Similarity=0.138 Sum_probs=112.0
Q ss_pred CCEEEEEecCCC-CCEEEEEEc-----------CCCCEEEEEe-CCCcEEEecCC----CCeEEEEecC---CC------
Q 011971 197 SKVTKLCDLGID-DSVCSVGWA-----------NRNTHLAVGT-SHGKVQIWDAS----RCKRVRTMEG---HR------ 250 (474)
Q Consensus 197 ~~~~~~~~~~~~-~~V~~v~~s-----------p~g~~la~gs-~dg~I~iwd~~----~~~~~~~~~~---h~------ 250 (474)
++++..+.+++. +.....-|+ .+.++|++.+ .++.|.|+|+. ..+..++++. +.
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~ 131 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSR 131 (461)
T ss_dssp TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEE
T ss_pred ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCC
Confidence 577777777664 577777776 2346777766 67899999987 3455555542 11
Q ss_pred -CcEEEEEecCCEEEEEe--CC----CcEEEEECcCCcceEeeecC---cCCCEEEEEEecCCCEEEEEeC---------
Q 011971 251 -LRVGALAWSSSLLSSGS--RD----KSILQRDIRAQEDFVSKLSG---HKSEVCGLKWSYDNRELASGGN--------- 311 (474)
Q Consensus 251 -~~V~~l~~~~~~l~sgs--~d----g~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~spd~~~lasg~~--------- 311 (474)
..+.|+. ++++++++- .+ |-+.+.|-++.+ ....... ....-+.+-|.|..+.+++...
T Consensus 132 PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~-v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~G 209 (461)
T PF05694_consen 132 PHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETFE-VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKG 209 (461)
T ss_dssp EEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT---EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT-
T ss_pred CceeeecC-CccEEEEeccCCCCCCCCcEEEEcCcccc-ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccC
Confidence 1122221 245666642 22 456777766544 2333322 1234467778888888888653
Q ss_pred -----------CCcEEEEECCCCcceEEEccCC--CcEEEEEEC--CCCCcEEEEecCCCCCeEE-EEECCCCc----ee
Q 011971 312 -----------DNRLFVWNQHSTQPVLKYCEHT--AAVKAIAWS--PHLHGLLASGGGTADRCIR-FWNTTTNT----HL 371 (474)
Q Consensus 312 -----------Dg~v~iwd~~~~~~~~~~~~h~--~~V~~l~~s--p~~~~ll~sg~Gt~d~~I~-iwd~~~~~----~~ 371 (474)
..++.+||+.+.+.++++.-.. ..+..|.|. |+..+=++.+. -..+|. +|....++ .+
T Consensus 210 f~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a--Lss~i~~~~k~~~g~W~a~kV 287 (461)
T PF05694_consen 210 FNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA--LSSSIWRFYKDDDGEWAAEKV 287 (461)
T ss_dssp --TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE----EEEEEEEE-ETTEEEEEEE
T ss_pred CChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe--ccceEEEEEEcCCCCeeeeEE
Confidence 3579999999999999886432 234556664 44443333322 344444 44434432 11
Q ss_pred eeecC------------------CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC---ceeEEEc-C----------
Q 011971 372 SCMDT------------------GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM---SKLATLT-G---------- 419 (474)
Q Consensus 372 ~~~~~------------------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~---~~~~~l~-~---------- 419 (474)
-.+.. ..-|+.+.+|.|.++|+++ ....|.|+.||+... +.+.++. +
T Consensus 288 i~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs-~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~ 366 (461)
T PF05694_consen 288 IDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVS-NWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPV 366 (461)
T ss_dssp EEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEE-ETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TT
T ss_pred EECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEE-cccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcc
Confidence 11110 2347899999999999997 678999999999753 2333321 1
Q ss_pred -----CCccEEEEEECCCCCEEEEEe
Q 011971 420 -----HTFRVLYLAISPDGQTIVTGA 440 (474)
Q Consensus 420 -----h~~~V~~l~~spdg~~l~t~s 440 (474)
-.+...-|..|-||+.|+...
T Consensus 367 v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 367 VKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp S------S----EEE-TTSSEEEEE-
T ss_pred ccccccCCCCCeEEEccCCeEEEEEe
Confidence 012235677888999887653
No 394
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.54 E-value=1 Score=49.36 Aligned_cols=195 Identities=13% Similarity=0.082 Sum_probs=115.6
Q ss_pred CCEEEEEeCCCcEEEecCCCCeEEEEecCCCCc--------EEEEEe------------------cCCEEEEEeCCCcEE
Q 011971 220 NTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLR--------VGALAW------------------SSSLLSSGSRDKSIL 273 (474)
Q Consensus 220 g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~--------V~~l~~------------------~~~~l~sgs~dg~I~ 273 (474)
+..|++++.++.|.-.|..+++.+-.+.-.... ...+++ ....++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567788888889999999999888776532210 111222 234888899999999
Q ss_pred EEECcCCcceEeeecCcCCCE-------------EEEEEec--CCCEEEEEeC----------CCcEEEEECCCCcceEE
Q 011971 274 QRDIRAQEDFVSKLSGHKSEV-------------CGLKWSY--DNRELASGGN----------DNRLFVWNQHSTQPVLK 328 (474)
Q Consensus 274 iwd~~~~~~~~~~~~~h~~~V-------------~~l~~sp--d~~~lasg~~----------Dg~v~iwd~~~~~~~~~ 328 (474)
-.|.++++.+. .+. ..+.| ..+.-.| .+..+++|+. +|.|+-+|.++|+.+..
T Consensus 274 ALDA~TGk~~W-~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 274 ALDADTGKLCE-DFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEECCCCCEEE-Eec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 99999887432 221 11111 0111112 2346666643 68899999999998887
Q ss_pred EccC---------CC--------cE-EEEEECCCCCcEEEEecC----------------CCCCeEEEEECCCCceeeee
Q 011971 329 YCEH---------TA--------AV-KAIAWSPHLHGLLASGGG----------------TADRCIRFWNTTTNTHLSCM 374 (474)
Q Consensus 329 ~~~h---------~~--------~V-~~l~~sp~~~~ll~sg~G----------------t~d~~I~iwd~~~~~~~~~~ 374 (474)
+..- .+ .+ ..+++++....+++ +.| ...+.|.-.|.++|+....+
T Consensus 352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~-ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYL-PMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF 430 (764)
T ss_pred EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEE-eCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence 6421 00 01 23344554432222 111 12356777888899887766
Q ss_pred cC-CC---------CeEEEEEcC-CCC-eEEEEEecCCCeEEEEECCCCceeEEE
Q 011971 375 DT-GS---------QVCNLVWSK-NVN-ELVSTHGYSQNQIIVWRYPTMSKLATL 417 (474)
Q Consensus 375 ~~-~~---------~v~~l~~s~-~~~-~l~~~~g~~dg~I~iwd~~~~~~~~~l 417 (474)
.+ +. +..-+.+.. +|+ .=++.++..+|.+.++|-.+++.+...
T Consensus 431 Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 431 QTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 53 21 222222333 553 212333889999999999999887653
No 395
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.47 E-value=0.0037 Score=56.20 Aligned_cols=140 Identities=14% Similarity=0.107 Sum_probs=81.3
Q ss_pred EEEEeCCCcEEEEECCCCcceEEE-ccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ceeeeecCC-CCeEE
Q 011971 306 LASGGNDNRLFVWNQHSTQPVLKY-CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN-THLSCMDTG-SQVCN 382 (474)
Q Consensus 306 lasg~~Dg~v~iwd~~~~~~~~~~-~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~-~~~~~~~~~-~~v~~ 382 (474)
|..-+.||.|.-++++..+....- ..|...-..+.++ . -+++| +.+|.|.+|+..-. .....+... ..+.+
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~---~-~~~vG--~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~ 106 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTAS---A-KLMVG--TSDGAVYVFNWNLEGAHSDRVCSGEESIDL 106 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeecccC---c-eEEee--cccceEEEecCCccchHHHhhhccccccee
Confidence 444556777777776543221110 0111111112222 2 34444 37999999987621 111111122 22222
Q ss_pred -EEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCC-ccEEEEEECCCCCEEEEE--eCCCcEEEEeCCCC
Q 011971 383 -LVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHT-FRVLYLAISPDGQTIVTG--AGDETLRFWNVFPS 453 (474)
Q Consensus 383 -l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l~t~--s~Dg~I~iW~l~~~ 453 (474)
+.--.++.+..+ +..+|.|+.|++...+.+.....|+ ..+..+..+..+++|+.+ +.|..+++|++..-
T Consensus 107 ~Ip~~~~~~~~c~--~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 107 GIPNGRDSSLGCV--GAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ccccccccceeEE--eccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 222223333444 8899999999999888888888887 667777777777788887 88888899988754
No 396
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.40 E-value=0.012 Score=39.58 Aligned_cols=34 Identities=21% Similarity=0.494 Sum_probs=30.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe
Q 011971 207 IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (474)
Q Consensus 207 ~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~ 241 (474)
....|.+++|+|..++||+|+.+|.|.||.+ +++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 3567999999999999999999999999998 444
No 397
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.37 E-value=1.1 Score=43.40 Aligned_cols=268 Identities=13% Similarity=0.108 Sum_probs=125.9
Q ss_pred CcceeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecCC----CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe
Q 011971 167 DFYLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLGI----DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK 241 (474)
Q Consensus 167 d~~v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~~----~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~ 241 (474)
+..+..|.|.. +.-+++|..+.|..= ...|+.=....... .-...+|.|..+ ..+++| ..| +.+.-.+.++
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~~g~il~T-~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g-~ll~T~DgG~ 91 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGAYGTILKT-TDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPG-LLLHTTDGGK 91 (302)
T ss_dssp SS-EEEEEESSSS-EEEEETTTEEEEE-SSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETT-EEEEESSTTS
T ss_pred CCceEEEEEecCCEEEEEecCCEEEEE-CCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCc-eEEEecCCCC
Confidence 44577777775 777888887765432 23333222221111 224667888643 344555 445 3333334444
Q ss_pred EEEEec---CCCCcEEE-EEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEE
Q 011971 242 RVRTME---GHRLRVGA-LAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV 317 (474)
Q Consensus 242 ~~~~~~---~h~~~V~~-l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~i 317 (474)
.-..+. .-...... .+..+.....++..|.|+.= .+.+.........-.+.+..+.-++||++++++...+.+.-
T Consensus 92 tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s 170 (302)
T PF14870_consen 92 TWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSS 170 (302)
T ss_dssp S-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEE
T ss_pred CcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEE
Confidence 333321 11222222 33345555555566665432 22333333334455577889989999999998877666677
Q ss_pred EECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEE-CCCCceeee----ec-CCCCeEEEEEcCCCCe
Q 011971 318 WNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN-TTTNTHLSC----MD-TGSQVCNLVWSKNVNE 391 (474)
Q Consensus 318 wd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd-~~~~~~~~~----~~-~~~~v~~l~~s~~~~~ 391 (474)
||--...-...-......|.++.|.|++. |.+.+ ..+.|++=+ ....+.... +. ..-.+..++|.+++..
T Consensus 171 ~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw~~~---~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~ 246 (302)
T PF14870_consen 171 WDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LWMLA---RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEI 246 (302)
T ss_dssp E-TT-SS-EEEE--SSS-EEEEEE-TTS--EEEEE---TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-E
T ss_pred ecCCCccceEEccCccceehhceecCCCC-EEEEe---CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCE
Confidence 88543222222234567899999999976 44443 578888877 222222222 11 2334899999988777
Q ss_pred EEEEEecCCCeEEEEECCCCceeEEEc---CCCccEEEEEECCCCCEEEEEeCCCcEEEE
Q 011971 392 LVSTHGYSQNQIIVWRYPTMSKLATLT---GHTFRVLYLAISPDGQTIVTGAGDETLRFW 448 (474)
Q Consensus 392 l~~~~g~~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW 448 (474)
.++ | ..|.+ +.....++.-..-. .-...+..+.|..+.+-++ .+.+|.|.-|
T Consensus 247 wa~--g-g~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 247 WAV--G-GSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp EEE--E-STT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred EEE--e-CCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 776 4 33433 33334443333322 2344577788875544444 4588887665
No 398
>PRK10115 protease 2; Provisional
Probab=96.31 E-value=2.2 Score=46.45 Aligned_cols=240 Identities=7% Similarity=0.015 Sum_probs=119.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCC-----CcEEEecCCCCeEEEEecCCCCcEEEEEec--CCEEEEEeC-C-----CcEEEE
Q 011971 209 DSVCSVGWANRNTHLAVGTSH-----GKVQIWDASRCKRVRTMEGHRLRVGALAWS--SSLLSSGSR-D-----KSILQR 275 (474)
Q Consensus 209 ~~V~~v~~sp~g~~la~gs~d-----g~I~iwd~~~~~~~~~~~~h~~~V~~l~~~--~~~l~sgs~-d-----g~I~iw 275 (474)
-.+..+.|+|+|++|+.+... ..|++.|+.+++.+...-.... ..++|. ++.|+.... + ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 346678899999998887543 2588999988764322211111 458886 344444332 2 367888
Q ss_pred ECcCCcc-eEeeecCcCCCEE-EEEEecCCCEEEEEeC---CCcEEEEECC--CCcceEEEccCCCcEEEEEECCCCCcE
Q 011971 276 DIRAQED-FVSKLSGHKSEVC-GLKWSYDNRELASGGN---DNRLFVWNQH--STQPVLKYCEHTAAVKAIAWSPHLHGL 348 (474)
Q Consensus 276 d~~~~~~-~~~~~~~h~~~V~-~l~~spd~~~lasg~~---Dg~v~iwd~~--~~~~~~~~~~h~~~V~~l~~sp~~~~l 348 (474)
++.+... -...+........ .+..+.++++++..+. ++.+.+++.. .+.....+.........+. +..+..+
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEE
Confidence 8887631 1222332222233 3333447887665443 4578898853 3333222222222223332 3333334
Q ss_pred EEEecCCCCCeEEEEECCC-CceeeeecC--CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceeEEEc-CCCcc
Q 011971 349 LASGGGTADRCIRFWNTTT-NTHLSCMDT--GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT-MSKLATLT-GHTFR 423 (474)
Q Consensus 349 l~sg~Gt~d~~I~iwd~~~-~~~~~~~~~--~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~~~~~~l~-~h~~~ 423 (474)
+.+..+.....|...++.. ++....+.. ...+..+.+. ++.|+.. ...++.-+++-+.. ...+..+. .....
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~-~~~~g~~~l~~~~~~~~~~~~l~~~~~~~ 360 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVE-ERQRGLTSLRQINRKTREVIGIAFDDPAY 360 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEE-EEeCCEEEEEEEcCCCCceEEecCCCCce
Confidence 4443222334455556552 222223333 2357777777 4455553 44566555544432 22344443 22223
Q ss_pred EEEEEEC--CCCC-EEEEEeC---CCcEEEEeCCCCC
Q 011971 424 VLYLAIS--PDGQ-TIVTGAG---DETLRFWNVFPSP 454 (474)
Q Consensus 424 V~~l~~s--pdg~-~l~t~s~---Dg~I~iW~l~~~~ 454 (474)
+..+.++ +++. ++++.+. -+.++.+|+.++.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 3333444 3433 4444433 3567778876653
No 399
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.14 E-value=2 Score=47.14 Aligned_cols=194 Identities=11% Similarity=0.032 Sum_probs=112.1
Q ss_pred CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCC-------CEEEEEEcC----------------CCCEEEEEeCCCcEEE
Q 011971 178 HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDD-------SVCSVGWAN----------------RNTHLAVGTSHGKVQI 234 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~-------~V~~v~~sp----------------~g~~la~gs~dg~I~i 234 (474)
+.+++++.++.|+-.|..+|+..-.++..... ....+.+.. .+..+++++.|+.|.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 44555556778888888888876665432111 012233221 2447888999999999
Q ss_pred ecCCCCeEEEEecCCCCcEE-----------------EEEecCCEEEEEeC----------CCcEEEEECcCCcceEeee
Q 011971 235 WDASRCKRVRTMEGHRLRVG-----------------ALAWSSSLLSSGSR----------DKSILQRDIRAQEDFVSKL 287 (474)
Q Consensus 235 wd~~~~~~~~~~~~h~~~V~-----------------~l~~~~~~l~sgs~----------dg~I~iwd~~~~~~~~~~~ 287 (474)
.|.++++.+..+.. .+.|. .-...++.+++|+. +|.|+-+|+++++..-...
T Consensus 275 LDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 275 LDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999998876642 11110 01112467777753 6889999999887433221
Q ss_pred cCc--------CCC--------E-EEEEEecCCCEEEEEe------------------CCCcEEEEECCCCcceEEEccC
Q 011971 288 SGH--------KSE--------V-CGLKWSYDNRELASGG------------------NDNRLFVWNQHSTQPVLKYCEH 332 (474)
Q Consensus 288 ~~h--------~~~--------V-~~l~~spd~~~lasg~------------------~Dg~v~iwd~~~~~~~~~~~~h 332 (474)
.++ .+. + ..++++++..++..+. ..+.|.-.|.++++....++..
T Consensus 354 ~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~ 433 (764)
T TIGR03074 354 PGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTV 433 (764)
T ss_pred cCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEeccc
Confidence 110 011 1 1234444444443321 2356777888999888777541
Q ss_pred CC---------cEEEEEECC-CCC--cEEEEecCCCCCeEEEEECCCCceeeee
Q 011971 333 TA---------AVKAIAWSP-HLH--GLLASGGGTADRCIRFWNTTTNTHLSCM 374 (474)
Q Consensus 333 ~~---------~V~~l~~sp-~~~--~ll~sg~Gt~d~~I~iwd~~~~~~~~~~ 374 (474)
.. ...-+.+.. +|+ .+++.+. .+|.+.++|-++|+.+..+
T Consensus 434 ~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~--K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 434 HHDLWDMDVPAQPSLVDLPDADGTTVPALVAPT--KQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred CCccccccccCCceEEeeecCCCcEeeEEEEEC--CCCEEEEEECCCCCEEeec
Confidence 11 111222322 442 2455543 8999999999999887653
No 400
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.10 E-value=1.3 Score=41.73 Aligned_cols=246 Identities=14% Similarity=0.126 Sum_probs=144.5
Q ss_pred CCCEEEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCc-EEEecCCCCeEEEEecCCCCc--EEEEEec--CCEEEEEeCC
Q 011971 196 SSKVTKLCDLGIDDSVCSVGWANRN-THLAVGTSHGK-VQIWDASRCKRVRTMEGHRLR--VGALAWS--SSLLSSGSRD 269 (474)
Q Consensus 196 ~~~~~~~~~~~~~~~V~~v~~sp~g-~~la~gs~dg~-I~iwd~~~~~~~~~~~~h~~~--V~~l~~~--~~~l~sgs~d 269 (474)
.|+++....+ ......|.++|.- .-++.+-.-|+ ..++|....+...++...+.+ ...=.|+ +.+|+..-.|
T Consensus 57 aGk~v~~~~l--paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd 134 (366)
T COG3490 57 AGKIVFATAL--PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND 134 (366)
T ss_pred CCceeeeeec--ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCC
Confidence 3555444433 2344567888854 45666666665 578998887766665432221 1122344 4566655433
Q ss_pred -----CcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC------------------CCcEEEEECCCCcce
Q 011971 270 -----KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN------------------DNRLFVWNQHSTQPV 326 (474)
Q Consensus 270 -----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~------------------Dg~v~iwd~~~~~~~ 326 (474)
|.|-+||.+..-+.+..+..|.-....+.|.+||+.++.+.. .-.+.+.|..+++.+
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~li 214 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLI 214 (366)
T ss_pred CCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchh
Confidence 779999999776667778888888888999999999887643 112444454455443
Q ss_pred EEE--c--cCCCcEEEEEECCCCCcEEEEec-C-CCCCeEEEEECCCCceeeeecC--------CCCeEEEEEcCCCCeE
Q 011971 327 LKY--C--EHTAAVKAIAWSPHLHGLLASGG-G-TADRCIRFWNTTTNTHLSCMDT--------GSQVCNLVWSKNVNEL 392 (474)
Q Consensus 327 ~~~--~--~h~~~V~~l~~sp~~~~ll~sg~-G-t~d~~I~iwd~~~~~~~~~~~~--------~~~v~~l~~s~~~~~l 392 (474)
.+. . .+.-.|..++..++|.-++.+-- | ..|.-..+=-...++.+..+.. ...|-+++.+.+...+
T Consensus 215 ekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV 294 (366)
T COG3490 215 EKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLV 294 (366)
T ss_pred hhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeE
Confidence 322 2 34556888888888763333210 0 0121122222233444444432 2346778877766666
Q ss_pred EEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcEEEE
Q 011971 393 VSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFW 448 (474)
Q Consensus 393 ~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW 448 (474)
+.+ .-..+...+||..++..+..-.--. +..++- ...-++..+.+|.+.++
T Consensus 295 ~lT-SP~GN~~vi~da~tG~vv~~a~l~d--aaGva~--~~~gf~vssg~G~~~~~ 345 (366)
T COG3490 295 ALT-SPRGNRAVIWDAATGAVVSEAALPD--AAGVAA--AKGGFAVSSGQGRIIFY 345 (366)
T ss_pred EEe-cCCCCeEEEEEcCCCcEEecccccc--ccccee--ccCceEEecCCceEEec
Confidence 654 5567788999999998776533211 222333 33346666778888887
No 401
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.05 E-value=1.5 Score=47.58 Aligned_cols=94 Identities=15% Similarity=0.178 Sum_probs=57.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCC-CeEEEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEee
Q 011971 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASR-CKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSK 286 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~-~~~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 286 (474)
.-.|..|.++++|++||..+..| |.|-.+.. ......+.+-...|.|-. +.+... . .
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt-----------------~~v~~~---~-~ 141 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRT-----------------VPVDER---F-F 141 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEE-----------------EEechh---h-c
Confidence 45788999999999999888766 44444421 111112222222232221 111110 0 1
Q ss_pred ecCcCCCEEEEEEecC---CCEEEEEeCCCcEEEEECCCC
Q 011971 287 LSGHKSEVCGLKWSYD---NRELASGGNDNRLFVWNQHST 323 (474)
Q Consensus 287 ~~~h~~~V~~l~~spd---~~~lasg~~Dg~v~iwd~~~~ 323 (474)
...+...|..+.|+|. +.+|++=..|+++++||+...
T Consensus 142 ~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 142 TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 1234567889999985 588999999999999999754
No 402
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.03 E-value=1.9 Score=43.13 Aligned_cols=142 Identities=15% Similarity=0.176 Sum_probs=78.4
Q ss_pred CCEEEEEEcCCCCEEEEEe-----------CCC-cEEEecCCC--Ce--EEEEecCCCCcEEEEEecCCEEEEEeCCCcE
Q 011971 209 DSVCSVGWANRNTHLAVGT-----------SHG-KVQIWDASR--CK--RVRTMEGHRLRVGALAWSSSLLSSGSRDKSI 272 (474)
Q Consensus 209 ~~V~~v~~sp~g~~la~gs-----------~dg-~I~iwd~~~--~~--~~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I 272 (474)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+...-.....|++.++-|++++.....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~~~~i~ 93 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVATPPDIL 93 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEeCCCeEE
Confidence 4667889999998766542 223 677776432 22 2233433334557788764336666555433
Q ss_pred EEEECcCC-----c--ceEeeecC----cCCCEEEEEEecCCCEEEEEeCC-------------------CcEEEEECCC
Q 011971 273 LQRDIRAQ-----E--DFVSKLSG----HKSEVCGLKWSYDNRELASGGND-------------------NRLFVWNQHS 322 (474)
Q Consensus 273 ~iwd~~~~-----~--~~~~~~~~----h~~~V~~l~~spd~~~lasg~~D-------------------g~v~iwd~~~ 322 (474)
++.|.... + .++..+.. +......+.|.|||.+.++-+.. |.|.-+|..+
T Consensus 94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg 173 (367)
T TIGR02604 94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG 173 (367)
T ss_pred EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence 44455321 1 11222222 23457899999999877655421 4456666655
Q ss_pred CcceEEEccCCCcEEEEEECCCCCcEEEEe
Q 011971 323 TQPVLKYCEHTAAVKAIAWSPHLHGLLASG 352 (474)
Q Consensus 323 ~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg 352 (474)
++. ..+...-.....++|++++. ++++-
T Consensus 174 ~~~-e~~a~G~rnp~Gl~~d~~G~-l~~td 201 (367)
T TIGR02604 174 GKL-RVVAHGFQNPYGHSVDSWGD-VFFCD 201 (367)
T ss_pred CeE-EEEecCcCCCccceECCCCC-EEEEc
Confidence 443 22222223456899999876 55553
No 403
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=95.98 E-value=1.2 Score=45.79 Aligned_cols=279 Identities=16% Similarity=0.097 Sum_probs=156.5
Q ss_pred ccccCCCCCCCcceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 011971 157 KILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWD 236 (474)
Q Consensus 157 ~~l~ap~~~~d~~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd 236 (474)
.+-+...+..|..+..+-++-.+.+-+|.+..++.||..+++..++.......+|..+..+-.|. |.+|+.+| |.+.+
T Consensus 154 ~v~~~r~ll~d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e 231 (671)
T COG3292 154 AVKDVRPLLKDTPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQE 231 (671)
T ss_pred hccCccccccCccceeeeeeccCcEEEecCCcceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEc
Confidence 33344445566778888888878888899999999999999988877544456777777766665 78898887 77777
Q ss_pred CCCCeEEEEec-CCCCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcceE-eeecCcCCCEEEEEEecCCCEEEEEeCCC
Q 011971 237 ASRCKRVRTME-GHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFV-SKLSGHKSEVCGLKWSYDNRELASGGNDN 313 (474)
Q Consensus 237 ~~~~~~~~~~~-~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~~h~~~V~~l~~spd~~~lasg~~Dg 313 (474)
.+..+...... -....|..+.-+ ...+-.|+..|..+.--.+.+-... .....--+.|.++....+| .|-++..++
T Consensus 232 ~~G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dG-sLWv~t~~g 310 (671)
T COG3292 232 AEGWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDG-SLWVGTYGG 310 (671)
T ss_pred hhhccccccCCCCcchheeeeecccCCCEEEeecccceeEecCCCCccccccccCCccccccceeeccCC-CEeeeccCc
Confidence 66522221111 133445544444 3567777777765444333222111 1111122456666666666 466777777
Q ss_pred cEEEEECCCCcceEEEccC-CCcEEEEEECC--CCCcEEEEecCCCCCeEEEEECCCCceeeeec--CCCCeEEEEEcCC
Q 011971 314 RLFVWNQHSTQPVLKYCEH-TAAVKAIAWSP--HLHGLLASGGGTADRCIRFWNTTTNTHLSCMD--TGSQVCNLVWSKN 388 (474)
Q Consensus 314 ~v~iwd~~~~~~~~~~~~h-~~~V~~l~~sp--~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~~ 388 (474)
.+++-+.. ......+... ...+..++..| .+..+... +.-+.+.+-+-.+|..+.... .+..|+.+++...
T Consensus 311 iv~~~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~---ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~ 386 (671)
T COG3292 311 IVRYLTAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQL---NSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSR 386 (671)
T ss_pred eEEEecch-hhheeeeecCCCchhhhhccCchhcccceeec---cccceEEEecCCCCcEEEEeeeccccccchhhhccC
Confidence 66665432 1221222211 11112222222 11111111 123345555556666655543 2345777777775
Q ss_pred CCeEEEEEecCCCeEEEEECCC-CceeEEEcC-CCccEEEEEECCCCCEEEEEeCCCcEE
Q 011971 389 VNELVSTHGYSQNQIIVWRYPT-MSKLATLTG-HTFRVLYLAISPDGQTIVTGAGDETLR 446 (474)
Q Consensus 389 ~~~l~~~~g~~dg~I~iwd~~~-~~~~~~l~~-h~~~V~~l~~spdg~~l~t~s~Dg~I~ 446 (474)
+..-+ |+.++-+..|+-.+ +..+.+..+ ..++|..+-=.|+++ |..|+.+|.++
T Consensus 387 g~lWl---gs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 387 GRLWL---GSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred CcEEE---EecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEe
Confidence 55444 44555566677666 333333333 356788888888887 66688887654
No 404
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.97 E-value=0.91 Score=42.81 Aligned_cols=158 Identities=15% Similarity=0.104 Sum_probs=94.3
Q ss_pred CEEEEEEecCCCEEEEEe---CCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEE-ECCCC
Q 011971 293 EVCGLKWSYDNRELASGG---NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW-NTTTN 368 (474)
Q Consensus 293 ~V~~l~~spd~~~lasg~---~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iw-d~~~~ 368 (474)
.+.+.+++++++.+|... ....|+++... .....+. ....+..-.|++++. +++... .+...+++ +...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~-~W~v~~--~~~~~~~~~~~~~g 98 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGW-VWTVDD--GSGGVRVVRDSASG 98 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCC-EEEEEc--CCCceEEEEecCCC
Confidence 688999999999887766 33456666543 3222221 233788889999965 555543 34555555 33333
Q ss_pred cee-eeec---CCCCeEEEEEcCCCCeEEEEE-ecCCCeEEEEECC---CC------ceeEEEcCCCccEEEEEECCCCC
Q 011971 369 THL-SCMD---TGSQVCNLVWSKNVNELVSTH-GYSQNQIIVWRYP---TM------SKLATLTGHTFRVLYLAISPDGQ 434 (474)
Q Consensus 369 ~~~-~~~~---~~~~v~~l~~s~~~~~l~~~~-g~~dg~I~iwd~~---~~------~~~~~l~~h~~~V~~l~~spdg~ 434 (474)
... ..+. ....|..+.+||||..++.+. ...+++|.|--+. .+ ..+.........+..++|.+++.
T Consensus 99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 322 2222 112899999999999988864 2235777776543 22 11112223356789999999998
Q ss_pred EEEEEeCC-CcEEE-EeCCCCCCC
Q 011971 435 TIVTGAGD-ETLRF-WNVFPSPKS 456 (474)
Q Consensus 435 ~l~t~s~D-g~I~i-W~l~~~~~~ 456 (474)
+++.+... +.+.. ..+......
T Consensus 179 L~V~~~~~~~~~~~~v~~dG~~~~ 202 (253)
T PF10647_consen 179 LVVLGRSAGGPVVRLVSVDGGPST 202 (253)
T ss_pred EEEEeCCCCCceeEEEEccCCccc
Confidence 77766543 33444 555544433
No 405
>PRK13684 Ycf48-like protein; Provisional
Probab=95.97 E-value=1.9 Score=42.57 Aligned_cols=265 Identities=11% Similarity=0.059 Sum_probs=132.2
Q ss_pred eeeeeCC-CCcEEEEEcCCeEEEEeCCCCC-EEEEE-ec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEE
Q 011971 170 LNLVDWS-SHNVLAVGLGNCVYLWNACSSK-VTKLC-DL-GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRT 245 (474)
Q Consensus 170 v~~l~~s-~~~~la~~~d~~V~lwd~~~~~-~~~~~-~~-~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~ 245 (474)
+..|.|. +.+.+++|..+.|+.=. ..|+ ..+.. .+ .....+.++.|.++ ..+++| ..|.|..- .+.++.-..
T Consensus 48 l~~v~F~d~~~g~avG~~G~il~T~-DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~G-~~g~i~~S-~DgG~tW~~ 123 (334)
T PRK13684 48 LLDIAFTDPNHGWLVGSNRTLLETN-DGGETWEERSLDLPEENFRLISISFKGD-EGWIVG-QPSLLLHT-TDGGKNWTR 123 (334)
T ss_pred eEEEEEeCCCcEEEEECCCEEEEEc-CCCCCceECccCCcccccceeeeEEcCC-cEEEeC-CCceEEEE-CCCCCCCeE
Confidence 4556664 47778888877655432 2222 22211 11 12335778888643 344544 44443221 122222222
Q ss_pred ec---CCC-CcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEE-EEC
Q 011971 246 ME---GHR-LRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFV-WNQ 320 (474)
Q Consensus 246 ~~---~h~-~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~i-wd~ 320 (474)
+. ... ......+..+..+..++..|.|..=+ +.++........-...+.++.+.+++.++++|. .|.++. +|-
T Consensus 124 ~~~~~~~~~~~~~i~~~~~~~~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~ 201 (334)
T PRK13684 124 IPLSEKLPGSPYLITALGPGTAEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP 201 (334)
T ss_pred ccCCcCCCCCceEEEEECCCcceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEeC-CceEEEEcCC
Confidence 11 011 12222333444444445555553322 222222222223345688999999886665554 455543 222
Q ss_pred CCCc-ceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-----CCCeEEEEEcCCCCeEEE
Q 011971 321 HSTQ-PVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT-----GSQVCNLVWSKNVNELVS 394 (474)
Q Consensus 321 ~~~~-~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~-----~~~v~~l~~s~~~~~l~~ 394 (474)
.++ -......-...++++.+.+++. +++.| ..|.+++=....|..-..... ...+..+.+.+++..+++
T Consensus 202 -gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg---~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~ 276 (334)
T PRK13684 202 -GQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA---RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAG 276 (334)
T ss_pred -CCCeEEEeeCCCcccceeeeEcCCCC-EEEEe---cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEE
Confidence 122 1111223456789999999877 45554 467665433444443332222 234788899988776655
Q ss_pred EEecCCCeEEEEECCCCceeEEEc---CCCccEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 011971 395 THGYSQNQIIVWRYPTMSKLATLT---GHTFRVLYLAISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 395 ~~g~~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l 450 (474)
| .+|.|. .....++.-.... .-......+.|..+++.++ .+..|.|.-|+=
T Consensus 277 --G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 277 --G-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred --c-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 4 556554 3444444333332 2223577778776665555 557788877753
No 406
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.96 E-value=0.5 Score=43.05 Aligned_cols=135 Identities=12% Similarity=0.056 Sum_probs=84.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCC--------CcEEEEEecC---CEEEEEeCCCcEEEEE-
Q 011971 209 DSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHR--------LRVGALAWSS---SLLSSGSRDKSILQRD- 276 (474)
Q Consensus 209 ~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~--------~~V~~l~~~~---~~l~sgs~dg~I~iwd- 276 (474)
.....-..+|+|++ ..|...-.=-++....+.+-.-+.+|. .--+.++|+. .+.++-+.+-.|.-||
T Consensus 109 nR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred cccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 45556677899998 445432111122222222222222332 3335678873 3566677788887887
Q ss_pred -CcCCc----ceEeeecC----cCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCC
Q 011971 277 -IRAQE----DFVSKLSG----HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPH 344 (474)
Q Consensus 277 -~~~~~----~~~~~~~~----h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~ 344 (474)
..++. ..+..+.. .....-+++...+|++.++.-+.++|...|..+|+.+.+++-....|++++|--.
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 33332 11222221 1223345666778999999999999999999999999999988999999999754
No 407
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.95 E-value=1.5 Score=41.42 Aligned_cols=204 Identities=13% Similarity=0.110 Sum_probs=127.6
Q ss_pred CCCCCCCCCcccccCCCCCCCcceeeeeCCC--CcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEE
Q 011971 147 APRKVPRSPYKILDAPALQDDFYLNLVDWSS--HNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLA 224 (474)
Q Consensus 147 ~~r~i~~~p~~~l~ap~~~~d~~v~~l~~s~--~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la 224 (474)
..+..+..+.++...|.....--+..+.|+| ..++++.....-.||=...|+++..+.+..-...-.|.+..+|.+.+
T Consensus 65 ~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi 144 (316)
T COG3204 65 IARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVI 144 (316)
T ss_pred hhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEE
Confidence 3344444444444443443333499999999 34666666667777777889999998875555667788998888888
Q ss_pred EEeCCCcEEEecCCCCeEEEE-------ec--CC-CCcEEEEEecC--CEEEEEeCCCcEEEEECcCCcce--EeeecCc
Q 011971 225 VGTSHGKVQIWDASRCKRVRT-------ME--GH-RLRVGALAWSS--SLLSSGSRDKSILQRDIRAQEDF--VSKLSGH 290 (474)
Q Consensus 225 ~gs~dg~I~iwd~~~~~~~~~-------~~--~h-~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~h 290 (474)
+--.++.+.++.+.....+.. +. .+ ....-.++|++ +.|..+-+-.-+.||.+...... ......+
T Consensus 145 ~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~ 224 (316)
T COG3204 145 VDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDP 224 (316)
T ss_pred EehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCc
Confidence 777788888887765532211 11 22 56678899984 67777777777777766533211 1111112
Q ss_pred -------CCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCcceEEEccC---------CCcEEEEEECCCCCcEEEE
Q 011971 291 -------KSEVCGLKWSY-DNRELASGGNDNRLFVWNQHSTQPVLKYCEH---------TAAVKAIAWSPHLHGLLAS 351 (474)
Q Consensus 291 -------~~~V~~l~~sp-d~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h---------~~~V~~l~~sp~~~~ll~s 351 (474)
-..|.++.|++ .+.+|+-+.+++.|...|.... ++..+.-+ --....|+..++|..++++
T Consensus 225 ~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 225 TADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred ccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 23578888887 4566777788888888887643 33333211 1133567777776644443
No 408
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.94 E-value=0.015 Score=52.40 Aligned_cols=101 Identities=21% Similarity=0.193 Sum_probs=63.4
Q ss_pred CCEEEEEeCCCcEEEecCCCCeE-EEEecCCCCcEEEEEec---CCEEEEEeCCCcEEEEECcCCcceEeeecCcC-CCE
Q 011971 220 NTHLAVGTSHGKVQIWDASRCKR-VRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK-SEV 294 (474)
Q Consensus 220 g~~la~gs~dg~I~iwd~~~~~~-~~~~~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-~~V 294 (474)
+..+++|+.+|.|.+|...-... ...+..-...|-++.-. +.+.++++.||.|+.|++.-.+ .+.....|. ..+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k-~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK-VLGYVGQHNFESG 148 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCc-eeeeeccccCCCc
Confidence 56799999999999998762111 11111222333333333 3589999999999999997666 344445565 445
Q ss_pred EEEEEecCCCEEEEE--eCCCcEEEEECC
Q 011971 295 CGLKWSYDNRELASG--GNDNRLFVWNQH 321 (474)
Q Consensus 295 ~~l~~spd~~~lasg--~~Dg~v~iwd~~ 321 (474)
..+..+..++.+++. +.|..++.|++.
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchh
Confidence 555555555566666 666666666654
No 409
>PHA03098 kelch-like protein; Provisional
Probab=95.93 E-value=0.38 Score=50.73 Aligned_cols=190 Identities=12% Similarity=0.129 Sum_probs=88.3
Q ss_pred EEEecCCEEEEEeCCC------cEEEEECcCCcceEeeecC---cCCCEEEEEEecCCCEEEEEeCC-----CcEEEEEC
Q 011971 255 ALAWSSSLLSSGSRDK------SILQRDIRAQEDFVSKLSG---HKSEVCGLKWSYDNRELASGGND-----NRLFVWNQ 320 (474)
Q Consensus 255 ~l~~~~~~l~sgs~dg------~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~spd~~~lasg~~D-----g~v~iwd~ 320 (474)
++...+.+++.|+.++ .+..||..+.. ...+.. .......+. -++..++.||.+ ..+..||.
T Consensus 290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~ 365 (534)
T PHA03098 290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKS--WNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKP 365 (534)
T ss_pred EEEECCEEEEECCCcCCCCeeccEEEEeCCCCe--eeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcC
Confidence 4444556666666543 46677776654 122211 111122222 367788888875 34778887
Q ss_pred CCCcceEE--EccCCCcEEEEEECCCCCcEEEEecCCCC----CeEEEEECCCCceeee--ecCCCCeEEEEEcCCCCeE
Q 011971 321 HSTQPVLK--YCEHTAAVKAIAWSPHLHGLLASGGGTAD----RCIRFWNTTTNTHLSC--MDTGSQVCNLVWSKNVNEL 392 (474)
Q Consensus 321 ~~~~~~~~--~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d----~~I~iwd~~~~~~~~~--~~~~~~v~~l~~s~~~~~l 392 (474)
.+.+-... +....... +++. .+..+++.||-..+ ..+..||..+++-... +.....-.++. ..+ ..+
T Consensus 366 ~~~~W~~~~~lp~~r~~~-~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~-~~i 440 (534)
T PHA03098 366 GESKWREEPPLIFPRYNP-CVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHD-GKI 440 (534)
T ss_pred CCCceeeCCCcCcCCccc-eEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EEC-CEE
Confidence 76542211 11111111 1222 13457777752112 4588899876542221 11111111121 123 344
Q ss_pred EEEEecCC-------CeEEEEECCCCce--eEEEcCCCccEEEEEECCCCCEEEEEeCC-----CcEEEEeCCCCCC
Q 011971 393 VSTHGYSQ-------NQIIVWRYPTMSK--LATLTGHTFRVLYLAISPDGQTIVTGAGD-----ETLRFWNVFPSPK 455 (474)
Q Consensus 393 ~~~~g~~d-------g~I~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~l~t~s~D-----g~I~iW~l~~~~~ 455 (474)
++..|... ..+.+||..+.+- +..+.........+.+ +++.++.|+.+ ..|.+||.....-
T Consensus 441 yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 441 YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred EEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 44434321 2378888765432 2222111111122223 66677777654 4677888776543
No 410
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.88 E-value=0.26 Score=51.99 Aligned_cols=109 Identities=17% Similarity=0.298 Sum_probs=74.2
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEc-cCCCcEEEEEEC--CCCCcEEEEecCCCCCeEEEEECC---
Q 011971 293 EVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWS--PHLHGLLASGGGTADRCIRFWNTT--- 366 (474)
Q Consensus 293 ~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s--p~~~~ll~sg~Gt~d~~I~iwd~~--- 366 (474)
.+.-+.-+.-++..++-+....+.|||.+.+...+.-. .....|..+.|. |++..+++.| ..+.|.+|--.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG---f~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG---FPHHVLLYTQLRYD 107 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE---cCcEEEEEEccchh
Confidence 33444444444444444455679999999887444332 457889999995 6888899988 58888888532
Q ss_pred ------CCceeeeec----CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011971 367 ------TNTHLSCMD----TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRY 408 (474)
Q Consensus 367 ------~~~~~~~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 408 (474)
+...+..+. +..+|....|.++|..++. ..+++.|+|-
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~----sGNqlfv~dk 155 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVG----SGNQLFVFDK 155 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEE----eCCEEEEECC
Confidence 122344443 4467999999999988876 3588999874
No 411
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.75 E-value=1.8 Score=40.70 Aligned_cols=199 Identities=14% Similarity=0.155 Sum_probs=116.8
Q ss_pred EEEEEecC---CEEEEEeCCCc-EEEEECcCCcceEee-------ecCcCCCEEEEEEecCCCEEEEEeCC-----CcEE
Q 011971 253 VGALAWSS---SLLSSGSRDKS-ILQRDIRAQEDFVSK-------LSGHKSEVCGLKWSYDNRELASGGND-----NRLF 316 (474)
Q Consensus 253 V~~l~~~~---~~l~sgs~dg~-I~iwd~~~~~~~~~~-------~~~h~~~V~~l~~spd~~~lasg~~D-----g~v~ 316 (474)
...|++++ .-++.+-+-|+ ..++|......++.. +.+|. .||+||.+|...-+| |.|-
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViG 143 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIG 143 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEE
Confidence 33455553 45555655555 457787766543322 23333 489999999876554 6799
Q ss_pred EEECCCC-cceEEEccCCCcEEEEEECCCCCcEEEEecCC---------------CCCeEEEEECCCCceeeeecC----
Q 011971 317 VWNQHST-QPVLKYCEHTAAVKAIAWSPHLHGLLASGGGT---------------ADRCIRFWNTTTNTHLSCMDT---- 376 (474)
Q Consensus 317 iwd~~~~-~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt---------------~d~~I~iwd~~~~~~~~~~~~---- 376 (474)
|||.+.+ +.+-++..|.-....+.|.+||..+++.+||- ..-.+.+.|..+|..+.....
T Consensus 144 vYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l 223 (366)
T COG3490 144 VYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL 223 (366)
T ss_pred EEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh
Confidence 9998854 45667778888888999999999777766531 122355556566666554432
Q ss_pred -CCCeEEEEEcCCCCeEEEEEecC----CCeEEEEECCCCceeEEEcC-------CCccEEEEEECCCCCEEEEEe-CCC
Q 011971 377 -GSQVCNLVWSKNVNELVSTHGYS----QNQIIVWRYPTMSKLATLTG-------HTFRVLYLAISPDGQTIVTGA-GDE 443 (474)
Q Consensus 377 -~~~v~~l~~s~~~~~l~~~~g~~----dg~I~iwd~~~~~~~~~l~~-------h~~~V~~l~~spdg~~l~t~s-~Dg 443 (474)
.-.+..+...++|..++.. -+. |---.|=....++.+.-+.. ....|-+++.+.+..+++..+ ..+
T Consensus 224 ~~lSiRHld~g~dgtvwfgc-Qy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN 302 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWFGC-QYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGN 302 (366)
T ss_pred hhcceeeeeeCCCCcEEEEE-EeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCC
Confidence 2347777777777765542 110 00011111112233322221 223466778876555555444 445
Q ss_pred cEEEEeCCCCCCCCC
Q 011971 444 TLRFWNVFPSPKSQN 458 (474)
Q Consensus 444 ~I~iW~l~~~~~~~~ 458 (474)
...+||..++.....
T Consensus 303 ~~vi~da~tG~vv~~ 317 (366)
T COG3490 303 RAVIWDAATGAVVSE 317 (366)
T ss_pred eEEEEEcCCCcEEec
Confidence 678899998875443
No 412
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.71 E-value=0.41 Score=49.22 Aligned_cols=149 Identities=16% Similarity=0.273 Sum_probs=88.2
Q ss_pred CCCEEEEEEecCCCEEEEEe---CCCcEEEEECCCCcceEEEccCCCcEEEEEECCC----CCcEEEEecCCCCCeEEEE
Q 011971 291 KSEVCGLKWSYDNRELASGG---NDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPH----LHGLLASGGGTADRCIRFW 363 (474)
Q Consensus 291 ~~~V~~l~~spd~~~lasg~---~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~----~~~ll~sg~Gt~d~~I~iw 363 (474)
-.+|.+++|. ||+.++-.. .+|.+++=| .+.+ +.-..|..+.|.|- -..|||.- ..+.|.+|
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQ---HkkhVtVW 87 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQ---HKKHVTVW 87 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEe---ccceEEEE
Confidence 3578899996 565544322 223232211 1122 33356889999986 34688875 58899999
Q ss_pred ECCC-----Cceeee--ecC--CC--CeEEEEEcCCCCeEEEEEecCCCeEEEEECC--CCceeEEEcCCCccEEEEEEC
Q 011971 364 NTTT-----NTHLSC--MDT--GS--QVCNLVWSKNVNELVSTHGYSQNQIIVWRYP--TMSKLATLTGHTFRVLYLAIS 430 (474)
Q Consensus 364 d~~~-----~~~~~~--~~~--~~--~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~--~~~~~~~l~~h~~~V~~l~~s 430 (474)
.+.- ++.+.. -+. .- -...+.|+|....|++.++ +..-.++++. +......+ ...+.|.+.+|.
T Consensus 88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~--~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT 164 (671)
T PF15390_consen 88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA--RDVSVLPSVHCDSSRVKADI-KTSGLIHCACWT 164 (671)
T ss_pred EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec--CceeEeeeeeeCCceEEEec-cCCceEEEEEec
Confidence 8762 222211 111 11 1346789999998888643 2232344443 33333444 356789999999
Q ss_pred CCCCEEEEEeCC-CcEEEEeCCCC
Q 011971 431 PDGQTIVTGAGD-ETLRFWNVFPS 453 (474)
Q Consensus 431 pdg~~l~t~s~D-g~I~iW~l~~~ 453 (474)
.||+.|+.+-+. =.-++||=..+
T Consensus 165 ~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 165 KDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CcCCEEEEEeCCeEEEEEecCchh
Confidence 999988776443 34577875443
No 413
>PHA03098 kelch-like protein; Provisional
Probab=95.69 E-value=0.39 Score=50.67 Aligned_cols=144 Identities=13% Similarity=0.067 Sum_probs=73.4
Q ss_pred CCCEEEEEeCCC------cEEEecCCCCeEEEEe--cCCCCcEEEEEecCCEEEEEeCCC-----cEEEEECcCCcceEe
Q 011971 219 RNTHLAVGTSHG------KVQIWDASRCKRVRTM--EGHRLRVGALAWSSSLLSSGSRDK-----SILQRDIRAQEDFVS 285 (474)
Q Consensus 219 ~g~~la~gs~dg------~I~iwd~~~~~~~~~~--~~h~~~V~~l~~~~~~l~sgs~dg-----~I~iwd~~~~~~~~~ 285 (474)
++..+++|+.++ .+..||..+.+....- .........+...+.+++.|+.++ .+..||..+.. ..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~--W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESK--WR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCc--ee
Confidence 456666676542 5778888776653221 112223334455677788888763 46778876654 11
Q ss_pred eecC---cCCCEEEEEEecCCCEEEEEeCC------CcEEEEECCCCcceEE--EccCCCcEEEEEECCCCCcEEEEecC
Q 011971 286 KLSG---HKSEVCGLKWSYDNRELASGGND------NRLFVWNQHSTQPVLK--YCEHTAAVKAIAWSPHLHGLLASGGG 354 (474)
Q Consensus 286 ~~~~---h~~~V~~l~~spd~~~lasg~~D------g~v~iwd~~~~~~~~~--~~~h~~~V~~l~~sp~~~~ll~sg~G 354 (474)
.... ........ .-+++.++.||.+ +.+..||..+.+-... +........++.. +..+++.||.
T Consensus 372 ~~~~lp~~r~~~~~~--~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~ 446 (534)
T PHA03098 372 EEPPLIFPRYNPCVV--NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH---DGKIYVIGGI 446 (534)
T ss_pred eCCCcCcCCccceEE--EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE---CCEEEEECCc
Confidence 1111 11111111 2366777887742 4588899876543211 1111111112222 3457777752
Q ss_pred CCC------CeEEEEECCCCc
Q 011971 355 TAD------RCIRFWNTTTNT 369 (474)
Q Consensus 355 t~d------~~I~iwd~~~~~ 369 (474)
+.. ..+..||..+++
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred cCCCCCcccceEEEecCCCCc
Confidence 211 238889987754
No 414
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.65 Score=41.55 Aligned_cols=179 Identities=15% Similarity=0.130 Sum_probs=110.7
Q ss_pred eeeeCCCCcE-EEEEc--CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEE-EeCCCcEEEecCCCCeEEEEe
Q 011971 171 NLVDWSSHNV-LAVGL--GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAV-GTSHGKVQIWDASRCKRVRTM 246 (474)
Q Consensus 171 ~~l~~s~~~~-la~~~--d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~-gs~dg~I~iwd~~~~~~~~~~ 246 (474)
..+....+.+ .+.|. ...|++||+.+++......+. ...+..=-...-|+++.. .-.+|.-.++|..+.+++..+
T Consensus 49 QGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~ 127 (262)
T COG3823 49 QGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRF 127 (262)
T ss_pred cceeeeCCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhccc
Confidence 3344444433 33443 358999999999987776654 223332222222444433 345888899999988887776
Q ss_pred cCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcc---eEeeecCc-CCCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011971 247 EGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQED---FVSKLSGH-KSEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (474)
Q Consensus 247 ~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~h-~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~ 322 (474)
. ..+.=+.++..+..|+.+....++...|..+... ...+..+. -..++-+.|- ||..+|-.-.+..|...|..+
T Consensus 128 ~-y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~s 205 (262)
T COG3823 128 S-YEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDS 205 (262)
T ss_pred c-cCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCC
Confidence 5 3445577777777788877777888877765432 11122221 1233445553 566666666666677777777
Q ss_pred CcceEEEc------------cCCCcEEEEEECCCCCcEEEEe
Q 011971 323 TQPVLKYC------------EHTAAVKAIAWSPHLHGLLASG 352 (474)
Q Consensus 323 ~~~~~~~~------------~h~~~V~~l~~sp~~~~ll~sg 352 (474)
|+.+..+. .|..-.+.+++.|++..++++|
T Consensus 206 GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 206 GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 76655442 3455678999999998899986
No 415
>PRK13684 Ycf48-like protein; Provisional
Probab=95.61 E-value=2.6 Score=41.55 Aligned_cols=183 Identities=13% Similarity=0.095 Sum_probs=99.3
Q ss_pred eeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEE-ecCCCCe-EEEEecCCC
Q 011971 173 VDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQI-WDASRCK-RVRTMEGHR 250 (474)
Q Consensus 173 l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~i-wd~~~~~-~~~~~~~h~ 250 (474)
....++.+++++..+.|+.=+-.......+. .+....+.++.+.+++.++++|. .|.+.. +|- .++ -......-.
T Consensus 138 ~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~-~~~~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~ 214 (334)
T PRK13684 138 TALGPGTAEMATNVGAIYRTTDGGKNWEALV-EDAAGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSS 214 (334)
T ss_pred EEECCCcceeeeccceEEEECCCCCCceeCc-CCCcceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCc
Confidence 3344555666676666655443333333332 23456889999999987776664 565443 232 222 222223345
Q ss_pred CcEEEEEecC-CEEEEEeCCCcEEEEECcCCcceEeeec---CcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcce
Q 011971 251 LRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDFVSKLS---GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPV 326 (474)
Q Consensus 251 ~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~ 326 (474)
..+.++.+.+ ..++..+..|.+.+-..+.+........ .....+.++.+.+++..++ ++.+|.|.. ....++.-
T Consensus 215 ~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~tW 292 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKTW 292 (334)
T ss_pred ccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCCC
Confidence 6788888863 4444555667765432333322111111 1224578889988776555 455675553 34444332
Q ss_pred EEEc---cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011971 327 LKYC---EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWN 364 (474)
Q Consensus 327 ~~~~---~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd 364 (474)
.... .-......+.|..++. .++.| ..|.|.-|+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~G---~~G~il~~~ 329 (334)
T PRK13684 293 EKDPVGEEVPSNFYKIVFLDPEK-GFVLG---QRGVLLRYV 329 (334)
T ss_pred eECCcCCCCCcceEEEEEeCCCc-eEEEC---CCceEEEec
Confidence 2221 2223577788776655 56666 578887765
No 416
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.59 E-value=0.04 Score=37.01 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=29.9
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcc
Q 011971 291 KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP 325 (474)
Q Consensus 291 ~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~ 325 (474)
...|..++|+|...+||.|..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4543
No 417
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.49 E-value=1.1 Score=46.26 Aligned_cols=169 Identities=14% Similarity=0.267 Sum_probs=100.5
Q ss_pred CCEEEEEEcCCCCEEEEEe---CCCcEEEecCCCCeEEEEecCCCCcEEEEEecC------CEEEEEeCCCcEEEEECcC
Q 011971 209 DSVCSVGWANRNTHLAVGT---SHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS------SLLSSGSRDKSILQRDIRA 279 (474)
Q Consensus 209 ~~V~~v~~sp~g~~la~gs---~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~------~~l~sgs~dg~I~iwd~~~ 279 (474)
.+|..++|. ||+.++-.. .+|.+++=| .+.+ |.-..|..+.|.+ ..|++.-....|.+|.+..
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 478889998 565544332 234443332 2223 3334688999974 3577777788999998863
Q ss_pred Cc----ceEeeecCc-----CCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc--ceEEEccCCCcEEEEEECCCCCcE
Q 011971 280 QE----DFVSKLSGH-----KSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ--PVLKYCEHTAAVKAIAWSPHLHGL 348 (474)
Q Consensus 280 ~~----~~~~~~~~h-----~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~--~~~~~~~h~~~V~~l~~sp~~~~l 348 (474)
.. +.+.....+ .---.++.|+|....|++-.....-.+++++... ....+ ...+-|.|.+|.+||..|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEE
Confidence 21 111111111 1123567899999888877665555566665432 22333 557889999999999998
Q ss_pred EEEecCCCCCeEEEEECCCCce-----eeeecCCCCeEEEEEcCC
Q 011971 349 LASGGGTADRCIRFWNTTTNTH-----LSCMDTGSQVCNLVWSKN 388 (474)
Q Consensus 349 l~sg~Gt~d~~I~iwd~~~~~~-----~~~~~~~~~v~~l~~s~~ 388 (474)
+++-| ..=.-++||-..... -..++.++.|+++.-.-+
T Consensus 171 VVAvG--SsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d 213 (671)
T PF15390_consen 171 VVAVG--SSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVD 213 (671)
T ss_pred EEEeC--CeEEEEEecCchhhhhhCCcceeecCCCceEEEEEecc
Confidence 88765 344567888554322 123444556666554433
No 418
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.43 E-value=0.0019 Score=64.03 Aligned_cols=146 Identities=19% Similarity=0.292 Sum_probs=104.5
Q ss_pred CEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee
Q 011971 293 EVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLS 372 (474)
Q Consensus 293 ~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~ 372 (474)
..-...|-+.+.-++.++-+..|..||-. ++..... ...+....++|.-++..+++.+- ..+.+.+||+.+....+
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~-n~tg~aldm~wDkegdvlavlAe--k~~piylwd~n~eytqq 111 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILEL-NPTGKALDMAWDKEGDVLAVLAE--KTGPIYLWDVNSEYTQQ 111 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhh-cceeccc-CCchhHhhhhhccccchhhhhhh--cCCCeeechhhhhhHHH
Confidence 34456688887779999999999999954 4444443 34555668889888887766654 68899999997643221
Q ss_pred -eecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCCCcE
Q 011971 373 -CMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETL 445 (474)
Q Consensus 373 -~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~Dg~I 445 (474)
.......-.-+.|++.+.+++. |...+.+.|++..+...+.....|..+++++++.+.+. .+.++.|..+
T Consensus 112 LE~gg~~s~sll~wsKg~~el~i--g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L 182 (615)
T KOG2247|consen 112 LESGGTSSKSLLAWSKGTPELVI--GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTL 182 (615)
T ss_pred HhccCcchHHHHhhccCCccccc--cccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHH
Confidence 1112222333789999999999 88999999999887777766656999999999999874 4445555443
No 419
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=0.21 Score=54.77 Aligned_cols=141 Identities=12% Similarity=0.169 Sum_probs=92.3
Q ss_pred CEEEEEEecCCCEEEEE--eCCCcEEEEECCCCcce-----EEEc------cCCCcEEEEEECCCCCcEEEEecCCCCCe
Q 011971 293 EVCGLKWSYDNRELASG--GNDNRLFVWNQHSTQPV-----LKYC------EHTAAVKAIAWSPHLHGLLASGGGTADRC 359 (474)
Q Consensus 293 ~V~~l~~spd~~~lasg--~~Dg~v~iwd~~~~~~~-----~~~~------~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~ 359 (474)
.|..+...+|+...++. +++-.|+.||++....- .-+. .....+.++.|.|.-....+... .|+.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l--~dls 179 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL--SDLS 179 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc--cccc
Confidence 44555566676554443 44447899998753211 1111 23345678899987554444443 6899
Q ss_pred EEEEECCCC-ceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcC----CCccEEEEEECCCCC
Q 011971 360 IRFWNTTTN-THLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTG----HTFRVLYLAISPDGQ 434 (474)
Q Consensus 360 I~iwd~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~----h~~~V~~l~~spdg~ 434 (474)
|++..+..- ..+..+......++++|+|.|+.+++ |...|.+.-|.. +++....+.+ ...+|.+|+|-..-.
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~i--G~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFI--GRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeE--ecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEeccee
Confidence 988876543 23344566778999999999999999 999999988864 4443333332 247899999987766
Q ss_pred EEEE
Q 011971 435 TIVT 438 (474)
Q Consensus 435 ~l~t 438 (474)
+|++
T Consensus 257 flvv 260 (1405)
T KOG3630|consen 257 FLVV 260 (1405)
T ss_pred EEEE
Confidence 6664
No 420
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.38 E-value=3.6 Score=41.66 Aligned_cols=267 Identities=12% Similarity=0.142 Sum_probs=149.7
Q ss_pred CcEEEEEcCCeEEEEeCCCCCEE---EEEecCCCCCEEEEEEcC-----CCCEEEEEeCCCcEEEecCCC--C-------
Q 011971 178 HNVLAVGLGNCVYLWNACSSKVT---KLCDLGIDDSVCSVGWAN-----RNTHLAVGTSHGKVQIWDASR--C------- 240 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~~~~~---~~~~~~~~~~V~~v~~sp-----~g~~la~gs~dg~I~iwd~~~--~------- 240 (474)
+.+++++..|.++||+...+... .+++..-..+|..|..-. +...||+- .-..+.||.+.. +
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCCCcccCcE
Confidence 46777778999999998654421 233334567888887643 23456664 456788887721 1
Q ss_pred eEEEEecCCCCc--EEEEE---ec----CCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeC
Q 011971 241 KRVRTMEGHRLR--VGALA---WS----SSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGN 311 (474)
Q Consensus 241 ~~~~~~~~h~~~--V~~l~---~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~ 311 (474)
-.+..+..|.-. ...++ |. .+.+++-+.||.+.+++-+.-. ....+.. ---.-.+.+.+....|++++.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~-f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA-FSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE-EEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 122222233322 22222 22 2689999999999999876533 2222222 222334567788888999988
Q ss_pred CCcEEEEECCCC--------------------c---ceEEEcc--CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECC
Q 011971 312 DNRLFVWNQHST--------------------Q---PVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTT 366 (474)
Q Consensus 312 Dg~v~iwd~~~~--------------------~---~~~~~~~--h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~ 366 (474)
+..|..|....- + +-.++.- .--.+..+.++.....+++-| .+.+.+.+-
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg----er~Lf~l~~- 269 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG----ERSLFCLKD- 269 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe----cceEEEEcC-
Confidence 888888874210 0 1111111 111233344444445566665 677777775
Q ss_pred CCceeeeecCCCCeEEEE-Ec----CCCC---eEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEE---ECCCCCE
Q 011971 367 TNTHLSCMDTGSQVCNLV-WS----KNVN---ELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLA---ISPDGQT 435 (474)
Q Consensus 367 ~~~~~~~~~~~~~v~~l~-~s----~~~~---~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~---~spdg~~ 435 (474)
+|......+.+....+++ |. ..+. .+++ ++.++.+.||.=.+.. -..+....+| ++. |..-...
T Consensus 270 ~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV--~t~t~~LlVy~d~~L~--WsA~l~~~PV-al~v~~~~~~~G~ 344 (418)
T PF14727_consen 270 NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLV--GTHTGTLLVYEDTTLV--WSAQLPHVPV-ALSVANFNGLKGL 344 (418)
T ss_pred CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEE--EecCCeEEEEeCCeEE--EecCCCCCCE-EEEecccCCCCce
Confidence 466555555444333322 21 2222 2444 6789999999744332 2222222222 333 2233458
Q ss_pred EEEEeCCCcEEEEeCCCCCCCC
Q 011971 436 IVTGAGDETLRFWNVFPSPKSQ 457 (474)
Q Consensus 436 l~t~s~Dg~I~iW~l~~~~~~~ 457 (474)
|++-+.+|.|.+-=+.+.+...
T Consensus 345 IV~Ls~~G~L~v~YLGTdPs~~ 366 (418)
T PF14727_consen 345 IVSLSDEGQLSVSYLGTDPSLF 366 (418)
T ss_pred EEEEcCCCcEEEEEeCCCCccc
Confidence 8999999999998887776443
No 421
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.36 E-value=5.5 Score=43.71 Aligned_cols=278 Identities=12% Similarity=0.111 Sum_probs=147.6
Q ss_pred eeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCC------CEEEEEeCCCcEEEecC-CCCeE
Q 011971 170 LNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRN------THLAVGTSHGKVQIWDA-SRCKR 242 (474)
Q Consensus 170 v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g------~~la~gs~dg~I~iwd~-~~~~~ 242 (474)
+..+..+...++.++.++.+...++..+.............|.|+.++|-| +++++|..+..+.+.-. .+...
T Consensus 492 i~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~ 571 (1096)
T KOG1897|consen 492 IGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL 571 (1096)
T ss_pred EEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce
Confidence 344444445566666666676667766664444433446789999999753 27889988766554432 22222
Q ss_pred EEEe--cC--CCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcceEe---eecCcCCCEEEEEEecCCCEEEEEeCCC
Q 011971 243 VRTM--EG--HRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQEDFVS---KLSGHKSEVCGLKWSYDNRELASGGNDN 313 (474)
Q Consensus 243 ~~~~--~~--h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~---~~~~h~~~V~~l~~spd~~~lasg~~Dg 313 (474)
+... .+ -...|.-..+- .++|.++..||.+.-+-+........ +..-...++.--.|+..++.-+.+..|.
T Consensus 572 ~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdr 651 (1096)
T KOG1897|consen 572 ITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDR 651 (1096)
T ss_pred eeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCC
Confidence 2221 11 22334444443 58999999999998775544331111 1112345565556766666656666666
Q ss_pred cEEEEECCCCcceEEEccCCCcEE-EEEECC-CCCcEEEEecCCCCCeEEEEECCCCc--eeeeecCCCCeEEEEEcCCC
Q 011971 314 RLFVWNQHSTQPVLKYCEHTAAVK-AIAWSP-HLHGLLASGGGTADRCIRFWNTTTNT--HLSCMDTGSQVCNLVWSKNV 389 (474)
Q Consensus 314 ~v~iwd~~~~~~~~~~~~h~~~V~-~l~~sp-~~~~ll~sg~Gt~d~~I~iwd~~~~~--~~~~~~~~~~v~~l~~s~~~ 389 (474)
-..+|..+ ++.+..--.- ..+. .+.|+. ...--++++ ..+.+++.-+..-+ .++++..+.....+++.+..
T Consensus 652 P~viY~~n-~kLv~spls~-kev~~~c~f~s~a~~d~l~~~---~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~s 726 (1096)
T KOG1897|consen 652 PTVIYSSN-GKLVYSPLSL-KEVNHMCPFNSDAYPDSLASA---NGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESS 726 (1096)
T ss_pred CEEEEecC-CcEEEeccch-HHhhhhcccccccCCceEEEe---cCCceEEEEecchhhcceeeecCCCChhheEecccc
Confidence 66666543 2222211000 0111 111211 112233333 35667777655432 23446666677777777744
Q ss_pred CeEEEEEe---------cCC---CeEEEEECCCCceeEEEcCC----CccEEEEEECCC-CCEEEEEeC----------C
Q 011971 390 NELVSTHG---------YSQ---NQIIVWRYPTMSKLATLTGH----TFRVLYLAISPD-GQTIVTGAG----------D 442 (474)
Q Consensus 390 ~~l~~~~g---------~~d---g~I~iwd~~~~~~~~~l~~h----~~~V~~l~~spd-g~~l~t~s~----------D 442 (474)
..+.+.+. ... ..++++|-.+.+.+...+-. ...|.++.|..| +.+++.|.. .
T Consensus 727 l~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~ 806 (1096)
T KOG1897|consen 727 LTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVN 806 (1096)
T ss_pred eEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCccc
Confidence 44443210 011 24566666666555433211 123555568877 667777753 4
Q ss_pred CcEEEEeCCC
Q 011971 443 ETLRFWNVFP 452 (474)
Q Consensus 443 g~I~iW~l~~ 452 (474)
|.|.++.+..
T Consensus 807 GRIivfe~~e 816 (1096)
T KOG1897|consen 807 GRIIVFEFEE 816 (1096)
T ss_pred ceEEEEEEec
Confidence 7788888887
No 422
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.10 E-value=0.026 Score=60.07 Aligned_cols=152 Identities=14% Similarity=0.216 Sum_probs=88.7
Q ss_pred CeEEEEeCC--CCCEEEEEec----CCCCCEEEEEEcC---CCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEE
Q 011971 187 NCVYLWNAC--SSKVTKLCDL----GIDDSVCSVGWAN---RNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALA 257 (474)
Q Consensus 187 ~~V~lwd~~--~~~~~~~~~~----~~~~~V~~v~~sp---~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~ 257 (474)
|.+.||++. .|++...+.+ .....+.-|.|.| +.-++..+-.+|.|++..+.+... ..+.+|..++..++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 567788764 4444332222 2344556777776 556788888889988877664433 44556888888877
Q ss_pred ecC-CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEEC-----CCCcceEEEcc
Q 011971 258 WSS-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ-----HSTQPVLKYCE 331 (474)
Q Consensus 258 ~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~-----~~~~~~~~~~~ 331 (474)
|-. .++...+ .+|||..||.++.||.++.|.+ ....+++..+.
T Consensus 232 ~~~~g~~~l~~-------------------------------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkp 280 (1283)
T KOG1916|consen 232 FFAEGVLKLAS-------------------------------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKP 280 (1283)
T ss_pred HHhhchhhhee-------------------------------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCC
Confidence 642 2221111 6788888888888887766654 23345555666
Q ss_pred CCC-cEEEEEECCC-------CCc-EEEEecCCCCCeEEEEECCCCcee
Q 011971 332 HTA-AVKAIAWSPH-------LHG-LLASGGGTADRCIRFWNTTTNTHL 371 (474)
Q Consensus 332 h~~-~V~~l~~sp~-------~~~-ll~sg~Gt~d~~I~iwd~~~~~~~ 371 (474)
|.+ +-.|.-++.+ +.+ +++++. ...+.+++|.....+|+
T Consensus 281 hd~~p~vC~lc~~~~~~~v~i~~w~~~Ittt-d~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 281 HDKHPRVCWLCHKQEILVVSIGKWVLRITTT-DVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCCceeeeeccccccCCccceeEEEEecc-cCCcceeEeeccchhhh
Confidence 653 2222222221 112 333332 35677999998877766
No 423
>PRK10115 protease 2; Provisional
Probab=95.00 E-value=6.7 Score=42.74 Aligned_cols=176 Identities=8% Similarity=0.029 Sum_probs=94.2
Q ss_pred CcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCC------CcEEEEECCCC--cceEEEccCCCcEE-EEE
Q 011971 270 KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGND------NRLFVWNQHST--QPVLKYCEHTAAVK-AIA 340 (474)
Q Consensus 270 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~D------g~v~iwd~~~~--~~~~~~~~h~~~V~-~l~ 340 (474)
..|++.|+.++......+.+- -..++|.+|++.|+....+ ..|+.+++.++ +....+.+...... .+.
T Consensus 153 ~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~ 229 (686)
T PRK10115 153 YGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLH 229 (686)
T ss_pred EEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEE
Confidence 357888887665222222221 1468999999877766542 36888898887 33444443333333 333
Q ss_pred ECCCCCcEEEEecCCCCCeEEEEECC--CCceeeeecCCCCe-EEEEEcCCCCeEEEEEec--CCCeEEEEECCCCceeE
Q 011971 341 WSPHLHGLLASGGGTADRCIRFWNTT--TNTHLSCMDTGSQV-CNLVWSKNVNELVSTHGY--SQNQIIVWRYPTMSKLA 415 (474)
Q Consensus 341 ~sp~~~~ll~sg~Gt~d~~I~iwd~~--~~~~~~~~~~~~~v-~~l~~s~~~~~l~~~~g~--~dg~I~iwd~~~~~~~~ 415 (474)
.+.++.++++......++.+.+++.. ++.....+.....+ ..+. .. +..++..+.. ....|...++.......
T Consensus 230 ~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~ 307 (686)
T PRK10115 230 KTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDEQQWE 307 (686)
T ss_pred EcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-CCEEEEEEcCCCCCceEEEecCCCcccCe
Confidence 34477777766554566789999943 34332223332222 2222 22 3444443222 23344444544222223
Q ss_pred EEcCC-C-ccEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 011971 416 TLTGH-T-FRVLYLAISPDGQTIVTGAGDETLRFWNVF 451 (474)
Q Consensus 416 ~l~~h-~-~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~ 451 (474)
.+..+ . ..|..+.+. .+.++++...+|.-+++-+.
T Consensus 308 ~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 308 ELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 44444 3 367788887 33456666677776666554
No 424
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.88 E-value=3.4 Score=38.79 Aligned_cols=189 Identities=12% Similarity=0.081 Sum_probs=113.9
Q ss_pred EEEEec-CCCCcEEEEEe-cC-CEEEEEeCCC--cEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEE
Q 011971 242 RVRTME-GHRLRVGALAW-SS-SLLSSGSRDK--SILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLF 316 (474)
Q Consensus 242 ~~~~~~-~h~~~V~~l~~-~~-~~l~sgs~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~ 316 (474)
.+.++. ....-...+.| ++ .++-+.+.-| .|+.+|+.+++..........---.+++... ++.....-.++...
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEE
Confidence 444444 22334556777 54 4555666655 6889999988743222222233334555543 34445556789999
Q ss_pred EEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC------CCeEEEEEcCCCC
Q 011971 317 VWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTG------SQVCNLVWSKNVN 390 (474)
Q Consensus 317 iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~------~~v~~l~~s~~~~ 390 (474)
+||..+.+.+.++.- .+.-..++ .++..|+.+-| ...|.++|..+.+....+... ..+..+.|. +|.
T Consensus 114 ~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDG---S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~ 186 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDG---SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK 186 (264)
T ss_dssp EEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-S---SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE
T ss_pred EEccccceEEEEEec-CCcceEEE--cCCCEEEEECC---ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE
Confidence 999999988888843 34556776 45677888765 678999999988877766522 246667776 443
Q ss_pred eEEEEEecCCCeEEEEECCCCceeEEEcC------------C---CccEEEEEECCCCCEEEEEe
Q 011971 391 ELVSTHGYSQNQIIVWRYPTMSKLATLTG------------H---TFRVLYLAISPDGQTIVTGA 440 (474)
Q Consensus 391 ~l~~~~g~~dg~I~iwd~~~~~~~~~l~~------------h---~~~V~~l~~spdg~~l~t~s 440 (474)
..+= -.....|...|..+++.+..+.- + ..-.+.+|+.|....|...+
T Consensus 187 IyAN--VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 187 IYAN--VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEE--ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEE--eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 3333 55678888899999998877631 1 24578999988666554444
No 425
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.79 E-value=0.88 Score=42.91 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=72.2
Q ss_pred cEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEE-CCCCce
Q 011971 335 AVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWR-YPTMSK 413 (474)
Q Consensus 335 ~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd-~~~~~~ 413 (474)
.+.+.++++++..+.+...+.....+.++. .+...........+..-.|++++...++ ...+...+++. ..++..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g~~l~~PS~d~~g~~W~v--~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTGGSLTRPSWDPDGWVWTV--DDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccCCccccccccCCCCEEEE--EcCCCceEEEEecCCCcc
Confidence 688999999998777765211344455554 4444444435568888999999776666 44555555553 233322
Q ss_pred e-EEEcC--CCccEEEEEECCCCCEEEEEe---CCCcEEEEeCCCC
Q 011971 414 L-ATLTG--HTFRVLYLAISPDGQTIVTGA---GDETLRFWNVFPS 453 (474)
Q Consensus 414 ~-~~l~~--h~~~V~~l~~spdg~~l~t~s---~Dg~I~iW~l~~~ 453 (474)
. ..+.. -...|..+.+||||..++... .++.|.+=-+...
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 1 11221 122899999999999877654 4577877766533
No 426
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.76 E-value=0.47 Score=47.86 Aligned_cols=142 Identities=15% Similarity=0.150 Sum_probs=95.5
Q ss_pred CCCCEEE-EEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEecC---------CEEEEEeCCCcEEEEECcCCcceEeee
Q 011971 218 NRNTHLA-VGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWSS---------SLLSSGSRDKSILQRDIRAQEDFVSKL 287 (474)
Q Consensus 218 p~g~~la-~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~~---------~~l~sgs~dg~I~iwd~~~~~~~~~~~ 287 (474)
.+..+|+ .|.....++-.|++.|+.+....-|..- -+.|+| ..-++|-.+..|.-.|.+.....+...
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 3444444 3444556777889999999998877765 344543 355667777888888887665322221
Q ss_pred cCcCCCEEEEEEe----cCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEE
Q 011971 288 SGHKSEVCGLKWS----YDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFW 363 (474)
Q Consensus 288 ~~h~~~V~~l~~s----pd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iw 363 (474)
...+.++.-.|+ ....++|+|++.|.|++||--.-.....+.+-..+|..+..+.+|.++|++| ...|.+-
T Consensus 555 -esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC----k~yllL~ 629 (776)
T COG5167 555 -ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC----KNYLLLT 629 (776)
T ss_pred -eehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee----cceEEEE
Confidence 122222222232 2445999999999999999654444445556678999999999999999987 5677777
Q ss_pred ECC
Q 011971 364 NTT 366 (474)
Q Consensus 364 d~~ 366 (474)
|+.
T Consensus 630 d~~ 632 (776)
T COG5167 630 DVP 632 (776)
T ss_pred ecc
Confidence 764
No 427
>PHA02790 Kelch-like protein; Provisional
Probab=94.64 E-value=2 Score=44.61 Aligned_cols=130 Identities=12% Similarity=0.071 Sum_probs=70.6
Q ss_pred eEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC--CcEEEecCCCCeEEE--EecCCCCcEEEEEecCCEE
Q 011971 188 CVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH--GKVQIWDASRCKRVR--TMEGHRLRVGALAWSSSLL 263 (474)
Q Consensus 188 ~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d--g~I~iwd~~~~~~~~--~~~~h~~~V~~l~~~~~~l 263 (474)
.+..||..+++...+-.+.....-.+++ .-+|...++|+.+ ..+..||..+.+... .+............++.+.
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IY 366 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIY 366 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEE
Confidence 6788999888776655443222112222 2357777777754 358888876654332 2221222334445567778
Q ss_pred EEEeCCC---cEEEEECcCCcceEe--eecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc
Q 011971 264 SSGSRDK---SILQRDIRAQEDFVS--KLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ 324 (474)
Q Consensus 264 ~sgs~dg---~I~iwd~~~~~~~~~--~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~ 324 (474)
+.|+.++ .+..||.++.. ... .+.........+ .-++...+.|+ .+.+||..+.+
T Consensus 367 viGG~~~~~~~ve~ydp~~~~-W~~~~~m~~~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~~ 426 (480)
T PHA02790 367 VIGGHSETDTTTEYLLPNHDQ-WQFGPSTYYPHYKSCAL--VFGRRLFLVGR---NAEFYCESSNT 426 (480)
T ss_pred EecCcCCCCccEEEEeCCCCE-EEeCCCCCCccccceEE--EECCEEEEECC---ceEEecCCCCc
Confidence 8887654 46778877654 111 111111112222 23566667764 57788887654
No 428
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.62 E-value=2 Score=45.54 Aligned_cols=173 Identities=16% Similarity=0.193 Sum_probs=95.7
Q ss_pred ceeeeeCCC-CcEEEEEcCCeEEEEeCCCCCEEEEEecC---CCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEE
Q 011971 169 YLNLVDWSS-HNVLAVGLGNCVYLWNACSSKVTKLCDLG---IDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVR 244 (474)
Q Consensus 169 ~v~~l~~s~-~~~la~~~d~~V~lwd~~~~~~~~~~~~~---~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~ 244 (474)
.+-.+.|+. ..+|.+..+|.|++|+......... ..+ ....|..+.+..+| +++-..+|.|.+-.-.....++
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~-svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~ 161 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESN-SVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLR 161 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecchhhhccc-ccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhh
Confidence 477899998 7899999999999999875544331 222 12345555555555 4445556666555433222333
Q ss_pred EecC-CCCcEEEEEec---CC----EEEEEe-CCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcE
Q 011971 245 TMEG-HRLRVGALAWS---SS----LLSSGS-RDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRL 315 (474)
Q Consensus 245 ~~~~-h~~~V~~l~~~---~~----~l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v 315 (474)
.+.. ......+-+|. ++ .++-.. ..+ ..++-..........+....+.+..+..||+.++|+--..+|.|
T Consensus 162 ~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i 240 (829)
T KOG2280|consen 162 KMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKI 240 (829)
T ss_pred hCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcE
Confidence 3332 11222223342 21 111111 011 01111111111122222223567888999999999999999999
Q ss_pred EEEECCCCcceEEEcc-CCCcEEEEEECCCC
Q 011971 316 FVWNQHSTQPVLKYCE-HTAAVKAIAWSPHL 345 (474)
Q Consensus 316 ~iwd~~~~~~~~~~~~-h~~~V~~l~~sp~~ 345 (474)
.+-+....+....+.. ...+...++|+.+.
T Consensus 241 ~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 241 WVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred EEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 9999887777666642 22334478887654
No 429
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.58 E-value=1.7 Score=43.44 Aligned_cols=144 Identities=10% Similarity=0.100 Sum_probs=80.8
Q ss_pred CCEEEEEEecCCCEEEEEe-----------CCC-cEEEEECCC--Cc--ceEEEccCCCcEEEEEECCCCCcEEEEecCC
Q 011971 292 SEVCGLKWSYDNRELASGG-----------NDN-RLFVWNQHS--TQ--PVLKYCEHTAAVKAIAWSPHLHGLLASGGGT 355 (474)
Q Consensus 292 ~~V~~l~~spd~~~lasg~-----------~Dg-~v~iwd~~~--~~--~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt 355 (474)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+...-.....+++.+++ ++++.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~--- 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT--- 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC---
Confidence 4467889999998877753 223 777776543 22 223443444456889999887 66653
Q ss_pred CCCeEEEEECCCC-----c--ee-eeecC-----CCCeEEEEEcCCCCeEEEEEecC------------------CCeEE
Q 011971 356 ADRCIRFWNTTTN-----T--HL-SCMDT-----GSQVCNLVWSKNVNELVSTHGYS------------------QNQII 404 (474)
Q Consensus 356 ~d~~I~iwd~~~~-----~--~~-~~~~~-----~~~v~~l~~s~~~~~l~~~~g~~------------------dg~I~ 404 (474)
....+++.|.... + .+ ..+.. ......+.|.|+|...++. |.. .+.|.
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~-G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNH-GNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEec-ccCCCceeccCCCccCcccccCceEE
Confidence 3443344455321 1 11 12222 2347789999999766654 421 13444
Q ss_pred EEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCC
Q 011971 405 VWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGD 442 (474)
Q Consensus 405 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~D 442 (474)
-++....+....-.++ .....++|+++|+++++-..+
T Consensus 168 r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 168 RYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EEecCCCeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence 4554433322212233 335689999999887765433
No 430
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.57 E-value=0.61 Score=46.46 Aligned_cols=150 Identities=12% Similarity=0.061 Sum_probs=93.6
Q ss_pred eeeeCCC-CcEEEEEcCCeEEEEeCC--CCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEE----
Q 011971 171 NLVDWSS-HNVLAVGLGNCVYLWNAC--SSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV---- 243 (474)
Q Consensus 171 ~~l~~s~-~~~la~~~d~~V~lwd~~--~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~---- 243 (474)
+.+-|.. ++.|.+-..|.+.=|-.. +..+...+.....++|.+|.|++|.+.||+--.+.+|.+++....+..
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 3344444 444444444444444433 233433444456789999999999999999999999999987433222
Q ss_pred EEecCCCCcEEEEEecC-CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEe--CCCcEEEEEC
Q 011971 244 RTMEGHRLRVGALAWSS-SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG--NDNRLFVWNQ 320 (474)
Q Consensus 244 ~~~~~h~~~V~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~--~Dg~v~iwd~ 320 (474)
.+.+..+..|....|.. .-++.....| +-+|-+......+...+.|.-.|.-..|.++.+.+.-++ ..+++.=+-+
T Consensus 106 ~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~ 184 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHF 184 (657)
T ss_pred HHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEE
Confidence 22234556789999975 3444444443 556665555545666778888999999999887644333 3444433333
Q ss_pred C
Q 011971 321 H 321 (474)
Q Consensus 321 ~ 321 (474)
+
T Consensus 185 ~ 185 (657)
T KOG2377|consen 185 R 185 (657)
T ss_pred e
Confidence 3
No 431
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.11 E-value=4.1 Score=43.34 Aligned_cols=181 Identities=13% Similarity=0.092 Sum_probs=93.8
Q ss_pred CcEEEecCCCCeEEEEecCCCCcEEEEEec-CCEEEEEeCCCcEEEEECcCCcceEeee--cCcCCCEEEEEEecCCCEE
Q 011971 230 GKVQIWDASRCKRVRTMEGHRLRVGALAWS-SSLLSSGSRDKSILQRDIRAQEDFVSKL--SGHKSEVCGLKWSYDNREL 306 (474)
Q Consensus 230 g~I~iwd~~~~~~~~~~~~h~~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~spd~~~l 306 (474)
-.|+||++. |+.+..+.-..+.+-.+.|+ ...|++...+|++.+|++-......... ......|..+.+..+|-.+
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVav 142 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAV 142 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEE
Confidence 458888865 55555544334488899999 4789999999999999986543211111 2223345555555555333
Q ss_pred EEEeCCCcEEEEECCCCcceEEEcc---CCCcEEEEEE-CCCCC-c-EEEEecCCCCC-eEEEEECCCCceeeeec-CCC
Q 011971 307 ASGGNDNRLFVWNQHSTQPVLKYCE---HTAAVKAIAW-SPHLH-G-LLASGGGTADR-CIRFWNTTTNTHLSCMD-TGS 378 (474)
Q Consensus 307 asg~~Dg~v~iwd~~~~~~~~~~~~---h~~~V~~l~~-sp~~~-~-ll~sg~Gt~d~-~I~iwd~~~~~~~~~~~-~~~ 378 (474)
. ..+|.+.+-.-.......++.. ...+-.|-.. .|+.. . ++...- ..+ .+..-+..+.+ ...+. ..+
T Consensus 143 l--t~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~--~v~~~~~q~~~~~~q-~~~~~~~~~ 217 (829)
T KOG2280|consen 143 L--TVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV--AVGLHICQVEESRVQ-LHALSWPNS 217 (829)
T ss_pred E--ecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeech--hhhhcccceeccccc-ccccCCCCc
Confidence 3 3344544433221111222221 1111122221 22111 1 111110 000 11111111122 22222 246
Q ss_pred CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEc
Q 011971 379 QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLT 418 (474)
Q Consensus 379 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~ 418 (474)
.+..+..|++.++|+. -...|.|.+-+....+.+.++.
T Consensus 218 ~~~ki~VS~n~~~laL--yt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLAL--YTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred eEEEEEEcCCcceEEE--EecCCcEEEEecchhhhhhccC
Confidence 7888999999999998 4588999988887777666665
No 432
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.05 E-value=2.4 Score=47.92 Aligned_cols=231 Identities=15% Similarity=0.110 Sum_probs=105.5
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCC-cEEEEEec--CCEEEEEeCCCcEEEEECcCCcc
Q 011971 206 GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRL-RVGALAWS--SSLLSSGSRDKSILQRDIRAQED 282 (474)
Q Consensus 206 ~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~-~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~ 282 (474)
+.......++|+|.-.++|.|+.+|.|++|-...-+.......... .+..+.|- .........+..+.+|......
T Consensus 33 G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~- 111 (993)
T KOG1983|consen 33 GFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKT- 111 (993)
T ss_pred CCCCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccc-
Confidence 4455677889999999999999999999997554333322221111 11111111 1223333344455555443322
Q ss_pred eEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceE-EEccCCCcE-EEEEECCCCCcEEEEecCCCCCeE
Q 011971 283 FVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVL-KYCEHTAAV-KAIAWSPHLHGLLASGGGTADRCI 360 (474)
Q Consensus 283 ~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~-~~~~h~~~V-~~l~~sp~~~~ll~sg~Gt~d~~I 360 (474)
...+...+.+....+--.+ ..| ..+.+++||..-..... .+..-.... .-..+.+. ++..-.-..+-.-
T Consensus 112 ----~~~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~~~~~~~~~~ 182 (993)
T KOG1983|consen 112 ----GVFLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSP---TLSIEGLVIDLDT 182 (993)
T ss_pred ----eeecCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeecc---ceeeecccccccc
Confidence 1123344444443332224 445 78888888865321110 010100000 00001110 0000000001111
Q ss_pred EEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEe
Q 011971 361 RFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGA 440 (474)
Q Consensus 361 ~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s 440 (474)
.+|-+.... .........+.+..+......++ ++..+.+.+|+........ ...+....++.++..++++.
T Consensus 183 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~h 253 (993)
T KOG1983|consen 183 VLISLPDAY-LGLSLIEYESLQVLYYSPTKILI---GFNRGLVVIKDRASKYVQS-----AYLPNGQLESRDGSHFVSYH 253 (993)
T ss_pred ceeeccccc-ccccccccccceeeeecCCCcce---eeeeeeeeehhcccccchh-----hcccccccCccCCceEEEEE
Confidence 111111111 11111233344444333333333 2345566666644332222 22222222388999999999
Q ss_pred CCCcEEEEeCCCCCC
Q 011971 441 GDETLRFWNVFPSPK 455 (474)
Q Consensus 441 ~Dg~I~iW~l~~~~~ 455 (474)
.||.+.+||+..+..
T Consensus 254 ~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 254 TDGSYAFWDVSSGKL 268 (993)
T ss_pred ecCCEEeeecCCCce
Confidence 999999999998765
No 433
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.75 E-value=0.017 Score=57.46 Aligned_cols=231 Identities=15% Similarity=0.215 Sum_probs=136.0
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCCcEEEEEec---CCEEEEEeCCCcEEEEECcCCcceEeeec
Q 011971 212 CSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRLRVGALAWS---SSLLSSGSRDKSILQRDIRAQEDFVSKLS 288 (474)
Q Consensus 212 ~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~~V~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 288 (474)
....|-+.+.-+++++.+-.|..||-.. +..-.. ..++....++|+ +..++.+-..+.+.+||+.+.......+.
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG-QVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc-ceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 3456788777788888888999998543 322222 245566778887 35667778889999999987542111121
Q ss_pred -CcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCC
Q 011971 289 -GHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT 367 (474)
Q Consensus 289 -~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~ 367 (474)
.|.... +.|++.+..++.|...|.+.|++..+.+.+...-.|...+.+++|.+.+. .+ .++ .|..+.+-...
T Consensus 116 g~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vi-l~d--cd~~L~v~~qe- 188 (615)
T KOG2247|consen 116 GTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VI-LCD--CDNTLSVTTQE- 188 (615)
T ss_pred CcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-ee-ecC--cHHHHHHhhhc-
Confidence 222222 77999999999999999999999988877767655999999999999864 33 332 45555443322
Q ss_pred CceeeeecCCCCeEEE--------EEcCCCCeEEEEEecCCCeEEEEECC--CCceeEEEcCCCccEEEEEECCCCCEEE
Q 011971 368 NTHLSCMDTGSQVCNL--------VWSKNVNELVSTHGYSQNQIIVWRYP--TMSKLATLTGHTFRVLYLAISPDGQTIV 437 (474)
Q Consensus 368 ~~~~~~~~~~~~v~~l--------~~s~~~~~l~~~~g~~dg~I~iwd~~--~~~~~~~l~~h~~~V~~l~~spdg~~l~ 437 (474)
++.......++....+ .|..-|..+..+.. ....+..-++. ....-..++...+-+.++.|--||. |.
T Consensus 189 geta~ltevggepdnm~~~y~k~n~w~kage~m~sVvs-gKkhl~yak~nE~D~pval~fq~~~gni~cyrwylDg~-i~ 266 (615)
T KOG2247|consen 189 GETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVS-GKKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDGY-IL 266 (615)
T ss_pred cceeeeeeccCccchhhhheeeeeccccccceeeeeee-cHHHHHHHhhcCCCCccceEeeecCCceeEEEEecccc-cc
Confidence 2222222222222221 24445555544311 11111111111 1111125555567788888888874 44
Q ss_pred EEeCCCcEEEEeCCCC
Q 011971 438 TGAGDETLRFWNVFPS 453 (474)
Q Consensus 438 t~s~Dg~I~iW~l~~~ 453 (474)
-+..-|.|..-...+.
T Consensus 267 igf~ag~iV~iS~h~a 282 (615)
T KOG2247|consen 267 IGFDAGYIVSISAHNA 282 (615)
T ss_pred ccccceeEEEEeccch
Confidence 4544455544444433
No 434
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.73 E-value=8.2 Score=38.54 Aligned_cols=199 Identities=13% Similarity=0.047 Sum_probs=106.5
Q ss_pred CCCcEEEEEcCCeEEEEeCCCCCEEEEEecCC-CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEecCCCC--c
Q 011971 176 SSHNVLAVGLGNCVYLWNACSSKVTKLCDLGI-DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTMEGHRL--R 252 (474)
Q Consensus 176 s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~-~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~~h~~--~ 252 (474)
..+.+++...+|.|+-.|..++..+-...+.. ...+.+-.+..+|+ |++++.+|.+..+|..+++.+........ .
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 34556666677788888888877543222211 12222222233665 78888999999999988998888776551 1
Q ss_pred EEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecC--cCCCEEEEEEecCCCEEEEEeC--CCcEEEEECCCCcceEE
Q 011971 253 VGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSG--HKSEVCGLKWSYDNRELASGGN--DNRLFVWNQHSTQPVLK 328 (474)
Q Consensus 253 V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spd~~~lasg~~--Dg~v~iwd~~~~~~~~~ 328 (474)
..........+..++.++.+...|..++......... -...+++-....++ .+..+.. ++.+.-.|..++.....
T Consensus 146 ~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 146 ASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred ecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeee
Confidence 1111112345555557888888888776632221111 01111111111233 4444544 66788888888877666
Q ss_pred EccC----CCcEEEEEECCCCCcEEEEec---CCCCCeEEEEECCCCceeeeecCC
Q 011971 329 YCEH----TAAVKAIAWSPHLHGLLASGG---GTADRCIRFWNTTTNTHLSCMDTG 377 (474)
Q Consensus 329 ~~~h----~~~V~~l~~sp~~~~ll~sg~---Gt~d~~I~iwd~~~~~~~~~~~~~ 377 (474)
.+.+ ...+....... ...+++.++ +..++.+...|..+++.+..+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~-~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVD-GGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeecccCccccccccccc-CceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 4211 11110010111 111111100 125677888899999988887764
No 435
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.67 E-value=2.7 Score=45.15 Aligned_cols=152 Identities=11% Similarity=0.139 Sum_probs=95.1
Q ss_pred cceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEE----EEec-----------------CCCCCEEEEEEcC--CCCEEE
Q 011971 168 FYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTK----LCDL-----------------GIDDSVCSVGWAN--RNTHLA 224 (474)
Q Consensus 168 ~~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~----~~~~-----------------~~~~~V~~v~~sp--~g~~la 224 (474)
|.-|+.+-+..+++.++..+.|+||+...-.... ...+ .....|..|.... +...|+
T Consensus 39 fKNNLtalsq~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl 118 (717)
T PF08728_consen 39 FKNNLTALSQRNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLL 118 (717)
T ss_pred cccceeEEecCCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEE
Confidence 4455555555888999999999999976432211 0000 0112355554443 446899
Q ss_pred EEeCCCcEEEecCCC-------C----e---------EEEEecCCCCcEEEEEec----CCEEEEEeCCCcEEEEECcCC
Q 011971 225 VGTSHGKVQIWDASR-------C----K---------RVRTMEGHRLRVGALAWS----SSLLSSGSRDKSILQRDIRAQ 280 (474)
Q Consensus 225 ~gs~dg~I~iwd~~~-------~----~---------~~~~~~~h~~~V~~l~~~----~~~l~sgs~dg~I~iwd~~~~ 280 (474)
++..||.|.+|.+++ . + +-..+ .-...++.++++ ..++|+++....|.||-....
T Consensus 119 ~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~ 197 (717)
T PF08728_consen 119 LCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALV 197 (717)
T ss_pred EEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEecc
Confidence 999999999996521 1 0 00111 134578888887 367888888888888755432
Q ss_pred --cceEeeecCcCCCEEEEEEecCC---C---EEEEEeCCCcEEEEEC
Q 011971 281 --EDFVSKLSGHKSEVCGLKWSYDN---R---ELASGGNDNRLFVWNQ 320 (474)
Q Consensus 281 --~~~~~~~~~h~~~V~~l~~spd~---~---~lasg~~Dg~v~iwd~ 320 (474)
......-..|...|-+|+|-++. . .+++++-.|.+.+|++
T Consensus 198 ~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 198 DERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11111122356678888887643 2 7888999999999887
No 436
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=93.64 E-value=6.9 Score=41.68 Aligned_cols=164 Identities=16% Similarity=0.193 Sum_probs=91.3
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCe--EEEEec-CCCC------cEEEEEe--cCCEEEEEeC-CC--
Q 011971 205 LGIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCK--RVRTME-GHRL------RVGALAW--SSSLLSSGSR-DK-- 270 (474)
Q Consensus 205 ~~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~--~~~~~~-~h~~------~V~~l~~--~~~~l~sgs~-dg-- 270 (474)
+.-.+.|..|.|..+++.+++...+|.|++||...+. .+..+. .+.. -|..... ..+++++.+. ++
T Consensus 126 ~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k 205 (670)
T PF10395_consen 126 LKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSK 205 (670)
T ss_pred EEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCc
Confidence 3446889999999999999999999999999993322 111222 1222 1222221 1245555544 32
Q ss_pred -cEEEEECcCCcceEeeec---CcCCCEEEEEEec-CCCEEEEEeCCCcEEEEECCCCcceEEEccC-----C-CcEEEE
Q 011971 271 -SILQRDIRAQEDFVSKLS---GHKSEVCGLKWSY-DNRELASGGNDNRLFVWNQHSTQPVLKYCEH-----T-AAVKAI 339 (474)
Q Consensus 271 -~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~sp-d~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h-----~-~~V~~l 339 (474)
..+++.+......+..+. .+........|.. +|....- .+++|.+|++...+...++.-. . ..+.++
T Consensus 206 ~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl 283 (670)
T PF10395_consen 206 LSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSL 283 (670)
T ss_pred EEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEe
Confidence 356666622222222222 1222222233332 4544333 6789999999887766655321 1 122222
Q ss_pred EECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec
Q 011971 340 AWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMD 375 (474)
Q Consensus 340 ~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~ 375 (474)
. .|..++++.+ .+..|++.|+.-...+.+++
T Consensus 284 ~-~~s~nRvLLs----~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 284 K-PPSPNRVLLS----VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred e-cCCCCeEEEE----cCCEEEEEeehhhhhhhhhh
Confidence 2 2233456665 47899999998777666665
No 437
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.59 E-value=7 Score=37.36 Aligned_cols=216 Identities=11% Similarity=0.104 Sum_probs=125.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEecCC-------CCeEEEEecC-----CCCcEEEEEecC--------------CEE
Q 011971 210 SVCSVGWANRNTHLAVGTSHGKVQIWDAS-------RCKRVRTMEG-----HRLRVGALAWSS--------------SLL 263 (474)
Q Consensus 210 ~V~~v~~sp~g~~la~gs~dg~I~iwd~~-------~~~~~~~~~~-----h~~~V~~l~~~~--------------~~l 263 (474)
.-+.|+++|.+.+-++....+...+||.. ...++-++.. .....+.+.|++ ..+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45689999999877777778899999986 2223334432 234577777762 247
Q ss_pred EEEeCCCcEEEEECcCCcc----eEeeec-CcCCCE-EEEEEecC--CCEEEEE-eCCCcEEEEECCCCcce--EEEccC
Q 011971 264 SSGSRDKSILQRDIRAQED----FVSKLS-GHKSEV-CGLKWSYD--NRELASG-GNDNRLFVWNQHSTQPV--LKYCEH 332 (474)
Q Consensus 264 ~sgs~dg~I~iwd~~~~~~----~~~~~~-~h~~~V-~~l~~spd--~~~lasg-~~Dg~v~iwd~~~~~~~--~~~~~h 332 (474)
+.+++||+|.-|....... ....+. .....| .++++-.. +.+|..+ -..++|-|||-.-.+.. ..|...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 8889999999998543321 112221 112333 45555432 4444443 45788888885422211 011110
Q ss_pred CCcEEEEEECCC-----CCcEEEEec-----------CCCCCeEEEEECCCCceeeeecCCCC---eEEEEEcC------
Q 011971 333 TAAVKAIAWSPH-----LHGLLASGG-----------GTADRCIRFWNTTTNTHLSCMDTGSQ---VCNLVWSK------ 387 (474)
Q Consensus 333 ~~~V~~l~~sp~-----~~~ll~sg~-----------Gt~d~~I~iwd~~~~~~~~~~~~~~~---v~~l~~s~------ 387 (474)
. + -.-|.|. +..|+++-. |.--|.|-+||+. |..++.+..+.. .+.|+..|
T Consensus 184 ~--i-PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 184 A--L-PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred C--C-CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 0 0 0011111 112333211 1124789999964 677777765543 55677655
Q ss_pred CCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCc------cEEEEEECC
Q 011971 388 NVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTF------RVLYLAISP 431 (474)
Q Consensus 388 ~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~------~V~~l~~sp 431 (474)
.+..|+- ...||+|..||..+++.+..+....+ .++.|+|..
T Consensus 260 sg~lLVG--NFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 260 SGALLVG--NFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCeEEe--ecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 3555665 66799999999999998888875433 356777765
No 438
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.24 E-value=7.8 Score=36.80 Aligned_cols=192 Identities=10% Similarity=0.069 Sum_probs=116.6
Q ss_pred CCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEeeecCcC-CCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcc--
Q 011971 249 HRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHK-SEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQP-- 325 (474)
Q Consensus 249 h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~-- 325 (474)
-..-+..+.+++++...+..+.-++|.|+.++..+...-.-.. +--.++. -.|++..++..|.-+.+.|+.+.+.
T Consensus 85 ~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~--vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 85 ARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE--ecCCEEEEeeccCcEEEEECCCCCCce
Confidence 3455677888899999999999999999998875543322222 3334444 4588888888777888999876532
Q ss_pred -eEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc---eeeeecCCCCeEEEEEcCCCCeEEEEEecCCC
Q 011971 326 -VLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT---HLSCMDTGSQVCNLVWSKNVNELVSTHGYSQN 401 (474)
Q Consensus 326 -~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~---~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg 401 (474)
..........-..++.+-+ +-+.+. .|+-+.+.|+.+.. .+.....+..+..+..+++..+++. -+.
T Consensus 163 lagrya~~~~d~~~v~ISGn--~AYvA~---~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vv----y~e 233 (370)
T COG5276 163 LAGRYALPGGDTHDVAISGN--YAYVAW---RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVV----YDE 233 (370)
T ss_pred eeeeeccCCCCceeEEEecC--eEEEEE---eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEE----ccc
Confidence 2333334444456666643 334433 58889999987643 4555666768888888888777776 233
Q ss_pred eEEEEECCCCceeEEEc--CCCc--cEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 011971 402 QIIVWRYPTMSKLATLT--GHTF--RVLYLAISPDGQTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 402 ~I~iwd~~~~~~~~~l~--~h~~--~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~~ 453 (474)
-+.+-|....+....+. .... .+..+.. .|++...+..+.-+-+-|+.+.
T Consensus 234 gvlivd~s~~ssp~~~gsyet~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 234 GVLIVDVSGPSSPTVFGSYETSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred ceEEEecCCCCCceEeeccccCCcccccceec--ccceeeeeccccCceeEeccCC
Confidence 45555655444222221 1111 1222233 3445555555555555555543
No 439
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=93.09 E-value=9 Score=37.12 Aligned_cols=227 Identities=15% Similarity=0.027 Sum_probs=121.5
Q ss_pred cEEEEEcCCeEEEEeCCC--CCEEEEEecCCCCCEEEEEEcCCCCEEEEEeC-CCcEEEecCCCCeE-------------
Q 011971 179 NVLAVGLGNCVYLWNACS--SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTS-HGKVQIWDASRCKR------------- 242 (474)
Q Consensus 179 ~~la~~~d~~V~lwd~~~--~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~-dg~I~iwd~~~~~~------------- 242 (474)
..|..|.+..+++-+... ++..+++ +...|+++...+.-+.|++-+. ...++++++..-..
T Consensus 14 ~~lL~GTe~Gly~~~~~~~~~~~~kl~---~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 14 KWLLVGTEEGLYVLNISDQPGTLEKLI---GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred cEEEEEeCCceEEEEcccCCCCeEEec---CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 578899988899988765 3455554 4679999999988776665543 34499998732221
Q ss_pred --EEEecCCCCcEEEEEec-C--CEEEEEeCCCcEEEEECcCCcceEeeec-------CcCCCEEEEEEecC--CCEEEE
Q 011971 243 --VRTMEGHRLRVGALAWS-S--SLLSSGSRDKSILQRDIRAQEDFVSKLS-------GHKSEVCGLKWSYD--NRELAS 308 (474)
Q Consensus 243 --~~~~~~h~~~V~~l~~~-~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------~h~~~V~~l~~spd--~~~las 308 (474)
....-.|......+... + ..++++....+|.++...........+. .-..++..+..+++ ...+..
T Consensus 91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv 170 (302)
T smart00036 91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI 170 (302)
T ss_pred ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence 01122344433333332 2 2445555566777764433211111111 11123333333332 457777
Q ss_pred EeCCCcEEEEECCC--Ccce---EE--EccCC-CcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce--eeeecCCC
Q 011971 309 GGNDNRLFVWNQHS--TQPV---LK--YCEHT-AAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH--LSCMDTGS 378 (474)
Q Consensus 309 g~~Dg~v~iwd~~~--~~~~---~~--~~~h~-~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~--~~~~~~~~ 378 (474)
|+..+-..++++.. .... .. ..... .++..+... ++. ++.+ .|....+.|...... ...+.-..
T Consensus 171 G~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~-~~e-~Llc----~~~~~v~Vn~~G~~~~r~~~l~w~~ 244 (302)
T smart00036 171 GSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVP-RDE-FLLC----YDEFGVFVNLYGKRRSRNPILHWEF 244 (302)
T ss_pred EEcCCCCeEEEEeecccccccccccccccccccCceEEEEEC-CCe-EEEE----ECcEEEEEeCCCCccccceEEEcCC
Confidence 77653344444432 1100 00 00111 344444443 344 4444 467777777764122 22344455
Q ss_pred CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcC
Q 011971 379 QVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTG 419 (474)
Q Consensus 379 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~ 419 (474)
...++++. ..++++. .++.|.|+++.+++.++++..
T Consensus 245 ~p~~~~~~--~pyll~~---~~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 245 MPESFAYH--SPYLLAF---HDNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred cccEEEEE--CCEEEEE---cCCcEEEEECCCCceEEEEec
Confidence 56677776 3566653 467799999999998888863
No 440
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.02 E-value=1.7 Score=46.08 Aligned_cols=100 Identities=15% Similarity=0.281 Sum_probs=67.8
Q ss_pred CcEEEEEcC-CeEEEEeCCCCCEEEEEecCCCCCEEEEEEc--CCCCEEEEEeCCCcEEEecCC---------CCeEEEE
Q 011971 178 HNVLAVGLG-NCVYLWNACSSKVTKLCDLGIDDSVCSVGWA--NRNTHLAVGTSHGKVQIWDAS---------RCKRVRT 245 (474)
Q Consensus 178 ~~~la~~~d-~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~s--p~g~~la~gs~dg~I~iwd~~---------~~~~~~~ 245 (474)
+.+..+..+ ..+.|||...+.......+...+.|.++.|. |+|+.+++.+....|.+|--. +-..++.
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~ 120 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRK 120 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEE
Confidence 555555544 5899999998886665555668899999997 578777777778889888531 1122333
Q ss_pred e--cCCC-CcEEEEEecC-CEEEEEeCCCcEEEEECc
Q 011971 246 M--EGHR-LRVGALAWSS-SLLSSGSRDKSILQRDIR 278 (474)
Q Consensus 246 ~--~~h~-~~V~~l~~~~-~~l~sgs~dg~I~iwd~~ 278 (474)
+ ..|+ .+|.+..|.+ ..|++|+ +..+.|+|-.
T Consensus 121 i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 121 IDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKW 156 (631)
T ss_pred EEeecCCCCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence 2 3444 6799999985 4555544 4577887643
No 441
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.74 E-value=2.6 Score=44.69 Aligned_cols=89 Identities=12% Similarity=0.135 Sum_probs=55.4
Q ss_pred EECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEEEEECCCCCEEEEEeCC
Q 011971 363 WNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGD 442 (474)
Q Consensus 363 wd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~t~s~D 442 (474)
.|+-.|.....+.|.+.|.=+..+..+..|+. -...-.+.++|+.+.+....+ .-.+.+.|-|-...|+.-+.|
T Consensus 323 vdli~g~~~~~inh~~~vdwielne~~~kllf--rdkk~kl~l~di~s~qksmil----nfcsymqwvp~sdvivaqn~d 396 (1636)
T KOG3616|consen 323 VDLIGGQNEGFINHEGAVDWIELNERAHKLLF--RDKKLKLHLVDIESCQKSMIL----NFCSYMQWVPGSDVIVAQNGD 396 (1636)
T ss_pred eecccCcccccccccccccceeccchhhhhhc--ccccceeEEEEcccchHHHHH----HHhhhheeccCcceEEecCCC
Confidence 34445555666666777766777777777766 445567778888765432211 124568899988888887777
Q ss_pred CcEEEEeCCCCCCCC
Q 011971 443 ETLRFWNVFPSPKSQ 457 (474)
Q Consensus 443 g~I~iW~l~~~~~~~ 457 (474)
.....|+++......
T Consensus 397 nl~iwyn~d~peqvt 411 (1636)
T KOG3616|consen 397 NLCIWYNIDAPEQVT 411 (1636)
T ss_pred ceEEEecCCcchhhe
Confidence 544444665544433
No 442
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.56 E-value=4.3 Score=44.15 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=21.9
Q ss_pred CCccEEEEEECCC---CCEEEEEeCCCcEEEEeCCC
Q 011971 420 HTFRVLYLAISPD---GQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 420 h~~~V~~l~~spd---g~~l~t~s~Dg~I~iW~l~~ 452 (474)
+...|..+.|+|. +.+|+.-..|++||+||+..
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 3445667777764 45677777777777777764
No 443
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.49 E-value=0.52 Score=41.59 Aligned_cols=70 Identities=26% Similarity=0.423 Sum_probs=48.3
Q ss_pred ceeeeeCCCCcEEEEEcCCeEEEEeCCCCC-----------------------EE--EEE------e---cC------CC
Q 011971 169 YLNLVDWSSHNVLAVGLGNCVYLWNACSSK-----------------------VT--KLC------D---LG------ID 208 (474)
Q Consensus 169 ~v~~l~~s~~~~la~~~d~~V~lwd~~~~~-----------------------~~--~~~------~---~~------~~ 208 (474)
+.++++||.++.||+..+..|+|.+..+-. .. ..+ . .. ..
T Consensus 6 ~~~~l~WS~Dg~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~ 85 (173)
T PF12657_consen 6 CPNALAWSEDGQLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISS 85 (173)
T ss_pred CCcCeeECCCCCEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceecccccccccccc
Confidence 468999999999999999999999332211 00 000 0 00 01
Q ss_pred CCEEEEEEcCCC------CEEEEEeCCCcEEEecCC
Q 011971 209 DSVCSVGWANRN------THLAVGTSHGKVQIWDAS 238 (474)
Q Consensus 209 ~~V~~v~~sp~g------~~la~gs~dg~I~iwd~~ 238 (474)
..|.+++|||.| .+||+.+.+|.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 278889999854 478888899999999755
No 444
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=92.44 E-value=21 Score=39.61 Aligned_cols=111 Identities=15% Similarity=0.199 Sum_probs=75.2
Q ss_pred CCEEEEEEec-CCCEEEEEeCCCcEEEEECCCC----cceEEEc-cC----------CCcEEEEEECCCCCcEEEEecCC
Q 011971 292 SEVCGLKWSY-DNRELASGGNDNRLFVWNQHST----QPVLKYC-EH----------TAAVKAIAWSPHLHGLLASGGGT 355 (474)
Q Consensus 292 ~~V~~l~~sp-d~~~lasg~~Dg~v~iwd~~~~----~~~~~~~-~h----------~~~V~~l~~sp~~~~ll~sg~Gt 355 (474)
.+...++|+| +.+.||+....|...|||+... .....+. .+ ...-..+.|.++.+.||++
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~---- 221 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC---- 221 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEE----
Confidence 4567899998 5679999999999999999211 1111111 11 1234588998888878876
Q ss_pred CCCeEEEEECCCCceee---eecCCCCeEEEEEcCC--CCeEEEEEecCCCeEEEEECCC
Q 011971 356 ADRCIRFWNTTTNTHLS---CMDTGSQVCNLVWSKN--VNELVSTHGYSQNQIIVWRYPT 410 (474)
Q Consensus 356 ~d~~I~iwd~~~~~~~~---~~~~~~~v~~l~~s~~--~~~l~~~~g~~dg~I~iwd~~~ 410 (474)
....+.++|+.+..... .-.....|..+.-++. +..++. ....|...++..
T Consensus 222 ~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL----Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 222 NRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL----TSKEIIWLDVKS 277 (765)
T ss_pred cCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE----ecCeEEEEEccC
Confidence 47889999999876633 3334567888888887 333333 246788888765
No 445
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=92.40 E-value=13 Score=37.42 Aligned_cols=266 Identities=8% Similarity=0.030 Sum_probs=129.9
Q ss_pred ceeeeeC---CCCcEEEEEcCCeEEEEeCCCCCEEEEEe-c----CCCCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCC
Q 011971 169 YLNLVDW---SSHNVLAVGLGNCVYLWNACSSKVTKLCD-L----GIDDSVCSVGWANRNTHLAVGTSHGKVQIWDASRC 240 (474)
Q Consensus 169 ~v~~l~~---s~~~~la~~~d~~V~lwd~~~~~~~~~~~-~----~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~ 240 (474)
.+..|.| ++.+-+++|..+.|.-=+-.......... . .......+|.|. +++.+++ +..|.|.. ....+
T Consensus 89 ~L~~V~F~~~d~~~GwAVG~~G~IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~-~~~g~~v-G~~G~il~-T~DgG 165 (398)
T PLN00033 89 VLLDIAFVPDDPTHGFLLGTRQTLLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFK-GKEGWII-GKPAILLH-TSDGG 165 (398)
T ss_pred ceEEEEeccCCCCEEEEEcCCCEEEEEcCCCCCceECccCcccccccccceeeeEEE-CCEEEEE-cCceEEEE-EcCCC
Confidence 4677777 45788888888765543222222222110 0 111245777776 3444444 45553322 22333
Q ss_pred eEEEEecC---CCCcEEEEE-ecCCEEEEEeCCCcEEEEECcCCcceEee--------e-----------cCcCCCEEEE
Q 011971 241 KRVRTMEG---HRLRVGALA-WSSSLLSSGSRDKSILQRDIRAQEDFVSK--------L-----------SGHKSEVCGL 297 (474)
Q Consensus 241 ~~~~~~~~---h~~~V~~l~-~~~~~l~sgs~dg~I~iwd~~~~~~~~~~--------~-----------~~h~~~V~~l 297 (474)
+.-..+.. .......+. ..++.....+..|.|..-+ +.++..... + ....+....+
T Consensus 166 ~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~G~v~~S~-D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v 244 (398)
T PLN00033 166 ETWERIPLSPKLPGEPVLIKATGPKSAEMVTDEGAIYVTS-NAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTV 244 (398)
T ss_pred CCceECccccCCCCCceEEEEECCCceEEEeccceEEEEC-CCCCCceEcccccccccccccccccccccceeccceeeE
Confidence 32222211 111112222 2333333444666665443 112111111 0 0011223445
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-----eee
Q 011971 298 KWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNT-----HLS 372 (474)
Q Consensus 298 ~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~-----~~~ 372 (474)
..++++.+++.|.....++-||--...-...-......+.++.|.+++..++ ++ .+|.+ ++....++ ...
T Consensus 245 ~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l-~g---~~G~l-~~S~d~G~~~~~~~f~ 319 (398)
T PLN00033 245 NRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWL-LT---RGGGL-YVSKGTGLTEEDFDFE 319 (398)
T ss_pred EEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEE-Ee---CCceE-EEecCCCCccccccee
Confidence 5677877777766544334454321110111123456789999999887444 44 45654 34444443 233
Q ss_pred eecC---CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEE---cCCCccEEEEEECCCCCEEEEEeCCCcEE
Q 011971 373 CMDT---GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATL---TGHTFRVLYLAISPDGQTIVTGAGDETLR 446 (474)
Q Consensus 373 ~~~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l---~~h~~~V~~l~~spdg~~l~t~s~Dg~I~ 446 (474)
.... ...+..+.|.+++..+++ | ..|.+.... ..++.-... ..-......+.|.++++.+++ +.+|.|.
T Consensus 320 ~~~~~~~~~~l~~v~~~~d~~~~a~--G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il 394 (398)
T PLN00033 320 EADIKSRGFGILDVGYRSKKEAWAA--G-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLL 394 (398)
T ss_pred ecccCCCCcceEEEEEcCCCcEEEE--E-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEE
Confidence 3332 235888999988887776 5 566665543 333322222 223456778998877665554 4778776
Q ss_pred EE
Q 011971 447 FW 448 (474)
Q Consensus 447 iW 448 (474)
-|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Confidence 55
No 446
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.15 E-value=11 Score=35.99 Aligned_cols=198 Identities=16% Similarity=0.146 Sum_probs=114.7
Q ss_pred cEEEEEecC--CEEEEEeCCCcEEEEECc------CCcceEeeecC-----cCCCEEEEEEecCCC------------EE
Q 011971 252 RVGALAWSS--SLLSSGSRDKSILQRDIR------AQEDFVSKLSG-----HKSEVCGLKWSYDNR------------EL 306 (474)
Q Consensus 252 ~V~~l~~~~--~~l~sgs~dg~I~iwd~~------~~~~~~~~~~~-----h~~~V~~l~~spd~~------------~l 306 (474)
.-+.|++++ ..-++....+...+||.. ....++..+.. .....+++.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 346677775 566666777889999986 22223333321 234678888875332 36
Q ss_pred EEEeCCCcEEEEECCCCc-----ceEEEccC--CCcEEEEEECC--CCCcEEEEecCCCCCeEEEEECCCCceeee--e-
Q 011971 307 ASGGNDNRLFVWNQHSTQ-----PVLKYCEH--TAAVKAIAWSP--HLHGLLASGGGTADRCIRFWNTTTNTHLSC--M- 374 (474)
Q Consensus 307 asg~~Dg~v~iwd~~~~~-----~~~~~~~h--~~~V~~l~~sp--~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~--~- 374 (474)
+.+++||+|.-|...-.. ....+... ...-+.+++.. .+..|+++-- ..++|.+||-.-.+.... +
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF--~~g~IDVFd~~f~~~~~~g~F~ 181 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF--RQGRIDVFKGSFRPPPLPGSFI 181 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc--CCCceEEecCccccccCCCCcc
Confidence 778899999999853221 12223221 22335566654 3566777765 689999998653322110 0
Q ss_pred ----cCCC---CeEEE---------EEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEc--CCCccEEEEEECC-----
Q 011971 375 ----DTGS---QVCNL---------VWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLT--GHTFRVLYLAISP----- 431 (474)
Q Consensus 375 ----~~~~---~v~~l---------~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~sp----- 431 (474)
..+- .|..+ .-.++...-+. |-.-|.|-+||. .+..++.+. +.-..-+.|+..|
T Consensus 182 DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~--G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 182 DPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVA--GAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred CCCCCCCCCCcceEEECCeEEEEEEecCCccccccc--CCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCC
Confidence 1111 11111 11222222222 445578999996 566666663 2333456677755
Q ss_pred -CCCEEEEEeCCCcEEEEeCCCCC
Q 011971 432 -DGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 432 -dg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
.|.+|+---.||+|..+|..++.
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCc
Confidence 46778777789999999988665
No 447
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=91.93 E-value=15 Score=36.83 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=26.4
Q ss_pred EEecCCEEEEEeCC-----------CcEEEEECcCCcceEeeecCc-CCCE--EEEEEecCCCEEEEEeCC
Q 011971 256 LAWSSSLLSSGSRD-----------KSILQRDIRAQEDFVSKLSGH-KSEV--CGLKWSYDNRELASGGND 312 (474)
Q Consensus 256 l~~~~~~l~sgs~d-----------g~I~iwd~~~~~~~~~~~~~h-~~~V--~~l~~spd~~~lasg~~D 312 (474)
+...+.+.+.|+.+ ..+..||..+.. ...+... .... .+....-+++.++.|+.+
T Consensus 81 v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~--W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 81 AFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS--WQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred EEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE--EEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 34445666666643 246778876643 2221111 1111 111221467788888754
No 448
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.36 E-value=1.6 Score=40.07 Aligned_cols=72 Identities=8% Similarity=0.122 Sum_probs=44.3
Q ss_pred cEEEEEecCCEEEEEeCCCcEEEEECcCCcceEee------ec-------CcCCCEEEEEEecCCCEEEEEeCCCcEEEE
Q 011971 252 RVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVSK------LS-------GHKSEVCGLKWSYDNRELASGGNDNRLFVW 318 (474)
Q Consensus 252 ~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~------~~-------~h~~~V~~l~~spd~~~lasg~~Dg~v~iw 318 (474)
.+..+..++++|++-+.+|.+++||+.+.+..... +. .....|..+.++.+|.-+++-++ |..+.|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y 92 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSY 92 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEe
Confidence 34445555666677777777777776655422111 11 34566788888888877766554 778888
Q ss_pred ECCCCc
Q 011971 319 NQHSTQ 324 (474)
Q Consensus 319 d~~~~~ 324 (474)
+..-+.
T Consensus 93 ~~~L~~ 98 (219)
T PF07569_consen 93 SPDLGC 98 (219)
T ss_pred ccccce
Confidence 865443
No 449
>PHA02790 Kelch-like protein; Provisional
Probab=91.35 E-value=9.9 Score=39.52 Aligned_cols=182 Identities=9% Similarity=0.049 Sum_probs=82.3
Q ss_pred CCEEEEEeCCC-----cEEEEECcCCcc-eEeeecCcCCCEEEEEEecCCCEEEEEeCC--CcEEEEECCCCcceE--EE
Q 011971 260 SSLLSSGSRDK-----SILQRDIRAQED-FVSKLSGHKSEVCGLKWSYDNRELASGGND--NRLFVWNQHSTQPVL--KY 329 (474)
Q Consensus 260 ~~~l~sgs~dg-----~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spd~~~lasg~~D--g~v~iwd~~~~~~~~--~~ 329 (474)
+.+++.|+.++ .+..||..+..- .+..+.........+ .-++...+.||.+ ..+..||..+.+-.. .+
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 45556666543 466777766431 011111111112222 2467788888864 357888876543221 11
Q ss_pred ccCCCcEEEEEECCCCCcEEEEecCC-CCCeEEEEECCCCceeeeecCCCCeEE-EEEcCCCCeEEEEEecCCCeEEEEE
Q 011971 330 CEHTAAVKAIAWSPHLHGLLASGGGT-ADRCIRFWNTTTNTHLSCMDTGSQVCN-LVWSKNVNELVSTHGYSQNQIIVWR 407 (474)
Q Consensus 330 ~~h~~~V~~l~~sp~~~~ll~sg~Gt-~d~~I~iwd~~~~~~~~~~~~~~~v~~-l~~s~~~~~l~~~~g~~dg~I~iwd 407 (474)
.........++. +..+++.||.. ....+..||..+.+-...-....+... .+..-++ .|++. | |.+.+||
T Consensus 350 ~~~r~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~-~IYv~-G---G~~e~yd 421 (480)
T PHA02790 350 LKPRCNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGR-RLFLV-G---RNAEFYC 421 (480)
T ss_pred CCCCcccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECC-EEEEE-C---CceEEec
Confidence 111111122222 34578877621 123467888776532221111111111 1112233 44443 4 3467788
Q ss_pred CCCCc--eeEEEcCCCccEEEEEECCCCCEEEEEeCC-----CcEEEEeCCCC
Q 011971 408 YPTMS--KLATLTGHTFRVLYLAISPDGQTIVTGAGD-----ETLRFWNVFPS 453 (474)
Q Consensus 408 ~~~~~--~~~~l~~h~~~V~~l~~spdg~~l~t~s~D-----g~I~iW~l~~~ 453 (474)
..+.+ .+..+.........+.+ +|+..+.||.+ .++..||....
T Consensus 422 p~~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 422 ESSNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence 76543 23322221222222333 67777777754 24666666544
No 450
>PLN02153 epithiospecifier protein
Probab=91.28 E-value=16 Score=35.96 Aligned_cols=132 Identities=11% Similarity=0.090 Sum_probs=67.2
Q ss_pred eEEEEeCCCCCEEEEEecCCC-C----CEEEEEEcCCCCEEEEEeCC-----CcEEEecCCCCeEEE--EecC---CCCc
Q 011971 188 CVYLWNACSSKVTKLCDLGID-D----SVCSVGWANRNTHLAVGTSH-----GKVQIWDASRCKRVR--TMEG---HRLR 252 (474)
Q Consensus 188 ~V~lwd~~~~~~~~~~~~~~~-~----~V~~v~~sp~g~~la~gs~d-----g~I~iwd~~~~~~~~--~~~~---h~~~ 252 (474)
.+++||..+.+.......+.. . ....+.+ ++++++.|+.+ ..+.+||..+.+-.. .+.. ...+
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R 128 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR 128 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence 688999988876654322211 1 1222222 46667777653 257889988765332 1210 1111
Q ss_pred -EEE-EEecCCEEEEEeCC-----------CcEEEEECcCCcceEeeecCc------CCCEEEEEEecCCCEEEEEeCC-
Q 011971 253 -VGA-LAWSSSLLSSGSRD-----------KSILQRDIRAQEDFVSKLSGH------KSEVCGLKWSYDNRELASGGND- 312 (474)
Q Consensus 253 -V~~-l~~~~~~l~sgs~d-----------g~I~iwd~~~~~~~~~~~~~h------~~~V~~l~~spd~~~lasg~~D- 312 (474)
-.+ ....+.+++.|+.+ ..|.+||..+.. ...+... .... +++. -+++.++.|+.+
T Consensus 129 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~--W~~l~~~~~~~~~r~~~-~~~~-~~~~iyv~GG~~~ 204 (341)
T PLN02153 129 TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK--WVQLPDPGENFEKRGGA-GFAV-VQGKIWVVYGFAT 204 (341)
T ss_pred eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCe--EeeCCCCCCCCCCCCcc-eEEE-ECCeEEEEecccc
Confidence 112 22335666777754 247788887654 2222111 1111 1221 356666666532
Q ss_pred ------------CcEEEEECCCCcc
Q 011971 313 ------------NRLFVWNQHSTQP 325 (474)
Q Consensus 313 ------------g~v~iwd~~~~~~ 325 (474)
+.|.+||..+.+-
T Consensus 205 ~~~~gG~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 205 SILPGGKSDYESNAVQFFDPASGKW 229 (341)
T ss_pred ccccCCccceecCceEEEEcCCCcE
Confidence 4688899876643
No 451
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.14 E-value=12 Score=34.08 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=69.4
Q ss_pred EEEEecC-CEEEEEeCCCcEEEEECcCCc-ceEeeecCcCCCEEEEEEecCCCEEEEEeCCC------cEEEE---ECC-
Q 011971 254 GALAWSS-SLLSSGSRDKSILQRDIRAQE-DFVSKLSGHKSEVCGLKWSYDNRELASGGNDN------RLFVW---NQH- 321 (474)
Q Consensus 254 ~~l~~~~-~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg------~v~iw---d~~- 321 (474)
..++-.+ +.|+.+...+.|.+|++.... .....+. .-+.|..+.++..|++|++-=.++ .+++| ...
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 3344445 777777888899999998443 2344443 347899999999999999853322 45554 221
Q ss_pred -CCcceE-EEcc---------------------CCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011971 322 -STQPVL-KYCE---------------------HTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTN 368 (474)
Q Consensus 322 -~~~~~~-~~~~---------------------h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~ 368 (474)
..+++. .+-+ -..++.+++-+|-...|++. .++.+.+|.+...
T Consensus 100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg----~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG----CGNKLVLFTLKYQ 165 (215)
T ss_pred ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE----cCCEEEEEEEEEE
Confidence 111111 1111 23467788889877667775 3788999987643
No 452
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=90.99 E-value=17 Score=35.78 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=28.0
Q ss_pred EEEecCCEEEEEeCC-----------CcEEEEECcCCcceEeeec-CcCCCEEEE-EE-ecCCCEEEEEeCC
Q 011971 255 ALAWSSSLLSSGSRD-----------KSILQRDIRAQEDFVSKLS-GHKSEVCGL-KW-SYDNRELASGGND 312 (474)
Q Consensus 255 ~l~~~~~~l~sgs~d-----------g~I~iwd~~~~~~~~~~~~-~h~~~V~~l-~~-spd~~~lasg~~D 312 (474)
.+...+.+.+.|+.+ ..+..||..+.. ...+. .......+. .. .-+++..+.|+.+
T Consensus 59 ~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~--W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 59 AAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS--WQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred EEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCE--EecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 344456677777653 246778877644 11111 111111111 11 2467788888764
No 453
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=90.93 E-value=3.5 Score=41.64 Aligned_cols=87 Identities=14% Similarity=0.074 Sum_probs=59.2
Q ss_pred ecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEE-EEEC-CC----------------CCcE
Q 011971 287 LSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKA-IAWS-PH----------------LHGL 348 (474)
Q Consensus 287 ~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~-l~~s-p~----------------~~~l 348 (474)
+......+.+|..+|++++.|+..+=|.|.++|+.++..++.+++...+-.. +... .. .-.|
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 3344556889999999999999888899999999999888777765443111 1111 10 0123
Q ss_pred EEEecCCCCCeEEEEECCCCceeeeec
Q 011971 349 LASGGGTADRCIRFWNTTTNTHLSCMD 375 (474)
Q Consensus 349 l~sg~Gt~d~~I~iwd~~~~~~~~~~~ 375 (474)
++-.. .-|.|.+|.+++|..+..+.
T Consensus 383 vIyap--rRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 383 VIYAP--RRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEec--cCCeEEEEecCCCCEEEEEE
Confidence 33332 67889999999888776654
No 454
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.72 E-value=8.8 Score=32.01 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=68.2
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEecCCCCe--------EEEEecCCCCcEEEEEe---c----CCEEEEEeCCCcEEEEEC
Q 011971 213 SVGWANRNTHLAVGTSHGKVQIWDASRCK--------RVRTMEGHRLRVGALAW---S----SSLLSSGSRDKSILQRDI 277 (474)
Q Consensus 213 ~v~~sp~g~~la~gs~dg~I~iwd~~~~~--------~~~~~~~h~~~V~~l~~---~----~~~l~sgs~dg~I~iwd~ 277 (474)
.-.|......|++++.-|.|.|++..... .++.+. -...|++|+- . .+.|+.|+.. .+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEc
Confidence 34566666688999999999999876332 233333 3445666654 2 2567776654 7899999
Q ss_pred cCCcceEeeecCcCCCEEEEEEec----CCCEEEEEeCCCcEEEEECCCCcceEEE
Q 011971 278 RAQEDFVSKLSGHKSEVCGLKWSY----DNRELASGGNDNRLFVWNQHSTQPVLKY 329 (474)
Q Consensus 278 ~~~~~~~~~~~~h~~~V~~l~~sp----d~~~lasg~~Dg~v~iwd~~~~~~~~~~ 329 (474)
...... .++.-...|.++.+-. +..++++|+ +..|.-||....+...+.
T Consensus 81 ~~N~d~--Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDL--FYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchh--hhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEEe
Confidence 876632 2333446677776632 233444444 467777777655544443
No 455
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.70 E-value=1.2 Score=28.56 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=32.8
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEc
Q 011971 343 PHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWS 386 (474)
Q Consensus 343 p~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s 386 (474)
|+++.++++.. .++.|.++|..+++.+..+..+.....++|+
T Consensus 1 pd~~~lyv~~~--~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNS--GSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeC--CCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 56777888765 5889999999999988888876666666553
No 456
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.48 E-value=18 Score=35.23 Aligned_cols=110 Identities=12% Similarity=0.206 Sum_probs=52.4
Q ss_pred EEEecCCEEEEEeCCC-----cEEEEECcCCcc--eEeeecCcCCCE--EEEEEecCCCEEEEEeC-----CCcEEEEEC
Q 011971 255 ALAWSSSLLSSGSRDK-----SILQRDIRAQED--FVSKLSGHKSEV--CGLKWSYDNRELASGGN-----DNRLFVWNQ 320 (474)
Q Consensus 255 ~l~~~~~~l~sgs~dg-----~I~iwd~~~~~~--~~~~~~~h~~~V--~~l~~spd~~~lasg~~-----Dg~v~iwd~ 320 (474)
.+...+.+++.|+.++ .+..+|+.+... ....+..-.... .+++. -++..++.|+. .+.+..||+
T Consensus 68 ~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~ 146 (323)
T TIGR03548 68 SVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNL 146 (323)
T ss_pred EEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcC
Confidence 3445566777777643 466677765441 011111111111 11222 25667777774 246888898
Q ss_pred CCCcceE--EEccCCCcEEEEEECCCCCcEEEEecCCCCC----eEEEEECCCCc
Q 011971 321 HSTQPVL--KYCEHTAAVKAIAWSPHLHGLLASGGGTADR----CIRFWNTTTNT 369 (474)
Q Consensus 321 ~~~~~~~--~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~----~I~iwd~~~~~ 369 (474)
.+.+-.. .+.. .......+..- +..|++.|| .++ .+..||..+.+
T Consensus 147 ~~~~W~~~~~~p~-~~r~~~~~~~~-~~~iYv~GG--~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 147 ETQEWFELPDFPG-EPRVQPVCVKL-QNELYVFGG--GSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCCCeeECCCCCC-CCCCcceEEEE-CCEEEEEcC--CCCccccceEEEecCCCe
Confidence 7654321 1111 11111111112 345777775 332 35678887654
No 457
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.39 E-value=4 Score=46.08 Aligned_cols=139 Identities=17% Similarity=0.237 Sum_probs=88.5
Q ss_pred eCCCcEEEEECCCCcceEEEccCCCcEEEEEE--------CCCCCcEEEEecCCCCCeEEEEECC----CCcee-----e
Q 011971 310 GNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAW--------SPHLHGLLASGGGTADRCIRFWNTT----TNTHL-----S 372 (474)
Q Consensus 310 ~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~--------sp~~~~ll~sg~Gt~d~~I~iwd~~----~~~~~-----~ 372 (474)
+.|+.+.+|+..++.....+.+-...|..|.. -|.=.++|+.+ .--.|.++-+. ++..- .
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva---T~~ei~ilgV~~~~~~~~~~~f~~~~ 172 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA---TPVEIVILGVSFDEFTGELSIFNTSF 172 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEec---ccceEEEEEEEeccccCcccccccce
Confidence 46789999999997777777665555555543 33334555554 34455555332 22111 1
Q ss_pred eec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC--C---c---e--------------eEEEc-CCCccEEEEE
Q 011971 373 CMD-TGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT--M---S---K--------------LATLT-GHTFRVLYLA 428 (474)
Q Consensus 373 ~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~--~---~---~--------------~~~l~-~h~~~V~~l~ 428 (474)
.+. .+..|.++....+|+.+++ | .||.|+=.-|.. + + + +..+. .+..+|..++
T Consensus 173 ~i~~dg~~V~~I~~t~nGRIF~~--G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTENGRIFFA--G-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred eeecCCceEEEEEeccCCcEEEe--e-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 222 2567889998888988887 5 566444322221 0 0 0 11223 5677999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCC
Q 011971 429 ISPDGQTIVTGAGDETLRFWNVFPSP 454 (474)
Q Consensus 429 ~spdg~~l~t~s~Dg~I~iW~l~~~~ 454 (474)
....-..|.+-+..|+|.+|++....
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred eccccceeeeeccCceEEEEEccCCC
Confidence 98888899999999999999999743
No 458
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=90.24 E-value=33 Score=37.88 Aligned_cols=68 Identities=19% Similarity=0.150 Sum_probs=50.6
Q ss_pred CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEE----c-----------C----CCccEEEEEECCCCCEEE
Q 011971 377 GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATL----T-----------G----HTFRVLYLAISPDGQTIV 437 (474)
Q Consensus 377 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l----~-----------~----h~~~V~~l~~spdg~~l~ 437 (474)
...|.++....-+..++. .+.||.|.++|-.+++.+... . | +-..+..++|||.+..++
T Consensus 259 ~~~V~si~~~~~~~~v~~--~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v 336 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAF--AFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLV 336 (753)
T ss_pred CCeEEEEEecccCcEEEE--EEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEE
Confidence 345677777777777777 779999999998888665444 1 0 112345689999999999
Q ss_pred EEeCCCcEE
Q 011971 438 TGAGDETLR 446 (474)
Q Consensus 438 t~s~Dg~I~ 446 (474)
.-..||.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 999999965
No 459
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.19 E-value=1.2 Score=29.16 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=26.3
Q ss_pred CCEEEEEEcCCC---CEEEEEeCCCcEEEecCCC
Q 011971 209 DSVCSVGWANRN---THLAVGTSHGKVQIWDASR 239 (474)
Q Consensus 209 ~~V~~v~~sp~g---~~la~gs~dg~I~iwd~~~ 239 (474)
+.|.++.|+|+. ++|+..-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999999744 5888888899999999985
No 460
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.09 E-value=10 Score=31.68 Aligned_cols=109 Identities=18% Similarity=0.191 Sum_probs=69.1
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCC--------cceEEEccCCCcEEEEEECC----CCCcEEEEecCCCCCeEEEE
Q 011971 296 GLKWSYDNRELASGGNDNRLFVWNQHST--------QPVLKYCEHTAAVKAIAWSP----HLHGLLASGGGTADRCIRFW 363 (474)
Q Consensus 296 ~l~~spd~~~lasg~~Dg~v~iwd~~~~--------~~~~~~~~h~~~V~~l~~sp----~~~~ll~sg~Gt~d~~I~iw 363 (474)
.-+|......|++++.-|+|.|++.... ..+..+ .-...|++|+--+ ++.-+|+.| ....|..|
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliG---t~t~llaY 78 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIG---TQTSLLAY 78 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEe---ccceEEEE
Confidence 3456666668899999999999987633 223333 4456777776554 234577776 47889999
Q ss_pred ECCCCceeeeecCCCCeEEEEEcCC---CCeEEEEEecCCCeEEEEECCC
Q 011971 364 NTTTNTHLSCMDTGSQVCNLVWSKN---VNELVSTHGYSQNQIIVWRYPT 410 (474)
Q Consensus 364 d~~~~~~~~~~~~~~~v~~l~~s~~---~~~l~~~~g~~dg~I~iwd~~~ 410 (474)
|+.....+...+....+.++.+-.- ...++.+ | ..-.|.-||..-
T Consensus 79 DV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~iv-G-Gncsi~Gfd~~G 126 (136)
T PF14781_consen 79 DVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIV-G-GNCSIQGFDYEG 126 (136)
T ss_pred EcccCchhhhhhCccceeEEEEEecCCCCCcEEEE-C-ceEEEEEeCCCC
Confidence 9998887776666777777776432 2334442 3 234455555433
No 461
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.87 E-value=24 Score=35.77 Aligned_cols=141 Identities=9% Similarity=0.108 Sum_probs=81.3
Q ss_pred CCEEEEEeCCCcEEEecCCCCe-----EEEEecCCCCcEEEEEec------CCEEEEEeCCCcEEEEECcCCc-------
Q 011971 220 NTHLAVGTSHGKVQIWDASRCK-----RVRTMEGHRLRVGALAWS------SSLLSSGSRDKSILQRDIRAQE------- 281 (474)
Q Consensus 220 g~~la~gs~dg~I~iwd~~~~~-----~~~~~~~h~~~V~~l~~~------~~~l~sgs~dg~I~iwd~~~~~------- 281 (474)
...|++|+..|.++||+..... .+-. ..-..+|..+... ....++.-.-..+.+|.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 4689999999999999985432 1111 1234677777653 2334444566677777763221
Q ss_pred c-eEeeecCcC--CCEEEEEEec----C-CCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEec
Q 011971 282 D-FVSKLSGHK--SEVCGLKWSY----D-NRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGG 353 (474)
Q Consensus 282 ~-~~~~~~~h~--~~V~~l~~sp----d-~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~ 353 (474)
. .+..+..|. .....+++-| . ..++.+=+.||.+.+|+-+.......+.. .--...++|++.-..++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~s- 193 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTAS- 193 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEec-
Confidence 0 122222232 2233333333 2 35788889999999999775543333332 22334577777766566654
Q ss_pred CCCCCeEEEEEC
Q 011971 354 GTADRCIRFWNT 365 (474)
Q Consensus 354 Gt~d~~I~iwd~ 365 (474)
.+..|.-|..
T Consensus 194 --ss~~l~~Yky 203 (418)
T PF14727_consen 194 --SSWTLECYKY 203 (418)
T ss_pred --CceeEEEecH
Confidence 4667776653
No 462
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.73 E-value=3 Score=41.70 Aligned_cols=156 Identities=18% Similarity=0.080 Sum_probs=96.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEE-EEe-cCCCC----cEE-EEE-ec-CCEEEEEeCCCcEEEE-EC
Q 011971 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRV-RTM-EGHRL----RVG-ALA-WS-SSLLSSGSRDKSILQR-DI 277 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~-~~~-~~h~~----~V~-~l~-~~-~~~l~sgs~dg~I~iw-d~ 277 (474)
...|..+-..|||+.|.+-+. .++.|+++.+.... +.+ ....+ .|+ .+. .. +..|+.++.||.|..| |+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence 467788889999998888765 57889988754321 111 11111 122 111 12 4578899999999888 66
Q ss_pred cCCcce----EeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEEec
Q 011971 278 RAQEDF----VSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGG 353 (474)
Q Consensus 278 ~~~~~~----~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~ 353 (474)
+..... +..++-...++..+.-..+.+-+++-+..|++.++.....+.+..- .-...+.-++++|.+.+++.-
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~-~~~~~~~~~~~Sp~~~~Ll~e-- 375 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE-RAYQAPQLVAMSPNQAYLLSE-- 375 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh-hhhcCcceeeeCcccchheee--
Confidence 654421 2222222344444433334456777788888888876555444322 223366789999999987774
Q ss_pred CCCCCeEEEEECCCCc
Q 011971 354 GTADRCIRFWNTTTNT 369 (474)
Q Consensus 354 Gt~d~~I~iwd~~~~~ 369 (474)
..|.|+++.+.+..
T Consensus 376 --~~gki~~~~l~Nr~ 389 (733)
T COG4590 376 --DQGKIRLAQLENRN 389 (733)
T ss_pred --cCCceEEEEecCCC
Confidence 46889999887654
No 463
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.73 E-value=11 Score=38.59 Aligned_cols=28 Identities=18% Similarity=-0.013 Sum_probs=22.5
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEE
Q 011971 292 SEVCGLKWSYDNRELASGGNDNRLFVWN 319 (474)
Q Consensus 292 ~~V~~l~~spd~~~lasg~~Dg~v~iwd 319 (474)
-+|..+..++.|..++-.|.+|.+.++=
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEc
Confidence 4577888899999999999998766543
No 464
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=89.57 E-value=19 Score=42.23 Aligned_cols=227 Identities=12% Similarity=0.142 Sum_probs=125.7
Q ss_pred CCEEEEEEcCCCCE-EEEEeCCCcEEEecCCCC------eE--EEEecCCCCcEEEEEecCCEEEEEeCCCcEEEEECcC
Q 011971 209 DSVCSVGWANRNTH-LAVGTSHGKVQIWDASRC------KR--VRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRA 279 (474)
Q Consensus 209 ~~V~~v~~sp~g~~-la~gs~dg~I~iwd~~~~------~~--~~~~~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~ 279 (474)
..+.+...+++|.. +.++.....+++|++... +. .-.+.+-.....++.++++.|+++..+|.++.-|+..
T Consensus 438 ~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~drLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 438 DKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSNDRLFVADSEGKLYSADLPA 517 (1774)
T ss_pred hhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCCeEEEEeCCCCEEeccccc
Confidence 45677778888886 555555556799998643 11 2223344447778888889999999999998887754
Q ss_pred Ccce---E-----ee------ecCc----------------------CCCEEEEEEecCCCEE-----------------
Q 011971 280 QEDF---V-----SK------LSGH----------------------KSEVCGLKWSYDNREL----------------- 306 (474)
Q Consensus 280 ~~~~---~-----~~------~~~h----------------------~~~V~~l~~spd~~~l----------------- 306 (474)
.... + .. -.++ .+.+.+..|..++..|
T Consensus 518 ~~~~~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlikd~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~G 597 (1774)
T PF11725_consen 518 AQDNEPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIKDRQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRG 597 (1774)
T ss_pred ccCCCcceEeccccccccccccccccceeeccccCCCCeeeEEEeccCCceeeccccccCCccCCCCcccceeEeeccCC
Confidence 3210 0 00 0011 1223333333222111
Q ss_pred -------------------EEEeCCCcEEEEECCCCcc------------------eEEEccCCCcEEEEEECCCCCcEE
Q 011971 307 -------------------ASGGNDNRLFVWNQHSTQP------------------VLKYCEHTAAVKAIAWSPHLHGLL 349 (474)
Q Consensus 307 -------------------asg~~Dg~v~iwd~~~~~~------------------~~~~~~h~~~V~~l~~sp~~~~ll 349 (474)
..|-.||.|..||-.+... .+. -..+.|..+.+++....+.
T Consensus 598 L~~~~~p~~~~~ldl~r~G~v~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYV--Lk~G~vk~l~i~~~~~~~~ 675 (1774)
T PF11725_consen 598 LPKPPAPAPHEILDLGRAGLVGLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYV--LKDGKVKRLSINQEHPSIA 675 (1774)
T ss_pred CCCCCCCChHHhhccccccceeeccceEeeecCcchhhhhccCcCHHHHhccccCCceE--ecCCceeeeecccCCCccc
Confidence 1233467777777543210 111 1345666666666544332
Q ss_pred EEecCCCCCeEEEEEC----CCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeE-EEcCCCccE
Q 011971 350 ASGGGTADRCIRFWNT----TTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLA-TLTGHTFRV 424 (474)
Q Consensus 350 ~sg~Gt~d~~I~iwd~----~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~-~l~~h~~~V 424 (474)
. | .+..+.+=-. .-|..+.-++ ...|..++.-.+.++++. ..+|.+..+. ..+.++. ...+-.+.|
T Consensus 676 ~-g---~~~~~a~~~~r~~~e~G~~l~Gl~-~~~i~a~Avv~~~~fval---d~qg~lt~h~-k~g~p~~l~~~gl~G~i 746 (1774)
T PF11725_consen 676 H-G---DNNVFALPQRRNKVELGDALEGLE-DRVITAFAVVNDNKFVAL---DDQGDLTAHQ-KPGRPVPLSRPGLSGEI 746 (1774)
T ss_pred c-C---CCcccccccccCCCCCCccccCCC-cCcceeEEEEcCCceEEe---ccCCcccccc-CCCCCccCCCCCCCcch
Confidence 2 1 2222221111 1133333333 556888888777666665 4788998888 4444322 223557889
Q ss_pred EEEEECCCCCEEEEEeCCCcEEE
Q 011971 425 LYLAISPDGQTIVTGAGDETLRF 447 (474)
Q Consensus 425 ~~l~~spdg~~l~t~s~Dg~I~i 447 (474)
.+|++..+.. |++...+|.|+.
T Consensus 747 k~l~lD~~~n-L~Alt~~G~Lf~ 768 (1774)
T PF11725_consen 747 KDLALDEKQN-LYALTSTGELFR 768 (1774)
T ss_pred hheeeccccc-eeEecCCCceee
Confidence 9999977654 555667777654
No 465
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=89.50 E-value=24 Score=39.92 Aligned_cols=180 Identities=16% Similarity=0.159 Sum_probs=103.6
Q ss_pred EEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcC-------C--CCEEEEEeC---------CCcEEEecCCC----
Q 011971 182 AVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAN-------R--NTHLAVGTS---------HGKVQIWDASR---- 239 (474)
Q Consensus 182 a~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp-------~--g~~la~gs~---------dg~I~iwd~~~---- 239 (474)
..+....|.+-+..+++++..+++.....|++++... . ..|||+|+. -|.+.|||+-.
T Consensus 999 p~~~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPe 1078 (1366)
T KOG1896|consen 999 PEGEQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPE 1078 (1366)
T ss_pred cccccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCC
Confidence 3344457888888888887777776677777776642 1 358998864 47899999621
Q ss_pred -Ce-----EEEEe--cCCCCcEEEEEecCCEEEEEeCCCcEEEEECcCCcceEe-eecCcCCCEEEEEEecCCCEEEEEe
Q 011971 240 -CK-----RVRTM--EGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQEDFVS-KLSGHKSEVCGLKWSYDNRELASGG 310 (474)
Q Consensus 240 -~~-----~~~~~--~~h~~~V~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~spd~~~lasg~ 310 (474)
++ .++.+ +...+.|..++=-..+|+++. ...|.+|+++.....+. .+.. -++.-....--+++|+.|.
T Consensus 1079 pgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~-GqKI~v~~l~r~~~ligVaFiD--~~~yv~s~~~vknlIl~gD 1155 (1366)
T KOG1896|consen 1079 PGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQ-GQKIIVRKLDRDSELIGVAFID--LPLYVHSMKVVKNLILAGD 1155 (1366)
T ss_pred CCCCcccceeeeeehhhcccceEEEEEeccEEEEcc-CcEEEEEEeccCCcceeeEEec--cceeEEehhhhhhheehhh
Confidence 21 22222 246678888776555665554 35799999954432221 1111 1122222222345666666
Q ss_pred CCCcEEEEECCCCcc-eEEEc--cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEEC
Q 011971 311 NDNRLFVWNQHSTQP-VLKYC--EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNT 365 (474)
Q Consensus 311 ~Dg~v~iwd~~~~~~-~~~~~--~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~ 365 (474)
--..|.+.-....-. +.-+. ...-.+.++.|--+|..|-...+ ..|+.|++|-.
T Consensus 1156 V~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvs-Da~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1156 VMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVS-DADRNIHVYMY 1212 (1366)
T ss_pred hhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEE-cCCCcEEEEEe
Confidence 555565554433211 21121 12346788888888876533332 27899988754
No 466
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.34 E-value=1.9 Score=28.18 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=25.1
Q ss_pred CcEEEEEECCCCC--cEEEEecCCCCCeEEEEECCC
Q 011971 334 AAVKAIAWSPHLH--GLLASGGGTADRCIRFWNTTT 367 (474)
Q Consensus 334 ~~V~~l~~sp~~~--~ll~sg~Gt~d~~I~iwd~~~ 367 (474)
++|.++.|+|... .||+..- .-+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E--~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAE--HQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEc--cCCeEEEEEccc
Confidence 4789999998654 5666654 578899999995
No 467
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=89.29 E-value=31 Score=36.10 Aligned_cols=242 Identities=13% Similarity=0.078 Sum_probs=114.4
Q ss_pred CcEEEEEcCCeEEEEeCCCCC-EEEEEecCC-CCCEEEEEEcCCC-CEEEEEeCCCc--EEEecCCCCeEEEEecCCCCc
Q 011971 178 HNVLAVGLGNCVYLWNACSSK-VTKLCDLGI-DDSVCSVGWANRN-THLAVGTSHGK--VQIWDASRCKRVRTMEGHRLR 252 (474)
Q Consensus 178 ~~~la~~~d~~V~lwd~~~~~-~~~~~~~~~-~~~V~~v~~sp~g-~~la~gs~dg~--I~iwd~~~~~~~~~~~~h~~~ 252 (474)
..++.+..+|.++...+.... ...+..++. ....+++.+..+| .+|++|+.-|. +.-|....-+.+..+. .-++
T Consensus 223 ~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~P 301 (504)
T PF10433_consen 223 DRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWGP 301 (504)
T ss_dssp SEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----S
T ss_pred CEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcCC
Confidence 456777778888887765433 223333333 4566777777665 57888887554 4444434444555554 4467
Q ss_pred EEEEEec------CC------EEEEEe---CCCcEEEEECcCCcc-eEeeecCc--CCCEEEEEEec-CCCEEEEEeCCC
Q 011971 253 VGALAWS------SS------LLSSGS---RDKSILQRDIRAQED-FVSKLSGH--KSEVCGLKWSY-DNRELASGGNDN 313 (474)
Q Consensus 253 V~~l~~~------~~------~l~sgs---~dg~I~iwd~~~~~~-~~~~~~~h--~~~V~~l~~sp-d~~~lasg~~Dg 313 (474)
|.+++.- .. .|++++ .+|.+++..---+-. ........ -..++.+.... ++.+|+....+
T Consensus 302 i~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~- 380 (504)
T PF10433_consen 302 IVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPN- 380 (504)
T ss_dssp EEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESS-
T ss_pred ccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCC-
Confidence 8877773 11 555554 456777663211111 01111111 22344444322 24566666554
Q ss_pred cEEEEECC---CCcceEEEc-----cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC--CCCeEEE
Q 011971 314 RLFVWNQH---STQPVLKYC-----EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDT--GSQVCNL 383 (474)
Q Consensus 314 ~v~iwd~~---~~~~~~~~~-----~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~--~~~v~~l 383 (474)
.-+++.+. ..+.+..+. .....+.+-.+. + ..++=. ....|++.+...++....+.. +..|.+.
T Consensus 381 ~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~-~-~~ivQV----t~~~i~l~~~~~~~~~~~w~~~~~~~I~~a 454 (504)
T PF10433_consen 381 ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG-D-GRIVQV----TPKGIRLIDLEDGKLTQEWKPPAGSIIVAA 454 (504)
T ss_dssp EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET-T-TEEEEE----ESSEEEEEESSSTSEEEEEE-TTS---SEE
T ss_pred ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC-C-CeEEEE----ecCeEEEEECCCCeEEEEEeCCCCCeEEEE
Confidence 44455543 233332221 112223333333 2 223333 256789999888777766643 3344444
Q ss_pred EEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEc-C----CCccEEEEEECC
Q 011971 384 VWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLT-G----HTFRVLYLAISP 431 (474)
Q Consensus 384 ~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~----h~~~V~~l~~sp 431 (474)
+.+ +..+++ ...++.+..+.+.......... . ....|.++...|
T Consensus 455 ~~~--~~~v~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 455 SIN--DPQVLV--ALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EES--SSEEEE--EE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEC--CCEEEE--EEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 443 345555 3367888888887665543322 1 456788887765
No 468
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.90 E-value=18 Score=32.88 Aligned_cols=139 Identities=10% Similarity=0.136 Sum_probs=81.6
Q ss_pred EEEEEeCCCcEEEEECC--CCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCC---eEEEE---ECC--CCce----
Q 011971 305 ELASGGNDNRLFVWNQH--STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR---CIRFW---NTT--TNTH---- 370 (474)
Q Consensus 305 ~lasg~~Dg~v~iwd~~--~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~---~I~iw---d~~--~~~~---- 370 (474)
.|..+...+.|.+|++. ..+...+|.. -+.|..++++..|+++++.-.-.... .+|+| ... ....
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 44444566789999988 3355666643 47899999999999888775322223 56665 221 1111
Q ss_pred -------------------eeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce------eEEEc-----CC
Q 011971 371 -------------------LSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSK------LATLT-----GH 420 (474)
Q Consensus 371 -------------------~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~------~~~l~-----~h 420 (474)
+-++.....+.+++-.|....|++ | .++.+.+|.+..... +..+. -|
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV--g-~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV--G-CGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE--E-cCCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 112223446778888886555665 3 578899998754322 11111 11
Q ss_pred C-ccEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 011971 421 T-FRVLYLAISPDGQTIVTGAGDETLRFWNV 450 (474)
Q Consensus 421 ~-~~V~~l~~spdg~~l~t~s~Dg~I~iW~l 450 (474)
. -....+++. +.++|..+. -.+++.++
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred cCceEEEEEEE--eeEEEEecC-CEEEEEEE
Confidence 1 235566664 557877654 46677665
No 469
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.82 E-value=5.7 Score=40.46 Aligned_cols=130 Identities=18% Similarity=0.191 Sum_probs=83.5
Q ss_pred CCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCC-------EEEEEeCCCcEEEecCC-CCeEEEEecCCCCcEEEEE
Q 011971 186 GNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNT-------HLAVGTSHGKVQIWDAS-RCKRVRTMEGHRLRVGALA 257 (474)
Q Consensus 186 d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~-------~la~gs~dg~I~iwd~~-~~~~~~~~~~h~~~V~~l~ 257 (474)
...+|--|++-|+++..+.++ +.| -+.|.|+.+ .-++|-.+..|.-.|.. .+..+.... ...-++.-.
T Consensus 489 ~~kLykmDIErGkvveeW~~~--ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~tKn~ 564 (776)
T COG5167 489 RDKLYKMDIERGKVVEEWDLK--DDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKTKNK 564 (776)
T ss_pred cccceeeecccceeeeEeecC--Ccc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehhcccccc
Confidence 357888899999999988753 233 567777432 23456556555555543 222222211 111122222
Q ss_pred e------cCCEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011971 258 W------SSSLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQH 321 (474)
Q Consensus 258 ~------~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~ 321 (474)
| ...++++|++.|.|++||--... ....+.+....|..+..+.+|.++++.+. +.+.+-|++
T Consensus 565 Fss~~tTesGyIa~as~kGDirLyDRig~r-AKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 565 FSSGMTTESGYIAAASRKGDIRLYDRIGKR-AKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ccccccccCceEEEecCCCceeeehhhcch-hhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 2 25799999999999999953322 34455667788999999999999887765 577777765
No 470
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.73 E-value=18 Score=39.09 Aligned_cols=216 Identities=12% Similarity=0.171 Sum_probs=104.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEecCCCCeEEEEec--C----CCCcEEEEEecC--CEEEEEeCCCcEEEEECcC
Q 011971 208 DDSVCSVGWANRNTHLAVGTSHGKVQIWDASRCKRVRTME--G----HRLRVGALAWSS--SLLSSGSRDKSILQRDIRA 279 (474)
Q Consensus 208 ~~~V~~v~~sp~g~~la~gs~dg~I~iwd~~~~~~~~~~~--~----h~~~V~~l~~~~--~~l~sgs~dg~I~iwd~~~ 279 (474)
.+.|.+.+||.|.+.+++...+..|.+++-. ...+.... . .-+.--.+-|.. ..+- +..-...+.|..-
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~-fd~ise~~L~~~dl~ef~khi~VgWgkketqfr--gk~~raqlrdptm 188 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTREILLFDKY-FDPISEYHLKKSDLVEFGKHIRVGWGKKETQFR--GKGARAQLRDPTM 188 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCceEEEEecc-ccccchhhcchhHHHHhccceEeeecccchhcc--ccchhhhccCCCC
Confidence 6789999999999988888888888888632 11111110 0 000111223321 0000 0000112222111
Q ss_pred Ccc----eEeeecCcCCCEEEEEEecCCCEEEEEeCC----CcEEEEECCCCcceEEEccCCCcEEEEEECCCCCcEEEE
Q 011971 280 QED----FVSKLSGHKSEVCGLKWSYDNRELASGGND----NRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLAS 351 (474)
Q Consensus 280 ~~~----~~~~~~~h~~~V~~l~~spd~~~lasg~~D----g~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll~s 351 (474)
+.. -+..+..|. .-+.|-.|..+.+++... ..+++|.-. |+.-..-....+.-..+.|-|.|..+...
T Consensus 189 p~~vD~G~l~avd~~k---~~i~wrgD~~y~~v~r~Ee~prra~rvysre-g~lds~sep~~g~e~~LSWkpqgS~~ati 264 (1243)
T COG5290 189 PYMVDYGDLFAVDTNK---KIIFWRGDTEYNLVGRSEERPRRAFRVYSRE-GQLDSASEPVTGMEHQLSWKPQGSKYATI 264 (1243)
T ss_pred cccccccceeEeeCCc---eEEEEccCcceeeecchhcccccceeeeccc-cccccccCCcccchhccccccCCceeeee
Confidence 110 011111121 234566666666665432 235555422 21111111122233458999999855444
Q ss_pred ec--CCCCCeEEEEECC---CCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEcCCCccEEE
Q 011971 352 GG--GTADRCIRFWNTT---TNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTFRVLY 426 (474)
Q Consensus 352 g~--Gt~d~~I~iwd~~---~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~ 426 (474)
+. ....-.+.++.-+ -|+.-........+..++|+-....++++ ..+.|.+|-..+..-.....-.-..+..
T Consensus 265 ~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~---~~n~~~lwttkNyhWYLK~e~~ip~~s~ 341 (1243)
T COG5290 265 GTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA---EGNLLKLWTTKNYHWYLKVERQIPGISY 341 (1243)
T ss_pred ccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh---hcceEEEEEccceEEEEEEeecCCCcce
Confidence 41 1112236666532 23322223334456677888777777764 5688999988765543333333445777
Q ss_pred EEECCCC
Q 011971 427 LAISPDG 433 (474)
Q Consensus 427 l~~spdg 433 (474)
+.|+|..
T Consensus 342 vkwhpe~ 348 (1243)
T COG5290 342 VKWHPEE 348 (1243)
T ss_pred eeecccc
Confidence 8899853
No 471
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.43 E-value=11 Score=39.91 Aligned_cols=74 Identities=20% Similarity=0.180 Sum_probs=44.4
Q ss_pred cCCEEEEEeCCCcEEEEECcC---Cc-ceEee----------ec-----------CcCCCEEEEEEec----CCCEEEEE
Q 011971 259 SSSLLSSGSRDKSILQRDIRA---QE-DFVSK----------LS-----------GHKSEVCGLKWSY----DNRELASG 309 (474)
Q Consensus 259 ~~~~l~sgs~dg~I~iwd~~~---~~-~~~~~----------~~-----------~h~~~V~~l~~sp----d~~~lasg 309 (474)
++..|+.+..||.+....... .. ..... +. .....+..++++. +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 567777777788777766553 11 11000 00 1123455666666 67899999
Q ss_pred eCCCcEEEEECCCCcceEEEccC
Q 011971 310 GNDNRLFVWNQHSTQPVLKYCEH 332 (474)
Q Consensus 310 ~~Dg~v~iwd~~~~~~~~~~~~h 332 (474)
+.|++|++||+.+++++....-.
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEETT
T ss_pred eCCCeEEEEECCCCeEEEEeccc
Confidence 99999999999999987776443
No 472
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.83 E-value=15 Score=35.79 Aligned_cols=83 Identities=17% Similarity=0.171 Sum_probs=45.6
Q ss_pred CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCC----cEEEecCCCCeEEEEec---CC-CC---cEEE
Q 011971 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHG----KVQIWDASRCKRVRTME---GH-RL---RVGA 255 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg----~I~iwd~~~~~~~~~~~---~h-~~---~V~~ 255 (474)
..++.||..+.+...+-.+.........+..-++++.+.|+.++ .+.+||..+.+-...-. .+ .. ....
T Consensus 139 ~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~ 218 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAAS 218 (323)
T ss_pred ceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeE
Confidence 47899999988877664332212222222334577777787654 35688888765432211 01 10 1222
Q ss_pred EEe-cCCEEEEEeCC
Q 011971 256 LAW-SSSLLSSGSRD 269 (474)
Q Consensus 256 l~~-~~~~l~sgs~d 269 (474)
+.. .+.+++.|+.+
T Consensus 219 ~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 219 IKINESLLLCIGGFN 233 (323)
T ss_pred EEECCCEEEEECCcC
Confidence 333 35677888766
No 473
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=87.83 E-value=42 Score=35.95 Aligned_cols=240 Identities=12% Similarity=0.088 Sum_probs=121.9
Q ss_pred eeeeeCCC-CcEEEEEcCC-eEEEEeC-CCCCEEEEEecCCCCCEEEEEEcCC---CCEEEEEeCCCc-EEEecCCCC--
Q 011971 170 LNLVDWSS-HNVLAVGLGN-CVYLWNA-CSSKVTKLCDLGIDDSVCSVGWANR---NTHLAVGTSHGK-VQIWDASRC-- 240 (474)
Q Consensus 170 v~~l~~s~-~~~la~~~d~-~V~lwd~-~~~~~~~~~~~~~~~~V~~v~~sp~---g~~la~gs~dg~-I~iwd~~~~-- 240 (474)
......++ .+.+..|-.+ .|.-|=+ .+.+.+-.+.+..+..|.|+..... .++.++|-.++. .++-.++.+
T Consensus 30 ~vs~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~ 109 (670)
T PF10395_consen 30 QVSDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVG 109 (670)
T ss_pred eeecccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCc
Confidence 33335555 5666666544 3332222 1445555555566777888876543 235555544443 333333222
Q ss_pred ---------e--EEEEecCCCCcEEEEEec--CCEEEEEeCCCcEEEEECcCCcc-eEeeec-CcCC------CEEEEEE
Q 011971 241 ---------K--RVRTMEGHRLRVGALAWS--SSLLSSGSRDKSILQRDIRAQED-FVSKLS-GHKS------EVCGLKW 299 (474)
Q Consensus 241 ---------~--~~~~~~~h~~~V~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~-~h~~------~V~~l~~ 299 (474)
+ ....++ -...|-.+.+. +..+++.-.+|.|.+||...... .+..+. .+.. -|.....
T Consensus 110 ~~~~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~ 188 (670)
T PF10395_consen 110 STEDGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFEL 188 (670)
T ss_pred cccccccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhccccc
Confidence 1 111122 35678888886 58899999999999999932210 011111 1221 1222111
Q ss_pred ecCCCEEEEEeC-C---CcEEEEEC-CCCcceEEEc---cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee
Q 011971 300 SYDNRELASGGN-D---NRLFVWNQ-HSTQPVLKYC---EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHL 371 (474)
Q Consensus 300 spd~~~lasg~~-D---g~v~iwd~-~~~~~~~~~~---~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~ 371 (474)
-....++++-+. + -..+++.+ .....+..+. .+........|+-....|+.- .++.|.+|++...+..
T Consensus 189 ~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l----~~~~i~~ysip~f~~~ 264 (670)
T PF10395_consen 189 ENGKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL----SKKTISSYSIPNFQIQ 264 (670)
T ss_pred ccCCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE----eCCEEEEEEcCCceEE
Confidence 111234443333 2 23566776 1223333332 222233344444333334443 4789999999888877
Q ss_pred eeecCC-------CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceeEEEc
Q 011971 372 SCMDTG-------SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLT 418 (474)
Q Consensus 372 ~~~~~~-------~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~ 418 (474)
.++... ..+.++.--...+.|++ .++.|++.|+.-...+.++.
T Consensus 265 ~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs----~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 265 KTISLPSIIDKESDDLVSLKPPSPNRVLLS----VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred EEEEechhhccccccceEeecCCCCeEEEE----cCCEEEEEeehhhhhhhhhh
Confidence 776643 23444432223344444 57899999987655555544
No 474
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.79 E-value=29 Score=37.55 Aligned_cols=111 Identities=11% Similarity=0.129 Sum_probs=70.3
Q ss_pred EEEEEECCCC-CcEEEEecCCCCCeEEEEECCC-------C-------------ceeeeecCCCCeEEEEEc--CCCCeE
Q 011971 336 VKAIAWSPHL-HGLLASGGGTADRCIRFWNTTT-------N-------------THLSCMDTGSQVCNLVWS--KNVNEL 392 (474)
Q Consensus 336 V~~l~~sp~~-~~ll~sg~Gt~d~~I~iwd~~~-------~-------------~~~~~~~~~~~v~~l~~s--~~~~~l 392 (474)
|+.|...--+ ..+|+.+. .||.|.+|.+.+ . ++...+..+..++++++. ...+.+
T Consensus 103 IN~i~v~~lg~~EVLl~c~--DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCT--DDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeEEEecccCCeeEEEEEe--cCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEE
Confidence 4444443322 23455544 899999997631 0 122334456778999998 777788
Q ss_pred EEEEecCCCeEEEEECCCC-ceeEE--EcCCCccEEEEEECCCC---C---EEEEEeCCCcEEEEeC
Q 011971 393 VSTHGYSQNQIIVWRYPTM-SKLAT--LTGHTFRVLYLAISPDG---Q---TIVTGAGDETLRFWNV 450 (474)
Q Consensus 393 ~~~~g~~dg~I~iwd~~~~-~~~~~--l~~h~~~V~~l~~spdg---~---~l~t~s~Dg~I~iW~l 450 (474)
|+ +.....|.||-+... ..... -..|...|-+|+|-++. . +|++++-.|.+.+|++
T Consensus 181 AV--SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AV--SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EE--ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 87 667777888766432 11111 11255668889987643 2 7888999999999888
No 475
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.66 E-value=16 Score=37.59 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=23.3
Q ss_pred cEEEEEECCCC---CEEEEEeCCCcEEEEeCCCCCCC
Q 011971 423 RVLYLAISPDG---QTIVTGAGDETLRFWNVFPSPKS 456 (474)
Q Consensus 423 ~V~~l~~spdg---~~l~t~s~Dg~I~iW~l~~~~~~ 456 (474)
.+..++|+|+. ..|+.-+.|.+||+|++......
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 35567777754 46666777888888887766544
No 476
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.63 E-value=17 Score=36.60 Aligned_cols=153 Identities=13% Similarity=0.218 Sum_probs=88.5
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEECCCC--cceEEE-ccCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCce
Q 011971 294 VCGLKWSYDNRELASGGNDNRLFVWNQHST--QPVLKY-CEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTH 370 (474)
Q Consensus 294 V~~l~~spd~~~lasg~~Dg~v~iwd~~~~--~~~~~~-~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~ 370 (474)
-+++-|...+++|+ +...|.+.=|-.... .....+ ....++|.++.|++|.+ ++|.-- .|..|.+++....+.
T Consensus 25 sngvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR--~~~~v~f~nf~~d~~ 100 (657)
T KOG2377|consen 25 SNGVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK-ILAVQR--TSKTVDFCNFIPDNS 100 (657)
T ss_pred ccceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc-eEEEEe--cCceEEEEecCCCch
Confidence 34454543333333 333344555554432 112222 24567999999999977 555543 799999999854443
Q ss_pred eeee----cCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC-ceeEEEcCCCccEEEEEECCCCCEEEEEe--CC
Q 011971 371 LSCM----DTG-SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTM-SKLATLTGHTFRVLYLAISPDGQTIVTGA--GD 442 (474)
Q Consensus 371 ~~~~----~~~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~t~s--~D 442 (474)
.... +.+ ..|....|+.. ..++.+ .+.-+-+|-.... ..+...+.|...|.-..|.++-+.++-++ ..
T Consensus 101 ~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i---~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~ 176 (657)
T KOG2377|consen 101 QLEYTQECKTKNANILGFCWTSS-TEIAFI---TDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLE 176 (657)
T ss_pred hhHHHHHhccCcceeEEEEEecC-eeEEEE---ecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccc
Confidence 3222 223 34888999877 555553 3444666665433 34555567888888889999877544333 33
Q ss_pred CcEEEEeCCCCC
Q 011971 443 ETLRFWNVFPSP 454 (474)
Q Consensus 443 g~I~iW~l~~~~ 454 (474)
+++.=+.+..+.
T Consensus 177 n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 177 NVLNPFHFRAGT 188 (657)
T ss_pred cccccEEEeece
Confidence 444444444443
No 477
>PLN02193 nitrile-specifier protein
Probab=87.40 E-value=27 Score=36.24 Aligned_cols=134 Identities=12% Similarity=0.121 Sum_probs=71.2
Q ss_pred CeEEEEeCCCCCEEEEEecC---CCCCEEEEEEcCCCCEEEEEeCCC-----cEEEecCCCCeEEEEec-----CCCCcE
Q 011971 187 NCVYLWNACSSKVTKLCDLG---IDDSVCSVGWANRNTHLAVGTSHG-----KVQIWDASRCKRVRTME-----GHRLRV 253 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~---~~~~V~~v~~sp~g~~la~gs~dg-----~I~iwd~~~~~~~~~~~-----~h~~~V 253 (474)
+.++++|..+.+..++...+ ....-.++. .-++++++.|+.++ .+..||+.+.+-...-. ......
T Consensus 244 ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~ 322 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA 322 (470)
T ss_pred ccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc
Confidence 46899999988776654331 111112222 22456666776543 46788887765432111 111122
Q ss_pred EEEEecCCEEEEEeCC----CcEEEEECcCCcceEeeecCc-----CCCEEEEEEecCCCEEEEEeCC------------
Q 011971 254 GALAWSSSLLSSGSRD----KSILQRDIRAQEDFVSKLSGH-----KSEVCGLKWSYDNRELASGGND------------ 312 (474)
Q Consensus 254 ~~l~~~~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~h-----~~~V~~l~~spd~~~lasg~~D------------ 312 (474)
....+.+.+++.|+.+ ..+.+||+.+.. ...+... .....+++ .-++++++.|+.+
T Consensus 323 ~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~--W~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~ 399 (470)
T PLN02193 323 GLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDK--WTQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQ 399 (470)
T ss_pred EEEEECCcEEEEECCCCCccCceEEEECCCCE--EEEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccc
Confidence 2334567777777765 458889987754 2222111 11112222 2356777787753
Q ss_pred --CcEEEEECCCCc
Q 011971 313 --NRLFVWNQHSTQ 324 (474)
Q Consensus 313 --g~v~iwd~~~~~ 324 (474)
+.+.++|+.+.+
T Consensus 400 ~~ndv~~~D~~t~~ 413 (470)
T PLN02193 400 LTDGTFALDTETLQ 413 (470)
T ss_pred eeccEEEEEcCcCE
Confidence 247778877654
No 478
>PLN02153 epithiospecifier protein
Probab=87.31 E-value=31 Score=33.87 Aligned_cols=95 Identities=12% Similarity=0.088 Sum_probs=50.7
Q ss_pred CeEEEEeCCCCCEEEEEecC----CCCCEEEEEEcCCCCEEEEEeCC-----------CcEEEecCCCCeEEEEec----
Q 011971 187 NCVYLWNACSSKVTKLCDLG----IDDSVCSVGWANRNTHLAVGTSH-----------GKVQIWDASRCKRVRTME---- 247 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~----~~~~V~~v~~sp~g~~la~gs~d-----------g~I~iwd~~~~~~~~~~~---- 247 (474)
..|++||..+.+...+-.+. ........+..-++++++.|+.+ ..|.+||..+.+-...-.
T Consensus 101 ~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~ 180 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGEN 180 (341)
T ss_pred CcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCC
Confidence 36889999888776553321 11111212222356666777653 247788988765432111
Q ss_pred -CCCCcEEEEEecCCEEEEEeCC-------------CcEEEEECcCCc
Q 011971 248 -GHRLRVGALAWSSSLLSSGSRD-------------KSILQRDIRAQE 281 (474)
Q Consensus 248 -~h~~~V~~l~~~~~~l~sgs~d-------------g~I~iwd~~~~~ 281 (474)
..........+.+.+++.|+.+ ..|.+||+.+..
T Consensus 181 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~ 228 (341)
T PLN02153 181 FEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK 228 (341)
T ss_pred CCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence 1111223344566666666532 357888887654
No 479
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.14 E-value=36 Score=34.39 Aligned_cols=107 Identities=8% Similarity=0.124 Sum_probs=66.4
Q ss_pred cCCCEEEEEEecCCCEEEEEeCCCcEEEEECCCCc-----ceEEEcc--CCCcEEEEEECCCCCcEEEEecCCCCCeEEE
Q 011971 290 HKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQ-----PVLKYCE--HTAAVKAIAWSPHLHGLLASGGGTADRCIRF 362 (474)
Q Consensus 290 h~~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~~~-----~~~~~~~--h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~i 362 (474)
....+.++.|.+++..++++ .+|.+.. ....++ ....... ....+.++.|.+++. ++++| ..|.+..
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G---~~G~v~~ 352 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAG---GSGILLR 352 (398)
T ss_pred CccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEE---CCCcEEE
Confidence 34568999999998877766 5565544 333332 2222211 223588999998765 77776 4776655
Q ss_pred EECCCCceeeeec----CCCCeEEEEEcCCCCeEEEEEecCCCeEEEE
Q 011971 363 WNTTTNTHLSCMD----TGSQVCNLVWSKNVNELVSTHGYSQNQIIVW 406 (474)
Q Consensus 363 wd~~~~~~~~~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 406 (474)
. ...|+.-.... .......+.|.++++.+++ | .+|.|.-|
T Consensus 353 s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~--G-~~G~il~~ 396 (398)
T PLN00033 353 S-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL--G-NDGVLLRY 396 (398)
T ss_pred e-CCCCcceeEccccCCCCcceeEEEEcCCCceEEE--e-CCcEEEEe
Confidence 4 34555433332 2456889999888877777 4 66766544
No 480
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=86.57 E-value=37 Score=33.92 Aligned_cols=185 Identities=18% Similarity=0.207 Sum_probs=102.6
Q ss_pred CEEEEEeCCCcEEEEECcCCcceEeeecCcCCCEEEEEEe----cCCCE--EEEEeC-C---CcEEEEECCCC-cceEEE
Q 011971 261 SLLSSGSRDKSILQRDIRAQEDFVSKLSGHKSEVCGLKWS----YDNRE--LASGGN-D---NRLFVWNQHST-QPVLKY 329 (474)
Q Consensus 261 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s----pd~~~--lasg~~-D---g~v~iwd~~~~-~~~~~~ 329 (474)
.+++....++-+.+||+.... +..+. .+.++.+..- -.|+. |+.+++ + +.|++|.+... ..+..+
T Consensus 69 SlIigTdK~~GL~VYdL~Gk~--lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDGKE--LQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp -EEEEEETTTEEEEEETTS-E--EEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred ceEEEEeCCCCEEEEcCCCcE--EEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 467777777888888887544 33332 1233333221 13332 444443 2 56888876532 123333
Q ss_pred cc-------CCCcEEEEEE--CC-CCCcEEEEecCCCCCeEEEEECC---CC----ceeeeecCCCCeEEEEEcCCCCeE
Q 011971 330 CE-------HTAAVKAIAW--SP-HLHGLLASGGGTADRCIRFWNTT---TN----THLSCMDTGSQVCNLVWSKNVNEL 392 (474)
Q Consensus 330 ~~-------h~~~V~~l~~--sp-~~~~ll~sg~Gt~d~~I~iwd~~---~~----~~~~~~~~~~~v~~l~~s~~~~~l 392 (474)
.. ....++.+|+ ++ ++...++..+ .+|.+..|-+. .+ +.++.+...+++..+........|
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~--k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG--KDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE--TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEec--CCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence 21 1234667776 34 3443333333 68887777653 33 457888889999999999999999
Q ss_pred EEEEecCCCeEEEEECCC-----CceeEEEcC--CCccEEEEEEC--CCC--CEEEEEeCCCcEEEEeCCCC
Q 011971 393 VSTHGYSQNQIIVWRYPT-----MSKLATLTG--HTFRVLYLAIS--PDG--QTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 393 ~~~~g~~dg~I~iwd~~~-----~~~~~~l~~--h~~~V~~l~~s--pdg--~~l~t~s~Dg~I~iW~l~~~ 453 (474)
++ +.++--|.-|+... ++.+....+ ....|-.|++- .+| .+|++.-++++..+|+....
T Consensus 223 Yv--gEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YV--GEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EE--EETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EE--ecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99 77777666666541 233333332 34567777764 343 35555557888999998754
No 481
>PLN02193 nitrile-specifier protein
Probab=86.36 E-value=44 Score=34.62 Aligned_cols=134 Identities=7% Similarity=-0.024 Sum_probs=68.3
Q ss_pred eEEEEeCCCCCEEEEEecC-CCC--CEEEEEEcCCCCEEEEEeCC-----CcEEEecCCCCeEEEEecC---CC--CcEE
Q 011971 188 CVYLWNACSSKVTKLCDLG-IDD--SVCSVGWANRNTHLAVGTSH-----GKVQIWDASRCKRVRTMEG---HR--LRVG 254 (474)
Q Consensus 188 ~V~lwd~~~~~~~~~~~~~-~~~--~V~~v~~sp~g~~la~gs~d-----g~I~iwd~~~~~~~~~~~~---h~--~~V~ 254 (474)
.+++||..+.+.......+ ... ...+....-++.+.+.|+.+ ..+.+||+.+.+-...-.. .. ....
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~ 273 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS 273 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence 4888999887765432111 011 11111112245666666654 3588899887654332111 11 1122
Q ss_pred EEEecCCEEEEEeCCC-----cEEEEECcCCcceEeeec------CcCCCEEEEEEecCCCEEEEEeCC----CcEEEEE
Q 011971 255 ALAWSSSLLSSGSRDK-----SILQRDIRAQEDFVSKLS------GHKSEVCGLKWSYDNRELASGGND----NRLFVWN 319 (474)
Q Consensus 255 ~l~~~~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~~------~h~~~V~~l~~spd~~~lasg~~D----g~v~iwd 319 (474)
.....+.+++.|+.++ .+..||+.+.. ...+. .......... -+++.++.|+.+ +.+.+||
T Consensus 274 ~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~R~~~~~~~--~~gkiyviGG~~g~~~~dv~~yD 349 (470)
T PLN02193 274 MAADEENVYVFGGVSATARLKTLDSYNIVDKK--WFHCSTPGDSFSIRGGAGLEV--VQGKVWVVYGFNGCEVDDVHYYD 349 (470)
T ss_pred EEEECCEEEEECCCCCCCCcceEEEEECCCCE--EEeCCCCCCCCCCCCCcEEEE--ECCcEEEEECCCCCccCceEEEE
Confidence 2334466777777653 36677776543 11111 1111111122 356777877765 4689999
Q ss_pred CCCCcc
Q 011971 320 QHSTQP 325 (474)
Q Consensus 320 ~~~~~~ 325 (474)
+.+.+-
T Consensus 350 ~~t~~W 355 (470)
T PLN02193 350 PVQDKW 355 (470)
T ss_pred CCCCEE
Confidence 887653
No 482
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.84 E-value=8.2 Score=35.46 Aligned_cols=74 Identities=14% Similarity=0.232 Sum_probs=52.6
Q ss_pred eeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEE-------ec------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 011971 170 LNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLC-------DL------GIDDSVCSVGWANRNTHLAVGTSHGKVQIWD 236 (474)
Q Consensus 170 v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~-------~~------~~~~~V~~v~~sp~g~~la~gs~dg~I~iwd 236 (474)
+..+.-....++++..+|.+++||+.+++..... .. .....|..+.++.+|.-|++- .+|....|+
T Consensus 15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~ 93 (219)
T PF07569_consen 15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYS 93 (219)
T ss_pred eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEec
Confidence 4445556677899999999999999987653322 10 245678999999888766655 468899998
Q ss_pred CCCCeEEE
Q 011971 237 ASRCKRVR 244 (474)
Q Consensus 237 ~~~~~~~~ 244 (474)
..-+.-+.
T Consensus 94 ~~L~~W~~ 101 (219)
T PF07569_consen 94 PDLGCWIR 101 (219)
T ss_pred cccceeEE
Confidence 76554443
No 483
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.67 E-value=17 Score=34.81 Aligned_cols=89 Identities=19% Similarity=0.309 Sum_probs=58.6
Q ss_pred CeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEe------CCCcEEEecCCCCeEEEEecC-----CCCcEEE
Q 011971 187 NCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGT------SHGKVQIWDASRCKRVRTMEG-----HRLRVGA 255 (474)
Q Consensus 187 ~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs------~dg~I~iwd~~~~~~~~~~~~-----h~~~V~~ 255 (474)
..|.+||..+.+....-. +-.+.|++|.|..+.++++.|. ....+..||..+.... .+.+ -.++|..
T Consensus 16 ~~lC~yd~~~~qW~~~g~-~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGN-GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCC-CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEE
Confidence 479999999888876653 4578999999997777777664 3456888998876543 3332 2467888
Q ss_pred EEec---C-CEEEEEe-CCC--cEEEEEC
Q 011971 256 LAWS---S-SLLSSGS-RDK--SILQRDI 277 (474)
Q Consensus 256 l~~~---~-~~l~sgs-~dg--~I~iwd~ 277 (474)
+.+. . +..+.|. .++ .|..||-
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcC
Confidence 8773 3 3444443 233 3555553
No 484
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=85.60 E-value=9.4 Score=29.51 Aligned_cols=41 Identities=7% Similarity=-0.002 Sum_probs=31.4
Q ss_pred CCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEE
Q 011971 356 ADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTH 396 (474)
Q Consensus 356 ~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~ 396 (474)
.+|.+.-||..+++....++.=.-...+++++++..++++-
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 57889999999988766666556788999999999988863
No 485
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.43 E-value=19 Score=34.50 Aligned_cols=116 Identities=14% Similarity=0.243 Sum_probs=69.7
Q ss_pred CcEEEEECcCCcceEeeecCcCCCEEEEEEecCCCEEEEEe------CCCcEEEEECCCCcceEEEcc-----CCCcEEE
Q 011971 270 KSILQRDIRAQEDFVSKLSGHKSEVCGLKWSYDNRELASGG------NDNRLFVWNQHSTQPVLKYCE-----HTAAVKA 338 (474)
Q Consensus 270 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd~~~lasg~------~Dg~v~iwd~~~~~~~~~~~~-----h~~~V~~ 338 (474)
..|++||....+ ....-.+-.+.|..|.|..+.+.++.|. ....+..||+.+..-. .+.. -.++|.+
T Consensus 16 ~~lC~yd~~~~q-W~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQ-WSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCE-eecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEE
Confidence 358899987654 3333344667899999986666666664 3556888998766432 2222 2477888
Q ss_pred EEECC-CCCcEEEEecC-CCCCeEEEEECCCCceeee--ecCCCCeEEEEEcC
Q 011971 339 IAWSP-HLHGLLASGGG-TADRCIRFWNTTTNTHLSC--MDTGSQVCNLVWSK 387 (474)
Q Consensus 339 l~~sp-~~~~ll~sg~G-t~d~~I~iwd~~~~~~~~~--~~~~~~v~~l~~s~ 387 (474)
+.+.. ++..+++.|.. ..+..|..||=.....+.. +.....|..+.+-+
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 88743 44456665532 1234577787665554444 22344566665433
No 486
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=84.63 E-value=39 Score=32.46 Aligned_cols=134 Identities=13% Similarity=0.173 Sum_probs=0.0
Q ss_pred cEEEEECCCCcceEEEc------cCCCcEEEEEECCCCC-----cEEEEecCCCCCeEEEEECCCCceeeeecC------
Q 011971 314 RLFVWNQHSTQPVLKYC------EHTAAVKAIAWSPHLH-----GLLASGGGTADRCIRFWNTTTNTHLSCMDT------ 376 (474)
Q Consensus 314 ~v~iwd~~~~~~~~~~~------~h~~~V~~l~~sp~~~-----~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~------ 376 (474)
+|.+||+.+.+.++++. ...+.+..+.+..... ..+++-. ..+.|.++|+.+++..+....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~--~~~glIV~dl~~~~s~Rv~~~~~~~~p 112 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDS--GGPGLIVYDLATGKSWRVLHNSFSPDP 112 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEET--TTCEEEEEETTTTEEEEEETCGCTTS-
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCC--CcCcEEEEEccCCcEEEEecCCcceec
Q ss_pred --------------CCCeEEEEEcC---CCCeEEEEEecCCCeEEEEECCC--------------CceeEEEcCCCccEE
Q 011971 377 --------------GSQVCNLVWSK---NVNELVSTHGYSQNQIIVWRYPT--------------MSKLATLTGHTFRVL 425 (474)
Q Consensus 377 --------------~~~v~~l~~s~---~~~~l~~~~g~~dg~I~iwd~~~--------------~~~~~~l~~h~~~V~ 425 (474)
...+..++.++ +++.|+. + .-..-.+|.+++ ...+..+-.......
T Consensus 113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf--~-~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~ 189 (287)
T PF03022_consen 113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYF--H-PLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSD 189 (287)
T ss_dssp SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEE--E-ETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SEC
T ss_pred cccceeccCceEecCCCccccccCCCCCCccEEEE--E-eCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCc
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 426 YLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 426 ~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
.++++++|.+.++--..+.|..|+...
T Consensus 190 g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 190 GMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp EEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred eEEECCCCcEEEecCCCCeEEEEeCCC
No 487
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=84.45 E-value=76 Score=35.66 Aligned_cols=154 Identities=15% Similarity=0.176 Sum_probs=88.6
Q ss_pred CEEEEEEecCCC--EEEEEeC-----------CCcEEEEECC-CCcceEEEccCCCcEEEEEECCCCCcEEEEecCCCCC
Q 011971 293 EVCGLKWSYDNR--ELASGGN-----------DNRLFVWNQH-STQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADR 358 (474)
Q Consensus 293 ~V~~l~~spd~~--~lasg~~-----------Dg~v~iwd~~-~~~~~~~~~~h~~~V~~l~~sp~~~~ll~sg~Gt~d~ 358 (474)
.|+.+.|+.... ++++|.. +|.++.|++- .++.+.-+....-+-.-.+.+|.+..+++. ...
T Consensus 879 ~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~~~Lag----vG~ 954 (1205)
T KOG1898|consen 879 SVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQGRVLAG----VGR 954 (1205)
T ss_pred heeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCCCccceEEeccCCEEEEe----ccc
Confidence 466667765333 3444432 3446666653 333222121111222335678888766664 468
Q ss_pred eEEEEECCCCceeeeecC---CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceeEEEcCC--CccEEEEEECCC
Q 011971 359 CIRFWNTTTNTHLSCMDT---GSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT-MSKLATLTGH--TFRVLYLAISPD 432 (474)
Q Consensus 359 ~I~iwd~~~~~~~~~~~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~~~~~~l~~h--~~~V~~l~~spd 432 (474)
.+++||+...+.++.... ...|..+++ .+..+++ |...-.+.++.++. ...+..+... ...|+.+.+- |
T Consensus 955 ~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~V--gD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D 1029 (1205)
T KOG1898|consen 955 FLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVV--GDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-D 1029 (1205)
T ss_pred EEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEE--eeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-c
Confidence 999999998877665443 344666655 3566777 76777777666653 3444444332 2345655554 4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCC
Q 011971 433 GQTIVTGAGDETLRFWNVFPSPK 455 (474)
Q Consensus 433 g~~l~t~s~Dg~I~iW~l~~~~~ 455 (474)
-..++.|..=|.+.+-.+.....
T Consensus 1030 ~~tvagaDrfGNi~~vR~P~d~~ 1052 (1205)
T KOG1898|consen 1030 YDTVAGADRFGNIAVVRIPPDVS 1052 (1205)
T ss_pred CCceeeccccCcEEEEECCCcch
Confidence 45788888888888887765443
No 488
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=83.91 E-value=8.7 Score=40.64 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=43.8
Q ss_pred CCCcEEEEEcCCeEEEEeCCC----CCEEEEEecC---------------------CCCCEEEEEEcC----CCCEEEEE
Q 011971 176 SSHNVLAVGLGNCVYLWNACS----SKVTKLCDLG---------------------IDDSVCSVGWAN----RNTHLAVG 226 (474)
Q Consensus 176 s~~~~la~~~d~~V~lwd~~~----~~~~~~~~~~---------------------~~~~V~~v~~sp----~g~~la~g 226 (474)
++..++.+..||.+....... +......... ....+.+++++. +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 556777777788776666543 2222211111 123566677776 67899999
Q ss_pred eCCCcEEEecCCCCeEEEEec
Q 011971 227 TSHGKVQIWDASRCKRVRTME 247 (474)
Q Consensus 227 s~dg~I~iwd~~~~~~~~~~~ 247 (474)
+.|+.+++||+.+++++.++.
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEec
Confidence 999999999999999977653
No 489
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=83.85 E-value=1.8 Score=46.83 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=24.7
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCcceEEEccCCCcEEEEEECC
Q 011971 301 YDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSP 343 (474)
Q Consensus 301 pd~~~lasg~~Dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~sp 343 (474)
++.-++..+-.++.|++........ ..+..|...+..++|-.
T Consensus 193 ~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~ 234 (1283)
T KOG1916|consen 193 VNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFA 234 (1283)
T ss_pred cccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHh
Confidence 3556677777788888776654332 23344666665555433
No 490
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=83.31 E-value=62 Score=33.81 Aligned_cols=285 Identities=16% Similarity=0.076 Sum_probs=140.2
Q ss_pred cccccCCCCCCCcceeeeeCCCCcEEEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 011971 156 YKILDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSHGKVQIW 235 (474)
Q Consensus 156 ~~~l~ap~~~~d~~v~~l~~s~~~~la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~dg~I~iw 235 (474)
-+++..+....|..++.+.-+-+.-+-+|.+..|++.+.++.+.......-..+.|..+.=..+| .+.+|+.+|..+.-
T Consensus 194 gkalql~s~~~dk~I~al~~d~qg~LWVGTdqGv~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~~ 272 (671)
T COG3292 194 GKALQLASPPLDKAINALIADVQGRLWVGTDQGVYLQEAEGWRASNWGPMLPSGNILLLVQDAQG-ELWIGTENGLWRTR 272 (671)
T ss_pred ceEEEcCCCcchhhHHHHHHHhcCcEEEEeccceEEEchhhccccccCCCCcchheeeeecccCC-CEEEeecccceeEe
Confidence 34444444444444555554445567788888999999887555444332234566666555555 57788888755433
Q ss_pred cCCCCeEEEE-ecCCC--CcEEEEEec-CCEEEEEeCCCcEEEEECcCCc-ceEeeecCcCCCEEEEEEecCCCEEEEEe
Q 011971 236 DASRCKRVRT-MEGHR--LRVGALAWS-SSLLSSGSRDKSILQRDIRAQE-DFVSKLSGHKSEVCGLKWSYDNRELASGG 310 (474)
Q Consensus 236 d~~~~~~~~~-~~~h~--~~V~~l~~~-~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~spd~~~lasg~ 310 (474)
......... .+.|. ..|.++.-+ ...|-+++.+|.+.+-+-.-.. ..+....+-...-+.++..-.+..+--..
T Consensus 273 -l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n 351 (671)
T COG3292 273 -LPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN 351 (671)
T ss_pred -cCCCCccccccccCCccccccceeeccCCCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc
Confidence 333322222 22222 334445444 3567777777766654432100 00111111111111111111111222222
Q ss_pred CCCcEEEEECCCCcceEEEc-cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCC-Cceeeeec--CCCCeEEEEEc
Q 011971 311 NDNRLFVWNQHSTQPVLKYC-EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTT-NTHLSCMD--TGSQVCNLVWS 386 (474)
Q Consensus 311 ~Dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~-~~~~~~~~--~~~~v~~l~~s 386 (474)
.-|.+.+-+-.++..+.... .....|+.+++...+.-.+.+ ..+-+..|+..+ +..+.+.. ..+.|+.+.=.
T Consensus 352 s~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs----~q~GLsrl~n~n~~avlde~agl~ss~V~aived 427 (671)
T COG3292 352 SIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGS----MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVED 427 (671)
T ss_pred ccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEe----cccchhhhccCCcccccccccCCcccceeeeeec
Confidence 22334444444454443322 233556777777755533333 444466677666 44443333 35678888888
Q ss_pred CCCCeEEEEEecCCCeEEEEECCCCceeEEEc--C---CCccEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 011971 387 KNVNELVSTHGYSQNQIIVWRYPTMSKLATLT--G---HTFRVLYLAISPDGQTIVTGAGDETLRFWNVFP 452 (474)
Q Consensus 387 ~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~--~---h~~~V~~l~~spdg~~l~t~s~Dg~I~iW~l~~ 452 (474)
|+++ |.. |..+|.++. +.+.++....+. . ..+.|..+.+-|+|++-+. +++| |..|+-..
T Consensus 428 ~dns-LWI--GTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a-~g~g-va~~~sq~ 492 (671)
T COG3292 428 PDNS-LWI--GTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLA-AGSG-VAAWESQR 492 (671)
T ss_pred CCCC-EEE--eccCCeEec-CccccchhcccccccCcCCcchhhhhccCCCCceEEE-ecce-eeeecccc
Confidence 8888 555 656665442 222322222221 1 2345778889999975443 3343 46666543
No 491
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=83.27 E-value=49 Score=32.52 Aligned_cols=83 Identities=13% Similarity=0.065 Sum_probs=40.1
Q ss_pred CeEEEEeCC--CCCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-----------CcEEEecCCCCeEEEEecCC-C--
Q 011971 187 NCVYLWNAC--SSKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-----------GKVQIWDASRCKRVRTMEGH-R-- 250 (474)
Q Consensus 187 ~~V~lwd~~--~~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d-----------g~I~iwd~~~~~~~~~~~~h-~-- 250 (474)
..++++|+. +.+...+..+............-++++.++|+.+ ..+..||..+.+-...-... .
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~ 108 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGL 108 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcc
Confidence 467778863 3444444333211111111122356777777653 24778888776543321111 1
Q ss_pred CcEEEE-EecCCEEEEEeCC
Q 011971 251 LRVGAL-AWSSSLLSSGSRD 269 (474)
Q Consensus 251 ~~V~~l-~~~~~~l~sgs~d 269 (474)
.....+ ...+.+.+.|+.+
T Consensus 109 ~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 109 LGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred cceeEEEEeCCEEEEEcCcC
Confidence 112223 3456777777764
No 492
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=82.84 E-value=8.8 Score=33.73 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=26.6
Q ss_pred ccEEEEEECCCC------CEEEEEeCCCcEEEEeCCCC
Q 011971 422 FRVLYLAISPDG------QTIVTGAGDETLRFWNVFPS 453 (474)
Q Consensus 422 ~~V~~l~~spdg------~~l~t~s~Dg~I~iW~l~~~ 453 (474)
..|.+++|||-| .+|++.+.+|.|.+|.-...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 479999999943 47889999999999987754
No 493
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=82.74 E-value=55 Score=32.73 Aligned_cols=84 Identities=12% Similarity=0.018 Sum_probs=40.2
Q ss_pred CCeEEEEeCCC--CCEEEEEecCCCCCEEEEEEcCCCCEEEEEeCC-----------CcEEEecCCCCeEEEEec-CCCC
Q 011971 186 GNCVYLWNACS--SKVTKLCDLGIDDSVCSVGWANRNTHLAVGTSH-----------GKVQIWDASRCKRVRTME-GHRL 251 (474)
Q Consensus 186 d~~V~lwd~~~--~~~~~~~~~~~~~~V~~v~~sp~g~~la~gs~d-----------g~I~iwd~~~~~~~~~~~-~h~~ 251 (474)
+..+.++|... ++...+..+............-++.+.+.|+.. ..+..||..+.+-...-. ....
T Consensus 49 ~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~ 128 (376)
T PRK14131 49 GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVG 128 (376)
T ss_pred CCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCc
Confidence 34678888763 344444333211111111222356666777643 247788887665433211 1111
Q ss_pred --cEEEEE-ecCCEEEEEeCC
Q 011971 252 --RVGALA-WSSSLLSSGSRD 269 (474)
Q Consensus 252 --~V~~l~-~~~~~l~sgs~d 269 (474)
....++ .++.+.+.|+.+
T Consensus 129 ~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 129 LAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred ccceEEEEeeCCEEEEECCCC
Confidence 112233 456777777754
No 494
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=82.25 E-value=7.4 Score=24.63 Aligned_cols=32 Identities=22% Similarity=0.151 Sum_probs=25.3
Q ss_pred CCCCeEEEEEecCCCeEEEEECCCCceeEEEcC
Q 011971 387 KNVNELVSTHGYSQNQIIVWRYPTMSKLATLTG 419 (474)
Q Consensus 387 ~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~ 419 (474)
|+++.|+++ ...++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~-~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVT-NSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEE-eCCCCEEEEEECCCCeEEEEEEC
Confidence 567777775 45688999999999888887765
No 495
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=82.09 E-value=61 Score=32.95 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=25.4
Q ss_pred CCEEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011971 292 SEVCGLKWSYDNRELASGGNDNRLFVWNQHS 322 (474)
Q Consensus 292 ~~V~~l~~spd~~~lasg~~Dg~v~iwd~~~ 322 (474)
..|..++..+..+.|++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999889999999999999999975
No 496
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.80 E-value=43 Score=38.18 Aligned_cols=73 Identities=10% Similarity=0.020 Sum_probs=41.4
Q ss_pred cCCCcEEEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011971 331 EHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (474)
Q Consensus 331 ~h~~~V~~l~~sp~~~~ll~sg~Gt~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 410 (474)
.+..++.+..+.......+.. ..+.+-+|+.........+....+ .++.++..+++ +..||.+.+||...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~--~h~Dgs~~fWd~s~ 265 (993)
T KOG1983|consen 196 LIEYESLQVLYYSPTKILIGF----NRGLVVIKDRASKYVQSAYLPNGQ----LESRDGSHFVS--YHTDGSYAFWDVSS 265 (993)
T ss_pred ccccccceeeeecCCCcceee----eeeeeeehhcccccchhhcccccc----cCccCCceEEE--EEecCCEEeeecCC
Confidence 345555565555444433332 345666666544333333222211 12777888888 77899999999887
Q ss_pred Cce
Q 011971 411 MSK 413 (474)
Q Consensus 411 ~~~ 413 (474)
++.
T Consensus 266 g~~ 268 (993)
T KOG1983|consen 266 GKL 268 (993)
T ss_pred Cce
Confidence 644
No 497
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=81.73 E-value=97 Score=34.88 Aligned_cols=113 Identities=11% Similarity=0.146 Sum_probs=71.7
Q ss_pred CCCCCcceeeeeCCCCcEEEEEcCCeEEEEeC-CCCCEEEEEec-CCCCCEEEEEEcCCC------CEEEEEeCCCcEEE
Q 011971 163 ALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNA-CSSKVTKLCDL-GIDDSVCSVGWANRN------THLAVGTSHGKVQI 234 (474)
Q Consensus 163 ~~~~d~~v~~l~~s~~~~la~~~d~~V~lwd~-~~~~~~~~~~~-~~~~~V~~v~~sp~g------~~la~gs~dg~I~i 234 (474)
....+.++.+.+.+...++.+-+++.+.-+.. .+++.....+- .-...|.|+++.+++ ++++.|+.|+.+++
T Consensus 535 ~~P~~~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vri 614 (1205)
T KOG1898|consen 535 KTPERVRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRI 614 (1205)
T ss_pred cCCCceEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeE
Confidence 34455667777766666666556666555544 45555554321 336789999998865 58999999999999
Q ss_pred ecCCCCeEEEEec--CCCCcEEEEEec-----C------CEEEEEeCCCcEEEE
Q 011971 235 WDASRCKRVRTME--GHRLRVGALAWS-----S------SLLSSGSRDKSILQR 275 (474)
Q Consensus 235 wd~~~~~~~~~~~--~h~~~V~~l~~~-----~------~~l~sgs~dg~I~iw 275 (474)
+.+....++..+. +-..++.++.+- + =+|.+|-++|.+.-.
T Consensus 615 isL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~ 668 (1205)
T KOG1898|consen 615 ISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRF 668 (1205)
T ss_pred EEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEecccccEEEEE
Confidence 9887666665553 344444444442 1 156677777766544
No 498
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=79.63 E-value=65 Score=32.75 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011971 378 SQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPT 410 (474)
Q Consensus 378 ~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 410 (474)
..|..++..+..+.+++ -..++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~--l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYT--LTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEE--EESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEE--EeCCCcEEEEEEeC
Confidence 34888888888888888 45899999999974
No 499
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.59 E-value=32 Score=39.35 Aligned_cols=141 Identities=13% Similarity=0.152 Sum_probs=83.6
Q ss_pred EEEEcCCeEEEEeCCCCCEEEEEecCCCCCEEEEEEc--------CCCCEEEEEeCCCcEEEecCCCCeE-------E--
Q 011971 181 LAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWA--------NRNTHLAVGTSHGKVQIWDASRCKR-------V-- 243 (474)
Q Consensus 181 la~~~d~~V~lwd~~~~~~~~~~~~~~~~~V~~v~~s--------p~g~~la~gs~dg~I~iwd~~~~~~-------~-- 243 (474)
+=...|+.+++|+.+++.-...++ +....|..|..- |.=++|++-+.--.|.|+-+.-.+. .
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d-~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~ 171 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYD-GLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTS 171 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCcccccc-chhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccc
Confidence 345668999999999866555543 345566666543 2223444444444566664432111 0
Q ss_pred EEecCCCCcEEEEEec-CCEEEEEeCCCcEEEE--ECcCCc-------c------------eEeeec-CcCCCEEEEEEe
Q 011971 244 RTMEGHRLRVGALAWS-SSLLSSGSRDKSILQR--DIRAQE-------D------------FVSKLS-GHKSEVCGLKWS 300 (474)
Q Consensus 244 ~~~~~h~~~V~~l~~~-~~~l~sgs~dg~I~iw--d~~~~~-------~------------~~~~~~-~h~~~V~~l~~s 300 (474)
..+......|.|+... ...++-++.||.|+-. ....+- . .+..+. .+..+|..|...
T Consensus 172 ~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 172 FKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred eeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 1122335677888853 4555666666655322 111110 0 011222 567899999998
Q ss_pred cCCCEEEEEeCCCcEEEEECCC
Q 011971 301 YDNRELASGGNDNRLFVWNQHS 322 (474)
Q Consensus 301 pd~~~lasg~~Dg~v~iwd~~~ 322 (474)
..-+.+.+-+..|+|.+||+..
T Consensus 252 ~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccceeeeeccCceEEEEEccC
Confidence 8888999999999999999875
No 500
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=79.55 E-value=10 Score=23.77 Aligned_cols=35 Identities=29% Similarity=0.277 Sum_probs=0.0
Q ss_pred eEEEcCCCccEEEEEECCCCCEEE-EEeCC--CcEEEE
Q 011971 414 LATLTGHTFRVLYLAISPDGQTIV-TGAGD--ETLRFW 448 (474)
Q Consensus 414 ~~~l~~h~~~V~~l~~spdg~~l~-t~s~D--g~I~iW 448 (474)
+..+......-...+|||||+.|+ ++..+ |.-.||
T Consensus 1 l~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 1 LKQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Done!